RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= 021262
(315 letters)
>gnl|CDD|240331 PTZ00254, PTZ00254, 40S ribosomal protein SA; Provisional.
Length = 249
Score = 379 bits (975), Expect = e-134
Identities = 139/227 (61%), Positives = 175/227 (77%)
Query: 5 TATAPRQLSQKEADIQMMLAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEKLQM 64
++ P+ L+ KE DI+ MLA + H+GTKN + M++YV+KR +G++IINL KTWEKL++
Sbjct: 1 VSSGPKVLTPKEDDIKKMLACKCHIGTKNLENAMKKYVYKRTKEGVHIINLAKTWEKLKL 60
Query: 65 AARVIVAIENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPR 124
AARVI AIENP D++V S+RPYGQRAVLKFA+YT A AIAGR TPGTFTNQ+Q F EPR
Sbjct: 61 AARVIAAIENPADVVVVSSRPYGQRAVLKFAQYTGASAIAGRFTPGTFTNQIQKKFMEPR 120
Query: 125 LLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLAR 184
LLI+TDPRTDHQ I+EA+ NIP IA CDTDSP+ YVDI IP NN+GK SI ++WLLAR
Sbjct: 121 LLIVTDPRTDHQAIREASYVNIPVIALCDTDSPLEYVDIAIPCNNRGKESIALMYWLLAR 180
Query: 185 MVLQMRGTIRPGHKWDVMVDLFFYREPEETKQAEEEETAAIDYATAE 231
VL++RGT+ +WDVMVDLFF+R+PEE ++ EE A
Sbjct: 181 EVLRLRGTLPRDEEWDVMVDLFFWRDPEEAEEKEEAAAETAGVEDAA 227
>gnl|CDD|188101 TIGR01012, Sa_S2_E_A, ribosomal protein Sa(cytosolic)/S2(archaeal).
This model describes the ribosomal protein of the
cytosol and of Archaea, homologous to S2 of bacteria. It
is designated typically as Sa in eukaryotes and Sa or S2
in the archaea. TIGR01011 describes the related protein
of organelles and bacteria [Protein synthesis, Ribosomal
proteins: synthesis and modification].
Length = 196
Score = 362 bits (931), Expect = e-128
Identities = 116/197 (58%), Positives = 154/197 (78%), Gaps = 1/197 (0%)
Query: 14 QKEADIQMMLAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEKLQMAARVIVAIE 73
+ + M LAA VH+GT+N F ME++++K R+DG+Y+++L KT E+L++AA+ +V IE
Sbjct: 1 EYLVPVDMYLAAGVHIGTQNKTFDMEKFIYKVRSDGLYVLDLRKTDERLRVAAKFLVRIE 60
Query: 74 NPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRT 133
P DI+V SAR YGQ+ VLKFAKYT A AIAGR TPGTFTN MQ SF EP ++++TDPR
Sbjct: 61 -PQDILVVSARIYGQKPVLKFAKYTGARAIAGRFTPGTFTNPMQKSFREPEVVVVTDPRA 119
Query: 134 DHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTI 193
DHQ +KEA+ IP +A CDTD+P+RYVD+ IP NNKG+ S+ ++WLLAR +L+MRGTI
Sbjct: 120 DHQAVKEASEVGIPIVALCDTDNPLRYVDLVIPTNNKGRRSLALIYWLLAREILRMRGTI 179
Query: 194 RPGHKWDVMVDLFFYRE 210
P KWDVMV+LFFYR+
Sbjct: 180 SPDQKWDVMVELFFYRD 196
>gnl|CDD|100106 cd01425, RPS2, Ribosomal protein S2 (RPS2), involved in formation
of the translation initiation complex, where it might
contact the messenger RNA and several components of the
ribosome. It has been shown that in Escherichia coli
RPS2 is essential for the binding of ribosomal protein
S1 to the 30s ribosomal subunit. In humans, most likely
in all vertebrates, and perhaps in all metazoans, the
protein also functions as the 67 kDa laminin receptor
(LAMR1 or 67LR), which is formed from a 37 kDa
precursor, and is overexpressed in many tumors. 67LR is
a cell surface receptor which interacts with a variety
of ligands, laminin-1 and others. It is assumed that the
ligand interactions are mediated via the conserved
C-terminus, which becomes extracellular as the protein
undergoes conformational changes which are not well
understood. Specifically, a conserved palindromic motif,
LMWWML, may participate in the interactions. 67LR plays
essential roles in the adhesion of cells to the basement
membrane and subsequent signalling events, and has been
linked to several diseases. Some evidence also suggests
that the precursor of 67LR, 37LRP is also present in the
nucleus in animals, where it appears associated with
histones.
Length = 193
Score = 221 bits (566), Expect = 2e-72
Identities = 72/194 (37%), Positives = 98/194 (50%), Gaps = 28/194 (14%)
Query: 22 MLAAEVHLGTKNC--DFQMERYVFKRRNDGIYIINLGKTWEKLQMAARVIVAIE-NPGDI 78
+L A VHLG K + +M+ Y++ RN GI+II+L KT EKL++A I I G I
Sbjct: 1 LLEAGVHLGHKTRRWNPKMKPYIYGERN-GIHIIDLEKTLEKLRLALNFIANIAAKGGKI 59
Query: 79 IVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTS------------------- 119
+ +P QRAV KFA+ T + + GR GT TN
Sbjct: 60 LFVGTKPQAQRAVKKFAERTGSFYVNGRWLGGTLTNWKTIRKSIKRLKKLEKEKLEKNLG 119
Query: 120 -----FNEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHS 174
F P L+I+ DPR +HQ I+EA+ IP IA DT+ +D IPAN+ S
Sbjct: 120 GIKDMFRLPDLVIVLDPRKEHQAIREASKLGIPVIAIVDTNCDPDLIDYPIPANDDSIRS 179
Query: 175 IGCLFWLLARMVLQ 188
I + WLLAR +L+
Sbjct: 180 IALILWLLARAILE 193
>gnl|CDD|235201 PRK04020, rps2P, 30S ribosomal protein S2; Provisional.
Length = 204
Score = 204 bits (521), Expect = 1e-65
Identities = 80/188 (42%), Positives = 122/188 (64%), Gaps = 1/188 (0%)
Query: 19 IQMMLAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEKLQMAARVIVAIENPGDI 78
++ LAA VH+GT+ MER++++ R DG+Y++++ KT E++++AA+ + + P I
Sbjct: 12 LEEYLAAGVHIGTQQKTKDMERFIYRVRPDGLYVLDVRKTDERIRIAAKFL-SRYEPEKI 70
Query: 79 IVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTDHQPI 138
+V S+R YGQ+ V KFA+ A AI GR PGT TN + EP ++++TDPR D Q +
Sbjct: 71 LVVSSRQYGQKPVQKFAEVVGAKAITGRFIPGTLTNPSLKGYIEPDVVVVTDPRGDAQAV 130
Query: 139 KEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTIRPGHK 198
KEA IP +A CDTD+ VD+ IP NNKG+ ++ ++WLLAR +L+ RG I+P
Sbjct: 131 KEAIEVGIPVVALCDTDNLTSNVDLVIPTNNKGRKALALVYWLLAREILRERGEIKPDED 190
Query: 199 WDVMVDLF 206
V V+ F
Sbjct: 191 LPVPVEDF 198
>gnl|CDD|215856 pfam00318, Ribosomal_S2, Ribosomal protein S2.
Length = 205
Score = 202 bits (515), Expect = 1e-64
Identities = 69/206 (33%), Positives = 94/206 (45%), Gaps = 38/206 (18%)
Query: 22 MLAAEVHLG--TKNCDFQMERYVFKRRNDGIYIINLGKTWEKLQMAARVIVAI-ENPGDI 78
+L A VH G T+ + +M+ Y++ RN GI+II+L KT EKL+ AA I I G I
Sbjct: 1 LLEAGVHFGHQTRRWNPKMKPYIYGERN-GIHIIDLEKTLEKLRKAANFIKEIAAKGGKI 59
Query: 79 IVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQ----------------------- 115
+ + Q AV KFAK T + GR GT TN
Sbjct: 60 LFVGTKKQAQEAVKKFAKRTGQFYVNGRWLGGTLTNWKTIKKSIKRLEELSKKEALKLKR 119
Query: 116 ----MQTSFNE-------PRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIG 164
++ P L+I+ DP +H IKEA+ IP IA DT+ +D
Sbjct: 120 ELEKLEKYLGGIKNMKKLPDLVIVVDPNKEHIAIKEASKLGIPVIAIVDTNCDPDLIDYP 179
Query: 165 IPANNKGKHSIGCLFWLLARMVLQMR 190
IP N+ SI + WLLAR +L+ R
Sbjct: 180 IPGNDDSIRSIALILWLLARAILEGR 205
>gnl|CDD|223130 COG0052, RpsB, Ribosomal protein S2 [Translation, ribosomal
structure and biogenesis].
Length = 252
Score = 180 bits (459), Expect = 1e-55
Identities = 71/255 (27%), Positives = 108/255 (42%), Gaps = 55/255 (21%)
Query: 17 ADIQM--MLAAEVHLGTKNC--DFQMERYVFKRRNDGIYIINLGKTWEKLQMAARVIVAI 72
A + M +L A VH G + + +M+ ++F RN GI+II+L KT E+L+ A + + I
Sbjct: 2 AVVSMKQLLEAGVHFGHQTRRWNPKMKPFIFGERN-GIHIIDLQKTLERLREAYKFLRRI 60
Query: 73 -ENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTN---------------QM 116
N G I+ + Q V +FA+ T A+ + GR G TN +M
Sbjct: 61 AANGGKILFVGTKKQAQEPVKEFAERTGAYYVNGRWLGGMLTNFKTIRKSIKRLKELEKM 120
Query: 117 QTSFNE------------------------------PRLLILTDPRTDHQPIKEAALGNI 146
+ + P +L + DPR + +KEA I
Sbjct: 121 EEDGFDGLTKKEALMLTRELEKLEKSLGGIKDMKGLPDVLFVIDPRKEKIAVKEANKLGI 180
Query: 147 PTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTIRPGHKWDVMVDLF 206
P +A DT+ VD IP N+ SI ++WLLAR +L+ RG + + D
Sbjct: 181 PVVALVDTNCDPDGVDYVIPGNDDAIRSIALIYWLLARAILEGRGGALDEEEAAIEED-- 238
Query: 207 FYREPEETKQAEEEE 221
E EE + EE
Sbjct: 239 --EEVEEFEAKEEAA 251
>gnl|CDD|130084 TIGR01011, rpsB_bact, ribosomal protein S2, bacterial type. This
model describes the bacterial, ribosomal, and
chloroplast forms of ribosomal protein S2. TIGR01012
describes the archaeal and cytosolic forms [Protein
synthesis, Ribosomal proteins: synthesis and
modification].
Length = 225
Score = 68.5 bits (168), Expect = 1e-13
Identities = 53/219 (24%), Positives = 82/219 (37%), Gaps = 50/219 (22%)
Query: 22 MLAAEVHLG--TKNCDFQMERYVFKRRNDGIYIINLGKTWEKLQMA-ARVIVAIENPGDI 78
+L A VH G T+ + +M+ ++F RN GI+II+L KT + L+ A V N G I
Sbjct: 7 LLEAGVHFGHQTRRWNPKMKPFIFGERN-GIHIIDLQKTLQLLKEAYNFVKDVAANGGKI 65
Query: 79 IVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTN---------------QMQTSFNE- 122
+ + + + + A+ + R G TN +M+
Sbjct: 66 LFVGTKKQAKEIIKEEAERCGMFYVNQRWLGGMLTNFKTIRKSIKKLKKLEKMEEDGTFD 125
Query: 123 ------------------------------PRLLILTDPRTDHQPIKEAALGNIPTIAFC 152
P LL + DP + + EA IP +A
Sbjct: 126 DLTKKEALMLSREKEKLEKSLGGIKDMKKLPDLLFVIDPVKEKIAVAEARKLGIPVVAIV 185
Query: 153 DTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRG 191
DT+ VD IP N+ SI L L+A VL+ +
Sbjct: 186 DTNCDPDLVDYPIPGNDDAIRSIRLLTNLIADAVLEGKQ 224
>gnl|CDD|177007 CHL00067, rps2, ribosomal protein S2.
Length = 230
Score = 67.6 bits (166), Expect = 3e-13
Identities = 58/233 (24%), Positives = 81/233 (34%), Gaps = 63/233 (27%)
Query: 18 DIQMMLAAEVHLG--TKNCDFQMERYVFKRRNDGIYIINLGKTWEKLQMA-ARVIVAIEN 74
+++ ML A VH G T+ + +M Y++ RN GI+IINL +T L A V A
Sbjct: 9 NLEEMLEAGVHFGHQTRKWNPKMAPYIYAERN-GIHIINLVQTARFLSEACDLVFDAASK 67
Query: 75 PGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRT- 133
+ + V A H + R G TN S + RL L D R
Sbjct: 68 GKKFLFVGTKKQAADLVASAAIRARCHYVNKRWLGGMLTNW---STTKTRLQKLRDLRME 124
Query: 134 ------DHQPIKEAA------------LG------------------------------N 145
+ P KEAA LG
Sbjct: 125 EKTGLFNRLPKKEAAILKRQLSRLEKYLGGIKYMTKLPDIVIIIDQQEEYTALRECRKLG 184
Query: 146 IPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTIRPGHK 198
IPTI+ DT+ DI IPAN+ +I + +L ++ I G
Sbjct: 185 IPTISILDTNCDPDLADIPIPANDD---AIASIKLILNKLTTA----ICEGRS 230
>gnl|CDD|235396 PRK05299, rpsB, 30S ribosomal protein S2; Provisional.
Length = 258
Score = 49.8 bits (120), Expect = 5e-07
Identities = 31/102 (30%), Positives = 44/102 (43%), Gaps = 4/102 (3%)
Query: 123 PRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLL 182
P L + DP +H +KEA IP +A DT+ VD IP N+ SI +
Sbjct: 158 PDALFVVDPNKEHIAVKEARKLGIPVVAIVDTNCDPDGVDYPIPGNDDAIRSIKLYTSKI 217
Query: 183 ARMVLQMRGTIRPGHKWDVMVDLFFYREPEETKQAEEEETAA 224
A +L+ R G + + E EE ++ EEE A
Sbjct: 218 ADAILEGRQ----GRLAEAAEEEEEEAEEEEEEEEEEEAEEA 255
Score = 40.9 bits (97), Expect = 4e-04
Identities = 25/68 (36%), Positives = 37/68 (54%), Gaps = 6/68 (8%)
Query: 17 ADIQM--MLAAEVHLG--TKNCDFQMERYVFKRRNDGIYIINLGKTWEKLQMAARVIVAI 72
A + M +L A VH G T+ + +M+ Y+F RN GI+II+L KT L A + +
Sbjct: 2 AVVSMKQLLEAGVHFGHQTRRWNPKMKPYIFGERN-GIHIIDLQKTVPMLDEAYNFVRDV 60
Query: 73 -ENPGDII 79
N G I+
Sbjct: 61 AANGGKIL 68
>gnl|CDD|237030 PRK12270, kgd, alpha-ketoglutarate decarboxylase; Reviewed.
Length = 1228
Score = 34.9 bits (81), Expect = 0.062
Identities = 18/71 (25%), Positives = 20/71 (28%)
Query: 243 PSQIADGGWAGGEVQKPIPGVPYFPEAPAATVPLGGDGWDAVPAPPMAAVTAPPMAAVTA 302
+ A A P A A P A P P AA A AA A
Sbjct: 42 AAPTAAAAAAAAAASAPAAAPAAKAPAAPAPAPPAAAAPAAPPKPAAAAAAAAAPAAPPA 101
Query: 303 PDVSAAPPPTG 313
+AAP
Sbjct: 102 AAAAAAPAAAA 112
>gnl|CDD|152353 pfam11918, DUF3436, Domain of unknown function (DUF3436). This
presumed domain is functionally uncharacterized. This
domain is found in eukaryotes. This domain is about 50
amino acids in length. This domain is found associated
with pfam03572. This domain has two conserved sequence
motifs: DPRL and SYEP.
Length = 55
Score = 30.6 bits (70), Expect = 0.11
Identities = 13/36 (36%), Positives = 20/36 (55%)
Query: 112 FTNQMQTSFNEPRLLILTDPRTDHQPIKEAALGNIP 147
T +Q+S N+PRL+I +P P + AL N+
Sbjct: 4 LTAGVQSSLNDPRLVISYEPSYLEAPQQAPALPNLT 39
>gnl|CDD|235906 PRK07003, PRK07003, DNA polymerase III subunits gamma and tau;
Validated.
Length = 830
Score = 33.7 bits (77), Expect = 0.16
Identities = 18/65 (27%), Positives = 19/65 (29%)
Query: 249 GGWAGGEVQKPIPGVPYFPEAPAATVPLGGDGWDAVPAPPMAAVTAPPMAAVTAPDVSAA 308
GG GG V + G P A AA A P AA A A
Sbjct: 365 GGAPGGGVPARVAGAVPAPGARAAAAVGASAVPAVTAVTGAAGAALAPKAAAAAAATRAE 424
Query: 309 PPPTG 313
PP
Sbjct: 425 APPAA 429
Score = 28.3 bits (63), Expect = 7.4
Identities = 21/101 (20%), Positives = 30/101 (29%), Gaps = 2/101 (1%)
Query: 212 EETKQAEEEETAAIDYATAEYNTNLTSGDQWPSQIADGGWAGGEVQKPIPGVPYFPEAPA 271
+ A + + A A + + ++ AD G A P + P A
Sbjct: 437 DRGDDAADGDAPVPAKANARASADSRCDERDAQPPADSGSASAPASDAPPDAAFEPAPRA 496
Query: 272 ATVPLGGDGWDAVPAPPMAAVT--APPMAAVTAPDVSAAPP 310
A P AA AP AA AP+ P
Sbjct: 497 AAPSAATPAAVPDARAPAAASREDAPAAAAPPAPEARPPTP 537
>gnl|CDD|220603 pfam10152, DUF2360, Predicted coiled-coil domain-containing protein
(DUF2360). This is the conserved 140 amino acid region
of a family of proteins conserved from nematodes to
humans. One C. elegans member is annotated as a
Daf-16-dependent longevity protein 1 but this could not
be confirmed. The function is unknown.
Length = 147
Score = 31.6 bits (72), Expect = 0.25
Identities = 12/54 (22%), Positives = 15/54 (27%), Gaps = 2/54 (3%)
Query: 260 IPG--VPYFPEAPAATVPLGGDGWDAVPAPPMAAVTAPPMAAVTAPDVSAAPPP 311
IPG P +G P P A +PP A + P
Sbjct: 47 IPGLEDVTVQTTPPPPASAITNGGPPPPPPARAEAASPPPPEAPAEPPAEPEPE 100
>gnl|CDD|215533 PLN02983, PLN02983, biotin carboxyl carrier protein of acetyl-CoA
carboxylase.
Length = 274
Score = 32.5 bits (74), Expect = 0.26
Identities = 18/47 (38%), Positives = 22/47 (46%), Gaps = 1/47 (2%)
Query: 267 PEAPAATVPLGGDGWDAV-PAPPMAAVTAPPMAAVTAPDVSAAPPPT 312
P PA V + A+ PA P AA AP A + P A+PPP
Sbjct: 144 PPPPAPVVMMQPPPPHAMPPASPPAAQPAPSAPASSPPPTPASPPPA 190
>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional.
Length = 3151
Score = 32.2 bits (73), Expect = 0.38
Identities = 16/65 (24%), Positives = 18/65 (27%)
Query: 249 GGWAGGEVQKPIPGVPYFPEAPAATVPLGGDGWDAVPAPPMAAVTAPPMAAVTAPDVSAA 308
G A + +P P P PA GG A P P AA A
Sbjct: 2724 GPAAARQASPALPAAPAPPAVPAGPATPGGPARPARPPTTAGPPAPAPPAAPAAGPPRRL 2783
Query: 309 PPPTG 313
P
Sbjct: 2784 TRPAV 2788
Score = 29.9 bits (67), Expect = 2.4
Identities = 16/61 (26%), Positives = 19/61 (31%), Gaps = 9/61 (14%)
Query: 261 PGVPYFPEAPAATVPLGGDGWDAVPAPPMAAVTAPPMAAVTAPD---------VSAAPPP 311
P P T P ++ + P A P AAV AP PPP
Sbjct: 2772 PAAPAAGPPRRLTRPAVASLSESRESLPSPWDPADPPAAVLAPAAALPPAASPAGPLPPP 2831
Query: 312 T 312
T
Sbjct: 2832 T 2832
Score = 29.1 bits (65), Expect = 4.0
Identities = 18/46 (39%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
Query: 269 APAATVPLGGDGWDAVPAPPMAAVTAPPMAAVTAPDVSAAPPPTGW 314
APA P+ G+G D P A PP AP+ +AAPP W
Sbjct: 254 APAPP-PVVGEGADRAPETARGATGPPPPPEAAAPNGAAAPPDGVW 298
Score = 28.8 bits (64), Expect = 5.2
Identities = 12/56 (21%), Positives = 14/56 (25%)
Query: 257 QKPIPGVPYFPEAPAATVPLGGDGWDAVPAPPMAAVTAPPMAAVTAPDVSAAPPPT 312
P P A +P G AA P + A A A P
Sbjct: 2704 PPPTPEPAPHALVSATPLPPGPAAARQASPALPAAPAPPAVPAGPATPGGPARPAR 2759
>gnl|CDD|183428 PRK12311, rpsB, 30S ribosomal protein S2/unknown domain fusion
protein; Provisional.
Length = 326
Score = 31.3 bits (71), Expect = 0.68
Identities = 18/65 (27%), Positives = 28/65 (43%)
Query: 123 PRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLL 182
P LL + D + I+EA IP A DT+ + +P N+ +I L+
Sbjct: 153 PDLLFVIDTNKEDIAIQEAQRLGIPVAAIVDTNCDPDGITYPVPGNDDAGRAIALYCDLI 212
Query: 183 ARMVL 187
AR +
Sbjct: 213 ARAAI 217
>gnl|CDD|113398 pfam04625, DEC-1_N, DEC-1 protein, N-terminal region. The
defective chorion-1 gene (dec-1) in Drosophila encodes
follicle cell proteins necessary for proper eggshell
assembly. Multiple products of the dec-1 gene are formed
by alternative RNA splicing and proteolytic processing.
Cleavage products include S80 (80 kDa) which is
incorporated into the eggshell, and further proteolysis
of S80 gives S60 (60 kDa).
Length = 407
Score = 31.3 bits (70), Expect = 0.75
Identities = 21/58 (36%), Positives = 23/58 (39%), Gaps = 8/58 (13%)
Query: 254 GEVQKPIPGVPYFPEAPAATVPLGGDGWDAVPAPPMAAVTAPPMAAVTAPDVSAAPPP 311
G +P +P P A P VPAP A APP A A D AAP P
Sbjct: 87 GSFLAQLPAMPSMPGLLGAAAP--------VPAPAPAPAAAPPAAPAPAADTPAAPIP 136
>gnl|CDD|236138 PRK07994, PRK07994, DNA polymerase III subunits gamma and tau;
Validated.
Length = 647
Score = 31.0 bits (71), Expect = 0.87
Identities = 12/54 (22%), Positives = 16/54 (29%)
Query: 258 KPIPGVPYFPEAPAATVPLGGDGWDAVPAPPMAAVTAPPMAAVTAPDVSAAPPP 311
P +P P + P A P +A AP + A AP
Sbjct: 360 HPAAPLPEPEVPPQSAAPAASAQATAAPTAAVAPPQAPAVPPPPASAPQQAPAV 413
>gnl|CDD|221459 pfam12200, DUF3597, Domain of unknown function (DUF3597). This
family of proteins is found in bacteria, eukaryotes and
viruses. Proteins in this family are typically between
126 and 281 amino acids in length. The function of this
domain is unknown. The structure of this domain has been
found to contain five helices with a long flexible loop
between helices one and two.
Length = 124
Score = 29.6 bits (67), Expect = 1.0
Identities = 15/42 (35%), Positives = 17/42 (40%), Gaps = 1/42 (2%)
Query: 266 FPEAPAATVPLGGDGWDAVPAPPMAAVTAPPMAAVTAPDVSA 307
F EA AA P PA AA A A + DV+A
Sbjct: 10 FGEAAAAA-PAPAAAPATAPAAAAAAAPAATPPAAASVDVAA 50
>gnl|CDD|233695 TIGR02037, degP_htrA_DO, periplasmic serine protease, Do/DeqQ
family. This family consists of a set proteins various
designated DegP, heat shock protein HtrA, and protease
DO. The ortholog in Pseudomonas aeruginosa is designated
MucD and is found in an operon that controls mucoid
phenotype. This family also includes the DegQ (HhoA)
paralog in E. coli which can rescue a DegP mutant, but
not the smaller DegS paralog, which cannot. Members of
this family are located in the periplasm and have
separable functions as both protease and chaperone.
Members have a trypsin domain and two copies of a PDZ
domain. This protein protects bacteria from thermal and
other stresses and may be important for the survival of
bacterial pathogens.// The chaperone function is
dominant at low temperatures, whereas the proteolytic
activity is turned on at elevated temperatures [Protein
fate, Protein folding and stabilization, Protein fate,
Degradation of proteins, peptides, and glycopeptides].
Length = 428
Score = 30.6 bits (70), Expect = 1.1
Identities = 13/30 (43%), Positives = 17/30 (56%)
Query: 126 LILTDPRTDHQPIKEAALGNIPTIAFCDTD 155
L+ DPRTD +K A N+P I D+D
Sbjct: 98 LVGKDPRTDIAVLKIDAKKNLPVIKLGDSD 127
>gnl|CDD|236382 PRK09111, PRK09111, DNA polymerase III subunits gamma and tau;
Validated.
Length = 598
Score = 30.6 bits (70), Expect = 1.2
Identities = 21/71 (29%), Positives = 27/71 (38%), Gaps = 3/71 (4%)
Query: 245 QIADGGWAGGEVQKPIPGVPYFPEAPA---ATVPLGGDGWDAVPAPPMAAVTAPPMAAVT 301
++ +G + G PG P APA A PA +AAV AA
Sbjct: 386 RLQEGPPSPGGGGGGPPGGGGAPGAPAAAAAPGAAAAAPAAGGPAAALAAVPDAAAAAAA 445
Query: 302 APDVSAAPPPT 312
P +AAP P
Sbjct: 446 PPAPAAAPQPA 456
>gnl|CDD|237802 PRK14723, flhF, flagellar biosynthesis regulator FlhF; Provisional.
Length = 767
Score = 30.2 bits (68), Expect = 1.5
Identities = 15/46 (32%), Positives = 19/46 (41%), Gaps = 3/46 (6%)
Query: 267 PEAPAATVPLGGDGWDAVPAPPMAAVTAPPMAAVTAPDVSAAPPPT 312
A AA+ PAP AA+ AP AA + +A P P
Sbjct: 48 LGAVAASAQAYAP---PAPAPLPAALVAPAPAAASIAAPAAVPAPG 90
>gnl|CDD|235777 PRK06302, PRK06302, acetyl-CoA carboxylase biotin carboxyl carrier
protein subunit; Validated.
Length = 155
Score = 29.4 bits (67), Expect = 1.6
Identities = 11/30 (36%), Positives = 13/30 (43%)
Query: 283 AVPAPPMAAVTAPPMAAVTAPDVSAAPPPT 312
A AP A P+AA A +AA P
Sbjct: 38 APVAPVAQQAAAAPVAAAPAAAAAAAAAPA 67
>gnl|CDD|237057 PRK12323, PRK12323, DNA polymerase III subunits gamma and tau;
Provisional.
Length = 700
Score = 30.2 bits (68), Expect = 1.7
Identities = 14/36 (38%), Positives = 15/36 (41%)
Query: 277 GGDGWDAVPAPPMAAVTAPPMAAVTAPDVSAAPPPT 312
G G A PA AA A P A AP +A P
Sbjct: 366 GQSGGGAGPATAAAAPVAQPAPAAAAPAAAAPAPAA 401
Score = 28.3 bits (63), Expect = 6.4
Identities = 15/51 (29%), Positives = 16/51 (31%), Gaps = 6/51 (11%)
Query: 267 PEAPAATVPLGGDGWDAVPAPPMAAV------TAPPMAAVTAPDVSAAPPP 311
PEA AA G PAP A P A +AA P
Sbjct: 430 PEALAAARQASARGPGGAPAPAPAPAAAPAAAARPAAAGPRPVAAAAAAAP 480
>gnl|CDD|185616 PTZ00436, PTZ00436, 60S ribosomal protein L19-like protein;
Provisional.
Length = 357
Score = 29.9 bits (66), Expect = 1.7
Identities = 19/50 (38%), Positives = 20/50 (40%)
Query: 261 PGVPYFPEAPAATVPLGGDGWDAVPAPPMAAVTAPPMAAVTAPDVSAAPP 310
P P A AA P A A P A APP A AP +AA P
Sbjct: 257 PAKAAAPPAKAAAPPAKAAAPPAKAAAPPAKAAAPPAKAAAAPAKAAAAP 306
Score = 29.5 bits (65), Expect = 2.3
Identities = 18/50 (36%), Positives = 19/50 (38%)
Query: 261 PGVPYFPEAPAATVPLGGDGWDAVPAPPMAAVTAPPMAAVTAPDVSAAPP 310
P A AA P A A P A APP A P +AAPP
Sbjct: 236 PAKAAAAPAKAAAAPAKAAAPPAKAAAPPAKAAAPPAKAAAPPAKAAAPP 285
Score = 28.0 bits (61), Expect = 7.3
Identities = 18/50 (36%), Positives = 19/50 (38%)
Query: 261 PGVPYFPEAPAATVPLGGDGWDAVPAPPMAAVTAPPMAAVTAPDVSAAPP 310
P P A AA P A A A A P A AP +AAPP
Sbjct: 271 PAKAAAPPAKAAAPPAKAAAPPAKAAAAPAKAAAAPAKAAAAPAKAAAPP 320
Score = 27.6 bits (60), Expect = 8.5
Identities = 18/50 (36%), Positives = 19/50 (38%)
Query: 261 PGVPYFPEAPAATVPLGGDGWDAVPAPPMAAVTAPPMAAVTAPDVSAAPP 310
P A AA P A A P A APP A P +AAPP
Sbjct: 243 PAKAAAAPAKAAAPPAKAAAPPAKAAAPPAKAAAPPAKAAAPPAKAAAPP 292
>gnl|CDD|237767 PRK14612, PRK14612, 4-diphosphocytidyl-2-C-methyl-D-erythritol
kinase; Provisional.
Length = 276
Score = 29.7 bits (67), Expect = 1.9
Identities = 15/52 (28%), Positives = 21/52 (40%)
Query: 263 VPYFPEAPAATVPLGGDGWDAVPAPPMAAVTAPPMAAVTAPDVSAAPPPTGW 314
VP+F AA G+ + PP+ V P AV+A D P +
Sbjct: 133 VPFFLLGGAAEARGVGERLTPLELPPVPLVLVNPGVAVSARDAYRWLEPEDF 184
>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau;
Validated.
Length = 824
Score = 30.0 bits (68), Expect = 2.0
Identities = 20/85 (23%), Positives = 22/85 (25%), Gaps = 7/85 (8%)
Query: 237 TSGDQWPSQIADGGWAGGEVQKPIPGVPYFPEAPAATVPLGGDGWDAVPAPPMAAVTAPP 296
GD WP++ A P P P P A P PP
Sbjct: 664 DGGDGWPAKAGGAAPAAPPPA-PAPAAPAAPAGAAPAQPAPAPAATPPAGQADDPAAQPP 722
Query: 297 MAAVTA------PDVSAAPPPTGWD 315
AA A D PP D
Sbjct: 723 QAAQGASAPSPAADDPVPLPPEPDD 747
Score = 29.6 bits (67), Expect = 2.6
Identities = 14/68 (20%), Positives = 15/68 (22%), Gaps = 1/68 (1%)
Query: 247 ADGGWAGGEVQKPIPGVPYFPEAPAATVPLGGDG-WDAVPAPPMAAVTAPPMAAVTAPDV 305
A A VP DG AA APP A A
Sbjct: 632 AAAAPAEASAAPAPGVAAPEHHPKHVAVPDASDGGDGWPAKAGGAAPAAPPPAPAPAAPA 691
Query: 306 SAAPPPTG 313
+ A
Sbjct: 692 APAGAAPA 699
Score = 29.2 bits (66), Expect = 3.1
Identities = 16/61 (26%), Positives = 17/61 (27%)
Query: 252 AGGEVQKPIPGVPYFPEAPAATVPLGGDGWDAVPAPPMAAVTAPPMAAVTAPDVSAAPPP 311
P A A P A PAP AA P A AP + AP
Sbjct: 433 PAPAPAPAPPSPAGNAPAGGAPSPPPAAAPSAQPAPAPAAAPEPTAAPAPAPPAAPAPAA 492
Query: 312 T 312
Sbjct: 493 A 493
Score = 29.2 bits (66), Expect = 3.3
Identities = 15/75 (20%), Positives = 20/75 (26%)
Query: 241 QWPSQIADGGWAGGEVQKPIPGVPYFPEAPAATVPLGGDGWDAVPAPPMAAVTAPPMAAV 300
Q P P+P P + P PAP A APP +
Sbjct: 720 QPPQAAQGASAPSPAADDPVPLPPEPDDPPDPAGAPAQPPPPPAPAPAAAPAAAPPPSPP 779
Query: 301 TAPDVSAAPPPTGWD 315
+ + A D
Sbjct: 780 SEEEEMAEDDAPSMD 794
Score = 28.8 bits (65), Expect = 4.5
Identities = 17/69 (24%), Positives = 17/69 (24%), Gaps = 3/69 (4%)
Query: 249 GGWAGGEVQKPIPGVPYFPEAPAATVPLGGDGWDAVPAPPMAAVTAPPMAA---VTAPDV 305
G P P A A P A A P A P A AP
Sbjct: 384 RLGVAGGAGAPAAAAPSAAAAAPAAAPAPAAAAPAAAAAPAPAAAPQPAPAPAPAPAPPS 443
Query: 306 SAAPPPTGW 314
A P G
Sbjct: 444 PAGNAPAGG 452
>gnl|CDD|221598 pfam12484, PE_PPE_C, Polymorphic PE/PPE proteins C terminal. This
domain family is found in bacteria, and is approximately
90 amino acids in length. The family is found in
association with pfam00823. There is a conserved SVP
sequence motif. There is a single completely conserved
residue W that may be functionally important. The
proteins in this family are PE/PPE proteins implicated
in immunostimulation and virulence.
Length = 81
Score = 27.7 bits (62), Expect = 2.3
Identities = 14/45 (31%), Positives = 15/45 (33%), Gaps = 1/45 (2%)
Query: 267 PEAPAATVPLGGDGWDAVPAPPMAAVTAPPMAAVTAPDVSAAPPP 311
P AA L G G A AV P M A +A P
Sbjct: 25 PAVSAAAAALPGAGVAAAAEAAAGAVL-PGMPGAAAAGRGSAGFP 68
>gnl|CDD|217552 pfam03429, MSP1b, Major surface protein 1B. The major surface
protein (MSP1) of the cattle pathogen Anaplasma is a
heterodimer comprised of MSP1a and MSP1b. This family is
the MSP1b chain. There MSP1 proteins are putative
adhesins for bovine erythrocytes.
Length = 726
Score = 29.3 bits (65), Expect = 3.2
Identities = 17/47 (36%), Positives = 26/47 (55%), Gaps = 2/47 (4%)
Query: 211 PEETKQAEEEETAAIDYATAEYNTNLTSGDQWPSQIADGGWAGGEVQ 257
PEE +QA E A++ A+A+ + S +Q +QIA GG + Q
Sbjct: 676 PEELEQAAEGLATAVNEASAD--GKIQSLNQQETQIAQGGQHAAQQQ 720
>gnl|CDD|219321 pfam07174, FAP, Fibronectin-attachment protein (FAP). This family
contains bacterial fibronectin-attachment proteins
(FAP). Family members are rich in alanine and proline,
are approximately 300 long, and seem to be restricted to
mycobacteria. These proteins contain a
fibronectin-binding motif that allows mycobacteria to
bind to fibronectin in the extracellular matrix.
Length = 297
Score = 29.1 bits (65), Expect = 3.2
Identities = 19/55 (34%), Positives = 20/55 (36%)
Query: 259 PIPGVPYFPEAPAATVPLGGDGWDAVPAPPMAAVTAPPMAAVTAPDVSAAPPPTG 313
P P P P PAA D +A P PP A APP V P G
Sbjct: 55 PAPAAPPPPPPPAAPPAPQPDDPNAAPPPPPADPNAPPPPPVDPNAPPPPAPEPG 109
>gnl|CDD|237782 PRK14666, uvrC, excinuclease ABC subunit C; Provisional.
Length = 694
Score = 29.1 bits (65), Expect = 3.2
Identities = 14/47 (29%), Positives = 17/47 (36%)
Query: 267 PEAPAATVPLGGDGWDAVPAPPMAAVTAPPMAAVTAPDVSAAPPPTG 313
P A L D AP ++ P+AA T D S TG
Sbjct: 329 PTAVCTDAGLLPDTPLLPDAPEGSSDPVVPVAAATPVDASLPDVRTG 375
>gnl|CDD|237011 PRK11892, PRK11892, pyruvate dehydrogenase subunit beta;
Provisional.
Length = 464
Score = 29.1 bits (66), Expect = 3.5
Identities = 13/41 (31%), Positives = 14/41 (34%)
Query: 267 PEAPAATVPLGGDGWDAVPAPPMAAVTAPPMAAVTAPDVSA 307
EA AA AP AA AP PD+ A
Sbjct: 95 AEAAAAAPAAAAAAAAKKAAPAPAAPAAPAAEVAADPDIPA 135
>gnl|CDD|237062 PRK12328, nusA, transcription elongation factor NusA; Provisional.
Length = 374
Score = 28.8 bits (65), Expect = 3.8
Identities = 21/65 (32%), Positives = 35/65 (53%), Gaps = 11/65 (16%)
Query: 40 RYVFKRRNDGIYIINLGKTWEKLQMAARVIVAIENP----GDIIVQ-SARPYGQRAVLKF 94
+ V +N+GI I L +T K A ++ +E P G++I+ SAR G+RA K
Sbjct: 188 KRVKIDKNNGIL-IELSRTSPKFLEA---LLELEVPEIKDGEVIIIHSARIPGERA--KV 241
Query: 95 AKYTH 99
A +++
Sbjct: 242 ALFSN 246
>gnl|CDD|237874 PRK14971, PRK14971, DNA polymerase III subunits gamma and tau;
Provisional.
Length = 614
Score = 29.0 bits (65), Expect = 4.0
Identities = 17/65 (26%), Positives = 25/65 (38%), Gaps = 7/65 (10%)
Query: 247 ADGGWAGGEVQKPIPGVPYFPEAPAATVPLGGDGWDAVPAPPMAAVTAPPMAAVTAPDVS 306
A GG + KP+ P P+A A P+P ++ A P A +A +
Sbjct: 369 ASGGRGPKQHIKPVFTQPAAAPQPSAAA-------AASPSPSQSSAAAQPSAPQSATQPA 421
Query: 307 AAPPP 311
PP
Sbjct: 422 GTPPT 426
>gnl|CDD|173500 PTZ00264, PTZ00264, circumsporozoite-related antigen; Provisional.
Length = 148
Score = 28.0 bits (62), Expect = 4.4
Identities = 15/36 (41%), Positives = 16/36 (44%), Gaps = 2/36 (5%)
Query: 277 GGDGWDAVPAPPMAAVTAPPMAA--VTAPDVSAAPP 310
GG G DA P PP A VTA DV+ P
Sbjct: 112 GGKGGDAAPPEADPESNGPPNAGPQVTAQDVTPEQP 147
>gnl|CDD|237449 PRK13616, PRK13616, lipoprotein LpqB; Provisional.
Length = 591
Score = 28.8 bits (65), Expect = 4.6
Identities = 14/34 (41%), Positives = 17/34 (50%), Gaps = 4/34 (11%)
Query: 267 PEAPAATVPLGGDGWDAVPA----PPMAAVTAPP 296
PE P V L G DA+P+ P+ AV A P
Sbjct: 517 PEHPVWYVNLDGSNSDALPSRNLSAPVVAVAASP 550
>gnl|CDD|236712 PRK10547, PRK10547, chemotaxis protein CheA; Provisional.
Length = 670
Score = 28.5 bits (64), Expect = 6.1
Identities = 7/46 (15%), Positives = 11/46 (23%), Gaps = 1/46 (2%)
Query: 266 FPEAPAATVPLGGDGWDAVPAPPMAAVTAPPMAAVTAPDVSAAPPP 311
F A AA + + V P P + +
Sbjct: 224 FETAVAAPQEKAEETTEVVEVSP-KISVPPVLKLAAEQAPAGRVER 268
>gnl|CDD|237871 PRK14965, PRK14965, DNA polymerase III subunits gamma and tau;
Provisional.
Length = 576
Score = 28.2 bits (63), Expect = 6.3
Identities = 21/80 (26%), Positives = 22/80 (27%), Gaps = 8/80 (10%)
Query: 236 LTSGDQWPSQIADGGWAGGEVQKPIPGVPYFPEAPAATVPLGGDGWDAVPAPPMAAVTAP 295
L G P A G P P P P A P PAP A AP
Sbjct: 377 LERGAPAPPSAAWGAPTPAAPAAPPPAAA--PPVPPAA-PARPAAARPAPAPAPPAAAAP 433
Query: 296 PMAAVTAPDVSAAPPPTGWD 315
P A A + D
Sbjct: 434 P-----ARSADPAAAASAGD 448
>gnl|CDD|234022 TIGR02813, omega_3_PfaA, polyketide-type polyunsaturated fatty acid
synthase PfaA. Members of the seed for this alignment
are involved in omega-3 polyunsaturated fatty acid
biosynthesis, such as the protein PfaA from the
eicosapentaenoic acid biosynthesis operon in
Photobacterium profundum strain SS9. PfaA is encoded
together with PfaB, PfaC, and PfaD, and the functions of
the individual polypeptides have not yet been described.
More distant homologs of PfaA, also included with the
reach of this model, appear to be involved in
polyketide-like biosynthetic mechanisms of
polyunsaturated fatty acid biosynthesis, an alternative
to the more familiar iterated mechanism of chain
extension and desaturation, and in most cases are encoded
near genes for homologs of PfaB, PfaC, and/or PfaD.
Length = 2582
Score = 28.4 bits (63), Expect = 6.4
Identities = 15/52 (28%), Positives = 18/52 (34%), Gaps = 5/52 (9%)
Query: 256 VQKPIPGVPYFPEAPAATVPLGGDGWDAVPAPPMAAVTAPPMAAVTAPDVSA 307
VQ I P P PA P AP + TA MA V ++
Sbjct: 1139 VQVTISVAPAAPVLPAVVSPPV-----VSAAPAQSVATAVAMAPVAEVPIAV 1185
>gnl|CDD|236792 PRK10905, PRK10905, cell division protein DamX; Validated.
Length = 328
Score = 28.0 bits (62), Expect = 6.7
Identities = 16/56 (28%), Positives = 20/56 (35%), Gaps = 2/56 (3%)
Query: 258 KPIPGVPYFPEAPAATVPLGGDGWDAVPAPPMAAVTAPPMAAVTAPDVSAAPPPTG 313
KP+ P E A + PAP A TAP +P + A P G
Sbjct: 177 KPVAQTPKRTEPAAPVASTKAPAATSTPAPKETATTAP--VQTASPAQTTATPAAG 230
>gnl|CDD|221581 pfam12446, DUF3682, Protein of unknown function (DUF3682). This
domain family is found in eukaryotes, and is typically
between 125 and 136 amino acids in length.
Length = 133
Score = 27.1 bits (60), Expect = 6.7
Identities = 14/41 (34%), Positives = 16/41 (39%), Gaps = 2/41 (4%)
Query: 275 PLGGDGWDAVPAPPMAAVTAPPMAAVTAPDVSAAPPPTGWD 315
GGDG V + A APP P+ AP G D
Sbjct: 1 STGGDGTGGVSSGSSAP--APPAGPGPGPNAPPAPAAPGVD 39
>gnl|CDD|227665 COG5373, COG5373, Predicted membrane protein [Function unknown].
Length = 931
Score = 28.3 bits (63), Expect = 6.8
Identities = 18/71 (25%), Positives = 24/71 (33%), Gaps = 5/71 (7%)
Query: 243 PSQIADGGWAGGEVQKPIPGVPYFPEAPAATVPLGGD---GWDAVPAPPMAAVTAPPMAA 299
S +A+G A G V K + A AA +P + + P P A A
Sbjct: 36 RSLVAEG--AAGPVAKAAEQMAAPEAAEAAPLPAAAESIASPEVPPPVPPAPAQEGEAPA 93
Query: 300 VTAPDVSAAPP 310
P AP
Sbjct: 94 AEQPSAVPAPS 104
>gnl|CDD|237865 PRK14951, PRK14951, DNA polymerase III subunits gamma and tau;
Provisional.
Length = 618
Score = 28.1 bits (63), Expect = 7.1
Identities = 14/56 (25%), Positives = 15/56 (26%)
Query: 258 KPIPGVPYFPEAPAATVPLGGDGWDAVPAPPMAAVTAPPMAAVTAPDVSAAPPPTG 313
KP A T A AA P AA A + A PP
Sbjct: 365 KPAAAAEAAAPAEKKTPARPEAAAPAAAPVAQAAAAPAPAAAPAAAASAPAAPPAA 420
Score = 27.8 bits (62), Expect = 9.6
Identities = 18/53 (33%), Positives = 20/53 (37%)
Query: 259 PIPGVPYFPEAPAATVPLGGDGWDAVPAPPMAAVTAPPMAAVTAPDVSAAPPP 311
P P A A P V AP AA A P AA A ++ APP
Sbjct: 401 PAPAAAPAAAASAPAAPPAAAPPAPVAAPAAAAPAAAPAAAPAAVALAPAPPA 453
Score = 27.8 bits (62), Expect = 9.8
Identities = 13/45 (28%), Positives = 15/45 (33%), Gaps = 8/45 (17%)
Query: 267 PEAPAATVPLGGDGWDAVPAPPMAAVTAPPMAAVTAPDVSAAPPP 311
P A AA P PA AA + P A A + P
Sbjct: 393 PVAQAAAAP--------APAAAPAAAASAPAAPPAAAPPAPVAAP 429
>gnl|CDD|226463 COG3954, PrkB, Phosphoribulokinase [Energy production and
conversion].
Length = 289
Score = 27.9 bits (62), Expect = 7.1
Identities = 14/42 (33%), Positives = 19/42 (45%), Gaps = 2/42 (4%)
Query: 74 NPGDIIVQSARPYGQRAVLKFAKYTH--AHAIAGRHTPGTFT 113
N ++ Q+ YGQ + KY H A+ PGTFT
Sbjct: 74 NDFGLLEQTFIEYGQSGKGRSRKYLHTYDEAVPWNQVPGTFT 115
>gnl|CDD|235915 PRK07042, PRK07042, amidase; Provisional.
Length = 464
Score = 28.0 bits (63), Expect = 7.2
Identities = 23/52 (44%), Positives = 25/52 (48%), Gaps = 8/52 (15%)
Query: 251 WAGGEVQKPIPGVPYFPEAPAAT----VPLGGDGWDAVPAPPMAAVTAPPMA 298
WA GE P+ GVP + AT VPLG A PP AA APP A
Sbjct: 63 WAKGEPLGPLDGVPVTIKENIATRGVPVPLGT---AATDLPP-AAADAPPAA 110
>gnl|CDD|222843 PHA02030, PHA02030, hypothetical protein.
Length = 336
Score = 28.0 bits (62), Expect = 7.6
Identities = 16/53 (30%), Positives = 17/53 (32%), Gaps = 3/53 (5%)
Query: 259 PIPGVPYFPEAPAATVPL--GGDGWDAVPAPPMAAVTAPPMAAVTAPDVSAAP 309
P VP A A P +P P A A P AA P V P
Sbjct: 280 AAPAVPAAAAAVAQAAPSVPQVPNVAVLPDVPQVAPVAAP-AAPEVPAVPVVP 331
>gnl|CDD|218621 pfam05518, Totivirus_coat, Totivirus coat protein.
Length = 753
Score = 27.8 bits (62), Expect = 8.2
Identities = 14/45 (31%), Positives = 17/45 (37%), Gaps = 1/45 (2%)
Query: 267 PEAPAATVPLGGDGWDAVPAPPMAAVTAPPMAAVTAPDVSAAPPP 311
P+AP P GG G P AA P + + APP
Sbjct: 695 PQAPRPGGPPGGGGGLPPPPDLPAAAGPAPCGS-SLIASPTAPPE 738
>gnl|CDD|166942 PRK00404, tatB, sec-independent translocase; Provisional.
Length = 141
Score = 27.1 bits (60), Expect = 8.8
Identities = 17/54 (31%), Positives = 20/54 (37%), Gaps = 2/54 (3%)
Query: 258 KPIPGVPYFPEAPAATVPLGGDGWDAVPAPPMAAVTAPPMAAVTAPDVSAAPPP 311
P P P ++PA VP + PA P A A P A P PP
Sbjct: 87 PPEPVTPPTAQSPAPAVPTPPP--TSTPAVPPAPAAAVPAPAAAPPPSDPPQPP 138
>gnl|CDD|236766 PRK10811, rne, ribonuclease E; Reviewed.
Length = 1068
Score = 27.7 bits (62), Expect = 10.0
Identities = 16/45 (35%), Positives = 19/45 (42%), Gaps = 6/45 (13%)
Query: 267 PEAPA-ATVPLGGDGWDAVPAPPMAAVTAPPMAAVTAPDVSAAPP 310
PE PA AT + VP P A A P+ A +A PP
Sbjct: 524 PEQPALATFAM-----PDVPPAPTPAEPAAPVVAAAPKAAAATPP 563
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.318 0.134 0.418
Gapped
Lambda K H
0.267 0.0701 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 16,549,089
Number of extensions: 1608902
Number of successful extensions: 2512
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2153
Number of HSP's successfully gapped: 177
Length of query: 315
Length of database: 10,937,602
Length adjustment: 97
Effective length of query: 218
Effective length of database: 6,635,264
Effective search space: 1446487552
Effective search space used: 1446487552
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 59 (26.6 bits)