Query 021263
Match_columns 315
No_of_seqs 289 out of 1776
Neff 7.9
Searched_HMMs 29240
Date Mon Mar 25 15:08:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021263.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/021263hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1t1h_A Gspef-atpub14, armadill 99.6 7.9E-16 2.7E-20 113.1 5.6 69 228-306 5-75 (78)
2 2kre_A Ubiquitin conjugation f 99.6 2.5E-15 8.6E-20 115.9 8.6 71 227-308 25-97 (100)
3 2kr4_A Ubiquitin conjugation f 99.6 1.6E-15 5.6E-20 113.5 6.2 69 228-307 11-81 (85)
4 3ztg_A E3 ubiquitin-protein li 99.6 2.9E-15 9.8E-20 113.6 7.6 73 226-307 8-84 (92)
5 1wgm_A Ubiquitin conjugation f 99.6 5.1E-15 1.7E-19 113.8 8.4 71 227-308 18-91 (98)
6 3fl2_A E3 ubiquitin-protein li 99.5 7E-15 2.4E-19 117.8 4.8 69 228-306 49-120 (124)
7 2y43_A E3 ubiquitin-protein li 99.5 1.2E-14 4E-19 111.8 4.6 73 226-309 17-92 (99)
8 3lrq_A E3 ubiquitin-protein li 99.5 2.1E-14 7.1E-19 110.8 3.7 72 226-307 17-91 (100)
9 1z6u_A NP95-like ring finger p 99.5 3.6E-14 1.2E-18 117.5 4.8 70 227-306 74-146 (150)
10 4ayc_A E3 ubiquitin-protein li 99.5 2.4E-14 8.1E-19 116.9 3.6 63 229-302 51-113 (138)
11 2yu4_A E3 SUMO-protein ligase 99.4 7.8E-14 2.7E-18 106.3 5.1 74 229-307 5-84 (94)
12 2c2l_A CHIP, carboxy terminus 99.4 1.2E-13 4E-18 125.1 6.2 68 229-306 206-275 (281)
13 2egp_A Tripartite motif-contai 99.4 9E-15 3.1E-19 107.5 -1.0 68 226-297 7-76 (79)
14 2ckl_A Polycomb group ring fin 99.4 7.1E-14 2.4E-18 109.2 4.0 68 226-304 10-84 (108)
15 2ecw_A Tripartite motif-contai 99.4 3E-14 1E-18 105.9 1.7 68 225-297 13-82 (85)
16 2f42_A STIP1 homology and U-bo 99.4 1.7E-13 5.9E-18 116.0 6.1 68 229-306 104-173 (179)
17 1jm7_B BARD1, BRCA1-associated 99.4 5.1E-14 1.7E-18 111.7 2.3 70 225-307 16-88 (117)
18 3l11_A E3 ubiquitin-protein li 99.4 7.1E-14 2.4E-18 110.4 2.3 69 227-305 11-88 (115)
19 2djb_A Polycomb group ring fin 99.4 2.9E-13 9.8E-18 97.8 5.2 56 225-291 9-65 (72)
20 2yur_A Retinoblastoma-binding 99.4 2.9E-13 1E-17 98.4 4.9 56 225-289 9-65 (74)
21 2ecv_A Tripartite motif-contai 99.4 5E-14 1.7E-18 104.7 0.5 67 226-297 14-82 (85)
22 2ecy_A TNF receptor-associated 99.4 3.4E-13 1.2E-17 95.7 4.8 54 227-290 11-64 (66)
23 2csy_A Zinc finger protein 183 99.4 6.4E-13 2.2E-17 98.2 6.1 49 228-287 12-60 (81)
24 2ysl_A Tripartite motif-contai 99.4 9.3E-13 3.2E-17 95.1 6.8 57 226-290 15-71 (73)
25 1jm7_A BRCA1, breast cancer ty 99.3 2.5E-13 8.4E-18 106.5 2.6 68 228-303 18-87 (112)
26 2ckl_B Ubiquitin ligase protei 99.3 5.2E-13 1.8E-17 112.1 4.3 69 227-305 50-122 (165)
27 3hct_A TNF receptor-associated 99.3 8.2E-13 2.8E-17 104.8 4.5 66 227-302 14-81 (118)
28 1rmd_A RAG1; V(D)J recombinati 99.3 9E-13 3.1E-17 104.1 3.1 66 227-302 19-87 (116)
29 2d8t_A Dactylidin, ring finger 99.3 1.7E-12 5.8E-17 93.4 4.1 50 229-289 13-62 (71)
30 2ct2_A Tripartite motif protei 99.3 3.3E-12 1.1E-16 95.5 5.2 59 225-291 9-71 (88)
31 2ysj_A Tripartite motif-contai 99.3 3.9E-12 1.3E-16 89.2 5.2 49 226-282 15-63 (63)
32 3htk_C E3 SUMO-protein ligase 99.2 4.7E-12 1.6E-16 112.3 5.7 68 229-305 179-251 (267)
33 1g25_A CDK-activating kinase a 99.2 3.8E-12 1.3E-16 89.9 4.0 52 230-291 2-58 (65)
34 2ea6_A Ring finger protein 4; 99.2 3E-12 1E-16 91.2 3.1 51 227-288 11-68 (69)
35 3ng2_A RNF4, snurf, ring finge 99.2 2.9E-12 1E-16 91.9 2.6 52 229-291 8-66 (71)
36 3knv_A TNF receptor-associated 99.2 3.6E-12 1.2E-16 104.3 3.4 51 227-287 27-77 (141)
37 2ecj_A Tripartite motif-contai 99.2 8.7E-12 3E-16 85.7 4.5 49 226-282 10-58 (58)
38 1e4u_A Transcriptional repress 99.2 1.1E-11 3.8E-16 91.0 4.8 55 227-291 7-65 (78)
39 3hcs_A TNF receptor-associated 99.2 1.5E-11 5.2E-16 103.6 4.7 66 227-302 14-81 (170)
40 2ect_A Ring finger protein 126 99.2 2.1E-11 7.3E-16 89.1 4.8 54 227-291 11-67 (78)
41 2xeu_A Ring finger protein 4; 99.1 8.3E-12 2.8E-16 87.5 1.8 51 230-291 2-59 (64)
42 2ecn_A Ring finger protein 141 99.1 1.5E-11 5.2E-16 88.0 2.6 52 227-290 11-62 (70)
43 1bor_A Transcription factor PM 99.1 2E-11 6.8E-16 83.8 2.8 48 229-290 4-51 (56)
44 2kiz_A E3 ubiquitin-protein li 99.1 4.8E-11 1.6E-15 85.1 5.0 50 229-289 12-64 (69)
45 1iym_A EL5; ring-H2 finger, ub 99.1 3.8E-11 1.3E-15 81.7 3.9 48 229-287 3-54 (55)
46 1chc_A Equine herpes virus-1 r 99.1 3.7E-11 1.3E-15 85.4 3.3 48 230-288 4-52 (68)
47 2l0b_A E3 ubiquitin-protein li 99.1 8.6E-11 2.9E-15 88.7 5.3 50 228-288 37-89 (91)
48 1x4j_A Ring finger protein 38; 99.1 6.6E-11 2.2E-15 85.9 4.2 50 229-289 21-73 (75)
49 2ecm_A Ring finger and CHY zin 99.1 4.9E-11 1.7E-15 81.1 3.2 47 230-287 4-54 (55)
50 2ep4_A Ring finger protein 24; 99.1 5.6E-11 1.9E-15 86.0 3.5 53 226-289 10-65 (74)
51 4ap4_A E3 ubiquitin ligase RNF 99.0 1.3E-10 4.3E-15 93.3 2.4 51 230-291 6-63 (133)
52 1v87_A Deltex protein 2; ring- 99.0 3.8E-10 1.3E-14 88.5 4.3 54 230-289 24-95 (114)
53 2ecg_A Baculoviral IAP repeat- 98.9 8.1E-11 2.8E-15 85.6 -0.1 48 227-289 21-69 (75)
54 4ic3_A E3 ubiquitin-protein li 98.9 3E-10 1E-14 82.4 2.4 47 227-288 20-67 (74)
55 1wim_A KIAA0161 protein; ring 98.9 3.6E-10 1.2E-14 85.8 1.8 76 230-308 4-87 (94)
56 2vje_A E3 ubiquitin-protein li 98.9 9.2E-10 3.1E-14 77.5 3.4 49 229-288 6-57 (64)
57 2y1n_A E3 ubiquitin-protein li 98.9 1.1E-09 3.6E-14 103.0 3.9 50 230-289 331-380 (389)
58 2ecl_A Ring-box protein 2; RNF 98.8 1.1E-09 3.8E-14 80.7 2.9 49 230-289 14-77 (81)
59 2vje_B MDM4 protein; proto-onc 98.8 2.3E-09 7.9E-14 75.2 3.2 48 230-288 6-56 (63)
60 4ap4_A E3 ubiquitin ligase RNF 98.8 1.6E-09 5.3E-14 86.8 1.4 52 229-291 70-128 (133)
61 2yho_A E3 ubiquitin-protein li 98.7 2.8E-09 9.5E-14 78.2 2.4 47 228-289 15-62 (79)
62 2ea5_A Cell growth regulator w 98.7 5.4E-09 1.8E-13 74.4 3.4 44 230-288 14-58 (68)
63 2bay_A PRE-mRNA splicing facto 98.7 3.9E-09 1.3E-13 73.5 2.3 50 231-291 3-53 (61)
64 3dpl_R Ring-box protein 1; ubi 98.7 1.2E-08 4.2E-13 79.0 4.3 48 230-288 36-101 (106)
65 3t6p_A Baculoviral IAP repeat- 98.5 1.7E-08 5.8E-13 94.1 1.3 47 227-288 291-338 (345)
66 4a0k_B E3 ubiquitin-protein li 98.4 4.7E-08 1.6E-12 76.9 0.2 48 230-288 47-112 (117)
67 2d8s_A Cellular modulator of i 98.3 5.5E-07 1.9E-11 66.0 4.2 51 230-289 14-71 (80)
68 2ct0_A Non-SMC element 1 homol 97.9 1.7E-05 5.7E-10 57.1 5.4 50 230-288 14-64 (74)
69 3vk6_A E3 ubiquitin-protein li 97.8 1.4E-05 4.7E-10 60.1 3.4 46 233-288 3-49 (101)
70 1vyx_A ORF K3, K3RING; zinc-bi 97.5 6.6E-05 2.3E-09 51.6 3.4 50 230-288 5-59 (60)
71 3k1l_B Fancl; UBC, ring, RWD, 97.4 5.5E-05 1.9E-09 69.4 2.6 61 229-289 306-374 (381)
72 3m62_A Ubiquitin conjugation f 97.3 0.00022 7.5E-09 73.7 6.4 74 227-311 887-963 (968)
73 2jun_A Midline-1; B-BOX, TRIM, 96.2 0.0016 5.6E-08 49.1 2.0 32 230-261 2-36 (101)
74 3nw0_A Non-structural maintena 95.3 0.015 5.2E-07 51.0 4.7 50 231-289 180-230 (238)
75 2cs3_A Protein C14ORF4, MY039 92.6 0.39 1.3E-05 34.3 6.4 34 230-263 14-51 (93)
76 3i2d_A E3 SUMO-protein ligase 90.4 0.28 9.5E-06 45.5 4.9 66 230-302 248-316 (371)
77 4fo9_A E3 SUMO-protein ligase 89.2 0.39 1.3E-05 44.4 4.9 65 230-301 214-281 (360)
78 2ko5_A Ring finger protein Z; 80.2 1 3.4E-05 33.2 2.5 48 229-289 26-74 (99)
79 2lbm_A Transcriptional regulat 68.2 8.5 0.00029 30.6 5.3 53 230-284 62-116 (142)
80 1weo_A Cellulose synthase, cat 66.8 6.7 0.00023 28.5 4.0 48 230-287 15-69 (93)
81 2lri_C Autoimmune regulator; Z 62.0 9.6 0.00033 26.0 4.0 48 230-286 11-60 (66)
82 3ql9_A Transcriptional regulat 60.8 12 0.00043 29.1 4.9 68 231-303 57-124 (129)
83 1wil_A KIAA1045 protein; ring 60.4 11 0.00037 27.2 4.0 34 228-261 12-47 (89)
84 3mjh_B Early endosome antigen 59.2 1.7 5.8E-05 25.8 -0.3 17 230-246 4-20 (34)
85 2k16_A Transcription initiatio 57.6 6.6 0.00023 27.2 2.6 52 230-288 17-71 (75)
86 1vfy_A Phosphatidylinositol-3- 55.7 5.5 0.00019 27.7 1.9 29 231-259 11-43 (73)
87 4g9i_A Hydrogenase maturation 55.7 4.1 0.00014 41.5 1.7 56 230-288 105-190 (772)
88 3ttc_A HYPF, transcriptional r 55.6 4.4 0.00015 40.5 1.8 54 230-286 16-99 (657)
89 1joc_A EEA1, early endosomal a 54.5 4.7 0.00016 31.3 1.5 30 231-260 69-102 (125)
90 2gmg_A Hypothetical protein PF 53.9 2.7 9.3E-05 31.6 0.0 28 242-285 66-93 (105)
91 3vth_A Hydrogenase maturation 51.2 5.2 0.00018 40.7 1.5 56 230-288 110-195 (761)
92 3t7l_A Zinc finger FYVE domain 50.7 7.9 0.00027 28.1 2.1 31 230-260 19-53 (90)
93 2l5u_A Chromodomain-helicase-D 50.1 13 0.00043 24.8 2.9 48 229-285 9-58 (61)
94 2lv9_A Histone-lysine N-methyl 49.9 25 0.00085 25.8 4.8 46 230-284 27-75 (98)
95 3zyq_A Hepatocyte growth facto 49.9 10 0.00034 32.4 3.0 31 230-260 163-197 (226)
96 2yw8_A RUN and FYVE domain-con 49.0 7 0.00024 27.8 1.6 31 230-260 18-52 (82)
97 2l43_A N-teminal domain from h 49.0 13 0.00044 26.8 3.0 52 229-289 23-79 (88)
98 1z2q_A LM5-1; membrane protein 48.5 12 0.0004 26.7 2.7 31 230-260 20-54 (84)
99 1z60_A TFIIH basal transcripti 47.9 16 0.00055 24.3 3.1 40 232-282 16-58 (59)
100 1dvp_A HRS, hepatocyte growth 47.2 6.1 0.00021 33.6 1.2 31 230-260 160-194 (220)
101 1x4u_A Zinc finger, FYVE domai 45.5 7.5 0.00026 27.7 1.3 30 230-259 13-46 (84)
102 1y02_A CARP2, FYVE-ring finger 43.6 6.8 0.00023 30.2 0.8 45 230-285 18-66 (120)
103 2jne_A Hypothetical protein YF 43.1 1.9 6.4E-05 31.9 -2.3 42 231-288 32-73 (101)
104 1f62_A Transcription factor WS 43.0 11 0.00037 23.9 1.6 46 233-285 2-50 (51)
105 2xqn_T Testin, TESS; metal-bin 41.6 19 0.00064 27.2 3.1 46 230-288 29-75 (126)
106 1wfk_A Zinc finger, FYVE domai 41.0 8 0.00027 28.0 0.8 31 230-260 8-42 (88)
107 3mpx_A FYVE, rhogef and PH dom 40.8 5.8 0.0002 37.1 0.0 53 230-286 374-430 (434)
108 1wd2_A Ariadne-1 protein homol 40.0 2.9 9.9E-05 28.1 -1.6 31 231-261 6-44 (60)
109 3vhs_A ATPase wrnip1; zinc fin 39.5 8.5 0.00029 21.0 0.5 21 276-296 6-26 (29)
110 2ku3_A Bromodomain-containing 37.6 26 0.0009 24.1 3.0 48 229-285 14-66 (71)
111 1m3v_A FLIN4, fusion of the LI 36.6 16 0.00053 27.7 1.9 51 230-291 31-84 (122)
112 2ct7_A Ring finger protein 31; 36.5 15 0.0005 26.3 1.6 28 234-261 28-61 (86)
113 3o36_A Transcription intermedi 34.5 11 0.00038 30.9 0.8 47 231-286 4-52 (184)
114 1x64_A Alpha-actinin-2 associa 32.6 46 0.0016 23.3 3.8 27 231-257 25-51 (89)
115 1wen_A Inhibitor of growth fam 32.4 76 0.0026 21.6 4.8 48 230-287 15-67 (71)
116 1fp0_A KAP-1 corepressor; PHD 32.0 27 0.00093 25.2 2.4 48 229-285 23-72 (88)
117 1weu_A Inhibitor of growth fam 31.5 76 0.0026 22.9 4.8 48 229-286 34-86 (91)
118 3lqh_A Histone-lysine N-methyl 31.3 21 0.00072 29.5 2.0 55 232-287 3-65 (183)
119 2ro1_A Transcription intermedi 30.8 15 0.00051 30.4 1.0 47 232-285 3-49 (189)
120 3u5n_A E3 ubiquitin-protein li 30.2 9.5 0.00033 32.0 -0.4 48 230-286 6-55 (207)
121 1mm2_A MI2-beta; PHD, zinc fin 29.6 14 0.00047 24.6 0.4 47 230-285 8-56 (61)
122 2o35_A Hypothetical protein DU 29.6 20 0.00068 26.5 1.3 12 252-263 42-53 (105)
123 3fyb_A Protein of unknown func 29.3 20 0.0007 26.4 1.3 12 252-263 41-52 (104)
124 2fiy_A Protein FDHE homolog; F 29.2 6.4 0.00022 35.5 -1.7 9 277-285 254-262 (309)
125 2yt5_A Metal-response element- 28.8 16 0.00055 24.4 0.7 54 230-287 5-63 (66)
126 2jtn_A LIM domain-binding prot 27.7 42 0.0014 27.2 3.2 46 230-288 86-131 (182)
127 2jmo_A Parkin; IBR, E3 ligase, 27.4 6.6 0.00023 27.8 -1.6 14 248-261 55-68 (80)
128 4ayb_P DNA-directed RNA polyme 27.0 9.1 0.00031 24.3 -0.8 13 275-287 22-34 (48)
129 2rgt_A Fusion of LIM/homeobox 26.1 48 0.0016 26.4 3.3 32 230-261 32-63 (169)
130 1wfp_A Zinc finger (AN1-like) 26.0 59 0.002 22.6 3.2 27 230-256 24-51 (74)
131 1zbd_B Rabphilin-3A; G protein 25.9 19 0.00067 28.1 0.8 49 230-285 54-107 (134)
132 1x62_A C-terminal LIM domain p 25.9 41 0.0014 23.0 2.5 27 231-257 15-41 (79)
133 1we9_A PHD finger family prote 25.7 16 0.00054 24.3 0.2 50 230-285 5-58 (64)
134 2cup_A Skeletal muscle LIM-pro 25.7 35 0.0012 24.4 2.2 47 230-289 32-79 (101)
135 2pv0_B DNA (cytosine-5)-methyl 25.5 30 0.001 32.1 2.0 55 230-285 92-148 (386)
136 2xjy_A Rhombotin-2; oncoprotei 25.3 45 0.0015 25.2 2.8 48 230-288 28-78 (131)
137 1wev_A Riken cDNA 1110020M19; 25.3 17 0.00058 26.1 0.3 56 229-287 14-74 (88)
138 2puy_A PHD finger protein 21A; 24.8 9.1 0.00031 25.3 -1.2 47 230-285 4-52 (60)
139 2jmi_A Protein YNG1, ING1 homo 24.0 38 0.0013 24.5 2.0 46 230-285 25-76 (90)
140 2jvx_A NF-kappa-B essential mo 24.0 18 0.00061 20.3 0.2 16 231-246 3-18 (28)
141 3pwf_A Rubrerythrin; non heme 22.4 27 0.00092 28.4 1.0 13 230-242 137-149 (170)
142 1l8d_A DNA double-strand break 22.0 22 0.00075 26.4 0.4 14 276-289 47-60 (112)
143 2zet_C Melanophilin; complex, 21.9 31 0.0011 27.6 1.3 45 231-285 68-117 (153)
144 2dar_A PDZ and LIM domain prot 21.6 72 0.0024 22.3 3.1 12 233-244 27-38 (90)
145 1erd_A Pheromone ER-2; NMR {Eu 21.5 21 0.00073 20.8 0.1 15 247-261 10-24 (40)
146 2jrp_A Putative cytoplasmic pr 21.4 7.3 0.00025 27.8 -2.3 10 232-241 3-12 (81)
147 1xwh_A Autoimmune regulator; P 21.0 15 0.0005 24.8 -0.7 47 230-285 7-55 (66)
148 3o70_A PHD finger protein 13; 21.0 35 0.0012 23.2 1.2 46 230-284 18-66 (68)
149 2yql_A PHD finger protein 21A; 20.5 14 0.00046 24.1 -1.0 46 230-284 8-55 (56)
150 1rut_X Flinc4, fusion protein 20.1 30 0.001 28.2 0.9 48 230-288 31-81 (188)
No 1
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=99.60 E-value=7.9e-16 Score=113.12 Aligned_cols=69 Identities=13% Similarity=0.198 Sum_probs=61.1
Q ss_pred CccCceeccccccCCCcEEccCCCcchHHhHHHHHhhhhHhcccCCCCCCCCccccccccCCCC--cHHHHHHHHHHHHh
Q 021263 228 LEYDLTCAVCLDLVFNPYALSCGHLFCKLCACSAASVMVFEGLKSASPDSKCPICREIIHISSI--GAGWQLGCKETWQE 305 (315)
Q Consensus 228 l~~~l~C~IC~~~~~~Pv~l~CgH~FC~~Ci~~~~~~~~~~~~~~~~~~~~CP~Cr~~v~~~~~--n~~l~~lv~~~~~e 305 (315)
+.+.+.||||++++.+|++++|||+||..||.+|+. .+...||+||.++....+ |..++++++.|...
T Consensus 5 ~~~~~~C~IC~~~~~~Pv~~~CgH~fc~~Ci~~~~~----------~~~~~CP~C~~~~~~~~l~~n~~l~~~i~~~~~~ 74 (78)
T 1t1h_A 5 FPEYFRCPISLELMKDPVIVSTGQTYERSSIQKWLD----------AGHKTCPKSQETLLHAGLTPNYVLKSLIALWCES 74 (78)
T ss_dssp CSSSSSCTTTSCCCSSEEEETTTEEEEHHHHHHHHT----------TTCCBCTTTCCBCSSCCCEECTTTHHHHHHHHHH
T ss_pred CcccCCCCCccccccCCEEcCCCCeecHHHHHHHHH----------HCcCCCCCCcCCCChhhCccCHHHHHHHHHHHHH
Confidence 457899999999999999999999999999999975 246789999999987766 99999999999875
Q ss_pred c
Q 021263 306 Y 306 (315)
Q Consensus 306 ~ 306 (315)
.
T Consensus 75 ~ 75 (78)
T 1t1h_A 75 N 75 (78)
T ss_dssp S
T ss_pred c
Confidence 3
No 2
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=99.60 E-value=2.5e-15 Score=115.93 Aligned_cols=71 Identities=11% Similarity=0.074 Sum_probs=62.7
Q ss_pred cCccCceeccccccCCCcEEccCCCcchHHhHHHHHhhhhHhcccCCCCCCCCccccccccCCCC--cHHHHHHHHHHHH
Q 021263 227 KLEYDLTCAVCLDLVFNPYALSCGHLFCKLCACSAASVMVFEGLKSASPDSKCPICREIIHISSI--GAGWQLGCKETWQ 304 (315)
Q Consensus 227 ~l~~~l~C~IC~~~~~~Pv~l~CgH~FC~~Ci~~~~~~~~~~~~~~~~~~~~CP~Cr~~v~~~~~--n~~l~~lv~~~~~ 304 (315)
.+.+.+.||||+++|.+||+++|||+||..||.+|+. ....||.|+.++....+ |..|+++|..|..
T Consensus 25 ~~p~~~~CpI~~~~m~dPV~~~cGhtf~r~~I~~~l~-----------~~~~cP~~~~~l~~~~L~pn~~Lk~~I~~~~~ 93 (100)
T 2kre_A 25 DAPDEFRDPLMDTLMTDPVRLPSGTIMDRSIILRHLL-----------NSPTDPFNRQTLTESMLEPVPELKEQIQAWMR 93 (100)
T ss_dssp SCSTTTBCTTTCSBCSSEEEETTTEEEEHHHHHHHTT-----------SCSBCSSSCCBCCTTSSEECHHHHHHHHHHHH
T ss_pred cCcHhhCCcCccCcccCCeECCCCCEEchHHHHHHHH-----------cCCCCCCCCCCCChhhceECHHHHHHHHHHHH
Confidence 3457899999999999999999999999999999964 35789999999988876 9999999999987
Q ss_pred hccc
Q 021263 305 EYMR 308 (315)
Q Consensus 305 e~~~ 308 (315)
...+
T Consensus 94 ~~~~ 97 (100)
T 2kre_A 94 EKQN 97 (100)
T ss_dssp TTTC
T ss_pred Hhhh
Confidence 6543
No 3
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=99.58 E-value=1.6e-15 Score=113.53 Aligned_cols=69 Identities=12% Similarity=0.082 Sum_probs=61.6
Q ss_pred CccCceeccccccCCCcEEccCCCcchHHhHHHHHhhhhHhcccCCCCCCCCccccccccCCCC--cHHHHHHHHHHHHh
Q 021263 228 LEYDLTCAVCLDLVFNPYALSCGHLFCKLCACSAASVMVFEGLKSASPDSKCPICREIIHISSI--GAGWQLGCKETWQE 305 (315)
Q Consensus 228 l~~~l~C~IC~~~~~~Pv~l~CgH~FC~~Ci~~~~~~~~~~~~~~~~~~~~CP~Cr~~v~~~~~--n~~l~~lv~~~~~e 305 (315)
+.+.+.||||+++|.+||+++|||+||..||..|+. ....||.|+.++....+ |..|+++|+.|...
T Consensus 11 ~p~~~~CpI~~~~m~dPV~~~cGhtf~r~~I~~~l~-----------~~~~cP~~~~~l~~~~l~pn~~L~~~i~~~~~~ 79 (85)
T 2kr4_A 11 APDEFRDPLMDTLMTDPVRLPSGTVMDRSIILRHLL-----------NSPTDPFNRQMLTESMLEPVPELKEQIQAWMRE 79 (85)
T ss_dssp CCTTTBCTTTCSBCSSEEECTTSCEEEHHHHHHHHH-----------HCSBCTTTCCBCCGGGCEECHHHHHHHHHHHHH
T ss_pred CchheECcccCchhcCCeECCCCCEECHHHHHHHHh-----------cCCCCCCCcCCCChHhcchHHHHHHHHHHHHHH
Confidence 457899999999999999999999999999999975 24689999999988776 99999999999876
Q ss_pred cc
Q 021263 306 YM 307 (315)
Q Consensus 306 ~~ 307 (315)
..
T Consensus 80 ~~ 81 (85)
T 2kr4_A 80 KQ 81 (85)
T ss_dssp HH
T ss_pred hh
Confidence 54
No 4
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=99.58 E-value=2.9e-15 Score=113.63 Aligned_cols=73 Identities=19% Similarity=0.441 Sum_probs=61.3
Q ss_pred ccCccCceeccccccCCCcEEcc-CCCcchHHhHHHHHhhhhHhcccCCCCCCCCccccccc-cCCCC--cHHHHHHHHH
Q 021263 226 IKLEYDLTCAVCLDLVFNPYALS-CGHLFCKLCACSAASVMVFEGLKSASPDSKCPICREII-HISSI--GAGWQLGCKE 301 (315)
Q Consensus 226 ~~l~~~l~C~IC~~~~~~Pv~l~-CgH~FC~~Ci~~~~~~~~~~~~~~~~~~~~CP~Cr~~v-~~~~~--n~~l~~lv~~ 301 (315)
..+.+.+.||||++++.+|++++ |||+||..||..|+. ..+...||+||.++ ....+ |..+.++++.
T Consensus 8 ~~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~---------~~~~~~CP~Cr~~~~~~~~~~~n~~l~~~i~~ 78 (92)
T 3ztg_A 8 DPIPDELLCLICKDIMTDAVVIPCCGNSYCDECIRTALL---------ESDEHTCPTCHQNDVSPDALIANKFLRQAVNN 78 (92)
T ss_dssp CCCCTTTEETTTTEECSSCEECTTTCCEECHHHHHHHHH---------HCTTCCCTTTCCSSCCTTSCEECHHHHHHHHH
T ss_pred ccCCcCCCCCCCChhhcCceECCCCCCHHHHHHHHHHHH---------hcCCCcCcCCCCcCCCccccCcCHHHHHHHHH
Confidence 34567899999999999999999 999999999999974 12447899999997 44444 9999999999
Q ss_pred HHHhcc
Q 021263 302 TWQEYM 307 (315)
Q Consensus 302 ~~~e~~ 307 (315)
+.....
T Consensus 79 ~~~~~~ 84 (92)
T 3ztg_A 79 FKNETG 84 (92)
T ss_dssp HHHHHT
T ss_pred HHHHHh
Confidence 988654
No 5
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=99.57 E-value=5.1e-15 Score=113.78 Aligned_cols=71 Identities=11% Similarity=0.087 Sum_probs=62.9
Q ss_pred cCccCceeccccccCCCcEEccCC-CcchHHhHHHHHhhhhHhcccCCCCCCCCccccccccCCCC--cHHHHHHHHHHH
Q 021263 227 KLEYDLTCAVCLDLVFNPYALSCG-HLFCKLCACSAASVMVFEGLKSASPDSKCPICREIIHISSI--GAGWQLGCKETW 303 (315)
Q Consensus 227 ~l~~~l~C~IC~~~~~~Pv~l~Cg-H~FC~~Ci~~~~~~~~~~~~~~~~~~~~CP~Cr~~v~~~~~--n~~l~~lv~~~~ 303 (315)
.+.+.+.||||+++|.|||+++|| |+||+.||.+|+. ....||.||.++....+ |..|+++|+.|.
T Consensus 18 ~~p~~~~CpI~~~~m~dPV~~~cG~htf~r~cI~~~l~-----------~~~~cP~~~~~l~~~~L~pn~~Lk~~I~~~~ 86 (98)
T 1wgm_A 18 DACDEFLDPIMSTLMCDPVVLPSSRVTVDRSTIARHLL-----------SDQTDPFNRSPLTMDQIRPNTELKEKIQRWL 86 (98)
T ss_dssp SCCTTTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHTT-----------TSCBCTTTCSBCCTTTSEECHHHHHHHHHHH
T ss_pred cCcHhcCCcCccccccCCeECCCCCeEECHHHHHHHHH-----------hCCCCCCCCCCCChhhceEcHHHHHHHHHHH
Confidence 345789999999999999999999 9999999999975 35689999999988876 999999999998
Q ss_pred Hhccc
Q 021263 304 QEYMR 308 (315)
Q Consensus 304 ~e~~~ 308 (315)
.....
T Consensus 87 ~~~~~ 91 (98)
T 1wgm_A 87 AERKQ 91 (98)
T ss_dssp HHSTT
T ss_pred HHcch
Confidence 87653
No 6
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=99.51 E-value=7e-15 Score=117.79 Aligned_cols=69 Identities=26% Similarity=0.524 Sum_probs=59.7
Q ss_pred CccCceeccccccCCCcEEccCCCcchHHhHHHHHhhhhHhcccCCCCCCCCccccccccC-CC--CcHHHHHHHHHHHH
Q 021263 228 LEYDLTCAVCLDLVFNPYALSCGHLFCKLCACSAASVMVFEGLKSASPDSKCPICREIIHI-SS--IGAGWQLGCKETWQ 304 (315)
Q Consensus 228 l~~~l~C~IC~~~~~~Pv~l~CgH~FC~~Ci~~~~~~~~~~~~~~~~~~~~CP~Cr~~v~~-~~--~n~~l~~lv~~~~~ 304 (315)
+.+.+.||||++.+.+|++++|||+||..||..|+. .....||+||.++.. .. .|..+.++++.++.
T Consensus 49 ~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~----------~~~~~CP~Cr~~~~~~~~~~~n~~l~~~i~~~~p 118 (124)
T 3fl2_A 49 VEETFQCICCQELVFRPITTVCQHNVCKDCLDRSFR----------AQVFSCPACRYDLGRSYAMQVNQPLQTVLNQLFP 118 (124)
T ss_dssp HHHHTBCTTTSSBCSSEEECTTSCEEEHHHHHHHHH----------TTCCBCTTTCCBCCTTCCCCCCHHHHHHHHHHST
T ss_pred CccCCCCCcCChHHcCcEEeeCCCcccHHHHHHHHh----------HCcCCCCCCCccCCCCCCCCCCHHHHHHHHHHcc
Confidence 456799999999999999999999999999999975 355689999999987 33 49999999999876
Q ss_pred hc
Q 021263 305 EY 306 (315)
Q Consensus 305 e~ 306 (315)
..
T Consensus 119 ~~ 120 (124)
T 3fl2_A 119 GY 120 (124)
T ss_dssp TT
T ss_pred cc
Confidence 54
No 7
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=99.50 E-value=1.2e-14 Score=111.84 Aligned_cols=73 Identities=18% Similarity=0.364 Sum_probs=63.1
Q ss_pred ccCccCceeccccccCCCcEEc-cCCCcchHHhHHHHHhhhhHhcccCCCCCCCCccccccccCCCC--cHHHHHHHHHH
Q 021263 226 IKLEYDLTCAVCLDLVFNPYAL-SCGHLFCKLCACSAASVMVFEGLKSASPDSKCPICREIIHISSI--GAGWQLGCKET 302 (315)
Q Consensus 226 ~~l~~~l~C~IC~~~~~~Pv~l-~CgH~FC~~Ci~~~~~~~~~~~~~~~~~~~~CP~Cr~~v~~~~~--n~~l~~lv~~~ 302 (315)
..+.+.+.|+||++.+.+|+.+ +|||+||..||.+|+. ....||+||..+....+ |..+.++++.+
T Consensus 17 ~~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~-----------~~~~CP~Cr~~~~~~~l~~n~~l~~~i~~~ 85 (99)
T 2y43_A 17 KTIDDLLRCGICFEYFNIAMIIPQCSHNYCSLCIRKFLS-----------YKTQCPTCCVTVTEPDLKNNRILDELVKSL 85 (99)
T ss_dssp HHHHHHTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHT-----------TCCBCTTTCCBCCGGGCEECHHHHHHHHHH
T ss_pred HhCCCCCCcccCChhhCCcCEECCCCCHhhHHHHHHHHH-----------CCCCCCCCCCcCChhhCCcCHHHHHHHHHH
Confidence 3456789999999999999997 8999999999999964 45789999999987665 99999999999
Q ss_pred HHhcccc
Q 021263 303 WQEYMRK 309 (315)
Q Consensus 303 ~~e~~~~ 309 (315)
...+.+.
T Consensus 86 ~~~~~~~ 92 (99)
T 2y43_A 86 NFARNHL 92 (99)
T ss_dssp HHHHHTC
T ss_pred HHHHHHH
Confidence 8877653
No 8
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=99.46 E-value=2.1e-14 Score=110.76 Aligned_cols=72 Identities=14% Similarity=0.318 Sum_probs=60.2
Q ss_pred ccCccCceeccccccCCCcEE-ccCCCcchHHhHHHHHhhhhHhcccCCCCCCCCccccccccCCCC--cHHHHHHHHHH
Q 021263 226 IKLEYDLTCAVCLDLVFNPYA-LSCGHLFCKLCACSAASVMVFEGLKSASPDSKCPICREIIHISSI--GAGWQLGCKET 302 (315)
Q Consensus 226 ~~l~~~l~C~IC~~~~~~Pv~-l~CgH~FC~~Ci~~~~~~~~~~~~~~~~~~~~CP~Cr~~v~~~~~--n~~l~~lv~~~ 302 (315)
..+.+.+.|+||++.+.+|+. ++|||+||..||.+|+. .....||+||.++....+ |..+.++++.+
T Consensus 17 ~~l~~~~~C~IC~~~~~~p~~~~~CgH~FC~~Ci~~~~~----------~~~~~CP~Cr~~~~~~~l~~~~~~~~i~~~~ 86 (100)
T 3lrq_A 17 ESIAEVFRCFICMEKLRDARLCPHCSKLCCFSCIRRWLT----------EQRAQCPHCRAPLQLRELVNCRWAEEVTQQL 86 (100)
T ss_dssp HHHHHHTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHH----------HTCSBCTTTCCBCCGGGCEECTTHHHHHHHH
T ss_pred ccCCCCCCCccCCccccCccccCCCCChhhHHHHHHHHH----------HCcCCCCCCCCcCCHHHhHhhHHHHHHHHHH
Confidence 345678999999999999999 99999999999999976 123789999999988776 78888888777
Q ss_pred HHhcc
Q 021263 303 WQEYM 307 (315)
Q Consensus 303 ~~e~~ 307 (315)
...+.
T Consensus 87 ~~l~~ 91 (100)
T 3lrq_A 87 DTLQL 91 (100)
T ss_dssp HHHCC
T ss_pred HHHHH
Confidence 66543
No 9
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=99.45 E-value=3.6e-14 Score=117.47 Aligned_cols=70 Identities=27% Similarity=0.478 Sum_probs=60.3
Q ss_pred cCccCceeccccccCCCcEEccCCCcchHHhHHHHHhhhhHhcccCCCCCCCCccccccccCC-C--CcHHHHHHHHHHH
Q 021263 227 KLEYDLTCAVCLDLVFNPYALSCGHLFCKLCACSAASVMVFEGLKSASPDSKCPICREIIHIS-S--IGAGWQLGCKETW 303 (315)
Q Consensus 227 ~l~~~l~C~IC~~~~~~Pv~l~CgH~FC~~Ci~~~~~~~~~~~~~~~~~~~~CP~Cr~~v~~~-~--~n~~l~~lv~~~~ 303 (315)
.+.+.+.|+||++.+.+|++++|||+||..||..|+. .....||+||..+... . .|..+.++++.++
T Consensus 74 ~l~~~~~C~IC~~~~~~pv~~~CgH~fC~~Ci~~~~~----------~~~~~CP~Cr~~~~~~~~l~~n~~l~~lv~~~~ 143 (150)
T 1z6u_A 74 KLEQSFMCVCCQELVYQPVTTECFHNVCKDCLQRSFK----------AQVFSCPACRHDLGQNYIMIPNEILQTLLDLFF 143 (150)
T ss_dssp HHHHHTBCTTTSSBCSSEEECTTSCEEEHHHHHHHHH----------TTCCBCTTTCCBCCTTCCCCBCHHHHHHHHHHS
T ss_pred hCccCCEeecCChhhcCCEEcCCCCchhHHHHHHHHH----------hCCCcCCCCCccCCCCCCCCCCHHHHHHHHHHh
Confidence 3456799999999999999999999999999999975 2456899999999877 3 4999999999987
Q ss_pred Hhc
Q 021263 304 QEY 306 (315)
Q Consensus 304 ~e~ 306 (315)
...
T Consensus 144 p~~ 146 (150)
T 1z6u_A 144 PGY 146 (150)
T ss_dssp TTT
T ss_pred hHh
Confidence 643
No 10
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=99.45 E-value=2.4e-14 Score=116.91 Aligned_cols=63 Identities=25% Similarity=0.592 Sum_probs=51.7
Q ss_pred ccCceeccccccCCCcEEccCCCcchHHhHHHHHhhhhHhcccCCCCCCCCccccccccCCCCcHHHHHHHHHH
Q 021263 229 EYDLTCAVCLDLVFNPYALSCGHLFCKLCACSAASVMVFEGLKSASPDSKCPICREIIHISSIGAGWQLGCKET 302 (315)
Q Consensus 229 ~~~l~C~IC~~~~~~Pv~l~CgH~FC~~Ci~~~~~~~~~~~~~~~~~~~~CP~Cr~~v~~~~~n~~l~~lv~~~ 302 (315)
.+++.||||++.+.+|++++|||+||..||..|+. ....||+||.++.....|..+.+++..+
T Consensus 51 ~~~~~C~iC~~~~~~~~~~~CgH~fc~~Ci~~~~~-----------~~~~CP~Cr~~~~~~~~~~~~~~~i~~~ 113 (138)
T 4ayc_A 51 ENELQCIICSEYFIEAVTLNCAHSFCSYCINEWMK-----------RKIECPICRKDIKSKTYSLVLDNCINKM 113 (138)
T ss_dssp HHHSBCTTTCSBCSSEEEETTSCEEEHHHHHHHTT-----------TCSBCTTTCCBCCCEEECHHHHHHHHHH
T ss_pred cccCCCcccCcccCCceECCCCCCccHHHHHHHHH-----------cCCcCCCCCCcCCCCCCccchhHHHHHH
Confidence 35688999999999999999999999999999864 4578999999988765565555555444
No 11
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.44 E-value=7.8e-14 Score=106.33 Aligned_cols=74 Identities=15% Similarity=0.293 Sum_probs=60.6
Q ss_pred ccCceeccccccCCCcEEcc-CCCcchHHhHHHHHhhhhHhcccCCCCCCCCcc--cccc-ccCCCC--cHHHHHHHHHH
Q 021263 229 EYDLTCAVCLDLVFNPYALS-CGHLFCKLCACSAASVMVFEGLKSASPDSKCPI--CREI-IHISSI--GAGWQLGCKET 302 (315)
Q Consensus 229 ~~~l~C~IC~~~~~~Pv~l~-CgH~FC~~Ci~~~~~~~~~~~~~~~~~~~~CP~--Cr~~-v~~~~~--n~~l~~lv~~~ 302 (315)
.+.+.||||+++|.+||+++ |||+||..||..|+.... .......||+ |+.. +...++ |..|+++|..|
T Consensus 5 ~~~~~CPI~~~~~~dPV~~~~cGh~f~r~cI~~~l~~~~-----~~~~~~~CP~tgc~~~~l~~~~L~pn~~L~~~I~~~ 79 (94)
T 2yu4_A 5 SSGFTCPITKEEMKKPVKNKVCGHTYEEDAIVRMIESRQ-----KRKKKAYCPQIGCSHTDIRKSDLIQDEALRRAIENH 79 (94)
T ss_dssp SSCCBCTTTCSBCSSEEEESSSCCEEEHHHHHHHHHHHH-----TTTCCBCCCSTTCCCCCBCGGGEEECHHHHHHHHHH
T ss_pred CcEeECcCcCchhcCCEEcCCCCCeecHHHHHHHHHHcc-----CcCCCCCCCcCcCcccccCHhhCcCCHHHHHHHHHH
Confidence 46799999999999999996 999999999999986110 1124678999 9877 766665 99999999999
Q ss_pred HHhcc
Q 021263 303 WQEYM 307 (315)
Q Consensus 303 ~~e~~ 307 (315)
.....
T Consensus 80 ~~~~~ 84 (94)
T 2yu4_A 80 NKKRH 84 (94)
T ss_dssp HTTCC
T ss_pred HHHhc
Confidence 87654
No 12
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=99.42 E-value=1.2e-13 Score=125.05 Aligned_cols=68 Identities=10% Similarity=0.050 Sum_probs=59.6
Q ss_pred ccCceeccccccCCCcEEccCCCcchHHhHHHHHhhhhHhcccCCCCCCCCccccccccCCCC--cHHHHHHHHHHHHhc
Q 021263 229 EYDLTCAVCLDLVFNPYALSCGHLFCKLCACSAASVMVFEGLKSASPDSKCPICREIIHISSI--GAGWQLGCKETWQEY 306 (315)
Q Consensus 229 ~~~l~C~IC~~~~~~Pv~l~CgH~FC~~Ci~~~~~~~~~~~~~~~~~~~~CP~Cr~~v~~~~~--n~~l~~lv~~~~~e~ 306 (315)
.+.+.||||++++.+||+++|||+||..||.+|+. .+...||+||.++....+ |..|+++|+.|....
T Consensus 206 ~~~~~c~i~~~~~~dPv~~~~gh~f~~~~i~~~~~----------~~~~~cP~~~~~~~~~~l~~n~~l~~~i~~~~~~~ 275 (281)
T 2c2l_A 206 PDYLCGKISFELMREPCITPSGITYDRKDIEEHLQ----------RVGHFNPVTRSPLTQEQLIPNLAMKEVIDAFISEN 275 (281)
T ss_dssp CSTTBCTTTCSBCSSEEECSSCCEEETTHHHHHHH----------HTCSSCTTTCCCCCGGGCEECHHHHHHHHHHHTTC
T ss_pred CcccCCcCcCCHhcCCeECCCCCEECHHHHHHHHH----------HCCCCCcCCCCCCchhcCcccHHHHHHHHHHHHHC
Confidence 36899999999999999999999999999999975 123449999999987776 999999999998754
No 13
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=99.42 E-value=9e-15 Score=107.49 Aligned_cols=68 Identities=26% Similarity=0.672 Sum_probs=51.7
Q ss_pred ccCccCceeccccccCCCcEEccCCCcchHHhHHHHHhhhhHhcccCCCCCCCCccccccccCCCC--cHHHHH
Q 021263 226 IKLEYDLTCAVCLDLVFNPYALSCGHLFCKLCACSAASVMVFEGLKSASPDSKCPICREIIHISSI--GAGWQL 297 (315)
Q Consensus 226 ~~l~~~l~C~IC~~~~~~Pv~l~CgH~FC~~Ci~~~~~~~~~~~~~~~~~~~~CP~Cr~~v~~~~~--n~~l~~ 297 (315)
..+.+.+.|+||++.+.+|+.++|||+||..|+.+|+. ...........||+||..+....+ |..+.+
T Consensus 7 ~~~~~~~~C~IC~~~~~~p~~l~CgH~fC~~Ci~~~~~----~~~~~~~~~~~CP~Cr~~~~~~~l~~n~~l~~ 76 (79)
T 2egp_A 7 GNVQEEVTCPICLELLTEPLSLDCGHSLCRACITVSNK----EAVTSMGGKSSCPVCGISYSFEHLQANQHLAN 76 (79)
T ss_dssp CCCCCCCEETTTTEECSSCCCCSSSCCCCHHHHSCCCC----CCSSSCCCCCCCSSSCCCCCSSGGGTCSSSCC
T ss_pred hhcccCCCCcCCCcccCCeeECCCCCHHHHHHHHHHHH----hcccCCCCCCcCCCCCCcCCHhhCCcCHHHHH
Confidence 34567899999999999999999999999999988854 000011246789999999887654 655443
No 14
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=99.42 E-value=7.1e-14 Score=109.18 Aligned_cols=68 Identities=24% Similarity=0.465 Sum_probs=58.5
Q ss_pred ccCccCceeccccccCCCcEEc-cCCCcchHHhHHHHHhhhhHhcccCCCCCCCCccccccccCC----C--CcHHHHHH
Q 021263 226 IKLEYDLTCAVCLDLVFNPYAL-SCGHLFCKLCACSAASVMVFEGLKSASPDSKCPICREIIHIS----S--IGAGWQLG 298 (315)
Q Consensus 226 ~~l~~~l~C~IC~~~~~~Pv~l-~CgH~FC~~Ci~~~~~~~~~~~~~~~~~~~~CP~Cr~~v~~~----~--~n~~l~~l 298 (315)
..+.+.+.|+||++.+.+|+++ +|||+||..||..|+. ....||+||..+... . .|..+.++
T Consensus 10 ~~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~-----------~~~~CP~Cr~~~~~~~~~~~l~~n~~l~~~ 78 (108)
T 2ckl_A 10 TELNPHLMCVLCGGYFIDATTIIECLHSFCKTCIVRYLE-----------TSKYCPICDVQVHKTRPLLNIRSDKTLQDI 78 (108)
T ss_dssp HHHGGGTBCTTTSSBCSSEEEETTTCCEEEHHHHHHHHT-----------SCSBCTTTCCBSCSSCGGGGEEECHHHHHH
T ss_pred hccCCcCCCccCChHHhCcCEeCCCCChhhHHHHHHHHH-----------hCCcCcCCCccccccCcccccCcCHHHHHH
Confidence 3456789999999999999997 9999999999999965 348899999998865 2 38999999
Q ss_pred HHHHHH
Q 021263 299 CKETWQ 304 (315)
Q Consensus 299 v~~~~~ 304 (315)
++.+..
T Consensus 79 i~~~~~ 84 (108)
T 2ckl_A 79 VYKLVP 84 (108)
T ss_dssp HHHHST
T ss_pred HHHHhh
Confidence 998865
No 15
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.42 E-value=3e-14 Score=105.90 Aligned_cols=68 Identities=22% Similarity=0.578 Sum_probs=53.0
Q ss_pred cccCccCceeccccccCCCcEEccCCCcchHHhHHHHHhhhhHhcccCCCCCCCCccccccccCCCC--cHHHHH
Q 021263 225 SIKLEYDLTCAVCLDLVFNPYALSCGHLFCKLCACSAASVMVFEGLKSASPDSKCPICREIIHISSI--GAGWQL 297 (315)
Q Consensus 225 ~~~l~~~l~C~IC~~~~~~Pv~l~CgH~FC~~Ci~~~~~~~~~~~~~~~~~~~~CP~Cr~~v~~~~~--n~~l~~ 297 (315)
...+.+.+.|+||++.+.+|+.++|||+||..|+..|+... ........||.||..+....+ |..+.+
T Consensus 13 ~~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~-----~~~~~~~~CP~Cr~~~~~~~~~~n~~l~~ 82 (85)
T 2ecw_A 13 LEMIKEEVTCPICLELLKEPVSADCNHSFCRACITLNYESN-----RNTDGKGNCPVCRVPYPFGNLKPNLHVAN 82 (85)
T ss_dssp CCCCCTTTSCTTTCSCCSSCEECTTSCCBCHHHHHHHHHHS-----BCTTSCBCCTTTCCCCCTTCCEECSCCCS
T ss_pred HHhCccCCCCcCCChhhCcceeCCCCCHHHHHHHHHHHHhc-----cCCCCCCCCCCCCCcCCHHhCCcCHHHHH
Confidence 34456789999999999999999999999999999997510 012346899999999887755 655443
No 16
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=99.41 E-value=1.7e-13 Score=116.01 Aligned_cols=68 Identities=12% Similarity=0.057 Sum_probs=59.5
Q ss_pred ccCceeccccccCCCcEEccCCCcchHHhHHHHHhhhhHhcccCCCCCCCCccccccccCCCC--cHHHHHHHHHHHHhc
Q 021263 229 EYDLTCAVCLDLVFNPYALSCGHLFCKLCACSAASVMVFEGLKSASPDSKCPICREIIHISSI--GAGWQLGCKETWQEY 306 (315)
Q Consensus 229 ~~~l~C~IC~~~~~~Pv~l~CgH~FC~~Ci~~~~~~~~~~~~~~~~~~~~CP~Cr~~v~~~~~--n~~l~~lv~~~~~e~ 306 (315)
.+.+.||||+++|.+||+++|||+||..||..|+. .....||.|+.++....+ |..|++++..|....
T Consensus 104 p~~f~CPI~~elm~DPV~~~~Ghtfer~~I~~~l~----------~~~~tcP~t~~~l~~~~L~pN~~Lk~~Ie~~~~~~ 173 (179)
T 2f42_A 104 PDYLCGKISFELMREPCITPSGITYDRKDIEEHLQ----------RVGHFDPVTRSPLTQDQLIPNLAMKEVIDAFIQEN 173 (179)
T ss_dssp CGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHHH----------HTCSBCTTTCCBCCGGGCEECHHHHHHHHHHHHHC
T ss_pred cHhhcccCccccCCCCeECCCCCEECHHHHHHHHH----------hCCCCCCCCcCCCChhhCcchHHHHHHHHHHHHHC
Confidence 36899999999999999999999999999999975 122369999999988776 999999999998654
No 17
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.40 E-value=5.1e-14 Score=111.66 Aligned_cols=70 Identities=23% Similarity=0.494 Sum_probs=59.8
Q ss_pred cccCccCceeccccccCCCcEEc-cCCCcchHHhHHHHHhhhhHhcccCCCCCCCCccccccccCCCC--cHHHHHHHHH
Q 021263 225 SIKLEYDLTCAVCLDLVFNPYAL-SCGHLFCKLCACSAASVMVFEGLKSASPDSKCPICREIIHISSI--GAGWQLGCKE 301 (315)
Q Consensus 225 ~~~l~~~l~C~IC~~~~~~Pv~l-~CgH~FC~~Ci~~~~~~~~~~~~~~~~~~~~CP~Cr~~v~~~~~--n~~l~~lv~~ 301 (315)
...+.+.+.||||++.+.+|+++ +|||+||..||..|+. ..||+||.++....+ |..+.++++.
T Consensus 16 ~~~l~~~~~C~IC~~~~~~pv~~~~CgH~fC~~Ci~~~~~-------------~~CP~Cr~~~~~~~~~~n~~l~~l~~~ 82 (117)
T 1jm7_B 16 LDRLEKLLRCSRCTNILREPVCLGGCEHIFCSNCVSDCIG-------------TGCPVCYTPAWIQDLKINRQLDSMIQL 82 (117)
T ss_dssp HHHHHHTTSCSSSCSCCSSCBCCCSSSCCBCTTTGGGGTT-------------TBCSSSCCBCSCSSCCCCHHHHHHHHH
T ss_pred HHhchhCCCCCCCChHhhCccEeCCCCCHHHHHHHHHHhc-------------CCCcCCCCcCccccccccHHHHHHHHH
Confidence 34556889999999999999998 9999999999988731 689999999977655 9999999999
Q ss_pred HHHhcc
Q 021263 302 TWQEYM 307 (315)
Q Consensus 302 ~~~e~~ 307 (315)
+...+.
T Consensus 83 ~~~~~~ 88 (117)
T 1jm7_B 83 CSKLRN 88 (117)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 876654
No 18
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=99.39 E-value=7.1e-14 Score=110.39 Aligned_cols=69 Identities=20% Similarity=0.543 Sum_probs=57.1
Q ss_pred cCccCceeccccccCCCcEEccCCCcchHHhHHHHHhhhhHhcccCCCCCCCCccccccccC-------C--CCcHHHHH
Q 021263 227 KLEYDLTCAVCLDLVFNPYALSCGHLFCKLCACSAASVMVFEGLKSASPDSKCPICREIIHI-------S--SIGAGWQL 297 (315)
Q Consensus 227 ~l~~~l~C~IC~~~~~~Pv~l~CgH~FC~~Ci~~~~~~~~~~~~~~~~~~~~CP~Cr~~v~~-------~--~~n~~l~~ 297 (315)
.+.+++.|+||++.+.+|++++|||+||..||.+|+. .....||.||..+.. . .+|..+.+
T Consensus 11 ~~~~~~~C~iC~~~~~~p~~~~CgH~fC~~Ci~~~~~----------~~~~~CP~Cr~~~~~~~~~~~~~~~~~n~~l~~ 80 (115)
T 3l11_A 11 PSLSECQCGICMEILVEPVTLPCNHTLCKPCFQSTVE----------KASLCCPFCRRRVSSWTRYHTRRNSLVNVELWT 80 (115)
T ss_dssp CCHHHHBCTTTCSBCSSCEECTTSCEECHHHHCCCCC----------TTTSBCTTTCCBCHHHHHHHHHTTCCBCHHHHH
T ss_pred CCCCCCCCccCCcccCceeEcCCCCHHhHHHHHHHHh----------HCcCCCCCCCcccCccccccccccchhhHHHHH
Confidence 3456899999999999999999999999999988753 246789999999764 2 34899999
Q ss_pred HHHHHHHh
Q 021263 298 GCKETWQE 305 (315)
Q Consensus 298 lv~~~~~e 305 (315)
++..+..+
T Consensus 81 ~i~~~~p~ 88 (115)
T 3l11_A 81 IIQKHYPR 88 (115)
T ss_dssp HHHHHSHH
T ss_pred HHHHHCCH
Confidence 99888644
No 19
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.39 E-value=2.9e-13 Score=97.83 Aligned_cols=56 Identities=23% Similarity=0.610 Sum_probs=48.4
Q ss_pred cccCccCceeccccccCCCcEEc-cCCCcchHHhHHHHHhhhhHhcccCCCCCCCCccccccccCCCC
Q 021263 225 SIKLEYDLTCAVCLDLVFNPYAL-SCGHLFCKLCACSAASVMVFEGLKSASPDSKCPICREIIHISSI 291 (315)
Q Consensus 225 ~~~l~~~l~C~IC~~~~~~Pv~l-~CgH~FC~~Ci~~~~~~~~~~~~~~~~~~~~CP~Cr~~v~~~~~ 291 (315)
...+.+.+.|+||++.+.+|+++ +|||+||..||.+|+. ....||+||..+...++
T Consensus 9 ~~~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~-----------~~~~CP~Cr~~~~~~~~ 65 (72)
T 2djb_A 9 LSELTPYILCSICKGYLIDATTITECLHTFCKSCIVRHFY-----------YSNRCPKCNIVVHQTQP 65 (72)
T ss_dssp CCCCCGGGSCTTTSSCCSSCEECSSSCCEECHHHHHHHHH-----------HCSSCTTTCCCCCSSCS
T ss_pred HhhcCCCCCCCCCChHHHCcCEECCCCCHHHHHHHHHHHH-----------cCCcCCCcCcccCcccc
Confidence 34556789999999999999997 9999999999999975 35789999999887765
No 20
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=99.38 E-value=2.9e-13 Score=98.37 Aligned_cols=56 Identities=23% Similarity=0.599 Sum_probs=46.3
Q ss_pred cccCccCceeccccccCCCcEEcc-CCCcchHHhHHHHHhhhhHhcccCCCCCCCCccccccccCC
Q 021263 225 SIKLEYDLTCAVCLDLVFNPYALS-CGHLFCKLCACSAASVMVFEGLKSASPDSKCPICREIIHIS 289 (315)
Q Consensus 225 ~~~l~~~l~C~IC~~~~~~Pv~l~-CgH~FC~~Ci~~~~~~~~~~~~~~~~~~~~CP~Cr~~v~~~ 289 (315)
...+.+.+.|+||++.+.+|++++ |||+||..||.+|+.. .....||+||.++...
T Consensus 9 ~~~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~---------~~~~~CP~Cr~~~~~~ 65 (74)
T 2yur_A 9 DDPIPDELLCLICKDIMTDAVVIPCCGNSYCDECIRTALLE---------SDEHTCPTCHQNDVSP 65 (74)
T ss_dssp CCCSCGGGSCSSSCCCCTTCEECSSSCCEECTTHHHHHHHH---------SSSSCCSSSCCSSCCT
T ss_pred cccCCCCCCCcCCChHHhCCeEcCCCCCHHHHHHHHHHHHh---------cCCCcCCCCCCcCCCc
Confidence 344567899999999999999999 9999999999999751 1347899999985543
No 21
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.38 E-value=5e-14 Score=104.67 Aligned_cols=67 Identities=28% Similarity=0.725 Sum_probs=52.4
Q ss_pred ccCccCceeccccccCCCcEEccCCCcchHHhHHHHHhhhhHhcccCCCCCCCCccccccccCCCC--cHHHHH
Q 021263 226 IKLEYDLTCAVCLDLVFNPYALSCGHLFCKLCACSAASVMVFEGLKSASPDSKCPICREIIHISSI--GAGWQL 297 (315)
Q Consensus 226 ~~l~~~l~C~IC~~~~~~Pv~l~CgH~FC~~Ci~~~~~~~~~~~~~~~~~~~~CP~Cr~~v~~~~~--n~~l~~ 297 (315)
..+.+.+.|+||++.+.+|+.++|||+||..|+..|+..... ......||.||..+....+ |..+.+
T Consensus 14 ~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~-----~~~~~~CP~Cr~~~~~~~~~~n~~l~~ 82 (85)
T 2ecv_A 14 VNVKEEVTCPICLELLTQPLSLDCGHSFCQACLTANHKKSML-----DKGESSCPVCRISYQPENIRPNRHVAN 82 (85)
T ss_dssp CCCCCCCCCTTTCSCCSSCBCCSSSCCBCTTHHHHHHHHHHH-----TTSCCCCTTTCCSSCSSSCCCSCCCCC
T ss_pred HHccCCCCCCCCCcccCCceeCCCCCHHHHHHHHHHHHHhhc-----CCCCCcCCCCCCccCHHhcCccHHHHH
Confidence 345678999999999999999999999999999999752111 1246889999999887654 554443
No 22
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.38 E-value=3.4e-13 Score=95.73 Aligned_cols=54 Identities=31% Similarity=0.686 Sum_probs=46.8
Q ss_pred cCccCceeccccccCCCcEEccCCCcchHHhHHHHHhhhhHhcccCCCCCCCCccccccccCCC
Q 021263 227 KLEYDLTCAVCLDLVFNPYALSCGHLFCKLCACSAASVMVFEGLKSASPDSKCPICREIIHISS 290 (315)
Q Consensus 227 ~l~~~l~C~IC~~~~~~Pv~l~CgH~FC~~Ci~~~~~~~~~~~~~~~~~~~~CP~Cr~~v~~~~ 290 (315)
.+.+.+.|+||++.+.+|+.++|||+||..||.+|+. .....||+||.++...+
T Consensus 11 ~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~----------~~~~~CP~Cr~~~~~~~ 64 (66)
T 2ecy_A 11 TVEDKYKCEKCHLVLCSPKQTECGHRFCESCMAALLS----------SSSPKCTACQESIVKDK 64 (66)
T ss_dssp SCCCCEECTTTCCEESSCCCCSSSCCCCHHHHHHHHT----------TSSCCCTTTCCCCCTTT
T ss_pred cCCcCCCCCCCChHhcCeeECCCCCHHHHHHHHHHHH----------hCcCCCCCCCcCCChhh
Confidence 3457899999999999999999999999999999963 35678999999987654
No 23
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.37 E-value=6.4e-13 Score=98.18 Aligned_cols=49 Identities=29% Similarity=0.658 Sum_probs=44.1
Q ss_pred CccCceeccccccCCCcEEccCCCcchHHhHHHHHhhhhHhcccCCCCCCCCcccccccc
Q 021263 228 LEYDLTCAVCLDLVFNPYALSCGHLFCKLCACSAASVMVFEGLKSASPDSKCPICREIIH 287 (315)
Q Consensus 228 l~~~l~C~IC~~~~~~Pv~l~CgH~FC~~Ci~~~~~~~~~~~~~~~~~~~~CP~Cr~~v~ 287 (315)
....+.|+||++.+.+|++++|||+||..||.+|+. ....||+||.++.
T Consensus 12 ~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~-----------~~~~CP~Cr~~~~ 60 (81)
T 2csy_A 12 EEIPFRCFICRQAFQNPVVTKCRHYFCESCALEHFR-----------ATPRCYICDQPTG 60 (81)
T ss_dssp CCCCSBCSSSCSBCCSEEECTTSCEEEHHHHHHHHH-----------HCSBCSSSCCBCC
T ss_pred CCCCCCCcCCCchhcCeeEccCCCHhHHHHHHHHHH-----------CCCcCCCcCcccc
Confidence 456799999999999999999999999999999975 3568999999987
No 24
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.37 E-value=9.3e-13 Score=95.14 Aligned_cols=57 Identities=30% Similarity=0.796 Sum_probs=47.7
Q ss_pred ccCccCceeccccccCCCcEEccCCCcchHHhHHHHHhhhhHhcccCCCCCCCCccccccccCCC
Q 021263 226 IKLEYDLTCAVCLDLVFNPYALSCGHLFCKLCACSAASVMVFEGLKSASPDSKCPICREIIHISS 290 (315)
Q Consensus 226 ~~l~~~l~C~IC~~~~~~Pv~l~CgH~FC~~Ci~~~~~~~~~~~~~~~~~~~~CP~Cr~~v~~~~ 290 (315)
..+.+.+.|+||++.+.+|+.++|||+||..|+..|+. .......||+||.++...+
T Consensus 15 ~~~~~~~~C~IC~~~~~~~~~~~CgH~fC~~Ci~~~~~--------~~~~~~~CP~Cr~~~~~~~ 71 (73)
T 2ysl_A 15 NKLQEEVICPICLDILQKPVTIDCGHNFCLKCITQIGE--------TSCGFFKCPLCKTSVRKNA 71 (73)
T ss_dssp CCCCCCCBCTTTCSBCSSEEECTTCCEEEHHHHHHHCS--------SSCSCCCCSSSCCCCCCCC
T ss_pred HhCccCCEeccCCcccCCeEEcCCCChhhHHHHHHHHH--------cCCCCCCCCCCCCcCCccc
Confidence 34567899999999999999999999999999999843 1235678999999987654
No 25
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.34 E-value=2.5e-13 Score=106.49 Aligned_cols=68 Identities=28% Similarity=0.687 Sum_probs=53.5
Q ss_pred CccCceeccccccCCCcEEccCCCcchHHhHHHHHhhhhHhcccCCCCCCCCccccccccCCCC--cHHHHHHHHHHH
Q 021263 228 LEYDLTCAVCLDLVFNPYALSCGHLFCKLCACSAASVMVFEGLKSASPDSKCPICREIIHISSI--GAGWQLGCKETW 303 (315)
Q Consensus 228 l~~~l~C~IC~~~~~~Pv~l~CgH~FC~~Ci~~~~~~~~~~~~~~~~~~~~CP~Cr~~v~~~~~--n~~l~~lv~~~~ 303 (315)
+.+.+.|+||++.+.+|+.++|||+||..||..|+. ...+...||+||.++....+ |..+.++++.+.
T Consensus 18 ~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~--------~~~~~~~CP~Cr~~~~~~~~~~~~~l~~~~~~~~ 87 (112)
T 1jm7_A 18 MQKILECPICLELIKEPVSTKCDHIFCKFCMLKLLN--------QKKGPSQCPLCKNDITKRSLQESTRFSQLVEELL 87 (112)
T ss_dssp HHHHTSCSSSCCCCSSCCBCTTSCCCCSHHHHHHHH--------SSSSSCCCTTTSCCCCTTTCBCCCSSSHHHHHHH
T ss_pred ccCCCCCcccChhhcCeEECCCCCHHHHHHHHHHHH--------hCCCCCCCcCCCCcCCHhhcCccHHHHHHHHHHH
Confidence 346789999999999999999999999999999975 11234689999999887765 555555555554
No 26
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=99.33 E-value=5.2e-13 Score=112.11 Aligned_cols=69 Identities=26% Similarity=0.595 Sum_probs=57.3
Q ss_pred cCccCceeccccccCCCcEEc-cCCCcchHHhHHHHHhhhhHhcccCCCCCCCCccccccccCCC---CcHHHHHHHHHH
Q 021263 227 KLEYDLTCAVCLDLVFNPYAL-SCGHLFCKLCACSAASVMVFEGLKSASPDSKCPICREIIHISS---IGAGWQLGCKET 302 (315)
Q Consensus 227 ~l~~~l~C~IC~~~~~~Pv~l-~CgH~FC~~Ci~~~~~~~~~~~~~~~~~~~~CP~Cr~~v~~~~---~n~~l~~lv~~~ 302 (315)
.+.+.+.||||++.+.+|+.+ +|||+||..||..|+. .....||+||.++.... .|..+.+++..+
T Consensus 50 ~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~----------~~~~~CP~Cr~~~~~~~~l~~~~~l~~~i~~~ 119 (165)
T 2ckl_B 50 SLHSELMCPICLDMLKNTMTTKECLHRFCADCIITALR----------SGNKECPTCRKKLVSKRSLRPDPNFDALISKI 119 (165)
T ss_dssp CCHHHHBCTTTSSBCSSEEEETTTCCEEEHHHHHHHHH----------TTCCBCTTTCCBCCSGGGEEECHHHHHHHHHH
T ss_pred hCCCCCCCcccChHhhCcCEeCCCCChhHHHHHHHHHH----------hCcCCCCCCCCcCCCcccCCcCHHHHHHHHHH
Confidence 445789999999999999987 9999999999999975 24678999999986543 399999999988
Q ss_pred HHh
Q 021263 303 WQE 305 (315)
Q Consensus 303 ~~e 305 (315)
...
T Consensus 120 ~~~ 122 (165)
T 2ckl_B 120 YPS 122 (165)
T ss_dssp C--
T ss_pred Hcc
Confidence 654
No 27
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=99.32 E-value=8.2e-13 Score=104.80 Aligned_cols=66 Identities=26% Similarity=0.504 Sum_probs=55.5
Q ss_pred cCccCceeccccccCCCcEEccCCCcchHHhHHHHHhhhhHhcccCCCCCCCCccccccccCCCC--cHHHHHHHHHH
Q 021263 227 KLEYDLTCAVCLDLVFNPYALSCGHLFCKLCACSAASVMVFEGLKSASPDSKCPICREIIHISSI--GAGWQLGCKET 302 (315)
Q Consensus 227 ~l~~~l~C~IC~~~~~~Pv~l~CgH~FC~~Ci~~~~~~~~~~~~~~~~~~~~CP~Cr~~v~~~~~--n~~l~~lv~~~ 302 (315)
.+.+.+.|+||++.+.+|++++|||+||..||..|+. .....||+||.++....+ |..+.+++..+
T Consensus 14 ~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~----------~~~~~CP~Cr~~~~~~~~~~~~~l~~~i~~l 81 (118)
T 3hct_A 14 PLESKYECPICLMALREAVQTPCGHRFCKACIIKSIR----------DAGHKCPVDNEILLENQLFPDNFAKREILSL 81 (118)
T ss_dssp CCCGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHHH----------HHCSBCTTTCCBCCGGGCEECHHHHHHHHTS
T ss_pred CCCCCCCCCcCChhhcCeEECCcCChhhHHHHHHHHh----------hCCCCCCCCCCCcCHHhcccCHHHHHHHccc
Confidence 4567899999999999999999999999999999975 123489999999988765 77777777664
No 28
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=99.29 E-value=9e-13 Score=104.14 Aligned_cols=66 Identities=23% Similarity=0.541 Sum_probs=53.2
Q ss_pred cCccCceeccccccCCCcEEccCCCcchHHhHHHHHhhhhHhcccCCCCCCCCccccccccCCCC---cHHHHHHHHHH
Q 021263 227 KLEYDLTCAVCLDLVFNPYALSCGHLFCKLCACSAASVMVFEGLKSASPDSKCPICREIIHISSI---GAGWQLGCKET 302 (315)
Q Consensus 227 ~l~~~l~C~IC~~~~~~Pv~l~CgH~FC~~Ci~~~~~~~~~~~~~~~~~~~~CP~Cr~~v~~~~~---n~~l~~lv~~~ 302 (315)
.+.+.+.||||++.+.+|+.++|||+||..||.+|+. .....||+||.++....+ +..+.+++...
T Consensus 19 ~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~----------~~~~~CP~Cr~~~~~~~~~~~~~~l~~~i~~l 87 (116)
T 1rmd_A 19 HFVKSISCQICEHILADPVETSCKHLFCRICILRCLK----------VMGSYCPSCRYPCFPTDLESPVKSFLNILNSL 87 (116)
T ss_dssp HHHHHTBCTTTCSBCSSEEECTTSCEEEHHHHHHHHH----------HTCSBCTTTCCBCCGGGCBCCCHHHHHHHHHC
T ss_pred hccCCCCCCCCCcHhcCcEEcCCCCcccHHHHHHHHh----------HCcCcCCCCCCCCCHhhccccHHHHHHHHHHh
Confidence 3456899999999999999999999999999999975 135689999999887664 55555555443
No 29
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.28 E-value=1.7e-12 Score=93.44 Aligned_cols=50 Identities=34% Similarity=0.763 Sum_probs=43.8
Q ss_pred ccCceeccccccCCCcEEccCCCcchHHhHHHHHhhhhHhcccCCCCCCCCccccccccCC
Q 021263 229 EYDLTCAVCLDLVFNPYALSCGHLFCKLCACSAASVMVFEGLKSASPDSKCPICREIIHIS 289 (315)
Q Consensus 229 ~~~l~C~IC~~~~~~Pv~l~CgH~FC~~Ci~~~~~~~~~~~~~~~~~~~~CP~Cr~~v~~~ 289 (315)
.+.+.|+||++.+.+|+.++|||.||..||.+|+. ....||+||..+...
T Consensus 13 ~~~~~C~IC~~~~~~~~~~~CgH~fC~~Ci~~~~~-----------~~~~CP~Cr~~~~~~ 62 (71)
T 2d8t_A 13 LTVPECAICLQTCVHPVSLPCKHVFCYLCVKGASW-----------LGKRCALCRQEIPED 62 (71)
T ss_dssp SSCCBCSSSSSBCSSEEEETTTEEEEHHHHHHCTT-----------CSSBCSSSCCBCCHH
T ss_pred CCCCCCccCCcccCCCEEccCCCHHHHHHHHHHHH-----------CCCcCcCcCchhCHh
Confidence 46789999999999999999999999999998853 347899999997654
No 30
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.27 E-value=3.3e-12 Score=95.51 Aligned_cols=59 Identities=29% Similarity=0.689 Sum_probs=48.6
Q ss_pred cccCccCceeccccccCCC----cEEccCCCcchHHhHHHHHhhhhHhcccCCCCCCCCccccccccCCCC
Q 021263 225 SIKLEYDLTCAVCLDLVFN----PYALSCGHLFCKLCACSAASVMVFEGLKSASPDSKCPICREIIHISSI 291 (315)
Q Consensus 225 ~~~l~~~l~C~IC~~~~~~----Pv~l~CgH~FC~~Ci~~~~~~~~~~~~~~~~~~~~CP~Cr~~v~~~~~ 291 (315)
...+.+.+.|+||++.+.+ |+.++|||+||..|+.+|+.. ......||+||..+....+
T Consensus 9 ~~~~~~~~~C~IC~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~--------~~~~~~CP~Cr~~~~~~~i 71 (88)
T 2ct2_A 9 LDALREVLECPICMESFTEEQLRPKLLHCGHTICRQCLEKLLAS--------SINGVRCPFCSKITRITSL 71 (88)
T ss_dssp CCCCCSCCBCTTTCCBCCTTSSCEEECSSSCEEEHHHHHHHHHH--------CSSCBCCTTTCCCBCCSST
T ss_pred hhhccCCCCCccCCccccccCCCeEECCCCChhhHHHHHHHHHc--------CCCCcCCCCCCCcccchhH
Confidence 3445678999999999999 999999999999999999751 1245789999999877644
No 31
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.27 E-value=3.9e-12 Score=89.23 Aligned_cols=49 Identities=35% Similarity=0.885 Sum_probs=41.6
Q ss_pred ccCccCceeccccccCCCcEEccCCCcchHHhHHHHHhhhhHhcccCCCCCCCCccc
Q 021263 226 IKLEYDLTCAVCLDLVFNPYALSCGHLFCKLCACSAASVMVFEGLKSASPDSKCPIC 282 (315)
Q Consensus 226 ~~l~~~l~C~IC~~~~~~Pv~l~CgH~FC~~Ci~~~~~~~~~~~~~~~~~~~~CP~C 282 (315)
..+.+.+.|+||++.+.+|+.++|||+||..||.+|+.. ......||+|
T Consensus 15 ~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~--------~~~~~~CP~C 63 (63)
T 2ysj_A 15 NKLQEEVICPICLDILQKPVTIDCGHNFCLKCITQIGET--------SCGFFKCPLC 63 (63)
T ss_dssp CCCCCCCBCTTTCSBCSSCEECTTSSEECHHHHHHHHHH--------CSSCCCCSCC
T ss_pred HhCccCCCCCcCCchhCCeEEeCCCCcchHHHHHHHHHc--------CCCCCcCcCC
Confidence 345678999999999999999999999999999999750 1246789998
No 32
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=99.25 E-value=4.7e-12 Score=112.33 Aligned_cols=68 Identities=19% Similarity=0.407 Sum_probs=58.6
Q ss_pred ccCceeccccccCCCcEEc-cCCCcchHHhHHHHHhhhhHhcccCCCCCCCCcc--ccccccCCCC--cHHHHHHHHHHH
Q 021263 229 EYDLTCAVCLDLVFNPYAL-SCGHLFCKLCACSAASVMVFEGLKSASPDSKCPI--CREIIHISSI--GAGWQLGCKETW 303 (315)
Q Consensus 229 ~~~l~C~IC~~~~~~Pv~l-~CgH~FC~~Ci~~~~~~~~~~~~~~~~~~~~CP~--Cr~~v~~~~~--n~~l~~lv~~~~ 303 (315)
...+.||||+++|.+||+. .|||+||..||..||. ..+...||+ |+..+...++ |..|+++++.+.
T Consensus 179 ~~el~CPIcl~~f~DPVts~~CGHsFcR~cI~~~~~---------~~~~~~CPvtGCr~~l~~~dL~pN~~L~~lve~~k 249 (267)
T 3htk_C 179 KIELTCPITCKPYEAPLISRKCNHVFDRDGIQNYLQ---------GYTTRDCPQAACSQVVSMRDFVRDPIMELRCKIAK 249 (267)
T ss_dssp BCCSBCTTTSSBCSSEEEESSSCCEEEHHHHHHHST---------TCSCEECSGGGCSCEECGGGEEECHHHHHHHHHHH
T ss_pred ceeeECcCccCcccCCeeeCCCCCcccHHHHHHHHH---------hCCCCCCCcccccCcCchhhCCcCHHHHHHHHHHH
Confidence 4689999999999999984 9999999999999864 124578999 9999888876 999999998886
Q ss_pred Hh
Q 021263 304 QE 305 (315)
Q Consensus 304 ~e 305 (315)
.-
T Consensus 250 ~r 251 (267)
T 3htk_C 250 MK 251 (267)
T ss_dssp HH
T ss_pred HH
Confidence 53
No 33
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.24 E-value=3.8e-12 Score=89.94 Aligned_cols=52 Identities=27% Similarity=0.547 Sum_probs=44.2
Q ss_pred cCceeccccc-cCCCc----EEccCCCcchHHhHHHHHhhhhHhcccCCCCCCCCccccccccCCCC
Q 021263 230 YDLTCAVCLD-LVFNP----YALSCGHLFCKLCACSAASVMVFEGLKSASPDSKCPICREIIHISSI 291 (315)
Q Consensus 230 ~~l~C~IC~~-~~~~P----v~l~CgH~FC~~Ci~~~~~~~~~~~~~~~~~~~~CP~Cr~~v~~~~~ 291 (315)
+++.||||++ .+.+| +.++|||+||..||.+|+. .....||+||.++...++
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~----------~~~~~CP~Cr~~~~~~~~ 58 (65)
T 1g25_A 2 DDQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFV----------RGAGNCPECGTPLRKSNF 58 (65)
T ss_dssp CTTCCSTTTTHHHHCSSCCEEECTTCCCEEHHHHHHHHH----------TTSSSCTTTCCCCSSCCC
T ss_pred CCCcCCcCCCCccCCCccCeecCCCCCHhHHHHHHHHHH----------cCCCcCCCCCCccccccc
Confidence 4688999999 89999 5689999999999999864 245789999999887655
No 34
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.23 E-value=3e-12 Score=91.23 Aligned_cols=51 Identities=27% Similarity=0.724 Sum_probs=43.8
Q ss_pred cCccCceeccccccCCCc-------EEccCCCcchHHhHHHHHhhhhHhcccCCCCCCCCccccccccC
Q 021263 227 KLEYDLTCAVCLDLVFNP-------YALSCGHLFCKLCACSAASVMVFEGLKSASPDSKCPICREIIHI 288 (315)
Q Consensus 227 ~l~~~l~C~IC~~~~~~P-------v~l~CgH~FC~~Ci~~~~~~~~~~~~~~~~~~~~CP~Cr~~v~~ 288 (315)
.+.+...|+||++.+.+| +.++|||.||..||.+|+. ....||+||..+..
T Consensus 11 ~~~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~-----------~~~~CP~Cr~~~~~ 68 (69)
T 2ea6_A 11 RPSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLK-----------NANTCPTCRKKINH 68 (69)
T ss_dssp CTTCCCCCTTTCCCHHHHTTTTCCEEECSSSCEEEHHHHHHHHH-----------HCSSCTTTCCCCCC
T ss_pred CCCCCCCCcccCccccccccccCCeEeCCCCChhcHHHHHHHHH-----------cCCCCCCCCCccCc
Confidence 345789999999999888 8899999999999999975 35689999998764
No 35
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=99.22 E-value=2.9e-12 Score=91.92 Aligned_cols=52 Identities=27% Similarity=0.703 Sum_probs=45.2
Q ss_pred ccCceeccccccCCCc-------EEccCCCcchHHhHHHHHhhhhHhcccCCCCCCCCccccccccCCCC
Q 021263 229 EYDLTCAVCLDLVFNP-------YALSCGHLFCKLCACSAASVMVFEGLKSASPDSKCPICREIIHISSI 291 (315)
Q Consensus 229 ~~~l~C~IC~~~~~~P-------v~l~CgH~FC~~Ci~~~~~~~~~~~~~~~~~~~~CP~Cr~~v~~~~~ 291 (315)
.+.+.|+||++.+.+| +.++|||+||..||.+|+. ....||+||..+...++
T Consensus 8 ~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~-----------~~~~CP~Cr~~~~~~~~ 66 (71)
T 3ng2_A 8 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLK-----------NANTCPTCRKKINHKRY 66 (71)
T ss_dssp TTCCBCTTTCCBHHHHHTTTCCEEECTTSCEEEHHHHHHHHH-----------HCSBCTTTCCBCCCCSC
T ss_pred CCCCCCcccChhhhccccccCCeEeCCCCChHhHHHHHHHHH-----------cCCCCCCCCCccChhhe
Confidence 4678999999999988 8899999999999999975 34689999999887654
No 36
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=99.22 E-value=3.6e-12 Score=104.29 Aligned_cols=51 Identities=31% Similarity=0.722 Sum_probs=44.5
Q ss_pred cCccCceeccccccCCCcEEccCCCcchHHhHHHHHhhhhHhcccCCCCCCCCcccccccc
Q 021263 227 KLEYDLTCAVCLDLVFNPYALSCGHLFCKLCACSAASVMVFEGLKSASPDSKCPICREIIH 287 (315)
Q Consensus 227 ~l~~~l~C~IC~~~~~~Pv~l~CgH~FC~~Ci~~~~~~~~~~~~~~~~~~~~CP~Cr~~v~ 287 (315)
.+.+.+.|+||++++.+|++++|||+||..||.+|+. .....||+||.++.
T Consensus 27 ~l~~~~~C~IC~~~~~~pv~~~CgH~FC~~Ci~~~~~----------~~~~~CP~Cr~~~~ 77 (141)
T 3knv_A 27 KLEAKYLCSACRNVLRRPFQAQCGHRYCSFCLASILS----------SGPQNCAACVHEGI 77 (141)
T ss_dssp GCCGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHGG----------GSCEECHHHHHTTC
T ss_pred cCCcCcCCCCCChhhcCcEECCCCCccCHHHHHHHHh----------cCCCCCCCCCCccc
Confidence 4568899999999999999999999999999999964 24468999999754
No 37
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.21 E-value=8.7e-12 Score=85.75 Aligned_cols=49 Identities=35% Similarity=0.858 Sum_probs=41.0
Q ss_pred ccCccCceeccccccCCCcEEccCCCcchHHhHHHHHhhhhHhcccCCCCCCCCccc
Q 021263 226 IKLEYDLTCAVCLDLVFNPYALSCGHLFCKLCACSAASVMVFEGLKSASPDSKCPIC 282 (315)
Q Consensus 226 ~~l~~~l~C~IC~~~~~~Pv~l~CgH~FC~~Ci~~~~~~~~~~~~~~~~~~~~CP~C 282 (315)
..+.+.+.|+||++.+.+|+.++|||+||..||.+|+. .......||+|
T Consensus 10 ~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~--------~~~~~~~CP~C 58 (58)
T 2ecj_A 10 ENLQVEASCSVCLEYLKEPVIIECGHNFCKACITRWWE--------DLERDFPCPVC 58 (58)
T ss_dssp SCSCCCCBCSSSCCBCSSCCCCSSCCCCCHHHHHHHTT--------SSCCSCCCSCC
T ss_pred hccccCCCCccCCcccCccEeCCCCCccCHHHHHHHHH--------hcCCCCCCCCC
Confidence 34567899999999999999999999999999999853 11356789998
No 38
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=99.20 E-value=1.1e-11 Score=90.98 Aligned_cols=55 Identities=20% Similarity=0.552 Sum_probs=43.8
Q ss_pred cCccCceeccccccCC--CcEEcc--CCCcchHHhHHHHHhhhhHhcccCCCCCCCCccccccccCCCC
Q 021263 227 KLEYDLTCAVCLDLVF--NPYALS--CGHLFCKLCACSAASVMVFEGLKSASPDSKCPICREIIHISSI 291 (315)
Q Consensus 227 ~l~~~l~C~IC~~~~~--~Pv~l~--CgH~FC~~Ci~~~~~~~~~~~~~~~~~~~~CP~Cr~~v~~~~~ 291 (315)
.+++++.||||++.+. +++.++ |||+||..|+.+++. .....||.||.++....+
T Consensus 7 ~~~~~~~CpICle~~~~~d~~~~p~~CGH~fC~~Cl~~~~~----------~~~~~CP~CR~~~~~~~~ 65 (78)
T 1e4u_A 7 AKEDPVECPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRT----------DENGLCPACRKPYPEDPA 65 (78)
T ss_dssp CCCCCCBCTTTCCBCCTTTTTCCSSTTSCCCCHHHHHHHTT----------SSCSBCTTTCCBCSSCSS
T ss_pred ccccCCcCCccCccCccccccccccCCCCCcCHHHHHHHHh----------cCCCCCCCCCCccCCCch
Confidence 3567899999999774 455555 999999999988753 256889999999887654
No 39
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=99.17 E-value=1.5e-11 Score=103.56 Aligned_cols=66 Identities=26% Similarity=0.504 Sum_probs=54.8
Q ss_pred cCccCceeccccccCCCcEEccCCCcchHHhHHHHHhhhhHhcccCCCCCCCCccccccccCCCC--cHHHHHHHHHH
Q 021263 227 KLEYDLTCAVCLDLVFNPYALSCGHLFCKLCACSAASVMVFEGLKSASPDSKCPICREIIHISSI--GAGWQLGCKET 302 (315)
Q Consensus 227 ~l~~~l~C~IC~~~~~~Pv~l~CgH~FC~~Ci~~~~~~~~~~~~~~~~~~~~CP~Cr~~v~~~~~--n~~l~~lv~~~ 302 (315)
.+.+.+.||||++++.+|++++|||+||..||.+|+. .....||+||.++....+ |..+.+.+..+
T Consensus 14 ~~~~~~~C~IC~~~~~~pv~~~CgH~fC~~Ci~~~~~----------~~~~~CP~Cr~~~~~~~~~~~~~~~~~i~~l 81 (170)
T 3hcs_A 14 PLESKYECPICLMALREAVQTPCGHRFCKACIIKSIR----------DAGHKCPVDNEILLENQLFPDNFAKREILSL 81 (170)
T ss_dssp CCCGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHHH----------HHCSBCTTTCCBCCGGGCEECHHHHHHHHTS
T ss_pred CCCCCCCCCCCChhhcCcEECCCCCHHHHHHHHHHHH----------hCCCCCCCCccCcchhhhhhhHHHHHHHhhc
Confidence 4567899999999999999999999999999999975 123489999999988765 77777776654
No 40
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.16 E-value=2.1e-11 Score=89.14 Aligned_cols=54 Identities=26% Similarity=0.562 Sum_probs=44.4
Q ss_pred cCccCceeccccccCCCc---EEccCCCcchHHhHHHHHhhhhHhcccCCCCCCCCccccccccCCCC
Q 021263 227 KLEYDLTCAVCLDLVFNP---YALSCGHLFCKLCACSAASVMVFEGLKSASPDSKCPICREIIHISSI 291 (315)
Q Consensus 227 ~l~~~l~C~IC~~~~~~P---v~l~CgH~FC~~Ci~~~~~~~~~~~~~~~~~~~~CP~Cr~~v~~~~~ 291 (315)
.......|+||++.+.++ +.++|||.||..||.+|+. ....||+||..+....+
T Consensus 11 ~~~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~-----------~~~~CP~Cr~~~~~~~~ 67 (78)
T 2ect_A 11 HVGSGLECPVCKEDYALGESVRQLPCNHLFHDSCIVPWLE-----------QHDSCPVCRKSLTGQNT 67 (78)
T ss_dssp TSSSSCCCTTTTSCCCTTSCEEECTTSCEEETTTTHHHHT-----------TTCSCTTTCCCCCCSCS
T ss_pred cCCCCCCCeeCCccccCCCCEEEeCCCCeecHHHHHHHHH-----------cCCcCcCcCCccCCccc
Confidence 345679999999998866 4579999999999999964 34689999999887654
No 41
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=99.15 E-value=8.3e-12 Score=87.53 Aligned_cols=51 Identities=27% Similarity=0.707 Sum_probs=43.9
Q ss_pred cCceeccccccCCCc-------EEccCCCcchHHhHHHHHhhhhHhcccCCCCCCCCccccccccCCCC
Q 021263 230 YDLTCAVCLDLVFNP-------YALSCGHLFCKLCACSAASVMVFEGLKSASPDSKCPICREIIHISSI 291 (315)
Q Consensus 230 ~~l~C~IC~~~~~~P-------v~l~CgH~FC~~Ci~~~~~~~~~~~~~~~~~~~~CP~Cr~~v~~~~~ 291 (315)
+.+.|+||++.+.+| +.++|||.||..|+.+|+. ....||+||.++...++
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~-----------~~~~CP~Cr~~~~~~~~ 59 (64)
T 2xeu_A 2 AMVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLK-----------NANTCPTCRKKINHKRY 59 (64)
T ss_dssp CCCBCTTTCCBHHHHHHTTCCEEEETTSCEEEHHHHHHHHH-----------HCSBCTTTCCBCTTTCE
T ss_pred CCCCCCccChhhhCccccCCCEEeCCCCCchhHHHHHHHHH-----------cCCCCCCCCccCCccce
Confidence 468899999999887 7889999999999999975 35689999999887654
No 42
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.13 E-value=1.5e-11 Score=88.04 Aligned_cols=52 Identities=29% Similarity=0.689 Sum_probs=44.4
Q ss_pred cCccCceeccccccCCCcEEccCCCcchHHhHHHHHhhhhHhcccCCCCCCCCccccccccCCC
Q 021263 227 KLEYDLTCAVCLDLVFNPYALSCGHLFCKLCACSAASVMVFEGLKSASPDSKCPICREIIHISS 290 (315)
Q Consensus 227 ~l~~~l~C~IC~~~~~~Pv~l~CgH~FC~~Ci~~~~~~~~~~~~~~~~~~~~CP~Cr~~v~~~~ 290 (315)
.+.+...|+||++.+.+ +.++|||.||..|+.+|+. ....||+||.++....
T Consensus 11 ~~~~~~~C~IC~~~~~~-~~~~CgH~fc~~Ci~~~~~-----------~~~~CP~Cr~~~~~~~ 62 (70)
T 2ecn_A 11 QLTDEEECCICMDGRAD-LILPCAHSFCQKCIDKWSD-----------RHRNCPICRLQMTGAN 62 (70)
T ss_dssp CCCCCCCCSSSCCSCCS-EEETTTEEECHHHHHHSSC-----------CCSSCHHHHHCTTCCC
T ss_pred cCCCCCCCeeCCcCccC-cccCCCCcccHHHHHHHHH-----------CcCcCCCcCCcccCCC
Confidence 34578999999999999 8899999999999998843 5788999999987654
No 43
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.12 E-value=2e-11 Score=83.75 Aligned_cols=48 Identities=27% Similarity=0.549 Sum_probs=41.2
Q ss_pred ccCceeccccccCCCcEEccCCCcchHHhHHHHHhhhhHhcccCCCCCCCCccccccccCCC
Q 021263 229 EYDLTCAVCLDLVFNPYALSCGHLFCKLCACSAASVMVFEGLKSASPDSKCPICREIIHISS 290 (315)
Q Consensus 229 ~~~l~C~IC~~~~~~Pv~l~CgH~FC~~Ci~~~~~~~~~~~~~~~~~~~~CP~Cr~~v~~~~ 290 (315)
.+.+.|+||++.+.+|+.++|||+||..|+.. ....||+||..+....
T Consensus 4 ~~~~~C~IC~~~~~~p~~l~CgH~fC~~Ci~~--------------~~~~CP~Cr~~~~~~~ 51 (56)
T 1bor_A 4 FQFLRCQQCQAEAKCPKLLPCLHTLCSGCLEA--------------SGMQCPICQAPWPLGA 51 (56)
T ss_dssp CCCSSCSSSCSSCBCCSCSTTSCCSBTTTCSS--------------SSSSCSSCCSSSSCCS
T ss_pred ccCCCceEeCCccCCeEEcCCCCcccHHHHcc--------------CCCCCCcCCcEeecCC
Confidence 36789999999999999999999999999843 3568999999987653
No 44
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=99.12 E-value=4.8e-11 Score=85.12 Aligned_cols=50 Identities=32% Similarity=0.714 Sum_probs=41.0
Q ss_pred ccCceeccccccCC---CcEEccCCCcchHHhHHHHHhhhhHhcccCCCCCCCCccccccccCC
Q 021263 229 EYDLTCAVCLDLVF---NPYALSCGHLFCKLCACSAASVMVFEGLKSASPDSKCPICREIIHIS 289 (315)
Q Consensus 229 ~~~l~C~IC~~~~~---~Pv~l~CgH~FC~~Ci~~~~~~~~~~~~~~~~~~~~CP~Cr~~v~~~ 289 (315)
.....|+||++.+. .++.++|||.||..||.+|+. ....||+||..+...
T Consensus 12 ~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~-----------~~~~CP~Cr~~~~~~ 64 (69)
T 2kiz_A 12 DTEEKCTICLSILEEGEDVRRLPCMHLFHQVCVDQWLI-----------TNKKCPICRVDIEAQ 64 (69)
T ss_dssp TCCCSBTTTTBCCCSSSCEEECTTSCEEEHHHHHHHHH-----------HCSBCTTTCSBSCSC
T ss_pred CCCCCCeeCCccccCCCcEEEeCCCCHHHHHHHHHHHH-----------cCCCCcCcCccccCc
Confidence 46789999999875 456789999999999999975 235699999987654
No 45
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=99.11 E-value=3.8e-11 Score=81.67 Aligned_cols=48 Identities=33% Similarity=0.665 Sum_probs=40.9
Q ss_pred ccCceeccccccCCC---cEEcc-CCCcchHHhHHHHHhhhhHhcccCCCCCCCCcccccccc
Q 021263 229 EYDLTCAVCLDLVFN---PYALS-CGHLFCKLCACSAASVMVFEGLKSASPDSKCPICREIIH 287 (315)
Q Consensus 229 ~~~l~C~IC~~~~~~---Pv~l~-CgH~FC~~Ci~~~~~~~~~~~~~~~~~~~~CP~Cr~~v~ 287 (315)
++...|+||++.+.+ ++.++ |||.||..|+.+|+. ....||+||.++.
T Consensus 3 ~~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~-----------~~~~CP~Cr~~~~ 54 (55)
T 1iym_A 3 DDGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLG-----------SHSTCPLCRLTVV 54 (55)
T ss_dssp CCSCCCTTTCCCCCTTSCCEECSSSCCEECTTHHHHTTT-----------TCCSCSSSCCCSC
T ss_pred CCCCcCccCCccccCCCceEECCCCCCcccHHHHHHHHH-----------cCCcCcCCCCEeE
Confidence 467899999999887 77787 999999999999854 4568999998864
No 46
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=99.09 E-value=3.7e-11 Score=85.42 Aligned_cols=48 Identities=29% Similarity=0.686 Sum_probs=41.3
Q ss_pred cCceeccccccCCCc-EEccCCCcchHHhHHHHHhhhhHhcccCCCCCCCCccccccccC
Q 021263 230 YDLTCAVCLDLVFNP-YALSCGHLFCKLCACSAASVMVFEGLKSASPDSKCPICREIIHI 288 (315)
Q Consensus 230 ~~l~C~IC~~~~~~P-v~l~CgH~FC~~Ci~~~~~~~~~~~~~~~~~~~~CP~Cr~~v~~ 288 (315)
....|+||++.+.+| +.++|||.||..|+.+|+. ....||+||..+..
T Consensus 4 ~~~~C~IC~~~~~~~~~~~~C~H~fc~~Ci~~~~~-----------~~~~CP~Cr~~~~~ 52 (68)
T 1chc_A 4 VAERCPICLEDPSNYSMALPCLHAFCYVCITRWIR-----------QNPTCPLCKVPVES 52 (68)
T ss_dssp CCCCCSSCCSCCCSCEEETTTTEEESTTHHHHHHH-----------HSCSTTTTCCCCCC
T ss_pred CCCCCeeCCccccCCcEecCCCCeeHHHHHHHHHh-----------CcCcCcCCChhhHh
Confidence 567899999999997 6689999999999999965 34689999998764
No 47
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=99.09 E-value=8.6e-11 Score=88.72 Aligned_cols=50 Identities=24% Similarity=0.621 Sum_probs=42.4
Q ss_pred CccCceeccccccCCC---cEEccCCCcchHHhHHHHHhhhhHhcccCCCCCCCCccccccccC
Q 021263 228 LEYDLTCAVCLDLVFN---PYALSCGHLFCKLCACSAASVMVFEGLKSASPDSKCPICREIIHI 288 (315)
Q Consensus 228 l~~~l~C~IC~~~~~~---Pv~l~CgH~FC~~Ci~~~~~~~~~~~~~~~~~~~~CP~Cr~~v~~ 288 (315)
..+...|+||++.+.+ ++.++|||.||..||..|+. ....||+||..+..
T Consensus 37 ~~~~~~C~IC~~~~~~~~~~~~l~C~H~Fh~~Ci~~wl~-----------~~~~CP~Cr~~~~~ 89 (91)
T 2l0b_A 37 VGQEMCCPICCSEYVKGDVATELPCHHYFHKPCVSIWLQ-----------KSGTCPVCRCMFPP 89 (91)
T ss_dssp SSSCSEETTTTEECCTTCEEEEETTTEEEEHHHHHHHHT-----------TTCBCTTTCCBSSC
T ss_pred cCCCCCCcccChhhcCCCcEEecCCCChHHHHHHHHHHH-----------cCCcCcCcCccCCC
Confidence 3467899999998887 67789999999999999964 45689999998764
No 48
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.08 E-value=6.6e-11 Score=85.93 Aligned_cols=50 Identities=28% Similarity=0.489 Sum_probs=42.3
Q ss_pred ccCceeccccccCCCc---EEccCCCcchHHhHHHHHhhhhHhcccCCCCCCCCccccccccCC
Q 021263 229 EYDLTCAVCLDLVFNP---YALSCGHLFCKLCACSAASVMVFEGLKSASPDSKCPICREIIHIS 289 (315)
Q Consensus 229 ~~~l~C~IC~~~~~~P---v~l~CgH~FC~~Ci~~~~~~~~~~~~~~~~~~~~CP~Cr~~v~~~ 289 (315)
.+...|+||++.+.++ +.++|||.||..||.+|+. ....||+||+.+...
T Consensus 21 ~~~~~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~w~~-----------~~~~CP~Cr~~~~~~ 73 (75)
T 1x4j_A 21 SEQTLCVVCMCDFESRQLLRVLPCNHEFHAKCVDKWLK-----------ANRTCPICRADSGPS 73 (75)
T ss_dssp SSCCEETTTTEECCBTCEEEEETTTEEEETTHHHHHHH-----------HCSSCTTTCCCCCCC
T ss_pred CCCCCCeECCcccCCCCeEEEECCCCHhHHHHHHHHHH-----------cCCcCcCcCCcCCCC
Confidence 4678999999999887 6689999999999999975 345899999987653
No 49
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=99.08 E-value=4.9e-11 Score=81.07 Aligned_cols=47 Identities=26% Similarity=0.650 Sum_probs=40.0
Q ss_pred cCceeccccccCCC----cEEccCCCcchHHhHHHHHhhhhHhcccCCCCCCCCcccccccc
Q 021263 230 YDLTCAVCLDLVFN----PYALSCGHLFCKLCACSAASVMVFEGLKSASPDSKCPICREIIH 287 (315)
Q Consensus 230 ~~l~C~IC~~~~~~----Pv~l~CgH~FC~~Ci~~~~~~~~~~~~~~~~~~~~CP~Cr~~v~ 287 (315)
+...|+||++.+.+ ++.++|||.||..|+.+|+. ....||+||.++.
T Consensus 4 ~~~~C~IC~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~-----------~~~~CP~Cr~~~~ 54 (55)
T 2ecm_A 4 GSSGCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLK-----------EGYRCPLCSGPSS 54 (55)
T ss_dssp CCCSCTTTCCCCCTTTSCEEECTTSCEEETTHHHHHHH-----------HTCCCTTSCCSSC
T ss_pred CCCcCcccChhhcCCCcCeEecCCCCcccHHHHHHHHH-----------cCCcCCCCCCcCC
Confidence 46789999999866 67789999999999999975 2378999998864
No 50
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.07 E-value=5.6e-11 Score=85.99 Aligned_cols=53 Identities=25% Similarity=0.452 Sum_probs=42.8
Q ss_pred ccCccCceeccccccCCCcEE---ccCCCcchHHhHHHHHhhhhHhcccCCCCCCCCccccccccCC
Q 021263 226 IKLEYDLTCAVCLDLVFNPYA---LSCGHLFCKLCACSAASVMVFEGLKSASPDSKCPICREIIHIS 289 (315)
Q Consensus 226 ~~l~~~l~C~IC~~~~~~Pv~---l~CgH~FC~~Ci~~~~~~~~~~~~~~~~~~~~CP~Cr~~v~~~ 289 (315)
..+.....|+||++.+.++.. ++|||.||..||.+|+. ....||+||.++...
T Consensus 10 ~~~~~~~~C~IC~~~~~~~~~~~~~~C~H~f~~~Ci~~~~~-----------~~~~CP~Cr~~~~~~ 65 (74)
T 2ep4_A 10 KELNLHELCAVCLEDFKPRDELGICPCKHAFHRKCLIKWLE-----------VRKVCPLCNMPVLQL 65 (74)
T ss_dssp CCCCCSCBCSSSCCBCCSSSCEEEETTTEEEEHHHHHHHHH-----------HCSBCTTTCCBCSSC
T ss_pred ccCCCCCCCcCCCcccCCCCcEEEcCCCCEecHHHHHHHHH-----------cCCcCCCcCcccccc
Confidence 344578899999999987744 49999999999999975 234899999997653
No 51
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=98.98 E-value=1.3e-10 Score=93.28 Aligned_cols=51 Identities=27% Similarity=0.715 Sum_probs=44.8
Q ss_pred cCceeccccccCCCc-------EEccCCCcchHHhHHHHHhhhhHhcccCCCCCCCCccccccccCCCC
Q 021263 230 YDLTCAVCLDLVFNP-------YALSCGHLFCKLCACSAASVMVFEGLKSASPDSKCPICREIIHISSI 291 (315)
Q Consensus 230 ~~l~C~IC~~~~~~P-------v~l~CgH~FC~~Ci~~~~~~~~~~~~~~~~~~~~CP~Cr~~v~~~~~ 291 (315)
+.+.|+||++.+.+| +.++|||+||..||.+|+. ....||+||..+....+
T Consensus 6 ~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~-----------~~~~CP~Cr~~~~~~~l 63 (133)
T 4ap4_A 6 GTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLK-----------NANTCPTCRKKINHKRY 63 (133)
T ss_dssp CSCBCTTTCCBHHHHHHTTCCEEEETTCCEEEHHHHHHHHT-----------TCSBCTTTCCBCTTTCE
T ss_pred CCCCCcccChhhhCccccccCeEecCCCChhhHHHHHHHHH-----------hCCCCCCCCCcCccccc
Confidence 578999999999999 8899999999999999975 44699999999877654
No 52
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=98.96 E-value=3.8e-10 Score=88.54 Aligned_cols=54 Identities=20% Similarity=0.475 Sum_probs=42.0
Q ss_pred cCceeccccccCCCcE------------------EccCCCcchHHhHHHHHhhhhHhcccCCCCCCCCccccccccCC
Q 021263 230 YDLTCAVCLDLVFNPY------------------ALSCGHLFCKLCACSAASVMVFEGLKSASPDSKCPICREIIHIS 289 (315)
Q Consensus 230 ~~l~C~IC~~~~~~Pv------------------~l~CgH~FC~~Ci~~~~~~~~~~~~~~~~~~~~CP~Cr~~v~~~ 289 (315)
.+..|+||++.|.+|. .++|||.||..||..|+.. ........||+||..+...
T Consensus 24 ~~~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~Fh~~Ci~~wl~~------~~~~~~~~CP~CR~~~~~~ 95 (114)
T 1v87_A 24 PEEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCN------GNKDGSLQCPSCKTIYGEK 95 (114)
T ss_dssp CSCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCEECHHHHHHHHHH------TCCSSCCBCTTTCCBSSSC
T ss_pred CCCcCccCChhhcCcccccccccccccCcccceecCCCCCcccHHHHHHHHHc------ccCCCCCcCCCCCCccCCC
Confidence 3568999999997764 6799999999999999741 0112467899999997755
No 53
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.94 E-value=8.1e-11 Score=85.58 Aligned_cols=48 Identities=35% Similarity=0.844 Sum_probs=41.1
Q ss_pred cCccCceeccccccCCCcEEccCCCc-chHHhHHHHHhhhhHhcccCCCCCCCCccccccccCC
Q 021263 227 KLEYDLTCAVCLDLVFNPYALSCGHL-FCKLCACSAASVMVFEGLKSASPDSKCPICREIIHIS 289 (315)
Q Consensus 227 ~l~~~l~C~IC~~~~~~Pv~l~CgH~-FC~~Ci~~~~~~~~~~~~~~~~~~~~CP~Cr~~v~~~ 289 (315)
.+.+...|+||++.+.+|+.++|||. ||..|+.+ ...||+||.++...
T Consensus 21 ~~~~~~~C~IC~~~~~~~~~~pCgH~~~C~~C~~~---------------~~~CP~Cr~~i~~~ 69 (75)
T 2ecg_A 21 RLQEEKLCKICMDRNIAIVFVPCGHLVTCKQCAEA---------------VDKCPMCYTVITFK 69 (75)
T ss_dssp HHHHHHSCSSSCSSCCCBCCSSSCCCCBCHHHHHH---------------CSBCTTTCCBCCCC
T ss_pred cCCCCCCCCcCCCCCCCEEEecCCCHHHHHHHhhC---------------CCCCccCCceecCc
Confidence 34567899999999999999999999 99999943 36899999997654
No 54
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=98.93 E-value=3e-10 Score=82.39 Aligned_cols=47 Identities=36% Similarity=0.882 Sum_probs=40.7
Q ss_pred cCccCceeccccccCCCcEEccCCCc-chHHhHHHHHhhhhHhcccCCCCCCCCccccccccC
Q 021263 227 KLEYDLTCAVCLDLVFNPYALSCGHL-FCKLCACSAASVMVFEGLKSASPDSKCPICREIIHI 288 (315)
Q Consensus 227 ~l~~~l~C~IC~~~~~~Pv~l~CgH~-FC~~Ci~~~~~~~~~~~~~~~~~~~~CP~Cr~~v~~ 288 (315)
.+.+.+.|+||++.+.+|+.++|||. ||..|+..| ..||+||.++..
T Consensus 20 ~~~~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~---------------~~CP~Cr~~i~~ 67 (74)
T 4ic3_A 20 RLQEEKLCKICMDRNIAIVFVPCGHLVTCKQCAEAV---------------DKCPMCYTVITF 67 (74)
T ss_dssp HHHHHTBCTTTSSSBCCEEEETTCCBCCCHHHHTTC---------------SBCTTTCCBCSE
T ss_pred cCccCCCCCCCCCCCCCEEEcCCCChhHHHHhhhcC---------------ccCCCcCcCccC
Confidence 34567899999999999999999999 999998432 689999998764
No 55
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.89 E-value=3.6e-10 Score=85.77 Aligned_cols=76 Identities=18% Similarity=0.305 Sum_probs=54.3
Q ss_pred cCceeccccccCCCcEEc---cCCCcchHHhHHHHHhhhhHhcccCCCCCCCCcc--cccc--ccCCCC-cHHHHHHHHH
Q 021263 230 YDLTCAVCLDLVFNPYAL---SCGHLFCKLCACSAASVMVFEGLKSASPDSKCPI--CREI--IHISSI-GAGWQLGCKE 301 (315)
Q Consensus 230 ~~l~C~IC~~~~~~Pv~l---~CgH~FC~~Ci~~~~~~~~~~~~~~~~~~~~CP~--Cr~~--v~~~~~-n~~l~~lv~~ 301 (315)
+.++|+||++.+..|..+ +|||.||..|+..++......+ ......||. |+.. +....+ +....+++++
T Consensus 4 ~~~~C~IC~~~~~~~~~~~l~~CgH~FC~~Cl~~~~~~~i~~g---~~~~i~CP~~~C~~~~~~~~~~i~~ll~~~~~~k 80 (94)
T 1wim_A 4 GSSGCKLCLGEYPVEQMTTIAQCQCIFCTLCLKQYVELLIKEG---LETAISCPDAACPKQGHLQENEIECMVAAEIMQR 80 (94)
T ss_dssp SBCCCSSSCCCCBGGGEEEETTTTEEEEHHHHHHHHHHHHHHC---SCCCEECSCTTCSSCCEECHHHHHHHSCHHHHHH
T ss_pred CCcCCcccCcccccccceEcCCCCCcccHHHHHHHHHHHhhcC---CcccccCccccCCCCCccCHHHHHHHCCHHHHHH
Confidence 468899999999888653 6999999999999986322222 124578999 9999 776655 4444567777
Q ss_pred HHHhccc
Q 021263 302 TWQEYMR 308 (315)
Q Consensus 302 ~~~e~~~ 308 (315)
|.....+
T Consensus 81 y~~~~~~ 87 (94)
T 1wim_A 81 YKKLQFE 87 (94)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 7654433
No 56
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A
Probab=98.88 E-value=9.2e-10 Score=77.49 Aligned_cols=49 Identities=29% Similarity=0.605 Sum_probs=41.9
Q ss_pred ccCceeccccccCCCcEEc--cCCCc-chHHhHHHHHhhhhHhcccCCCCCCCCccccccccC
Q 021263 229 EYDLTCAVCLDLVFNPYAL--SCGHL-FCKLCACSAASVMVFEGLKSASPDSKCPICREIIHI 288 (315)
Q Consensus 229 ~~~l~C~IC~~~~~~Pv~l--~CgH~-FC~~Ci~~~~~~~~~~~~~~~~~~~~CP~Cr~~v~~ 288 (315)
.++..|+||++...+++.+ ||||. ||..|+.+++. ....||+||+++..
T Consensus 6 ~~~~~C~IC~~~~~~~~~~~~pCgH~~~C~~C~~~~~~-----------~~~~CPiCR~~i~~ 57 (64)
T 2vje_A 6 NAIEPCVICQGRPKNGCIVHGKTGHLMACFTCAKKLKK-----------RNKPCPVCRQPIQM 57 (64)
T ss_dssp GGGSCCTTTSSSCSCEEEEETTEEEEEECHHHHHHHHH-----------TTCCCTTTCCCCCE
T ss_pred CCcCCCCcCCCCCCCEEEECCCCCChhhHHHHHHHHHH-----------cCCcCCCcCcchhc
Confidence 4677899999999999977 99999 89999998864 45689999998753
No 57
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=98.85 E-value=1.1e-09 Score=103.02 Aligned_cols=50 Identities=30% Similarity=0.564 Sum_probs=43.3
Q ss_pred cCceeccccccCCCcEEccCCCcchHHhHHHHHhhhhHhcccCCCCCCCCccccccccCC
Q 021263 230 YDLTCAVCLDLVFNPYALSCGHLFCKLCACSAASVMVFEGLKSASPDSKCPICREIIHIS 289 (315)
Q Consensus 230 ~~l~C~IC~~~~~~Pv~l~CgH~FC~~Ci~~~~~~~~~~~~~~~~~~~~CP~Cr~~v~~~ 289 (315)
....|+||++.+.+|+.++|||.||..|+..|.. .....||+||.++...
T Consensus 331 ~~~~C~ICle~~~~pv~lpCGH~FC~~Ci~~wl~----------~~~~~CP~CR~~i~~~ 380 (389)
T 2y1n_A 331 TFQLCKICAENDKDVKIEPCGHLMCTSCLTSWQE----------SEGQGCPFCRCEIKGT 380 (389)
T ss_dssp SSSBCTTTSSSBCCEEEETTCCEECHHHHHHHHH----------HTCSBCTTTCCBCCEE
T ss_pred CCCCCCccCcCCCCeEEeCCCChhhHHHHHHHHh----------cCCCCCCCCCCccCCc
Confidence 4479999999999999999999999999998864 2467899999997654
No 58
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.84 E-value=1.1e-09 Score=80.73 Aligned_cols=49 Identities=24% Similarity=0.561 Sum_probs=39.1
Q ss_pred cCceeccccccCCC--------------cEEc-cCCCcchHHhHHHHHhhhhHhcccCCCCCCCCccccccccCC
Q 021263 230 YDLTCAVCLDLVFN--------------PYAL-SCGHLFCKLCACSAASVMVFEGLKSASPDSKCPICREIIHIS 289 (315)
Q Consensus 230 ~~l~C~IC~~~~~~--------------Pv~l-~CgH~FC~~Ci~~~~~~~~~~~~~~~~~~~~CP~Cr~~v~~~ 289 (315)
++..|+||++.+.+ ++.+ +|||.||..||.+|+. ....||+||+++...
T Consensus 14 ~~~~C~IC~~~~~~~C~iC~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~-----------~~~~CP~CR~~~~~~ 77 (81)
T 2ecl_A 14 ECDTCAICRVQVMDACLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVK-----------QNNRCPLCQQDWVVQ 77 (81)
T ss_dssp CCSCBTTTTBCTTSCCTTHHHHTCTTTCCEEEETTSCEEEHHHHHHHTT-----------TCCBCTTTCCBCCEE
T ss_pred CCCCCcccChhhhccCcccccccCCCceEEEeCCCCCccChHHHHHHHH-----------hCCCCCCcCCCcchh
Confidence 45779999988876 4555 5999999999999964 346899999987654
No 59
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*
Probab=98.79 E-value=2.3e-09 Score=75.15 Aligned_cols=48 Identities=27% Similarity=0.605 Sum_probs=41.0
Q ss_pred cCceeccccccCCCcEEc--cCCCc-chHHhHHHHHhhhhHhcccCCCCCCCCccccccccC
Q 021263 230 YDLTCAVCLDLVFNPYAL--SCGHL-FCKLCACSAASVMVFEGLKSASPDSKCPICREIIHI 288 (315)
Q Consensus 230 ~~l~C~IC~~~~~~Pv~l--~CgH~-FC~~Ci~~~~~~~~~~~~~~~~~~~~CP~Cr~~v~~ 288 (315)
....|+||++...+++.+ ||||. ||..|+.+++. ....||+||.++..
T Consensus 6 ~~~~C~IC~~~~~~~~~~~~pCgH~~~C~~C~~~~~~-----------~~~~CPiCR~~i~~ 56 (63)
T 2vje_B 6 LLKPCSLCEKRPRDGNIIHGRTGHLVTCFHCARRLKK-----------AGASCPICKKEIQL 56 (63)
T ss_dssp GGSBCTTTSSSBSCEEEEETTEEEEEECHHHHHHHHH-----------TTCBCTTTCCBCCE
T ss_pred cCCCCcccCCcCCCeEEEecCCCCHhHHHHHHHHHHH-----------hCCcCCCcCchhhc
Confidence 457899999999999887 99998 99999998864 34789999998753
No 60
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=98.75 E-value=1.6e-09 Score=86.80 Aligned_cols=52 Identities=27% Similarity=0.703 Sum_probs=44.7
Q ss_pred ccCceeccccccCCCc-------EEccCCCcchHHhHHHHHhhhhHhcccCCCCCCCCccccccccCCCC
Q 021263 229 EYDLTCAVCLDLVFNP-------YALSCGHLFCKLCACSAASVMVFEGLKSASPDSKCPICREIIHISSI 291 (315)
Q Consensus 229 ~~~l~C~IC~~~~~~P-------v~l~CgH~FC~~Ci~~~~~~~~~~~~~~~~~~~~CP~Cr~~v~~~~~ 291 (315)
.+...|+||++.+.+| +.++|||.||..||.+|+. ....||+||..+...++
T Consensus 70 ~~~~~C~iC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~-----------~~~~CP~Cr~~~~~~~~ 128 (133)
T 4ap4_A 70 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLK-----------NANTCPTCRKKINHKRY 128 (133)
T ss_dssp SSSCBCTTTCCBHHHHHHTTCCEEEETTSBEEEHHHHHHHHH-----------HCSBCTTTCCBCCGGGE
T ss_pred CCCCCCCCCCCccccccccCcceEeCCCCChhhHHHHHHHHH-----------cCCCCCCCCCcCChhcc
Confidence 4678999999999887 7889999999999999975 35699999999887654
No 61
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A
Probab=98.74 E-value=2.8e-09 Score=78.24 Aligned_cols=47 Identities=32% Similarity=0.770 Sum_probs=40.1
Q ss_pred CccCceeccccccCCCcEEccCCCc-chHHhHHHHHhhhhHhcccCCCCCCCCccccccccCC
Q 021263 228 LEYDLTCAVCLDLVFNPYALSCGHL-FCKLCACSAASVMVFEGLKSASPDSKCPICREIIHIS 289 (315)
Q Consensus 228 l~~~l~C~IC~~~~~~Pv~l~CgH~-FC~~Ci~~~~~~~~~~~~~~~~~~~~CP~Cr~~v~~~ 289 (315)
+.+...|+||++.+.+|+.+||||. ||..|+..+ ..||+||.++...
T Consensus 15 l~~~~~C~IC~~~~~~~v~~pCgH~~~C~~C~~~~---------------~~CP~Cr~~i~~~ 62 (79)
T 2yho_A 15 LKEAMLCMVCCEEEINSTFCPCGHTVCCESCAAQL---------------QSCPVCRSRVEHV 62 (79)
T ss_dssp HHHHTBCTTTSSSBCCEEEETTCBCCBCHHHHTTC---------------SBCTTTCCBCCEE
T ss_pred CCCCCEeEEeCcccCcEEEECCCCHHHHHHHHHhc---------------CcCCCCCchhhCe
Confidence 4567899999999999999999999 999998432 4899999986654
No 62
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.73 E-value=5.4e-09 Score=74.44 Aligned_cols=44 Identities=30% Similarity=0.695 Sum_probs=38.9
Q ss_pred cCceeccccccCCCcEEccCCCc-chHHhHHHHHhhhhHhcccCCCCCCCCccccccccC
Q 021263 230 YDLTCAVCLDLVFNPYALSCGHL-FCKLCACSAASVMVFEGLKSASPDSKCPICREIIHI 288 (315)
Q Consensus 230 ~~l~C~IC~~~~~~Pv~l~CgH~-FC~~Ci~~~~~~~~~~~~~~~~~~~~CP~Cr~~v~~ 288 (315)
+...|+||++...+++.+||||. ||..|+.. ...||+||..+..
T Consensus 14 ~~~~C~IC~~~~~~~v~~pCgH~~~C~~C~~~---------------~~~CP~CR~~i~~ 58 (68)
T 2ea5_A 14 NSKDCVVCQNGTVNWVLLPCRHTCLCDGCVKY---------------FQQCPMCRQFVQE 58 (68)
T ss_dssp CSSCCSSSSSSCCCCEETTTTBCCSCTTHHHH---------------CSSCTTTCCCCCC
T ss_pred CCCCCCCcCcCCCCEEEECCCChhhhHHHHhc---------------CCCCCCCCcchhc
Confidence 57889999999999999999999 99999853 3689999998765
No 63
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A
Probab=98.72 E-value=3.9e-09 Score=73.52 Aligned_cols=50 Identities=20% Similarity=0.238 Sum_probs=43.0
Q ss_pred CceeccccccCCCcEEc-cCCCcchHHhHHHHHhhhhHhcccCCCCCCCCccccccccCCCC
Q 021263 231 DLTCAVCLDLVFNPYAL-SCGHLFCKLCACSAASVMVFEGLKSASPDSKCPICREIIHISSI 291 (315)
Q Consensus 231 ~l~C~IC~~~~~~Pv~l-~CgH~FC~~Ci~~~~~~~~~~~~~~~~~~~~CP~Cr~~v~~~~~ 291 (315)
.+.||||++++.|||.+ +|||+|++.||.+|+. ....||+++.++...++
T Consensus 3 ~~~CpIs~~~m~dPV~~~~sG~~yer~~I~~~l~-----------~~~~cP~t~~~L~~~~L 53 (61)
T 2bay_A 3 HMLCAISGKVPRRPVLSPKSRTIFEKSLLEQYVK-----------DTGNDPITNEPLSIEEI 53 (61)
T ss_dssp -CCCTTTCSCCSSEEEETTTTEEEEHHHHHHHHH-----------HHSBCTTTCCBCCGGGC
T ss_pred eEEecCCCCCCCCCEEeCCCCcEEcHHHHHHHHH-----------hCCCCcCCcCCCChhhc
Confidence 47899999999999998 8999999999999975 22459999999877655
No 64
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=98.68 E-value=1.2e-08 Score=79.00 Aligned_cols=48 Identities=19% Similarity=0.350 Sum_probs=39.4
Q ss_pred cCceeccccccCCCc------------------EEccCCCcchHHhHHHHHhhhhHhcccCCCCCCCCccccccccC
Q 021263 230 YDLTCAVCLDLVFNP------------------YALSCGHLFCKLCACSAASVMVFEGLKSASPDSKCPICREIIHI 288 (315)
Q Consensus 230 ~~l~C~IC~~~~~~P------------------v~l~CgH~FC~~Ci~~~~~~~~~~~~~~~~~~~~CP~Cr~~v~~ 288 (315)
++..|+||++.+.++ +.++|||.||..||.+|+. ....||+||+++..
T Consensus 36 ~~d~CaIC~~~~~~~c~~C~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~-----------~~~~CP~Cr~~~~~ 101 (106)
T 3dpl_R 36 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLK-----------TRQVCPLDNREWEF 101 (106)
T ss_dssp CSCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEETTSCEEEHHHHHHHHT-----------TCSBCSSSCSBCCE
T ss_pred CCCCCccCChhHhCcCchhhccccccCCccceEeecccCcEECHHHHHHHHH-----------cCCcCcCCCCccee
Confidence 457899999988865 3368999999999999975 46789999998543
No 65
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B
Probab=98.52 E-value=1.7e-08 Score=94.07 Aligned_cols=47 Identities=47% Similarity=0.942 Sum_probs=40.9
Q ss_pred cCccCceeccccccCCCcEEccCCCc-chHHhHHHHHhhhhHhcccCCCCCCCCccccccccC
Q 021263 227 KLEYDLTCAVCLDLVFNPYALSCGHL-FCKLCACSAASVMVFEGLKSASPDSKCPICREIIHI 288 (315)
Q Consensus 227 ~l~~~l~C~IC~~~~~~Pv~l~CgH~-FC~~Ci~~~~~~~~~~~~~~~~~~~~CP~Cr~~v~~ 288 (315)
.+.+...|+||++.+.+|+.+||||. ||..|+..+ ..||+||.++..
T Consensus 291 ~l~~~~~C~IC~~~~~~~v~lpCgH~~fC~~C~~~~---------------~~CP~CR~~i~~ 338 (345)
T 3t6p_A 291 RLQEERTCKVCMDKEVSVVFIPCGHLVVCQECAPSL---------------RKCPICRGIIKG 338 (345)
T ss_dssp HHHTTCBCTTTSSSBCCEEEETTCCEEECTTTGGGC---------------SBCTTTCCBCCE
T ss_pred hCcCCCCCCccCCcCCceEEcCCCChhHhHHHHhcC---------------CcCCCCCCCccC
Confidence 45678999999999999999999999 999998532 679999998764
No 66
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=98.37 E-value=4.7e-08 Score=76.92 Aligned_cols=48 Identities=21% Similarity=0.399 Sum_probs=0.9
Q ss_pred cCceeccccccCCCc-----------------EE-ccCCCcchHHhHHHHHhhhhHhcccCCCCCCCCccccccccC
Q 021263 230 YDLTCAVCLDLVFNP-----------------YA-LSCGHLFCKLCACSAASVMVFEGLKSASPDSKCPICREIIHI 288 (315)
Q Consensus 230 ~~l~C~IC~~~~~~P-----------------v~-l~CgH~FC~~Ci~~~~~~~~~~~~~~~~~~~~CP~Cr~~v~~ 288 (315)
++..|+||++.+.+| +. ++|+|.||..||.+|+. ....||+||.++..
T Consensus 47 ~~d~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~C~H~FH~~CI~~Wl~-----------~~~~CP~Cr~~~~~ 112 (117)
T 4a0k_B 47 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLK-----------TRQVCPLDNREWEF 112 (117)
T ss_dssp CC---------------------------------------------------------------------------
T ss_pred CCCcCeECChhhcCcChhhhcccccccccccccccCCcCceEcHHHHHHHHH-----------cCCcCCCCCCeeee
Confidence 346899999998764 22 48999999999999964 45789999998643
No 67
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.29 E-value=5.5e-07 Score=66.03 Aligned_cols=51 Identities=18% Similarity=0.356 Sum_probs=41.0
Q ss_pred cCceeccccccC--CCcEEccCC-----CcchHHhHHHHHhhhhHhcccCCCCCCCCccccccccCC
Q 021263 230 YDLTCAVCLDLV--FNPYALSCG-----HLFCKLCACSAASVMVFEGLKSASPDSKCPICREIIHIS 289 (315)
Q Consensus 230 ~~l~C~IC~~~~--~~Pv~l~Cg-----H~FC~~Ci~~~~~~~~~~~~~~~~~~~~CP~Cr~~v~~~ 289 (315)
+...|+||++.+ .+++.+||. |.|+..||.+|+.. .....||+||..+...
T Consensus 14 ~~~~C~IC~~~~~~~~~l~~pC~C~Gs~h~fH~~Cl~~Wl~~---------~~~~~CplCr~~~~~~ 71 (80)
T 2d8s_A 14 SQDICRICHCEGDDESPLITPCHCTGSLHFVHQACLQQWIKS---------SDTRCCELCKYEFIME 71 (80)
T ss_dssp TSCCCSSSCCCCCSSSCEECSSSCCSSSCCEETTHHHHHHHH---------HCCSBCSSSCCBCCCC
T ss_pred CCCCCeEcCccccCCCeeEeccccCCcCCeeCHHHHHHHHhh---------CCCCCCCCCCCeeecC
Confidence 467899999876 467888996 99999999999751 1346899999997654
No 68
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.89 E-value=1.7e-05 Score=57.06 Aligned_cols=50 Identities=18% Similarity=0.480 Sum_probs=39.2
Q ss_pred cCceeccccccCCCcEE-ccCCCcchHHhHHHHHhhhhHhcccCCCCCCCCccccccccC
Q 021263 230 YDLTCAVCLDLVFNPYA-LSCGHLFCKLCACSAASVMVFEGLKSASPDSKCPICREIIHI 288 (315)
Q Consensus 230 ~~l~C~IC~~~~~~Pv~-l~CgH~FC~~Ci~~~~~~~~~~~~~~~~~~~~CP~Cr~~v~~ 288 (315)
....|+||.+.+..-.. ..|+|.|...||.+|++ ......||.||.....
T Consensus 14 ~i~~C~IC~~~i~~g~~C~~C~h~fH~~Ci~kWl~---------~~~~~~CP~Cr~~w~~ 64 (74)
T 2ct0_A 14 AVKICNICHSLLIQGQSCETCGIRMHLPCVAKYFQ---------SNAEPRCPHCNDYWPH 64 (74)
T ss_dssp SSCBCSSSCCBCSSSEECSSSCCEECHHHHHHHST---------TCSSCCCTTTCSCCCS
T ss_pred CCCcCcchhhHcccCCccCCCCchhhHHHHHHHHH---------hcCCCCCCCCcCcCCC
Confidence 45789999998875544 47999999999999965 1234789999988553
No 69
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}
Probab=97.78 E-value=1.4e-05 Score=60.13 Aligned_cols=46 Identities=26% Similarity=0.535 Sum_probs=36.4
Q ss_pred eeccccccCCCc-EEccCCCcchHHhHHHHHhhhhHhcccCCCCCCCCccccccccC
Q 021263 233 TCAVCLDLVFNP-YALSCGHLFCKLCACSAASVMVFEGLKSASPDSKCPICREIIHI 288 (315)
Q Consensus 233 ~C~IC~~~~~~P-v~l~CgH~FC~~Ci~~~~~~~~~~~~~~~~~~~~CP~Cr~~v~~ 288 (315)
.|++|.-.+..- ..+||.|.||.+|+..|.. .....||.|+.+|..
T Consensus 3 fC~~C~~Pi~iygRmIPCkHvFCydCa~~~~~----------~~~k~Cp~C~~~V~r 49 (101)
T 3vk6_A 3 FCDKCGLPIKVYGRMIPCKHVFCYDCAILHEK----------KGDKMCPGCSDPVQR 49 (101)
T ss_dssp BCTTTCSBCSEEEEEETTCCEEEHHHHHHHHH----------TTCCBCTTTCCBCSE
T ss_pred ecCccCCCeEEEeeeccccccHHHHHHHHHHh----------ccCCCCcCcCCeeee
Confidence 588888766544 3479999999999988854 467899999998654
No 70
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Probab=97.50 E-value=6.6e-05 Score=51.64 Aligned_cols=50 Identities=20% Similarity=0.417 Sum_probs=39.3
Q ss_pred cCceeccccccCCCcEEccCC--C---cchHHhHHHHHhhhhHhcccCCCCCCCCccccccccC
Q 021263 230 YDLTCAVCLDLVFNPYALSCG--H---LFCKLCACSAASVMVFEGLKSASPDSKCPICREIIHI 288 (315)
Q Consensus 230 ~~l~C~IC~~~~~~Pv~l~Cg--H---~FC~~Ci~~~~~~~~~~~~~~~~~~~~CP~Cr~~v~~ 288 (315)
+...|.||++...+|..+||. + .|...|+.+|+.. ++...||+|+..+..
T Consensus 5 ~~~~CrIC~~~~~~~l~~PC~C~gs~~~~H~~Cl~~W~~~---------~~~~~C~~C~~~~~~ 59 (60)
T 1vyx_A 5 DVPVCWICNEELGNERFRACGCTGELENVHRSCLSTWLTI---------SRNTACQICGVVYNT 59 (60)
T ss_dssp SCCEETTTTEECSCCCCCSCCCSSGGGSCCHHHHHHHHHH---------HTCSBCTTTCCBCCC
T ss_pred CCCEeEEeecCCCCceecCcCCCCchhhhHHHHHHHHHHh---------CCCCccCCCCCeeec
Confidence 567899999887778778865 4 7999999999751 245789999988754
No 71
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}
Probab=97.40 E-value=5.5e-05 Score=69.45 Aligned_cols=61 Identities=16% Similarity=0.387 Sum_probs=40.6
Q ss_pred ccCceeccccccCCC----cEE----ccCCCcchHHhHHHHHhhhhHhcccCCCCCCCCccccccccCC
Q 021263 229 EYDLTCAVCLDLVFN----PYA----LSCGHLFCKLCACSAASVMVFEGLKSASPDSKCPICREIIHIS 289 (315)
Q Consensus 229 ~~~l~C~IC~~~~~~----Pv~----l~CgH~FC~~Ci~~~~~~~~~~~~~~~~~~~~CP~Cr~~v~~~ 289 (315)
+....|+||...+.+ |.. ..|||.|...|+.+|++........-..-.+.||.||+++..+
T Consensus 306 e~~~ECaICys~~l~~g~lPdk~C~n~~C~h~FH~~CL~kWLrs~~~sRqSFnvi~G~CPyCr~pIs~s 374 (381)
T 3k1l_B 306 NEELRCNICFAYRLDGGEVPLVSCDNAKCVLKCHAVCLEEWFKTLMDGKTFLEVSFGQCPFCKAKLSTS 374 (381)
T ss_dssp CSCCSCSSSCCSSCTTCCCCCBCCSCTTCCCCBCSGGGHHHHHHHHSSSCTTTCCEEECTTTCCEEEGG
T ss_pred cCCccCcccceeecCCCCCccccccCCccCCccchHHHHHHHHhCCCccccccccCCCCCCCCCcCCcc
Confidence 356789999998776 322 3799999999999998521111000011236899999987643
No 72
>3m62_A Ubiquitin conjugation factor E4; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} PDB: 3m63_A* 2qiz_A 2qj0_A
Probab=97.34 E-value=0.00022 Score=73.67 Aligned_cols=74 Identities=8% Similarity=0.047 Sum_probs=63.7
Q ss_pred cCccCceeccccccCCCcEEccCC-CcchHHhHHHHHhhhhHhcccCCCCCCCCccccccccCCCC--cHHHHHHHHHHH
Q 021263 227 KLEYDLTCAVCLDLVFNPYALSCG-HLFCKLCACSAASVMVFEGLKSASPDSKCPICREIIHISSI--GAGWQLGCKETW 303 (315)
Q Consensus 227 ~l~~~l~C~IC~~~~~~Pv~l~Cg-H~FC~~Ci~~~~~~~~~~~~~~~~~~~~CP~Cr~~v~~~~~--n~~l~~lv~~~~ 303 (315)
.+.+.+.|||-.+++.|||+++.| ++|-+.+|.+|+. ....||.-|.++....+ |..|+..|..|.
T Consensus 887 ~iP~~F~cPIs~~lM~DPVilpsG~~TydR~~I~~wl~-----------~~~tdP~Tr~~L~~~~liPN~~Lk~~I~~w~ 955 (968)
T 3m62_A 887 DVPDEFLDPLMYTIMKDPVILPASKMNIDRSTIKAHLL-----------SDSTDPFNRMPLKLEDVTPNEELRQKILCFK 955 (968)
T ss_dssp CSCGGGBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHT-----------TCCBCTTTCCBCCGGGCEECHHHHHHHHHHH
T ss_pred CCcHHhCCcchhhHHhCCeEcCCCCEEECHHHHHHHHh-----------cCCCCCCCCCCCCcccccccHHHHHHHHHHH
Confidence 345789999999999999999998 6999999999974 35689999999988776 999999999999
Q ss_pred HhcccccC
Q 021263 304 QEYMRKQS 311 (315)
Q Consensus 304 ~e~~~~~~ 311 (315)
.++.++.+
T Consensus 956 ~~~~~~~~ 963 (968)
T 3m62_A 956 KQKKEEAK 963 (968)
T ss_dssp HHHHTTC-
T ss_pred HHHHhhhc
Confidence 88775543
No 73
>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}
Probab=96.24 E-value=0.0016 Score=49.12 Aligned_cols=32 Identities=16% Similarity=0.480 Sum_probs=27.4
Q ss_pred cCceecccccc-CCCcEE--ccCCCcchHHhHHHH
Q 021263 230 YDLTCAVCLDL-VFNPYA--LSCGHLFCKLCACSA 261 (315)
Q Consensus 230 ~~l~C~IC~~~-~~~Pv~--l~CgH~FC~~Ci~~~ 261 (315)
+++.|+||.+. +.+|+. +.|+|+||..|+..+
T Consensus 2 ee~~C~~C~~~~~~~av~~C~~C~~~~C~~Cl~~~ 36 (101)
T 2jun_A 2 EKVLCQFCDQDPAQDAVKTCVTCEVSYCDECLKAT 36 (101)
T ss_dssp CCCBCTTCCSSSCCBCCEEETTTTEEECHHHHHHH
T ss_pred CCCCCcCCCCCCCCCceEECCcCChHHhHHHCHHH
Confidence 46889999975 778887 899999999999873
No 74
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=95.33 E-value=0.015 Score=50.97 Aligned_cols=50 Identities=18% Similarity=0.495 Sum_probs=38.8
Q ss_pred CceeccccccCCCcEE-ccCCCcchHHhHHHHHhhhhHhcccCCCCCCCCccccccccCC
Q 021263 231 DLTCAVCLDLVFNPYA-LSCGHLFCKLCACSAASVMVFEGLKSASPDSKCPICREIIHIS 289 (315)
Q Consensus 231 ~l~C~IC~~~~~~Pv~-l~CgH~FC~~Ci~~~~~~~~~~~~~~~~~~~~CP~Cr~~v~~~ 289 (315)
-..|.+|.++...-+. ..|+|.|...|+..|++ ......||.|+..-...
T Consensus 180 i~~C~iC~~iv~~g~~C~~C~~~~H~~C~~~~~~---------~~~~~~CP~C~~~W~~~ 230 (238)
T 3nw0_A 180 VKICNICHSLLIQGQSCETCGIRMHLPCVAKYFQ---------SNAEPRCPHCNDYWPHE 230 (238)
T ss_dssp CCBCTTTCSBCSSCEECSSSCCEECHHHHHHHTT---------TCSSCBCTTTCCBCCSC
T ss_pred CCcCcchhhHHhCCcccCccChHHHHHHHHHHHH---------hCCCCCCCCCCCCCCCC
Confidence 5779999998876554 35999999999999864 13457899999875443
No 75
>2cs3_A Protein C14ORF4, MY039 protein; ZF-C3HC4 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.3
Probab=92.57 E-value=0.39 Score=34.25 Aligned_cols=34 Identities=21% Similarity=0.461 Sum_probs=27.5
Q ss_pred cCceeccccccCCCcEEcc----CCCcchHHhHHHHHh
Q 021263 230 YDLTCAVCLDLVFNPYALS----CGHLFCKLCACSAAS 263 (315)
Q Consensus 230 ~~l~C~IC~~~~~~Pv~l~----CgH~FC~~Ci~~~~~ 263 (315)
..+.|.+|.+-+.+.-... =+|.||-.|-....+
T Consensus 14 a~l~CtlC~erLEdtHFVQCPsv~~HkFCFpCsr~sIk 51 (93)
T 2cs3_A 14 GPLCCTICHERLEDTHFVQCPSVPSHKFCFPCSRESIK 51 (93)
T ss_dssp CSCCCSSSCSCCSSTTSEECSSCSSCEECHHHHHHHHH
T ss_pred CeeEeecchhhhccCceeeCCCccCCeeeccccHHHHH
Confidence 5689999999999874433 479999999988765
No 76
>3i2d_A E3 SUMO-protein ligase SIZ1; signal transduction, replication, ring E3, PIAS, ubiquitin, UBC9, metal-binding, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=90.38 E-value=0.28 Score=45.49 Aligned_cols=66 Identities=18% Similarity=0.323 Sum_probs=47.7
Q ss_pred cCceeccccccCCCcEE-ccCCCcchHHhHHHHHhhhhHhcccCCCCCCCCccccccccCCCC--cHHHHHHHHHH
Q 021263 230 YDLTCAVCLDLVFNPYA-LSCGHLFCKLCACSAASVMVFEGLKSASPDSKCPICREIIHISSI--GAGWQLGCKET 302 (315)
Q Consensus 230 ~~l~C~IC~~~~~~Pv~-l~CgH~FC~~Ci~~~~~~~~~~~~~~~~~~~~CP~Cr~~v~~~~~--n~~l~~lv~~~ 302 (315)
-.+.||+-...+..|+. ..|.|.-|-+-. .++.. . .......||+|...+...++ +..+..++...
T Consensus 248 vSL~CPlS~~ri~~PvRg~~C~HlQCFDl~-sfL~~---~---~~~~~W~CPIC~k~~~~~dL~ID~~~~~IL~~~ 316 (371)
T 3i2d_A 248 MSLQCPISYTRMKYPSKSINCKHLQCFDAL-WFLHS---Q---LQIPTWQCPVCQIDIALENLAISEFVDDILQNC 316 (371)
T ss_dssp EESBCTTTSSBCSSEEEETTCCSSCCEEHH-HHHHH---H---HHSCCCBCTTTCCBCCGGGEEEBHHHHHHHTTS
T ss_pred EeecCCCccccccccCcCCcCCCcceECHH-HHHHH---h---hcCCceeCCCCCcccCHHHeeEcHHHHHHHHhc
Confidence 46999999999999998 579999666542 22210 1 11478999999999888876 77777776543
No 77
>4fo9_A E3 SUMO-protein ligase PIAS2; E3 ligase, pinit domain, SP-ring domain, structural GE consortium, SGC; 2.39A {Homo sapiens} PDB: 2asq_B
Probab=89.20 E-value=0.39 Score=44.37 Aligned_cols=65 Identities=20% Similarity=0.344 Sum_probs=47.0
Q ss_pred cCceeccccccCCCcEE-ccCCCcchHHhHHHHHhhhhHhcccCCCCCCCCccccccccCCCC--cHHHHHHHHH
Q 021263 230 YDLTCAVCLDLVFNPYA-LSCGHLFCKLCACSAASVMVFEGLKSASPDSKCPICREIIHISSI--GAGWQLGCKE 301 (315)
Q Consensus 230 ~~l~C~IC~~~~~~Pv~-l~CgH~FC~~Ci~~~~~~~~~~~~~~~~~~~~CP~Cr~~v~~~~~--n~~l~~lv~~ 301 (315)
-.+.||+-...+..|+. ..|.|.-|-+-. .++.. . .......||+|...+...++ +..+.+++..
T Consensus 214 vSL~CPlS~~ri~~P~Rg~~C~HlqCFDl~-sfL~~---~---~~~~~W~CPiC~k~~~~~dL~ID~~~~~IL~~ 281 (360)
T 4fo9_A 214 VSLMCPLGKMRLTIPCRAVTCTHLQCFDAA-LYLQM---N---EKKPTWICPVCDKKAAYESLILDGLFMEILND 281 (360)
T ss_dssp EESBCTTTCSBCSSEEEETTCCCCCCEEHH-HHHHH---H---HHSCCCBCTTTCSBCCGGGEEEBHHHHHHHTT
T ss_pred EeeeCCCccceeccCCcCCCCCCCccCCHH-HHHHH---H---hhCCCeECCCCCcccCHHHeEEcHHHHHHHHh
Confidence 46899999999999988 579999666532 22211 1 11467899999999888776 7777777654
No 78
>2ko5_A Ring finger protein Z; lassa fever virus-Z, negative regulator of EIF4E, cytoplasm, HOST-virus interaction, lipoprotein, membrane; NMR {Lassa virus josiah}
Probab=80.20 E-value=1 Score=33.23 Aligned_cols=48 Identities=23% Similarity=0.473 Sum_probs=34.8
Q ss_pred ccCceeccccccCCCcEEccC-CCcchHHhHHHHHhhhhHhcccCCCCCCCCccccccccCC
Q 021263 229 EYDLTCAVCLDLVFNPYALSC-GHLFCKLCACSAASVMVFEGLKSASPDSKCPICREIIHIS 289 (315)
Q Consensus 229 ~~~l~C~IC~~~~~~Pv~l~C-gH~FC~~Ci~~~~~~~~~~~~~~~~~~~~CP~Cr~~v~~~ 289 (315)
-..+-|-.|...... .+.| .|-.|..|+...+ +....||+|..++..+
T Consensus 26 ~G~~nCKsCWf~~k~--LV~C~dHYLCl~CLtlmL-----------~~SdrCpIC~~pLPtk 74 (99)
T 2ko5_A 26 LGPQFCKSCWFENKG--LVECNNHYLCLNCLTLLL-----------SVSNRCPICKMPLPTK 74 (99)
T ss_dssp SCCCCCCSSCSCCSS--EEECSSCEEEHHHHHHTC-----------SSSSEETTTTEECCCC
T ss_pred cCcccChhhccccCC--eeeecchhhHHHHHHHHH-----------hhccCCcccCCcCCcc
Confidence 345789999865542 3455 5899999997653 3678999999886643
No 79
>2lbm_A Transcriptional regulator ATRX; metal binding protein-structural protein compl; HET: M3L; NMR {Homo sapiens} PDB: 2ld1_A
Probab=68.21 E-value=8.5 Score=30.59 Aligned_cols=53 Identities=21% Similarity=0.375 Sum_probs=33.1
Q ss_pred cCceeccccccCCCcEE--ccCCCcchHHhHHHHHhhhhHhcccCCCCCCCCccccc
Q 021263 230 YDLTCAVCLDLVFNPYA--LSCGHLFCKLCACSAASVMVFEGLKSASPDSKCPICRE 284 (315)
Q Consensus 230 ~~l~C~IC~~~~~~Pv~--l~CgH~FC~~Ci~~~~~~~~~~~~~~~~~~~~CP~Cr~ 284 (315)
.+..|.+|.+-=. +. -.|-..||..|+.+.+....+.......+...||.|+.
T Consensus 62 ~~d~C~vC~~GG~--LlcCD~Cpr~Fh~~Cl~p~l~~~~l~~i~~p~~~W~C~~C~~ 116 (142)
T 2lbm_A 62 MDEQCRWCAEGGN--LICCDFCHNAFCKKCILRNLGRKELSTIMDENNQWYCYICHP 116 (142)
T ss_dssp CBCSCSSSCCCSS--EEECSSSCCEEEHHHHHHHTCHHHHHHHHTSTTCCCCTTTCC
T ss_pred CCCeecccCCCCc--EEeCCCCCCeeeHhhcCCCCChhhhhhcccCCCCCEeecccC
Confidence 4577899986332 22 26999999999987643111111111257899999964
No 80
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=66.84 E-value=6.7 Score=28.50 Aligned_cols=48 Identities=21% Similarity=0.527 Sum_probs=33.8
Q ss_pred cCceeccccccCC-----CcEE--ccCCCcchHHhHHHHHhhhhHhcccCCCCCCCCcccccccc
Q 021263 230 YDLTCAVCLDLVF-----NPYA--LSCGHLFCKLCACSAASVMVFEGLKSASPDSKCPICREIIH 287 (315)
Q Consensus 230 ~~l~C~IC~~~~~-----~Pv~--l~CgH~FC~~Ci~~~~~~~~~~~~~~~~~~~~CP~Cr~~v~ 287 (315)
..-.|.||.+.+- ++.. -.|+-..|+.|..--.+ .+...||-|.+.+.
T Consensus 15 ~~qiCqiCGD~VG~~~~Ge~FVAC~eC~FPvCrpCyEYErk----------eG~q~CpqCktrYk 69 (93)
T 1weo_A 15 DGQFCEICGDQIGLTVEGDLFVACNECGFPACRPCYEYERR----------EGTQNCPQCKTRYK 69 (93)
T ss_dssp SSCBCSSSCCBCCBCSSSSBCCSCSSSCCCCCHHHHHHHHH----------TSCSSCTTTCCCCC
T ss_pred CCCccccccCccccCCCCCEEEeeeccCChhhHHHHHHHHh----------ccCccccccCCccc
Confidence 3468999998633 2222 25888999999853222 57789999998875
No 81
>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens}
Probab=61.99 E-value=9.6 Score=25.97 Aligned_cols=48 Identities=21% Similarity=0.405 Sum_probs=31.8
Q ss_pred cCceeccccccCCCcEEc--cCCCcchHHhHHHHHhhhhHhcccCCCCCCCCccccccc
Q 021263 230 YDLTCAVCLDLVFNPYAL--SCGHLFCKLCACSAASVMVFEGLKSASPDSKCPICREII 286 (315)
Q Consensus 230 ~~l~C~IC~~~~~~Pv~l--~CgH~FC~~Ci~~~~~~~~~~~~~~~~~~~~CP~Cr~~v 286 (315)
..-.|.||.+- .-+.+ .|...|...|+...+. ....+...||.|....
T Consensus 11 ~~~~C~vC~~~--~~ll~Cd~C~~~~H~~Cl~P~l~-------~~P~g~W~C~~C~~~~ 60 (66)
T 2lri_C 11 PGARCGVCGDG--TDVLRCTHCAAAFHWRCHFPAGT-------SRPGTGLRCRSCSGDV 60 (66)
T ss_dssp TTCCCTTTSCC--TTCEECSSSCCEECHHHHCTTTC-------CCCSSSCCCTTTTTCC
T ss_pred CCCCcCCCCCC--CeEEECCCCCCceecccCCCccC-------cCCCCCEECccccCCC
Confidence 35679999863 22332 6999999999854421 1124668999997653
No 82
>3ql9_A Transcriptional regulator ATRX; zinc finger, transcription, lysine trimethylation, protein, histone-binding protein, transcription-structural complex; HET: M3L; 0.93A {Homo sapiens} PDB: 3qla_A* 3qlc_A 3qln_A 2jm1_A
Probab=60.84 E-value=12 Score=29.10 Aligned_cols=68 Identities=18% Similarity=0.297 Sum_probs=38.5
Q ss_pred CceeccccccCCCcEEccCCCcchHHhHHHHHhhhhHhcccCCCCCCCCccccccccCCCCcHHHHHHHHHHH
Q 021263 231 DLTCAVCLDLVFNPYALSCGHLFCKLCACSAASVMVFEGLKSASPDSKCPICREIIHISSIGAGWQLGCKETW 303 (315)
Q Consensus 231 ~l~C~IC~~~~~~Pv~l~CgH~FC~~Ci~~~~~~~~~~~~~~~~~~~~CP~Cr~~v~~~~~n~~l~~lv~~~~ 303 (315)
+..|.+|.+--.-..--.|-..||..||.+.+....++..........|+.|+. .....|+.++.+..
T Consensus 57 ~~~C~vC~dGG~LlcCd~Cpr~Fc~~Cl~~~lg~~~l~~i~~~~~~W~C~~C~~-----~pl~~L~~~C~~v~ 124 (129)
T 3ql9_A 57 DEQCRWCAEGGNLICCDFCHNAFCKKCILRNLGRRELSTIMDENNQWYCYICHP-----EPLLDLVTACNSVY 124 (129)
T ss_dssp BSSCTTTCCCSEEEECSSSSCEEEHHHHHHHTCHHHHHHHTCTTSCCCCTTTCC-----GGGHHHHHHHHHHH
T ss_pred CCcCeecCCCCeeEecCCCchhhhHHHhCCCcchhHHHHhccCCCCeEcCCcCC-----HHHHHHHHHHHHHH
Confidence 455999986322111126899999999987532111111111257799999933 23455555555543
No 83
>1wil_A KIAA1045 protein; ring finger domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: g.50.1.3
Probab=60.42 E-value=11 Score=27.15 Aligned_cols=34 Identities=21% Similarity=0.342 Sum_probs=23.7
Q ss_pred CccCceeccccccCCCcEE--ccCCCcchHHhHHHH
Q 021263 228 LEYDLTCAVCLDLVFNPYA--LSCGHLFCKLCACSA 261 (315)
Q Consensus 228 l~~~l~C~IC~~~~~~Pv~--l~CgH~FC~~Ci~~~ 261 (315)
+..+..|+||...-.+-.. --|+-.|...|+.+.
T Consensus 12 ~~~D~~C~VC~~~t~~~l~pCRvC~RvfH~~CL~r~ 47 (89)
T 1wil_A 12 VVNDEMCDVCEVWTAESLFPCRVCTRVFHDGCLRRM 47 (89)
T ss_dssp CCCSCCCTTTCCCCSSCCSSCSSSSSCCCHHHHHHH
T ss_pred CCCCcccCccccccccceeccccccccccHhhcccc
Confidence 3467889999754333222 248999999999874
No 84
>3mjh_B Early endosome antigen 1; protein-zinc finger complex, beta BETA alpha fold, beta HAIR RAB5A GTPase, EEA1, protein transport; HET: GTP; 2.03A {Homo sapiens}
Probab=59.22 E-value=1.7 Score=25.78 Aligned_cols=17 Identities=12% Similarity=0.331 Sum_probs=13.4
Q ss_pred cCceeccccccCCCcEE
Q 021263 230 YDLTCAVCLDLVFNPYA 246 (315)
Q Consensus 230 ~~l~C~IC~~~~~~Pv~ 246 (315)
+.+.||+|+..+..|-.
T Consensus 4 EGFiCP~C~~~l~s~~~ 20 (34)
T 3mjh_B 4 EGFICPQCMKSLGSADE 20 (34)
T ss_dssp EEEECTTTCCEESSHHH
T ss_pred cccCCcHHHHHcCCHHH
Confidence 46899999998887643
No 85
>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A*
Probab=57.65 E-value=6.6 Score=27.24 Aligned_cols=52 Identities=19% Similarity=0.276 Sum_probs=33.4
Q ss_pred cCceeccccccCCC-cEEc--cCCCcchHHhHHHHHhhhhHhcccCCCCCCCCccccccccC
Q 021263 230 YDLTCAVCLDLVFN-PYAL--SCGHLFCKLCACSAASVMVFEGLKSASPDSKCPICREIIHI 288 (315)
Q Consensus 230 ~~l~C~IC~~~~~~-Pv~l--~CgH~FC~~Ci~~~~~~~~~~~~~~~~~~~~CP~Cr~~v~~ 288 (315)
+...|+||...-.. .++. .|...|...|+.... .........||.|+..+..
T Consensus 17 ~~~~C~~C~~~~~~~~mi~CD~C~~wfH~~Cv~~~~-------~~~~~~~w~C~~C~~~~~k 71 (75)
T 2k16_A 17 QIWICPGCNKPDDGSPMIGCDDCDDWYHWPCVGIMA-------APPEEMQWFCPKCANKIKK 71 (75)
T ss_dssp EEECBTTTTBCCSSCCEEECSSSSSEEEHHHHTCSS-------CCCSSSCCCCTTTHHHHCS
T ss_pred CCcCCCCCCCCCCCCCEEEcCCCCcccccccCCCCc-------cCCCCCCEEChhccCchhh
Confidence 45679999876443 2333 588889999984321 1111257889999876543
No 86
>1vfy_A Phosphatidylinositol-3-phosphate binding FYVE domain of protein VPS27; endosome maturation, intracellular trafficking; 1.15A {Saccharomyces cerevisiae} SCOP: g.50.1.1
Probab=55.72 E-value=5.5 Score=27.66 Aligned_cols=29 Identities=24% Similarity=0.511 Sum_probs=21.2
Q ss_pred CceeccccccCCCcEE----ccCCCcchHHhHH
Q 021263 231 DLTCAVCLDLVFNPYA----LSCGHLFCKLCAC 259 (315)
Q Consensus 231 ~l~C~IC~~~~~~Pv~----l~CgH~FC~~Ci~ 259 (315)
+-.|.+|...|.--.. -.||..||..|..
T Consensus 11 ~~~C~~C~~~F~~~~RrHHCR~CG~v~C~~Cs~ 43 (73)
T 1vfy_A 11 SDACMICSKKFSLLNRKHHCRSCGGVFCQEHSS 43 (73)
T ss_dssp CSBCTTTCCBCBTTBCCEECTTTCCEECGGGSC
T ss_pred CCcccCCCCccCCccccccCCCCCEEEcccccC
Confidence 3479999987653211 3799999999964
No 87
>4g9i_A Hydrogenase maturation protein HYPF; zinc finger, ATP binding, carbamoyla transferase; 4.50A {Thermococcus kodakarensis}
Probab=55.66 E-value=4.1 Score=41.54 Aligned_cols=56 Identities=23% Similarity=0.603 Sum_probs=39.8
Q ss_pred cCceeccccccCCCc---------E-EccCCCcc--------------------hHHhHHHHHhhhhHhcccCCCCCCCC
Q 021263 230 YDLTCAVCLDLVFNP---------Y-ALSCGHLF--------------------CKLCACSAASVMVFEGLKSASPDSKC 279 (315)
Q Consensus 230 ~~l~C~IC~~~~~~P---------v-~l~CgH~F--------------------C~~Ci~~~~~~~~~~~~~~~~~~~~C 279 (315)
+.-+|+-|+.-+.|| + .+.||..| |..|..++-. -...+-+.+...|
T Consensus 105 D~a~C~~Cl~e~~dp~~rry~ypF~nCt~CGPR~tii~~lPYDR~~TsM~~F~mC~~C~~EY~d---p~dRRfhAqp~aC 181 (772)
T 4g9i_A 105 DIAICDDCLRELFDPTNKRYMYPFIVCTNCGPRFTIIEDLPYDRENTTMKEFPMCDFCRSEYED---PLNRRYHAEPTAC 181 (772)
T ss_dssp CCCCCHHHHHHHSSTTSTTTTCTTCCCTTSSCCGGGCCSSSCCGGGSGGGGSCCCHHHHHHHHC---SSSTTTTCTTCCC
T ss_pred chhhhHHHHHHhcCCCCCccCCccccCCCCCchhhhhhcCCCCCCCCcCCCCCCChhHHHHhCC---CCCCCCcCCCCCC
Confidence 568899999888887 1 25788887 9999988743 1112334567899
Q ss_pred ccccccccC
Q 021263 280 PICREIIHI 288 (315)
Q Consensus 280 P~Cr~~v~~ 288 (315)
|.|.-.+..
T Consensus 182 ~~CGP~l~l 190 (772)
T 4g9i_A 182 PVCGPSYRL 190 (772)
T ss_dssp TTTSCCEEE
T ss_pred ccCCceEEE
Confidence 999876543
No 88
>3ttc_A HYPF, transcriptional regulatory protein; Zn finger, nucleotide binding, hydrogenase maturation factor transferase; HET: ADP; 1.86A {Escherichia coli} PDB: 3tsp_A* 3tsu_A* 3ttf_A* 3ttd_A 3tsq_A
Probab=55.62 E-value=4.4 Score=40.50 Aligned_cols=54 Identities=24% Similarity=0.512 Sum_probs=38.2
Q ss_pred cCceeccccccCCCc---------E-EccCCCcc--------------------hHHhHHHHHhhhhHhcccCCCCCCCC
Q 021263 230 YDLTCAVCLDLVFNP---------Y-ALSCGHLF--------------------CKLCACSAASVMVFEGLKSASPDSKC 279 (315)
Q Consensus 230 ~~l~C~IC~~~~~~P---------v-~l~CgH~F--------------------C~~Ci~~~~~~~~~~~~~~~~~~~~C 279 (315)
+.-+|+-|+.-+.|| + .+.||..| |..|..++-. -...+-+.+...|
T Consensus 16 D~a~C~~Cl~e~~dp~~Rry~YpF~nCt~CGPR~tii~~lPYDR~~TsM~~F~mC~~C~~EY~d---p~dRRfHAqp~aC 92 (657)
T 3ttc_A 16 DAATCPACLAEMNTPGERRYRYPFINCTHCGPRFTIIRAMPYDRPFTVMAAFPLCPACDKEYRD---PLDRRFHAQPVAC 92 (657)
T ss_dssp CBCCCHHHHHHHTSTTSTTTTCTTCCBTTBBCSGGGBSSSSCSGGGBGGGGSCCCHHHHHHHHC---TTSTTTTCTTCCC
T ss_pred chhhhHHHHHHhcCCCCcccCCccccCcCCCchHHhcccCCCCCCCCcccCCCCChHHHHHhCC---CCCCcCcCCCCcC
Confidence 567899999887776 1 25688877 9999988743 1122334567899
Q ss_pred ccccccc
Q 021263 280 PICREII 286 (315)
Q Consensus 280 P~Cr~~v 286 (315)
|.|.-.+
T Consensus 93 p~CGP~l 99 (657)
T 3ttc_A 93 PECGPYL 99 (657)
T ss_dssp TTTSCCE
T ss_pred cccCccc
Confidence 9997766
No 89
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=54.46 E-value=4.7 Score=31.29 Aligned_cols=30 Identities=23% Similarity=0.593 Sum_probs=21.7
Q ss_pred CceeccccccCCCcE----EccCCCcchHHhHHH
Q 021263 231 DLTCAVCLDLVFNPY----ALSCGHLFCKLCACS 260 (315)
Q Consensus 231 ~l~C~IC~~~~~~Pv----~l~CgH~FC~~Ci~~ 260 (315)
...|.+|...|.--. --.||+.||..|...
T Consensus 69 ~~~C~~C~~~Fs~~~RrHHCR~CG~vfC~~Cs~~ 102 (125)
T 1joc_A 69 VQNCMACGKGFSVTVRRHHCRQCGNIFCAECSAK 102 (125)
T ss_dssp CCBCTTTCCBCCSSSCCEECTTTCCEECGGGSCE
T ss_pred CCCCcCcCCccccccccccCCCCCeEEChHHhCC
Confidence 457999998765321 137999999999743
No 90
>2gmg_A Hypothetical protein PF0610; winged-helix like protein with metal binding site, structura genomics, PSI, protein structure initiative; NMR {Pyrococcus furiosus} SCOP: a.4.5.82
Probab=53.88 E-value=2.7 Score=31.60 Aligned_cols=28 Identities=25% Similarity=0.560 Sum_probs=18.8
Q ss_pred CCcEEccCCCcchHHhHHHHHhhhhHhcccCCCCCCCCcccccc
Q 021263 242 FNPYALSCGHLFCKLCACSAASVMVFEGLKSASPDSKCPICREI 285 (315)
Q Consensus 242 ~~Pv~l~CgH~FC~~Ci~~~~~~~~~~~~~~~~~~~~CP~Cr~~ 285 (315)
..|....||+.|+. .......||.|+..
T Consensus 66 ~p~~C~~CG~~F~~----------------~~~kPsrCP~CkSe 93 (105)
T 2gmg_A 66 KPAQCRKCGFVFKA----------------EINIPSRCPKCKSE 93 (105)
T ss_dssp CCCBBTTTCCBCCC----------------CSSCCSSCSSSCCC
T ss_pred ECcChhhCcCeecc----------------cCCCCCCCcCCCCC
Confidence 34455789999821 11356889999876
No 91
>3vth_A Hydrogenase maturation factor; carbamoyltransfer, maturation of [NIFE]-hydrogenase, carbamoylphosphate, iron, HYPE; HET: APC AP2; 2.00A {Thermoanaerobacter tengcongensis} PDB: 3vti_A
Probab=51.19 E-value=5.2 Score=40.71 Aligned_cols=56 Identities=20% Similarity=0.401 Sum_probs=38.5
Q ss_pred cCceeccccccCCCc---------E-EccCCCcc--------------------hHHhHHHHHhhhhHhcccCCCCCCCC
Q 021263 230 YDLTCAVCLDLVFNP---------Y-ALSCGHLF--------------------CKLCACSAASVMVFEGLKSASPDSKC 279 (315)
Q Consensus 230 ~~l~C~IC~~~~~~P---------v-~l~CgH~F--------------------C~~Ci~~~~~~~~~~~~~~~~~~~~C 279 (315)
+.-+|+-|+.-+.|| + .+.||..| |..|..++-. -...+-+.+...|
T Consensus 110 D~a~C~~Cl~e~~dp~~Rry~ypF~nCt~CGPR~tii~~lPYDR~~TsM~~F~mC~~C~~EY~d---p~~RRfhAqp~aC 186 (761)
T 3vth_A 110 DMGVCEDCLRELKDPKDRRYRYPFINCTNCGPRFSIIEDIPYDRAKTSMKVFPMCEKCSREYHD---PHDRRFHAQPVAC 186 (761)
T ss_dssp CBCCCHHHHHHHTCTTSTTTTCTTCCBTTBBCSGGGBCSSSCCGGGBGGGGSCCCHHHHHHHTC---TTSTTTTCTTCCC
T ss_pred CccccHHHHHHhcCCCccccCCCcccCCCCCcchhhhccCCCCCCCCccccCCCCHHHHHHhcC---cccccccCCCCcC
Confidence 567899999888877 1 25788766 9999988743 1112233467899
Q ss_pred ccccccccC
Q 021263 280 PICREIIHI 288 (315)
Q Consensus 280 P~Cr~~v~~ 288 (315)
|.|.-.+..
T Consensus 187 ~~CGP~l~l 195 (761)
T 3vth_A 187 FDCGPSLSF 195 (761)
T ss_dssp TTTSCCEEE
T ss_pred CccCCeeEE
Confidence 999776543
No 92
>3t7l_A Zinc finger FYVE domain-containing protein 16; structural genomics consortium, SGC, lipid BIND protein, transport protein; 1.09A {Homo sapiens}
Probab=50.70 E-value=7.9 Score=28.06 Aligned_cols=31 Identities=23% Similarity=0.544 Sum_probs=22.1
Q ss_pred cCceeccccccCCCc---E-EccCCCcchHHhHHH
Q 021263 230 YDLTCAVCLDLVFNP---Y-ALSCGHLFCKLCACS 260 (315)
Q Consensus 230 ~~l~C~IC~~~~~~P---v-~l~CgH~FC~~Ci~~ 260 (315)
+...|.+|...|.-- . -..||+.||..|...
T Consensus 19 ~~~~C~~C~~~F~~~~RrhhCr~CG~v~C~~Cs~~ 53 (90)
T 3t7l_A 19 EAPNCMNCQVKFTFTKRRHHCRACGKVFCGVCCNR 53 (90)
T ss_dssp GCCBCTTTCCBCCSSSCCEECTTTCCEECGGGSCE
T ss_pred cCCcCcCCCCcccchhhCccccCCCCEECCcccCC
Confidence 446799999866521 1 147999999999744
No 93
>2l5u_A Chromodomain-helicase-DNA-binding protein 4; CHD4, MI2B, MI2-beta, PHD, protein binding, peptide binding metal binding protein; NMR {Homo sapiens}
Probab=50.12 E-value=13 Score=24.80 Aligned_cols=48 Identities=21% Similarity=0.478 Sum_probs=32.0
Q ss_pred ccCceeccccccCCCcEEc--cCCCcchHHhHHHHHhhhhHhcccCCCCCCCCcccccc
Q 021263 229 EYDLTCAVCLDLVFNPYAL--SCGHLFCKLCACSAASVMVFEGLKSASPDSKCPICREI 285 (315)
Q Consensus 229 ~~~l~C~IC~~~~~~Pv~l--~CgH~FC~~Ci~~~~~~~~~~~~~~~~~~~~CP~Cr~~ 285 (315)
..+..|.+|... .-+.+ .|...|...|+..... ....+...||.|...
T Consensus 9 ~~~~~C~vC~~~--g~ll~CD~C~~~fH~~Cl~p~l~-------~~p~g~W~C~~C~~~ 58 (61)
T 2l5u_A 9 DHQDYCEVCQQG--GEIILCDTCPRAYHMVCLDPDME-------KAPEGKWSCPHCEKE 58 (61)
T ss_dssp CCCSSCTTTSCC--SSEEECSSSSCEEEHHHHCTTCC-------SCCCSSCCCTTGGGG
T ss_pred CCCCCCccCCCC--CcEEECCCCChhhhhhccCCCCC-------CCCCCceECcccccc
Confidence 356789999873 23333 6888999999954311 122467899999653
No 94
>2lv9_A Histone-lysine N-methyltransferase MLL5; zinc finger, transcription, protein binding, NESG, northeast structural genomics consortium, SGC; NMR {Homo sapiens}
Probab=49.89 E-value=25 Score=25.78 Aligned_cols=46 Identities=13% Similarity=0.157 Sum_probs=28.1
Q ss_pred cCceeccccccCCCc-EEc--cCCCcchHHhHHHHHhhhhHhcccCCCCCCCCccccc
Q 021263 230 YDLTCAVCLDLVFNP-YAL--SCGHLFCKLCACSAASVMVFEGLKSASPDSKCPICRE 284 (315)
Q Consensus 230 ~~l~C~IC~~~~~~P-v~l--~CgH~FC~~Ci~~~~~~~~~~~~~~~~~~~~CP~Cr~ 284 (315)
+...| ||.....+- ++. .|...|...|+... .......+.||.|+.
T Consensus 27 d~vrC-iC~~~~~~~~mi~Cd~C~~w~H~~C~~~~--------~~~~p~~w~C~~C~~ 75 (98)
T 2lv9_A 27 DVTRC-ICGFTHDDGYMICCDKCSVWQHIDCMGID--------RQHIPDTYLCERCQP 75 (98)
T ss_dssp CBCCC-TTSCCSCSSCEEEBTTTCBEEETTTTTCC--------TTSCCSSBCCTTTSS
T ss_pred CCEEe-ECCCccCCCcEEEcCCCCCcCcCcCCCCC--------ccCCCCCEECCCCcC
Confidence 34667 887755433 332 58888888887432 111224689999963
No 95
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=49.88 E-value=10 Score=32.44 Aligned_cols=31 Identities=23% Similarity=0.490 Sum_probs=22.4
Q ss_pred cCceeccccccCCCcE----EccCCCcchHHhHHH
Q 021263 230 YDLTCAVCLDLVFNPY----ALSCGHLFCKLCACS 260 (315)
Q Consensus 230 ~~l~C~IC~~~~~~Pv----~l~CgH~FC~~Ci~~ 260 (315)
+...|.+|...|.--. ...||+.||..|-..
T Consensus 163 ~~~~C~~C~~~F~~~~RrhHCR~CG~v~C~~Cs~~ 197 (226)
T 3zyq_A 163 DAEECHRCRVQFGVMTRKHHCRACGQIFCGKCSSK 197 (226)
T ss_dssp CCSBCTTTCCBCBTTBCCEECTTTCCEECTTTCCE
T ss_pred cCCCCcCcCCCCCccccccccCCCcCEeChhhcCC
Confidence 3458999998665221 247999999999743
No 96
>2yw8_A RUN and FYVE domain-containing protein 1; structure genomics, structural genomics, NPPSFA; 3.00A {Homo sapiens} PDB: 2yqm_A
Probab=49.04 E-value=7 Score=27.78 Aligned_cols=31 Identities=26% Similarity=0.655 Sum_probs=22.3
Q ss_pred cCceeccccccCCCcEE----ccCCCcchHHhHHH
Q 021263 230 YDLTCAVCLDLVFNPYA----LSCGHLFCKLCACS 260 (315)
Q Consensus 230 ~~l~C~IC~~~~~~Pv~----l~CgH~FC~~Ci~~ 260 (315)
+...|.+|...|.--.. -.||..||..|...
T Consensus 18 ~~~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~~ 52 (82)
T 2yw8_A 18 EATHCRQCEKEFSISRRKHHCRNCGHIFCNTCSSN 52 (82)
T ss_dssp CCCBCTTTCCBCBTTBCCEECTTTCCEECSGGGCE
T ss_pred cCCcccCcCCcccCccccccCCCCCCEEChHHhCC
Confidence 34679999987753211 37999999999743
No 97
>2l43_A N-teminal domain from histone H3.3, linker, PHD1 from bromodomain-containing protein...; PHD finger, histone CODE, transcription; NMR {Homo sapiens}
Probab=49.03 E-value=13 Score=26.85 Aligned_cols=52 Identities=17% Similarity=0.295 Sum_probs=34.3
Q ss_pred ccCceeccccccC-CC--cEEc--cCCCcchHHhHHHHHhhhhHhcccCCCCCCCCccccccccCC
Q 021263 229 EYDLTCAVCLDLV-FN--PYAL--SCGHLFCKLCACSAASVMVFEGLKSASPDSKCPICREIIHIS 289 (315)
Q Consensus 229 ~~~l~C~IC~~~~-~~--Pv~l--~CgH~FC~~Ci~~~~~~~~~~~~~~~~~~~~CP~Cr~~v~~~ 289 (315)
.++..|.||...- .+ .+.+ .|.-.|...|+... ....+...||.|.......
T Consensus 23 ~~~~~C~vC~~~~s~~~~~ll~CD~C~~~fH~~Cl~p~---------~vP~g~W~C~~C~~~~~~~ 79 (88)
T 2l43_A 23 DEDAVCSICMDGESQNSNVILFCDMCNLAVHQECYGVP---------YIPEGQWLCRHCLQSRARP 79 (88)
T ss_dssp CCCCCCSSCCSSSSCSEEEEEECSSSCCCCCHHHHTCS---------SCCSSCCCCHHHHHHTTSC
T ss_pred CCCCcCCcCCCCCCCCCCCEEECCCCCchhhcccCCCC---------ccCCCceECccccCccchh
Confidence 4678899999753 12 2332 68889999998432 1224678999997665443
No 98
>1z2q_A LM5-1; membrane protein, FYVE domain, zinc-finger; NMR {Leishmania major}
Probab=48.51 E-value=12 Score=26.70 Aligned_cols=31 Identities=19% Similarity=0.437 Sum_probs=22.6
Q ss_pred cCceeccccccCCCcEE----ccCCCcchHHhHHH
Q 021263 230 YDLTCAVCLDLVFNPYA----LSCGHLFCKLCACS 260 (315)
Q Consensus 230 ~~l~C~IC~~~~~~Pv~----l~CgH~FC~~Ci~~ 260 (315)
+...|.+|...|.--.. -.||+.||..|...
T Consensus 20 ~~~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~~ 54 (84)
T 1z2q_A 20 DAPACNGCGCVFTTTVRRHHCRNCGYVLCGDCSRH 54 (84)
T ss_dssp TCCBCTTTCCBCCTTSCCEECTTTCCEECTGGGCC
T ss_pred CCCCCcCcCCccccchhcccccCCCcEEChHHhCC
Confidence 45689999987653211 47999999999743
No 99
>1z60_A TFIIH basal transcription factor complex P44 subunit; basic transcription factor, zinc binding protein, ring finger; NMR {Homo sapiens} SCOP: g.49.1.2
Probab=47.88 E-value=16 Score=24.35 Aligned_cols=40 Identities=23% Similarity=0.507 Sum_probs=28.3
Q ss_pred ceeccccccCCCcEE---ccCCCcchHHhHHHHHhhhhHhcccCCCCCCCCccc
Q 021263 232 LTCAVCLDLVFNPYA---LSCGHLFCKLCACSAASVMVFEGLKSASPDSKCPIC 282 (315)
Q Consensus 232 l~C~IC~~~~~~Pv~---l~CgH~FC~~Ci~~~~~~~~~~~~~~~~~~~~CP~C 282 (315)
..|-.|...+.+... ..|++.||.+|=.= .+.....||.|
T Consensus 16 ~~C~~C~~~~~~~~~y~C~~C~~~FC~dCD~f-----------iHe~Lh~CPgC 58 (59)
T 1z60_A 16 RFCYGCQGELKDQHVYVCAVCQNVFCVDCDVF-----------VHDSLHSCPGC 58 (59)
T ss_dssp CEETTTTEECTTSEEECCTTTTCCBCHHHHHT-----------TTTTSCSSSTT
T ss_pred CcccccCcccCCCccEECCccCcCcccchhHH-----------HHhhccCCcCC
Confidence 348888888765542 46999999999421 13466789988
No 100
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=47.19 E-value=6.1 Score=33.56 Aligned_cols=31 Identities=23% Similarity=0.535 Sum_probs=22.6
Q ss_pred cCceeccccccCCCcE----EccCCCcchHHhHHH
Q 021263 230 YDLTCAVCLDLVFNPY----ALSCGHLFCKLCACS 260 (315)
Q Consensus 230 ~~l~C~IC~~~~~~Pv----~l~CgH~FC~~Ci~~ 260 (315)
+...|++|...|.--. .-.||+.||..|...
T Consensus 160 ~~~~C~~C~~~F~~~~rrhhCr~CG~v~C~~Cs~~ 194 (220)
T 1dvp_A 160 DGRVCHRCRVEFTFTNRKHHCRNCGQVFCGQCTAK 194 (220)
T ss_dssp CCSBCTTTCCBCCSSSCCEECTTTCCEECSTTSCE
T ss_pred CCCccCCCCCccCCcccccccCCcCCEEChHHhCC
Confidence 4578999998765221 137999999999743
No 101
>1x4u_A Zinc finger, FYVE domain containing 27 isoform B; phosphoinositide binding, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=45.50 E-value=7.5 Score=27.73 Aligned_cols=30 Identities=23% Similarity=0.463 Sum_probs=21.7
Q ss_pred cCceeccccccCCCcEE----ccCCCcchHHhHH
Q 021263 230 YDLTCAVCLDLVFNPYA----LSCGHLFCKLCAC 259 (315)
Q Consensus 230 ~~l~C~IC~~~~~~Pv~----l~CgH~FC~~Ci~ 259 (315)
+...|.+|...|.--.. ..||..||..|..
T Consensus 13 ~~~~C~~C~~~F~~~~RrHHCR~CG~vfC~~Cs~ 46 (84)
T 1x4u_A 13 NFGNCTGCSATFSVLKKRRSCSNCGNSFCSRCCS 46 (84)
T ss_dssp CCSSCSSSCCCCCSSSCCEECSSSCCEECTTTSC
T ss_pred CCCcCcCcCCccccchhhhhhcCCCcEEChhhcC
Confidence 34679999987643211 3799999999964
No 102
>1y02_A CARP2, FYVE-ring finger protein sakura; zinc-binding module, phosphoinositide binding, caspase regulation, metal binding protein; 1.80A {Homo sapiens} SCOP: a.140.2.1 g.50.1.1
Probab=43.58 E-value=6.8 Score=30.22 Aligned_cols=45 Identities=22% Similarity=0.603 Sum_probs=28.2
Q ss_pred cCceeccccccCCCcE----EccCCCcchHHhHHHHHhhhhHhcccCCCCCCCCcccccc
Q 021263 230 YDLTCAVCLDLVFNPY----ALSCGHLFCKLCACSAASVMVFEGLKSASPDSKCPICREI 285 (315)
Q Consensus 230 ~~l~C~IC~~~~~~Pv----~l~CgH~FC~~Ci~~~~~~~~~~~~~~~~~~~~CP~Cr~~ 285 (315)
+...|..|...|.-.. -..||..||..|..... .....|-.|...
T Consensus 18 ~~~~C~~C~~~Fs~~~RkHHCR~CG~ifC~~Cs~~~~-----------~~vRVC~~C~~~ 66 (120)
T 1y02_A 18 LEPSCKSCGAHFANTARKQTCLDCKKNFCMTCSSQVG-----------NGPRLCLLCQRF 66 (120)
T ss_dssp --CCCTTTCCCCSSGGGCEECTTTCCEECGGGEEC---------------CCEEHHHHHH
T ss_pred ccCcccCcCCccccccccccCCCCCCeeCHHHhCCCC-----------CCceECHHHHHH
Confidence 4467999998775321 14799999999964321 135568888554
No 103
>2jne_A Hypothetical protein YFGJ; zinc fingers, two zinc, structural genomics, PSI-2, protein structure initiative; NMR {Escherichia coli} SCOP: g.41.18.1
Probab=43.10 E-value=1.9 Score=31.93 Aligned_cols=42 Identities=24% Similarity=0.634 Sum_probs=27.0
Q ss_pred CceeccccccCCCcEEccCCCcchHHhHHHHHhhhhHhcccCCCCCCCCccccccccC
Q 021263 231 DLTCAVCLDLVFNPYALSCGHLFCKLCACSAASVMVFEGLKSASPDSKCPICREIIHI 288 (315)
Q Consensus 231 ~l~C~IC~~~~~~Pv~l~CgH~FC~~Ci~~~~~~~~~~~~~~~~~~~~CP~Cr~~v~~ 288 (315)
+..||+|...+. ..=++.+|..|-..+ .....||.|.+++..
T Consensus 32 ~~~CP~Cq~eL~----~~g~~~hC~~C~~~f------------~~~a~CPdC~q~Lev 73 (101)
T 2jne_A 32 ELHCPQCQHVLD----QDNGHARCRSCGEFI------------EMKALCPDCHQPLQV 73 (101)
T ss_dssp CCBCSSSCSBEE----EETTEEEETTTCCEE------------EEEEECTTTCSBCEE
T ss_pred cccCccCCCcce----ecCCEEECccccchh------------hccccCcchhhHHHH
Confidence 388999987543 122344588885332 245789999888653
No 104
>1f62_A Transcription factor WSTF; Zn-finger; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=43.02 E-value=11 Score=23.91 Aligned_cols=46 Identities=24% Similarity=0.543 Sum_probs=27.5
Q ss_pred eeccccccCC-CcEEc--cCCCcchHHhHHHHHhhhhHhcccCCCCCCCCcccccc
Q 021263 233 TCAVCLDLVF-NPYAL--SCGHLFCKLCACSAASVMVFEGLKSASPDSKCPICREI 285 (315)
Q Consensus 233 ~C~IC~~~~~-~Pv~l--~CgH~FC~~Ci~~~~~~~~~~~~~~~~~~~~CP~Cr~~ 285 (315)
.|.||...-. +.+.. .|...|...|+...+. ....+...||.|+..
T Consensus 2 ~C~vC~~~~~~~~ll~Cd~C~~~~H~~Cl~p~l~-------~~P~g~W~C~~C~~~ 50 (51)
T 1f62_A 2 RCKVCRKKGEDDKLILCDECNKAFHLFCLRPALY-------EVPDGEWQCPACQPA 50 (51)
T ss_dssp CCTTTCCSSCCSCCEECTTTCCEECHHHHCTTCC-------SCCSSCCSCTTTSCC
T ss_pred CCCCCCCCCCCCCEEECCCCChhhCcccCCCCcC-------CCCCCcEECcCcccc
Confidence 3777775422 22222 6888899999854211 112357889999653
No 105
>2xqn_T Testin, TESS; metal-binding protein, cytoskeleton, focal adhesion, acrosom; 2.62A {Homo sapiens}
Probab=41.62 E-value=19 Score=27.25 Aligned_cols=46 Identities=20% Similarity=0.427 Sum_probs=34.3
Q ss_pred cCceeccccccCCC-cEEccCCCcchHHhHHHHHhhhhHhcccCCCCCCCCccccccccC
Q 021263 230 YDLTCAVCLDLVFN-PYALSCGHLFCKLCACSAASVMVFEGLKSASPDSKCPICREIIHI 288 (315)
Q Consensus 230 ~~l~C~IC~~~~~~-Pv~l~CgH~FC~~Ci~~~~~~~~~~~~~~~~~~~~CP~Cr~~v~~ 288 (315)
+-+.|..|...+.. +....=|..||..|-.+. ....|+.|..++..
T Consensus 29 ~CF~C~~C~~~L~~~~f~~~~g~~yC~~cy~~~-------------~~~~C~~C~~~I~~ 75 (126)
T 2xqn_T 29 KHFCCFDCDSILAGEIYVMVNDKPVCKPCYVKN-------------HAVVCQGCHNAIDP 75 (126)
T ss_dssp GGSBCTTTCCBCTTSEEEEETTEEEEHHHHHHH-------------SCCBCTTTCSBCCT
T ss_pred CCCCcCCCCCCCCcCEEEeECCEEechHHhCcC-------------cCccCcccCCcCCc
Confidence 45899999987765 344567888999998654 34678888888774
No 106
>1wfk_A Zinc finger, FYVE domain containing 19; riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Mus musculus} SCOP: g.50.1.1
Probab=41.00 E-value=8 Score=27.96 Aligned_cols=31 Identities=23% Similarity=0.429 Sum_probs=22.0
Q ss_pred cCceeccccccCCCcE----EccCCCcchHHhHHH
Q 021263 230 YDLTCAVCLDLVFNPY----ALSCGHLFCKLCACS 260 (315)
Q Consensus 230 ~~l~C~IC~~~~~~Pv----~l~CgH~FC~~Ci~~ 260 (315)
+...|.+|...|.--. -..||..||..|...
T Consensus 8 ~~~~C~~C~~~F~~~~RrHHCR~CG~vfC~~Cs~~ 42 (88)
T 1wfk_A 8 MESRCYGCAVKFTLFKKEYGCKNCGRAFCNGCLSF 42 (88)
T ss_dssp CCSBCTTTCCBCCSSSCEEECSSSCCEEETTTSCE
T ss_pred cCCCCcCcCCcccCccccccCCCCCCEEChhHcCC
Confidence 3457999998765321 147999999999743
No 107
>3mpx_A FYVE, rhogef and PH domain-containing protein 5; structural genomics consortium, DH domain, SGC, L binding protein; 2.80A {Homo sapiens}
Probab=40.80 E-value=5.8 Score=37.06 Aligned_cols=53 Identities=15% Similarity=0.313 Sum_probs=0.0
Q ss_pred cCceeccccccCCCcE----EccCCCcchHHhHHHHHhhhhHhcccCCCCCCCCccccccc
Q 021263 230 YDLTCAVCLDLVFNPY----ALSCGHLFCKLCACSAASVMVFEGLKSASPDSKCPICREII 286 (315)
Q Consensus 230 ~~l~C~IC~~~~~~Pv----~l~CgH~FC~~Ci~~~~~~~~~~~~~~~~~~~~CP~Cr~~v 286 (315)
+...|.+|...|.--. ...||+.||..|...... . +.........|-.|-..+
T Consensus 374 ~~~~c~~c~~~f~~~~r~h~Cr~Cg~~~C~~Cs~~~~~---~-~~~~~~~~rvC~~C~~~l 430 (434)
T 3mpx_A 374 HVMMCMNCGCDFSLTLRRHHCHACGKIVCRNCSRNKYP---L-KYLKDRMAKVCDGCFGEL 430 (434)
T ss_dssp -------------------------------------------------------------
T ss_pred cCCcCCCcCCCCCCcchhhhcccCcCEeehhhCCCeee---C-CCCCCCcCEecHHHHHHH
Confidence 4568999998765221 137999999999865422 1 111122346677775543
No 108
>1wd2_A Ariadne-1 protein homolog; ring, IBR, triad, zinc finger, ligase; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=39.99 E-value=2.9 Score=28.09 Aligned_cols=31 Identities=19% Similarity=0.438 Sum_probs=20.9
Q ss_pred CceeccccccCCCc-----EEc-c--CCCcchHHhHHHH
Q 021263 231 DLTCAVCLDLVFNP-----YAL-S--CGHLFCKLCACSA 261 (315)
Q Consensus 231 ~l~C~IC~~~~~~P-----v~l-~--CgH~FC~~Ci~~~ 261 (315)
.-.||-|...+... ++- . |++.||..|...|
T Consensus 6 ~k~CP~C~~~Iek~~GCnhmtC~~~~C~~~FCw~C~~~~ 44 (60)
T 1wd2_A 6 TKECPKCHVTIEKDGGCNHMVCRNQNCKAEFCWVCLGPW 44 (60)
T ss_dssp CCCCTTTCCCCSSCCSCCSSSCCSSGGGSCCSSSSCSCS
T ss_pred ceECcCCCCeeEeCCCCCcEEECCCCcCCEEeeCcCCCc
Confidence 35688887765532 332 3 8999999998665
No 109
>3vhs_A ATPase wrnip1; zinc finger, ubiquitin-binding domain, ubiquitin binding, ME binding protein; 1.90A {Homo sapiens}
Probab=39.51 E-value=8.5 Score=21.05 Aligned_cols=21 Identities=19% Similarity=0.740 Sum_probs=15.6
Q ss_pred CCCCccccccccCCCCcHHHH
Q 021263 276 DSKCPICREIIHISSIGAGWQ 296 (315)
Q Consensus 276 ~~~CP~Cr~~v~~~~~n~~l~ 296 (315)
...||+|.+..+...+|..+.
T Consensus 6 ~vqcpvcqq~mpaahin~hld 26 (29)
T 3vhs_A 6 QVQCPVCQQMMPAAHINSHLD 26 (29)
T ss_dssp EEECTTTCCEEEGGGHHHHHH
T ss_pred eeeChHHHHhCcHHHHHHHHh
Confidence 356999988877777776654
No 110
>2ku3_A Bromodomain-containing protein 1; PHD finger, chromatin regulator, metal-binding, finger, signaling protein; NMR {Homo sapiens}
Probab=37.56 E-value=26 Score=24.08 Aligned_cols=48 Identities=19% Similarity=0.354 Sum_probs=32.0
Q ss_pred ccCceeccccccC---CCcEEc--cCCCcchHHhHHHHHhhhhHhcccCCCCCCCCcccccc
Q 021263 229 EYDLTCAVCLDLV---FNPYAL--SCGHLFCKLCACSAASVMVFEGLKSASPDSKCPICREI 285 (315)
Q Consensus 229 ~~~l~C~IC~~~~---~~Pv~l--~CgH~FC~~Ci~~~~~~~~~~~~~~~~~~~~CP~Cr~~ 285 (315)
.....|.||...- .+.+.+ .|.-.|...|+... ....+...||.|+..
T Consensus 14 ~~~~~C~vC~~~~s~~~~~ll~CD~C~~~~H~~Cl~~~---------~vP~g~W~C~~C~~~ 66 (71)
T 2ku3_A 14 DEDAVCSICMDGESQNSNVILFCDMCNLAVHQECYGVP---------YIPEGQWLCRHCLQS 66 (71)
T ss_dssp CSSCSCSSSCCCCCCSSSCEEECSSSCCEEEHHHHTCS---------SCCSSCCCCHHHHHH
T ss_pred CCCCCCCCCCCCCCCCCCCEEECCCCCCccccccCCCC---------cCCCCCcCCccCcCc
Confidence 3578899998753 234443 68889999998431 112467889999653
No 111
>1m3v_A FLIN4, fusion of the LIM interacting domain of LDB1 and the N-terminal LIM domain of LMO4...; fusion protein, LMO proteins, metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=36.63 E-value=16 Score=27.73 Aligned_cols=51 Identities=10% Similarity=0.088 Sum_probs=36.5
Q ss_pred cCceeccccccCCC---cEEccCCCcchHHhHHHHHhhhhHhcccCCCCCCCCccccccccCCCC
Q 021263 230 YDLTCAVCLDLVFN---PYALSCGHLFCKLCACSAASVMVFEGLKSASPDSKCPICREIIHISSI 291 (315)
Q Consensus 230 ~~l~C~IC~~~~~~---Pv~l~CgH~FC~~Ci~~~~~~~~~~~~~~~~~~~~CP~Cr~~v~~~~~ 291 (315)
+-+.|..|...+.+ .....=|..||..|-.+.+. ....|..|..++....+
T Consensus 31 ~CF~C~~C~~~L~~~~~~~~~~~g~~yC~~cy~~~f~-----------~~~~C~~C~~~I~~~~~ 84 (122)
T 1m3v_A 31 RCLKCSSCQAQLGDIGTSSYTKSGMILCRNDYIRLFG-----------NSGAGGSGGHMGSGGDV 84 (122)
T ss_dssp HHHCCSSSCCCTTTSEECCEEETTEEECHHHHHHHHC-----------CCCSSSCSSCCSCCEES
T ss_pred hCCCcCCCCCcccccCCeEEEECCeeecHHHHHHHcC-----------CCCccccCCCCcCchhe
Confidence 34899999998863 33446778899999876542 23479999888775443
No 112
>2ct7_A Ring finger protein 31; IBR, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.4
Probab=36.50 E-value=15 Score=26.26 Aligned_cols=28 Identities=25% Similarity=0.450 Sum_probs=17.7
Q ss_pred eccccccCC-----CcEEc-cCCCcchHHhHHHH
Q 021263 234 CAVCLDLVF-----NPYAL-SCGHLFCKLCACSA 261 (315)
Q Consensus 234 C~IC~~~~~-----~Pv~l-~CgH~FC~~Ci~~~ 261 (315)
||-|...+. .+++= .|++.||..|-..|
T Consensus 28 CP~C~~~~~~~~~~~~v~C~~C~~~FC~~C~~~w 61 (86)
T 2ct7_A 28 CAQCSFGFIYEREQLEATCPQCHQTFCVRCKRQW 61 (86)
T ss_dssp CSSSCCCEECCCSCSCEECTTTCCEECSSSCSBC
T ss_pred CcCCCchheecCCCCceEeCCCCCccccccCCch
Confidence 666655332 22443 49999999997554
No 113
>3o36_A Transcription intermediary factor 1-alpha; TRIM24, PHD finger, bromodomain, H4K16 acetylation, breast C transcription-protein binding complex; HET: ALY; 1.70A {Homo sapiens} PDB: 3o33_A* 3o34_A* 3o35_A* 3o37_A
Probab=34.54 E-value=11 Score=30.92 Aligned_cols=47 Identities=23% Similarity=0.486 Sum_probs=28.9
Q ss_pred CceeccccccCCCcEE--ccCCCcchHHhHHHHHhhhhHhcccCCCCCCCCccccccc
Q 021263 231 DLTCAVCLDLVFNPYA--LSCGHLFCKLCACSAASVMVFEGLKSASPDSKCPICREII 286 (315)
Q Consensus 231 ~l~C~IC~~~~~~Pv~--l~CgH~FC~~Ci~~~~~~~~~~~~~~~~~~~~CP~Cr~~v 286 (315)
+..|.+|.+-= + +. -.|...|+..|+...+. ....+...||.|+...
T Consensus 4 ~~~C~~C~~~g-~-ll~Cd~C~~~~H~~C~~p~l~-------~~p~~~W~C~~C~~~~ 52 (184)
T 3o36_A 4 EDWCAVCQNGG-E-LLCCEKCPKVFHLSCHVPTLT-------NFPSGEWICTFCRDLS 52 (184)
T ss_dssp CSSCTTTCCCS-S-CEECSSSSCEECTTTSSSCCS-------SCCSSCCCCTTTSCSS
T ss_pred CCccccCCCCC-e-eeecCCCCcccCccccCCCCC-------CCCCCCEECccccCcc
Confidence 45688998542 1 22 25888888888743311 1124568899998653
No 114
>1x64_A Alpha-actinin-2 associated LIM protein; LIM domain, PDZ and LIM domain 3, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=32.60 E-value=46 Score=23.34 Aligned_cols=27 Identities=11% Similarity=0.127 Sum_probs=14.1
Q ss_pred CceeccccccCCCcEEccCCCcchHHh
Q 021263 231 DLTCAVCLDLVFNPYALSCGHLFCKLC 257 (315)
Q Consensus 231 ~l~C~IC~~~~~~Pv~l~CgH~FC~~C 257 (315)
.-.|..|.+.+...+...-+..|...|
T Consensus 25 ~~~C~~C~~~I~~~~~~a~~~~~H~~C 51 (89)
T 1x64_A 25 MPLCDKCGSGIVGAVVKARDKYRHPEC 51 (89)
T ss_dssp CCBCTTTCCBCCSCCEESSSCEECTTT
T ss_pred CCCcccCCCEecccEEEECCceECccC
Confidence 456777776655543334444444444
No 115
>1wen_A Inhibitor of growth family, member 4; ING1-like protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.50.1.2 PDB: 1wes_A
Probab=32.43 E-value=76 Score=21.64 Aligned_cols=48 Identities=17% Similarity=0.384 Sum_probs=30.2
Q ss_pred cCceeccccccCCCcEEc--c--CC-CcchHHhHHHHHhhhhHhcccCCCCCCCCcccccccc
Q 021263 230 YDLTCAVCLDLVFNPYAL--S--CG-HLFCKLCACSAASVMVFEGLKSASPDSKCPICREIIH 287 (315)
Q Consensus 230 ~~l~C~IC~~~~~~Pv~l--~--Cg-H~FC~~Ci~~~~~~~~~~~~~~~~~~~~CP~Cr~~v~ 287 (315)
+...| ||.......++. . |. ..|...|+.- . ....+...||.|+..-.
T Consensus 15 ~~~~C-~C~~~~~g~MI~CD~~~C~~~wfH~~Cvgl-------~--~~p~g~w~Cp~C~~~~~ 67 (71)
T 1wen_A 15 EPTYC-LCHQVSYGEMIGCDNPDCSIEWFHFACVGL-------T--TKPRGKWFCPRCSQESG 67 (71)
T ss_dssp SCCCS-TTCCCSCSSEECCSCSSCSCCCEETTTTTC-------S--SCCSSCCCCTTTSSCSS
T ss_pred CCCEE-ECCCCCCCCEeEeeCCCCCCccEecccCCc-------C--cCCCCCEECCCCCcccc
Confidence 45677 898865444443 4 65 5788999841 1 11236789999976543
No 116
>1fp0_A KAP-1 corepressor; PHD domain, C3HC4 type zinc binding domain, -structure, transcription; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=32.02 E-value=27 Score=25.21 Aligned_cols=48 Identities=19% Similarity=0.464 Sum_probs=31.4
Q ss_pred ccCceeccccccCCCcEEc--cCCCcchHHhHHHHHhhhhHhcccCCCCCCCCcccccc
Q 021263 229 EYDLTCAVCLDLVFNPYAL--SCGHLFCKLCACSAASVMVFEGLKSASPDSKCPICREI 285 (315)
Q Consensus 229 ~~~l~C~IC~~~~~~Pv~l--~CgH~FC~~Ci~~~~~~~~~~~~~~~~~~~~CP~Cr~~ 285 (315)
.....|.+|...- .+.. .|.-.|...|+.+.+. ....+...||.|...
T Consensus 23 ~n~~~C~vC~~~g--~LL~CD~C~~~fH~~Cl~PpL~-------~~P~g~W~C~~C~~~ 72 (88)
T 1fp0_A 23 DSATICRVCQKPG--DLVMCNQCEFCFHLDCHLPALQ-------DVPGEEWSCSLCHVL 72 (88)
T ss_dssp SSSSCCSSSCSSS--CCEECTTSSCEECTTSSSTTCC-------CCCSSSCCCCSCCCC
T ss_pred CCCCcCcCcCCCC--CEEECCCCCCceecccCCCCCC-------CCcCCCcCCccccCC
Confidence 3567899998642 2222 5888888999854321 112467899999755
No 117
>1weu_A Inhibitor of growth family, member 4; structural genomics, PHD domain, ING1-like protein, DNA binding protein, NPPSFA; NMR {Mus musculus} SCOP: g.50.1.2
Probab=31.50 E-value=76 Score=22.93 Aligned_cols=48 Identities=17% Similarity=0.400 Sum_probs=29.5
Q ss_pred ccCceeccccccCCCcEEc--c--CC-CcchHHhHHHHHhhhhHhcccCCCCCCCCccccccc
Q 021263 229 EYDLTCAVCLDLVFNPYAL--S--CG-HLFCKLCACSAASVMVFEGLKSASPDSKCPICREII 286 (315)
Q Consensus 229 ~~~l~C~IC~~~~~~Pv~l--~--Cg-H~FC~~Ci~~~~~~~~~~~~~~~~~~~~CP~Cr~~v 286 (315)
.+...| ||.......++. . |. .-|...|+.- . ........||.|+..-
T Consensus 34 ~e~~yC-iC~~~~~g~MI~CD~~dC~~~WfH~~CVgl-------~--~~p~g~W~Cp~C~~~~ 86 (91)
T 1weu_A 34 NEPTYC-LCHQVSYGEMIGCDNPDCSIEWFHFACVGL-------T--TKPRGKWFCPRCSQES 86 (91)
T ss_dssp CCCBCS-TTCCBCCSCCCCCSCSSCSCCCCCSTTTTC-------S--SCCCSSCCCTTTCCCC
T ss_pred CCCcEE-ECCCCCCCCEeEecCCCCCCCCEecccCCc-------C--cCCCCCEECcCccCcC
Confidence 345777 999865443332 3 55 5688888731 1 1123678999997654
No 118
>3lqh_A Histone-lysine N-methyltransferase MLL; PHD finger, bromodomain, leukemia, apoptosis, chromati regulator, DNA-binding, isopeptide bond; 1.72A {Homo sapiens} PDB: 3lqi_A* 3lqj_A* 2kyu_A
Probab=31.30 E-value=21 Score=29.49 Aligned_cols=55 Identities=16% Similarity=0.284 Sum_probs=30.8
Q ss_pred ceeccccccCCCc-----EE--ccCCCcchHHhHHHHHhh-hhHhcccCCCCCCCCcccccccc
Q 021263 232 LTCAVCLDLVFNP-----YA--LSCGHLFCKLCACSAASV-MVFEGLKSASPDSKCPICREIIH 287 (315)
Q Consensus 232 l~C~IC~~~~~~P-----v~--l~CgH~FC~~Ci~~~~~~-~~~~~~~~~~~~~~CP~Cr~~v~ 287 (315)
..||||...+.+. ++ -.|..-|...|+.-.-.. ...... +......||.|+..-.
T Consensus 3 ~~CpiC~k~Y~~~~~~~~MIqCd~C~~W~H~~Cvgi~~~~~e~~~~~-pe~~~y~Cp~C~~~~~ 65 (183)
T 3lqh_A 3 NFCPLCDKCYDDDDYESKMMQCGKCDRWVHSKCENLSDEMYEILSNL-PESVAYTCVNCTERHP 65 (183)
T ss_dssp CBCTTTCCBCTTCCTTCCEEECTTTCCEEEGGGSSCCHHHHHHHHHS-HHHHCCCCTTTCCSSS
T ss_pred CcCCCCcCccCCcccCCCeEECCCCCcccchhccccCHHHHHHhhcC-CCCCeeECcCCCCCCC
Confidence 4599999876644 33 258888888887321000 000000 0012689999987644
No 119
>2ro1_A Transcription intermediary factor 1-beta; KAP, TIF, PHD finger, bromodomain, SUMO, acetylation, alternative splicing, metal-binding, nucleus; NMR {Homo sapiens}
Probab=30.84 E-value=15 Score=30.44 Aligned_cols=47 Identities=19% Similarity=0.370 Sum_probs=25.8
Q ss_pred ceeccccccCCCcEEccCCCcchHHhHHHHHhhhhHhcccCCCCCCCCcccccc
Q 021263 232 LTCAVCLDLVFNPYALSCGHLFCKLCACSAASVMVFEGLKSASPDSKCPICREI 285 (315)
Q Consensus 232 l~C~IC~~~~~~Pv~l~CgH~FC~~Ci~~~~~~~~~~~~~~~~~~~~CP~Cr~~ 285 (315)
..|.+|..--.--..-.|...|+..|+..... ....+...||.|+..
T Consensus 3 ~~C~~C~~~g~ll~Cd~C~~~~H~~Cl~p~l~-------~~p~g~W~C~~C~~~ 49 (189)
T 2ro1_A 3 TICRVCQKPGDLVMCNQCEFCFHLDCHLPALQ-------DVPGEEWSCSLCHVL 49 (189)
T ss_dssp CCBTTTCCCSSCCCCTTTCCBCCSTTSTTCCS-------SCCCTTCCTTTTSCS
T ss_pred CcCccCCCCCceeECCCCCchhccccCCCCcc-------cCCCCCCCCcCccCC
Confidence 45777775321000125777788888743211 112466789998754
No 120
>3u5n_A E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, bromodomain, TGF-beta, epigenetics, methylation, K9ME3, K14AC, transcription; HET: M3L ALY; 1.95A {Homo sapiens} PDB: 3u5m_A* 3u5o_A* 3u5p_A*
Probab=30.18 E-value=9.5 Score=32.04 Aligned_cols=48 Identities=27% Similarity=0.443 Sum_probs=29.4
Q ss_pred cCceeccccccCCCcEEc--cCCCcchHHhHHHHHhhhhHhcccCCCCCCCCccccccc
Q 021263 230 YDLTCAVCLDLVFNPYAL--SCGHLFCKLCACSAASVMVFEGLKSASPDSKCPICREII 286 (315)
Q Consensus 230 ~~l~C~IC~~~~~~Pv~l--~CgH~FC~~Ci~~~~~~~~~~~~~~~~~~~~CP~Cr~~v 286 (315)
.+..|.+|..-= -+.. .|...|+..|+...+. ....+...||.|+...
T Consensus 6 ~~~~C~~C~~~g--~ll~Cd~C~~~~H~~Cl~p~l~-------~~p~~~W~C~~C~~~~ 55 (207)
T 3u5n_A 6 NEDWCAVCQNGG--DLLCCEKCPKVFHLTCHVPTLL-------SFPSGDWICTFCRDIG 55 (207)
T ss_dssp SCSSBTTTCCCE--EEEECSSSSCEECTTTSSSCCS-------SCCSSCCCCTTTSCSS
T ss_pred CCCCCCCCCCCC--ceEEcCCCCCccCCccCCCCCC-------CCCCCCEEeCceeCcc
Confidence 345699997531 1222 5888888889743311 1124568899998653
No 121
>1mm2_A MI2-beta; PHD, zinc finger, protein scaffold, DNA binding protein; NMR {Homo sapiens} SCOP: g.50.1.2 PDB: 2l75_A* 1mm3_A
Probab=29.60 E-value=14 Score=24.61 Aligned_cols=47 Identities=19% Similarity=0.335 Sum_probs=29.6
Q ss_pred cCceeccccccCCCcEEc--cCCCcchHHhHHHHHhhhhHhcccCCCCCCCCcccccc
Q 021263 230 YDLTCAVCLDLVFNPYAL--SCGHLFCKLCACSAASVMVFEGLKSASPDSKCPICREI 285 (315)
Q Consensus 230 ~~l~C~IC~~~~~~Pv~l--~CgH~FC~~Ci~~~~~~~~~~~~~~~~~~~~CP~Cr~~ 285 (315)
....|.||.+. .-+.+ .|...|...|+...+. ....+...||.|...
T Consensus 8 ~~~~C~vC~~~--g~ll~Cd~C~~~fH~~Cl~ppl~-------~~p~g~W~C~~C~~~ 56 (61)
T 1mm2_A 8 HMEFCRVCKDG--GELLCCDTCPSSYHIHCLNPPLP-------EIPNGEWLCPRCTCP 56 (61)
T ss_dssp SCSSCTTTCCC--SSCBCCSSSCCCBCSSSSSSCCS-------SCCSSCCCCTTTTTT
T ss_pred CCCcCCCCCCC--CCEEEcCCCCHHHcccccCCCcC-------cCCCCccCChhhcCc
Confidence 45679999862 22222 5888888899853211 112356889999765
No 122
>2o35_A Hypothetical protein DUF1244; helix bundle, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.12A {Sinorhizobium meliloti} SCOP: a.293.1.1
Probab=29.59 E-value=20 Score=26.52 Aligned_cols=12 Identities=25% Similarity=0.531 Sum_probs=10.5
Q ss_pred cchHHhHHHHHh
Q 021263 252 LFCKLCACSAAS 263 (315)
Q Consensus 252 ~FC~~Ci~~~~~ 263 (315)
.||+.|+.+|+.
T Consensus 42 GFCRNCLskWy~ 53 (105)
T 2o35_A 42 GFCRNCLSNWYR 53 (105)
T ss_dssp SCCHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 499999999975
No 123
>3fyb_A Protein of unknown function (DUF1244); hydrocar degrading, structural genomics, PSI-2; HET: PEG; 1.80A {Alcanivorax borkumensis SK2}
Probab=29.28 E-value=20 Score=26.43 Aligned_cols=12 Identities=25% Similarity=0.526 Sum_probs=10.5
Q ss_pred cchHHhHHHHHh
Q 021263 252 LFCKLCACSAAS 263 (315)
Q Consensus 252 ~FC~~Ci~~~~~ 263 (315)
.||+.|+.+|+.
T Consensus 41 GFCRNCLskWy~ 52 (104)
T 3fyb_A 41 DFCRNCLAKWLM 52 (104)
T ss_dssp SCCHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 499999999975
No 124
>2fiy_A Protein FDHE homolog; FDHE protein, structural genomics, P protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pseudomonas aeruginosa} SCOP: e.59.1.1
Probab=29.22 E-value=6.4 Score=35.49 Aligned_cols=9 Identities=33% Similarity=1.077 Sum_probs=4.2
Q ss_pred CCCcccccc
Q 021263 277 SKCPICREI 285 (315)
Q Consensus 277 ~~CP~Cr~~ 285 (315)
..|..|+..
T Consensus 254 e~C~~C~~Y 262 (309)
T 2fiy_A 254 ETCPSCQGY 262 (309)
T ss_dssp EEETTTTEE
T ss_pred EEcccccch
Confidence 345555444
No 125
>2yt5_A Metal-response element-binding transcription factor 2; zinc-regulated factor 1, ZIRF1, metal-response element DNA-binding protein M96; NMR {Mus musculus}
Probab=28.77 E-value=16 Score=24.42 Aligned_cols=54 Identities=19% Similarity=0.411 Sum_probs=32.8
Q ss_pred cCceeccccccCC---CcEEc--cCCCcchHHhHHHHHhhhhHhcccCCCCCCCCcccccccc
Q 021263 230 YDLTCAVCLDLVF---NPYAL--SCGHLFCKLCACSAASVMVFEGLKSASPDSKCPICREIIH 287 (315)
Q Consensus 230 ~~l~C~IC~~~~~---~Pv~l--~CgH~FC~~Ci~~~~~~~~~~~~~~~~~~~~CP~Cr~~v~ 287 (315)
++..|.||..... +.+.+ .|...|...|+...+....+ ...+...||.|.....
T Consensus 5 ~~~~C~vC~~~~~~~~~~ll~Cd~C~~~~H~~C~~p~l~~~~~----~p~~~W~C~~C~~~~~ 63 (66)
T 2yt5_A 5 SSGVCTICQEEYSEAPNEMVICDKCGQGYHQLCHTPHIDSSVI----DSDEKWLCRQCVFATT 63 (66)
T ss_dssp CCCCBSSSCCCCCBTTBCEEECSSSCCEEETTTSSSCCCHHHH----HSSCCCCCHHHHHTTS
T ss_pred CCCCCCCCCCCCCCCCCCEEECCCCChHHHhhhCCCccccccc----CCCCCEECCCCcCccc
Confidence 4678999987532 33443 68888989998542210000 0246788999976543
No 126
>2jtn_A LIM domain-binding protein 1, LIM/homeobox protein LHX3; intramolecular (fusion) protein-protein complex, protein binding/transcription complex; NMR {Mus musculus}
Probab=27.73 E-value=42 Score=27.16 Aligned_cols=46 Identities=20% Similarity=0.241 Sum_probs=28.4
Q ss_pred cCceeccccccCCCcEEccCCCcchHHhHHHHHhhhhHhcccCCCCCCCCccccccccC
Q 021263 230 YDLTCAVCLDLVFNPYALSCGHLFCKLCACSAASVMVFEGLKSASPDSKCPICREIIHI 288 (315)
Q Consensus 230 ~~l~C~IC~~~~~~Pv~l~CgH~FC~~Ci~~~~~~~~~~~~~~~~~~~~CP~Cr~~v~~ 288 (315)
.-+.|..|...+.......=|..||..|-.+. ....|..|..++..
T Consensus 86 ~CF~C~~C~~~L~~~~f~~~g~~yC~~~y~~~-------------f~~kC~~C~~~I~~ 131 (182)
T 2jtn_A 86 KCLKCSDCHVPLAERCFSRGESVYCKDDFFKR-------------FGTKCAACQLGIPP 131 (182)
T ss_dssp STTSCTTTCCCCSSCCEEETTEEECHHHHHHT-------------TSCCCTTTCCCCCS
T ss_pred ccCccCCCCCccCCCceeECCEeeecCccccc-------------cccccccCCCccCC
Confidence 44788888877664323345677888887543 33466666665543
No 127
>2jmo_A Parkin; IBR, E3 ligase, zinc binding domain, RBR; NMR {Homo sapiens}
Probab=27.41 E-value=6.6 Score=27.79 Aligned_cols=14 Identities=36% Similarity=1.013 Sum_probs=12.1
Q ss_pred cCCCcchHHhHHHH
Q 021263 248 SCGHLFCKLCACSA 261 (315)
Q Consensus 248 ~CgH~FC~~Ci~~~ 261 (315)
.||+.||..|...|
T Consensus 55 ~C~~~FC~~C~~~w 68 (80)
T 2jmo_A 55 GCGFAFCRECKEAY 68 (80)
T ss_dssp CCSCCEETTTTEEC
T ss_pred CCCCeeccccCccc
Confidence 59999999998665
No 128
>4ayb_P DNA-directed RNA polymerase; transferase, multi-subunit, transcription; 3.20A {Sulfolobus shibatae} PDB: 2pmz_P 2wb1_P 2y0s_P 3hkz_P 2waq_P 4b1o_P 4b1p_X
Probab=26.96 E-value=9.1 Score=24.28 Aligned_cols=13 Identities=38% Similarity=0.904 Sum_probs=9.9
Q ss_pred CCCCCcccccccc
Q 021263 275 PDSKCPICREIIH 287 (315)
Q Consensus 275 ~~~~CP~Cr~~v~ 287 (315)
...+||.|.-.+-
T Consensus 22 P~IrCpyCGyrii 34 (48)
T 4ayb_P 22 PGVRCPYCGYKII 34 (48)
T ss_dssp SSSCCTTTCCSCE
T ss_pred CCcccCccCcEEE
Confidence 5688999976643
No 129
>2rgt_A Fusion of LIM/homeobox protein LHX3, linker, INSU enhancer protein ISL-1; protein-protein complex, LIM domain, Zn finger, activator, D binding; 2.05A {Mus musculus} PDB: 3mmk_A
Probab=26.11 E-value=48 Score=26.44 Aligned_cols=32 Identities=16% Similarity=0.159 Sum_probs=21.7
Q ss_pred cCceeccccccCCCcEEccCCCcchHHhHHHH
Q 021263 230 YDLTCAVCLDLVFNPYALSCGHLFCKLCACSA 261 (315)
Q Consensus 230 ~~l~C~IC~~~~~~Pv~l~CgH~FC~~Ci~~~ 261 (315)
+-+.|..|...+.......=|..||..|-.+.
T Consensus 32 ~CF~C~~C~~~L~~~~f~~~g~~yC~~~y~~~ 63 (169)
T 2rgt_A 32 KCLKCSDCHVPLAERCFSRGESVYCKDDFFKR 63 (169)
T ss_dssp TTSBCTTTCCBCCSCCEESSSCEECHHHHHHH
T ss_pred ccCccCCCCCcCCCCCcccCCeeeeccccccc
Confidence 45888888887765433345677888887554
No 130
>1wfp_A Zinc finger (AN1-like) family protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=26.00 E-value=59 Score=22.63 Aligned_cols=27 Identities=26% Similarity=0.527 Sum_probs=19.5
Q ss_pred cCceeccccccCCC-cEEccCCCcchHH
Q 021263 230 YDLTCAVCLDLVFN-PYALSCGHLFCKL 256 (315)
Q Consensus 230 ~~l~C~IC~~~~~~-Pv~l~CgH~FC~~ 256 (315)
....|..|...+.- +..=.||.+||..
T Consensus 24 ~~~RC~~C~kkvgL~~f~CrCg~~FCs~ 51 (74)
T 1wfp_A 24 TATRCLSCNKKVGVTGFKCRCGSTFCGT 51 (74)
T ss_dssp CCCBCSSSCCBCTTTCEECTTSCEECTT
T ss_pred cCccchhhcCcccccceEeccCCEeccc
Confidence 45789999865443 4444799999985
No 131
>1zbd_B Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: g.50.1.1
Probab=25.90 E-value=19 Score=28.12 Aligned_cols=49 Identities=20% Similarity=0.404 Sum_probs=30.9
Q ss_pred cCceeccccccCC---Cc--EEccCCCcchHHhHHHHHhhhhHhcccCCCCCCCCcccccc
Q 021263 230 YDLTCAVCLDLVF---NP--YALSCGHLFCKLCACSAASVMVFEGLKSASPDSKCPICREI 285 (315)
Q Consensus 230 ~~l~C~IC~~~~~---~P--v~l~CgH~FC~~Ci~~~~~~~~~~~~~~~~~~~~CP~Cr~~ 285 (315)
..-.|.+|...|. ++ +-..|.|.+|..|-... ..........|-+|+..
T Consensus 54 ~~~~C~~C~~~~g~l~~~g~~C~~C~~~VC~~C~~~~-------~~~~~~~~W~C~vC~k~ 107 (134)
T 1zbd_B 54 GVNRCILCGEQLGMLGSASVVCEDCKKNVCTKCGVET-------SNNRPHPVWLCKICLEQ 107 (134)
T ss_dssp SSSBCSSSCCBCSTTSCCEEECTTTCCEEETTSEEEC-------CCSSSSCCEEEHHHHHH
T ss_pred CCccccccCCCcccccCCCCCCCCCCcccccccCCcc-------CCCCCccceechhhHHH
Confidence 3567999998762 22 22579999999995321 01122356788888654
No 132
>1x62_A C-terminal LIM domain protein 1; PDZ and LIM domain protein 1, LIM domain protein CLP-36, contractIle protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=25.85 E-value=41 Score=22.98 Aligned_cols=27 Identities=11% Similarity=0.105 Sum_probs=13.4
Q ss_pred CceeccccccCCCcEEccCCCcchHHh
Q 021263 231 DLTCAVCLDLVFNPYALSCGHLFCKLC 257 (315)
Q Consensus 231 ~l~C~IC~~~~~~Pv~l~CgH~FC~~C 257 (315)
...|+.|...+...+...-+..|...|
T Consensus 15 ~~~C~~C~~~I~~~~~~a~~~~~H~~C 41 (79)
T 1x62_A 15 LPMCDKCGTGIVGVFVKLRDRHRHPEC 41 (79)
T ss_dssp CCCCSSSCCCCCSSCEECSSCEECTTT
T ss_pred CCccccCCCCccCcEEEECcceeCcCc
Confidence 355666666555443333444443333
No 133
>1we9_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=25.71 E-value=16 Score=24.34 Aligned_cols=50 Identities=18% Similarity=0.329 Sum_probs=30.3
Q ss_pred cCceeccccccCC--CcEE--ccCCCcchHHhHHHHHhhhhHhcccCCCCCCCCcccccc
Q 021263 230 YDLTCAVCLDLVF--NPYA--LSCGHLFCKLCACSAASVMVFEGLKSASPDSKCPICREI 285 (315)
Q Consensus 230 ~~l~C~IC~~~~~--~Pv~--l~CgH~FC~~Ci~~~~~~~~~~~~~~~~~~~~CP~Cr~~ 285 (315)
+...|++|..... ..++ -.|..-|...|+.-.. .. ........||.|+..
T Consensus 5 e~~~C~~C~~~~~~~~~mI~Cd~C~~WfH~~Cvgl~~-----~~-~~~~~~~~C~~C~~k 58 (64)
T 1we9_A 5 SSGQCGACGESYAADEFWICCDLCEMWFHGKCVKITP-----AR-AEHIKQYKCPSCSNK 58 (64)
T ss_dssp SCCCCSSSCCCCCSSSCEEECSSSCCEEETTTTTCCT-----TG-GGGCSSCCCHHHHTT
T ss_pred CCCCCCCCCCccCCCCCEEEccCCCCCCCccccCcCh-----hH-hcCCCcEECCCCcCc
Confidence 5678999988763 2222 2588888888873210 00 001256889999754
No 134
>2cup_A Skeletal muscle LIM-protein 1; four and half LIM domains protein 1, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 g.39.1.3
Probab=25.66 E-value=35 Score=24.44 Aligned_cols=47 Identities=23% Similarity=0.525 Sum_probs=34.2
Q ss_pred cCceeccccccCCCc-EEccCCCcchHHhHHHHHhhhhHhcccCCCCCCCCccccccccCC
Q 021263 230 YDLTCAVCLDLVFNP-YALSCGHLFCKLCACSAASVMVFEGLKSASPDSKCPICREIIHIS 289 (315)
Q Consensus 230 ~~l~C~IC~~~~~~P-v~l~CgH~FC~~Ci~~~~~~~~~~~~~~~~~~~~CP~Cr~~v~~~ 289 (315)
+-+.|..|...+... ....=|..||..|..+ .....|..|..++...
T Consensus 32 ~CF~C~~C~~~L~~~~~~~~~g~~yC~~cy~~-------------~~~~~C~~C~~~I~~~ 79 (101)
T 2cup_A 32 TCFRCAKCLHPLANETFVAKDNKILCNKCTTR-------------EDSPKCKGCFKAIVAG 79 (101)
T ss_dssp TTCCCSSSCCCTTSSCCEEETTEEECHHHHTT-------------CCCCBCSSSCCBCCSS
T ss_pred cCCcccccCCCCCcCeeECcCCEEEChhHhhh-------------hcCCccccCCCccccC
Confidence 458899999887654 3345678899999743 2457899999888743
No 135
>2pv0_B DNA (cytosine-5)-methyltransferase 3-like; DNMT3L, unmethylated H3K4, de novo DNA methylation, transferase regulator; HET: DNA; 3.30A {Homo sapiens} PDB: 2pvc_B*
Probab=25.53 E-value=30 Score=32.12 Aligned_cols=55 Identities=18% Similarity=0.312 Sum_probs=33.8
Q ss_pred cCceeccccccCCCcEEc--cCCCcchHHhHHHHHhhhhHhcccCCCCCCCCcccccc
Q 021263 230 YDLTCAVCLDLVFNPYAL--SCGHLFCKLCACSAASVMVFEGLKSASPDSKCPICREI 285 (315)
Q Consensus 230 ~~l~C~IC~~~~~~Pv~l--~CgH~FC~~Ci~~~~~~~~~~~~~~~~~~~~CP~Cr~~ 285 (315)
.+..|.+|.+--.==..- .|...||..||.+.+........ .......|=+|...
T Consensus 92 ~~~yCr~C~~Gg~l~~Cdn~~C~r~FC~~Ci~~n~g~~~~~~i-~~~d~W~Cf~C~p~ 148 (386)
T 2pv0_B 92 YQSYCSICCSGETLLICGNPDCTRCYCFECVDSLVGPGTSGKV-HAMSNWVCYLCLPS 148 (386)
T ss_dssp SBCSCTTTCCCSSCEECCSTTCCCEECHHHHHHHTCTTHHHHH-HHCSSCCCTTTSSC
T ss_pred CcccceEcCCCCeEEEeCCCCCCcchHHHHHHHhcChhHHHHh-hccCCceEEEcCCc
Confidence 356788888633210112 68999999999887632222221 12467889999654
No 136
>2xjy_A Rhombotin-2; oncoprotein, T-cell leukemia, proto-oncogene, transcription, developmental protein; 2.40A {Homo sapiens} PDB: 2xjz_A
Probab=25.34 E-value=45 Score=25.17 Aligned_cols=48 Identities=19% Similarity=0.294 Sum_probs=31.1
Q ss_pred cCceeccccccCC---CcEEccCCCcchHHhHHHHHhhhhHhcccCCCCCCCCccccccccC
Q 021263 230 YDLTCAVCLDLVF---NPYALSCGHLFCKLCACSAASVMVFEGLKSASPDSKCPICREIIHI 288 (315)
Q Consensus 230 ~~l~C~IC~~~~~---~Pv~l~CgH~FC~~Ci~~~~~~~~~~~~~~~~~~~~CP~Cr~~v~~ 288 (315)
+-+.|..|...+. .+....=|..||..|-.+.+. ....|+.|..++..
T Consensus 28 ~CF~C~~C~~~L~~~~~~~~~~~g~~yC~~~y~~~~~-----------~~~~C~~C~~~I~~ 78 (131)
T 2xjy_A 28 DCLSCDLCGCRLGEVGRRLYYKLGRKLCRRDYLRLFG-----------QDGLCASCDKRIRA 78 (131)
T ss_dssp TTCBCTTTCCBCSSTTCCEEEETTEEECHHHHHHHHC-----------CCEECTTTCCEECT
T ss_pred HHcccCcCCCccccCCCeEEEECCEEeecCchhhhCC-----------CccChhhcCCccCc
Confidence 4588999988774 244455677888888766532 12267777666543
No 137
>1wev_A Riken cDNA 1110020M19; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: g.50.1.2
Probab=25.33 E-value=17 Score=26.13 Aligned_cols=56 Identities=20% Similarity=0.421 Sum_probs=34.4
Q ss_pred ccCceeccccccCC---CcEEc--cCCCcchHHhHHHHHhhhhHhcccCCCCCCCCcccccccc
Q 021263 229 EYDLTCAVCLDLVF---NPYAL--SCGHLFCKLCACSAASVMVFEGLKSASPDSKCPICREIIH 287 (315)
Q Consensus 229 ~~~l~C~IC~~~~~---~Pv~l--~CgH~FC~~Ci~~~~~~~~~~~~~~~~~~~~CP~Cr~~v~ 287 (315)
+....|.||...-. +.+.+ .|...|...|+...+....+ ....+...||.|+....
T Consensus 14 e~~~~C~vC~~~~~~~~~~ll~CD~C~~~yH~~Cl~Ppl~~~~~---~~p~g~W~C~~C~~~~~ 74 (88)
T 1wev_A 14 EMGLACVVCRQMTVASGNQLVECQECHNLYHQDCHKPQVTDKEV---NDPRLVWYCARCTRQMK 74 (88)
T ss_dssp HHCCSCSSSCCCCCCTTCCEEECSSSCCEEETTTSSSCCCHHHH---HCTTCCCCCHHHHHHHC
T ss_pred CCCCcCCCCCCCCCCCCCceEECCCCCCeEcCccCCCccccccc---CCCCCCeeCccccchhh
Confidence 35678999987533 44554 68888888888543210000 01246788999976543
No 138
>2puy_A PHD finger protein 21A; PHD finger, histone CODE, BRAF-HDAC complex, transcription; 1.43A {Homo sapiens}
Probab=24.76 E-value=9.1 Score=25.32 Aligned_cols=47 Identities=17% Similarity=0.421 Sum_probs=29.0
Q ss_pred cCceeccccccCCCcEEc--cCCCcchHHhHHHHHhhhhHhcccCCCCCCCCcccccc
Q 021263 230 YDLTCAVCLDLVFNPYAL--SCGHLFCKLCACSAASVMVFEGLKSASPDSKCPICREI 285 (315)
Q Consensus 230 ~~l~C~IC~~~~~~Pv~l--~CgH~FC~~Ci~~~~~~~~~~~~~~~~~~~~CP~Cr~~ 285 (315)
.+..|.+|... ..+.. .|...|...|+...+. ....+...||.|...
T Consensus 4 ~~~~C~vC~~~--g~ll~Cd~C~~~fH~~Cl~ppl~-------~~p~g~W~C~~C~~~ 52 (60)
T 2puy_A 4 HEDFCSVCRKS--GQLLMCDTCSRVYHLDCLDPPLK-------TIPKGMWICPRCQDQ 52 (60)
T ss_dssp CCSSCTTTCCC--SSCEECSSSSCEECGGGSSSCCS-------SCCCSCCCCHHHHHH
T ss_pred CCCCCcCCCCC--CcEEEcCCCCcCEECCcCCCCcC-------CCCCCceEChhccCh
Confidence 35678888873 22232 6888888889853211 112356789998654
No 139
>2jmi_A Protein YNG1, ING1 homolog 1; PHD, histone, recognition, yeast, protein binding; NMR {Saccharomyces cerevisiae} PDB: 2jmj_A*
Probab=23.98 E-value=38 Score=24.54 Aligned_cols=46 Identities=20% Similarity=0.487 Sum_probs=28.1
Q ss_pred cCceeccccccCCCcEEc--cCC---CcchHHhHHHHHhhhhHhcccCCCCCCCCcc-cccc
Q 021263 230 YDLTCAVCLDLVFNPYAL--SCG---HLFCKLCACSAASVMVFEGLKSASPDSKCPI-CREI 285 (315)
Q Consensus 230 ~~l~C~IC~~~~~~Pv~l--~Cg---H~FC~~Ci~~~~~~~~~~~~~~~~~~~~CP~-Cr~~ 285 (315)
+...| ||.......++. .|. ..|...|+.- .. ...+...||. |+..
T Consensus 25 ~~~yC-iC~~~~~g~MI~CD~c~C~~eWfH~~CVgl-------~~--~p~~~W~Cp~cC~~~ 76 (90)
T 2jmi_A 25 EEVYC-FCRNVSYGPMVACDNPACPFEWFHYGCVGL-------KQ--APKGKWYCSKDCKEI 76 (90)
T ss_dssp CSCCS-TTTCCCSSSEECCCSSSCSCSCEETTTSSC-------SS--CTTSCCCSSHHHHHH
T ss_pred CCcEE-EeCCCCCCCEEEecCCCCccccCcCccCCC-------Cc--CCCCCccCChhhcch
Confidence 45677 898765554443 344 5788888731 11 1135788999 8643
No 140
>2jvx_A NF-kappa-B essential modulator; CCHC classical zinc finger, NEMO zinc finger, beta-BETA- alpha fold, coiled coil, cytoplasm, disease mutation; NMR {Synthetic} PDB: 2jvy_A
Probab=23.96 E-value=18 Score=20.31 Aligned_cols=16 Identities=19% Similarity=0.328 Sum_probs=12.5
Q ss_pred CceeccccccCCCcEE
Q 021263 231 DLTCAVCLDLVFNPYA 246 (315)
Q Consensus 231 ~l~C~IC~~~~~~Pv~ 246 (315)
.+.||||...+-|+-+
T Consensus 3 k~~CpvCk~q~Pd~kt 18 (28)
T 2jvx_A 3 DFCCPKCQYQAPDMDT 18 (28)
T ss_dssp CEECTTSSCEESSHHH
T ss_pred cccCccccccCcChHH
Confidence 5789999987777643
No 141
>3pwf_A Rubrerythrin; non heme iron peroxidases, oxidative stress, oxidoreductase; 1.64A {Pyrococcus furiosus} PDB: 3mps_A 3pza_A 3qvd_A 1nnq_A 2hr5_A
Probab=22.42 E-value=27 Score=28.39 Aligned_cols=13 Identities=15% Similarity=0.322 Sum_probs=8.5
Q ss_pred cCceeccccccCC
Q 021263 230 YDLTCAVCLDLVF 242 (315)
Q Consensus 230 ~~l~C~IC~~~~~ 242 (315)
....|++|..+..
T Consensus 137 ~~~~C~~CG~i~~ 149 (170)
T 3pwf_A 137 KVYICPICGYTAV 149 (170)
T ss_dssp CEEECTTTCCEEE
T ss_pred CeeEeCCCCCeeC
Confidence 3567888876553
No 142
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=22.05 E-value=22 Score=26.45 Aligned_cols=14 Identities=29% Similarity=0.795 Sum_probs=11.1
Q ss_pred CCCCccccccccCC
Q 021263 276 DSKCPICREIIHIS 289 (315)
Q Consensus 276 ~~~CP~Cr~~v~~~ 289 (315)
+..||+|..+++..
T Consensus 47 g~~CPvCgs~l~~~ 60 (112)
T 1l8d_A 47 KGKCPVCGRELTDE 60 (112)
T ss_dssp SEECTTTCCEECHH
T ss_pred CCCCCCCCCcCCHH
Confidence 55799999988754
No 143
>2zet_C Melanophilin; complex, GTP-binding protein, GTPase, G-protein, RAB, RAB27B, effector, SLP homology domain, acetylation, lipoprotein, membrane; HET: GTP; 3.00A {Mus musculus}
Probab=21.95 E-value=31 Score=27.58 Aligned_cols=45 Identities=29% Similarity=0.590 Sum_probs=30.9
Q ss_pred CceeccccccCC---CcEE--ccCCCcchHHhHHHHHhhhhHhcccCCCCCCCCcccccc
Q 021263 231 DLTCAVCLDLVF---NPYA--LSCGHLFCKLCACSAASVMVFEGLKSASPDSKCPICREI 285 (315)
Q Consensus 231 ~l~C~IC~~~~~---~Pv~--l~CgH~FC~~Ci~~~~~~~~~~~~~~~~~~~~CP~Cr~~ 285 (315)
.-.|.+|...|. ++-. ..|.|.+|..|-. + ........|-+|+..
T Consensus 68 ~~~C~~C~~~fg~l~~~g~~C~~C~~~VC~~C~~-~---------~~~~~~W~C~vC~k~ 117 (153)
T 2zet_C 68 ETHCARCLQPYRLLLNSRRQCLECSLFVCKSCSH-A---------HPEEQGWLCDPCHLA 117 (153)
T ss_dssp GTBCTTTCCBGGGCSSCCEECTTTCCEECGGGEE-C---------CSSSSSCEEHHHHHH
T ss_pred CccchhhcCccccccCCCCcCCCCCchhhccccc-c---------cCCCCcEeeHHHHHH
Confidence 567999998642 3322 4799999999952 1 123467889999765
No 144
>2dar_A PDZ and LIM domain protein 5; enigma homolog protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=21.58 E-value=72 Score=22.31 Aligned_cols=12 Identities=33% Similarity=0.844 Sum_probs=5.3
Q ss_pred eeccccccCCCc
Q 021263 233 TCAVCLDLVFNP 244 (315)
Q Consensus 233 ~C~IC~~~~~~P 244 (315)
.|+.|...+.+.
T Consensus 27 ~C~~C~~~I~~~ 38 (90)
T 2dar_A 27 MCAHCNQVIRGP 38 (90)
T ss_dssp BBSSSCCBCCSC
T ss_pred CCccCCCEecce
Confidence 444454444333
No 145
>1erd_A Pheromone ER-2; NMR {Euplotes raikovi} SCOP: a.10.1.1
Probab=21.45 E-value=21 Score=20.79 Aligned_cols=15 Identities=33% Similarity=0.820 Sum_probs=11.7
Q ss_pred ccCCCcchHHhHHHH
Q 021263 247 LSCGHLFCKLCACSA 261 (315)
Q Consensus 247 l~CgH~FC~~Ci~~~ 261 (315)
.+|.|+.|..|--..
T Consensus 10 ascehtmcgycqgpl 24 (40)
T 1erd_A 10 ASCEHTMCGYCQGPL 24 (40)
T ss_dssp HHTCGGGGGGSCHHH
T ss_pred HhccccccccccCCe
Confidence 479999999986443
No 146
>2jrp_A Putative cytoplasmic protein; two-zinc binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium LT2}
Probab=21.44 E-value=7.3 Score=27.83 Aligned_cols=10 Identities=40% Similarity=1.036 Sum_probs=5.6
Q ss_pred ceeccccccC
Q 021263 232 LTCAVCLDLV 241 (315)
Q Consensus 232 l~C~IC~~~~ 241 (315)
..||.|...+
T Consensus 3 ~~CP~C~~~l 12 (81)
T 2jrp_A 3 ITCPVCHHAL 12 (81)
T ss_dssp CCCSSSCSCC
T ss_pred CCCCCCCCcc
Confidence 4566666543
No 147
>1xwh_A Autoimmune regulator; PHD domain, Zn binding domain, apeced, nucleosome, E3 ligase, transcription; NMR {Homo sapiens} PDB: 2ke1_A 2kft_A
Probab=21.03 E-value=15 Score=24.83 Aligned_cols=47 Identities=23% Similarity=0.425 Sum_probs=28.5
Q ss_pred cCceeccccccCCCcEEc--cCCCcchHHhHHHHHhhhhHhcccCCCCCCCCcccccc
Q 021263 230 YDLTCAVCLDLVFNPYAL--SCGHLFCKLCACSAASVMVFEGLKSASPDSKCPICREI 285 (315)
Q Consensus 230 ~~l~C~IC~~~~~~Pv~l--~CgH~FC~~Ci~~~~~~~~~~~~~~~~~~~~CP~Cr~~ 285 (315)
.+..|.||.+.- .+.+ .|...|...|+...+. ....+...||.|...
T Consensus 7 ~~~~C~vC~~~g--~ll~CD~C~~~fH~~Cl~ppl~-------~~P~g~W~C~~C~~~ 55 (66)
T 1xwh_A 7 NEDECAVCRDGG--ELICCDGCPRAFHLACLSPPLR-------EIPSGTWRCSSCLQA 55 (66)
T ss_dssp CCCSBSSSSCCS--SCEECSSCCCEECTTTSSSCCS-------SCCSSCCCCHHHHHT
T ss_pred CCCCCccCCCCC--CEEEcCCCChhhcccccCCCcC-------cCCCCCeECccccCc
Confidence 467788888632 2222 5887888888743211 112356789999654
No 148
>3o70_A PHD finger protein 13; PHF13, structural genomics consortium, SGC, structural genom type zinc finger, protein binding, zinc ION binding; 1.85A {Homo sapiens}
Probab=20.98 E-value=35 Score=23.18 Aligned_cols=46 Identities=22% Similarity=0.393 Sum_probs=28.2
Q ss_pred cCceeccccccCCC-cEE--ccCCCcchHHhHHHHHhhhhHhcccCCCCCCCCccccc
Q 021263 230 YDLTCAVCLDLVFN-PYA--LSCGHLFCKLCACSAASVMVFEGLKSASPDSKCPICRE 284 (315)
Q Consensus 230 ~~l~C~IC~~~~~~-Pv~--l~CgH~FC~~Ci~~~~~~~~~~~~~~~~~~~~CP~Cr~ 284 (315)
+.+.| ||...... +++ -.|..-|...|+.-. .. .......||.|+.
T Consensus 18 ~~~~C-iC~~~~~~~~MIqCd~C~~WfH~~Cvgi~-------~~-~~~~~~~C~~C~~ 66 (68)
T 3o70_A 18 GLVTC-FCMKPFAGRPMIECNECHTWIHLSCAKIR-------KS-NVPEVFVCQKCRD 66 (68)
T ss_dssp TCCCS-TTCCCCTTCCEEECTTTCCEEETTTTTCC-------TT-SCCSSCCCHHHHT
T ss_pred CceEe-ECCCcCCCCCEEECCCCCccccccccCcC-------cc-cCCCcEECCCCCC
Confidence 55777 88876554 233 257778888887321 10 1235788999964
No 149
>2yql_A PHD finger protein 21A; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=20.54 E-value=14 Score=24.08 Aligned_cols=46 Identities=17% Similarity=0.444 Sum_probs=28.6
Q ss_pred cCceeccccccCCCcEEc--cCCCcchHHhHHHHHhhhhHhcccCCCCCCCCccccc
Q 021263 230 YDLTCAVCLDLVFNPYAL--SCGHLFCKLCACSAASVMVFEGLKSASPDSKCPICRE 284 (315)
Q Consensus 230 ~~l~C~IC~~~~~~Pv~l--~CgH~FC~~Ci~~~~~~~~~~~~~~~~~~~~CP~Cr~ 284 (315)
.+..|.+|... ..+.. .|...|...|+...+. ....+...||.|..
T Consensus 8 ~~~~C~vC~~~--g~ll~Cd~C~~~~H~~Cl~ppl~-------~~p~g~W~C~~C~~ 55 (56)
T 2yql_A 8 HEDFCSVCRKS--GQLLMCDTCSRVYHLDCLDPPLK-------TIPKGMWICPRCQD 55 (56)
T ss_dssp SCCSCSSSCCS--SCCEECSSSSCEECSSSSSSCCC-------SCCCSSCCCHHHHC
T ss_pred CCCCCccCCCC--CeEEEcCCCCcceECccCCCCcC-------CCCCCceEChhhhC
Confidence 45779999874 23332 6888888888853211 11235678998853
No 150
>1rut_X Flinc4, fusion protein of LMO4 protein and LIM domain- binding protein 1; B-tandem zipper, protein binding; 1.30A {Mus musculus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 2dfy_X 2xjz_I 2xjy_B
Probab=20.10 E-value=30 Score=28.23 Aligned_cols=48 Identities=17% Similarity=0.330 Sum_probs=30.9
Q ss_pred cCceeccccccCCC---cEEccCCCcchHHhHHHHHhhhhHhcccCCCCCCCCccccccccC
Q 021263 230 YDLTCAVCLDLVFN---PYALSCGHLFCKLCACSAASVMVFEGLKSASPDSKCPICREIIHI 288 (315)
Q Consensus 230 ~~l~C~IC~~~~~~---Pv~l~CgH~FC~~Ci~~~~~~~~~~~~~~~~~~~~CP~Cr~~v~~ 288 (315)
+-+.|..|...+.+ +....=|..||..|-.+.+. ....|+.|..++..
T Consensus 31 ~CF~C~~C~~~L~~~g~~~~~~~g~~yC~~cy~~~~~-----------~~~~C~~C~~~I~~ 81 (188)
T 1rut_X 31 RCLKCSSCQAQLGDIGTSSYTKSGMILCRNDYIRLFG-----------NSGACSACGQSIPA 81 (188)
T ss_dssp GGCBCTTTCCBHHHHCSEEEEETTEEECHHHHHHHHS-----------CCEECTTTCCEECT
T ss_pred cCcccCCCCcccccCCceEEEeCCccccccccccccc-----------cCCccccCCCcccc
Confidence 45888899887764 44455678889888765532 11257777666543
Done!