RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= 021262
         (315 letters)



>d1vi6a_ c.23.15.1 (A:) Ribosomal protein S2 {Archaeon Archaeoglobus
           fulgidus [TaxId: 2234]}
          Length = 193

 Score =  190 bits (484), Expect = 6e-61
 Identities = 65/187 (34%), Positives = 109/187 (58%), Gaps = 1/187 (0%)

Query: 19  IQMMLAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEKLQMAARVIVAIENPGDI 78
               LAA VH+GT+     M++++FK R DG+Y++++ K  E++++AA+  ++   P  I
Sbjct: 8   PDDYLAAGVHIGTQIKTGDMKKFIFKVRQDGLYVLDIRKLDERIRVAAK-FLSRYEPSKI 66

Query: 79  IVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTDHQPI 138
           ++ +AR Y  + V  F+K   +  I GR  PGT TN M + + EP ++ + DP  D Q +
Sbjct: 67  LLVAARQYAHKPVQMFSKVVGSDYIVGRFIPGTLTNPMLSEYREPEVVFVNDPAIDKQAV 126

Query: 139 KEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTIRPGHK 198
            EA    IP +A CD+++    VD+ IP NNKG+ ++  ++WLLAR + ++RG       
Sbjct: 127 SEATAVGIPVVALCDSNNSSADVDLVIPTNNKGRRALAIVYWLLAREIAKIRGQDFTYSI 186

Query: 199 WDVMVDL 205
            D   +L
Sbjct: 187 EDFEAEL 193


>d2uubb1 c.23.15.1 (B:7-240) Ribosomal protein S2 {Thermus
           thermophilus [TaxId: 274]}
          Length = 234

 Score =  152 bits (384), Expect = 2e-45
 Identities = 55/234 (23%), Positives = 84/234 (35%), Gaps = 51/234 (21%)

Query: 19  IQMMLAAEVHLG--TKNCDFQMERYVFKRRNDGIYIINLGKTWEKLQMAARVI-VAIENP 75
           ++ +L A VH G   K  + +  RY++  RN GI+II+L KT E+L+   R I       
Sbjct: 1   VKELLEAGVHFGHERKRWNPKFARYIYAERN-GIHIIDLQKTMEELERTFRFIEDLAMRG 59

Query: 76  GDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFN-------------- 121
           G I+    +   Q  V   A+      +  R   G  TN    S                
Sbjct: 60  GTILFVGTKKQAQDIVRMEAERAGMPYVNQRWLGGMLTNFKTISQRVHRLEELEALFASP 119

Query: 122 --------------------------------EPRLLILTDPRTDHQPIKEAALGNIPTI 149
                                            P  + + DP  +   ++EA    IP I
Sbjct: 120 EIEERPKKEQVRLKHELERLQKYLSGFRLLKRLPDAIFVVDPTKEAIAVREARKLFIPVI 179

Query: 150 AFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTI-RPGHKWDVM 202
           A  DTDS    VD  IP N+    SI  +      +++Q RG +  P   + ++
Sbjct: 180 ALADTDSDPDLVDYIIPGNDDAIRSIQLILSRAVDLIIQARGGVVEPSPSYALV 233


>d2gy9b1 c.23.15.1 (B:8-225) Ribosomal protein S2 {Escherichia coli
           [TaxId: 562]}
          Length = 218

 Score =  137 bits (346), Expect = 6e-40
 Identities = 49/218 (22%), Positives = 71/218 (32%), Gaps = 50/218 (22%)

Query: 22  MLAAEVHLG--TKNCDFQMERYVFKRRNDGIYIINLGKTWEKLQMAARVIVA-IENPGDI 78
           ML A VH G  T+  + +M+ ++F  RN  ++IINL KT      A   +       G I
Sbjct: 1   MLKAGVHFGHQTRYWNPKMKPFIFGARN-KVHIINLEKTVPMFNEALAELNKIASRKGKI 59

Query: 79  IVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQ----------------------- 115
           +    +     AV   A       +  R   G  TN                        
Sbjct: 60  LFVGTKRAASEAVKDAALSCDQFFVNHRWLGGMLTNWKTVRQSIKRLKDLETQSQDGTFD 119

Query: 116 -----------------------MQTSFNEPRLLILTDPRTDHQPIKEAALGNIPTIAFC 152
                                  ++     P  L + D   +H  IKEA    IP  A  
Sbjct: 120 KLTKKEALMRTRELEKLENSLGGIKDMGGLPDALFVIDADHEHIAIKEANNLGIPVFAIV 179

Query: 153 DTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMR 190
           DT+S    VD  IP N+    ++      +A  V + R
Sbjct: 180 DTNSDPDGVDFVIPGNDDAIRAVTLYLGAVAATVREGR 217


>d2gqba1 a.282.1.1 (A:1-130) Hypothetical protein RPA2825
           {Rhodopseudomonas palustris [TaxId: 1076]}
          Length = 130

 Score = 25.9 bits (57), Expect = 4.0
 Identities = 11/36 (30%), Positives = 12/36 (33%)

Query: 280 GWDAVPAPPMAAVTAPPMAAVTAPDVSAAPPPTGWD 315
           G  A  +P  A   A   AA TAP           D
Sbjct: 13  GDSAAASPGGAQAPATTGAAGTAPTAPQPTAAPSID 48



 Score = 25.5 bits (56), Expect = 5.5
 Identities = 11/42 (26%), Positives = 16/42 (38%), Gaps = 2/42 (4%)

Query: 266 FPEAPAATVPLGGDGWDAVPAPPMAAVTAPPMAAVTAPDVSA 307
           F ++ AA+         A       A TAP   A  + DV+ 
Sbjct: 12  FGDSAAASPGGAQAP--ATTGAAGTAPTAPQPTAAPSIDVAP 51



 Score = 25.1 bits (55), Expect = 7.9
 Identities = 10/34 (29%), Positives = 12/34 (35%)

Query: 277 GGDGWDAVPAPPMAAVTAPPMAAVTAPDVSAAPP 310
           G     +       A T     A TAP  +AAP 
Sbjct: 13  GDSAAASPGGAQAPATTGAAGTAPTAPQPTAAPS 46


>d1j7xa_ c.14.1.2 (A:) Interphotoreceptor retinoid-binding protein
           IRBP {African clawed frog (Xenopus laevis) [TaxId:
           8355]}
          Length = 302

 Score = 26.5 bits (58), Expect = 4.5
 Identities = 9/35 (25%), Positives = 16/35 (45%)

Query: 113 TNQMQTSFNEPRLLILTDPRTDHQPIKEAALGNIP 147
             ++Q+   +PRL++ +   T   P       NIP
Sbjct: 51  NYELQSLTEDPRLVLKSKTDTLVMPGDSIQAENIP 85


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.318    0.134    0.418 

Gapped
Lambda     K      H
   0.267   0.0527    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,213,397
Number of extensions: 57182
Number of successful extensions: 135
Number of sequences better than 10.0: 1
Number of HSP's gapped: 123
Number of HSP's successfully gapped: 14
Length of query: 315
Length of database: 2,407,596
Length adjustment: 85
Effective length of query: 230
Effective length of database: 1,240,546
Effective search space: 285325580
Effective search space used: 285325580
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (24.7 bits)