RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= 021262
(315 letters)
>3u5c_A 40S ribosomal protein S0-A; translation, ribosome, ribosomal,
ribosomal R ribosomal protein, eukaryotic ribosome,
RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB:
3izb_A 3o30_A 3o2z_A 3u5g_A 3jyv_B* 1s1h_B
Length = 252
Score = 317 bits (813), Expect = e-109
Identities = 123/245 (50%), Positives = 159/245 (64%), Gaps = 5/245 (2%)
Query: 9 PRQLSQKEADIQMMLAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEKLQMAARV 68
P D Q++LAA HLG +N E YVF R DG+++IN+GKTWEKL +AAR+
Sbjct: 4 PATFDLTPEDAQLLLAANTHLGARNVQVHQEPYVFNARPDGVHVINVGKTWEKLVLAARI 63
Query: 69 IVAIENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLIL 128
I AI NP D++ S+R +GQRAVLKFA +T A IAGR TPG+FTN + SF EPRL+I+
Sbjct: 64 IAAIPNPEDVVAISSRTFGQRAVLKFAAHTGATPIAGRFTPGSFTNYITRSFKEPRLVIV 123
Query: 129 TDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQ 188
TDPR+D Q IKEA+ NIP IA D DSP +VD+ IP NN+GKHSIG +++LLAR VL+
Sbjct: 124 TDPRSDAQAIKEASYVNIPVIALTDLDSPSEFVDVAIPCNNRGKHSIGLIWYLLAREVLR 183
Query: 189 MRGTIRP-GHKWDVMVDLFFYREPEETKQAEEEET----AAIDYATAEYNTNLTSGDQWP 243
+RG + W +M DL+FYR+PEE +Q EE A + A E +W
Sbjct: 184 LRGALVDRTQPWSIMPDLYFYRDPEEVEQQVAEEATTEEAGEEEAKEEVTEEQAEATEWA 243
Query: 244 SQIAD 248
+ AD
Sbjct: 244 EENAD 248
>2xzm_B RPS0E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB:
2xzn_B
Length = 241
Score = 313 bits (803), Expect = e-108
Identities = 101/241 (41%), Positives = 151/241 (62%), Gaps = 3/241 (1%)
Query: 12 LSQKEADIQMMLAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEKLQMAARVIVA 71
+K+ DI+ +LA+ H T N + QM+RY+ + +GI+ IN+ +TW+K+++AARVI A
Sbjct: 3 TQRKQDDIKRLLASNCHQATINLNNQMKRYISHKGVNGIHYINIEETWQKIKLAARVIAA 62
Query: 72 IENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAG-RHTPGTFTNQMQTSFNEPRLLILTD 130
+++P D++V +R YGQRA +KFA YTH + + R TPGT TN + EPR+LI+TD
Sbjct: 63 VQHPEDVMVVCSRIYGQRAAIKFAGYTHCKSTSSSRWTPGTLTNYQTLKYEEPRVLIVTD 122
Query: 131 PRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMR 190
PR+D Q IKEA+ NIP IA CD+DSP+ YVD+ IP NN+ SI ++W++AR V +R
Sbjct: 123 PRSDFQAIKEASYVNIPVIALCDSDSPLAYVDVVIPCNNRSTESISMIYWMIAREVKILR 182
Query: 191 GTIRPGHKWDVMVDLFFYREPEETKQAEEEETAAIDYATAEYNTNLTSGDQWPSQIADGG 250
G + +W+VMVDLF+++ +Q E EE + AE + +
Sbjct: 183 GELSKDEEWEVMVDLFYHKTLPTAEQKEAEEEEGAE--GAEEKVAEVKEGEAEQNTDNKN 240
Query: 251 W 251
W
Sbjct: 241 W 241
>3iz6_A 40S ribosomal protein SA (S2P); eukaryotic ribosome,homology
modeling,de novo modeling,ribos proteins,novel ribosomal
proteins, ribosome; 5.50A {Triticum aestivum}
Length = 305
Score = 307 bits (787), Expect = e-104
Identities = 216/315 (68%), Positives = 230/315 (73%), Gaps = 13/315 (4%)
Query: 1 MATGTATAPRQLSQKEADIQMMLAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWE 60
MA A R LSQ+E DIQMMLAA+VHLGTKNCDFQMERYV+KRR DGIYIINLGKTWE
Sbjct: 1 MAAEGGAAARALSQREQDIQMMLAADVHLGTKNCDFQMERYVYKRRTDGIYIINLGKTWE 60
Query: 61 KLQMAARVIVAIENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSF 120
KLQ+AARVIVAIENP DIIVQSARPYGQRAVLKFA+YT AHAIAGRHTPGTFTNQ+QTSF
Sbjct: 61 KLQLAARVIVAIENPQDIIVQSARPYGQRAVLKFAQYTGAHAIAGRHTPGTFTNQLQTSF 120
Query: 121 NEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFW 180
+EPRLLILTDPRTDHQPIKE+ALGNIPTIAFCDTDSPMRYVDIGIPANNKGK SIGCLFW
Sbjct: 121 SEPRLLILTDPRTDHQPIKESALGNIPTIAFCDTDSPMRYVDIGIPANNKGKQSIGCLFW 180
Query: 181 LLARMVLQMRGTIRPGHKWDVMVDLFFYREPEETKQAEEEETA-AIDYATAEYNTNLTSG 239
LLARMVLQMRGTI PGHKWDVMVDLFFYR+PEE K+ EEEE A A +
Sbjct: 181 LLARMVLQMRGTILPGHKWDVMVDLFFYRDPEEAKEQEEEEAALVAPDYGAVAEYAAPAA 240
Query: 240 DQWPSQIADGGWAGGEVQKPIPGVPYFPEAPAATVPLGGDGWDAVPAPPMAAVTAPPMAA 299
D W + A G + APA GWD AP P
Sbjct: 241 DTWGGEWGTDAAAQPAAIPAQAGADW-TAAPAP----AAGGWDTAAAP-------APGWE 288
Query: 300 VTAPDVSAAPPPTGW 314
+ V AA P W
Sbjct: 289 QGSAPVPAAAPTPNW 303
>3bch_A 40S ribosomal protein SA; laminin receptor, P40 ribosomal protein,
acetylation, cytoplasm, phosphorylation, polymorphism;
2.15A {Homo sapiens}
Length = 253
Score = 304 bits (779), Expect = e-104
Identities = 140/224 (62%), Positives = 172/224 (76%), Gaps = 3/224 (1%)
Query: 1 MATGTATAPRQLSQKEADIQMMLAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWE 60
MA+G++ A L KE D+ LAA HLG N DFQME+Y++KR++DGIYIINL +TWE
Sbjct: 30 MASGSSGALDVLQMKEEDVLKFLAAGTHLGGTNLDFQMEQYIYKRKSDGIYIINLKRTWE 89
Query: 61 KLQMAARVIVAIENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSF 120
KL +AAR IVAIENP D+ V S+R GQRAVLKFA T A IAGR TPGTFTNQ+Q +F
Sbjct: 90 KLLLAARAIVAIENPADVSVISSRNTGQRAVLKFAAATGATPIAGRFTPGTFTNQIQAAF 149
Query: 121 NEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFW 180
EPRLL++TDPR DHQP+ EA+ N+PTIA C+TDSP+RYVDI IP NNKG HS+G ++W
Sbjct: 150 REPRLLVVTDPRADHQPLTEASYVNLPTIALCNTDSPLRYVDIAIPCNNKGAHSVGLMWW 209
Query: 181 LLARMVLQMRGTIRPGHKWDVMVDLFFYREPEETK---QAEEEE 221
+LAR VL+MRGTI H W+VM DL+FYR+PEE + QA E+
Sbjct: 210 MLAREVLRMRGTISREHPWEVMPDLYFYRDPEEIEKEEQAAAEK 253
>2zkq_b 40S ribosomal protein SA; protein-RNA complex, 40S ribosomal
subunit, ribosomal protein/RNA complex; 8.70A {Canis
familiaris}
Length = 295
Score = 298 bits (763), Expect = e-101
Identities = 145/282 (51%), Positives = 184/282 (65%), Gaps = 3/282 (1%)
Query: 8 APRQLSQKEADIQMMLAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEKLQMAAR 67
A L KE D+ LAA HLG N DFQME+Y++KR++DGIYIINL +TWEKL +AAR
Sbjct: 4 ALDVLQMKEEDVLKFLAAGTHLGGTNLDFQMEQYIYKRKSDGIYIINLKRTWEKLLLAAR 63
Query: 68 VIVAIENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLI 127
IVAIENP D+ V S+R GQRAVLKFA T A IAGR TPGTFTNQ+Q +F EPRLL+
Sbjct: 64 AIVAIENPADVSVISSRNTGQRAVLKFAAATGATPIAGRFTPGTFTNQIQAAFREPRLLV 123
Query: 128 LTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVL 187
+TDPR DHQP+ EA+ N+PTIA C+TDSP+RYVDI IP NNKG HS+G ++W+LAR VL
Sbjct: 124 VTDPRADHQPLTEASYVNLPTIALCNTDSPLRYVDIAIPCNNKGAHSVGLMWWMLAREVL 183
Query: 188 QMRGTIRPGHKWDVMVDLFFYREPEET-KQAEEEETAAIDYATAEYNTNLTSGDQWPSQI 246
+MRGTI H W+VM DL+FYR+PEE K+ + A+ + + + +Q
Sbjct: 184 RMRGTISREHPWEVMPDLYFYRDPEEIEKEEQAAAEKAVTKEEFQGEWTAPAPEFTAAQP 243
Query: 247 ADGGWAGGEVQKPIPGVPYFPEAPAATVPLGGDGWDAVPAPP 288
W+ G +P + E +A + W A P
Sbjct: 244 EVADWSEGVQVPSVPIQQFPTEDWSA--QPSTEDWSAAPTAQ 283
>1vi6_A 30S ribosomal protein S2P; structural genomics, ribosome; 1.95A
{Archaeoglobus fulgidus} SCOP: c.23.15.1 PDB: 1vi5_A
Length = 208
Score = 293 bits (753), Expect = e-101
Identities = 66/188 (35%), Positives = 109/188 (57%), Gaps = 1/188 (0%)
Query: 18 DIQMMLAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEKLQMAARVIVAIENPGD 77
LAA VH+GT+ M++++FK R DG+Y++++ K E++++AA+ + E P
Sbjct: 12 PPDDYLAAGVHIGTQIKTGDMKKFIFKVRQDGLYVLDIRKLDERIRVAAKFLSRYE-PSK 70
Query: 78 IIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTDHQP 137
I++ +AR Y + V F+K + I GR PGT TN M + + EP ++ + DP D Q
Sbjct: 71 ILLVAARQYAHKPVQMFSKVVGSDYIVGRFIPGTLTNPMLSEYREPEVVFVNDPAIDKQA 130
Query: 138 IKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTIRPGH 197
+ EA IP +A CD+++ VD+ IP NNKG+ ++ ++WLLAR + ++RG
Sbjct: 131 VSEATAVGIPVVALCDSNNSSADVDLVIPTNNKGRRALAIVYWLLAREIAKIRGQDFTYS 190
Query: 198 KWDVMVDL 205
D +L
Sbjct: 191 IEDFEAEL 198
>3bbn_B Ribosomal protein S2; small ribosomal subunit, spinach
chloroplast ribosome, ribonucleoprotein particle,
macromolecular complex; 9.40A {Spinacea oleracea} SCOP:
i.1.1.1
Length = 231
Score = 45.6 bits (109), Expect = 7e-06
Identities = 18/56 (32%), Positives = 30/56 (53%), Gaps = 5/56 (8%)
Query: 18 DIQM--MLAAEVHLG--TKNCDFQMERYVFKRRNDGIYIINLGKTWEKLQMAARVI 69
+I + M+ A VH G T+ + +M Y+ + GI+IINL +T L A ++
Sbjct: 3 NINLEEMMEAGVHFGHGTRKWNPRMSPYISAKCK-GIHIINLTRTARFLSEACDLV 57
Score = 42.1 bits (100), Expect = 8e-05
Identities = 16/46 (34%), Positives = 25/46 (54%)
Query: 123 PRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPAN 168
P ++I+ D + ++ ++E IPTI DT+ DI IPAN
Sbjct: 158 PDIVIIVDQQEEYTALRECITLGIPTICLIDTNCNPDLADISIPAN 203
>3r8n_B 30S ribosomal protein S2; protein biosynthesis, RNA, tRNA,
transfer RNA, 16S ribosomal subunit, RRF; 3.00A
{Escherichia coli} PDB: 2ykr_B 3fih_B* 2wwl_B 3oar_B
3oaq_B 3ofb_B 3ofa_B 3ofp_B 3ofx_B 3ofy_B 3ofo_B 3r8o_B
4a2i_B 3i1m_B 1vs7_B* 3e1a_B 3e1c_B 1vs5_B 3i1o_B
3i1q_B ...
Length = 218
Score = 44.0 bits (105), Expect = 2e-05
Identities = 18/50 (36%), Positives = 27/50 (54%), Gaps = 3/50 (6%)
Query: 22 MLAAEVHLG--TKNCDFQMERYVFKRRNDGIYIINLGKTWEKLQMAARVI 69
ML A VH G T+ + +M+ ++F RN ++IINL KT A +
Sbjct: 1 MLKAGVHFGHQTRYWNPKMKPFIFGARN-KVHIINLEKTVPMFNEALAEL 49
Score = 37.1 bits (87), Expect = 0.003
Identities = 19/46 (41%), Positives = 22/46 (47%)
Query: 123 PRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPAN 168
P L + D +H IKEA IP A DT+S VD IP N
Sbjct: 150 PDALFVIDADHEHIAIKEANNLGIPVFAIVDTNSDPDGVDFVIPGN 195
>2vqe_B 30S ribosomal protein S2; tRNA-binding, rRNA-binding,
metal-binding, zinc-finger, translation; HET: TM2 PAR;
2.5A {Thermus thermophilus} SCOP: c.23.15.1 PDB:
1gix_E* 1hnw_B* 1hnx_B* 1hnz_B* 1hr0_B 1ibk_B* 1ibl_B*
1ibm_B 1j5e_B 1jgo_E* 1jgp_E* 1jgq_E* 1ml5_E* 1n32_B*
1n33_B* 1n34_B 1n36_B 1xmo_B* 1xmq_B* 1xnq_B* ...
Length = 256
Score = 43.7 bits (104), Expect = 3e-05
Identities = 22/57 (38%), Positives = 33/57 (57%), Gaps = 5/57 (8%)
Query: 17 ADIQM--MLAAEVHLG--TKNCDFQMERYVFKRRNDGIYIINLGKTWEKLQMAARVI 69
+I + +L A VH G K + + RY++ RN GI+II+L KT E+L+ R I
Sbjct: 3 VEITVKELLEAGVHFGHERKRWNPKFARYIYAERN-GIHIIDLQKTMEELERTFRFI 58
Score = 42.2 bits (100), Expect = 1e-04
Identities = 30/101 (29%), Positives = 43/101 (42%), Gaps = 3/101 (2%)
Query: 123 PRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLL 182
P + + DP + ++EA IP IA DTDS VD IP N+ SI +
Sbjct: 159 PDAIFVVDPTKEAIAVREARKLFIPVIALADTDSDPDLVDYIIPGNDDAIRSIQLILSRA 218
Query: 183 ARMVLQMRGTIRPGHKWDVMVDLFFYREPEETKQAEEEETA 223
+++Q RG + +V E ET + E E A
Sbjct: 219 VDLIIQARGGVVEPSPSYALVQE---AEATETPEGESEVEA 256
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 43.1 bits (101), Expect = 9e-05
Identities = 48/251 (19%), Positives = 71/251 (28%), Gaps = 100/251 (39%)
Query: 38 MERY----VFKR---RNDGIYIINLGKTWEKLQMAARVIVAI--ENPGDIIVQSARPYGQ 88
M+ Y + R D + G + I+ I NP ++ + G+
Sbjct: 1633 MDLYKTSKAAQDVWNRADNHFKDTYGFS----------ILDIVINNPVNLTIHFGGEKGK 1682
Query: 89 RAVLKFAKYTHAHAIAGR-HTPGTF--TNQMQTS--FNEPR-LLILTDPRTDHQP----- 137
R ++ + G+ T F N+ TS F + LL T T QP
Sbjct: 1683 RIRENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQ-FT--QPALTLM 1739
Query: 138 -------IKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIG------CLFWLLAR 184
+K G IP A A G HS+G LA
Sbjct: 1740 EKAAFEDLKSK--GLIPADATF--------------A---G-HSLGEYAALAS----LA- 1774
Query: 185 MVLQMRGTIRPGHKWDVM-----VDLFFYREPEETKQAEEEETAAIDYATAEYNTNLTSG 239
DVM V++ FYR +E +Y N
Sbjct: 1775 ---------------DVMSIESLVEVVFYRGMTMQVAVPRDELGRSNYGMIAIN------ 1813
Query: 240 DQWPSQIADGG 250
P ++A
Sbjct: 1814 ---PGRVAASF 1821
Score = 35.4 bits (81), Expect = 0.026
Identities = 16/86 (18%), Positives = 25/86 (29%), Gaps = 22/86 (25%)
Query: 222 TAAIDYATAEYNTNLTSGDQWPS--QIADGG-----WAGGEVQKPIPGVPYFPEAPAATV 274
TA A A D W S + G + P P ++
Sbjct: 279 TAV---AIA-------ETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSL 328
Query: 275 PLGGDGWDAVPAPPMAAVTAPPMAAV 300
+G VP+P M +++ V
Sbjct: 329 E-NNEG---VPSP-MLSISNLTQEQV 349
Score = 31.9 bits (72), Expect = 0.29
Identities = 32/231 (13%), Positives = 67/231 (29%), Gaps = 84/231 (36%)
Query: 2 ATGTATAPRQLSQKEADIQM-----MLA--------AEVHLGTKNCDFQMERYVFKRRND 48
A + P + + + ML+ + ++ N + V
Sbjct: 313 AYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQVE----- 367
Query: 49 GIYIINLG----------KTWEKLQMAARVIVAIENPGDIIVQSARPYGQRAVLKFAKYT 98
I ++N G ++ L + R A + D QS P+ +R +
Sbjct: 368 -ISLVN-GAKNLVVSGPPQSLYGLNLTLRKAKA-PSGLD---QSRIPFSERKL------- 414
Query: 99 HAHAIAGRHTPGTFTNQ---MQTSFNEPRL-----LILTDPRTDHQPIKEAALGNIPTIA 150
F+N+ + + F+ L LI D ++ + IP
Sbjct: 415 ------------KFSNRFLPVASPFHSHLLVPASDLINKDLVKNNVSFNAKDIQ-IPVYD 461
Query: 151 FCD-TDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTIRPGHKWD 200
D +D +R + I + ++++ P W+
Sbjct: 462 TFDGSD--LRVLSGSISER-------------IVDCIIRL-----PVK-WE 491
Score = 28.9 bits (64), Expect = 2.7
Identities = 17/113 (15%), Positives = 30/113 (26%), Gaps = 32/113 (28%)
Query: 225 IDYATAEYNTNLTSGDQWPSQIADG----GWAGGEVQKP--IPGVPYFPEAPAATVPLGG 278
I ++ + + + G W ++ P P Y P + PL G
Sbjct: 188 IKFSAETLSELIRTTLDAEKVFTQGLNILEW----LENPSNTPDKDYLLSIPIS-CPLIG 242
Query: 279 -------------DGWDAVPA---PPMAAVTAPPMAAVTAPDVSAAPPPTGWD 315
G+ P + T VTA ++ W+
Sbjct: 243 VIQLAHYVVTAKLLGFT--PGELRSYLKGATGHSQGLVTAVAIAETD---SWE 290
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 33.7 bits (76), Expect = 0.098
Identities = 24/147 (16%), Positives = 44/147 (29%), Gaps = 34/147 (23%)
Query: 99 HAHAIAGRHTPGTFTNQMQTSFNE--PRLL--ILTDPRTDHQPIKEAALGNIPTIAFCDT 154
H H H T + Q + + + + D + +++ +I + D
Sbjct: 1 HHH----HHHMDFETGEHQYQYKDILSVFEDAFVDN--FDCKDVQDM-PKSILSKEEID- 52
Query: 155 DSPMRYVDI-GIPANNKGKHSIGCLFWLL----ARMVLQ-MRGTIRPGHKWDVMVDLFFY 208
I G LFW L MV + + +R +K+ ++
Sbjct: 53 -------HIIMSKDAVSGTLR---LFWTLLSKQEEMVQKFVEEVLRINYKF--LMSPI-- 98
Query: 209 REPEETKQAEEEETAAIDYATAEYNTN 235
E +Q I+ YN N
Sbjct: 99 --KTEQRQPSMMTRMYIEQRDRLYNDN 123
Score = 31.7 bits (71), Expect = 0.31
Identities = 15/109 (13%), Positives = 37/109 (33%), Gaps = 23/109 (21%)
Query: 23 LAAEVHLGTKNC-DFQMERYVFKRRNDGIYIINLGKTWEKLQMAARVIVAIENPGDIIVQ 81
+A +V C ++++ + + I+ +NL + +E ++ Q
Sbjct: 166 VALDV------CLSYKVQC----KMDFKIFWLNLKNCNSPETV-------LEMLQKLLYQ 208
Query: 82 SARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTD 130
+ R+ H+I +++ E LL+L +
Sbjct: 209 IDPNWTSRSDHSSNIKLRIHSIQAE-----LRRLLKSKPYENCLLVLLN 252
Score = 29.8 bits (66), Expect = 1.6
Identities = 32/201 (15%), Positives = 61/201 (30%), Gaps = 63/201 (31%)
Query: 35 DFQMERY----VFKRRNDGIYI--INLGKTWEKLQMAARVIVAIENPGDIIVQSARPYGQ 88
+++ + + VF +I I L W + + ++ + +
Sbjct: 370 EYR-KMFDRLSVF---PPSAHIPTILLSLIWFDVIK--------SDVMVVVNKLHK---Y 414
Query: 89 RAVLKFAK-YTHA-HAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTDHQPIKEAALGNI 146
V K K T + +I +++ NE L H+ I + NI
Sbjct: 415 SLVEKQPKESTISIPSIY-------LELKVKLE-NEYAL---------HRSIVDHY--NI 455
Query: 147 PTIAFCDTDSPMRYVD------IG---IPANNKGKHSIGCLF--------WLLARMVLQM 189
P F D Y+D IG + + + LF +L ++
Sbjct: 456 PK-TFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMT---LFRMVFLDFRFLEQKIRHDS 511
Query: 190 RGTIRPGHKWDVMVDLFFYRE 210
G + + L FY+
Sbjct: 512 TAWNASGSILNTLQQLKFYKP 532
>2uv8_A Fatty acid synthase subunit alpha (FAS2); fatty acid biosynthesis,
malonyl/palmitoyl transferase, phosphopantetheine,
transferase; HET: GVL FMN; 3.10A {Saccharomyces
cerevisiae} PDB: 2vkz_A* 3hmj_A*
Length = 1887
Score = 31.5 bits (71), Expect = 0.39
Identities = 15/49 (30%), Positives = 19/49 (38%)
Query: 265 YFPEAPAATVPLGGDGWDAVPAPPMAAVTAPPMAAVTAPDVSAAPPPTG 313
Y+ P+ + PAP AA P AA AP +AAP
Sbjct: 89 YYTPDPSELAAKEEPAKEEAPAPTPAASAPAPAAAAPAPVAAAAPAAAA 137
Score = 27.2 bits (60), Expect = 9.1
Identities = 10/45 (22%), Positives = 12/45 (26%)
Query: 267 PEAPAATVPLGGDGWDAVPAPPMAAVTAPPMAAVTAPDVSAAPPP 311
A + P A AP A AP +AA
Sbjct: 97 LAAKEEPAKEEAPAPTPAASAPAPAAAAPAPVAAAAPAAAAAEIA 141
>4e6f_A Uncharacterized protein; PF14730 family protein, DUF4468 with
TBP-like fold,structura genomics, joint center for
structural genomics, JCSG; HET: MSE; 1.49A {Bacteroides
ovatus}
Length = 181
Score = 28.8 bits (64), Expect = 1.6
Identities = 12/63 (19%), Positives = 25/63 (39%), Gaps = 12/63 (19%)
Query: 169 NKGKHSIGCLF--WLL----------ARMVLQMRGTIRPGHKWDVMVDLFFYREPEETKQ 216
++ K +I + W++ + Q+ T +PG+ + + F E +
Sbjct: 67 DEAKGTIAGVGEEWIVFSSSALSLDRTLVNYQITVTCKPGNCLVELEKIRFTYRETEKYK 126
Query: 217 AEE 219
AEE
Sbjct: 127 AEE 129
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins,
electron transfer complex, TTQ, electron transport,
oxidoreductase, periplasm, transport, metal- binding;
HET: TRQ; 2.50A {Paracoccus versutus}
Length = 426
Score = 28.5 bits (62), Expect = 3.6
Identities = 14/50 (28%), Positives = 15/50 (30%)
Query: 264 PYFPEAPAATVPLGGDGWDAVPAPPMAAVTAPPMAAVTAPDVSAAPPPTG 313
P PEAPA T G A A P + AP P
Sbjct: 35 PAEPEAPAETAAADAAGQTEGQRGAAEAAAALAAGEADEPVILEAPAPDA 84
>3lgi_A Protease DEGS; stress-sensor, HTRA, PDZ OMP, hydrolase, serine PR;
1.65A {Escherichia coli} PDB: 2qf3_A 2qf0_A 2rce_A*
3lh3_A* 3b8j_A 2qgr_A 3lh1_A 3lgy_A 3lgu_A 3lgv_A 3lgw_A
3lgt_A 2r3u_A
Length = 237
Score = 27.2 bits (61), Expect = 5.7
Identities = 11/32 (34%), Positives = 15/32 (46%)
Query: 126 LILTDPRTDHQPIKEAALGNIPTIAFCDTDSP 157
L+ +D TD +K A G +PTI P
Sbjct: 93 LVGSDSLTDLAVLKINATGGLPTIPINARRVP 124
>3sti_A Protease DEGQ; serine protease, PDZ domain, chaperone, hydrolase;
2.60A {Escherichia coli}
Length = 245
Score = 27.2 bits (61), Expect = 6.4
Identities = 8/31 (25%), Positives = 15/31 (48%)
Query: 126 LILTDPRTDHQPIKEAALGNIPTIAFCDTDS 156
LI +D ++D ++ + IA D+D
Sbjct: 104 LIGSDDQSDIALLQIQNPSKLTQIAIADSDK 134
>3lyd_A Uncharacterized protein; PSI-2, MCSG, GEBA, genomic encyclopae
bacteria and archaea, structural genomics, protein
structur initiative; HET: MSE; 1.45A {Jonesia
denitrificans}
Length = 161
Score = 26.8 bits (58), Expect = 7.1
Identities = 8/33 (24%), Positives = 10/33 (30%), Gaps = 1/33 (3%)
Query: 264 PYFPEAPAATVPLGGDGWDAVPAPPMAAVTAPP 296
FP TVP+ + W P P
Sbjct: 12 TEFPALTGFTVPIP-ETWQPDPTMGTQFAARPH 43
>1eys_C Photosynthetic reaction center; membrane protein complex, electron
transport; HET: BGL BCL BPH MQ8 HEM CRT LDA PEF; 2.20A
{Thermochromatium tepidum} SCOP: a.138.1.2
Length = 382
Score = 27.2 bits (59), Expect = 7.5
Identities = 17/56 (30%), Positives = 19/56 (33%), Gaps = 4/56 (7%)
Query: 257 QKPIPGVPYFPEAPAATVPLGGDGWDAVPAPPMAAVTAPPMAAVTAPDVSAAPPPT 312
P PEAPA VP +AVPA + AP AP P
Sbjct: 327 AAPAAATEAAPEAPAQEVPAA----EAVPAAAEPGAAEAAGSVEPAPVEEVAPAPA 378
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.318 0.134 0.418
Gapped
Lambda K H
0.267 0.0563 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 5,101,103
Number of extensions: 317914
Number of successful extensions: 671
Number of sequences better than 10.0: 1
Number of HSP's gapped: 646
Number of HSP's successfully gapped: 48
Length of query: 315
Length of database: 6,701,793
Length adjustment: 93
Effective length of query: 222
Effective length of database: 4,105,140
Effective search space: 911341080
Effective search space used: 911341080
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 57 (26.1 bits)