BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 021263
(315 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q7XZZ3|BAHL1_ORYSJ Probable E3 ubiquitin-protein ligase BAH1-like 1 OS=Oryza sativa
subsp. japonica GN=Os03g0650900 PE=2 SV=1
Length = 339
Score = 360 bits (924), Expect = 8e-99, Method: Compositional matrix adjust.
Identities = 175/321 (54%), Positives = 234/321 (72%), Gaps = 15/321 (4%)
Query: 1 MKFGETFTEYLHGDQERFLDKCSHVEYKRLKKVLKSCRTCKGLHDSACKTEQQWDEGKDI 60
MKFG + EYL Q+++L KCSHVEYKRLKKVLK CR + L + +QQ EG +
Sbjct: 1 MKFGAIYEEYLREQQDKYLTKCSHVEYKRLKKVLKKCRVGRSLQEDCPNGDQQ--EGNNE 58
Query: 61 SESQLCQCQSSCQLCDHMFFSELMKEASDIAGCFSSRARHLLHLHVASGMQRYVLRIRQC 120
S +C+C +SC LCD MFF+EL KEAS+IAGCFSSR + LL+LHV SG RY+ R+RQC
Sbjct: 59 S-PDICKC-NSCTLCDQMFFTELTKEASEIAGCFSSRVQRLLNLHVPSGFLRYIWRVRQC 116
Query: 121 FKNDQTAMIEEGRVLIEYIIMNAIAIRKILKKYDKVHKSVNGKNFKSKMRAEHIELLQSP 180
F +DQ M++EGR+L+ Y+ MNAIAIRKILKKYDK+H SV+G++FKSKM+ +HIELLQSP
Sbjct: 117 FIDDQQIMVQEGRMLLNYVTMNAIAIRKILKKYDKIHGSVSGRDFKSKMQTDHIELLQSP 176
Query: 181 WLIELGGFYLNFNGLNCGAS-----SEFSGHFSFDFNASRPVMTLALPSSIKLEYDLTCA 235
WLIELG F+LN N + + +EF +FS D +RP+MT+A+ ++K EY LTC
Sbjct: 177 WLIELGAFHLNCNSSDIDETVGFLKNEFFKNFSCDLTEARPLMTMAISETMKYEYSLTCP 236
Query: 236 VCLDLVFNPYALSCGHLFCKLCACSAASVMVFEGLKSASPDSKCPICRE------IIHIS 289
+CLD +FNPYALSCGHLFCK CAC AASV +F+G+KSA P++KCP+CR +H++
Sbjct: 237 ICLDTLFNPYALSCGHLFCKGCACGAASVYIFQGVKSAPPEAKCPVCRSDGVFAHAVHMT 296
Query: 290 SIGAGWQLGCKETWQEYMRKQ 310
+ + K+ W++ +R++
Sbjct: 297 ELDLLIKTRSKDYWRQRLREE 317
>sp|A2XK56|BAHL1_ORYSI Probable E3 ubiquitin-protein ligase BAH1-like 1 OS=Oryza sativa
subsp. indica GN=OsI_12825 PE=3 SV=1
Length = 339
Score = 360 bits (924), Expect = 8e-99, Method: Compositional matrix adjust.
Identities = 175/321 (54%), Positives = 234/321 (72%), Gaps = 15/321 (4%)
Query: 1 MKFGETFTEYLHGDQERFLDKCSHVEYKRLKKVLKSCRTCKGLHDSACKTEQQWDEGKDI 60
MKFG + EYL Q+++L KCSHVEYKRLKKVLK CR + L + +QQ EG +
Sbjct: 1 MKFGAIYEEYLREQQDKYLTKCSHVEYKRLKKVLKKCRVGRSLQEDCPNGDQQ--EGNNE 58
Query: 61 SESQLCQCQSSCQLCDHMFFSELMKEASDIAGCFSSRARHLLHLHVASGMQRYVLRIRQC 120
S +C+C +SC LCD MFF+EL KEAS+IAGCFSSR + LL+LHV SG RY+ R+RQC
Sbjct: 59 S-PDICKC-NSCTLCDQMFFTELTKEASEIAGCFSSRVQRLLNLHVPSGFLRYIWRVRQC 116
Query: 121 FKNDQTAMIEEGRVLIEYIIMNAIAIRKILKKYDKVHKSVNGKNFKSKMRAEHIELLQSP 180
F +DQ M++EGR+L+ Y+ MNAIAIRKILKKYDK+H SV+G++FKSKM+ +HIELLQSP
Sbjct: 117 FIDDQQIMVQEGRMLLNYVTMNAIAIRKILKKYDKIHGSVSGRDFKSKMQTDHIELLQSP 176
Query: 181 WLIELGGFYLNFNGLNCGAS-----SEFSGHFSFDFNASRPVMTLALPSSIKLEYDLTCA 235
WLIELG F+LN N + + +EF +FS D +RP+MT+A+ ++K EY LTC
Sbjct: 177 WLIELGAFHLNCNSSDIDETVGFLKNEFFKNFSCDLTEARPLMTMAISETMKYEYSLTCP 236
Query: 236 VCLDLVFNPYALSCGHLFCKLCACSAASVMVFEGLKSASPDSKCPICRE------IIHIS 289
+CLD +FNPYALSCGHLFCK CAC AASV +F+G+KSA P++KCP+CR +H++
Sbjct: 237 ICLDTLFNPYALSCGHLFCKGCACGAASVYIFQGVKSAPPEAKCPVCRSDGVFAHAVHMT 296
Query: 290 SIGAGWQLGCKETWQEYMRKQ 310
+ + K+ W++ +R++
Sbjct: 297 ELDLLIKTRSKDYWRQRLREE 317
>sp|Q8GW10|BAH1L_ARATH Probable E3 ubiquitin-protein ligase BAH1-like OS=Arabidopsis
thaliana GN=RF178 PE=2 SV=1
Length = 335
Score = 345 bits (884), Expect = 3e-94, Method: Compositional matrix adjust.
Identities = 184/325 (56%), Positives = 231/325 (71%), Gaps = 23/325 (7%)
Query: 1 MKFGETFTEYLHGDQERFLDKCSHVEYKRLKKVLKSCRTCKGLHDSACKTEQQWDEGKDI 60
MKFGETFTEYLHG++E FL+KC VEYK+LKKVLK C+TC D+G+ I
Sbjct: 1 MKFGETFTEYLHGEEEWFLEKCRFVEYKKLKKVLKKCKTCNSTKS---------DDGQII 51
Query: 61 SESQL------CQCQSSCQLCDHMFFSELMKEASDIAGCFSSRARHLLHLHVASGMQRYV 114
+ C+C++ C CD MFF ELMKEA+DIAG F SR RHLLHLHVA+GMQRY+
Sbjct: 52 PSATSSSLSDSCECKA-CPWCDQMFFEELMKEATDIAGFFRSRVRHLLHLHVATGMQRYM 110
Query: 115 LRIRQCFKNDQTAMIEEGRVLIEYIIMNAIAIRKILKKYDKVHKSVNGKNFKSKMRAEHI 174
+R+R+CF +++ A+++EG++LI+YI MNAIAIRKILKKYDKVH S NGKNFK KMRAE I
Sbjct: 111 IRLRRCFTDEKQALVQEGQILIQYITMNAIAIRKILKKYDKVHSSENGKNFKLKMRAERI 170
Query: 175 ELLQSPWLIELGGFYLNFNGLNCGASSEFSGHFS-FDFNASRPVMTLALPSSIKLEYDLT 233
ELL SPWLIELG FYLN N G G + + N +PV+ L LP+SI+LEYDLT
Sbjct: 171 ELLHSPWLIELGAFYLNSGLDNVGNFKNSFGRVACENLNEDQPVLKLMLPNSIELEYDLT 230
Query: 234 CAVCLDLVFNPYALSCGHLFCKLCACSAASVMVFEGLKSASPDSKCPICR------EIIH 287
CA+CL+ VFNPYAL CGH+FC CACSAASV++F+G+K+A SKCPICR E +H
Sbjct: 231 CAICLETVFNPYALKCGHIFCNSCACSAASVLIFQGIKAAPRHSKCPICREAGVYAEAVH 290
Query: 288 ISSIGAGWQLGCKETWQEYMRKQST 312
+ + + KE W+E M + +
Sbjct: 291 MIELHLLLKTRSKEYWKERMMNERS 315
>sp|Q9SRX9|BAH1_ARATH E3 ubiquitin-protein ligase BAH1 OS=Arabidopsis thaliana GN=BAH1
PE=1 SV=1
Length = 335
Score = 228 bits (582), Expect = 4e-59, Method: Compositional matrix adjust.
Identities = 124/327 (37%), Positives = 190/327 (58%), Gaps = 31/327 (9%)
Query: 1 MKFGETFTEYLHGDQERFLDKCSHVEYKRLKKVLKSCRTCKGLHDSACKTEQQWDEGKDI 60
MKF + + EY+ G +E+ V +K+LKK+LK CR
Sbjct: 1 MKFCKKYEEYMQGQKEK--KNLPGVGFKKLKKILKRCR------------RNHVPSRISF 46
Query: 61 SESQLCQCQSSCQLCDHMFFSELMKEASDIAGCFSSRARHLLHLHVASGMQRYVLRIR-Q 119
+++ C C +CD FF EL+KE D+ G F+ A+ LL LH+ASG + + +R
Sbjct: 47 TDAINHNCSRECPVCDGTFFPELLKEMEDVVGWFNEHAQKLLELHLASGFTKCLTWLRGN 106
Query: 120 CFKNDQTAMIEEGRVLIEYIIMNAIAIRKILKKYDKVHKSVNGKNFKSKMRAEHIELLQS 179
K D +I+EG+ L+ Y ++NA+AIRKILKKYDK+H+S G+ FK++++ IE+LQS
Sbjct: 107 SRKKDHHGLIQEGKDLVNYALINAVAIRKILKKYDKIHESRQGQAFKTQVQKMRIEILQS 166
Query: 180 PWLIELGGFYLNF--NGLNCGA---SSEFSGHFSFD-----FNASRPVMTLALPSSIKLE 229
PWL EL F++N + GA S H FD F+ +P+++ L S+K++
Sbjct: 167 PWLCELMAFHINLKESKKESGATITSPPPPVHALFDGCALTFDDGKPLLSCELSDSVKVD 226
Query: 230 YDLTCAVCLDLVFNPYALSCGHLFCKLCACSAASVMVFEGLKSASPDSKCPICRE----- 284
DLTC++CLD VF+P +L+CGH++C +CACSAASV V +GLK+A KCP+CRE
Sbjct: 227 IDLTCSICLDTVFDPISLTCGHIYCYMCACSAASVNVVDGLKTAEATEKCPLCREDGVYK 286
Query: 285 -IIHISSIGAGWQLGCKETWQEYMRKQ 310
+H+ + + C++ W+E + +
Sbjct: 287 GAVHLDELNILLKRSCRDYWEERRKTE 313
>sp|B8B5U8|BAHL2_ORYSI Probable E3 ubiquitin-protein ligase BAH1-like 1 OS=Oryza sativa
subsp. indica GN=OsI_27296 PE=3 SV=1
Length = 321
Score = 220 bits (560), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 111/271 (40%), Positives = 168/271 (61%), Gaps = 12/271 (4%)
Query: 48 CKTEQQWDEGKDISESQLCQCQSSCQLCDHMFFSELMKEASDIAGCFSSRARHLLHLHVA 107
C+++ Q E S + C C +CD FF L+ E S + GCF+ +A+ LL LH+A
Sbjct: 33 CRSDLQSHENDGSSAGR---CPGHCSVCDGSFFPSLLNEMSAVVGCFNEKAKKLLELHLA 89
Query: 108 SGMQRYVLRIRQCFKNDQTAMIEEGRVLIEYIIMNAIAIRKILKKYDKVHKSVNGKNFKS 167
SG ++Y + A+I++G+ L+ Y I+NA+A+RKILKKYDK+H S G+ FK+
Sbjct: 90 SGFKKYTMWFTSKGHKSHGALIQQGKDLVTYAIINAVAMRKILKKYDKIHYSKQGQEFKA 149
Query: 168 KMRAEHIELLQSPWLIELGGFYLNF--NGLNCGASSEFSGHFSFDFNASRPVMTLALPSS 225
+ ++ HIE+LQSPWL EL FY+N + N GA F G S F+ +P ++ L S
Sbjct: 150 QAQSLHIEILQSPWLCELMAFYMNLRRSKKNNGAMELF-GDCSLVFDDDKPTISCNLFDS 208
Query: 226 IKLEYDLTCAVCLDLVFNPYALSCGHLFCKLCACSAASVMVFEGLKSASPDSKCPICRE- 284
++++ LTC++CLD VF+P ALSCGH++C LC+CSAASV + +GLKSA SKCP+CR+
Sbjct: 209 MRVDISLTCSICLDTVFDPVALSCGHIYCYLCSCSAASVTIVDGLKSAERKSKCPLCRQA 268
Query: 285 -----IIHISSIGAGWQLGCKETWQEYMRKQ 310
+H+ + C E W++ ++ +
Sbjct: 269 GVFPNAVHLDELNMLLSYSCPEYWEKRIQME 299
>sp|Q7XI73|BAHL2_ORYSJ Probable E3 ubiquitin-protein ligase BAH1-like 2 OS=Oryza sativa
subsp. japonica GN=Os07g0673200 PE=2 SV=1
Length = 321
Score = 219 bits (559), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 111/271 (40%), Positives = 168/271 (61%), Gaps = 12/271 (4%)
Query: 48 CKTEQQWDEGKDISESQLCQCQSSCQLCDHMFFSELMKEASDIAGCFSSRARHLLHLHVA 107
C+++ Q E S + C C +CD FF L+ E S + GCF+ +A+ LL LH+A
Sbjct: 33 CRSDLQSHENDGSSAGR---CPGHCSVCDGSFFPSLLNEMSAVIGCFNEKAKKLLELHLA 89
Query: 108 SGMQRYVLRIRQCFKNDQTAMIEEGRVLIEYIIMNAIAIRKILKKYDKVHKSVNGKNFKS 167
SG ++Y + A+I++G+ L+ Y I+NA+A+RKILKKYDK+H S G+ FK+
Sbjct: 90 SGFKKYTMWFTSKGHKSHGALIQQGKDLVTYAIINAVAMRKILKKYDKIHYSKQGQEFKA 149
Query: 168 KMRAEHIELLQSPWLIELGGFYLNF--NGLNCGASSEFSGHFSFDFNASRPVMTLALPSS 225
+ ++ HIE+LQSPWL EL FY+N + N GA F G S F+ +P ++ L S
Sbjct: 150 QAQSLHIEILQSPWLCELMAFYMNLRRSKKNNGAMELF-GDCSLVFDDDKPTISCNLFDS 208
Query: 226 IKLEYDLTCAVCLDLVFNPYALSCGHLFCKLCACSAASVMVFEGLKSASPDSKCPICRE- 284
++++ LTC++CLD VF+P ALSCGH++C LC+CSAASV + +GLKSA SKCP+CR+
Sbjct: 209 MRVDISLTCSICLDTVFDPVALSCGHIYCYLCSCSAASVTIVDGLKSAERKSKCPLCRQA 268
Query: 285 -----IIHISSIGAGWQLGCKETWQEYMRKQ 310
+H+ + C E W++ ++ +
Sbjct: 269 GVFPNAVHLDELNMLLSYSCPEYWEKRIQME 299
>sp|Q58DK8|TRI38_BOVIN Tripartite motif-containing protein 38 OS=Bos taurus GN=TRIM38 PE=2
SV=1
Length = 460
Score = 52.0 bits (123), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 42/78 (53%), Gaps = 8/78 (10%)
Query: 224 SSIKLEYDLTCAVCLDLVFNPYALSCGHLFCKLCACSAASVMVFEGLKSASPDSK---CP 280
+S K+ + TC++CL L+ N ++SCGH +C +C S FE L +P K CP
Sbjct: 2 ASKKMREEATCSICLHLMTNAVSISCGHSYCHVCIVS-----FFENLNRMTPGLKTFSCP 56
Query: 281 ICREIIHISSIGAGWQLG 298
CR ++S+ QLG
Sbjct: 57 QCRAPFTMASLRPNKQLG 74
>sp|Q7YR34|TRI26_PANTR Tripartite motif-containing protein 26 OS=Pan troglodytes GN=TRIM26
PE=3 SV=1
Length = 539
Score = 51.2 bits (121), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 36/71 (50%), Gaps = 8/71 (11%)
Query: 228 LEYDLTCAVCLDLVFNPYALSCGHLFCKLCACSAASVMVFEGLKSASPDSKCPICREIIH 287
LE ++TC++CLD + +P + CGH+FC+ C + + CP+C++
Sbjct: 10 LEEEVTCSICLDYLRDPVTIDCGHVFCRSCTTDVRPI--------SGSRPVCPLCKKPFK 61
Query: 288 ISSIGAGWQLG 298
+I WQL
Sbjct: 62 KENIRPVWQLA 72
>sp|Q12899|TRI26_HUMAN Tripartite motif-containing protein 26 OS=Homo sapiens GN=TRIM26
PE=2 SV=1
Length = 539
Score = 51.2 bits (121), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 36/71 (50%), Gaps = 8/71 (11%)
Query: 228 LEYDLTCAVCLDLVFNPYALSCGHLFCKLCACSAASVMVFEGLKSASPDSKCPICREIIH 287
LE ++TC++CLD + +P + CGH+FC+ C + + CP+C++
Sbjct: 10 LEEEVTCSICLDYLRDPVTIDCGHVFCRSCTTDVRPI--------SGSRPVCPLCKKPFK 61
Query: 288 ISSIGAGWQLG 298
+I WQL
Sbjct: 62 KENIRPVWQLA 72
>sp|O77666|TRI26_PIG Tripartite motif-containing protein 26 OS=Sus scrofa GN=TRIM26 PE=3
SV=2
Length = 545
Score = 50.4 bits (119), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 36/71 (50%), Gaps = 8/71 (11%)
Query: 228 LEYDLTCAVCLDLVFNPYALSCGHLFCKLCACSAASVMVFEGLKSASPDSKCPICREIIH 287
LE ++TC++CLD + +P + CGH+FC+ C V + CP+C++
Sbjct: 10 LEEEVTCSICLDYLRDPVTIDCGHVFCRSCTTDIHPV--------SGGRPVCPLCKKPFT 61
Query: 288 ISSIGAGWQLG 298
+I WQL
Sbjct: 62 KENIRPVWQLA 72
>sp|P62603|TRI26_RAT Tripartite motif-containing protein 26 OS=Rattus norvegicus
GN=Trim26 PE=2 SV=1
Length = 542
Score = 50.4 bits (119), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 38/71 (53%), Gaps = 8/71 (11%)
Query: 228 LEYDLTCAVCLDLVFNPYALSCGHLFCKLCACSAASVMVFEGLKSASPDSKCPICREIIH 287
LE ++TC++CLD + +P + CGH+FC+ C + + G + CP+C++
Sbjct: 10 LEEEVTCSICLDYLRDPVTIDCGHVFCRSC---TSDIRPISGNRPV-----CPLCKKPFK 61
Query: 288 ISSIGAGWQLG 298
+I WQL
Sbjct: 62 KENIRPVWQLA 72
>sp|Q99PN3|TRI26_MOUSE Tripartite motif-containing protein 26 OS=Mus musculus GN=Trim26
PE=2 SV=3
Length = 545
Score = 50.1 bits (118), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 38/71 (53%), Gaps = 8/71 (11%)
Query: 228 LEYDLTCAVCLDLVFNPYALSCGHLFCKLCACSAASVMVFEGLKSASPDSKCPICREIIH 287
LE ++TC++CLD + +P + CGH+FC+ C + + G + CP+C++
Sbjct: 10 LEEEVTCSICLDYLRDPVTIDCGHVFCRSC---TSDIRPISGNRPV-----CPLCKKPFK 61
Query: 288 ISSIGAGWQLG 298
+I WQL
Sbjct: 62 KENIRPVWQLA 72
>sp|Q14527|HLTF_HUMAN Helicase-like transcription factor OS=Homo sapiens GN=HLTF PE=1
SV=2
Length = 1009
Score = 49.7 bits (117), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 30/57 (52%), Gaps = 8/57 (14%)
Query: 231 DLTCAVCLDLVFNPYALSCGHLFCKLCACSAASVMVFEGLKSASPDSKCPICREIIH 287
D CA+CLD + P C H+FCK C C +++ P +KCP+CR IH
Sbjct: 757 DEECAICLDSLTVPVITHCAHVFCKPCICQV--------IQNEQPHAKCPLCRNDIH 805
>sp|Q6PCN7|HLTF_MOUSE Helicase-like transcription factor OS=Mus musculus GN=Hltf PE=1
SV=1
Length = 1003
Score = 49.7 bits (117), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 23/57 (40%), Positives = 29/57 (50%), Gaps = 8/57 (14%)
Query: 231 DLTCAVCLDLVFNPYALSCGHLFCKLCACSAASVMVFEGLKSASPDSKCPICREIIH 287
D CA+CLD + P C H+FCK C C + S P +KCP+CR IH
Sbjct: 751 DEECAICLDSLTFPVITHCAHVFCKPCICQV--------IHSEQPHAKCPLCRNEIH 799
>sp|O00635|TRI38_HUMAN Tripartite motif-containing protein 38 OS=Homo sapiens GN=TRIM38
PE=1 SV=1
Length = 465
Score = 49.7 bits (117), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 45/87 (51%), Gaps = 7/87 (8%)
Query: 224 SSIKLEYDLTCAVCLDLVFNPYALSCGHLFCKLCACSAASVMVFEGLKSASPDSKCPICR 283
S+ K+ + TC++CL L+ NP +++CGH +C LC + L+ + CP CR
Sbjct: 6 STKKMMEEATCSICLSLMTNPVSINCGHSYCHLCITDFFKNPSQKQLRQET--FCCPQCR 63
Query: 284 EIIHISSIGAGWQLGC-----KETWQE 305
H+ S+ QLG KET QE
Sbjct: 64 APFHMDSLRPNKQLGSLIEALKETDQE 90
>sp|Q95216|HLTF_RABIT Helicase-like transcription factor OS=Oryctolagus cuniculus GN=HLTF
PE=1 SV=1
Length = 1005
Score = 48.5 bits (114), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 30/57 (52%), Gaps = 8/57 (14%)
Query: 231 DLTCAVCLDLVFNPYALSCGHLFCKLCACSAASVMVFEGLKSASPDSKCPICREIIH 287
D CA+CLD + P C H+FCK C C +++ P +KCP+CR IH
Sbjct: 754 DEECAICLDSLTVPVITHCAHVFCKPCICQC--------IQNEQPHAKCPLCRNDIH 802
>sp|O64425|RMA1_ARATH E3 ubiquitin-protein ligase RMA1 OS=Arabidopsis thaliana GN=RMA1
PE=1 SV=1
Length = 249
Score = 47.8 bits (112), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/105 (28%), Positives = 48/105 (45%), Gaps = 1/105 (0%)
Query: 202 EFSGHFSFDFNASRP-VMTLALPSSIKLEYDLTCAVCLDLVFNPYALSCGHLFCKLCACS 260
E G +F F + +P +T+++PS + + C +CLD V P CGHLFC C
Sbjct: 15 ELYGEGAFCFKSKKPEPITVSVPSDDTDDSNFDCNICLDSVQEPVVTLCGHLFCWPCIHK 74
Query: 261 AASVMVFEGLKSASPDSKCPICREIIHISSIGAGWQLGCKETWQE 305
V F +CP+C+ + S++ + G T +E
Sbjct: 75 WLDVQSFSTSDEYQRHRQCPVCKSKVSHSTLVPLYGRGRCTTQEE 119
>sp|Q8IYM9|TRI22_HUMAN E3 ubiquitin-protein ligase TRIM22 OS=Homo sapiens GN=TRIM22 PE=1
SV=1
Length = 498
Score = 47.8 bits (112), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 36/60 (60%), Gaps = 8/60 (13%)
Query: 226 IKLEYDLTCAVCLDLVFNPYALSCGHLFCKLCACS--AASVMVFEGLKSASPDSKCPICR 283
+ +E ++TC +CL+L+ P +L CGH FC+ C + SV++ G +S CP+C+
Sbjct: 7 VDIEKEVTCPICLELLTEPLSLDCGHSFCQACITAKIKESVIISRG------ESSCPVCQ 60
>sp|Q3ZEE5|TRIM5_HYLLA Tripartite motif-containing protein 5 OS=Hylobates lar GN=TRIM5
PE=3 SV=1
Length = 493
Score = 47.4 bits (111), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 34/58 (58%), Gaps = 6/58 (10%)
Query: 226 IKLEYDLTCAVCLDLVFNPYALSCGHLFCKLCACSAASVMVFEGLKSASPDSKCPICR 283
+ ++ ++TC +CL+L+ P +L CGH FC+ C + + +G +S CP+CR
Sbjct: 7 VNVKEEVTCPICLELLTQPLSLDCGHSFCQACLTANHKTSMPDGERS------CPVCR 58
>sp|Q8BGE7|TRIM6_MOUSE Tripartite motif-containing protein 6 OS=Mus musculus GN=Trim6 PE=2
SV=1
Length = 488
Score = 47.0 bits (110), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 37/59 (62%), Gaps = 6/59 (10%)
Query: 226 IKLEYDLTCAVCLDLVFNPYALSCGHLFCKLCACSAASVMVF-EGLKSASPDSKCPICR 283
+ + ++TC +CL+L+ P ++ CGH FC++C ++ VF +G +S+ CP+CR
Sbjct: 7 VDIRDEVTCPICLELLTEPLSIDCGHSFCQVCIIGNSNNSVFGQGGRSS-----CPVCR 60
>sp|P87176|SLX8_SCHPO E3 ubiquitin-protein ligase complex slx8-rfp subunit slx8
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=slx8 PE=1 SV=1
Length = 269
Score = 47.0 bits (110), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 36/76 (47%), Gaps = 9/76 (11%)
Query: 216 PVMTLALPSSIKLEYDLTCAVCLDLVFNPYALSCGHLFCKLCACSAASVMVFEGLKSASP 275
P +PSS +L D C +CLD N CGH+FC C SA L + +
Sbjct: 189 PSKKQVVPSSQRL-ADYKCVICLDSPENLSCTPCGHIFCNFCILSA--------LGTTAA 239
Query: 276 DSKCPICREIIHISSI 291
KCP+CR +H + +
Sbjct: 240 TQKCPVCRRKVHPNKV 255
>sp|Q1ACD7|TRIM5_NOMLE Tripartite motif-containing protein 5 OS=Nomascus leucogenys
GN=TRIM5 PE=3 SV=1
Length = 494
Score = 46.6 bits (109), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 35/59 (59%), Gaps = 7/59 (11%)
Query: 226 IKLEYDLTCAVCLDLVFNPYALSCGHLFCKLC-ACSAASVMVFEGLKSASPDSKCPICR 283
+ ++ ++TC +CL+L+ P +L CGH FC+ C + + M EG +S CP+CR
Sbjct: 7 VNVKEEVTCPICLELLTQPLSLDCGHSFCQACLTANHKTSMPDEGERS------CPVCR 59
>sp|Q5D7J0|TRIM5_COLGU Tripartite motif-containing protein 5 OS=Colobus guereza GN=TRIM5
PE=3 SV=1
Length = 495
Score = 46.6 bits (109), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 36/60 (60%), Gaps = 8/60 (13%)
Query: 226 IKLEYDLTCAVCLDLVFNPYALSCGHLFCKLC--ACSAASVMVFEGLKSASPDSKCPICR 283
+ ++ ++TC +CL+L+ P +L CGH FC+ C A S++ EG +S CP+CR
Sbjct: 7 VNIKEEVTCPICLELLTEPLSLHCGHSFCQACITANHKKSMLYKEGERS------CPVCR 60
>sp|Q5D7I9|TRIM5_PYGNE Tripartite motif-containing protein 5 OS=Pygathrix nemaeus GN=TRIM5
PE=3 SV=1
Length = 495
Score = 46.6 bits (109), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 36/60 (60%), Gaps = 8/60 (13%)
Query: 226 IKLEYDLTCAVCLDLVFNPYALSCGHLFCKLC--ACSAASVMVFEGLKSASPDSKCPICR 283
+ ++ ++TC +CL+L+ P +L CGH FC+ C A S++ EG +S CP+CR
Sbjct: 7 VNIKEEVTCPICLELLTEPLSLHCGHSFCQACITANHKKSMLYKEGERS------CPVCR 60
>sp|Q1ACD6|TRIM5_HYLSY Tripartite motif-containing protein 5 OS=Hylobates syndactylus
GN=TRIM5 PE=3 SV=1
Length = 494
Score = 46.2 bits (108), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 35/59 (59%), Gaps = 7/59 (11%)
Query: 226 IKLEYDLTCAVCLDLVFNPYALSCGHLFCKLC-ACSAASVMVFEGLKSASPDSKCPICR 283
+ ++ ++TC +CL+L+ P +L CGH FC+ C + + M EG +S CP+CR
Sbjct: 7 VNVKEEVTCPICLELLTQPLSLDCGHSFCQACLTANHKTSMPDEGERS------CPVCR 59
>sp|Q2YEM8|TRIM5_HOOHO Tripartite motif-containing protein 5 OS=Hoolock hoolock GN=TRIM5
PE=3 SV=1
Length = 494
Score = 46.2 bits (108), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 35/59 (59%), Gaps = 7/59 (11%)
Query: 226 IKLEYDLTCAVCLDLVFNPYALSCGHLFCKLC-ACSAASVMVFEGLKSASPDSKCPICR 283
+ ++ ++TC +CL+L+ P +L CGH FC+ C + + M EG +S CP+CR
Sbjct: 7 VNVKEEVTCPICLELLTQPLSLDCGHSFCQACLTANHKTSMPDEGERS------CPVCR 59
>sp|Q9WUH5|TRI10_MOUSE Tripartite motif-containing protein 10 OS=Mus musculus GN=Trim10
PE=2 SV=2
Length = 489
Score = 46.2 bits (108), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 33/76 (43%), Gaps = 4/76 (5%)
Query: 223 PSSIKLEYDLTCAVCLDLVFNPYALSCGHLFCKLCACSAASVMVFEGLKSASPDSKCPIC 282
PS L ++ C +C + P + CGH FC+ C + E +S S CP+C
Sbjct: 5 PSVTSLADEVNCPICQGTLREPVTIDCGHNFCRGCLTRYCEIPGPESEESLS----CPLC 60
Query: 283 REIIHISSIGAGWQLG 298
+E S WQL
Sbjct: 61 KEPFRPGSFRPNWQLA 76
>sp|Q99PQ1|TR12A_MOUSE Tripartite motif-containing protein 12A OS=Mus musculus GN=Trim12a
PE=2 SV=1
Length = 284
Score = 46.2 bits (108), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 31/56 (55%), Gaps = 5/56 (8%)
Query: 228 LEYDLTCAVCLDLVFNPYALSCGHLFCKLCACSAASVMVFEGLKSASPDSKCPICR 283
L+ ++TC VCL+L+ P + CGH FC+ C + FE +K CP+CR
Sbjct: 9 LKEEVTCPVCLNLMVKPVSADCGHTFCQGCI-----TLYFESIKCDKKVFICPVCR 59
>sp|Q5D7J2|TRIM5_PAPAN Tripartite motif-containing protein 5 OS=Papio anubis GN=TRIM5 PE=3
SV=1
Length = 497
Score = 46.2 bits (108), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 36/60 (60%), Gaps = 8/60 (13%)
Query: 226 IKLEYDLTCAVCLDLVFNPYALSCGHLFCKLC--ACSAASVMVFEGLKSASPDSKCPICR 283
+ ++ ++TC +CL+L+ P +L CGH FC+ C A S++ EG +S CP+CR
Sbjct: 7 LNVKEEVTCPICLELLTEPLSLPCGHSFCQACITANHRKSMLYKEGERS------CPVCR 60
>sp|Q2YEN0|TRIM5_MACNE Tripartite motif-containing protein 5 OS=Macaca nemestrina GN=TRIM5
PE=3 SV=1
Length = 495
Score = 45.8 bits (107), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 36/60 (60%), Gaps = 8/60 (13%)
Query: 226 IKLEYDLTCAVCLDLVFNPYALSCGHLFCKLC--ACSAASVMVFEGLKSASPDSKCPICR 283
+ ++ ++TC +CL+L+ P +L CGH FC+ C A S++ EG +S CP+CR
Sbjct: 7 LNVKEEVTCPICLELLTEPLSLHCGHSFCQACITANHKKSMLYKEGERS------CPVCR 60
>sp|Q0PF16|TRIM5_MACMU Tripartite motif-containing protein 5 OS=Macaca mulatta GN=TRIM5
PE=1 SV=2
Length = 497
Score = 45.8 bits (107), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 36/60 (60%), Gaps = 8/60 (13%)
Query: 226 IKLEYDLTCAVCLDLVFNPYALSCGHLFCKLC--ACSAASVMVFEGLKSASPDSKCPICR 283
+ ++ ++TC +CL+L+ P +L CGH FC+ C A S++ EG +S CP+CR
Sbjct: 7 LNVKEEVTCPICLELLTEPLSLHCGHSFCQACITANHKKSMLYKEGERS------CPVCR 60
>sp|Q587N6|TRIM5_MACFA Tripartite motif-containing protein 5 OS=Macaca fascicularis
GN=TRIM5 PE=2 SV=1
Length = 495
Score = 45.8 bits (107), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 36/60 (60%), Gaps = 8/60 (13%)
Query: 226 IKLEYDLTCAVCLDLVFNPYALSCGHLFCKLC--ACSAASVMVFEGLKSASPDSKCPICR 283
+ ++ ++TC +CL+L+ P +L CGH FC+ C A S++ EG +S CP+CR
Sbjct: 7 LNVKEEVTCPICLELLTEPLSLHCGHSFCQACITANHKKSMLYKEGERS------CPVCR 60
>sp|Q9ESN2|TRI39_MOUSE E3 ubiquitin-protein ligase TRIM39 OS=Mus musculus GN=Trim39 PE=2
SV=1
Length = 488
Score = 45.8 bits (107), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 36/71 (50%), Gaps = 8/71 (11%)
Query: 228 LEYDLTCAVCLDLVFNPYALSCGHLFCKLCACSAASVMVFEGLKSASPDSKCPICREIIH 287
L+ + +C+VCL+ + P + CGH FCK C +E L+ P CP+CR+
Sbjct: 23 LQVEASCSVCLEYLKEPVIIECGHNFCKACI-----TRWWEDLERDFP---CPVCRKTSR 74
Query: 288 ISSIGAGWQLG 298
S+ QLG
Sbjct: 75 YRSLRPNRQLG 85
>sp|Q2YEN2|TRIM5_MACAS Tripartite motif-containing protein 5 OS=Macaca assamensis GN=TRIM5
PE=3 SV=1
Length = 497
Score = 45.8 bits (107), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 36/60 (60%), Gaps = 8/60 (13%)
Query: 226 IKLEYDLTCAVCLDLVFNPYALSCGHLFCKLC--ACSAASVMVFEGLKSASPDSKCPICR 283
+ ++ ++TC +CL+L+ P +L CGH FC+ C A S++ EG +S CP+CR
Sbjct: 7 LNVKEEVTCPICLELLTEPLSLHCGHSFCQACITANHKKSMLYKEGERS------CPVCR 60
>sp|Q1XHU0|TRI39_PANTR E3 ubiquitin-protein ligase TRIM39 OS=Pan troglodytes GN=TRIM39
PE=3 SV=1
Length = 518
Score = 45.8 bits (107), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 36/71 (50%), Gaps = 8/71 (11%)
Query: 228 LEYDLTCAVCLDLVFNPYALSCGHLFCKLCACSAASVMVFEGLKSASPDSKCPICREIIH 287
L+ + +C+VCL+ + P + CGH FCK C +E L+ P CP+CR+
Sbjct: 23 LQVEASCSVCLEYLKEPVIIECGHNFCKACITRW-----WEDLERDFP---CPVCRKTSR 74
Query: 288 ISSIGAGWQLG 298
S+ QLG
Sbjct: 75 YRSLRPNRQLG 85
>sp|Q6MFZ5|TRI39_RAT E3 ubiquitin-protein ligase TRIM39 OS=Rattus norvegicus GN=Trim39
PE=2 SV=1
Length = 488
Score = 45.8 bits (107), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 36/71 (50%), Gaps = 8/71 (11%)
Query: 228 LEYDLTCAVCLDLVFNPYALSCGHLFCKLCACSAASVMVFEGLKSASPDSKCPICREIIH 287
L+ + +C+VCL+ + P + CGH FCK C +E L+ P CP+CR+
Sbjct: 23 LQVEASCSVCLEYLKEPVIIECGHNFCKACI-----TRWWEDLERDFP---CPVCRKTSR 74
Query: 288 ISSIGAGWQLG 298
S+ QLG
Sbjct: 75 YRSLRPNRQLG 85
>sp|Q9HCM9|TRI39_HUMAN E3 ubiquitin-protein ligase TRIM39 OS=Homo sapiens GN=TRIM39 PE=1
SV=2
Length = 518
Score = 45.4 bits (106), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 36/71 (50%), Gaps = 8/71 (11%)
Query: 228 LEYDLTCAVCLDLVFNPYALSCGHLFCKLCACSAASVMVFEGLKSASPDSKCPICREIIH 287
L+ + +C+VCL+ + P + CGH FCK C +E L+ P CP+CR+
Sbjct: 23 LQVEASCSVCLEYLKEPVIIECGHNFCKACITRW-----WEDLERDFP---CPVCRKTSR 74
Query: 288 ISSIGAGWQLG 298
S+ QLG
Sbjct: 75 YRSLRPNRQLG 85
>sp|Q5RAK3|RN180_PONAB E3 ubiquitin-protein ligase RNF180 OS=Pongo abelii GN=RNF180 PE=2
SV=1
Length = 592
Score = 45.4 bits (106), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 23/54 (42%), Positives = 29/54 (53%), Gaps = 9/54 (16%)
Query: 234 CAVCLDLVFNPYA-LSCGHLFCKLCACSAASVMVFEGLKSASPDSKCPICREII 286
CAVCLD+ FNPY C H+FC+ C + A K + CP+CR II
Sbjct: 432 CAVCLDVYFNPYMCYPCRHIFCEPCLRTLA--------KDNPSSTPCPLCRTII 477
>sp|Q86T96|RN180_HUMAN E3 ubiquitin-protein ligase RNF180 OS=Homo sapiens GN=RNF180 PE=2
SV=2
Length = 592
Score = 45.4 bits (106), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 23/54 (42%), Positives = 29/54 (53%), Gaps = 9/54 (16%)
Query: 234 CAVCLDLVFNPYA-LSCGHLFCKLCACSAASVMVFEGLKSASPDSKCPICREII 286
CAVCLD+ FNPY C H+FC+ C + A K + CP+CR II
Sbjct: 432 CAVCLDVYFNPYMCYPCHHIFCEPCLRTLA--------KDNPSSTPCPLCRTII 477
>sp|Q5D7J1|TRIM5_PANTR Tripartite motif-containing protein 5 OS=Pan troglodytes GN=TRIM5
PE=2 SV=1
Length = 493
Score = 45.1 bits (105), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 35/59 (59%), Gaps = 7/59 (11%)
Query: 226 IKLEYDLTCAVCLDLVFNPYALSCGHLFCKLC-ACSAASVMVFEGLKSASPDSKCPICR 283
+ ++ ++TC +CL+L+ P +L CGH FC+ C + M+ +G +S CP+CR
Sbjct: 7 VNVKEEVTCPICLELLTQPLSLDCGHSFCQACLTANHKKSMLDKG------ESSCPVCR 59
>sp|Q5C8T6|TRIM5_GORGO Tripartite motif-containing protein 5 OS=Gorilla gorilla gorilla
GN=TRIM5 PE=2 SV=1
Length = 493
Score = 45.1 bits (105), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 35/59 (59%), Gaps = 7/59 (11%)
Query: 226 IKLEYDLTCAVCLDLVFNPYALSCGHLFCKLC-ACSAASVMVFEGLKSASPDSKCPICR 283
+ ++ ++TC +CL+L+ P +L CGH FC+ C + M+ +G +S CP+CR
Sbjct: 7 VNVKEEVTCPICLELLTQPLSLDCGHSFCQACLTANHEKSMLDKG------ESSCPVCR 59
>sp|Q1ACD8|TRIM5_PANPA Tripartite motif-containing protein 5 OS=Pan paniscus GN=TRIM5 PE=3
SV=1
Length = 493
Score = 45.1 bits (105), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 35/59 (59%), Gaps = 7/59 (11%)
Query: 226 IKLEYDLTCAVCLDLVFNPYALSCGHLFCKLC-ACSAASVMVFEGLKSASPDSKCPICR 283
+ ++ ++TC +CL+L+ P +L CGH FC+ C + M+ +G +S CP+CR
Sbjct: 7 VNVKEEVTCPICLELLTQPLSLDCGHSFCQACLTANHKKSMLDKG------ESSCPVCR 59
>sp|Q503I2|TRI13_DANRE Tripartite motif-containing 13 OS=Danio rerio GN=trim13 PE=2 SV=1
Length = 404
Score = 45.1 bits (105), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 29/75 (38%), Positives = 39/75 (52%), Gaps = 10/75 (13%)
Query: 228 LEYDLTCAVCLDLVFNPYALSCGHLFCKLCACSAASVMVFEGLKSAS--PDSKCPICR-E 284
LE DLTC +C L +P L C H FCK C + +G +S + P KCP CR E
Sbjct: 4 LEEDLTCPICCCLFEDPRVLPCSHSFCKKCLEG-----ILDGNRSPTWRPPFKCPTCRKE 58
Query: 285 IIH--ISSIGAGWQL 297
+H I+S+ + L
Sbjct: 59 TVHNGIASLQVNYSL 73
>sp|Q9C035|TRIM5_HUMAN Tripartite motif-containing protein 5 OS=Homo sapiens GN=TRIM5 PE=1
SV=1
Length = 493
Score = 45.1 bits (105), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 35/59 (59%), Gaps = 7/59 (11%)
Query: 226 IKLEYDLTCAVCLDLVFNPYALSCGHLFCKLC-ACSAASVMVFEGLKSASPDSKCPICR 283
+ ++ ++TC +CL+L+ P +L CGH FC+ C + M+ +G +S CP+CR
Sbjct: 7 VNVKEEVTCPICLELLTQPLSLDCGHSFCQACLTANHKKSMLDKG------ESSCPVCR 59
>sp|Q9C030|TRIM6_HUMAN Tripartite motif-containing protein 6 OS=Homo sapiens GN=TRIM6 PE=1
SV=1
Length = 488
Score = 45.1 bits (105), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 35/63 (55%), Gaps = 8/63 (12%)
Query: 223 PSSIKLEYDLTCAVCLDLVFNPYALSCGHLFCKLCACSAA--SVMVFEGLKSASPDSKCP 280
P + + ++TC +CL+L+ P ++ CGH FC+ C SV+ EG +S CP
Sbjct: 4 PVLVDIREEVTCPICLELLTEPLSIDCGHSFCQACITPNGRESVIGQEGERS------CP 57
Query: 281 ICR 283
+C+
Sbjct: 58 VCQ 60
>sp|I1YAP6|TRI77_HUMAN Tripartite motif-containing protein 77 OS=Homo sapiens GN=TRIM77
PE=2 SV=2
Length = 450
Score = 45.1 bits (105), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 21/55 (38%), Positives = 34/55 (61%), Gaps = 8/55 (14%)
Query: 231 DLTCAVCLDLVFNPYALSCGHLFCKLCACSAASVMVFEGLKSASPDSKCPICREI 285
+LTC++C D + +P + CGH FC C C +++E + +P+ CP+CREI
Sbjct: 12 ELTCSICTDYLTDPVTICCGHRFCSPCLC-----LLWED--TLTPNC-CPVCREI 58
>sp|Q5C8U3|TRIM5_CERTA Tripartite motif-containing protein 5 OS=Cercopithecus tantalus
GN=TRIM5 PE=2 SV=1
Length = 515
Score = 45.1 bits (105), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 32/58 (55%), Gaps = 4/58 (6%)
Query: 226 IKLEYDLTCAVCLDLVFNPYALSCGHLFCKLCACSAASVMVFEGLKSASPDSKCPICR 283
+ ++ ++TC +CL+L+ P +L CGH FC+ C + E + + CP+CR
Sbjct: 7 VNVKEEVTCPICLELLTEPLSLPCGHSFCQACITANHK----ESMLYKEEERSCPVCR 60
>sp|Q5E9G4|TRI10_BOVIN Tripartite motif-containing protein 10 OS=Bos taurus GN=TRIM10 PE=2
SV=1
Length = 489
Score = 45.1 bits (105), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 34/79 (43%), Gaps = 12/79 (15%)
Query: 224 SSIKLEYDLTCAVCLDLVFNPYALSCGHLFCKLCACSAASVMVFEGLKSASPDSK----C 279
S L ++ C VC + P + CGH FC++C L+ SPD + C
Sbjct: 6 SVTSLADEVNCPVCQGTLREPVTIDCGHNFCRVCLTRY--------LEITSPDPEEPPTC 57
Query: 280 PICREIIHISSIGAGWQLG 298
P+C+E + WQL
Sbjct: 58 PLCKEPFRPGNFRPNWQLA 76
>sp|Q9CYB0|TRI13_MOUSE E3 ubiquitin-protein ligase TRIM13 OS=Mus musculus GN=Trim13 PE=2
SV=1
Length = 407
Score = 45.1 bits (105), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 25/66 (37%), Positives = 31/66 (46%), Gaps = 1/66 (1%)
Query: 228 LEYDLTCAVCLDLVFNPYALSCGHLFCKLCACSAASVMVFEGLKSASPDSKCPICREIIH 287
LE DLTC +C L +P L C H FCK C V L SP KCP CR+
Sbjct: 4 LEEDLTCPICCSLFDDPRVLPCSHNFCKKCLEGLLEGNVRNSLWRPSP-FKCPTCRKETS 62
Query: 288 ISSIGA 293
+ + +
Sbjct: 63 ATGVNS 68
>sp|Q5D7I2|TRIM5_PITPI Tripartite motif-containing protein 5 OS=Pithecia pithecia GN=TRIM5
PE=3 SV=1
Length = 494
Score = 44.7 bits (104), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 35/59 (59%), Gaps = 7/59 (11%)
Query: 226 IKLEYDLTCAVCLDLVFNPYALSCGHLFCKLC-ACSAASVMVFEGLKSASPDSKCPICR 283
+ ++ ++TC +CL+L+ P +L CGH FC+ C + M+ +G +S CP+CR
Sbjct: 7 MNIKEEVTCPICLELLTEPLSLDCGHSFCQACITANHKKSMLHQGERS------CPLCR 59
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.324 0.136 0.430
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 114,329,695
Number of Sequences: 539616
Number of extensions: 4393459
Number of successful extensions: 14062
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 316
Number of HSP's successfully gapped in prelim test: 205
Number of HSP's that attempted gapping in prelim test: 13560
Number of HSP's gapped (non-prelim): 597
length of query: 315
length of database: 191,569,459
effective HSP length: 117
effective length of query: 198
effective length of database: 128,434,387
effective search space: 25430008626
effective search space used: 25430008626
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 61 (28.1 bits)