Query 021263
Match_columns 315
No_of_seqs 289 out of 1776
Neff 7.9
Searched_HMMs 46136
Date Fri Mar 29 08:53:09 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021263.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/021263hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1161 Protein involved in va 100.0 3.8E-28 8.1E-33 218.9 13.8 140 1-174 1-151 (310)
2 PF03105 SPX: SPX domain; Int 99.9 6E-25 1.3E-29 200.0 12.5 163 1-168 1-273 (275)
3 KOG1162 Predicted small molecu 99.9 1.6E-21 3.5E-26 191.4 12.5 147 1-169 1-176 (617)
4 COG5036 SPX domain-containing 99.8 1.9E-20 4.1E-25 172.9 10.1 152 1-185 1-156 (509)
5 TIGR00599 rad18 DNA repair pro 99.4 1.8E-13 3.9E-18 129.7 6.1 88 210-308 5-94 (397)
6 COG5408 SPX domain-containing 99.4 2.9E-12 6.4E-17 115.9 11.1 90 1-95 1-99 (296)
7 PF15227 zf-C3HC4_4: zinc fing 99.4 3.9E-13 8.5E-18 87.5 3.4 42 234-282 1-42 (42)
8 smart00504 Ubox Modified RING 99.3 4.9E-12 1.1E-16 89.8 5.0 61 231-302 1-63 (63)
9 KOG0287 Postreplication repair 99.3 2.4E-12 5.3E-17 116.6 3.1 80 217-307 9-90 (442)
10 PF04564 U-box: U-box domain; 99.3 8.3E-12 1.8E-16 91.5 5.4 68 230-307 3-72 (73)
11 PLN03208 E3 ubiquitin-protein 99.2 2.3E-11 4.9E-16 103.9 4.7 63 229-291 16-83 (193)
12 PF14835 zf-RING_6: zf-RING of 99.1 4.9E-11 1.1E-15 83.1 1.8 59 228-299 4-65 (65)
13 KOG0317 Predicted E3 ubiquitin 99.0 1.4E-10 2.9E-15 103.8 3.9 53 229-292 237-289 (293)
14 KOG0823 Predicted E3 ubiquitin 99.0 1.4E-10 3E-15 100.8 3.0 54 230-291 46-99 (230)
15 COG5432 RAD18 RING-finger-cont 99.0 1.9E-10 4.2E-15 102.4 3.7 79 217-306 11-91 (391)
16 PF13923 zf-C3HC4_2: Zinc fing 99.0 2.6E-10 5.6E-15 73.1 3.1 38 234-282 1-39 (39)
17 PF13920 zf-C3HC4_3: Zinc fing 98.9 6.1E-10 1.3E-14 75.4 3.1 46 231-287 2-48 (50)
18 PHA02929 N1R/p28-like protein; 98.9 9.1E-10 2E-14 97.9 2.7 49 229-288 172-228 (238)
19 PF13639 zf-RING_2: Ring finge 98.9 9.3E-10 2E-14 72.4 1.6 40 233-283 2-44 (44)
20 KOG0320 Predicted E3 ubiquitin 98.8 1.6E-09 3.5E-14 90.4 2.5 50 230-290 130-181 (187)
21 PF00097 zf-C3HC4: Zinc finger 98.8 2.4E-09 5.3E-14 69.2 2.8 40 234-282 1-41 (41)
22 PF13445 zf-RING_UBOX: RING-ty 98.8 2.9E-09 6.2E-14 69.4 2.1 39 234-280 1-43 (43)
23 KOG2164 Predicted E3 ubiquitin 98.7 8.7E-09 1.9E-13 98.8 3.0 55 231-291 186-240 (513)
24 cd00162 RING RING-finger (Real 98.7 1.6E-08 3.4E-13 65.9 3.2 44 233-286 1-45 (45)
25 KOG2177 Predicted E3 ubiquitin 98.7 1.4E-08 3E-13 93.0 3.7 73 226-309 8-80 (386)
26 PHA02926 zinc finger-like prot 98.7 1.5E-08 3.3E-13 87.7 3.6 55 229-288 168-231 (242)
27 COG5574 PEX10 RING-finger-cont 98.6 1.5E-08 3.3E-13 89.6 2.7 54 229-291 213-266 (271)
28 PF14634 zf-RING_5: zinc-RING 98.6 4.4E-08 9.5E-13 64.4 2.7 41 233-284 1-44 (44)
29 smart00184 RING Ring finger. E 98.5 7.7E-08 1.7E-12 60.4 3.3 39 234-282 1-39 (39)
30 KOG0311 Predicted E3 ubiquitin 98.4 3.2E-08 7E-13 90.8 -0.7 54 226-289 38-92 (381)
31 TIGR00570 cdk7 CDK-activating 98.3 5.7E-07 1.2E-11 82.5 3.8 51 230-290 2-57 (309)
32 KOG4159 Predicted E3 ubiquitin 98.3 6E-07 1.3E-11 85.6 3.8 69 229-308 82-157 (398)
33 KOG2660 Locus-specific chromos 98.2 5.3E-07 1.2E-11 82.4 2.5 66 226-302 10-82 (331)
34 PF12678 zf-rbx1: RING-H2 zinc 98.2 1.5E-06 3.3E-11 63.5 3.3 40 233-283 21-73 (73)
35 KOG0978 E3 ubiquitin ligase in 98.2 4.6E-07 9.9E-12 91.0 0.7 55 227-291 639-693 (698)
36 COG5243 HRD1 HRD ubiquitin lig 98.0 3E-06 6.5E-11 78.4 3.2 48 229-287 285-345 (491)
37 KOG0802 E3 ubiquitin ligase [P 98.0 3.4E-06 7.5E-11 84.6 2.4 49 230-289 290-343 (543)
38 KOG4628 Predicted E3 ubiquitin 97.9 6.6E-06 1.4E-10 76.8 3.6 48 232-289 230-280 (348)
39 COG5540 RING-finger-containing 97.9 6.8E-06 1.5E-10 74.2 3.2 49 230-288 322-373 (374)
40 COG5152 Uncharacterized conser 97.9 7.9E-06 1.7E-10 69.5 2.4 48 231-289 196-243 (259)
41 KOG0824 Predicted E3 ubiquitin 97.8 9.7E-06 2.1E-10 73.3 2.3 50 231-290 7-56 (324)
42 KOG0297 TNF receptor-associate 97.8 1.4E-05 3.1E-10 76.8 3.2 75 228-313 18-96 (391)
43 KOG4172 Predicted E3 ubiquitin 97.8 5.4E-06 1.2E-10 55.7 0.1 47 231-287 7-54 (62)
44 COG5222 Uncharacterized conser 97.8 2.4E-05 5.3E-10 70.5 4.2 64 231-304 274-341 (427)
45 PF11789 zf-Nse: Zinc-finger o 97.8 1.4E-05 3.1E-10 55.4 2.0 43 230-281 10-53 (57)
46 KOG2879 Predicted E3 ubiquitin 97.8 2.6E-05 5.7E-10 69.7 4.0 50 229-287 237-287 (298)
47 PF12861 zf-Apc11: Anaphase-pr 97.6 4.9E-05 1.1E-09 56.6 3.5 37 244-288 46-83 (85)
48 KOG1813 Predicted E3 ubiquitin 97.5 3.7E-05 8E-10 69.4 0.8 48 231-289 241-288 (313)
49 KOG1002 Nucleotide excision re 97.3 0.0006 1.3E-08 66.1 7.3 54 230-289 535-588 (791)
50 KOG0804 Cytoplasmic Zn-finger 97.3 0.00012 2.6E-09 69.6 2.2 49 227-288 171-223 (493)
51 KOG4265 Predicted E3 ubiquitin 97.1 0.00032 7E-09 65.2 3.1 49 229-288 288-337 (349)
52 PF11793 FANCL_C: FANCL C-term 97.0 0.00027 5.9E-09 51.1 1.0 56 231-288 2-67 (70)
53 KOG4367 Predicted Zn-finger pr 96.9 0.00041 8.9E-09 65.7 1.5 32 229-260 2-33 (699)
54 KOG1039 Predicted E3 ubiquitin 96.8 0.00072 1.6E-08 63.5 2.4 55 229-287 159-221 (344)
55 KOG1785 Tyrosine kinase negati 96.7 0.00087 1.9E-08 62.9 2.0 49 232-289 370-418 (563)
56 KOG4275 Predicted E3 ubiquitin 96.6 0.00046 1E-08 62.3 -0.1 42 231-287 300-342 (350)
57 PF14447 Prok-RING_4: Prokaryo 96.5 0.0018 3.8E-08 44.0 1.9 48 230-290 6-53 (55)
58 KOG0827 Predicted E3 ubiquitin 96.4 0.0024 5.2E-08 59.9 3.3 50 232-289 5-58 (465)
59 KOG0828 Predicted E3 ubiquitin 96.3 0.002 4.3E-08 62.1 2.1 50 229-288 569-635 (636)
60 KOG1571 Predicted E3 ubiquitin 96.3 0.0022 4.8E-08 59.7 2.1 44 230-287 304-347 (355)
61 COG5219 Uncharacterized conser 96.1 0.0018 4E-08 66.7 0.7 51 228-287 1466-1523(1525)
62 KOG0825 PHD Zn-finger protein 96.1 0.0011 2.4E-08 67.0 -0.9 49 230-289 122-173 (1134)
63 KOG3002 Zn finger protein [Gen 96.1 0.005 1.1E-07 57.0 3.4 72 228-314 45-117 (299)
64 KOG1645 RING-finger-containing 96.0 0.0047 1E-07 58.3 2.9 53 230-291 3-60 (463)
65 KOG3039 Uncharacterized conser 96.0 0.0045 9.8E-08 54.7 2.4 51 230-291 220-274 (303)
66 KOG4739 Uncharacterized protei 95.9 0.0025 5.5E-08 56.4 0.7 60 232-304 4-65 (233)
67 KOG1734 Predicted RING-contain 95.9 0.002 4.4E-08 57.6 -0.1 52 230-290 223-284 (328)
68 KOG4692 Predicted E3 ubiquitin 95.8 0.0059 1.3E-07 56.6 2.7 49 229-288 420-468 (489)
69 smart00744 RINGv The RING-vari 95.8 0.01 2.2E-07 39.8 3.0 42 233-283 1-49 (49)
70 PF14570 zf-RING_4: RING/Ubox 95.8 0.0067 1.5E-07 40.2 2.0 43 234-286 1-47 (48)
71 KOG3800 Predicted E3 ubiquitin 95.7 0.0088 1.9E-07 54.2 3.0 48 233-290 2-54 (300)
72 KOG0826 Predicted E3 ubiquitin 95.7 0.0064 1.4E-07 56.0 2.1 48 229-287 298-346 (357)
73 KOG4185 Predicted E3 ubiquitin 95.6 0.014 3E-07 54.1 4.5 62 231-302 3-77 (296)
74 KOG1001 Helicase-like transcri 95.6 0.0038 8.1E-08 64.0 0.3 48 232-289 455-502 (674)
75 COG5194 APC11 Component of SCF 94.9 0.026 5.6E-07 41.2 2.9 45 232-287 32-81 (88)
76 PF04641 Rtf2: Rtf2 RING-finge 94.8 0.048 1E-06 49.7 5.1 51 229-291 111-165 (260)
77 KOG1493 Anaphase-promoting com 94.5 0.017 3.7E-07 41.8 1.2 49 231-287 31-81 (84)
78 PF07800 DUF1644: Protein of u 94.5 0.043 9.4E-07 45.6 3.6 62 230-291 1-95 (162)
79 COG5236 Uncharacterized conser 94.4 0.027 5.8E-07 52.3 2.3 49 228-285 58-106 (493)
80 KOG3161 Predicted E3 ubiquitin 94.2 0.016 3.4E-07 57.8 0.5 34 228-261 8-45 (861)
81 KOG1814 Predicted E3 ubiquitin 94.1 0.057 1.2E-06 51.4 4.0 54 229-285 182-238 (445)
82 KOG2817 Predicted E3 ubiquitin 94.0 0.038 8.3E-07 52.3 2.7 51 228-286 331-384 (394)
83 KOG3970 Predicted E3 ubiquitin 93.9 0.11 2.4E-06 45.5 5.0 56 231-289 50-107 (299)
84 PF05290 Baculo_IE-1: Baculovi 93.7 0.06 1.3E-06 43.4 2.8 52 231-290 80-135 (140)
85 KOG1812 Predicted E3 ubiquitin 92.2 0.076 1.6E-06 51.1 1.8 71 230-305 145-225 (384)
86 KOG2114 Vacuolar assembly/sort 92.0 0.13 2.9E-06 53.0 3.4 41 230-284 839-880 (933)
87 KOG4362 Transcriptional regula 91.7 0.073 1.6E-06 54.1 1.1 54 230-291 20-73 (684)
88 COG5220 TFB3 Cdk activating ki 91.6 0.071 1.5E-06 47.1 0.8 46 230-285 9-62 (314)
89 PF10367 Vps39_2: Vacuolar sor 91.6 0.068 1.5E-06 41.4 0.6 31 229-259 76-108 (109)
90 KOG2932 E3 ubiquitin ligase in 91.2 0.089 1.9E-06 48.2 1.1 44 232-288 91-135 (389)
91 KOG1941 Acetylcholine receptor 91.1 0.088 1.9E-06 49.7 0.9 47 230-285 364-414 (518)
92 PF02891 zf-MIZ: MIZ/SP-RING z 90.9 0.2 4.3E-06 33.6 2.2 48 231-285 2-50 (50)
93 KOG1428 Inhibitor of type V ad 89.7 0.26 5.7E-06 53.7 3.1 60 229-289 3484-3546(3738)
94 COG5175 MOT2 Transcriptional r 89.7 0.24 5.2E-06 46.0 2.4 51 230-291 14-68 (480)
95 KOG1952 Transcription factor N 89.2 0.3 6.4E-06 50.6 3.0 53 229-285 189-245 (950)
96 PHA03096 p28-like protein; Pro 88.4 0.23 4.9E-06 45.8 1.3 50 232-286 179-236 (284)
97 KOG1100 Predicted E3 ubiquitin 88.3 0.24 5.2E-06 43.5 1.4 40 234-288 161-201 (207)
98 KOG2930 SCF ubiquitin ligase, 88.0 0.33 7.2E-06 37.3 1.8 27 248-285 80-106 (114)
99 KOG3039 Uncharacterized conser 88.0 0.43 9.2E-06 42.5 2.7 35 228-262 40-74 (303)
100 KOG1940 Zn-finger protein [Gen 87.8 0.24 5.2E-06 45.2 1.1 58 232-301 159-221 (276)
101 PF08746 zf-RING-like: RING-li 87.4 0.66 1.4E-05 30.0 2.7 40 234-282 1-43 (43)
102 COG5109 Uncharacterized conser 87.3 0.47 1E-05 43.7 2.7 54 224-285 329-385 (396)
103 KOG0298 DEAD box-containing he 85.7 0.19 4.2E-06 54.1 -0.7 50 225-285 1147-1197(1394)
104 KOG3579 Predicted E3 ubiquitin 82.9 1.3 2.9E-05 40.3 3.4 34 230-263 267-304 (352)
105 PHA02825 LAP/PHD finger-like p 82.2 1.9 4.2E-05 36.0 3.8 49 230-288 7-60 (162)
106 PF05883 Baculo_RING: Baculovi 82.1 0.6 1.3E-05 37.9 0.9 32 231-262 26-66 (134)
107 KOG1815 Predicted E3 ubiquitin 82.1 0.95 2.1E-05 44.5 2.4 59 230-291 69-130 (444)
108 PF10272 Tmpp129: Putative tra 81.7 0.87 1.9E-05 43.3 1.9 42 249-290 311-354 (358)
109 KOG3268 Predicted E3 ubiquitin 80.7 1.4 3.1E-05 37.3 2.6 60 231-290 165-231 (234)
110 KOG4445 Uncharacterized conser 80.6 0.65 1.4E-05 42.6 0.7 60 230-289 114-188 (368)
111 KOG3113 Uncharacterized conser 78.6 3.8 8.3E-05 36.8 4.8 49 230-291 110-162 (293)
112 PHA02862 5L protein; Provision 76.9 3.2 6.9E-05 34.1 3.5 48 232-289 3-55 (156)
113 KOG3899 Uncharacterized conser 72.0 1.3 2.8E-05 40.5 0.1 43 249-291 325-369 (381)
114 PF10497 zf-4CXXC_R1: Zinc-fin 70.8 4.9 0.00011 31.3 3.1 34 250-285 37-70 (105)
115 PF07191 zinc-ribbons_6: zinc- 70.8 0.28 6.1E-06 35.2 -3.5 40 232-287 2-41 (70)
116 PF03854 zf-P11: P-11 zinc fin 69.6 2.1 4.5E-05 28.2 0.7 32 246-288 15-47 (50)
117 KOG2034 Vacuolar sorting prote 68.4 2.7 5.8E-05 44.1 1.5 36 227-262 813-850 (911)
118 PF10235 Cript: Microtubule-as 67.7 3.8 8.3E-05 31.0 1.8 39 231-289 44-82 (90)
119 PF10571 UPF0547: Uncharacteri 67.4 2.7 5.8E-05 24.1 0.7 21 233-253 2-24 (26)
120 PF12906 RINGv: RING-variant d 66.1 3.2 6.9E-05 27.3 1.0 40 234-282 1-47 (47)
121 COG0068 HypF Hydrogenase matur 64.7 3 6.6E-05 42.8 1.0 57 230-289 100-186 (750)
122 PRK04023 DNA polymerase II lar 64.6 5.1 0.00011 42.8 2.7 61 230-303 625-691 (1121)
123 COG3813 Uncharacterized protei 64.0 5.2 0.00011 28.8 1.8 31 248-291 26-56 (84)
124 PF05605 zf-Di19: Drought indu 62.2 5.3 0.00011 26.9 1.6 40 230-285 1-40 (54)
125 COG5183 SSM4 Protein involved 59.5 13 0.00028 38.9 4.4 67 229-304 10-94 (1175)
126 KOG2068 MOT2 transcription fac 59.0 6.4 0.00014 36.8 2.0 47 231-288 249-299 (327)
127 PF14569 zf-UDP: Zinc-binding 57.5 13 0.00028 27.3 2.9 49 230-288 8-63 (80)
128 smart00734 ZnF_Rad18 Rad18-lik 56.4 4.4 9.5E-05 23.2 0.3 20 277-296 2-21 (26)
129 KOG0825 PHD Zn-finger protein 54.4 8 0.00017 40.2 2.0 52 230-286 95-153 (1134)
130 COG1592 Rubrerythrin [Energy p 51.1 9.5 0.00021 32.3 1.7 12 274-285 147-158 (166)
131 COG5627 MMS21 DNA repair prote 49.4 19 0.00041 32.1 3.2 74 231-313 189-267 (275)
132 PF14446 Prok-RING_1: Prokaryo 48.9 16 0.00034 24.9 2.1 31 230-260 4-38 (54)
133 PF06906 DUF1272: Protein of u 47.2 36 0.00077 23.4 3.6 44 233-289 7-54 (57)
134 PF15616 TerY-C: TerY-C metal 44.5 13 0.00028 30.2 1.4 46 226-288 72-117 (131)
135 PF07975 C1_4: TFIIH C1-like d 44.3 30 0.00066 23.2 3.0 25 248-283 26-50 (51)
136 KOG2979 Protein involved in DN 44.1 11 0.00025 33.9 1.1 46 231-285 176-222 (262)
137 PF14353 CpXC: CpXC protein 43.9 16 0.00035 29.1 2.0 50 232-289 2-51 (128)
138 KOG2169 Zn-finger transcriptio 42.6 18 0.0004 37.3 2.5 70 227-303 302-374 (636)
139 PF04216 FdhE: Protein involve 42.1 4.8 0.0001 37.2 -1.7 44 231-285 172-220 (290)
140 KOG4185 Predicted E3 ubiquitin 41.5 4.8 0.0001 37.1 -1.7 45 231-285 207-265 (296)
141 TIGR01562 FdhE formate dehydro 40.8 7.9 0.00017 36.1 -0.4 11 231-241 184-194 (305)
142 cd00350 rubredoxin_like Rubred 40.7 19 0.00041 21.6 1.4 11 275-285 16-26 (33)
143 TIGR00143 hypF [NiFe] hydrogen 40.3 14 0.0003 38.7 1.2 56 230-288 67-152 (711)
144 KOG2113 Predicted RNA binding 40.0 21 0.00046 33.2 2.2 48 227-287 339-387 (394)
145 PF01363 FYVE: FYVE zinc finge 39.3 8.5 0.00018 27.1 -0.4 32 230-261 8-43 (69)
146 PF06844 DUF1244: Protein of u 38.9 19 0.00041 25.5 1.3 12 252-263 11-22 (68)
147 PRK14714 DNA polymerase II lar 38.6 22 0.00047 39.3 2.4 64 231-302 667-736 (1337)
148 cd00729 rubredoxin_SM Rubredox 38.6 20 0.00043 21.8 1.3 11 275-285 17-27 (34)
149 PF03833 PolC_DP2: DNA polymer 38.3 10 0.00023 39.8 0.0 47 230-289 654-705 (900)
150 KOG4642 Chaperone-dependent E3 38.2 33 0.00072 31.0 3.1 67 229-305 209-277 (284)
151 KOG1814 Predicted E3 ubiquitin 37.9 57 0.0012 31.6 4.8 26 131-156 324-349 (445)
152 PF13097 CENP-U: CENP-A nucleo 37.8 2.6E+02 0.0056 23.9 9.0 66 82-154 108-173 (175)
153 smart00064 FYVE Protein presen 36.7 26 0.00056 24.5 1.8 31 231-261 10-44 (68)
154 KOG3053 Uncharacterized conser 35.7 46 0.001 30.2 3.6 58 228-288 17-83 (293)
155 PF04423 Rad50_zn_hook: Rad50 35.6 14 0.0003 24.8 0.3 22 277-298 21-42 (54)
156 cd00065 FYVE FYVE domain; Zinc 35.4 22 0.00047 23.8 1.2 30 232-261 3-36 (57)
157 KOG4718 Non-SMC (structural ma 35.3 19 0.00042 31.5 1.1 44 230-284 180-224 (235)
158 KOG1812 Predicted E3 ubiquitin 34.9 19 0.00041 34.8 1.1 31 231-261 306-341 (384)
159 PRK03564 formate dehydrogenase 33.9 13 0.00029 34.7 -0.1 32 230-261 186-222 (309)
160 KOG2231 Predicted E3 ubiquitin 33.5 32 0.00069 35.5 2.5 52 233-289 2-54 (669)
161 PF10146 zf-C4H2: Zinc finger- 33.2 32 0.0007 30.7 2.3 30 76-105 30-59 (230)
162 PF00628 PHD: PHD-finger; Int 32.4 11 0.00023 24.8 -0.7 47 233-284 1-50 (51)
163 KOG2042 Ubiquitin fusion degra 32.4 79 0.0017 34.1 5.2 69 229-308 868-939 (943)
164 KOG3799 Rab3 effector RIM1 and 32.4 22 0.00049 28.8 1.0 24 229-257 63-87 (169)
165 PF15389 DUF4612: Domain of un 32.3 35 0.00075 27.0 2.0 18 72-89 87-104 (115)
166 PLN02189 cellulose synthase 31.1 36 0.00078 36.9 2.5 47 231-287 34-87 (1040)
167 PLN02400 cellulose synthase 31.0 35 0.00075 37.2 2.4 47 231-287 36-89 (1085)
168 PLN02436 cellulose synthase A 30.8 36 0.00079 37.0 2.5 47 231-287 36-89 (1094)
169 KOG1729 FYVE finger containing 30.4 19 0.00041 33.3 0.4 56 229-288 166-226 (288)
170 PF04710 Pellino: Pellino; In 30.3 17 0.00037 34.9 0.0 49 231-287 277-339 (416)
171 PRK14559 putative protein seri 30.3 23 0.00051 36.6 1.0 7 233-239 3-9 (645)
172 PF13719 zinc_ribbon_5: zinc-r 30.2 24 0.00053 21.8 0.7 13 232-244 3-15 (37)
173 KOG4451 Uncharacterized conser 29.6 39 0.00084 30.0 2.1 28 252-290 250-277 (286)
174 KOG0309 Conserved WD40 repeat- 28.8 38 0.00081 35.4 2.1 33 231-263 1028-1062(1081)
175 TIGR02098 MJ0042_CXXC MJ0042 f 27.2 26 0.00056 21.5 0.4 12 275-286 24-35 (38)
176 KOG2462 C2H2-type Zn-finger pr 26.0 34 0.00073 31.3 1.1 57 230-289 160-228 (279)
177 smart00647 IBR In Between Ring 25.9 18 0.0004 24.6 -0.5 14 248-261 45-58 (64)
178 TIGR00622 ssl1 transcription f 24.9 73 0.0016 25.1 2.7 41 232-283 56-110 (112)
179 COG4647 AcxC Acetone carboxyla 24.8 36 0.00079 27.5 1.0 10 247-256 73-82 (165)
180 PLN02638 cellulose synthase A 24.6 58 0.0013 35.5 2.7 47 231-287 17-70 (1079)
181 KOG0314 Predicted E3 ubiquitin 24.6 34 0.00074 33.6 1.0 36 226-261 214-252 (448)
182 KOG3476 Microtubule-associated 24.3 12 0.00025 28.0 -1.8 39 231-289 54-92 (100)
183 PLN02195 cellulose synthase A 24.0 53 0.0011 35.5 2.2 47 231-287 6-59 (977)
184 PF13717 zinc_ribbon_4: zinc-r 23.1 48 0.001 20.4 1.1 11 232-242 3-13 (36)
185 PF05502 Dynactin_p62: Dynacti 22.9 35 0.00075 34.1 0.7 11 231-241 26-36 (483)
186 KOG3726 Uncharacterized conser 22.9 45 0.00097 34.4 1.4 39 232-285 655-698 (717)
187 KOG0289 mRNA splicing factor [ 22.8 63 0.0014 31.6 2.3 45 232-287 1-46 (506)
188 PF01428 zf-AN1: AN1-like Zinc 22.8 42 0.0009 21.4 0.8 25 234-258 1-28 (43)
189 PF09297 zf-NADH-PPase: NADH p 22.8 23 0.0005 21.0 -0.4 28 251-285 3-30 (32)
190 smart00154 ZnF_AN1 AN1-like Zi 22.5 58 0.0013 20.4 1.4 23 234-256 1-25 (39)
191 PF00036 EF-hand_1: EF hand; 21.9 68 0.0015 18.5 1.5 16 21-36 13-28 (29)
192 PF09538 FYDLN_acid: Protein o 21.7 56 0.0012 25.6 1.5 14 229-242 7-20 (108)
193 COG3492 Uncharacterized protei 21.6 51 0.0011 24.9 1.2 12 252-263 42-53 (104)
194 COG4098 comFA Superfamily II D 20.9 46 0.00099 31.8 1.0 31 229-259 37-68 (441)
195 smart00132 LIM Zinc-binding do 20.5 65 0.0014 19.0 1.4 10 234-243 2-11 (39)
196 PRK00420 hypothetical protein; 20.5 41 0.00088 26.6 0.5 12 231-242 23-34 (112)
197 KOG3362 Predicted BBOX Zn-fing 20.1 30 0.00065 28.5 -0.4 28 231-260 118-147 (156)
198 PLN02915 cellulose synthase A 20.1 75 0.0016 34.6 2.5 48 230-287 14-68 (1044)
199 PF02318 FYVE_2: FYVE-type zin 20.0 56 0.0012 25.8 1.2 45 231-285 54-103 (118)
No 1
>KOG1161 consensus Protein involved in vacuolar polyphosphate accumulation, contains SPX domain [Inorganic ion transport and metabolism]
Probab=99.95 E-value=3.8e-28 Score=218.95 Aligned_cols=140 Identities=24% Similarity=0.253 Sum_probs=109.4
Q ss_pred CCchhhhhhhHhhhhhhhhccCCccchHHHHHHHhhcccCCCCCCCcCcccccccccccchhhhhhhhccchhhhhhHHH
Q 021263 1 MKFGETFTEYLHGDQERFLDKCSHVEYKRLKKVLKSCRTCKGLHDSACKTEQQWDEGKDISESQLCQCQSSCQLCDHMFF 80 (315)
Q Consensus 1 MKFGk~l~~~~~~~~~~~~~~~~yi~Yk~LKk~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ff 80 (315)
|||||.|++.+.||| +.+|||||.|||+||+... +.....+ +.+ .+..|+
T Consensus 1 MkFGk~L~~~~l~ew-----~~~yinYk~LKK~lK~~~~--~~~~~~~-------~~~----------------~e~dFv 50 (310)
T KOG1161|consen 1 MKFGKYLKEELLPEW-----KDKYINYKELKKLLKQYSI--QTADSSP-------DSR----------------DESDFV 50 (310)
T ss_pred CchhHHHHHhhhhhH-----hhhhcCHHHHHHHHHHhcc--ccccCCc-------ccc----------------hHHHHH
Confidence 999999999999988 9999999999999999875 2211111 000 147899
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh-----------hhhHHHHHHHHhhhhhcHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021263 81 SELMKEASDIAGCFSSRARHLLHLHVA-----------SGMQRYVLRIRQCFKNDQTAMIEEGRVLIEYIIMNAIAIRKI 149 (315)
Q Consensus 81 ~~L~~El~kv~~f~~~r~~~l~~~~~~-----------~~~~~~~~~l~~~~~~~~~~~~~e~~~L~~f~~lN~~~~rki 149 (315)
++||+||+||++|+.++.+++...... +.....+..++. .+.+++.|+++|.+|++||+|||+||
T Consensus 51 ~~Ld~ELEKv~~F~lek~~el~~Rl~~L~e~~~~~~~~~~~~~~~~~lr~----~l~~~~~em~~L~~fs~LN~tGf~KI 126 (310)
T KOG1161|consen 51 RLLDAELEKVNGFQLEKESELIIRLKELEEKIDALSLEPPSAEEMKELRE----ELVDFHGEMVLLENFSRLNYTGFAKI 126 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCcchhHHHHHHH----HHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 999999999999999988776653211 111223344554 56889999999999999999999999
Q ss_pred hhhhhhhhccccCcchhhhhHHHHH
Q 021263 150 LKKYDKVHKSVNGKNFKSKMRAEHI 174 (315)
Q Consensus 150 lKK~dk~~~~~~~~~~~~~~~~~~i 174 (315)
||||||+++......|..++...|+
T Consensus 127 LKK~DKrtg~~l~~~f~~~l~~~Pf 151 (310)
T KOG1161|consen 127 LKKHDKRTGYRLRPYFQVRLLHQPF 151 (310)
T ss_pred HHHHhcccccccccHHHHHHHhCCC
Confidence 9999999998888888887766655
No 2
>PF03105 SPX: SPX domain; InterPro: IPR004331 The SPX domain is named after SYG1/Pho81/XPR1 proteins. This 180 residue length domain is found at the amino terminus of a variety of proteins. In the yeast protein SYG1, the N terminus directly binds to the G- protein beta subunit and inhibits transduction of the mating pheromone signal [] suggesting that all the members of this family are involved in G-protein associated signal transduction. The C-terminal of these proteins often have an EXS domain (IPR004342 from INTERPRO) []. The N-termini of several proteins involved in the regulation of phosphate transport, including the putative phosphate level sensors PHO81 from Saccharomyces cerevisiae and NUC-2 from Neurospora crassa, are also members of this family [, ]. NUC-2 contains several ankyrin repeats (IPR002110 from INTERPRO). Several members of this family are the XPR1 proteins: the xenotropic and polytropic retrovirus receptor confers susceptibility to infection with Murine leukemia virus (MLV) []. The similarity between SYG1, phosphate regulators and XPR1 sequences has been previously noted, as has the additional similarity to several predicted proteins, of unknown function, from Drosophila melanogaster, Arabidopsis thaliana, Caenorhabditis elegans, Schizosaccharomyces pombe, and Saccharomyces cerevisiae [, ]. In addition, given the similarities between XPR1 and SYG1 and phosphate regulatory proteins, it has been proposed that XPR1 might be involved in G-protein associated signal transduction [, , ] and may itself function as a phosphate sensor [].
Probab=99.92 E-value=6e-25 Score=200.01 Aligned_cols=163 Identities=23% Similarity=0.322 Sum_probs=104.5
Q ss_pred CCchhhhhhhHhhhhhhhhccCCccchHHHHHHHhhcccCCCCCCCcCc---------------------cccccccccc
Q 021263 1 MKFGETFTEYLHGDQERFLDKCSHVEYKRLKKVLKSCRTCKGLHDSACK---------------------TEQQWDEGKD 59 (315)
Q Consensus 1 MKFGk~l~~~~~~~~~~~~~~~~yi~Yk~LKk~ik~~~~~~~~~~~~~~---------------------~~~~~~~~~~ 59 (315)
|||||+|+.+++||| +.+|||||.|||+||++............ ..........
T Consensus 1 MKFgk~L~~~~vpEW-----~~~YidYk~LKk~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 75 (275)
T PF03105_consen 1 MKFGKQLQENAVPEW-----RDKYIDYKQLKKLIKRIQNEKESLGLSAETLSSISISSSSSSSSRSSSNSFESTSPSSSN 75 (275)
T ss_pred CCchHHHHHhcCHHH-----HHHhCCHHHHHHHHHHHHhhhhcccccccccchhhhhhhhhccccccccccccccccccc
Confidence 999999999999988 88999999999999999862111000000 0000000000
Q ss_pred ch-hhhhhhhccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh--h--------------------------
Q 021263 60 IS-ESQLCQCQSSCQLCDHMFFSELMKEASDIAGCFSSRARHLLHLHVASG--M-------------------------- 110 (315)
Q Consensus 60 ~~-~~~~~~~~~~~~~~~~~Ff~~L~~El~kv~~f~~~r~~~l~~~~~~~~--~-------------------------- 110 (315)
.. ..............+..||..|+.||+||+.||.++..++........ +
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~F~~~L~~El~KVn~Fy~~k~~el~~~~~~L~~ql~~l~~~~~~~~~~~~~~~~~~~~~~~ 155 (275)
T PF03105_consen 76 TSPSSSNSEQNEDNEESEEEFFELLDEELEKVNDFYKEKEKELRERLEELQKQLEELREQRSKSSDKYNWNQSSQLSSSS 155 (275)
T ss_pred ccccccccchhhhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccccccccchhhcccc
Confidence 00 000000111233467899999999999999999998766554210000 0
Q ss_pred ------------------------------------------------------------HHHHHHHHhhhhhcHHHHHH
Q 021263 111 ------------------------------------------------------------QRYVLRIRQCFKNDQTAMIE 130 (315)
Q Consensus 111 ------------------------------------------------------------~~~~~~l~~~~~~~~~~~~~ 130 (315)
......-+..+.....++..
T Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~e~y~ 235 (275)
T PF03105_consen 156 NIFSSSSSASAGSSNSSSASRRSQRFSSESSKQSSNSESDAESDNNRGDRSSDKPFLSSSQKSLKKARKQLKKAFIELYR 235 (275)
T ss_pred ccccCccccccCCccccccccccccchhhhhhccCCCCcccccccccccccccccccccchhhHHHHHHHHHHHHHHHHH
Confidence 00111112222234477788
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhhccccCcchhhh
Q 021263 131 EGRVLIEYIIMNAIAIRKILKKYDKVHKSVNGKNFKSK 168 (315)
Q Consensus 131 e~~~L~~f~~lN~~~~rkilKK~dk~~~~~~~~~~~~~ 168 (315)
++.+|++|+.||.||||||||||||+++......|+..
T Consensus 236 ~l~~Lk~f~~LN~taf~KIlKK~DK~~~~~~~~~y~~~ 273 (275)
T PF03105_consen 236 ELELLKSFVELNRTAFRKILKKYDKVTGTSLSDDYMEE 273 (275)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccccchHhhhhc
Confidence 88999999999999999999999999999888888764
No 3
>KOG1162 consensus Predicted small molecule transporter [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.86 E-value=1.6e-21 Score=191.41 Aligned_cols=147 Identities=22% Similarity=0.325 Sum_probs=105.5
Q ss_pred CCchhhhhhhHhhhhhhhhccCCccchHHHHHHHhhcccCCCCCCCcCcccccccccccchhhhhhhhccchhhhhhHHH
Q 021263 1 MKFGETFTEYLHGDQERFLDKCSHVEYKRLKKVLKSCRTCKGLHDSACKTEQQWDEGKDISESQLCQCQSSCQLCDHMFF 80 (315)
Q Consensus 1 MKFGk~l~~~~~~~~~~~~~~~~yi~Yk~LKk~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ff 80 (315)
|||||.|..+++||| +..||||+.||++||++.. ..+.... .+ .....+...+++..||
T Consensus 1 MKFgk~~~~q~~pEW-----~~ay~dY~~lK~~l~~i~~--~~~~~~~------t~--------~~~~~~~~~~~~~~Ff 59 (617)
T KOG1162|consen 1 MKFGKELESQLVPEW-----RQAYIDYKYLKKLLKEIIE--NKPSSEE------TT--------FLMVSEEGGEFEEVFF 59 (617)
T ss_pred CcchHHHHHhcCHHH-----HHHhhhHHHHHHHHHHHHh--cCCCcCc------cH--------HHHHHHhhhhhHHHHH
Confidence 999999999999988 8889999999999999987 2221100 00 0111124556789999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh--hhh---------------------------HHHHHHHHhhhhhcHHHHHHH
Q 021263 81 SELMKEASDIAGCFSSRARHLLHLHVA--SGM---------------------------QRYVLRIRQCFKNDQTAMIEE 131 (315)
Q Consensus 81 ~~L~~El~kv~~f~~~r~~~l~~~~~~--~~~---------------------------~~~~~~l~~~~~~~~~~~~~e 131 (315)
..||.|+.|||.||.+++++..+.+.. .+. .+.+.+..+..+.+..++.+-
T Consensus 60 ~~ld~el~Kvn~Fy~~k~~e~~~~~~~L~~ql~~~~~~r~~~~~~~~~~~~~~~~~~~f~~~~~~~e~~lk~af~Efy~~ 139 (617)
T KOG1162|consen 60 RRLDEELNKVNKFYKEKVKEAREEAEELNKQLDALIALRVKSRSSVDISDRAARLRGKFTKVLRKAEEKLKLAFSEFYLK 139 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccccccchhhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999998776552110 000 011122222233344667777
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhhccccCcchhhhh
Q 021263 132 GRVLIEYIIMNAIAIRKILKKYDKVHKSVNGKNFKSKM 169 (315)
Q Consensus 132 ~~~L~~f~~lN~~~~rkilKK~dk~~~~~~~~~~~~~~ 169 (315)
+..|++|+.||.+|||||+|||||.++... ..|++.+
T Consensus 140 L~llk~y~~lN~~~f~KI~KKyDK~~~~~~-~~~~~~v 176 (617)
T KOG1162|consen 140 LRLLKNYQFLNVTAFRKILKKYDKITSRDA-KRYVKMV 176 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcccch-HHHHHHH
Confidence 789999999999999999999999999877 6666555
No 4
>COG5036 SPX domain-containing protein involved in vacuolar polyphosphate accumulation [Inorganic ion transport and metabolism]
Probab=99.83 E-value=1.9e-20 Score=172.85 Aligned_cols=152 Identities=23% Similarity=0.329 Sum_probs=109.6
Q ss_pred CCchhhhhhhHhhhhhhhhccCCccchHHHHHHHhhcccCCCCCCCcCcccccccccccchhhhhhhhccchhhhhhHHH
Q 021263 1 MKFGETFTEYLHGDQERFLDKCSHVEYKRLKKVLKSCRTCKGLHDSACKTEQQWDEGKDISESQLCQCQSSCQLCDHMFF 80 (315)
Q Consensus 1 MKFGk~l~~~~~~~~~~~~~~~~yi~Yk~LKk~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ff 80 (315)
|+||+.|.+.++++| +.+||||..|||+||.-.. ...|.+.. +..|.
T Consensus 1 M~Fg~~L~~~ly~p~-----k~~YinYe~LK~~lK~~~~-----------~~~w~e~d-----------------EsdFV 47 (509)
T COG5036 1 MRFGKKLKNNLYPPY-----KYSYINYENLKKLLKESEE-----------EGSWSESD-----------------ESDFV 47 (509)
T ss_pred CchhHHHHhccCccc-----ccccCCHHHHHHHHhhccc-----------cCCCcccc-----------------hHHHH
Confidence 999999999999977 9999999999999998332 11143322 36899
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH--HHhhhhHHHHHHHHhh-hhhcHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhh
Q 021263 81 SELMKEASDIAGCFSSRARHLLHL--HVASGMQRYVLRIRQC-FKNDQTAMIEEGRVLIEYIIMNAIAIRKILKKYDKVH 157 (315)
Q Consensus 81 ~~L~~El~kv~~f~~~r~~~l~~~--~~~~~~~~~~~~l~~~-~~~~~~~~~~e~~~L~~f~~lN~~~~rkilKK~dk~~ 157 (315)
.+||+||+||.+|-.++..++.+. ++..+..+.+..+-.. +.....+-..++++|.+|.+||+|||.||+|||||.+
T Consensus 48 e~Ld~eLeKVY~F~~~k~~ev~erl~~leeq~~~~i~~~ds~~~~~~LeE~L~~v~~l~kF~RLN~tGF~KIvKKHDK~~ 127 (509)
T COG5036 48 EELDKELEKVYGFQLSKYSEVMERLRTLEEQTDEAIQELDSDNFPKILEEELDTVHDLAKFSRLNFTGFKKIVKKHDKHT 127 (509)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHhhcccCCcchhHHHHHHHHHHHHHhhhhhhhHHHHHHHHhhcCCC
Confidence 999999999999999998887764 2222222222222111 1111233334677999999999999999999999999
Q ss_pred ccccCcchhhhhHHHHHHhh-cchhhhhc
Q 021263 158 KSVNGKNFKSKMRAEHIELL-QSPWLIEL 185 (315)
Q Consensus 158 ~~~~~~~~~~~~~~~~i~~l-~sp~l~e~ 185 (315)
+....+.|..++.+.|.... .+|.+.+.
T Consensus 128 ~y~lkpvfqvrLk~~p~~se~yd~Ll~ki 156 (509)
T COG5036 128 GYSLKPVFQVRLKAKPFFSEQYDPLLYKI 156 (509)
T ss_pred CceechhHHHHhccCCcchhhhcHHHHHH
Confidence 99888888888776665333 45554443
No 5
>TIGR00599 rad18 DNA repair protein rad18. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.42 E-value=1.8e-13 Score=129.68 Aligned_cols=88 Identities=28% Similarity=0.442 Sum_probs=76.5
Q ss_pred ccCCCcccccccCCccccCccCceeccccccCCCcEEccCCCcchHHhHHHHHhhhhHhcccCCCCCCCCccccccccCC
Q 021263 210 DFNASRPVMTLALPSSIKLEYDLTCAVCLDLVFNPYALSCGHLFCKLCACSAASVMVFEGLKSASPDSKCPICREIIHIS 289 (315)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~l~~~l~C~IC~~~~~~Pv~l~CgH~FC~~Ci~~~~~~~~~~~~~~~~~~~~CP~Cr~~v~~~ 289 (315)
+++++..|+....+....++..+.|+||.+.+.+|++++|||+||..||..++. ....||+|+..+...
T Consensus 5 di~D~tDw~~t~~~~l~~Le~~l~C~IC~d~~~~PvitpCgH~FCs~CI~~~l~-----------~~~~CP~Cr~~~~~~ 73 (397)
T TIGR00599 5 DITDSSDWLTTPIPSLYPLDTSLRCHICKDFFDVPVLTSCSHTFCSLCIRRCLS-----------NQPKCPLCRAEDQES 73 (397)
T ss_pred cCCCchhhccCCcccccccccccCCCcCchhhhCccCCCCCCchhHHHHHHHHh-----------CCCCCCCCCCccccc
Confidence 667777888887788888999999999999999999999999999999999864 235899999998876
Q ss_pred CC--cHHHHHHHHHHHHhccc
Q 021263 290 SI--GAGWQLGCKETWQEYMR 308 (315)
Q Consensus 290 ~~--n~~l~~lv~~~~~e~~~ 308 (315)
.+ |..|.++|+.|...+..
T Consensus 74 ~Lr~N~~L~~iVe~~~~~R~~ 94 (397)
T TIGR00599 74 KLRSNWLVSEIVESFKNLRPS 94 (397)
T ss_pred cCccchHHHHHHHHHHHhhHH
Confidence 65 99999999999876653
No 6
>COG5408 SPX domain-containing protein [Signal transduction mechanisms]
Probab=99.38 E-value=2.9e-12 Score=115.91 Aligned_cols=90 Identities=19% Similarity=0.191 Sum_probs=56.2
Q ss_pred CCchhhhhhhHhhhhhhhhccCCccchHHHHHHHhhcccCCCCC---CCcC----ccccccccccc-chhhhhhhhccch
Q 021263 1 MKFGETFTEYLHGDQERFLDKCSHVEYKRLKKVLKSCRTCKGLH---DSAC----KTEQQWDEGKD-ISESQLCQCQSSC 72 (315)
Q Consensus 1 MKFGk~l~~~~~~~~~~~~~~~~yi~Yk~LKk~ik~~~~~~~~~---~~~~----~~~~~~~~~~~-~~~~~~~~~~~~~ 72 (315)
||||+.|+.+.+||| +.+||+|+.|||+|+.+..++... ..+. ..+......++ ....-.....+..
T Consensus 1 MKF~~~L~~naVPEW-----ss~Y~dYk~lKKlI~~l~~~~~~~~~~~~~~~e~~~~~~~~~~~~dr~~~~l~~~~s~~~ 75 (296)
T COG5408 1 MKFGHSLQFNAVPEW-----SSKYIDYKQLKKLIYSLQKDQLSSYHGVSDNDETRDEAGEPSNWRDRFNHALKKELSPLQ 75 (296)
T ss_pred Ccchhhhhhccchhh-----HHhhhhHHHHHHHHHHHhcchhhhhccCCccccccccccCCCChhhhhcchhhhhhhhHH
Confidence 999999999999988 889999999999999998733110 0011 00000011011 0000011122233
Q ss_pred hhhhhHHHHH-HHHHHHHHHHHHH
Q 021263 73 QLCDHMFFSE-LMKEASDIAGCFS 95 (315)
Q Consensus 73 ~~~~~~Ff~~-L~~El~kv~~f~~ 95 (315)
+...+.||.. +..|+.|++.||.
T Consensus 76 ~~~v~~f~e~~i~~e~~k~~e~~~ 99 (296)
T COG5408 76 ANYVAKFFENYISEEAIKLDEFYS 99 (296)
T ss_pred HHHHHHHHHHhhhHHHHHHHhhhc
Confidence 4456788888 9999999999864
No 7
>PF15227 zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB: 2EGP_A 2ECV_A 2ECJ_A 2YSL_A 2YSJ_A.
Probab=99.37 E-value=3.9e-13 Score=87.55 Aligned_cols=42 Identities=38% Similarity=0.971 Sum_probs=30.8
Q ss_pred eccccccCCCcEEccCCCcchHHhHHHHHhhhhHhcccCCCCCCCCccc
Q 021263 234 CAVCLDLVFNPYALSCGHLFCKLCACSAASVMVFEGLKSASPDSKCPIC 282 (315)
Q Consensus 234 C~IC~~~~~~Pv~l~CgH~FC~~Ci~~~~~~~~~~~~~~~~~~~~CP~C 282 (315)
||||+++|.+|++++|||+||..||.++|+ ........||.|
T Consensus 1 CpiC~~~~~~Pv~l~CGH~FC~~Cl~~~~~-------~~~~~~~~CP~C 42 (42)
T PF15227_consen 1 CPICLDLFKDPVSLPCGHSFCRSCLERLWK-------EPSGSGFSCPEC 42 (42)
T ss_dssp ETTTTSB-SSEEE-SSSSEEEHHHHHHHHC-------CSSSST---SSS
T ss_pred CCccchhhCCccccCCcCHHHHHHHHHHHH-------ccCCcCCCCcCC
Confidence 899999999999999999999999999975 111223789988
No 8
>smart00504 Ubox Modified RING finger domain. Modified RING finger domain, without the full complement of Zn2+-binding ligands. Probable involvement in E2-dependent ubiquitination.
Probab=99.28 E-value=4.9e-12 Score=89.83 Aligned_cols=61 Identities=11% Similarity=0.254 Sum_probs=53.2
Q ss_pred CceeccccccCCCcEEccCCCcchHHhHHHHHhhhhHhcccCCCCCCCCccccccccCCCC--cHHHHHHHHHH
Q 021263 231 DLTCAVCLDLVFNPYALSCGHLFCKLCACSAASVMVFEGLKSASPDSKCPICREIIHISSI--GAGWQLGCKET 302 (315)
Q Consensus 231 ~l~C~IC~~~~~~Pv~l~CgH~FC~~Ci~~~~~~~~~~~~~~~~~~~~CP~Cr~~v~~~~~--n~~l~~lv~~~ 302 (315)
++.||||++.+.+|+.++|||+||..||.+|+. ....||.|+.++...++ |..+++.++.+
T Consensus 1 ~~~Cpi~~~~~~~Pv~~~~G~v~~~~~i~~~~~-----------~~~~cP~~~~~~~~~~l~~~~~l~~~i~~~ 63 (63)
T smart00504 1 EFLCPISLEVMKDPVILPSGQTYERRAIEKWLL-----------SHGTDPVTGQPLTHEDLIPNLALKSAIQEW 63 (63)
T ss_pred CcCCcCCCCcCCCCEECCCCCEEeHHHHHHHHH-----------HCCCCCCCcCCCChhhceeCHHHHHHHHhC
Confidence 368999999999999999999999999999975 25689999999977766 99999888753
No 9
>KOG0287 consensus Postreplication repair protein RAD18 [Replication, recombination and repair]
Probab=99.26 E-value=2.4e-12 Score=116.56 Aligned_cols=80 Identities=24% Similarity=0.397 Sum_probs=69.0
Q ss_pred cccccCCccccCccCceeccccccCCCcEEccCCCcchHHhHHHHHhhhhHhcccCCCCCCCCccccccccCCCC--cHH
Q 021263 217 VMTLALPSSIKLEYDLTCAVCLDLVFNPYALSCGHLFCKLCACSAASVMVFEGLKSASPDSKCPICREIIHISSI--GAG 294 (315)
Q Consensus 217 ~~~~~~~~~~~l~~~l~C~IC~~~~~~Pv~l~CgH~FC~~Ci~~~~~~~~~~~~~~~~~~~~CP~Cr~~v~~~~~--n~~ 294 (315)
+.+...+.+..+.+.++|-||.++|..|+++||||+||.-||..+++ ....||.|+.++....+ |..
T Consensus 9 w~~tsipslk~lD~lLRC~IC~eyf~ip~itpCsHtfCSlCIR~~L~-----------~~p~CP~C~~~~~Es~Lr~n~i 77 (442)
T KOG0287|consen 9 WPPTSIPSLKTLDDLLRCGICFEYFNIPMITPCSHTFCSLCIRKFLS-----------YKPQCPTCCVTVTESDLRNNRI 77 (442)
T ss_pred CCCccCchhhhhHHHHHHhHHHHHhcCceeccccchHHHHHHHHHhc-----------cCCCCCceecccchhhhhhhhH
Confidence 33344555667888999999999999999999999999999999865 77889999999999887 999
Q ss_pred HHHHHHHHHHhcc
Q 021263 295 WQLGCKETWQEYM 307 (315)
Q Consensus 295 l~~lv~~~~~e~~ 307 (315)
|.+||..|.-.|.
T Consensus 78 l~Eiv~S~~~~R~ 90 (442)
T KOG0287|consen 78 LDEIVKSLNFARN 90 (442)
T ss_pred HHHHHHHHHHHHH
Confidence 9999999877665
No 10
>PF04564 U-box: U-box domain; InterPro: IPR003613 Quality control of intracellular proteins is essential for cellular homeostasis. Molecular chaperones recognise and contribute to the refolding of misfolded or unfolded proteins, whereas the ubiquitin-proteasome system mediates the degradation of such abnormal proteins. Ubiquitin-protein ligases (E3s) determine the substrate specificity for ubiquitylation and have been classified into HECT and RING-finger families. More recently, however, U-box proteins, which contain a domain (the U box) of about 70 amino acids that is conserved from yeast to humans, have been identified as a new type of E3 []. Members of the U-box family of proteins constitute a class of ubiquitin-protein ligases (E3s) distinct from the HECT-type and RING finger-containing E3 families []. Using yeast two-hybrid technology, all mammalian U-box proteins have been reported to interact with molecular chaperones or co-chaperones, including Hsp90, Hsp70, DnaJc7, EKN1, CRN, and VCP. This suggests that the function of U box-type E3s is to mediate the degradation of unfolded or misfolded proteins in conjunction with molecular chaperones as receptors that recognise such abnormal proteins [, ]. Unlike the RING finger domain, IPR001841 from INTERPRO, that is stabilised by Zn2+ ions coordinated by the cysteines and a histidine, the U-box scaffold is probably stabilised by a system of salt-bridges and hydrogen bonds. The charged and polar residues that participate in this network of bonds are more strongly conserved in the U-box proteins than in classic RING fingers, which supports their role in maintaining the stability of the U box. Thus, the U box appears to have evolved from a RING finger domain by appropriation of a new set of residues required to stabilise its structure, concomitant with the loss of the original, metal-chelating residues [].; GO: 0004842 ubiquitin-protein ligase activity, 0016567 protein ubiquitination, 0000151 ubiquitin ligase complex; PDB: 1T1H_A 2C2L_D 2C2V_V 1WGM_A 2KR4_A 3L1Z_B 3L1X_A 2KRE_A 3M63_A 2QIZ_A ....
Probab=99.26 E-value=8.3e-12 Score=91.50 Aligned_cols=68 Identities=16% Similarity=0.234 Sum_probs=55.9
Q ss_pred cCceeccccccCCCcEEccCCCcchHHhHHHHHhhhhHhcccCCCCCCCCccccccccCCCC--cHHHHHHHHHHHHhcc
Q 021263 230 YDLTCAVCLDLVFNPYALSCGHLFCKLCACSAASVMVFEGLKSASPDSKCPICREIIHISSI--GAGWQLGCKETWQEYM 307 (315)
Q Consensus 230 ~~l~C~IC~~~~~~Pv~l~CgH~FC~~Ci~~~~~~~~~~~~~~~~~~~~CP~Cr~~v~~~~~--n~~l~~lv~~~~~e~~ 307 (315)
+.+.|||+.+++.+||.++|||+|+..||..|+. .....||.|+.++....+ |..|++.|+.|..+..
T Consensus 3 ~~f~CpIt~~lM~dPVi~~~G~tyer~~I~~~l~----------~~~~~~P~t~~~l~~~~l~pn~~Lk~~I~~~~~~~~ 72 (73)
T PF04564_consen 3 DEFLCPITGELMRDPVILPSGHTYERSAIERWLE----------QNGGTDPFTRQPLSESDLIPNRALKSAIEEWCAENK 72 (73)
T ss_dssp GGGB-TTTSSB-SSEEEETTSEEEEHHHHHHHHC----------TTSSB-TTT-SB-SGGGSEE-HHHHHHHHHHHHHCT
T ss_pred cccCCcCcCcHhhCceeCCcCCEEcHHHHHHHHH----------cCCCCCCCCCCcCCcccceECHHHHHHHHHHHHHcc
Confidence 5799999999999999999999999999999975 357899999999998877 9999999999988643
No 11
>PLN03208 E3 ubiquitin-protein ligase RMA2; Provisional
Probab=99.17 E-value=2.3e-11 Score=103.90 Aligned_cols=63 Identities=29% Similarity=0.629 Sum_probs=47.9
Q ss_pred ccCceeccccccCCCcEEccCCCcchHHhHHHHHhhhhHhc-----ccCCCCCCCCccccccccCCCC
Q 021263 229 EYDLTCAVCLDLVFNPYALSCGHLFCKLCACSAASVMVFEG-----LKSASPDSKCPICREIIHISSI 291 (315)
Q Consensus 229 ~~~l~C~IC~~~~~~Pv~l~CgH~FC~~Ci~~~~~~~~~~~-----~~~~~~~~~CP~Cr~~v~~~~~ 291 (315)
...+.|+||++.+.+|+.++|||.||+.||..|+...+... .........||+||..+....+
T Consensus 16 ~~~~~CpICld~~~dPVvT~CGH~FC~~CI~~wl~~s~~s~~~~~~~~~~k~~~~CPvCR~~Is~~~L 83 (193)
T PLN03208 16 GGDFDCNICLDQVRDPVVTLCGHLFCWPCIHKWTYASNNSRQRVDQYDHKREPPKCPVCKSDVSEATL 83 (193)
T ss_pred CCccCCccCCCcCCCcEEcCCCchhHHHHHHHHHHhccccccccccccccCCCCcCCCCCCcCChhcE
Confidence 35789999999999999999999999999999864211100 0112346799999999877654
No 12
>PF14835 zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM7_B.
Probab=99.07 E-value=4.9e-11 Score=83.12 Aligned_cols=59 Identities=32% Similarity=0.742 Sum_probs=33.7
Q ss_pred CccCceeccccccCCCcEEc-cCCCcchHHhHHHHHhhhhHhcccCCCCCCCCccccccccCCCC--cHHHHHHH
Q 021263 228 LEYDLTCAVCLDLVFNPYAL-SCGHLFCKLCACSAASVMVFEGLKSASPDSKCPICREIIHISSI--GAGWQLGC 299 (315)
Q Consensus 228 l~~~l~C~IC~~~~~~Pv~l-~CgH~FC~~Ci~~~~~~~~~~~~~~~~~~~~CP~Cr~~v~~~~~--n~~l~~lv 299 (315)
++..+.|++|.+++.+||.+ .|.|.||+.||...+ ...||+|+.+....++ |+.|.+++
T Consensus 4 le~lLrCs~C~~~l~~pv~l~~CeH~fCs~Ci~~~~-------------~~~CPvC~~Paw~qD~~~NrqLd~~i 65 (65)
T PF14835_consen 4 LEELLRCSICFDILKEPVCLGGCEHIFCSSCIRDCI-------------GSECPVCHTPAWIQDIQINRQLDSMI 65 (65)
T ss_dssp HHHTTS-SSS-S--SS-B---SSS--B-TTTGGGGT-------------TTB-SSS--B-S-SS----HHHHHHH
T ss_pred HHHhcCCcHHHHHhcCCceeccCccHHHHHHhHHhc-------------CCCCCCcCChHHHHHHHhhhhhhccC
Confidence 45679999999999999975 799999999996542 2459999999766654 99998875
No 13
>KOG0317 consensus Predicted E3 ubiquitin ligase, integral peroxisomal membrane protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.04 E-value=1.4e-10 Score=103.77 Aligned_cols=53 Identities=38% Similarity=0.791 Sum_probs=46.5
Q ss_pred ccCceeccccccCCCcEEccCCCcchHHhHHHHHhhhhHhcccCCCCCCCCccccccccCCCCc
Q 021263 229 EYDLTCAVCLDLVFNPYALSCGHLFCKLCACSAASVMVFEGLKSASPDSKCPICREIIHISSIG 292 (315)
Q Consensus 229 ~~~l~C~IC~~~~~~Pv~l~CgH~FC~~Ci~~~~~~~~~~~~~~~~~~~~CP~Cr~~v~~~~~n 292 (315)
+....|.+|++...+|..+||||.||+.||..|.. ....||.||..+++.+++
T Consensus 237 ~a~~kC~LCLe~~~~pSaTpCGHiFCWsCI~~w~~-----------ek~eCPlCR~~~~pskvi 289 (293)
T KOG0317|consen 237 EATRKCSLCLENRSNPSATPCGHIFCWSCILEWCS-----------EKAECPLCREKFQPSKVI 289 (293)
T ss_pred CCCCceEEEecCCCCCCcCcCcchHHHHHHHHHHc-----------cccCCCcccccCCCccee
Confidence 35689999999999999999999999999999964 455699999999988763
No 14
>KOG0823 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.02 E-value=1.4e-10 Score=100.83 Aligned_cols=54 Identities=31% Similarity=0.792 Sum_probs=46.9
Q ss_pred cCceeccccccCCCcEEccCCCcchHHhHHHHHhhhhHhcccCCCCCCCCccccccccCCCC
Q 021263 230 YDLTCAVCLDLVFNPYALSCGHLFCKLCACSAASVMVFEGLKSASPDSKCPICREIIHISSI 291 (315)
Q Consensus 230 ~~l~C~IC~~~~~~Pv~l~CgH~FC~~Ci~~~~~~~~~~~~~~~~~~~~CP~Cr~~v~~~~~ 291 (315)
..+.|.||++...|||.+.|||.||+.||.+|+. .......||+|+..|..+++
T Consensus 46 ~~FdCNICLd~akdPVvTlCGHLFCWpClyqWl~--------~~~~~~~cPVCK~~Vs~~~v 99 (230)
T KOG0823|consen 46 GFFDCNICLDLAKDPVVTLCGHLFCWPCLYQWLQ--------TRPNSKECPVCKAEVSIDTV 99 (230)
T ss_pred CceeeeeeccccCCCEEeecccceehHHHHHHHh--------hcCCCeeCCccccccccceE
Confidence 5799999999999999999999999999999965 23466789999999887754
No 15
>COG5432 RAD18 RING-finger-containing E3 ubiquitin ligase [Signal transduction mechanisms]
Probab=99.01 E-value=1.9e-10 Score=102.37 Aligned_cols=79 Identities=27% Similarity=0.462 Sum_probs=63.4
Q ss_pred cccccCCccccCccCceeccccccCCCcEEccCCCcchHHhHHHHHhhhhHhcccCCCCCCCCccccccccCCCC--cHH
Q 021263 217 VMTLALPSSIKLEYDLTCAVCLDLVFNPYALSCGHLFCKLCACSAASVMVFEGLKSASPDSKCPICREIIHISSI--GAG 294 (315)
Q Consensus 217 ~~~~~~~~~~~l~~~l~C~IC~~~~~~Pv~l~CgH~FC~~Ci~~~~~~~~~~~~~~~~~~~~CP~Cr~~v~~~~~--n~~ 294 (315)
+.....+....+...+.|-||...+..|+.++|||+||.-||.+++. ...-||+||.+.....+ +..
T Consensus 11 ~~~T~IPSL~~LDs~lrC~IC~~~i~ip~~TtCgHtFCslCIR~hL~-----------~qp~CP~Cr~~~~esrlr~~s~ 79 (391)
T COG5432 11 WNQTKIPSLKGLDSMLRCRICDCRISIPCETTCGHTFCSLCIRRHLG-----------TQPFCPVCREDPCESRLRGSSG 79 (391)
T ss_pred cccccCcchhcchhHHHhhhhhheeecceecccccchhHHHHHHHhc-----------CCCCCccccccHHhhhcccchh
Confidence 33344455666778899999999999999999999999999999864 77889999999776654 777
Q ss_pred HHHHHHHHHHhc
Q 021263 295 WQLGCKETWQEY 306 (315)
Q Consensus 295 l~~lv~~~~~e~ 306 (315)
+..+++.|...+
T Consensus 80 ~~ei~es~~~~r 91 (391)
T COG5432 80 SREINESHARNR 91 (391)
T ss_pred HHHHHHhhhhcc
Confidence 777777776544
No 16
>PF13923 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); PDB: 3HCU_A 2ECI_A 2JMD_A 3HCS_B 3HCT_A 3ZTG_A 2YUR_A 3L11_A.
Probab=99.00 E-value=2.6e-10 Score=73.11 Aligned_cols=38 Identities=42% Similarity=1.079 Sum_probs=31.8
Q ss_pred eccccccCCCc-EEccCCCcchHHhHHHHHhhhhHhcccCCCCCCCCccc
Q 021263 234 CAVCLDLVFNP-YALSCGHLFCKLCACSAASVMVFEGLKSASPDSKCPIC 282 (315)
Q Consensus 234 C~IC~~~~~~P-v~l~CgH~FC~~Ci~~~~~~~~~~~~~~~~~~~~CP~C 282 (315)
|+||++.+.+| +.++|||+||..|+.+++. ...+||+|
T Consensus 1 C~iC~~~~~~~~~~~~CGH~fC~~C~~~~~~-----------~~~~CP~C 39 (39)
T PF13923_consen 1 CPICLDELRDPVVVTPCGHSFCKECIEKYLE-----------KNPKCPVC 39 (39)
T ss_dssp ETTTTSB-SSEEEECTTSEEEEHHHHHHHHH-----------CTSB-TTT
T ss_pred CCCCCCcccCcCEECCCCCchhHHHHHHHHH-----------CcCCCcCC
Confidence 89999999999 5689999999999999875 25789987
No 17
>PF13920 zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); PDB: 2YHN_B 2YHO_G 3T6P_A 2CSY_A 2VJE_B 2VJF_B 2HDP_B 2EA5_A 2ECG_A 3EB5_A ....
Probab=98.94 E-value=6.1e-10 Score=75.39 Aligned_cols=46 Identities=41% Similarity=0.916 Sum_probs=39.8
Q ss_pred CceeccccccCCCcEEccCCCc-chHHhHHHHHhhhhHhcccCCCCCCCCcccccccc
Q 021263 231 DLTCAVCLDLVFNPYALSCGHL-FCKLCACSAASVMVFEGLKSASPDSKCPICREIIH 287 (315)
Q Consensus 231 ~l~C~IC~~~~~~Pv~l~CgH~-FC~~Ci~~~~~~~~~~~~~~~~~~~~CP~Cr~~v~ 287 (315)
+..|+||++...+++.+||||. ||..|+.+++. ....||+||+++.
T Consensus 2 ~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~-----------~~~~CP~Cr~~i~ 48 (50)
T PF13920_consen 2 DEECPICFENPRDVVLLPCGHLCFCEECAERLLK-----------RKKKCPICRQPIE 48 (50)
T ss_dssp HSB-TTTSSSBSSEEEETTCEEEEEHHHHHHHHH-----------TTSBBTTTTBB-S
T ss_pred cCCCccCCccCCceEEeCCCChHHHHHHhHHhcc-----------cCCCCCcCChhhc
Confidence 5789999999999999999999 99999999864 6789999999875
No 18
>PHA02929 N1R/p28-like protein; Provisional
Probab=98.87 E-value=9.1e-10 Score=97.90 Aligned_cols=49 Identities=29% Similarity=0.737 Sum_probs=39.6
Q ss_pred ccCceeccccccCCCc--------EEccCCCcchHHhHHHHHhhhhHhcccCCCCCCCCccccccccC
Q 021263 229 EYDLTCAVCLDLVFNP--------YALSCGHLFCKLCACSAASVMVFEGLKSASPDSKCPICREIIHI 288 (315)
Q Consensus 229 ~~~l~C~IC~~~~~~P--------v~l~CgH~FC~~Ci~~~~~~~~~~~~~~~~~~~~CP~Cr~~v~~ 288 (315)
..+..|+||++.+.++ +.++|||.||..||.+|.. ....||+||.++..
T Consensus 172 ~~~~eC~ICle~~~~~~~~~~~~~vl~~C~H~FC~~CI~~Wl~-----------~~~tCPlCR~~~~~ 228 (238)
T PHA02929 172 SKDKECAICMEKVYDKEIKNMYFGILSNCNHVFCIECIDIWKK-----------EKNTCPVCRTPFIS 228 (238)
T ss_pred CCCCCCccCCcccccCccccccceecCCCCCcccHHHHHHHHh-----------cCCCCCCCCCEeeE
Confidence 3568999999987653 4468999999999999864 45689999998653
No 19
>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A ....
Probab=98.85 E-value=9.3e-10 Score=72.44 Aligned_cols=40 Identities=33% Similarity=0.871 Sum_probs=32.5
Q ss_pred eeccccccCC---CcEEccCCCcchHHhHHHHHhhhhHhcccCCCCCCCCcccc
Q 021263 233 TCAVCLDLVF---NPYALSCGHLFCKLCACSAASVMVFEGLKSASPDSKCPICR 283 (315)
Q Consensus 233 ~C~IC~~~~~---~Pv~l~CgH~FC~~Ci~~~~~~~~~~~~~~~~~~~~CP~Cr 283 (315)
.|+||++.+. .++.++|||.||..||.+|+. ...+||+||
T Consensus 2 ~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~~~~-----------~~~~CP~CR 44 (44)
T PF13639_consen 2 ECPICLEEFEDGEKVVKLPCGHVFHRSCIKEWLK-----------RNNSCPVCR 44 (44)
T ss_dssp CETTTTCBHHTTSCEEEETTSEEEEHHHHHHHHH-----------HSSB-TTTH
T ss_pred CCcCCChhhcCCCeEEEccCCCeeCHHHHHHHHH-----------hCCcCCccC
Confidence 6999999874 445689999999999999975 245999997
No 20
>KOG0320 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.83 E-value=1.6e-09 Score=90.43 Aligned_cols=50 Identities=38% Similarity=0.856 Sum_probs=41.7
Q ss_pred cCceeccccccCCC--cEEccCCCcchHHhHHHHHhhhhHhcccCCCCCCCCccccccccCCC
Q 021263 230 YDLTCAVCLDLVFN--PYALSCGHLFCKLCACSAASVMVFEGLKSASPDSKCPICREIIHISS 290 (315)
Q Consensus 230 ~~l~C~IC~~~~~~--Pv~l~CgH~FC~~Ci~~~~~~~~~~~~~~~~~~~~CP~Cr~~v~~~~ 290 (315)
..+.||||++-+.. |+.+.|||.||..||....+ ....||+|+..+..+.
T Consensus 130 ~~~~CPiCl~~~sek~~vsTkCGHvFC~~Cik~alk-----------~~~~CP~C~kkIt~k~ 181 (187)
T KOG0320|consen 130 GTYKCPICLDSVSEKVPVSTKCGHVFCSQCIKDALK-----------NTNKCPTCRKKITHKQ 181 (187)
T ss_pred cccCCCceecchhhccccccccchhHHHHHHHHHHH-----------hCCCCCCcccccchhh
Confidence 45999999998775 45689999999999999865 7789999998776553
No 21
>PF00097 zf-C3HC4: Zinc finger, C3HC4 type (RING finger); InterPro: IPR018957 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C3HC4 type zinc-finger (RING finger) is a cysteine-rich domain of 40 to 60 residues that coordinates two zinc ions, and has the consensus sequence: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C where X is any amino acid []. Many proteins containing a RING finger play a key role in the ubiquitination pathway []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1CHC_A 2ECW_A 2Y43_B 1V87_A 2DJB_A 2H0D_B 3RPG_C 3KNV_A 2CKL_B 1JM7_A ....
Probab=98.82 E-value=2.4e-09 Score=69.23 Aligned_cols=40 Identities=40% Similarity=0.967 Sum_probs=35.3
Q ss_pred eccccccCCCcE-EccCCCcchHHhHHHHHhhhhHhcccCCCCCCCCccc
Q 021263 234 CAVCLDLVFNPY-ALSCGHLFCKLCACSAASVMVFEGLKSASPDSKCPIC 282 (315)
Q Consensus 234 C~IC~~~~~~Pv-~l~CgH~FC~~Ci~~~~~~~~~~~~~~~~~~~~CP~C 282 (315)
|+||.+.+.+|+ .++|||+||..|+.+++.. .....||.|
T Consensus 1 C~iC~~~~~~~~~~~~C~H~fC~~C~~~~~~~---------~~~~~CP~C 41 (41)
T PF00097_consen 1 CPICLEPFEDPVILLPCGHSFCRDCLRKWLEN---------SGSVKCPLC 41 (41)
T ss_dssp ETTTSSBCSSEEEETTTSEEEEHHHHHHHHHH---------TSSSBTTTT
T ss_pred CCcCCccccCCCEEecCCCcchHHHHHHHHHh---------cCCccCCcC
Confidence 899999999999 7899999999999999751 466779987
No 22
>PF13445 zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A.
Probab=98.78 E-value=2.9e-09 Score=69.42 Aligned_cols=39 Identities=38% Similarity=0.910 Sum_probs=22.7
Q ss_pred eccccccCCC----cEEccCCCcchHHhHHHHHhhhhHhcccCCCCCCCCc
Q 021263 234 CAVCLDLVFN----PYALSCGHLFCKLCACSAASVMVFEGLKSASPDSKCP 280 (315)
Q Consensus 234 C~IC~~~~~~----Pv~l~CgH~FC~~Ci~~~~~~~~~~~~~~~~~~~~CP 280 (315)
||||.+ +.+ |+.|+|||+||.+|+.+.++. .....++||
T Consensus 1 CpIc~e-~~~~~n~P~~L~CGH~~c~~cl~~l~~~-------~~~~~~kCP 43 (43)
T PF13445_consen 1 CPICKE-FSTEENPPMVLPCGHVFCKDCLQKLSKK-------SDRNRFKCP 43 (43)
T ss_dssp -TTT-----TTSS-EEE-SSS-EEEHHHHHHHHHH--------S-S-B--T
T ss_pred CCcccc-ccCCCCCCEEEeCccHHHHHHHHHHHhc-------CCCCeeeCc
Confidence 899999 888 999999999999999998651 113567787
No 23
>KOG2164 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.69 E-value=8.7e-09 Score=98.82 Aligned_cols=55 Identities=31% Similarity=0.786 Sum_probs=47.2
Q ss_pred CceeccccccCCCcEEccCCCcchHHhHHHHHhhhhHhcccCCCCCCCCccccccccCCCC
Q 021263 231 DLTCAVCLDLVFNPYALSCGHLFCKLCACSAASVMVFEGLKSASPDSKCPICREIIHISSI 291 (315)
Q Consensus 231 ~l~C~IC~~~~~~Pv~l~CgH~FC~~Ci~~~~~~~~~~~~~~~~~~~~CP~Cr~~v~~~~~ 291 (315)
+..||||++...-|+.+.|||.||..||-++|.. . ...+...||+|+..+..+++
T Consensus 186 ~~~CPICL~~~~~p~~t~CGHiFC~~CiLqy~~~---s---~~~~~~~CPiC~s~I~~kdl 240 (513)
T KOG2164|consen 186 DMQCPICLEPPSVPVRTNCGHIFCGPCILQYWNY---S---AIKGPCSCPICRSTITLKDL 240 (513)
T ss_pred CCcCCcccCCCCcccccccCceeeHHHHHHHHhh---h---cccCCccCCchhhhccccce
Confidence 7899999999999999999999999999999862 1 23467899999999988755
No 24
>cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)
Probab=98.68 E-value=1.6e-08 Score=65.92 Aligned_cols=44 Identities=39% Similarity=0.953 Sum_probs=36.5
Q ss_pred eeccccccCCCcEEcc-CCCcchHHhHHHHHhhhhHhcccCCCCCCCCccccccc
Q 021263 233 TCAVCLDLVFNPYALS-CGHLFCKLCACSAASVMVFEGLKSASPDSKCPICREII 286 (315)
Q Consensus 233 ~C~IC~~~~~~Pv~l~-CgH~FC~~Ci~~~~~~~~~~~~~~~~~~~~CP~Cr~~v 286 (315)
.|+||.+.+.+++.++ |||.||..|+..|+. .....||.|+..+
T Consensus 1 ~C~iC~~~~~~~~~~~~C~H~~c~~C~~~~~~----------~~~~~Cp~C~~~~ 45 (45)
T cd00162 1 ECPICLEEFREPVVLLPCGHVFCRSCIDKWLK----------SGKNTCPLCRTPI 45 (45)
T ss_pred CCCcCchhhhCceEecCCCChhcHHHHHHHHH----------hCcCCCCCCCCcC
Confidence 4999999998887765 999999999999865 2467899998753
No 25
>KOG2177 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.67 E-value=1.4e-08 Score=92.96 Aligned_cols=73 Identities=26% Similarity=0.498 Sum_probs=57.9
Q ss_pred ccCccCceeccccccCCCcEEccCCCcchHHhHHHHHhhhhHhcccCCCCCCCCccccccccCCCCcHHHHHHHHHHHHh
Q 021263 226 IKLEYDLTCAVCLDLVFNPYALSCGHLFCKLCACSAASVMVFEGLKSASPDSKCPICREIIHISSIGAGWQLGCKETWQE 305 (315)
Q Consensus 226 ~~l~~~l~C~IC~~~~~~Pv~l~CgH~FC~~Ci~~~~~~~~~~~~~~~~~~~~CP~Cr~~v~~~~~n~~l~~lv~~~~~e 305 (315)
..+.+.+.||||++.|.+|++++|||+||..|+..++. ....||.||........|..+.++++.+...
T Consensus 8 ~~~~~~~~C~iC~~~~~~p~~l~C~H~~c~~C~~~~~~-----------~~~~Cp~cr~~~~~~~~n~~l~~~~~~~~~~ 76 (386)
T KOG2177|consen 8 EVLQEELTCPICLEYFREPVLLPCGHNFCRACLTRSWE-----------GPLSCPVCRPPSRNLRPNVLLANLVERLRQL 76 (386)
T ss_pred hhccccccChhhHHHhhcCccccccchHhHHHHHHhcC-----------CCcCCcccCCchhccCccHHHHHHHHHHHhc
Confidence 34567899999999999998899999999999988743 4589999996222112399999999999876
Q ss_pred cccc
Q 021263 306 YMRK 309 (315)
Q Consensus 306 ~~~~ 309 (315)
....
T Consensus 77 ~~~~ 80 (386)
T KOG2177|consen 77 RLSR 80 (386)
T ss_pred CCcc
Confidence 5543
No 26
>PHA02926 zinc finger-like protein; Provisional
Probab=98.67 E-value=1.5e-08 Score=87.68 Aligned_cols=55 Identities=25% Similarity=0.680 Sum_probs=40.1
Q ss_pred ccCceeccccccCCC---------cEEccCCCcchHHhHHHHHhhhhHhcccCCCCCCCCccccccccC
Q 021263 229 EYDLTCAVCLDLVFN---------PYALSCGHLFCKLCACSAASVMVFEGLKSASPDSKCPICREIIHI 288 (315)
Q Consensus 229 ~~~l~C~IC~~~~~~---------Pv~l~CgH~FC~~Ci~~~~~~~~~~~~~~~~~~~~CP~Cr~~v~~ 288 (315)
..+..|+||++...+ ++..+|+|+||..||..|.+. ....+....||+||..+..
T Consensus 168 SkE~eCgICmE~I~eK~~~~eRrFGIL~~CnHsFCl~CIr~Wr~~-----r~~~~~~rsCPiCR~~f~~ 231 (242)
T PHA02926 168 SKEKECGICYEVVYSKRLENDRYFGLLDSCNHIFCITCINIWHRT-----RRETGASDNCPICRTRFRN 231 (242)
T ss_pred cCCCCCccCccccccccccccccccccCCCCchHHHHHHHHHHHh-----ccccCcCCcCCCCcceeee
Confidence 357899999998643 244589999999999999641 0112345789999998553
No 27
>COG5574 PEX10 RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.63 E-value=1.5e-08 Score=89.65 Aligned_cols=54 Identities=30% Similarity=0.635 Sum_probs=45.0
Q ss_pred ccCceeccccccCCCcEEccCCCcchHHhHHHHHhhhhHhcccCCCCCCCCccccccccCCCC
Q 021263 229 EYDLTCAVCLDLVFNPYALSCGHLFCKLCACSAASVMVFEGLKSASPDSKCPICREIIHISSI 291 (315)
Q Consensus 229 ~~~l~C~IC~~~~~~Pv~l~CgH~FC~~Ci~~~~~~~~~~~~~~~~~~~~CP~Cr~~v~~~~~ 291 (315)
..++.|+||++....|..++|||.||+.||-..|- ......||.||+.+.++++
T Consensus 213 ~~d~kC~lC~e~~~~ps~t~CgHlFC~~Cl~~~~t---------~~k~~~CplCRak~~pk~v 266 (271)
T COG5574 213 LADYKCFLCLEEPEVPSCTPCGHLFCLSCLLISWT---------KKKYEFCPLCRAKVYPKKV 266 (271)
T ss_pred ccccceeeeecccCCcccccccchhhHHHHHHHHH---------hhccccCchhhhhccchhh
Confidence 35899999999999999999999999999977321 1345569999999988765
No 28
>PF14634 zf-RING_5: zinc-RING finger domain
Probab=98.56 E-value=4.4e-08 Score=64.41 Aligned_cols=41 Identities=39% Similarity=1.000 Sum_probs=33.3
Q ss_pred eeccccccC---CCcEEccCCCcchHHhHHHHHhhhhHhcccCCCCCCCCccccc
Q 021263 233 TCAVCLDLV---FNPYALSCGHLFCKLCACSAASVMVFEGLKSASPDSKCPICRE 284 (315)
Q Consensus 233 ~C~IC~~~~---~~Pv~l~CgH~FC~~Ci~~~~~~~~~~~~~~~~~~~~CP~Cr~ 284 (315)
.|+||.+.+ ..|+.++|||+||..|+.... .....||+||+
T Consensus 1 ~C~~C~~~~~~~~~~~l~~CgH~~C~~C~~~~~-----------~~~~~CP~C~k 44 (44)
T PF14634_consen 1 HCNICFEKYSEERRPRLTSCGHIFCEKCLKKLK-----------GKSVKCPICRK 44 (44)
T ss_pred CCcCcCccccCCCCeEEcccCCHHHHHHHHhhc-----------CCCCCCcCCCC
Confidence 489999988 356778999999999997752 35789999984
No 29
>smart00184 RING Ring finger. E3 ubiquitin-protein ligase activity is intrinsic to the RING domain of c-Cbl and is likely to be a general function of this domain; Various RING fingers exhibit binding activity towards E2 ubiquitin-conjugating enzymes (Ubc' s)
Probab=98.53 E-value=7.7e-08 Score=60.40 Aligned_cols=39 Identities=41% Similarity=1.077 Sum_probs=33.7
Q ss_pred eccccccCCCcEEccCCCcchHHhHHHHHhhhhHhcccCCCCCCCCccc
Q 021263 234 CAVCLDLVFNPYALSCGHLFCKLCACSAASVMVFEGLKSASPDSKCPIC 282 (315)
Q Consensus 234 C~IC~~~~~~Pv~l~CgH~FC~~Ci~~~~~~~~~~~~~~~~~~~~CP~C 282 (315)
|+||++...+++.++|||.||..|+..|+. .....||.|
T Consensus 1 C~iC~~~~~~~~~~~C~H~~c~~C~~~~~~----------~~~~~CP~C 39 (39)
T smart00184 1 CPICLEELKDPVVLPCGHTFCRSCIRKWLK----------SGNNTCPIC 39 (39)
T ss_pred CCcCccCCCCcEEecCCChHHHHHHHHHHH----------hCcCCCCCC
Confidence 799999988999999999999999998854 245679987
No 30
>KOG0311 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.43 E-value=3.2e-08 Score=90.78 Aligned_cols=54 Identities=28% Similarity=0.667 Sum_probs=46.0
Q ss_pred ccCccCceeccccccCCCcEEcc-CCCcchHHhHHHHHhhhhHhcccCCCCCCCCccccccccCC
Q 021263 226 IKLEYDLTCAVCLDLVFNPYALS-CGHLFCKLCACSAASVMVFEGLKSASPDSKCPICREIIHIS 289 (315)
Q Consensus 226 ~~l~~~l~C~IC~~~~~~Pv~l~-CgH~FC~~Ci~~~~~~~~~~~~~~~~~~~~CP~Cr~~v~~~ 289 (315)
..+.-.+.||||++++...++++ |+|.||..||...++ .+...||.||+.+..+
T Consensus 38 ~~~~~~v~c~icl~llk~tmttkeClhrfc~~ci~~a~r----------~gn~ecptcRk~l~Sk 92 (381)
T KOG0311|consen 38 AMFDIQVICPICLSLLKKTMTTKECLHRFCFDCIWKALR----------SGNNECPTCRKKLVSK 92 (381)
T ss_pred HHhhhhhccHHHHHHHHhhcccHHHHHHHHHHHHHHHHH----------hcCCCCchHHhhcccc
Confidence 34567899999999999998875 999999999988865 5788999999985544
No 31
>TIGR00570 cdk7 CDK-activating kinase assembly factor MAT1. All proteins in this family for which functions are known are cyclin dependent protein kinases that are components of TFIIH, a complex that is involved in nucleotide excision repair and transcription initiation. Also known as MAT1 (menage a trois 1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.28 E-value=5.7e-07 Score=82.52 Aligned_cols=51 Identities=25% Similarity=0.565 Sum_probs=39.5
Q ss_pred cCceecccccc-CCCcEE---c-cCCCcchHHhHHHHHhhhhHhcccCCCCCCCCccccccccCCC
Q 021263 230 YDLTCAVCLDL-VFNPYA---L-SCGHLFCKLCACSAASVMVFEGLKSASPDSKCPICREIIHISS 290 (315)
Q Consensus 230 ~~l~C~IC~~~-~~~Pv~---l-~CgH~FC~~Ci~~~~~~~~~~~~~~~~~~~~CP~Cr~~v~~~~ 290 (315)
++..||+|... +.+|-. + +|||.||.+|+...|. .+...||.|+.++....
T Consensus 2 d~~~CP~Ck~~~y~np~~kl~i~~CGH~~C~sCv~~l~~----------~~~~~CP~C~~~lrk~~ 57 (309)
T TIGR00570 2 DDQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFV----------RGSGSCPECDTPLRKNN 57 (309)
T ss_pred CCCCCCcCCCCCccCcccccccCCCCCcccHHHHHHHhc----------CCCCCCCCCCCccchhh
Confidence 45789999984 556632 2 6999999999999864 35568999999877764
No 32
>KOG4159 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.27 E-value=6e-07 Score=85.62 Aligned_cols=69 Identities=20% Similarity=0.503 Sum_probs=55.8
Q ss_pred ccCceeccccccCCCcEEccCCCcchHHhHHHHHhhhhHhcccCCCCCCCCccccccccCCC-------CcHHHHHHHHH
Q 021263 229 EYDLTCAVCLDLVFNPYALSCGHLFCKLCACSAASVMVFEGLKSASPDSKCPICREIIHISS-------IGAGWQLGCKE 301 (315)
Q Consensus 229 ~~~l~C~IC~~~~~~Pv~l~CgH~FC~~Ci~~~~~~~~~~~~~~~~~~~~CP~Cr~~v~~~~-------~n~~l~~lv~~ 301 (315)
..++.|.||...+..|+.+||||+||..||.+.++ ....||.||.++.... +|+....++..
T Consensus 82 ~sef~c~vc~~~l~~pv~tpcghs~c~~Cl~r~ld-----------~~~~cp~Cr~~l~e~~~~~~~~~~~r~~~~li~~ 150 (398)
T KOG4159|consen 82 RSEFECCVCSRALYPPVVTPCGHSFCLECLDRSLD-----------QETECPLCRDELVELPALEQALSLNRLLCKLITK 150 (398)
T ss_pred cchhhhhhhHhhcCCCccccccccccHHHHHHHhc-----------cCCCCcccccccccchHHHHHHHHHHHHHHHHHH
Confidence 57899999999999999999999999999988643 6778999999977542 25566678887
Q ss_pred HHHhccc
Q 021263 302 TWQEYMR 308 (315)
Q Consensus 302 ~~~e~~~ 308 (315)
|+....+
T Consensus 151 F~~~~~~ 157 (398)
T KOG4159|consen 151 FLEGSSS 157 (398)
T ss_pred hhhhhhc
Confidence 7765443
No 33
>KOG2660 consensus Locus-specific chromosome binding proteins [Function unknown]
Probab=98.23 E-value=5.3e-07 Score=82.40 Aligned_cols=66 Identities=24% Similarity=0.498 Sum_probs=53.4
Q ss_pred ccCccCceeccccccCCCcEEc-cCCCcchHHhHHHHHhhhhHhcccCCCCCCCCccccccccCCCC------cHHHHHH
Q 021263 226 IKLEYDLTCAVCLDLVFNPYAL-SCGHLFCKLCACSAASVMVFEGLKSASPDSKCPICREIIHISSI------GAGWQLG 298 (315)
Q Consensus 226 ~~l~~~l~C~IC~~~~~~Pv~l-~CgH~FC~~Ci~~~~~~~~~~~~~~~~~~~~CP~Cr~~v~~~~~------n~~l~~l 298 (315)
..+....+|.+|..+|.|+.++ -|-|+||.+||.+++. ....||.|...++.... +..|+.+
T Consensus 10 ~~~n~~itC~LC~GYliDATTI~eCLHTFCkSCivk~l~-----------~~~~CP~C~i~ih~t~pl~ni~~Drtlqdi 78 (331)
T KOG2660|consen 10 TELNPHITCRLCGGYLIDATTITECLHTFCKSCIVKYLE-----------ESKYCPTCDIVIHKTHPLLNIRSDRTLQDI 78 (331)
T ss_pred hhcccceehhhccceeecchhHHHHHHHHHHHHHHHHHH-----------HhccCCccceeccCccccccCCcchHHHHH
Confidence 3456789999999999999886 5999999999999875 47889999999887742 5666666
Q ss_pred HHHH
Q 021263 299 CKET 302 (315)
Q Consensus 299 v~~~ 302 (315)
+-++
T Consensus 79 VyKL 82 (331)
T KOG2660|consen 79 VYKL 82 (331)
T ss_pred HHHH
Confidence 6554
No 34
>PF12678 zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This domain constitutes a conserved region found in proteins that participate in diverse functions relevant to chromosome metabolism and cell cycle control [].The domain contains 8 cysteine/ histidine residues which are proposed to be the conserved residues involved in zinc binding.; PDB: 4A0C_D 4A0L_I 4A0K_B 2ECL_A 1LDK_C 3RTR_F 3DQV_Y 1U6G_B 1LDJ_B 2HYE_D ....
Probab=98.17 E-value=1.5e-06 Score=63.54 Aligned_cols=40 Identities=33% Similarity=0.875 Sum_probs=31.3
Q ss_pred eeccccccCCCc------------EE-ccCCCcchHHhHHHHHhhhhHhcccCCCCCCCCcccc
Q 021263 233 TCAVCLDLVFNP------------YA-LSCGHLFCKLCACSAASVMVFEGLKSASPDSKCPICR 283 (315)
Q Consensus 233 ~C~IC~~~~~~P------------v~-l~CgH~FC~~Ci~~~~~~~~~~~~~~~~~~~~CP~Cr 283 (315)
.|+||++.+.+| +. .+|||.|+..||.+|+. ....||+||
T Consensus 21 ~C~IC~~~l~~~~~~~~~~~~~~~i~~~~C~H~FH~~Ci~~Wl~-----------~~~~CP~CR 73 (73)
T PF12678_consen 21 NCAICREPLEDPCPECQAPQDECPIVWGPCGHIFHFHCISQWLK-----------QNNTCPLCR 73 (73)
T ss_dssp BETTTTSBTTSTTCCHHHCTTTS-EEEETTSEEEEHHHHHHHHT-----------TSSB-TTSS
T ss_pred cccccChhhhChhhhhcCCccccceEecccCCCEEHHHHHHHHh-----------cCCcCCCCC
Confidence 499999988433 33 47999999999999975 455999997
No 35
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=98.17 E-value=4.6e-07 Score=91.05 Aligned_cols=55 Identities=25% Similarity=0.620 Sum_probs=47.1
Q ss_pred cCccCceeccccccCCCcEEccCCCcchHHhHHHHHhhhhHhcccCCCCCCCCccccccccCCCC
Q 021263 227 KLEYDLTCAVCLDLVFNPYALSCGHLFCKLCACSAASVMVFEGLKSASPDSKCPICREIIHISSI 291 (315)
Q Consensus 227 ~l~~~l~C~IC~~~~~~Pv~l~CgH~FC~~Ci~~~~~~~~~~~~~~~~~~~~CP~Cr~~v~~~~~ 291 (315)
.....++||+|..-+.+.+++.|||.||..|+.+.+. -...+||.|.+.+...++
T Consensus 639 ~yK~~LkCs~Cn~R~Kd~vI~kC~H~FC~~Cvq~r~e----------tRqRKCP~Cn~aFganDv 693 (698)
T KOG0978|consen 639 EYKELLKCSVCNTRWKDAVITKCGHVFCEECVQTRYE----------TRQRKCPKCNAAFGANDV 693 (698)
T ss_pred HHHhceeCCCccCchhhHHHHhcchHHHHHHHHHHHH----------HhcCCCCCCCCCCCcccc
Confidence 3456799999999999999999999999999998865 367899999999877654
No 36
>COG5243 HRD1 HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones]
Probab=98.04 E-value=3e-06 Score=78.41 Aligned_cols=48 Identities=31% Similarity=0.703 Sum_probs=40.1
Q ss_pred ccCceecccccc-CCCc------------EEccCCCcchHHhHHHHHhhhhHhcccCCCCCCCCcccccccc
Q 021263 229 EYDLTCAVCLDL-VFNP------------YALSCGHLFCKLCACSAASVMVFEGLKSASPDSKCPICREIIH 287 (315)
Q Consensus 229 ~~~l~C~IC~~~-~~~P------------v~l~CgH~FC~~Ci~~~~~~~~~~~~~~~~~~~~CP~Cr~~v~ 287 (315)
.++-.|.||++- +..| ..+||||.+...|+..|.. ....||+||.++.
T Consensus 285 n~D~~C~ICmde~~h~~~~~~~~~~~~~pKrLpCGHilHl~CLknW~E-----------RqQTCPICr~p~i 345 (491)
T COG5243 285 NSDRTCTICMDEMFHPDHEPLPRGLDMTPKRLPCGHILHLHCLKNWLE-----------RQQTCPICRRPVI 345 (491)
T ss_pred CCCCeEEEecccccCCCCccCcccccCCcccccccceeeHHHHHHHHH-----------hccCCCcccCccc
Confidence 467899999986 4433 6789999999999999975 6789999999943
No 37
>KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.96 E-value=3.4e-06 Score=84.60 Aligned_cols=49 Identities=33% Similarity=0.737 Sum_probs=42.5
Q ss_pred cCceeccccccCCC-----cEEccCCCcchHHhHHHHHhhhhHhcccCCCCCCCCccccccccCC
Q 021263 230 YDLTCAVCLDLVFN-----PYALSCGHLFCKLCACSAASVMVFEGLKSASPDSKCPICREIIHIS 289 (315)
Q Consensus 230 ~~l~C~IC~~~~~~-----Pv~l~CgH~FC~~Ci~~~~~~~~~~~~~~~~~~~~CP~Cr~~v~~~ 289 (315)
.+..|+||.+.+.. |..++|||.||..|+..|++ ....||+||..+...
T Consensus 290 ~~~~C~IC~e~l~~~~~~~~~rL~C~Hifh~~CL~~W~e-----------r~qtCP~CR~~~~~~ 343 (543)
T KOG0802|consen 290 SDELCIICLEELHSGHNITPKRLPCGHIFHDSCLRSWFE-----------RQQTCPTCRTVLYDY 343 (543)
T ss_pred cCCeeeeechhhccccccccceeecccchHHHHHHHHHH-----------HhCcCCcchhhhhcc
Confidence 47899999999998 78899999999999999986 577899999954443
No 38
>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.94 E-value=6.6e-06 Score=76.78 Aligned_cols=48 Identities=29% Similarity=0.575 Sum_probs=38.7
Q ss_pred ceeccccccCCCc---EEccCCCcchHHhHHHHHhhhhHhcccCCCCCCCCccccccccCC
Q 021263 232 LTCAVCLDLVFNP---YALSCGHLFCKLCACSAASVMVFEGLKSASPDSKCPICREIIHIS 289 (315)
Q Consensus 232 l~C~IC~~~~~~P---v~l~CgH~FC~~Ci~~~~~~~~~~~~~~~~~~~~CP~Cr~~v~~~ 289 (315)
.+|.||++.+..- +.|||.|.|...||..|+- .....||+|+..+...
T Consensus 230 ~~CaIClEdY~~GdklRiLPC~H~FH~~CIDpWL~----------~~r~~CPvCK~di~~~ 280 (348)
T KOG4628|consen 230 DTCAICLEDYEKGDKLRILPCSHKFHVNCIDPWLT----------QTRTFCPVCKRDIRTD 280 (348)
T ss_pred ceEEEeecccccCCeeeEecCCCchhhccchhhHh----------hcCccCCCCCCcCCCC
Confidence 5999999988854 4489999999999999974 2445699999875543
No 39
>COG5540 RING-finger-containing ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.92 E-value=6.8e-06 Score=74.24 Aligned_cols=49 Identities=29% Similarity=0.602 Sum_probs=40.0
Q ss_pred cCceeccccccCCC--c-EEccCCCcchHHhHHHHHhhhhHhcccCCCCCCCCccccccccC
Q 021263 230 YDLTCAVCLDLVFN--P-YALSCGHLFCKLCACSAASVMVFEGLKSASPDSKCPICREIIHI 288 (315)
Q Consensus 230 ~~l~C~IC~~~~~~--P-v~l~CgH~FC~~Ci~~~~~~~~~~~~~~~~~~~~CP~Cr~~v~~ 288 (315)
-...|.||++.|.. - +.+||.|.|...|+.+|.- +....||+||.++++
T Consensus 322 ~GveCaICms~fiK~d~~~vlPC~H~FH~~Cv~kW~~----------~y~~~CPvCrt~iPP 373 (374)
T COG5540 322 KGVECAICMSNFIKNDRLRVLPCDHRFHVGCVDKWLL----------GYSNKCPVCRTAIPP 373 (374)
T ss_pred CCceEEEEhhhhcccceEEEeccCceechhHHHHHHh----------hhcccCCccCCCCCC
Confidence 34889999997652 2 4489999999999999963 467899999999875
No 40
>COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only]
Probab=97.86 E-value=7.9e-06 Score=69.50 Aligned_cols=48 Identities=27% Similarity=0.659 Sum_probs=40.9
Q ss_pred CceeccccccCCCcEEccCCCcchHHhHHHHHhhhhHhcccCCCCCCCCccccccccCC
Q 021263 231 DLTCAVCLDLVFNPYALSCGHLFCKLCACSAASVMVFEGLKSASPDSKCPICREIIHIS 289 (315)
Q Consensus 231 ~l~C~IC~~~~~~Pv~l~CgH~FC~~Ci~~~~~~~~~~~~~~~~~~~~CP~Cr~~v~~~ 289 (315)
.+.|.||...+..||.+.|||.||..|..+-++ ....|-+|.+...-.
T Consensus 196 PF~C~iCKkdy~spvvt~CGH~FC~~Cai~~y~-----------kg~~C~~Cgk~t~G~ 243 (259)
T COG5152 196 PFLCGICKKDYESPVVTECGHSFCSLCAIRKYQ-----------KGDECGVCGKATYGR 243 (259)
T ss_pred ceeehhchhhccchhhhhcchhHHHHHHHHHhc-----------cCCcceecchhhccc
Confidence 588999999999999999999999999876543 678899998775544
No 41
>KOG0824 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.81 E-value=9.7e-06 Score=73.29 Aligned_cols=50 Identities=26% Similarity=0.592 Sum_probs=42.2
Q ss_pred CceeccccccCCCcEEccCCCcchHHhHHHHHhhhhHhcccCCCCCCCCccccccccCCC
Q 021263 231 DLTCAVCLDLVFNPYALSCGHLFCKLCACSAASVMVFEGLKSASPDSKCPICREIIHISS 290 (315)
Q Consensus 231 ~l~C~IC~~~~~~Pv~l~CgH~FC~~Ci~~~~~~~~~~~~~~~~~~~~CP~Cr~~v~~~~ 290 (315)
.-.|+||.....-|+.++|+|.||.-||.-... .....|++||.++..+-
T Consensus 7 ~~eC~IC~nt~n~Pv~l~C~HkFCyiCiKGsy~----------ndk~~CavCR~pids~i 56 (324)
T KOG0824|consen 7 KKECLICYNTGNCPVNLYCFHKFCYICIKGSYK----------NDKKTCAVCRFPIDSTI 56 (324)
T ss_pred CCcceeeeccCCcCccccccchhhhhhhcchhh----------cCCCCCceecCCCCcch
Confidence 567999999999999999999999999976532 35567999999988763
No 42
>KOG0297 consensus TNF receptor-associated factor [Signal transduction mechanisms]
Probab=97.78 E-value=1.4e-05 Score=76.82 Aligned_cols=75 Identities=24% Similarity=0.572 Sum_probs=55.2
Q ss_pred CccCceeccccccCCCcEEc-cCCCcchHHhHHHHHhhhhHhcccCCCCCCCCccccccccCCCC---cHHHHHHHHHHH
Q 021263 228 LEYDLTCAVCLDLVFNPYAL-SCGHLFCKLCACSAASVMVFEGLKSASPDSKCPICREIIHISSI---GAGWQLGCKETW 303 (315)
Q Consensus 228 l~~~l~C~IC~~~~~~Pv~l-~CgH~FC~~Ci~~~~~~~~~~~~~~~~~~~~CP~Cr~~v~~~~~---n~~l~~lv~~~~ 303 (315)
++.++.|++|..++.+|+.+ .|||.||..|+..|.. ....||.|+..+...+. .......+.+..
T Consensus 18 ~~~~l~C~~C~~vl~~p~~~~~cgh~fC~~C~~~~~~-----------~~~~cp~~~~~~~~~~~~~~~~~~~~~~~~l~ 86 (391)
T KOG0297|consen 18 LDENLLCPICMSVLRDPVQTTTCGHRFCAGCLLESLS-----------NHQKCPVCRQELTQAEELPVPRALRRELLKLP 86 (391)
T ss_pred CcccccCccccccccCCCCCCCCCCcccccccchhhc-----------cCcCCcccccccchhhccCchHHHHHHHHhcc
Confidence 46789999999999999994 9999999999988753 37899999888666533 244455555444
Q ss_pred HhcccccCCC
Q 021263 304 QEYMRKQSTC 313 (315)
Q Consensus 304 ~e~~~~~~~c 313 (315)
........+|
T Consensus 87 i~c~~~~~GC 96 (391)
T KOG0297|consen 87 IRCIFASRGC 96 (391)
T ss_pred cccccCCCCc
Confidence 4444444454
No 43
>KOG4172 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.77 E-value=5.4e-06 Score=55.67 Aligned_cols=47 Identities=28% Similarity=0.733 Sum_probs=39.0
Q ss_pred CceeccccccCCCcEEccCCC-cchHHhHHHHHhhhhHhcccCCCCCCCCcccccccc
Q 021263 231 DLTCAVCLDLVFNPYALSCGH-LFCKLCACSAASVMVFEGLKSASPDSKCPICREIIH 287 (315)
Q Consensus 231 ~l~C~IC~~~~~~Pv~l~CgH-~FC~~Ci~~~~~~~~~~~~~~~~~~~~CP~Cr~~v~ 287 (315)
...|.||.+-..|.|...||| -.|..|-.+.++ .....||+||+++.
T Consensus 7 ~dECTICye~pvdsVlYtCGHMCmCy~Cg~rl~~----------~~~g~CPiCRapi~ 54 (62)
T KOG4172|consen 7 SDECTICYEHPVDSVLYTCGHMCMCYACGLRLKK----------ALHGCCPICRAPIK 54 (62)
T ss_pred ccceeeeccCcchHHHHHcchHHhHHHHHHHHHH----------ccCCcCcchhhHHH
Confidence 378999999888888889999 569999877754 46788999999865
No 44
>COG5222 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=97.77 E-value=2.4e-05 Score=70.50 Aligned_cols=64 Identities=30% Similarity=0.673 Sum_probs=48.6
Q ss_pred CceeccccccCCCcEEc-cCCCcchHHhHHHHHhhhhHhcccCCCCCCCCcccccc-ccCCCC--cHHHHHHHHHHHH
Q 021263 231 DLTCAVCLDLVFNPYAL-SCGHLFCKLCACSAASVMVFEGLKSASPDSKCPICREI-IHISSI--GAGWQLGCKETWQ 304 (315)
Q Consensus 231 ~l~C~IC~~~~~~Pv~l-~CgH~FC~~Ci~~~~~~~~~~~~~~~~~~~~CP~Cr~~-v~~~~~--n~~l~~lv~~~~~ 304 (315)
.+.||.|..++.+|+.+ .|+|+||..||...+- ...+.||.|... |....+ +...+.-|+.++.
T Consensus 274 ~LkCplc~~Llrnp~kT~cC~~~fc~eci~~al~----------dsDf~CpnC~rkdvlld~l~pD~dk~~EvE~~lk 341 (427)
T COG5222 274 SLKCPLCHCLLRNPMKTPCCGHTFCDECIGTALL----------DSDFKCPNCSRKDVLLDGLTPDIDKKLEVEKALK 341 (427)
T ss_pred cccCcchhhhhhCcccCccccchHHHHHHhhhhh----------hccccCCCcccccchhhccCccHHHHHHHHHHHH
Confidence 38999999999999998 4999999999987752 367899999664 444444 4555556666654
No 45
>PF11789 zf-Nse: Zinc-finger of the MIZ type in Nse subunit; PDB: 2YU4_A 3HTK_C.
Probab=97.76 E-value=1.4e-05 Score=55.37 Aligned_cols=43 Identities=26% Similarity=0.546 Sum_probs=30.1
Q ss_pred cCceeccccccCCCcEE-ccCCCcchHHhHHHHHhhhhHhcccCCCCCCCCcc
Q 021263 230 YDLTCAVCLDLVFNPYA-LSCGHLFCKLCACSAASVMVFEGLKSASPDSKCPI 281 (315)
Q Consensus 230 ~~l~C~IC~~~~~~Pv~-l~CgH~FC~~Ci~~~~~~~~~~~~~~~~~~~~CP~ 281 (315)
..+.|||.+..+.+||. ..|||+|....|..+++ ......||+
T Consensus 10 ~~~~CPiT~~~~~~PV~s~~C~H~fek~aI~~~i~---------~~~~~~CPv 53 (57)
T PF11789_consen 10 ISLKCPITLQPFEDPVKSKKCGHTFEKEAILQYIQ---------RNGSKRCPV 53 (57)
T ss_dssp --SB-TTTSSB-SSEEEESSS--EEEHHHHHHHCT---------TTS-EE-SC
T ss_pred eccCCCCcCChhhCCcCcCCCCCeecHHHHHHHHH---------hcCCCCCCC
Confidence 46899999999999998 58999999999988852 246788998
No 46
>KOG2879 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.75 E-value=2.6e-05 Score=69.65 Aligned_cols=50 Identities=28% Similarity=0.732 Sum_probs=41.3
Q ss_pred ccCceeccccccCCCcEEc-cCCCcchHHhHHHHHhhhhHhcccCCCCCCCCcccccccc
Q 021263 229 EYDLTCAVCLDLVFNPYAL-SCGHLFCKLCACSAASVMVFEGLKSASPDSKCPICREIIH 287 (315)
Q Consensus 229 ~~~l~C~IC~~~~~~Pv~l-~CgH~FC~~Ci~~~~~~~~~~~~~~~~~~~~CP~Cr~~v~ 287 (315)
..+.+||+|.+....|.+. +|||.||..||..... -...+.||.|..++.
T Consensus 237 t~~~~C~~Cg~~PtiP~~~~~C~HiyCY~Ci~ts~~---------~~asf~Cp~Cg~~~~ 287 (298)
T KOG2879|consen 237 TSDTECPVCGEPPTIPHVIGKCGHIYCYYCIATSRL---------WDASFTCPLCGENVE 287 (298)
T ss_pred cCCceeeccCCCCCCCeeeccccceeehhhhhhhhc---------chhhcccCccCCCCc
Confidence 3678999999999999886 6999999999977532 135689999998876
No 47
>PF12861 zf-Apc11: Anaphase-promoting complex subunit 11 RING-H2 finger
Probab=97.65 E-value=4.9e-05 Score=56.58 Aligned_cols=37 Identities=30% Similarity=0.668 Sum_probs=28.2
Q ss_pred cEEc-cCCCcchHHhHHHHHhhhhHhcccCCCCCCCCccccccccC
Q 021263 244 PYAL-SCGHLFCKLCACSAASVMVFEGLKSASPDSKCPICREIIHI 288 (315)
Q Consensus 244 Pv~l-~CgH~FC~~Ci~~~~~~~~~~~~~~~~~~~~CP~Cr~~v~~ 288 (315)
|+.. .|+|.|...||.+|++ ..+....||+||++...
T Consensus 46 plv~g~C~H~FH~hCI~kWl~--------~~~~~~~CPmCR~~w~~ 83 (85)
T PF12861_consen 46 PLVWGKCSHNFHMHCILKWLS--------TQSSKGQCPMCRQPWKF 83 (85)
T ss_pred ceeeccCccHHHHHHHHHHHc--------cccCCCCCCCcCCeeee
Confidence 4444 6999999999999965 12345799999998653
No 48
>KOG1813 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.46 E-value=3.7e-05 Score=69.41 Aligned_cols=48 Identities=31% Similarity=0.829 Sum_probs=40.2
Q ss_pred CceeccccccCCCcEEccCCCcchHHhHHHHHhhhhHhcccCCCCCCCCccccccccCC
Q 021263 231 DLTCAVCLDLVFNPYALSCGHLFCKLCACSAASVMVFEGLKSASPDSKCPICREIIHIS 289 (315)
Q Consensus 231 ~l~C~IC~~~~~~Pv~l~CgH~FC~~Ci~~~~~~~~~~~~~~~~~~~~CP~Cr~~v~~~ 289 (315)
.+.|-||...|.+||.+.|||.||..|..+.+ .....|++|.+.+.-.
T Consensus 241 Pf~c~icr~~f~~pVvt~c~h~fc~~ca~~~~-----------qk~~~c~vC~~~t~g~ 288 (313)
T KOG1813|consen 241 PFKCFICRKYFYRPVVTKCGHYFCEVCALKPY-----------QKGEKCYVCSQQTHGS 288 (313)
T ss_pred CccccccccccccchhhcCCceeehhhhcccc-----------ccCCcceecccccccc
Confidence 47799999999999999999999999985443 3668899998776644
No 49
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]
Probab=97.33 E-value=0.0006 Score=66.09 Aligned_cols=54 Identities=26% Similarity=0.636 Sum_probs=43.2
Q ss_pred cCceeccccccCCCcEEccCCCcchHHhHHHHHhhhhHhcccCCCCCCCCccccccccCC
Q 021263 230 YDLTCAVCLDLVFNPYALSCGHLFCKLCACSAASVMVFEGLKSASPDSKCPICREIIHIS 289 (315)
Q Consensus 230 ~~l~C~IC~~~~~~Pv~l~CgH~FC~~Ci~~~~~~~~~~~~~~~~~~~~CP~Cr~~v~~~ 289 (315)
....|.+|.+.-.+++...|.|.||..|+..+.. +... +....||+|...+...
T Consensus 535 ~~~~C~lc~d~aed~i~s~ChH~FCrlCi~eyv~-----~f~~-~~nvtCP~C~i~LsiD 588 (791)
T KOG1002|consen 535 GEVECGLCHDPAEDYIESSCHHKFCRLCIKEYVE-----SFME-NNNVTCPVCHIGLSID 588 (791)
T ss_pred CceeecccCChhhhhHhhhhhHHHHHHHHHHHHH-----hhhc-ccCCCCcccccccccc
Confidence 4688999999999999999999999999988742 2222 3458999998775543
No 50
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=97.30 E-value=0.00012 Score=69.63 Aligned_cols=49 Identities=33% Similarity=0.552 Sum_probs=39.6
Q ss_pred cCccCceeccccccCCCcE----EccCCCcchHHhHHHHHhhhhHhcccCCCCCCCCccccccccC
Q 021263 227 KLEYDLTCAVCLDLVFNPY----ALSCGHLFCKLCACSAASVMVFEGLKSASPDSKCPICREIIHI 288 (315)
Q Consensus 227 ~l~~~l~C~IC~~~~~~Pv----~l~CgH~FC~~Ci~~~~~~~~~~~~~~~~~~~~CP~Cr~~v~~ 288 (315)
.+.+.-+||||++-+..-+ ++.|.|+|...|+..|+ ..+||+||....+
T Consensus 171 ~~tELPTCpVCLERMD~s~~gi~t~~c~Hsfh~~cl~~w~-------------~~scpvcR~~q~p 223 (493)
T KOG0804|consen 171 GLTELPTCPVCLERMDSSTTGILTILCNHSFHCSCLMKWW-------------DSSCPVCRYCQSP 223 (493)
T ss_pred CcccCCCcchhHhhcCccccceeeeecccccchHHHhhcc-------------cCcChhhhhhcCc
Confidence 3457789999999887664 35799999999999984 4689999977663
No 51
>KOG4265 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.12 E-value=0.00032 Score=65.16 Aligned_cols=49 Identities=37% Similarity=0.748 Sum_probs=40.3
Q ss_pred ccCceeccccccCCCcEEccCCCc-chHHhHHHHHhhhhHhcccCCCCCCCCccccccccC
Q 021263 229 EYDLTCAVCLDLVFNPYALSCGHL-FCKLCACSAASVMVFEGLKSASPDSKCPICREIIHI 288 (315)
Q Consensus 229 ~~~l~C~IC~~~~~~Pv~l~CgH~-FC~~Ci~~~~~~~~~~~~~~~~~~~~CP~Cr~~v~~ 288 (315)
+....|-||+.-..|-+.+||.|. .|..|....- -....||+||+++..
T Consensus 288 ~~gkeCVIClse~rdt~vLPCRHLCLCs~Ca~~Lr-----------~q~n~CPICRqpi~~ 337 (349)
T KOG4265|consen 288 ESGKECVICLSESRDTVVLPCRHLCLCSGCAKSLR-----------YQTNNCPICRQPIEE 337 (349)
T ss_pred cCCCeeEEEecCCcceEEecchhhehhHhHHHHHH-----------HhhcCCCccccchHh
Confidence 346899999999999999999994 5999986541 256789999999764
No 52
>PF11793 FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A.
Probab=96.98 E-value=0.00027 Score=51.13 Aligned_cols=56 Identities=27% Similarity=0.592 Sum_probs=25.0
Q ss_pred CceeccccccCC-C---cEEc----cCCCcchHHhHHHHHhhhhHhcccC--CCCCCCCccccccccC
Q 021263 231 DLTCAVCLDLVF-N---PYAL----SCGHLFCKLCACSAASVMVFEGLKS--ASPDSKCPICREIIHI 288 (315)
Q Consensus 231 ~l~C~IC~~~~~-~---Pv~l----~CgH~FC~~Ci~~~~~~~~~~~~~~--~~~~~~CP~Cr~~v~~ 288 (315)
+..|+||..... + |... .|+..|...|+.+|+.. ....+. ....+.||.|+.++.-
T Consensus 2 ~~~C~IC~~~~~~~~~~p~~~C~n~~C~~~fH~~CL~~wf~~--~~~~~~~~~~~~G~CP~C~~~i~~ 67 (70)
T PF11793_consen 2 ELECGICYSYRLDDGEIPDVVCPNPSCGKKFHLLCLSEWFLS--LEKSRQSFIPIFGECPYCSSPISW 67 (70)
T ss_dssp --S-SSS--SS-TT-----B--S-TT----B-SGGGHHHHHH--HHSSS-TTT--EEE-TTT-SEEEG
T ss_pred CCCCCcCCcEecCCCCcCceEcCCcccCCHHHHHHHHHHHHH--cccCCeeecccccCCcCCCCeeeE
Confidence 468999998754 2 3332 69999999999999852 121111 1123679999998754
No 53
>KOG4367 consensus Predicted Zn-finger protein [Function unknown]
Probab=96.88 E-value=0.00041 Score=65.72 Aligned_cols=32 Identities=38% Similarity=0.842 Sum_probs=29.8
Q ss_pred ccCceeccccccCCCcEEccCCCcchHHhHHH
Q 021263 229 EYDLTCAVCLDLVFNPYALSCGHLFCKLCACS 260 (315)
Q Consensus 229 ~~~l~C~IC~~~~~~Pv~l~CgH~FC~~Ci~~ 260 (315)
++++.||||...+.+|++++|+|+.|..|...
T Consensus 2 eeelkc~vc~~f~~epiil~c~h~lc~~ca~~ 33 (699)
T KOG4367|consen 2 EEELKCPVCGSFYREPIILPCSHNLCQACARN 33 (699)
T ss_pred cccccCceehhhccCceEeecccHHHHHHHHh
Confidence 57899999999999999999999999999864
No 54
>KOG1039 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.79 E-value=0.00072 Score=63.53 Aligned_cols=55 Identities=22% Similarity=0.575 Sum_probs=40.4
Q ss_pred ccCceeccccccCCCcE-----E---ccCCCcchHHhHHHHHhhhhHhcccCCCCCCCCcccccccc
Q 021263 229 EYDLTCAVCLDLVFNPY-----A---LSCGHLFCKLCACSAASVMVFEGLKSASPDSKCPICREIIH 287 (315)
Q Consensus 229 ~~~l~C~IC~~~~~~Pv-----~---l~CgH~FC~~Ci~~~~~~~~~~~~~~~~~~~~CP~Cr~~v~ 287 (315)
..+..|-||++...++. . .+|.|.||..||..|-..... .......||.||....
T Consensus 159 s~~k~CGICme~i~ek~~~~~rfgilpnC~H~~Cl~Cir~wr~~~q~----~~~~sksCP~CRv~s~ 221 (344)
T KOG1039|consen 159 SSEKECGICMETINEKAASERRFGILPNCNHSFCLNCIRKWRQATQF----ESKTSKSCPFCRVPSS 221 (344)
T ss_pred cccccceehhhhccccchhhhhcccCCCcchhhhhcHhHhhhhhhcc----ccccccCCCcccCccc
Confidence 35789999999888776 3 469999999999998431111 1234689999998843
No 55
>KOG1785 consensus Tyrosine kinase negative regulator CBL [Defense mechanisms]
Probab=96.67 E-value=0.00087 Score=62.94 Aligned_cols=49 Identities=27% Similarity=0.619 Sum_probs=39.5
Q ss_pred ceeccccccCCCcEEccCCCcchHHhHHHHHhhhhHhcccCCCCCCCCccccccccCC
Q 021263 232 LTCAVCLDLVFNPYALSCGHLFCKLCACSAASVMVFEGLKSASPDSKCPICREIIHIS 289 (315)
Q Consensus 232 l~C~IC~~~~~~Pv~l~CgH~FC~~Ci~~~~~~~~~~~~~~~~~~~~CP~Cr~~v~~~ 289 (315)
-.|-||-+-=.|-.+-||||..|..|+..|.. +..+..||.||..+.-+
T Consensus 370 eLCKICaendKdvkIEPCGHLlCt~CLa~WQ~---------sd~gq~CPFCRcEIKGt 418 (563)
T KOG1785|consen 370 ELCKICAENDKDVKIEPCGHLLCTSCLAAWQD---------SDEGQTCPFCRCEIKGT 418 (563)
T ss_pred HHHHHhhccCCCcccccccchHHHHHHHhhcc---------cCCCCCCCceeeEeccc
Confidence 46899999888877779999999999988842 23478999999886554
No 56
>KOG4275 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.63 E-value=0.00046 Score=62.27 Aligned_cols=42 Identities=38% Similarity=0.886 Sum_probs=35.0
Q ss_pred CceeccccccCCCcEEccCCC-cchHHhHHHHHhhhhHhcccCCCCCCCCcccccccc
Q 021263 231 DLTCAVCLDLVFNPYALSCGH-LFCKLCACSAASVMVFEGLKSASPDSKCPICREIIH 287 (315)
Q Consensus 231 ~l~C~IC~~~~~~Pv~l~CgH-~FC~~Ci~~~~~~~~~~~~~~~~~~~~CP~Cr~~v~ 287 (315)
...|.||++...|-+.|+||| .-|-.|- .....||+||+.+.
T Consensus 300 ~~LC~ICmDaP~DCvfLeCGHmVtCt~CG---------------krm~eCPICRqyi~ 342 (350)
T KOG4275|consen 300 RRLCAICMDAPRDCVFLECGHMVTCTKCG---------------KRMNECPICRQYIV 342 (350)
T ss_pred HHHHHHHhcCCcceEEeecCcEEeehhhc---------------cccccCchHHHHHH
Confidence 678999999999999999999 4588885 24558999998753
No 57
>PF14447 Prok-RING_4: Prokaryotic RING finger family 4
Probab=96.46 E-value=0.0018 Score=44.02 Aligned_cols=48 Identities=25% Similarity=0.575 Sum_probs=37.7
Q ss_pred cCceeccccccCCCcEEccCCCcchHHhHHHHHhhhhHhcccCCCCCCCCccccccccCCC
Q 021263 230 YDLTCAVCLDLVFNPYALSCGHLFCKLCACSAASVMVFEGLKSASPDSKCPICREIIHISS 290 (315)
Q Consensus 230 ~~l~C~IC~~~~~~Pv~l~CgH~FC~~Ci~~~~~~~~~~~~~~~~~~~~CP~Cr~~v~~~~ 290 (315)
....|-.|...-...+.++|||..|..|..- ..-..||.|..++...+
T Consensus 6 ~~~~~~~~~~~~~~~~~~pCgH~I~~~~f~~-------------~rYngCPfC~~~~~~~~ 53 (55)
T PF14447_consen 6 PEQPCVFCGFVGTKGTVLPCGHLICDNCFPG-------------ERYNGCPFCGTPFEFDD 53 (55)
T ss_pred cceeEEEccccccccccccccceeeccccCh-------------hhccCCCCCCCcccCCC
Confidence 4567888888777788899999999999743 24567999999876543
No 58
>KOG0827 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.45 E-value=0.0024 Score=59.86 Aligned_cols=50 Identities=26% Similarity=0.643 Sum_probs=34.1
Q ss_pred ceeccccccCCCcEE---c-cCCCcchHHhHHHHHhhhhHhcccCCCCCCCCccccccccCC
Q 021263 232 LTCAVCLDLVFNPYA---L-SCGHLFCKLCACSAASVMVFEGLKSASPDSKCPICREIIHIS 289 (315)
Q Consensus 232 l~C~IC~~~~~~Pv~---l-~CgH~FC~~Ci~~~~~~~~~~~~~~~~~~~~CP~Cr~~v~~~ 289 (315)
-.|.||.+.+-.-.- + .|||+|...|+.+|+. .......||+|+-.+...
T Consensus 5 A~C~Ic~d~~p~~~~l~~i~~cGhifh~~cl~qwfe--------~~Ps~R~cpic~ik~~~r 58 (465)
T KOG0827|consen 5 AECHICIDGRPNDHELGPIGTCGHIFHTTCLTQWFE--------GDPSNRGCPICQIKLQER 58 (465)
T ss_pred ceeeEeccCCccccccccccchhhHHHHHHHHHHHc--------cCCccCCCCceeecccce
Confidence 469999665443222 3 4999999999999974 112236899999544443
No 59
>KOG0828 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.34 E-value=0.002 Score=62.13 Aligned_cols=50 Identities=20% Similarity=0.493 Sum_probs=37.6
Q ss_pred ccCceeccccccCC-----C------------cEEccCCCcchHHhHHHHHhhhhHhcccCCCCCCCCccccccccC
Q 021263 229 EYDLTCAVCLDLVF-----N------------PYALSCGHLFCKLCACSAASVMVFEGLKSASPDSKCPICREIIHI 288 (315)
Q Consensus 229 ~~~l~C~IC~~~~~-----~------------Pv~l~CgH~FC~~Ci~~~~~~~~~~~~~~~~~~~~CP~Cr~~v~~ 288 (315)
+...-|+||+.... . -+.+||.|.|...|+.+|+. .....||+||.+++.
T Consensus 569 ~~t~dC~ICMt~I~l~~~~s~~~~~~~~~~~nYm~tPC~HifH~~CL~~WMd----------~ykl~CPvCR~pLPp 635 (636)
T KOG0828|consen 569 RRTNDCVICMTPIDLRSTGSDCMVASMMVRRNYMLTPCHHIFHRQCLLQWMD----------TYKLICPVCRCPLPP 635 (636)
T ss_pred hccccceEeccccceeeccCcchhhhhhhhccccccchHHHHHHHHHHHHHh----------hhcccCCccCCCCCC
Confidence 45678999996443 1 13359999999999999964 345689999998763
No 60
>KOG1571 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.28 E-value=0.0022 Score=59.73 Aligned_cols=44 Identities=34% Similarity=0.812 Sum_probs=35.5
Q ss_pred cCceeccccccCCCcEEccCCCcchHHhHHHHHhhhhHhcccCCCCCCCCcccccccc
Q 021263 230 YDLTCAVCLDLVFNPYALSCGHLFCKLCACSAASVMVFEGLKSASPDSKCPICREIIH 287 (315)
Q Consensus 230 ~~l~C~IC~~~~~~Pv~l~CgH~FC~~Ci~~~~~~~~~~~~~~~~~~~~CP~Cr~~v~ 287 (315)
...-|.||.+-..+.+.+||||.-| |..-+ .....||+||..+.
T Consensus 304 ~p~lcVVcl~e~~~~~fvpcGh~cc--ct~cs------------~~l~~CPvCR~rI~ 347 (355)
T KOG1571|consen 304 QPDLCVVCLDEPKSAVFVPCGHVCC--CTLCS------------KHLPQCPVCRQRIR 347 (355)
T ss_pred CCCceEEecCCccceeeecCCcEEE--chHHH------------hhCCCCchhHHHHH
Confidence 4577999999999999999999877 77544 24566999998754
No 61
>COG5219 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=96.12 E-value=0.0018 Score=66.71 Aligned_cols=51 Identities=27% Similarity=0.596 Sum_probs=39.5
Q ss_pred CccCceeccccccCC-----Cc--EEccCCCcchHHhHHHHHhhhhHhcccCCCCCCCCcccccccc
Q 021263 228 LEYDLTCAVCLDLVF-----NP--YALSCGHLFCKLCACSAASVMVFEGLKSASPDSKCPICREIIH 287 (315)
Q Consensus 228 l~~~l~C~IC~~~~~-----~P--v~l~CgH~FC~~Ci~~~~~~~~~~~~~~~~~~~~CP~Cr~~v~ 287 (315)
+...-.|+||..++. -| ....|.|.|..+|+.+|++ .++...||.||..++
T Consensus 1466 fsG~eECaICYsvL~~vdr~lPskrC~TCknKFH~~CLyKWf~---------Ss~~s~CPlCRseit 1523 (1525)
T COG5219 1466 FSGHEECAICYSVLDMVDRSLPSKRCATCKNKFHTRCLYKWFA---------SSARSNCPLCRSEIT 1523 (1525)
T ss_pred cCCcchhhHHHHHHHHHhccCCccccchhhhhhhHHHHHHHHH---------hcCCCCCCccccccc
Confidence 445678999997765 23 2246999999999999986 357789999997754
No 62
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=96.10 E-value=0.0011 Score=67.00 Aligned_cols=49 Identities=22% Similarity=0.434 Sum_probs=39.6
Q ss_pred cCceeccccccCCCcEE---ccCCCcchHHhHHHHHhhhhHhcccCCCCCCCCccccccccCC
Q 021263 230 YDLTCAVCLDLVFNPYA---LSCGHLFCKLCACSAASVMVFEGLKSASPDSKCPICREIIHIS 289 (315)
Q Consensus 230 ~~l~C~IC~~~~~~Pv~---l~CgH~FC~~Ci~~~~~~~~~~~~~~~~~~~~CP~Cr~~v~~~ 289 (315)
..-.||+|+..+.+-.. .+|+|.||..||..|-+ ....||+||..+...
T Consensus 122 ~~~~CP~Ci~s~~DqL~~~~k~c~H~FC~~Ci~sWsR-----------~aqTCPiDR~EF~~v 173 (1134)
T KOG0825|consen 122 VENQCPNCLKSCNDQLEESEKHTAHYFCEECVGSWSR-----------CAQTCPVDRGEFGEV 173 (1134)
T ss_pred hhhhhhHHHHHHHHHhhccccccccccHHHHhhhhhh-----------hcccCchhhhhhhee
Confidence 45789999988776543 37999999999999854 678999999986554
No 63
>KOG3002 consensus Zn finger protein [General function prediction only]
Probab=96.09 E-value=0.005 Score=57.04 Aligned_cols=72 Identities=24% Similarity=0.387 Sum_probs=57.3
Q ss_pred CccCceeccccccCCCcEE-ccCCCcchHHhHHHHHhhhhHhcccCCCCCCCCccccccccCCCCcHHHHHHHHHHHHhc
Q 021263 228 LEYDLTCAVCLDLVFNPYA-LSCGHLFCKLCACSAASVMVFEGLKSASPDSKCPICREIIHISSIGAGWQLGCKETWQEY 306 (315)
Q Consensus 228 l~~~l~C~IC~~~~~~Pv~-l~CgH~FC~~Ci~~~~~~~~~~~~~~~~~~~~CP~Cr~~v~~~~~n~~l~~lv~~~~~e~ 306 (315)
+.+.+.||||.+.+..|+. =+=||.-|..|-.+ -...||.||.++. .-.++.+..+++......
T Consensus 45 ~~~lleCPvC~~~l~~Pi~QC~nGHlaCssC~~~--------------~~~~CP~Cr~~~g-~~R~~amEkV~e~~~vpC 109 (299)
T KOG3002|consen 45 DLDLLDCPVCFNPLSPPIFQCDNGHLACSSCRTK--------------VSNKCPTCRLPIG-NIRCRAMEKVAEAVLVPC 109 (299)
T ss_pred chhhccCchhhccCcccceecCCCcEehhhhhhh--------------hcccCCccccccc-cHHHHHHHHHHHhceecc
Confidence 4467999999999999965 35799999999743 4578999999998 446899998888887766
Q ss_pred ccccCCCC
Q 021263 307 MRKQSTCL 314 (315)
Q Consensus 307 ~~~~~~c~ 314 (315)
+....+|.
T Consensus 110 ~~~~~GC~ 117 (299)
T KOG3002|consen 110 KNAKLGCT 117 (299)
T ss_pred cccccCCc
Confidence 66666664
No 64
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.02 E-value=0.0047 Score=58.35 Aligned_cols=53 Identities=30% Similarity=0.642 Sum_probs=41.9
Q ss_pred cCceeccccccCCCc-----EEccCCCcchHHhHHHHHhhhhHhcccCCCCCCCCccccccccCCCC
Q 021263 230 YDLTCAVCLDLVFNP-----YALSCGHLFCKLCACSAASVMVFEGLKSASPDSKCPICREIIHISSI 291 (315)
Q Consensus 230 ~~l~C~IC~~~~~~P-----v~l~CgH~FC~~Ci~~~~~~~~~~~~~~~~~~~~CP~Cr~~v~~~~~ 291 (315)
...+||||++-+.-| +.+.|||.|-..||.+|+. ......||.|......+.+
T Consensus 3 ~g~tcpiclds~~~~g~hr~vsl~cghlFgs~cie~wl~---------k~~~~~cp~c~~katkr~i 60 (463)
T KOG1645|consen 3 CGTTCPICLDSYTTAGNHRIVSLQCGHLFGSQCIEKWLG---------KKTKMQCPLCSGKATKRQI 60 (463)
T ss_pred ccccCceeeeeeeecCceEEeeecccccccHHHHHHHHh---------hhhhhhCcccCChhHHHHH
Confidence 357899999988877 3467999999999999962 2466789999877666544
No 65
>KOG3039 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.98 E-value=0.0045 Score=54.73 Aligned_cols=51 Identities=22% Similarity=0.290 Sum_probs=42.4
Q ss_pred cCceeccccccCCCcEE----ccCCCcchHHhHHHHHhhhhHhcccCCCCCCCCccccccccCCCC
Q 021263 230 YDLTCAVCLDLVFNPYA----LSCGHLFCKLCACSAASVMVFEGLKSASPDSKCPICREIIHISSI 291 (315)
Q Consensus 230 ~~l~C~IC~~~~~~Pv~----l~CgH~FC~~Ci~~~~~~~~~~~~~~~~~~~~CP~Cr~~v~~~~~ 291 (315)
..+.||||.+.+.+.+. -+|||.||..|+.+..+ ....||+|-.++..+++
T Consensus 220 ~ryiCpvtrd~LtNt~~ca~Lr~sg~Vv~~ecvEklir-----------~D~v~pv~d~plkdrdi 274 (303)
T KOG3039|consen 220 KRYICPVTRDTLTNTTPCAVLRPSGHVVTKECVEKLIR-----------KDMVDPVTDKPLKDRDI 274 (303)
T ss_pred cceecccchhhhcCccceEEeccCCcEeeHHHHHHhcc-----------ccccccCCCCcCcccce
Confidence 56999999999998643 38999999999998753 67889999988877754
No 66
>KOG4739 consensus Uncharacterized protein involved in synaptonemal complex formation [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=95.93 E-value=0.0025 Score=56.38 Aligned_cols=60 Identities=23% Similarity=0.696 Sum_probs=39.6
Q ss_pred ceeccccccC-CCcEE-ccCCCcchHHhHHHHHhhhhHhcccCCCCCCCCccccccccCCCCcHHHHHHHHHHHH
Q 021263 232 LTCAVCLDLV-FNPYA-LSCGHLFCKLCACSAASVMVFEGLKSASPDSKCPICREIIHISSIGAGWQLGCKETWQ 304 (315)
Q Consensus 232 l~C~IC~~~~-~~Pv~-l~CgH~FC~~Ci~~~~~~~~~~~~~~~~~~~~CP~Cr~~v~~~~~n~~l~~lv~~~~~ 304 (315)
.-|-.|.... .+|.. +.|+|.||..|..-. ....||+|+.++....+|..|-.-+..|+.
T Consensus 4 VhCn~C~~~~~~~~f~LTaC~HvfC~~C~k~~-------------~~~~C~lCkk~ir~i~l~~slp~~ik~~F~ 65 (233)
T KOG4739|consen 4 VHCNKCFRFPSQDPFFLTACRHVFCEPCLKAS-------------SPDVCPLCKKSIRIIQLNRSLPTDIKSYFA 65 (233)
T ss_pred EEeccccccCCCCceeeeechhhhhhhhcccC-------------CccccccccceeeeeecccccchhHHHHcc
Confidence 4577776532 45544 589999999998432 333899999997777665444444444443
No 67
>KOG1734 consensus Predicted RING-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.90 E-value=0.002 Score=57.62 Aligned_cols=52 Identities=31% Similarity=0.695 Sum_probs=40.4
Q ss_pred cCceeccccccCCCc----------EEccCCCcchHHhHHHHHhhhhHhcccCCCCCCCCccccccccCCC
Q 021263 230 YDLTCAVCLDLVFNP----------YALSCGHLFCKLCACSAASVMVFEGLKSASPDSKCPICREIIHISS 290 (315)
Q Consensus 230 ~~l~C~IC~~~~~~P----------v~l~CgH~FC~~Ci~~~~~~~~~~~~~~~~~~~~CP~Cr~~v~~~~ 290 (315)
++..|.||...+... ..++|+|.|.-.||.-|-- -+....||.|+..|..+.
T Consensus 223 ~d~vCaVCg~~~~~s~~eegvienty~LsCnHvFHEfCIrGWci---------vGKkqtCPYCKekVdl~r 284 (328)
T KOG1734|consen 223 SDSVCAVCGQQIDVSVDEEGVIENTYKLSCNHVFHEFCIRGWCI---------VGKKQTCPYCKEKVDLKR 284 (328)
T ss_pred CcchhHhhcchheeecchhhhhhhheeeecccchHHHhhhhhee---------ecCCCCCchHHHHhhHhh
Confidence 567899999766533 4689999999999988732 245678999999887763
No 68
>KOG4692 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.85 E-value=0.0059 Score=56.64 Aligned_cols=49 Identities=20% Similarity=0.420 Sum_probs=41.2
Q ss_pred ccCceeccccccCCCcEEccCCCcchHHhHHHHHhhhhHhcccCCCCCCCCccccccccC
Q 021263 229 EYDLTCAVCLDLVFNPYALSCGHLFCKLCACSAASVMVFEGLKSASPDSKCPICREIIHI 288 (315)
Q Consensus 229 ~~~l~C~IC~~~~~~Pv~l~CgH~FC~~Ci~~~~~~~~~~~~~~~~~~~~CP~Cr~~v~~ 288 (315)
.++..||||.--..++|..||+|.-|..||.+.+- +...|-.|++.+..
T Consensus 420 sEd~lCpICyA~pi~Avf~PC~H~SC~~CI~qHlm-----------N~k~CFfCktTv~~ 468 (489)
T KOG4692|consen 420 SEDNLCPICYAGPINAVFAPCSHRSCYGCITQHLM-----------NCKRCFFCKTTVID 468 (489)
T ss_pred cccccCcceecccchhhccCCCCchHHHHHHHHHh-----------cCCeeeEecceeee
Confidence 46789999998888888899999999999988742 56789999887664
No 69
>smart00744 RINGv The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins. Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity. The RING-variant domain is reminiscent of both the RING and the PHD domains and may represent an evolutionary intermediate. To describe this domain the term PHD/LAP domain has been used in the past. Extended description: The RING-variant (RINGv) domain contains a C4HC3 zinc-finger-like motif similar to the PHD domain, while some of the spacing between the Cys/His residues follow a pattern somewhat closer to that found in the RING domain. The RINGv domain, similar to the RING, PHD and LIM domains, is thought to bind two zinc ions co-ordinated by the highly conserved Cys and His residues. RING variant domain: C-x (2) -C-x(10-45)-C-x (1) -C-x (7) -H-x(2)-C-x(11-25)-C-x(2)-C As opposed to a PHD: C-x(1-2) -C-x (7-13)-C-x(2-4)-C-x(4-5)-H-x(2)-C-x(10-21)-C-x(2)-C Class
Probab=95.81 E-value=0.01 Score=39.79 Aligned_cols=42 Identities=24% Similarity=0.550 Sum_probs=31.6
Q ss_pred eeccccc--cCCCcEEccCC-----CcchHHhHHHHHhhhhHhcccCCCCCCCCcccc
Q 021263 233 TCAVCLD--LVFNPYALSCG-----HLFCKLCACSAASVMVFEGLKSASPDSKCPICR 283 (315)
Q Consensus 233 ~C~IC~~--~~~~Pv~l~Cg-----H~FC~~Ci~~~~~~~~~~~~~~~~~~~~CP~Cr 283 (315)
.|.||++ .-.+|...||. |.+...|+.+|+. ......||+|+
T Consensus 1 ~CrIC~~~~~~~~~l~~PC~C~G~~~~vH~~Cl~~W~~---------~~~~~~C~iC~ 49 (49)
T smart00744 1 ICRICHDEGDEGDPLVSPCRCKGSLKYVHQECLERWIN---------ESGNKTCEICK 49 (49)
T ss_pred CccCCCCCCCCCCeeEeccccCCchhHHHHHHHHHHHH---------HcCCCcCCCCC
Confidence 4889987 45567778885 6799999999975 12456899994
No 70
>PF14570 zf-RING_4: RING/Ubox like zinc-binding domain; PDB: 1E4U_A 1UR6_B.
Probab=95.77 E-value=0.0067 Score=40.23 Aligned_cols=43 Identities=26% Similarity=0.693 Sum_probs=20.0
Q ss_pred eccccccCCCc--EEc--cCCCcchHHhHHHHHhhhhHhcccCCCCCCCCccccccc
Q 021263 234 CAVCLDLVFNP--YAL--SCGHLFCKLCACSAASVMVFEGLKSASPDSKCPICREII 286 (315)
Q Consensus 234 C~IC~~~~~~P--v~l--~CgH~FC~~Ci~~~~~~~~~~~~~~~~~~~~CP~Cr~~v 286 (315)
||+|.+.+..- -.. +||+.+|..|..+... .....||-||.+.
T Consensus 1 cp~C~e~~d~~d~~~~PC~Cgf~IC~~C~~~i~~----------~~~g~CPgCr~~Y 47 (48)
T PF14570_consen 1 CPLCDEELDETDKDFYPCECGFQICRFCYHDILE----------NEGGRCPGCREPY 47 (48)
T ss_dssp -TTTS-B--CCCTT--SSTTS----HHHHHHHTT----------SS-SB-TTT--B-
T ss_pred CCCcccccccCCCccccCcCCCcHHHHHHHHHHh----------ccCCCCCCCCCCC
Confidence 78888866211 123 5999999999877632 3578999999875
No 71
>KOG3800 consensus Predicted E3 ubiquitin ligase containing RING finger, subunit of transcription/repair factor TFIIH and CDK-activating kinase assembly factor [Posttranslational modification, protein turnover, chaperones]
Probab=95.67 E-value=0.0088 Score=54.21 Aligned_cols=48 Identities=29% Similarity=0.658 Sum_probs=37.5
Q ss_pred eeccccc-cCCCcEE----ccCCCcchHHhHHHHHhhhhHhcccCCCCCCCCccccccccCCC
Q 021263 233 TCAVCLD-LVFNPYA----LSCGHLFCKLCACSAASVMVFEGLKSASPDSKCPICREIIHISS 290 (315)
Q Consensus 233 ~C~IC~~-~~~~Pv~----l~CgH~FC~~Ci~~~~~~~~~~~~~~~~~~~~CP~Cr~~v~~~~ 290 (315)
.||+|.. .+.+|-. -+|||+.|-+|+.+.+. .+...||.|-..+....
T Consensus 2 ~Cp~CKt~~Y~np~lk~~in~C~H~lCEsCvd~iF~----------~g~~~CpeC~~iLRk~n 54 (300)
T KOG3800|consen 2 ACPKCKTDRYLNPDLKLMINECGHRLCESCVDRIFS----------LGPAQCPECMVILRKNN 54 (300)
T ss_pred CCcccccceecCccceeeeccccchHHHHHHHHHHh----------cCCCCCCcccchhhhcc
Confidence 4999986 4667722 27999999999999875 57889999977765543
No 72
>KOG0826 consensus Predicted E3 ubiquitin ligase involved in peroxisome organization [Posttranslational modification, protein turnover, chaperones]
Probab=95.65 E-value=0.0064 Score=55.97 Aligned_cols=48 Identities=29% Similarity=0.508 Sum_probs=39.1
Q ss_pred ccCceeccccccCCCcEEcc-CCCcchHHhHHHHHhhhhHhcccCCCCCCCCcccccccc
Q 021263 229 EYDLTCAVCLDLVFNPYALS-CGHLFCKLCACSAASVMVFEGLKSASPDSKCPICREIIH 287 (315)
Q Consensus 229 ~~~l~C~IC~~~~~~Pv~l~-CgH~FC~~Ci~~~~~~~~~~~~~~~~~~~~CP~Cr~~v~ 287 (315)
.+.-.||||+....+|..+. -|-.||..||..+.. ....||+-..+..
T Consensus 298 ~~~~~CpvClk~r~Nptvl~vSGyVfCY~Ci~~Yv~-----------~~~~CPVT~~p~~ 346 (357)
T KOG0826|consen 298 PDREVCPVCLKKRQNPTVLEVSGYVFCYPCIFSYVV-----------NYGHCPVTGYPAS 346 (357)
T ss_pred CccccChhHHhccCCCceEEecceEEeHHHHHHHHH-----------hcCCCCccCCcch
Confidence 46688999999999998765 699999999988854 6778997655544
No 73
>KOG4185 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.65 E-value=0.014 Score=54.06 Aligned_cols=62 Identities=26% Similarity=0.557 Sum_probs=45.1
Q ss_pred CceeccccccCC------CcEEccCCCcchHHhHHHHHhhhhHhcccCCCCCCCCccccccccC--CCC-----cHHHHH
Q 021263 231 DLTCAVCLDLVF------NPYALSCGHLFCKLCACSAASVMVFEGLKSASPDSKCPICREIIHI--SSI-----GAGWQL 297 (315)
Q Consensus 231 ~l~C~IC~~~~~------~Pv~l~CgH~FC~~Ci~~~~~~~~~~~~~~~~~~~~CP~Cr~~v~~--~~~-----n~~l~~ 297 (315)
.+.|-||.+.+. .|..+.|||++|..|+.+... .....||.||.+... ..+ |..+..
T Consensus 3 ~~~c~~c~~~~s~~~~~~~p~~l~c~h~~c~~c~~~l~~----------~~~i~cpfcR~~~~~~~~~~~~l~kNf~ll~ 72 (296)
T KOG4185|consen 3 FPECEICNEDYSSEDGDHIPRVLKCGHTICQNCASKLLG----------NSRILCPFCRETTEIPDGDVKSLQKNFALLQ 72 (296)
T ss_pred CCceeecCccccccCcccCCcccccCceehHhHHHHHhc----------CceeeccCCCCcccCCchhHhhhhhhHHHHH
Confidence 467888887665 467788999999999987643 356778999999532 222 777766
Q ss_pred HHHHH
Q 021263 298 GCKET 302 (315)
Q Consensus 298 lv~~~ 302 (315)
.+...
T Consensus 73 ~~~~~ 77 (296)
T KOG4185|consen 73 AIEHM 77 (296)
T ss_pred HHHHH
Confidence 66654
No 74
>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=95.55 E-value=0.0038 Score=64.04 Aligned_cols=48 Identities=29% Similarity=0.761 Sum_probs=38.6
Q ss_pred ceeccccccCCCcEEccCCCcchHHhHHHHHhhhhHhcccCCCCCCCCccccccccCC
Q 021263 232 LTCAVCLDLVFNPYALSCGHLFCKLCACSAASVMVFEGLKSASPDSKCPICREIIHIS 289 (315)
Q Consensus 232 l~C~IC~~~~~~Pv~l~CgH~FC~~Ci~~~~~~~~~~~~~~~~~~~~CP~Cr~~v~~~ 289 (315)
..|++|.+ ...++.+.|||.||..|+...+. ......||.||..+...
T Consensus 455 ~~c~ic~~-~~~~~it~c~h~~c~~c~~~~i~---------~~~~~~~~~cr~~l~~~ 502 (674)
T KOG1001|consen 455 HWCHICCD-LDSFFITRCGHDFCVECLKKSIQ---------QSENAPCPLCRNVLKEK 502 (674)
T ss_pred cccccccc-cccceeecccchHHHHHHHhccc---------cccCCCCcHHHHHHHHH
Confidence 89999999 77888899999999999987753 12334899999875544
No 75
>COG5194 APC11 Component of SCF ubiquitin ligase and anaphase-promoting complex [Posttranslational modification, protein turnover, chaperones / Cell division and chromosome partitioning]
Probab=94.90 E-value=0.026 Score=41.24 Aligned_cols=45 Identities=24% Similarity=0.432 Sum_probs=32.7
Q ss_pred ceeccccccCC----CcEEc-cCCCcchHHhHHHHHhhhhHhcccCCCCCCCCcccccccc
Q 021263 232 LTCAVCLDLVF----NPYAL-SCGHLFCKLCACSAASVMVFEGLKSASPDSKCPICREIIH 287 (315)
Q Consensus 232 l~C~IC~~~~~----~Pv~l-~CgH~FC~~Ci~~~~~~~~~~~~~~~~~~~~CP~Cr~~v~ 287 (315)
..||-|+.-.. =|+.- .|.|.|...||.+|++ ....||++|+...
T Consensus 32 ~~C~eCq~~~~~~~eC~v~wG~CnHaFH~HCI~rWL~-----------Tk~~CPld~q~w~ 81 (88)
T COG5194 32 GTCPECQFGMTPGDECPVVWGVCNHAFHDHCIYRWLD-----------TKGVCPLDRQTWV 81 (88)
T ss_pred CcCcccccCCCCCCcceEEEEecchHHHHHHHHHHHh-----------hCCCCCCCCceeE
Confidence 45666665332 12343 5999999999999975 5778999998854
No 76
>PF04641 Rtf2: Rtf2 RING-finger
Probab=94.78 E-value=0.048 Score=49.70 Aligned_cols=51 Identities=24% Similarity=0.421 Sum_probs=38.7
Q ss_pred ccCceeccccccCCCc---EEc-cCCCcchHHhHHHHHhhhhHhcccCCCCCCCCccccccccCCCC
Q 021263 229 EYDLTCAVCLDLVFNP---YAL-SCGHLFCKLCACSAASVMVFEGLKSASPDSKCPICREIIHISSI 291 (315)
Q Consensus 229 ~~~l~C~IC~~~~~~P---v~l-~CgH~FC~~Ci~~~~~~~~~~~~~~~~~~~~CP~Cr~~v~~~~~ 291 (315)
...+.|||....|..- +.+ +|||.|+..++... .....||+|..++...++
T Consensus 111 ~~~~~CPvt~~~~~~~~~fv~l~~cG~V~s~~alke~------------k~~~~Cp~c~~~f~~~Di 165 (260)
T PF04641_consen 111 EGRFICPVTGKEFNGKHKFVYLRPCGCVFSEKALKEL------------KKSKKCPVCGKPFTEEDI 165 (260)
T ss_pred CceeECCCCCcccCCceeEEEEcCCCCEeeHHHHHhh------------cccccccccCCccccCCE
Confidence 4579999999888432 333 89999999999765 124569999999876653
No 77
>KOG1493 consensus Anaphase-promoting complex (APC), subunit 11 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=94.52 E-value=0.017 Score=41.80 Aligned_cols=49 Identities=24% Similarity=0.523 Sum_probs=33.4
Q ss_pred CceeccccccCCC-cEEc-cCCCcchHHhHHHHHhhhhHhcccCCCCCCCCcccccccc
Q 021263 231 DLTCAVCLDLVFN-PYAL-SCGHLFCKLCACSAASVMVFEGLKSASPDSKCPICREIIH 287 (315)
Q Consensus 231 ~l~C~IC~~~~~~-Pv~l-~CgH~FC~~Ci~~~~~~~~~~~~~~~~~~~~CP~Cr~~v~ 287 (315)
+-.||-|.-.=.| |..+ -|.|.|...||.+|.. .......||.||+...
T Consensus 31 dg~Cp~Ck~PgDdCPLv~G~C~h~fh~hCI~~wl~--------~~tsq~~CPmcRq~~~ 81 (84)
T KOG1493|consen 31 DGCCPDCKLPGDDCPLVWGYCLHAFHAHCILKWLN--------TPTSQGQCPMCRQTWQ 81 (84)
T ss_pred CCcCCCCcCCCCCCccHHHHHHHHHHHHHHHHHhc--------CccccccCCcchheeE
Confidence 4456666543222 4444 5999999999999964 2245588999998754
No 78
>PF07800 DUF1644: Protein of unknown function (DUF1644); InterPro: IPR012866 This family consists of sequences found in a number of hypothetical plant proteins of unknown function. The region of interest contains nine highly conserved cysteine residues and is approximately 160 amino acids in length, which probably represent a zinc-binding domain.
Probab=94.47 E-value=0.043 Score=45.56 Aligned_cols=62 Identities=21% Similarity=0.476 Sum_probs=38.0
Q ss_pred cCceeccccccCCCcEEccCC------------Ccc-hHHhHHHHHhhhhHhccc--------------------CCCCC
Q 021263 230 YDLTCAVCLDLVFNPYALSCG------------HLF-CKLCACSAASVMVFEGLK--------------------SASPD 276 (315)
Q Consensus 230 ~~l~C~IC~~~~~~Pv~l~Cg------------H~F-C~~Ci~~~~~~~~~~~~~--------------------~~~~~ 276 (315)
++.+||||++...++|.|-|. .++ ...|+.++-+........ .....
T Consensus 1 ed~~CpICme~PHNAVLLlCSS~~kgcRpymc~Ts~rhSNCLdqfkka~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (162)
T PF07800_consen 1 EDVTCPICMEHPHNAVLLLCSSHEKGCRPYMCDTSYRHSNCLDQFKKAYGKSSSSSSQSSSSAPSDSSSSESSESQEQPE 80 (162)
T ss_pred CCccCceeccCCCceEEEEeccccCCccccccCCccchhHHHHHHHHHhcCCCCccccccccCcCCCccccccccccccc
Confidence 367899999999999987442 222 245777654321111100 01135
Q ss_pred CCCccccccccCCCC
Q 021263 277 SKCPICREIIHISSI 291 (315)
Q Consensus 277 ~~CP~Cr~~v~~~~~ 291 (315)
..||+||..|.-..+
T Consensus 81 L~CPLCRG~V~GWtv 95 (162)
T PF07800_consen 81 LACPLCRGEVKGWTV 95 (162)
T ss_pred ccCccccCceeceEE
Confidence 789999999876644
No 79
>COG5236 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=94.36 E-value=0.027 Score=52.30 Aligned_cols=49 Identities=27% Similarity=0.657 Sum_probs=38.3
Q ss_pred CccCceeccccccCCCcEEccCCCcchHHhHHHHHhhhhHhcccCCCCCCCCcccccc
Q 021263 228 LEYDLTCAVCLDLVFNPYALSCGHLFCKLCACSAASVMVFEGLKSASPDSKCPICREI 285 (315)
Q Consensus 228 l~~~l~C~IC~~~~~~Pv~l~CgH~FC~~Ci~~~~~~~~~~~~~~~~~~~~CP~Cr~~ 285 (315)
-++...|.||-+-+.--..+||+|..|.-|..+.- ..-....||+||+.
T Consensus 58 DEen~~C~ICA~~~TYs~~~PC~H~~CH~Ca~RlR---------ALY~~K~C~~CrTE 106 (493)
T COG5236 58 DEENMNCQICAGSTTYSARYPCGHQICHACAVRLR---------ALYMQKGCPLCRTE 106 (493)
T ss_pred ccccceeEEecCCceEEEeccCCchHHHHHHHHHH---------HHHhccCCCccccc
Confidence 35678999999987766678999999999985531 11356789999987
No 80
>KOG3161 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=94.19 E-value=0.016 Score=57.81 Aligned_cols=34 Identities=35% Similarity=0.815 Sum_probs=28.3
Q ss_pred CccCceeccccccCC----CcEEccCCCcchHHhHHHH
Q 021263 228 LEYDLTCAVCLDLVF----NPYALSCGHLFCKLCACSA 261 (315)
Q Consensus 228 l~~~l~C~IC~~~~~----~Pv~l~CgH~FC~~Ci~~~ 261 (315)
+.+.+.|+||...|. .|+.+-|||+.|..|++..
T Consensus 8 w~~~l~c~ic~n~f~~~~~~Pvsl~cghtic~~c~~~l 45 (861)
T KOG3161|consen 8 WVLLLLCDICLNLFVVQRLEPVSLQCGHTICGHCVQLL 45 (861)
T ss_pred hHHHhhchHHHHHHHHHhcCcccccccchHHHHHHHhH
Confidence 346789999977665 6888999999999999775
No 81
>KOG1814 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=94.10 E-value=0.057 Score=51.35 Aligned_cols=54 Identities=26% Similarity=0.522 Sum_probs=37.3
Q ss_pred ccCceeccccccCCC--c-EEccCCCcchHHhHHHHHhhhhHhcccCCCCCCCCcccccc
Q 021263 229 EYDLTCAVCLDLVFN--P-YALSCGHLFCKLCACSAASVMVFEGLKSASPDSKCPICREI 285 (315)
Q Consensus 229 ~~~l~C~IC~~~~~~--P-v~l~CgH~FC~~Ci~~~~~~~~~~~~~~~~~~~~CP~Cr~~ 285 (315)
...+.|.||.+..-- - +.+||+|.||..|+..++..+.-.+ .....+||-+.-+
T Consensus 182 ~slf~C~ICf~e~~G~~c~~~lpC~Hv~Ck~C~kdY~~~~i~eg---~v~~l~Cp~~~C~ 238 (445)
T KOG1814|consen 182 NSLFDCCICFEEQMGQHCFKFLPCSHVFCKSCLKDYFTIQIQEG---QVSCLKCPDPKCG 238 (445)
T ss_pred hhcccceeeehhhcCcceeeecccchHHHHHHHHHHHHHhhhcc---eeeeecCCCCCCc
Confidence 357899999985442 2 3479999999999999986433333 2355678765433
No 82
>KOG2817 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=94.04 E-value=0.038 Score=52.29 Aligned_cols=51 Identities=25% Similarity=0.440 Sum_probs=36.8
Q ss_pred CccCceeccccccCC---CcEEccCCCcchHHhHHHHHhhhhHhcccCCCCCCCCccccccc
Q 021263 228 LEYDLTCAVCLDLVF---NPYALSCGHLFCKLCACSAASVMVFEGLKSASPDSKCPICREII 286 (315)
Q Consensus 228 l~~~l~C~IC~~~~~---~Pv~l~CgH~FC~~Ci~~~~~~~~~~~~~~~~~~~~CP~Cr~~v 286 (315)
...-+.|||=.+.-. .|+.+.|||..|..-+.+... +....++||.|-...
T Consensus 331 fHSvF~CPVlKeqtsdeNPPm~L~CGHVISkdAlnrLS~--------ng~~sfKCPYCP~e~ 384 (394)
T KOG2817|consen 331 FHSVFICPVLKEQTSDENPPMMLICGHVISKDALNRLSK--------NGSQSFKCPYCPVEQ 384 (394)
T ss_pred ccceeecccchhhccCCCCCeeeeccceecHHHHHHHhh--------CCCeeeeCCCCCccc
Confidence 345689999766443 468899999999999987643 122358999995543
No 83
>KOG3970 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=93.85 E-value=0.11 Score=45.46 Aligned_cols=56 Identities=25% Similarity=0.494 Sum_probs=40.1
Q ss_pred CceeccccccCC--CcEEccCCCcchHHhHHHHHhhhhHhcccCCCCCCCCccccccccCC
Q 021263 231 DLTCAVCLDLVF--NPYALSCGHLFCKLCACSAASVMVFEGLKSASPDSKCPICREIIHIS 289 (315)
Q Consensus 231 ~l~C~IC~~~~~--~Pv~l~CgH~FC~~Ci~~~~~~~~~~~~~~~~~~~~CP~Cr~~v~~~ 289 (315)
.--|.+|...+. |.+.+-|-|.|.+.|+..+... + +......+..||.|..++...
T Consensus 50 ~pNC~LC~t~La~gdt~RLvCyhlfHW~ClneraA~--l-PanTAPaGyqCP~Cs~eiFPp 107 (299)
T KOG3970|consen 50 NPNCRLCNTPLASGDTTRLVCYHLFHWKCLNERAAN--L-PANTAPAGYQCPCCSQEIFPP 107 (299)
T ss_pred CCCCceeCCccccCcceeehhhhhHHHHHhhHHHhh--C-CCcCCCCcccCCCCCCccCCC
Confidence 355889988766 5567899999999999988531 1 111234568999999887654
No 84
>PF05290 Baculo_IE-1: Baculovirus immediate-early protein (IE-0); InterPro: IPR007954 This entry contains the Baculovirus immediate-early protein IE-0.
Probab=93.66 E-value=0.06 Score=43.37 Aligned_cols=52 Identities=23% Similarity=0.519 Sum_probs=42.6
Q ss_pred CceeccccccCCCcEEc----cCCCcchHHhHHHHHhhhhHhcccCCCCCCCCccccccccCCC
Q 021263 231 DLTCAVCLDLVFNPYAL----SCGHLFCKLCACSAASVMVFEGLKSASPDSKCPICREIIHISS 290 (315)
Q Consensus 231 ~l~C~IC~~~~~~Pv~l----~CgH~FC~~Ci~~~~~~~~~~~~~~~~~~~~CP~Cr~~v~~~~ 290 (315)
.++|-||.+...++..| -||-..|..|-...|+ -....+.||+|++++..+.
T Consensus 80 lYeCnIC~etS~ee~FLKPneCCgY~iCn~Cya~LWK--------~~~~ypvCPvCkTSFKss~ 135 (140)
T PF05290_consen 80 LYECNICKETSAEERFLKPNECCGYSICNACYANLWK--------FCNLYPVCPVCKTSFKSSS 135 (140)
T ss_pred ceeccCcccccchhhcCCcccccchHHHHHHHHHHHH--------HcccCCCCCcccccccccc
Confidence 58999999999999876 3999999999888775 1246689999999877653
No 85
>KOG1812 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=92.19 E-value=0.076 Score=51.14 Aligned_cols=71 Identities=23% Similarity=0.439 Sum_probs=42.2
Q ss_pred cCceecccc-ccCCCcE---EccCCCcchHHhHHHHHhhhhHhcccCCCCCCCCcc--ccccccCCCC----cHHHHHHH
Q 021263 230 YDLTCAVCL-DLVFNPY---ALSCGHLFCKLCACSAASVMVFEGLKSASPDSKCPI--CREIIHISSI----GAGWQLGC 299 (315)
Q Consensus 230 ~~l~C~IC~-~~~~~Pv---~l~CgH~FC~~Ci~~~~~~~~~~~~~~~~~~~~CP~--Cr~~v~~~~~----n~~l~~lv 299 (315)
...+|.||. +...... ...|+|.||..|+.+++... ...+...+||. |...+..... ...++++.
T Consensus 145 ~~~~C~iC~~e~~~~~~~f~~~~C~H~fC~~C~k~~iev~-----~~~~~~~~C~~~~C~~~l~~~~c~~llt~kl~e~~ 219 (384)
T KOG1812|consen 145 PKEECGICFVEDPEAEDMFSVLKCGHRFCKDCVKQHIEVK-----LLSGTVIRCPHDGCESRLTLESCRKLLTPKLREMW 219 (384)
T ss_pred ccccCccCccccccHhhhHHHhcccchhhhHHhHHHhhhh-----hccCCCccCCCCCCCccCCHHHHhhhcCHHHHHHH
Confidence 367899999 4333222 24699999999999886522 23356778876 3333443333 33444555
Q ss_pred HHHHHh
Q 021263 300 KETWQE 305 (315)
Q Consensus 300 ~~~~~e 305 (315)
+.+..+
T Consensus 220 e~~~~e 225 (384)
T KOG1812|consen 220 EQRLKE 225 (384)
T ss_pred HHHHHH
Confidence 544443
No 86
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.02 E-value=0.13 Score=53.00 Aligned_cols=41 Identities=27% Similarity=0.694 Sum_probs=35.3
Q ss_pred cCceeccccccCCCcEE-ccCCCcchHHhHHHHHhhhhHhcccCCCCCCCCccccc
Q 021263 230 YDLTCAVCLDLVFNPYA-LSCGHLFCKLCACSAASVMVFEGLKSASPDSKCPICRE 284 (315)
Q Consensus 230 ~~l~C~IC~~~~~~Pv~-l~CgH~FC~~Ci~~~~~~~~~~~~~~~~~~~~CP~Cr~ 284 (315)
..-.|..|...+.-|+. ..|||+|...|+. .....||.|+.
T Consensus 839 q~skCs~C~~~LdlP~VhF~CgHsyHqhC~e--------------~~~~~CP~C~~ 880 (933)
T KOG2114|consen 839 QVSKCSACEGTLDLPFVHFLCGHSYHQHCLE--------------DKEDKCPKCLP 880 (933)
T ss_pred eeeeecccCCccccceeeeecccHHHHHhhc--------------cCcccCCccch
Confidence 45789999999999976 6999999999984 25788999977
No 87
>KOG4362 consensus Transcriptional regulator BRCA1 [Replication, recombination and repair; Transcription]
Probab=91.72 E-value=0.073 Score=54.07 Aligned_cols=54 Identities=31% Similarity=0.671 Sum_probs=42.7
Q ss_pred cCceeccccccCCCcEEccCCCcchHHhHHHHHhhhhHhcccCCCCCCCCccccccccCCCC
Q 021263 230 YDLTCAVCLDLVFNPYALSCGHLFCKLCACSAASVMVFEGLKSASPDSKCPICREIIHISSI 291 (315)
Q Consensus 230 ~~l~C~IC~~~~~~Pv~l~CgH~FC~~Ci~~~~~~~~~~~~~~~~~~~~CP~Cr~~v~~~~~ 291 (315)
-.++||||...+.+|+.+.|-|.||..|+...+. .......||+|+..+.....
T Consensus 20 k~lEc~ic~~~~~~p~~~kc~~~~l~~~~n~~f~--------~~~~~~~~~lc~~~~eK~s~ 73 (684)
T KOG4362|consen 20 KILECPICLEHVKEPSLLKCDHIFLKFCLNKLFE--------SKKGPKQCALCKSDIEKRSL 73 (684)
T ss_pred hhccCCceeEEeeccchhhhhHHHHhhhhhceee--------ccCccccchhhhhhhhhhhc
Confidence 4689999999999999999999999999866542 11236789999877665543
No 88
>COG5220 TFB3 Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit TFB3 [Cell division and chromosome partitioning / Transcription / DNA replication, recombination, and repair]
Probab=91.63 E-value=0.071 Score=47.14 Aligned_cols=46 Identities=35% Similarity=0.717 Sum_probs=34.8
Q ss_pred cCceeccccc-cCCCc-E-Ec--c-CCCcchHHhHHHHHhhhhHhcccCCCCCCCCc--ccccc
Q 021263 230 YDLTCAVCLD-LVFNP-Y-AL--S-CGHLFCKLCACSAASVMVFEGLKSASPDSKCP--ICREI 285 (315)
Q Consensus 230 ~~l~C~IC~~-~~~~P-v-~l--~-CgH~FC~~Ci~~~~~~~~~~~~~~~~~~~~CP--~Cr~~ 285 (315)
.+-.||||.. .+-+| + .+ | |-|..|-+|+.+.++ .++..|| .|...
T Consensus 9 ~d~~CPvCksDrYLnPdik~linPECyHrmCESCvdRIFs----------~GpAqCP~~gC~kI 62 (314)
T COG5220 9 EDRRCPVCKSDRYLNPDIKILINPECYHRMCESCVDRIFS----------RGPAQCPYKGCGKI 62 (314)
T ss_pred hcccCCccccccccCCCeEEEECHHHHHHHHHHHHHHHhc----------CCCCCCCCccHHHH
Confidence 3568999996 35566 2 22 5 999999999999876 5778899 77554
No 89
>PF10367 Vps39_2: Vacuolar sorting protein 39 domain 2; InterPro: IPR019453 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised In Vps39 this domain is involved in localisation and in mediating the interactions with Vps11 [].
Probab=91.59 E-value=0.068 Score=41.38 Aligned_cols=31 Identities=26% Similarity=0.495 Sum_probs=25.5
Q ss_pred ccCceeccccccCCCcEE--ccCCCcchHHhHH
Q 021263 229 EYDLTCAVCLDLVFNPYA--LSCGHLFCKLCAC 259 (315)
Q Consensus 229 ~~~l~C~IC~~~~~~Pv~--l~CgH~FC~~Ci~ 259 (315)
.+.-.|++|...+.+++. .||||.|+..|+.
T Consensus 76 ~~~~~C~vC~k~l~~~~f~~~p~~~v~H~~C~~ 108 (109)
T PF10367_consen 76 TESTKCSVCGKPLGNSVFVVFPCGHVVHYSCIK 108 (109)
T ss_pred CCCCCccCcCCcCCCceEEEeCCCeEEeccccc
Confidence 456779999998887654 5999999999974
No 90
>KOG2932 consensus E3 ubiquitin ligase involved in ubiquitination of E-cadherin complex [Posttranslational modification, protein turnover, chaperones]
Probab=91.24 E-value=0.089 Score=48.24 Aligned_cols=44 Identities=30% Similarity=0.674 Sum_probs=29.6
Q ss_pred ceeccccccCC-CcEEccCCCcchHHhHHHHHhhhhHhcccCCCCCCCCccccccccC
Q 021263 232 LTCAVCLDLVF-NPYALSCGHLFCKLCACSAASVMVFEGLKSASPDSKCPICREIIHI 288 (315)
Q Consensus 232 l~C~IC~~~~~-~Pv~l~CgH~FC~~Ci~~~~~~~~~~~~~~~~~~~~CP~Cr~~v~~ 288 (315)
-.|.-|..-+. --..++|.|.||.+|... .....||.|-..|..
T Consensus 91 HfCd~Cd~PI~IYGRmIPCkHvFCl~CAr~-------------~~dK~Cp~C~d~Vqr 135 (389)
T KOG2932|consen 91 HFCDRCDFPIAIYGRMIPCKHVFCLECARS-------------DSDKICPLCDDRVQR 135 (389)
T ss_pred EeecccCCcceeeecccccchhhhhhhhhc-------------CccccCcCcccHHHH
Confidence 45667765322 223469999999999742 246789999766543
No 91
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=91.11 E-value=0.088 Score=49.74 Aligned_cols=47 Identities=28% Similarity=0.646 Sum_probs=36.1
Q ss_pred cCceeccccccCC-Cc---EEccCCCcchHHhHHHHHhhhhHhcccCCCCCCCCcccccc
Q 021263 230 YDLTCAVCLDLVF-NP---YALSCGHLFCKLCACSAASVMVFEGLKSASPDSKCPICREI 285 (315)
Q Consensus 230 ~~l~C~IC~~~~~-~P---v~l~CgH~FC~~Ci~~~~~~~~~~~~~~~~~~~~CP~Cr~~ 285 (315)
..+-|-.|.+.+- .| -.+||.|.|...|+..++. .....+||.||..
T Consensus 364 ~~L~Cg~CGe~~Glk~e~LqALpCsHIfH~rCl~e~L~---------~n~~rsCP~Crkl 414 (518)
T KOG1941|consen 364 TELYCGLCGESIGLKNERLQALPCSHIFHLRCLQEILE---------NNGTRSCPNCRKL 414 (518)
T ss_pred HhhhhhhhhhhhcCCcccccccchhHHHHHHHHHHHHH---------hCCCCCCccHHHH
Confidence 4588999998654 22 2379999999999998863 2477899999943
No 92
>PF02891 zf-MIZ: MIZ/SP-RING zinc finger; InterPro: IPR004181 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents MIZ-type zinc finger domains. Miz1 (Msx-interacting-zinc finger) is a zinc finger-containing protein with homology to the yeast protein, Nfi-1. Miz1 is a sequence specific DNA binding protein that can function as a positive-acting transcription factor. Miz1 binds to the homeobox protein Msx2, enhancing the specific DNA-binding ability of Msx2 []. Other proteins containing this domain include the human pias family (protein inhibitor of activated STAT protein). More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 3I2D_A.
Probab=90.88 E-value=0.2 Score=33.63 Aligned_cols=48 Identities=29% Similarity=0.544 Sum_probs=22.8
Q ss_pred CceeccccccCCCcEE-ccCCCcchHHhHHHHHhhhhHhcccCCCCCCCCcccccc
Q 021263 231 DLTCAVCLDLVFNPYA-LSCGHLFCKLCACSAASVMVFEGLKSASPDSKCPICREI 285 (315)
Q Consensus 231 ~l~C~IC~~~~~~Pv~-l~CgH~FC~~Ci~~~~~~~~~~~~~~~~~~~~CP~Cr~~ 285 (315)
.+.||+....+..|+. ..|.|.-|-+- ..++.. .. ......||+|.++
T Consensus 2 sL~CPls~~~i~~P~Rg~~C~H~~CFDl-~~fl~~---~~---~~~~W~CPiC~~~ 50 (50)
T PF02891_consen 2 SLRCPLSFQRIRIPVRGKNCKHLQCFDL-ESFLES---NQ---RTPKWKCPICNKP 50 (50)
T ss_dssp ESB-TTTSSB-SSEEEETT--SS--EEH-HHHHHH---HH---HS---B-TTT---
T ss_pred eeeCCCCCCEEEeCccCCcCcccceECH-HHHHHH---hh---ccCCeECcCCcCc
Confidence 3789999999999998 47999877543 222221 10 1245899999764
No 93
>KOG1428 consensus Inhibitor of type V adenylyl cyclases/Neuronal presynaptic protein Highwire/PAM/RPM-1 [Signal transduction mechanisms]
Probab=89.73 E-value=0.26 Score=53.68 Aligned_cols=60 Identities=25% Similarity=0.535 Sum_probs=39.8
Q ss_pred ccCceecccccc-C-CCc-EEccCCCcchHHhHHHHHhhhhHhcccCCCCCCCCccccccccCC
Q 021263 229 EYDLTCAVCLDL-V-FNP-YALSCGHLFCKLCACSAASVMVFEGLKSASPDSKCPICREIIHIS 289 (315)
Q Consensus 229 ~~~l~C~IC~~~-~-~~P-v~l~CgH~FC~~Ci~~~~~~~~~~~~~~~~~~~~CP~Cr~~v~~~ 289 (315)
+.+..|-||..- + ..| +.+.|+|.|...|..+.+. ..|.+++---+-..||+|..++...
T Consensus 3484 D~DDmCmICFTE~L~AAP~IqL~C~HiFHlqC~R~vLE-~RW~GPRItF~FisCPiC~n~InH~ 3546 (3738)
T KOG1428|consen 3484 DADDMCMICFTEALSAAPAIQLDCSHIFHLQCCRRVLE-NRWLGPRITFGFISCPICKNKINHI 3546 (3738)
T ss_pred ccCceEEEEehhhhCCCcceecCCccchhHHHHHHHHH-hcccCCeeEEeeeecccccchhhhH
Confidence 456789999852 2 344 5689999999999977653 1122222222447899998886654
No 94
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=89.67 E-value=0.24 Score=46.05 Aligned_cols=51 Identities=22% Similarity=0.667 Sum_probs=34.8
Q ss_pred cCceeccccccCC--CcEEc--cCCCcchHHhHHHHHhhhhHhcccCCCCCCCCccccccccCCCC
Q 021263 230 YDLTCAVCLDLVF--NPYAL--SCGHLFCKLCACSAASVMVFEGLKSASPDSKCPICREIIHISSI 291 (315)
Q Consensus 230 ~~l~C~IC~~~~~--~Pv~l--~CgH~FC~~Ci~~~~~~~~~~~~~~~~~~~~CP~Cr~~v~~~~~ 291 (315)
+++ ||+|++.+. |--.. +||-..|.-|....-. .-.++||-||..+....+
T Consensus 14 ed~-cplcie~mditdknf~pc~cgy~ic~fc~~~irq----------~lngrcpacrr~y~denv 68 (480)
T COG5175 14 EDY-CPLCIEPMDITDKNFFPCPCGYQICQFCYNNIRQ----------NLNGRCPACRRKYDDENV 68 (480)
T ss_pred ccc-CcccccccccccCCcccCCcccHHHHHHHHHHHh----------hccCCChHhhhhccccce
Confidence 444 999998654 32222 6888889999754411 246789999988776643
No 95
>KOG1952 consensus Transcription factor NF-X1, contains NFX-type Zn2+-binding and R3H domains [Transcription]
Probab=89.25 E-value=0.3 Score=50.56 Aligned_cols=53 Identities=25% Similarity=0.526 Sum_probs=39.6
Q ss_pred ccCceeccccccCC--CcEE--ccCCCcchHHhHHHHHhhhhHhcccCCCCCCCCcccccc
Q 021263 229 EYDLTCAVCLDLVF--NPYA--LSCGHLFCKLCACSAASVMVFEGLKSASPDSKCPICREI 285 (315)
Q Consensus 229 ~~~l~C~IC~~~~~--~Pv~--l~CgH~FC~~Ci~~~~~~~~~~~~~~~~~~~~CP~Cr~~ 285 (315)
...+.|.||.+.+. .|+- ..|-|.|...||.+|.+... +.....++||.|+..
T Consensus 189 ~~~yeCmIC~e~I~~t~~~WSC~sCYhVFHl~CI~~WArs~e----k~~~~~WrCP~Cqsv 245 (950)
T KOG1952|consen 189 NRKYECMICTERIKRTAPVWSCKSCYHVFHLNCIKKWARSSE----KTGQDGWRCPACQSV 245 (950)
T ss_pred cCceEEEEeeeeccccCCceecchhhhhhhHHHHHHHHHHhh----hccCccccCCcccch
Confidence 45699999999765 5543 36999999999999987411 122467999999844
No 96
>PHA03096 p28-like protein; Provisional
Probab=88.35 E-value=0.23 Score=45.81 Aligned_cols=50 Identities=14% Similarity=0.202 Sum_probs=32.1
Q ss_pred ceeccccccCC-Cc-------EEccCCCcchHHhHHHHHhhhhHhcccCCCCCCCCccccccc
Q 021263 232 LTCAVCLDLVF-NP-------YALSCGHLFCKLCACSAASVMVFEGLKSASPDSKCPICREII 286 (315)
Q Consensus 232 l~C~IC~~~~~-~P-------v~l~CgH~FC~~Ci~~~~~~~~~~~~~~~~~~~~CP~Cr~~v 286 (315)
-.|.||++... .| +...|-|.||..|+..|-.. . ........||.|+..+
T Consensus 179 k~c~ic~e~~~~k~~~~~~fgil~~c~h~fc~~ci~~wr~~----~-~~~e~~~~c~~~~~~~ 236 (284)
T PHA03096 179 KICGICLENIKAKYIIKKYYGILSEIKHEFNIFCIKIWMTE----S-LYKETEPENRRLNTVI 236 (284)
T ss_pred hhcccchhhhhhhccccccccccccCCcHHHHHHHHHHHHh----h-hhcccCccccchhhHH
Confidence 67999998544 22 12269999999999988541 1 1123445666666654
No 97
>KOG1100 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=88.28 E-value=0.24 Score=43.55 Aligned_cols=40 Identities=30% Similarity=0.691 Sum_probs=30.7
Q ss_pred eccccccCCCcEEccCCC-cchHHhHHHHHhhhhHhcccCCCCCCCCccccccccC
Q 021263 234 CAVCLDLVFNPYALSCGH-LFCKLCACSAASVMVFEGLKSASPDSKCPICREIIHI 288 (315)
Q Consensus 234 C~IC~~~~~~Pv~l~CgH-~FC~~Ci~~~~~~~~~~~~~~~~~~~~CP~Cr~~v~~ 288 (315)
|-.|.+.-..-+.+||-| .+|..|- .+...||+|+.+...
T Consensus 161 Cr~C~~~~~~VlllPCrHl~lC~~C~---------------~~~~~CPiC~~~~~s 201 (207)
T KOG1100|consen 161 CRKCGEREATVLLLPCRHLCLCGICD---------------ESLRICPICRSPKTS 201 (207)
T ss_pred ceecCcCCceEEeecccceEeccccc---------------ccCccCCCCcChhhc
Confidence 999998766655679998 7899895 125679999887544
No 98
>KOG2930 consensus SCF ubiquitin ligase, Rbx1 component [Posttranslational modification, protein turnover, chaperones]
Probab=87.98 E-value=0.33 Score=37.35 Aligned_cols=27 Identities=22% Similarity=0.477 Sum_probs=23.6
Q ss_pred cCCCcchHHhHHHHHhhhhHhcccCCCCCCCCcccccc
Q 021263 248 SCGHLFCKLCACSAASVMVFEGLKSASPDSKCPICREI 285 (315)
Q Consensus 248 ~CgH~FC~~Ci~~~~~~~~~~~~~~~~~~~~CP~Cr~~ 285 (315)
.|.|.|...||.+|++ ....||+|..+
T Consensus 80 ~CNHaFH~hCisrWlk-----------tr~vCPLdn~e 106 (114)
T KOG2930|consen 80 VCNHAFHFHCISRWLK-----------TRNVCPLDNKE 106 (114)
T ss_pred ecchHHHHHHHHHHHh-----------hcCcCCCcCcc
Confidence 5999999999999976 67889999765
No 99
>KOG3039 consensus Uncharacterized conserved protein [Function unknown]
Probab=87.97 E-value=0.43 Score=42.55 Aligned_cols=35 Identities=17% Similarity=0.159 Sum_probs=30.9
Q ss_pred CccCceeccccccCCCcEEccCCCcchHHhHHHHH
Q 021263 228 LEYDLTCAVCLDLVFNPYALSCGHLFCKLCACSAA 262 (315)
Q Consensus 228 l~~~l~C~IC~~~~~~Pv~l~CgH~FC~~Ci~~~~ 262 (315)
+.+...|++|++.+.+||+++=||.||+.||-+++
T Consensus 40 iK~FdcCsLtLqPc~dPvit~~GylfdrEaILe~i 74 (303)
T KOG3039|consen 40 IKPFDCCSLTLQPCRDPVITPDGYLFDREAILEYI 74 (303)
T ss_pred cCCcceeeeecccccCCccCCCCeeeeHHHHHHHH
Confidence 34667899999999999999999999999997653
No 100
>KOG1940 consensus Zn-finger protein [General function prediction only]
Probab=87.77 E-value=0.24 Score=45.25 Aligned_cols=58 Identities=21% Similarity=0.451 Sum_probs=39.0
Q ss_pred ceeccccccCC----CcEEccCCCcchHHhHHHHHhhhhHhcccCCCCCCCCccccccccCC-CCcHHHHHHHHH
Q 021263 232 LTCAVCLDLVF----NPYALSCGHLFCKLCACSAASVMVFEGLKSASPDSKCPICREIIHIS-SIGAGWQLGCKE 301 (315)
Q Consensus 232 l~C~IC~~~~~----~Pv~l~CgH~FC~~Ci~~~~~~~~~~~~~~~~~~~~CP~Cr~~v~~~-~~n~~l~~lv~~ 301 (315)
.-||||.+.+. .|..++|||.....|....-. .+ ..||+|.. +... .....+..+|..
T Consensus 159 ~ncPic~e~l~~s~~~~~~~~CgH~~h~~cf~e~~~----------~~-y~CP~C~~-~~d~~~~~~~~d~~l~~ 221 (276)
T KOG1940|consen 159 FNCPICKEYLFLSFEDAGVLKCGHYMHSRCFEEMIC----------EG-YTCPICSK-PGDMSHYFRKLDKELAG 221 (276)
T ss_pred CCCchhHHHhccccccCCccCcccchHHHHHHHHhc----------cC-CCCCcccc-hHHHHHHHHHHHHHHhc
Confidence 44999998654 455579999999899876532 34 99999987 3333 234445555543
No 101
>PF08746 zf-RING-like: RING-like domain; InterPro: IPR014857 This is a zinc finger domain that is related to the C3HC4 RING finger domain (IPR001841 from INTERPRO). ; PDB: 3NW0_A 2CT0_A.
Probab=87.37 E-value=0.66 Score=30.04 Aligned_cols=40 Identities=23% Similarity=0.522 Sum_probs=22.7
Q ss_pred eccccccCCCcEE-c--cCCCcchHHhHHHHHhhhhHhcccCCCCCCCCccc
Q 021263 234 CAVCLDLVFNPYA-L--SCGHLFCKLCACSAASVMVFEGLKSASPDSKCPIC 282 (315)
Q Consensus 234 C~IC~~~~~~Pv~-l--~CgH~FC~~Ci~~~~~~~~~~~~~~~~~~~~CP~C 282 (315)
|.+|.++...-+. . .|+-.+...|+..+++ ......||.|
T Consensus 1 C~~C~~iv~~G~~C~~~~C~~r~H~~C~~~y~r---------~~~~~~CP~C 43 (43)
T PF08746_consen 1 CEACKEIVTQGQRCSNRDCNVRLHDDCFKKYFR---------HRSNPKCPNC 43 (43)
T ss_dssp -TTT-SB-SSSEE-SS--S--EE-HHHHHHHTT---------T-SS-B-TTT
T ss_pred CcccchhHeeeccCCCCccCchHHHHHHHHHHh---------cCCCCCCcCC
Confidence 6788888777766 2 4998999999999865 1233379987
No 102
>COG5109 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=87.34 E-value=0.47 Score=43.73 Aligned_cols=54 Identities=26% Similarity=0.506 Sum_probs=38.2
Q ss_pred ccccCccCceeccccccCC---CcEEccCCCcchHHhHHHHHhhhhHhcccCCCCCCCCcccccc
Q 021263 224 SSIKLEYDLTCAVCLDLVF---NPYALSCGHLFCKLCACSAASVMVFEGLKSASPDSKCPICREI 285 (315)
Q Consensus 224 ~~~~l~~~l~C~IC~~~~~---~Pv~l~CgH~FC~~Ci~~~~~~~~~~~~~~~~~~~~CP~Cr~~ 285 (315)
.......-+.|||=.+.-. .|+.+.|||..-..-+.+..+ .....++||.|-..
T Consensus 329 ~~~hfHs~FiCPVlKe~~t~ENpP~ml~CgHVIskeal~~LS~--------nG~~~FKCPYCP~~ 385 (396)
T COG5109 329 KGRHFHSLFICPVLKELCTDENPPVMLECGHVISKEALSVLSQ--------NGVLSFKCPYCPEM 385 (396)
T ss_pred CcccccceeeccccHhhhcccCCCeeeeccceeeHHHHHHHhh--------cCcEEeeCCCCCcc
Confidence 3345567799999776544 478899999999988866532 12346899999443
No 103
>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair]
Probab=85.74 E-value=0.19 Score=54.10 Aligned_cols=50 Identities=32% Similarity=0.694 Sum_probs=40.2
Q ss_pred cccCccCceeccccccCC-CcEEccCCCcchHHhHHHHHhhhhHhcccCCCCCCCCcccccc
Q 021263 225 SIKLEYDLTCAVCLDLVF-NPYALSCGHLFCKLCACSAASVMVFEGLKSASPDSKCPICREI 285 (315)
Q Consensus 225 ~~~l~~~l~C~IC~~~~~-~Pv~l~CgH~FC~~Ci~~~~~~~~~~~~~~~~~~~~CP~Cr~~ 285 (315)
..++.....|+||.+.+. .-.+..|||.+|..|...|.. ....||+|...
T Consensus 1147 ~~~~~~~~~c~ic~dil~~~~~I~~cgh~~c~~c~~~~l~-----------~~s~~~~~ksi 1197 (1394)
T KOG0298|consen 1147 LMNLSGHFVCEICLDILRNQGGIAGCGHEPCCRCDELWLY-----------ASSRCPICKSI 1197 (1394)
T ss_pred HHHhhcccchHHHHHHHHhcCCeeeechhHhhhHHHHHHH-----------HhccCcchhhh
Confidence 445566789999999998 445678999999999998865 56789999744
No 104
>KOG3579 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=82.90 E-value=1.3 Score=40.29 Aligned_cols=34 Identities=24% Similarity=0.608 Sum_probs=28.1
Q ss_pred cCceeccccccCCCcEEccC----CCcchHHhHHHHHh
Q 021263 230 YDLTCAVCLDLVFNPYALSC----GHLFCKLCACSAAS 263 (315)
Q Consensus 230 ~~l~C~IC~~~~~~Pv~l~C----gH~FC~~Ci~~~~~ 263 (315)
..+.|.+|.+-+.|.....| .|.||..|-.+..+
T Consensus 267 apLcCTLC~ERLEDTHFVQCPSVp~HKFCFPCSResIK 304 (352)
T KOG3579|consen 267 APLCCTLCHERLEDTHFVQCPSVPSHKFCFPCSRESIK 304 (352)
T ss_pred CceeehhhhhhhccCceeecCCCcccceecccCHHHHH
Confidence 45999999999999866655 69999999877654
No 105
>PHA02825 LAP/PHD finger-like protein; Provisional
Probab=82.18 E-value=1.9 Score=36.01 Aligned_cols=49 Identities=24% Similarity=0.357 Sum_probs=35.0
Q ss_pred cCceeccccccCCCcEEccCCCcc-----hHHhHHHHHhhhhHhcccCCCCCCCCccccccccC
Q 021263 230 YDLTCAVCLDLVFNPYALSCGHLF-----CKLCACSAASVMVFEGLKSASPDSKCPICREIIHI 288 (315)
Q Consensus 230 ~~l~C~IC~~~~~~Pv~l~CgH~F-----C~~Ci~~~~~~~~~~~~~~~~~~~~CP~Cr~~v~~ 288 (315)
.+-.|-||.+.-. +..-||...- ..+|+.+|.. .++...|+.|.+++..
T Consensus 7 ~~~~CRIC~~~~~-~~~~PC~CkGs~k~VH~sCL~rWi~---------~s~~~~CeiC~~~Y~i 60 (162)
T PHA02825 7 MDKCCWICKDEYD-VVTNYCNCKNENKIVHKECLEEWIN---------TSKNKSCKICNGPYNI 60 (162)
T ss_pred CCCeeEecCCCCC-CccCCcccCCCchHHHHHHHHHHHh---------cCCCCcccccCCeEEE
Confidence 4678999988753 3345665533 8899999965 2467889999988443
No 106
>PF05883 Baculo_RING: Baculovirus U-box/Ring-like domain; InterPro: IPR008573 This family consists of several Baculovirus proteins of around 130 residues in length. The function of this family is unknown, but it appears to be related to the U-box and ring finger domain by profile-profile comparison.
Probab=82.13 E-value=0.6 Score=37.89 Aligned_cols=32 Identities=25% Similarity=0.626 Sum_probs=25.6
Q ss_pred CceeccccccCCC--cEE-ccCC------CcchHHhHHHHH
Q 021263 231 DLTCAVCLDLVFN--PYA-LSCG------HLFCKLCACSAA 262 (315)
Q Consensus 231 ~l~C~IC~~~~~~--Pv~-l~Cg------H~FC~~Ci~~~~ 262 (315)
...|.||.+.+.+ -+. ++|| |.||..|+.+|-
T Consensus 26 ~~EC~IC~~~I~~~~GvV~vt~~g~lnLEkmfc~~C~~rw~ 66 (134)
T PF05883_consen 26 TVECQICFDRIDNNDGVVYVTDGGTLNLEKMFCADCDKRWR 66 (134)
T ss_pred CeeehhhhhhhhcCCCEEEEecCCeehHHHHHHHHHHHHHH
Confidence 6889999998777 544 5666 678999999984
No 107
>KOG1815 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=82.11 E-value=0.95 Score=44.52 Aligned_cols=59 Identities=27% Similarity=0.648 Sum_probs=39.1
Q ss_pred cCceeccccccCCC-cEEccCCCcchHHhHHHHHhhhhHhcccCCCCCCCCc--cccccccCCCC
Q 021263 230 YDLTCAVCLDLVFN-PYALSCGHLFCKLCACSAASVMVFEGLKSASPDSKCP--ICREIIHISSI 291 (315)
Q Consensus 230 ~~l~C~IC~~~~~~-Pv~l~CgH~FC~~Ci~~~~~~~~~~~~~~~~~~~~CP--~Cr~~v~~~~~ 291 (315)
....|.||.+.+.. .+.+.|||.||..|+..+.......+.. ...+|| .|++.+....+
T Consensus 69 ~~~~c~ic~~~~~~~~~~~~c~H~~c~~cw~~yl~~kI~~~~~---~~i~cp~~~C~a~v~~~~i 130 (444)
T KOG1815|consen 69 GDVQCGICVESYDGEIIGLGCGHPFCPPCWTGYLGTKIHEGEE---AKIKCPAHGCPALVGEDTV 130 (444)
T ss_pred ccccCCcccCCCcchhhhcCCCcHHHHHHHHHHhhheeecccc---ccccCCCCCccccCCCcee
Confidence 56889999998875 4557899999999998876422222211 114565 46666666554
No 108
>PF10272 Tmpp129: Putative transmembrane protein precursor; InterPro: IPR018801 This entry consists of proteins conserved from worms to humans. They are purported to be transmembrane protein-precursors but their function is unknown.
Probab=81.72 E-value=0.87 Score=43.27 Aligned_cols=42 Identities=21% Similarity=0.400 Sum_probs=25.6
Q ss_pred CCCcchHHhHHHHHhhhhHhcccC--CCCCCCCccccccccCCC
Q 021263 249 CGHLFCKLCACSAASVMVFEGLKS--ASPDSKCPICREIIHISS 290 (315)
Q Consensus 249 CgH~FC~~Ci~~~~~~~~~~~~~~--~~~~~~CP~Cr~~v~~~~ 290 (315)
|....|.+|+-+|+.+.--+..+. .++...||+||+.+...+
T Consensus 311 CRPmWC~~Cm~kwFasrQd~~~~~~Wl~~~~~CPtCRa~FCilD 354 (358)
T PF10272_consen 311 CRPMWCLECMGKWFASRQDQQHPETWLSGKCPCPTCRAKFCILD 354 (358)
T ss_pred ccchHHHHHHHHHhhhcCCCCChhhhhcCCCCCCCCcccceeee
Confidence 344558899999985221111110 135678999999866543
No 109
>KOG3268 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=80.70 E-value=1.4 Score=37.33 Aligned_cols=60 Identities=17% Similarity=0.417 Sum_probs=35.9
Q ss_pred CceeccccccCCC-----cEE--ccCCCcchHHhHHHHHhhhhHhcccCCCCCCCCccccccccCCC
Q 021263 231 DLTCAVCLDLVFN-----PYA--LSCGHLFCKLCACSAASVMVFEGLKSASPDSKCPICREIIHISS 290 (315)
Q Consensus 231 ~l~C~IC~~~~~~-----Pv~--l~CgH~FC~~Ci~~~~~~~~~~~~~~~~~~~~CP~Cr~~v~~~~ 290 (315)
..-|-||.-+--+ -+. ..||..|..-|+..|++..-.+...-.---+.||.|..++..+.
T Consensus 165 ~~~cgicyayqldGTipDqtCdN~qCgkpFHqiCL~dWLRgilTsRQSFdiiFGeCPYCS~PialKm 231 (234)
T KOG3268|consen 165 LGACGICYAYQLDGTIPDQTCDNIQCGKPFHQICLTDWLRGILTSRQSFDIIFGECPYCSDPIALKM 231 (234)
T ss_pred hhcccceeeeecCCccccccccccccCCcHHHHHHHHHHHHHhhccceeeeeeccCCCCCCcceeec
Confidence 3556666543222 222 36999999999999986321111100112368999999887654
No 110
>KOG4445 consensus Uncharacterized conserved protein, contains RWD domain [Function unknown]
Probab=80.63 E-value=0.65 Score=42.56 Aligned_cols=60 Identities=23% Similarity=0.500 Sum_probs=38.1
Q ss_pred cCceeccccccCCC-c-EE-ccCCCcchHHhHHHHHhhh---------hHhc---ccCCCCCCCCccccccccCC
Q 021263 230 YDLTCAVCLDLVFN-P-YA-LSCGHLFCKLCACSAASVM---------VFEG---LKSASPDSKCPICREIIHIS 289 (315)
Q Consensus 230 ~~l~C~IC~~~~~~-P-v~-l~CgH~FC~~Ci~~~~~~~---------~~~~---~~~~~~~~~CP~Cr~~v~~~ 289 (315)
....|.||+.-|.+ | .+ ++|-|-|...|+.+++.-. ..+. .........||+||..+...
T Consensus 114 p~gqCvICLygfa~~~~ft~T~C~Hy~H~~ClaRyl~~~~~~lrqe~q~~~~~~qh~~~~~eavcpVcre~i~~e 188 (368)
T KOG4445|consen 114 PNGQCVICLYGFASSPAFTVTACDHYMHFACLARYLTECLTGLRQEIQDAQKERQHMKEQVEAVCPVCRERIKIE 188 (368)
T ss_pred CCCceEEEEEeecCCCceeeehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhhhhHhhhhcccc
Confidence 45789999986653 4 33 7899999999998875210 0000 11112335699999886554
No 111
>KOG3113 consensus Uncharacterized conserved protein [Function unknown]
Probab=78.60 E-value=3.8 Score=36.77 Aligned_cols=49 Identities=18% Similarity=0.349 Sum_probs=38.0
Q ss_pred cCceeccccccCCCcEE----ccCCCcchHHhHHHHHhhhhHhcccCCCCCCCCccccccccCCCC
Q 021263 230 YDLTCAVCLDLVFNPYA----LSCGHLFCKLCACSAASVMVFEGLKSASPDSKCPICREIIHISSI 291 (315)
Q Consensus 230 ~~l~C~IC~~~~~~Pv~----l~CgH~FC~~Ci~~~~~~~~~~~~~~~~~~~~CP~Cr~~v~~~~~ 291 (315)
..+.|||-.-.+..-.. .+|||.|-..-+.+. ....|++|.+.+..+++
T Consensus 110 a~fiCPvtgleMng~~~F~~l~~CGcV~SerAlKei-------------kas~C~~C~a~y~~~dv 162 (293)
T KOG3113|consen 110 ARFICPVTGLEMNGKYRFCALRCCGCVFSERALKEI-------------KASVCHVCGAAYQEDDV 162 (293)
T ss_pred ceeecccccceecceEEEEEEeccceeccHHHHHHh-------------hhccccccCCcccccCe
Confidence 56899998766665433 489999999888765 45789999999888864
No 112
>PHA02862 5L protein; Provisional
Probab=76.87 E-value=3.2 Score=34.15 Aligned_cols=48 Identities=21% Similarity=0.404 Sum_probs=34.6
Q ss_pred ceeccccccCCCcEEccCCC-----cchHHhHHHHHhhhhHhcccCCCCCCCCccccccccCC
Q 021263 232 LTCAVCLDLVFNPYALSCGH-----LFCKLCACSAASVMVFEGLKSASPDSKCPICREIIHIS 289 (315)
Q Consensus 232 l~C~IC~~~~~~Pv~l~CgH-----~FC~~Ci~~~~~~~~~~~~~~~~~~~~CP~Cr~~v~~~ 289 (315)
-.|=||.+.-.+. .-||.. --..+|+.+|.. .+....||.|+.++..+
T Consensus 3 diCWIC~~~~~e~-~~PC~C~GS~K~VHq~CL~~WIn---------~S~k~~CeLCkteY~Ik 55 (156)
T PHA02862 3 DICWICNDVCDER-NNFCGCNEEYKVVHIKCMQLWIN---------YSKKKECNLCKTKYNIK 55 (156)
T ss_pred CEEEEecCcCCCC-cccccccCcchhHHHHHHHHHHh---------cCCCcCccCCCCeEEEE
Confidence 4699999875544 356654 237899999964 35778999999986554
No 113
>KOG3899 consensus Uncharacterized conserved protein [Function unknown]
Probab=72.00 E-value=1.3 Score=40.54 Aligned_cols=43 Identities=21% Similarity=0.500 Sum_probs=25.3
Q ss_pred CCCcchHHhHHHHHhhh--hHhcccCCCCCCCCccccccccCCCC
Q 021263 249 CGHLFCKLCACSAASVM--VFEGLKSASPDSKCPICREIIHISSI 291 (315)
Q Consensus 249 CgH~FC~~Ci~~~~~~~--~~~~~~~~~~~~~CP~Cr~~v~~~~~ 291 (315)
|....|.+|+.+|+.-. .+....-..+...||.||+.+...++
T Consensus 325 crp~wc~~cla~~f~~rq~~v~r~~~~~~~~~cp~cr~~fci~dv 369 (381)
T KOG3899|consen 325 CRPLWCRSCLAQIFIGRQDNVYRYEYHRGSAQCPTCRKNFCIRDV 369 (381)
T ss_pred cccHHHHHHHHHHHhhcccchhHHHHHhcCCCCcchhhceEEeee
Confidence 34455789999987310 00000112467899999998665543
No 114
>PF10497 zf-4CXXC_R1: Zinc-finger domain of monoamine-oxidase A repressor R1; InterPro: IPR018866 R1 is a transcription factor repressor that inhibits monoamine oxidase A gene expression. This domain is a four-CXXC zinc finger putative DNA-binding domain found at the C-terminal end of R1. The domain carries 12 cysteines of which four pairs are of the CXXC type [].
Probab=70.83 E-value=4.9 Score=31.34 Aligned_cols=34 Identities=38% Similarity=0.602 Sum_probs=23.9
Q ss_pred CCcchHHhHHHHHhhhhHhcccCCCCCCCCcccccc
Q 021263 250 GHLFCKLCACSAASVMVFEGLKSASPDSKCPICREI 285 (315)
Q Consensus 250 gH~FC~~Ci~~~~~~~~~~~~~~~~~~~~CP~Cr~~ 285 (315)
.-.||..|+...+.....+.. ......||.||..
T Consensus 37 ~~~fC~~CL~~ryge~~~ev~--~~~~W~CP~Crgi 70 (105)
T PF10497_consen 37 RGKFCGGCLRNRYGENVEEVL--EDPNWKCPKCRGI 70 (105)
T ss_pred cceehHhHHHHHHhhhHHHHh--cCCceECCCCCCe
Confidence 667999999888763333322 2467899999875
No 115
>PF07191 zinc-ribbons_6: zinc-ribbons; InterPro: IPR010807 This family consists of several short, hypothetical bacterial proteins of around 70 residues in length. Members of this family 8 highly conserved cysteine residues. The function of the family is unknown.; PDB: 2JRP_A 2JNE_A.
Probab=70.76 E-value=0.28 Score=35.21 Aligned_cols=40 Identities=25% Similarity=0.632 Sum_probs=21.6
Q ss_pred ceeccccccCCCcEEccCCCcchHHhHHHHHhhhhHhcccCCCCCCCCcccccccc
Q 021263 232 LTCAVCLDLVFNPYALSCGHLFCKLCACSAASVMVFEGLKSASPDSKCPICREIIH 287 (315)
Q Consensus 232 l~C~IC~~~~~~Pv~l~CgH~FC~~Ci~~~~~~~~~~~~~~~~~~~~CP~Cr~~v~ 287 (315)
+.||.|...+ ...=||.+|..|-..+ .....||.|..++.
T Consensus 2 ~~CP~C~~~L----~~~~~~~~C~~C~~~~------------~~~a~CPdC~~~Le 41 (70)
T PF07191_consen 2 NTCPKCQQEL----EWQGGHYHCEACQKDY------------KKEAFCPDCGQPLE 41 (70)
T ss_dssp -B-SSS-SBE----EEETTEEEETTT--EE------------EEEEE-TTT-SB-E
T ss_pred CcCCCCCCcc----EEeCCEEECccccccc------------eecccCCCcccHHH
Confidence 5799998753 2222788888887554 24567999988754
No 116
>PF03854 zf-P11: P-11 zinc finger; InterPro: IPR003224 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The RING-finger is a specialised type of Zn-finger of 40 to 60 residues that binds two atoms of zinc, and is probably involved in mediating protein-protein interactions [, , ]. There are two different variants, the C3HC4-type and a C3H2C3-type, which is clearly related despite the different cysteine/histidine pattern. The latter type is sometimes referred to as 'RING-H2 finger'. The RING domain is a protein interaction domain which has been implicated in a range of diverse biological processes. Several 3D-structures for RING-fingers are known [, ]. The 3D structure of the zinc ligation system is unique to the RING domain and is referred to as the 'cross-brace' motif. The spacing of the cysteines in such a domain is: C-x(2)-C-x(9 to 39)-C-x(1 to 3)-H-x(2 to 3)-C-x(2)-C-x(4 to 48)-C-x(2)-C Metal ligand pairs one and three co-ordinate to bind one zinc ion, whilst pairs two and four bind the second. This entry represents RING finger protein Z, a small polypeptide found in some negative-strand RNA viruses including Lassa fever virus, which plays a crucial role in virion assembly and budding. RING finger Z has been shown to interact with several host proteins, including promyelocytic leukemia protein and the eukaryotic translation initiation factor 4E [, ]. It is sufficient in the absence of any other viral proteins to release virus-like particles from the infected cell []. This protein is also responsible for arenavirus superinfection exclusion; expression of this protein in a host cell strongly and specifically inhibits areanavirus transcription and replication []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003723 RNA binding, 0008270 zinc ion binding; PDB: 2KO5_A.
Probab=69.62 E-value=2.1 Score=28.24 Aligned_cols=32 Identities=28% Similarity=0.751 Sum_probs=20.9
Q ss_pred EccCC-CcchHHhHHHHHhhhhHhcccCCCCCCCCccccccccC
Q 021263 246 ALSCG-HLFCKLCACSAASVMVFEGLKSASPDSKCPICREIIHI 288 (315)
Q Consensus 246 ~l~Cg-H~FC~~Ci~~~~~~~~~~~~~~~~~~~~CP~Cr~~v~~ 288 (315)
.+.|. |-.|..|+..-+ +.+..||+|..+++.
T Consensus 15 Li~C~dHYLCl~CLt~ml-----------~~s~~C~iC~~~LPt 47 (50)
T PF03854_consen 15 LIKCSDHYLCLNCLTLML-----------SRSDRCPICGKPLPT 47 (50)
T ss_dssp EEE-SS-EEEHHHHHHT------------SSSSEETTTTEE---
T ss_pred eeeecchhHHHHHHHHHh-----------ccccCCCcccCcCcc
Confidence 45676 778999997654 367899999988764
No 117
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=68.38 E-value=2.7 Score=44.08 Aligned_cols=36 Identities=28% Similarity=0.618 Sum_probs=28.7
Q ss_pred cCccCceecccccc-CCCcEE-ccCCCcchHHhHHHHH
Q 021263 227 KLEYDLTCAVCLDL-VFNPYA-LSCGHLFCKLCACSAA 262 (315)
Q Consensus 227 ~l~~~l~C~IC~~~-~~~Pv~-l~CgH~FC~~Ci~~~~ 262 (315)
.++....|.+|... +..|-. .+|||.|.+.|+.+..
T Consensus 813 v~ep~d~C~~C~~~ll~~pF~vf~CgH~FH~~Cl~~~v 850 (911)
T KOG2034|consen 813 VLEPQDSCDHCGRPLLIKPFYVFPCGHCFHRDCLIRHV 850 (911)
T ss_pred EecCccchHHhcchhhcCcceeeeccchHHHHHHHHHH
Confidence 45677899999985 456754 6999999999998764
No 118
>PF10235 Cript: Microtubule-associated protein CRIPT; InterPro: IPR019367 The CRIPT protein is a cytoskeletal protein involved in microtubule production. This C-terminal domain is essential for binding to the PDZ3 domain of the SAP90 protein, one of a super-family of PDZ-containing proteins that play an important role in coupling the membrane ion channels with their signalling partners [].
Probab=67.71 E-value=3.8 Score=30.98 Aligned_cols=39 Identities=28% Similarity=0.747 Sum_probs=29.9
Q ss_pred CceeccccccCCCcEEccCCCcchHHhHHHHHhhhhHhcccCCCCCCCCccccccccCC
Q 021263 231 DLTCAVCLDLVFNPYALSCGHLFCKLCACSAASVMVFEGLKSASPDSKCPICREIIHIS 289 (315)
Q Consensus 231 ~l~C~IC~~~~~~Pv~l~CgH~FC~~Ci~~~~~~~~~~~~~~~~~~~~CP~Cr~~v~~~ 289 (315)
.-.|-||...+..| ||.||..|.- ....|.+|...+...
T Consensus 44 ~~~C~~CK~~v~q~-----g~~YCq~CAY---------------kkGiCamCGKki~dt 82 (90)
T PF10235_consen 44 SSKCKICKTKVHQP-----GAKYCQTCAY---------------KKGICAMCGKKILDT 82 (90)
T ss_pred CccccccccccccC-----CCccChhhhc---------------ccCcccccCCeeccc
Confidence 45799998866554 8999999972 456899998887544
No 119
>PF10571 UPF0547: Uncharacterised protein family UPF0547; InterPro: IPR018886 This domain may well be a type of zinc-finger as it carries two pairs of highly conserved cysteine residues though with no accompanying histidines. Several members are annotated as putative helicases.
Probab=67.43 E-value=2.7 Score=24.12 Aligned_cols=21 Identities=33% Similarity=0.562 Sum_probs=11.0
Q ss_pred eeccccccCCCcEEc--cCCCcc
Q 021263 233 TCAVCLDLVFNPYAL--SCGHLF 253 (315)
Q Consensus 233 ~C~IC~~~~~~Pv~l--~CgH~F 253 (315)
.||-|...+..-... .|||.|
T Consensus 2 ~CP~C~~~V~~~~~~Cp~CG~~F 24 (26)
T PF10571_consen 2 TCPECGAEVPESAKFCPHCGYDF 24 (26)
T ss_pred cCCCCcCCchhhcCcCCCCCCCC
Confidence 477776655332222 366665
No 120
>PF12906 RINGv: RING-variant domain; PDB: 2D8S_A 1VYX_A.
Probab=66.07 E-value=3.2 Score=27.33 Aligned_cols=40 Identities=28% Similarity=0.562 Sum_probs=22.7
Q ss_pred eccccccCC--CcEEccCCCc-----chHHhHHHHHhhhhHhcccCCCCCCCCccc
Q 021263 234 CAVCLDLVF--NPYALSCGHL-----FCKLCACSAASVMVFEGLKSASPDSKCPIC 282 (315)
Q Consensus 234 C~IC~~~~~--~Pv~l~CgH~-----FC~~Ci~~~~~~~~~~~~~~~~~~~~CP~C 282 (315)
|-||.+.-. +|...||+-. ....|+.+|... .+...|++|
T Consensus 1 CrIC~~~~~~~~~li~pC~C~Gs~~~vH~~CL~~W~~~---------~~~~~C~~C 47 (47)
T PF12906_consen 1 CRICLEGEEEDEPLISPCRCKGSMKYVHRSCLERWIRE---------SGNRKCEIC 47 (47)
T ss_dssp ETTTTEE-SSSS-EE-SSS-SSCCGSEECCHHHHHHHH---------HT-SB-TTT
T ss_pred CeEeCCcCCCCCceecccccCCCcchhHHHHHHHHHHh---------cCCCcCCCC
Confidence 567776533 2567777643 377899999751 345668887
No 121
>COG0068 HypF Hydrogenase maturation factor [Posttranslational modification, protein turnover, chaperones]
Probab=64.67 E-value=3 Score=42.83 Aligned_cols=57 Identities=25% Similarity=0.585 Sum_probs=39.4
Q ss_pred cCceeccccccCCCc----------EEccCCCcc--------------------hHHhHHHHHhhhhHhcccCCCCCCCC
Q 021263 230 YDLTCAVCLDLVFNP----------YALSCGHLF--------------------CKLCACSAASVMVFEGLKSASPDSKC 279 (315)
Q Consensus 230 ~~l~C~IC~~~~~~P----------v~l~CgH~F--------------------C~~Ci~~~~~~~~~~~~~~~~~~~~C 279 (315)
+.-+|+-|+.-+.|| ..+.||..| |..|-..+-. ....+-+.....|
T Consensus 100 D~a~C~~Cl~Ei~dp~~rrY~YPF~~CT~CGPRfTIi~alPYDR~nTsM~~F~lC~~C~~EY~d---P~nRRfHAQp~aC 176 (750)
T COG0068 100 DAATCEDCLEEIFDPNSRRYLYPFINCTNCGPRFTIIEALPYDRENTSMADFPLCPFCDKEYKD---PLNRRFHAQPIAC 176 (750)
T ss_pred chhhhHHHHHHhcCCCCcceeccccccCCCCcceeeeccCCCCcccCccccCcCCHHHHHHhcC---ccccccccccccC
Confidence 567899999988887 225788888 9999987632 1112223467899
Q ss_pred ccccccccCC
Q 021263 280 PICREIIHIS 289 (315)
Q Consensus 280 P~Cr~~v~~~ 289 (315)
|.|.-.+...
T Consensus 177 p~CGP~~~l~ 186 (750)
T COG0068 177 PKCGPHLFLV 186 (750)
T ss_pred cccCCCeEEE
Confidence 9997765544
No 122
>PRK04023 DNA polymerase II large subunit; Validated
Probab=64.60 E-value=5.1 Score=42.80 Aligned_cols=61 Identities=16% Similarity=0.257 Sum_probs=40.2
Q ss_pred cCceeccccccCCCcEEccCCC-----cchHHhHHHHHhhhhHhcccCCCCCCCCccccccccCCCC-cHHHHHHHHHHH
Q 021263 230 YDLTCAVCLDLVFNPYALSCGH-----LFCKLCACSAASVMVFEGLKSASPDSKCPICREIIHISSI-GAGWQLGCKETW 303 (315)
Q Consensus 230 ~~l~C~IC~~~~~~Pv~l~CgH-----~FC~~Ci~~~~~~~~~~~~~~~~~~~~CP~Cr~~v~~~~~-n~~l~~lv~~~~ 303 (315)
....||-|...........||. .||..|-.. .....||.|...+..... ...++.++....
T Consensus 625 g~RfCpsCG~~t~~frCP~CG~~Te~i~fCP~CG~~-------------~~~y~CPKCG~El~~~s~~~i~l~~~~~~A~ 691 (1121)
T PRK04023 625 GRRKCPSCGKETFYRRCPFCGTHTEPVYRCPRCGIE-------------VEEDECEKCGREPTPYSKRKIDLKELYDRAL 691 (1121)
T ss_pred cCccCCCCCCcCCcccCCCCCCCCCcceeCccccCc-------------CCCCcCCCCCCCCCccceEEecHHHHHHHHH
Confidence 4578999998764444456985 599999422 245679999988766543 444555554443
No 123
>COG3813 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=64.03 E-value=5.2 Score=28.78 Aligned_cols=31 Identities=26% Similarity=0.501 Sum_probs=23.5
Q ss_pred cCCCcchHHhHHHHHhhhhHhcccCCCCCCCCccccccccCCCC
Q 021263 248 SCGHLFCKLCACSAASVMVFEGLKSASPDSKCPICREIIHISSI 291 (315)
Q Consensus 248 ~CgH~FC~~Ci~~~~~~~~~~~~~~~~~~~~CP~Cr~~v~~~~~ 291 (315)
.=.|+||..|.... -...||.|.-.+....+
T Consensus 26 tfEcTFCadCae~~-------------l~g~CPnCGGelv~RP~ 56 (84)
T COG3813 26 TFECTFCADCAENR-------------LHGLCPNCGGELVARPI 56 (84)
T ss_pred EEeeehhHhHHHHh-------------hcCcCCCCCchhhcCcC
Confidence 34579999999754 45789999888776655
No 124
>PF05605 zf-Di19: Drought induced 19 protein (Di19), zinc-binding; InterPro: IPR008598 This entry consists of several drought induced 19 (Di19) like and RING finger 114 proteins. Di19 has been found to be strongly expressed in both the roots and leaves of Arabidopsis thaliana during progressive drought [], whilst RING finger proteins are thought to play a role in spermatogenesis. The precise function is unknown.
Probab=62.24 E-value=5.3 Score=26.93 Aligned_cols=40 Identities=25% Similarity=0.499 Sum_probs=22.5
Q ss_pred cCceeccccccCCCcEEccCCCcchHHhHHHHHhhhhHhcccCCCCCCCCcccccc
Q 021263 230 YDLTCAVCLDLVFNPYALSCGHLFCKLCACSAASVMVFEGLKSASPDSKCPICREI 285 (315)
Q Consensus 230 ~~l~C~IC~~~~~~Pv~l~CgH~FC~~Ci~~~~~~~~~~~~~~~~~~~~CP~Cr~~ 285 (315)
+.+.||.|.+.+... .++.-|.... ........||+|...
T Consensus 1 ~~f~CP~C~~~~~~~-------~L~~H~~~~H---------~~~~~~v~CPiC~~~ 40 (54)
T PF05605_consen 1 DSFTCPYCGKGFSES-------SLVEHCEDEH---------RSESKNVVCPICSSR 40 (54)
T ss_pred CCcCCCCCCCccCHH-------HHHHHHHhHC---------cCCCCCccCCCchhh
Confidence 358899999843321 2233343322 222356889999763
No 125
>COG5183 SSM4 Protein involved in mRNA turnover and stability [RNA processing and modification]
Probab=59.47 E-value=13 Score=38.89 Aligned_cols=67 Identities=19% Similarity=0.342 Sum_probs=47.4
Q ss_pred ccCceeccccc--cCCCcEEccCCCcc-----hHHhHHHHHhhhhHhcccCCCCCCCCccccccccCCCC----------
Q 021263 229 EYDLTCAVCLD--LVFNPYALSCGHLF-----CKLCACSAASVMVFEGLKSASPDSKCPICREIIHISSI---------- 291 (315)
Q Consensus 229 ~~~l~C~IC~~--~~~~Pv~l~CgH~F-----C~~Ci~~~~~~~~~~~~~~~~~~~~CP~Cr~~v~~~~~---------- 291 (315)
+++-+|-||.. .-.+|..-||..+- ..+|+.+|.. .++...|-+|..++.-+++
T Consensus 10 ~d~~~CRICr~e~~~d~pLfhPCKC~GSIkYiH~eCL~eW~~---------~s~~~kCdiChy~~~Fk~IY~e~mP~~IP 80 (1175)
T COG5183 10 EDKRSCRICRTEDIRDDPLFHPCKCSGSIKYIHRECLMEWME---------CSGTKKCDICHYEYKFKDIYKEDMPQIIP 80 (1175)
T ss_pred ccchhceeecCCCCCCCcCcccccccchhHHHHHHHHHHHHh---------cCCCcceeeecceeeeeeecccCCCcccc
Confidence 35688999874 56678777877653 6789999864 4678899999988554422
Q ss_pred -cHHHHHHHHHHHH
Q 021263 292 -GAGWQLGCKETWQ 304 (315)
Q Consensus 292 -n~~l~~lv~~~~~ 304 (315)
...++..++.+|+
T Consensus 81 fsiL~rk~a~t~~~ 94 (1175)
T COG5183 81 FSILIRKVADTGWK 94 (1175)
T ss_pred eehhHHHHHHHHHH
Confidence 4566666666655
No 126
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=59.00 E-value=6.4 Score=36.78 Aligned_cols=47 Identities=23% Similarity=0.646 Sum_probs=33.6
Q ss_pred CceeccccccCC--CcEE--ccCCCcchHHhHHHHHhhhhHhcccCCCCCCCCccccccccC
Q 021263 231 DLTCAVCLDLVF--NPYA--LSCGHLFCKLCACSAASVMVFEGLKSASPDSKCPICREIIHI 288 (315)
Q Consensus 231 ~l~C~IC~~~~~--~Pv~--l~CgH~FC~~Ci~~~~~~~~~~~~~~~~~~~~CP~Cr~~v~~ 288 (315)
.-.||+|.+... +--. .+||+..|..|+.... .+..+||.||.+...
T Consensus 249 ~~s~p~~~~~~~~~d~~~lP~~~~~~~~l~~~~t~~-----------~~~~~~~~~rk~~~~ 299 (327)
T KOG2068|consen 249 PPSCPICYEDLDLTDSNFLPCPCGFRLCLFCHKTIS-----------DGDGRCPGCRKPYER 299 (327)
T ss_pred CCCCCCCCCcccccccccccccccccchhhhhhccc-----------ccCCCCCccCCcccc
Confidence 467999998652 2222 3699999999986652 478899999976443
No 127
>PF14569 zf-UDP: Zinc-binding RING-finger; PDB: 1WEO_A.
Probab=57.51 E-value=13 Score=27.29 Aligned_cols=49 Identities=20% Similarity=0.483 Sum_probs=19.3
Q ss_pred cCceeccccccCC-----CcEEc--cCCCcchHHhHHHHHhhhhHhcccCCCCCCCCccccccccC
Q 021263 230 YDLTCAVCLDLVF-----NPYAL--SCGHLFCKLCACSAASVMVFEGLKSASPDSKCPICREIIHI 288 (315)
Q Consensus 230 ~~l~C~IC~~~~~-----~Pv~l--~CgH~FC~~Ci~~~~~~~~~~~~~~~~~~~~CP~Cr~~v~~ 288 (315)
..-.|.||.+..- ++... .|+--.|+.|..=-. ..+...||-|++++..
T Consensus 8 ~~qiCqiCGD~VGl~~~Ge~FVAC~eC~fPvCr~CyEYEr----------keg~q~CpqCkt~ykr 63 (80)
T PF14569_consen 8 NGQICQICGDDVGLTENGEVFVACHECAFPVCRPCYEYER----------KEGNQVCPQCKTRYKR 63 (80)
T ss_dssp SS-B-SSS--B--B-SSSSB--S-SSS-----HHHHHHHH----------HTS-SB-TTT--B---
T ss_pred CCcccccccCccccCCCCCEEEEEcccCCccchhHHHHHh----------hcCcccccccCCCccc
Confidence 3567999997543 33332 588888999974321 1477889999987654
No 128
>smart00734 ZnF_Rad18 Rad18-like CCHC zinc finger. Yeast Rad18p functions with Rad5p in error-free post-replicative DNA repair. This zinc finger is likely to bind nucleic-acids.
Probab=56.35 E-value=4.4 Score=23.17 Aligned_cols=20 Identities=20% Similarity=0.519 Sum_probs=14.5
Q ss_pred CCCccccccccCCCCcHHHH
Q 021263 277 SKCPICREIIHISSIGAGWQ 296 (315)
Q Consensus 277 ~~CP~Cr~~v~~~~~n~~l~ 296 (315)
..||+|...+....+|..+.
T Consensus 2 v~CPiC~~~v~~~~in~HLD 21 (26)
T smart00734 2 VQCPVCFREVPENLINSHLD 21 (26)
T ss_pred CcCCCCcCcccHHHHHHHHH
Confidence 36999999886655666654
No 129
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=54.42 E-value=8 Score=40.22 Aligned_cols=52 Identities=17% Similarity=0.181 Sum_probs=34.8
Q ss_pred cCceeccccccCCCcEE----c---cCCCcchHHhHHHHHhhhhHhcccCCCCCCCCccccccc
Q 021263 230 YDLTCAVCLDLVFNPYA----L---SCGHLFCKLCACSAASVMVFEGLKSASPDSKCPICREII 286 (315)
Q Consensus 230 ~~l~C~IC~~~~~~Pv~----l---~CgH~FC~~Ci~~~~~~~~~~~~~~~~~~~~CP~Cr~~v 286 (315)
+..+|++|.--+.+|+- . .|+|.||..||..|.. .+........|+.|..-+
T Consensus 95 ~s~Ss~~C~~E~S~~~ds~~i~P~~~~~~~~CP~Ci~s~~D-----qL~~~~k~c~H~FC~~Ci 153 (1134)
T KOG0825|consen 95 ESDTSPVCEKEHSPDVDSSNICPVQTHVENQCPNCLKSCND-----QLEESEKHTAHYFCEECV 153 (1134)
T ss_pred cccccchhheecCCcccccCcCchhhhhhhhhhHHHHHHHH-----HhhccccccccccHHHHh
Confidence 45778888877776432 2 3999999999999854 233334556677775443
No 130
>COG1592 Rubrerythrin [Energy production and conversion]
Probab=51.07 E-value=9.5 Score=32.29 Aligned_cols=12 Identities=33% Similarity=0.814 Sum_probs=8.9
Q ss_pred CCCCCCcccccc
Q 021263 274 SPDSKCPICREI 285 (315)
Q Consensus 274 ~~~~~CP~Cr~~ 285 (315)
..+..||+|.++
T Consensus 147 e~P~~CPiCga~ 158 (166)
T COG1592 147 EAPEVCPICGAP 158 (166)
T ss_pred CCCCcCCCCCCh
Confidence 366789999765
No 131
>COG5627 MMS21 DNA repair protein MMS21 [DNA replication, recombination, and repair]
Probab=49.43 E-value=19 Score=32.14 Aligned_cols=74 Identities=15% Similarity=0.195 Sum_probs=47.7
Q ss_pred CceeccccccCCCcEE-ccCCCcchHHhHHHHHhhhhHhcccCCCCCCCCcc--ccccccCCCC--cHHHHHHHHHHHHh
Q 021263 231 DLTCAVCLDLVFNPYA-LSCGHLFCKLCACSAASVMVFEGLKSASPDSKCPI--CREIIHISSI--GAGWQLGCKETWQE 305 (315)
Q Consensus 231 ~l~C~IC~~~~~~Pv~-l~CgH~FC~~Ci~~~~~~~~~~~~~~~~~~~~CP~--Cr~~v~~~~~--n~~l~~lv~~~~~e 305 (315)
+.+|||-....+-|+. ..|.|.|=.+-|..... ......||. |.+.+..+.. ...|.....+-.--
T Consensus 189 ~nrCpitl~p~~~pils~kcnh~~e~D~I~~~lq---------~~~trvcp~~~Csq~~~~~~~v~d~IlE~R~~~~~ir 259 (275)
T COG5627 189 SNRCPITLNPDFYPILSSKCNHKPEMDLINKKLQ---------VECTRVCPRLICSQKEVVDPYVCDHILEKREAMKYIR 259 (275)
T ss_pred cccCCcccCcchhHHHHhhhcccccHHHHHHHhc---------CCceeecchhhcchheeccchhhhHHHHHHHHHHHHH
Confidence 5899998888888876 57999999998877642 134566774 6555555443 55554444443344
Q ss_pred cccccCCC
Q 021263 306 YMRKQSTC 313 (315)
Q Consensus 306 ~~~~~~~c 313 (315)
+.++|..|
T Consensus 260 ~sqeq~~~ 267 (275)
T COG5627 260 NSQEQIGC 267 (275)
T ss_pred hhhhhhch
Confidence 44555555
No 132
>PF14446 Prok-RING_1: Prokaryotic RING finger family 1
Probab=48.86 E-value=16 Score=24.92 Aligned_cols=31 Identities=19% Similarity=0.355 Sum_probs=24.3
Q ss_pred cCceeccccccC--CCcEE--ccCCCcchHHhHHH
Q 021263 230 YDLTCAVCLDLV--FNPYA--LSCGHLFCKLCACS 260 (315)
Q Consensus 230 ~~l~C~IC~~~~--~~Pv~--l~CgH~FC~~Ci~~ 260 (315)
..-.|++|.+.| .+.+. ..||-.+.+.|..+
T Consensus 4 ~~~~C~~Cg~~~~~~dDiVvCp~CgapyHR~C~~~ 38 (54)
T PF14446_consen 4 EGCKCPVCGKKFKDGDDIVVCPECGAPYHRDCWEK 38 (54)
T ss_pred cCccChhhCCcccCCCCEEECCCCCCcccHHHHhh
Confidence 356799999998 56655 36999999999743
No 133
>PF06906 DUF1272: Protein of unknown function (DUF1272); InterPro: IPR010696 This family consists of several hypothetical bacterial proteins of around 80 residues in length. This family contains a number of conserved cysteine residues and its function is unknown.
Probab=47.24 E-value=36 Score=23.35 Aligned_cols=44 Identities=25% Similarity=0.477 Sum_probs=27.2
Q ss_pred eeccccccCCC----cEEccCCCcchHHhHHHHHhhhhHhcccCCCCCCCCccccccccCC
Q 021263 233 TCAVCLDLVFN----PYALSCGHLFCKLCACSAASVMVFEGLKSASPDSKCPICREIIHIS 289 (315)
Q Consensus 233 ~C~IC~~~~~~----Pv~l~CgH~FC~~Ci~~~~~~~~~~~~~~~~~~~~CP~Cr~~v~~~ 289 (315)
.|-.|...+.. +.+-+=..+||..|.... -...||.|.-.+..+
T Consensus 7 nCE~C~~dLp~~s~~A~ICSfECTFC~~C~e~~-------------l~~~CPNCgGelv~R 54 (57)
T PF06906_consen 7 NCECCDKDLPPDSPEAYICSFECTFCADCAETM-------------LNGVCPNCGGELVRR 54 (57)
T ss_pred CccccCCCCCCCCCcceEEeEeCcccHHHHHHH-------------hcCcCcCCCCccccC
Confidence 45556554432 222233458999999764 246899998776544
No 134
>PF15616 TerY-C: TerY-C metal binding domain
Probab=44.51 E-value=13 Score=30.22 Aligned_cols=46 Identities=24% Similarity=0.453 Sum_probs=32.8
Q ss_pred ccCccCceeccccccCCCcEEccCCCcchHHhHHHHHhhhhHhcccCCCCCCCCccccccccC
Q 021263 226 IKLEYDLTCAVCLDLVFNPYALSCGHLFCKLCACSAASVMVFEGLKSASPDSKCPICREIIHI 288 (315)
Q Consensus 226 ~~l~~~l~C~IC~~~~~~Pv~l~CgH~FC~~Ci~~~~~~~~~~~~~~~~~~~~CP~Cr~~v~~ 288 (315)
..|...-.||-|...+--.+- .||+.||.. ......||-|......
T Consensus 72 seL~g~PgCP~CGn~~~fa~C-~CGkl~Ci~----------------g~~~~~CPwCg~~g~~ 117 (131)
T PF15616_consen 72 SELIGAPGCPHCGNQYAFAVC-GCGKLFCID----------------GEGEVTCPWCGNEGSF 117 (131)
T ss_pred HHhcCCCCCCCCcChhcEEEe-cCCCEEEeC----------------CCCCEECCCCCCeeee
Confidence 344456789999987554444 799999863 1357899999877543
No 135
>PF07975 C1_4: TFIIH C1-like domain; InterPro: IPR004595 All proteins in this domain for which functions are known are components of the TFIIH complex which is involved in the initiation of transcription and nucleotide excision repair. It includes the yeast transcription factor Ssl1 (Suppressor of stem-loop protein 1) that is essential for translation initiation and affects UV resistance. The C-terminal region is essential for transcription activity. This regions binds three zinc atoms through two independent domain. The first contains a C4 zinc finger motif, whereas the second is characterised by a CX(2)CX(2-4)FCADCD motif. The solution structure of the second C-terminal domain revealed homology with the regulatory domain of protein kinase C [].; GO: 0006281 DNA repair, 0005634 nucleus; PDB: 1Z60_A.
Probab=44.34 E-value=30 Score=23.23 Aligned_cols=25 Identities=28% Similarity=0.685 Sum_probs=14.0
Q ss_pred cCCCcchHHhHHHHHhhhhHhcccCCCCCCCCcccc
Q 021263 248 SCGHLFCKLCACSAASVMVFEGLKSASPDSKCPICR 283 (315)
Q Consensus 248 ~CgH~FC~~Ci~~~~~~~~~~~~~~~~~~~~CP~Cr 283 (315)
.|++.||.+|=.= .+.....||-|-
T Consensus 26 ~C~~~FC~dCD~f-----------iHE~LH~CPGC~ 50 (51)
T PF07975_consen 26 KCKNHFCIDCDVF-----------IHETLHNCPGCE 50 (51)
T ss_dssp TTT--B-HHHHHT-----------TTTTS-SSSTT-
T ss_pred CCCCccccCcChh-----------hhccccCCcCCC
Confidence 5899999999421 134677899883
No 136
>KOG2979 consensus Protein involved in DNA repair [General function prediction only]
Probab=44.14 E-value=11 Score=33.92 Aligned_cols=46 Identities=15% Similarity=0.290 Sum_probs=35.0
Q ss_pred CceeccccccCCCcEE-ccCCCcchHHhHHHHHhhhhHhcccCCCCCCCCcccccc
Q 021263 231 DLTCAVCLDLVFNPYA-LSCGHLFCKLCACSAASVMVFEGLKSASPDSKCPICREI 285 (315)
Q Consensus 231 ~l~C~IC~~~~~~Pv~-l~CgH~FC~~Ci~~~~~~~~~~~~~~~~~~~~CP~Cr~~ 285 (315)
.++||+-...+.+|+. ..|||.|=+.-|..... ......||+=..+
T Consensus 176 s~rdPis~~~I~nPviSkkC~HvydrDsI~~~l~---------~~~~i~CPv~gC~ 222 (262)
T KOG2979|consen 176 SNRDPISKKPIVNPVISKKCGHVYDRDSIMQILC---------DEITIRCPVLGCE 222 (262)
T ss_pred cccCchhhhhhhchhhhcCcCcchhhhhHHHHhc---------cCceeecccccCC
Confidence 5889998889999987 67999999998877632 1356788874333
No 137
>PF14353 CpXC: CpXC protein
Probab=43.93 E-value=16 Score=29.14 Aligned_cols=50 Identities=16% Similarity=0.106 Sum_probs=26.5
Q ss_pred ceeccccccCCCcEEccCCCcchHHhHHHHHhhhhHhcccCCCCCCCCccccccccCC
Q 021263 232 LTCAVCLDLVFNPYALSCGHLFCKLCACSAASVMVFEGLKSASPDSKCPICREIIHIS 289 (315)
Q Consensus 232 l~C~IC~~~~~~Pv~l~CgH~FC~~Ci~~~~~~~~~~~~~~~~~~~~CP~Cr~~v~~~ 289 (315)
++||.|...+.-.+-+.-.-..=..=.... +.+.-....||.|...+...
T Consensus 2 itCP~C~~~~~~~v~~~I~~~~~p~l~e~i--------l~g~l~~~~CP~Cg~~~~~~ 51 (128)
T PF14353_consen 2 ITCPHCGHEFEFEVWTSINADEDPELKEKI--------LDGSLFSFTCPSCGHKFRLE 51 (128)
T ss_pred cCCCCCCCeeEEEEEeEEcCcCCHHHHHHH--------HcCCcCEEECCCCCCceecC
Confidence 678888887765544322211111122222 11223568999998885443
No 138
>KOG2169 consensus Zn-finger transcription factor [Transcription]
Probab=42.64 E-value=18 Score=37.30 Aligned_cols=70 Identities=17% Similarity=0.328 Sum_probs=45.4
Q ss_pred cCccCceeccccccCCCcEE-ccCCCcchHHhHHHHHhhhhHhcccCCCCCCCCccccccccCCCC--cHHHHHHHHHHH
Q 021263 227 KLEYDLTCAVCLDLVFNPYA-LSCGHLFCKLCACSAASVMVFEGLKSASPDSKCPICREIIHISSI--GAGWQLGCKETW 303 (315)
Q Consensus 227 ~l~~~l~C~IC~~~~~~Pv~-l~CgH~FC~~Ci~~~~~~~~~~~~~~~~~~~~CP~Cr~~v~~~~~--n~~l~~lv~~~~ 303 (315)
.+.-.+.|||+..-+.-|.. ..|.|.-|.+-. +. .........+.||+|-.......+ ...+.+++...-
T Consensus 302 ~~~vSL~CPl~~~Rm~~P~r~~~CkHlQcFD~~---~~----lq~n~~~pTW~CPVC~~~~~~e~l~iD~~~~~iL~~~~ 374 (636)
T KOG2169|consen 302 SLRVSLNCPLSKMRMSLPARGHTCKHLQCFDAL---SY----LQMNEQKPTWRCPVCQKAAPFEGLIIDGYFLNILQSCQ 374 (636)
T ss_pred cceeEecCCcccceeecCCcccccccceecchh---hh----HHhccCCCeeeCccCCccccccchhhhHHHHHHHhhcc
Confidence 34567999999987777765 578887666543 21 111223578999999887666654 555556655543
No 139
>PF04216 FdhE: Protein involved in formate dehydrogenase formation; InterPro: IPR006452 This family of sequences describe an accessory protein required for the assembly of formate dehydrogenase of certain proteobacteria although not present in the final complex []. The exact nature of the function of FdhE in the assembly of the complex is unknown, but considering the presence of selenocysteine, molybdopterin, iron-sulphur clusters and cytochrome b556, it is likely to be involved in the insertion of cofactors. ; GO: 0005737 cytoplasm; PDB: 2FIY_B.
Probab=42.11 E-value=4.8 Score=37.19 Aligned_cols=44 Identities=27% Similarity=0.460 Sum_probs=17.2
Q ss_pred CceeccccccCCCcEEccC---C--CcchHHhHHHHHhhhhHhcccCCCCCCCCcccccc
Q 021263 231 DLTCAVCLDLVFNPYALSC---G--HLFCKLCACSAASVMVFEGLKSASPDSKCPICREI 285 (315)
Q Consensus 231 ~l~C~IC~~~~~~Pv~l~C---g--H~FC~~Ci~~~~~~~~~~~~~~~~~~~~CP~Cr~~ 285 (315)
.-.||||.....-.+...= | +.+|.-|-..|- -....||.|...
T Consensus 172 ~g~CPvCGs~P~~s~l~~~~~~G~R~L~Cs~C~t~W~-----------~~R~~Cp~Cg~~ 220 (290)
T PF04216_consen 172 RGYCPVCGSPPVLSVLRGGEREGKRYLHCSLCGTEWR-----------FVRIKCPYCGNT 220 (290)
T ss_dssp -SS-TTT---EEEEEEE------EEEEEETTT--EEE-------------TTS-TTT---
T ss_pred CCcCCCCCCcCceEEEecCCCCccEEEEcCCCCCeee-----------ecCCCCcCCCCC
Confidence 4678888875443333221 3 456777876662 134568887544
No 140
>KOG4185 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=41.54 E-value=4.8 Score=37.09 Aligned_cols=45 Identities=31% Similarity=0.661 Sum_probs=32.1
Q ss_pred CceeccccccCC------CcEEcc--------CCCcchHHhHHHHHhhhhHhcccCCCCCCCCcccccc
Q 021263 231 DLTCAVCLDLVF------NPYALS--------CGHLFCKLCACSAASVMVFEGLKSASPDSKCPICREI 285 (315)
Q Consensus 231 ~l~C~IC~~~~~------~Pv~l~--------CgH~FC~~Ci~~~~~~~~~~~~~~~~~~~~CP~Cr~~ 285 (315)
...|.||...+. .|..+. |||+.|..|+..... .....||.|+..
T Consensus 207 ~~~c~ic~~~~~~n~~~~~p~vl~~~~~~~~~c~htlc~~c~~~~l~----------~~~~~cp~~~~~ 265 (296)
T KOG4185|consen 207 EKLCEICERIYSENDEKLAPLVLSLSRLKEKIEGHTLCKECIDTILL----------QAGIKCPFCTWS 265 (296)
T ss_pred HHHHHHHHHHhhccccccchhHHHHHHHHHHHHHHHHHhcchHHHHH----------HhhhcCCcccce
Confidence 356778776555 345556 999999999987653 122789999864
No 141
>TIGR01562 FdhE formate dehydrogenase accessory protein FdhE. The only sequence scoring between trusted and noise is that from Aquifex aeolicus, which shows certain structural differences from the proteobacterial forms in the alignment. However it is notable that A. aeolicus also has a sequence scoring above trusted to the alpha subunit of formate dehydrogenase (TIGR01553).
Probab=40.78 E-value=7.9 Score=36.12 Aligned_cols=11 Identities=18% Similarity=0.380 Sum_probs=6.6
Q ss_pred CceeccccccC
Q 021263 231 DLTCAVCLDLV 241 (315)
Q Consensus 231 ~l~C~IC~~~~ 241 (315)
.-.||||....
T Consensus 184 ~~~CPvCGs~P 194 (305)
T TIGR01562 184 RTLCPACGSPP 194 (305)
T ss_pred CCcCCCCCChh
Confidence 34677776644
No 142
>cd00350 rubredoxin_like Rubredoxin_like; nonheme iron binding domain containing a [Fe(SCys)4] center. The family includes rubredoxins, a small electron transfer protein, and a slightly smaller modular rubredoxin domain present in rubrerythrin and nigerythrin and detected either N- or C-terminal to such proteins as flavin reductase, NAD(P)H-nitrite reductase, and ferredoxin-thioredoxin reductase. In rubredoxin, the iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), but iron can also be replaced by cobalt, nickel or zinc and believed to be involved in electron transfer. Rubrerythrins and nigerythrins are small homodimeric proteins, generally consisting of 2 domains: a rubredoxin domain C-terminal to a non-sulfur, oxo-bridged diiron site in the N-terminal rubrerythrin domain. Rubrerythrins and nigerythrins have putative peroxide activity.
Probab=40.70 E-value=19 Score=21.64 Aligned_cols=11 Identities=27% Similarity=0.748 Sum_probs=8.1
Q ss_pred CCCCCcccccc
Q 021263 275 PDSKCPICREI 285 (315)
Q Consensus 275 ~~~~CP~Cr~~ 285 (315)
....||+|.++
T Consensus 16 ~~~~CP~Cg~~ 26 (33)
T cd00350 16 APWVCPVCGAP 26 (33)
T ss_pred CCCcCcCCCCc
Confidence 45689999764
No 143
>TIGR00143 hypF [NiFe] hydrogenase maturation protein HypF. A previously described regulatory effect of HypF mutatation is attributable to loss of activity of a regulatory hydrogenase. A zinc finger-like region CXXCX(18)CXXCX(24)CXXCX(18)CXXC region further supported the regulatory hypothesis. However, more recent work (PUBMED:11375153) shows the direct effect is on the activity of expressed hydrogenases with nickel/iron centers, rather than on expression.
Probab=40.32 E-value=14 Score=38.71 Aligned_cols=56 Identities=23% Similarity=0.475 Sum_probs=38.4
Q ss_pred cCceeccccccCCCcE----------EccCCCcc--------------------hHHhHHHHHhhhhHhcccCCCCCCCC
Q 021263 230 YDLTCAVCLDLVFNPY----------ALSCGHLF--------------------CKLCACSAASVMVFEGLKSASPDSKC 279 (315)
Q Consensus 230 ~~l~C~IC~~~~~~Pv----------~l~CgH~F--------------------C~~Ci~~~~~~~~~~~~~~~~~~~~C 279 (315)
+.-.|+-|+.-+.||- .+.||..| |..|...+.. -...+-+.....|
T Consensus 67 D~a~C~~Cl~E~~dp~~Rry~YpF~nCt~CGPr~~i~~~lpydr~~t~m~~f~~C~~C~~ey~~---p~~rr~h~~~~~C 143 (711)
T TIGR00143 67 DVATCSDCLEEMLDKNDRRYLYPFISCTHCGPRFTIIEALPYDRENTSMADFPLCPDCAKEYKD---PLDRRFHAQPIAC 143 (711)
T ss_pred chhhHHHHHHHhcCCCcccccCCcccccCCCCCeEEeecCCCCCCCcCCCCCcCCHHHHHHhcC---CccccCCCCCccC
Confidence 4577899988888771 25688777 9999988632 1222223456899
Q ss_pred ccccccccC
Q 021263 280 PICREIIHI 288 (315)
Q Consensus 280 P~Cr~~v~~ 288 (315)
|.|.-.+..
T Consensus 144 ~~Cgp~l~l 152 (711)
T TIGR00143 144 PRCGPQLNF 152 (711)
T ss_pred CCCCcEEEE
Confidence 999777654
No 144
>KOG2113 consensus Predicted RNA binding protein, contains KH domain [General function prediction only]
Probab=39.97 E-value=21 Score=33.21 Aligned_cols=48 Identities=15% Similarity=-0.027 Sum_probs=35.9
Q ss_pred cCccCceeccccccCCCcEEccCCC-cchHHhHHHHHhhhhHhcccCCCCCCCCcccccccc
Q 021263 227 KLEYDLTCAVCLDLVFNPYALSCGH-LFCKLCACSAASVMVFEGLKSASPDSKCPICREIIH 287 (315)
Q Consensus 227 ~l~~~l~C~IC~~~~~~Pv~l~CgH-~FC~~Ci~~~~~~~~~~~~~~~~~~~~CP~Cr~~v~ 287 (315)
.+...+.|-+|..-+...+-.+|+| .||.+|..- +....||+|-..++
T Consensus 339 ~~~s~~~~~~~~~~~~st~~~~~~~n~~~~~~a~~-------------s~~~~~~~c~~~~~ 387 (394)
T KOG2113|consen 339 GLMSSLKGTSAGFGLLSTIWSGGNMNLSPGSLASA-------------SASPTSSTCDHNDH 387 (394)
T ss_pred cchhhcccccccCceeeeEeecCCcccChhhhhhc-------------ccCCccccccccce
Confidence 4456788999998776666669998 689999742 36788999966543
No 145
>PF01363 FYVE: FYVE zinc finger; InterPro: IPR000306 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The FYVE zinc finger is named after four proteins that it has been found in: Fab1, YOTB/ZK632.12, Vac1, and EEA1. The FYVE finger has been shown to bind two zinc ions []. The FYVE finger has eight potential zinc coordinating cysteine positions. Many members of this family also include two histidines in a motif R+HHC+XCG, where + represents a charged residue and X any residue. FYVE-type domains are divided into two known classes: FYVE domains that specifically bind to phosphatidylinositol 3-phosphate in lipid bilayers and FYVE-related domains of undetermined function []. Those that bind to phosphatidylinositol 3-phosphate are often found in proteins targeted to lipid membranes that are involved in regulating membrane traffic [, , ]. Most FYVE domains target proteins to endosomes by binding specifically to phosphatidylinositol-3-phosphate at the membrane surface. By contrast, the CARP2 FYVE-like domain is not optimized to bind to phosphoinositides or insert into lipid bilayers. FYVE domains are distinguished from other zinc fingers by three signature sequences: an N-terminal WxxD motif, a basic R(R/K)HHCR patch, and a C-terminal RVC motif. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0046872 metal ion binding; PDB: 1HYI_A 1JOC_B 1HYJ_A 1DVP_A 3ZYQ_A 4AVX_A 1VFY_A 3T7L_A 1X4U_A 1WFK_A ....
Probab=39.26 E-value=8.5 Score=27.08 Aligned_cols=32 Identities=19% Similarity=0.457 Sum_probs=16.5
Q ss_pred cCceeccccccCCCcE---E-ccCCCcchHHhHHHH
Q 021263 230 YDLTCAVCLDLVFNPY---A-LSCGHLFCKLCACSA 261 (315)
Q Consensus 230 ~~l~C~IC~~~~~~Pv---~-l~CgH~FC~~Ci~~~ 261 (315)
+.-.|.+|...|.--. . -.||+.||..|....
T Consensus 8 ~~~~C~~C~~~F~~~~rrhhCr~CG~~vC~~Cs~~~ 43 (69)
T PF01363_consen 8 EASNCMICGKKFSLFRRRHHCRNCGRVVCSSCSSQR 43 (69)
T ss_dssp G-SB-TTT--B-BSSS-EEE-TTT--EEECCCS-EE
T ss_pred CCCcCcCcCCcCCCceeeEccCCCCCEECCchhCCE
Confidence 4578999998774211 1 379999999998543
No 146
>PF06844 DUF1244: Protein of unknown function (DUF1244); InterPro: IPR009654 This family consists of several short bacterial proteins of around 100 residues in length. The function of this family is unknown.; PDB: 2O35_A 3FYB_B.
Probab=38.90 E-value=19 Score=25.53 Aligned_cols=12 Identities=25% Similarity=0.509 Sum_probs=8.8
Q ss_pred cchHHhHHHHHh
Q 021263 252 LFCKLCACSAAS 263 (315)
Q Consensus 252 ~FC~~Ci~~~~~ 263 (315)
.||+.|+.+|..
T Consensus 11 gFCRNCLskWy~ 22 (68)
T PF06844_consen 11 GFCRNCLSKWYR 22 (68)
T ss_dssp S--HHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 599999999975
No 147
>PRK14714 DNA polymerase II large subunit; Provisional
Probab=38.65 E-value=22 Score=39.25 Aligned_cols=64 Identities=16% Similarity=0.327 Sum_probs=37.5
Q ss_pred CceeccccccCCCcEEccCCCcc-----hHHhHHHHHhhhhHhcccCCCCCCCCccccccccCCCC-cHHHHHHHHHH
Q 021263 231 DLTCAVCLDLVFNPYALSCGHLF-----CKLCACSAASVMVFEGLKSASPDSKCPICREIIHISSI-GAGWQLGCKET 302 (315)
Q Consensus 231 ~l~C~IC~~~~~~Pv~l~CgH~F-----C~~Ci~~~~~~~~~~~~~~~~~~~~CP~Cr~~v~~~~~-n~~l~~lv~~~ 302 (315)
...||-|...........||... |..|=... .. . ......||.|..++..... ...++.++...
T Consensus 667 ~rkCPkCG~~t~~~fCP~CGs~te~vy~CPsCGaev------~~-d-es~a~~CP~CGtplv~~~~~~i~~~~~~~~A 736 (1337)
T PRK14714 667 RRRCPSCGTETYENRCPDCGTHTEPVYVCPDCGAEV------PP-D-ESGRVECPRCDVELTPYQRRTINVKEEYRSA 736 (1337)
T ss_pred EEECCCCCCccccccCcccCCcCCCceeCccCCCcc------CC-C-ccccccCCCCCCcccccceEEecHHHHHHHH
Confidence 48899999865554455688653 88885332 00 0 0114579999888655432 44444444433
No 148
>cd00729 rubredoxin_SM Rubredoxin, Small Modular nonheme iron binding domain containing a [Fe(SCys)4] center, present in rubrerythrin and nigerythrin and detected either N- or C-terminal to such proteins as flavin reductase, NAD(P)H-nitrite reductase, and ferredoxin-thioredoxin reductase. In rubredoxin, the iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), and believed to be involved in electron transfer. Rubrerythrins and nigerythrins are small homodimeric proteins, generally consisting of 2 domains: a rubredoxin domain C-terminal to a non-sulfur, oxo-bridged diiron site in the N-terminal rubrerythrin domain. Rubrerythrins and nigerythrins have putative peroxide activity.
Probab=38.64 E-value=20 Score=21.82 Aligned_cols=11 Identities=45% Similarity=1.029 Sum_probs=7.7
Q ss_pred CCCCCcccccc
Q 021263 275 PDSKCPICREI 285 (315)
Q Consensus 275 ~~~~CP~Cr~~ 285 (315)
....||+|.++
T Consensus 17 ~p~~CP~Cg~~ 27 (34)
T cd00729 17 APEKCPICGAP 27 (34)
T ss_pred CCCcCcCCCCc
Confidence 34579998764
No 149
>PF03833 PolC_DP2: DNA polymerase II large subunit DP2; InterPro: IPR016033 DP2 is the large subunit of a two-subunit novel archaebacterial replicative DNA polymerase first characterised for Pyrococcus furiosus. The structure of DP2 appears to be organised as a ~950 residue component separated from a ~300 residue component by a ~150 residue intein. The other subunit, DP1, has sequence similarity to the eukaryotic DNA polymerase delta small subunit. This entry represents the N-terminal ~950 residue component of DP2.; GO: 0003887 DNA-directed DNA polymerase activity; PDB: 3O59_X.
Probab=38.33 E-value=10 Score=39.83 Aligned_cols=47 Identities=21% Similarity=0.484 Sum_probs=0.0
Q ss_pred cCceeccccccCCCcEEccCCCc-----chHHhHHHHHhhhhHhcccCCCCCCCCccccccccCC
Q 021263 230 YDLTCAVCLDLVFNPYALSCGHL-----FCKLCACSAASVMVFEGLKSASPDSKCPICREIIHIS 289 (315)
Q Consensus 230 ~~l~C~IC~~~~~~Pv~l~CgH~-----FC~~Ci~~~~~~~~~~~~~~~~~~~~CP~Cr~~v~~~ 289 (315)
....||-|...-.......||-. +|..|-... ....||.|.......
T Consensus 654 ~~r~Cp~Cg~~t~~~~Cp~CG~~T~~~~~Cp~C~~~~-------------~~~~C~~C~~~~~~~ 705 (900)
T PF03833_consen 654 GRRRCPKCGKETFYNRCPECGSHTEPVYVCPDCGIEV-------------EEDECPKCGRETTSY 705 (900)
T ss_dssp -----------------------------------------------------------------
T ss_pred ecccCcccCCcchhhcCcccCCccccceecccccccc-------------CccccccccccCccc
Confidence 35789999987655555568843 699997553 345899998774443
No 150
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=38.24 E-value=33 Score=31.02 Aligned_cols=67 Identities=12% Similarity=0.031 Sum_probs=52.2
Q ss_pred ccCceeccccccCCCcEEccCCCcchHHhHHHHHhhhhHhcccCCCCCCCCccccccccCCCC--cHHHHHHHHHHHHh
Q 021263 229 EYDLTCAVCLDLVFNPYALSCGHLFCKLCACSAASVMVFEGLKSASPDSKCPICREIIHISSI--GAGWQLGCKETWQE 305 (315)
Q Consensus 229 ~~~l~C~IC~~~~~~Pv~l~CgH~FC~~Ci~~~~~~~~~~~~~~~~~~~~CP~Cr~~v~~~~~--n~~l~~lv~~~~~e 305 (315)
.+.+.|.|-.+++.+|+++|-|=++=..=|..... .-+.-=|+-|.++....+ |..|+..|..|..+
T Consensus 209 pd~lcgkIt~el~~~pvi~psgIty~ra~I~Ehl~----------rvghfdpvtr~~Lte~q~ipN~alkevIa~fl~~ 277 (284)
T KOG4642|consen 209 PDYLCGKITLELMREPVITPSGITYDRADIEEHLQ----------RVGHFDPVTRWPLTEYQLIPNLALKEVIAAFLKE 277 (284)
T ss_pred cchhhhhhhHHhhcCCccCccccchhHHHHHHHHH----------HhccCCchhcccCCHHhhccchHHHHHHHHHHHh
Confidence 35678899999999999999999999988877753 112223666777766654 99999999999875
No 151
>KOG1814 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=37.91 E-value=57 Score=31.59 Aligned_cols=26 Identities=23% Similarity=0.362 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhh
Q 021263 131 EGRVLIEYIIMNAIAIRKILKKYDKV 156 (315)
Q Consensus 131 e~~~L~~f~~lN~~~~rkilKK~dk~ 156 (315)
++.+..+|.+-.....|++-++|.++
T Consensus 324 ~~~l~~~~~~~d~a~k~ele~Ryg~r 349 (445)
T KOG1814|consen 324 LIELYLEYLEADEARKRELEKRYGKR 349 (445)
T ss_pred HHHHHHHHhhcCHHHHHHHHHHhhHH
Confidence 44556788888888888888888655
No 152
>PF13097 CENP-U: CENP-A nucleosome associated complex (NAC) subunit
Probab=37.75 E-value=2.6e+02 Score=23.89 Aligned_cols=66 Identities=20% Similarity=0.171 Sum_probs=41.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhhhhhcHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 021263 82 ELMKEASDIAGCFSSRARHLLHLHVASGMQRYVLRIRQCFKNDQTAMIEEGRVLIEYIIMNAIAIRKILKKYD 154 (315)
Q Consensus 82 ~L~~El~kv~~f~~~r~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~e~~~L~~f~~lN~~~~rkilKK~d 154 (315)
.+..+.+++..=|.++++--. -++.+..+...+.+....++.+..+|.+-..-|..-++.|=||..
T Consensus 108 VvL~~FEk~~~eYkq~ieS~~-------cr~AI~~F~~~~keqL~~~i~evq~lK~lkrkNakv~~~i~kkrq 173 (175)
T PF13097_consen 108 VVLSAFEKTALEYKQSIESKI-------CRKAINKFYSNFKEQLIEMIKEVQELKNLKRKNAKVISDINKKRQ 173 (175)
T ss_pred HHHHHHHHHHHHHHHhhccHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 344555566555555433211 122333444444455677888999999999999988888877753
No 153
>smart00064 FYVE Protein present in Fab1, YOTB, Vac1, and EEA1. The FYVE zinc finger is named after four proteins where it was first found: Fab1, YOTB/ZK632.12, Vac1, and EEA1. The FYVE finger has been shown to bind two Zn2+ ions. The FYVE finger has eight potential zinc coordinating cysteine positions. The FYVE finger is structurally related to the KOG3053 consensus Uncharacterized conserved protein [Function unknown]
Probab=35.67 E-value=46 Score=30.16 Aligned_cols=58 Identities=16% Similarity=0.300 Sum_probs=37.6
Q ss_pred CccCceeccccccCCCcEEc----cCC-----CcchHHhHHHHHhhhhHhcccCCCCCCCCccccccccC
Q 021263 228 LEYDLTCAVCLDLVFNPYAL----SCG-----HLFCKLCACSAASVMVFEGLKSASPDSKCPICREIIHI 288 (315)
Q Consensus 228 l~~~l~C~IC~~~~~~Pv~l----~Cg-----H~FC~~Ci~~~~~~~~~~~~~~~~~~~~CP~Cr~~v~~ 288 (315)
.+.+-.|=||...=.|-... ||. |-...+|+.+|.+. ...........||-|+++...
T Consensus 17 ~e~eR~CWiCF~TdeDn~~a~WV~PCrCRGt~KWVHqsCL~rWiDE---K~~~n~~q~V~C~QCqTEYii 83 (293)
T KOG3053|consen 17 QELERCCWICFATDEDNRLAAWVHPCRCRGTTKWVHQSCLSRWIDE---KQRGNPLQTVSCPQCQTEYII 83 (293)
T ss_pred cccceeEEEEeccCcccchhhhcccccccCccHHHHHHHHHHHHhH---HhcCCCCceeechhhcchhee
Confidence 34678899999876654332 554 34578999999752 111223456789999998443
No 155
>PF04423 Rad50_zn_hook: Rad50 zinc hook motif; InterPro: IPR007517 The Mre11 complex (Mre11 Rad50 Nbs1) is central to chromosomal maintenance and functions in homologous recombination, telomere maintenance and sister chromatid association. The Rad50 coiled-coil region contains a dimer interface at the apex of the coiled coils in which pairs of conserved Cys-X-X-Cys motifs form interlocking hooks that bind one Zn ion. This alignment includes the zinc hook motif and a short stretch of coiled-coil on either side.; GO: 0004518 nuclease activity, 0005524 ATP binding, 0008270 zinc ion binding, 0006281 DNA repair; PDB: 1L8D_B.
Probab=35.62 E-value=14 Score=24.83 Aligned_cols=22 Identities=14% Similarity=0.215 Sum_probs=11.3
Q ss_pred CCCccccccccCCCCcHHHHHH
Q 021263 277 SKCPICREIIHISSIGAGWQLG 298 (315)
Q Consensus 277 ~~CP~Cr~~v~~~~~n~~l~~l 298 (315)
..||+|..++.....+..+..+
T Consensus 21 ~~CPlC~r~l~~e~~~~li~~~ 42 (54)
T PF04423_consen 21 GCCPLCGRPLDEEHRQELIKKY 42 (54)
T ss_dssp EE-TTT--EE-HHHHHHHHHHH
T ss_pred CcCCCCCCCCCHHHHHHHHHHH
Confidence 3899999888776554444333
No 156
>cd00065 FYVE FYVE domain; Zinc-binding domain; targets proteins to membrane lipids via interaction with phosphatidylinositol-3-phosphate, PI3P; present in Fab1, YOTB, Vac1, and EEA1;
Probab=35.42 E-value=22 Score=23.79 Aligned_cols=30 Identities=23% Similarity=0.614 Sum_probs=20.0
Q ss_pred ceeccccccCCCc----EEccCCCcchHHhHHHH
Q 021263 232 LTCAVCLDLVFNP----YALSCGHLFCKLCACSA 261 (315)
Q Consensus 232 l~C~IC~~~~~~P----v~l~CgH~FC~~Ci~~~ 261 (315)
..|++|...|.-- .-..||+.||..|....
T Consensus 3 ~~C~~C~~~F~~~~rk~~Cr~Cg~~~C~~C~~~~ 36 (57)
T cd00065 3 SSCMGCGKPFTLTRRRHHCRNCGRIFCSKCSSNR 36 (57)
T ss_pred CcCcccCccccCCccccccCcCcCCcChHHcCCe
Confidence 3577887644421 12479999999998543
No 157
>KOG4718 consensus Non-SMC (structural maintenance of chromosomes) element 1 protein (NSE1) [Chromatin structure and dynamics]
Probab=35.30 E-value=19 Score=31.55 Aligned_cols=44 Identities=23% Similarity=0.459 Sum_probs=33.5
Q ss_pred cCceeccccccCCCcEE-ccCCCcchHHhHHHHHhhhhHhcccCCCCCCCCccccc
Q 021263 230 YDLTCAVCLDLVFNPYA-LSCGHLFCKLCACSAASVMVFEGLKSASPDSKCPICRE 284 (315)
Q Consensus 230 ~~l~C~IC~~~~~~Pv~-l~CgH~FC~~Ci~~~~~~~~~~~~~~~~~~~~CP~Cr~ 284 (315)
....|.+|..+.-.-+. -+||-.+...|+.+++. ....||.|..
T Consensus 180 nlk~Cn~Ch~LvIqg~rCg~c~i~~h~~c~qty~q-----------~~~~cphc~d 224 (235)
T KOG4718|consen 180 NLKNCNLCHCLVIQGIRCGSCNIQYHRGCIQTYLQ-----------RRDICPHCGD 224 (235)
T ss_pred HHHHHhHhHHHhheeeccCcccchhhhHHHHHHhc-----------ccCcCCchhc
Confidence 34689999997765554 46888888999999864 4678999943
No 158
>KOG1812 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=34.92 E-value=19 Score=34.79 Aligned_cols=31 Identities=29% Similarity=0.641 Sum_probs=22.6
Q ss_pred CceeccccccCC-----CcEEccCCCcchHHhHHHH
Q 021263 231 DLTCAVCLDLVF-----NPYALSCGHLFCKLCACSA 261 (315)
Q Consensus 231 ~l~C~IC~~~~~-----~Pv~l~CgH~FC~~Ci~~~ 261 (315)
-..||.|.-.+. +-++=.|||-||+.|...|
T Consensus 306 wr~CpkC~~~ie~~~GCnhm~CrC~~~fcy~C~~~~ 341 (384)
T KOG1812|consen 306 WRQCPKCKFMIELSEGCNHMTCRCGHQFCYMCGGDW 341 (384)
T ss_pred cCcCcccceeeeecCCcceEEeeccccchhhcCcch
Confidence 467999886543 3344349999999998766
No 159
>PRK03564 formate dehydrogenase accessory protein FdhE; Provisional
Probab=33.92 E-value=13 Score=34.67 Aligned_cols=32 Identities=25% Similarity=0.554 Sum_probs=15.4
Q ss_pred cCceeccccccCCCcEE-c--cCC--CcchHHhHHHH
Q 021263 230 YDLTCAVCLDLVFNPYA-L--SCG--HLFCKLCACSA 261 (315)
Q Consensus 230 ~~l~C~IC~~~~~~Pv~-l--~Cg--H~FC~~Ci~~~ 261 (315)
..-.||||.....-.+. + .=| +.+|.-|-..|
T Consensus 186 ~~~~CPvCGs~P~~s~v~~~~~~G~RyL~CslC~teW 222 (309)
T PRK03564 186 QRQFCPVCGSMPVSSVVQIGTTQGLRYLHCNLCESEW 222 (309)
T ss_pred CCCCCCCCCCcchhheeeccCCCCceEEEcCCCCCcc
Confidence 34667777765433322 1 122 23466665554
No 160
>KOG2231 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=33.48 E-value=32 Score=35.51 Aligned_cols=52 Identities=27% Similarity=0.547 Sum_probs=35.0
Q ss_pred eeccccccCCCcEEccCCC-cchHHhHHHHHhhhhHhcccCCCCCCCCccccccccCC
Q 021263 233 TCAVCLDLVFNPYALSCGH-LFCKLCACSAASVMVFEGLKSASPDSKCPICREIIHIS 289 (315)
Q Consensus 233 ~C~IC~~~~~~Pv~l~CgH-~FC~~Ci~~~~~~~~~~~~~~~~~~~~CP~Cr~~v~~~ 289 (315)
.|+||-.-..=+..-+||| ..|..|..+..- ..........||+||..+...
T Consensus 2 ~c~ic~~s~~~~~~~s~~h~~v~~~~~~R~~~-----~~~~~~~~~~~~vcr~~~~~~ 54 (669)
T KOG2231|consen 2 SCAICAFSPDFVGRGSCGHNEVCATCVVRLRF-----ELNNRKCSNECPVCRREVETK 54 (669)
T ss_pred CcceeecCccccccccccccccchhhhhhhhh-----hcccccccccCcccccceeee
Confidence 4899987666666678999 999999876521 111112356789999865443
No 161
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=33.21 E-value=32 Score=30.74 Aligned_cols=30 Identities=13% Similarity=0.186 Sum_probs=23.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021263 76 DHMFFSELMKEASDIAGCFSSRARHLLHLH 105 (315)
Q Consensus 76 ~~~Ff~~L~~El~kv~~f~~~r~~~l~~~~ 105 (315)
++.|..++..|++.+..=....+++|...+
T Consensus 30 ee~~L~e~~kE~~~L~~Er~~h~eeLrqI~ 59 (230)
T PF10146_consen 30 EEKCLEEYRKEMEELLQERMAHVEELRQIN 59 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457899999999998877777777776654
No 162
>PF00628 PHD: PHD-finger; InterPro: IPR019787 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the PHD (homeodomain) zinc finger domain [,], which is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in chromatin-mediated transcriptional regulation. The PHD finger motif is reminiscent of, but distinct from the C3HC4 type RING finger. The function of this domain is not yet known but in analogy with the LIM domain it could be involved in protein-protein interaction and be important for the assembly or activity of multicomponent complexes involved in transcriptional activation or repression. Alternatively, the interactions could be intra-molecular and be important in maintaining the structural integrity of the protein. In similarity to the RING finger and the LIM domain, the PHD finger is thought to bind two zinc ions. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0005515 protein binding; PDB: 3ZVY_A 2LGG_A 3SOW_A 3SOU_B 3ASL_A 3ASK_A 3ZVZ_B 3T6R_A 2LGK_A 3SOX_B ....
Probab=32.44 E-value=11 Score=24.76 Aligned_cols=47 Identities=26% Similarity=0.465 Sum_probs=27.0
Q ss_pred eeccccccCC-CcEEc--cCCCcchHHhHHHHHhhhhHhcccCCCCCCCCccccc
Q 021263 233 TCAVCLDLVF-NPYAL--SCGHLFCKLCACSAASVMVFEGLKSASPDSKCPICRE 284 (315)
Q Consensus 233 ~C~IC~~~~~-~Pv~l--~CgH~FC~~Ci~~~~~~~~~~~~~~~~~~~~CP~Cr~ 284 (315)
.|+||...-. +.+.. .|+..|...|+....... ........||.|+.
T Consensus 1 ~C~vC~~~~~~~~~i~C~~C~~~~H~~C~~~~~~~~-----~~~~~~w~C~~C~~ 50 (51)
T PF00628_consen 1 YCPVCGQSDDDGDMIQCDSCNRWYHQECVGPPEKAE-----EIPSGDWYCPNCRP 50 (51)
T ss_dssp EBTTTTSSCTTSSEEEBSTTSCEEETTTSTSSHSHH-----SHHSSSBSSHHHHH
T ss_pred eCcCCCCcCCCCCeEEcCCCChhhCcccCCCChhhc-----cCCCCcEECcCCcC
Confidence 4788888322 22332 688888888885432210 11123788998853
No 163
>KOG2042 consensus Ubiquitin fusion degradation protein-2 [Posttranslational modification, protein turnover, chaperones]
Probab=32.42 E-value=79 Score=34.07 Aligned_cols=69 Identities=12% Similarity=0.033 Sum_probs=55.7
Q ss_pred ccCceeccccccCCCcEEcc-CCCcchHHhHHHHHhhhhHhcccCCCCCCCCccccccccCCCC--cHHHHHHHHHHHHh
Q 021263 229 EYDLTCAVCLDLVFNPYALS-CGHLFCKLCACSAASVMVFEGLKSASPDSKCPICREIIHISSI--GAGWQLGCKETWQE 305 (315)
Q Consensus 229 ~~~l~C~IC~~~~~~Pv~l~-CgH~FC~~Ci~~~~~~~~~~~~~~~~~~~~CP~Cr~~v~~~~~--n~~l~~lv~~~~~e 305 (315)
.+++.=|+-..++.|||.+| -|++.|++=|.+.+- ....=|.||.++....+ |-.++.-+..|..+
T Consensus 868 pdef~DPlm~Tlm~dPV~LP~Srv~vDRsti~rhlL-----------s~~tdPFNR~pLt~d~v~pn~eLK~kI~~~~~e 936 (943)
T KOG2042|consen 868 PDEFLDPLMSTLMSDPVVLPSSRVTVDRSTIERHLL-----------SDCTDPFNREPLTEDMVSPNEELKAKIRCWIKE 936 (943)
T ss_pred chhhhCccccccCCCCccCCcccccccHHHHHHHHh-----------cCCCCccccccCchhhcCCCHHHHHHHHHHHHH
Confidence 34566678888899999998 999999998877742 34445899999998876 99999999999887
Q ss_pred ccc
Q 021263 306 YMR 308 (315)
Q Consensus 306 ~~~ 308 (315)
+.+
T Consensus 937 k~~ 939 (943)
T KOG2042|consen 937 KRN 939 (943)
T ss_pred hhh
Confidence 765
No 164
>KOG3799 consensus Rab3 effector RIM1 and related proteins, contain Rab3a binding domain [Intracellular trafficking, secretion, and vesicular transport]
Probab=32.42 E-value=22 Score=28.84 Aligned_cols=24 Identities=38% Similarity=0.984 Sum_probs=15.4
Q ss_pred ccCceecccccc-CCCcEEccCCCcchHHh
Q 021263 229 EYDLTCAVCLDL-VFNPYALSCGHLFCKLC 257 (315)
Q Consensus 229 ~~~l~C~IC~~~-~~~Pv~l~CgH~FC~~C 257 (315)
.++-+|.||... |.| .|||. |..|
T Consensus 63 ~ddatC~IC~KTKFAD----G~GH~-C~YC 87 (169)
T KOG3799|consen 63 GDDATCGICHKTKFAD----GCGHN-CSYC 87 (169)
T ss_pred CcCcchhhhhhccccc----ccCcc-cchh
Confidence 367889999975 333 47773 4444
No 165
>PF15389 DUF4612: Domain of unknown function (DUF4612)
Probab=32.32 E-value=35 Score=27.05 Aligned_cols=18 Identities=17% Similarity=0.198 Sum_probs=14.0
Q ss_pred hhhhhhHHHHHHHHHHHH
Q 021263 72 CQLCDHMFFSELMKEASD 89 (315)
Q Consensus 72 ~~~~~~~Ff~~L~~El~k 89 (315)
+..-..+||++||.-|++
T Consensus 87 iS~SQqdFFRMLDeKIek 104 (115)
T PF15389_consen 87 ISESQQDFFRMLDEKIEK 104 (115)
T ss_pred hhHHHHHHHHHHHHHHHc
Confidence 344567999999998876
No 166
>PLN02189 cellulose synthase
Probab=31.10 E-value=36 Score=36.93 Aligned_cols=47 Identities=21% Similarity=0.582 Sum_probs=33.2
Q ss_pred CceeccccccCC-----CcEE--ccCCCcchHHhHHHHHhhhhHhcccCCCCCCCCcccccccc
Q 021263 231 DLTCAVCLDLVF-----NPYA--LSCGHLFCKLCACSAASVMVFEGLKSASPDSKCPICREIIH 287 (315)
Q Consensus 231 ~l~C~IC~~~~~-----~Pv~--l~CgH~FC~~Ci~~~~~~~~~~~~~~~~~~~~CP~Cr~~v~ 287 (315)
.-.|.||.+.+- +|.. -.||--.|..|.+-- ...+...||-|++.+.
T Consensus 34 ~~~C~iCgd~vg~~~~g~~fvaC~~C~fpvCr~Cyeye----------r~eg~q~CpqCkt~Y~ 87 (1040)
T PLN02189 34 GQVCEICGDEIGLTVDGDLFVACNECGFPVCRPCYEYE----------RREGTQNCPQCKTRYK 87 (1040)
T ss_pred CccccccccccCcCCCCCEEEeeccCCCccccchhhhh----------hhcCCccCcccCCchh
Confidence 458999998754 2322 248888899998321 2357889999998865
No 167
>PLN02400 cellulose synthase
Probab=31.02 E-value=35 Score=37.19 Aligned_cols=47 Identities=21% Similarity=0.530 Sum_probs=33.7
Q ss_pred CceeccccccCC-----CcEE--ccCCCcchHHhHHHHHhhhhHhcccCCCCCCCCcccccccc
Q 021263 231 DLTCAVCLDLVF-----NPYA--LSCGHLFCKLCACSAASVMVFEGLKSASPDSKCPICREIIH 287 (315)
Q Consensus 231 ~l~C~IC~~~~~-----~Pv~--l~CgH~FC~~Ci~~~~~~~~~~~~~~~~~~~~CP~Cr~~v~ 287 (315)
.-.|.||.+..- +|-. -.|+--.|+.|-+ .....+...||-|++.+.
T Consensus 36 gqiCqICGD~VG~t~dGe~FVAC~eCaFPVCRpCYE----------YERkeGnq~CPQCkTrYk 89 (1085)
T PLN02400 36 GQICQICGDDVGVTETGDVFVACNECAFPVCRPCYE----------YERKDGTQCCPQCKTRYR 89 (1085)
T ss_pred CceeeecccccCcCCCCCEEEEEccCCCccccchhh----------eecccCCccCcccCCccc
Confidence 458999998644 3332 2588889999973 223457889999998866
No 168
>PLN02436 cellulose synthase A
Probab=30.81 E-value=36 Score=37.00 Aligned_cols=47 Identities=23% Similarity=0.645 Sum_probs=33.2
Q ss_pred CceeccccccCC-----CcEEc--cCCCcchHHhHHHHHhhhhHhcccCCCCCCCCcccccccc
Q 021263 231 DLTCAVCLDLVF-----NPYAL--SCGHLFCKLCACSAASVMVFEGLKSASPDSKCPICREIIH 287 (315)
Q Consensus 231 ~l~C~IC~~~~~-----~Pv~l--~CgH~FC~~Ci~~~~~~~~~~~~~~~~~~~~CP~Cr~~v~ 287 (315)
.-.|.||.+.+- +|-.. .||--.|..|.+-- ...+...||-|++.+.
T Consensus 36 ~~iCqICGD~Vg~t~dGe~FVACn~C~fpvCr~Cyeye----------r~eg~~~Cpqckt~Y~ 89 (1094)
T PLN02436 36 GQTCQICGDEIELTVDGEPFVACNECAFPVCRPCYEYE----------RREGNQACPQCKTRYK 89 (1094)
T ss_pred CccccccccccCcCCCCCEEEeeccCCCccccchhhhh----------hhcCCccCcccCCchh
Confidence 458999998653 23222 48888999998321 2357889999998865
No 169
>KOG1729 consensus FYVE finger containing protein [General function prediction only]
Probab=30.44 E-value=19 Score=33.31 Aligned_cols=56 Identities=25% Similarity=0.415 Sum_probs=34.4
Q ss_pred ccCceeccccccCCCcEE-----ccCCCcchHHhHHHHHhhhhHhcccCCCCCCCCccccccccC
Q 021263 229 EYDLTCAVCLDLVFNPYA-----LSCGHLFCKLCACSAASVMVFEGLKSASPDSKCPICREIIHI 288 (315)
Q Consensus 229 ~~~l~C~IC~~~~~~Pv~-----l~CgH~FC~~Ci~~~~~~~~~~~~~~~~~~~~CP~Cr~~v~~ 288 (315)
.+...|.+|.-..+.... -.||++||..|-...+. .+....+....|+.|-..+..
T Consensus 166 ~ea~~C~~C~~~~Ftl~~RRHHCR~CG~ivC~~Cs~n~~~----l~~~~~k~~rvC~~CF~el~~ 226 (288)
T KOG1729|consen 166 SEATECMVCGCTEFTLSERRHHCRNCGDIVCAPCSRNRFL----LPNLSTKPIRVCDICFEELEK 226 (288)
T ss_pred ccceecccCCCccccHHHHHHHHHhcchHhhhhhhcCccc----ccccCCCCceecHHHHHHHhc
Confidence 456889999985443322 27999999999654321 111112334479999766643
No 170
>PF04710 Pellino: Pellino; InterPro: IPR006800 Pellino is involved in Toll-like signalling pathways, and associates with the kinase domain of the Pelle Ser/Thr kinase [, , ].; PDB: 3EGB_B 3EGA_A.
Probab=30.30 E-value=17 Score=34.92 Aligned_cols=49 Identities=24% Similarity=0.563 Sum_probs=0.0
Q ss_pred CceeccccccCC-------------Cc-EEccCCCcchHHhHHHHHhhhhHhcccCCCCCCCCcccccccc
Q 021263 231 DLTCAVCLDLVF-------------NP-YALSCGHLFCKLCACSAASVMVFEGLKSASPDSKCPICREIIH 287 (315)
Q Consensus 231 ~l~C~IC~~~~~-------------~P-v~l~CgH~FC~~Ci~~~~~~~~~~~~~~~~~~~~CP~Cr~~v~ 287 (315)
..+|||=+..+. .| |.+.|||.+-..= |-. .. ........||+||..-.
T Consensus 277 rpQCPVglnTL~fp~~~~~~~~~~~qP~VYl~CGHVhG~h~---Wg~----~~-~~~~~~r~CPlCr~~g~ 339 (416)
T PF04710_consen 277 RPQCPVGLNTLVFPSKSRKDVPDERQPWVYLNCGHVHGYHN---WGQ----DS-DRDPRSRTCPLCRQVGP 339 (416)
T ss_dssp -----------------------------------------------------------------------
T ss_pred CCCCCcCCCccccccccccccccccCceeeccccceeeecc---ccc----cc-ccccccccCCCccccCC
Confidence 367887665444 23 3478999765532 210 00 00123688999998743
No 171
>PRK14559 putative protein serine/threonine phosphatase; Provisional
Probab=30.26 E-value=23 Score=36.56 Aligned_cols=7 Identities=29% Similarity=0.719 Sum_probs=4.1
Q ss_pred eeccccc
Q 021263 233 TCAVCLD 239 (315)
Q Consensus 233 ~C~IC~~ 239 (315)
.||-|..
T Consensus 3 ~Cp~Cg~ 9 (645)
T PRK14559 3 ICPQCQF 9 (645)
T ss_pred cCCCCCC
Confidence 4666654
No 172
>PF13719 zinc_ribbon_5: zinc-ribbon domain
Probab=30.24 E-value=24 Score=21.78 Aligned_cols=13 Identities=31% Similarity=0.639 Sum_probs=8.0
Q ss_pred ceeccccccCCCc
Q 021263 232 LTCAVCLDLVFNP 244 (315)
Q Consensus 232 l~C~IC~~~~~~P 244 (315)
.+||-|...|.-|
T Consensus 3 i~CP~C~~~f~v~ 15 (37)
T PF13719_consen 3 ITCPNCQTRFRVP 15 (37)
T ss_pred EECCCCCceEEcC
Confidence 4677777665544
No 173
>KOG4451 consensus Uncharacterized conserved protein (tumor-associated antigen HCA127 in humans) [Function unknown]
Probab=29.61 E-value=39 Score=30.02 Aligned_cols=28 Identities=18% Similarity=0.487 Sum_probs=20.4
Q ss_pred cchHHhHHHHHhhhhHhcccCCCCCCCCccccccccCCC
Q 021263 252 LFCKLCACSAASVMVFEGLKSASPDSKCPICREIIHISS 290 (315)
Q Consensus 252 ~FC~~Ci~~~~~~~~~~~~~~~~~~~~CP~Cr~~v~~~~ 290 (315)
.-|.+|-++.. ++.+.||+|+.....+.
T Consensus 250 K~ClsChqqIH-----------RNAPiCPlCKaKsRSrN 277 (286)
T KOG4451|consen 250 KVCLSCHQQIH-----------RNAPICPLCKAKSRSRN 277 (286)
T ss_pred hHHHHHHHHHh-----------cCCCCCcchhhccccCC
Confidence 35788887663 47889999988765543
No 174
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=28.83 E-value=38 Score=35.39 Aligned_cols=33 Identities=24% Similarity=0.491 Sum_probs=23.8
Q ss_pred CceeccccccCCCc--EEccCCCcchHHhHHHHHh
Q 021263 231 DLTCAVCLDLVFNP--YALSCGHLFCKLCACSAAS 263 (315)
Q Consensus 231 ~l~C~IC~~~~~~P--v~l~CgH~FC~~Ci~~~~~ 263 (315)
.+.|.+|--...-- +...|||....+|...||+
T Consensus 1028 ~~~C~~C~l~V~gss~~Cg~C~Hv~H~sc~~eWf~ 1062 (1081)
T KOG0309|consen 1028 TFQCAICHLAVRGSSNFCGTCGHVGHTSCMMEWFR 1062 (1081)
T ss_pred eeeeeeEeeEeeccchhhccccccccHHHHHHHHh
Confidence 46677775544322 2357999999999999987
No 175
>TIGR02098 MJ0042_CXXC MJ0042 family finger-like domain. This domain contains a CXXCX(19)CXXC motif suggestive of both zinc fingers and thioredoxin, usually found at the N-terminus of prokaryotic proteins. One partially characterized gene, agmX, is among a large set in Myxococcus whose interruption affects adventurous gliding motility.
Probab=27.17 E-value=26 Score=21.47 Aligned_cols=12 Identities=17% Similarity=0.573 Sum_probs=8.3
Q ss_pred CCCCCccccccc
Q 021263 275 PDSKCPICREII 286 (315)
Q Consensus 275 ~~~~CP~Cr~~v 286 (315)
....||.|...+
T Consensus 24 ~~v~C~~C~~~~ 35 (38)
T TIGR02098 24 GKVRCGKCGHVW 35 (38)
T ss_pred CEEECCCCCCEE
Confidence 356788887664
No 176
>KOG2462 consensus C2H2-type Zn-finger protein [Transcription]
Probab=26.04 E-value=34 Score=31.30 Aligned_cols=57 Identities=18% Similarity=0.371 Sum_probs=36.4
Q ss_pred cCceeccccccCC-Cc--------EEccCCCcchHHhHHHHHhhhhHhccc---CCCCCCCCccccccccCC
Q 021263 230 YDLTCAVCLDLVF-NP--------YALSCGHLFCKLCACSAASVMVFEGLK---SASPDSKCPICREIIHIS 289 (315)
Q Consensus 230 ~~l~C~IC~~~~~-~P--------v~l~CgH~FC~~Ci~~~~~~~~~~~~~---~~~~~~~CP~Cr~~v~~~ 289 (315)
-...|++|...+. -| -+++|...+|..-..+-|= +++.- .....+.||.|+..+.++
T Consensus 160 ka~~C~~C~K~YvSmpALkMHirTH~l~c~C~iCGKaFSRPWL---LQGHiRTHTGEKPF~C~hC~kAFADR 228 (279)
T KOG2462|consen 160 KAFSCKYCGKVYVSMPALKMHIRTHTLPCECGICGKAFSRPWL---LQGHIRTHTGEKPFSCPHCGKAFADR 228 (279)
T ss_pred ccccCCCCCceeeehHHHhhHhhccCCCcccccccccccchHH---hhcccccccCCCCccCCcccchhcch
Confidence 4578888987655 23 2257888888877765543 22221 124578999998876655
No 177
>smart00647 IBR In Between Ring fingers. the domains occurs between pairs og RING fingers
Probab=25.91 E-value=18 Score=24.56 Aligned_cols=14 Identities=36% Similarity=0.878 Sum_probs=11.8
Q ss_pred cCCCcchHHhHHHH
Q 021263 248 SCGHLFCKLCACSA 261 (315)
Q Consensus 248 ~CgH~FC~~Ci~~~ 261 (315)
.||+.||..|...|
T Consensus 45 ~C~~~fC~~C~~~~ 58 (64)
T smart00647 45 KCGFSFCFRCKVPW 58 (64)
T ss_pred CCCCeECCCCCCcC
Confidence 58999999997665
No 178
>TIGR00622 ssl1 transcription factor ssl1. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=24.90 E-value=73 Score=25.13 Aligned_cols=41 Identities=24% Similarity=0.491 Sum_probs=27.1
Q ss_pred ceeccccccCCCcE--------------EccCCCcchHHhHHHHHhhhhHhcccCCCCCCCCcccc
Q 021263 232 LTCAVCLDLVFNPY--------------ALSCGHLFCKLCACSAASVMVFEGLKSASPDSKCPICR 283 (315)
Q Consensus 232 l~C~IC~~~~~~Pv--------------~l~CgH~FC~~Ci~~~~~~~~~~~~~~~~~~~~CP~Cr 283 (315)
..|--|+..|.++. -..|++.||.+|=.=+ ......||-|.
T Consensus 56 ~~C~~C~~~f~~~~~~~~~~~~~~~~y~C~~C~~~FC~dCD~fi-----------He~Lh~CPGC~ 110 (112)
T TIGR00622 56 RFCFGCQGPFPKPPVSPFDELKDSHRYVCAVCKNVFCVDCDVFV-----------HESLHCCPGCI 110 (112)
T ss_pred CcccCcCCCCCCcccccccccccccceeCCCCCCccccccchhh-----------hhhccCCcCCC
Confidence 34778877665431 2469999999994322 13556799985
No 179
>COG4647 AcxC Acetone carboxylase, gamma subunit [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=24.80 E-value=36 Score=27.46 Aligned_cols=10 Identities=40% Similarity=0.873 Sum_probs=8.3
Q ss_pred ccCCCcchHH
Q 021263 247 LSCGHLFCKL 256 (315)
Q Consensus 247 l~CgH~FC~~ 256 (315)
-.|||+||..
T Consensus 73 cecghsf~d~ 82 (165)
T COG4647 73 CECGHSFGDY 82 (165)
T ss_pred EeccccccCh
Confidence 4799999974
No 180
>PLN02638 cellulose synthase A (UDP-forming), catalytic subunit
Probab=24.64 E-value=58 Score=35.53 Aligned_cols=47 Identities=23% Similarity=0.606 Sum_probs=33.3
Q ss_pred CceeccccccCC-----CcEE--ccCCCcchHHhHHHHHhhhhHhcccCCCCCCCCcccccccc
Q 021263 231 DLTCAVCLDLVF-----NPYA--LSCGHLFCKLCACSAASVMVFEGLKSASPDSKCPICREIIH 287 (315)
Q Consensus 231 ~l~C~IC~~~~~-----~Pv~--l~CgH~FC~~Ci~~~~~~~~~~~~~~~~~~~~CP~Cr~~v~ 287 (315)
.-.|.||.+..- +|-. -.||--.|+.|-+ + ....+...||-|++.+.
T Consensus 17 ~qiCqICGD~vg~~~~Ge~FVAC~eC~FPVCrpCYE-Y---------Er~eG~q~CPqCktrYk 70 (1079)
T PLN02638 17 GQVCQICGDNVGKTVDGEPFVACDVCAFPVCRPCYE-Y---------ERKDGNQSCPQCKTKYK 70 (1079)
T ss_pred CceeeecccccCcCCCCCEEEEeccCCCccccchhh-h---------hhhcCCccCCccCCchh
Confidence 458999998644 3322 2588889999973 2 12357889999998865
No 181
>KOG0314 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=24.61 E-value=34 Score=33.57 Aligned_cols=36 Identities=28% Similarity=0.647 Sum_probs=29.2
Q ss_pred ccCccCceeccc-cccCCCcEEc--cCCCcchHHhHHHH
Q 021263 226 IKLEYDLTCAVC-LDLVFNPYAL--SCGHLFCKLCACSA 261 (315)
Q Consensus 226 ~~l~~~l~C~IC-~~~~~~Pv~l--~CgH~FC~~Ci~~~ 261 (315)
..+.+.+.|++| ...+.+...+ .|..+||..||.+.
T Consensus 214 ~~~~e~~~c~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~ 252 (448)
T KOG0314|consen 214 GELPEGLQCPLCGKEVMLDAALLSKCCLKSFCDKCIRDA 252 (448)
T ss_pred ccCCccccCceecchhhHHHHHhhhhhcccCCccccccc
Confidence 345688999999 7778887776 48899999999765
No 182
>KOG3476 consensus Microtubule-associated protein CRIPT [Cytoskeleton]
Probab=24.34 E-value=12 Score=28.02 Aligned_cols=39 Identities=31% Similarity=0.789 Sum_probs=29.1
Q ss_pred CceeccccccCCCcEEccCCCcchHHhHHHHHhhhhHhcccCCCCCCCCccccccccCC
Q 021263 231 DLTCAVCLDLVFNPYALSCGHLFCKLCACSAASVMVFEGLKSASPDSKCPICREIIHIS 289 (315)
Q Consensus 231 ~l~C~IC~~~~~~Pv~l~CgH~FC~~Ci~~~~~~~~~~~~~~~~~~~~CP~Cr~~v~~~ 289 (315)
.-.|-||......| |-.||..|.. ....|..|...+..+
T Consensus 54 ~~kC~iCk~~vHQ~-----GshYC~tCAY---------------~KgiCAMCGKki~nT 92 (100)
T KOG3476|consen 54 LAKCRICKQLVHQP-----GSHYCQTCAY---------------KKGICAMCGKKILNT 92 (100)
T ss_pred cchhHHHHHHhcCC-----cchhHhHhhh---------------hhhHHHHhhhHhhcc
Confidence 36799999988887 6669999973 345688887766544
No 183
>PLN02195 cellulose synthase A
Probab=24.04 E-value=53 Score=35.47 Aligned_cols=47 Identities=21% Similarity=0.412 Sum_probs=33.8
Q ss_pred CceeccccccCC-----CcEE--ccCCCcchHHhHHHHHhhhhHhcccCCCCCCCCcccccccc
Q 021263 231 DLTCAVCLDLVF-----NPYA--LSCGHLFCKLCACSAASVMVFEGLKSASPDSKCPICREIIH 287 (315)
Q Consensus 231 ~l~C~IC~~~~~-----~Pv~--l~CgH~FC~~Ci~~~~~~~~~~~~~~~~~~~~CP~Cr~~v~ 287 (315)
.-.|.||.+.+- +|-. -.|+--.|+.|-+ + ....+...||-|++.+.
T Consensus 6 ~~~c~~cgd~~~~~~~g~~fvaC~eC~~pvCrpCye-y---------er~eg~q~CpqCkt~Yk 59 (977)
T PLN02195 6 APICATCGEEVGVDSNGEAFVACHECSYPLCKACLE-Y---------EIKEGRKVCLRCGGPYD 59 (977)
T ss_pred CccceecccccCcCCCCCeEEEeccCCCccccchhh-h---------hhhcCCccCCccCCccc
Confidence 347999998543 3433 2688889999973 2 12357889999999887
No 184
>PF13717 zinc_ribbon_4: zinc-ribbon domain
Probab=23.08 E-value=48 Score=20.36 Aligned_cols=11 Identities=27% Similarity=0.528 Sum_probs=5.4
Q ss_pred ceeccccccCC
Q 021263 232 LTCAVCLDLVF 242 (315)
Q Consensus 232 l~C~IC~~~~~ 242 (315)
++||-|...+.
T Consensus 3 i~Cp~C~~~y~ 13 (36)
T PF13717_consen 3 ITCPNCQAKYE 13 (36)
T ss_pred EECCCCCCEEe
Confidence 34555554443
No 185
>PF05502 Dynactin_p62: Dynactin p62 family; InterPro: IPR008603 Dynactin is a multi-subunit complex and a required cofactor for most, or all, o f the cellular processes powered by the microtubule-based motor cytoplasmic dyn ein. p62 binds directly to the Arp1 subunit of dynactin [, ].
Probab=22.89 E-value=35 Score=34.06 Aligned_cols=11 Identities=36% Similarity=0.600 Sum_probs=5.7
Q ss_pred CceeccccccC
Q 021263 231 DLTCAVCLDLV 241 (315)
Q Consensus 231 ~l~C~IC~~~~ 241 (315)
..-||-|++.+
T Consensus 26 ~~yCp~CL~~~ 36 (483)
T PF05502_consen 26 SYYCPNCLFEV 36 (483)
T ss_pred eeECccccccC
Confidence 45555555543
No 186
>KOG3726 consensus Uncharacterized conserved protein [Function unknown]
Probab=22.87 E-value=45 Score=34.38 Aligned_cols=39 Identities=23% Similarity=0.420 Sum_probs=26.3
Q ss_pred ceeccccccCCCc-----EEccCCCcchHHhHHHHHhhhhHhcccCCCCCCCCcccccc
Q 021263 232 LTCAVCLDLVFNP-----YALSCGHLFCKLCACSAASVMVFEGLKSASPDSKCPICREI 285 (315)
Q Consensus 232 l~C~IC~~~~~~P-----v~l~CgH~FC~~Ci~~~~~~~~~~~~~~~~~~~~CP~Cr~~ 285 (315)
-+|-+|+. +++| .++.|+-.||.+|.... ...||+|.-.
T Consensus 655 r~C~vcq~-pedse~~v~rt~~C~~~~C~~c~~~~--------------~~~~~vC~~~ 698 (717)
T KOG3726|consen 655 RTCKVCQL-PEDSETDVCRTTFCYTPYCVACSLDY--------------ASISEVCGPD 698 (717)
T ss_pred HHHHHhcC-CcCccccccCccccCCcchHhhhhhh--------------hccCcccCch
Confidence 46777864 4443 34579999999997443 4569999533
No 187
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=22.83 E-value=63 Score=31.56 Aligned_cols=45 Identities=24% Similarity=0.343 Sum_probs=36.6
Q ss_pred ceeccccccCCCcEEc-cCCCcchHHhHHHHHhhhhHhcccCCCCCCCCcccccccc
Q 021263 232 LTCAVCLDLVFNPYAL-SCGHLFCKLCACSAASVMVFEGLKSASPDSKCPICREIIH 287 (315)
Q Consensus 232 l~C~IC~~~~~~Pv~l-~CgH~FC~~Ci~~~~~~~~~~~~~~~~~~~~CP~Cr~~v~ 287 (315)
+.|.|-.++..+||.- .-||.|=++-|.++.+ ..+.||+-..++.
T Consensus 1 m~CaISgEvP~~PVvS~~Sg~vfEkrLIEqyI~-----------e~G~DPIt~~pLs 46 (506)
T KOG0289|consen 1 MVCAISGEVPEEPVVSPVSGHVFEKRLIEQYIA-----------ETGKDPITNEPLS 46 (506)
T ss_pred CeecccCCCCCCccccccccchHHHHHHHHHHH-----------HcCCCCCCCCcCC
Confidence 3699999999999985 4999999999999865 5667887766633
No 188
>PF01428 zf-AN1: AN1-like Zinc finger; InterPro: IPR000058 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the AN1-type zinc finger domain, which has a dimetal (zinc)-bound alpha/beta fold. This domain was first identified as a zinc finger at the C terminus of AN1 Q91889 from SWISSPROT, a ubiquitin-like protein in Xenopus laevis []. The AN1-type zinc finger contains six conserved cysteines and two histidines that could potentially coordinate 2 zinc atoms. Certain stress-associated proteins (SAP) contain AN1 domain, often in combination with A20 zinc finger domains (SAP8) or C2H2 domains (SAP16) []. For example, the human protein Znf216 has an A20 zinc-finger at the N terminus and an AN1 zinc-finger at the C terminus, acting to negatively regulate the NFkappaB activation pathway and to interact with components of the immune response like RIP, IKKgamma and TRAF6. The interact of Znf216 with IKK-gamma and RIP is mediated by the A20 zinc-finger domain, while its interaction with TRAF6 is mediated by the AN1 zinc-finger domain; therefore, both zinc-finger domains are involved in regulating the immune response []. The AN1 zinc finger domain is also found in proteins containing a ubiquitin-like domain, which are involved in the ubiquitination pathway []. Proteins containing an AN1-type zinc finger include: Ascidian posterior end mark 6 (pem-6) protein []. Human AWP1 protein (associated with PRK1), which is expressed during early embryogenesis []. Human immunoglobulin mu binding protein 2 (SMUBP-2), mutations in which cause muscular atrophy with respiratory distress type 1 []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 1WFP_A 1WYS_A 1WG2_A 1WFH_A 1X4W_A 1WFE_A 1WFL_A 1X4V_A.
Probab=22.80 E-value=42 Score=21.39 Aligned_cols=25 Identities=32% Similarity=0.816 Sum_probs=13.2
Q ss_pred ecc--ccccCCCcEEc-cCCCcchHHhH
Q 021263 234 CAV--CLDLVFNPYAL-SCGHLFCKLCA 258 (315)
Q Consensus 234 C~I--C~~~~~~Pv~l-~CgH~FC~~Ci 258 (315)
|.+ |......|+.= .|+..||..-.
T Consensus 1 C~~~~C~~~~~~~~~C~~C~~~FC~~Hr 28 (43)
T PF01428_consen 1 CSFPGCKKKDFLPFKCKHCGKSFCLKHR 28 (43)
T ss_dssp -SSTTT--BCTSHEE-TTTS-EE-TTTH
T ss_pred CccCcCcCccCCCeECCCCCcccCcccc
Confidence 444 77766677774 49999998643
No 189
>PF09297 zf-NADH-PPase: NADH pyrophosphatase zinc ribbon domain; InterPro: IPR015376 This domain has a zinc ribbon structure and is often found between two NUDIX domains.; GO: 0016787 hydrolase activity, 0046872 metal ion binding; PDB: 1VK6_A 2GB5_A.
Probab=22.79 E-value=23 Score=21.00 Aligned_cols=28 Identities=25% Similarity=0.636 Sum_probs=13.5
Q ss_pred CcchHHhHHHHHhhhhHhcccCCCCCCCCcccccc
Q 021263 251 HLFCKLCACSAASVMVFEGLKSASPDSKCPICREI 285 (315)
Q Consensus 251 H~FC~~Ci~~~~~~~~~~~~~~~~~~~~CP~Cr~~ 285 (315)
|.||..|=.... ....+....||.|...
T Consensus 3 ~rfC~~CG~~t~-------~~~~g~~r~C~~Cg~~ 30 (32)
T PF09297_consen 3 HRFCGRCGAPTK-------PAPGGWARRCPSCGHE 30 (32)
T ss_dssp TSB-TTT--BEE-------E-SSSS-EEESSSS-E
T ss_pred CcccCcCCcccc-------CCCCcCEeECCCCcCE
Confidence 778888864321 1222455778888754
No 190
>smart00154 ZnF_AN1 AN1-like Zinc finger. Zinc finger at the C-terminus of An1, a ubiquitin-like protein in Xenopus laevis.
Probab=22.52 E-value=58 Score=20.42 Aligned_cols=23 Identities=35% Similarity=0.768 Sum_probs=14.6
Q ss_pred eccccccCCC-cEEcc-CCCcchHH
Q 021263 234 CAVCLDLVFN-PYALS-CGHLFCKL 256 (315)
Q Consensus 234 C~IC~~~~~~-Pv~l~-CgH~FC~~ 256 (315)
|.+|.....- |..=. |+..||..
T Consensus 1 C~~C~~~~~l~~f~C~~C~~~FC~~ 25 (39)
T smart00154 1 CHFCRKKVGLTGFKCRHCGNLFCGE 25 (39)
T ss_pred CcccCCcccccCeECCccCCccccc
Confidence 5566665444 66644 88888873
No 191
>PF00036 EF-hand_1: EF hand; InterPro: IPR018248 Many calcium-binding proteins belong to the same evolutionary family and share a type of calcium-binding domain known as the EF-hand. This type of domain consists of a twelve residue loop flanked on both sides by a twelve residue alpha-helical domain. In an EF-hand loop the calcium ion is coordinated in a pentagonal bipyramidal configuration. The six residues involved in the binding are in positions 1, 3, 5, 7, 9 and 12; these residues are denoted by X, Y, Z, -Y, -X and -Z. The invariant Glu or Asp at position 12 provides two oxygens for liganding Ca (bidentate ligand).; PDB: 1BJF_A 1XFW_R 1XFV_O 2K0J_A 2F3Z_A 3BYA_A 1XFU_Q 2R28_B 1ZOT_B 3G43_D ....
Probab=21.92 E-value=68 Score=18.52 Aligned_cols=16 Identities=13% Similarity=0.486 Sum_probs=14.0
Q ss_pred cCCccchHHHHHHHhh
Q 021263 21 KCSHVEYKRLKKVLKS 36 (315)
Q Consensus 21 ~~~yi~Yk~LKk~ik~ 36 (315)
+.-||+|++++.++++
T Consensus 13 ~dG~I~~~Ef~~~~~~ 28 (29)
T PF00036_consen 13 GDGKIDFEEFKEMMKK 28 (29)
T ss_dssp SSSEEEHHHHHHHHHH
T ss_pred CCCcCCHHHHHHHHHh
Confidence 6679999999999875
No 192
>PF09538 FYDLN_acid: Protein of unknown function (FYDLN_acid); InterPro: IPR012644 Members of this family are bacterial proteins with a conserved motif [KR]FYDLN, sometimes flanked by a pair of CXXC motifs, followed by a long region of low complexity sequence in which roughly half the residues are Asp and Glu, including multiple runs of five or more acidic residues. The function of members of this family is unknown.
Probab=21.73 E-value=56 Score=25.60 Aligned_cols=14 Identities=21% Similarity=0.449 Sum_probs=7.8
Q ss_pred ccCceeccccccCC
Q 021263 229 EYDLTCAVCLDLVF 242 (315)
Q Consensus 229 ~~~l~C~IC~~~~~ 242 (315)
-..-+||-|..-|.
T Consensus 7 GtKR~Cp~CG~kFY 20 (108)
T PF09538_consen 7 GTKRTCPSCGAKFY 20 (108)
T ss_pred CCcccCCCCcchhc
Confidence 34566666665444
No 193
>COG3492 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=21.65 E-value=51 Score=24.90 Aligned_cols=12 Identities=25% Similarity=0.531 Sum_probs=10.5
Q ss_pred cchHHhHHHHHh
Q 021263 252 LFCKLCACSAAS 263 (315)
Q Consensus 252 ~FC~~Ci~~~~~ 263 (315)
.||+.|+..|++
T Consensus 42 gFCRNCLs~Wy~ 53 (104)
T COG3492 42 GFCRNCLSNWYR 53 (104)
T ss_pred HHHHHHHHHHHH
Confidence 499999999975
No 194
>COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair]
Probab=20.94 E-value=46 Score=31.80 Aligned_cols=31 Identities=26% Similarity=0.586 Sum_probs=24.1
Q ss_pred ccCceeccccc-cCCCcEEccCCCcchHHhHH
Q 021263 229 EYDLTCAVCLD-LVFNPYALSCGHLFCKLCAC 259 (315)
Q Consensus 229 ~~~l~C~IC~~-~~~~Pv~l~CgH~FC~~Ci~ 259 (315)
...+.|--|.. ....-..+|||..||..|+.
T Consensus 37 ~gk~~C~RC~~~~~~~~~~lp~~~~YCr~Cl~ 68 (441)
T COG4098 37 NGKYRCNRCGNTHIELFAKLPCGCLYCRNCLM 68 (441)
T ss_pred cCcEEehhcCCcchhhhcccccceEeehhhhh
Confidence 45789999984 34444578999999999993
No 195
>smart00132 LIM Zinc-binding domain present in Lin-11, Isl-1, Mec-3. Zinc-binding domain family. Some LIM domains bind protein partners via tyrosine-containing motifs. LIM domains are found in many key regulators of developmental pathways.
Probab=20.53 E-value=65 Score=18.98 Aligned_cols=10 Identities=30% Similarity=0.541 Sum_probs=6.5
Q ss_pred eccccccCCC
Q 021263 234 CAVCLDLVFN 243 (315)
Q Consensus 234 C~IC~~~~~~ 243 (315)
|+.|.+.+.+
T Consensus 2 C~~C~~~i~~ 11 (39)
T smart00132 2 CAGCGKPIRG 11 (39)
T ss_pred ccccCCcccC
Confidence 6677776554
No 196
>PRK00420 hypothetical protein; Validated
Probab=20.47 E-value=41 Score=26.58 Aligned_cols=12 Identities=33% Similarity=0.636 Sum_probs=8.3
Q ss_pred CceeccccccCC
Q 021263 231 DLTCAVCLDLVF 242 (315)
Q Consensus 231 ~l~C~IC~~~~~ 242 (315)
...||+|...++
T Consensus 23 ~~~CP~Cg~pLf 34 (112)
T PRK00420 23 SKHCPVCGLPLF 34 (112)
T ss_pred cCCCCCCCCcce
Confidence 367999886544
No 197
>KOG3362 consensus Predicted BBOX Zn-finger protein [General function prediction only]
Probab=20.14 E-value=30 Score=28.48 Aligned_cols=28 Identities=32% Similarity=0.777 Sum_probs=20.0
Q ss_pred CceeccccccCCCcEE-ccCCCcchH-HhHHH
Q 021263 231 DLTCAVCLDLVFNPYA-LSCGHLFCK-LCACS 260 (315)
Q Consensus 231 ~l~C~IC~~~~~~Pv~-l~CgH~FC~-~Ci~~ 260 (315)
--.|.||. +..+.. +.||..+|. .|+..
T Consensus 118 r~fCaVCG--~~S~ysC~~CG~kyCsv~C~~~ 147 (156)
T KOG3362|consen 118 RKFCAVCG--YDSKYSCVNCGTKYCSVRCLKT 147 (156)
T ss_pred chhhhhcC--CCchhHHHhcCCceeechhhhh
Confidence 46799999 344444 789999986 47643
No 198
>PLN02915 cellulose synthase A [UDP-forming], catalytic subunit
Probab=20.14 E-value=75 Score=34.61 Aligned_cols=48 Identities=31% Similarity=0.614 Sum_probs=33.8
Q ss_pred cCceeccccccCC-----CcEE--ccCCCcchHHhHHHHHhhhhHhcccCCCCCCCCcccccccc
Q 021263 230 YDLTCAVCLDLVF-----NPYA--LSCGHLFCKLCACSAASVMVFEGLKSASPDSKCPICREIIH 287 (315)
Q Consensus 230 ~~l~C~IC~~~~~-----~Pv~--l~CgH~FC~~Ci~~~~~~~~~~~~~~~~~~~~CP~Cr~~v~ 287 (315)
..-.|.||.+..- +|.. -.|+--.|..|.+ + ....+...||-|++.+.
T Consensus 14 ~~~~c~iCGd~vg~~~~Ge~FVAC~eC~fpvCr~cye-y---------e~~~g~~~cp~c~t~y~ 68 (1044)
T PLN02915 14 DAKTCRVCGDEVGVKEDGQPFVACHVCGFPVCKPCYE-Y---------ERSEGNQCCPQCNTRYK 68 (1044)
T ss_pred CcchhhccccccCcCCCCCEEEEeccCCCccccchhh-h---------hhhcCCccCCccCCchh
Confidence 3567999998644 3333 2588889999983 2 12357789999998865
No 199
>PF02318 FYVE_2: FYVE-type zinc finger; InterPro: IPR003315 This entry represents the zinc-binding domain found in rabphilin Rab3A. The small G protein Rab3A plays an important role in the regulation of neurotransmitter release. The crystal structure of the small G protein Rab3A complexed with the effector domain of rabphilin-3A shows that the effector domain of rabphilin-3A contacts Rab3A in two distinct areas. The first interface involves the Rab3A switch I and switch II regions, which are sensitive to the nucleotide-binding state of Rab3A. The second interface consists of a deep pocket in Rab3A that interacts with a SGAWFF structural element of rabphilin-3A. Sequence and structure analysis, and biochemical data suggest that this pocket, or Rab complementarity-determining region (RabCDR), establishes a specific interaction between each Rab protein and its effectors. It has been suggested that RabCDRs could be major determinants of effector specificity during vesicle trafficking and fusion [].; GO: 0008270 zinc ion binding, 0017137 Rab GTPase binding, 0006886 intracellular protein transport; PDB: 2CSZ_A 2ZET_C 1ZBD_B 3BC1_B 2CJS_C 2A20_A.
Probab=20.03 E-value=56 Score=25.77 Aligned_cols=45 Identities=29% Similarity=0.668 Sum_probs=28.0
Q ss_pred CceeccccccC---CCc-E-EccCCCcchHHhHHHHHhhhhHhcccCCCCCCCCcccccc
Q 021263 231 DLTCAVCLDLV---FNP-Y-ALSCGHLFCKLCACSAASVMVFEGLKSASPDSKCPICREI 285 (315)
Q Consensus 231 ~l~C~IC~~~~---~~P-v-~l~CgH~FC~~Ci~~~~~~~~~~~~~~~~~~~~CP~Cr~~ 285 (315)
.-.|.+|...| .++ . -..|+|.+|..|-.. ........|.+|...
T Consensus 54 ~~~C~~C~~~fg~l~~~~~~C~~C~~~VC~~C~~~----------~~~~~~WlC~vC~k~ 103 (118)
T PF02318_consen 54 ERHCARCGKPFGFLFNRGRVCVDCKHRVCKKCGVY----------SKKEPIWLCKVCQKQ 103 (118)
T ss_dssp CSB-TTTS-BCSCTSTTCEEETTTTEEEETTSEEE----------TSSSCCEEEHHHHHH
T ss_pred CcchhhhCCcccccCCCCCcCCcCCccccCccCCc----------CCCCCCEEChhhHHH
Confidence 45799997643 232 2 357999999999521 122456789998654
Done!