Query 021262
Match_columns 315
No_of_seqs 242 out of 1356
Neff 5.1
Searched_HMMs 29240
Date Mon Mar 25 15:07:11 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021262.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/021262hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3iz6_A 40S ribosomal protein S 100.0 3.6E-98 1E-102 706.7 14.6 276 1-287 1-283 (305)
2 2zkq_b 40S ribosomal protein S 100.0 6.4E-92 2.2E-96 665.0 16.9 271 9-286 5-281 (295)
3 3u5c_A 40S ribosomal protein S 100.0 2.1E-88 7.1E-93 629.1 19.6 217 8-224 3-220 (252)
4 2xzm_B RPS0E; ribosome, transl 100.0 5.3E-85 1.8E-89 603.8 19.4 222 11-233 2-224 (241)
5 3bch_A 40S ribosomal protein S 100.0 2.3E-84 8E-89 602.2 19.8 222 1-222 30-251 (253)
6 3j20_B 30S ribosomal protein S 100.0 5.3E-73 1.8E-77 512.0 20.1 192 17-209 7-198 (202)
7 1vi6_A 30S ribosomal protein S 100.0 2.2E-72 7.4E-77 509.9 17.1 191 17-213 11-201 (208)
8 2vqe_B 30S ribosomal protein S 100.0 1.4E-63 4.7E-68 464.6 9.1 180 17-199 5-233 (256)
9 3bbn_B Ribosomal protein S2; s 100.0 1.1E-61 3.9E-66 446.0 14.8 175 17-192 4-227 (231)
10 3r8n_B 30S ribosomal protein S 100.0 1.2E-62 4.2E-67 449.1 3.7 168 22-190 1-217 (218)
11 2yva_A DNAA initiator-associat 95.8 0.059 2E-06 45.8 10.0 135 53-188 14-188 (196)
12 1m3s_A Hypothetical protein YC 95.5 0.079 2.7E-06 44.6 9.7 120 62-192 27-173 (186)
13 1vim_A Hypothetical protein AF 94.8 0.14 4.6E-06 44.3 9.3 89 72-168 44-141 (200)
14 1nri_A Hypothetical protein HI 94.7 0.13 4.4E-06 47.9 9.4 148 54-205 49-236 (306)
15 3etn_A Putative phosphosugar i 94.6 0.36 1.2E-05 42.5 11.6 129 61-192 43-196 (220)
16 2i2w_A Phosphoheptose isomeras 94.6 0.22 7.5E-06 43.3 10.0 108 60-169 48-184 (212)
17 3trj_A Phosphoheptose isomeras 94.0 0.46 1.6E-05 41.3 10.9 111 61-172 31-173 (201)
18 3fxa_A SIS domain protein; str 93.7 0.16 5.3E-06 43.5 7.2 73 120-192 90-180 (201)
19 1x92_A APC5045, phosphoheptose 93.7 0.64 2.2E-05 39.4 11.0 117 54-171 19-171 (199)
20 1jeo_A MJ1247, hypothetical pr 93.6 0.37 1.2E-05 40.3 9.2 113 72-192 37-167 (180)
21 3sho_A Transcriptional regulat 93.2 0.19 6.6E-06 42.1 6.8 69 120-188 85-165 (187)
22 2xbl_A Phosphoheptose isomeras 93.1 2 7E-05 36.0 13.2 110 60-170 32-170 (198)
23 2xhz_A KDSD, YRBH, arabinose 5 92.7 0.32 1.1E-05 40.7 7.5 91 76-167 50-147 (183)
24 2a3n_A Putative glucosamine-fr 92.5 0.23 7.8E-06 46.9 6.9 137 52-191 29-178 (355)
25 1tk9_A Phosphoheptose isomeras 91.7 1.6 5.3E-05 36.4 10.6 110 60-170 26-164 (188)
26 2aml_A SIS domain protein; 469 91.6 0.57 2E-05 44.5 8.6 75 120-194 95-185 (373)
27 3knz_A Putative sugar binding 90.8 1.2 4E-05 42.5 9.9 121 72-195 47-185 (366)
28 3cvj_A Putative phosphoheptose 89.7 0.86 2.9E-05 40.2 7.5 94 60-154 26-144 (243)
29 3g68_A Putative phosphosugar i 88.0 2.2 7.4E-05 40.3 9.4 119 73-194 32-169 (352)
30 3jx9_A Putative phosphoheptose 85.6 2.5 8.6E-05 36.5 7.7 96 60-164 22-127 (170)
31 3eua_A Putative fructose-amino 80.2 4.9 0.00017 37.3 7.9 72 120-191 72-153 (329)
32 3fj1_A Putative phosphosugar i 78.0 18 0.00063 33.7 11.2 94 73-168 41-143 (344)
33 3fkj_A Putative phosphosugar i 77.4 8.5 0.00029 36.2 8.7 107 60-168 25-141 (347)
34 3tbf_A Glucosamine--fructose-6 75.2 3.4 0.00012 39.3 5.3 120 72-194 51-189 (372)
35 1moq_A Glucosamine 6-phosphate 73.8 3.9 0.00013 38.4 5.4 72 120-191 97-184 (368)
36 2zj3_A Glucosamine--fructose-6 72.9 1.8 6.2E-05 41.1 2.8 48 121-168 106-159 (375)
37 3hba_A Putative phosphosugar i 72.6 39 0.0013 31.4 11.9 94 73-168 40-142 (334)
38 2poc_A D-fructose-6- PH, isome 71.5 3.7 0.00013 38.7 4.6 48 121-168 96-149 (367)
39 2xci_A KDO-transferase, 3-deox 69.1 13 0.00043 34.6 7.7 90 60-150 210-307 (374)
40 3iz6_A 40S ribosomal protein S 68.3 0.37 1.3E-05 45.7 -3.1 10 278-287 284-293 (305)
41 3dfz_A SIRC, precorrin-2 dehyd 64.9 7.3 0.00025 34.8 4.9 107 49-173 33-152 (223)
42 2bpl_A Glucosamine--fructose-6 56.4 14 0.00048 37.2 5.8 117 72-191 289-424 (608)
43 3kjx_A Transcriptional regulat 53.9 81 0.0028 28.0 10.0 101 56-157 39-159 (344)
44 3gv0_A Transcriptional regulat 53.9 27 0.00094 30.2 6.6 44 121-165 65-108 (288)
45 2vsy_A XCC0866; transferase, g 52.9 34 0.0012 32.8 7.6 91 60-151 391-482 (568)
46 3h5t_A Transcriptional regulat 52.7 81 0.0028 28.3 9.8 58 121-182 127-184 (366)
47 3c3j_A Putative tagatose-6-pho 50.7 44 0.0015 31.4 7.9 71 121-191 102-190 (384)
48 2bfw_A GLGA glycogen synthase; 49.0 32 0.0011 27.8 5.8 88 60-151 53-145 (200)
49 1j5x_A Glucosamine-6-phosphate 48.8 12 0.00041 34.8 3.6 93 72-167 49-151 (342)
50 3lvj_C Sulfurtransferase TUSA; 47.0 29 0.00098 25.8 4.8 49 64-112 26-74 (82)
51 3cs3_A Sugar-binding transcrip 46.2 52 0.0018 28.1 7.1 42 122-164 57-98 (277)
52 1pjq_A CYSG, siroheme synthase 45.7 67 0.0023 31.1 8.5 98 65-173 24-134 (457)
53 3hgt_A HDA1 complex subunit 3; 45.4 42 0.0014 31.8 6.8 131 55-193 104-272 (328)
54 3uow_A GMP synthetase; structu 45.3 47 0.0016 33.3 7.5 76 74-153 6-91 (556)
55 3r75_A Anthranilate/para-amino 44.1 45 0.0015 34.3 7.3 71 75-152 446-528 (645)
56 3hz7_A Uncharacterized protein 43.9 25 0.00084 26.7 4.1 51 63-113 16-67 (87)
57 3k4h_A Putative transcriptiona 43.7 39 0.0013 29.0 5.9 44 121-165 68-112 (292)
58 1pav_A Hypothetical protein TA 43.5 24 0.00083 25.7 3.9 47 67-113 25-71 (78)
59 3s2u_A UDP-N-acetylglucosamine 42.9 19 0.00065 33.3 3.9 35 121-156 91-125 (365)
60 3qk7_A Transcriptional regulat 42.5 49 0.0017 28.7 6.4 58 121-182 64-121 (294)
61 3l7n_A Putative uncharacterize 41.3 43 0.0015 29.2 5.8 71 78-152 3-91 (236)
62 4gyw_A UDP-N-acetylglucosamine 41.0 56 0.0019 33.6 7.5 106 40-152 523-629 (723)
63 1gpw_B Amidotransferase HISH; 40.9 55 0.0019 27.4 6.3 33 121-153 41-85 (201)
64 1ka9_H Imidazole glycerol phos 40.7 69 0.0024 26.9 6.9 33 121-153 39-83 (200)
65 2fep_A Catabolite control prot 40.0 49 0.0017 28.7 6.0 43 121-164 71-113 (289)
66 3i0z_A Putative tagatose-6-pho 39.8 2.5E+02 0.0085 26.6 11.8 114 74-193 229-365 (389)
67 3d8u_A PURR transcriptional re 39.7 43 0.0015 28.4 5.5 43 121-164 58-100 (275)
68 3m9w_A D-xylose-binding peripl 39.4 63 0.0022 28.1 6.6 41 121-162 57-99 (313)
69 3egc_A Putative ribose operon 39.4 46 0.0016 28.6 5.7 44 121-165 63-106 (291)
70 3odp_A Putative tagatose-6-pho 39.4 1.7E+02 0.0058 27.8 10.1 118 74-198 229-374 (393)
71 3hcw_A Maltose operon transcri 39.2 40 0.0014 29.3 5.3 36 121-157 67-102 (295)
72 3m3p_A Glutamine amido transfe 39.0 62 0.0021 28.9 6.6 74 75-152 3-89 (250)
73 1tjy_A Sugar transport protein 38.9 41 0.0014 29.8 5.4 35 121-156 59-95 (316)
74 1tzb_A Glucose-6-phosphate iso 38.9 63 0.0022 29.2 6.7 44 121-165 78-125 (302)
75 3cf4_G Acetyl-COA decarboxylas 38.7 54 0.0018 27.3 5.8 56 78-133 38-118 (170)
76 2e5f_A Hypothetical protein PH 38.7 16 0.00056 33.6 2.8 62 122-186 79-153 (325)
77 2rgy_A Transcriptional regulat 38.6 54 0.0019 28.3 6.0 43 121-164 66-108 (290)
78 3knz_A Putative sugar binding 38.2 1.6E+02 0.0056 27.5 9.7 114 73-193 221-347 (366)
79 2jjm_A Glycosyl transferase, g 37.5 1E+02 0.0036 27.5 8.0 100 56-161 223-323 (394)
80 3bbl_A Regulatory protein of L 37.2 66 0.0023 27.7 6.4 35 121-156 63-97 (287)
81 3brq_A HTH-type transcriptiona 37.2 70 0.0024 27.2 6.5 43 121-164 76-119 (296)
82 3rot_A ABC sugar transporter, 37.2 55 0.0019 28.3 5.9 36 121-157 60-97 (297)
83 4fmw_A RNA (guanine-9-)-methyl 35.8 68 0.0023 28.0 6.2 74 55-134 38-111 (197)
84 1f0k_A MURG, UDP-N-acetylgluco 35.8 66 0.0023 28.4 6.2 84 56-151 196-280 (364)
85 2zxr_A Single-stranded DNA spe 34.9 1.6E+02 0.0055 30.4 9.7 94 62-156 58-162 (666)
86 2f9f_A First mannosyl transfer 34.7 27 0.00091 28.2 3.2 75 74-151 49-127 (177)
87 1jdq_A TM006 protein, hypothet 34.1 52 0.0018 25.5 4.6 47 66-112 44-91 (98)
88 3l6u_A ABC-type sugar transpor 34.0 95 0.0033 26.4 6.8 59 121-183 63-124 (293)
89 3k9c_A Transcriptional regulat 33.9 68 0.0023 27.7 5.9 44 121-166 65-108 (289)
90 3qhp_A Type 1 capsular polysac 33.7 85 0.0029 24.3 6.0 88 59-153 17-107 (166)
91 3e3m_A Transcriptional regulat 33.3 82 0.0028 28.2 6.5 36 121-156 125-160 (355)
92 4gud_A Imidazole glycerol phos 32.4 56 0.0019 27.5 5.0 68 77-153 4-80 (211)
93 3fro_A GLGA glycogen synthase; 31.8 65 0.0022 28.9 5.6 89 59-151 267-360 (439)
94 2gek_A Phosphatidylinositol ma 30.2 55 0.0019 29.2 4.8 88 58-151 223-313 (406)
95 3md9_A Hemin-binding periplasm 29.9 35 0.0012 29.4 3.3 32 120-151 57-88 (255)
96 3o74_A Fructose transport syst 29.8 62 0.0021 27.3 4.8 44 121-165 57-101 (272)
97 3jy6_A Transcriptional regulat 29.3 62 0.0021 27.6 4.8 43 121-165 62-104 (276)
98 2iuy_A Avigt4, glycosyltransfe 28.6 1E+02 0.0036 27.0 6.3 85 57-151 175-271 (342)
99 3tbf_A Glucosamine--fructose-6 28.6 3.6E+02 0.012 25.1 12.9 116 73-193 225-358 (372)
100 3egc_A Putative ribose operon 28.4 75 0.0026 27.2 5.2 92 63-155 114-225 (291)
101 3ksm_A ABC-type sugar transpor 28.2 1.1E+02 0.0038 25.6 6.1 34 123-157 60-95 (276)
102 3clk_A Transcription regulator 28.1 60 0.0021 27.9 4.5 35 121-156 64-98 (290)
103 3c3k_A Alanine racemase; struc 28.0 71 0.0024 27.4 5.0 42 121-164 63-104 (285)
104 2pln_A HP1043, response regula 27.9 60 0.0021 24.3 4.0 74 74-155 17-96 (137)
105 3huu_A Transcription regulator 27.8 91 0.0031 27.0 5.7 44 121-165 82-125 (305)
106 3gbv_A Putative LACI-family tr 27.7 92 0.0032 26.5 5.6 45 121-166 68-115 (304)
107 3qk7_A Transcriptional regulat 27.2 68 0.0023 27.8 4.7 59 121-179 186-255 (294)
108 2r7a_A Bacterial heme binding 27.2 41 0.0014 29.0 3.3 32 120-151 57-88 (256)
109 2h3h_A Sugar ABC transporter, 27.0 1.3E+02 0.0045 26.1 6.6 44 121-165 56-102 (313)
110 3brs_A Periplasmic binding pro 26.8 92 0.0031 26.5 5.4 35 121-156 64-100 (289)
111 1o1y_A Conserved hypothetical 26.3 1E+02 0.0035 26.9 5.7 75 75-152 12-100 (239)
112 3g1w_A Sugar ABC transporter; 26.2 1.1E+02 0.0036 26.4 5.8 44 121-165 60-106 (305)
113 3o1i_D Periplasmic protein TOR 25.9 61 0.0021 27.8 4.1 30 121-151 62-93 (304)
114 4dad_A Putative pilus assembly 25.7 1E+02 0.0036 23.1 5.1 81 74-155 19-105 (146)
115 3oy2_A Glycosyltransferase B73 25.6 1.2E+02 0.004 27.4 6.1 96 56-151 196-303 (413)
116 2qzs_A Glycogen synthase; glyc 25.4 76 0.0026 29.5 5.0 89 57-151 305-396 (485)
117 1a9x_B Carbamoyl phosphate syn 25.4 72 0.0025 30.6 4.8 70 77-152 192-268 (379)
118 3g68_A Putative phosphosugar i 25.3 4E+02 0.014 24.5 12.8 114 73-193 206-332 (352)
119 1n2z_A Vitamin B12 transport p 25.3 44 0.0015 28.7 3.0 31 121-151 56-86 (245)
120 2o20_A Catabolite control prot 25.3 1.1E+02 0.0037 27.0 5.8 43 121-164 118-160 (332)
121 2r79_A Periplasmic binding pro 25.2 57 0.002 28.7 3.9 32 120-151 57-88 (283)
122 1t5i_A C_terminal domain of A 25.1 1.4E+02 0.0048 24.2 6.1 67 61-131 18-90 (172)
123 4hwg_A UDP-N-acetylglucosamine 24.9 42 0.0014 31.6 3.0 33 121-154 93-125 (385)
124 2x6q_A Trehalose-synthase TRET 24.6 1.6E+02 0.0053 26.6 6.8 90 59-151 246-345 (416)
125 2aml_A SIS domain protein; 469 24.2 4.3E+02 0.015 24.4 13.0 115 72-193 221-350 (373)
126 3miz_A Putative transcriptiona 24.1 89 0.003 27.0 4.9 58 121-178 196-264 (301)
127 1rzu_A Glycogen synthase 1; gl 23.9 72 0.0025 29.6 4.5 89 57-151 304-395 (485)
128 2fn9_A Ribose ABC transporter, 23.8 1.7E+02 0.0057 24.9 6.5 32 121-152 57-90 (290)
129 1dbq_A Purine repressor; trans 23.0 1.7E+02 0.0057 24.8 6.4 119 63-182 115-257 (289)
130 3gnn_A Nicotinate-nucleotide p 22.8 1.5E+02 0.0052 27.7 6.4 33 74-107 143-177 (298)
131 1jx6_A LUXP protein; protein-l 22.7 1.3E+02 0.0044 26.5 5.7 35 121-156 103-139 (342)
132 3fht_A ATP-dependent RNA helic 22.6 85 0.0029 28.2 4.6 105 60-184 252-362 (412)
133 4gim_A Pseudouridine-5'-phosph 22.2 2.1E+02 0.0073 27.3 7.3 26 121-146 249-287 (335)
134 1l7b_A DNA ligase; BRCT, autos 22.2 93 0.0032 23.8 4.0 61 75-150 10-70 (92)
135 1je3_A EC005, hypothetical 8.6 22.2 37 0.0013 26.4 1.7 56 41-104 28-83 (97)
136 3h5o_A Transcriptional regulat 22.0 1.8E+02 0.0063 25.6 6.7 33 121-153 117-149 (339)
137 3lq1_A 2-succinyl-5-enolpyruvy 21.9 1.1E+02 0.0036 30.4 5.4 69 62-133 214-300 (578)
138 3hhe_A Ribose-5-phosphate isom 21.7 2.1E+02 0.0073 26.1 7.0 80 61-169 28-107 (255)
139 2a9v_A GMP synthase; structura 21.6 1.3E+02 0.0044 25.7 5.3 70 77-152 15-92 (212)
140 2rb4_A ATP-dependent RNA helic 21.4 82 0.0028 25.5 3.8 68 61-132 21-94 (175)
141 3lft_A Uncharacterized protein 21.4 81 0.0028 27.4 4.1 108 63-175 120-244 (295)
142 4hv4_A UDP-N-acetylmuramate--L 21.3 1.3E+02 0.0046 29.1 6.0 58 120-178 79-139 (494)
143 3fij_A LIN1909 protein; 11172J 21.0 54 0.0018 29.0 2.8 19 134-152 97-115 (254)
144 2hsg_A Glucose-resistance amyl 20.9 92 0.0031 27.5 4.4 107 56-164 31-157 (332)
145 3kke_A LACI family transcripti 20.8 1.7E+02 0.006 25.2 6.1 42 121-165 70-112 (303)
146 3psh_A Protein HI_1472; substr 20.7 69 0.0024 28.6 3.5 33 121-154 83-115 (326)
147 3tqv_A Nicotinate-nucleotide p 20.5 3.7E+02 0.012 24.9 8.4 33 74-107 132-166 (287)
148 2cc0_A Acetyl-xylan esterase; 20.2 3.3E+02 0.011 22.5 7.6 77 15-103 45-122 (195)
149 3k4h_A Putative transcriptiona 20.2 94 0.0032 26.5 4.1 116 62-178 119-258 (292)
150 3bbl_A Regulatory protein of L 20.0 1.2E+02 0.0041 26.0 4.8 93 62-155 113-227 (287)
No 1
>3iz6_A 40S ribosomal protein SA (S2P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=100.00 E-value=3.6e-98 Score=706.68 Aligned_cols=276 Identities=78% Similarity=1.261 Sum_probs=240.3
Q ss_pred CCCCCCCCCccCCCcHHHHHHHHHcCceeccccCCCCCcccceeeecCCccccCHHHHHHHHHHHHHHHHHhhCCCcEEE
Q 021262 1 MATGTATAPRQLSQKEADIQMMLAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEKLQMAARVIVAIENPGDIIV 80 (315)
Q Consensus 1 ~~~~~~~~~~~l~~k~~~i~kLLaAgvHlG~~~~n~~M~~YIyg~R~dGi~IINL~kT~ekL~~Aa~~I~~I~n~~~Ilf 80 (315)
||+.+.+.+++|+||++++++||++|+||||++|||+|++||||+|+||||||||+|||++|++|+++|++++|+++|||
T Consensus 1 ~~~~~~~~~~~l~~ke~dv~kLLaAGvH~Gt~~wNpkM~pYIyg~RndGIhIIdL~kT~e~L~~Aa~~I~~i~~~~~ILf 80 (305)
T 3iz6_A 1 MAAEGGAAARALSQREQDIQMMLAADVHLGTKNCDFQMERYVYKRRTDGIYIINLGKTWEKLQLAARVIVAIENPQDIIV 80 (305)
T ss_dssp CCSCCCSSCCCCSSCCSCCCCHHHHHHSSCBSCCCTTTTTSCCEEETTTEEECCHHHHHHHHHHHHHHHHHTTSSCCEEE
T ss_pred CCcccccccccccccHHHHHHHHHcCeeccCCcCCcCccccEEeeecCCceEECHHHHHHHHHHHHHHHHHHhCCCeEEE
Confidence 88887788999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EccCchhHHHHHHHHHHhCCccccCCccCCccCccccccccCCceEEEeCCCCCchhHHHhhhcCCCceeeccCCCCCCc
Q 021262 81 QSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRY 160 (315)
Q Consensus 81 Vstr~~~q~aV~kfA~~tga~~i~grw~pGtLTN~~~~~f~eP~lLIV~DP~~d~qaI~EAs~lnIPtIAL~DTds~~~~ 160 (315)
||||+++|++|+|||++||++||++||+|||||||++.+|++||+|||+||+.|||+|+||+++||||||||||||||++
T Consensus 81 VgTk~~aq~aV~k~A~~tG~~yV~~RWlgGtLTN~~t~~f~ePdllvV~Dp~~d~qAI~EA~~lnIPtIALvDTnsdp~~ 160 (305)
T 3iz6_A 81 QSARPYGQRAVLKFAQYTGAHAIAGRHTPGTFTNQLQTSFSEPRLLILTDPRTDHQPIKESALGNIPTIAFCDTDSPMRY 160 (305)
T ss_dssp ECCSHHHHHHHHHHHHHHTCEEECSCCCTTTTTTTTTSCSSCCSEEEESCTTTTHHHHHHHHHHTCCEEEEECTTSCGGG
T ss_pred EeCcHHHHHHHHHHHHHhCCccccCcccCCcccCcccccccCCceeEEeCcccchHHHHHHHHcCCCEEEEEcCCCCccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceEEecCCCCCcchHHHHHHHHHHHHHHhhcCCCCCCCcccccccccccCcccccchhhhhH--hhhhhh-hhccccCCC
Q 021262 161 VDIGIPANNKGKHSIGCLFWLLARMVLQMRGTIRPGHKWDVMVDLFFYREPEETKQAEEEET--AAIDYA-TAEYNTNLT 237 (315)
Q Consensus 161 VD~pIP~Nnds~~SI~li~~lLaraVl~~rg~i~~~~~w~v~~dl~fyrdpee~e~~e~~~~--~~~~~~-~~~~~~~~~ 237 (315)
|||+|||||||.+||+||||+|+++||++||++||+|||||||||||||||||+|||||+++ +.++|. ..||+. +
T Consensus 161 VDy~IP~NDds~rSI~Li~~lLA~aVl~~rgtis~~~~w~v~pdl~fyrdpee~ek~~~~~~~~~~~~~~~~~~~~~--~ 238 (305)
T 3iz6_A 161 VDIGIPANNKGKQSIGCLFWLLARMVLQMRGTILPGHKWDVMVDLFFYRDPEEAKEQEEEEAALVAPDYGAVAEYAA--P 238 (305)
T ss_dssp CSEEEESCCSSTHHHHHHHHHHHHHHHHTTSSCCSCCCCCCCCSSSCCCCCCCSCSHHHHHHHHHHHHHHHSCCSSC--C
T ss_pred cceEEeCCCCCccHHHHHHHHHHHHHHHhcCCCCCCCCcccCceeeeeeChhhhhhhhhhhccccccchhhhhhhcc--c
Confidence 99999999999999999999999999999999999999999999999999999999999887 556884 448863 5
Q ss_pred CCCCCCCcccCCCCCCCCCC--CCCCCC--CCCCCCCCCCCCCCCCCCCCCCCC
Q 021262 238 SGDQWPSQIADGGWAGGEVQ--KPIPGV--PYFPEAPAATVPLGGDGWDAVPAP 287 (315)
Q Consensus 238 ~~~~~~~~~~~~~w~~~~~~--~~~~~~--~~w~~~~~~~~~~~~~~w~~a~~~ 287 (315)
+.++|++ +|++++++ ++++.+ .+|+++|+ ++ ++|||+|++|
T Consensus 239 ~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~---~~-~~~~~~~~~~ 283 (305)
T 3iz6_A 239 AADTWGG-----EWGTDAAAQPAAIPAQAGADWTAAPA---PA-AGGWDTAAAP 283 (305)
T ss_dssp CSSHHHH-----HHHHHHHHHHHCSCC---------------------------
T ss_pred ccccccc-----ccccccccccCCCCCCCCCCcccccC---cc-CCCcccCCCC
Confidence 7788864 79998775 244444 69987766 33 7899998544
No 2
>2zkq_b 40S ribosomal protein SA; protein-RNA complex, 40S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}
Probab=100.00 E-value=6.4e-92 Score=664.98 Aligned_cols=271 Identities=53% Similarity=0.896 Sum_probs=190.3
Q ss_pred CccCCCcHHHHHHHHHcCceeccccCCCCCcccceeeecCCccccCHHHHHHHHHHHHHHHHHhhCCCcEEEEccCchhH
Q 021262 9 PRQLSQKEADIQMMLAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEKLQMAARVIVAIENPGDIIVQSARPYGQ 88 (315)
Q Consensus 9 ~~~l~~k~~~i~kLLaAgvHlG~~~~n~~M~~YIyg~R~dGi~IINL~kT~ekL~~Aa~~I~~I~n~~~IlfVstr~~~q 88 (315)
.++|+|+++++++||++|+||||++|||+|++||||+|+||||||||+||+++|++|+++|+.++++++|||||||+++|
T Consensus 5 ~~~l~~~~~~~~~LL~AgvH~Gh~~wnpkM~~YIyg~R~nGIhIIdL~kT~~~L~~A~~~i~~i~~~~~ILfVgTk~~aq 84 (295)
T 2zkq_b 5 LDVLQMKEEDVLKFLAAGTHLGGTNLDFQMEQYIYKRKSDGIYIINLKRTWEKLLLAARAIVAIENPADVSVISSRNTGQ 84 (295)
T ss_dssp --------CCHHHHHHHTTTBCCSCCCTGGGGGEEEECTTSCEEECHHHHHHHHHHHHHHHHHSSCGGGEEEEECSHHHH
T ss_pred cccccccHHHHHHHHhcCEEecCCcCCccccceEEeecCCCCEEEeHHHHHHHHHHHHHHHHHHhCCCeEEEEeCcHHHH
Confidence 67999999999999999999999999999999999999779999999999999999999999779999999999999999
Q ss_pred HHHHHHHHHhCCccccCCccCCccCccccccccCCceEEEeCCCCCchhHHHhhhcCCCceeeccCCCCCCcceEEecCC
Q 021262 89 RAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPAN 168 (315)
Q Consensus 89 ~aV~kfA~~tga~~i~grw~pGtLTN~~~~~f~eP~lLIV~DP~~d~qaI~EAs~lnIPtIAL~DTds~~~~VD~pIP~N 168 (315)
++|++||++||++||++||+||+||||++.+|++||+|||+||+.||+||+||+++||||||||||||||++|||+||||
T Consensus 85 ~~V~k~A~~~g~~yv~~RWlgG~LTN~~t~~f~~PdlliV~Dp~~e~~AI~EA~~lgIPvIalvDTn~dp~~VDy~IP~N 164 (295)
T 2zkq_b 85 RAVLKFAAATGATPIAGRFTPGTFTNQIQAAFREPRLLVVTDPRADHQPLTEASYVNLPTIALCNTDSPLRYVDIAIPCN 164 (295)
T ss_dssp HHHHHHHHHHCCEEEESSCCCC-CCCTTCSSCCCCSEEEESCTTTTHHHHHHHHHHTCCEEEEECTTCCCTTCSEEEESC
T ss_pred HHHHHHHHHhCCceecceEecccccCcccccccCCCeEEEeCCCcchhHHHHHHHhCCCEEEEecCCCCcccCCEEEeCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcchHHHHHHHHHHHHHHhhcCCCCCCCcccccccccccCcccccchhhhhHhhhhhhhhccc--cCCCCCCCCCCcc
Q 021262 169 NKGKHSIGCLFWLLARMVLQMRGTIRPGHKWDVMVDLFFYREPEETKQAEEEETAAIDYATAEYN--TNLTSGDQWPSQI 246 (315)
Q Consensus 169 nds~~SI~li~~lLaraVl~~rg~i~~~~~w~v~~dl~fyrdpee~e~~e~~~~~~~~~~~~~~~--~~~~~~~~~~~~~ 246 (315)
|||.+||+||+|+|+++|+++||+++|++||+|||||||||||||+|++||++++ ++.++++|+ +++++++...+++
T Consensus 165 dds~~SI~Li~~lla~aIl~~rg~i~~~~~w~v~~dlf~yrdpee~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 243 (295)
T 2zkq_b 165 NKGAHSVGLMWWMLAREVLRMRGTISREHPWEVMPDLYFYRDPEEIEKEEQAAAE-KAVTKEEFQGEWTAPAPEFTAAQP 243 (295)
T ss_dssp SSCHHHHHHHHHHHHHHHHHCCSSSSCCCCCCCCHHHHCCC---------------------------------------
T ss_pred CCccchHHHHHHHHHHHHHHhcCcccCCCCCcccchheeecCHHHhhhhhhhhhh-hhcchhhhcccccCCCcccccccc
Confidence 9999999999999999999999999999999999999999999999999877653 334455553 5566666555667
Q ss_pred cCCCCCCCCCCC--CCCCC--CCCCCCCCCCCCCCCCCCCCCCC
Q 021262 247 ADGGWAGGEVQK--PIPGV--PYFPEAPAATVPLGGDGWDAVPA 286 (315)
Q Consensus 247 ~~~~w~~~~~~~--~~~~~--~~w~~~~~~~~~~~~~~w~~a~~ 286 (315)
++++|+++++++ +++++ +||+++++ ++||++++.
T Consensus 244 ~~~~w~~~~~~~~~~~~~~~~~~w~~~~~------~~~w~~~~~ 281 (295)
T 2zkq_b 244 EVADWSEGVQVPSVPIQQFPTEDWSAQPS------TEDWSAAPT 281 (295)
T ss_dssp --------------------------------------------
T ss_pred ccccccccccccccccccCCccCcccccc------ccccccCCC
Confidence 788999988763 24444 59988877 899997743
No 3
>3u5c_A 40S ribosomal protein S0-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_A 3o30_A 3o2z_A 3u5g_A 3jyv_B* 1s1h_B
Probab=100.00 E-value=2.1e-88 Score=629.06 Aligned_cols=217 Identities=54% Similarity=0.917 Sum_probs=201.4
Q ss_pred CCccCCCcHHHHHHHHHcCceeccccCCCCCcccceeeecCCccccCHHHHHHHHHHHHHHHHHhhCCCcEEEEccCchh
Q 021262 8 APRQLSQKEADIQMMLAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEKLQMAARVIVAIENPGDIIVQSARPYG 87 (315)
Q Consensus 8 ~~~~l~~k~~~i~kLLaAgvHlG~~~~n~~M~~YIyg~R~dGi~IINL~kT~ekL~~Aa~~I~~I~n~~~IlfVstr~~~ 87 (315)
.+++|+||++++++||++|+||||++|||+|++||||+|+||||||||+|||++|++|+++|+.++++++|||||||+++
T Consensus 3 ~~~~l~~~e~~v~~lL~AGvH~G~~~wnpkM~~YIy~~R~nGIhIIdL~kT~~~L~~A~~~i~~i~~~~~vlfVgTk~~~ 82 (252)
T 3u5c_A 3 LPATFDLTPEDAQLLLAANTHLGARNVQVHQEPYVFNARPDGVHVINVGKTWEKLVLAARIIAAIPNPEDVVAISSRTFG 82 (252)
T ss_dssp CCSSCSCCHHHHHHHHHHTTTEECSSCCCTTCCCEEEEETTTEEEECHHHHHHHHHHHHHHHTTSSSGGGEEEEECSHHH
T ss_pred cchhcccCHHHHHHHHHCCeeccCCcCCcCchhheecccCCCcEEecHHHHHHHHHHHHHHHHHHhcCCEEEEEeCCcHH
Confidence 47899999999999999999999999999999999999978999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhCCccccCCccCCccCccccccccCCceEEEeCCCCCchhHHHhhhcCCCceeeccCCCCCCcceEEecC
Q 021262 88 QRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPA 167 (315)
Q Consensus 88 q~aV~kfA~~tga~~i~grw~pGtLTN~~~~~f~eP~lLIV~DP~~d~qaI~EAs~lnIPtIAL~DTds~~~~VD~pIP~ 167 (315)
|++|+|||+++|++||++||+||+||||++.+|++||+|||+||+.|||||+||+++||||||||||||||++|||+|||
T Consensus 83 q~~V~k~A~~~g~~~v~~rwlgGtLTN~~t~~f~~PdllvV~Dp~~d~~ai~EA~~l~IP~Ial~DTn~~p~~VD~~IP~ 162 (252)
T 3u5c_A 83 QRAVLKFAAHTGATPIAGRFTPGSFTNYITRSFKEPRLVIVTDPRSDAQAIKEASYVNIPVIALTDLDSPSEFVDVAIPC 162 (252)
T ss_dssp HHHHHHHHHHSSCEEEESCCCTTSSSCTTSTTCCCCSEEEESCTTTTHHHHHHHHTTTCCEEEEECTTCCCTTCSSEEEC
T ss_pred HHHHHHHHHHhCCceecCcccCCcccChhhhhccCCceEEEeCCccchHHHHHHHHcCCCEEEEEcCCCCcccCCEEEeC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCcchHHHHHHHHHHHHHHhhcCC-CCCCCcccccccccccCcccccchhhhhHhh
Q 021262 168 NNKGKHSIGCLFWLLARMVLQMRGTI-RPGHKWDVMVDLFFYREPEETKQAEEEETAA 224 (315)
Q Consensus 168 Nnds~~SI~li~~lLaraVl~~rg~i-~~~~~w~v~~dl~fyrdpee~e~~e~~~~~~ 224 (315)
||||.+||+||||+|+++|+++||++ ||+|||+|||||||||||||+||+++++++.
T Consensus 163 Ndds~~SI~Li~~~La~aVl~~rg~i~s~~~~w~v~~dl~fyrdpee~e~~~~~~~~~ 220 (252)
T 3u5c_A 163 NNRGKHSIGLIWYLLAREVLRLRGALVDRTQPWSIMPDLYFYRDPEEVEQQVAEEATT 220 (252)
T ss_dssp CTTSTTHHHHHHHHHHHHHHSSSSSCCSSSCCCSSCGGGSSCCCC-------------
T ss_pred CCCCcchHHHHHHHHHHHHHHhcCCcCcCCCCCccCceeeeecCHHHHhhHHHhhhhc
Confidence 99999999999999999999999999 6999999999999999999999988877633
No 4
>2xzm_B RPS0E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_B
Probab=100.00 E-value=5.3e-85 Score=603.84 Aligned_cols=222 Identities=45% Similarity=0.773 Sum_probs=199.7
Q ss_pred cCCCcHHHHHHHHHcCceeccccCCCCCcccceeeecCCccccCHHHHHHHHHHHHHHHHHhhCCCcEEEEccCchhHHH
Q 021262 11 QLSQKEADIQMMLAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEKLQMAARVIVAIENPGDIIVQSARPYGQRA 90 (315)
Q Consensus 11 ~l~~k~~~i~kLLaAgvHlG~~~~n~~M~~YIyg~R~dGi~IINL~kT~ekL~~Aa~~I~~I~n~~~IlfVstr~~~q~a 90 (315)
+|+|+++++++||++|+||||++|||+|++||||+|+||||||||+|||++|++|+++|+.++++++|||||||+++|++
T Consensus 2 ~~~m~~~~~~~lL~AgvH~G~~~wnpkM~~YIy~~R~nGihIIdL~kT~~~L~~A~~~i~~i~~~~~iLfVgtk~~~~~~ 81 (241)
T 2xzm_B 2 ATQRKQDDIKRLLASNCHQATINLNNQMKRYISHKGVNGIHYINIEETWQKIKLAARVIAAVQHPEDVMVVCSRIYGQRA 81 (241)
T ss_dssp CCHHHHHHHHHHHHTTTTEECSCCCGGGTTTEEEECSSSCEEECHHHHHHHHHHHHHHHHHCSSGGGEEEECCSHHHHHH
T ss_pred cccccHHHHHHHHhcCeEeccCcCCCCCcccEeeeeCCCcEEEeHHHHHHHHHHHHHHHHHHhCCCeEEEEECCHHHHHH
Confidence 67999999999999999999999999999999999977999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhCCccc-cCCccCCccCccccccccCCceEEEeCCCCCchhHHHhhhcCCCceeeccCCCCCCcceEEecCCC
Q 021262 91 VLKFAKYTHAHAI-AGRHTPGTFTNQMQTSFNEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANN 169 (315)
Q Consensus 91 V~kfA~~tga~~i-~grw~pGtLTN~~~~~f~eP~lLIV~DP~~d~qaI~EAs~lnIPtIAL~DTds~~~~VD~pIP~Nn 169 (315)
|++||+++|++|| ++||+||+||||++..|++||+|||+||+.||+||+||+++||||||||||||||++|||||||||
T Consensus 82 V~~~A~~~g~~yv~~~RWlgG~LTN~~t~~~~~PdlliV~Dp~~e~~ai~EA~~l~IPvIalvDTn~~p~~VDy~IP~Nd 161 (241)
T 2xzm_B 82 AIKFAGYTHCKSTSSSRWTPGTLTNYQTLKYEEPRVLIVTDPRSDFQAIKEASYVNIPVIALCDSDSPLAYVDVVIPCNN 161 (241)
T ss_dssp HHHHHHHHTCBCCCCSSCCTTTTTCTTCTTCCCCSEEEESCTTTTHHHHHHHTTTTCCEEECCCSSSCCTTCCEECCSCC
T ss_pred HHHHHHHhCCEEeccccccCCcccCccccccCCCCEEEEECCCcchHHHHHHHHhCCCEEEEecCCCCcccccEEEeCCC
Confidence 9999999999999 999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcchHHHHHHHHHHHHHHhhcCCCCCCCcccccccccccCcccccchhhhhHhhhhhhhhccc
Q 021262 170 KGKHSIGCLFWLLARMVLQMRGTIRPGHKWDVMVDLFFYREPEETKQAEEEETAAIDYATAEYN 233 (315)
Q Consensus 170 ds~~SI~li~~lLaraVl~~rg~i~~~~~w~v~~dl~fyrdpee~e~~e~~~~~~~~~~~~~~~ 233 (315)
||.+||+|++|+|+++|+++||+++|+++|+|||||||||||||+|++||++ ++.+.+++||+
T Consensus 162 ds~~SI~Li~~~la~ail~~rg~i~~~~~~~v~~dlf~~rdpee~~~~~~~~-~~~~~~~~~~~ 224 (241)
T 2xzm_B 162 RSTESISMIYWMIAREVKILRGELSKDEEWEVMVDLFYHKTLPTAEQKEAEE-EEGAEGAEEKV 224 (241)
T ss_dssp SSHHHHHHHHHHHHHHHHHHHTSSCSSSCCCSCTTTTSCCCCC---------------------
T ss_pred cccchHHHHHHHHHHHHHHhhCccCCCCCCCcCcceeeecCHHHhhhhhhhh-hcccccchhcc
Confidence 9999999999999999999999999999999999999999999999988744 45677888886
No 5
>3bch_A 40S ribosomal protein SA; laminin receptor, P40 ribosomal protein, acetylation, cytoplasm, phosphorylation, polymorphism; 2.15A {Homo sapiens}
Probab=100.00 E-value=2.3e-84 Score=602.20 Aligned_cols=222 Identities=62% Similarity=1.032 Sum_probs=195.2
Q ss_pred CCCCCCCCCccCCCcHHHHHHHHHcCceeccccCCCCCcccceeeecCCccccCHHHHHHHHHHHHHHHHHhhCCCcEEE
Q 021262 1 MATGTATAPRQLSQKEADIQMMLAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEKLQMAARVIVAIENPGDIIV 80 (315)
Q Consensus 1 ~~~~~~~~~~~l~~k~~~i~kLLaAgvHlG~~~~n~~M~~YIyg~R~dGi~IINL~kT~ekL~~Aa~~I~~I~n~~~Ilf 80 (315)
|++++....++++|+++++++||++|+||||++|||+|++||||+|+||||||||+|||++|++|+++|+.++++++|||
T Consensus 30 ~~~~~~~~~~~l~~k~~~v~~LL~AgvH~Gh~~wnpkM~~YIyg~R~nGIhIIdL~kT~~~L~~A~~~i~~~~~~~~iLf 109 (253)
T 3bch_A 30 MASGSSGALDVLQMKEEDVLKFLAAGTHLGGTNLDFQMEQYIYKRKSDGIYIINLKRTWEKLLLAARAIVAIENPADVSV 109 (253)
T ss_dssp ------------CCCHHHHHHHHHHTTTBCCSCCCGGGGGGEEEECTTSCEEECHHHHHHHHHHHHHHHHTCSSGGGEEE
T ss_pred hhhccccCCccccCcHHHHHHHHHcCEEecCCcCCccccccEEeecCCCcEEEeHHHHHHHHHHHHHHHHHHhCCCeEEE
Confidence 44444445789999999999999999999999999999999999997799999999999999999999997799999999
Q ss_pred EccCchhHHHHHHHHHHhCCccccCCccCCccCccccccccCCceEEEeCCCCCchhHHHhhhcCCCceeeccCCCCCCc
Q 021262 81 QSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRY 160 (315)
Q Consensus 81 Vstr~~~q~aV~kfA~~tga~~i~grw~pGtLTN~~~~~f~eP~lLIV~DP~~d~qaI~EAs~lnIPtIAL~DTds~~~~ 160 (315)
||||+++|++|++||++||++||++||+||+||||++..|++||+|||+||+.|++||+||+++||||||||||||||++
T Consensus 110 VgTk~~aq~~V~~~A~~~g~~yv~~RWlgG~LTN~~~~~f~~PdlliV~Dp~~e~~AI~EA~~lgIPvIalvDTn~dp~~ 189 (253)
T 3bch_A 110 ISSRNTGQRAVLKFAAATGATPIAGRFTPGTFTNQIQAAFREPRLLVVTDPRADHQPLTEASYVNLPTIALCNTDSPLRY 189 (253)
T ss_dssp EECSHHHHHHHHHHHHHHCCEEEESCCCTTTTTCCSCSTTCSCSEEEESCTTTTHHHHHHHHHTTCCEEEEECTTCCCTT
T ss_pred EeCCHHHHHHHHHHHHHhCCeeecceecCCcccCccccccCCCCEEEEECCCccchHHHHHHHhCCCEEEEEcCCCCccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceEEecCCCCCcchHHHHHHHHHHHHHHhhcCCCCCCCcccccccccccCcccccchhhhhH
Q 021262 161 VDIGIPANNKGKHSIGCLFWLLARMVLQMRGTIRPGHKWDVMVDLFFYREPEETKQAEEEET 222 (315)
Q Consensus 161 VD~pIP~Nnds~~SI~li~~lLaraVl~~rg~i~~~~~w~v~~dl~fyrdpee~e~~e~~~~ 222 (315)
|||||||||||.+||+|++|+|+++|+++||++++++||+|||||||||||||+||+||+++
T Consensus 190 VDy~IP~Ndds~~SI~Li~~lla~aIl~grg~i~~~~~w~v~~dlf~yrdpee~~~~~~~~~ 251 (253)
T 3bch_A 190 VDIAIPCNNKGAHSVGLMWWMLAREVLRMRGTISREHPWEVMPDLYFYRDPEEIEKEEQAAA 251 (253)
T ss_dssp CSEEEESCCSSHHHHHHHHHHHHHHHHHHHTSSCSSSCCSSCGGGGCCC-------------
T ss_pred CceEeecCCcchhhHHHHHHHHHHHHHHhcCccCCCCCCccCceeeeecCHHHHhhhhhhhh
Confidence 99999999999999999999999999999999999999999999999999999999987654
No 6
>3j20_B 30S ribosomal protein S2P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=100.00 E-value=5.3e-73 Score=512.04 Aligned_cols=192 Identities=40% Similarity=0.731 Sum_probs=187.8
Q ss_pred HHHHHHHHcCceeccccCCCCCcccceeeecCCccccCHHHHHHHHHHHHHHHHHhhCCCcEEEEccCchhHHHHHHHHH
Q 021262 17 ADIQMMLAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEKLQMAARVIVAIENPGDIIVQSARPYGQRAVLKFAK 96 (315)
Q Consensus 17 ~~i~kLLaAgvHlG~~~~n~~M~~YIyg~R~dGi~IINL~kT~ekL~~Aa~~I~~I~n~~~IlfVstr~~~q~aV~kfA~ 96 (315)
.++++||+||+||||+++||+|++||||+|+||||||||+|||++|++|+++|+.+ ++++|||||||+++|++|+|||+
T Consensus 7 v~~~~lL~AgvH~Gh~~~np~M~~YIy~~r~~Gi~IIdL~kT~~~L~~A~~~i~~~-~~~~ilfV~tk~~~~~~V~k~A~ 85 (202)
T 3j20_B 7 VPLDQYLAAGVHIGTQQKTKDMKKFIYRVRQDGLYVLDVRKTDERLKVAGKFLAKF-EPQSILAVSVRLYGQKPVKKFGE 85 (202)
T ss_dssp THHHHHHHHTCSBCCSCCCTGGGGGEEEECTTSCEEECHHHHHHHHHHHHHHHHHS-CSSCEEEECCCTTTHHHHHHHHH
T ss_pred ccHHHHHhcCccccCCcCCCCccccEeeeeCCCCEEECHHHHHHHHHHHHHHHHhh-CCCeEEEEecChHHHHHHHHHHH
Confidence 57999999999999999999999999999978999999999999999999999988 89999999999999999999999
Q ss_pred HhCCccccCCccCCccCccccccccCCceEEEeCCCCCchhHHHhhhcCCCceeeccCCCCCCcceEEecCCCCCcchHH
Q 021262 97 YTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIG 176 (315)
Q Consensus 97 ~tga~~i~grw~pGtLTN~~~~~f~eP~lLIV~DP~~d~qaI~EAs~lnIPtIAL~DTds~~~~VD~pIP~Nnds~~SI~ 176 (315)
++|++||++||+||+||||++.+|++||+|||+||+.|||||+||+++||||||||||||||++|||+|||||||.+||+
T Consensus 86 ~~g~~~v~~rw~gG~lTN~~~~~~~~Pdllvv~Dp~~d~~ai~EA~~l~IP~Ial~DTn~~p~~Vd~~IP~Ndds~~Si~ 165 (202)
T 3j20_B 86 VTGARAIPGRFLPGTMTNPAVKNFFEPDVLIVTDPRADHQAMREAVEIGIPIVALVDTENLLSYVDLAIPTNNKGRKALA 165 (202)
T ss_dssp HHSCCCCCSSCCSSSSSCSSSSSCCCCSEEEESCTTTSHHHHHHHHHHTCCEEEEECTTCCCTTCCEEEECCCSSHHHHH
T ss_pred HHCCceeCceecCCCcccHhHHhccCCCeEEEeCCccchHHHHHHHHcCCCEEEEEcCCCCccccCEEEeCCCCcHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhcCCCCCCCccccccccccc
Q 021262 177 CLFWLLARMVLQMRGTIRPGHKWDVMVDLFFYR 209 (315)
Q Consensus 177 li~~lLaraVl~~rg~i~~~~~w~v~~dl~fyr 209 (315)
|+||+|+++|+++||++|++.+|++++|.|.-+
T Consensus 166 Li~~~la~avl~~rg~i~~~~~~~~~~~~f~~~ 198 (202)
T 3j20_B 166 LIYWILAREILYNRGEIQSREDFKIPVEEFEMK 198 (202)
T ss_dssp HHHHHHHHHHHHHHTSSCSSSCCSSCTTTTSCC
T ss_pred HHHHHHHHHHHHhcCCcCCcCCCCCCHHHHhhh
Confidence 999999999999999999999999999999654
No 7
>1vi6_A 30S ribosomal protein S2P; structural genomics, ribosome; 1.95A {Archaeoglobus fulgidus} SCOP: c.23.15.1 PDB: 1vi5_A
Probab=100.00 E-value=2.2e-72 Score=509.94 Aligned_cols=191 Identities=34% Similarity=0.615 Sum_probs=185.3
Q ss_pred HHHHHHHHcCceeccccCCCCCcccceeeecCCccccCHHHHHHHHHHHHHHHHHhhCCCcEEEEccCchhHHHHHHHHH
Q 021262 17 ADIQMMLAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEKLQMAARVIVAIENPGDIIVQSARPYGQRAVLKFAK 96 (315)
Q Consensus 17 ~~i~kLLaAgvHlG~~~~n~~M~~YIyg~R~dGi~IINL~kT~ekL~~Aa~~I~~I~n~~~IlfVstr~~~q~aV~kfA~ 96 (315)
+++++||+||+||||+++||+|++||||+|+||||||||+|||++|++|+++|+.+ ++++|||||||+++|++|++||+
T Consensus 11 ~~~~~lL~AgvH~Gh~~~npkM~~YIy~~R~~gihIIdL~kT~~~L~~A~~~i~~i-~~~~iLfVgTk~~~~~~V~~~A~ 89 (208)
T 1vi6_A 11 VPPDDYLAAGVHIGTQIKTGDMKKFIFKVRQDGLYVLDIRKLDERIRVAAKFLSRY-EPSKILLVAARQYAHKPVQMFSK 89 (208)
T ss_dssp SCHHHHHHHTTTBCCSCCCTTTGGGEEEECTTSCEEECHHHHHHHHHHHHHHHTTS-CGGGEEEEECSGGGHHHHHHHHH
T ss_pred hhHHHHHhcCeEEcCCcCCCCccceEEeeeCCCcEEEcHHHHHHHHHHHHHHHHhc-CCCEEEEEeCCHHHHHHHHHHHH
Confidence 68999999999999999999999999999977999999999999999999999999 99999999999999999999999
Q ss_pred HhCCccccCCccCCccCccccccccCCceEEEeCCCCCchhHHHhhhcCCCceeeccCCCCCCcceEEecCCCCCcchHH
Q 021262 97 YTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIG 176 (315)
Q Consensus 97 ~tga~~i~grw~pGtLTN~~~~~f~eP~lLIV~DP~~d~qaI~EAs~lnIPtIAL~DTds~~~~VD~pIP~Nnds~~SI~ 176 (315)
++|++||++||+||+||||++.+|++||+|||+||+.|++||+||+++||||||||||||||++|||||||||||.+||+
T Consensus 90 ~~g~~~v~~rwlgG~LTN~~~~~f~~PdlliV~Dp~~e~~ai~EA~~l~IPvIalvDTn~~p~~Vd~~IP~Ndds~~SI~ 169 (208)
T 1vi6_A 90 VVGSDYIVGRFIPGTLTNPMLSEYREPEVVFVNDPAIDKQAVSEATAVGIPVVALCDSNNSSADVDLVIPTNNKGRRALA 169 (208)
T ss_dssp HHCCEEEESSCCTTTTTCTTSTTCCCCSEEEESCTTTTHHHHHHHHHTTCCEEEEECTTCCCTTCSEEEESCCSCHHHHH
T ss_pred HhCCeeecCEECCCcccChhhHhhCCCCEEEEECCCcchhHHHHHHHhCCCEEEEeCCCCCccccCEEEeCCCCchhHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhcCCCCCCCcccccccccccCccc
Q 021262 177 CLFWLLARMVLQMRGTIRPGHKWDVMVDLFFYREPEE 213 (315)
Q Consensus 177 li~~lLaraVl~~rg~i~~~~~w~v~~dl~fyrdpee 213 (315)
|++|+|+++|+++||+++ +||||+||||.++.
T Consensus 170 Li~~~la~ail~grg~~~-----~~~~d~f~~~~~~~ 201 (208)
T 1vi6_A 170 IVYWLLAREIAKIRGQDF-----TYSIEDFEAELEGG 201 (208)
T ss_dssp HHHHHHHHHHHHHHTCCC-----CCCHHHHSCCC---
T ss_pred HHHHHHHHHHHHHhCCCC-----CcChhheeeecCCC
Confidence 999999999999999997 89999999999874
No 8
>2vqe_B 30S ribosomal protein S2; tRNA-binding, rRNA-binding, metal-binding, zinc-finger, translation; HET: TM2 PAR; 2.5A {Thermus thermophilus} SCOP: c.23.15.1 PDB: 1gix_E* 1hnw_B* 1hnx_B* 1hnz_B* 1hr0_B 1ibk_B* 1ibl_B* 1ibm_B 1j5e_B 1jgo_E* 1jgp_E* 1jgq_E* 1ml5_E* 1n32_B* 1n33_B* 1n34_B 1n36_B 1xmo_B* 1xmq_B* 1xnq_B* ...
Probab=100.00 E-value=1.4e-63 Score=464.56 Aligned_cols=180 Identities=28% Similarity=0.386 Sum_probs=169.8
Q ss_pred HHHHHHHHcCceeccc--cCCCCCcccceeeecCCccccCHHHHHHHHHHHHHHHHHh-hCCCcEEEEccCchhHHHHHH
Q 021262 17 ADIQMMLAAEVHLGTK--NCDFQMERYVFKRRNDGIYIINLGKTWEKLQMAARVIVAI-ENPGDIIVQSARPYGQRAVLK 93 (315)
Q Consensus 17 ~~i~kLLaAgvHlG~~--~~n~~M~~YIyg~R~dGi~IINL~kT~ekL~~Aa~~I~~I-~n~~~IlfVstr~~~q~aV~k 93 (315)
+++++||+||+||||+ +|||+|++||||+| ||||||||.+|+++|++|+++|..+ +++++|||||||++++++|++
T Consensus 5 i~~~~LL~AgvH~Gh~t~~wnpkM~~YIyg~R-ngihIIdL~kT~~~L~~A~~~i~~~a~~gg~iLfVgTk~~a~~~V~~ 83 (256)
T 2vqe_B 5 ITVKELLEAGVHFGHERKRWNPKFARYIYAER-NGIHIIDLQKTMEELERTFRFIEDLAMRGGTILFVGTKKQAQDIVRM 83 (256)
T ss_dssp -CCCSTTCSSTTCCCBSSSCCGGGSTTEEEEE-TTEEEECHHHHHHHHHHHHHHHHHHHTTTCCEEEECCSSSSTTTTTT
T ss_pred ccHHHHHHcCeeeccCcCCCCCccccceeccc-CCeEEEeHHHHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHH
Confidence 6788999999999985 79999999999999 6999999999999999999999985 999999999999999999999
Q ss_pred HHHHhCCccccCCccCCccCccccc-----------------cc-----------------------------cCCceEE
Q 021262 94 FAKYTHAHAIAGRHTPGTFTNQMQT-----------------SF-----------------------------NEPRLLI 127 (315)
Q Consensus 94 fA~~tga~~i~grw~pGtLTN~~~~-----------------~f-----------------------------~eP~lLI 127 (315)
||++||++||++||+||+||||++. .| ++||+||
T Consensus 84 ~A~~~g~~yv~~RWlgG~LTN~~ti~~~i~~l~~le~~~~~g~f~~l~Kke~~~~~r~~~kL~k~lgGik~m~~~Pdll~ 163 (256)
T 2vqe_B 84 EAERAGMPYVNQRWLGGMLTNFKTISQRVHRLEELEALFASPEIEERPKKEQVRLKHELERLQKYLSGFRLLKRLPDAIF 163 (256)
T ss_dssp TTTSSSCCEECSCCCTTTTTTHHHHHHHHHHHHHHHHHTTSTTSSCSCHHHHTTHHHHHHHHHHHSTTGGGCSSCCSEEE
T ss_pred HHHHhCCeeecCeeCCCcccCHHHHHHHHHHHHHHHHHhhcCccccccHHHHHHHHHHHHHHHHhhcCccccccCCCEEE
Confidence 9999999999999999999999874 22 6999999
Q ss_pred EeCCCCCchhHHHhhhcCCCceeeccCCCCCCcceEEecCCCCCcchHHHHHHHHHHHHHHhhcCCCCCCCc
Q 021262 128 LTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTIRPGHKW 199 (315)
Q Consensus 128 V~DP~~d~qaI~EAs~lnIPtIAL~DTds~~~~VD~pIP~Nnds~~SI~li~~lLaraVl~~rg~i~~~~~w 199 (315)
|+||+.||+||+||+++||||||||||||||++|||||||||||.+||+|++|+|+++|+++++. +.++|
T Consensus 164 V~Dp~~e~~Ai~EA~~l~IPvIaivDTn~dp~~VdypIP~NDds~~sI~Li~~~la~ai~~g~~~--r~~~~ 233 (256)
T 2vqe_B 164 VVDPTKEAIAVREARKLFIPVIALADTDSDPDLVDYIIPGNDDAIRSIQLILSRAVDLIIQARGG--VVEPS 233 (256)
T ss_dssp ESCTTTTHHHHHHHHHTTCCCEECCCTTSCGGGCSEECCSCSSCHHHHHHHHHHHHHHHHTTTSC--CCCSC
T ss_pred EeCCccchHHHHHHHHcCCCEEEEecCCCCchhcceEeecCCchHHHHHHHHHHHHHHHHHHHhh--hhccc
Confidence 99999999999999999999999999999999999999999999999999999999999998875 55555
No 9
>3bbn_B Ribosomal protein S2; small ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea} SCOP: i.1.1.1
Probab=100.00 E-value=1.1e-61 Score=446.04 Aligned_cols=175 Identities=25% Similarity=0.377 Sum_probs=166.6
Q ss_pred HHHHHHHHcCceecc--ccCCCCCcccceeeecCCccccCHHHHHHHHHHHHHHHHHh-hCCCcEEEEccCchhHHHHHH
Q 021262 17 ADIQMMLAAEVHLGT--KNCDFQMERYVFKRRNDGIYIINLGKTWEKLQMAARVIVAI-ENPGDIIVQSARPYGQRAVLK 93 (315)
Q Consensus 17 ~~i~kLLaAgvHlG~--~~~n~~M~~YIyg~R~dGi~IINL~kT~ekL~~Aa~~I~~I-~n~~~IlfVstr~~~q~aV~k 93 (315)
+++++||+||+|||| ++|||+|++||||+| ||||||||.+|+++|++|+++|..+ +++++|||||||++++++|++
T Consensus 4 i~~~~lL~agvH~Gh~t~~wnpkM~~yIy~~R-ngihIIdL~kT~~~L~~A~~~i~~~~~~~~~iLfVgTk~~~~~~V~~ 82 (231)
T 3bbn_B 4 INLEEMMEAGVHFGHGTRKWNPRMSPYISAKC-KGIHIINLTRTARFLSEACDLVFDASSRGKQFLIVGTKNKAADSVAR 82 (231)
T ss_dssp CSSHHHHHTSSSSCCCSSCCCGGGGGGEEEEE-TTEEEECHHHHHHHTHHHHHHSHHHHTTTCCEEEECCCTTTHHHHHH
T ss_pred CCHHHHHHhCeEecCCcCcCCcccccceeccc-CCcEEeeHHHHHHHHHHHHHHHHHHHhCCCEEEEEeCcHHHHHHHHH
Confidence 478899999999998 679999999999999 5999999999999999999999975 999999999999999999999
Q ss_pred HHHHhCCccccCCccCCccCccccc-----cc-----------------------------------------cCCceEE
Q 021262 94 FAKYTHAHAIAGRHTPGTFTNQMQT-----SF-----------------------------------------NEPRLLI 127 (315)
Q Consensus 94 fA~~tga~~i~grw~pGtLTN~~~~-----~f-----------------------------------------~eP~lLI 127 (315)
+|++||++||++||+||+||||++. +| ++||+||
T Consensus 83 ~A~~~g~~yv~~rWlgG~LTN~~ti~~~i~~~~~l~~~~~~g~~~~l~Kke~~~~~r~~~kl~k~lgGik~m~~~Pdll~ 162 (231)
T 3bbn_B 83 AAIRARCHYVNKKWLGGMLTNWSTTETRLHKFRDLRMEQTAGRLARLPKRDAAVVKRQLSHLQTYLGGIKYMTGLPDIVI 162 (231)
T ss_dssp HHHHHTCEECCSSCCSCSSSCHHHHHHHHHHHHHHHHSTTSTTTTTSCHHHHHHHHHHHHHHTTSTTSTTSCCSCCSEEE
T ss_pred HHHHhCCccccccccCCCCcCHHHHHHHHHHHHHHHHHHhcCccccCCHHHHHHHHHHHHHHHHhhhcccccccCCCEEE
Confidence 9999999999999999999999873 22 2799999
Q ss_pred EeCCCCCchhHHHhhhcCCCceeeccCCCCCCcceEEecCCCCCcchHHHHHHHHHHHHHHhhcC
Q 021262 128 LTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRGT 192 (315)
Q Consensus 128 V~DP~~d~qaI~EAs~lnIPtIAL~DTds~~~~VD~pIP~Nnds~~SI~li~~lLaraVl~~rg~ 192 (315)
|+||+.||+||+||+++||||||||||||||++|||||||||||.+||.|++++|+++|+++++.
T Consensus 163 v~Dp~~e~~ai~EA~~l~IPvIaivDTn~dp~~Vdy~IP~Ndds~~si~li~~~la~ai~~g~~~ 227 (231)
T 3bbn_B 163 IVDQQEEYTALRECITLGIPTICLIDTNCNPDLADISIPANDDAIASIRLILTKLVFAICEGRSS 227 (231)
T ss_dssp ESCTTTTHHHHHHHHTTTCCEEECCCSSSCCSSCSEECCCCSSSHHHHHHHHHHHHHHHHHTSSC
T ss_pred EeCCccccHHHHHHHHhCCCEEEEecCCCCccceeEEeeCCCccHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999864
No 10
>3r8n_B 30S ribosomal protein S2; protein biosynthesis, RNA, tRNA, transfer RNA, 16S ribosomal subunit, RRF; 3.00A {Escherichia coli} PDB: 2ykr_B 3fih_B* 3j18_B* 2wwl_B 3oar_B 3oaq_B 3ofb_B 3ofa_B 3ofp_B 3ofx_B 3ofy_B 3ofo_B 3r8o_B 4a2i_B 4gd1_B 4gd2_B 3i1m_B 1vs7_B* 3e1a_B 3e1c_B ...
Probab=100.00 E-value=1.2e-62 Score=449.13 Aligned_cols=168 Identities=29% Similarity=0.362 Sum_probs=161.1
Q ss_pred HHHcCceecccc--CCCCCcccceeeecCCccccCHHHHHHHHHHHHHHHHHh-hCCCcEEEEccCchhHHHHHHHHHHh
Q 021262 22 MLAAEVHLGTKN--CDFQMERYVFKRRNDGIYIINLGKTWEKLQMAARVIVAI-ENPGDIIVQSARPYGQRAVLKFAKYT 98 (315)
Q Consensus 22 LLaAgvHlG~~~--~n~~M~~YIyg~R~dGi~IINL~kT~ekL~~Aa~~I~~I-~n~~~IlfVstr~~~q~aV~kfA~~t 98 (315)
||+||+||||++ |||+|++||||+| ||||||||++||++|++|+++|..+ +++++|||||||+++|++|++||+++
T Consensus 1 lL~AgvH~Gh~~~~wnp~M~~yIy~~R-~gihIIdL~kT~~~L~~A~~~i~~~~~~~~~iLfVgTk~~~~~~V~~~A~~~ 79 (218)
T 3r8n_B 1 MLKAGVHFGHQTRYWNPKMKPFIFGAR-NKVHIINLEKTVPMFNEALAELNKIASRKGKILFVGTKRAASEAVKDAALSC 79 (218)
T ss_dssp CCCCSSCSCCCSSCCCGGGGGGBCCCT-TSSCCBCTTTSGGGTTTHHHHHHHHHHTTCCCCEECCCTTTTTTTTTHHHHS
T ss_pred CccccccccCCCCCCCCCccccccccc-CCceEEcHHHHHHHHHHHHHHHHHHHhCCCEEEEEeCChHHHHHHHHHHHHc
Confidence 689999999876 9999999999999 5999999999999999999999996 99999999999999999999999999
Q ss_pred CCccccCCccCCccCccccc-----------------cc-----------------------------cCCceEEEeCCC
Q 021262 99 HAHAIAGRHTPGTFTNQMQT-----------------SF-----------------------------NEPRLLILTDPR 132 (315)
Q Consensus 99 ga~~i~grw~pGtLTN~~~~-----------------~f-----------------------------~eP~lLIV~DP~ 132 (315)
|++||++||+||+||||++. .| ++||+|||+||+
T Consensus 80 g~~yv~~rWlgG~LTN~~ti~~~i~~l~~le~~~~~~~f~~l~Kke~~~~~re~~kl~k~lgGik~m~~~Pdllvv~Dp~ 159 (218)
T 3r8n_B 80 DQFFVNHRWLGGMLTNWKTVRQSIKRLKDLETQSQDGTFDKLTKKEALMRTRELEKLENSLGGIKDMGGLPDALFVIDAD 159 (218)
T ss_dssp SCCEECSSCCSSSSTTTTTTHHHHHHHHHHHTTTSSSSCSSSCTTTTTTTHHHHHHHHSSSSSSSSCSSCCCSCEEEETG
T ss_pred CCeeECCccCCCCccCHHHHHHHHHHHHHHHHHHhcchhhhccHHHHHHHHHHHHHHHHhhccccccccCCCeEEecCcc
Confidence 99999999999999999873 13 589999999999
Q ss_pred CCchhHHHhhhcCCCceeeccCCCCCCcceEEecCCCCCcchHHHHHHHHHHHHHHhh
Q 021262 133 TDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMR 190 (315)
Q Consensus 133 ~d~qaI~EAs~lnIPtIAL~DTds~~~~VD~pIP~Nnds~~SI~li~~lLaraVl~~r 190 (315)
.||+||+||+++||||||||||||||++|||||||||||.+||+|++++|+++|++++
T Consensus 160 ~e~~ai~Ea~~l~IP~IalvDTn~~p~~Vdy~IP~Ndds~~si~Li~~~la~ai~~g~ 217 (218)
T 3r8n_B 160 HEHIAIKEANNLGIPVFAIVDTNSDPDGVDFVIPGNDDAIRAVTLYLGAVAATVREGR 217 (218)
T ss_dssp GGHHHHHHHHHHTCCCEEECCSSSCCSSCSEECCSCSSSHHHHHHHHHHHHHHHSCSC
T ss_pred cccHHHHHHHHhCCCEEEEEeCcCCCcccceEeecCCccHHHHHHHHHHHHHHHHhhc
Confidence 9999999999999999999999999999999999999999999999999999999875
No 11
>2yva_A DNAA initiator-associating protein DIAA; intermolecular disulfide bonding, putative phosphosugar BIND protein, DNAA binding protein; 1.85A {Escherichia coli}
Probab=95.80 E-value=0.059 Score=45.85 Aligned_cols=135 Identities=14% Similarity=0.119 Sum_probs=72.0
Q ss_pred cCHHHHHHHHH----HHHHHHHH-hhCCCcEEEEccCchhHHHHHHHHHHhCCcc------ccCCccCC----------c
Q 021262 53 INLGKTWEKLQ----MAARVIVA-IENPGDIIVQSARPYGQRAVLKFAKYTHAHA------IAGRHTPG----------T 111 (315)
Q Consensus 53 INL~kT~ekL~----~Aa~~I~~-I~n~~~IlfVstr~~~q~aV~kfA~~tga~~------i~grw~pG----------t 111 (315)
=+|.+|.+.|. .+++.++. +.+.++|.++|....+ .+...|+.+....+ +.-....+ .
T Consensus 14 ~~l~~t~~~l~~~i~~~~~~~~~~i~~a~~I~i~G~G~S~-~~A~~~~~~l~~~~~~~~~g~~~~~~~~~~~~~~a~~~d 92 (196)
T 2yva_A 14 QTQIAAAEALPDAISRAAMTLVQSLLNGNKILCCGNGTSA-ANAQHFAASMINRFETERPSLPAIALNTDNVVLTAIAND 92 (196)
T ss_dssp HHHHHHHHHSHHHHHHHHHHHHHHHHTTCCEEEEESTHHH-HHHHHHHHHHHTCSSSCCCCCCEEESSCCHHHHHHHTTS
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHcCCEEEEEeCchhh-HHHHHHHHHHhccccccCCCCceEeecCchHHHHHHhcC
Confidence 35667776553 35555554 5778899999987543 23334444332111 00011111 0
Q ss_pred cC------ccccccccCCceEEEeCCCCC----chhHHHhhhcCCCceeeccCC-CCCC-c---ceEEe--cCCCCCcc-
Q 021262 112 FT------NQMQTSFNEPRLLILTDPRTD----HQPIKEAALGNIPTIAFCDTD-SPMR-Y---VDIGI--PANNKGKH- 173 (315)
Q Consensus 112 LT------N~~~~~f~eP~lLIV~DP~~d----~qaI~EAs~lnIPtIAL~DTd-s~~~-~---VD~pI--P~Nnds~~- 173 (315)
+. .+......+=|++|++...-+ ..+++.|+..|++||+|++.. +++. + .|+.| |++..+.-
T Consensus 93 ~~~~~~~~~~~~~~~~~~DvvI~iS~SG~t~~~i~~~~~ak~~g~~vI~IT~~~~s~la~~~~~ad~~l~~~~~~~~~~~ 172 (196)
T 2yva_A 93 RLHDEVYAKQVRALGHAGDVLLAISTRGNSRDIVKAVEAAVTRDMTIVALTGYDGGELAGLLGPQDVEIRIPSHRSARIQ 172 (196)
T ss_dssp TTGGGHHHHHHHHHCCTTCEEEEECSSSCCHHHHHHHHHHHHTTCEEEEEECTTCHHHHTTCCTTSEEEECSCSCHHHHH
T ss_pred CCHHHHHHHHHHhcCCCCCEEEEEeCCCCCHHHHHHHHHHHHCCCEEEEEeCCCCchhhhcccCCCEEEEeCCCChhHHH
Confidence 00 000122456688888875444 347788999999999999874 3332 2 45554 44443332
Q ss_pred -hHHHHHHHHHHHHHH
Q 021262 174 -SIGCLFWLLARMVLQ 188 (315)
Q Consensus 174 -SI~li~~lLaraVl~ 188 (315)
+.-+++.+|...+.+
T Consensus 173 ~~~l~~~~~L~~~~~~ 188 (196)
T 2yva_A 173 EMHMLTVNCLCDLIDN 188 (196)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 333445555555543
No 12
>1m3s_A Hypothetical protein YCKF; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.95A {Bacillus subtilis} SCOP: c.80.1.3 PDB: 1viv_A
Probab=95.51 E-value=0.079 Score=44.64 Aligned_cols=120 Identities=16% Similarity=0.145 Sum_probs=68.1
Q ss_pred HHHHHHHHHHhhCCCcEEEEccCchhHHHHHHHHHH---hCCccccCCccCCccCccccccccCCceEEEeCCCCC----
Q 021262 62 LQMAARVIVAIENPGDIIVQSARPYGQRAVLKFAKY---THAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTD---- 134 (315)
Q Consensus 62 L~~Aa~~I~~I~n~~~IlfVstr~~~q~aV~kfA~~---tga~~i~grw~pGtLTN~~~~~f~eP~lLIV~DP~~d---- 134 (315)
+.++++.|. +.++|.|+|....+. +...++.+ .|-.. ...+... .....+=|++|++...-+
T Consensus 27 i~~~~~~i~---~a~~I~i~G~G~S~~-~A~~~~~~l~~~g~~~---~~~~~~~----~~~~~~~d~vI~iS~sG~t~~~ 95 (186)
T 1m3s_A 27 ADQLADHIL---SSHQIFTAGAGRSGL-MAKSFAMRLMHMGFNA---HIVGEIL----TPPLAEGDLVIIGSGSGETKSL 95 (186)
T ss_dssp HHHHHHHHH---HCSCEEEECSHHHHH-HHHHHHHHHHHTTCCE---EETTSTT----CCCCCTTCEEEEECSSSCCHHH
T ss_pred HHHHHHHHH---cCCeEEEEecCHHHH-HHHHHHHHHHhcCCeE---EEeCccc----ccCCCCCCEEEEEcCCCCcHHH
Confidence 444444443 346899988764321 22233332 34221 1122221 223456688888875544
Q ss_pred chhHHHhhhcCCCceeeccC-CCCC-CcceEEe--cCCCCC-----------cc-----hHHHHHHHHHHHHHHhhcC
Q 021262 135 HQPIKEAALGNIPTIAFCDT-DSPM-RYVDIGI--PANNKG-----------KH-----SIGCLFWLLARMVLQMRGT 192 (315)
Q Consensus 135 ~qaI~EAs~lnIPtIAL~DT-ds~~-~~VD~pI--P~Nnds-----------~~-----SI~li~~lLaraVl~~rg~ 192 (315)
..++++|+..|++||+|++. +|++ ++.|+.| |+.... .. +.-+++.+|...+...+|.
T Consensus 96 ~~~~~~ak~~g~~vi~IT~~~~s~l~~~ad~~l~~~~~~~~~~~~~~~s~~~~~s~~~~~~~~~~d~L~~~~~~~~~~ 173 (186)
T 1m3s_A 96 IHTAAKAKSLHGIVAALTINPESSIGKQADLIIRMPGSPKDQSNGSYKTIQPMGSLFEQTLLLFYDAVILKLMEKKGL 173 (186)
T ss_dssp HHHHHHHHHTTCEEEEEESCTTSHHHHHCSEEEECSCCSCC-----CCCCSSTTHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHCCCEEEEEECCCCCchHHhCCEEEEeCCccccCCCCcccccccCccHHHHHHHHHHHHHHHHHHHHcCC
Confidence 34778999999999999986 4444 2345544 544332 11 3356678888888777665
No 13
>1vim_A Hypothetical protein AF1796; structural genomics, unknown function; 1.36A {Archaeoglobus fulgidus} SCOP: c.80.1.3
Probab=94.84 E-value=0.14 Score=44.29 Aligned_cols=89 Identities=16% Similarity=0.107 Sum_probs=51.1
Q ss_pred hhCCCcEEEEccCchhHHHHHHHHHH---hCCccccCCccCCccCccccccccCCceEEEeCCCCC----chhHHHhhhc
Q 021262 72 IENPGDIIVQSARPYGQRAVLKFAKY---THAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTD----HQPIKEAALG 144 (315)
Q Consensus 72 I~n~~~IlfVstr~~~q~aV~kfA~~---tga~~i~grw~pGtLTN~~~~~f~eP~lLIV~DP~~d----~qaI~EAs~l 144 (315)
|.+.++|.|++....+. +...|+.+ .|-.. .+..... ...+.+=|++|++.-.-+ ..+++.|+..
T Consensus 44 i~~a~~I~i~G~G~S~~-~A~~~~~~l~~~g~~~---~~~~~~~----~~~~~~~DvvI~iS~SG~t~~~i~~~~~ak~~ 115 (200)
T 1vim_A 44 IDSARSIFVIGAGRSGY-IAKAFAMRLMHLGYTV---YVVGETV----TPRITDQDVLVGISGSGETTSVVNISKKAKDI 115 (200)
T ss_dssp HHHSSCEEEECSHHHHH-HHHHHHHHHHHTTCCE---EETTSTT----CCCCCTTCEEEEECSSSCCHHHHHHHHHHHHH
T ss_pred HhcCCEEEEEEecHHHH-HHHHHHHHHHhcCCeE---EEeCCcc----ccCCCCCCEEEEEeCCCCcHHHHHHHHHHHHC
Confidence 44456899998875332 33444444 23221 1122211 223456688888874444 3467888999
Q ss_pred CCCceeeccCC-CCC-CcceEEecCC
Q 021262 145 NIPTIAFCDTD-SPM-RYVDIGIPAN 168 (315)
Q Consensus 145 nIPtIAL~DTd-s~~-~~VD~pIP~N 168 (315)
|++||+|++.. |++ ++.|+.|.+.
T Consensus 116 g~~vI~IT~~~~s~La~~ad~~l~~~ 141 (200)
T 1vim_A 116 GSKLVAVTGKRDSSLAKMADVVMVVK 141 (200)
T ss_dssp TCEEEEEESCTTSHHHHHCSEEEECC
T ss_pred CCeEEEEECCCCChHHHhCCEEEEEC
Confidence 99999999864 444 2456655443
No 14
>1nri_A Hypothetical protein HI0754; structural genomics, haemophilus influ PSI, protein structure initiative, midwest center for struc genomics; 1.90A {Haemophilus influenzae} SCOP: c.80.1.3
Probab=94.71 E-value=0.13 Score=47.89 Aligned_cols=148 Identities=18% Similarity=0.216 Sum_probs=87.7
Q ss_pred CHHHHHHHHHHHHHHHHH-hhCCCcEEEEccCchhHHHHHHHH---HHhCCc--cccCCccCCcc---------Cccc--
Q 021262 54 NLGKTWEKLQMAARVIVA-IENPGDIIVQSARPYGQRAVLKFA---KYTHAH--AIAGRHTPGTF---------TNQM-- 116 (315)
Q Consensus 54 NL~kT~ekL~~Aa~~I~~-I~n~~~IlfVstr~~~q~aV~kfA---~~tga~--~i~grw~pGtL---------TN~~-- 116 (315)
++.+|.+.|..++..+.. +.+.++|.|++....+.-+..-+. ...|.. .+.+-..+|.- ....
T Consensus 49 ai~~t~~~i~~~i~~i~~~l~~a~rI~~~G~G~S~~lA~~~a~~~~~~~g~~~~~~~~l~~~g~~a~~~a~e~~ed~~~~ 128 (306)
T 1nri_A 49 AIESCLPQISLAVEQIVQAFQQGGRLIYIGAGTSGRLGVLDASECPPTFGVSTEMVKGIIAGGECAIRHPVEGAEDNTKA 128 (306)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCCEEEEESHHHHHHHHHHHHHHHHHHCCCTTSEEEEETTCTHHHHSCCTTGGGCTTH
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCEEEEEeccHhHHHHHHHHHhcccccCCCHHHHHHHHhcchHHHhhhhhcccCcHHH
Confidence 567888888777777765 588899999988765543322111 122321 11111122211 1111
Q ss_pred ------cccccCCceEEEeCCCCC----chhHHHhhhcCCCceeeccCC-CCC-CcceEEecCCC--C---------Ccc
Q 021262 117 ------QTSFNEPRLLILTDPRTD----HQPIKEAALGNIPTIAFCDTD-SPM-RYVDIGIPANN--K---------GKH 173 (315)
Q Consensus 117 ------~~~f~eP~lLIV~DP~~d----~qaI~EAs~lnIPtIAL~DTd-s~~-~~VD~pIP~Nn--d---------s~~ 173 (315)
...+.+-|++|++.-.-. ..+++.|+..|.+||+|++.. |++ ++.|+.|.... . +..
T Consensus 129 ~~~~l~~~~l~~~DvvI~IS~SG~T~~vi~al~~Ak~~Ga~~IaIT~~~~S~La~~AD~~I~~~~g~E~~~~st~~~s~t 208 (306)
T 1nri_A 129 VLNDLQSIHFSKNDVLVGIAASGRTPYVIAGLQYAKSLGALTISIASNPKSEMAEIADIAIETIVGPEILTGSSRLKSGT 208 (306)
T ss_dssp HHHHHHHTTCCTTSEEEEECTTSCCHHHHHHHHHHHHHTCEEEEEESSTTCHHHHHSSEEEECCCCSCSSTTCTTTHHHH
T ss_pred HHHHHHhcCCCCCCEEEEEECCCCCHHHHHHHHHHHHCCCEEEEEECCCCChHHHhCCEEEEcCCCCccccCcccchhHH
Confidence 013567788888874443 457788999999999998764 443 24677765542 1 122
Q ss_pred hHHHHHHHHHHHHHHhhcCCCCCCCccccccc
Q 021262 174 SIGCLFWLLARMVLQMRGTIRPGHKWDVMVDL 205 (315)
Q Consensus 174 SI~li~~lLaraVl~~rg~i~~~~~w~v~~dl 205 (315)
+..+++.+|...+....|..-. +.|.|+
T Consensus 209 a~~~vl~~L~~~~~~~~g~~~~----~~m~~~ 236 (306)
T 1nri_A 209 AQKMVLNMLTTASMILLGKCYE----NLMVDV 236 (306)
T ss_dssp HHHHHHHHHHHHHHHHTTSCBT----TBCTTC
T ss_pred HHHHHHHHHHHHHHHHccHHHH----HHHhhh
Confidence 4447788888888887775432 346665
No 15
>3etn_A Putative phosphosugar isomerase involved in capsu formation; YP_209877.1; HET: MSE CMK; 1.70A {Bacteroides fragilis nctc 9343}
Probab=94.61 E-value=0.36 Score=42.46 Aligned_cols=129 Identities=16% Similarity=0.191 Sum_probs=72.6
Q ss_pred HHHHHHHHHHH-h-hCCCcEEEEccCchhHHHHHHHHHH---hCCccccCCccCCccCccccccccCCceEEEeCCCCC-
Q 021262 61 KLQMAARVIVA-I-ENPGDIIVQSARPYGQRAVLKFAKY---THAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTD- 134 (315)
Q Consensus 61 kL~~Aa~~I~~-I-~n~~~IlfVstr~~~q~aV~kfA~~---tga~~i~grw~pGtLTN~~~~~f~eP~lLIV~DP~~d- 134 (315)
.|..+++.|.. . .+.++|.|++....+. +.+.|+.+ .|-.... ..++.+.......+.+=|++|++...-+
T Consensus 43 ~i~~~~~~i~~~a~~~a~~I~i~G~G~S~~-~A~~~~~~l~~lg~~~~~--~~~~~~~~~~~~~~~~~DlvI~iS~SG~t 119 (220)
T 3etn_A 43 AYEKAVELIVEQIHRKKGKLVTSGMGKAGQ-IAMNIATTFCSTGIPSVF--LHPSEAQHGDLGILQENDLLLLISNSGKT 119 (220)
T ss_dssp HHHHHHHHHHHHTTTTCCCEEEECSHHHHH-HHHHHHHHHHHTTCCEEE--CCTTGGGBTGGGGCCTTCEEEEECSSSCC
T ss_pred HHHHHHHHHHhHhhccCCEEEEEEecHHHH-HHHHHHHHHHhcCCcEEE--eCCHHHHHhhhccCCCCCEEEEEcCCCCC
Confidence 45566666665 2 4578899998765322 22333332 3322111 1122221111223456688888875444
Q ss_pred ---chhHHHhhh--cCCCceeeccC-CCCC-CcceEEecCCCC------------CcchHHHHHHHHHHHHHHhhcC
Q 021262 135 ---HQPIKEAAL--GNIPTIAFCDT-DSPM-RYVDIGIPANNK------------GKHSIGCLFWLLARMVLQMRGT 192 (315)
Q Consensus 135 ---~qaI~EAs~--lnIPtIAL~DT-ds~~-~~VD~pIP~Nnd------------s~~SI~li~~lLaraVl~~rg~ 192 (315)
..+++.|+. .|+++|+|++. +|++ ++.|+.|..... |.-+.-+++.+|+-.+...+|.
T Consensus 120 ~~~i~~~~~ak~~~~Ga~vI~IT~~~~s~La~~aD~~l~~~~~~e~~~~~~~~~~S~~~~l~lld~L~~~l~~~~g~ 196 (220)
T 3etn_A 120 REIVELTQLAHNLNPGLKFIVITGNPDSPLASESDVCLSTGHPAEVCTLGMTPTTSTTVMTVIGDILVVQTMKRTEF 196 (220)
T ss_dssp HHHHHHHHHHHHHCTTCEEEEEESCTTSHHHHHSSEEEECCCCCCCSTTSCSSSHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHhcCCCCeEEEEECCCCChhHHhCCEEEEcCCCcccccccccchHHHHHHHHHHHHHHHHHHHHhCC
Confidence 346788999 99999999976 4444 345665554322 1114456677777777777764
No 16
>2i2w_A Phosphoheptose isomerase; lipopolysaccharide biosynthesis; 1.95A {Escherichia coli} PDB: 2i22_A 1x94_A
Probab=94.55 E-value=0.22 Score=43.25 Aligned_cols=108 Identities=18% Similarity=0.160 Sum_probs=61.1
Q ss_pred HHHHHHHHHHHH-hhCCCcEEEEccCchhHHHHHHHH----HH-----hCCccccCCccCCccCc-------------cc
Q 021262 60 EKLQMAARVIVA-IENPGDIIVQSARPYGQRAVLKFA----KY-----THAHAIAGRHTPGTFTN-------------QM 116 (315)
Q Consensus 60 ekL~~Aa~~I~~-I~n~~~IlfVstr~~~q~aV~kfA----~~-----tga~~i~grw~pGtLTN-------------~~ 116 (315)
+.+..+++.+.. +.+.++|.|+++..... +-..++ .+ .|-..+.-. -++.+|- +.
T Consensus 48 ~~i~~~~~~i~~~l~~~~~I~i~G~G~S~~-~A~~~a~~l~~~~~~~~~g~~~~~~~-d~~~~~~~~~~~~~~~~~~~~~ 125 (212)
T 2i2w_A 48 HAIQRAAVLLADSFKAGGKVLSCGNGGSHC-DAMHFAEELTGRYRENRPGYPAIAIS-DVSHISCVGNDFGFNDIFSRYV 125 (212)
T ss_dssp HHHHHHHHHHHHHHHTTCCEEEEESTHHHH-HHHHHHHHHHHHHCTTSSSCSEEECC-CTTCGGGGSCCCSCSSHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCEEEEEeCCHHHH-HHHHHHHHHHhhhcccCCCCeEEecC-ChHHhhHhhccCCHHHHHHHHH
Confidence 345666666654 57888999998875432 222333 11 122111100 1222220 11
Q ss_pred cccccCCceEEEeCCCCC----chhHHHhhhcCCCceeeccCC-CCC-CcceEEecCCC
Q 021262 117 QTSFNEPRLLILTDPRTD----HQPIKEAALGNIPTIAFCDTD-SPM-RYVDIGIPANN 169 (315)
Q Consensus 117 ~~~f~eP~lLIV~DP~~d----~qaI~EAs~lnIPtIAL~DTd-s~~-~~VD~pIP~Nn 169 (315)
...+.+-|++|++...-+ ..++++|+..|++||+|++.. +++ ++.|+.|....
T Consensus 126 ~~~~~~~DvvI~iS~SG~t~~~i~~~~~ak~~G~~vIaIT~~~~s~La~~aD~~l~~~~ 184 (212)
T 2i2w_A 126 EAVGREGDVLLGISTSGNSANVIKAIAAAREKGMKVITLTGKDGGKMAGTADIEIRVPH 184 (212)
T ss_dssp HHHCCTTCEEEEECSSSCCHHHHHHHHHHHHHTCEEEEEEETTCGGGTTCSSEEEEECC
T ss_pred HhcCCCCCEEEEEECCCCCHHHHHHHHHHHHCCCeEEEEECCCCCchHHhCCEEEEcCC
Confidence 122466788888875544 457789999999999999864 554 34566655543
No 17
>3trj_A Phosphoheptose isomerase; lipopolysaccharide biosynthesis; 2.80A {Francisella tularensis subsp}
Probab=94.03 E-value=0.46 Score=41.30 Aligned_cols=111 Identities=21% Similarity=0.275 Sum_probs=63.2
Q ss_pred HHHHHHHHHHH-hhCCCcEEEEccCchhHHHHHHHHHHhCCccccC------CccCC----------------ccCcccc
Q 021262 61 KLQMAARVIVA-IENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAG------RHTPG----------------TFTNQMQ 117 (315)
Q Consensus 61 kL~~Aa~~I~~-I~n~~~IlfVstr~~~q~aV~kfA~~tga~~i~g------rw~pG----------------tLTN~~~ 117 (315)
.|.+|++.|.. +.+.++|.++|....+. .-..|+.+....|... ..++| .|..+..
T Consensus 31 ~i~~a~~~i~~al~~~~~I~i~G~G~S~~-~A~~~~~~l~~~~~~~r~g~~~~~~~~d~~~~~a~~~d~~~~~~~~~~l~ 109 (201)
T 3trj_A 31 AIAQAAKAMVSCLENGGKVLVCGNGSSGV-IAQHFTSKLLNHFEMERPPLPAIALTGDVATITAVGNHYGFSQIFAKQVA 109 (201)
T ss_dssp HHHHHHHHHHHHHHTTCCEEEEESTHHHH-HHHHHHHHHHC-------CCCEEETTSCHHHHHHHHHHTCGGGTTHHHHH
T ss_pred HHHHHHHHHHHHHHCCCEEEEEeCcHhHH-HHHHHHHHhcCccCCCCCCCceEEccCChHHHHHhccCCCHHHHHHHHHH
Confidence 46677777775 58899999999876443 2233443332111111 11111 0111111
Q ss_pred ccccCCceEEEeCCCCC----chhHHHhhhcCCCceeeccC-CCCCC-cc---eEEecCCCCCc
Q 021262 118 TSFNEPRLLILTDPRTD----HQPIKEAALGNIPTIAFCDT-DSPMR-YV---DIGIPANNKGK 172 (315)
Q Consensus 118 ~~f~eP~lLIV~DP~~d----~qaI~EAs~lnIPtIAL~DT-ds~~~-~V---D~pIP~Nnds~ 172 (315)
...++=|++|++...-+ ..+++.|+..|++||+|++. ++++. +. |+.|....+..
T Consensus 110 ~~~~~~Dvvi~iS~SG~t~~~~~~~~~ak~~g~~vi~iT~~~~s~la~~a~~~d~~l~~~~~~~ 173 (201)
T 3trj_A 110 ALGNEDDILLVITTSGDSENILSAVEEAHDLEMKVIALTGGSGGALQNMYNTDDIELRVPSDNI 173 (201)
T ss_dssp HHCCTTCEEEEECSSSCCHHHHHHHHHHHHTTCEEEEEEETTCCGGGGTCCTTCEEEEESCCCH
T ss_pred hhCCCCCEEEEEeCCCCCHHHHHHHHHHHHCCCcEEEEECCCCCHHHHhhccCCEEEEeCCCCc
Confidence 12466788888875444 35778999999999999975 55543 34 66655554444
No 18
>3fxa_A SIS domain protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 1.60A {Listeria monocytogenes str}
Probab=93.73 E-value=0.16 Score=43.53 Aligned_cols=73 Identities=14% Similarity=0.150 Sum_probs=45.5
Q ss_pred ccCCceEEEeCCCCC----chhHHHhhhcCCCceeeccC-CCCC-CcceEEe--cCCCC----------CcchHHHHHHH
Q 021262 120 FNEPRLLILTDPRTD----HQPIKEAALGNIPTIAFCDT-DSPM-RYVDIGI--PANNK----------GKHSIGCLFWL 181 (315)
Q Consensus 120 f~eP~lLIV~DP~~d----~qaI~EAs~lnIPtIAL~DT-ds~~-~~VD~pI--P~Nnd----------s~~SI~li~~l 181 (315)
..+=|++|++...-+ ..+++.|...|+++|+|++. +|++ ++.|+.| |+... |..+.-+++.+
T Consensus 90 ~~~~dvvI~iS~sG~t~~~~~~~~~ak~~g~~vi~IT~~~~s~l~~~ad~~l~~~~~~e~~~~~~~~~~s~~~~l~~~d~ 169 (201)
T 3fxa_A 90 LQKEDILILISKGGNTGELLNLIPACKTKGSTLIGVTENPDSVIAKEADIFFPVSVSKEPDPFNMLATASTMAVIASFDA 169 (201)
T ss_dssp CCTTCEEEEECSSSCCHHHHTTHHHHHHHTCEEEEEESCTTSHHHHHCSEEEECCCSCCCSTTSCSCHHHHHHHHHHHHH
T ss_pred CCCCCEEEEEeCCCCCHHHHHHHHHHHHcCCeEEEEECCCCChhHHhCCEEEEcCCCccccccCCCchHHHHHHHHHHHH
Confidence 455688888875444 35678899999999999986 4443 2455555 44322 12234445566
Q ss_pred HHHHHHHhhcC
Q 021262 182 LARMVLQMRGT 192 (315)
Q Consensus 182 LaraVl~~rg~ 192 (315)
|...+...+|.
T Consensus 170 L~~~l~~~~g~ 180 (201)
T 3fxa_A 170 VIVCLMTYMNY 180 (201)
T ss_dssp HHHHHHHHTTC
T ss_pred HHHHHHHhcCC
Confidence 66666666553
No 19
>1x92_A APC5045, phosphoheptose isomerase; midwest centre for structural genomics, SIS domain, A/B protein, lipopolysaccharide biosynthesis, PSI; HET: M7P; 2.30A {Pseudomonas aeruginosa} SCOP: c.80.1.3 PDB: 3bjz_A
Probab=93.70 E-value=0.64 Score=39.44 Aligned_cols=117 Identities=17% Similarity=0.177 Sum_probs=65.8
Q ss_pred CHHHHHHH----HHHHHHHHHH-hhCCCcEEEEccCchhHHHHHHHHHHh-CCcc-----ccCCccCCc---cC------
Q 021262 54 NLGKTWEK----LQMAARVIVA-IENPGDIIVQSARPYGQRAVLKFAKYT-HAHA-----IAGRHTPGT---FT------ 113 (315)
Q Consensus 54 NL~kT~ek----L~~Aa~~I~~-I~n~~~IlfVstr~~~q~aV~kfA~~t-ga~~-----i~grw~pGt---LT------ 113 (315)
+|.+|.+. |..+++.|.. +.+.++|.|++.+..+. +...|+.+. +.+. +.-....+. +|
T Consensus 19 ~l~~t~~~l~~~i~~~~~~i~~~i~~a~~I~i~G~G~S~~-~A~~~~~~l~~~~~~~~~g~~~~~~~~~~~~~~~~~~d~ 97 (199)
T 1x92_A 19 TKQQALEVLPPYIEQASLVMVNALLNEGKILSCGNGGSAG-DAQHFSSELLNRFERERPSLPAVALTTDSSTITSIANDY 97 (199)
T ss_dssp HHHHHHHHSHHHHHHHHHHHHHHHHTTCCEEEECSTHHHH-HHHHHHHHHHTCSSSCCCCCCEEETTCCHHHHHHHHHHT
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHCCCEEEEEcCchhHH-HHHHHHHHHhcCcccCCCCCceEecCCChhHHHHhhcCc
Confidence 45555544 4456666554 57788999999886442 344455444 2110 000011110 00
Q ss_pred c-------cccccccCCceEEEeCCCCC----chhHHHhhhcCCCceeeccCC-CCCC-c---ceEEecCCCCC
Q 021262 114 N-------QMQTSFNEPRLLILTDPRTD----HQPIKEAALGNIPTIAFCDTD-SPMR-Y---VDIGIPANNKG 171 (315)
Q Consensus 114 N-------~~~~~f~eP~lLIV~DP~~d----~qaI~EAs~lnIPtIAL~DTd-s~~~-~---VD~pIP~Nnds 171 (315)
+ +......+=|++|++...-+ ..+++.|+..|++||+|++.. +++. + .|+.|......
T Consensus 98 ~~~~~~~~~~~~~~~~~DvvI~iS~SG~t~~~i~~~~~ak~~g~~vI~IT~~~~s~La~~~~~ad~~l~~~~~~ 171 (199)
T 1x92_A 98 SYNEVFSKQIRALGQPGDVLLAISTSGNSANVIQAIQAAHDREMLVVALTGRDGGGMASLLLPEDVEIRVPSKI 171 (199)
T ss_dssp CGGGTTHHHHHHHCCTTCEEEEECSSSCCHHHHHHHHHHHHTTCEEEEEECTTCHHHHHHCCTTCEEEECSCSC
T ss_pred cHHHHHHHHHHhCCCCCCEEEEEeCCCCCHHHHHHHHHHHHCCCEEEEEECCCCCcHHhccccCCEEEEeCCCc
Confidence 0 00123466788888875444 447788999999999999864 4432 3 67777665544
No 20
>1jeo_A MJ1247, hypothetical protein MJ1247; RUMP pathway, phosphosugar, 3-hexulose-6-phosphate isomerase structural genomics; HET: CME CIT; 2.00A {Methanocaldococcus jannaschii} SCOP: c.80.1.3
Probab=93.60 E-value=0.37 Score=40.25 Aligned_cols=113 Identities=17% Similarity=0.093 Sum_probs=61.9
Q ss_pred hhCCCcEEEEccCchhHHHHHHHHHH---hCCccccCCccCCccCccccccccCCceEEEeCCCCC----chhHHHhhhc
Q 021262 72 IENPGDIIVQSARPYGQRAVLKFAKY---THAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTD----HQPIKEAALG 144 (315)
Q Consensus 72 I~n~~~IlfVstr~~~q~aV~kfA~~---tga~~i~grw~pGtLTN~~~~~f~eP~lLIV~DP~~d----~qaI~EAs~l 144 (315)
+.+.++|.|+|...... +...|+.+ .|-... ..+.. ....+.+-|++|++....+ ..++++|+..
T Consensus 37 i~~a~~I~i~G~G~S~~-~A~~~~~~l~~~g~~~~---~~~~~----~~~~~~~~d~vi~iS~sG~t~~~~~~~~~ak~~ 108 (180)
T 1jeo_A 37 IIKAKKIFIFGVGRSGY-IGRCFAMRLMHLGFKSY---FVGET----TTPSYEKDDLLILISGSGRTESVLTVAKKAKNI 108 (180)
T ss_dssp HHHCSSEEEECCHHHHH-HHHHHHHHHHHTTCCEE---ETTST----TCCCCCTTCEEEEEESSSCCHHHHHHHHHHHTT
T ss_pred HHhCCEEEEEeecHHHH-HHHHHHHHHHHcCCeEE---EeCCC----ccccCCCCCEEEEEeCCCCcHHHHHHHHHHHHC
Confidence 34456899998874322 23333333 333211 12211 1223455677777764443 3467889999
Q ss_pred CCCceeeccCCCCC-CcceEEe--cCCCCC---cc-----hHHHHHHHHHHHHHHhhcC
Q 021262 145 NIPTIAFCDTDSPM-RYVDIGI--PANNKG---KH-----SIGCLFWLLARMVLQMRGT 192 (315)
Q Consensus 145 nIPtIAL~DTds~~-~~VD~pI--P~Nnds---~~-----SI~li~~lLaraVl~~rg~ 192 (315)
|+++|+|++...++ ++.|+.| |++.++ .. +.-+++.+|...+...+|.
T Consensus 109 g~~vi~IT~~~~sl~~~ad~~l~~~~~~~~~~~~~s~~~~~~~~~ld~L~~~~~~~~~~ 167 (180)
T 1jeo_A 109 NNNIIAIVCECGNVVEFADLTIPLEVKKSKYLPMGTTFEETALIFLDLVIAEIMKRLNL 167 (180)
T ss_dssp CSCEEEEESSCCGGGGGCSEEEECCCCCBTTBCTTHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred CCcEEEEeCCCChHHHhCCEEEEeCCcccccccchhHHHHHHHHHHHHHHHHHHHHcCC
Confidence 99999999864323 2355554 443221 22 2346677777777766553
No 21
>3sho_A Transcriptional regulator, RPIR family; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 1.80A {Sphaerobacter thermophilus}
Probab=93.16 E-value=0.19 Score=42.14 Aligned_cols=69 Identities=22% Similarity=0.210 Sum_probs=42.9
Q ss_pred ccCCceEEEeCCCCC----chhHHHhhhcCCCceeeccC-CCCC-CcceEEecCCCC------CcchHHHHHHHHHHHHH
Q 021262 120 FNEPRLLILTDPRTD----HQPIKEAALGNIPTIAFCDT-DSPM-RYVDIGIPANNK------GKHSIGCLFWLLARMVL 187 (315)
Q Consensus 120 f~eP~lLIV~DP~~d----~qaI~EAs~lnIPtIAL~DT-ds~~-~~VD~pIP~Nnd------s~~SI~li~~lLaraVl 187 (315)
+.+=|++|++...-+ ..+++.|+..|+++|+|.|. ++++ ++.|+.|....+ |.-+.-+++.+|...+.
T Consensus 85 ~~~~d~~i~iS~sG~t~~~~~~~~~ak~~g~~vi~IT~~~~s~l~~~ad~~l~~~~~~~~~~~S~~~~~~l~d~L~~~~~ 164 (187)
T 3sho_A 85 LRPTDLMIGVSVWRYLRDTVAALAGAAERGVPTMALTDSSVSPPARIADHVLVAATRGVGHSLSPVGLIAVVNLLLAEIA 164 (187)
T ss_dssp CCTTEEEEEECCSSCCHHHHHHHHHHHHTTCCEEEEESCTTSHHHHHCSEEEECCCCCSSSSCCCHHHHHHHHHHHHHHH
T ss_pred CCCCCEEEEEeCCCCCHHHHHHHHHHHHCCCCEEEEeCCCCCcchhhCcEEEEecCCCCcccccHhHHHHHHHHHHHHHH
Confidence 456688888875444 34668889999999999986 4444 345665554332 33344445555555444
Q ss_pred H
Q 021262 188 Q 188 (315)
Q Consensus 188 ~ 188 (315)
.
T Consensus 165 ~ 165 (187)
T 3sho_A 165 V 165 (187)
T ss_dssp H
T ss_pred H
Confidence 3
No 22
>2xbl_A Phosphoheptose isomerase; capsule; HET: M7P PGE PG4; 1.62A {Burkholderia pseudomallei} PDB: 2x3y_A
Probab=93.14 E-value=2 Score=35.99 Aligned_cols=110 Identities=16% Similarity=0.181 Sum_probs=61.2
Q ss_pred HHHHHHHHHHHH-hhCCCcEEEEccCchhHHHHHHHHHHhCCcc------ccCCccCC-c--cC-------------ccc
Q 021262 60 EKLQMAARVIVA-IENPGDIIVQSARPYGQRAVLKFAKYTHAHA------IAGRHTPG-T--FT-------------NQM 116 (315)
Q Consensus 60 ekL~~Aa~~I~~-I~n~~~IlfVstr~~~q~aV~kfA~~tga~~------i~grw~pG-t--LT-------------N~~ 116 (315)
+.+..+++.|.. +.+.++|.|+|....+. +...++......+ +.-....+ . +| .+.
T Consensus 32 ~~i~~~~~~i~~~i~~~~~I~i~G~G~S~~-~A~~~~~~l~~~~~~~~~g~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~ 110 (198)
T 2xbl_A 32 ATVRKVADACIASIAQGGKVLLAGNGGSAA-DAQHIAGEFVSRFAFDRPGLPAVALTTDTSILTAIGNDYGYEKLFSRQV 110 (198)
T ss_dssp HHHHHHHHHHHHHHHTTCCEEEECSTHHHH-HHHHHHHHHHSCSSSCCCCCCEEETTCCHHHHHHHHHHHCGGGTTHHHH
T ss_pred HHHHHHHHHHHHHHHcCCEEEEEeCcHhhH-HHHHHHHHHHhhhccCCCCCceEEecCChHHHHHhhccCCHHHHHHHHH
Confidence 456777777765 47778999999885433 3334443221100 00011211 0 00 001
Q ss_pred cccccCCceEEEeCCCCC----chhHHHhhhcCCCceeeccC-CCCC-CcceEEecCCCC
Q 021262 117 QTSFNEPRLLILTDPRTD----HQPIKEAALGNIPTIAFCDT-DSPM-RYVDIGIPANNK 170 (315)
Q Consensus 117 ~~~f~eP~lLIV~DP~~d----~qaI~EAs~lnIPtIAL~DT-ds~~-~~VD~pIP~Nnd 170 (315)
.....+=|++|++...-+ ..+++.|+..|++||+|++. ++++ ++.|+.|.....
T Consensus 111 ~~~~~~~d~vI~iS~SG~t~~~~~~~~~ak~~g~~vI~IT~~~~s~L~~~ad~~l~~~~~ 170 (198)
T 2xbl_A 111 QALGNEGDVLIGYSTSGKSPNILAAFREAKAKGMTCVGFTGNRGGEMRELCDLLLEVPSA 170 (198)
T ss_dssp HHHCCTTCEEEEECSSSCCHHHHHHHHHHHHTTCEEEEEECSCCCTHHHHCSEEEECSCS
T ss_pred HhhCCCCCEEEEEeCCCCCHHHHHHHHHHHHCCCeEEEEECCCCCcHHHhCCEEEEeCCC
Confidence 112456688888875444 44778889999999999985 4554 345555544433
No 23
>2xhz_A KDSD, YRBH, arabinose 5-phosphate isomerase; lipopolysaccharide biogenesis; 2.60A {Escherichia coli}
Probab=92.73 E-value=0.32 Score=40.66 Aligned_cols=91 Identities=15% Similarity=0.143 Sum_probs=48.5
Q ss_pred CcEEEEccCchhHHHHHHHHHHhCCccccCCccC-CccCccccccccCCceEEEeCCCCC----chhHHHhhhcCCCcee
Q 021262 76 GDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTP-GTFTNQMQTSFNEPRLLILTDPRTD----HQPIKEAALGNIPTIA 150 (315)
Q Consensus 76 ~~IlfVstr~~~q~aV~kfA~~tga~~i~grw~p-GtLTN~~~~~f~eP~lLIV~DP~~d----~qaI~EAs~lnIPtIA 150 (315)
++|.|++....+. +...|+.+....-..-..+. +.+....-..+.+-|++|++.-.-+ ..+++.|+..|+++|+
T Consensus 50 ~~I~i~G~G~S~~-~a~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~d~vI~iS~sG~t~~~~~~~~~ak~~g~~vi~ 128 (183)
T 2xhz_A 50 GKVVVMGMGASGH-IGRKMAATFASTGTPSFFVHPGEAAHGDLGMVTPQDVVIAISNSGESSEITALIPVLKRLHVPLIC 128 (183)
T ss_dssp SCEEEEECHHHHH-HHHHHHHHHHTTTCCEEECCTTHHHHHTSTTCCTTCEEEEECSSSCCHHHHHHHHHHHTTTCCEEE
T ss_pred CeEEEEeecHHHH-HHHHHHHHHHhcCceEEEeCchHHhhhhhccCCCCCEEEEEeCCCCCHHHHHHHHHHHHCCCCEEE
Confidence 5899998875432 33444444321100001111 1110000112456688888875444 3467788999999999
Q ss_pred eccCC-CCC-CcceEEecC
Q 021262 151 FCDTD-SPM-RYVDIGIPA 167 (315)
Q Consensus 151 L~DTd-s~~-~~VD~pIP~ 167 (315)
|++.. +++ ++.|+.|..
T Consensus 129 IT~~~~s~la~~ad~~l~~ 147 (183)
T 2xhz_A 129 ITGRPESSMARAADVHLCV 147 (183)
T ss_dssp EESCTTSHHHHHSSEEEEC
T ss_pred EECCCCChhHHhCCEEEEe
Confidence 99864 444 245665544
No 24
>2a3n_A Putative glucosamine-fructose-6-phosphate aminotr; structural genomics, joint center for structural genomics; HET: MSE; 1.23A {Salmonella typhimurium}
Probab=92.47 E-value=0.23 Score=46.89 Aligned_cols=137 Identities=18% Similarity=0.120 Sum_probs=71.9
Q ss_pred ccCHHHHHHHHHHHHHHHHHhhC--CCcEEEEccCchhH--HHHHHHHHH-hCCccccCCccCCccCccccccccCCceE
Q 021262 52 IINLGKTWEKLQMAARVIVAIEN--PGDIIVQSARPYGQ--RAVLKFAKY-THAHAIAGRHTPGTFTNQMQTSFNEPRLL 126 (315)
Q Consensus 52 IINL~kT~ekL~~Aa~~I~~I~n--~~~IlfVstr~~~q--~aV~kfA~~-tga~~i~grw~pGtLTN~~~~~f~eP~lL 126 (315)
+=+|++|+......-+++..|.+ ..+|.|+++..... .....+..+ .|..... ..++-|.......+.+-+++
T Consensus 29 ~~~i~~t~~~~~~i~~~~~~i~~~~~~~I~i~G~G~S~~~a~~~~~~l~~~~g~~~~~--~~~~e~~~~~~~~l~~~dlv 106 (355)
T 2a3n_A 29 LTSAREIIAARQKAEQVADEIYQAGFSSLFFASVGGSLAPMMAINEFAKELTTLPVYV--EQAAELIHKGNKRLNKDSVV 106 (355)
T ss_dssp HHHHHHHHTTHHHHHHHHHHHHHHCCSCEEEEECGGGHHHHHHHHHHHHHHCCSCEEE--EEHHHHHHHCCTTCCTTCEE
T ss_pred HHHHHHHHhhHHHHHHHHHHHHhCCCCEEEEEEccHHHHHHHHHHHHHHhhcCCeEEE--cCcHHHHhhchhcCCCCCEE
Confidence 34566666522222233333433 67899987764322 112222333 4432211 11111111111123577888
Q ss_pred EEeCCCCC----chhHHHhhhcCCCceeeccCC-CCC-CcceEEecCC--CCCcchHHHHHHHHHHHHHHhhc
Q 021262 127 ILTDPRTD----HQPIKEAALGNIPTIAFCDTD-SPM-RYVDIGIPAN--NKGKHSIGCLFWLLARMVLQMRG 191 (315)
Q Consensus 127 IV~DP~~d----~qaI~EAs~lnIPtIAL~DTd-s~~-~~VD~pIP~N--nds~~SI~li~~lLaraVl~~rg 191 (315)
|++...-+ ..+++.|+..|.+||+|++.. |++ +..|+.|... .++ .+-.+++.+|+-.++..+|
T Consensus 107 I~iS~SG~t~e~~~a~~~ak~~Ga~vi~IT~~~~S~La~~ad~~l~~~~~~~~-~~~~~~~~ll~~~l~~~~~ 178 (355)
T 2a3n_A 107 ITLSKSGDTKESVAIAEWCKAQGIRVVAITKNADSPLAQAATWHIPMRHKNGV-EYEYMLLYWLFFRVLSRNN 178 (355)
T ss_dssp EEECSSSCCHHHHHHHHHHHHTTCEEEEEESCTTSHHHHTCSEEEECCCSSCH-HHHHHHHHHHHHHHHHHTT
T ss_pred EEEeCCCCCHHHHHHHHHHHHCCCeEEEEECCCCChhhHhCCEEEEeCCCcch-hHHHHHHHHHHHHHHHHcC
Confidence 88886555 457889999999999999864 444 2455555444 433 2333445556666777666
No 25
>1tk9_A Phosphoheptose isomerase 1; lipopolysaccharide biosynthesis, structural genomics, NYSGXRC, LPC1_camje, PSI, protein structure initiative; 2.10A {Campylobacter jejuni} SCOP: c.80.1.3
Probab=91.74 E-value=1.6 Score=36.40 Aligned_cols=110 Identities=13% Similarity=0.152 Sum_probs=62.4
Q ss_pred HHHHHHHHHHHH-hhCCCcEEEEccCchhHHHHHHHHHHhCCcc-cc--C---CccCC---ccC-------------ccc
Q 021262 60 EKLQMAARVIVA-IENPGDIIVQSARPYGQRAVLKFAKYTHAHA-IA--G---RHTPG---TFT-------------NQM 116 (315)
Q Consensus 60 ekL~~Aa~~I~~-I~n~~~IlfVstr~~~q~aV~kfA~~tga~~-i~--g---rw~pG---tLT-------------N~~ 116 (315)
+.+.++++.|.. +.+.++|.|++....+ .+...++......| .. | ...++ .+| .+.
T Consensus 26 ~~i~~~~~~i~~~l~~~~~I~i~G~G~S~-~~a~~~~~~l~~~~~~~~~g~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~ 104 (188)
T 1tk9_A 26 GQIAKVGELLCECLKKGGKILICGNGGSA-ADAQHFAAELSGRYKKERKALAGIALTTDTSALSAIGNDYGFEFVFSRQV 104 (188)
T ss_dssp HHHHHHHHHHHHHHHTTCCEEEEESTHHH-HHHHHHHHHHHSCSSSCCCCCCEEESSCCHHHHHHHHHHTCGGGHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCEEEEEeCcHhH-HHHHHHHHHHhhhhccCCCCCceEeccCCchhHhhhhcCCCHHHHHHHHH
Confidence 567778887775 5788899999988544 23344554321111 00 0 11111 011 001
Q ss_pred cccccCCceEEEeCCCCC----chhHHHhhhcCCCceeeccC-CCCCC-cceEEecCCCC
Q 021262 117 QTSFNEPRLLILTDPRTD----HQPIKEAALGNIPTIAFCDT-DSPMR-YVDIGIPANNK 170 (315)
Q Consensus 117 ~~~f~eP~lLIV~DP~~d----~qaI~EAs~lnIPtIAL~DT-ds~~~-~VD~pIP~Nnd 170 (315)
.....+=|++|++...-+ ..+++.|+..|++||+|++. ++++. +.|+.|.....
T Consensus 105 ~~~~~~~Dvvi~iS~sG~t~~~~~~~~~ak~~g~~vi~iT~~~~s~L~~~ad~~l~~~~~ 164 (188)
T 1tk9_A 105 EALGNEKDVLIGISTSGKSPNVLEALKKAKELNMLCLGLSGKGGGMMNKLCDHNLVVPSD 164 (188)
T ss_dssp HHHCCTTCEEEEECSSSCCHHHHHHHHHHHHTTCEEEEEEEGGGTTHHHHCSEEEEESCS
T ss_pred HHhCCCCCEEEEEeCCCCCHHHHHHHHHHHHCCCEEEEEeCCCCcchHHcCCEEEEeCCC
Confidence 112456688888875444 34678889999999999985 45543 35665554433
No 26
>2aml_A SIS domain protein; 46906266, LMO0035 protein, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=91.58 E-value=0.57 Score=44.54 Aligned_cols=75 Identities=12% Similarity=0.107 Sum_probs=49.0
Q ss_pred ccCCceEEEeCCCCC----chhHHHhhhc-CCCceeeccC-CCCCC-cceEEecCCC--C-C------cchHHHHHHHHH
Q 021262 120 FNEPRLLILTDPRTD----HQPIKEAALG-NIPTIAFCDT-DSPMR-YVDIGIPANN--K-G------KHSIGCLFWLLA 183 (315)
Q Consensus 120 f~eP~lLIV~DP~~d----~qaI~EAs~l-nIPtIAL~DT-ds~~~-~VD~pIP~Nn--d-s------~~SI~li~~lLa 183 (315)
..+-+++|++...-+ ..+++.|+.. |.++|+|+|. +|++. ..|+.|.... . + ..|--+.+.+|+
T Consensus 95 ~~~~dlvI~iS~SG~T~e~l~a~~~ak~~~Ga~vIaIT~~~~S~La~~ad~~l~~~~~~E~~~~~t~s~ts~~~~l~ll~ 174 (373)
T 2aml_A 95 SSHLDLVIGISQSGQSTSTISALERVKKEASVPVVALTSDVTSEIAEFADITLDIGSGKERVGYVTKGFTATVLTLMLTG 174 (373)
T ss_dssp CTTCCEEEEECSSSCBHHHHHHHHHHHHHCCCCEEEEESCTTSGGGGGCSEEEECSCCCCCSSSCSHHHHHHHHHHHHHH
T ss_pred CCCCCEEEEEcCCCCCHHHHHHHHHHHHhCCCcEEEEECCCCChHHHhcCcceecCCCccccccccccHHHHHHHHHHHH
Confidence 456788888886555 4578889998 9999999986 45553 3566655432 1 1 123334455666
Q ss_pred HHHHHhhcCCC
Q 021262 184 RMVLQMRGTIR 194 (315)
Q Consensus 184 raVl~~rg~i~ 194 (315)
..+.+.+|.++
T Consensus 175 ~~l~~~~g~~~ 185 (373)
T 2aml_A 175 LHFAYKTVQID 185 (373)
T ss_dssp HHHHHHTTSSC
T ss_pred HHHHHHhCCCC
Confidence 66777777654
No 27
>3knz_A Putative sugar binding protein; structural genomics, joint C structural genomics, JCSG, protein structure initiative; 2.50A {Salmonella enterica subsp}
Probab=90.77 E-value=1.2 Score=42.52 Aligned_cols=121 Identities=12% Similarity=0.035 Sum_probs=70.2
Q ss_pred hhCCCcEEEEccCchh--HHHHHHHH-HHhCCccccCCccCCccCccccccccCCceEEEeCCCCC----chhHHHhhhc
Q 021262 72 IENPGDIIVQSARPYG--QRAVLKFA-KYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTD----HQPIKEAALG 144 (315)
Q Consensus 72 I~n~~~IlfVstr~~~--q~aV~kfA-~~tga~~i~grw~pGtLTN~~~~~f~eP~lLIV~DP~~d----~qaI~EAs~l 144 (315)
+.+..+|.|++..... ......+. +..|..... ..++.|... ...+.+.+++|++...-+ ..+++.|+..
T Consensus 47 ~~~a~~I~i~G~GtS~~aa~~~~~~~~~~~g~~~~~--~~~se~~~~-~~~~~~~dlvI~iS~SGeT~e~l~a~~~ak~~ 123 (366)
T 3knz_A 47 ERGVTRIILTGSGTSYHGALTARTFMQRWCALPVDV--CWPFMLDDE-TLARSGKALVVGISQGGGSLSTLAAMERARNV 123 (366)
T ss_dssp HTTCCEEEEECCHHHHHHHHHHHHHHHHHHTSCEEE--ECGGGCCHH-HHHHSCSEEEEEEESSSCCHHHHHHHHHHHHT
T ss_pred hcCCCEEEEEEechHHHHHHHHHHHHHHHHCCCeEE--EcchHHHhh-ccCCCCCCEEEEEcCCCCCHHHHHHHHHHHHc
Confidence 4677889999776431 11222222 224433211 223333221 122467788887765444 4588999999
Q ss_pred CCCceeeccC-CCCCC-cceEEecCCCC---------CcchHHHHHHHHHHHHHHhhcCCCC
Q 021262 145 NIPTIAFCDT-DSPMR-YVDIGIPANNK---------GKHSIGCLFWLLARMVLQMRGTIRP 195 (315)
Q Consensus 145 nIPtIAL~DT-ds~~~-~VD~pIP~Nnd---------s~~SI~li~~lLaraVl~~rg~i~~ 195 (315)
|++||+|++. +|++. ..|+.|+.+.. |..+--+++.+|+-.+.+.+|.++.
T Consensus 124 Ga~~IaIT~~~~S~La~~aD~~l~~~~g~E~~~a~tks~tsql~~l~lLa~~l~~~~g~~~~ 185 (366)
T 3knz_A 124 GHITASMAGVAPATIDRAADYILTVPCGEETAGAKTKGYHCTVLNLMLLALAVAGQQQRLDG 185 (366)
T ss_dssp TCEEEEEESSSSCGGGGGCSEECCCCCCC------CTHHHHHHHHHHHHHHHHHHHTTCSCH
T ss_pred CCCEEEEECCCCChhhhhcCEEEecCCCccccccccHHHHHHHHHHHHHHHHHHHHhCCCCH
Confidence 9999999975 66663 56777765422 1222223556677777777887653
No 28
>3cvj_A Putative phosphoheptose isomerase; rossman fold, 3-layer (ABA) sandwich, structural genomics, J center for structural genomics, JCSG; HET: MSE; 2.00A {Bacillus halodurans c-125}
Probab=89.71 E-value=0.86 Score=40.22 Aligned_cols=94 Identities=10% Similarity=0.075 Sum_probs=54.7
Q ss_pred HHHHHHHHHHHH-hhCCCcEEEEccCchhHHHHHHHHHHhCCcc-ccCCccCCccCcc-------------------ccc
Q 021262 60 EKLQMAARVIVA-IENPGDIIVQSARPYGQRAVLKFAKYTHAHA-IAGRHTPGTFTNQ-------------------MQT 118 (315)
Q Consensus 60 ekL~~Aa~~I~~-I~n~~~IlfVstr~~~q~aV~kfA~~tga~~-i~grw~pGtLTN~-------------------~~~ 118 (315)
+.|.++++.|.. +.+.++|.|++...... +...|+.+.+... +.-...++.+.+. ...
T Consensus 26 ~~i~~a~~~l~~~i~~~~~I~i~G~G~S~~-~A~~~~~~l~~l~~~~~~~~~~~~l~~~~~~~~~~e~~~g~~~~~~~~~ 104 (243)
T 3cvj_A 26 QAIIKGAHLVSEAVMNGGRFYVFGSGHSHM-IAEEIYNRAGGLALVTAILPPELMLHERPNKSTYLERIEGLSKSYLKLH 104 (243)
T ss_dssp HHHHHHHHHHHHHHHTTCCEEEEESGGGHH-HHHHTSSSTTCBTTEEECCCGGGSSSSSTTHHHHHTTCTTHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHCCCEEEEEcCcHHHH-HHHHHHHHhccccccCcccchhhhccCCchhhhhhhhcccHHHHHHHHh
Confidence 567788888875 68888999998875433 2233332222110 0000112211110 012
Q ss_pred cccCCceEEEeCCCCC----chhHHHhhhcCCCceeeccC
Q 021262 119 SFNEPRLLILTDPRTD----HQPIKEAALGNIPTIAFCDT 154 (315)
Q Consensus 119 ~f~eP~lLIV~DP~~d----~qaI~EAs~lnIPtIAL~DT 154 (315)
.+.+=|++|++...-+ ..+++.|+..|++||+|++.
T Consensus 105 ~~~~~Dv~I~iS~SG~t~~~i~~~~~Ak~~G~~vI~IT~~ 144 (243)
T 3cvj_A 105 QVTNKDVIMIISNSGRNTVPVEMAIESRNIGAKVIAMTSM 144 (243)
T ss_dssp TCCTTCEEEEECSSCCSHHHHHHHHHHHHHTCEEEEEECH
T ss_pred cCCCCCEEEEEeCCCCCHHHHHHHHHHHHCCCEEEEEeCC
Confidence 2456688888875444 44778899999999999886
No 29
>3g68_A Putative phosphosugar isomerase; SIS domain, double-SIS DOMA protein, structural genomics, joint center for structural G JCSG; HET: MSE CIT; 1.80A {Clostridium difficile}
Probab=88.01 E-value=2.2 Score=40.30 Aligned_cols=119 Identities=15% Similarity=0.121 Sum_probs=69.3
Q ss_pred hCCCcEEEEccCchh---HHHHHHHHHHhCCccccCCccCCccCcccccccc-CCceEEEeCCCCC----chhHHHhhhc
Q 021262 73 ENPGDIIVQSARPYG---QRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFN-EPRLLILTDPRTD----HQPIKEAALG 144 (315)
Q Consensus 73 ~n~~~IlfVstr~~~---q~aV~kfA~~tga~~i~grw~pGtLTN~~~~~f~-eP~lLIV~DP~~d----~qaI~EAs~l 144 (315)
.+..+|.|++..... +.+-..|.+.+|..... ..++.|.. ....+. +.+++|++...-+ ..+++.|+..
T Consensus 32 ~~~~~I~i~G~G~S~~~a~~~~~~l~~~~g~~~~~--~~~se~~~-~~~~~~~~~dlvI~iS~SG~T~e~l~a~~~ak~~ 108 (352)
T 3g68_A 32 TNLKKIIITGSGTSYHSGVQVQPYLQNLLDIDVVK--MYPFMITE-DTFKFDNENTLVVGVSQGGSSYSTYNAMKLAEDK 108 (352)
T ss_dssp SCCSEEEEECSHHHHHHHHHHHHHHHHHCSSEEEE--ECGGGCCG-GGGSSCCTTEEEEEEESSSCCHHHHHHHHHHHHT
T ss_pred cCCCEEEEEEeehHHHHHHHHHHHHHHHhCCcEEE--Ecchhhhh-cccCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHC
Confidence 466789998776432 22222233334533211 22333321 222344 6778777765444 4588999999
Q ss_pred CCCceeeccC-CCCCC-cceEEecCCC---------CCcchHHHHHHHHHHHHHHhhcCCC
Q 021262 145 NIPTIAFCDT-DSPMR-YVDIGIPANN---------KGKHSIGCLFWLLARMVLQMRGTIR 194 (315)
Q Consensus 145 nIPtIAL~DT-ds~~~-~VD~pIP~Nn---------ds~~SI~li~~lLaraVl~~rg~i~ 194 (315)
|++||+|++. +|++. ..|+.|+.+. ++..+--+++.+|+-.+.+.+|.++
T Consensus 109 ga~~iaIT~~~~S~La~~aD~~l~~~~g~E~~va~tksf~~ql~~l~~La~~l~~~~g~~~ 169 (352)
T 3g68_A 109 GCKIASMAGCKNALIDEISDYILTVNCGEEKSGAKTKGYYCTKLNLMLLGLQIAREKGIIS 169 (352)
T ss_dssp TCEEEEEESSTTCGGGGGCSEECCCCCCCCCCSSCSHHHHHHHHHHHHHHHHHHHHTTSSC
T ss_pred CCCEEEEeCCCCChHHHhCCEEEEeCCCCCccccccHHHHHHHHHHHHHHHHHHHHcCCCC
Confidence 9999999975 66664 4677776542 2222223456677777777788765
No 30
>3jx9_A Putative phosphoheptose isomerase; YP_001815198.1, structura genomics, joint center for structural genomics, JCSG; HET: MSE; 1.95A {Exiguobacterium sibiricum 255-15}
Probab=85.57 E-value=2.5 Score=36.53 Aligned_cols=96 Identities=5% Similarity=0.118 Sum_probs=58.1
Q ss_pred HHHHHHHHHHHH-hhCCCcEEEEccCchhHHHHHHHHHHhCCccccCCccC-CccCccccccccCCceEEEeC-CCCCch
Q 021262 60 EKLQMAARVIVA-IENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTP-GTFTNQMQTSFNEPRLLILTD-PRTDHQ 136 (315)
Q Consensus 60 ekL~~Aa~~I~~-I~n~~~IlfVstr~~~q~aV~kfA~~tga~~i~grw~p-GtLTN~~~~~f~eP~lLIV~D-P~~d~q 136 (315)
+.+..|+++|.. +.+++.|-+.++..-. ++...+- .+ .+|+.+ +.+.. ...+++-|.++|+. ...|..
T Consensus 22 ~~I~~AA~llaqai~~~g~IyvfG~Ghs~--~~~~e~~-~~----~e~l~~~~~~~~--~~~i~~~D~vii~S~Sg~n~~ 92 (170)
T 3jx9_A 22 DELFDVVRLLAQALVGQGKVYLDAYGEFE--GLYPMLS-DG----PDQMKRVTKIKD--HKTLHAVDRVLIFTPDTERSD 92 (170)
T ss_dssp HHHHHHHHHHHHHHHTTCCEEEEECGGGG--GGTHHHH-TS----TTCCTTEEECCT--TCCCCTTCEEEEEESCSCCHH
T ss_pred HHHHHHHHHHHHHHhCCCEEEEECCCcHH--HHHHHHH-cc----cCCccchhhhhh--cCCCCCCCEEEEEeCCCCCHH
Confidence 388999999975 6888989888887532 2222221 11 222211 11111 22567777766665 444443
Q ss_pred h---HHHhhhcCCCceeecc---CCCC-CCcceEE
Q 021262 137 P---IKEAALGNIPTIAFCD---TDSP-MRYVDIG 164 (315)
Q Consensus 137 a---I~EAs~lnIPtIAL~D---Tds~-~~~VD~p 164 (315)
+ ..+++..|+++|+|+. +++. .++.|++
T Consensus 93 ~ie~A~~ake~G~~vIaITs~~~~~~~~~~L~d~a 127 (170)
T 3jx9_A 93 LLASLARYDAWHTPYSIITLGDVTETLERSIAPLA 127 (170)
T ss_dssp HHHHHHHHHHHTCCEEEEESSCCCTTGGGSSSCEE
T ss_pred HHHHHHHHHHCCCcEEEEeCcchhccccCcHHHHH
Confidence 4 4688889999999999 3332 3566766
No 31
>3eua_A Putative fructose-aminoacid-6-phosphate deglycase; putative phosphosugar isomerase, structural genomics, joint for structural genomics, JCSG; HET: MSE FLC; 1.90A {Bacillus subtilis}
Probab=80.18 E-value=4.9 Score=37.33 Aligned_cols=72 Identities=17% Similarity=0.084 Sum_probs=44.2
Q ss_pred ccCCceEEEeCCCCC----chhHHHhhhcCCCceeeccC-CCCCC-cceEEecCCC---CCcchHHH-HHHHHHHHHHHh
Q 021262 120 FNEPRLLILTDPRTD----HQPIKEAALGNIPTIAFCDT-DSPMR-YVDIGIPANN---KGKHSIGC-LFWLLARMVLQM 189 (315)
Q Consensus 120 f~eP~lLIV~DP~~d----~qaI~EAs~lnIPtIAL~DT-ds~~~-~VD~pIP~Nn---ds~~SI~l-i~~lLaraVl~~ 189 (315)
+.+.+++|++...-+ ..+++.|+..|+++|+|++. +|++. ..|+.|+.+. .+..+-.+ .+.+|+-.+++.
T Consensus 72 l~~~dlvI~iS~SG~T~e~l~a~~~ak~~Ga~~iaIT~~~~S~La~~ad~~l~~~~g~e~~va~t~~~~l~~la~~l~~~ 151 (329)
T 3eua_A 72 LGEKSLVILCSHSGNTPETVKAAAFARGKGALTIAMTFKPESPLAQEAQYVAQYDWGDEALAINTNYGVLYQIVFGTLQV 151 (329)
T ss_dssp CSTTEEEEEEESSSCCHHHHHHHHHHHHTTCEEEEEESCTTSHHHHHSSEEEECCCSTTCCGGGSHHHHHHHHHHHHHHH
T ss_pred CCCCcEEEEEcCCCCCHHHHHHHHHHHHCCCCEEEEECCCCChHHHhCCEEEEeCCCCccchhhHHHHHHHHHHHHHHHH
Confidence 456688888765544 45788999999999999975 55553 4677765443 22222222 333444455555
Q ss_pred hc
Q 021262 190 RG 191 (315)
Q Consensus 190 rg 191 (315)
++
T Consensus 152 ~~ 153 (329)
T 3eua_A 152 LE 153 (329)
T ss_dssp HH
T ss_pred hc
Confidence 54
No 32
>3fj1_A Putative phosphosugar isomerase; YP_167080.1, structural GEN joint center for structural genomics, JCSG, protein structu initiative; HET: MSE; 1.75A {Silicibacter pomeroyi dss-3}
Probab=78.01 E-value=18 Score=33.71 Aligned_cols=94 Identities=9% Similarity=-0.008 Sum_probs=53.0
Q ss_pred hCCCcEEEEccCchh--HHHHHH-HHHHhCCccccCCccCCccCccccccccCCceEEEeCCCCC----chhHHHhhhcC
Q 021262 73 ENPGDIIVQSARPYG--QRAVLK-FAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTD----HQPIKEAALGN 145 (315)
Q Consensus 73 ~n~~~IlfVstr~~~--q~aV~k-fA~~tga~~i~grw~pGtLTN~~~~~f~eP~lLIV~DP~~d----~qaI~EAs~ln 145 (315)
.+..+|.|++..... -..... |.+..|..... ..+...+........+.+++|++...-+ ..+++.|+..|
T Consensus 41 ~~~~~I~i~G~G~S~~aa~~~~~~l~~~~g~~~~~--~~~~~~~~~~~~~~~~~dlvI~iS~SG~T~e~l~a~~~ak~~G 118 (344)
T 3fj1_A 41 RDPSFVATVARGSSDHVCTYLSYAAELLLGLPVAS--LGPSVASVYDARLRLDRALCLAVSQSGKSPDIVAMTRNAGRDG 118 (344)
T ss_dssp HCCSEEEEECCTHHHHHHHHHHHHHHHHHCCCEEE--CCTHHHHTTCCCCCCTTEEEEEEESSSCCHHHHHHHHHHHHTT
T ss_pred CCCCEEEEEEechHHHHHHHHHHHHHHHhCCcEEE--ecchHHhhhcccCCCCCcEEEEEcCCCCCHHHHHHHHHHHHCC
Confidence 577889999776532 122222 33335543211 0011111111223456678877765444 45889999999
Q ss_pred CCceeeccC-CCCCC-cceEEecCC
Q 021262 146 IPTIAFCDT-DSPMR-YVDIGIPAN 168 (315)
Q Consensus 146 IPtIAL~DT-ds~~~-~VD~pIP~N 168 (315)
.++|+|++. +|++. ..|+.|+.+
T Consensus 119 a~~iaIT~~~~S~La~~ad~~l~~~ 143 (344)
T 3fj1_A 119 ALCVALTNDAASPLAGVSAHTIDIH 143 (344)
T ss_dssp CEEEEEESCTTSHHHHTSSEEEECC
T ss_pred CcEEEEECCCCChHHHhcCEeeecC
Confidence 999999965 66553 456666543
No 33
>3fkj_A Putative phosphosugar isomerases; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 2.12A {Salmonella typhimurium LT2}
Probab=77.41 E-value=8.5 Score=36.16 Aligned_cols=107 Identities=14% Similarity=0.092 Sum_probs=57.4
Q ss_pred HHHHHHHHHHHHhhCCCcEEEEccCchh---HHHHHHHHHHh-CCccccCCccCCccCccccccccCCceEEEeCCCCC-
Q 021262 60 EKLQMAARVIVAIENPGDIIVQSARPYG---QRAVLKFAKYT-HAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTD- 134 (315)
Q Consensus 60 ekL~~Aa~~I~~I~n~~~IlfVstr~~~---q~aV~kfA~~t-ga~~i~grw~pGtLTN~~~~~f~eP~lLIV~DP~~d- 134 (315)
+.|..+++.|..-.+..+|.|+++.... +.+-.+|.+.. |..... ..++-|.......+.+.+++|++...-+
T Consensus 25 ~~i~~~~~~i~~~~~a~~I~i~G~GtS~~aa~~~~~~l~~~~~g~~~~~--~~~~e~~~~~~~~l~~~dlvI~iS~SG~T 102 (347)
T 3fkj_A 25 ENARRIISDILGKQNIERVWFVGCGGSLTGFWPGKYFLDCEASKLAVGY--ITSNEFVHATPKALGKNSVVILASQQGNT 102 (347)
T ss_dssp HHHHHHHHHHHTTSCCCEEEEEESTHHHHTTHHHHHHHHHHCSSCEEEE--EEHHHHHHSCCTTCSTTEEEEEEESSSCC
T ss_pred HHHHHHHHHHHhhCCCCEEEEEEehHHHHHHHHHHHHHHHHhCCCeEEE--eCcHHHHhhCcCCCCCCCEEEEEeCCCCc
Confidence 4455566555421256789999776432 22222222222 332211 1111111111112456688888865444
Q ss_pred ---chhHHHhhhcCCCceeeccC-CCCCC-cceEEecCC
Q 021262 135 ---HQPIKEAALGNIPTIAFCDT-DSPMR-YVDIGIPAN 168 (315)
Q Consensus 135 ---~qaI~EAs~lnIPtIAL~DT-ds~~~-~VD~pIP~N 168 (315)
..+++.|+..|++||+|+|. +|++. ..|+.|+.+
T Consensus 103 ~e~l~a~~~ak~~Ga~~iaIT~~~~S~La~~ad~~l~~~ 141 (347)
T 3fkj_A 103 AETVAAARVAREKGAATIGLVYQPDTPLCEYSDYIIEYQ 141 (347)
T ss_dssp HHHHHHHHHHHHHTCEEEEEESSTTCHHHHTCSEEEECB
T ss_pred HHHHHHHHHHHHCCCcEEEEeCCCCChHHhhcCeEEEec
Confidence 45788999999999999975 55543 466666543
No 34
>3tbf_A Glucosamine--fructose-6-phosphate aminotransferas [isomerizing]; structural genomics; 2.28A {Francisella tularensis subsp}
Probab=75.23 E-value=3.4 Score=39.30 Aligned_cols=120 Identities=11% Similarity=0.227 Sum_probs=65.8
Q ss_pred hhCCCcEEEEccCch---hHHHHHHHHHHhCCccccCCccCCccCccccccccCCceEEEeCCCCC----chhHHHhhhc
Q 021262 72 IENPGDIIVQSARPY---GQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTD----HQPIKEAALG 144 (315)
Q Consensus 72 I~n~~~IlfVstr~~---~q~aV~kfA~~tga~~i~grw~pGtLTN~~~~~f~eP~lLIV~DP~~d----~qaI~EAs~l 144 (315)
+.+..+|.|++.... ++-+-..|.+..|..... ..++-|.. ......+.+++|++...-+ ..+++.|+..
T Consensus 51 l~~a~~I~i~G~GtS~~aa~~~~~~~~~~~g~~~~~--~~~se~~~-~~~~~~~~dlvI~iS~SG~T~e~l~al~~ak~~ 127 (372)
T 3tbf_A 51 FEKTKHICIVACGTSYNAGMTAKYWIEKYAKVPCSV--EIASEIRY-RDNVVVDGSLFVSISQSGETADTLESLRKSKKQ 127 (372)
T ss_dssp HHSCCEEEEEECHHHHHHHHHHHHHHHHHTCCCEEE--EEHHHHTT-SCCCCCTTEEEEEEESSSCCHHHHHHHHHHTTT
T ss_pred HhcCCEEEEEEechHHHHHHHHHHHHHHHhCCcEEE--echhHhhh-cccCCCCCCEEEEEeCCCCCHHHHHHHHHHHHc
Confidence 356788999877643 222222233333432211 11222211 1112456788888765544 4578899999
Q ss_pred C-CCceeeccC-CCCCC-cceEEecCC---CCCc------chHHHHHHHHHHHHHHhhcCCC
Q 021262 145 N-IPTIAFCDT-DSPMR-YVDIGIPAN---NKGK------HSIGCLFWLLARMVLQMRGTIR 194 (315)
Q Consensus 145 n-IPtIAL~DT-ds~~~-~VD~pIP~N---nds~------~SI~li~~lLaraVl~~rg~i~ 194 (315)
| +++|+|++. +|++. ..|+.|+.+ ..+. .+--+++.+|+-.+.+.+|.++
T Consensus 128 G~a~~iaIT~~~~S~La~~aD~~l~~~~g~E~~~a~Tks~t~ql~~l~lL~~~l~~~~g~~~ 189 (372)
T 3tbf_A 128 NYVGSMCICNVPNSSLVRESDIAFMTKAGVEIGVASTKAFTTQLVALAIFTLVIAKLKNSLT 189 (372)
T ss_dssp TEEEEEEEESSSSSHHHHHSSEEEECCCCCCCBSSCSHHHHHHHHHHHHHHHHHHHHTTCSC
T ss_pred CCceEEEEcCCCCChHHHhCCEeeeecCCccccchhhHHHHHHHHHHHHHHHHHHHHcCCCC
Confidence 9 999999965 55543 356655543 2222 2233445566666667777765
No 35
>1moq_A Glucosamine 6-phosphate synthase; glutamine amidotransferase; HET: GLP MES; 1.57A {Escherichia coli} SCOP: c.80.1.1 PDB: 1mor_A* 1mos_A*
Probab=73.84 E-value=3.9 Score=38.45 Aligned_cols=72 Identities=13% Similarity=0.244 Sum_probs=45.8
Q ss_pred ccCCceEEEeCCCCC----chhHHHhhhcC-CCceeeccC-CCCCC-cceEEecCC--CC-------CcchHHHHHHHHH
Q 021262 120 FNEPRLLILTDPRTD----HQPIKEAALGN-IPTIAFCDT-DSPMR-YVDIGIPAN--NK-------GKHSIGCLFWLLA 183 (315)
Q Consensus 120 f~eP~lLIV~DP~~d----~qaI~EAs~ln-IPtIAL~DT-ds~~~-~VD~pIP~N--nd-------s~~SI~li~~lLa 183 (315)
..+-+++|++...-+ ..+++.|+..| +++|+|++. +|++. ..|+.|+.. .+ |..+.-+++.+|+
T Consensus 97 ~~~~dlvI~iS~SG~T~e~l~a~~~ak~~G~a~viaIT~~~~S~La~~ad~~l~~~~~~e~~~a~t~s~~~~l~~l~~L~ 176 (368)
T 1moq_A 97 VRRNSLMITLSQSGETADTLAGLRLSKELGYLGSLAICNVPGSSLVRESDLALMTNAGTEIGVASTKAFTTQLTVLLMLV 176 (368)
T ss_dssp CCTTEEEEEEESSSCCHHHHHHHHHHTTTTCSEEEEEESSTTCHHHHHSSEEEECCCCCCCSSSCSHHHHHHHHHHHHHH
T ss_pred CCCCCEEEEEeCCCCCHHHHHHHHHHHHcCCCeEEEEECCCCChHHHhCCEEEEcCCCCeecccchhhHHHHHHHHHHHH
Confidence 456788888775544 45788899999 999999886 45442 356655543 21 2223444556666
Q ss_pred HHHHHhhc
Q 021262 184 RMVLQMRG 191 (315)
Q Consensus 184 raVl~~rg 191 (315)
-.+...+|
T Consensus 177 ~~l~~~~~ 184 (368)
T 1moq_A 177 AKLSRLKG 184 (368)
T ss_dssp HHHHHHTT
T ss_pred HHHHHHcC
Confidence 66666665
No 36
>2zj3_A Glucosamine--fructose-6-phosphate aminotransferase [isomerizing] 1; glucosamine-6-phosphate synthase, aldose/ketose isomerase, rossmann-like fold; HET: G6P; 1.90A {Homo sapiens} PDB: 2zj4_A* 2v4m_A*
Probab=72.94 E-value=1.8 Score=41.07 Aligned_cols=48 Identities=13% Similarity=0.146 Sum_probs=33.1
Q ss_pred cCCceEEEeCCCCC----chhHHHhhhcCCCceeeccC-CCCCC-cceEEecCC
Q 021262 121 NEPRLLILTDPRTD----HQPIKEAALGNIPTIAFCDT-DSPMR-YVDIGIPAN 168 (315)
Q Consensus 121 ~eP~lLIV~DP~~d----~qaI~EAs~lnIPtIAL~DT-ds~~~-~VD~pIP~N 168 (315)
.+=|++|++...-+ ..+++.|+..|++||+|++. +|++. ..|+.|...
T Consensus 106 ~~~dlvI~iS~SG~T~e~l~a~~~Ak~~Ga~~iaIT~~~~S~La~~ad~~l~~~ 159 (375)
T 2zj3_A 106 FRDDVCFFLSQSGETADTLMGLRYCKERGALTVGITNTVGSSISRETDCGVHIN 159 (375)
T ss_dssp CTTEEEEEEESSSCCHHHHHHHHHHHHTTCEEEEEESCTTCHHHHHSSEEEECC
T ss_pred CCCCEEEEEeCCCCCHHHHHHHHHHHHcCCcEEEEECCCCChHHHhCCEeeeec
Confidence 44567777765444 45788999999999999986 45542 356666543
No 37
>3hba_A Putative phosphosugar isomerase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE CIT; 2.00A {Shewanella denitrificans OS217}
Probab=72.60 E-value=39 Score=31.40 Aligned_cols=94 Identities=17% Similarity=0.161 Sum_probs=54.1
Q ss_pred hCCCcEEEEccCch---hHHHHHHHHHHhCCccccCCccCCccCccccccccCCceEEEeCCCCC----chhHHHhhhcC
Q 021262 73 ENPGDIIVQSARPY---GQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTD----HQPIKEAALGN 145 (315)
Q Consensus 73 ~n~~~IlfVstr~~---~q~aV~kfA~~tga~~i~grw~pGtLTN~~~~~f~eP~lLIV~DP~~d----~qaI~EAs~ln 145 (315)
.+..+|.|++.... ++.+-.+|.+..|-.... ..+..++.+......+-+++|++...-+ ..+++.|+..|
T Consensus 40 ~~~~~I~i~G~G~S~~aa~~~~~~l~~~~g~~v~~--~~~~~~~~~~~~~~~~~dl~i~iS~SG~T~e~~~a~~~ak~~g 117 (334)
T 3hba_A 40 FKPKFVMIVGRGSSDHAGVFAKYLFEIEASIPTFA--AAPSVASVYGKTLKLAGGLVIVISQSGRSPDILAQARMAKNAG 117 (334)
T ss_dssp HCCSCEEEESSGGGCHHHHHHHHHHHHHHCCCEEE--CCHHHHHTSCCCCCCTTCEEEEEESSSCCHHHHHHHHHHHHTT
T ss_pred CCCCEEEEEEechHHHHHHHHHHHHHHHhCCcEEE--EcchHHHHhcccCCCCCCEEEEEeCCCCCHHHHHHHHHHHHcC
Confidence 56788999866543 333333444446643221 0111111111122346678777765444 45889999999
Q ss_pred CCceeeccC-CCCCC-cceEEecCC
Q 021262 146 IPTIAFCDT-DSPMR-YVDIGIPAN 168 (315)
Q Consensus 146 IPtIAL~DT-ds~~~-~VD~pIP~N 168 (315)
+++|+|++. +|++. ..|+.|+.+
T Consensus 118 ~~~i~IT~~~~S~la~~ad~~l~~~ 142 (334)
T 3hba_A 118 AFCVALVNDETAPIKDIVDVVIPLR 142 (334)
T ss_dssp CEEEEEESCTTSGGGGTSSEEEECC
T ss_pred CcEEEEeCCCCChHHHhcCEeeeec
Confidence 999999975 66654 456666543
No 38
>2poc_A D-fructose-6- PH, isomerase domain of glutamine-fructose-6-phosphat transaminase (isomerizing); glucosamine-6-phosphate synthase; HET: BG6 UD1; 1.80A {Candida albicans} PDB: 2put_A* 2puv_A* 2puw_A*
Probab=71.46 E-value=3.7 Score=38.74 Aligned_cols=48 Identities=10% Similarity=0.127 Sum_probs=33.0
Q ss_pred cCCceEEEeCCCCC----chhHHHhhhcCCCceeeccC-CCCCC-cceEEecCC
Q 021262 121 NEPRLLILTDPRTD----HQPIKEAALGNIPTIAFCDT-DSPMR-YVDIGIPAN 168 (315)
Q Consensus 121 ~eP~lLIV~DP~~d----~qaI~EAs~lnIPtIAL~DT-ds~~~-~VD~pIP~N 168 (315)
.+=|++|++...-+ ..+++.|+..|.+||+|++. +|++. ..|+.|...
T Consensus 96 ~~~dlvI~iS~SG~T~e~l~a~~~Ak~~Ga~~iaIT~~~~S~La~~ad~~l~~~ 149 (367)
T 2poc_A 96 FRDDTCVFVSQSGETADSILALQYCLERGALTVGIVNSVGSSMSRQTHCGVHIN 149 (367)
T ss_dssp CTTEEEEEEESSSCCHHHHHHHHHHHHTTCEEEEEESSTTSHHHHHSSEEEECC
T ss_pred CCCCEEEEEeCCCCCHHHHHHHHHHHHCCCCEEEEECCCCChHHHhCCEEEEcC
Confidence 34467777765444 45788999999999999986 45542 356666554
No 39
>2xci_A KDO-transferase, 3-deoxy-D-manno-2-octulosonic acid transferase; KDTA, GSEA, glycosyltransferase superfamily B,; HET: PG4; 2.00A {Aquifex aeolicus} PDB: 2xcu_A*
Probab=69.07 E-value=13 Score=34.61 Aligned_cols=90 Identities=12% Similarity=0.023 Sum_probs=51.9
Q ss_pred HHHHHHHHHHHHhhCCCcEEEEccCchhHHHHHHHHHHhCCcccc------CCccCCccCccccccccCCceEEEeCCCC
Q 021262 60 EKLQMAARVIVAIENPGDIIVQSARPYGQRAVLKFAKYTHAHAIA------GRHTPGTFTNQMQTSFNEPRLLILTDPRT 133 (315)
Q Consensus 60 ekL~~Aa~~I~~I~n~~~IlfVstr~~~q~aV~kfA~~tga~~i~------grw~pGtLTN~~~~~f~eP~lLIV~DP~~ 133 (315)
+.|..|+..+..-...-.+++|+..+.-...+++.++..|..+.. .-++.|+ ++.....+..-|++|+.....
T Consensus 210 ~~ll~A~~~l~~~~p~~~lvivG~g~~~~~~l~~~~~~~gl~~~~~~~~~~~v~~~~~-~~dl~~~y~~aDv~vl~ss~~ 288 (374)
T 2xci_A 210 EIILKAFKEIKKTYSSLKLILVPRHIENAKIFEKKARDFGFKTSFFENLEGDVILVDR-FGILKELYPVGKIAIVGGTFV 288 (374)
T ss_dssp HHHHHHHHHHHTTCTTCEEEEEESSGGGHHHHHHHHHHTTCCEEETTCCCSSEEECCS-SSCHHHHGGGEEEEEECSSSS
T ss_pred HHHHHHHHHHHhhCCCcEEEEECCCHHHHHHHHHHHHHCCCceEEecCCCCcEEEECC-HHHHHHHHHhCCEEEECCccc
Confidence 445555555443212356777886655434577777777755321 1122332 222333456678777754332
Q ss_pred C--chhHHHhhhcCCCcee
Q 021262 134 D--HQPIKEAALGNIPTIA 150 (315)
Q Consensus 134 d--~qaI~EAs~lnIPtIA 150 (315)
+ -+.+.||..+|+|+|+
T Consensus 289 e~gg~~~lEAmA~G~PVI~ 307 (374)
T 2xci_A 289 NIGGHNLLEPTCWGIPVIY 307 (374)
T ss_dssp SSCCCCCHHHHTTTCCEEE
T ss_pred CCCCcCHHHHHHhCCCEEE
Confidence 2 3678999999999996
No 40
>3iz6_A 40S ribosomal protein SA (S2P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=68.32 E-value=0.37 Score=45.74 Aligned_cols=10 Identities=40% Similarity=1.006 Sum_probs=0.0
Q ss_pred CCCCCCCCCC
Q 021262 278 GDGWDAVPAP 287 (315)
Q Consensus 278 ~~~w~~a~~~ 287 (315)
+.||..-.+|
T Consensus 284 ~~~~~~~~~~ 293 (305)
T 3iz6_A 284 APGWEQGSAP 293 (305)
T ss_dssp ----------
T ss_pred CCCcccCCCC
Confidence 4455544444
No 41
>3dfz_A SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase, cobalamin biosynthesis, NAD, oxidoreducta porphyrin biosynthesis; 2.30A {Bacillus megaterium}
Probab=64.89 E-value=7.3 Score=34.84 Aligned_cols=107 Identities=8% Similarity=0.118 Sum_probs=56.3
Q ss_pred CccccCHHHHHHHHHHHHHHHHHh-hCCCcEEEEccCchhHHHHHHHHHHhCCccccCCccCCccCccccccccCCceEE
Q 021262 49 GIYIINLGKTWEKLQMAARVIVAI-ENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLI 127 (315)
Q Consensus 49 Gi~IINL~kT~ekL~~Aa~~I~~I-~n~~~IlfVstr~~~q~aV~kfA~~tga~~i~grw~pGtLTN~~~~~f~eP~lLI 127 (315)
.+-||=..++ |++.+..+ +.+.+|.+|+.+. ...+.++++..+...+.+.|.++.|. .-++||
T Consensus 33 ~VLVVGgG~v------a~~ka~~Ll~~GA~VtVvap~~--~~~l~~l~~~~~i~~i~~~~~~~dL~--------~adLVI 96 (223)
T 3dfz_A 33 SVLVVGGGTI------ATRRIKGFLQEGAAITVVAPTV--SAEINEWEAKGQLRVKRKKVGEEDLL--------NVFFIV 96 (223)
T ss_dssp CEEEECCSHH------HHHHHHHHGGGCCCEEEECSSC--CHHHHHHHHTTSCEEECSCCCGGGSS--------SCSEEE
T ss_pred EEEEECCCHH------HHHHHHHHHHCCCEEEEECCCC--CHHHHHHHHcCCcEEEECCCCHhHhC--------CCCEEE
Confidence 4566666554 44555554 6688899998653 23456666654555555555544443 346665
Q ss_pred Ee--CCCCCchhHHHhhhcCCCceeeccCCCCCCc----------ceEEecCCCCCcc
Q 021262 128 LT--DPRTDHQPIKEAALGNIPTIAFCDTDSPMRY----------VDIGIPANNKGKH 173 (315)
Q Consensus 128 V~--DP~~d~qaI~EAs~lnIPtIAL~DTds~~~~----------VD~pIP~Nnds~~ 173 (315)
.. |+..+.+.-.+|. .|||+ -.+|.-...++ +.++|=.|-+|..
T Consensus 97 aAT~d~~~N~~I~~~ak-~gi~V-NvvD~p~~~~f~~Paiv~rg~l~iaIST~G~sP~ 152 (223)
T 3dfz_A 97 VATNDQAVNKFVKQHIK-NDQLV-NMASSFSDGNIQIPAQFSRGRLSLAISTDGASPL 152 (223)
T ss_dssp ECCCCTHHHHHHHHHSC-TTCEE-EC-----CCSEECCEEEEETTEEEEEECTTSCHH
T ss_pred ECCCCHHHHHHHHHHHh-CCCEE-EEeCCcccCeEEEeeEEEeCCEEEEEECCCCCcH
Confidence 54 2333344444555 99994 45554222222 4566666655554
No 42
>2bpl_A Glucosamine--fructose-6-phosphate aminotransferase [isomerizing]; amidotransferase, ammonia channeling, glucosamine 6- phosphate synthase; HET: F6R; 2.05A {Escherichia coli} SCOP: c.80.1.1 d.153.1.1 PDB: 1jxa_A* 2j6h_A* 2vf4_X 2vf5_X* 3ooj_A*
Probab=56.39 E-value=14 Score=37.25 Aligned_cols=117 Identities=10% Similarity=0.144 Sum_probs=62.9
Q ss_pred hhCCCcEEEEccCchhH--HHHHHHHHH-hCCccccCCccCCccCccccccccCCceEEEeCCCCC----chhHHHhhhc
Q 021262 72 IENPGDIIVQSARPYGQ--RAVLKFAKY-THAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTD----HQPIKEAALG 144 (315)
Q Consensus 72 I~n~~~IlfVstr~~~q--~aV~kfA~~-tga~~i~grw~pGtLTN~~~~~f~eP~lLIV~DP~~d----~qaI~EAs~l 144 (315)
+.+.++|.|++...... .....+..+ +|..... ..+.-+. .......+.+++|++...-+ ..+++.|+..
T Consensus 289 i~~~~~I~i~G~G~S~~~a~~~~~~~~~~~~~~~~~--~~~~e~~-~~~~~~~~~dlvI~iS~SG~T~e~l~a~~~ak~~ 365 (608)
T 2bpl_A 289 LSKVEHIQILACGTSYNSGMVSRYWFESLAGIPCDV--EIASEFR-YRKSAVRRNSLMITLSQSGETADTLAGLRLSKEL 365 (608)
T ss_dssp HHHCCEEEEEECHHHHHHHHHHHHHHHHHSCCCEEE--EEHHHHT-TSCCCCCTTEEEEEEESSSCCHHHHHHHHHHHHT
T ss_pred hcCCCEEEEEEehHHHHHHHHHHHHHHHHhCCCEEE--EehhHhh-ccCCCCCCCCEEEEEeCCcCCHHHHHHHHHHHHc
Confidence 34557888987764322 222333333 3432111 1111111 11112456788887765444 4578899999
Q ss_pred C-CCceeeccC-CCCCC-cceEEecCCC---------CCcchHHHHHHHHHHHHHHhhc
Q 021262 145 N-IPTIAFCDT-DSPMR-YVDIGIPANN---------KGKHSIGCLFWLLARMVLQMRG 191 (315)
Q Consensus 145 n-IPtIAL~DT-ds~~~-~VD~pIP~Nn---------ds~~SI~li~~lLaraVl~~rg 191 (315)
| +++|+|++. +|++. ..|+.|+... +|..+.-+++.+|+..+...+|
T Consensus 366 G~a~~IaIT~~~~S~La~~ad~~l~~~~~~E~~~a~t~s~t~~l~~~~lL~~~l~~~~~ 424 (608)
T 2bpl_A 366 GYLGSLAICNVPGSSLVRESDLALMTNAGTEIGVASTKAFTTQLTVLLMLVAKLSKLKG 424 (608)
T ss_dssp TCSEEEEEESSTTCHHHHHSSEEEECCCCCCCSSSCSHHHHHHHHHHHHHHHHHHHHTT
T ss_pred CCCeEEEEECCCCCHHHHhcCEEEEecCCceeeecchHHHHHHHHHHHHHHHHHHHhcC
Confidence 9 999999876 45442 3555555432 1223344455666666666666
No 43
>3kjx_A Transcriptional regulator, LACI family; LACL family, protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.33A {Silicibacter pomeroyi}
Probab=53.95 E-value=81 Score=28.04 Aligned_cols=101 Identities=13% Similarity=0.077 Sum_probs=55.9
Q ss_pred HHHHHHHHHHHHHHHHhh----------CCCcEEEEc---cCchhHHHHHHH---HHHhCCccccCCccCCccCcccc--
Q 021262 56 GKTWEKLQMAARVIVAIE----------NPGDIIVQS---ARPYGQRAVLKF---AKYTHAHAIAGRHTPGTFTNQMQ-- 117 (315)
Q Consensus 56 ~kT~ekL~~Aa~~I~~I~----------n~~~IlfVs---tr~~~q~aV~kf---A~~tga~~i~grw~pGtLTN~~~-- 117 (315)
..|-++++.+++-+--.- +...|-|+- ++++....+.-+ ++..|-..+.. ...+....+..
T Consensus 39 ~~tr~rV~~~~~~lgY~pn~~a~~l~~~~~~~Ig~i~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~-~~~~~~~~~~~~i 117 (344)
T 3kjx_A 39 DATRARVLAAAKELGYVPNKIAGALASNRVNLVAVIIPSLSNMVFPEVLTGINQVLEDTELQPVVG-VTDYLPEKEEKVL 117 (344)
T ss_dssp HHHHHHHHHHHHHHTCCCCCCCSCSTTSCCSEEEEEESCSSSSSHHHHHHHHHHHHTSSSSEEEEE-ECTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCCHHHHHhhcCCCCEEEEEeCCCCcHHHHHHHHHHHHHHHHCCCEEEEE-eCCCCHHHHHHHH
Confidence 378888888887764221 123455542 244555444443 33334332210 11111111100
Q ss_pred --ccccCCceEEEeCCCCCchhHHHhhhcCCCceeeccCCCC
Q 021262 118 --TSFNEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSP 157 (315)
Q Consensus 118 --~~f~eP~lLIV~DP~~d~qaI~EAs~lnIPtIAL~DTds~ 157 (315)
..-+..|.||+.....+...+.++...+||+|.+-|....
T Consensus 118 ~~l~~~~vdGiIi~~~~~~~~~~~~l~~~~iPvV~i~~~~~~ 159 (344)
T 3kjx_A 118 YEMLSWRPSGVIIAGLEHSEAARAMLDAAGIPVVEIMDSDGK 159 (344)
T ss_dssp HHHHTTCCSEEEEECSCCCHHHHHHHHHCSSCEEEEEECSSC
T ss_pred HHHHhCCCCEEEEECCCCCHHHHHHHHhCCCCEEEEeCCCCC
Confidence 0125689999987776777788888899999999665443
No 44
>3gv0_A Transcriptional regulator, LACI family; transcription regulator, PSI-II, structural genomics structure initiative; 2.35A {Agrobacterium tumefaciens str}
Probab=53.93 E-value=27 Score=30.21 Aligned_cols=44 Identities=7% Similarity=0.024 Sum_probs=31.8
Q ss_pred cCCceEEEeCCCCCchhHHHhhhcCCCceeeccCCCCCCcceEEe
Q 021262 121 NEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGI 165 (315)
Q Consensus 121 ~eP~lLIV~DP~~d~qaI~EAs~lnIPtIAL~DTds~~~~VD~pI 165 (315)
+..|.||+.....+...++++...+||+|.+ |++.+...+++..
T Consensus 65 ~~vdgiIi~~~~~~~~~~~~l~~~~iPvV~i-~~~~~~~~~~~V~ 108 (288)
T 3gv0_A 65 GSADGVIISKIEPNDPRVRFMTERNMPFVTH-GRSDMGIEHAFHD 108 (288)
T ss_dssp TCCSEEEEESCCTTCHHHHHHHHTTCCEEEE-SCCCSSCCCEEEE
T ss_pred CCccEEEEecCCCCcHHHHHHhhCCCCEEEE-CCcCCCCCCcEEE
Confidence 5678899888776667888898999999865 5554433455543
No 45
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=52.85 E-value=34 Score=32.75 Aligned_cols=91 Identities=13% Similarity=0.129 Sum_probs=51.8
Q ss_pred HHHHHHHHHHHHhhCCCcEEEEccCchhHHHHHHHHHHhCCccccCCccCCccCc-cccccccCCceEEEeCCCCCchhH
Q 021262 60 EKLQMAARVIVAIENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTN-QMQTSFNEPRLLILTDPRTDHQPI 138 (315)
Q Consensus 60 ekL~~Aa~~I~~I~n~~~IlfVstr~~~q~aV~kfA~~tga~~i~grw~pGtLTN-~~~~~f~eP~lLIV~DP~~d~qaI 138 (315)
..|..|+..|..-....++++++.......-+++.++..|...-.=+|+| ...+ .....++.-|++|+.....-...+
T Consensus 391 ~~li~a~~~l~~~~~~~~l~i~G~~g~~~~~l~~~~~~~~l~~~~v~~~g-~~~~~~~~~~~~~adv~v~ps~~~~g~~~ 469 (568)
T 2vsy_A 391 PQSMARMLAVLREVPDSVLWLLSGPGEADARLRAFAHAQGVDAQRLVFMP-KLPHPQYLARYRHADLFLDTHPYNAHTTA 469 (568)
T ss_dssp HHHHHHHHHHHHHCTTCEEEEECCSTTHHHHHHHHHHHTTCCGGGEEEEC-CCCHHHHHHHGGGCSEEECCSSSCCSHHH
T ss_pred HHHHHHHHHHHHhCCCcEEEEecCCHHHHHHHHHHHHHcCCChhHEEeeC-CCCHHHHHHHHhcCCEEeeCCCCCCcHHH
Confidence 33444444443322335666777333334556677777765311112443 3332 122335667877766655556789
Q ss_pred HHhhhcCCCceee
Q 021262 139 KEAALGNIPTIAF 151 (315)
Q Consensus 139 ~EAs~lnIPtIAL 151 (315)
-||..+|+|||++
T Consensus 470 lEAma~G~Pvv~~ 482 (568)
T 2vsy_A 470 SDALWTGCPVLTT 482 (568)
T ss_dssp HHHHHTTCCEEBC
T ss_pred HHHHhCCCCEEec
Confidence 9999999999995
No 46
>3h5t_A Transcriptional regulator, LACI family; DNA-dependent, protein structure initiative II(PSI II), NYSGXRC, 11232D), structural genomics; 2.53A {Corynebacterium glutamicum}
Probab=52.68 E-value=81 Score=28.32 Aligned_cols=58 Identities=12% Similarity=0.102 Sum_probs=37.9
Q ss_pred cCCceEEEeCCCCCchhHHHhhhcCCCceeeccCCCCCCcceEEecCCCCCcchHHHHHHHH
Q 021262 121 NEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLL 182 (315)
Q Consensus 121 ~eP~lLIV~DP~~d~qaI~EAs~lnIPtIAL~DTds~~~~VD~pIP~Nnds~~SI~li~~lL 182 (315)
+..|-||++....+...+.++...+||+|.+ |...+...+++...-| .....+....|
T Consensus 127 ~~vdGiIi~~~~~~~~~~~~l~~~~iPvV~i-~~~~~~~~~~~V~~D~---~~~~~~a~~~L 184 (366)
T 3h5t_A 127 AAVDGVVIYSVAKGDPHIDAIRARGLPAVIA-DQPAREEGMPFIAPNN---RKAIAPAAQAL 184 (366)
T ss_dssp CCCSCEEEESCCTTCHHHHHHHHHTCCEEEE-SSCCSCTTCCEEEECH---HHHTHHHHHHH
T ss_pred CCCCEEEEecCCCChHHHHHHHHCCCCEEEE-CCccCCCCCCEEEeCh---HHHHHHHHHHH
Confidence 5789999987766677888888899999965 6655434455554333 34444444333
No 47
>3c3j_A Putative tagatose-6-phosphate ketose/aldose isome; tagatose-6-phosphate ketose/aldose isomerase, structural GEN PSI, MCSG; 1.80A {Escherichia coli}
Probab=50.66 E-value=44 Score=31.42 Aligned_cols=71 Identities=10% Similarity=0.090 Sum_probs=41.5
Q ss_pred cCCceEEEeCCCCC----chhHHHhhhc--CCCceeeccCC-CCCC-cce-----EE--ec--CCCCCcchH-HHHHHHH
Q 021262 121 NEPRLLILTDPRTD----HQPIKEAALG--NIPTIAFCDTD-SPMR-YVD-----IG--IP--ANNKGKHSI-GCLFWLL 182 (315)
Q Consensus 121 ~eP~lLIV~DP~~d----~qaI~EAs~l--nIPtIAL~DTd-s~~~-~VD-----~p--IP--~Nnds~~SI-~li~~lL 182 (315)
.+.+++|++...-+ ..+++.|+.. |.++|+|++.. |++. ..| +. +| ++..+..+. .++..++
T Consensus 102 ~~~dlvI~iS~SG~T~e~l~a~~~ak~~~~ga~~iaIT~~~~S~La~~ad~~~~~~~l~~~~~~~e~~~a~t~s~t~~l~ 181 (384)
T 3c3j_A 102 AHPLLLISFGRSGNSPESVAAVELANQFVPECYHLPITCNEAGALYQNAINSDNAFALLMPAETHDRGFAMTSSITTMMA 181 (384)
T ss_dssp TSCEEEEEEESSSCCHHHHHHHHHHHHHCSSEEEEEEESCTTSHHHHHHHTCTTBCCEECCGGGSCCSSSCSHHHHHHHH
T ss_pred CCCeEEEEEeCCcCCHHHHHHHHHHHhhCCCCCEEEEECCCCCHHHhhhccCCcEEEEEecCCCcceeeeehHHHHHHHH
Confidence 36688888775544 4577888888 99999999863 4432 234 44 44 344444332 3334444
Q ss_pred HHHHHHhhc
Q 021262 183 ARMVLQMRG 191 (315)
Q Consensus 183 araVl~~rg 191 (315)
+-.+|...+
T Consensus 182 ~l~~L~~~~ 190 (384)
T 3c3j_A 182 SCLAVFAPE 190 (384)
T ss_dssp HHHHHHCTT
T ss_pred HHHHHHHhc
Confidence 444444443
No 48
>2bfw_A GLGA glycogen synthase; glycosyltransferase family 5 UDP/ADP-glucose-glycogen syntha rossman folds, transferase; 1.8A {Pyrococcus abyssi} SCOP: c.87.1.8
Probab=48.95 E-value=32 Score=27.78 Aligned_cols=88 Identities=9% Similarity=-0.030 Sum_probs=50.7
Q ss_pred HHHHHHHHHHH--HhhCCCcEEEEccCch-hHHHHHHHHHHhCCccccCCccCCccCcc-ccccccCCceEEEeCCCCC-
Q 021262 60 EKLQMAARVIV--AIENPGDIIVQSARPY-GQRAVLKFAKYTHAHAIAGRHTPGTFTNQ-MQTSFNEPRLLILTDPRTD- 134 (315)
Q Consensus 60 ekL~~Aa~~I~--~I~n~~~IlfVstr~~-~q~aV~kfA~~tga~~i~grw~pGtLTN~-~~~~f~eP~lLIV~DP~~d- 134 (315)
..|..|+..+. .-...-++++++..+. ...-++++++..+ +=+|+-|.+.+. ...-++.-|++|+......
T Consensus 53 ~~li~a~~~l~~~~~~~~~~l~i~G~~~~~~~~~l~~~~~~~~----~v~~~~g~~~~~~~~~~~~~ad~~l~ps~~e~~ 128 (200)
T 2bfw_A 53 DVLLKAIEILSSKKEFQEMRFIIIGKGDPELEGWARSLEEKHG----NVKVITEMLSREFVRELYGSVDFVIIPSYFEPF 128 (200)
T ss_dssp HHHHHHHHHHTTSGGGGGEEEEEECCBCHHHHHHHHHHHHHCT----TEEEECSCCCHHHHHHHHTTCSEEEECCSCCSS
T ss_pred HHHHHHHHHHHhhccCCCeEEEEECCCChHHHHHHHHHHHhcC----CEEEEeccCCHHHHHHHHHHCCEEEECCCCCCc
Confidence 34445554443 2112346677777651 3345666777766 223424555532 2233566788777543322
Q ss_pred chhHHHhhhcCCCceee
Q 021262 135 HQPIKEAALGNIPTIAF 151 (315)
Q Consensus 135 ~qaI~EAs~lnIPtIAL 151 (315)
...+.||..+|+|+|+-
T Consensus 129 ~~~~~Ea~a~G~PvI~~ 145 (200)
T 2bfw_A 129 GLVALEAMCLGAIPIAS 145 (200)
T ss_dssp CHHHHHHHHTTCEEEEE
T ss_pred cHHHHHHHHCCCCEEEe
Confidence 46789999999999986
No 49
>1j5x_A Glucosamine-6-phosphate deaminase; structural genomics, TM0813, glucosamine-6-phosphate deamina PSI, protein structure initiative; 1.80A {Thermotoga maritima} SCOP: c.80.1.1
Probab=48.76 E-value=12 Score=34.80 Aligned_cols=93 Identities=12% Similarity=0.025 Sum_probs=48.8
Q ss_pred hhCCCcEEEEccCchh---HHHHHHHHHHhCCccccCCccCCccCccccccc-cCCceEEEeCCCCC----chhHHHhhh
Q 021262 72 IENPGDIIVQSARPYG---QRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSF-NEPRLLILTDPRTD----HQPIKEAAL 143 (315)
Q Consensus 72 I~n~~~IlfVstr~~~---q~aV~kfA~~tga~~i~grw~pGtLTN~~~~~f-~eP~lLIV~DP~~d----~qaI~EAs~ 143 (315)
+.+.++|.|+++.... +.+-.++....|..... ..+..+ ......+ ..|+++|++...-+ ..+++.|+.
T Consensus 49 l~~~~~I~i~G~G~S~~~a~~~~~~l~~~~g~~v~~--~~~~~~-~~~~~~~~~~~dlvI~iS~SG~T~e~l~a~~~ak~ 125 (342)
T 1j5x_A 49 KNLTDEVLFVGCGSSYNLALTISYYFERVLKIRTKA--IPAGEV-AFQKIPDLEERGLAFLFSRTGNTTEVLLANDVLKK 125 (342)
T ss_dssp ---CCEEEEEESTHHHHHHHHHHHHHHHHHCCEEEE--EEHHHH-HTTCSCCCCSSEEEEEECSSSCCHHHHHHHHHHHH
T ss_pred hCCCCEEEEEEchHHHHHHHHHHHHHHHhhCCeEEE--ECchHH-HhcCcccCCCCeEEEEEcCCCCCHHHHHHHHHHHH
Confidence 4567789999876432 22222233325543211 112222 1111112 22488888876554 457889999
Q ss_pred cCCCceeeccC-CCCCC-cceEEecC
Q 021262 144 GNIPTIAFCDT-DSPMR-YVDIGIPA 167 (315)
Q Consensus 144 lnIPtIAL~DT-ds~~~-~VD~pIP~ 167 (315)
.|+++|+|++. +|++. ..|+.|..
T Consensus 126 ~Ga~vIaIT~~~~S~La~~ad~~l~~ 151 (342)
T 1j5x_A 126 RNHRTIGITIEEESRLAKESDLPLVF 151 (342)
T ss_dssp TTEEEEEEESCTTSHHHHHSSEEEEC
T ss_pred CCCCEEEEECCCCCHHHHhcCEEEEc
Confidence 99999999986 44442 34554433
No 50
>3lvj_C Sulfurtransferase TUSA; protein-protein complex, structural genomics, montreal-kings bacterial structural genomics initiative, BSGI; HET: PLP; 2.44A {Escherichia coli} SCOP: d.68.3.3 PDB: 3lvk_B* 1dcj_A
Probab=47.04 E-value=29 Score=25.84 Aligned_cols=49 Identities=10% Similarity=0.264 Sum_probs=32.3
Q ss_pred HHHHHHHHhhCCCcEEEEccCchhHHHHHHHHHHhCCccccCCccCCcc
Q 021262 64 MAARVIVAIENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTF 112 (315)
Q Consensus 64 ~Aa~~I~~I~n~~~IlfVstr~~~q~aV~kfA~~tga~~i~grw~pGtL 112 (315)
++.+.|..+..+..+.++.+.+...+-|.+||+..|-.++...--+|.+
T Consensus 26 ~~kkal~~l~~G~~l~V~~dd~~a~~di~~~~~~~G~~~~~~~~~~~~~ 74 (82)
T 3lvj_C 26 MVRKTVRNMQPGETLLIIADDPATTRDIPGFCTFMEHELVAKETDGLPY 74 (82)
T ss_dssp HHHHHHHTSCTTCEEEEEECCTTHHHHHHHHHHHTTCEEEEEECSSSSE
T ss_pred HHHHHHHhCCCCCEEEEEECCccHHHHHHHHHHHCCCEEEEEEecCCEE
Confidence 3444445554445566678888888889999999998776543334443
No 51
>3cs3_A Sugar-binding transcriptional regulator, LACI FAM; structural genomics, sugar-binding transcriptional regulator structure initiative; 2.40A {Enterococcus faecalis}
Probab=46.21 E-value=52 Score=28.12 Aligned_cols=42 Identities=14% Similarity=0.035 Sum_probs=29.0
Q ss_pred CCceEEEeCCCCCchhHHHhhhcCCCceeeccCCCCCCcceEE
Q 021262 122 EPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIG 164 (315)
Q Consensus 122 eP~lLIV~DP~~d~qaI~EAs~lnIPtIAL~DTds~~~~VD~p 164 (315)
..|.||+.....+...++++...+||+|.+ |+..+-..+++.
T Consensus 57 ~vdgiI~~~~~~~~~~~~~l~~~~iPvV~~-~~~~~~~~~~~V 98 (277)
T 3cs3_A 57 MVDGAIILDWTFPTKEIEKFAERGHSIVVL-DRTTEHRNIRQV 98 (277)
T ss_dssp TCSEEEEECTTSCHHHHHHHHHTTCEEEES-SSCCCSTTEEEE
T ss_pred cccEEEEecCCCCHHHHHHHHhcCCCEEEE-ecCCCCCCCCEE
Confidence 678888887655667788888889999977 544332234443
No 52
>1pjq_A CYSG, siroheme synthase; rossman fold, nucleotide binding motif, SAM, NAD, phosphoserine, transferase/oxidoreductase/lyase complex; HET: SEP PGE SAH; 2.21A {Salmonella typhimurium} SCOP: c.2.1.11 c.90.1.1 e.37.1.1 PDB: 1pjs_A* 1pjt_A*
Probab=45.68 E-value=67 Score=31.11 Aligned_cols=98 Identities=11% Similarity=0.060 Sum_probs=53.1
Q ss_pred HHHHHHHh-hCCCcEEEEccCchhHHHHHHHHHHhCCccccCCccCCccCccccccccCCceEEEeC--CCCCchhHHHh
Q 021262 65 AARVIVAI-ENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTD--PRTDHQPIKEA 141 (315)
Q Consensus 65 Aa~~I~~I-~n~~~IlfVstr~~~q~aV~kfA~~tga~~i~grw~pGtLTN~~~~~f~eP~lLIV~D--P~~d~qaI~EA 141 (315)
|.+.+..+ +.+.+|.+|+.+.. ..+.+++...+...+.+.|.++.|.+ -++||+.- +..|+....+|
T Consensus 24 a~~k~~~L~~~ga~V~vi~~~~~--~~~~~l~~~~~i~~~~~~~~~~~l~~--------~~lVi~at~~~~~n~~i~~~a 93 (457)
T 1pjq_A 24 AERKARLLLEAGARLTVNALTFI--PQFTVWANEGMLTLVEGPFDETLLDS--------CWLAIAATDDDTVNQRVSDAA 93 (457)
T ss_dssp HHHHHHHHHHTTBEEEEEESSCC--HHHHHHHTTTSCEEEESSCCGGGGTT--------CSEEEECCSCHHHHHHHHHHH
T ss_pred HHHHHHHHHhCcCEEEEEcCCCC--HHHHHHHhcCCEEEEECCCCccccCC--------ccEEEEcCCCHHHHHHHHHHH
Confidence 33444443 56778888876532 23444444344555555555544432 35555432 22367888999
Q ss_pred hhcCCCceeeccCCCCCC----------cceEEecCCCCCcc
Q 021262 142 ALGNIPTIAFCDTDSPMR----------YVDIGIPANNKGKH 173 (315)
Q Consensus 142 s~lnIPtIAL~DTds~~~----------~VD~pIP~Nnds~~ 173 (315)
...|||+-. +|.-...+ -+.++|=.|-+|..
T Consensus 94 ~~~~i~vn~-~d~~e~~~~~~pa~~~~~~l~iaIsT~Gksp~ 134 (457)
T 1pjq_A 94 ESRRIFCNV-VDAPKAASFIMPSIIDRSPLMVAVSSGGTSPV 134 (457)
T ss_dssp HHTTCEEEE-TTCTTSSSEECCEEEEETTEEEEEECTTSCHH
T ss_pred HHcCCEEEE-CCCcccCceEeeeEEEeCCeEEEEECCCCChH
Confidence 999999522 22211111 14677777777655
No 53
>3hgt_A HDA1 complex subunit 3; RECA-like domain, SWI2/SNF2 helical domain, chromatin regulator, coiled coil, nucleus, repressor, transcription; 2.20A {Saccharomyces cerevisiae} PDB: 3hgq_A
Probab=45.37 E-value=42 Score=31.84 Aligned_cols=131 Identities=15% Similarity=0.107 Sum_probs=73.6
Q ss_pred HHHHHHHHHHHHHHHHHh-hCCCcEEEEccCchhHHHHHHHHHHhCCccccCCccCCc----------------------
Q 021262 55 LGKTWEKLQMAARVIVAI-ENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGT---------------------- 111 (315)
Q Consensus 55 L~kT~ekL~~Aa~~I~~I-~n~~~IlfVstr~~~q~aV~kfA~~tga~~i~grw~pGt---------------------- 111 (315)
|-.+--|+..--++|..+ +.+.+||++|.....-.+++.++...|-.|. -+.|+
T Consensus 104 l~~~SGKf~~L~~LL~~l~~~~~kVLIfsq~t~~LDilE~~l~~~~~~y~---RlDG~~~~~~~k~~~~~~~i~Lltsag 180 (328)
T 3hgt_A 104 LAENSGKFSVLRDLINLVQEYETETAIVCRPGRTMDLLEALLLGNKVHIK---RYDGHSIKSAAAANDFSCTVHLFSSEG 180 (328)
T ss_dssp HHHTCHHHHHHHHHHHHHTTSCEEEEEEECSTHHHHHHHHHHTTSSCEEE---ESSSCCC-------CCSEEEEEEESSC
T ss_pred HHHcCccHHHHHHHHHHHHhCCCEEEEEECChhHHHHHHHHHhcCCCceE---eCCCCchhhhhhcccCCceEEEEECCC
Confidence 344566777777888887 6778899999877788888888887554431 12222
Q ss_pred --cCccccccccCCceEEEeCCCCC-----chhH----HH--hhhcCCCceeeccCCCCCCcceEEec--CCCCCcchHH
Q 021262 112 --FTNQMQTSFNEPRLLILTDPRTD-----HQPI----KE--AALGNIPTIAFCDTDSPMRYVDIGIP--ANNKGKHSIG 176 (315)
Q Consensus 112 --LTN~~~~~f~eP~lLIV~DP~~d-----~qaI----~E--As~lnIPtIAL~DTds~~~~VD~pIP--~Nnds~~SI~ 176 (315)
-.|....++.-+|.||++|+.-| -|++ |. ......||+=|+=++|- +.+-.-+| .|.++ -.
T Consensus 181 ~~gin~~~~nl~~aD~VI~~DsdwNp~~d~iQa~~r~~R~~~gq~k~v~V~RLvt~~Ti-Eh~~l~~~~~~~~~~---~~ 256 (328)
T 3hgt_A 181 INFTKYPIKSKARFDMLICLDTTVDTSQKDIQYLLQYKRERKGLERYAPIVRLVAINSI-DHCRLFFGKKFDKNS---RE 256 (328)
T ss_dssp CCTTTSCCCCCSCCSEEEECSTTCCTTSHHHHHHHCCC---------CCEEEEEETTSH-HHHHHHHHHHTCTTC---HH
T ss_pred CCCcCcccccCCCCCEEEEECCCCCCCChHHHHHHHHhhhccCCCCcceEEEEeCCCCH-HHHHHHccCCCCcch---HH
Confidence 12211112467899999995544 3445 33 23456788888876662 22323332 23332 34
Q ss_pred HHHHHHHHHHHHhhcCC
Q 021262 177 CLFWLLARMVLQMRGTI 193 (315)
Q Consensus 177 li~~lLaraVl~~rg~i 193 (315)
++..+++ ++...|..+
T Consensus 257 ~l~k~i~-a~v~lrd~~ 272 (328)
T 3hgt_A 257 YLENVTA-AMVILRDRL 272 (328)
T ss_dssp HHHHHHH-HHHHGGGST
T ss_pred HHHHHHH-HHHHHHhhh
Confidence 5555444 334455444
No 54
>3uow_A GMP synthetase; structural genomics consortium, SGC, purine nucleotide biosy process, ligase; HET: XMP; 2.72A {Plasmodium falciparum}
Probab=45.31 E-value=47 Score=33.33 Aligned_cols=76 Identities=12% Similarity=0.058 Sum_probs=45.2
Q ss_pred CCCcEEEEccCchhHHHHHHHHHHhCCccccCCccCCccCccccccccCCceEEEeC-CC---------CCchhHHHhhh
Q 021262 74 NPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTD-PR---------TDHQPIKEAAL 143 (315)
Q Consensus 74 n~~~IlfVstr~~~q~aV~kfA~~tga~~i~grw~pGtLTN~~~~~f~eP~lLIV~D-P~---------~d~qaI~EAs~ 143 (315)
+..+|+++....+..+.|.+.-+..|.+..--++. +......-..||.||+.. |. .+...++.+..
T Consensus 6 ~~~~IlilD~Gs~~~~~I~r~lre~Gv~~eiv~~~----~~~~~i~~~~~dgIIlsGGp~s~~~~~~~~~~~~l~~~a~~ 81 (556)
T 3uow_A 6 EYDKILVLNFGSQYFHLIVKRLNNIKIFSETKDYG----VELKDIKDMNIKGVILSGGPYSVTEAGSPHLKKEVFEYFLE 81 (556)
T ss_dssp -CCEEEEEESSCTTHHHHHHHHHHTTCCEEEEETT----CCGGGTTTSCEEEEEECCCSCCTTSTTCCCCCHHHHHHHHH
T ss_pred CCCEEEEEECCCccHHHHHHHHHHCCCeEEEEECC----CCHHHHhhcCCCEEEECCCCCcccccCCcchhHHHHHHhhh
Confidence 34678999777665666777777788765433331 112222223688888886 21 12233444555
Q ss_pred cCCCceeecc
Q 021262 144 GNIPTIAFCD 153 (315)
Q Consensus 144 lnIPtIAL~D 153 (315)
.++|+.|||-
T Consensus 82 ~g~PvLGIC~ 91 (556)
T 3uow_A 82 KKIPIFGICY 91 (556)
T ss_dssp TTCCEEEETH
T ss_pred cCCCEEEECH
Confidence 6999999983
No 55
>3r75_A Anthranilate/para-aminobenzoate synthases compone; ammonia channel, chorismate, type 1 glutamine amidotransfera phenazine biosynthesis, lyase; HET: CYG; 2.10A {Burkholderia SP} PDB: 3r74_A* 3r76_A*
Probab=44.07 E-value=45 Score=34.28 Aligned_cols=71 Identities=7% Similarity=0.027 Sum_probs=46.8
Q ss_pred CCcEEEEccCchhHHHHHHHHHHhCCccccCCccCCccCccccccccCCceEEEeC----CCCCc--------hhHHHhh
Q 021262 75 PGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTD----PRTDH--------QPIKEAA 142 (315)
Q Consensus 75 ~~~IlfVstr~~~q~aV~kfA~~tga~~i~grw~pGtLTN~~~~~f~eP~lLIV~D----P~~d~--------qaI~EAs 142 (315)
+.+|++|.........+.+.....|.....-++-- ......+|.|||+. +..+. ..|+++.
T Consensus 446 Gk~IlviD~gdsf~~~l~~~l~~~G~~v~Vv~~d~-------~~~~~~~DgIIlsGGPg~p~d~~~p~i~~~~~lI~~a~ 518 (645)
T 3r75_A 446 GCRALIVDAEDHFTAMIAQQLSSLGLATEVCGVHD-------AVDLARYDVVVMGPGPGDPSDAGDPRIARLYAWLRHLI 518 (645)
T ss_dssp TCEEEEEESSCTHHHHHHHHHHHTTCEEEEEETTC-------CCCGGGCSEEEECCCSSCTTCTTSHHHHHHHHHHHHHH
T ss_pred CCEEEEEECCccHHHHHHHHHHHCCCEEEEEECCC-------cccccCCCEEEECCCCCChhhhhhhhHHHHHHHHHHHH
Confidence 45799998776666667777777887653322211 12235689999863 33332 3567788
Q ss_pred hcCCCceeec
Q 021262 143 LGNIPTIAFC 152 (315)
Q Consensus 143 ~lnIPtIAL~ 152 (315)
..++|+.|||
T Consensus 519 ~~~iPiLGIC 528 (645)
T 3r75_A 519 DEGKPFMAVC 528 (645)
T ss_dssp HHTCCEEEET
T ss_pred HCCCCEEEEC
Confidence 8899999998
No 56
>3hz7_A Uncharacterized protein; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.00A {Desulfitobacterium hafniense}
Probab=43.87 E-value=25 Score=26.74 Aligned_cols=51 Identities=12% Similarity=0.093 Sum_probs=35.0
Q ss_pred HHHHHHHHHhh-CCCcEEEEccCchhHHHHHHHHHHhCCccccCCccCCccC
Q 021262 63 QMAARVIVAIE-NPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFT 113 (315)
Q Consensus 63 ~~Aa~~I~~I~-n~~~IlfVstr~~~q~aV~kfA~~tga~~i~grw~pGtLT 113 (315)
.++.+.|..+. .+..+.++.+.+...+-|.+||+.+|-.+....--+|.|+
T Consensus 16 l~~kkal~~l~~~G~~L~V~~dd~~a~~dI~~~~~~~G~~v~~~~~~~g~~~ 67 (87)
T 3hz7_A 16 IRAKKALAELGEAGGVVTVLVDNDISRQNLQKMAEGMGYQSEYLEKDNGVIE 67 (87)
T ss_dssp HHHHHHHHTTGGGCCEEEEEESSHHHHHHHHHHHHHHTCEEEEEECGGGCEE
T ss_pred HHHHHHHHhccCCCCEEEEEECCccHHHHHHHHHHHCCCEEEEEEecCCEEE
Confidence 34455556665 5555667788888888999999999988765443445443
No 57
>3k4h_A Putative transcriptional regulator; structural genomics, protein structure INI NEW YORK structural genomix research consortium; HET: MAL; 2.80A {Bacillus cytotoxicus nvh 391-98}
Probab=43.67 E-value=39 Score=28.97 Aligned_cols=44 Identities=14% Similarity=0.061 Sum_probs=31.4
Q ss_pred cCCceEEEeCCCCCchhHHHhhhcCCCceeeccCCCCCC-cceEEe
Q 021262 121 NEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMR-YVDIGI 165 (315)
Q Consensus 121 ~eP~lLIV~DP~~d~qaI~EAs~lnIPtIAL~DTds~~~-~VD~pI 165 (315)
+..|.||+.....+...++++...+||+|.+ |++.+.. .+++.-
T Consensus 68 ~~vdgiIi~~~~~~~~~~~~l~~~~iPvV~~-~~~~~~~~~~~~V~ 112 (292)
T 3k4h_A 68 RQIGGIILLYSRENDRIIQYLHEQNFPFVLI-GKPYDRKDEITYVD 112 (292)
T ss_dssp TCCCEEEESCCBTTCHHHHHHHHTTCCEEEE-SCCSSCTTTSCEEE
T ss_pred CCCCEEEEeCCCCChHHHHHHHHCCCCEEEE-CCCCCCCCCCCEEE
Confidence 5688999887776777888898999999876 5544332 255543
No 58
>1pav_A Hypothetical protein TA1170/TA1414; structural genomics, structure, fast NMR, semiautomated analysis; NMR {Thermoplasma acidophilum} SCOP: d.68.3.3
Probab=43.49 E-value=24 Score=25.74 Aligned_cols=47 Identities=9% Similarity=0.027 Sum_probs=30.9
Q ss_pred HHHHHhhCCCcEEEEccCchhHHHHHHHHHHhCCccccCCccCCccC
Q 021262 67 RVIVAIENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFT 113 (315)
Q Consensus 67 ~~I~~I~n~~~IlfVstr~~~q~aV~kfA~~tga~~i~grw~pGtLT 113 (315)
+.|..+..+..+.++.+.+...+-|.+||+..|-.++...=.+|.+.
T Consensus 25 ~al~~l~~G~~L~V~~dd~~a~~di~~~~~~~G~~~~~~~~~~~~~~ 71 (78)
T 1pav_A 25 KAYKQAKVGEVISVYSTDAGTKKDAPAWIQKSGQELVGVFDRNGYYE 71 (78)
T ss_dssp HHHTTSCTTCCEECCBSSSCHHHHHHHHHHHHTEEECCCCCCSSCBC
T ss_pred HHHHcCCCCCEEEEEECCccHHHHHHHHHHHCCCEEEEEEEeCCEEE
Confidence 33444444444556678888888899999999977655333455543
No 59
>3s2u_A UDP-N-acetylglucosamine--N-acetylmuramyl-(pentape pyrophosphoryl-undecaprenol N-acetylglucosamine...; N-acetylglucosaminyl transferase; HET: UD1; 2.23A {Pseudomonas aeruginosa}
Probab=42.91 E-value=19 Score=33.29 Aligned_cols=35 Identities=11% Similarity=0.117 Sum_probs=26.4
Q ss_pred cCCceEEEeCCCCCchhHHHhhhcCCCceeeccCCC
Q 021262 121 NEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDS 156 (315)
Q Consensus 121 ~eP~lLIV~DP~~d~qaI~EAs~lnIPtIAL~DTds 156 (315)
..||+||.+.......++.-|..++||+| +.+.|+
T Consensus 91 ~~PDvVi~~g~~~s~p~~laA~~~~iP~v-ihe~n~ 125 (365)
T 3s2u_A 91 LRPVCVLGLGGYVTGPGGLAARLNGVPLV-IHEQNA 125 (365)
T ss_dssp HCCSEEEECSSSTHHHHHHHHHHTTCCEE-EEECSS
T ss_pred cCCCEEEEcCCcchHHHHHHHHHcCCCEE-EEecch
Confidence 48999998877666666777899999998 444443
No 60
>3qk7_A Transcriptional regulators; structural genomics, NEW YORK structural genomix research CO NYSGXRC, PSI-2, protein structur initiative; 2.70A {Yersinia pestis}
Probab=42.45 E-value=49 Score=28.71 Aligned_cols=58 Identities=12% Similarity=0.015 Sum_probs=37.1
Q ss_pred cCCceEEEeCCCCCchhHHHhhhcCCCceeeccCCCCCCcceEEecCCCCCcchHHHHHHHH
Q 021262 121 NEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLL 182 (315)
Q Consensus 121 ~eP~lLIV~DP~~d~qaI~EAs~lnIPtIAL~DTds~~~~VD~pIP~Nnds~~SI~li~~lL 182 (315)
+..|-||+.....+...+.++...+||+|.+ |.+.+...+++...-| ..+..+....|
T Consensus 64 ~~vdGiIi~~~~~~~~~~~~l~~~~iPvV~~-~~~~~~~~~~~V~~D~---~~~~~~a~~~L 121 (294)
T 3qk7_A 64 RRVDALIVAHTQPEDFRLQYLQKQNFPFLAL-GRSHLPKPYAWFDFDN---HAGASLAVKRL 121 (294)
T ss_dssp TCCSEEEECSCCSSCHHHHHHHHTTCCEEEE-SCCCCSSCCEEEEECH---HHHHHHHHHHH
T ss_pred CCCCEEEEeCCCCChHHHHHHHhCCCCEEEE-CCCCCCCCCCEEEcCh---HHHHHHHHHHH
Confidence 4678898887766667888899999999866 5544334455544322 34444444333
No 61
>3l7n_A Putative uncharacterized protein; glutamine amidotransferase, transferas; 2.70A {Streptococcus mutans}
Probab=41.28 E-value=43 Score=29.22 Aligned_cols=71 Identities=17% Similarity=0.211 Sum_probs=41.9
Q ss_pred EEEE-ccCchhHHHHHHHHHHhCCccccCC-ccCCccCccccccccCCceEEEeC-CCC---------------CchhHH
Q 021262 78 IIVQ-SARPYGQRAVLKFAKYTHAHAIAGR-HTPGTFTNQMQTSFNEPRLLILTD-PRT---------------DHQPIK 139 (315)
Q Consensus 78 IlfV-str~~~q~aV~kfA~~tga~~i~gr-w~pGtLTN~~~~~f~eP~lLIV~D-P~~---------------d~qaI~ 139 (315)
|++| ......-..+..+++..|.....-+ +.+..+.. ....+|.|||+. |.. ....|+
T Consensus 3 i~vi~h~~~e~~g~~~~~l~~~g~~~~~~~~~~~~~~p~----~~~~~d~lii~GGp~~~~~~~~~~~~~~~~~~~~~i~ 78 (236)
T 3l7n_A 3 IHFILHETFEAPGAYLAWAALRGHDVSMTKVYRYEKLPK----DIDDFDMLILMGGPQSPSSTKKEFPYYDAQAEVKLIQ 78 (236)
T ss_dssp EEEEECCTTSCCHHHHHHHHHTTCEEEEEEGGGTCCCCS----CGGGCSEEEECCCSSCTTCCTTTCTTCCHHHHHHHHH
T ss_pred EEEEeCCCCCCchHHHHHHHHCCCeEEEEeeeCCCCCCC----CccccCEEEECCCCCCcccccccCcccchHHHHHHHH
Confidence 5554 3333445566777777776542222 22222211 245689999986 221 135677
Q ss_pred HhhhcCCCceeec
Q 021262 140 EAALGNIPTIAFC 152 (315)
Q Consensus 140 EAs~lnIPtIAL~ 152 (315)
++...++|+++||
T Consensus 79 ~~~~~~~PvLGIC 91 (236)
T 3l7n_A 79 KAAKSEKIIVGVC 91 (236)
T ss_dssp HHHHTTCEEEEET
T ss_pred HHHHcCCCEEEEc
Confidence 8888899999998
No 62
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=40.97 E-value=56 Score=33.60 Aligned_cols=106 Identities=14% Similarity=0.137 Sum_probs=66.0
Q ss_pred ccceeeecCCccccCHHHHHHHHHHHHHHHHHhhCCCcEEE-EccCchhHHHHHHHHHHhCCccccCCccCCccCccccc
Q 021262 40 RYVFKRRNDGIYIINLGKTWEKLQMAARVIVAIENPGDIIV-QSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQT 118 (315)
Q Consensus 40 ~YIyg~R~dGi~IINL~kT~ekL~~Aa~~I~~I~n~~~Ilf-Vstr~~~q~aV~kfA~~tga~~i~grw~pGtLTN~~~~ 118 (315)
.++|+.=| ..+-||.. |+ ..=++++.++ |+.+|+ .......+..++++++..|...--=.|.+.+-....-.
T Consensus 523 ~v~f~~fN-~~~Ki~p~-~~---~~W~~IL~~v--P~S~L~Ll~~~~~~~~~l~~~~~~~gi~~~r~~f~~~~~~~~~l~ 595 (723)
T 4gyw_A 523 AIVYCNFN-QLYKIDPS-TL---QMWANILKRV--PNSVLWLLRFPAVGEPNIQQYAQNMGLPQNRIIFSPVAPKEEHVR 595 (723)
T ss_dssp SEEEECCS-CGGGCCHH-HH---HHHHHHHHHC--SSEEEEEEETTGGGHHHHHHHHHHTTCCGGGEEEEECCCHHHHHH
T ss_pred CEEEEeCC-ccccCCHH-HH---HHHHHHHHhC--CCCeEEEEeCcHHHHHHHHHHHHhcCCCcCeEEECCCCCHHHHHH
Confidence 47888875 78888863 22 2223334444 555654 56666777888899988876531112333221111112
Q ss_pred cccCCceEEEeCCCCCchhHHHhhhcCCCceeec
Q 021262 119 SFNEPRLLILTDPRTDHQPIKEAALGNIPTIAFC 152 (315)
Q Consensus 119 ~f~eP~lLIV~DP~~d~qaI~EAs~lnIPtIAL~ 152 (315)
.++.-|+.+=+=|-..+.---||..+|+|||.+.
T Consensus 596 ~~~~~Di~LDt~p~~g~tT~~eal~~GvPvvt~~ 629 (723)
T 4gyw_A 596 RGQLADVCLDTPLCNGHTTGMDVLWAGTPMVTMP 629 (723)
T ss_dssp HGGGCSEEECCSSSCCSHHHHHHHHTTCCEEBCC
T ss_pred HhCCCeEEeCCCCcCCHHHHHHHHHcCCCEEEcc
Confidence 3566776655557788999999999999999985
No 63
>1gpw_B Amidotransferase HISH; lyase/transferase, complex (lyase/transferase), histidine biosynthesis, glutaminase, glutamine amidotransferase; 2.4A {Thermotoga maritima} SCOP: c.23.16.1 PDB: 1k9v_F 1kxj_A 2wjz_B
Probab=40.93 E-value=55 Score=27.43 Aligned_cols=33 Identities=9% Similarity=0.063 Sum_probs=24.5
Q ss_pred cCCceEEEeCCCC------------CchhHHHhhhcCCCceeecc
Q 021262 121 NEPRLLILTDPRT------------DHQPIKEAALGNIPTIAFCD 153 (315)
Q Consensus 121 ~eP~lLIV~DP~~------------d~qaI~EAs~lnIPtIAL~D 153 (315)
..+|.||+..+.. ....|+++...++|+.++|-
T Consensus 41 ~~~dglilpG~g~~~~~~~~l~~~~~~~~i~~~~~~~~PilGIC~ 85 (201)
T 1gpw_B 41 DLYDLLFIPGVGHFGEGMRRLRENDLIDFVRKHVEDERYVVGVCL 85 (201)
T ss_dssp SCCSEEEECCCSCSHHHHHHHHHTTCHHHHHHHHHTTCEEEEETH
T ss_pred cCCCEEEECCCCcHHHHHHHHHhhCHHHHHHHHHHcCCeEEEECh
Confidence 4578888876532 23577888788999999995
No 64
>1ka9_H Imidazole glycerol phosphtate synthase; riken structural genomics/proteomics initiative, RSGI, structural genomics, transferase; 2.30A {Thermus thermophilus} SCOP: c.23.16.1
Probab=40.74 E-value=69 Score=26.86 Aligned_cols=33 Identities=18% Similarity=0.350 Sum_probs=23.6
Q ss_pred cCCceEEEeCCCC------------CchhHHHhhhcCCCceeecc
Q 021262 121 NEPRLLILTDPRT------------DHQPIKEAALGNIPTIAFCD 153 (315)
Q Consensus 121 ~eP~lLIV~DP~~------------d~qaI~EAs~lnIPtIAL~D 153 (315)
..+|.||+..+.. ....|+++...++|+.|+|=
T Consensus 39 ~~~d~lil~G~g~~~~~~~~l~~~~~~~~i~~~~~~~~PilGIC~ 83 (200)
T 1ka9_H 39 EEADLLVLPGQGHFGQVMRAFQESGFVERVRRHLERGLPFLGICV 83 (200)
T ss_dssp SSCSEEEECCCSCHHHHHHTTSSSCTHHHHHHHHHTTCCEEECTH
T ss_pred ccCCEEEECCCCcHHHHHHHHHhcCHHHHHHHHHHcCCeEEEEcH
Confidence 4567777755322 35678888888999999984
No 65
>2fep_A Catabolite control protein A; CCPA, transcriptional regulator; HET: SEP; 2.45A {Bacillus subtilis} PDB: 2nzu_G* 1sxh_A 1sxi_A 1sxg_A* 2nzv_G* 2oen_G*
Probab=39.99 E-value=49 Score=28.65 Aligned_cols=43 Identities=5% Similarity=0.018 Sum_probs=27.6
Q ss_pred cCCceEEEeCCCCCchhHHHhhhcCCCceeeccCCCCCCcceEE
Q 021262 121 NEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIG 164 (315)
Q Consensus 121 ~eP~lLIV~DP~~d~qaI~EAs~lnIPtIAL~DTds~~~~VD~p 164 (315)
+..|.||+.....+...++++...+||+|.+ |+..+-..+++.
T Consensus 71 ~~vdgiIi~~~~~~~~~~~~l~~~~iPvV~~-~~~~~~~~~~~V 113 (289)
T 2fep_A 71 KQVDGIVFMGGNITDEHVAEFKRSPVPIVLA-ASVEEQEETPSV 113 (289)
T ss_dssp TTCSEEEECCSCCCHHHHHHHHHSSSCEEEE-SCCCTTCCSCEE
T ss_pred CCCCEEEEecCCCCHHHHHHHHhcCCCEEEE-ccccCCCCCCEE
Confidence 3467777766545556788888889999987 444332234443
No 66
>3i0z_A Putative tagatose-6-phosphate ketose/aldose isome; NP_344614.1, putative putative tagatose-6-phosphate ketose/A isomerase; HET: MSE; 1.70A {Streptococcus pneumoniae TIGR4}
Probab=39.78 E-value=2.5e+02 Score=26.56 Aligned_cols=114 Identities=14% Similarity=0.116 Sum_probs=67.2
Q ss_pred CCCcEEEEccCch---hHHHHHHHHHHhC-C----ccccCCccCCccCccccccccCCc-eEEEeCCCC------CchhH
Q 021262 74 NPGDIIVQSARPY---GQRAVLKFAKYTH-A----HAIAGRHTPGTFTNQMQTSFNEPR-LLILTDPRT------DHQPI 138 (315)
Q Consensus 74 n~~~IlfVstr~~---~q~aV~kfA~~tg-a----~~i~grw~pGtLTN~~~~~f~eP~-lLIV~DP~~------d~qaI 138 (315)
+..+++|+++... ..+.-+|+-+-+. . .+..+-|..|.+. +-.++ .+|++.+.. +...+
T Consensus 229 ~~~~~~~lGrG~~y~~A~EgALKlkE~s~Gei~a~~~~~~e~kHGP~a------lid~~~pVi~~~~~d~~~~~~~~~~~ 302 (389)
T 3i0z_A 229 DFNRVIYLGAGPFFGLAHEAQLKILELTAGQVATMYESPVGFRHGPKS------LINDNTVVLVFGTTTDYTRKYDLDLV 302 (389)
T ss_dssp CCSEEEEEESTHHHHHHHHHHHHHHHHHTTSSEEEEECHHHHTTTGGG------GCCTTEEEEEECCCSHHHHHHHHHHH
T ss_pred CCCeEEEEcCCCCHHHHHHHHHHHHHHccCcccceeecHhhccccchh------hcCCCceEEEEEcCCchhhHHHHHHH
Confidence 5567888988753 4566677777663 1 1222235566432 22233 344455543 24578
Q ss_pred HHhhhc--CCCceeeccCCCCCCc-ceEEec---CCCCCcchHH--HHHHHHHHHHHHhhcCC
Q 021262 139 KEAALG--NIPTIAFCDTDSPMRY-VDIGIP---ANNKGKHSIG--CLFWLLARMVLQMRGTI 193 (315)
Q Consensus 139 ~EAs~l--nIPtIAL~DTds~~~~-VD~pIP---~Nnds~~SI~--li~~lLaraVl~~rg~i 193 (315)
+|.... +-.+|+|++.+..... .|+.|| .-++-...+- +.+++|+..+-..||..
T Consensus 303 ~ev~arg~g~~vi~i~~~~~~~~~~~~~~i~~~~~~~~~l~pl~~~vp~QllAy~~A~~rG~d 365 (389)
T 3i0z_A 303 REVAGDQIARRVVLLSDQAFGLENVKEVALGCGGVLNDIYRVFPYIVYAQLFALLTSLKVENK 365 (389)
T ss_dssp HHHHHHTCSSEEEEEESSCCCCTTCEEEECCCSSCSCGGGGHHHHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHhccCCCeEEEEECCCcccccCceEEecCCCCcchHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 898886 5799999986543332 456666 2333333332 33688999988888875
No 67
>3d8u_A PURR transcriptional regulator; APC91343.1, vibrio parahaem RIMD 2210633, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.88A {Vibrio parahaemolyticus}
Probab=39.69 E-value=43 Score=28.39 Aligned_cols=43 Identities=12% Similarity=0.045 Sum_probs=28.6
Q ss_pred cCCceEEEeCCCCCchhHHHhhhcCCCceeeccCCCCCCcceEE
Q 021262 121 NEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIG 164 (315)
Q Consensus 121 ~eP~lLIV~DP~~d~qaI~EAs~lnIPtIAL~DTds~~~~VD~p 164 (315)
+..|.||+.....+...++++...+||+|.+ |+..+...+++.
T Consensus 58 ~~vdgii~~~~~~~~~~~~~l~~~~iPvV~~-~~~~~~~~~~~V 100 (275)
T 3d8u_A 58 SRPAGVVLFGSEHSQRTHQLLEASNTPVLEI-AELSSKASYLNI 100 (275)
T ss_dssp SCCCCEEEESSCCCHHHHHHHHHHTCCEEEE-SSSCSSSSSEEE
T ss_pred cCCCEEEEeCCCCCHHHHHHHHhCCCCEEEE-eeccCCCCCCEE
Confidence 4568888876655556788888889999987 444332334443
No 68
>3m9w_A D-xylose-binding periplasmic protein; xylose binding protein, conformational changes, SUGA protein; 2.15A {Escherichia coli} PDB: 3m9x_A* 3ma0_A*
Probab=39.45 E-value=63 Score=28.14 Aligned_cols=41 Identities=20% Similarity=0.224 Sum_probs=28.8
Q ss_pred cCCceEEEeCCCCC--chhHHHhhhcCCCceeeccCCCCCCcce
Q 021262 121 NEPRLLILTDPRTD--HQPIKEAALGNIPTIAFCDTDSPMRYVD 162 (315)
Q Consensus 121 ~eP~lLIV~DP~~d--~qaI~EAs~lnIPtIAL~DTds~~~~VD 162 (315)
+.+|.||+.....+ ...++++...|||+|.+ |++.+-..++
T Consensus 57 ~~vdgiIi~~~~~~~~~~~~~~~~~~~iPvV~~-~~~~~~~~~~ 99 (313)
T 3m9w_A 57 RGVDVLVIIPYNGQVLSNVVKEAKQEGIKVLAY-DRMINDADID 99 (313)
T ss_dssp TTCSEEEEECSSTTSCHHHHHHHHTTTCEEEEE-SSCCTTSCCS
T ss_pred cCCCEEEEeCCChhhhHHHHHHHHHCCCeEEEE-CCcCCCCCce
Confidence 46788888875554 46889999999999876 5544434443
No 69
>3egc_A Putative ribose operon repressor; structural genomics, unknown function, DNA-binding, transcri transcription regulation, PSI-2; 2.35A {Burkholderia thailandensis}
Probab=39.42 E-value=46 Score=28.62 Aligned_cols=44 Identities=14% Similarity=0.194 Sum_probs=31.5
Q ss_pred cCCceEEEeCCCCCchhHHHhhhcCCCceeeccCCCCCCcceEEe
Q 021262 121 NEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGI 165 (315)
Q Consensus 121 ~eP~lLIV~DP~~d~qaI~EAs~lnIPtIAL~DTds~~~~VD~pI 165 (315)
+.+|.||+.....+...++++...+||+|.+ |++.+...+++.-
T Consensus 63 ~~vdgiIi~~~~~~~~~~~~~~~~~iPvV~~-~~~~~~~~~~~V~ 106 (291)
T 3egc_A 63 RRVDGLILAPSEGEHDYLRTELPKTFPIVAV-NRELRIPGCGAVL 106 (291)
T ss_dssp TTCSEEEECCCSSCCHHHHHSSCTTSCEEEE-SSCCCCTTCEEEE
T ss_pred CCCCEEEEeCCCCChHHHHHhhccCCCEEEE-ecccCCCCCCEEE
Confidence 4678888887766778888888999999966 5554433455544
No 70
>3odp_A Putative tagatose-6-phosphate ketose/aldose isome; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE PG4; 2.35A {Clostridium novyi}
Probab=39.38 E-value=1.7e+02 Score=27.79 Aligned_cols=118 Identities=14% Similarity=0.049 Sum_probs=70.4
Q ss_pred CCCcEEEEccCch---hHHHHHHHHHHh-CC----ccccCCccCCccCccccccccCCc-eEEEeCCCC------CchhH
Q 021262 74 NPGDIIVQSARPY---GQRAVLKFAKYT-HA----HAIAGRHTPGTFTNQMQTSFNEPR-LLILTDPRT------DHQPI 138 (315)
Q Consensus 74 n~~~IlfVstr~~---~q~aV~kfA~~t-ga----~~i~grw~pGtLTN~~~~~f~eP~-lLIV~DP~~------d~qaI 138 (315)
+..+++|+++... ....-+|+-+-+ |. .+-.+-|..|.+. +-.++ .+|++.+.. ++..+
T Consensus 229 ~~~~~~~lGrG~~~~~A~E~ALKlkE~s~g~i~a~~~~~~e~~HGP~a------lvd~~~pvi~~~~~d~~t~~~~~~~~ 302 (393)
T 3odp_A 229 KFKRTVYLGAANAFGLAKESALKVLELTAGKIATLYDTPLGFRHGPKS------IIDDETLIVIFFSNDTYAREYEYDLL 302 (393)
T ss_dssp CCSEEEEECCTHHHHHHHHHHHHHHHHTTSSSEEEEECHHHHTTTGGG------GCCTTEEEEEECCSSHHHHHHHHHHH
T ss_pred CCCeEEEEeCCcCHHHHHHHHHHHHHHhhccchheeecHhhheecccc------ccCCCceEEEEEcCCchhhHHHHHHH
Confidence 5567888988753 466777887776 21 2334445666543 11222 344455442 34688
Q ss_pred HHhhhcC--CCceeeccCCC----CCCcceEEec-----CCCCCcchHH--HHHHHHHHHHHHhhcCCCCCCC
Q 021262 139 KEAALGN--IPTIAFCDTDS----PMRYVDIGIP-----ANNKGKHSIG--CLFWLLARMVLQMRGTIRPGHK 198 (315)
Q Consensus 139 ~EAs~ln--IPtIAL~DTds----~~~~VD~pIP-----~Nnds~~SI~--li~~lLaraVl~~rg~i~~~~~ 198 (315)
+|....| -.+|+|+|... ......+.|| ..++-...+- +.+++|+..+-..||.. .+.|
T Consensus 303 ~ev~arg~~~~vi~i~~~~~~~~~~~~~~~i~~p~~~~~~~~~~l~pi~~~ip~Qllay~~A~~~G~d-pD~P 374 (393)
T 3odp_A 303 KEVYSQNGNHKVLAISEYEDKLIEDNSDYFIAINKEEQEYEDDSFLSLDYLLNAQMYAFINSMELGIG-PDNP 374 (393)
T ss_dssp HHHHHSSSCCEEEEEEEECCHHHHTTCSEEEEEESSCCCCSSGGGGHHHHHHHHHHHHHHHHHHHTCC-TTCS
T ss_pred HHHHhcCCCceEEEEEcCCcchhccCCcEEEEeCCccccCCChHHhHHHHHHHHHHHHHHHHHHcCCC-CCCC
Confidence 9999988 89999987542 1223445578 3333333332 33688998888888875 3444
No 71
>3hcw_A Maltose operon transcriptional repressor; RNA-binding, PSI-2, NYSGXRC, STRU genomics, protein structure initiative; 2.20A {Staphylococcus aureus subsp}
Probab=39.23 E-value=40 Score=29.31 Aligned_cols=36 Identities=11% Similarity=0.091 Sum_probs=26.8
Q ss_pred cCCceEEEeCCCCCchhHHHhhhcCCCceeeccCCCC
Q 021262 121 NEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSP 157 (315)
Q Consensus 121 ~eP~lLIV~DP~~d~qaI~EAs~lnIPtIAL~DTds~ 157 (315)
+..|-||+.....+...+.++...+||+|.+ |.+.+
T Consensus 67 ~~vdGiI~~~~~~~~~~~~~l~~~~iPvV~i-~~~~~ 102 (295)
T 3hcw_A 67 RMVDAFILLYSKENDPIKQMLIDESMPFIVI-GKPTS 102 (295)
T ss_dssp TCCSEEEESCCCTTCHHHHHHHHTTCCEEEE-SCCCS
T ss_pred CCcCEEEEcCcccChHHHHHHHhCCCCEEEE-CCCCc
Confidence 4578888887666667788888899999866 44443
No 72
>3m3p_A Glutamine amido transferase; structural genomics, nysgrc, PSI-2; HET: MSE; 1.30A {Methylobacillus flagellatus} PDB: 3l83_A*
Probab=38.98 E-value=62 Score=28.94 Aligned_cols=74 Identities=15% Similarity=0.183 Sum_probs=44.7
Q ss_pred CCcEEEEc-cCchhHHHHHHHHHHhCCccccCCccCCc-cCccccccccCCceEEEeCCCC---C--------chhHHHh
Q 021262 75 PGDIIVQS-ARPYGQRAVLKFAKYTHAHAIAGRHTPGT-FTNQMQTSFNEPRLLILTDPRT---D--------HQPIKEA 141 (315)
Q Consensus 75 ~~~IlfVs-tr~~~q~aV~kfA~~tga~~i~grw~pGt-LTN~~~~~f~eP~lLIV~DP~~---d--------~qaI~EA 141 (315)
..+|++|- .....-..+.++.+..|.....-+...|. +. .....+|.|||+.-.. | ...|+++
T Consensus 3 ~~~vliiqh~~~e~~~~i~~~l~~~G~~v~v~~~~~~~~~p----~~~~~~d~lIl~GGp~~~~d~~~~~~~~~~~i~~~ 78 (250)
T 3m3p_A 3 LKPVMIIQFSASEGPGHFGDFLAGEHIPFQVLRMDRSDPLP----AEIRDCSGLAMMGGPMSANDDLPWMPTLLALIRDA 78 (250)
T ss_dssp CCCEEEEESSSSCCCHHHHHHHHHTTCCEEEEEGGGTCCCC----SCGGGSSEEEECCCSSCTTSCCTTHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHCCCeEEEEeccCCCcCc----CccccCCEEEECCCCCcccccchHHHHHHHHHHHH
Confidence 35677774 34345566777788888765333322221 21 1245679999986221 1 2456777
Q ss_pred hhcCCCceeec
Q 021262 142 ALGNIPTIAFC 152 (315)
Q Consensus 142 s~lnIPtIAL~ 152 (315)
...++|+++||
T Consensus 79 ~~~~~PvlGIC 89 (250)
T 3m3p_A 79 VAQRVPVIGHC 89 (250)
T ss_dssp HHHTCCEEEET
T ss_pred HHcCCCEEEEC
Confidence 77899999998
No 73
>1tjy_A Sugar transport protein; protein-ligand complex, signaling protein; HET: PAV; 1.30A {Salmonella typhimurium} SCOP: c.93.1.1 PDB: 1tm2_A 3t95_A* 3ejw_A*
Probab=38.91 E-value=41 Score=29.80 Aligned_cols=35 Identities=17% Similarity=0.324 Sum_probs=24.9
Q ss_pred cCCceEEEeCCCCC--chhHHHhhhcCCCceeeccCCC
Q 021262 121 NEPRLLILTDPRTD--HQPIKEAALGNIPTIAFCDTDS 156 (315)
Q Consensus 121 ~eP~lLIV~DP~~d--~qaI~EAs~lnIPtIAL~DTds 156 (315)
+..|.||+.-...+ ...++++...|||+|.+ |+..
T Consensus 59 ~~vdgiii~~~~~~~~~~~~~~a~~~gipvV~~-d~~~ 95 (316)
T 1tjy_A 59 QGYDAIIVSAVSPDGLCPALKRAMQRGVKILTW-DSDT 95 (316)
T ss_dssp TTCSEEEECCSSSSTTHHHHHHHHHTTCEEEEE-SSCC
T ss_pred cCCCEEEEeCCCHHHHHHHHHHHHHCcCEEEEe-cCCC
Confidence 46788877654333 45788888899999987 5543
No 74
>1tzb_A Glucose-6-phosphate isomerase, conjectural; enzyme, crenarchaeon, hyperthermophIle, PGI family; 1.16A {Pyrobaculum aerophilum} SCOP: c.80.1.1 PDB: 1tzc_A* 1x9h_A* 1x9i_A*
Probab=38.90 E-value=63 Score=29.22 Aligned_cols=44 Identities=16% Similarity=0.184 Sum_probs=33.1
Q ss_pred cCCceEEEeCCCCC----chhHHHhhhcCCCceeeccCCCCCCcceEEe
Q 021262 121 NEPRLLILTDPRTD----HQPIKEAALGNIPTIAFCDTDSPMRYVDIGI 165 (315)
Q Consensus 121 ~eP~lLIV~DP~~d----~qaI~EAs~lnIPtIAL~DTds~~~~VD~pI 165 (315)
.+-|++|++...-+ ..+++.|+..|+++|+|++.. ++...|+.+
T Consensus 78 ~~~dlvI~iS~SG~T~e~~~a~~~ak~~g~~~iaIT~~~-~La~~~~~l 125 (302)
T 1tzb_A 78 ARDGLLIAVSYSGNTIETLYTVEYAKRRRIPAVAITTGG-RLAQMGVPT 125 (302)
T ss_dssp CSSSEEEEECSSSCCHHHHHHHHHHHHTTCCEEEEESST-TGGGSSSCE
T ss_pred CCCCEEEEEeCCCCCHHHHHHHHHHHHCCCeEEEECCCc-hHHHCCeeE
Confidence 56788888875554 457889999999999999987 654335555
No 75
>3cf4_G Acetyl-COA decarboxylase/synthase epsilon subunit; methanomicrobia, iron-nikel-sulfur, 4Fe-NI-4S, oxidoreductas; 2.00A {Methanosarcina barkeri}
Probab=38.73 E-value=54 Score=27.27 Aligned_cols=56 Identities=13% Similarity=0.133 Sum_probs=35.3
Q ss_pred EEEEcc---CchhHHHHHHHHHHhCCccccC--------------Cc--cC--CccCccc-c---ccccCCceEEEeCCC
Q 021262 78 IIVQSA---RPYGQRAVLKFAKYTHAHAIAG--------------RH--TP--GTFTNQM-Q---TSFNEPRLLILTDPR 132 (315)
Q Consensus 78 IlfVst---r~~~q~aV~kfA~~tga~~i~g--------------rw--~p--GtLTN~~-~---~~f~eP~lLIV~DP~ 132 (315)
+++++. +....+.+.+|++++|...++. .+ +| |.+.+.. . ..+.+-|+||++..+
T Consensus 38 vil~G~g~~~~~a~~~l~~lae~~~iPV~~t~~gkg~~~~~hp~~~~~~~G~~G~~~~~~~~~~~~~~~~aDlvl~iG~~ 117 (170)
T 3cf4_G 38 LLMVGTLALDPELLDRVVKISKAANIPIAATGSSLAVLADKDVDAKYINAHMLGFYLTDPKWPGLDGNGNYDMIITIGFK 117 (170)
T ss_dssp EEEECSTTCCHHHHHHHHHHHHHHTCCEEECTTTHHHHTTSSSCEEECCHHHHHHHTTCTTCCCSSSSCCCSEEEEESCC
T ss_pred EEEECCCccchhHHHHHHHHHHHhCCCEEECcccCcccCCCChhhhcceeeeccccCChhhhhHHHHhhcCCEEEEECCc
Confidence 666765 2356778999999999876653 11 11 1111111 1 335789999999987
Q ss_pred C
Q 021262 133 T 133 (315)
Q Consensus 133 ~ 133 (315)
-
T Consensus 118 ~ 118 (170)
T 3cf4_G 118 K 118 (170)
T ss_dssp H
T ss_pred c
Confidence 6
No 76
>2e5f_A Hypothetical protein PH0510; structural genomics, sugar binding protein, NPPSFA, national on protein structural and functional analyses; 1.35A {Pyrococcus horikoshii} PDB: 2dec_A* 2df8_A 2cb0_A*
Probab=38.66 E-value=16 Score=33.56 Aligned_cols=62 Identities=11% Similarity=0.138 Sum_probs=0.0
Q ss_pred CCceEEEeCCCCC----chhHHHhhhcCCCceeeccCCCCCCc-ceEEecCCC--------CCcchHHHHHHHHHHHH
Q 021262 122 EPRLLILTDPRTD----HQPIKEAALGNIPTIAFCDTDSPMRY-VDIGIPANN--------KGKHSIGCLFWLLARMV 186 (315)
Q Consensus 122 eP~lLIV~DP~~d----~qaI~EAs~lnIPtIAL~DTds~~~~-VD~pIP~Nn--------ds~~SI~li~~lLaraV 186 (315)
.|+++|++...-+ ..+++.|+ .++|+|++.+|++.. .|+.|.... +|..+.-+++.+|+..+
T Consensus 79 ~~dlvI~iS~SG~T~e~l~a~~~ak---a~viaIT~~~S~La~~ad~~l~~~~~e~~~a~t~s~~~~l~~l~~L~~~~ 153 (325)
T 2e5f_A 79 EVELAVGISRSGETTEILLALEKIN---VKKLGITTRESSLTRMCDYSLVVPAIEESVVMTHSFTSFYFAYLQLLRYS 153 (325)
T ss_dssp SCSEEEEECSSSCCHHHHHHHHTCC---SCEEEEESSSCHHHHHSSEEEECCCCCCSSSCCHHHHHHHHHHHHHHHHH
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHhC---CCEEEEECCCCHHHHhcCEEEecCCccceecccHHHHHHHHHHHHHHHHH
No 77
>2rgy_A Transcriptional regulator, LACI family; 11011J, NYSGXRC, transctiptional regulator, SUG binding protein, structural genomics, PSI-2; 2.05A {Burkholderia phymatum}
Probab=38.61 E-value=54 Score=28.28 Aligned_cols=43 Identities=2% Similarity=-0.134 Sum_probs=28.3
Q ss_pred cCCceEEEeCCCCCchhHHHhhhcCCCceeeccCCCCCCcceEE
Q 021262 121 NEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIG 164 (315)
Q Consensus 121 ~eP~lLIV~DP~~d~qaI~EAs~lnIPtIAL~DTds~~~~VD~p 164 (315)
+..|.||+.....+...++++...+||+|.+ |++.+-..+++.
T Consensus 66 ~~vdgiIi~~~~~~~~~~~~l~~~~iPvV~~-~~~~~~~~~~~V 108 (290)
T 2rgy_A 66 RDCDGVVVISHDLHDEDLDELHRMHPKMVFL-NRAFDALPDASF 108 (290)
T ss_dssp TTCSEEEECCSSSCHHHHHHHHHHCSSEEEE-SSCCTTSGGGEE
T ss_pred cCccEEEEecCCCCHHHHHHHhhcCCCEEEE-ccccCCCCCCEE
Confidence 4578888876555556677787789999987 444332234444
No 78
>3knz_A Putative sugar binding protein; structural genomics, joint C structural genomics, JCSG, protein structure initiative; 2.50A {Salmonella enterica subsp}
Probab=38.18 E-value=1.6e+02 Score=27.55 Aligned_cols=114 Identities=13% Similarity=0.130 Sum_probs=64.7
Q ss_pred hCCCcEEEEccCch---hHHHHHHHHHHhCCc---cccCCccCCccCccccccccCCc-eEEEeCCCCC---chhHHHhh
Q 021262 73 ENPGDIIVQSARPY---GQRAVLKFAKYTHAH---AIAGRHTPGTFTNQMQTSFNEPR-LLILTDPRTD---HQPIKEAA 142 (315)
Q Consensus 73 ~n~~~IlfVstr~~---~q~aV~kfA~~tga~---~i~grw~pGtLTN~~~~~f~eP~-lLIV~DP~~d---~qaI~EAs 142 (315)
.+..+++|+|+... ..+.-+|+-+-+..+ |-.+-|..|.+. +-.++ .||++.+..+ ...++|..
T Consensus 221 ~~~~~~~~lGrG~~~~~A~EgALKlkE~s~i~ae~~~a~E~~HGP~a------lid~~~pvi~~~~~~~~~~~~~~~~l~ 294 (366)
T 3knz_A 221 RDSADIRLTGPATLFGTVQEGALKMLETLRCPVSGYEFEEFIHGIYN------AFNAQSALIMLDPQPDARQDRLAQILG 294 (366)
T ss_dssp HTCSEEEEEECGGGHHHHHHHHHHHHHHHCSCEEEEEHHHHHHTHHH------HCCTTEEEEEECSSCCHHHHHHHHHHH
T ss_pred cCCCeEEEEeCCCCHHHHHHHHHHHHHHhcccceeechhhcCcCchh------hhCCCceEEEEecCchHHHHHHHHHHH
Confidence 46678899988653 456666776665432 233444444321 12222 3555666433 35677888
Q ss_pred hcCCCceeeccCCCCCCcceEEecCCCCCcch-H--HHHHHHHHHHHHHhhcCC
Q 021262 143 LGNIPTIAFCDTDSPMRYVDIGIPANNKGKHS-I--GCLFWLLARMVLQMRGTI 193 (315)
Q Consensus 143 ~lnIPtIAL~DTds~~~~VD~pIP~Nnds~~S-I--~li~~lLaraVl~~rg~i 193 (315)
..+-.++.|++.+.. ...++.||...+..-+ + -..+++|+..+-..||..
T Consensus 295 ~~g~~vi~i~~~~~~-~~~~~~~p~~~~~~l~pl~~~v~~Qllay~~A~~rG~d 347 (366)
T 3knz_A 295 EWTPSIYRIGPQVEN-NGLNLNFPFVNDEDFAVFEYIIPLQMLCAILPPQKGIN 347 (366)
T ss_dssp HHCSCEEEEESSSCC-SSSSEECCCCCCTTTTHHHHHHHHHHHHHHCC------
T ss_pred HcCCeEEEEecCCCc-cceeEEeCCCCchHHHHHHHHHHHHHHHHHHHHHhCcC
Confidence 889999999876542 5677888874333222 2 334677777777777763
No 79
>2jjm_A Glycosyl transferase, group 1 family protein; anthrax, nucleotide, carbohydrate; 3.10A {Bacillus anthracis} PDB: 3mbo_A*
Probab=37.49 E-value=1e+02 Score=27.55 Aligned_cols=100 Identities=14% Similarity=0.123 Sum_probs=56.3
Q ss_pred HHHHHHHHHHHHHHHHhhCCCcEEEEccCchhHHHHHHHHHHhCCccccCCccCCccCccccccccCCceEEEeCCCCC-
Q 021262 56 GKTWEKLQMAARVIVAIENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTD- 134 (315)
Q Consensus 56 ~kT~ekL~~Aa~~I~~I~n~~~IlfVstr~~~q~aV~kfA~~tga~~i~grw~pGtLTN~~~~~f~eP~lLIV~DP~~d- 134 (315)
.|-.+.|..|+..+..- .+-++++++..+.. ..+++.++..|..- +=+|+| . .+....-+..-|++|+....+.
T Consensus 223 ~Kg~~~li~a~~~l~~~-~~~~l~i~G~g~~~-~~l~~~~~~~~l~~-~v~~~g-~-~~~~~~~~~~adv~v~ps~~e~~ 297 (394)
T 2jjm_A 223 VKRVQDVVQAFAKIVTE-VDAKLLLVGDGPEF-CTILQLVKNLHIED-RVLFLG-K-QDNVAELLAMSDLMLLLSEKESF 297 (394)
T ss_dssp GGTHHHHHHHHHHHHHS-SCCEEEEECCCTTH-HHHHHHHHTTTCGG-GBCCCB-S-CSCTHHHHHTCSEEEECCSCCSC
T ss_pred ccCHHHHHHHHHHHHhh-CCCEEEEECCchHH-HHHHHHHHHcCCCC-eEEEeC-c-hhhHHHHHHhCCEEEeccccCCC
Confidence 34445555555555432 34677788866543 34566666655321 112443 2 2333334567788777653222
Q ss_pred chhHHHhhhcCCCceeeccCCCCCCcc
Q 021262 135 HQPIKEAALGNIPTIAFCDTDSPMRYV 161 (315)
Q Consensus 135 ~qaI~EAs~lnIPtIAL~DTds~~~~V 161 (315)
...+-||...|+|+|+- |.....+.+
T Consensus 298 ~~~~~EAma~G~PvI~~-~~~~~~e~v 323 (394)
T 2jjm_A 298 GLVLLEAMACGVPCIGT-RVGGIPEVI 323 (394)
T ss_dssp CHHHHHHHHTTCCEEEE-CCTTSTTTC
T ss_pred chHHHHHHhcCCCEEEe-cCCChHHHh
Confidence 46789999999999986 343334443
No 80
>3bbl_A Regulatory protein of LACI family; protein structure initiative II, PSI-II, NYSGXRC, transcript regulator, periplasmic binding protein; 2.35A {Chloroflexus aggregans}
Probab=37.24 E-value=66 Score=27.68 Aligned_cols=35 Identities=11% Similarity=0.187 Sum_probs=25.8
Q ss_pred cCCceEEEeCCCCCchhHHHhhhcCCCceeeccCCC
Q 021262 121 NEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDS 156 (315)
Q Consensus 121 ~eP~lLIV~DP~~d~qaI~EAs~lnIPtIAL~DTds 156 (315)
+..|.||+.....+...++++...+||+|.+ |++.
T Consensus 63 ~~vdgiIi~~~~~~~~~~~~l~~~~iPvV~~-~~~~ 97 (287)
T 3bbl_A 63 GNVDGFVLSSINYNDPRVQFLLKQKFPFVAF-GRSN 97 (287)
T ss_dssp TCCSEEEECSCCTTCHHHHHHHHTTCCEEEE-SCCS
T ss_pred CCCCEEEEeecCCCcHHHHHHHhcCCCEEEE-CCcC
Confidence 5678888876655556788888889999977 4443
No 81
>3brq_A HTH-type transcriptional regulator ASCG; transcriptional repressor structure escherichia coli, struct genomics, PSI-2; HET: FRU; 2.00A {Escherichia coli}
Probab=37.24 E-value=70 Score=27.23 Aligned_cols=43 Identities=5% Similarity=-0.055 Sum_probs=28.5
Q ss_pred cCCceEEEeCCCCCchhHHHhhh-cCCCceeeccCCCCCCcceEE
Q 021262 121 NEPRLLILTDPRTDHQPIKEAAL-GNIPTIAFCDTDSPMRYVDIG 164 (315)
Q Consensus 121 ~eP~lLIV~DP~~d~qaI~EAs~-lnIPtIAL~DTds~~~~VD~p 164 (315)
+..|.||+.....+...+.++.. .+||+|.+ |+..+-..+++.
T Consensus 76 ~~vdgii~~~~~~~~~~~~~l~~~~~iPvV~~-~~~~~~~~~~~V 119 (296)
T 3brq_A 76 LRCDAIMIYPRFLSVDEIDDIIDAHSQPIMVL-NRRLRKNSSHSV 119 (296)
T ss_dssp TTCSEEEEECSSSCHHHHHHHHHTCSSCEEEE-SCCCSSSGGGEE
T ss_pred cCCCEEEEecCCCChHHHHHHHhcCCCCEEEE-ccccCCCCCCEE
Confidence 46788888766555566778877 89999876 554433334443
No 82
>3rot_A ABC sugar transporter, periplasmic sugar binding; nysgrc, PSI-biology, structural genomics; 1.91A {Legionella pneumophila subsp}
Probab=37.20 E-value=55 Score=28.34 Aligned_cols=36 Identities=31% Similarity=0.355 Sum_probs=26.6
Q ss_pred cCCceEEEeCCCCC--chhHHHhhhcCCCceeeccCCCC
Q 021262 121 NEPRLLILTDPRTD--HQPIKEAALGNIPTIAFCDTDSP 157 (315)
Q Consensus 121 ~eP~lLIV~DP~~d--~qaI~EAs~lnIPtIAL~DTds~ 157 (315)
+.+|.||+.....+ ...++++...|||+|.+ |++.+
T Consensus 60 ~~vdgiii~~~~~~~~~~~~~~~~~~giPvV~~-~~~~~ 97 (297)
T 3rot_A 60 TYPSGIATTIPSDTAFSKSLQRANKLNIPVIAV-DTRPK 97 (297)
T ss_dssp TCCSEEEECCCCSSTTHHHHHHHHHHTCCEEEE-SCCCS
T ss_pred cCCCEEEEeCCCHHHHHHHHHHHHHCCCCEEEE-cCCCc
Confidence 45788888765555 67888999999999976 44443
No 83
>4fmw_A RNA (guanine-9-)-methyltransferase domain-contain protein 2; structural genomics, structural genomics consortium, SGC, RN modification; HET: SAH; 2.00A {Homo sapiens}
Probab=35.82 E-value=68 Score=28.03 Aligned_cols=74 Identities=8% Similarity=-0.059 Sum_probs=42.5
Q ss_pred HHHHHHHHHHHHHHHHHhhCCCcEEEEccCchhHHHHHHHHHHhCCccccCCccCCccCccccccccCCceEEEeCCCCC
Q 021262 55 LGKTWEKLQMAARVIVAIENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTD 134 (315)
Q Consensus 55 L~kT~ekL~~Aa~~I~~I~n~~~IlfVstr~~~q~aV~kfA~~tga~~i~grw~pGtLTN~~~~~f~eP~lLIV~DP~~d 134 (315)
+..+..+|...+........|.++.|.|......+ ...+....+ .+|.+-++|...-.....++=||.++|..+
T Consensus 38 ~~sl~~Ql~~~y~~nRr~~~p~~l~~t~~~~~~~~----~~~~~~~~~--~~~~~~~~~~~~~~~~f~~~~iVYLtpDs~ 111 (197)
T 4fmw_A 38 IKKLHKQIQRCYAENRRALHPVQFYLTSHGGQLKK----NMDENDKGW--VNWKDIHIKPEHYSELIKKEDLIYLTSDSP 111 (197)
T ss_dssp HHHHHHHHHHHHHHHHHCSSCCEEEEESCCHHHHH----HHHHHCGGG--GTCSSCEECSSCHHHHSCGGGEEEECTTCS
T ss_pred HHHHHHHHHHHHHHHHcCCCCceEEEeCCChHHHH----HHHHhhccC--ccccceeecCccHHHhCCcccEEEECCCch
Confidence 66888889988888888888999998887643332 222222111 245555555443222223334555555444
No 84
>1f0k_A MURG, UDP-N-acetylglucosamine-N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol...; rossmann fold, transferase; 1.90A {Escherichia coli} SCOP: c.87.1.2 PDB: 1nlm_A*
Probab=35.75 E-value=66 Score=28.39 Aligned_cols=84 Identities=10% Similarity=0.071 Sum_probs=45.7
Q ss_pred HHHHHHHHHHHHHHHHhhCCCcEEE-EccCchhHHHHHHHHHHhCCccccCCccCCccCccccccccCCceEEEeCCCCC
Q 021262 56 GKTWEKLQMAARVIVAIENPGDIIV-QSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTD 134 (315)
Q Consensus 56 ~kT~ekL~~Aa~~I~~I~n~~~Ilf-Vstr~~~q~aV~kfA~~tga~~i~grw~pGtLTN~~~~~f~eP~lLIV~DP~~d 134 (315)
++-.+.|..|+..+.. +-++++ ++..+. ..+.+.++..|.. +=+|+| .. +....-++.-|++|+.. .
T Consensus 196 ~k~~~~li~a~~~l~~---~~~~l~i~G~~~~--~~l~~~~~~~~~~--~v~~~g-~~-~~~~~~~~~ad~~v~~s---g 263 (364)
T 1f0k_A 196 RILNQTMPQVAAKLGD---SVTIWHQSGKGSQ--QSVEQAYAEAGQP--QHKVTE-FI-DDMAAAYAWADVVVCRS---G 263 (364)
T ss_dssp HHHHHHHHHHHHHHGG---GEEEEEECCTTCH--HHHHHHHHHTTCT--TSEEES-CC-SCHHHHHHHCSEEEECC---C
T ss_pred HHHHHHHHHHHHHhcC---CcEEEEEcCCchH--HHHHHHHhhcCCC--ceEEec-ch-hhHHHHHHhCCEEEECC---c
Confidence 4444555555544422 334333 455442 3455556655532 112333 22 33333345667776653 2
Q ss_pred chhHHHhhhcCCCceee
Q 021262 135 HQPIKEAALGNIPTIAF 151 (315)
Q Consensus 135 ~qaI~EAs~lnIPtIAL 151 (315)
...+.||..+|+|+|+.
T Consensus 264 ~~~~~EAma~G~Pvi~~ 280 (364)
T 1f0k_A 264 ALTVSEIAAAGLPALFV 280 (364)
T ss_dssp HHHHHHHHHHTCCEEEC
T ss_pred hHHHHHHHHhCCCEEEe
Confidence 68899999999999997
No 85
>2zxr_A Single-stranded DNA specific exonuclease RECJ; DNA repair, hydrolase; 2.15A {Thermus thermophilus} PDB: 2zxo_A 2zxp_A 1ir6_A
Probab=34.86 E-value=1.6e+02 Score=30.45 Aligned_cols=94 Identities=18% Similarity=0.221 Sum_probs=39.8
Q ss_pred HHHHHHHHH-HhhCCCcEEEEccCch----hHHHHHHHHHHhCC---ccccCCccCCc--cCccccccccCCceEEEeCC
Q 021262 62 LQMAARVIV-AIENPGDIIVQSARPY----GQRAVLKFAKYTHA---HAIAGRHTPGT--FTNQMQTSFNEPRLLILTDP 131 (315)
Q Consensus 62 L~~Aa~~I~-~I~n~~~IlfVstr~~----~q~aV~kfA~~tga---~~i~grw~pGt--LTN~~~~~f~eP~lLIV~DP 131 (315)
+.+|+..|. +|++..+|++++-... ..-++.++.+..|. +|+.+|+..|. ....+......+++||++|.
T Consensus 58 m~~Av~~i~~aI~~~ekI~I~GH~D~DGi~Saa~L~~~L~~lG~~v~~~ip~r~~egygl~~~~I~~~~~~~~LIItVD~ 137 (666)
T 2zxr_A 58 LREAAALLEEALRQGKRIRVHGDYDADGLTGTAILVRGLAALGADVHPFIPHRLEEGYGVLMERVPEHLEASDLFLTVDC 137 (666)
T ss_dssp HHHHHHHHHHHHHTTCEEEEECCSSHHHHHHHHHHHHHHHHTTCEEEECCC--------------------CCEEEESCC
T ss_pred HHHHHHHHHHHHHcCCeEEEEeccCCchHHHHHHHHHHHHHcCCcEEEecCCCCCccccCCHHHHHhhccCCCEEEEEcC
Confidence 334444444 4688899999987742 22344566677775 34444443321 11111111235789999997
Q ss_pred CCC-chhHHHhhhcCCCceeeccCCC
Q 021262 132 RTD-HQPIKEAALGNIPTIAFCDTDS 156 (315)
Q Consensus 132 ~~d-~qaI~EAs~lnIPtIAL~DTds 156 (315)
... +..+.++...++.+| ++|-..
T Consensus 138 G~~s~~~i~~a~~~g~~VI-ViDHH~ 162 (666)
T 2zxr_A 138 GITNHAELRELLENGVEVI-VTDHHT 162 (666)
T ss_dssp C--------------CEEE-EECCCC
T ss_pred CchhhhhHHHHHhCCCCEE-EECCcC
Confidence 543 445666766787655 556544
No 86
>2f9f_A First mannosyl transferase (WBAZ-1); alpha-beta protein, structural genomics, PSI, protein struct initiative; 1.80A {Archaeoglobus fulgidus} SCOP: c.87.1.8
Probab=34.66 E-value=27 Score=28.24 Aligned_cols=75 Identities=15% Similarity=0.153 Sum_probs=40.3
Q ss_pred CCCcEEEEccCchhHHHHHHHHH--HhCCccccCCccCCccCcc-ccccccCCceEEEeCCCC-CchhHHHhhhcCCCce
Q 021262 74 NPGDIIVQSARPYGQRAVLKFAK--YTHAHAIAGRHTPGTFTNQ-MQTSFNEPRLLILTDPRT-DHQPIKEAALGNIPTI 149 (315)
Q Consensus 74 n~~~IlfVstr~~~q~aV~kfA~--~tga~~i~grw~pGtLTN~-~~~~f~eP~lLIV~DP~~-d~qaI~EAs~lnIPtI 149 (315)
..-++++++..+...+ ++++++ ..|..- +-+|+ |.+.+. ....++.-|++|+..... -...+.||...|+|+|
T Consensus 49 ~~~~l~i~G~~~~~~~-l~~~~~~~~~~l~~-~v~~~-g~~~~~e~~~~~~~adi~v~ps~~e~~~~~~~Eama~G~PvI 125 (177)
T 2f9f_A 49 QDEKLYIVGWFSKGDH-AERYARKIMKIAPD-NVKFL-GSVSEEELIDLYSRCKGLLCTAKDEDFGLTPIEAMASGKPVI 125 (177)
T ss_dssp TTSCEEEEBCCCTTST-HHHHHHHHHHHSCT-TEEEE-ESCCHHHHHHHHHHCSEEEECCSSCCSCHHHHHHHHTTCCEE
T ss_pred CCcEEEEEecCccHHH-HHHHHHhhhcccCC-cEEEe-CCCCHHHHHHHHHhCCEEEeCCCcCCCChHHHHHHHcCCcEE
Confidence 3457888887654332 334444 222110 01232 444432 122346667777643222 2457899999999999
Q ss_pred ee
Q 021262 150 AF 151 (315)
Q Consensus 150 AL 151 (315)
+.
T Consensus 126 ~~ 127 (177)
T 2f9f_A 126 AV 127 (177)
T ss_dssp EE
T ss_pred Ee
Confidence 85
No 87
>1jdq_A TM006 protein, hypothetical protein TM0983; structural genomics; NMR {Thermotoga maritima} SCOP: d.68.3.3
Probab=34.11 E-value=52 Score=25.50 Aligned_cols=47 Identities=11% Similarity=0.120 Sum_probs=31.1
Q ss_pred HHHHHHhhCCCcEEEEccCchhHHHHHHHHHHhCCccccCCcc-CCcc
Q 021262 66 ARVIVAIENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHT-PGTF 112 (315)
Q Consensus 66 a~~I~~I~n~~~IlfVstr~~~q~aV~kfA~~tga~~i~grw~-pGtL 112 (315)
.+.|..++.+..+.++.+.+...+-|.+||+..|-.++...-. +|.|
T Consensus 44 kkaL~~l~~Ge~L~Vl~dd~~a~~dI~~~~~~~G~~v~~~e~~~~g~~ 91 (98)
T 1jdq_A 44 KRALQNMKPGEILEVWIDYPMSKERIPETVKKLGHEVLEIEEVGPSEW 91 (98)
T ss_dssp HHHHHTCCTTCEEEEEESSCTHHHHHHHHHHHSSCCEEEEEECSSSCE
T ss_pred HHHHHhCCCCCEEEEEECCccHHHHHHHHHHHCCCEEEEEEEecCCEE
Confidence 3444455444455667888888888999999999877554333 3443
No 88
>3l6u_A ABC-type sugar transport system periplasmic compo; structural genomics, nysgrc, target 11006S, PSI-2, protein S initiative; 1.90A {Exiguobacterium sibiricum}
Probab=34.02 E-value=95 Score=26.45 Aligned_cols=59 Identities=19% Similarity=0.062 Sum_probs=36.0
Q ss_pred cCCceEEEeCCCCCc--hhHHHhhhcCCCceeeccCCCCC-CcceEEecCCCCCcchHHHHHHHHH
Q 021262 121 NEPRLLILTDPRTDH--QPIKEAALGNIPTIAFCDTDSPM-RYVDIGIPANNKGKHSIGCLFWLLA 183 (315)
Q Consensus 121 ~eP~lLIV~DP~~d~--qaI~EAs~lnIPtIAL~DTds~~-~~VD~pIP~Nnds~~SI~li~~lLa 183 (315)
+.+|.||+.....+. ..++++...+||+|.+ |++.+. ..+++.-.-| .....++...|.
T Consensus 63 ~~vdgiI~~~~~~~~~~~~~~~~~~~~iPvV~~-~~~~~~~~~~~~V~~D~---~~~g~~~~~~l~ 124 (293)
T 3l6u_A 63 LKVDAIFITTLDDVYIGSAIEEAKKAGIPVFAI-DRMIRSDAVVSSITSNN---QMIGEQLASYIK 124 (293)
T ss_dssp TTCSEEEEECSCTTTTHHHHHHHHHTTCCEEEE-SSCCCCTTCSEEEEECH---HHHHHHHHHHHH
T ss_pred cCCCEEEEecCChHHHHHHHHHHHHcCCCEEEe-cCCCCCCcceeEEecCH---HHHHHHHHHHHH
Confidence 467888887655554 6788898999999887 444433 3455554333 334444443333
No 89
>3k9c_A Transcriptional regulator, LACI family protein; PSI-II, 11026W, structural genomics, PR structure initiative; 2.14A {Rhodococcus jostii}
Probab=33.89 E-value=68 Score=27.70 Aligned_cols=44 Identities=18% Similarity=0.131 Sum_probs=30.2
Q ss_pred cCCceEEEeCCCCCchhHHHhhhcCCCceeeccCCCCCCcceEEec
Q 021262 121 NEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIP 166 (315)
Q Consensus 121 ~eP~lLIV~DP~~d~qaI~EAs~lnIPtIAL~DTds~~~~VD~pIP 166 (315)
+..|.||+.....+...+++... +||+|.+ |.+.+...+++...
T Consensus 65 ~~vdgiIi~~~~~~~~~~~~~~~-~iPvV~i-~~~~~~~~~~~V~~ 108 (289)
T 3k9c_A 65 ERCEAAILLGTRFDTDELGALAD-RVPALVV-ARASGLPGVGAVRG 108 (289)
T ss_dssp TTEEEEEEETCCCCHHHHHHHHT-TSCEEEE-SSCCSSTTSEEEEE
T ss_pred CCCCEEEEECCCCCHHHHHHHHc-CCCEEEE-cCCCCCCCCCEEEe
Confidence 46788998877777777877777 9999966 55444334555443
No 90
>3qhp_A Type 1 capsular polysaccharide biosynthesis prote (CAPJ); rossmann fold, glycosyltransferase, transferase; 1.50A {Helicobacter pylori}
Probab=33.72 E-value=85 Score=24.35 Aligned_cols=88 Identities=14% Similarity=0.079 Sum_probs=50.8
Q ss_pred HHHHHHHHHHHHHhhCCCcEEEEccCchhHHHHHHHHHHhCCccccCCccCCccCcc-ccccccCCceEEEeCCCCC-ch
Q 021262 59 WEKLQMAARVIVAIENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQ-MQTSFNEPRLLILTDPRTD-HQ 136 (315)
Q Consensus 59 ~ekL~~Aa~~I~~I~n~~~IlfVstr~~~q~aV~kfA~~tga~~i~grw~pGtLTN~-~~~~f~eP~lLIV~DP~~d-~q 136 (315)
.+.|..|++.+.. ...-++++++..+.. ..+++.++..|. +-++ |.+.+. ...-++.-|++|+..-... ..
T Consensus 17 ~~~li~a~~~l~~-~~~~~l~i~G~g~~~-~~~~~~~~~~~~---~v~~--g~~~~~~~~~~~~~adv~v~ps~~e~~~~ 89 (166)
T 3qhp_A 17 QSVLIKAVALSKY-KQDIVLLLKGKGPDE-KKIKLLAQKLGV---KAEF--GFVNSNELLEILKTCTLYVHAANVESEAI 89 (166)
T ss_dssp HHHHHHHHHTCTT-GGGEEEEEECCSTTH-HHHHHHHHHHTC---EEEC--CCCCHHHHHHHHTTCSEEEECCCSCCCCH
T ss_pred HHHHHHHHHHhcc-CCCeEEEEEeCCccH-HHHHHHHHHcCC---eEEE--eecCHHHHHHHHHhCCEEEECCcccCccH
Confidence 3444444444311 123456677766543 456777777775 2233 555432 2233567788777553222 45
Q ss_pred hHHHhhhcCC-Cceeecc
Q 021262 137 PIKEAALGNI-PTIAFCD 153 (315)
Q Consensus 137 aI~EAs~lnI-PtIAL~D 153 (315)
.+.||...|+ |+|+-.+
T Consensus 90 ~~~Eama~G~vPvi~~~~ 107 (166)
T 3qhp_A 90 ACLEAISVGIVPVIANSP 107 (166)
T ss_dssp HHHHHHHTTCCEEEECCT
T ss_pred HHHHHHhcCCCcEEeeCC
Confidence 7899999997 9999433
No 91
>3e3m_A Transcriptional regulator, LACI family; structural genomics, DNA-binding, plasmid, transcription regulation, PSI-2; 1.60A {Silicibacter pomeroyi}
Probab=33.31 E-value=82 Score=28.22 Aligned_cols=36 Identities=17% Similarity=0.337 Sum_probs=28.8
Q ss_pred cCCceEEEeCCCCCchhHHHhhhcCCCceeeccCCC
Q 021262 121 NEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDS 156 (315)
Q Consensus 121 ~eP~lLIV~DP~~d~qaI~EAs~lnIPtIAL~DTds 156 (315)
+..|-||+.....+...+.++...+||+|.+-+...
T Consensus 125 ~~vdGiI~~~~~~~~~~~~~l~~~~iPvV~i~~~~~ 160 (355)
T 3e3m_A 125 RRPEAMVLSYDGHTEQTIRLLQRASIPIVEIWEKPA 160 (355)
T ss_dssp TCCSEEEEECSCCCHHHHHHHHHCCSCEEEESSCCS
T ss_pred CCCCEEEEeCCCCCHHHHHHHHhCCCCEEEECCccC
Confidence 578999998877677778888899999999855443
No 92
>4gud_A Imidazole glycerol phosphate synthase subunit His; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: MSE 1PE; 1.91A {Vibrio cholerae}
Probab=32.42 E-value=56 Score=27.52 Aligned_cols=68 Identities=10% Similarity=0.040 Sum_probs=35.5
Q ss_pred cEEEEccCchhHHHHHHHHHHhCCccccCCccCCccCccccccccCCceEEEeCCCCC---------chhHHHhhhcCCC
Q 021262 77 DIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTD---------HQPIKEAALGNIP 147 (315)
Q Consensus 77 ~IlfVstr~~~q~aV~kfA~~tga~~i~grw~pGtLTN~~~~~f~eP~lLIV~DP~~d---------~qaI~EAs~lnIP 147 (315)
+|++|...-..-+.|.+.-++.|+..+-- .|.. .+...|.||+..+..- ...++++...++|
T Consensus 4 ~I~iiD~g~~n~~si~~al~~~G~~~~v~-------~~~~--~l~~~D~lilPG~g~~~~~~~~~~~~~~i~~~~~~~~P 74 (211)
T 4gud_A 4 NVVIIDTGCANISSVKFAIERLGYAVTIS-------RDPQ--VVLAADKLFLPGVGTASEAMKNLTERDLIELVKRVEKP 74 (211)
T ss_dssp CEEEECCCCTTHHHHHHHHHHTTCCEEEE-------CCHH--HHHHCSEEEECCCSCHHHHHHHHHHTTCHHHHHHCCSC
T ss_pred EEEEEECCCChHHHHHHHHHHCCCEEEEE-------CCHH--HHhCCCEEEECCCCCHHHHHHHHHhcChHHHHHHcCCC
Confidence 46666433222234555555666654321 1111 1234577777554321 1235667778999
Q ss_pred ceeecc
Q 021262 148 TIAFCD 153 (315)
Q Consensus 148 tIAL~D 153 (315)
+.++|-
T Consensus 75 vlGICl 80 (211)
T 4gud_A 75 LLGICL 80 (211)
T ss_dssp EEEETH
T ss_pred EEEEch
Confidence 999984
No 93
>3fro_A GLGA glycogen synthase; glycosyltransferase family, UDP/ADP-glucose-glycogen synthas rossman folds, transferase; HET: NHF; 2.50A {Pyrococcus abyssi} SCOP: c.87.1.8 PDB: 2bis_A* 3l01_A*
Probab=31.83 E-value=65 Score=28.93 Aligned_cols=89 Identities=9% Similarity=-0.012 Sum_probs=52.6
Q ss_pred HHHHHHHHHHHHHhh--CCCcEEEEccCch-hHHHHHHHHHHhCCccccCCccCCccCcc-ccccccCCceEEEeCCCCC
Q 021262 59 WEKLQMAARVIVAIE--NPGDIIVQSARPY-GQRAVLKFAKYTHAHAIAGRHTPGTFTNQ-MQTSFNEPRLLILTDPRTD 134 (315)
Q Consensus 59 ~ekL~~Aa~~I~~I~--n~~~IlfVstr~~-~q~aV~kfA~~tga~~i~grw~pGtLTN~-~~~~f~eP~lLIV~DP~~d 134 (315)
.+.|..|+..+..-. .+-+++++|..+. ....+++.++..+ ...+..|.+... ...-+..-|++|+..-.+.
T Consensus 267 ~~~li~a~~~l~~~~~~~~~~l~i~G~g~~~~~~~l~~~~~~~~----~~~~~~g~~~~~~~~~~~~~adv~v~ps~~e~ 342 (439)
T 3fro_A 267 VDVLLKAIEILSSKKEFQEMRFIIIGKGDPELEGWARSLEEKHG----NVKVITEMLSREFVRELYGSVDFVIIPSYFEP 342 (439)
T ss_dssp HHHHHHHHHHHHTSGGGGGEEEEEECCCCHHHHHHHHHHHHHCT----TEEEECSCCCHHHHHHHHTTCSEEEECBSCCS
T ss_pred HHHHHHHHHHHHhcccCCCeEEEEEcCCChhHHHHHHHHHhhcC----CEEEEcCCCCHHHHHHHHHHCCEEEeCCCCCC
Confidence 344555555544321 3456677776653 2355667777776 223345644443 2233566787776653322
Q ss_pred -chhHHHhhhcCCCceee
Q 021262 135 -HQPIKEAALGNIPTIAF 151 (315)
Q Consensus 135 -~qaI~EAs~lnIPtIAL 151 (315)
...+.||..+|+|+|+-
T Consensus 343 ~~~~~~EAma~G~Pvi~s 360 (439)
T 3fro_A 343 FGLVALEAMCLGAIPIAS 360 (439)
T ss_dssp SCHHHHHHHHTTCEEEEE
T ss_pred ccHHHHHHHHCCCCeEEc
Confidence 46789999999999985
No 94
>2gek_A Phosphatidylinositol mannosyltransferase (PIMA); GT4 glycosyltransferase, rossmann fold, complex; HET: GDP; 2.40A {Mycobacterium smegmatis} PDB: 2gej_A*
Probab=30.22 E-value=55 Score=29.20 Aligned_cols=88 Identities=14% Similarity=0.060 Sum_probs=48.2
Q ss_pred HHHHHHHHHHHHHHhhCCCcEEEEccCchhHHHHHHHHHHhCCccccCCccCCccCccc-cccccCCceEEEeCCCCC--
Q 021262 58 TWEKLQMAARVIVAIENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQM-QTSFNEPRLLILTDPRTD-- 134 (315)
Q Consensus 58 T~ekL~~Aa~~I~~I~n~~~IlfVstr~~~q~aV~kfA~~tga~~i~grw~pGtLTN~~-~~~f~eP~lLIV~DP~~d-- 134 (315)
-...|..|+..+..-...-++++++..+. ..+++.++.. ...| +| -|.+.+.. ...++.-|++|+..-+.+
T Consensus 223 g~~~li~a~~~l~~~~~~~~l~i~G~~~~--~~l~~~~~~~-~~~v--~~-~g~~~~~~~~~~~~~adv~v~ps~~~e~~ 296 (406)
T 2gek_A 223 GMAVLLAALPKLVARFPDVEILIVGRGDE--DELREQAGDL-AGHL--RF-LGQVDDATKASAMRSADVYCAPHLGGESF 296 (406)
T ss_dssp CHHHHHHHHHHHHTTSTTCEEEEESCSCH--HHHHHHTGGG-GGGE--EE-CCSCCHHHHHHHHHHSSEEEECCCSCCSS
T ss_pred CHHHHHHHHHHHHHHCCCeEEEEEcCCcH--HHHHHHHHhc-cCcE--EE-EecCCHHHHHHHHHHCCEEEecCCCCCCC
Confidence 34445455444433223456777887766 3444444433 1111 23 34444431 223566788777642223
Q ss_pred chhHHHhhhcCCCceee
Q 021262 135 HQPIKEAALGNIPTIAF 151 (315)
Q Consensus 135 ~qaI~EAs~lnIPtIAL 151 (315)
...+-||..+|+|+|+-
T Consensus 297 ~~~~~Ea~a~G~PvI~~ 313 (406)
T 2gek_A 297 GIVLVEAMAAGTAVVAS 313 (406)
T ss_dssp CHHHHHHHHHTCEEEEC
T ss_pred chHHHHHHHcCCCEEEe
Confidence 45789999999999985
No 95
>3md9_A Hemin-binding periplasmic protein HMUT; transport protein, alpha beta protein, rigid helical backbon substrate-free, heme transport; 1.50A {Yersinia pestis} PDB: 3nu1_A*
Probab=29.92 E-value=35 Score=29.43 Aligned_cols=32 Identities=9% Similarity=0.245 Sum_probs=24.3
Q ss_pred ccCCceEEEeCCCCCchhHHHhhhcCCCceee
Q 021262 120 FNEPRLLILTDPRTDHQPIKEAALGNIPTIAF 151 (315)
Q Consensus 120 f~eP~lLIV~DP~~d~qaI~EAs~lnIPtIAL 151 (315)
--.|||||..+-......+..-+..||||+.+
T Consensus 57 ~l~PDlIi~~~~~~~~~~~~~L~~~gipvv~~ 88 (255)
T 3md9_A 57 AMKPTMLLVSELAQPSLVLTQIASSGVNVVTV 88 (255)
T ss_dssp TTCCSEEEEETTCSCHHHHHHHHHTTCEEEEE
T ss_pred ccCCCEEEEcCCcCchhHHHHHHHcCCcEEEe
Confidence 36999999887544345667777889999977
No 96
>3o74_A Fructose transport system repressor FRUR; dual transcriptional regulator, DNA, transcription; 2.00A {Pseudomonas putida} PDB: 3o75_A*
Probab=29.76 E-value=62 Score=27.25 Aligned_cols=44 Identities=16% Similarity=0.097 Sum_probs=29.2
Q ss_pred cCCceEEEeCCC-CCchhHHHhhhcCCCceeeccCCCCCCcceEEe
Q 021262 121 NEPRLLILTDPR-TDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGI 165 (315)
Q Consensus 121 ~eP~lLIV~DP~-~d~qaI~EAs~lnIPtIAL~DTds~~~~VD~pI 165 (315)
+.+|.||+.... .+...+.++...|||+|.+ |++.+...+++..
T Consensus 57 ~~vdgiIi~~~~~~~~~~~~~~~~~~iPvV~~-~~~~~~~~~~~V~ 101 (272)
T 3o74_A 57 RRCDALFVASCLPPEDDSYRELQDKGLPVIAI-DRRLDPAHFCSVI 101 (272)
T ss_dssp TTCSEEEECCCCCSSCCHHHHHHHTTCCEEEE-SSCCCTTTCEEEE
T ss_pred cCCCEEEEecCccccHHHHHHHHHcCCCEEEE-ccCCCccccCEEE
Confidence 456888877554 3466788888899999866 5544433455544
No 97
>3jy6_A Transcriptional regulator, LACI family; NYSGXRC, PSI-II, protein S initiative, structural genomics; 1.97A {Lactobacillus brevis}
Probab=29.31 E-value=62 Score=27.59 Aligned_cols=43 Identities=16% Similarity=0.109 Sum_probs=29.8
Q ss_pred cCCceEEEeCCCCCchhHHHhhhcCCCceeeccCCCCCCcceEEe
Q 021262 121 NEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGI 165 (315)
Q Consensus 121 ~eP~lLIV~DP~~d~qaI~EAs~lnIPtIAL~DTds~~~~VD~pI 165 (315)
+.+|.||+..... ...++++...|||+|.+ |.+.+...+++..
T Consensus 62 ~~vdgiIi~~~~~-~~~~~~l~~~~iPvV~i-~~~~~~~~~~~V~ 104 (276)
T 3jy6_A 62 RGFDGLILQSFSN-PQTVQEILHQQMPVVSV-DREMDACPWPQVV 104 (276)
T ss_dssp TTCSEEEEESSCC-HHHHHHHHTTSSCEEEE-SCCCTTCSSCEEE
T ss_pred CCCCEEEEecCCc-HHHHHHHHHCCCCEEEE-ecccCCCCCCEEE
Confidence 4678888887666 67788888899999977 4444333345543
No 98
>2iuy_A Avigt4, glycosyltransferase; antibiotics, family GT-4, avilamycin A; HET: MES; 2.1A {Streptomyces viridochromogenes} PDB: 2iv3_A*
Probab=28.61 E-value=1e+02 Score=26.95 Aligned_cols=85 Identities=8% Similarity=0.052 Sum_probs=50.4
Q ss_pred HHHHHHHHHHHHHHHhhCCCcEEEEccCchhHHHHHHHHHHhCCccccCCccCCccCccc-cccccCCceEEEeCC----
Q 021262 57 KTWEKLQMAARVIVAIENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQM-QTSFNEPRLLILTDP---- 131 (315)
Q Consensus 57 kT~ekL~~Aa~~I~~I~n~~~IlfVstr~~~q~aV~kfA~~tga~~i~grw~pGtLTN~~-~~~f~eP~lLIV~DP---- 131 (315)
|=...|..|++.+ +-+++++|..+.. ..++++++..|.. | +| -|.+.+.. ...++.-|++|+...
T Consensus 175 Kg~~~li~a~~~~-----~~~l~i~G~g~~~-~~l~~~~~~~~~~-v--~~-~g~~~~~~l~~~~~~adv~v~ps~~~~~ 244 (342)
T 2iuy_A 175 KGALEAAAFAHAC-----GRRLVLAGPAWEP-EYFDEITRRYGST-V--EP-IGEVGGERRLDLLASAHAVLAMSQAVTG 244 (342)
T ss_dssp GTHHHHHHHHHHH-----TCCEEEESCCCCH-HHHHHHHHHHTTT-E--EE-CCCCCHHHHHHHHHHCSEEEECCCCCCC
T ss_pred cCHHHHHHHHHhc-----CcEEEEEeCcccH-HHHHHHHHHhCCC-E--EE-eccCCHHHHHHHHHhCCEEEECCccccc
Confidence 4444555555443 4668888876543 3455667666621 1 23 35555532 223456677776654
Q ss_pred -----CCC--chhHHHhhhcCCCceee
Q 021262 132 -----RTD--HQPIKEAALGNIPTIAF 151 (315)
Q Consensus 132 -----~~d--~qaI~EAs~lnIPtIAL 151 (315)
..+ ...+.||...|+|+|+-
T Consensus 245 ~~~~~~~E~~~~~~~EAma~G~PvI~s 271 (342)
T 2iuy_A 245 PWGGIWCEPGATVVSEAAVSGTPVVGT 271 (342)
T ss_dssp TTCSCCCCCCCHHHHHHHHTTCCEEEC
T ss_pred ccccccccCccHHHHHHHhcCCCEEEc
Confidence 022 46789999999999985
No 99
>3tbf_A Glucosamine--fructose-6-phosphate aminotransferas [isomerizing]; structural genomics; 2.28A {Francisella tularensis subsp}
Probab=28.56 E-value=3.6e+02 Score=25.07 Aligned_cols=116 Identities=16% Similarity=0.182 Sum_probs=70.7
Q ss_pred hCCCcEEEEccCch---hHHHHHHHHHHhCC---ccccCCccCCccCccccccccCCceEEEeCCCCC---c--hhHHHh
Q 021262 73 ENPGDIIVQSARPY---GQRAVLKFAKYTHA---HAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTD---H--QPIKEA 141 (315)
Q Consensus 73 ~n~~~IlfVstr~~---~q~aV~kfA~~tga---~~i~grw~pGtLTN~~~~~f~eP~lLIV~DP~~d---~--qaI~EA 141 (315)
.+..+++|+|+... ..+.-+|+-+-+.. .|-.+-|..|.+.=-. . ..| +|++.+... + ..++|.
T Consensus 225 ~~~~~~~~lGrG~~~~~A~E~ALKlkE~s~i~ae~~~a~E~~HGP~alid-~--~~p--vi~~~~~d~~~~k~~~~~~e~ 299 (372)
T 3tbf_A 225 SDKEHTIFLGRGLYYPIAIEGALKLKEISYIHAEAYPSGELKHGPLALVD-K--NMP--IVAVVPNDELLDKTLSNLQEV 299 (372)
T ss_dssp TTCCEEEEEECTTHHHHHHHHHHHHHHHHCCEEEEEEGGGTTTTTTTTCC-T--TCE--EEEEECSSTTHHHHHHHHHHH
T ss_pred hccCCEEEEecCcCHHHHHHHHHHHHHHhCcCcceeeHHHhcCccHhhcC-C--CCe--EEEEecCCchHHHHHHHHHHH
Confidence 45678999988753 45556677777653 3456777777643211 1 122 444433322 1 357888
Q ss_pred hhcCCCceeeccCCC-CC----CcceEEecCCCCCcchHH--HHHHHHHHHHHHhhcCC
Q 021262 142 ALGNIPTIAFCDTDS-PM----RYVDIGIPANNKGKHSIG--CLFWLLARMVLQMRGTI 193 (315)
Q Consensus 142 s~lnIPtIAL~DTds-~~----~~VD~pIP~Nnds~~SI~--li~~lLaraVl~~rg~i 193 (315)
...|-.+|+|+|.+. .. ....+.||..++-...+- +.+++|+..+-..||..
T Consensus 300 ~~rg~~vi~i~~~~~~~~~~~~~~~~i~~p~~~~~l~pl~~~i~~Qlla~~~A~~rG~d 358 (372)
T 3tbf_A 300 HARGGKLILFVDKAVKERVNFDNSIVLELDAGHDFSAPVVFTIPLQLLSYHVAIIKGTD 358 (372)
T ss_dssp HHTTCEEEEEEEGGGGGGCCCTTCEEEEECCCSTTHHHHHHHHHHHHHHHHHHHHHTCC
T ss_pred HHcCCeEEEEECCCcccccccccceEEECCCCchhHhHHHHHHHHHHHHHHHHHHcCcC
Confidence 888999999988654 21 223366785544444333 34788998888888874
No 100
>3egc_A Putative ribose operon repressor; structural genomics, unknown function, DNA-binding, transcri transcription regulation, PSI-2; 2.35A {Burkholderia thailandensis}
Probab=28.35 E-value=75 Score=27.24 Aligned_cols=92 Identities=10% Similarity=0.061 Sum_probs=41.0
Q ss_pred HHHHHHHHHhhCCCcEEEEccCch------hHHHHHHHHHHhCCccccCCccCCccCcccc--------ccccCCceEEE
Q 021262 63 QMAARVIVAIENPGDIIVQSARPY------GQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQ--------TSFNEPRLLIL 128 (315)
Q Consensus 63 ~~Aa~~I~~I~n~~~IlfVstr~~------~q~aV~kfA~~tga~~i~grw~pGtLTN~~~--------~~f~eP~lLIV 128 (315)
+.|++.+... ..++|.|++.... -.+..++..+..|..+.......|.++.... .....|+.||+
T Consensus 114 ~~a~~~L~~~-G~~~i~~i~~~~~~~~~~~R~~gf~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~~ 192 (291)
T 3egc_A 114 RTAVEYLIAR-GHTRIGAIVGSAGLMTSRERLKGFRAAMSAAGLPVRQEWIAAGGVRADNGRDGAIKVLTGADRPTALLT 192 (291)
T ss_dssp HHHHHHHHHT-TCCSEEEECSCTTSHHHHHHHHHHHHHHHHTTCCCCGGGEEC------CCHHHHHHHHTC-CCCSEEEE
T ss_pred HHHHHHHHHc-CCCEEEEEeCCCCCcCHHHHHHHHHHHHHHcCCCCCHHHeEeCCCChhHHHHHHHHHHhCCCCCcEEEE
Confidence 3445554443 4467988866532 1233444555555443221122233332111 01256888887
Q ss_pred eCCCCCchhHHHhhhcCC------CceeeccCC
Q 021262 129 TDPRTDHQPIKEAALGNI------PTIAFCDTD 155 (315)
Q Consensus 129 ~DP~~d~qaI~EAs~lnI------PtIAL~DTd 155 (315)
.+-..-.-+++.+...|+ -+|++-|+.
T Consensus 193 ~~d~~a~g~~~al~~~g~~vP~di~vvg~d~~~ 225 (291)
T 3egc_A 193 SSHRITEGAMQALNVLGLRYGPDVEIVSFDNLP 225 (291)
T ss_dssp SSHHHHHHHHHHHHHHTCCBTTTBEEEEESCCG
T ss_pred CCcHHHHHHHHHHHHcCCCCCCceEEEEecCch
Confidence 663322223333333333 378876664
No 101
>3ksm_A ABC-type sugar transport system, periplasmic COMP; periplasmic component, PSI- 11023L, structural genomics, protein structure initiative; HET: BDR; 1.90A {Hahella chejuensis}
Probab=28.21 E-value=1.1e+02 Score=25.61 Aligned_cols=34 Identities=26% Similarity=0.396 Sum_probs=25.2
Q ss_pred CceEEEeCC--CCCchhHHHhhhcCCCceeeccCCCC
Q 021262 123 PRLLILTDP--RTDHQPIKEAALGNIPTIAFCDTDSP 157 (315)
Q Consensus 123 P~lLIV~DP--~~d~qaI~EAs~lnIPtIAL~DTds~ 157 (315)
+|.||+... ......++++...+||+|.+ |++.+
T Consensus 60 vdgii~~~~~~~~~~~~~~~~~~~~ipvV~~-~~~~~ 95 (276)
T 3ksm_A 60 PDALILAPNSAEDLTPSVAQYRARNIPVLVV-DSDLA 95 (276)
T ss_dssp CSEEEECCSSTTTTHHHHHHHHHTTCCEEEE-SSCCS
T ss_pred CCEEEEeCCCHHHHHHHHHHHHHCCCcEEEE-ecCCC
Confidence 788888763 34567888999999999987 44443
No 102
>3clk_A Transcription regulator; 11017J, PSI-II, NYSGXRC, dimer, structural genomics, protein structure initiative; 2.08A {Lactobacillus plantarum WCFS1}
Probab=28.07 E-value=60 Score=27.92 Aligned_cols=35 Identities=6% Similarity=0.020 Sum_probs=20.9
Q ss_pred cCCceEEEeCCCCCchhHHHhhhcCCCceeeccCCC
Q 021262 121 NEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDS 156 (315)
Q Consensus 121 ~eP~lLIV~DP~~d~qaI~EAs~lnIPtIAL~DTds 156 (315)
+..|.||+.....+...++++...+||+|.+ |+..
T Consensus 64 ~~vdgiI~~~~~~~~~~~~~l~~~~iPvV~~-~~~~ 98 (290)
T 3clk_A 64 RPVMGILLLSIALTDDNLQLLQSSDVPYCFL-SMGF 98 (290)
T ss_dssp SCCSEEEEESCC----CHHHHHCC--CEEEE-SCC-
T ss_pred cCCCEEEEecccCCHHHHHHHHhCCCCEEEE-cCCC
Confidence 5678888876654446678888889999877 4443
No 103
>3c3k_A Alanine racemase; structural genomics, protein structure initiative, NEW YORK research center for structural genomics, nysgxrc; 1.99A {Actinobacillus succinogenes}
Probab=28.04 E-value=71 Score=27.44 Aligned_cols=42 Identities=14% Similarity=0.177 Sum_probs=26.4
Q ss_pred cCCceEEEeCCCCCchhHHHhhhcCCCceeeccCCCCCCcceEE
Q 021262 121 NEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIG 164 (315)
Q Consensus 121 ~eP~lLIV~DP~~d~qaI~EAs~lnIPtIAL~DTds~~~~VD~p 164 (315)
+.+|.||+.....+...+.++. .+||+|.+ |+..+-..+++.
T Consensus 63 ~~vdgiI~~~~~~~~~~~~~l~-~~iPvV~~-~~~~~~~~~~~V 104 (285)
T 3c3k_A 63 KMVDGVITMDALSELPELQNII-GAFPWVQC-AEYDPLSTVSSV 104 (285)
T ss_dssp TCCSEEEECCCGGGHHHHHHHH-TTSSEEEE-SSCCTTSSSCEE
T ss_pred CCCCEEEEeCCCCChHHHHHHh-cCCCEEEE-ccccCCCCCCEE
Confidence 4578888876544445677777 89999987 444332234443
No 104
>2pln_A HP1043, response regulator; signaling protein; 1.80A {Helicobacter pylori} PDB: 2hqo_A
Probab=27.92 E-value=60 Score=24.27 Aligned_cols=74 Identities=7% Similarity=-0.034 Sum_probs=38.0
Q ss_pred CCCcEEEEccCchhHHHHHHHHHHhCCccccCCccCCccCccccc----cccCCceEEEeCCCCCchhHHHhhh-c-CCC
Q 021262 74 NPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQT----SFNEPRLLILTDPRTDHQPIKEAAL-G-NIP 147 (315)
Q Consensus 74 n~~~IlfVstr~~~q~aV~kfA~~tga~~i~grw~pGtLTN~~~~----~f~eP~lLIV~DP~~d~qaI~EAs~-l-nIP 147 (315)
++.+||+|.........+.+..+..|.... .+++.... .-..|++|| +........+++... . ++|
T Consensus 17 ~~~~ilivdd~~~~~~~l~~~L~~~g~~v~-------~~~~~~~al~~l~~~~~dlvi-~~~~~g~~~~~~l~~~~~~~~ 88 (137)
T 2pln_A 17 GSMRVLLIEKNSVLGGEIEKGLNVKGFMAD-------VTESLEDGEYLMDIRNYDLVM-VSDKNALSFVSRIKEKHSSIV 88 (137)
T ss_dssp TCSEEEEECSCHHHHHHHHHHHHHTTCEEE-------EESCHHHHHHHHHHSCCSEEE-ECSTTHHHHHHHHHHHSTTSE
T ss_pred CCCeEEEEeCCHHHHHHHHHHHHHcCcEEE-------EeCCHHHHHHHHHcCCCCEEE-EcCccHHHHHHHHHhcCCCcc
Confidence 345677777776666666665555443211 11221110 114688888 332222334444433 3 788
Q ss_pred ceeeccCC
Q 021262 148 TIAFCDTD 155 (315)
Q Consensus 148 tIAL~DTd 155 (315)
+|.+.+.+
T Consensus 89 ii~ls~~~ 96 (137)
T 2pln_A 89 VLVSSDNP 96 (137)
T ss_dssp EEEEESSC
T ss_pred EEEEeCCC
Confidence 88887653
No 105
>3huu_A Transcription regulator like protein; PSI-II, NYSGXRC, LAC I, STR genomics, protein structure initiative; 1.95A {Staphylococcus haemolyticus}
Probab=27.85 E-value=91 Score=27.03 Aligned_cols=44 Identities=9% Similarity=-0.121 Sum_probs=31.5
Q ss_pred cCCceEEEeCCCCCchhHHHhhhcCCCceeeccCCCCCCcceEEe
Q 021262 121 NEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGI 165 (315)
Q Consensus 121 ~eP~lLIV~DP~~d~qaI~EAs~lnIPtIAL~DTds~~~~VD~pI 165 (315)
+..|-||+.....+...+.++...+||+|.+ |++.+...+++..
T Consensus 82 ~~vdgiIi~~~~~~~~~~~~l~~~~iPvV~i-~~~~~~~~~~~V~ 125 (305)
T 3huu_A 82 KSVDGFILLYSLKDDPIEHLLNEFKVPYLIV-GKSLNYENIIHID 125 (305)
T ss_dssp TCCSEEEESSCBTTCHHHHHHHHTTCCEEEE-SCCCSSTTCCEEE
T ss_pred CCCCEEEEeCCcCCcHHHHHHHHcCCCEEEE-CCCCcccCCcEEE
Confidence 5678888887666667888888999999876 5544443455554
No 106
>3gbv_A Putative LACI-family transcriptional regulator; NYSGXRC, PSI-II, 11231J, structur genomics, protein structure initiative; 2.20A {Bacteroides fragilis}
Probab=27.68 E-value=92 Score=26.55 Aligned_cols=45 Identities=11% Similarity=0.010 Sum_probs=29.9
Q ss_pred cCCceEEEeCCCCC--chhHHHhhhcCCCceeeccCCCCC-CcceEEec
Q 021262 121 NEPRLLILTDPRTD--HQPIKEAALGNIPTIAFCDTDSPM-RYVDIGIP 166 (315)
Q Consensus 121 ~eP~lLIV~DP~~d--~qaI~EAs~lnIPtIAL~DTds~~-~~VD~pIP 166 (315)
+.+|.||+.....+ ...++++...+||+|.+ |++.+- ..+++.-.
T Consensus 68 ~~vdgiii~~~~~~~~~~~~~~~~~~~iPvV~~-~~~~~~~~~~~~V~~ 115 (304)
T 3gbv_A 68 EQPDGVMFAPTVPQYTKGFTDALNELGIPYIYI-DSQIKDAPPLAFFGQ 115 (304)
T ss_dssp TCCSEEEECCSSGGGTHHHHHHHHHHTCCEEEE-SSCCTTSCCSEEEEC
T ss_pred cCCCEEEECCCChHHHHHHHHHHHHCCCeEEEE-eCCCCCCCceEEEec
Confidence 56788888876543 45688888899999876 444332 23555543
No 107
>3qk7_A Transcriptional regulators; structural genomics, NEW YORK structural genomix research CO NYSGXRC, PSI-2, protein structur initiative; 2.70A {Yersinia pestis}
Probab=27.21 E-value=68 Score=27.79 Aligned_cols=59 Identities=12% Similarity=0.047 Sum_probs=32.5
Q ss_pred cCCceEEEeCCCCCchhHHHhhhcCC--C----ceeeccCC----CCCCcceEEecC-CCCCcchHHHHH
Q 021262 121 NEPRLLILTDPRTDHQPIKEAALGNI--P----TIAFCDTD----SPMRYVDIGIPA-NNKGKHSIGCLF 179 (315)
Q Consensus 121 ~eP~lLIV~DP~~d~qaI~EAs~lnI--P----tIAL~DTd----s~~~~VD~pIP~-Nnds~~SI~li~ 179 (315)
..|+.||+.+-..-.-+++.+...|+ | +|++-|+. ..+.+.++-.|. -.-+..++.+++
T Consensus 186 ~~~~ai~~~nd~~A~g~~~al~~~G~~vP~di~vig~D~~~~~~~~~p~lttv~~~~~~~~g~~av~~L~ 255 (294)
T 3qk7_A 186 VPPTAIITDCNMLGDGVASALDKAGLLGGEGISLIAYDGLPDDSLLDIAVTPIVQNTRTSVGKQIASMIC 255 (294)
T ss_dssp SCCSEEEESSHHHHHHHHHHHHHTTCSSTTSCEEEEETCSCTTCSCCSCCEEEECCCHHHHHHHHHHHHH
T ss_pred CCCcEEEECCHHHHHHHHHHHHHcCCCCCCceEEEeecCccHHhhcCCCceeEecCcHHHHHHHHHHHHH
Confidence 46888888763222334444444443 3 88887775 334455666555 344455555444
No 108
>2r7a_A Bacterial heme binding protein; periplasmic binding protein, heme transport, transport protein; HET: HEM; 2.05A {Shigella dysenteriae} PDB: 2rg7_A
Probab=27.20 E-value=41 Score=28.95 Aligned_cols=32 Identities=6% Similarity=0.063 Sum_probs=23.6
Q ss_pred ccCCceEEEeCCCCCchhHHHhhhcCCCceee
Q 021262 120 FNEPRLLILTDPRTDHQPIKEAALGNIPTIAF 151 (315)
Q Consensus 120 f~eP~lLIV~DP~~d~qaI~EAs~lnIPtIAL 151 (315)
--.|||||..+...+...+..-++++|||+.+
T Consensus 57 ~l~PDLIi~~~~~~~~~~~~~L~~~gipvv~~ 88 (256)
T 2r7a_A 57 SLRPDSVITWQDAGPQIVLDQLRAQKVNVVTL 88 (256)
T ss_dssp TTCCSEEEEETTCSCHHHHHHHHHTTCEEEEE
T ss_pred ccCCCEEEEcCCCCCHHHHHHHHHcCCcEEEe
Confidence 36899999876533445566667899999876
No 109
>2h3h_A Sugar ABC transporter, periplasmic sugar-binding protein; glucose binding protein, periplasmic binding protein, GBP; HET: BGC; 1.70A {Thermotoga maritima} PDB: 2qvc_A* 3c6q_B*
Probab=27.04 E-value=1.3e+02 Score=26.09 Aligned_cols=44 Identities=23% Similarity=0.164 Sum_probs=27.2
Q ss_pred cCCceEEEeCCCCCc--hhHHHhhhcCCCceeeccCCCCC-CcceEEe
Q 021262 121 NEPRLLILTDPRTDH--QPIKEAALGNIPTIAFCDTDSPM-RYVDIGI 165 (315)
Q Consensus 121 ~eP~lLIV~DP~~d~--qaI~EAs~lnIPtIAL~DTds~~-~~VD~pI 165 (315)
+.+|.||+.....+. ..++++...+||+|.+ |++.+. ..+++.-
T Consensus 56 ~~vdgiIi~~~~~~~~~~~~~~~~~~~iPvV~~-~~~~~~~~~~~~V~ 102 (313)
T 2h3h_A 56 EGVNGIAIAPSDPTAVIPTIKKALEMGIPVVTL-DTDSPDSGRYVYIG 102 (313)
T ss_dssp TTCSEEEECCSSTTTTHHHHHHHHHTTCCEEEE-SSCCTTSCCSCEEE
T ss_pred cCCCEEEEeCCChHHHHHHHHHHHHCCCeEEEe-CCCCCCcceeEEEC
Confidence 456777776543332 5678888899999976 444332 2345543
No 110
>3brs_A Periplasmic binding protein/LACI transcriptional; structural genomics, protein structure initiative; 2.00A {Clostridium phytofermentans}
Probab=26.76 E-value=92 Score=26.50 Aligned_cols=35 Identities=20% Similarity=0.353 Sum_probs=24.5
Q ss_pred cCCceEEEeCCCCCc--hhHHHhhhcCCCceeeccCCC
Q 021262 121 NEPRLLILTDPRTDH--QPIKEAALGNIPTIAFCDTDS 156 (315)
Q Consensus 121 ~eP~lLIV~DP~~d~--qaI~EAs~lnIPtIAL~DTds 156 (315)
+.+|.||+.....+. ..++++...+||+|.+ |+..
T Consensus 64 ~~vdgii~~~~~~~~~~~~~~~~~~~~iPvV~~-~~~~ 100 (289)
T 3brs_A 64 RKPDVILLAAADYEKTYDAAKEIKDAGIKLIVI-DSGM 100 (289)
T ss_dssp TCCSEEEECCSCTTTTHHHHTTTGGGTCEEEEE-SSCC
T ss_pred hCCCEEEEeCCChHHhHHHHHHHHHCCCcEEEE-CCCC
Confidence 457888887655443 5677888889999876 4433
No 111
>1o1y_A Conserved hypothetical protein TM1158; flavodoxin-like fold, structural genomics, joint center for structural genomics, JCSG; 1.70A {Thermotoga maritima} SCOP: c.23.16.1
Probab=26.33 E-value=1e+02 Score=26.93 Aligned_cols=75 Identities=13% Similarity=0.145 Sum_probs=42.3
Q ss_pred CCcEEEEccCch-hHHHHHHHHHHhCCccccCCccCCccCccccccccCCceEEEeC--CCC--C---------chhHHH
Q 021262 75 PGDIIVQSARPY-GQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTD--PRT--D---------HQPIKE 140 (315)
Q Consensus 75 ~~~IlfVstr~~-~q~aV~kfA~~tga~~i~grw~pGtLTN~~~~~f~eP~lLIV~D--P~~--d---------~qaI~E 140 (315)
.-+|+++-..+. ....+.+..+..|...+.-+...+ ......+..+|.||++. +.. + ...|++
T Consensus 12 ~~~~~~i~~~~~~~~~~i~~~l~~~G~~v~v~~~~~~---~~~~~~l~~~Dglil~GG~~~~~~~~~~~~l~~~~~~i~~ 88 (239)
T 1o1y_A 12 HVRVLAIRHVEIEDLGMMEDIFREKNWSFDYLDTPKG---EKLERPLEEYSLVVLLGGYMGAYEEEKYPFLKYEFQLIEE 88 (239)
T ss_dssp CCEEEEECSSTTSSCTHHHHHHHHTTCEEEEECGGGT---CCCSSCGGGCSEEEECCCSCCTTCTTTCTHHHHHHHHHHH
T ss_pred eeEEEEEECCCCCCchHHHHHHHhCCCcEEEeCCcCc---cccccchhcCCEEEECCCCccccCCccChhHHHHHHHHHH
Confidence 345777644332 334566666777765432122111 11112245679999987 221 1 346778
Q ss_pred hhhcCCCceeec
Q 021262 141 AALGNIPTIAFC 152 (315)
Q Consensus 141 As~lnIPtIAL~ 152 (315)
+...++|+.+||
T Consensus 89 ~~~~~~PiLGIC 100 (239)
T 1o1y_A 89 ILKKEIPFLGIC 100 (239)
T ss_dssp HHHHTCCEEEET
T ss_pred HHHCCCCEEEEc
Confidence 878899999997
No 112
>3g1w_A Sugar ABC transporter; sugar-binding protein, bacillus halod target 11229F, transport protein, structural genomics; 2.02A {Bacillus halodurans c-125}
Probab=26.18 E-value=1.1e+02 Score=26.39 Aligned_cols=44 Identities=18% Similarity=0.235 Sum_probs=29.2
Q ss_pred cCCceEEEeCCCCC--chhHHHhhhcCCCceeeccCCCCCC-cceEEe
Q 021262 121 NEPRLLILTDPRTD--HQPIKEAALGNIPTIAFCDTDSPMR-YVDIGI 165 (315)
Q Consensus 121 ~eP~lLIV~DP~~d--~qaI~EAs~lnIPtIAL~DTds~~~-~VD~pI 165 (315)
+.+|.||+.....+ ...++++...|||+|.+ |++.+.. .+++.-
T Consensus 60 ~~vdgiIi~~~~~~~~~~~~~~~~~~~iPvV~~-~~~~~~~~~~~~V~ 106 (305)
T 3g1w_A 60 KNPAGIAISAIDPVELTDTINKAVDAGIPIVLF-DSGAPDSHAHSFLG 106 (305)
T ss_dssp HCCSEEEECCSSTTTTHHHHHHHHHTTCCEEEE-SSCCTTSCCSCEEE
T ss_pred hCCCEEEEcCCCHHHHHHHHHHHHHCCCcEEEE-CCCCCCCceeEEEC
Confidence 46888888754333 56889999999999876 4444332 355544
No 113
>3o1i_D Periplasmic protein TORT; ligand free, two component sensor, periplasmic binding prote signaling protein; HET: PE4; 2.80A {Vibrio parahaemolyticus} PDB: 3o1h_B* 3o1j_C
Probab=25.93 E-value=61 Score=27.80 Aligned_cols=30 Identities=23% Similarity=0.281 Sum_probs=24.3
Q ss_pred cCCceEEEeCCCCC--chhHHHhhhcCCCceee
Q 021262 121 NEPRLLILTDPRTD--HQPIKEAALGNIPTIAF 151 (315)
Q Consensus 121 ~eP~lLIV~DP~~d--~qaI~EAs~lnIPtIAL 151 (315)
+.+|.||+.....+ ...++++. .+||+|.+
T Consensus 62 ~~vdgiii~~~~~~~~~~~~~~~~-~~iPvV~~ 93 (304)
T 3o1i_D 62 WGANAIILGTVDPHAYEHNLKSWV-GNTPVFAT 93 (304)
T ss_dssp HTCSEEEECCSSTTSSTTTHHHHT-TTSCEEEC
T ss_pred cCCCEEEEeCCChhHHHHHHHHHc-CCCCEEEe
Confidence 46788888876666 67789998 99999987
No 114
>4dad_A Putative pilus assembly-related protein; response regulator receiver domain, CHEY-related protein, ST genomics; 2.50A {Burkholderia pseudomallei} PDB: 4dn6_A
Probab=25.75 E-value=1e+02 Score=23.15 Aligned_cols=81 Identities=10% Similarity=0.052 Sum_probs=40.9
Q ss_pred CCCcEEEEccCchhHHHHHHHHHHhCCccccCCccCCccCccccccc-cCCceEEEeCCCCCc---hhHHHhh--hcCCC
Q 021262 74 NPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSF-NEPRLLILTDPRTDH---QPIKEAA--LGNIP 147 (315)
Q Consensus 74 n~~~IlfVstr~~~q~aV~kfA~~tga~~i~grw~pGtLTN~~~~~f-~eP~lLIV~DP~~d~---qaI~EAs--~lnIP 147 (315)
++.+||+|...+.....+.++.+..|.+-+...-.+...-... ..- ..|++||+---..+. ..+++.. .-++|
T Consensus 19 ~~~~ilivdd~~~~~~~l~~~L~~~g~~~v~~~~~~~~~~~~~-~~~~~~~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~ 97 (146)
T 4dad_A 19 GMINILVASEDASRLAHLARLVGDAGRYRVTRTVGRAAQIVQR-TDGLDAFDILMIDGAALDTAELAAIEKLSRLHPGLT 97 (146)
T ss_dssp GGCEEEEECSCHHHHHHHHHHHHHHCSCEEEEECCCHHHHTTC-HHHHTTCSEEEEECTTCCHHHHHHHHHHHHHCTTCE
T ss_pred CCCeEEEEeCCHHHHHHHHHHHhhCCCeEEEEeCCHHHHHHHH-HhcCCCCCEEEEeCCCCCccHHHHHHHHHHhCCCCc
Confidence 4567888888887777777777776633332211111010000 011 457866553322332 2233222 23688
Q ss_pred ceeeccCC
Q 021262 148 TIAFCDTD 155 (315)
Q Consensus 148 tIAL~DTd 155 (315)
+|.+.+.+
T Consensus 98 ii~lt~~~ 105 (146)
T 4dad_A 98 CLLVTTDA 105 (146)
T ss_dssp EEEEESCC
T ss_pred EEEEeCCC
Confidence 88887654
No 115
>3oy2_A Glycosyltransferase B736L; rossmann fold, GDP-mannose, sugar, VIRU proteins, viral protein,transferase; 2.31A {Paramecium bursaria chlorella virus NY} PDB: 3oy7_A*
Probab=25.56 E-value=1.2e+02 Score=27.36 Aligned_cols=96 Identities=10% Similarity=0.030 Sum_probs=56.4
Q ss_pred HHHHHHHHHHHHHHHHhhCCCcEEEEccCchh-----HHHHHHHHHHhCCccc-c----CCccCCccCccc-cccccCCc
Q 021262 56 GKTWEKLQMAARVIVAIENPGDIIVQSARPYG-----QRAVLKFAKYTHAHAI-A----GRHTPGTFTNQM-QTSFNEPR 124 (315)
Q Consensus 56 ~kT~ekL~~Aa~~I~~I~n~~~IlfVstr~~~-----q~aV~kfA~~tga~~i-~----grw~pGtLTN~~-~~~f~eP~ 124 (315)
.|=.+.|..|+..+..-...-++++++..+.. ...+++.++..|..-- . --+..|.+.+.. ..-++.-|
T Consensus 196 ~Kg~~~li~a~~~l~~~~~~~~l~ivG~g~~~~~~~l~~~~~~~~~~~~l~~~v~~l~~vv~~~g~~~~~~~~~~~~~ad 275 (413)
T 3oy2_A 196 RKRLDIYVLAAARFISKYPDAKVRFLCNSHHESKFDLHSIALRELVASGVDNVFTHLNKIMINRTVLTDERVDMMYNACD 275 (413)
T ss_dssp GGTHHHHHHHHHHHHHHCTTCCEEEEEECCTTCSCCHHHHHHHHHHHHTCSCHHHHHTTEEEECSCCCHHHHHHHHHHCS
T ss_pred hcCcHHHHHHHHHHHHhCCCcEEEEEeCCcccchhhHHHHHHHHHHHcCcccccccccceeeccCcCCHHHHHHHHHhCC
Confidence 45556666666665543334577788766532 3567777777765420 0 013355554322 22345667
Q ss_pred eEEEeCCCCC-chhHHHhhhcCCCceee
Q 021262 125 LLILTDPRTD-HQPIKEAALGNIPTIAF 151 (315)
Q Consensus 125 lLIV~DP~~d-~qaI~EAs~lnIPtIAL 151 (315)
++|+..-.+. ...+.||...|+|+|+-
T Consensus 276 v~v~pS~~E~~~~~~lEAma~G~PvI~s 303 (413)
T 3oy2_A 276 VIVNCSSGEGFGLCSAEGAVLGKPLIIS 303 (413)
T ss_dssp EEEECCSCCSSCHHHHHHHTTTCCEEEE
T ss_pred EEEeCCCcCCCCcHHHHHHHcCCCEEEc
Confidence 7776543211 45789999999999983
No 116
>2qzs_A Glycogen synthase; glycosyl-transferase, GT-B fold, rossmann fold, closed-form, ADP and glucose binding, glycogen biosynthesis; HET: GLC ADP 250; 2.20A {Escherichia coli} PDB: 2r4t_A* 2r4u_A* 3guh_A* 3cx4_A* 3cop_A* 3d1j_A
Probab=25.43 E-value=76 Score=29.49 Aligned_cols=89 Identities=9% Similarity=-0.018 Sum_probs=51.8
Q ss_pred HHHHHHHHHHHHHHHhhCCCcEEEEccCch-hHHHHHHHHHHhCCccccCCccCCccCccc-cccccCCceEEEeCCCCC
Q 021262 57 KTWEKLQMAARVIVAIENPGDIIVQSARPY-GQRAVLKFAKYTHAHAIAGRHTPGTFTNQM-QTSFNEPRLLILTDPRTD 134 (315)
Q Consensus 57 kT~ekL~~Aa~~I~~I~n~~~IlfVstr~~-~q~aV~kfA~~tga~~i~grw~pGtLTN~~-~~~f~eP~lLIV~DP~~d 134 (315)
|=...|..|+..+.. .+-+++++|..+. ....+++.++..+... .+..|. .+.. ..-+..-|++|+..-.+.
T Consensus 305 Kg~~~li~a~~~l~~--~~~~l~ivG~g~~~~~~~l~~~~~~~~~~v---~~~~g~-~~~~~~~~~~~adv~v~pS~~E~ 378 (485)
T 2qzs_A 305 KGLDLVLEALPGLLE--QGGQLALLGAGDPVLQEGFLAAAAEYPGQV---GVQIGY-HEAFSHRIMGGADVILVPSRFEP 378 (485)
T ss_dssp GCHHHHHHHHHHHHH--TTCEEEEEEEECHHHHHHHHHHHHHSTTTE---EEEESC-CHHHHHHHHHHCSEEEECCSCCS
T ss_pred cCHHHHHHHHHHHhh--CCcEEEEEeCCchHHHHHHHHHHHhCCCcE---EEeCCC-CHHHHHHHHHhCCEEEECCccCC
Confidence 334445555554433 3567778887652 3455667777665211 124454 3322 233556677776543222
Q ss_pred -chhHHHhhhcCCCceee
Q 021262 135 -HQPIKEAALGNIPTIAF 151 (315)
Q Consensus 135 -~qaI~EAs~lnIPtIAL 151 (315)
-..+.||..+|+|+|+-
T Consensus 379 ~g~~~lEAma~G~PvI~s 396 (485)
T 2qzs_A 379 CGLTQLYGLKYGTLPLVR 396 (485)
T ss_dssp SCSHHHHHHHHTCEEEEE
T ss_pred CcHHHHHHHHCCCCEEEC
Confidence 45788999999999986
No 117
>1a9x_B Carbamoyl phosphate synthetase (small chain); amidotransferase, thioester; HET: CYG ADP; 1.80A {Escherichia coli} SCOP: c.8.3.1 c.23.16.1 PDB: 1bxr_B* 1ce8_B* 1jdb_C* 1cs0_B* 1m6v_B* 1c30_B* 1c3o_B* 1kee_B* 1t36_B*
Probab=25.37 E-value=72 Score=30.63 Aligned_cols=70 Identities=16% Similarity=0.210 Sum_probs=40.4
Q ss_pred cEEEEccCchhHHHHHHHHHHhCCccccCCccCCccCccccccccCCceEEEe----CCCCC---chhHHHhhhcCCCce
Q 021262 77 DIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILT----DPRTD---HQPIKEAALGNIPTI 149 (315)
Q Consensus 77 ~IlfVstr~~~q~aV~kfA~~tga~~i~grw~pGtLTN~~~~~f~eP~lLIV~----DP~~d---~qaI~EAs~lnIPtI 149 (315)
+|+++...-. .-+.+.....|+..+.-++. ++.....-..||.||+. ||..+ ...|+++...++|+.
T Consensus 192 ~V~viD~G~k--~ni~r~L~~~G~~v~vvp~~----~~~e~i~~~~~DGliLsGGPgdp~~~~~~~~~Ir~~~~~~~PIL 265 (379)
T 1a9x_B 192 HVVAYDFGAK--RNILRMLVDRGCRLTIVPAQ----TSAEDVLKMNPDGIFLSNGPGDPAPCDYAITAIQKFLETDIPVF 265 (379)
T ss_dssp EEEEEESSCC--HHHHHHHHHTTEEEEEEETT----CCHHHHHTTCCSEEEECCCSBCSTTCHHHHHHHHHHTTSCCCEE
T ss_pred EEEEEECCCh--HHHHHHHHHCCCEEEEEecc----CCHHHHhhcCCCEEEEeCCCCChHHHHHHHHHHHHHHHcCCCEE
Confidence 5777755322 33555555667655432332 11111111358999995 45443 456788877799999
Q ss_pred eec
Q 021262 150 AFC 152 (315)
Q Consensus 150 AL~ 152 (315)
+||
T Consensus 266 GIC 268 (379)
T 1a9x_B 266 GIC 268 (379)
T ss_dssp EET
T ss_pred EEC
Confidence 998
No 118
>3g68_A Putative phosphosugar isomerase; SIS domain, double-SIS DOMA protein, structural genomics, joint center for structural G JCSG; HET: MSE CIT; 1.80A {Clostridium difficile}
Probab=25.35 E-value=4e+02 Score=24.51 Aligned_cols=114 Identities=11% Similarity=0.065 Sum_probs=70.3
Q ss_pred hCCCcEEEEccCch---hHHHHHHHHHHhCCc---cccCCccCCccCccccccccCCc-eEEEeCCCCC---chhHHHhh
Q 021262 73 ENPGDIIVQSARPY---GQRAVLKFAKYTHAH---AIAGRHTPGTFTNQMQTSFNEPR-LLILTDPRTD---HQPIKEAA 142 (315)
Q Consensus 73 ~n~~~IlfVstr~~---~q~aV~kfA~~tga~---~i~grw~pGtLTN~~~~~f~eP~-lLIV~DP~~d---~qaI~EAs 142 (315)
.+..+++|+|+... ..+.-+|+-+-+..+ |-++-|..|.+. +-.++ .||++.+..+ ...+.|..
T Consensus 206 ~~~~~~~~lGrG~~~~~A~E~ALKlkE~s~i~ae~~~a~E~~HGP~a------lid~~~pvi~~~~~~~~~~~~~~~~~~ 279 (352)
T 3g68_A 206 VNSKEIRIIGHSDIYGDTLEAALKLLETMRIPVTGYEFEEFIHGIYN------AINSDSTIFILDTGKEPRVTKMIDVLS 279 (352)
T ss_dssp HTCCEEEEEECGGGHHHHHHHHHHHHHHHCSCEEEEEHHHHHTTGGG------GCCTTEEEEEEECSCCTTHHHHHHHHH
T ss_pred hCCCcEEEEeCCCCHHHHHHHHHHHHHHhcccccccchhhccccchh------eeCCCceEEEEECCchHHHHHHHHHHH
Confidence 46678999988653 456667777766433 334556666542 12222 2444444322 34677888
Q ss_pred hcCCCceeeccCCCCCCcceEEecCCCCC-cchH--HHHHHHHHHHHHHhhcCC
Q 021262 143 LGNIPTIAFCDTDSPMRYVDIGIPANNKG-KHSI--GCLFWLLARMVLQMRGTI 193 (315)
Q Consensus 143 ~lnIPtIAL~DTds~~~~VD~pIP~Nnds-~~SI--~li~~lLaraVl~~rg~i 193 (315)
..+-.++.|.+.+.. ...++.||.-.+. ...+ -..+++|+..+-..||..
T Consensus 280 ~~g~~v~~i~~~~~~-~~~~~~~p~~~~~~~~pl~~~v~~Qlla~~~A~~~G~d 332 (352)
T 3g68_A 280 GWTENVFAIGRDVTE-NDKNLKIDITDNPYYQTFNFIVPIQLICGEIPTLRGVD 332 (352)
T ss_dssp TTCSCEEEEESSCCC-STTCEECCCCSCTTGGGGTTTHHHHHHHHHSGGGGTCC
T ss_pred HcCCeEEEEecCCCC-CceeEEeCCCCchhHhHHHHHHHHHHHHHHHHHHhCcC
Confidence 889999999876542 4567888864332 2222 345788998888888874
No 119
>1n2z_A Vitamin B12 transport protein BTUF; HET: CNC PG4; 2.00A {Escherichia coli} SCOP: c.92.2.2 PDB: 2qi9_F* 4dbl_E 1n4a_A* 1n4d_A
Probab=25.29 E-value=44 Score=28.66 Aligned_cols=31 Identities=16% Similarity=0.135 Sum_probs=22.3
Q ss_pred cCCceEEEeCCCCCchhHHHhhhcCCCceee
Q 021262 121 NEPRLLILTDPRTDHQPIKEAALGNIPTIAF 151 (315)
Q Consensus 121 ~eP~lLIV~DP~~d~qaI~EAs~lnIPtIAL 151 (315)
-.|||||..+...+...+..-++.+|||+.+
T Consensus 56 l~PDLIi~~~~~~~~~~~~~L~~~gipvv~~ 86 (245)
T 1n2z_A 56 LKPDLVIAWRGGNAERQVDQLASLGIKVMWV 86 (245)
T ss_dssp TCCSEEEECTTTSCHHHHHHHHHHTCCEEEC
T ss_pred cCCCEEEEeCCCCcHHHHHHHHHCCCcEEEe
Confidence 6899999864333445566677889999865
No 120
>2o20_A Catabolite control protein A; CCPA, transcriptional regulator, helix-turn-helix, transcrip; 1.90A {Lactococcus lactis}
Probab=25.26 E-value=1.1e+02 Score=27.05 Aligned_cols=43 Identities=7% Similarity=-0.003 Sum_probs=28.7
Q ss_pred cCCceEEEeCCCCCchhHHHhhhcCCCceeeccCCCCCCcceEE
Q 021262 121 NEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIG 164 (315)
Q Consensus 121 ~eP~lLIV~DP~~d~qaI~EAs~lnIPtIAL~DTds~~~~VD~p 164 (315)
+..|.||+.....+...+.++...+||+|.+ |+..+-..+++.
T Consensus 118 ~~vdgiI~~~~~~~~~~~~~l~~~~iPvV~~-~~~~~~~~~~~V 160 (332)
T 2o20_A 118 KQVDGIVYMGSSLDEKIRTSLKNSRTPVVLV-GTIDGDKEIPSV 160 (332)
T ss_dssp TTCSEEEECSSCCCHHHHHHHHHHCCCEEEE-SCCCTTSCSCEE
T ss_pred CCCCEEEEeCCCCCHHHHHHHHhCCCCEEEE-ccccCCCCCCEE
Confidence 5688888877655556778887889999876 544332234443
No 121
>2r79_A Periplasmic binding protein; heme transport, transport prote; HET: HEM; 2.40A {Pseudomonas aeruginosa}
Probab=25.25 E-value=57 Score=28.69 Aligned_cols=32 Identities=16% Similarity=0.127 Sum_probs=23.4
Q ss_pred ccCCceEEEeCCCCCchhHHHhhhcCCCceee
Q 021262 120 FNEPRLLILTDPRTDHQPIKEAALGNIPTIAF 151 (315)
Q Consensus 120 f~eP~lLIV~DP~~d~qaI~EAs~lnIPtIAL 151 (315)
--.|||||..+.......+..-++++|||+.+
T Consensus 57 ~l~PDLIi~~~~~~~~~~~~~L~~~gipvv~~ 88 (283)
T 2r79_A 57 ALRPDILIGTEEMGPPPVLKQLEGAGVRVETL 88 (283)
T ss_dssp TTCCSEEEECTTCCCHHHHHHHHHTTCCEEEC
T ss_pred hcCCCEEEEeCccCcHHHHHHHHHcCCcEEEe
Confidence 36899998866433445666777889999876
No 122
>1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo sapiens} SCOP: c.37.1.19
Probab=25.07 E-value=1.4e+02 Score=24.17 Aligned_cols=67 Identities=12% Similarity=0.058 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHhhCCCcEEEEccCchhHHHHHHHHHHhCCccccCCccCCccCcccc----ccc--cCCceEEEeCC
Q 021262 61 KLQMAARVIVAIENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQ----TSF--NEPRLLILTDP 131 (315)
Q Consensus 61 kL~~Aa~~I~~I~n~~~IlfVstr~~~q~aV~kfA~~tga~~i~grw~pGtLTN~~~----~~f--~eP~lLIV~DP 131 (315)
|+.....++.......-|+|++++.....+...+.+ .|... ..+.|.++.... ..| .+.++||.||-
T Consensus 18 K~~~L~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~-~~~~~---~~~hg~~~~~~r~~~~~~f~~g~~~vLvaT~~ 90 (172)
T 1t5i_A 18 KNRKLFDLLDVLEFNQVVIFVKSVQRCIALAQLLVE-QNFPA---IAIHRGMPQEERLSRYQQFKDFQRRILVATNL 90 (172)
T ss_dssp HHHHHHHHHHHSCCSSEEEECSSHHHHHHHHHHHHH-TTCCE---EEECTTSCHHHHHHHHHHHHTTSCSEEEESSC
T ss_pred HHHHHHHHHHhCCCCcEEEEECCHHHHHHHHHHHHh-cCCCE---EEEECCCCHHHHHHHHHHHHCCCCcEEEECCc
Confidence 444445555555445556777777666655444433 33221 123344443221 124 35567777764
No 123
>4hwg_A UDP-N-acetylglucosamine 2-epimerase; ssgcid, structural genomics, seattle structural genomics center for infectious disease, isomerase; 2.00A {Rickettsia bellii}
Probab=24.86 E-value=42 Score=31.62 Aligned_cols=33 Identities=12% Similarity=0.220 Sum_probs=26.0
Q ss_pred cCCceEEEeCCCCCchhHHHhhhcCCCceeeccC
Q 021262 121 NEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDT 154 (315)
Q Consensus 121 ~eP~lLIV~DP~~d~qaI~EAs~lnIPtIAL~DT 154 (315)
..||+|++.+....--+..-|.+.|||++ .+..
T Consensus 93 ~kPD~Vlv~gd~~~~~aalaA~~~~IPv~-h~ea 125 (385)
T 4hwg_A 93 EKPDAVLFYGDTNSCLSAIAAKRRKIPIF-HMEA 125 (385)
T ss_dssp HCCSEEEEESCSGGGGGHHHHHHTTCCEE-EESC
T ss_pred cCCcEEEEECCchHHHHHHHHHHhCCCEE-EEeC
Confidence 58999999987766666788999999965 4443
No 124
>2x6q_A Trehalose-synthase TRET; biosynthetic protein; 2.20A {Pyrococcus horikoshii} PDB: 2x6r_A 2xa1_A 2xa2_A* 2xa9_A* 2xmp_A*
Probab=24.59 E-value=1.6e+02 Score=26.60 Aligned_cols=90 Identities=9% Similarity=0.007 Sum_probs=47.3
Q ss_pred HHHHHHHHHHHHHhhCCCcEEEEccCch----hHHHHHHHHHHhCCc-cccCCccCCccCcc----ccccccCCceEEEe
Q 021262 59 WEKLQMAARVIVAIENPGDIIVQSARPY----GQRAVLKFAKYTHAH-AIAGRHTPGTFTNQ----MQTSFNEPRLLILT 129 (315)
Q Consensus 59 ~ekL~~Aa~~I~~I~n~~~IlfVstr~~----~q~aV~kfA~~tga~-~i~grw~pGtLTN~----~~~~f~eP~lLIV~ 129 (315)
.+.|..|+..+..-...-+++++|..+. ....++++++..|.. .| +|+ |.+.+. ...-+..-|++|+.
T Consensus 246 ~~~li~a~~~l~~~~~~~~l~i~G~g~~~~~~~~~~l~~~~~~~~~~~~V--~~~-G~~~~~~~~~~~~~~~~ad~~v~p 322 (416)
T 2x6q_A 246 IFDVIEIYRKVKEKIPGVQLLLVGVMAHDDPEGWIYFEKTLRKIGEDYDV--KVL-TNLIGVHAREVNAFQRASDVILQM 322 (416)
T ss_dssp HHHHHHHHHHHHHHCTTCEEEEEECCCTTCHHHHHHHHHHHHHHTTCTTE--EEE-EGGGTCCHHHHHHHHHHCSEEEEC
T ss_pred HHHHHHHHHHHHHhCCCeEEEEEecCcccchhHHHHHHHHHHHhCCCCcE--EEe-cccCCCCHHHHHHHHHhCCEEEEC
Confidence 3445555544443222456677776532 234455666665531 11 122 222221 11223455777665
Q ss_pred CCCCC-chhHHHhhhcCCCceee
Q 021262 130 DPRTD-HQPIKEAALGNIPTIAF 151 (315)
Q Consensus 130 DP~~d-~qaI~EAs~lnIPtIAL 151 (315)
.-.+. ...+-||..+|+|+|+-
T Consensus 323 s~~E~~~~~~lEAma~G~PvI~~ 345 (416)
T 2x6q_A 323 SIREGFGLTVTEAMWKGKPVIGR 345 (416)
T ss_dssp CSSCSSCHHHHHHHHTTCCEEEE
T ss_pred CCcCCCccHHHHHHHcCCCEEEc
Confidence 43222 45789999999999984
No 125
>2aml_A SIS domain protein; 46906266, LMO0035 protein, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=24.24 E-value=4.3e+02 Score=24.44 Aligned_cols=115 Identities=10% Similarity=0.060 Sum_probs=67.0
Q ss_pred hhCCCcEEEEccCch---hHHHHHHHHHHhCCc---cccCCccCCccCccccccccCCc-eEEEeCCCCC-----chhHH
Q 021262 72 IENPGDIIVQSARPY---GQRAVLKFAKYTHAH---AIAGRHTPGTFTNQMQTSFNEPR-LLILTDPRTD-----HQPIK 139 (315)
Q Consensus 72 I~n~~~IlfVstr~~---~q~aV~kfA~~tga~---~i~grw~pGtLTN~~~~~f~eP~-lLIV~DP~~d-----~qaI~ 139 (315)
+.+...++|+++... ..+.-+|+-+.+..+ |-.+-|..|.+.=. +++ .+|++.+..+ ...++
T Consensus 221 ~~~~~~~~~lG~G~~~~~A~E~aLKl~E~s~i~a~~~~~~E~~HGp~ali------~~~~~vi~l~~~~~~~~~~~~~~~ 294 (373)
T 2aml_A 221 FATAPKFTAIGYGPTVGTCKEFETKFSETVRVPSQGLDLEAFMHGPYLEV------NPQHRIFFLETASAVTERLVLLRD 294 (373)
T ss_dssp HTTCCCEEEEECTTHHHHHHHHHHHHHHHTCSCEEEEEHHHHTTTGGGGC------CTTCEEEEEECCSTTHHHHHHHHH
T ss_pred HhCCCcEEEEeCCCCHHHHHHHHHHHHHHhhhhceeccHHHhccccHHhc------CCCCeEEEEECCCchHHHHHHHHH
Confidence 346677899988653 466677777776532 34455666643221 122 2334433222 24568
Q ss_pred HhhhcCCCceeeccCCCCCCcceEEecC-CCCCcchH--HHHHHHHHHHHHHhhcCC
Q 021262 140 EAALGNIPTIAFCDTDSPMRYVDIGIPA-NNKGKHSI--GCLFWLLARMVLQMRGTI 193 (315)
Q Consensus 140 EAs~lnIPtIAL~DTds~~~~VD~pIP~-Nnds~~SI--~li~~lLaraVl~~rg~i 193 (315)
|....+-.++.|++.+.. ....+.||. .++-...+ -..+++|+..+-..||..
T Consensus 295 ~~~~~g~~v~~i~~~~~~-~~~~i~ip~~~~~~l~pl~~~v~~Qlla~~~A~~~G~d 350 (373)
T 2aml_A 295 YESKYTPFTYTVKFGKGE-DDRTLVIPTDLDEYQAPFLMILPFQILAHHIAELKGNK 350 (373)
T ss_dssp HHTTTCSCEEEEEESCCS-STTEEEECSCCCTTTTHHHHTHHHHHHHHHHHHHTTCC
T ss_pred HHHHcCCcEEEEECCCCC-CCcEEEcCCCCcchHHHHHHHHHHHHHHHHHHHHhCcC
Confidence 999999999999876521 113477883 22222222 234678888888888863
No 126
>3miz_A Putative transcriptional regulator protein, LACI family; LACL family, protein structure initiative II (PSI II), NYSGXRC, structural genomics; 1.91A {Rhizobium etli}
Probab=24.11 E-value=89 Score=26.98 Aligned_cols=58 Identities=14% Similarity=0.160 Sum_probs=32.6
Q ss_pred cCCceEEEeCCCCCchhHHHhhhcCCC------ceeeccCC-----CCCCcceEEecCCCCCcchHHHH
Q 021262 121 NEPRLLILTDPRTDHQPIKEAALGNIP------TIAFCDTD-----SPMRYVDIGIPANNKGKHSIGCL 178 (315)
Q Consensus 121 ~eP~lLIV~DP~~d~qaI~EAs~lnIP------tIAL~DTd-----s~~~~VD~pIP~Nnds~~SI~li 178 (315)
..|+.||+.+-..-.-+++.+...|+- +|++-|+. ..+.+.++-.|.-.-+..++.++
T Consensus 196 ~~~~ai~~~~d~~A~g~~~al~~~g~~vP~di~vig~D~~~~~~~~~~p~lttv~~~~~~~g~~av~~l 264 (301)
T 3miz_A 196 DRPTAIMSGNDEMAIQIYIAAMALGLRIPQDVSIVGFDDFRTVTMALKPELTTAALPYYDLGREGAKWL 264 (301)
T ss_dssp TCCSEEEESSHHHHHHHHHHHHTTTCCHHHHCEEECSBCCHHHHTTSSSCCBEEECCHHHHHHHHHHHH
T ss_pred CCCcEEEECCHHHHHHHHHHHHHcCCCCCCCeeEEEeCCcHHHhccCCCCeeEEecCHHHHHHHHHHHH
Confidence 468888887643223345555555553 78887766 33445666655544444444433
No 127
>1rzu_A Glycogen synthase 1; glycosyl-transferase, GT-B fold, rossmann fold, ADP-binding, transferase; HET: ADP; 2.30A {Agrobacterium tumefaciens} SCOP: c.87.1.8 PDB: 1rzv_A
Probab=23.88 E-value=72 Score=29.64 Aligned_cols=89 Identities=16% Similarity=0.045 Sum_probs=52.0
Q ss_pred HHHHHHHHHHHHHHHhhCCCcEEEEccCch-hHHHHHHHHHHhCCccccCCccCCccCccc-cccccCCceEEEeCCCCC
Q 021262 57 KTWEKLQMAARVIVAIENPGDIIVQSARPY-GQRAVLKFAKYTHAHAIAGRHTPGTFTNQM-QTSFNEPRLLILTDPRTD 134 (315)
Q Consensus 57 kT~ekL~~Aa~~I~~I~n~~~IlfVstr~~-~q~aV~kfA~~tga~~i~grw~pGtLTN~~-~~~f~eP~lLIV~DP~~d 134 (315)
|=.+.|..|+..+.. ..-+++++|..+. ....+++.++..+... .+..|. .+.. ..-++.-|++|+..-.+.
T Consensus 304 Kg~~~li~a~~~l~~--~~~~l~ivG~g~~~~~~~l~~~~~~~~~~v---~~~~g~-~~~~~~~~~~~adv~v~pS~~E~ 377 (485)
T 1rzu_A 304 KGIDLMAEAVDEIVS--LGGRLVVLGAGDVALEGALLAAASRHHGRV---GVAIGY-NEPLSHLMQAGCDAIIIPSRFEP 377 (485)
T ss_dssp TTHHHHHTTHHHHHH--TTCEEEEEECBCHHHHHHHHHHHHHTTTTE---EEEESC-CHHHHHHHHHHCSEEEECCSCCS
T ss_pred cCHHHHHHHHHHHHh--cCceEEEEeCCchHHHHHHHHHHHhCCCcE---EEecCC-CHHHHHHHHhcCCEEEECcccCC
Confidence 434455555554433 3567788887653 3455667777665211 123454 3322 233566677776543222
Q ss_pred -chhHHHhhhcCCCceee
Q 021262 135 -HQPIKEAALGNIPTIAF 151 (315)
Q Consensus 135 -~qaI~EAs~lnIPtIAL 151 (315)
-..+.||..+|+|+|+-
T Consensus 378 ~~~~~lEAma~G~PvI~s 395 (485)
T 1rzu_A 378 CGLTQLYALRYGCIPVVA 395 (485)
T ss_dssp SCSHHHHHHHHTCEEEEE
T ss_pred CCHHHHHHHHCCCCEEEe
Confidence 35789999999999984
No 128
>2fn9_A Ribose ABC transporter, periplasmic ribose-bindin; RBP, ribose binding protein, periplasmic binding protein, thermophilic proteins; 1.40A {Thermotoga maritima} PDB: 2fn8_A*
Probab=23.76 E-value=1.7e+02 Score=24.87 Aligned_cols=32 Identities=19% Similarity=0.234 Sum_probs=22.5
Q ss_pred cCCceEEEeCCCCCc--hhHHHhhhcCCCceeec
Q 021262 121 NEPRLLILTDPRTDH--QPIKEAALGNIPTIAFC 152 (315)
Q Consensus 121 ~eP~lLIV~DP~~d~--qaI~EAs~lnIPtIAL~ 152 (315)
+.+|.||+.....+. ..++++...+||+|.+-
T Consensus 57 ~~vdgiI~~~~~~~~~~~~~~~~~~~~iPvV~~~ 90 (290)
T 2fn9_A 57 AGYDAIIFNPTDADGSIANVKRAKEAGIPVFCVD 90 (290)
T ss_dssp TTCSEEEECCSCTTTTHHHHHHHHHTTCCEEEES
T ss_pred cCCCEEEEecCChHHHHHHHHHHHHCCCeEEEEe
Confidence 356777776544332 56788888899999773
No 129
>1dbq_A Purine repressor; transcription regulation, DNA-binding regulatory protein; 2.20A {Escherichia coli} SCOP: c.93.1.1 PDB: 1jhz_A
Probab=23.00 E-value=1.7e+02 Score=24.80 Aligned_cols=119 Identities=13% Similarity=0.090 Sum_probs=0.0
Q ss_pred HHHHHHHHHhhCCCcEEEEccC------chhHHHHHHHHHHhCCccccCCccCCccCccccccc--------cCCceEEE
Q 021262 63 QMAARVIVAIENPGDIIVQSAR------PYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSF--------NEPRLLIL 128 (315)
Q Consensus 63 ~~Aa~~I~~I~n~~~IlfVstr------~~~q~aV~kfA~~tga~~i~grw~pGtLTN~~~~~f--------~eP~lLIV 128 (315)
.++++.+... ..++|.|++.. ....+..++..+..|..........|.++....... ..|+.||+
T Consensus 115 ~~~~~~L~~~-G~~~i~~i~~~~~~~~~~~R~~g~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~~ 193 (289)
T 1dbq_A 115 YMAGRYLIER-GHREIGVIPGPLERNTGAGRLAGFMKAMEEAMIKVPESWIVQGDFEPESGYRAMQQILSQPHRPTAVFC 193 (289)
T ss_dssp HHHHHHHHHT-TCCSEEEECCC------CHHHHHHHHHHHHTTCCCCGGGBCCCCSSHHHHHHHHHHHHTSSSCCSEEEE
T ss_pred HHHHHHHHHC-CCCeEEEEecCCccccHHHHHHHHHHHHHHCCCCCChHHeEeCCCCHHHHHHHHHHHHhCCCCCCEEEE
Q ss_pred eCCCCCchhHHHhhhcCCC------ceeeccCC----CCCCcceEEecCCCCCcchHHHHHHHH
Q 021262 129 TDPRTDHQPIKEAALGNIP------TIAFCDTD----SPMRYVDIGIPANNKGKHSIGCLFWLL 182 (315)
Q Consensus 129 ~DP~~d~qaI~EAs~lnIP------tIAL~DTd----s~~~~VD~pIP~Nnds~~SI~li~~lL 182 (315)
.+-..-..+++.+...|+. +|++-|+. ..+.+.++-.|.-.-+..++.+++.+|
T Consensus 194 ~~d~~a~g~~~al~~~G~~vP~di~vvg~d~~~~~~~~~p~lttv~~~~~~~g~~a~~~l~~~i 257 (289)
T 1dbq_A 194 GGDIMAMGALCAADEMGLRVPQDVSLIGYDNVRNARYFTPALTTIHQPKDSLGETAFNMLLDRI 257 (289)
T ss_dssp SCHHHHHHHHHHHHHTTCCTTTTCEEEEEECCTTGGGSSSCCEEEECCSHHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHcCCCCCCceEEEeeCCchHhccCCCccccccCCHHHHHHHHHHHHHHHH
No 130
>3gnn_A Nicotinate-nucleotide pyrophosphorylase; decode biostructures, ssgcid, niaid, SBRI, UWPPG, glycosyltransferase, transferase, structural genomics; 2.25A {Burkholderia pseudomallei}
Probab=22.83 E-value=1.5e+02 Score=27.65 Aligned_cols=33 Identities=18% Similarity=0.121 Sum_probs=23.2
Q ss_pred CCCcEEEEccCch--hHHHHHHHHHHhCCccccCCc
Q 021262 74 NPGDIIVQSARPY--GQRAVLKFAKYTHAHAIAGRH 107 (315)
Q Consensus 74 n~~~IlfVstr~~--~q~aV~kfA~~tga~~i~grw 107 (315)
.+.++.+++||+. +-|.+.|.|-++|.. .++|+
T Consensus 143 ~g~~~~i~~TRKt~Pglr~l~kyAv~~GGg-~nHR~ 177 (298)
T 3gnn_A 143 ADTRARILDTRKTLPGLRLAQKYAVRVGGG-ANQRL 177 (298)
T ss_dssp TTSSCCEECCSCCCTTCHHHHHHHHHHTTC-CCC--
T ss_pred CCCCeEEEEecCCCcchHHHHHhhHHhcCc-cceec
Confidence 3457888899875 568899999998765 34443
No 131
>1jx6_A LUXP protein; protein-ligand complex, signaling protein; HET: AI2; 1.50A {Vibrio harveyi} SCOP: c.93.1.1 PDB: 1zhh_A* 2hj9_A*
Probab=22.72 E-value=1.3e+02 Score=26.46 Aligned_cols=35 Identities=11% Similarity=0.150 Sum_probs=25.4
Q ss_pred cCCceEEEeCCCCC--chhHHHhhhcCCCceeeccCCC
Q 021262 121 NEPRLLILTDPRTD--HQPIKEAALGNIPTIAFCDTDS 156 (315)
Q Consensus 121 ~eP~lLIV~DP~~d--~qaI~EAs~lnIPtIAL~DTds 156 (315)
+.+|.||+. ...+ ...++++...+||+|.++|...
T Consensus 103 ~~vdgiIi~-~~~~~~~~~~~~~~~~~ip~V~~~~~~~ 139 (342)
T 1jx6_A 103 SKSDYLIFT-LDTTRHRKFVEHVLDSTNTKLILQNITT 139 (342)
T ss_dssp TTCSEEEEC-CSSSTTHHHHHHHHHHCSCEEEEETCCS
T ss_pred cCCCEEEEe-CChHhHHHHHHHHHHcCCCEEEEecCCC
Confidence 467888873 2222 4678888888999999988754
No 132
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=22.55 E-value=85 Score=28.21 Aligned_cols=105 Identities=14% Similarity=0.220 Sum_probs=53.5
Q ss_pred HHHHHHHHHHHHhhCCCcEEEEccCchhHHHHHHHHHHhCCccccCCccCCccCccccc----cc--cCCceEEEeCCCC
Q 021262 60 EKLQMAARVIVAIENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQT----SF--NEPRLLILTDPRT 133 (315)
Q Consensus 60 ekL~~Aa~~I~~I~n~~~IlfVstr~~~q~aV~kfA~~tga~~i~grw~pGtLTN~~~~----~f--~eP~lLIV~DP~~ 133 (315)
.++.....++.....+.-++|++++.........+.+. |.. -..+.|.++...+. .| .+.++||.||--.
T Consensus 252 ~~~~~l~~~~~~~~~~~~lvf~~~~~~~~~l~~~L~~~-~~~---~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~ 327 (412)
T 3fht_A 252 EKFQALCNLYGAITIAQAMIFCHTRKTASWLAAELSKE-GHQ---VALLSGEMMVEQRAAVIERFREGKEKVLVTTNVCA 327 (412)
T ss_dssp HHHHHHHHHHHHHSSSEEEEECSSHHHHHHHHHHHHHT-TCC---CEEECTTSCHHHHHHHHHHHHTTSCSEEEECGGGT
T ss_pred HHHHHHHHHHhhcCCCCEEEEeCCHHHHHHHHHHHHhC-CCe---EEEecCCCCHHHHHHHHHHHHCCCCcEEEEcCccc
Confidence 34444444555554445566677776666555444433 321 11334444433221 24 3567788776422
Q ss_pred CchhHHHhhhcCCCceeeccCCCCCCcceEEecCCCCCcchHHHHHHHHHH
Q 021262 134 DHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLAR 184 (315)
Q Consensus 134 d~qaI~EAs~lnIPtIAL~DTds~~~~VD~pIP~Nnds~~SI~li~~lLar 184 (315)
.-++||-+-++ |.|-.|.|.+...|+..+.+.+.|
T Consensus 328 --------~Gidip~~~~V--------i~~~~p~~~~~~~s~~~~~Qr~GR 362 (412)
T 3fht_A 328 --------RGIDVEQVSVV--------INFDLPVDKDGNPDNETYLHRIGR 362 (412)
T ss_dssp --------SSCCCTTEEEE--------EESSCCBCSSSSBCHHHHHHHHTT
T ss_pred --------cCCCccCCCEE--------EEECCCCCCCCCcchheeecccCc
Confidence 33466654442 555567776666677666554433
No 133
>4gim_A Pseudouridine-5'-phosphate glycosidase; alpha-beta-alpha sandwich fold, hydrolase; HET: PSU; 1.80A {Escherichia coli} PDB: 4gij_A 4gik_A* 4gil_A*
Probab=22.18 E-value=2.1e+02 Score=27.29 Aligned_cols=26 Identities=19% Similarity=0.314 Sum_probs=19.4
Q ss_pred cCCceEEEeCCCCC-------------chhHHHhhhcCC
Q 021262 121 NEPRLLILTDPRTD-------------HQPIKEAALGNI 146 (315)
Q Consensus 121 ~eP~lLIV~DP~~d-------------~qaI~EAs~lnI 146 (315)
..+.-++|.+|-.+ .+|++||...||
T Consensus 249 gl~~g~lvanPIP~e~~i~~~~i~~~I~~Al~eA~~~gI 287 (335)
T 4gim_A 249 GLNGGLVVANPIPEQFAMPEHTINAAIDQAVAEAEAQGV 287 (335)
T ss_dssp TCCSCEEEECCCCGGGCCCHHHHHHHHHHHHHHHHHHTC
T ss_pred CCCCceEEeCCCCchhcCCHHHHHHHHHHHHHHHHHcCC
Confidence 46778888998654 457888888776
No 134
>1l7b_A DNA ligase; BRCT, autostructure, structural genomics, NESG, PSI, protein structure initiative, northeast structural genomics consortium; HET: DNA; NMR {Thermus thermophilus} SCOP: c.15.1.2
Probab=22.17 E-value=93 Score=23.77 Aligned_cols=61 Identities=11% Similarity=0.190 Sum_probs=36.3
Q ss_pred CCcEEEEccCchhHHHHHHHHHHhCCccccCCccCCccCccccccccCCceEEEeCCCCCchhHHHhhhcCCCcee
Q 021262 75 PGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTDHQPIKEAALGNIPTIA 150 (315)
Q Consensus 75 ~~~IlfVstr~~~q~aV~kfA~~tga~~i~grw~pGtLTN~~~~~f~eP~lLIV~DP~~d~qaI~EAs~lnIPtIA 150 (315)
+..|+|.++-...+.-+.+..+..|..+ ++.... .-++||+-+... .=++.|..+|||+|.
T Consensus 10 G~~~v~TG~l~~~R~e~~~~i~~~Gg~v----------~~sVsk---kt~~LV~g~~~g--sK~~kA~~lgI~Ii~ 70 (92)
T 1l7b_A 10 GLTFVITGELSRPREEVKALLRRLGAKV----------TDSVSR---KTSYLVVGENPG--SKLEKARALGVPTLT 70 (92)
T ss_dssp TCEEECSTTTTSCHHHHHHHHHHTTCEE----------ESCCSS---SCCCBEECSSSS--TTHHHHHCSSSCCEE
T ss_pred CcEEEEecCCCCCHHHHHHHHHHcCCEE----------eCcccC---CeeEEEeCCCCC--hHHHHHHHcCCcEEe
Confidence 3445555654445555666777766553 333322 236677665432 447889999999975
No 135
>1je3_A EC005, hypothetical 8.6 kDa protein in AMYA-FLIE intergenic region; mixed alpha-beta structure, structural genomics; NMR {Escherichia coli} SCOP: d.68.3.3
Probab=22.15 E-value=37 Score=26.43 Aligned_cols=56 Identities=13% Similarity=-0.006 Sum_probs=33.7
Q ss_pred cceeeecCCccccCHHHHHHHHHHHHHHHHHhhCCCcEEEEccCchhHHHHHHHHHHhCCcccc
Q 021262 41 YVFKRRNDGIYIINLGKTWEKLQMAARVIVAIENPGDIIVQSARPYGQRAVLKFAKYTHAHAIA 104 (315)
Q Consensus 41 YIyg~R~dGi~IINL~kT~ekL~~Aa~~I~~I~n~~~IlfVstr~~~q~aV~kfA~~tga~~i~ 104 (315)
+..-.|. -.+=+.+-+|.+. |..++.+..+.++.+.+...+-|.+||+..|-.++.
T Consensus 28 ~~LD~rG-l~CP~Pvlktkka-------L~~l~~Ge~L~Vl~dd~~a~~dIp~~~~~~G~~v~~ 83 (97)
T 1je3_A 28 YRLDMVG-EPCPYPAVATLEA-------MPQLKKGEILEVVSDCPQSINNIPLDARNHGYTVLD 83 (97)
T ss_dssp EEECSBC-CSSSSSTHHHHHH-------TTTCCSSCEEEEEEBCSSSSCHHHHHHHHHTCSEEE
T ss_pred eEEeCCC-CCCCHHHHHHHHH-------HHcCCCCCEEEEEECCcchHHHHHHHHHHCCCEEEE
Confidence 3344442 3454555554333 334434444556677777777799999999987755
No 136
>3h5o_A Transcriptional regulator GNTR; transcription regulator, GNTR,chromobacterium violaceum, PSI, SGX, DNA-binding; 2.30A {Chromobacterium violaceum}
Probab=22.00 E-value=1.8e+02 Score=25.57 Aligned_cols=33 Identities=12% Similarity=0.188 Sum_probs=26.8
Q ss_pred cCCceEEEeCCCCCchhHHHhhhcCCCceeecc
Q 021262 121 NEPRLLILTDPRTDHQPIKEAALGNIPTIAFCD 153 (315)
Q Consensus 121 ~eP~lLIV~DP~~d~qaI~EAs~lnIPtIAL~D 153 (315)
+..|-||+.....+...+.++...+||+|.+-+
T Consensus 117 ~~vdGiIi~~~~~~~~~~~~l~~~~iPvV~~~~ 149 (339)
T 3h5o_A 117 HRPDGVLITGLSHAEPFERILSQHALPVVYMMD 149 (339)
T ss_dssp TCCSEEEEECSCCCTTHHHHHHHTTCCEEEEES
T ss_pred CCCCEEEEeCCCCCHHHHHHHhcCCCCEEEEee
Confidence 578999998776666778888889999998844
No 137
>3lq1_A 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene- 1-carboxylate synthase; menaquinone biosynthesis, sephchc synthase, structural genomics; 2.60A {Listeria monocytogenes}
Probab=21.92 E-value=1.1e+02 Score=30.38 Aligned_cols=69 Identities=10% Similarity=0.043 Sum_probs=39.3
Q ss_pred HHHHHHHHHHhhCCCcEEEEccC--chhHHHHHHHHHHhCCccccCCcc-CCcc---------------CccccccccCC
Q 021262 62 LQMAARVIVAIENPGDIIVQSAR--PYGQRAVLKFAKYTHAHAIAGRHT-PGTF---------------TNQMQTSFNEP 123 (315)
Q Consensus 62 L~~Aa~~I~~I~n~~~IlfVstr--~~~q~aV~kfA~~tga~~i~grw~-pGtL---------------TN~~~~~f~eP 123 (315)
+.+++..|.. +.-+++++.. ....+.+.+||+++|...++.-+. .|.+ ++.....+.++
T Consensus 214 i~~~~~~L~~---~rPvIl~G~g~~~~~~~~l~~lae~~~~PV~~t~~~~~~~~~~~hp~~~g~~~~~~~~~~~~~~~~a 290 (578)
T 3lq1_A 214 IQKMVTECTG---KKGVFVVGPIDKKELEQPMVDLAKKLGWPILADPLSGLRSYGALDEVVIDQYDAFLKEAEIIDKLTP 290 (578)
T ss_dssp HHHHHHHTTT---SCEEEEECSCCCTTCHHHHHHHHHHHTCCEEECGGGSTTSBSSCCSSEECCHHHHTTSHHHHHHTCC
T ss_pred HHHHHHHhcc---CCeEEEECCCCChHHHHHHHHHHHhcCcEEEEecCCCCCCCCCCCccccccHHHHhcCccccccCCC
Confidence 4455544443 2335556542 234678999999999887653221 1222 11111124689
Q ss_pred ceEEEeCCCC
Q 021262 124 RLLILTDPRT 133 (315)
Q Consensus 124 ~lLIV~DP~~ 133 (315)
|+||.+..+.
T Consensus 291 Dlvl~~G~~~ 300 (578)
T 3lq1_A 291 EVVIRFGSMP 300 (578)
T ss_dssp SEEEEESSCC
T ss_pred CEEEEeCCcc
Confidence 9999999764
No 138
>3hhe_A Ribose-5-phosphate isomerase A; niaid, ssgcid, decode, SBRI, UW, STRU genomics, seattle structural genomics center for infectious; HET: 5RP; 2.30A {Bartonella henselae}
Probab=21.71 E-value=2.1e+02 Score=26.07 Aligned_cols=80 Identities=9% Similarity=0.076 Sum_probs=49.4
Q ss_pred HHHHHHHHHHHhhCCCcEEEEccCchhHHHHHHHHHHhCCccccCCccCCccCccccccccCCceEEEeCCCCCchhHHH
Q 021262 61 KLQMAARVIVAIENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTDHQPIKE 140 (315)
Q Consensus 61 kL~~Aa~~I~~I~n~~~IlfVstr~~~q~aV~kfA~~tga~~i~grw~pGtLTN~~~~~f~eP~lLIV~DP~~d~qaI~E 140 (315)
|-..|...+..| +.+++++++|..+....++.++++.. .| | ++.+|++. .+...+
T Consensus 28 K~~iA~~A~~~V-~dg~vIgLGsGST~~~~i~~L~~~~~---------~g-l-----------~ItvVttS---~~ta~~ 82 (255)
T 3hhe_A 28 KKMAALKALEFV-EDDMRLGIGSGSTVNEFIPLLGERVA---------NG-L-----------RVTCVATS---QYSEQL 82 (255)
T ss_dssp HHHHHHHHHTTC-CTTEEEEECCSHHHHHHHHHHHHHHH---------TT-C-----------CEEEEESS---HHHHHH
T ss_pred HHHHHHHHHHhC-CCCCEEEECCcHHHHHHHHHHHHhhc---------cC-C-----------cEEEEcCC---HHHHHH
Confidence 333344444334 56899999999888888777766521 01 0 34455543 244567
Q ss_pred hhhcCCCceeeccCCCCCCcceEEecCCC
Q 021262 141 AALGNIPTIAFCDTDSPMRYVDIGIPANN 169 (315)
Q Consensus 141 As~lnIPtIAL~DTds~~~~VD~pIP~Nn 169 (315)
+...|||++.+-+ ...+|+.|-+=|
T Consensus 83 l~~~GI~l~~l~~----~~~iD~afdGAD 107 (255)
T 3hhe_A 83 CHKFGVPISTLEK----IPELDLDIDGAD 107 (255)
T ss_dssp HHHTTCCBCCTTT----CCSBSEEEECCS
T ss_pred HHHcCCcEEeccc----ccccCEEEECCC
Confidence 7788999987732 336888886644
No 139
>2a9v_A GMP synthase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, ligase; 2.24A {Thermoplasma acidophilum} SCOP: c.23.16.1
Probab=21.59 E-value=1.3e+02 Score=25.75 Aligned_cols=70 Identities=11% Similarity=0.032 Sum_probs=37.2
Q ss_pred cEEEEccCchhHHHHHHHHHHhCCccccCCccCCccCccccccccCCceEEEeCC-CCC-------chhHHHhhhcCCCc
Q 021262 77 DIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDP-RTD-------HQPIKEAALGNIPT 148 (315)
Q Consensus 77 ~IlfVstr~~~q~aV~kfA~~tga~~i~grw~pGtLTN~~~~~f~eP~lLIV~DP-~~d-------~qaI~EAs~lnIPt 148 (315)
+|+++.........+.+..++.|...+.-++.. . ...+..+|.||++.- ..+ ....+++...++|+
T Consensus 15 ~i~~id~~~~~~~~~~~~l~~~G~~~~vv~~~~----~--~~~l~~~DglIl~GG~p~~~~~~~~~~~l~~~~~~~~~Pi 88 (212)
T 2a9v_A 15 KIYVVDNGGQWTHREWRVLRELGVDTKIVPNDI----D--SSELDGLDGLVLSGGAPNIDEELDKLGSVGKYIDDHNYPI 88 (212)
T ss_dssp BEEEEEESCCTTCHHHHHHHHTTCBCCEEETTS----C--GGGGTTCSEEEEEEECSCGGGTGGGHHHHHHHHHHCCSCE
T ss_pred eEEEEeCCCccHHHHHHHHHHCCCEEEEEeCCC----C--HHHHhCCCEEEECCCCCCCCcccccchhHHHHHHhCCCCE
Confidence 577775544334445555666676543322210 1 112234788888754 111 12345556678899
Q ss_pred eeec
Q 021262 149 IAFC 152 (315)
Q Consensus 149 IAL~ 152 (315)
.|||
T Consensus 89 LGIC 92 (212)
T 2a9v_A 89 LGIC 92 (212)
T ss_dssp EEET
T ss_pred EEEC
Confidence 9887
No 140
>2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics, structural consortium, SGC, alternative initiation, ATP-binding, devel protein; 2.80A {Homo sapiens}
Probab=21.44 E-value=82 Score=25.51 Aligned_cols=68 Identities=18% Similarity=0.201 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHhhCCCcEEEEccCchhHHHHHHHHHHhCCccccCCccCCccCccccc----cc--cCCceEEEeCCC
Q 021262 61 KLQMAARVIVAIENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQT----SF--NEPRLLILTDPR 132 (315)
Q Consensus 61 kL~~Aa~~I~~I~n~~~IlfVstr~~~q~aV~kfA~~tga~~i~grw~pGtLTN~~~~----~f--~eP~lLIV~DP~ 132 (315)
|+.....++.....+.-|+|++++.....+...+.+ .|.. -..+.|.++..... .| ...++||.||..
T Consensus 21 K~~~L~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~-~~~~---~~~~~g~~~~~~R~~~~~~f~~g~~~vLvaT~~~ 94 (175)
T 2rb4_A 21 KYQALCNIYGSITIGQAIIFCQTRRNAKWLTVEMIQ-DGHQ---VSLLSGELTVEQRASIIQRFRDGKEKVLITTNVC 94 (175)
T ss_dssp HHHHHHHHHTTSCCSEEEEECSCHHHHHHHHHHHHT-TTCC---EEEECSSCCHHHHHHHHHHHHTTSCSEEEECCSC
T ss_pred HHHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHH-cCCc---EEEEeCCCCHHHHHHHHHHHHcCCCeEEEEecch
Confidence 555445555544334445666777665544333322 2321 12334444433221 24 356778888753
No 141
>3lft_A Uncharacterized protein; ABC, ATPase, cassette, L-Trp, PSI, MCSG, structural genomics center for structural genomics; HET: MSE TRP; 1.35A {Streptococcus pneumoniae}
Probab=21.42 E-value=81 Score=27.42 Aligned_cols=108 Identities=10% Similarity=0.014 Sum_probs=54.3
Q ss_pred HHHHHHHHHh-hCCCcEEEEccCch--h---HHHHHHHHHHhCCccccCCccCCccCcccc---ccccCCceEEEeCCCC
Q 021262 63 QMAARVIVAI-ENPGDIIVQSARPY--G---QRAVLKFAKYTHAHAIAGRHTPGTFTNQMQ---TSFNEPRLLILTDPRT 133 (315)
Q Consensus 63 ~~Aa~~I~~I-~n~~~IlfVstr~~--~---q~aV~kfA~~tga~~i~grw~pGtLTN~~~---~~f~eP~lLIV~DP~~ 133 (315)
.++.+++..+ ..-++|.|++.... . .+..++.++..|..+.. .+... .....+ .-...|+.|++.+
T Consensus 120 ~~~~~~l~~~~pg~~~I~~i~~~~~~~~~~r~~g~~~al~~~gi~~~~-~~~~~-~~~~~~~~~~l~~~~dai~~~~--- 194 (295)
T 3lft_A 120 QQQVELIKALTPNVKTIGALYSSSEDNSKTQVEEFKAYAEKAGLTVET-FAVPS-TNEIASTVTVMTSKVDAIWVPI--- 194 (295)
T ss_dssp HHHHHHHHHHCTTCCEEEEEEETTCHHHHHHHHHHHHHHHHTTCEEEE-EEESS-GGGHHHHHHHHTTTCSEEEECS---
T ss_pred HHHHHHHHHhCCCCcEEEEEeCCCCcchHHHHHHHHHHHHHcCCEEEE-EecCC-HHHHHHHHHHHHhcCCEEEECC---
Confidence 3455555554 23468888865432 1 23445556666665432 22211 111111 1125789888864
Q ss_pred Cchh------HHH-hhhcCCCceeeccCC-CCCCcceEEecCCCCCcchH
Q 021262 134 DHQP------IKE-AALGNIPTIAFCDTD-SPMRYVDIGIPANNKGKHSI 175 (315)
Q Consensus 134 d~qa------I~E-As~lnIPtIAL~DTd-s~~~~VD~pIP~Nnds~~SI 175 (315)
|..+ +++ +...+||+|++-|.. ..+.+.++..|.-.-+..+.
T Consensus 195 D~~a~g~~~~l~~~~~~~~i~vig~d~~~~~~~~Lttv~~~~~~~G~~Aa 244 (295)
T 3lft_A 195 DNTIASGFPTVVSSNQSSKKPIYPSATAMVEVGGLASVVIDQHDLGVATG 244 (295)
T ss_dssp CHHHHHTHHHHHHHTTTTCCCEEESSHHHHTTTCCEEEECCHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHcCCCEEeCCHHHHhcCcEEEEecCHHHHHHHHH
Confidence 4333 333 334589999997654 23445666655433333333
No 142
>4hv4_A UDP-N-acetylmuramate--L-alanine ligase; MURC, yersinia pestis peptidoglycan synthesis; HET: AMP; 2.25A {Yersinia pestis} PDB: 2f00_A
Probab=21.29 E-value=1.3e+02 Score=29.13 Aligned_cols=58 Identities=16% Similarity=0.263 Sum_probs=35.8
Q ss_pred ccCCceEEEeC-CCCCchhHHHhhhcCCCceeeccCCCCC--CcceEEecCCCCCcchHHHH
Q 021262 120 FNEPRLLILTD-PRTDHQPIKEAALGNIPTIAFCDTDSPM--RYVDIGIPANNKGKHSIGCL 178 (315)
Q Consensus 120 f~eP~lLIV~D-P~~d~qaI~EAs~lnIPtIAL~DTds~~--~~VD~pIP~Nnds~~SI~li 178 (315)
+...|+||+.- -..++-.+.+|...|||++.=.+--..+ ..--+.|=|- +++.+..-|
T Consensus 79 ~~~~d~vV~Spgi~~~~p~~~~a~~~gi~v~~~~e~l~~~~~~~~~IaVTGT-nGKTTTt~m 139 (494)
T 4hv4_A 79 VLDASVVVVSTAISADNPEIVAAREARIPVIRRAEMLAELMRYRHGIAVAGT-HGKTTTTAM 139 (494)
T ss_dssp GTTCSEEEECTTSCTTCHHHHHHHHTTCCEEEHHHHHHHHHTTSEEEEEECS-SSHHHHHHH
T ss_pred cCCCCEEEECCCCCCCCHHHHHHHHCCCCEEcHHHHHHHHhcCCCEEEEecC-CChHHHHHH
Confidence 45678887764 3456778899999999998643321000 1124788775 466665544
No 143
>3fij_A LIN1909 protein; 11172J, uncharacterized protein, nysgrc, PSI-II, structural genomics, protein structure initiative; 2.30A {Listeria innocua}
Probab=20.97 E-value=54 Score=29.02 Aligned_cols=19 Identities=21% Similarity=0.399 Sum_probs=16.5
Q ss_pred CchhHHHhhhcCCCceeec
Q 021262 134 DHQPIKEAALGNIPTIAFC 152 (315)
Q Consensus 134 d~qaI~EAs~lnIPtIAL~ 152 (315)
+...|+++...++|+.|||
T Consensus 97 ~~~lir~a~~~~~PiLGIC 115 (254)
T 3fij_A 97 EIALVRAALDAGKPIFAIC 115 (254)
T ss_dssp HHHHHHHHHHTTCCEEEET
T ss_pred HHHHHHHHHHcCCCEEEEC
Confidence 3578899999999999998
No 144
>2hsg_A Glucose-resistance amylase regulator; CCPA, transcriptional regulator, transcription regulator; 2.50A {Bacillus megaterium} SCOP: a.35.1.5 c.93.1.1 PDB: 1rzr_G 2jcg_A 1zvv_A 3oqo_A* 3oqm_A* 3oqn_A*
Probab=20.95 E-value=92 Score=27.45 Aligned_cols=107 Identities=8% Similarity=0.061 Sum_probs=56.5
Q ss_pred HHHHHHHHHHHHHHH--------Hhh--CCCcEEEEc---cCchhH---HHHHHHHHHhCCccccCCccCCccCccc---
Q 021262 56 GKTWEKLQMAARVIV--------AIE--NPGDIIVQS---ARPYGQ---RAVLKFAKYTHAHAIAGRHTPGTFTNQM--- 116 (315)
Q Consensus 56 ~kT~ekL~~Aa~~I~--------~I~--n~~~IlfVs---tr~~~q---~aV~kfA~~tga~~i~grw~pGtLTN~~--- 116 (315)
.+|.++.+.|++-+- .+. +...|-++. +.++.. +.+.+.++..|-..+-. ...+....+.
T Consensus 31 ~~tr~rV~~aa~~lgY~pn~~ar~l~~~~~~~Ig~i~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~-~~~~~~~~~~~~~ 109 (332)
T 2hsg_A 31 PSTRKKVLETIERLGYRPNAVARGLASKKTTTVGVIIPDISNIFYAELARGIEDIATMYKYNIILS-NSDQNQDKELHLL 109 (332)
T ss_dssp HHHHHHHHHHHHHHTCCSCHHHHHHTTC-CCEEEEEEC--CCSHHHHHHHHHHHHHHHHTCEEEEE-ECCSHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCcCHHHHHHHhCCCCEEEEEeCCCCCcHHHHHHHHHHHHHHHcCCEEEEE-eCCCChHHHHHHH
Confidence 477788877776552 222 233455542 234444 34455666666543321 1111111010
Q ss_pred -cccccCCceEEEeCCCCCchhHHHhhhcCCCceeeccCCCCCCcceEE
Q 021262 117 -QTSFNEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIG 164 (315)
Q Consensus 117 -~~~f~eP~lLIV~DP~~d~qaI~EAs~lnIPtIAL~DTds~~~~VD~p 164 (315)
...-+..|.||+.....+...+.++...+||+|.+ |++.+-..+++.
T Consensus 110 ~~l~~~~vdgiI~~~~~~~~~~~~~l~~~~iPvV~~-~~~~~~~~~~~V 157 (332)
T 2hsg_A 110 NNMLGKQVDGIIFMSGNVTEEHVEELKKSPVPVVLA-ASIESTNQIPSV 157 (332)
T ss_dssp HHTSCCSSCCEEECCSSCCHHHHHHHTTSSSCEEEE-SCCCSCTTSCEE
T ss_pred HHHHhCCCcEEEEecCCCCHHHHHHHHhCCCCEEEE-ccccCCCCCCEE
Confidence 01125688888887665556788888889999876 544332234443
No 145
>3kke_A LACI family transcriptional regulator; structural genomics, DNA-binding, transcription regulation, PSI-2; 2.20A {Mycobacterium smegmatis str}
Probab=20.79 E-value=1.7e+02 Score=25.20 Aligned_cols=42 Identities=12% Similarity=0.149 Sum_probs=29.8
Q ss_pred cCCceEEEeCCCCCch-hHHHhhhcCCCceeeccCCCCCCcceEEe
Q 021262 121 NEPRLLILTDPRTDHQ-PIKEAALGNIPTIAFCDTDSPMRYVDIGI 165 (315)
Q Consensus 121 ~eP~lLIV~DP~~d~q-aI~EAs~lnIPtIAL~DTds~~~~VD~pI 165 (315)
+..|-||+.....+.. .+.++.. +||+|.+ |.+.+. .+++..
T Consensus 70 ~~vdgiI~~~~~~~~~~~~~~l~~-~iPvV~i-~~~~~~-~~~~V~ 112 (303)
T 3kke_A 70 GRVDGVLLQRREDFDDDMLAAVLE-GVPAVTI-NSRVPG-RVGSVI 112 (303)
T ss_dssp CSSSEEEECCCTTCCHHHHHHHHT-TSCEEEE-SCCCTT-CCCEEE
T ss_pred CCCcEEEEecCCCCcHHHHHHHhC-CCCEEEE-CCcCCC-CCCEEE
Confidence 5678898887766666 7888888 9999876 554443 455544
No 146
>3psh_A Protein HI_1472; substrate binding protein, periplasmic binding protein, MOLY binding protein, metal transport; 1.50A {Haemophilus influenzae} PDB: 3psa_A
Probab=20.66 E-value=69 Score=28.65 Aligned_cols=33 Identities=24% Similarity=0.327 Sum_probs=24.6
Q ss_pred cCCceEEEeCCCCCchhHHHhhhcCCCceeeccC
Q 021262 121 NEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDT 154 (315)
Q Consensus 121 ~eP~lLIV~DP~~d~qaI~EAs~lnIPtIAL~DT 154 (315)
-.|||||..+- .+...+..-.+.||||+.+-..
T Consensus 83 l~PDlIi~~~~-~~~~~~~~L~~~Gipvv~~~~~ 115 (326)
T 3psh_A 83 LKPDVVFVTNY-APSEMIKQISDVNIPVVAISLR 115 (326)
T ss_dssp TCCSEEEEETT-CCHHHHHHHHTTTCCEEEECSC
T ss_pred cCCCEEEEeCC-CChHHHHHHHHcCCCEEEEecc
Confidence 68999998764 3445667778889999988443
No 147
>3tqv_A Nicotinate-nucleotide pyrophosphorylase; glycosyltransferase, transferase; 2.62A {Francisella tularensis subsp}
Probab=20.50 E-value=3.7e+02 Score=24.87 Aligned_cols=33 Identities=18% Similarity=0.105 Sum_probs=24.6
Q ss_pred CCCcEEEEccCch--hHHHHHHHHHHhCCccccCCc
Q 021262 74 NPGDIIVQSARPY--GQRAVLKFAKYTHAHAIAGRH 107 (315)
Q Consensus 74 n~~~IlfVstr~~--~q~aV~kfA~~tga~~i~grw 107 (315)
.+.++.+++||.. +-|.+.|.|-++|.- .++|+
T Consensus 132 ~g~~~~i~dTRKT~PglR~l~kyAV~~GGg-~nHR~ 166 (287)
T 3tqv_A 132 SQYKTKLLDTRKTIPGFRLAQKYAVRCGGG-FNHRI 166 (287)
T ss_dssp TTSSCEEECCSCCCTTCHHHHHHHHHHTTC-BCCCS
T ss_pred CCCCeEEEeecccCcchHHHHHHHHHhcCc-hheec
Confidence 4567889999875 678999999998765 24443
No 148
>2cc0_A Acetyl-xylan esterase; hydrolase, carbohydrate esterase; 1.6A {Streptomyces lividans} SCOP: c.6.2.3
Probab=20.20 E-value=3.3e+02 Score=22.52 Aligned_cols=77 Identities=4% Similarity=0.002 Sum_probs=46.9
Q ss_pred cHHHHHHHHHcCceecc-ccCCCCCcccceeeecCCccccCHHHHHHHHHHHHHHHHHhhCCCcEEEEccCchhHHHHHH
Q 021262 15 KEADIQMMLAAEVHLGT-KNCDFQMERYVFKRRNDGIYIINLGKTWEKLQMAARVIVAIENPGDIIVQSARPYGQRAVLK 93 (315)
Q Consensus 15 k~~~i~kLLaAgvHlG~-~~~n~~M~~YIyg~R~dGi~IINL~kT~ekL~~Aa~~I~~I~n~~~IlfVstr~~~q~aV~k 93 (315)
..+.++.|.+.|..||. +..++.|. -++..+..+.|.++.+.|..+-...-.+|-.---.....+.+
T Consensus 45 ~~~~~~~~~~~GheIg~Ht~~H~~l~------------~ls~~~~~~ei~~~~~~l~~~~G~~~~~fr~P~G~~~~~~~~ 112 (195)
T 2cc0_A 45 NPSLVRAQVDAGMWVANHSYTHPHMT------------QLGQAQMDSEISRTQQAIAGAGGGTPKLFRPPYGETNATLRS 112 (195)
T ss_dssp CHHHHHHHHHTTCEEEECCSSCCCGG------------GSCHHHHHHHHHHHHHHHHHTTSCCCSEECCGGGCCCHHHHH
T ss_pred CHHHHHHHHHCCCEEEcCCCCccccc------------cCCHHHHHHHHHHHHHHHHHHhCCCCCEEECCCCCcCHHHHH
Confidence 45789999999988994 44444332 145677788888888888876221112332111112345677
Q ss_pred HHHHhCCccc
Q 021262 94 FAKYTHAHAI 103 (315)
Q Consensus 94 fA~~tga~~i 103 (315)
.++..|-.++
T Consensus 113 ~~~~~G~~~v 122 (195)
T 2cc0_A 113 VEAKYGLTEV 122 (195)
T ss_dssp HHHHTTCEEC
T ss_pred HHHHCCCeEE
Confidence 7888886654
No 149
>3k4h_A Putative transcriptional regulator; structural genomics, protein structure INI NEW YORK structural genomix research consortium; HET: MAL; 2.80A {Bacillus cytotoxicus nvh 391-98}
Probab=20.20 E-value=94 Score=26.48 Aligned_cols=116 Identities=9% Similarity=0.062 Sum_probs=53.7
Q ss_pred HHHHHHHHHHhhCCCcEEEEccCchh------HHHHHHHHHHhCCccccCCccCCccCcccc--------ccccCCceEE
Q 021262 62 LQMAARVIVAIENPGDIIVQSARPYG------QRAVLKFAKYTHAHAIAGRHTPGTFTNQMQ--------TSFNEPRLLI 127 (315)
Q Consensus 62 L~~Aa~~I~~I~n~~~IlfVstr~~~------q~aV~kfA~~tga~~i~grw~pGtLTN~~~--------~~f~eP~lLI 127 (315)
-+.|++.+... ..++|.|++..... .+..++..+..|..........|.++.... .....|+.||
T Consensus 119 g~~a~~~L~~~-G~~~i~~i~~~~~~~~~~~R~~gf~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~ 197 (292)
T 3k4h_A 119 AREVAEYLISL-GHKQIAFIGGGSDLLVTRDRLAGMSDALKLADIVLPKEYILHFDFSRESGQQAVEELMGLQQPPTAIM 197 (292)
T ss_dssp HHHHHHHHHHT-TCCCEEEEESCTTBHHHHHHHHHHHHHHHHTTCCCCGGGEEECCSSHHHHHHHHHHHHTSSSCCSEEE
T ss_pred HHHHHHHHHHC-CCceEEEEeCcccchhHHHHHHHHHHHHHHcCCCCChheEEecCCCHHHHHHHHHHHHcCCCCCcEEE
Confidence 34455555543 34578888755321 233444455555443221112232222110 0124788888
Q ss_pred EeCCCCCchhHHHhhhcC--CC----ceeeccCC----CCCCcceEEecCCCCCcchHHHH
Q 021262 128 LTDPRTDHQPIKEAALGN--IP----TIAFCDTD----SPMRYVDIGIPANNKGKHSIGCL 178 (315)
Q Consensus 128 V~DP~~d~qaI~EAs~ln--IP----tIAL~DTd----s~~~~VD~pIP~Nnds~~SI~li 178 (315)
+.+-..-.-+++.+...| || +|++-|+. ..+.+.++-.|.-.-+..++.++
T Consensus 198 ~~~d~~a~g~~~al~~~g~~vP~di~vig~d~~~~~~~~~p~lttv~~~~~~~g~~av~~l 258 (292)
T 3k4h_A 198 ATDDLIGLGVLSALSKKGFVVPKDVSIVSFNNALLSEIASPPLSTVDVNIYQLGYEAAKAL 258 (292)
T ss_dssp ESSHHHHHHHHHHHHHTTCCTTTTCEEEEESCCHHHHHSSSCCEEEECCHHHHHHHHHHHH
T ss_pred EcChHHHHHHHHHHHHhCCCCCCeEEEEEecCcchhhccCCCceEEecCHHHHHHHHHHHH
Confidence 876332223444444444 34 78876653 23334555554443344444443
No 150
>3bbl_A Regulatory protein of LACI family; protein structure initiative II, PSI-II, NYSGXRC, transcript regulator, periplasmic binding protein; 2.35A {Chloroflexus aggregans}
Probab=20.05 E-value=1.2e+02 Score=25.99 Aligned_cols=93 Identities=14% Similarity=0.103 Sum_probs=43.3
Q ss_pred HHHHHHHHHHhhCCCcEEEEccCch---h---HHHHHHHHHHhCCccccCCccCCccCccc-----c---c-ccc-CCce
Q 021262 62 LQMAARVIVAIENPGDIIVQSARPY---G---QRAVLKFAKYTHAHAIAGRHTPGTFTNQM-----Q---T-SFN-EPRL 125 (315)
Q Consensus 62 L~~Aa~~I~~I~n~~~IlfVstr~~---~---q~aV~kfA~~tga~~i~grw~pGtLTN~~-----~---~-~f~-eP~l 125 (315)
-.+|++.+... ..++|.|++.... . .+..++..+..|..........|.++... . . ... .|+.
T Consensus 113 g~~a~~~L~~~-G~~~I~~i~~~~~~~~~~~R~~Gf~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~a 191 (287)
T 3bbl_A 113 TRQAVEYLIGR-GHRRIAILAWPEDSRVGNDRLQGYLEAMQTAQLPIETGYILRGEGTFEVGRAMTLHLLDLSPERRPTA 191 (287)
T ss_dssp HHHHHHHHHHH-TCCCEEEEECCTTCHHHHHHHHHHHHHHHHTTCCCCGGGEEECCSSHHHHHHHHHHHHTSCTTTSCSE
T ss_pred HHHHHHHHHHC-CCCeEEEEeCCcccccHHHHHHHHHHHHHHcCCCCChhhEEeCCCCHHHHHHHHHHHHhhCCCCCCcE
Confidence 34455555543 4568988865421 1 22344445555543221111123222110 0 1 112 5788
Q ss_pred EEEeCCCCCchhHHHhhhcCC--C----ceeeccCC
Q 021262 126 LILTDPRTDHQPIKEAALGNI--P----TIAFCDTD 155 (315)
Q Consensus 126 LIV~DP~~d~qaI~EAs~lnI--P----tIAL~DTd 155 (315)
||+.+-..-..+++.+...|+ | +|++-|+.
T Consensus 192 i~~~~d~~a~g~~~al~~~G~~vP~di~vig~d~~~ 227 (287)
T 3bbl_A 192 IMTLNDTMAIGAMAAARERGLTIGTDLAIIGFDDAP 227 (287)
T ss_dssp EEESSHHHHHHHHHHHHHTTCCBTTTBEEEEESCCT
T ss_pred EEECCcHHHHHHHHHHHHcCCCCCCCEEEEEECCch
Confidence 888763322234444444443 4 77876654
Done!