Query 021264
Match_columns 315
No_of_seqs 143 out of 1544
Neff 8.7
Searched_HMMs 46136
Date Fri Mar 29 08:53:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021264.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/021264hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0656 ARA1 Aldo/keto reducta 100.0 1E-64 2.2E-69 445.4 26.9 262 4-287 2-264 (280)
2 KOG1577 Aldo/keto reductase fa 100.0 7.5E-62 1.6E-66 427.2 27.4 282 1-287 1-285 (300)
3 COG0667 Tas Predicted oxidored 100.0 1.1E-57 2.3E-62 415.5 27.0 262 5-287 1-309 (316)
4 PRK11172 dkgB 2,5-diketo-D-glu 100.0 2.8E-57 6E-62 405.7 26.9 250 15-287 2-252 (267)
5 PRK11565 dkgA 2,5-diketo-D-glu 100.0 6.7E-56 1.4E-60 398.1 27.7 262 1-287 1-262 (275)
6 KOG1575 Voltage-gated shaker-l 100.0 4.1E-56 8.8E-61 398.0 25.7 273 4-295 11-333 (336)
7 PRK09912 L-glyceraldehyde 3-ph 100.0 3.7E-55 8.1E-60 405.5 27.8 267 3-287 11-333 (346)
8 TIGR01293 Kv_beta voltage-depe 100.0 3.1E-55 6.8E-60 401.8 26.5 260 7-285 1-316 (317)
9 PRK10625 tas putative aldo-ket 100.0 7.5E-55 1.6E-59 403.9 27.3 276 5-287 1-339 (346)
10 cd06660 Aldo_ket_red Aldo-keto 100.0 1.9E-53 4.1E-58 384.7 26.7 260 7-285 1-285 (285)
11 PRK10376 putative oxidoreducta 100.0 7E-53 1.5E-57 381.5 26.1 261 1-287 1-288 (290)
12 PLN02587 L-galactose dehydroge 100.0 1.1E-52 2.3E-57 384.7 25.9 265 7-287 1-300 (314)
13 PF00248 Aldo_ket_red: Aldo/ke 100.0 4.7E-52 1E-56 375.2 20.4 250 18-286 1-282 (283)
14 COG1453 Predicted oxidoreducta 100.0 4.4E-51 9.5E-56 362.8 18.9 275 5-302 1-307 (391)
15 COG4989 Predicted oxidoreducta 100.0 1.7E-50 3.7E-55 341.2 17.3 264 5-286 1-292 (298)
16 PRK14863 bifunctional regulato 100.0 9.4E-50 2E-54 360.7 18.5 248 13-283 2-278 (292)
17 KOG1576 Predicted oxidoreducta 100.0 6.9E-45 1.5E-49 309.4 20.2 267 4-287 21-321 (342)
18 KOG3023 Glutamate-cysteine lig 98.4 6.6E-07 1.4E-11 76.3 7.1 138 72-209 73-229 (285)
19 PLN02489 homocysteine S-methyl 92.1 9.9 0.00021 35.2 16.4 171 73-271 130-332 (335)
20 PRK08609 hypothetical protein; 87.8 32 0.00068 34.4 16.4 183 29-240 349-552 (570)
21 PF07021 MetW: Methionine bios 87.2 5.8 0.00012 33.6 8.9 106 92-213 60-172 (193)
22 PRK08392 hypothetical protein; 85.2 23 0.0005 30.3 17.1 182 30-240 15-208 (215)
23 COG1748 LYS9 Saccharopine dehy 79.8 12 0.00027 35.3 8.8 81 27-119 77-159 (389)
24 PRK10558 alpha-dehydro-beta-de 78.3 24 0.00052 31.3 9.9 101 143-272 10-115 (256)
25 COG2040 MHT1 Homocysteine/sele 77.3 55 0.0012 29.5 13.2 218 27-271 41-297 (300)
26 cd01973 Nitrogenase_VFe_beta_l 77.1 68 0.0015 31.0 13.4 112 51-175 67-190 (454)
27 cd03319 L-Ala-DL-Glu_epimerase 75.6 64 0.0014 29.3 13.3 149 27-209 134-288 (316)
28 KOG0369 Pyruvate carboxylase [ 74.6 49 0.0011 33.5 11.4 146 29-213 43-197 (1176)
29 cd07944 DRE_TIM_HOA_like 4-hyd 74.4 34 0.00073 30.5 9.8 109 87-206 17-128 (266)
30 PRK13796 GTPase YqeH; Provisio 72.6 53 0.0011 30.8 11.1 122 26-169 54-180 (365)
31 PRK10128 2-keto-3-deoxy-L-rham 72.4 61 0.0013 29.0 10.9 101 143-272 9-114 (267)
32 PRK04452 acetyl-CoA decarbonyl 71.4 34 0.00073 31.5 9.1 97 98-209 83-184 (319)
33 TIGR00381 cdhD CO dehydrogenas 71.1 94 0.002 29.3 12.3 94 107-211 153-251 (389)
34 TIGR03239 GarL 2-dehydro-3-deo 70.7 55 0.0012 28.9 10.2 97 147-272 7-108 (249)
35 PF03102 NeuB: NeuB family; I 70.0 37 0.00081 29.9 8.8 120 25-170 52-190 (241)
36 cd03174 DRE_TIM_metallolyase D 69.8 31 0.00067 30.2 8.6 99 92-207 20-135 (265)
37 COG2089 SpsE Sialic acid synth 69.7 64 0.0014 29.7 10.3 120 26-170 87-224 (347)
38 TIGR00216 ispH_lytB (E)-4-hydr 69.1 39 0.00085 30.4 8.9 116 141-267 145-273 (280)
39 cd03316 MR_like Mandelate race 69.0 97 0.0021 28.6 15.3 149 27-208 139-299 (357)
40 KOG1579 Homocysteine S-methylt 68.5 96 0.0021 28.4 13.4 220 28-271 52-313 (317)
41 PRK05692 hydroxymethylglutaryl 67.8 32 0.0007 31.0 8.3 98 92-205 27-138 (287)
42 COG1140 NarY Nitrate reductase 66.6 4.1 8.9E-05 37.8 2.1 53 148-201 262-316 (513)
43 PRK01045 ispH 4-hydroxy-3-meth 66.3 55 0.0012 29.8 9.3 116 141-267 145-275 (298)
44 PRK07535 methyltetrahydrofolat 65.9 58 0.0013 29.0 9.4 101 89-208 24-124 (261)
45 COG0761 lytB 4-Hydroxy-3-methy 65.3 43 0.00094 30.2 8.2 121 136-267 142-277 (294)
46 PRK12360 4-hydroxy-3-methylbut 65.1 57 0.0012 29.4 9.1 114 143-267 150-274 (281)
47 PRK00164 moaA molybdenum cofac 64.6 1.1E+02 0.0025 27.8 14.2 161 26-205 49-228 (331)
48 cd00308 enolase_like Enolase-s 63.0 53 0.0012 28.3 8.5 94 95-210 109-206 (229)
49 COG1751 Uncharacterized conser 62.6 72 0.0016 26.0 8.2 78 135-212 11-95 (186)
50 PLN02746 hydroxymethylglutaryl 61.7 49 0.0011 30.8 8.3 99 91-205 68-180 (347)
51 cd03322 rpsA The starvation se 59.9 31 0.00068 32.2 6.9 69 139-209 202-274 (361)
52 KOG0259 Tyrosine aminotransfer 59.2 1.6E+02 0.0035 27.8 11.1 74 22-112 75-155 (447)
53 TIGR00190 thiC thiamine biosyn 58.7 1.7E+02 0.0036 27.8 12.2 144 27-209 75-225 (423)
54 cd03315 MLE_like Muconate lact 58.5 1.3E+02 0.0028 26.5 13.8 150 27-209 85-240 (265)
55 PRK15072 bifunctional D-altron 57.0 37 0.00079 32.3 6.9 68 140-209 246-317 (404)
56 COG2069 CdhD CO dehydrogenase/ 55.6 1.5E+02 0.0032 27.1 9.7 102 97-211 157-262 (403)
57 TIGR02026 BchE magnesium-proto 54.8 1.2E+02 0.0025 29.8 10.2 76 134-209 222-306 (497)
58 cd01965 Nitrogenase_MoFe_beta_ 54.1 2E+02 0.0044 27.4 14.5 114 51-177 62-186 (428)
59 TIGR01228 hutU urocanate hydra 54.1 40 0.00086 32.8 6.4 130 31-183 105-258 (545)
60 TIGR02932 vnfK_nitrog V-contai 53.3 2.2E+02 0.0048 27.6 13.4 113 51-176 70-195 (457)
61 TIGR03700 mena_SCO4494 putativ 53.2 1.7E+02 0.0037 27.1 10.6 127 88-257 80-212 (351)
62 PF05321 HHA: Haemolysin expre 53.1 6.5 0.00014 26.1 0.7 50 256-305 5-57 (57)
63 PRK14461 ribosomal RNA large s 52.3 84 0.0018 29.6 8.2 98 111-211 232-352 (371)
64 PRK07094 biotin synthase; Prov 52.1 1.4E+02 0.0031 27.1 9.8 121 134-269 70-203 (323)
65 PRK07534 methionine synthase I 52.0 2E+02 0.0043 26.7 21.6 209 29-271 45-294 (336)
66 cd00405 PRAI Phosphoribosylant 51.9 89 0.0019 26.3 7.9 50 95-165 64-113 (203)
67 cd00740 MeTr MeTr subgroup of 51.2 1.4E+02 0.003 26.4 9.2 104 87-209 23-128 (252)
68 PRK08195 4-hyroxy-2-oxovalerat 50.1 2.1E+02 0.0046 26.4 11.6 26 24-49 20-45 (337)
69 PRK12581 oxaloacetate decarbox 49.5 2.6E+02 0.0056 27.3 14.6 123 21-165 97-219 (468)
70 PF02401 LYTB: LytB protein; 49.1 45 0.00097 30.1 5.7 114 143-267 146-274 (281)
71 PRK13352 thiamine biosynthesis 48.9 2.5E+02 0.0054 26.9 12.3 148 26-209 74-228 (431)
72 TIGR02311 HpaI 2,4-dihydroxyhe 48.7 1.9E+02 0.0041 25.5 10.2 101 143-272 3-108 (249)
73 PRK13958 N-(5'-phosphoribosyl) 48.7 53 0.0011 28.1 5.9 68 99-184 16-84 (207)
74 PF06506 PrpR_N: Propionate ca 48.7 31 0.00067 28.5 4.4 70 134-206 61-131 (176)
75 TIGR00735 hisF imidazoleglycer 48.6 1.9E+02 0.0041 25.4 13.4 91 95-203 159-253 (254)
76 PRK14017 galactonate dehydrata 48.6 58 0.0013 30.6 6.8 68 140-209 217-288 (382)
77 PRK05414 urocanate hydratase; 48.4 64 0.0014 31.5 6.8 129 32-183 115-267 (556)
78 TIGR01862 N2-ase-Ialpha nitrog 48.4 2.6E+02 0.0056 26.9 13.6 144 51-209 98-271 (443)
79 cd07943 DRE_TIM_HOA 4-hydroxy- 47.8 1.3E+02 0.0029 26.5 8.6 103 92-206 23-131 (263)
80 PRK14457 ribosomal RNA large s 47.7 2.4E+02 0.0051 26.3 13.4 148 55-210 164-329 (345)
81 PF00682 HMGL-like: HMGL-like 47.5 1.8E+02 0.004 24.9 9.9 164 25-209 10-192 (237)
82 PRK09485 mmuM homocysteine met 47.3 2.2E+02 0.0048 25.8 20.3 213 27-270 44-302 (304)
83 PF01487 DHquinase_I: Type I 3 47.3 1.8E+02 0.0039 24.8 9.4 75 24-107 70-146 (224)
84 cd03327 MR_like_2 Mandelate ra 47.1 78 0.0017 29.2 7.3 66 140-207 211-280 (341)
85 COG0635 HemN Coproporphyrinoge 46.2 84 0.0018 30.1 7.4 74 85-162 199-276 (416)
86 PRK09490 metH B12-dependent me 46.0 4.6E+02 0.0099 29.1 16.9 90 102-209 395-489 (1229)
87 PRK12331 oxaloacetate decarbox 46.0 1.7E+02 0.0037 28.3 9.5 101 93-205 28-141 (448)
88 PRK00087 4-hydroxy-3-methylbut 45.6 1.2E+02 0.0026 30.9 8.8 115 142-267 146-271 (647)
89 cd01974 Nitrogenase_MoFe_beta 45.4 2.8E+02 0.0061 26.5 13.1 114 50-176 65-190 (435)
90 cd03325 D-galactonate_dehydrat 45.3 85 0.0019 29.1 7.3 66 140-207 216-285 (352)
91 PRK08645 bifunctional homocyst 45.3 3.4E+02 0.0074 27.4 19.1 211 27-271 41-286 (612)
92 cd07948 DRE_TIM_HCS Saccharomy 45.1 2.2E+02 0.0048 25.2 11.2 122 9-158 7-133 (262)
93 CHL00076 chlB photochlorophyll 45.1 3.2E+02 0.0069 27.0 13.3 62 52-119 67-128 (513)
94 COG0159 TrpA Tryptophan syntha 44.8 2.3E+02 0.005 25.3 10.7 140 134-284 76-242 (265)
95 PRK14459 ribosomal RNA large s 44.6 1.4E+02 0.0031 28.1 8.5 99 110-211 241-359 (373)
96 cd03318 MLE Muconate Lactonizi 44.6 85 0.0018 29.2 7.2 66 140-207 228-297 (365)
97 PRK10550 tRNA-dihydrouridine s 44.6 2.5E+02 0.0054 25.7 13.1 138 24-182 70-224 (312)
98 PRK10945 gene expression modul 44.6 17 0.00038 25.3 1.8 50 256-305 17-69 (72)
99 COG3623 SgaU Putative L-xylulo 44.6 35 0.00076 29.8 4.1 70 11-82 65-155 (287)
100 PF03102 NeuB: NeuB family; I 44.2 55 0.0012 28.8 5.4 98 190-303 59-184 (241)
101 PF05913 DUF871: Bacterial pro 44.1 1.1E+02 0.0024 28.6 7.7 197 27-268 12-234 (357)
102 COG1149 MinD superfamily P-loo 44.0 33 0.00072 30.7 4.0 90 99-211 155-250 (284)
103 PF07725 LRR_3: Leucine Rich R 44.0 9.3 0.0002 19.7 0.3 12 303-314 8-19 (20)
104 PRK06740 histidinol-phosphatas 43.6 2.7E+02 0.0058 25.7 11.4 126 93-236 155-285 (331)
105 TIGR02534 mucon_cyclo muconate 43.5 62 0.0013 30.2 6.0 68 140-209 227-298 (368)
106 TIGR01290 nifB nitrogenase cof 43.3 2.5E+02 0.0055 27.1 10.2 106 87-211 60-198 (442)
107 TIGR01502 B_methylAsp_ase meth 42.8 1.7E+02 0.0038 27.9 8.9 73 137-211 278-359 (408)
108 cd03323 D-glucarate_dehydratas 42.4 1E+02 0.0022 29.3 7.3 68 140-209 250-321 (395)
109 PRK09413 IS2 repressor TnpA; R 42.3 32 0.00069 26.6 3.3 40 26-65 13-53 (121)
110 PF02679 ComA: (2R)-phospho-3- 42.3 1.6E+02 0.0035 26.0 8.0 78 28-115 83-168 (244)
111 COG0621 MiaB 2-methylthioadeni 42.2 3.3E+02 0.0071 26.3 11.5 83 130-212 169-265 (437)
112 TIGR01182 eda Entner-Doudoroff 42.2 1.8E+02 0.004 24.8 8.2 83 94-205 23-106 (204)
113 TIGR01496 DHPS dihydropteroate 42.0 2.4E+02 0.0053 24.9 9.3 63 139-208 63-126 (257)
114 PRK10415 tRNA-dihydrouridine s 41.7 2.8E+02 0.0061 25.4 12.0 135 26-183 74-225 (321)
115 cd00739 DHPS DHPS subgroup of 41.2 2.6E+02 0.0055 24.8 9.7 65 139-208 64-128 (257)
116 cd07948 DRE_TIM_HCS Saccharomy 41.1 1.5E+02 0.0033 26.3 7.9 95 92-207 23-132 (262)
117 PF00682 HMGL-like: HMGL-like 41.0 2.3E+02 0.005 24.3 9.8 142 91-272 14-177 (237)
118 COG0042 tRNA-dihydrouridine sy 40.8 2.9E+02 0.0063 25.4 12.2 136 26-182 76-228 (323)
119 PRK07945 hypothetical protein; 40.6 3E+02 0.0065 25.4 18.0 106 28-156 110-226 (335)
120 TIGR01928 menC_lowGC/arch o-su 40.5 1E+02 0.0023 28.2 7.0 70 138-209 210-283 (324)
121 COG0820 Predicted Fe-S-cluster 40.4 1.3E+02 0.0029 28.0 7.4 96 111-210 216-329 (349)
122 TIGR02660 nifV_homocitr homoci 40.2 2.3E+02 0.0049 26.5 9.3 94 92-206 24-132 (365)
123 COG0773 MurC UDP-N-acetylmuram 40.2 8.3 0.00018 37.1 -0.4 95 142-256 44-141 (459)
124 TIGR02026 BchE magnesium-proto 39.9 2.6E+02 0.0057 27.3 10.0 162 27-201 223-392 (497)
125 PRK14466 ribosomal RNA large s 39.8 1.9E+02 0.0042 26.9 8.5 99 110-211 210-325 (345)
126 cd01968 Nitrogenase_NifE_I Nit 39.5 3.4E+02 0.0073 25.7 13.5 109 51-175 67-186 (410)
127 PF11242 DUF2774: Protein of u 39.4 44 0.00096 22.6 3.1 23 226-248 15-37 (63)
128 cd07937 DRE_TIM_PC_TC_5S Pyruv 38.9 2.4E+02 0.0052 25.1 8.9 114 93-233 23-157 (275)
129 PRK14464 ribosomal RNA large s 38.7 2.1E+02 0.0045 26.7 8.5 78 134-211 223-317 (344)
130 PF01081 Aldolase: KDPG and KH 38.6 1.6E+02 0.0034 25.0 7.2 31 135-166 18-48 (196)
131 PRK01222 N-(5'-phosphoribosyl) 38.5 87 0.0019 26.8 5.7 85 99-204 18-104 (210)
132 PRK14465 ribosomal RNA large s 38.5 2.4E+02 0.0053 26.2 9.0 98 111-211 216-329 (342)
133 cd03770 SR_TndX_transposase Se 38.4 58 0.0013 25.7 4.4 53 93-158 54-106 (140)
134 COG1099 Predicted metal-depend 38.4 1.8E+02 0.004 25.4 7.4 69 191-267 118-198 (254)
135 PRK14456 ribosomal RNA large s 38.3 1.8E+02 0.0039 27.4 8.2 98 111-210 238-352 (368)
136 PRK09061 D-glutamate deacylase 38.1 3.6E+02 0.0078 26.5 10.6 112 31-161 171-286 (509)
137 cd01971 Nitrogenase_VnfN_like 37.9 3.4E+02 0.0073 25.9 10.2 109 51-176 67-189 (427)
138 TIGR01278 DPOR_BchB light-inde 37.8 1.5E+02 0.0031 29.3 7.9 107 52-175 67-190 (511)
139 cd07943 DRE_TIM_HOA 4-hydroxy- 37.7 2.9E+02 0.0062 24.4 12.2 124 10-170 8-148 (263)
140 COG1751 Uncharacterized conser 37.7 88 0.0019 25.5 5.1 68 31-106 16-85 (186)
141 PRK13602 putative ribosomal pr 37.6 91 0.002 22.3 4.8 58 143-207 3-60 (82)
142 PRK05588 histidinol-phosphatas 37.5 2.8E+02 0.0061 24.2 12.5 115 29-156 16-143 (255)
143 cd01948 EAL EAL domain. This d 37.4 2.5E+02 0.0054 23.6 9.3 117 74-208 82-210 (240)
144 cd04740 DHOD_1B_like Dihydroor 37.3 3E+02 0.0066 24.6 13.9 159 26-201 99-286 (296)
145 PF01175 Urocanase: Urocanase; 37.2 88 0.0019 30.6 5.9 130 31-183 104-257 (546)
146 PRK14462 ribosomal RNA large s 36.9 2.4E+02 0.0051 26.4 8.7 97 112-211 225-338 (356)
147 PRK05283 deoxyribose-phosphate 36.6 1.5E+02 0.0033 26.3 7.0 85 18-109 135-227 (257)
148 COG0646 MetH Methionine syntha 36.1 3.4E+02 0.0074 24.8 15.5 218 26-270 50-309 (311)
149 PF02276 CytoC_RC: Photosynthe 36.0 34 0.00074 31.0 2.8 48 252-300 42-91 (314)
150 TIGR00126 deoC deoxyribose-pho 35.6 1.3E+02 0.0029 25.8 6.4 79 21-107 124-205 (211)
151 TIGR02931 anfK_nitrog Fe-only 35.6 4.2E+02 0.0091 25.7 13.6 113 51-176 73-198 (461)
152 PF10171 DUF2366: Uncharacteri 35.5 81 0.0017 26.2 4.8 52 93-161 66-117 (173)
153 COG2949 SanA Uncharacterized m 35.3 1.6E+02 0.0035 25.3 6.5 74 136-209 78-182 (235)
154 PLN02540 methylenetetrahydrofo 35.1 4.8E+02 0.01 26.2 14.1 161 29-205 15-202 (565)
155 PRK06015 keto-hydroxyglutarate 35.0 1.2E+02 0.0025 26.0 5.8 61 138-205 41-102 (201)
156 COG0821 gcpE 1-hydroxy-2-methy 34.7 3.8E+02 0.0082 24.9 9.3 71 135-205 58-128 (361)
157 KOG1549 Cysteine desulfurase N 34.5 4.3E+02 0.0093 25.4 10.8 70 139-208 144-219 (428)
158 TIGR00737 nifR3_yhdG putative 34.4 3.6E+02 0.0078 24.5 13.1 136 25-183 71-223 (319)
159 TIGR01163 rpe ribulose-phospha 34.4 2.1E+02 0.0046 23.8 7.6 63 139-204 44-108 (210)
160 PF00809 Pterin_bind: Pterin b 34.3 1.6E+02 0.0036 25.0 6.8 67 137-209 57-125 (210)
161 PRK01018 50S ribosomal protein 34.3 1.4E+02 0.0031 22.1 5.6 61 139-206 4-64 (99)
162 TIGR03597 GTPase_YqeH ribosome 33.7 2.8E+02 0.0061 25.8 8.8 121 26-168 48-173 (360)
163 PRK10551 phage resistance prot 33.6 3.9E+02 0.0086 26.3 10.2 114 74-206 348-473 (518)
164 PF06080 DUF938: Protein of un 33.6 79 0.0017 27.1 4.5 43 176-218 107-152 (204)
165 COG4626 Phage terminase-like p 33.4 1.5E+02 0.0032 29.4 6.9 50 134-183 410-459 (546)
166 cd07939 DRE_TIM_NifV Streptomy 33.4 3.3E+02 0.0072 23.9 9.5 97 91-208 20-131 (259)
167 TIGR00742 yjbN tRNA dihydrouri 33.1 3.9E+02 0.0084 24.5 11.9 143 25-183 63-224 (318)
168 cd02801 DUS_like_FMN Dihydrour 32.9 3.1E+02 0.0066 23.3 9.7 133 27-182 65-213 (231)
169 COG4669 EscJ Type III secretor 32.9 1.6E+02 0.0036 25.8 6.4 79 25-104 27-122 (246)
170 PRK13361 molybdenum cofactor b 32.9 3.9E+02 0.0084 24.4 12.9 107 26-151 45-154 (329)
171 TIGR01579 MiaB-like-C MiaB-lik 32.9 2.8E+02 0.0061 26.3 8.8 68 132-200 165-245 (414)
172 COG1880 CdhB CO dehydrogenase/ 32.7 2.5E+02 0.0053 23.1 6.9 112 18-148 39-169 (170)
173 PF01118 Semialdhyde_dh: Semia 32.7 57 0.0012 24.9 3.4 28 26-53 74-101 (121)
174 cd01981 Pchlide_reductase_B Pc 32.6 4.4E+02 0.0096 25.1 12.8 61 53-119 68-128 (430)
175 cd00885 cinA Competence-damage 32.2 2.1E+02 0.0045 23.6 6.8 62 33-100 23-84 (170)
176 PRK14463 ribosomal RNA large s 32.2 2.3E+02 0.005 26.4 7.8 101 108-211 207-325 (349)
177 PRK11359 cyclic-di-GMP phospho 32.2 4.9E+02 0.011 26.7 11.1 112 78-207 632-755 (799)
178 TIGR00048 radical SAM enzyme, 31.5 2.6E+02 0.0057 26.0 8.1 98 111-211 219-333 (355)
179 COG1358 RPL8A Ribosomal protei 31.4 1.5E+02 0.0032 22.9 5.4 65 136-206 12-76 (116)
180 PRK15440 L-rhamnonate dehydrat 31.3 1.6E+02 0.0035 27.9 6.8 66 139-206 247-318 (394)
181 cd00338 Ser_Recombinase Serine 31.2 93 0.002 23.9 4.5 53 92-158 50-102 (137)
182 cd01967 Nitrogenase_MoFe_alpha 31.2 4.5E+02 0.0097 24.7 11.3 109 51-174 68-187 (406)
183 PF09370 TIM-br_sig_trns: TIM- 31.1 1.1E+02 0.0024 27.3 5.2 58 136-206 94-156 (268)
184 TIGR03677 rpl7ae 50S ribosomal 31.1 2.4E+02 0.0051 21.7 6.5 64 137-206 12-75 (117)
185 PRK13803 bifunctional phosphor 31.0 3E+02 0.0066 27.8 9.0 89 99-204 18-108 (610)
186 COG4152 ABC-type uncharacteriz 30.9 1.4E+02 0.003 26.7 5.6 36 134-171 164-199 (300)
187 PF00155 Aminotran_1_2: Aminot 30.8 4.1E+02 0.0089 24.1 10.0 51 159-209 129-190 (363)
188 TIGR02090 LEU1_arch isopropylm 30.8 4.5E+02 0.0097 24.5 10.6 125 9-160 7-135 (363)
189 KOG2367 Alpha-isopropylmalate 30.7 3.3E+02 0.0072 26.6 8.5 88 26-118 201-290 (560)
190 cd07938 DRE_TIM_HMGL 3-hydroxy 30.6 2.3E+02 0.005 25.3 7.4 99 91-205 20-132 (274)
191 COG2089 SpsE Sialic acid synth 30.5 4E+02 0.0086 24.7 8.7 178 74-304 13-219 (347)
192 PF01207 Dus: Dihydrouridine s 30.5 2.1E+02 0.0046 26.0 7.2 126 26-171 63-204 (309)
193 PRK09613 thiH thiamine biosynt 30.5 1.6E+02 0.0034 28.8 6.6 108 88-211 116-243 (469)
194 PRK06361 hypothetical protein; 30.2 3.3E+02 0.0072 22.9 14.4 181 29-244 10-199 (212)
195 PRK02901 O-succinylbenzoate sy 30.1 4E+02 0.0086 24.6 9.0 68 140-209 173-241 (327)
196 PF08303 tRNA_lig_kinase: tRNA 30.1 3.1E+02 0.0068 22.7 7.3 63 93-168 40-107 (168)
197 cd03321 mandelate_racemase Man 30.1 1.2E+02 0.0026 28.1 5.7 64 140-205 226-293 (355)
198 PF07287 DUF1446: Protein of u 29.8 1.6E+02 0.0034 27.7 6.3 90 137-237 9-100 (362)
199 PRK14041 oxaloacetate decarbox 29.6 5.4E+02 0.012 25.1 11.3 141 93-270 27-191 (467)
200 PRK14460 ribosomal RNA large s 29.4 3.3E+02 0.0072 25.4 8.4 142 55-210 171-331 (354)
201 TIGR02090 LEU1_arch isopropylm 29.4 4.2E+02 0.009 24.8 9.1 93 92-205 23-130 (363)
202 COG1168 MalY Bifunctional PLP- 29.1 5E+02 0.011 24.6 11.8 75 28-118 40-117 (388)
203 COG1104 NifS Cysteine sulfinat 29.0 1.4E+02 0.003 28.3 5.7 68 137-206 102-177 (386)
204 cd03314 MAL Methylaspartate am 28.9 4.9E+02 0.011 24.4 9.5 69 139-209 244-321 (369)
205 PRK14469 ribosomal RNA large s 28.9 4E+02 0.0088 24.6 8.9 96 111-209 212-323 (343)
206 PF04413 Glycos_transf_N: 3-De 28.9 1.2E+02 0.0025 25.5 4.8 92 98-207 4-125 (186)
207 COG2159 Predicted metal-depend 28.8 4.4E+02 0.0095 23.8 10.1 97 100-211 55-168 (293)
208 COG2987 HutU Urocanate hydrata 28.6 1.3E+02 0.0028 29.1 5.4 106 55-183 150-267 (561)
209 cd00423 Pterin_binding Pterin 28.5 2.6E+02 0.0056 24.6 7.3 107 88-209 22-129 (258)
210 COG1038 PycA Pyruvate carboxyl 28.3 5.4E+02 0.012 27.2 9.9 146 29-213 17-171 (1149)
211 cd04731 HisF The cyclase subun 28.2 3.9E+02 0.0085 23.0 10.2 119 35-171 86-214 (243)
212 PF01527 HTH_Tnp_1: Transposas 28.2 15 0.00033 25.4 -0.6 40 26-65 7-47 (76)
213 smart00857 Resolvase Resolvase 28.0 1.6E+02 0.0034 23.0 5.4 52 93-158 51-102 (148)
214 cd07945 DRE_TIM_CMS Leptospira 28.0 4.4E+02 0.0096 23.6 10.5 127 10-161 5-139 (280)
215 PRK13561 putative diguanylate 27.6 3.1E+02 0.0068 27.6 8.6 116 76-206 486-610 (651)
216 PRK04175 rpl7ae 50S ribosomal 27.6 2.3E+02 0.0049 22.0 5.9 64 137-206 16-79 (122)
217 PRK09058 coproporphyrinogen II 27.6 5.6E+02 0.012 24.7 10.3 110 32-160 163-302 (449)
218 CHL00200 trpA tryptophan synth 27.6 3.6E+02 0.0078 24.0 8.0 75 135-209 27-128 (263)
219 PRK14470 ribosomal RNA large s 27.5 3.1E+02 0.0067 25.4 7.8 98 111-211 208-322 (336)
220 COG2200 Rtn c-di-GMP phosphodi 27.4 4.2E+02 0.0092 23.2 11.4 131 55-207 69-213 (256)
221 COG2861 Uncharacterized protei 27.4 4.3E+02 0.0094 23.3 10.3 54 109-163 78-131 (250)
222 PRK10391 oriC-binding nucleoid 27.4 50 0.0011 22.9 1.9 50 256-305 12-68 (71)
223 PF13378 MR_MLE_C: Enolase C-t 27.2 95 0.0021 23.1 3.7 49 158-208 3-54 (111)
224 TIGR00612 ispG_gcpE 1-hydroxy- 27.1 5.1E+02 0.011 24.1 9.5 72 134-205 55-126 (346)
225 cd00959 DeoC 2-deoxyribose-5-p 27.1 1.8E+02 0.004 24.5 5.9 77 21-105 123-202 (203)
226 PLN02363 phosphoribosylanthran 27.0 1.9E+02 0.0041 25.7 6.0 68 100-184 63-131 (256)
227 PF01904 DUF72: Protein of unk 26.8 2.8E+02 0.006 24.0 7.0 75 35-118 12-96 (230)
228 COG2355 Zn-dependent dipeptida 26.8 5E+02 0.011 23.8 10.2 108 30-159 150-260 (313)
229 cd03317 NAAAR N-acylamino acid 26.6 2.9E+02 0.0064 25.4 7.6 143 29-209 139-288 (354)
230 PLN02389 biotin synthase 26.6 5.5E+02 0.012 24.2 11.8 105 26-151 116-227 (379)
231 COG1831 Predicted metal-depend 26.5 2.4E+02 0.0053 25.3 6.4 66 136-201 106-185 (285)
232 PF01081 Aldolase: KDPG and KH 26.4 1.3E+02 0.0028 25.6 4.7 59 140-205 47-106 (196)
233 PRK06256 biotin synthase; Vali 26.2 5E+02 0.011 23.6 9.1 72 134-206 91-168 (336)
234 cd01976 Nitrogenase_MoFe_alpha 25.9 5.8E+02 0.013 24.3 16.8 144 51-209 79-252 (421)
235 cd03328 MR_like_3 Mandelate ra 25.8 1.8E+02 0.0039 27.0 6.0 66 139-206 221-292 (352)
236 cd01966 Nitrogenase_NifN_1 Nit 25.8 4.5E+02 0.0097 25.1 8.8 112 51-175 62-186 (417)
237 PLN00191 enolase 25.8 4.6E+02 0.01 25.5 8.9 91 98-209 302-397 (457)
238 PF04748 Polysacc_deac_2: Dive 25.7 2.8E+02 0.006 23.8 6.7 84 26-114 71-182 (213)
239 cd01320 ADA Adenosine deaminas 25.6 5E+02 0.011 23.4 16.8 71 135-209 171-242 (325)
240 PF14871 GHL6: Hypothetical gl 25.6 70 0.0015 25.2 2.8 21 190-210 47-67 (132)
241 cd00950 DHDPS Dihydrodipicolin 25.6 4.7E+02 0.01 23.1 11.1 29 25-53 17-45 (284)
242 PRK14478 nitrogenase molybdenu 25.6 6.3E+02 0.014 24.6 12.9 109 51-175 100-219 (475)
243 COG4555 NatA ABC-type Na+ tran 25.5 1.5E+02 0.0031 25.8 4.7 36 134-171 167-202 (245)
244 TIGR03551 F420_cofH 7,8-dideme 25.4 3.4E+02 0.0074 25.0 7.8 70 134-205 70-156 (343)
245 PRK13753 dihydropteroate synth 25.4 5E+02 0.011 23.4 11.4 65 139-210 65-129 (279)
246 KOG0258 Alanine aminotransfera 25.3 6.1E+02 0.013 24.3 13.7 200 24-258 196-438 (475)
247 COG0135 TrpF Phosphoribosylant 25.3 1.2E+02 0.0025 26.1 4.2 48 94-162 65-112 (208)
248 COG5310 Homospermidine synthas 25.2 5.7E+02 0.012 23.9 9.5 150 33-206 51-212 (481)
249 TIGR00423 radical SAM domain p 25.2 5.1E+02 0.011 23.4 10.6 86 87-204 36-121 (309)
250 cd00408 DHDPS-like Dihydrodipi 25.2 4.8E+02 0.01 23.0 11.8 97 25-149 14-121 (281)
251 COG3653 N-acyl-D-aspartate/D-g 25.2 6.4E+02 0.014 24.5 13.7 80 31-118 184-279 (579)
252 TIGR00314 cdhA CO dehydrogenas 25.1 3.7E+02 0.008 28.1 8.3 75 135-214 245-335 (784)
253 TIGR03586 PseI pseudaminic aci 25.0 5.5E+02 0.012 23.7 11.0 134 26-185 74-225 (327)
254 PRK09282 pyruvate carboxylase 24.8 5.1E+02 0.011 26.1 9.3 120 93-234 28-163 (592)
255 TIGR00221 nagA N-acetylglucosa 24.6 5.9E+02 0.013 23.9 10.6 35 138-172 178-212 (380)
256 cd02930 DCR_FMN 2,4-dienoyl-Co 24.5 5.7E+02 0.012 23.7 12.9 91 73-173 202-299 (353)
257 PRK04390 rnpA ribonuclease P; 24.5 2.8E+02 0.0061 21.3 5.9 64 72-148 44-109 (120)
258 TIGR03822 AblA_like_2 lysine-2 24.5 5.5E+02 0.012 23.5 12.2 75 136-212 152-239 (321)
259 PRK01060 endonuclease IV; Prov 24.4 3.2E+02 0.007 24.0 7.2 21 96-117 17-37 (281)
260 PF09012 FeoC: FeoC like trans 24.3 1E+02 0.0023 20.9 3.2 27 134-160 26-52 (69)
261 cd01821 Rhamnogalacturan_acety 24.3 3.8E+02 0.0083 21.9 7.3 88 151-238 36-149 (198)
262 cd01822 Lysophospholipase_L1_l 24.1 3.6E+02 0.0079 21.3 7.0 60 149-208 36-109 (177)
263 KOG1196 Predicted NAD-dependen 24.0 1E+02 0.0022 28.3 3.7 98 30-155 211-310 (343)
264 COG0809 QueA S-adenosylmethion 23.8 1.1E+02 0.0024 28.2 4.0 66 139-209 188-258 (348)
265 PRK11858 aksA trans-homoaconit 23.8 6.1E+02 0.013 23.8 14.5 224 13-282 129-367 (378)
266 PRK08776 cystathionine gamma-s 23.7 6.3E+02 0.014 23.9 9.4 72 138-210 111-185 (405)
267 COG1131 CcmA ABC-type multidru 23.7 1.1E+02 0.0024 27.6 4.0 65 92-170 141-205 (293)
268 PLN03228 methylthioalkylmalate 23.6 6.5E+02 0.014 24.8 9.5 98 92-209 107-231 (503)
269 COG2185 Sbm Methylmalonyl-CoA 23.5 2.2E+02 0.0047 22.9 5.1 74 152-237 17-93 (143)
270 PRK14332 (dimethylallyl)adenos 23.4 5.4E+02 0.012 24.8 8.9 125 132-269 181-326 (449)
271 COG4943 Predicted signal trans 23.4 7.2E+02 0.016 24.4 10.0 115 73-206 351-477 (524)
272 PRK10060 RNase II stability mo 23.4 6.8E+02 0.015 25.4 10.1 114 75-206 492-617 (663)
273 TIGR03217 4OH_2_O_val_ald 4-hy 23.3 5.9E+02 0.013 23.5 13.2 26 24-49 19-44 (333)
274 PF13289 SIR2_2: SIR2-like dom 23.3 2.4E+02 0.0053 21.6 5.6 101 103-204 38-143 (143)
275 PRK08195 4-hyroxy-2-oxovalerat 23.3 6E+02 0.013 23.5 9.2 111 86-208 21-136 (337)
276 PRK04165 acetyl-CoA decarbonyl 23.1 6.5E+02 0.014 24.4 9.2 81 107-208 127-209 (450)
277 PF03599 CdhD: CO dehydrogenas 23.1 5.2E+02 0.011 24.5 8.3 84 107-210 69-154 (386)
278 PRK13347 coproporphyrinogen II 23.0 6.8E+02 0.015 24.1 9.9 113 32-160 152-289 (453)
279 COG0352 ThiE Thiamine monophos 22.9 2.9E+02 0.0064 23.7 6.3 63 140-209 94-167 (211)
280 PRK14340 (dimethylallyl)adenos 22.9 6.6E+02 0.014 24.2 9.4 34 15-49 8-41 (445)
281 COG2109 BtuR ATP:corrinoid ade 22.8 3.2E+02 0.007 23.2 6.2 70 90-170 105-174 (198)
282 TIGR00433 bioB biotin syntheta 22.7 5.4E+02 0.012 22.8 9.7 71 134-207 62-140 (296)
283 cd04743 NPD_PKS 2-Nitropropane 22.7 4.5E+02 0.0097 24.2 7.8 64 144-207 21-89 (320)
284 KOG1720 Protein tyrosine phosp 22.7 2.5E+02 0.0055 24.2 5.6 56 191-257 139-195 (225)
285 PRK14052 effector protein; Pro 22.5 1.7E+02 0.0036 26.9 4.7 69 239-313 242-314 (387)
286 TIGR03822 AblA_like_2 lysine-2 22.1 6.1E+02 0.013 23.1 13.1 103 29-151 122-228 (321)
287 TIGR03217 4OH_2_O_val_ald 4-hy 22.0 6.3E+02 0.014 23.3 9.3 112 86-207 20-134 (333)
288 COG1217 TypA Predicted membran 22.0 5.6E+02 0.012 25.2 8.3 41 73-113 121-163 (603)
289 cd03768 SR_ResInv Serine Recom 21.8 1.9E+02 0.0042 21.8 4.7 49 93-157 42-90 (126)
290 PRK09140 2-dehydro-3-deoxy-6-p 21.7 3.8E+02 0.0083 22.8 6.8 25 243-267 97-121 (206)
291 TIGR01285 nifN nitrogenase mol 21.7 5.5E+02 0.012 24.6 8.6 113 51-176 72-197 (432)
292 PRK00730 rnpA ribonuclease P; 21.6 3.1E+02 0.0068 21.9 5.7 63 72-149 46-110 (138)
293 PLN02775 Probable dihydrodipic 21.6 3.9E+02 0.0085 24.2 7.0 60 94-171 66-125 (286)
294 PRK14476 nitrogenase molybdenu 21.5 4.6E+02 0.0099 25.4 8.0 112 51-175 73-197 (455)
295 PLN02321 2-isopropylmalate syn 21.4 4.5E+02 0.0097 26.8 8.1 100 92-211 109-234 (632)
296 TIGR01428 HAD_type_II 2-haloal 21.4 1.6E+02 0.0034 24.3 4.4 37 136-173 94-130 (198)
297 PF13407 Peripla_BP_4: Peripla 21.3 5.1E+02 0.011 21.9 9.1 53 91-163 15-67 (257)
298 PRK09490 metH B12-dependent me 21.3 1.2E+03 0.025 26.1 16.1 214 27-271 63-329 (1229)
299 PF01248 Ribosomal_L7Ae: Ribos 21.3 2.7E+02 0.0059 20.0 5.1 64 138-207 2-65 (95)
300 PRK10528 multifunctional acyl- 21.1 3.7E+02 0.008 22.1 6.6 61 146-206 40-114 (191)
301 PRK00499 rnpA ribonuclease P; 21.0 3.8E+02 0.0081 20.3 6.1 64 72-149 38-104 (114)
302 COG1121 ZnuC ABC-type Mn/Zn tr 21.0 1.3E+02 0.0028 26.7 3.8 50 106-168 156-205 (254)
303 PRK06552 keto-hydroxyglutarate 20.9 2.8E+02 0.006 23.8 5.8 66 133-205 45-114 (213)
304 PRK02714 O-succinylbenzoate sy 20.9 4.8E+02 0.01 23.7 7.8 68 140-209 206-274 (320)
305 TIGR01459 HAD-SF-IIA-hyp4 HAD- 20.9 4.4E+02 0.0095 22.7 7.2 19 134-152 24-42 (242)
306 TIGR03471 HpnJ hopanoid biosyn 20.9 7.6E+02 0.016 23.8 10.5 123 134-268 227-360 (472)
307 TIGR03849 arch_ComA phosphosul 20.9 5.4E+02 0.012 22.6 7.5 97 93-205 11-118 (237)
308 PRK14455 ribosomal RNA large s 20.8 5.3E+02 0.011 24.1 8.0 97 111-210 223-336 (356)
309 PRK15408 autoinducer 2-binding 20.8 6.5E+02 0.014 23.0 9.6 76 72-168 22-97 (336)
310 PF02679 ComA: (2R)-phospho-3- 20.7 5.7E+02 0.012 22.5 7.7 98 93-205 24-131 (244)
311 COG0159 TrpA Tryptophan syntha 20.7 6.2E+02 0.013 22.7 12.6 52 175-236 95-148 (265)
312 PRK14467 ribosomal RNA large s 20.7 6.9E+02 0.015 23.2 11.9 126 73-212 98-262 (348)
313 TIGR01917 gly_red_sel_B glycin 20.6 4.2E+02 0.009 25.5 7.2 69 140-209 289-373 (431)
314 PF02581 TMP-TENI: Thiamine mo 20.6 1.7E+02 0.0036 24.1 4.3 51 154-209 97-158 (180)
315 TIGR00289 conserved hypothetic 20.5 5.6E+02 0.012 22.1 8.3 84 190-287 75-168 (222)
316 PF05049 IIGP: Interferon-indu 20.5 1.3E+02 0.0029 28.3 3.9 101 20-145 95-215 (376)
317 PF00154 RecA: recA bacterial 20.1 4.7E+02 0.01 24.1 7.4 90 98-206 96-186 (322)
No 1
>COG0656 ARA1 Aldo/keto reductases, related to diketogulonate reductase [General function prediction only]
Probab=100.00 E-value=1e-64 Score=445.40 Aligned_cols=262 Identities=46% Similarity=0.801 Sum_probs=246.1
Q ss_pred CCCeeEcCCCCccCccccccCcCCcch-HHHHHHHHHHhCCcEEecCCCCCCHHHHHHHHHHhhhcCCcCCCCeEEeecc
Q 021264 4 ENGYFELNTGAKMPSVGLGTWQADPGI-VGNAVDVAIKAGYRHIDCARLYLNEKEIGFVLKKLFEDGVVKREDLWITSKL 82 (315)
Q Consensus 4 ~m~~~~l~tg~~vs~lglG~~~~~~~~-~~~~l~~A~~~Gi~~~DtA~~Ygse~~lG~~l~~~~~~~~~~R~~~~i~tK~ 82 (315)
+|.+.+|++|.+||.||||||+.+..+ ..+.+..|++.|+|+||||..||||+.+|+++++. | ++|+++||+||+
T Consensus 2 ~~~~~~l~~g~~iP~iGlGt~~~~~~~~~~~av~~Al~~Gyr~IDTA~~YgnE~~VG~aI~~s---~-v~ReelFittKv 77 (280)
T COG0656 2 MKTKVTLNNGVEIPAIGLGTWQIGDDEWAVRAVRAALELGYRLIDTAEIYGNEEEVGEAIKES---G-VPREELFITTKV 77 (280)
T ss_pred CCceeecCCCCcccCcceEeeecCCchhHHHHHHHHHHhCcceEecHhHhcCHHHHHHHHHhc---C-CCHHHeEEEeec
Confidence 456788888999999999999988877 99999999999999999999999999999999983 4 799999999999
Q ss_pred CCCCCCCCcHHHHHHHHHHhcCCCccceEeeecCCCccCCCCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeeEeecCCCh
Q 021264 83 WCTDLAPKDVPEALDNTLQDLQIDYVDLYLIHWPARMKKGSVGFNPENLLPLDIPSTWRAMEALYDSGKARAIGVCNFST 162 (315)
Q Consensus 83 ~~~~~~~~~i~~~ve~sL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~L~~lk~~GkIr~iGvS~~~~ 162 (315)
|+.+.+++.+.+++++||++||+||+|||+||||... .. ....++|++|++++++||||+||||||+.
T Consensus 78 w~~~~~~~~~~~a~e~Sl~rLg~dyvDLyLiHwP~~~-~~-----------~~~~etw~alE~l~~~G~ir~IGVSNF~~ 145 (280)
T COG0656 78 WPSDLGYDETLKALEASLKRLGLDYVDLYLIHWPVPN-KY-----------VVIEETWKALEELVDEGLIRAIGVSNFGV 145 (280)
T ss_pred CCccCCcchHHHHHHHHHHHhCCCceeEEEECCCCCc-cC-----------ccHHHHHHHHHHHHhcCCccEEEeeCCCH
Confidence 9999999999999999999999999999999999763 11 23789999999999999999999999999
Q ss_pred hhHHHHHHhcCCCCcccccccCcccchHHHHHHHHHcCceEEEecCCCCCCCCCCccccCCchHHHHHHHHhCCCHHHHH
Q 021264 163 KKLGDLLEIARVPPAVNQVECHSSWQQQKLHAFCKSKGVHLSGYSPLGSPGTRWIKSDVLRHPVLKTAAEKLGKTPAQVA 242 (315)
Q Consensus 163 ~~l~~~~~~~~~~~~~~q~~~n~~~~~~~~~~~~~~~gi~v~~~~pl~~gg~~~~~~~~~~~~~l~~la~~~~~s~aq~a 242 (315)
++++++++...+.|+++|+.|+++.++.+++++|+++||.+++|+||+.|+ .++..+.+.++|++||.|++|++
T Consensus 146 ~~L~~l~~~~~~~p~~NQIe~hp~~~q~el~~~~~~~gI~v~AysPL~~g~------~l~~~~~l~~Ia~k~g~t~AQv~ 219 (280)
T COG0656 146 EHLEELLSLAKVKPAVNQIEYHPYLRQPELLPFCQRHGIAVEAYSPLAKGG------KLLDNPVLAEIAKKYGKTPAQVA 219 (280)
T ss_pred HHHHHHHHhcCCCCceEEEEeccCCCcHHHHHHHHHcCCEEEEECCccccc------ccccChHHHHHHHHhCCCHHHHH
Confidence 999999999889999999999999999999999999999999999998754 27888999999999999999999
Q ss_pred HHHHhhcCCeeecCCCCHHHHHHhhcccCcccCHHHHHHHHhchh
Q 021264 243 LRWGLQMGHSVLPKSTNEARIKENFDIFDWSISEDLFVKFSEIEQ 287 (315)
Q Consensus 243 l~~~l~~~~~~i~G~~~~~~l~~nl~a~~~~Lt~e~~~~l~~~~~ 287 (315)
|+|++++|+++||.+++++|+++|++++++.||+||++.|+++..
T Consensus 220 L~W~i~~gv~~Ipks~~~~ri~eN~~~~~f~Ls~ed~~~i~~l~~ 264 (280)
T COG0656 220 LRWHIQRGVIVIPKSTTPERIRENLAAFDFELSEEDMAAIDALDR 264 (280)
T ss_pred HHHHHhCCcEEecCCCCHHHHHHHHhhhcCCCCHHHHHHHHhhcc
Confidence 999999999999999999999999999999999999999999977
No 2
>KOG1577 consensus Aldo/keto reductase family proteins [General function prediction only]
Probab=100.00 E-value=7.5e-62 Score=427.23 Aligned_cols=282 Identities=55% Similarity=0.912 Sum_probs=257.2
Q ss_pred CCCCCCeeEcCCCCccCccccccCcCCcchHHHHHHHHHHhCCcEEecCCCCCCHHHHHHHHHHhhhcCCcCCCCeEEee
Q 021264 1 MANENGYFELNTGAKMPSVGLGTWQADPGIVGNAVDVAIKAGYRHIDCARLYLNEKEIGFVLKKLFEDGVVKREDLWITS 80 (315)
Q Consensus 1 ~~~~m~~~~l~tg~~vs~lglG~~~~~~~~~~~~l~~A~~~Gi~~~DtA~~Ygse~~lG~~l~~~~~~~~~~R~~~~i~t 80 (315)
|+..- +.+|++|.++|.||||||+.+++++...+..|++.|+++||||..||+|+-+|.+|++.+.++.++|+++||+|
T Consensus 1 M~~~~-~~~Ln~G~~mP~iGlGTw~~~~~~~~~aV~~Al~~GYRHIDtA~~Y~NE~evG~aik~~i~~~~v~RediFiTS 79 (300)
T KOG1577|consen 1 MSSKT-TVKLNNGFKMPIIGLGTWQSPPGQVAEAVKAAIKAGYRHIDTAHVYGNEKEVGEAIKELLAEGGVKREDIFITS 79 (300)
T ss_pred CCccc-eEeccCCCccceeeeEecccChhhHHHHHHHHHHhCcceeechhhhCChHHHHHHHHHHhhhCCcchhhheeee
Confidence 55444 78889999999999999999999999999999999999999999999999999999999988889999999999
Q ss_pred ccCCCCCCCCcHHHHHHHHHHhcCCCccceEeeecCCCccCCCCCCC---CCCCCCCCHHHHHHHHHHHHhcCCeeeEee
Q 021264 81 KLWCTDLAPKDVPEALDNTLQDLQIDYVDLYLIHWPARMKKGSVGFN---PENLLPLDIPSTWRAMEALYDSGKARAIGV 157 (315)
Q Consensus 81 K~~~~~~~~~~i~~~ve~sL~~Lg~d~iDl~~lH~p~~~~~~~~~~~---~~~~~~~~~~~~~~~L~~lk~~GkIr~iGv 157 (315)
|+|+.++.++.++.++++||++||+||+|||++|||-..++ ....+ .......+..++|++|+++++.|++|+|||
T Consensus 80 Klw~~~~~~~~v~~al~~sLk~L~ldYvDLyLiH~P~~~k~-~~~~~~~~~~~~~~~~~~~tW~amE~~~~~Gl~rsIGV 158 (300)
T KOG1577|consen 80 KLWPTDHAPELVEKALEKSLKKLQLDYVDLYLIHWPVAFKD-SFPKDENGKVNYDDVDRIETWKAMEKLVDEGLVRSIGV 158 (300)
T ss_pred ccCccccChhhHHHHHHHHHHHhChhhhheeeEecccccCC-CCCcccccccccccchHHHHHHHHHHHHHcCCceEeee
Confidence 99998899999999999999999999999999999988633 00000 011112467899999999999999999999
Q ss_pred cCCChhhHHHHHHhcCCCCcccccccCcccchHHHHHHHHHcCceEEEecCCCCCCCCCCccccCCchHHHHHHHHhCCC
Q 021264 158 CNFSTKKLGDLLEIARVPPAVNQVECHSSWQQQKLHAFCKSKGVHLSGYSPLGSPGTRWIKSDVLRHPVLKTAAEKLGKT 237 (315)
Q Consensus 158 S~~~~~~l~~~~~~~~~~~~~~q~~~n~~~~~~~~~~~~~~~gi~v~~~~pl~~gg~~~~~~~~~~~~~l~~la~~~~~s 237 (315)
|||+..++++++..+.++|.++|+.++++.++.+++++|+++||.|.||+||+.++. . .+++..+.+.++|++||.|
T Consensus 159 SNF~~~~le~ll~~~ki~P~vnQvE~HP~~~Q~~L~~fCk~~~I~v~AYSpLg~~~~--~-~~ll~~~~l~~iA~K~~kt 235 (300)
T KOG1577|consen 159 SNFNIKQLEELLNLAKIKPAVNQVECHPYLQQKKLVEFCKSKGIVVTAYSPLGSPGR--G-SDLLEDPVLKEIAKKYNKT 235 (300)
T ss_pred ecCCHHHHHHHHhcCCCCCccceeeccCCcChHHHHHHHhhCCcEEEEecCCCCCCC--c-cccccCHHHHHHHHHhCCC
Confidence 999999999999999999999999999999999999999999999999999988664 1 1788999999999999999
Q ss_pred HHHHHHHHHhhcCCeeecCCCCHHHHHHhhcccCcccCHHHHHHHHhchh
Q 021264 238 PAQVALRWGLQMGHSVLPKSTNEARIKENFDIFDWSISEDLFVKFSEIEQ 287 (315)
Q Consensus 238 ~aq~al~~~l~~~~~~i~G~~~~~~l~~nl~a~~~~Lt~e~~~~l~~~~~ 287 (315)
|||++|||++++|++|||.++|+++++||+.++++.||++|++.|+....
T Consensus 236 ~aQIlLrw~~q~g~~vipKS~~~~Ri~eN~~vfdf~Lt~ed~~~i~~~~~ 285 (300)
T KOG1577|consen 236 PAQILLRWALQRGVSVIPKSSNPERIKENFKVFDFELTEEDMKKLDSLNS 285 (300)
T ss_pred HHHHHHHHHHhCCcEEEeccCCHHHHHHHHhhccccCCHHHHHHHhhccc
Confidence 99999999999999999999999999999999999999999999997765
No 3
>COG0667 Tas Predicted oxidoreductases (related to aryl-alcohol dehydrogenases) [Energy production and conversion]
Probab=100.00 E-value=1.1e-57 Score=415.55 Aligned_cols=262 Identities=32% Similarity=0.488 Sum_probs=232.7
Q ss_pred CCeeEc-CCCCccCccccccCcCC-------cchHHHHHHHHHHhCCcEEecCCCCC---CHHHHHHHHHHhhhcCCcCC
Q 021264 5 NGYFEL-NTGAKMPSVGLGTWQAD-------PGIVGNAVDVAIKAGYRHIDCARLYL---NEKEIGFVLKKLFEDGVVKR 73 (315)
Q Consensus 5 m~~~~l-~tg~~vs~lglG~~~~~-------~~~~~~~l~~A~~~Gi~~~DtA~~Yg---se~~lG~~l~~~~~~~~~~R 73 (315)
|+||+| ++|++||+||||||.+. .+++.++|++|+|+|||+||||+.|| ||+++|++|+.. + .|
T Consensus 1 m~~r~lG~~gl~vs~lglG~~~~g~~~~~~~~~~a~~il~~A~d~Gin~~DTA~~Yg~g~sE~ilG~~l~~~---~--~R 75 (316)
T COG0667 1 MKYRRLGRSGLKVSPLGLGTMTLGGDTDDEEEAEAIEILDAALDAGINFFDTADVYGDGRSEEILGEALKER---G--RR 75 (316)
T ss_pred CCceecCCCCceecceeeeccccCCCCCchhhhHHHHHHHHHHHcCCCEEECccccCCCchHHHHHHHHhcc---C--CC
Confidence 789999 89999999999998643 23566699999999999999999999 899999999985 2 28
Q ss_pred CCeEEeeccCCC----------CCCCCcHHHHHHHHHHhcCCCccceEeeecCCCccCCCCCCCCCCCCCCCHHHHHHHH
Q 021264 74 EDLWITSKLWCT----------DLAPKDVPEALDNTLQDLQIDYVDLYLIHWPARMKKGSVGFNPENLLPLDIPSTWRAM 143 (315)
Q Consensus 74 ~~~~i~tK~~~~----------~~~~~~i~~~ve~sL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~L 143 (315)
++++|+||++.. +.++++++++++.||+|||||||||||+|+|+.. .+.++++++|
T Consensus 76 d~vvIaTK~g~~~~~~~~~~~~~~s~~~i~~~v~~SL~RLgtd~IDl~~iH~~d~~--------------~p~~e~~~aL 141 (316)
T COG0667 76 DKVVIATKVGYRPGDPGPNGVFGLSRDHIRRAVEASLKRLGTDYIDLYQLHRPDPE--------------TPIEETLEAL 141 (316)
T ss_pred CeEEEEEeeccCCCCCCCCccCCCCHHHHHHHHHHHHHHhCCCceeEEEeCCCCCC--------------CCHHHHHHHH
Confidence 999999999642 3478899999999999999999999999999984 7789999999
Q ss_pred HHHHhcCCeeeEeecCCChhhHHHHHHhcCCCCcccccccCcccch--HHHHHHHHHcCceEEEecCCCCCCCCCCcccc
Q 021264 144 EALYDSGKARAIGVCNFSTKKLGDLLEIARVPPAVNQVECHSSWQQ--QKLHAFCKSKGVHLSGYSPLGSPGTRWIKSDV 221 (315)
Q Consensus 144 ~~lk~~GkIr~iGvS~~~~~~l~~~~~~~~~~~~~~q~~~n~~~~~--~~~~~~~~~~gi~v~~~~pl~~gg~~~~~~~~ 221 (315)
.+|+++||||+||+||++.+++.++.+.. .+++++|.+||+++++ .+++++|+++||++++|+||++ |+++++...
T Consensus 142 ~~l~~~G~ir~iG~S~~~~~~i~~a~~~~-~~~~~~Q~~ynl~~R~~e~~l~~~~~~~gi~~~~~spla~-G~Ltgk~~~ 219 (316)
T COG0667 142 DELVREGKIRYIGVSNYSAEQIAEALAVA-APIDSLQPEYNLLERDAEKELLPLCREEGIGLLAYSPLAS-GLLTGKYLP 219 (316)
T ss_pred HHHHHcCCeeEEEecCCCHHHHHHHHHhc-CCceeecccCccccccchhHHHHHHHHcCCeEEEecCccc-cccCCCcCC
Confidence 99999999999999999999999998876 6789999999999976 4589999999999999999988 666655221
Q ss_pred ------------CC----------chHHHHHHHHhCCCHHHHHHHHHhhcC--CeeecCCCCHHHHHHhhcccCcccCHH
Q 021264 222 ------------LR----------HPVLKTAAEKLGKTPAQVALRWGLQMG--HSVLPKSTNEARIKENFDIFDWSISED 277 (315)
Q Consensus 222 ------------~~----------~~~l~~la~~~~~s~aq~al~~~l~~~--~~~i~G~~~~~~l~~nl~a~~~~Lt~e 277 (315)
+. ...++++|+++|+||+|+||+|++++| +++|+|+++++||++|+++++..|+++
T Consensus 220 ~~~~~r~~~~~~~~~~~~~~~~~~~~~l~~~a~~~g~t~aq~ALawvl~~~~v~~~I~Ga~~~~qL~en~~A~~~~L~~~ 299 (316)
T COG0667 220 GPEGSRASELPRFQRELTERGLAILRALEELAKELGATPAQVALAWVLAQPGVTSPIVGASKAEQLEENLAALDIKLSEE 299 (316)
T ss_pred CcchhhccccccchhhhhHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHhCCCCceEeecCCCHHHHHHHHHHhcCCCCHH
Confidence 00 134889999999999999999999997 689999999999999999999999999
Q ss_pred HHHHHHhchh
Q 021264 278 LFVKFSEIEQ 287 (315)
Q Consensus 278 ~~~~l~~~~~ 287 (315)
+++.|++...
T Consensus 300 ~~~~l~~~~~ 309 (316)
T COG0667 300 ELAALDEISA 309 (316)
T ss_pred HHHHHHHHhh
Confidence 9999987654
No 4
>PRK11172 dkgB 2,5-diketo-D-gluconate reductase B; Provisional
Probab=100.00 E-value=2.8e-57 Score=405.67 Aligned_cols=250 Identities=34% Similarity=0.599 Sum_probs=228.5
Q ss_pred ccCccccccCcCCcchHHHHHHHHHHhCCcEEecCCCCCCHHHHHHHHHHhhhcCCcCCCCeEEeeccCCCCCCCCcHHH
Q 021264 15 KMPSVGLGTWQADPGIVGNAVDVAIKAGYRHIDCARLYLNEKEIGFVLKKLFEDGVVKREDLWITSKLWCTDLAPKDVPE 94 (315)
Q Consensus 15 ~vs~lglG~~~~~~~~~~~~l~~A~~~Gi~~~DtA~~Ygse~~lG~~l~~~~~~~~~~R~~~~i~tK~~~~~~~~~~i~~ 94 (315)
+||+||||||+.+.+++.++++.|++.|||+||||+.||+|+.+|++|+.. + ++|+++||+||++....+++.+++
T Consensus 2 ~vs~lglGt~~~~~~~~~~~i~~A~~~Gi~~~DTA~~Yg~E~~lG~al~~~---~-~~R~~v~i~TK~~~~~~~~~~~~~ 77 (267)
T PRK11172 2 SIPAFGLGTFRLKDQVVIDSVKTALELGYRAIDTAQIYDNEAAVGQAIAES---G-VPRDELFITTKIWIDNLAKDKLIP 77 (267)
T ss_pred CCCCEeeEccccChHHHHHHHHHHHHcCCCEEEccchhCCHHHHHHHHHHc---C-CChhHeEEEEEeCCCCCCHHHHHH
Confidence 689999999998888999999999999999999999999999999999863 3 479999999999766677889999
Q ss_pred HHHHHHHhcCCCccceEeeecCCCccCCCCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeeEeecCCChhhHHHHHHhcCC
Q 021264 95 ALDNTLQDLQIDYVDLYLIHWPARMKKGSVGFNPENLLPLDIPSTWRAMEALYDSGKARAIGVCNFSTKKLGDLLEIARV 174 (315)
Q Consensus 95 ~ve~sL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~L~~lk~~GkIr~iGvS~~~~~~l~~~~~~~~~ 174 (315)
++++||++||+||||+|++|+|++.. . .+.+++|++|++|+++||||+||||||+.++++++++....
T Consensus 78 ~~~~SL~rL~~d~iDl~~lH~~~~~~-~-----------~~~~~~~~~l~~l~~~Gkir~iGvSn~~~~~l~~~~~~~~~ 145 (267)
T PRK11172 78 SLKESLQKLRTDYVDLTLIHWPSPND-E-----------VSVEEFMQALLEAKKQGLTREIGISNFTIALMKQAIAAVGA 145 (267)
T ss_pred HHHHHHHHhCCCceEEEEeCCCCCCC-C-----------CCHHHHHHHHHHHHHCCCCCEEEEccCCHHHHHHHHHhcCC
Confidence 99999999999999999999987521 1 45689999999999999999999999999999998886554
Q ss_pred -CCcccccccCcccchHHHHHHHHHcCceEEEecCCCCCCCCCCccccCCchHHHHHHHHhCCCHHHHHHHHHhhcCCee
Q 021264 175 -PPAVNQVECHSSWQQQKLHAFCKSKGVHLSGYSPLGSPGTRWIKSDVLRHPVLKTAAEKLGKTPAQVALRWGLQMGHSV 253 (315)
Q Consensus 175 -~~~~~q~~~n~~~~~~~~~~~~~~~gi~v~~~~pl~~gg~~~~~~~~~~~~~l~~la~~~~~s~aq~al~~~l~~~~~~ 253 (315)
+++++|++||++.++.+++++|+++||+|++|+||++|. ++..+.+.++|+++|.|++|+||+|++++++++
T Consensus 146 ~~~~~~Q~~~~~~~~~~~ll~~~~~~gi~v~a~spl~~G~-------~~~~~~l~~~a~~~~~s~aqval~w~l~~~~~~ 218 (267)
T PRK11172 146 ENIATNQIELSPYLQNRKVVAFAKEHGIHVTSYMTLAYGK-------VLKDPVIARIAAKHNATPAQVILAWAMQLGYSV 218 (267)
T ss_pred CCCeEEeeecCCCCCcHHHHHHHHHCCCEEEEECCCCCCc-------ccCCHHHHHHHHHhCCCHHHHHHHHHHhCCCEe
Confidence 689999999999988899999999999999999998752 334578999999999999999999999999999
Q ss_pred ecCCCCHHHHHHhhcccCcccCHHHHHHHHhchh
Q 021264 254 LPKSTNEARIKENFDIFDWSISEDLFVKFSEIEQ 287 (315)
Q Consensus 254 i~G~~~~~~l~~nl~a~~~~Lt~e~~~~l~~~~~ 287 (315)
|+|+++++|+++|+++++++||+++++.|+++.+
T Consensus 219 i~g~~~~~~l~~n~~~~~~~L~~~~~~~i~~~~~ 252 (267)
T PRK11172 219 IPSSTKRENLASNLLAQDLQLDAEDMAAIAALDR 252 (267)
T ss_pred ecCCCCHHHHHHHHhhcCCCcCHHHHHHHhhhcc
Confidence 9999999999999999999999999999999875
No 5
>PRK11565 dkgA 2,5-diketo-D-gluconate reductase A; Provisional
Probab=100.00 E-value=6.7e-56 Score=398.06 Aligned_cols=262 Identities=42% Similarity=0.745 Sum_probs=235.7
Q ss_pred CCCCCCeeEcCCCCccCccccccCcCCcchHHHHHHHHHHhCCcEEecCCCCCCHHHHHHHHHHhhhcCCcCCCCeEEee
Q 021264 1 MANENGYFELNTGAKMPSVGLGTWQADPGIVGNAVDVAIKAGYRHIDCARLYLNEKEIGFVLKKLFEDGVVKREDLWITS 80 (315)
Q Consensus 1 ~~~~m~~~~l~tg~~vs~lglG~~~~~~~~~~~~l~~A~~~Gi~~~DtA~~Ygse~~lG~~l~~~~~~~~~~R~~~~i~t 80 (315)
|++.+ +.+|++|..||+||||||+.+.+++.++|++|++.|+|+||||+.||+|+.+|++|+.. + ++|++++|+|
T Consensus 1 ~~~~~-~~~l~~g~~v~~lglG~~~~~~~~~~~~l~~A~~~Gi~~~DTA~~Yg~E~~lG~al~~~---~-~~R~~~~i~t 75 (275)
T PRK11565 1 MANPT-VIKLQDGNVMPQLGLGVWQASNEEVITAIHKALEVGYRSIDTAAIYKNEEGVGKALKEA---S-VAREELFITT 75 (275)
T ss_pred CCCCc-eEEcCCCCccCCcceECccCCHHHHHHHHHHHHHhCCCEEEchhhhCCHHHHHHHHHHc---C-CCHHHEEEEE
Confidence 44433 35579999999999999998889999999999999999999999999999999999864 3 4699999999
Q ss_pred ccCCCCCCCCcHHHHHHHHHHhcCCCccceEeeecCCCccCCCCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeeEeecCC
Q 021264 81 KLWCTDLAPKDVPEALDNTLQDLQIDYVDLYLIHWPARMKKGSVGFNPENLLPLDIPSTWRAMEALYDSGKARAIGVCNF 160 (315)
Q Consensus 81 K~~~~~~~~~~i~~~ve~sL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~L~~lk~~GkIr~iGvS~~ 160 (315)
|++. .+++.+++++++||++||+||||+|++|+|+... ....++|++|++|+++||||+||||||
T Consensus 76 K~~~--~~~~~~~~~~~~sL~rL~~d~iDl~~lH~p~~~~-------------~~~~~~~~~l~~l~~~G~ir~iGvSn~ 140 (275)
T PRK11565 76 KLWN--DDHKRPREALEESLKKLQLDYVDLYLMHWPVPAI-------------DHYVEAWKGMIELQKEGLIKSIGVCNF 140 (275)
T ss_pred EecC--cchHHHHHHHHHHHHHhCCCceEEEEecCCCCCc-------------CcHHHHHHHHHHHHHcCCeeEEeeccC
Confidence 9964 3567899999999999999999999999997531 235799999999999999999999999
Q ss_pred ChhhHHHHHHhcCCCCcccccccCcccchHHHHHHHHHcCceEEEecCCCCCCCCCCccccCCchHHHHHHHHhCCCHHH
Q 021264 161 STKKLGDLLEIARVPPAVNQVECHSSWQQQKLHAFCKSKGVHLSGYSPLGSPGTRWIKSDVLRHPVLKTAAEKLGKTPAQ 240 (315)
Q Consensus 161 ~~~~l~~~~~~~~~~~~~~q~~~n~~~~~~~~~~~~~~~gi~v~~~~pl~~gg~~~~~~~~~~~~~l~~la~~~~~s~aq 240 (315)
+++++++++....++|.++|++|+++.++.+++++|+++||++++|+||++|+. ..+..+.+.++|+++|+|++|
T Consensus 141 ~~~~l~~~~~~~~v~~~~~Q~~~~~~~~~~~~~~~~~~~~i~~~a~spl~~G~~-----~~~~~~~l~~ia~~~g~s~aq 215 (275)
T PRK11565 141 QIHHLQRLIDETGVTPVINQIELHPLMQQRQLHAWNATHKIQTESWSPLAQGGK-----GVFDQKVIRDLADKYGKTPAQ 215 (275)
T ss_pred CHHHHHHHHHhCCCCceeeeeecCCccchHHHHHHHHHCCCEEEEEccCCCCCc-----ccccCHHHHHHHHHhCCCHHH
Confidence 999999998777778899999999999888999999999999999999986531 234567899999999999999
Q ss_pred HHHHHHhhcCCeeecCCCCHHHHHHhhcccCcccCHHHHHHHHhchh
Q 021264 241 VALRWGLQMGHSVLPKSTNEARIKENFDIFDWSISEDLFVKFSEIEQ 287 (315)
Q Consensus 241 ~al~~~l~~~~~~i~G~~~~~~l~~nl~a~~~~Lt~e~~~~l~~~~~ 287 (315)
+||+|+++++.++|+|+++++|+++|+++++++||+++++.|+++..
T Consensus 216 ~aL~w~l~~~~~~I~g~~~~~~i~~n~~a~~~~Ls~~~~~~i~~~~~ 262 (275)
T PRK11565 216 IVIRWHLDSGLVVIPKSVTPSRIAENFDVFDFRLDKDELGEIAKLDQ 262 (275)
T ss_pred HHHHHHHcCCCEeeCCCCCHHHHHHHHhccCCCcCHHHHHHHHhhcc
Confidence 99999999998899999999999999999999999999999999865
No 6
>KOG1575 consensus Voltage-gated shaker-like K+ channel, subunit beta/KCNAB [Energy production and conversion]
Probab=100.00 E-value=4.1e-56 Score=397.96 Aligned_cols=273 Identities=29% Similarity=0.413 Sum_probs=242.5
Q ss_pred CCCeeEc-CCCCccCccccccC-------cCCcchHHHHHHHHHHhCCcEEecCCCCC---CHHHHHHHHHHhhhcCCcC
Q 021264 4 ENGYFEL-NTGAKMPSVGLGTW-------QADPGIVGNAVDVAIKAGYRHIDCARLYL---NEKEIGFVLKKLFEDGVVK 72 (315)
Q Consensus 4 ~m~~~~l-~tg~~vs~lglG~~-------~~~~~~~~~~l~~A~~~Gi~~~DtA~~Yg---se~~lG~~l~~~~~~~~~~ 72 (315)
.|+|+++ +.|++||++||||| +.+.+++.+++++|+|+|+|+||||.+|| ||.++|++|++. + .+
T Consensus 11 ~~~~~~lg~~gl~Vs~lglG~m~~~~~~~~~~~e~a~~~m~~a~e~Gin~fDtAe~Yg~~~~E~llg~~i~~~---~-~~ 86 (336)
T KOG1575|consen 11 GMLRRKLGNSGLKVSPLGLGCMGWTTFGGQIDKEEAFELLDHAYEAGINFFDTAEVYGNGQSEELLGEFIKSR---G-WR 86 (336)
T ss_pred cceeeeccCCCceecceeecceeeeccccCCCHHHHHHHHHHHHHcCCCEEehhhhcCCcccHHHHHHHHHhc---C-Cc
Confidence 3789999 88999999999994 25889999999999999999999999999 799999999985 2 47
Q ss_pred CCCeEEeeccCCC-------CCCCCcHHHHHHHHHHhcCCCccceEeeecCCCccCCCCCCCCCCCCCCCHHHHHHHHHH
Q 021264 73 REDLWITSKLWCT-------DLAPKDVPEALDNTLQDLQIDYVDLYLIHWPARMKKGSVGFNPENLLPLDIPSTWRAMEA 145 (315)
Q Consensus 73 R~~~~i~tK~~~~-------~~~~~~i~~~ve~sL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~L~~ 145 (315)
|++++|+||++.. ..+...+...++.|+++||++|||+||+||+|+. .+.++++++|.+
T Consensus 87 R~~vviaTK~~~~~~~~~~~G~~~~~i~~~~~~s~~rl~~~~IDl~q~Hr~D~~--------------~piee~m~aL~~ 152 (336)
T KOG1575|consen 87 RDKVVIATKFGFDYGGETPRGLSRKHIIEGVRDSLRRLQTDYIDLLQVHRWDPM--------------VPIEETMRALTD 152 (336)
T ss_pred CCcEEEEEEEeccCCCcCCCCCcHHHHHHHHHHHHHhcCCCeeEEEEEcccCCC--------------CCHHHHHHHHHH
Confidence 9999999999542 2345678999999999999999999999999986 788999999999
Q ss_pred HHhcCCeeeEeecCCChhhHHHHHHhcCCCCcccccccCcccch---HHHHHHHHHcCceEEEecCCCCCCCCCCcccc-
Q 021264 146 LYDSGKARAIGVCNFSTKKLGDLLEIARVPPAVNQVECHSSWQQ---QKLHAFCKSKGVHLSGYSPLGSPGTRWIKSDV- 221 (315)
Q Consensus 146 lk~~GkIr~iGvS~~~~~~l~~~~~~~~~~~~~~q~~~n~~~~~---~~~~~~~~~~gi~v~~~~pl~~gg~~~~~~~~- 221 (315)
++++|||++||+|+++.+++.++...+.+++.++|+.||++.++ .++++.|++.||++++|+||++ |+++++...
T Consensus 153 lve~Gki~yiGlSe~sa~~I~~a~~~~~~p~~s~Q~eysl~~Rd~ee~~i~~~c~~~Gi~li~ysPL~~-G~Ltgk~~~~ 231 (336)
T KOG1575|consen 153 LVEQGKIRYWGLSEWSAEEIREAHAVAPIPIVAVQVEYSLLSRDKEERGIIPLCRELGIGLIAWSPLGR-GLLTGKYKLG 231 (336)
T ss_pred HHhcCceEEEEeccCCHHHHHHHHHhcCCCceEeeeechhhhcchhhhhHHHHHHHcCcceEEeccccc-ceeccCcccc
Confidence 99999999999999999999999999888899999999999998 5699999999999999999977 677655210
Q ss_pred ----------------CC----------chHHHHHHHHhCCCHHHHHHHHHhhcC--CeeecCCCCHHHHHHhhcccCcc
Q 021264 222 ----------------LR----------HPVLKTAAEKLGKTPAQVALRWGLQMG--HSVLPKSTNEARIKENFDIFDWS 273 (315)
Q Consensus 222 ----------------~~----------~~~l~~la~~~~~s~aq~al~~~l~~~--~~~i~G~~~~~~l~~nl~a~~~~ 273 (315)
.. ...+.++|+++|+|++|+||+|+++++ +++|||+++++|++||++|+.+.
T Consensus 232 e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iA~k~g~T~~qlALawv~~~~~v~~pIpG~s~ve~l~eni~Al~~~ 311 (336)
T KOG1575|consen 232 EDSRNGDKRFQFLGLSPQTEEGDKQKPILEALSKIAEKHGCTVPQLALAWVLSNGKVSSPIPGASKIEQLKENIGALSVK 311 (336)
T ss_pred cccccccccccccccccccchhhhHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhCCCEEecCCCCcHHHHHHHHhhhhcc
Confidence 00 134889999999999999999999998 78999999999999999999999
Q ss_pred cCHHHHHHHHhchhhhhccccc
Q 021264 274 ISEDLFVKFSEIEQARLIRGTA 295 (315)
Q Consensus 274 Lt~e~~~~l~~~~~~~~~~g~~ 295 (315)
||++++..|+++.+.....+..
T Consensus 312 Lt~e~~~~l~~~~~~~~~~~~~ 333 (336)
T KOG1575|consen 312 LTPEEIKELEEIIDKILGFGPR 333 (336)
T ss_pred CCHHHHHHHHHhhccccCcCCC
Confidence 9999999999988755554443
No 7
>PRK09912 L-glyceraldehyde 3-phosphate reductase; Provisional
Probab=100.00 E-value=3.7e-55 Score=405.46 Aligned_cols=267 Identities=23% Similarity=0.352 Sum_probs=229.0
Q ss_pred CCCCeeEc-CCCCccCccccccCc-C----CcchHHHHHHHHHHhCCcEEecCCCCC-----CHHHHHHHHHHhhhcCCc
Q 021264 3 NENGYFEL-NTGAKMPSVGLGTWQ-A----DPGIVGNAVDVAIKAGYRHIDCARLYL-----NEKEIGFVLKKLFEDGVV 71 (315)
Q Consensus 3 ~~m~~~~l-~tg~~vs~lglG~~~-~----~~~~~~~~l~~A~~~Gi~~~DtA~~Yg-----se~~lG~~l~~~~~~~~~ 71 (315)
..|+||+| +||++||+||||||+ . +.+++.++|++|+++|||+||||+.|| +|+.+|++|+... ..
T Consensus 11 ~~m~~r~lg~tg~~vs~lglG~~~~~g~~~~~~~~~~~l~~A~~~Gin~~DTA~~YG~~~g~sE~~lG~~l~~~~---~~ 87 (346)
T PRK09912 11 GQMQYRYCGKSGLRLPALSLGLWHNFGHVNALESQRAILRKAFDLGITHFDLANNYGPPPGSAEENFGRLLREDF---AA 87 (346)
T ss_pred CCcceeecCCCCcccccccccCccccCCCCCHHHHHHHHHHHHHCCCCEEEChhhhCCCCCCcHHHHHHHHHhcc---cC
Confidence 46999999 999999999999996 2 346688999999999999999999998 6999999998631 12
Q ss_pred CCCCeEEeeccCCC--------CCCCCcHHHHHHHHHHhcCCCccceEeeecCCCccCCCCCCCCCCCCCCCHHHHHHHH
Q 021264 72 KREDLWITSKLWCT--------DLAPKDVPEALDNTLQDLQIDYVDLYLIHWPARMKKGSVGFNPENLLPLDIPSTWRAM 143 (315)
Q Consensus 72 ~R~~~~i~tK~~~~--------~~~~~~i~~~ve~sL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~L 143 (315)
+|++++|+||++.. ..+++.+++++++||++||+||||+|++|+|+.. .+.+++|++|
T Consensus 88 ~Rd~~~I~TK~g~~~~~~~~~~~~s~~~i~~~~e~SL~rLg~d~iDl~~lH~~~~~--------------~~~~e~~~al 153 (346)
T PRK09912 88 YRDELIISTKAGYDMWPGPYGSGGSRKYLLASLDQSLKRMGLEYVDIFYSHRVDEN--------------TPMEETASAL 153 (346)
T ss_pred CCCeEEEEEEecccCCCCcCCCCCCHHHHHHHHHHHHHHHCCCcEEEEEeCCCCCC--------------CCHHHHHHHH
Confidence 59999999998531 2356789999999999999999999999999753 5678999999
Q ss_pred HHHHhcCCeeeEeecCCChhhHHHHHHh---cCCCCcccccccCcccch---HHHHHHHHHcCceEEEecCCCCCCCCCC
Q 021264 144 EALYDSGKARAIGVCNFSTKKLGDLLEI---ARVPPAVNQVECHSSWQQ---QKLHAFCKSKGVHLSGYSPLGSPGTRWI 217 (315)
Q Consensus 144 ~~lk~~GkIr~iGvS~~~~~~l~~~~~~---~~~~~~~~q~~~n~~~~~---~~~~~~~~~~gi~v~~~~pl~~gg~~~~ 217 (315)
++|+++||||+||||||++++++++.+. ..+++.++|++||++++. .+++++|+++||++++|+||++ |++++
T Consensus 154 ~~l~~~GkIr~iGvSn~~~~~~~~~~~~~~~~~~~~~~~Q~~ynll~~~~~~~~ll~~~~~~gI~via~spl~~-G~Lt~ 232 (346)
T PRK09912 154 AHAVQSGKALYVGISSYSPERTQKMVELLREWKIPLLIHQPSYNLLNRWVDKSGLLDTLQNNGVGCIAFTPLAQ-GLLTG 232 (346)
T ss_pred HHHHHcCCeeEEEecCCCHHHHHHHHHHHHhcCCCcEEeeccCCceecccchhhHHHHHHHcCceEEEehhhcC-ccccC
Confidence 9999999999999999999988766553 346788999999999975 4699999999999999999987 66554
Q ss_pred ccc----------------------cCC------chHHHHHHHHhCCCHHHHHHHHHhhcC--CeeecCCCCHHHHHHhh
Q 021264 218 KSD----------------------VLR------HPVLKTAAEKLGKTPAQVALRWGLQMG--HSVLPKSTNEARIKENF 267 (315)
Q Consensus 218 ~~~----------------------~~~------~~~l~~la~~~~~s~aq~al~~~l~~~--~~~i~G~~~~~~l~~nl 267 (315)
+.. .+. .+.+.++|+++|+|++|+||+|++++| .++|+|+++++||++|+
T Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~g~t~aq~AL~w~l~~~~v~~~i~G~~~~~ql~en~ 312 (346)
T PRK09912 233 KYLNGIPQDSRMHREGNKVRGLTPKMLTEANLNSLRLLNEMAQQRGQSMAQMALSWLLKDERVTSVLIGASRAEQLEENV 312 (346)
T ss_pred CCCCCCCCCccccccccchhhhchhhccHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHhCCCCeEEEeCCCCHHHHHHHH
Confidence 310 000 146788999999999999999999998 67899999999999999
Q ss_pred cccC-cccCHHHHHHHHhchh
Q 021264 268 DIFD-WSISEDLFVKFSEIEQ 287 (315)
Q Consensus 268 ~a~~-~~Lt~e~~~~l~~~~~ 287 (315)
+++. ++|++++++.|+++.+
T Consensus 313 ~a~~~~~L~~e~~~~l~~~~~ 333 (346)
T PRK09912 313 QALNNLTFSTEELAQIDQHIA 333 (346)
T ss_pred hhhcCCCCCHHHHHHHHHhhC
Confidence 9985 7999999999998754
No 8
>TIGR01293 Kv_beta voltage-dependent potassium channel beta subunit, animal. Plant beta subunits and their closely related bacterial homologs (in Deinococcus radiudurans, Xylella fastidiosa, etc.) appear more closely related to each other than to animal forms. However, the bacterial species lack convincing counterparts the Kv alpha subunit and the Kv beta homolog may serve as an enzyme. Cutoffs are set for this model such that yeast and plant forms and bacterial close homologs score between trusted and noise cutoffs.
Probab=100.00 E-value=3.1e-55 Score=401.78 Aligned_cols=260 Identities=29% Similarity=0.456 Sum_probs=225.3
Q ss_pred eeEc-CCCCccCccccccCc-----CCcchHHHHHHHHHHhCCcEEecCCCCC---CHHHHHHHHHHhhhcCCcCCCCeE
Q 021264 7 YFEL-NTGAKMPSVGLGTWQ-----ADPGIVGNAVDVAIKAGYRHIDCARLYL---NEKEIGFVLKKLFEDGVVKREDLW 77 (315)
Q Consensus 7 ~~~l-~tg~~vs~lglG~~~-----~~~~~~~~~l~~A~~~Gi~~~DtA~~Yg---se~~lG~~l~~~~~~~~~~R~~~~ 77 (315)
||+| +||++||+||||||+ .+.+++.++|+.|++.|||+||||++|| ||+++|++|+.. + ++|++++
T Consensus 1 ~r~lg~tg~~vs~lglGt~~~~g~~~~~~~a~~~l~~al~~Gi~~~DTA~~Yg~g~sE~~lG~~l~~~---~-~~R~~~~ 76 (317)
T TIGR01293 1 YRNLGKSGLRVSCLGLGTWVTFGGQISDEMAEQLLTLAYENGINLFDTAEVYAAGKAEVVLGNILKKK---G-WRRSSYV 76 (317)
T ss_pred CcccCCCCCeecceeecCCccCCCCCCHHHHHHHHHHHHHcCCCeEECccccCCCccHHHHHHHHHhc---C-CCcccEE
Confidence 5788 899999999999985 4667899999999999999999999998 799999999863 2 3699999
Q ss_pred EeeccCCC-------CCCCCcHHHHHHHHHHhcCCCccceEeeecCCCccCCCCCCCCCCCCCCCHHHHHHHHHHHHhcC
Q 021264 78 ITSKLWCT-------DLAPKDVPEALDNTLQDLQIDYVDLYLIHWPARMKKGSVGFNPENLLPLDIPSTWRAMEALYDSG 150 (315)
Q Consensus 78 i~tK~~~~-------~~~~~~i~~~ve~sL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~L~~lk~~G 150 (315)
|+||++.. +.+++.+++++++||++||+||||+|++|||+.. .+.+++|++|++|+++|
T Consensus 77 iaTK~~~~~~~~~~~~~~~~~i~~~~~~SL~rL~td~iDl~~lH~~~~~--------------~~~~e~~~aL~~l~~~G 142 (317)
T TIGR01293 77 ITTKIFWGGKAETERGLSRKHIIEGLKASLERLQLEYVDIVFANRPDPN--------------TPMEETVRAMTYVINQG 142 (317)
T ss_pred EEeeeccCCCCCCCCCCCHHHHHHHHHHHHHHhCCCcEeEEEeccCCCC--------------CCHHHHHHHHHHHHHcC
Confidence 99998432 3467899999999999999999999999999763 56789999999999999
Q ss_pred CeeeEeecCCChhhHHHHHHhcC----CCCcccccccCcccch---HHHHHHHHHcCceEEEecCCCCCCCCCCcccc--
Q 021264 151 KARAIGVCNFSTKKLGDLLEIAR----VPPAVNQVECHSSWQQ---QKLHAFCKSKGVHLSGYSPLGSPGTRWIKSDV-- 221 (315)
Q Consensus 151 kIr~iGvS~~~~~~l~~~~~~~~----~~~~~~q~~~n~~~~~---~~~~~~~~~~gi~v~~~~pl~~gg~~~~~~~~-- 221 (315)
|||+||+|||+.++++++..... ++++++|++||+++++ .+++++|+++||++++|+||++ |+++++...
T Consensus 143 ~ir~iGvSn~~~~~l~~~~~~~~~~~~~~~~~~Q~~~~l~~r~~~e~~l~~~~~~~gi~v~a~spl~~-G~Ltg~~~~~~ 221 (317)
T TIGR01293 143 MAMYWGTSRWSSMEIMEAYSVARQFNLIPPICEQAEYHMFQREKVEVQLPELYHKIGVGAMTWSPLAC-GLVSGKYDSGI 221 (317)
T ss_pred CeeEEEecCCCHHHHHHHHHHHHHcCCCCcceeccccChHhcchhHHHHHHHHHHcCCeEEEeccccc-cccCCCCCCCC
Confidence 99999999999999887765432 5788999999999986 3689999999999999999977 555543100
Q ss_pred ----------C---C--------------chHHHHHHHHhCCCHHHHHHHHHhhcC--CeeecCCCCHHHHHHhhcccCc
Q 021264 222 ----------L---R--------------HPVLKTAAEKLGKTPAQVALRWGLQMG--HSVLPKSTNEARIKENFDIFDW 272 (315)
Q Consensus 222 ----------~---~--------------~~~l~~la~~~~~s~aq~al~~~l~~~--~~~i~G~~~~~~l~~nl~a~~~ 272 (315)
+ . .+.+.++|+++|+|++|+|++|++++| +++|+|+++++|+++|+++++.
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ia~~~g~s~aqlal~w~l~~~~v~~~i~G~~~~~ql~en~~a~~~ 301 (317)
T TIGR01293 222 PPYSRATLKGYQWLKDKILSEEGRRQQARLKDLQAIAERLGCTLPQLAIAWCLRNEGVSSVLLGASSAEQLMENLGSLQV 301 (317)
T ss_pred CCcccccccccchhhhhhcchhhHHHHHHHHHHHHHHHHHCcCHHHHHHHHHhcCCCCeEEEeCCCCHHHHHHHHHHhhc
Confidence 0 0 146888999999999999999999997 4789999999999999999997
Q ss_pred --ccCHHHHHHHHhc
Q 021264 273 --SISEDLFVKFSEI 285 (315)
Q Consensus 273 --~Lt~e~~~~l~~~ 285 (315)
+||+++++.|+++
T Consensus 302 ~~~Ls~e~~~~l~~~ 316 (317)
T TIGR01293 302 LPKLSSSIIHEIDSI 316 (317)
T ss_pred cCCCCHHHHHHHHhh
Confidence 9999999999875
No 9
>PRK10625 tas putative aldo-keto reductase; Provisional
Probab=100.00 E-value=7.5e-55 Score=403.87 Aligned_cols=276 Identities=28% Similarity=0.373 Sum_probs=229.6
Q ss_pred CCeeEc-CCCCccCccccccCcC----CcchHHHHHHHHHHhCCcEEecCCCCC----------CHHHHHHHHHHhhhcC
Q 021264 5 NGYFEL-NTGAKMPSVGLGTWQA----DPGIVGNAVDVAIKAGYRHIDCARLYL----------NEKEIGFVLKKLFEDG 69 (315)
Q Consensus 5 m~~~~l-~tg~~vs~lglG~~~~----~~~~~~~~l~~A~~~Gi~~~DtA~~Yg----------se~~lG~~l~~~~~~~ 69 (315)
|+||.| +||+.||+||||||+. +.+++.++|+.|++.|||+||||+.|| ||..+|++|+.. +
T Consensus 1 m~~r~lg~t~~~vs~iglGt~~~g~~~~~~~a~~~l~~al~~Gi~~~DTA~~Yg~~~~~~~~g~sE~~iG~aL~~~---~ 77 (346)
T PRK10625 1 MQYHRIPHSSLEVSTLGLGTMTFGEQNSEADAHAQLDYAVAQGINLIDVAEMYPVPPRPETQGLTETYIGNWLAKR---G 77 (346)
T ss_pred CCceecCCCCCccccEeEeccccCCCCCHHHHHHHHHHHHHcCCCEEECccccCCCcCCCCCCchHHHHHHHHhhc---C
Confidence 789999 9999999999999974 467899999999999999999999996 899999999863 2
Q ss_pred CcCCCCeEEeeccCCC------------CCCCCcHHHHHHHHHHhcCCCccceEeeecCCCccC----CCCCCCCCCCCC
Q 021264 70 VVKREDLWITSKLWCT------------DLAPKDVPEALDNTLQDLQIDYVDLYLIHWPARMKK----GSVGFNPENLLP 133 (315)
Q Consensus 70 ~~~R~~~~i~tK~~~~------------~~~~~~i~~~ve~sL~~Lg~d~iDl~~lH~p~~~~~----~~~~~~~~~~~~ 133 (315)
+|++++|+||++.. +.+++.+++++++||++||+||||+|++|||+.... ..+....++ ..
T Consensus 78 --~R~~v~i~TK~~~~~~~~~~~~~~~~~~s~~~i~~~~e~SL~rL~~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~-~~ 154 (346)
T PRK10625 78 --SREKLIIASKVSGPSRNNDKGIRPNQALDRKNIREALHDSLKRLQTDYLDLYQVHWPQRPTNCFGKLGYSWTDSA-PA 154 (346)
T ss_pred --CcceEEEEcccccCCcCCCCCcCCCCCCCHHHHHHHHHHHHHHhCCCeEeEEEeeccCccccccccccccccccc-CC
Confidence 59999999998531 346789999999999999999999999999975210 000000000 01
Q ss_pred CCHHHHHHHHHHHHhcCCeeeEeecCCChhhHHHHHHhc---C-CCCcccccccCcccch--HHHHHHHHHcCceEEEec
Q 021264 134 LDIPSTWRAMEALYDSGKARAIGVCNFSTKKLGDLLEIA---R-VPPAVNQVECHSSWQQ--QKLHAFCKSKGVHLSGYS 207 (315)
Q Consensus 134 ~~~~~~~~~L~~lk~~GkIr~iGvS~~~~~~l~~~~~~~---~-~~~~~~q~~~n~~~~~--~~~~~~~~~~gi~v~~~~ 207 (315)
.+..++|++|++|+++||||+||+|||+.+++.+++... . ..+.++|++||+++++ .+++++|+++||++++|+
T Consensus 155 ~~~~e~~~aL~~l~~~GkIr~iGvSn~~~~~l~~~~~~~~~~~~~~~~~~q~~y~l~~r~~~~~ll~~~~~~gi~via~s 234 (346)
T PRK10625 155 VSLLETLDALAEQQRAGKIRYIGVSNETAFGVMRYLHLAEKHDLPRIVTIQNPYSLLNRSFEVGLAEVSQYEGVELLAYS 234 (346)
T ss_pred CCHHHHHHHHHHHHHCCCeEEEEecCCCHHHHHHHHHHHHHcCCCCcEEecCCCCcccccchhHHHHHHHHcCCeEEEec
Confidence 457899999999999999999999999999988776532 2 3578899999999876 579999999999999999
Q ss_pred CCCCCCCCCCcc-----------ccCC-------------chHHHHHHHHhCCCHHHHHHHHHhhcC--CeeecCCCCHH
Q 021264 208 PLGSPGTRWIKS-----------DVLR-------------HPVLKTAAEKLGKTPAQVALRWGLQMG--HSVLPKSTNEA 261 (315)
Q Consensus 208 pl~~gg~~~~~~-----------~~~~-------------~~~l~~la~~~~~s~aq~al~~~l~~~--~~~i~G~~~~~ 261 (315)
||++ |+++++. ..+. .+.+.++|+++|+|++|+||+|++++| .++|+|+++++
T Consensus 235 pL~~-G~Ltg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~~g~t~aqval~w~l~~~~v~~~I~G~~~~~ 313 (346)
T PRK10625 235 CLAF-GTLTGKYLNGAKPAGARNTLFSRFTRYSGEQTQKAVAAYVDIAKRHGLDPAQMALAFVRRQPFVASTLLGATTME 313 (346)
T ss_pred cccC-eeccCCCCCCCCCCCcccccccccccccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHhCCCCeeEEeCCCCHH
Confidence 9987 5554421 0011 246889999999999999999999998 36899999999
Q ss_pred HHHHhhcccCcccCHHHHHHHHhchh
Q 021264 262 RIKENFDIFDWSISEDLFVKFSEIEQ 287 (315)
Q Consensus 262 ~l~~nl~a~~~~Lt~e~~~~l~~~~~ 287 (315)
||++|+++++++||+++++.|+++..
T Consensus 314 ~l~en~~a~~~~L~~~~~~~l~~~~~ 339 (346)
T PRK10625 314 QLKTNIESLHLTLSEEVLAEIEAVHQ 339 (346)
T ss_pred HHHHHHhhccCCCCHHHHHHHHHHHh
Confidence 99999999999999999999999854
No 10
>cd06660 Aldo_ket_red Aldo-keto reductases (AKRs) are a superfamily of soluble NAD(P)(H) oxidoreductases whose chief purpose is to reduce aldehydes and ketones to primary and secondary alcohols. AKRs are present in all phyla and are of importance to both health and industrial applications. Members have very distinct functions and include the prokaryotic 2,5-diketo-D-gluconic acid reductases and beta-keto ester reductases, the eukaryotic aldose reductases, aldehyde reductases, hydroxysteroid dehydrogenases, steroid 5beta-reductases, potassium channel beta-subunits and aflatoxin aldehyde reductases, among others.
Probab=100.00 E-value=1.9e-53 Score=384.74 Aligned_cols=260 Identities=41% Similarity=0.640 Sum_probs=231.4
Q ss_pred eeEc-CCCCccCccccccCcCC-----cchHHHHHHHHHHhCCcEEecCCCCC---CHHHHHHHHHHhhhcCCcCCCCeE
Q 021264 7 YFEL-NTGAKMPSVGLGTWQAD-----PGIVGNAVDVAIKAGYRHIDCARLYL---NEKEIGFVLKKLFEDGVVKREDLW 77 (315)
Q Consensus 7 ~~~l-~tg~~vs~lglG~~~~~-----~~~~~~~l~~A~~~Gi~~~DtA~~Yg---se~~lG~~l~~~~~~~~~~R~~~~ 77 (315)
|++| +||+.||+||||||... .+++.++++.|++.|||+||||+.|| +|+.+|++|+.. + .|++++
T Consensus 1 ~r~lg~tg~~vs~lg~G~~~~~~~~~~~~~~~~~l~~A~~~Gi~~iDTA~~Yg~g~sE~~lG~al~~~---~--~R~~~~ 75 (285)
T cd06660 1 YRTLGKTGLKVSRLGLGTWQLGGGYVDEEEAAAAVRAALDAGINFIDTADVYGDGESEELLGEALKER---G--PREEVF 75 (285)
T ss_pred CcccCCCCceecCcceeccccCCCCCCHHHHHHHHHHHHHcCCCeEECccccCCCCCHHHHHHHHhcc---C--CcCcEE
Confidence 5788 69999999999998753 47899999999999999999999999 899999999985 1 499999
Q ss_pred EeeccCCCC-----CCCCcHHHHHHHHHHhcCCCccceEeeecCCCccCCCCCCCCCCCCCCCHHHHHHHHHHHHhcCCe
Q 021264 78 ITSKLWCTD-----LAPKDVPEALDNTLQDLQIDYVDLYLIHWPARMKKGSVGFNPENLLPLDIPSTWRAMEALYDSGKA 152 (315)
Q Consensus 78 i~tK~~~~~-----~~~~~i~~~ve~sL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~L~~lk~~GkI 152 (315)
|+||++... .+++.+++++++||++||++|||+|+||+|+... ....++|++|+++|++|+|
T Consensus 76 i~tK~~~~~~~~~~~~~~~~~~~l~~sL~~L~~~~iDl~~lh~~~~~~-------------~~~~~~~~~l~~l~~~G~i 142 (285)
T cd06660 76 IATKVGPRPGDGRDLSPEHIRRAVEESLKRLGTDYIDLYLLHWPDPDT-------------PDIEETLRALEELVKEGKI 142 (285)
T ss_pred EEeeecCCCCCCCCCCHHHHHHHHHHHHHHhCCCceeEEEecCCCCCC-------------CCHHHHHHHHHHHHHcCCc
Confidence 999998653 5789999999999999999999999999997742 2378999999999999999
Q ss_pred eeEeecCCChhhHHHHHHhcCCCCcccccccCcccchH--HHHHHHHHcCceEEEecCCCCCCCCCCccccC-------C
Q 021264 153 RAIGVCNFSTKKLGDLLEIARVPPAVNQVECHSSWQQQ--KLHAFCKSKGVHLSGYSPLGSPGTRWIKSDVL-------R 223 (315)
Q Consensus 153 r~iGvS~~~~~~l~~~~~~~~~~~~~~q~~~n~~~~~~--~~~~~~~~~gi~v~~~~pl~~gg~~~~~~~~~-------~ 223 (315)
|+||+|||+++.+.+++.....+|+++|++||++++.. +++++|+++||++++|+||++ |.+....... .
T Consensus 143 r~iGvS~~~~~~l~~~~~~~~~~~~~~q~~~n~~~~~~~~~~~~~~~~~gi~v~~~~~l~~-g~l~~~~~~~~~~~~~~~ 221 (285)
T cd06660 143 RAIGVSNFSAEQLEEALAAAGVPPAVNQVEYNLLDRQAEEELLPYCREHGIGVIAYSPLAG-GLLTGKYLPGAPPPEGDL 221 (285)
T ss_pred cEEEeeCCCHHHHHHHHHhhCCCceEEecccCcccCchHHHHHHHHHHcCcEEEEeccccC-ceecCCCCCCCCCChhhH
Confidence 99999999999999999887788999999999999985 499999999999999999987 5444332211 1
Q ss_pred chHHHHHHHHhCCCHHHHHHHHHhhcC--CeeecCCCCHHHHHHhhcccCcccCHHHHHHHHhc
Q 021264 224 HPVLKTAAEKLGKTPAQVALRWGLQMG--HSVLPKSTNEARIKENFDIFDWSISEDLFVKFSEI 285 (315)
Q Consensus 224 ~~~l~~la~~~~~s~aq~al~~~l~~~--~~~i~G~~~~~~l~~nl~a~~~~Lt~e~~~~l~~~ 285 (315)
.+.+..++.+++.+++|+|++|++++| .++|+|+++++|+++|+++...+||+++++.|+++
T Consensus 222 ~~~~~~~~~~~~~s~~q~al~~~l~~p~~~~~i~g~~~~~~l~~n~~~~~~~L~~~~~~~l~~~ 285 (285)
T cd06660 222 LEALKEIAEKHGVTPAQVALRWLLQQPGVTSVIPGASSPERLEENLAALDFELSDEDLAALDAL 285 (285)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHhcCCCCeEEEeCCCCHHHHHHHHhhccCCCCHHHHHHHhhC
Confidence 356889999999999999999999996 78899999999999999999999999999999863
No 11
>PRK10376 putative oxidoreductase; Provisional
Probab=100.00 E-value=7e-53 Score=381.55 Aligned_cols=261 Identities=23% Similarity=0.339 Sum_probs=223.7
Q ss_pred CCCCCCee--EcCCCCccCccccccCcC----------CcchHHHHHHHHHHhCCcEEecCCCCC---CHHHHHHHHHHh
Q 021264 1 MANENGYF--ELNTGAKMPSVGLGTWQA----------DPGIVGNAVDVAIKAGYRHIDCARLYL---NEKEIGFVLKKL 65 (315)
Q Consensus 1 ~~~~m~~~--~l~tg~~vs~lglG~~~~----------~~~~~~~~l~~A~~~Gi~~~DtA~~Yg---se~~lG~~l~~~ 65 (315)
|++.|... +|+ |++||+||||||+. +.+++.++|+.|++.|||+||||+.|| +|+.+|++++.
T Consensus 1 ~~~~~~~~~~~l~-g~~vs~iglG~~~lg~~~~~g~~~~~~~~~~~l~~A~~~Gin~~DTA~~Yg~~~sE~~lg~~l~~- 78 (290)
T PRK10376 1 MSTIMSSGTFTLG-GRSVNRLGYGAMQLAGPGVFGPPKDRDAAIAVLREAVALGVNHIDTSDFYGPHVTNQLIREALHP- 78 (290)
T ss_pred CcccccCCceecC-CeeecccceeccccCCCCcCCCCCCHHHHHHHHHHHHHcCCCeEEChhhcCCCcHHHHHHHHHhc-
Confidence 67777543 445 99999999999874 346789999999999999999999998 58999999964
Q ss_pred hhcCCcCCCCeEEeeccCC---------CCCCCCcHHHHHHHHHHhcCCCccceEeeecCCCccCCCCCCCCCCCCCCCH
Q 021264 66 FEDGVVKREDLWITSKLWC---------TDLAPKDVPEALDNTLQDLQIDYVDLYLIHWPARMKKGSVGFNPENLLPLDI 136 (315)
Q Consensus 66 ~~~~~~~R~~~~i~tK~~~---------~~~~~~~i~~~ve~sL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~ 136 (315)
.|++++|+||++. .+.+++.+++++++||++||+||||+|++|++...+.. + ....
T Consensus 79 ------~R~~~~i~TK~g~~~~~~~~~~~~~~~~~i~~~~e~SL~rL~td~iDl~~~H~~~~~h~p-------~--~~~~ 143 (290)
T PRK10376 79 ------YPDDLTIVTKVGARRGEDGSWLPAFSPAELRRAVHDNLRNLGLDVLDVVNLRLMGDGHGP-------A--EGSI 143 (290)
T ss_pred ------CCCeEEEEeeecccCCCCCccCCCCCHHHHHHHHHHHHHHhCCCeEEEEEEeccCCCCCC-------C--CCCH
Confidence 4999999999843 24567889999999999999999999999986321100 0 0357
Q ss_pred HHHHHHHHHHHhcCCeeeEeecCCChhhHHHHHHhcCCCCcccccccCcccch-HHHHHHHHHcCceEEEecCCCCCCCC
Q 021264 137 PSTWRAMEALYDSGKARAIGVCNFSTKKLGDLLEIARVPPAVNQVECHSSWQQ-QKLHAFCKSKGVHLSGYSPLGSPGTR 215 (315)
Q Consensus 137 ~~~~~~L~~lk~~GkIr~iGvS~~~~~~l~~~~~~~~~~~~~~q~~~n~~~~~-~~~~~~~~~~gi~v~~~~pl~~gg~~ 215 (315)
.++|++|++|+++||||+||||||+++++.++.+.. +++++|++||++++. .+++++|+++||++++|+||++ +
T Consensus 144 ~~~~~~l~~l~~~Gkir~iGvSn~~~~~l~~~~~~~--~~~~~q~~~~~~~~~~~~~~~~~~~~gi~v~a~~pL~g-~-- 218 (290)
T PRK10376 144 EEPLTVLAELQRQGLVRHIGLSNVTPTQVAEARKIA--EIVCVQNHYNLAHRADDALIDALARDGIAYVPFFPLGG-F-- 218 (290)
T ss_pred HHHHHHHHHHHHCCceeEEEecCCCHHHHHHHHhhC--CeEEEecccCCCcCChHHHHHHHHHcCCEEEEeecCCC-C--
Confidence 789999999999999999999999999999988764 568999999999876 6799999999999999999963 3
Q ss_pred CCccccCCchHHHHHHHHhCCCHHHHHHHHHhhcC--CeeecCCCCHHHHHHhhcccCcccCHHHHHHHHhchh
Q 021264 216 WIKSDVLRHPVLKTAAEKLGKTPAQVALRWGLQMG--HSVLPKSTNEARIKENFDIFDWSISEDLFVKFSEIEQ 287 (315)
Q Consensus 216 ~~~~~~~~~~~l~~la~~~~~s~aq~al~~~l~~~--~~~i~G~~~~~~l~~nl~a~~~~Lt~e~~~~l~~~~~ 287 (315)
.....+.+.++|+++|+|++|+|++|+++++ +++|+|+++++|+++|+++++++|++++++.|+++.+
T Consensus 219 ----~~~~~~~l~~ia~~~~~t~aq~al~w~l~~~~~~~~i~G~~~~~~l~en~~a~~~~L~~e~~~~l~~~~~ 288 (290)
T PRK10376 219 ----TPLQSSTLSDVAASLGATPMQVALAWLLQRSPNILLIPGTSSVAHLRENLAAAELVLSEEVLAELDGIAR 288 (290)
T ss_pred ----ChhhhHHHHHHHHHhCCCHHHHHHHHHHhCCCCeeEeeCCCCHHHHHHHHhhccCCCCHHHHHHHHHHHh
Confidence 1223578999999999999999999999874 6789999999999999999999999999999998754
No 12
>PLN02587 L-galactose dehydrogenase
Probab=100.00 E-value=1.1e-52 Score=384.71 Aligned_cols=265 Identities=26% Similarity=0.314 Sum_probs=222.6
Q ss_pred eeEc-CCCCccCccccccCc-------CCcchHHHHHHHHHHhCCcEEecCCCCC---CHHHHHHHHHHhhhcCCcCCCC
Q 021264 7 YFEL-NTGAKMPSVGLGTWQ-------ADPGIVGNAVDVAIKAGYRHIDCARLYL---NEKEIGFVLKKLFEDGVVKRED 75 (315)
Q Consensus 7 ~~~l-~tg~~vs~lglG~~~-------~~~~~~~~~l~~A~~~Gi~~~DtA~~Yg---se~~lG~~l~~~~~~~~~~R~~ 75 (315)
||+| +||++||.||||||+ .+.+++.++|+.|++.|||+||||+.|| +|..+|++|+.. + ++|++
T Consensus 1 ~r~lg~t~~~vs~lglG~~~~g~~~~~~~~~~~~~~l~~A~~~Gin~~DTA~~Yg~g~sE~~lG~al~~~---~-~~R~~ 76 (314)
T PLN02587 1 LRELGSTGLKVSSVGFGASPLGSVFGPVSEEDAIASVREAFRLGINFFDTSPYYGGTLSEKVLGKALKAL---G-IPREK 76 (314)
T ss_pred CCcCCCCCCcccCcccccccccCCCCCCCHHHHHHHHHHHHHcCCCEEECcCccCCCchHHHHHHHHHhC---C-CCcce
Confidence 6889 899999999999985 3567899999999999999999999997 699999999874 2 36999
Q ss_pred eEEeeccCCC----CCCCCcHHHHHHHHHHhcCCCccceEeeecCCCccCCCCCCCCCCCCCCCHHHHHHHHHHHHhcCC
Q 021264 76 LWITSKLWCT----DLAPKDVPEALDNTLQDLQIDYVDLYLIHWPARMKKGSVGFNPENLLPLDIPSTWRAMEALYDSGK 151 (315)
Q Consensus 76 ~~i~tK~~~~----~~~~~~i~~~ve~sL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~L~~lk~~Gk 151 (315)
++|+||++.. +.+++.+++++++||++||+||||+|+||+|+..... ....++|++|++|+++||
T Consensus 77 v~I~TK~~~~~~~~~~~~~~i~~~~e~SL~rL~~d~iDl~~lH~~~~~~~~-----------~~~~~~~~~l~~l~~~Gk 145 (314)
T PLN02587 77 YVVSTKCGRYGEGFDFSAERVTKSVDESLARLQLDYVDILHCHDIEFGSLD-----------QIVNETIPALQKLKESGK 145 (314)
T ss_pred EEEEeccccCCCCCCCCHHHHHHHHHHHHHHhCCCCeeEEEecCCCCcchh-----------hhHHHHHHHHHHHHHCCC
Confidence 9999999742 4578899999999999999999999999999742111 346789999999999999
Q ss_pred eeeEeecCCChhhHHHHHHhcC---CCCcccccccCcccch-HHHHHHHHHcCceEEEecCCCCCCCCCCccc-cC--C-
Q 021264 152 ARAIGVCNFSTKKLGDLLEIAR---VPPAVNQVECHSSWQQ-QKLHAFCKSKGVHLSGYSPLGSPGTRWIKSD-VL--R- 223 (315)
Q Consensus 152 Ir~iGvS~~~~~~l~~~~~~~~---~~~~~~q~~~n~~~~~-~~~~~~~~~~gi~v~~~~pl~~gg~~~~~~~-~~--~- 223 (315)
||+||+|||++++++.+.+... +.+..+|++||+.++. .+++++|+++||++++|+||++ |+++++.. .. .
T Consensus 146 ir~iGvSn~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ll~~~~~~gi~v~a~spl~~-G~L~~~~~~~~~~~~ 224 (314)
T PLN02587 146 VRFIGITGLPLAIFTYVLDRVPPGTVDVILSYCHYSLNDSSLEDLLPYLKSKGVGVISASPLAM-GLLTENGPPEWHPAP 224 (314)
T ss_pred eEEEEecCCCHHHHHHHHHhhhcCCCCeEEeccccCcchhhHHHHHHHHHHcCceEEEechhhc-cccCCCCCCCCCCCC
Confidence 9999999999998877765422 2344567888887764 5899999999999999999987 66654311 11 1
Q ss_pred ------chHHHHHHHHhCCCHHHHHHHHHhhcC--CeeecCCCCHHHHHHhhcccC----cccCHHHHHHHHhchh
Q 021264 224 ------HPVLKTAAEKLGKTPAQVALRWGLQMG--HSVLPKSTNEARIKENFDIFD----WSISEDLFVKFSEIEQ 287 (315)
Q Consensus 224 ------~~~l~~la~~~~~s~aq~al~~~l~~~--~~~i~G~~~~~~l~~nl~a~~----~~Lt~e~~~~l~~~~~ 287 (315)
.+.++++|+++++|++|+||+|++++| .++|+|+++++|+++|+++++ .+|+++++++|+++..
T Consensus 225 ~~~~~~~~~l~~~a~~~~~s~aq~al~~~l~~~~v~~~i~G~~~~~~l~~nl~a~~~~~~~~l~~~~~~~l~~~~~ 300 (314)
T PLN02587 225 PELKSACAAAATHCKEKGKNISKLALQYSLSNKDISTTLVGMNSVQQVEENVAAATELETSGIDEELLSEVEAILA 300 (314)
T ss_pred HHHHHHHHHHHHHHHHhCCCHHHHHHHHHHhCCCCeeEEecCCCHHHHHHHHHHHhhcccCCCCHHHHHHHHHhhc
Confidence 134678999999999999999999998 478999999999999999976 3799999999998765
No 13
>PF00248 Aldo_ket_red: Aldo/keto reductase family; InterPro: IPR023210 The aldo-keto reductase family includes a number of related monomeric NADPH-dependent oxidoreductases, such as aldehyde reductase, aldose reductase, prostaglandin F synthase, xylose reductase, rho crystallin, and many others []. All possess a similar structure, with a beta-alpha-beta fold characteristic of nucleotide binding proteins []. The fold comprises a parallel beta-8/alpha-8-barrel, which contains a novel NADP-binding motif. The binding site is located in a large, deep, elliptical pocket in the C-terminal end of the beta sheet, the substrate being bound in an extended conformation. The hydrophobic nature of the pocket favours aromatic and apolar substrates over highly polar ones []. Binding of the NADPH coenzyme causes a massive conformational change, reorienting a loop, effectively locking the coenzyme in place. This binding is more similar to FAD- than to NAD(P)-binding oxidoreductases []. Some proteins of this entry contain a K+ ion channel beta chain regulatory domain; these are reported to have oxidoreductase activity []. This entry represents the NADP-dependent oxidoreductase domain found in these proteins.; PDB: 1C9W_A 4F40_B 1VBJ_A 1XGD_A 1X97_A 2ACS_A 1EF3_A 2ACU_A 1PWM_A 2NVD_A ....
Probab=100.00 E-value=4.7e-52 Score=375.22 Aligned_cols=250 Identities=34% Similarity=0.593 Sum_probs=213.1
Q ss_pred ccccccCc-----CCcchHHHHHHHHHHhCCcEEecCCCCC---CHHHHHHHHHHhhhcCCcCCCCeEEeecc-----CC
Q 021264 18 SVGLGTWQ-----ADPGIVGNAVDVAIKAGYRHIDCARLYL---NEKEIGFVLKKLFEDGVVKREDLWITSKL-----WC 84 (315)
Q Consensus 18 ~lglG~~~-----~~~~~~~~~l~~A~~~Gi~~~DtA~~Yg---se~~lG~~l~~~~~~~~~~R~~~~i~tK~-----~~ 84 (315)
+||||||+ .+.+++.++|+.|++.|||+||||+.|| +|+.+|++|++. ..+|++++|+||+ +.
T Consensus 1 ~l~lG~~~~~~~~~~~~~~~~~l~~a~~~Gin~~DtA~~Y~~g~sE~~lg~~l~~~----~~~r~~~~i~tK~~~~~~~~ 76 (283)
T PF00248_consen 1 PLGLGTWRLGGERVSEEEAEAILRRALEAGINFFDTADSYGNGRSERILGRALRKS----RVPRDDIFISTKVYGDGKPE 76 (283)
T ss_dssp SBEEECTTBTTTTSTHHHHHHHHHHHHHTT--EEEECGGGGGGTHHHHHHHHHHHT----SSTGGGSEEEEEEESSSSTG
T ss_pred CEEEEccccCCCCCCHHHHHHHHHHHHHcCCCeecccccccccccccccccccccc----cccccccccccccccccccc
Confidence 58999984 6778999999999999999999999993 899999999982 2589999999999 55
Q ss_pred CCCCCCcHHHHHHHHHHhcCCCccceEeeecCCCccCCCCCCCCCCCCCCC-HHHHHHHHHHHHhcCCeeeEeecCCChh
Q 021264 85 TDLAPKDVPEALDNTLQDLQIDYVDLYLIHWPARMKKGSVGFNPENLLPLD-IPSTWRAMEALYDSGKARAIGVCNFSTK 163 (315)
Q Consensus 85 ~~~~~~~i~~~ve~sL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~-~~~~~~~L~~lk~~GkIr~iGvS~~~~~ 163 (315)
...+++.+++++++||++||+||||+|++|+|+.. .. ..++|++|++|+++|+||+||||||+++
T Consensus 77 ~~~~~~~i~~~~~~sL~~L~~d~iDl~~lH~~~~~--------------~~~~~~~~~~l~~l~~~G~ir~iGvs~~~~~ 142 (283)
T PF00248_consen 77 PDYSPDSIRESLERSLERLGTDYIDLLLLHWPDPS--------------EDALEEVWEALEELKKEGKIRHIGVSNFSPE 142 (283)
T ss_dssp GGSSHHHHHHHHHHHHHHHTSSSEEEEEESSSSTT--------------SSHHHHHHHHHHHHHHTTSEEEEEEES--HH
T ss_pred ccccccccccccccccccccccchhcccccccccc--------------ccccchhhhhhhhcccccccccccccccccc
Confidence 67788999999999999999999999999999876 44 7899999999999999999999999999
Q ss_pred hHHHHHHhcCCCCcccccccCcccc--hHHHHHHHHHcCceEEEecCCCCCCCCCCccc--------------cCCchHH
Q 021264 164 KLGDLLEIARVPPAVNQVECHSSWQ--QQKLHAFCKSKGVHLSGYSPLGSPGTRWIKSD--------------VLRHPVL 227 (315)
Q Consensus 164 ~l~~~~~~~~~~~~~~q~~~n~~~~--~~~~~~~~~~~gi~v~~~~pl~~gg~~~~~~~--------------~~~~~~l 227 (315)
.++++.....++|+++|++||++.+ ..+++++|+++||++++|+|+++ |+++++.. ....+.+
T Consensus 143 ~l~~~~~~~~~~~~~~q~~~n~~~~~~~~~l~~~~~~~gi~v~a~~~l~~-G~l~~~~~~~~~~~~~~~~~~~~~~~~~l 221 (283)
T PF00248_consen 143 QLEAALKIGSIPPDVVQINYNLLNRREEEGLLEFCREHGIGVIAYSPLAG-GLLTGKYKSPPPPPSRASLRDAQELADAL 221 (283)
T ss_dssp HHHHHHTCTSS-ESEEEEE-BTTBHBGGHHHHHHHHHTT-EEEEESTTGG-GCGGTTTTTTTTSTTTSGSSTHGGGHHHH
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccc-CccccccccCCCcccccccchhhhhhhhh
Confidence 9999977777899999999999933 37899999999999999999987 44432211 1334689
Q ss_pred HHHHHHhCCCHHHHHHHHHhhcC--CeeecCCCCHHHHHHhhcccCcccCHHHHHHHHhch
Q 021264 228 KTAAEKLGKTPAQVALRWGLQMG--HSVLPKSTNEARIKENFDIFDWSISEDLFVKFSEIE 286 (315)
Q Consensus 228 ~~la~~~~~s~aq~al~~~l~~~--~~~i~G~~~~~~l~~nl~a~~~~Lt~e~~~~l~~~~ 286 (315)
.+++++++.|++|+|++|+++++ .++|+|+++++|+++|+++++++||+++++.|+++.
T Consensus 222 ~~~a~~~g~s~~q~al~~~l~~~~~~~~i~g~~~~~~l~en~~a~~~~L~~~~~~~i~~~~ 282 (283)
T PF00248_consen 222 RELAEEHGVSPAQLALRWVLSHPGVASVIVGASSPEHLEENLAALDFPLTEEELAEIDQIL 282 (283)
T ss_dssp HHHHHHHTSSHHHHHHHHHHTSHTTEEEEEB-SSHHHHHHHHGGSSSG--HHHHHHHHTTH
T ss_pred hhhhhhcccccchhhhhhhhhccccccccCCCCCHHHHHHHHHHhCCCCCHHHHHHHHhhh
Confidence 99999999999999999999765 799999999999999999999999999999999874
No 14
>COG1453 Predicted oxidoreductases of the aldo/keto reductase family [General function prediction only]
Probab=100.00 E-value=4.4e-51 Score=362.77 Aligned_cols=275 Identities=23% Similarity=0.305 Sum_probs=234.8
Q ss_pred CCeeEc-CCCCccCccccccCcC--------CcchHHHHHHHHHHhCCcEEecCCCC--C-CHHHHHHHHHHhhhcCCcC
Q 021264 5 NGYFEL-NTGAKMPSVGLGTWQA--------DPGIVGNAVDVAIKAGYRHIDCARLY--L-NEKEIGFVLKKLFEDGVVK 72 (315)
Q Consensus 5 m~~~~l-~tg~~vs~lglG~~~~--------~~~~~~~~l~~A~~~Gi~~~DtA~~Y--g-se~~lG~~l~~~~~~~~~~ 72 (315)
|.||++ +||.++|.+|||||+. +.+.+.++|+.|+++|||+||||..| | ||..+|++|++. .
T Consensus 1 Mlyr~~~k~g~~~s~lgfG~MRlp~~~~~~id~~~~~~~i~~aie~GiNyidTA~~Yh~g~sE~~lgkaL~~~------~ 74 (391)
T COG1453 1 MLYRKFPKTGDELSILGFGCMRLPLKEQGSIDEENANETIDYAIEHGINYIDTAWPYHGGESEEFLGKALKDG------Y 74 (391)
T ss_pred CchhhcCCCCcccceeccceeecccccCCCccHHHHHHHHHHHHHcCCceEeecccccCCCchHHHHHHhhhc------c
Confidence 889999 9999999999999973 56779999999999999999999999 7 899999999984 6
Q ss_pred CCCeEEeeccCCCC-CCCCcHHHHHHHHHHhcCCCccceEeeecCCCccCCCCCCCCCCCCCCCHHHHHHHHHHHHhcCC
Q 021264 73 REDLWITSKLWCTD-LAPKDVPEALDNTLQDLQIDYVDLYLIHWPARMKKGSVGFNPENLLPLDIPSTWRAMEALYDSGK 151 (315)
Q Consensus 73 R~~~~i~tK~~~~~-~~~~~i~~~ve~sL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~L~~lk~~Gk 151 (315)
|++|+++||+..+. .+.+.+++-++++|++||+||+|+|+||........ . ....++++.++++|++||
T Consensus 75 Rekv~LaTKlp~~~~~~~edm~r~fneqLekl~~Dy~D~yliH~l~~e~~~-k---------~~~~g~~df~~kak~eGk 144 (391)
T COG1453 75 REKVKLATKLPSWPVKDREDMERIFNEQLEKLGTDYIDYYLIHGLNTETWE-K---------IERLGVFDFLEKAKAEGK 144 (391)
T ss_pred cceEEEEeecCCccccCHHHHHHHHHHHHHHhCCchhhhhhhccccHHHHH-H---------HHccChHHHHHHHHhcCc
Confidence 99999999996432 457789999999999999999999999987662211 0 122347999999999999
Q ss_pred eeeEeecCCCh-hhHHHHHHhcCCCCcccccccCcccch----HHHHHHHHHcCceEEEecCCCCCCCCCCccccCCchH
Q 021264 152 ARAIGVCNFST-KKLGDLLEIARVPPAVNQVECHSSWQQ----QKLHAFCKSKGVHLSGYSPLGSPGTRWIKSDVLRHPV 226 (315)
Q Consensus 152 Ir~iGvS~~~~-~~l~~~~~~~~~~~~~~q~~~n~~~~~----~~~~~~~~~~gi~v~~~~pl~~gg~~~~~~~~~~~~~ 226 (315)
||++|+|.|++ +.+.+++.. .+++++|++||.+++. .+.+++|.++|++|+.++|+.+|+++.. -.++
T Consensus 145 Ir~~GFSfHgs~e~~~~iv~a--~~~dfvqlq~ny~d~~n~~~~~~l~~A~~~~~gI~IMeP~~gG~l~~~-----vP~~ 217 (391)
T COG1453 145 IRNAGFSFHGSTEVFKEIVDA--YPWDFVQLQYNYIDQKNQAGTEGLKYAASKGLGIFIMEPLDGGGLLYN-----VPEK 217 (391)
T ss_pred EEEeeecCCCCHHHHHHHHhc--CCcceEEeeeeeeccchhcccHHHHHHHhCCCcEEEEeeCCCCCcccC-----CCHH
Confidence 99999999974 555666665 4579999999999886 3789999999999999999988765431 2468
Q ss_pred HHHHHHHhC--CCHHHHHHHHHhhcC--CeeecCCCCHHHHHHhhcccCc--c-cCHHHHHHHHhchh------hhhccc
Q 021264 227 LKTAAEKLG--KTPAQVALRWGLQMG--HSVLPKSTNEARIKENFDIFDW--S-ISEDLFVKFSEIEQ------ARLIRG 293 (315)
Q Consensus 227 l~~la~~~~--~s~aq~al~~~l~~~--~~~i~G~~~~~~l~~nl~a~~~--~-Lt~e~~~~l~~~~~------~~~~~g 293 (315)
+.+++.+++ .||+.+|+||++++| +++++||++++|++|||..++. | ||++|.+.|.++.+ ...|++
T Consensus 218 ~~~l~~~~~~~~sP~~wa~R~~~shp~V~~vlsGm~~~~~l~enLk~~~~~~p~lte~e~~il~~v~~~~~~~~~v~Ct~ 297 (391)
T COG1453 218 LEELCRPASPKRSPAEWALRYLLSHPEVTTVLSGMNTPEQLEENLKIASELEPSLTEEELQILEKVEEIYRESLKVPCTG 297 (391)
T ss_pred HHHHHHhcCCCCCcHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHHHHhhcCCccCHHHHHHHHHHHHHHHHHhcCCCcc
Confidence 899999876 689999999999999 6888999999999999998874 4 99999999998876 233999
Q ss_pred cccccc-CCC
Q 021264 294 TAYVHD-TFG 302 (315)
Q Consensus 294 ~~~~~~-~~~ 302 (315)
|.||-+ |.|
T Consensus 298 C~yC~PCP~g 307 (391)
T COG1453 298 CRYCLPCPSG 307 (391)
T ss_pred ccccCcCCCC
Confidence 999999 776
No 15
>COG4989 Predicted oxidoreductase [General function prediction only]
Probab=100.00 E-value=1.7e-50 Score=341.19 Aligned_cols=264 Identities=24% Similarity=0.339 Sum_probs=238.9
Q ss_pred CCeeEc-CCCCccCccccccCc-----CCcchHHHHHHHHHHhCCcEEecCCCCC---CHHHHHHHHHHhhhcCCcCCCC
Q 021264 5 NGYFEL-NTGAKMPSVGLGTWQ-----ADPGIVGNAVDVAIKAGYRHIDCARLYL---NEKEIGFVLKKLFEDGVVKRED 75 (315)
Q Consensus 5 m~~~~l-~tg~~vs~lglG~~~-----~~~~~~~~~l~~A~~~Gi~~~DtA~~Yg---se~~lG~~l~~~~~~~~~~R~~ 75 (315)
|++.++ ..|+.+|++.+|+|+ ..+.++...++.|+|.|||+||-|+.|| +|+++|.+|+-. +--|++
T Consensus 1 m~rI~l~~~~~e~Sriv~G~wRl~d~~~~~~e~~~~Ie~~le~Gitt~DhADIYGgy~cE~~fg~aL~l~----p~lRek 76 (298)
T COG4989 1 MQRITLAPDGLEFSRIVLGYWRLNDWNMSARELLSFIETALELGITTFDHADIYGGYQCEALFGEALKLA----PGLREK 76 (298)
T ss_pred CceEEecCCCccHHHHHHHHHhhhhccCCHHHHHHHHHHHHHcCcccchhhhhcCCccHHHHHHHHHhcC----hhhhhh
Confidence 788999 699999999999986 5667899999999999999999999999 699999999763 236999
Q ss_pred eEEeeccCC------------CCCCCCcHHHHHHHHHHhcCCCccceEeeecCCCccCCCCCCCCCCCCCCCHHHHHHHH
Q 021264 76 LWITSKLWC------------TDLAPKDVPEALDNTLQDLQIDYVDLYLIHWPARMKKGSVGFNPENLLPLDIPSTWRAM 143 (315)
Q Consensus 76 ~~i~tK~~~------------~~~~~~~i~~~ve~sL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~L 143 (315)
+.|+||++. ++.+.++|..++|+||++|+|||+|+++||.||+. ++.+++.+++
T Consensus 77 ieivsKCGI~~~s~~~~~~~hydts~~HI~~SVe~SL~~L~tDylD~LLiHRPDpL--------------md~eeVAeAf 142 (298)
T COG4989 77 IEIVSKCGIRLPSREEPRIGHYDTSKEHIIKSVEQSLINLKTDYLDLLLIHRPDPL--------------MDAEEVAEAF 142 (298)
T ss_pred eEeeeccccccccccccccccccCcHHHHHHHHHHHHHHhccchhhhhhccCCccc--------------CCHHHHHHHH
Confidence 999999963 46788999999999999999999999999999997 8899999999
Q ss_pred HHHHhcCCeeeEeecCCChhhHHHHHHhcCCCCcccccccCcccch---HHHHHHHHHcCceEEEecCCCCCCCCCCccc
Q 021264 144 EALYDSGKARAIGVCNFSTKKLGDLLEIARVPPAVNQVECHSSWQQ---QKLHAFCKSKGVHLSGYSPLGSPGTRWIKSD 220 (315)
Q Consensus 144 ~~lk~~GkIr~iGvS~~~~~~l~~~~~~~~~~~~~~q~~~n~~~~~---~~~~~~~~~~gi~v~~~~pl~~gg~~~~~~~ 220 (315)
..|++.||||++|||||++.+++-+......+.+.||+++|+++.. +..+++|+.+.|.+++||||++|+++.+...
T Consensus 143 ~~L~~sGKVr~fGVSNf~p~Q~~LL~s~l~~~LvtNQlelS~~~~~~~~DGtLd~~q~~~v~pmaWSpl~gG~~F~g~~~ 222 (298)
T COG4989 143 THLHKSGKVRHFGVSNFNPAQFELLQSRLPFTLVTNQLELSPLHTPMLLDGTLDYCQQLRVRPMAWSPLGGGGLFLGDDK 222 (298)
T ss_pred HHHHhcCCeeeeecCCCCHHHHHHHHHhccchhhhcceeeccccccccccchHHHHHHcCCCcccccccCCCccccCCcc
Confidence 9999999999999999999999988888888899999999999987 6799999999999999999998877765222
Q ss_pred cC-CchHHHHHHHHhC-CCHHHHHHHHHhhcC--CeeecCCCCHHHHHHhhcccCcccCHHHHHHHHhch
Q 021264 221 VL-RHPVLKTAAEKLG-KTPAQVALRWGLQMG--HSVLPKSTNEARIKENFDIFDWSISEDLFVKFSEIE 286 (315)
Q Consensus 221 ~~-~~~~l~~la~~~~-~s~aq~al~~~l~~~--~~~i~G~~~~~~l~~nl~a~~~~Lt~e~~~~l~~~~ 286 (315)
.. -.+++..+|.++| .|..+++++|++.+| ..+|+|+.+++++++.+++.+..||.+++-+|-.+.
T Consensus 223 ~q~l~~~l~~ia~e~ga~s~~~VaiAWllR~Pa~~~PiiGt~~~eRi~~a~~Al~~~LtRqqWf~Iy~Aa 292 (298)
T COG4989 223 FQRLRKVLDRIAEEYGAVSITAVAIAWLLRHPAKPQPIIGTGNLERIRAAIKALSLTLTRQQWFEIYTAA 292 (298)
T ss_pred hHHHHHHHHHHHHHhCcccHHHHHHHHHHhCcCcccceecCCCHHHHHHHHHHhhccccHHHHHHHHHHh
Confidence 11 2468999999999 799999999999999 678999999999999999999999999998887654
No 16
>PRK14863 bifunctional regulator KidO; Provisional
Probab=100.00 E-value=9.4e-50 Score=360.66 Aligned_cols=248 Identities=17% Similarity=0.197 Sum_probs=207.6
Q ss_pred CCccCccccccCcC--------------CcchHHHHHHHHHHhCCcEEecCCCCC-CHHHHHHHHHHhhhcCCcCCCCeE
Q 021264 13 GAKMPSVGLGTWQA--------------DPGIVGNAVDVAIKAGYRHIDCARLYL-NEKEIGFVLKKLFEDGVVKREDLW 77 (315)
Q Consensus 13 g~~vs~lglG~~~~--------------~~~~~~~~l~~A~~~Gi~~~DtA~~Yg-se~~lG~~l~~~~~~~~~~R~~~~ 77 (315)
+++||+||||||++ +.+++.++|+.|++.|||+||||+.|| ||..+|++|+.. .+.+++
T Consensus 2 ~~~vs~iglGt~~~g~~~~~~~~~~~~~~~~ea~~~l~~A~~~Gin~~DTA~~YG~SE~~lG~al~~~------~~~~~~ 75 (292)
T PRK14863 2 SSPVSKLGLAAAQFGLDPGSSSAPRGRTPEAEARDILNIAARAGLSVLDASGLFGRAETVLGQLIPRP------VPFRVT 75 (292)
T ss_pred CCcceeeeeeeeccCCCcccccCCCCCCCHHHHHHHHHHHHHcCCCEEecchhhhhHHHHHhhhhccC------CceEee
Confidence 57899999999753 347799999999999999999999999 799999999741 356789
Q ss_pred EeeccCCCCCCCCcHHHHHHHHHHhcCCCccceEeeecCCCccCCCCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeeEee
Q 021264 78 ITSKLWCTDLAPKDVPEALDNTLQDLQIDYVDLYLIHWPARMKKGSVGFNPENLLPLDIPSTWRAMEALYDSGKARAIGV 157 (315)
Q Consensus 78 i~tK~~~~~~~~~~i~~~ve~sL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~L~~lk~~GkIr~iGv 157 (315)
++||. .+.+++.+++++++||++||+||||+|++|+|+.... ....++|++|++|+++||||+||+
T Consensus 76 i~tk~--~~~~~~~i~~~~e~SL~rLg~d~iDl~~lH~~~~~~~------------~~~~~~~~~l~~l~~~Gkir~iGv 141 (292)
T PRK14863 76 LSTVR--ADRGPDFVEAEARASLRRMGVERADAILVHSPTELFG------------PHGAALWERLQALKDQGLFAKIGV 141 (292)
T ss_pred ccccc--ccccHHHHHHHHHHHHHHhCCCccCeEEEeCchhhcC------------cchHHHHHHHHHHHHcCCcceEee
Confidence 99985 3456889999999999999999999999999875210 112578999999999999999999
Q ss_pred cCCChhhHHHHHHhcCCCCcccccccCcccch---HHHHHHHHHcCceEEEecCCCCCCCCCCccc----cCC-----ch
Q 021264 158 CNFSTKKLGDLLEIARVPPAVNQVECHSSWQQ---QKLHAFCKSKGVHLSGYSPLGSPGTRWIKSD----VLR-----HP 225 (315)
Q Consensus 158 S~~~~~~l~~~~~~~~~~~~~~q~~~n~~~~~---~~~~~~~~~~gi~v~~~~pl~~gg~~~~~~~----~~~-----~~ 225 (315)
|||+++++.++... .+|+++|++||+++++ .+++++|+++||++++|+||++| +++.... .+. ..
T Consensus 142 Sn~~~~~~~~~~~~--~~~~~~Q~~~n~l~~~~~~~~~l~~~~~~gi~v~a~spl~~G-~L~~~~~~~~~~~~~~~~~~~ 218 (292)
T PRK14863 142 SAHASDDPVGVARR--FKPDILQAPASLLDQRLLADGSLQRIAGMGVEVHLRSIFLNG-LLFLPPDRVPAQLKGASGRLS 218 (292)
T ss_pred eccCHHHHHHHHhc--CCCCEEEecCCcccccccccchHHHHHhCCCEEEEechhhCc-cccCCcccCccchhhhhHHHH
Confidence 99999998877543 5789999999999986 35999999999999999999884 4443211 111 13
Q ss_pred HHHHHHHHhCCCHHHHHHHHHhhcC--CeeecCCCCHHHHHHhhcccCcccCHHHHHHHH
Q 021264 226 VLKTAAEKLGKTPAQVALRWGLQMG--HSVLPKSTNEARIKENFDIFDWSISEDLFVKFS 283 (315)
Q Consensus 226 ~l~~la~~~~~s~aq~al~~~l~~~--~~~i~G~~~~~~l~~nl~a~~~~Lt~e~~~~l~ 283 (315)
.+.+++.+.++|++|+||+|++++| .++|+|+++++|+++|+++.+.+++++.+.+|.
T Consensus 219 ~~~~~~~~~~~s~aqlalaw~l~~p~v~~~I~G~~~~~ql~~n~~a~~~~~~~~~~~~l~ 278 (292)
T PRK14863 219 RVRRMIAEGRSDPLQAALGFALSRPEGSAVLVGVNSAAELSAVVAAASSPPPDLDWDDMA 278 (292)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHhCCCCCeEEEecCCHHHHHHHHHHHhcCCCccchhhcc
Confidence 4566777889999999999999988 578999999999999999999889988776654
No 17
>KOG1576 consensus Predicted oxidoreductase [Energy production and conversion]
Probab=100.00 E-value=6.9e-45 Score=309.37 Aligned_cols=267 Identities=23% Similarity=0.245 Sum_probs=221.6
Q ss_pred CCCeeEc-CCCCccCccccccCc-------CCcchHHHHHHHHHHhCCcEEecCCCCC---CHHHHHHHHHHhhhcCCcC
Q 021264 4 ENGYFEL-NTGAKMPSVGLGTWQ-------ADPGIVGNAVDVAIKAGYRHIDCARLYL---NEKEIGFVLKKLFEDGVVK 72 (315)
Q Consensus 4 ~m~~~~l-~tg~~vs~lglG~~~-------~~~~~~~~~l~~A~~~Gi~~~DtA~~Yg---se~~lG~~l~~~~~~~~~~ 72 (315)
+|+||.+ +||++||+||||+.. .+.++....+..|+..|||+|||||.|| ||+.+|.++++ +|
T Consensus 21 rmeyR~lg~tgl~VSk~~fGga~L~~~fgd~~~e~~i~tv~eA~k~GINyiDTsp~Ygqs~se~~lg~al~~------vP 94 (342)
T KOG1576|consen 21 RMEYRQLGSTGLRVSKLGFGGAALGQLFGDEDEEEGILTVIEAFKSGINYIDTSPYYGQSRSEEGLGLALKD------VP 94 (342)
T ss_pred HHHHhhcCCCcceeeeeeecchhhhhhcCCcchhhhHHHHHHHHHccccceecCcccCcchhHHHHHHHHhh------CC
Confidence 5899999 999999999999842 3566777777779999999999999999 79999999998 49
Q ss_pred CCCeEEeeccCC--------CCCCCCcHHHHHHHHHHhcCCCccceEeeecCCCccCCCCCCCCCCCCCCCHHHHHHHHH
Q 021264 73 REDLWITSKLWC--------TDLAPKDVPEALDNTLQDLQIDYVDLYLIHWPARMKKGSVGFNPENLLPLDIPSTWRAME 144 (315)
Q Consensus 73 R~~~~i~tK~~~--------~~~~~~~i~~~ve~sL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~L~ 144 (315)
|+..||+||++. .+++++.+++++++||+||++||+|++++|..+....- +..+.|++.+|+
T Consensus 95 R~aYyIaTKvgRy~ld~~~~FdfsadkvreSv~rSlerLqldyvDilqiHDvefap~l----------d~vl~Etlp~Le 164 (342)
T KOG1576|consen 95 REAYYIATKVGRYELDYANMFDFSADKVRESVKRSLERLQLDYVDILQIHDVEFAPNL----------DIVLNETLPALE 164 (342)
T ss_pred hhheeeeeeeeecccCccccccchHHHHHHHHHHHHHHhCCceeEEEEeecccccccc----------cHHHHHHHHHHH
Confidence 999999999964 46788999999999999999999999999988775211 166789999999
Q ss_pred HHHhcCCeeeEeecCCChhhHHHHHHhcCCCCcccc--cccCcccch-HHHHHHHHHcCceEEEecCCCCCCCCCCcccc
Q 021264 145 ALYDSGKARAIGVCNFSTKKLGDLLEIARVPPAVNQ--VECHSSWQQ-QKLHAFCKSKGVHLSGYSPLGSPGTRWIKSDV 221 (315)
Q Consensus 145 ~lk~~GkIr~iGvS~~~~~~l~~~~~~~~~~~~~~q--~~~n~~~~~-~~~~~~~~~~gi~v~~~~pl~~gg~~~~~~~~ 221 (315)
+||++||||+||++.+..+.+.++++......+++. .+|++.+.. -..++..+.+|++|+.-++++. |+++.+.+.
T Consensus 165 ~lk~~Gk~RfiGitgypldvl~~~ae~~~G~~dvvlsY~ry~l~d~tLl~~~~~~~sk~vgVi~Asalsm-gLLt~~gp~ 243 (342)
T KOG1576|consen 165 ELKQEGKIRFIGITGYPLDVLTECAERGKGRLDVVLSYCRYTLNDNTLLRYLKRLKSKGVGVINASALSM-GLLTNQGPP 243 (342)
T ss_pred HHHhcCceeEeeecccchHHHHHHHhcCCCceeeehhhhhhccccHHHHHHHHHHHhcCceEEehhhHHH-HHhhcCCCC
Confidence 999999999999999999999999987766666766 555554443 4567778899999999999988 777755443
Q ss_pred CC---ch-------HHHHHHHHhCCCHHHHHHHHHhhcC--CeeecCCCCHHHHHHhhcccCcccCHHHHHHHHhchh
Q 021264 222 LR---HP-------VLKTAAEKLGKTPAQVALRWGLQMG--HSVLPKSTNEARIKENFDIFDWSISEDLFVKFSEIEQ 287 (315)
Q Consensus 222 ~~---~~-------~l~~la~~~~~s~aq~al~~~l~~~--~~~i~G~~~~~~l~~nl~a~~~~Lt~e~~~~l~~~~~ 287 (315)
.. ++ .-.+.|++.|++.+.+|+.|.++.+ .++++|+++.++|+.|+++....||..+-+....+.+
T Consensus 244 ~wHPaS~Elk~~a~~aa~~Cq~rnv~l~kLA~~Yam~~~~~~~~lvGm~s~~~l~~nLdan~~~ls~~~~Qevl~~~r 321 (342)
T KOG1576|consen 244 PWHPASDELKEAAKAAAEYCQSRNVELGKLAMYYAMSLPGVSTVLVGMSSRQLLRINLDANFDRLSSKHEQEVLRILR 321 (342)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHcCccHHHHHHHHHHccCCcceEEecCchHHHHHHHHHhhhccccchhHHHHHHHHH
Confidence 22 23 3445677789999999999999987 6899999999999999997767888844444444444
No 18
>KOG3023 consensus Glutamate-cysteine ligase regulatory subunit [Amino acid transport and metabolism]
Probab=98.42 E-value=6.6e-07 Score=76.26 Aligned_cols=138 Identities=22% Similarity=0.282 Sum_probs=95.2
Q ss_pred CCCCeEEeeccCCCCCCCCcHHHHHHHHHHhcC----CCccceE------eeecCCCccC--------CCCCCCCCCCCC
Q 021264 72 KREDLWITSKLWCTDLAPKDVPEALDNTLQDLQ----IDYVDLY------LIHWPARMKK--------GSVGFNPENLLP 133 (315)
Q Consensus 72 ~R~~~~i~tK~~~~~~~~~~i~~~ve~sL~~Lg----~d~iDl~------~lH~p~~~~~--------~~~~~~~~~~~~ 133 (315)
.++++=+..|.+-.++.-+.++...+..++-+- +..+|.+ +.|--+-... .++.-+..+...
T Consensus 73 ~~~E~si~vklf~ndh~~e~in~~eeelmkVf~~lh~v~~id~~st~~v~~~~~~~l~v~~lssv~ia~~sied~~n~~~ 152 (285)
T KOG3023|consen 73 KQEEYSIIVKLFFNDHENEDINKREEELMKVFYNLHMVFGIDFVSTLVVSFPHITFLKVSGLSSVNIAYDSIEDIPNQEI 152 (285)
T ss_pred cccccceeeEEeecccchhhhcHHHHHHHHHHHHHHHHhhhhhhhhhhhhcccceeecccCccchhccCChhhhcchhhH
Confidence 466777777876656666666666666554432 1222222 1111000000 000001111222
Q ss_pred CCHHHHHHHHHHHHhcCCeeeEeecCCChhhHHHHHHhcCCCCcccccccCcccch-HHHHHHHHHcCceEEEecCC
Q 021264 134 LDIPSTWRAMEALYDSGKARAIGVCNFSTKKLGDLLEIARVPPAVNQVECHSSWQQ-QKLHAFCKSKGVHLSGYSPL 209 (315)
Q Consensus 134 ~~~~~~~~~L~~lk~~GkIr~iGvS~~~~~~l~~~~~~~~~~~~~~q~~~n~~~~~-~~~~~~~~~~gi~v~~~~pl 209 (315)
..+.+.|+.||+++.+|||..||+|.++..++++++..+.+.|.++|+++.-+..- +++.++|.+++|.+..++--
T Consensus 153 e~lkplwk~LE~lv~~~kI~~lGvSDfda~qLe~Li~saqVvP~snqVnL~~cCvvPpdLqafa~~hdiQLltHsDP 229 (285)
T KOG3023|consen 153 ESLKPLWKLLEELVGEGKIGTLGVSDFDANQLERLISSAQVVPESNQVNLGQCCVVPPDLQAFADRHDIQLLTHSDP 229 (285)
T ss_pred HHHHHHHHHHHHHhccCceeeeeecccCHHHHHHHHhhhccccccceeeccccccCCHHHHHHhhhcceeeeecCCc
Confidence 45678999999999999999999999999999999999999999999999877754 89999999999999998755
No 19
>PLN02489 homocysteine S-methyltransferase
Probab=92.10 E-value=9.9 Score=35.21 Aligned_cols=171 Identities=14% Similarity=0.092 Sum_probs=97.1
Q ss_pred CCCeEEeeccCCCC----------------CCCCcHHHHHHHHHHhcCCCccceEeeecCCCccCCCCCCCCCCCCCCCH
Q 021264 73 REDLWITSKLWCTD----------------LAPKDVPEALDNTLQDLQIDYVDLYLIHWPARMKKGSVGFNPENLLPLDI 136 (315)
Q Consensus 73 R~~~~i~tK~~~~~----------------~~~~~i~~~ve~sL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~ 136 (315)
+.+++|+.-+++.. .+.+.+.+.....++.|--..+|++.+-.. .+.
T Consensus 130 ~~~~~VaGsiGP~g~~l~~g~ey~g~y~~~~~~~e~~~~~~~qi~~l~~~gvD~i~~ET~-----------------~~l 192 (335)
T PLN02489 130 YRPILVAASIGSYGAYLADGSEYSGDYGPSVTLEKLKDFHRRRLQVLAEAGPDLIAFETI-----------------PNK 192 (335)
T ss_pred CCCcEEEEEcCCccccccCCcccCCCCccCCCHHHHHHHHHHHHHHHHhCCCCEEEEecc-----------------CCh
Confidence 34688888886522 223556666666677664456999998753 345
Q ss_pred HHHHHHHHHHHhcC--CeeeEeecCCC------hhhHHHHHHhcC--CCCcccccccCcccchHHHHHHHHHc-CceEEE
Q 021264 137 PSTWRAMEALYDSG--KARAIGVCNFS------TKKLGDLLEIAR--VPPAVNQVECHSSWQQQKLHAFCKSK-GVHLSG 205 (315)
Q Consensus 137 ~~~~~~L~~lk~~G--kIr~iGvS~~~------~~~l~~~~~~~~--~~~~~~q~~~n~~~~~~~~~~~~~~~-gi~v~~ 205 (315)
.|...+++.+++.+ +--.+.++..+ ...+.++++... ..++.+-+++.....-..+++..+.. ++.+++
T Consensus 193 ~E~~a~~~~~~~~~~~~p~~iS~t~~~~~~l~~G~~~~~~~~~~~~~~~~~~iGiNC~~p~~~~~~l~~l~~~~~~pl~v 272 (335)
T PLN02489 193 LEAQAYVELLEEENIKIPAWISFNSKDGVNVVSGDSLLECASIADSCKKVVAVGINCTPPRFIHGLILSIRKVTSKPIVV 272 (335)
T ss_pred HHHHHHHHHHHHcCCCCeEEEEEEeCCCCccCCCCcHHHHHHHHHhcCCceEEEecCCCHHHHHHHHHHHHhhcCCcEEE
Confidence 67777777777664 55556666422 123344443321 24567777775322225566666554 677777
Q ss_pred ecCCCCCCCCCCccccCCchHHHHHHHHhCCC---HHHHHHHHHhhcCCeeecCC--CCHHHHHHhhcccC
Q 021264 206 YSPLGSPGTRWIKSDVLRHPVLKTAAEKLGKT---PAQVALRWGLQMGHSVLPKS--TNEARIKENFDIFD 271 (315)
Q Consensus 206 ~~pl~~gg~~~~~~~~~~~~~l~~la~~~~~s---~aq~al~~~l~~~~~~i~G~--~~~~~l~~nl~a~~ 271 (315)
| |-+ |....... ......++.+ .++.+.+|.- .+..+|=|| ++|+|+++.-+.++
T Consensus 273 y-PNa--G~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~-~Ga~iIGGCCgt~P~hI~al~~~l~ 332 (335)
T PLN02489 273 Y-PNS--GETYDGEA-------KEWVESTGVSDEDFVSYVNKWRD-AGASLIGGCCRTTPNTIRAISKALS 332 (335)
T ss_pred E-CCC--CCCCCCcc-------CcccCCCCCCHHHHHHHHHHHHH-CCCcEEeeCCCCCHHHHHHHHHHHh
Confidence 6 443 32211100 0000013333 3566777864 467776666 89999988776554
No 20
>PRK08609 hypothetical protein; Provisional
Probab=87.80 E-value=32 Score=34.42 Aligned_cols=183 Identities=15% Similarity=0.113 Sum_probs=95.5
Q ss_pred chHHHHHHHHHHhCCcEEecCCCCC--------CHHHHHHHH---HHhhhcCCcCCCCeEEeeccCCCCCCCCcHHHHHH
Q 021264 29 GIVGNAVDVAIKAGYRHIDCARLYL--------NEKEIGFVL---KKLFEDGVVKREDLWITSKLWCTDLAPKDVPEALD 97 (315)
Q Consensus 29 ~~~~~~l~~A~~~Gi~~~DtA~~Yg--------se~~lG~~l---~~~~~~~~~~R~~~~i~tK~~~~~~~~~~i~~~ve 97 (315)
....++++.|.+.|+.++=.++|+. +...+-..+ +.. .+. .+.=+|++-.-+. +.++......+
T Consensus 349 ~sleemv~~A~~~Gl~~i~iTdH~~~~~~~~~~~~~~l~~~~~ei~~l-~~~-~~~i~Il~GiEv~---i~~~g~~d~~~ 423 (570)
T PRK08609 349 FSIEEMVEACIAKGYEYMAITDHSQYLKVANGLTEERLLEQAEEIKAL-NEK-YPEIDILSGIEMD---ILPDGSLDYDD 423 (570)
T ss_pred CCHHHHHHHHHHCCCCEEEEeCCCCCccccCCCCHHHHHHHHHHHHHH-HHh-cCCCeEEEEEEEe---ecCCcchhhcH
Confidence 4467799999999999887777752 222222222 221 001 1111233333332 22333334444
Q ss_pred HHHHhcCCCccceEeeecCCCccCCCCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeeEeecC------CC--hhhHHHHH
Q 021264 98 NTLQDLQIDYVDLYLIHWPARMKKGSVGFNPENLLPLDIPSTWRAMEALYDSGKARAIGVCN------FS--TKKLGDLL 169 (315)
Q Consensus 98 ~sL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~L~~lk~~GkIr~iGvS~------~~--~~~l~~~~ 169 (315)
..|+. .||+ +.-+|++.. .+..++++.+.++.+.|.+.-||=-. .. ...+++++
T Consensus 424 ~~L~~--~D~v-I~SvH~~~~---------------~~~~~~~~~l~~a~~~~~~dILaHpd~rli~~~~~~~~d~~~i~ 485 (570)
T PRK08609 424 EVLAE--LDYV-IAAIHSSFS---------------QSEEEIMKRLENACRNPYVRLIAHPTGRLIGRRDGYDVNIDQLI 485 (570)
T ss_pred HHHHh--hCEE-EEEeecCCC---------------CCHHHHHHHHHHHhcCCCceEEECCCccccccCCCchHHHHHHH
Confidence 45654 4655 677887532 34567788999999998877776222 11 12334444
Q ss_pred HhcCCCCcccccccCccc--chHHHHHHHHHcCceEEEecCCCCCCCCCCccccCCchHHHHHHHHhCCCHHH
Q 021264 170 EIARVPPAVNQVECHSSW--QQQKLHAFCKSKGVHLSGYSPLGSPGTRWIKSDVLRHPVLKTAAEKLGKTPAQ 240 (315)
Q Consensus 170 ~~~~~~~~~~q~~~n~~~--~~~~~~~~~~~~gi~v~~~~pl~~gg~~~~~~~~~~~~~l~~la~~~~~s~aq 240 (315)
+.+...=..+|++-++.. ....++..|.+.|+.+..-|--..- ..+-..+.-..++++-+.++.+
T Consensus 486 ~~a~~~G~~lEINa~~~r~~~~~~~~~~~~e~Gv~i~igSDAH~~------~~l~~~~~~v~~ar~~~~~~~~ 552 (570)
T PRK08609 486 ELAKETNTALELNANPNRLDLSAEHLKKAQEAGVKLAINTDAHHT------EMLDDMKYGVATARKGWIQKDR 552 (570)
T ss_pred HHHHHhCCEEEEcCCccccCccHHHHHHHHHcCCEEEEECCCCCh------hhhCcHHHHHHHHHHcCCCHHH
Confidence 432211145566655443 2367888899998875543332221 1222233444555555555544
No 21
>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].
Probab=87.22 E-value=5.8 Score=33.56 Aligned_cols=106 Identities=13% Similarity=0.187 Sum_probs=76.7
Q ss_pred HHHHHHHHHHhcCCCccceEeeecCCCccCCCCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeeEeecCCChhhHHHHHHh
Q 021264 92 VPEALDNTLQDLQIDYVDLYLIHWPARMKKGSVGFNPENLLPLDIPSTWRAMEALYDSGKARAIGVCNFSTKKLGDLLEI 171 (315)
Q Consensus 92 i~~~ve~sL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~L~~lk~~GkIr~iGvS~~~~~~l~~~~~~ 171 (315)
+...+++.|..+.-+.+|.+.+..--. ....--+.|+++..-|+-.-++|.||.-+..+.-+-.
T Consensus 60 iq~Dld~gL~~f~d~sFD~VIlsqtLQ----------------~~~~P~~vL~EmlRVgr~~IVsFPNFg~W~~R~~l~~ 123 (193)
T PF07021_consen 60 IQGDLDEGLADFPDQSFDYVILSQTLQ----------------AVRRPDEVLEEMLRVGRRAIVSFPNFGHWRNRLQLLL 123 (193)
T ss_pred EECCHHHhHhhCCCCCccEEehHhHHH----------------hHhHHHHHHHHHHHhcCeEEEEecChHHHHHHHHHHh
Confidence 445566677777777888877653211 1223345577777778888899999998888766665
Q ss_pred cCCCCcccccccCcccch-------HHHHHHHHHcCceEEEecCCCCCC
Q 021264 172 ARVPPAVNQVECHSSWQQ-------QKLHAFCKSKGVHLSGYSPLGSPG 213 (315)
Q Consensus 172 ~~~~~~~~q~~~n~~~~~-------~~~~~~~~~~gi~v~~~~pl~~gg 213 (315)
.+-.|..-.++|.-++.. .+..++|++.|+.|.-..++..++
T Consensus 124 ~GrmPvt~~lPy~WYdTPNih~~Ti~DFe~lc~~~~i~I~~~~~~~~~~ 172 (193)
T PF07021_consen 124 RGRMPVTKALPYEWYDTPNIHLCTIKDFEDLCRELGIRIEERVFLDGGR 172 (193)
T ss_pred cCCCCCCCCCCCcccCCCCcccccHHHHHHHHHHCCCEEEEEEEEcCCC
Confidence 556677888888666543 688999999999999999997654
No 22
>PRK08392 hypothetical protein; Provisional
Probab=85.20 E-value=23 Score=30.34 Aligned_cols=182 Identities=14% Similarity=0.167 Sum_probs=89.6
Q ss_pred hHHHHHHHHHHhCCcEEecCCCCC--CHHHHHHHHHHhhhcCCcCCCCe--EEeeccCCCCCCCCcHHHHHHHHHHhcCC
Q 021264 30 IVGNAVDVAIKAGYRHIDCARLYL--NEKEIGFVLKKLFEDGVVKREDL--WITSKLWCTDLAPKDVPEALDNTLQDLQI 105 (315)
Q Consensus 30 ~~~~~l~~A~~~Gi~~~DtA~~Yg--se~~lG~~l~~~~~~~~~~R~~~--~i~tK~~~~~~~~~~i~~~ve~sL~~Lg~ 105 (315)
...+.++.|.+.|++.+=.+++.- ....+...++...+-. .+.++ ++-.-+.. .++. ....++.++. .
T Consensus 15 ~~~e~v~~A~~~Gl~~i~iTdH~~~~~~~~~~~y~~~i~~l~--~~~~i~il~GiE~~~---~~~~-~~~~~~~~~~--~ 86 (215)
T PRK08392 15 SVRDNIAEAERKGLRLVGISDHIHYFTPSKFNAYINEIRQWG--EESEIVVLAGIEANI---TPNG-VDITDDFAKK--L 86 (215)
T ss_pred CHHHHHHHHHHcCCCEEEEccCCCccchhhHHHHHHHHHHHh--hccCceEEEeEEeee---cCCc-chhHHHHHhh--C
Confidence 477899999999999886665542 1112222332211100 11222 22222222 1222 3444455553 3
Q ss_pred CccceEeeecCCCccCCCCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeeEeecC----C----ChhhHHHHHHhcCCCCc
Q 021264 106 DYVDLYLIHWPARMKKGSVGFNPENLLPLDIPSTWRAMEALYDSGKARAIGVCN----F----STKKLGDLLEIARVPPA 177 (315)
Q Consensus 106 d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~L~~lk~~GkIr~iGvS~----~----~~~~l~~~~~~~~~~~~ 177 (315)
||+ +.-+|..... ......++.+.++.+.|.+.-+|=-. + ..+.++++++.....=.
T Consensus 87 D~v-I~SvH~~~~~--------------~~~~~Y~~~~~~~~~~~~~dvlgH~d~~~~~~~~~~~~~~~~i~~~~~~~g~ 151 (215)
T PRK08392 87 DYV-IASVHEWFGR--------------PEHHEYIELVKLALMDENVDIIGHFGNSFPYIGYPSEEELKEILDLAEAYGK 151 (215)
T ss_pred CEE-EEEeecCcCC--------------cHHHHHHHHHHHHHhcCCCCEEeCCCccccCCCCchHHHHHHHHHHHHHhCC
Confidence 555 6677842111 23467788888888888766555211 0 11233444333221112
Q ss_pred ccccccCcccchHHHHHHHHHcCceEEEecCCCCCCCCCCccccCCchHHHHHHHHhCCCHHH
Q 021264 178 VNQVECHSSWQQQKLHAFCKSKGVHLSGYSPLGSPGTRWIKSDVLRHPVLKTAAEKLGKTPAQ 240 (315)
Q Consensus 178 ~~q~~~n~~~~~~~~~~~~~~~gi~v~~~~pl~~gg~~~~~~~~~~~~~l~~la~~~~~s~aq 240 (315)
.+.++-..-.+...+++.|++.|+.++.-|--..- ..+-..+...+++++.|.++.+
T Consensus 152 ~lEiNt~~~~p~~~~l~~~~~~G~~~~igSDAH~~------~~vg~~~~a~~~~~~~g~~~~~ 208 (215)
T PRK08392 152 AFEISSRYRVPDLEFIRECIKRGIKLTFASDAHRP------EDVGNVSWSLKVFKKAGGKKED 208 (215)
T ss_pred EEEEeCCCCCCCHHHHHHHHHcCCEEEEeCCCCCh------HHCCcHHHHHHHHHHcCCCHHH
Confidence 22222222234567899999999876553332221 0111124456666777766654
No 23
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=79.76 E-value=12 Score=35.27 Aligned_cols=81 Identities=15% Similarity=0.077 Sum_probs=51.0
Q ss_pred CcchHHHHHHHHHHhCCcEEecCCCCCCHHHHHHHHHHhhhcCCcCCCCeEEeeccCCCCCCCCcHHHHHHHHHHhcC--
Q 021264 27 DPGIVGNAVDVAIKAGYRHIDCARLYLNEKEIGFVLKKLFEDGVVKREDLWITSKLWCTDLAPKDVPEALDNTLQDLQ-- 104 (315)
Q Consensus 27 ~~~~~~~~l~~A~~~Gi~~~DtA~~Ygse~~lG~~l~~~~~~~~~~R~~~~i~tK~~~~~~~~~~i~~~ve~sL~~Lg-- 104 (315)
++.....++++|++.|++++|||.+.-... .++..+ .+..+.+..-+| ++|.-..--.....+.+.
T Consensus 77 p~~~~~~i~ka~i~~gv~yvDts~~~~~~~----~~~~~a-----~~Agit~v~~~G---~dPGi~nv~a~~a~~~~~~~ 144 (389)
T COG1748 77 PPFVDLTILKACIKTGVDYVDTSYYEEPPW----KLDEEA-----KKAGITAVLGCG---FDPGITNVLAAYAAKELFDE 144 (389)
T ss_pred CchhhHHHHHHHHHhCCCEEEcccCCchhh----hhhHHH-----HHcCeEEEcccC---cCcchHHHHHHHHHHHhhcc
Confidence 445556899999999999999997765422 222221 234455555543 344333333444444444
Q ss_pred CCccceEeeecCCCc
Q 021264 105 IDYVDLYLIHWPARM 119 (315)
Q Consensus 105 ~d~iDl~~lH~p~~~ 119 (315)
+++||+|..+-|++.
T Consensus 145 i~si~iy~g~~g~~~ 159 (389)
T COG1748 145 IESIDIYVGGLGEHG 159 (389)
T ss_pred ccEEEEEEecCCCCC
Confidence 899999999988775
No 24
>PRK10558 alpha-dehydro-beta-deoxy-D-glucarate aldolase; Provisional
Probab=78.34 E-value=24 Score=31.32 Aligned_cols=101 Identities=13% Similarity=0.093 Sum_probs=64.3
Q ss_pred HHHHHhcCCeeeEee-cCCChhhHHHHHHhcCCCCcccccccCcccch--HHHHHHHHHcCceEEEecCCCCCCCCCCcc
Q 021264 143 MEALYDSGKARAIGV-CNFSTKKLGDLLEIARVPPAVNQVECHSSWQQ--QKLHAFCKSKGVHLSGYSPLGSPGTRWIKS 219 (315)
Q Consensus 143 L~~lk~~GkIr~iGv-S~~~~~~l~~~~~~~~~~~~~~q~~~n~~~~~--~~~~~~~~~~gi~v~~~~pl~~gg~~~~~~ 219 (315)
|.+.-++|+. -+|+ .......+.+++...++++.++=.+=.+++.. ..++..|+..|+..++.-|-..
T Consensus 10 lk~~l~~g~~-~~g~~~~~~sp~~~e~~a~~G~D~v~iD~EHg~~~~~~~~~~i~a~~~~g~~~lVRvp~~~-------- 80 (256)
T PRK10558 10 FKAALAAKQV-QIGCWSALANPITTEVLGLAGFDWLVLDGEHAPNDVSTFIPQLMALKGSASAPVVRVPTNE-------- 80 (256)
T ss_pred HHHHHHcCCc-eEEEEEcCCCcHHHHHHHhcCCCEEEEccccCCCCHHHHHHHHHHHhhcCCCcEEECCCCC--------
Confidence 4444455775 3553 33333455666666777766666666666655 5788899999999998876632
Q ss_pred ccCCchHHHHHHHHhCCCHHHHHHHHHhhcC--CeeecCCCCHHHHHHhhcccCc
Q 021264 220 DVLRHPVLKTAAEKLGKTPAQVALRWGLQMG--HSVLPKSTNEARIKENFDIFDW 272 (315)
Q Consensus 220 ~~~~~~~l~~la~~~~~s~aq~al~~~l~~~--~~~i~G~~~~~~l~~nl~a~~~ 272 (315)
...+..+|..| ..++|-..|.+++++.+++..+
T Consensus 81 --------------------~~~i~r~LD~Ga~giivP~v~tae~a~~~v~a~ky 115 (256)
T PRK10558 81 --------------------PVIIKRLLDIGFYNFLIPFVETAEEARRAVASTRY 115 (256)
T ss_pred --------------------HHHHHHHhCCCCCeeeecCcCCHHHHHHHHHHcCC
Confidence 22345566666 3556777777777777766655
No 25
>COG2040 MHT1 Homocysteine/selenocysteine methylase (S-methylmethionine-dependent) [Amino acid transport and metabolism]
Probab=77.30 E-value=55 Score=29.51 Aligned_cols=218 Identities=17% Similarity=0.145 Sum_probs=117.7
Q ss_pred CcchHHHHHHHHHHhCCcEEecCCCCC-----CHH----HHHHHHHHhhh-----cCCcCCCCeEEeeccCCC-------
Q 021264 27 DPGIVGNAVDVAIKAGYRHIDCARLYL-----NEK----EIGFVLKKLFE-----DGVVKREDLWITSKLWCT------- 85 (315)
Q Consensus 27 ~~~~~~~~l~~A~~~Gi~~~DtA~~Yg-----se~----~lG~~l~~~~~-----~~~~~R~~~~i~tK~~~~------- 85 (315)
.++.+.++-...+++|-+.++|+..-- +|+ .+-..++..++ +.-+-.+...|+.-++++
T Consensus 41 ~peiv~~vh~df~~aGa~ii~T~TYqa~~~~~~e~~~~~~~~~l~~~sv~la~~ard~~g~~~~~iagsiGP~ga~~a~E 120 (300)
T COG2040 41 EPEIVRNVHADFLRAGADIITTATYQATPEGFAERVSEDEAKQLIRRSVELARAARDAYGEENQNIAGSLGPYGAALADE 120 (300)
T ss_pred CHHHHHHHHHHHHHhcCcEEeehhhhcCHHHHHHhcchhHHHHHHHHHHHHHHHHHHHhcccccccceeccchhhhcChh
Confidence 445566677788899999999975321 122 11111111100 000234445566666542
Q ss_pred -----CCCCCcHHHHHHHHHHhcCCCccceEeeecCCCccCCCCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeeEeecCC
Q 021264 86 -----DLAPKDVPEALDNTLQDLQIDYVDLYLIHWPARMKKGSVGFNPENLLPLDIPSTWRAMEALYDSGKARAIGVCNF 160 (315)
Q Consensus 86 -----~~~~~~i~~~ve~sL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~L~~lk~~GkIr~iGvS~~ 160 (315)
..+.+.+.+-...-++.|.-.-+|++.+...-.. ...+.+.+.+++. +|=-.|+++-.
T Consensus 121 y~g~Y~~~~d~~~~fh~~rie~l~~ag~Dlla~ETip~i--------------~Ea~Aiv~l~~~~---s~p~wISfT~~ 183 (300)
T COG2040 121 YRGDYGASQDALYKFHRPRIEALNEAGADLLACETLPNI--------------TEAEAIVQLVQEF---SKPAWISFTLN 183 (300)
T ss_pred hcCccCccHHHHHHHHHHHHHHHHhCCCcEEeecccCCh--------------HHHHHHHHHHHHh---CCceEEEEEeC
Confidence 1223444445566677777777999987654321 1223445555555 88888998877
Q ss_pred Ch------hhHHHHHHhcCC--CCcccccccCcccchHHHHHHH--HHcCceEEEecCCCCCCCCCCcc-ccCCchHHHH
Q 021264 161 ST------KKLGDLLEIARV--PPAVNQVECHSSWQQQKLHAFC--KSKGVHLSGYSPLGSPGTRWIKS-DVLRHPVLKT 229 (315)
Q Consensus 161 ~~------~~l~~~~~~~~~--~~~~~q~~~n~~~~~~~~~~~~--~~~gi~v~~~~pl~~gg~~~~~~-~~~~~~~l~~ 229 (315)
+. ..+.++...... .+..+.+++...++-..+++.. ...++++++|-- . |.-.... +....+..
T Consensus 184 d~~~lr~Gt~l~eaa~~~~~~~~iaa~gvNC~~p~~~~a~i~~l~~~~~~~piivYPN--S-Ge~~d~~~k~w~~p~~-- 258 (300)
T COG2040 184 DDTRLRDGTPLSEAAAILAGLPNIAALGVNCCHPDHIPAAIEELSKLLTGKPIIVYPN--S-GEQYDPAGKTWHGPAL-- 258 (300)
T ss_pred CCCccCCCccHHHHHHHHhcCcchhheeeccCChhhhHHHHHHHHhcCCCCceEEcCC--c-ccccCcCCCcCCCCCC--
Confidence 42 344555554432 3555666666555557788877 445889999844 3 2111110 00000000
Q ss_pred HHHHhCCCHHHHHHHHHhhcCCeeecCC--CCHHHHHHhhcccC
Q 021264 230 AAEKLGKTPAQVALRWGLQMGHSVLPKS--TNEARIKENFDIFD 271 (315)
Q Consensus 230 la~~~~~s~aq~al~~~l~~~~~~i~G~--~~~~~l~~nl~a~~ 271 (315)
..-+-.+++..|+-. |..+|=|| +++.|+.+.-++++
T Consensus 259 ----~~~~~~~~a~~w~~~-GA~iiGGCCrt~p~~I~ei~~~~~ 297 (300)
T COG2040 259 ----SADSYSTLAKSWVEA-GARIIGGCCRTGPAHIAEIAKALK 297 (300)
T ss_pred ----chhHHHHHHHHHHhc-ccceeeeccCCChHHHHHHHHHHh
Confidence 001225567777764 55555555 77888877766543
No 26
>cd01973 Nitrogenase_VFe_beta_like Nitrogenase_VFe_beta -like: Nitrogenase VFe protein, beta subunit like. This group contains proteins similar to the beta subunits of the VFe protein of the vanadium-dependent (V-) nitrogenase. Nitrogenase catalyzes the ATP-dependent reduction of dinitrogen (N2) to ammonia. In addition to V-nitrogenase there is a molybdenum (Mo)-dependent nitrogenase and an iron only (Fe-) nitrogenase. The Mo-nitrogenase is the most widespread and best characterized of these systems. These systems consist of component 1 (VFe protein, FeFe protein or, MoFe protein respectively) and, component 2 (Fe protein). MoFe is an alpha2beta2 tetramer, V-and Fe- nitrogenases are alpha2beta2delta2 hexamers. The alpha and beta subunits of VFe and FeFe are similar to the alpha and beta subunits of MoFe. For MoFe each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha subunit. The Fe p
Probab=77.10 E-value=68 Score=31.04 Aligned_cols=112 Identities=15% Similarity=0.074 Sum_probs=60.1
Q ss_pred CCCCHHHHHHHHHHhhhcCCcCCCC-eEEeeccCCCCCCCCcHHHHHHHHHHhcCCC----ccceEeeecCCCccCCCCC
Q 021264 51 LYLNEKEIGFVLKKLFEDGVVKRED-LWITSKLWCTDLAPKDVPEALDNTLQDLQID----YVDLYLIHWPARMKKGSVG 125 (315)
Q Consensus 51 ~Ygse~~lG~~l~~~~~~~~~~R~~-~~i~tK~~~~~~~~~~i~~~ve~sL~~Lg~d----~iDl~~lH~p~~~~~~~~~ 125 (315)
.||.|+.|-++|+...+.. +..+ ++|.|-+. ...--+.+..-+++.-++++-+ .+.++.+|.|+......
T Consensus 67 VfGG~~~L~~~I~~~~~~~--~~p~~I~V~tTC~-~eiIGDDi~~vv~~~~~~~~~e~~~~~~~vi~v~tpgF~Gs~~-- 141 (454)
T cd01973 67 VFGGAKRVEEGVLVLARRY--PDLRVIPIITTCS-TEIIGDDIEGVIRKLNEALKEEFPDREVHLIPVHTPSFKGSMV-- 141 (454)
T ss_pred EECcHHHHHHHHHHHHHhc--CCCCEEEEECCch-HhhhccCHHHHHHHHHhhhhhccCCCCCeEEEeeCCCcCCCHH--
Confidence 4788888889988865432 3234 55666553 3333455666655544443222 47889999888752110
Q ss_pred CCCCCCCCCCHHHHHHHHHH-HHh----cCCeeeEeecC--CChhhHHHHHHhcCCC
Q 021264 126 FNPENLLPLDIPSTWRAMEA-LYD----SGKARAIGVCN--FSTKKLGDLLEIARVP 175 (315)
Q Consensus 126 ~~~~~~~~~~~~~~~~~L~~-lk~----~GkIr~iGvS~--~~~~~l~~~~~~~~~~ 175 (315)
......++++-+ +.. +++|--||-.+ -+.+.+.++++..++.
T Consensus 142 --------~G~~~a~~ali~~~~~~~~~~~~VNii~~~~~~~D~~ei~~lL~~~Gl~ 190 (454)
T cd01973 142 --------TGYDEAVRSVVKTIAKKGAPSGKLNVFTGWVNPGDVVELKHYLSEMDVE 190 (454)
T ss_pred --------HHHHHHHHHHHHHhcccCCCCCcEEEECCCCChHHHHHHHHHHHHcCCC
Confidence 112233333322 221 46688786432 2235566666666553
No 27
>cd03319 L-Ala-DL-Glu_epimerase L-Ala-D/L-Glu epimerase catalyzes the epimerization of L-Ala-D/L-Glu and other dipeptides. The genomic context and the substrate specificity of characterized members of this family from E.coli and B.subtilis indicates a possible role in the metabolism of the murein peptide of peptidoglycan, of which L-Ala-D-Glu is a component. L-Ala-D/L-Glu epimerase is a member of the enolase-superfamily, which is characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=75.56 E-value=64 Score=29.34 Aligned_cols=149 Identities=14% Similarity=0.116 Sum_probs=88.1
Q ss_pred CcchHHHHHHHHHHhCCcEEecCCCCCCHHHHH--HHHHHhhhcCCcCCCCeEEeeccCCCCCCCCcHHHHHHHHHHhcC
Q 021264 27 DPGIVGNAVDVAIKAGYRHIDCARLYLNEKEIG--FVLKKLFEDGVVKREDLWITSKLWCTDLAPKDVPEALDNTLQDLQ 104 (315)
Q Consensus 27 ~~~~~~~~l~~A~~~Gi~~~DtA~~Ygse~~lG--~~l~~~~~~~~~~R~~~~i~tK~~~~~~~~~~i~~~ve~sL~~Lg 104 (315)
++++..+.++.+.+.|++.|+.--.-..+..+. +++++. ++ ++-|.-+... ..+.+. -..+-+.|+.+
T Consensus 134 ~~~~~~~~~~~~~~~Gf~~iKik~g~~~~~d~~~v~~lr~~-----~g--~~~l~vD~n~-~~~~~~-A~~~~~~l~~~- 203 (316)
T cd03319 134 TPEAMAAAAKKAAKRGFPLLKIKLGGDLEDDIERIRAIREA-----AP--DARLRVDANQ-GWTPEE-AVELLRELAEL- 203 (316)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEEeCCChhhHHHHHHHHHHh-----CC--CCeEEEeCCC-CcCHHH-HHHHHHHHHhc-
Confidence 456667778888899999998742111122111 233332 23 4556666632 223221 12223344443
Q ss_pred CCccceEeeecCCCccCCCCCCCCCCCCCCCHHHHHHHHHHHHhcCCee-eEeecCCChhhHHHHHHhcCCCCccccccc
Q 021264 105 IDYVDLYLIHWPARMKKGSVGFNPENLLPLDIPSTWRAMEALYDSGKAR-AIGVCNFSTKKLGDLLEIARVPPAVNQVEC 183 (315)
Q Consensus 105 ~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~L~~lk~~GkIr-~iGvS~~~~~~l~~~~~~~~~~~~~~q~~~ 183 (315)
++.++-.|-.. +-++.+.+|++...|. ..|=+-++...+.++++... .+++|...
T Consensus 204 ----~l~~iEeP~~~------------------~d~~~~~~L~~~~~ipIa~~E~~~~~~~~~~~~~~~~--~d~v~~~~ 259 (316)
T cd03319 204 ----GVELIEQPVPA------------------GDDDGLAYLRDKSPLPIMADESCFSAADAARLAGGGA--YDGINIKL 259 (316)
T ss_pred ----CCCEEECCCCC------------------CCHHHHHHHHhcCCCCEEEeCCCCCHHHHHHHHhcCC--CCEEEEec
Confidence 45555544321 2366778888877666 44555677888888877644 47777776
Q ss_pred Cccc---chHHHHHHHHHcCceEEEecCC
Q 021264 184 HSSW---QQQKLHAFCKSKGVHLSGYSPL 209 (315)
Q Consensus 184 n~~~---~~~~~~~~~~~~gi~v~~~~pl 209 (315)
+.+- ...++..+|+++|+.++.++-+
T Consensus 260 ~~~GGi~~~~~~~~~a~~~gi~~~~~~~~ 288 (316)
T cd03319 260 MKTGGLTEALRIADLARAAGLKVMVGCMV 288 (316)
T ss_pred cccCCHHHHHHHHHHHHHcCCCEEEECch
Confidence 5542 2267899999999999998655
No 28
>KOG0369 consensus Pyruvate carboxylase [Energy production and conversion]
Probab=74.61 E-value=49 Score=33.50 Aligned_cols=146 Identities=18% Similarity=0.165 Sum_probs=82.1
Q ss_pred chHHHHHHHHHHhCCcEEecCCCCCCHHHHHHHHHHhhhcCCcCCCCeEEeeccCCCCCCCCcHHHHHHHHHHhcCCCcc
Q 021264 29 GIVGNAVDVAIKAGYRHIDCARLYLNEKEIGFVLKKLFEDGVVKREDLWITSKLWCTDLAPKDVPEALDNTLQDLQIDYV 108 (315)
Q Consensus 29 ~~~~~~l~~A~~~Gi~~~DtA~~Ygse~~lG~~l~~~~~~~~~~R~~~~i~tK~~~~~~~~~~i~~~ve~sL~~Lg~d~i 108 (315)
+-+.++.+.|-|.|++.+- .|. |+--+..-+. +-++-|+..|..++- ..--.+.+..+--.-.-+
T Consensus 43 EIaIRvFRa~tEL~~~tvA---iYs-eqD~~sMHRq-------KADEaY~iGk~l~PV----~AYL~ideii~iak~~~v 107 (1176)
T KOG0369|consen 43 EIAIRVFRAATELSMRTVA---IYS-EQDRLSMHRQ-------KADEAYLIGKGLPPV----GAYLAIDEIISIAKKHNV 107 (1176)
T ss_pred cchhHHHHHHhhhcceEEE---EEe-ccchhhhhhh-------ccccceecccCCCch----hhhhhHHHHHHHHHHcCC
Confidence 5588999999999999774 573 3322333333 568889999985433 222333333333333345
Q ss_pred ceEeeecCCCccCCCCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeeEeecCCChhhHHHHH--------H-hcCCCCccc
Q 021264 109 DLYLIHWPARMKKGSVGFNPENLLPLDIPSTWRAMEALYDSGKARAIGVCNFSTKKLGDLL--------E-IARVPPAVN 179 (315)
Q Consensus 109 Dl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~L~~lk~~GkIr~iGvS~~~~~~l~~~~--------~-~~~~~~~~~ 179 (315)
|.+ | |..- .+.|--+..+...+. =|++||=| ++.++..- . .++++ ++
T Consensus 108 dav--H-PGYG---------------FLSErsdFA~av~~A-Gi~fiGPs---peVi~~mGDKv~AR~~Ai~agVp--vV 163 (1176)
T KOG0369|consen 108 DAV--H-PGYG---------------FLSERSDFAQAVQDA-GIRFIGPS---PEVIDSMGDKVAARAIAIEAGVP--VV 163 (1176)
T ss_pred Cee--c-CCcc---------------ccccchHHHHHHHhc-CceEeCCC---HHHHHHhhhHHHHHHHHHHcCCC--cc
Confidence 554 4 2221 112223334444445 47899944 44433221 1 12221 12
Q ss_pred ccccCcccchHHHHHHHHHcCceEEEecCCCCCC
Q 021264 180 QVECHSSWQQQKLHAFCKSKGVHLSGYSPLGSPG 213 (315)
Q Consensus 180 q~~~n~~~~~~~~~~~~~~~gi~v~~~~pl~~gg 213 (315)
..-=.+...-.+.+++|+++|.+||-...+++||
T Consensus 164 PGTpgPitt~~EA~eF~k~yG~PvI~KAAyGGGG 197 (1176)
T KOG0369|consen 164 PGTPGPITTVEEALEFVKEYGLPVIIKAAYGGGG 197 (1176)
T ss_pred CCCCCCcccHHHHHHHHHhcCCcEEEeecccCCC
Confidence 2222233333789999999999999999998876
No 29
>cd07944 DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase-like, N-terminal catalytic TIM barrel domain. This family of bacterial enzymes is sequence-similar to 4-hydroxy-2-oxovalerate aldolase (HOA) but its exact function is unknown. This family includes the Bacteroides vulgatus Bvu_2661 protein and belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues t
Probab=74.40 E-value=34 Score=30.51 Aligned_cols=109 Identities=17% Similarity=0.102 Sum_probs=60.5
Q ss_pred CCCCcHHHHHHHHHHhcCCCccceEeeecCCCccCCCCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeeEeecCCCh---h
Q 021264 87 LAPKDVPEALDNTLQDLQIDYVDLYLIHWPARMKKGSVGFNPENLLPLDIPSTWRAMEALYDSGKARAIGVCNFST---K 163 (315)
Q Consensus 87 ~~~~~i~~~ve~sL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~L~~lk~~GkIr~iGvS~~~~---~ 163 (315)
++.+ .+..+-+.|.++|+++|++-+.........+... ....+.++.+..+.+ +..+..+++.... +
T Consensus 17 f~~~-~~~~ia~~L~~~GVd~IEvG~~~~~~~~~~~~~~--------~~~~~~~~~i~~~~~-~~~~~~~~~~~~~~~~~ 86 (266)
T cd07944 17 FGDE-FVKAIYRALAAAGIDYVEIGYRSSPEKEFKGKSA--------FCDDEFLRRLLGDSK-GNTKIAVMVDYGNDDID 86 (266)
T ss_pred CCHH-HHHHHHHHHHHCCCCEEEeecCCCCccccCCCcc--------CCCHHHHHHHHhhhc-cCCEEEEEECCCCCCHH
Confidence 4443 5677788899999999999865432211111110 223556666666543 2455566655443 3
Q ss_pred hHHHHHHhcCCCCcccccccCcccchHHHHHHHHHcCceEEEe
Q 021264 164 KLGDLLEIARVPPAVNQVECHSSWQQQKLHAFCKSKGVHLSGY 206 (315)
Q Consensus 164 ~l~~~~~~~~~~~~~~q~~~n~~~~~~~~~~~~~~~gi~v~~~ 206 (315)
.++.+.+ ..++..-+.+..+.+..-.+.+++++++|+.|...
T Consensus 87 ~l~~a~~-~gv~~iri~~~~~~~~~~~~~i~~ak~~G~~v~~~ 128 (266)
T cd07944 87 LLEPASG-SVVDMIRVAFHKHEFDEALPLIKAIKEKGYEVFFN 128 (266)
T ss_pred HHHHHhc-CCcCEEEEecccccHHHHHHHHHHHHHCCCeEEEE
Confidence 3333322 22322223334444444477899999999877654
No 30
>PRK13796 GTPase YqeH; Provisional
Probab=72.65 E-value=53 Score=30.78 Aligned_cols=122 Identities=16% Similarity=0.092 Sum_probs=75.3
Q ss_pred CCcchHHHHHHHHHHhC---CcEEecCCCCCCHHHHHHHHHHhhhcCCcCCCCeEEeeccCCCC--CCCCcHHHHHHHHH
Q 021264 26 ADPGIVGNAVDVAIKAG---YRHIDCARLYLNEKEIGFVLKKLFEDGVVKREDLWITSKLWCTD--LAPKDVPEALDNTL 100 (315)
Q Consensus 26 ~~~~~~~~~l~~A~~~G---i~~~DtA~~Ygse~~lG~~l~~~~~~~~~~R~~~~i~tK~~~~~--~~~~~i~~~ve~sL 100 (315)
.+.++..++++..-+.- +-++|..+.-++- -..|.... + .++-++|.+|.--.. ...+.+...+....
T Consensus 54 ~~~~~~~~~l~~i~~~~~lIv~VVD~~D~~~s~---~~~L~~~~--~--~kpviLViNK~DLl~~~~~~~~i~~~l~~~~ 126 (365)
T PRK13796 54 LTDDDFLKLLNGIGDSDALVVNVVDIFDFNGSW---IPGLHRFV--G--NNPVLLVGNKADLLPKSVKKNKVKNWLRQEA 126 (365)
T ss_pred CCHHHHHHHHHhhcccCcEEEEEEECccCCCch---hHHHHHHh--C--CCCEEEEEEchhhCCCccCHHHHHHHHHHHH
Confidence 45566777777776555 4568876655531 11233321 1 356688999983211 11233455555566
Q ss_pred HhcCCCccceEeeecCCCccCCCCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeeEeecCCChhhHHHHH
Q 021264 101 QDLQIDYVDLYLIHWPARMKKGSVGFNPENLLPLDIPSTWRAMEALYDSGKARAIGVCNFSTKKLGDLL 169 (315)
Q Consensus 101 ~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~L~~lk~~GkIr~iGvS~~~~~~l~~~~ 169 (315)
+.+|....|++++-.-.. ....++++.+.++.+.+.+-.+|.+|..-..+.-.+
T Consensus 127 k~~g~~~~~v~~vSAk~g---------------~gI~eL~~~I~~~~~~~~v~vvG~~NvGKSTLiN~L 180 (365)
T PRK13796 127 KELGLRPVDVVLISAQKG---------------HGIDELLEAIEKYREGRDVYVVGVTNVGKSTLINRI 180 (365)
T ss_pred HhcCCCcCcEEEEECCCC---------------CCHHHHHHHHHHhcCCCeEEEEcCCCCcHHHHHHHH
Confidence 677765457666543221 457888999988888888999999999877664433
No 31
>PRK10128 2-keto-3-deoxy-L-rhamnonate aldolase; Provisional
Probab=72.44 E-value=61 Score=29.00 Aligned_cols=101 Identities=11% Similarity=0.082 Sum_probs=64.6
Q ss_pred HHHHHhcCCeeeEee-cCCChhhHHHHHHhcCCCCcccccccCcccch--HHHHHHHHHcCceEEEecCCCCCCCCCCcc
Q 021264 143 MEALYDSGKARAIGV-CNFSTKKLGDLLEIARVPPAVNQVECHSSWQQ--QKLHAFCKSKGVHLSGYSPLGSPGTRWIKS 219 (315)
Q Consensus 143 L~~lk~~GkIr~iGv-S~~~~~~l~~~~~~~~~~~~~~q~~~n~~~~~--~~~~~~~~~~gi~v~~~~pl~~gg~~~~~~ 219 (315)
|.+.-++|+.- +|+ .......+.+++...++++.++=.+-.+++.. ..++..++..|+..++.-|-..
T Consensus 9 lk~~L~~G~~~-~G~~~~~~sp~~~E~~a~~GfD~v~iD~EHg~~~~~~l~~~i~a~~~~g~~~lVRvp~~~-------- 79 (267)
T PRK10128 9 FKEGLRKGEVQ-IGLWLSSTTSYMAEIAATSGYDWLLIDGEHAPNTIQDLYHQLQAIAPYASQPVIRPVEGS-------- 79 (267)
T ss_pred HHHHHHcCCce-EEEEecCCCcHHHHHHHHcCCCEEEEccccCCCCHHHHHHHHHHHHhcCCCeEEECCCCC--------
Confidence 44444557753 443 33333455555566677766666666666655 5688888999998888766421
Q ss_pred ccCCchHHHHHHHHhCCCHHHHHHHHHhhcC--CeeecCCCCHHHHHHhhcccCc
Q 021264 220 DVLRHPVLKTAAEKLGKTPAQVALRWGLQMG--HSVLPKSTNEARIKENFDIFDW 272 (315)
Q Consensus 220 ~~~~~~~l~~la~~~~~s~aq~al~~~l~~~--~~~i~G~~~~~~l~~nl~a~~~ 272 (315)
...+..+|..| ..++|-..|.++.++.+++..+
T Consensus 80 --------------------~~~i~r~LD~GA~GIivP~V~saeeA~~~V~a~rY 114 (267)
T PRK10128 80 --------------------KPLIKQVLDIGAQTLLIPMVDTAEQARQVVSATRY 114 (267)
T ss_pred --------------------HHHHHHHhCCCCCeeEecCcCCHHHHHHHHHhcCC
Confidence 23456677777 3566777888888877777665
No 32
>PRK04452 acetyl-CoA decarbonylase/synthase complex subunit delta; Provisional
Probab=71.37 E-value=34 Score=31.46 Aligned_cols=97 Identities=19% Similarity=0.199 Sum_probs=57.0
Q ss_pred HHHHhcCCCccceEeeecCCCccCCCCCCCCCCCCCCCHHHHHHHHHHHHhcCCeee-EeecCC---ChhhHHHHHHhcC
Q 021264 98 NTLQDLQIDYVDLYLIHWPARMKKGSVGFNPENLLPLDIPSTWRAMEALYDSGKARA-IGVCNF---STKKLGDLLEIAR 173 (315)
Q Consensus 98 ~sL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~L~~lk~~GkIr~-iGvS~~---~~~~l~~~~~~~~ 173 (315)
+.-+.+|.|+||+-+.- .++...+ ...++..+.++...+.=.+-- |..|.. +++.+++.++.++
T Consensus 83 ~q~~~~GAd~Idl~~~s-~dp~~~d-----------~~~~e~~~~Vk~V~eavd~PL~Id~s~n~~kD~evleaale~~~ 150 (319)
T PRK04452 83 KCVEEYGADMITLHLIS-TDPNGKD-----------KSPEEAAKTVEEVLQAVDVPLIIGGSGNPEKDAEVLEKVAEAAE 150 (319)
T ss_pred HHHHHhCCCEEEEECCC-CCccccc-----------chHHHHHHHHHHHHHhCCCCEEEecCCCCCCCHHHHHHHHHHhC
Confidence 34457887777776432 1111000 234445555555544433333 555533 6889999988876
Q ss_pred CC-CcccccccCcccchHHHHHHHHHcCceEEEecCC
Q 021264 174 VP-PAVNQVECHSSWQQQKLHAFCKSKGVHLSGYSPL 209 (315)
Q Consensus 174 ~~-~~~~q~~~n~~~~~~~~~~~~~~~gi~v~~~~pl 209 (315)
.. +-++-.... .-..+.+.|+++|..|++.+|.
T Consensus 151 g~~pLInSat~e---n~~~i~~lA~~y~~~Vva~s~~ 184 (319)
T PRK04452 151 GERCLLGSAEED---NYKKIAAAAMAYGHAVIAWSPL 184 (319)
T ss_pred CCCCEEEECCHH---HHHHHHHHHHHhCCeEEEEcHH
Confidence 43 433333321 2267999999999999999876
No 33
>TIGR00381 cdhD CO dehydrogenase/acetyl-CoA synthase, delta subunit. This is the small subunit of a heterodimer which catalyzes the reaction CO + H2O + Acceptor = CO2 + Reduced acceptor and is involved in the synthesis of acetyl-CoA from CO2 and H2.
Probab=71.11 E-value=94 Score=29.32 Aligned_cols=94 Identities=14% Similarity=0.064 Sum_probs=59.9
Q ss_pred ccceEeeecCCCccCCCCCCCCCCCCCCCHHHHHHHHHHHHhcCCee-eEeec---CCChhhHHHHHHhcCC-CCccccc
Q 021264 107 YVDLYLIHWPARMKKGSVGFNPENLLPLDIPSTWRAMEALYDSGKAR-AIGVC---NFSTKKLGDLLEIARV-PPAVNQV 181 (315)
Q Consensus 107 ~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~L~~lk~~GkIr-~iGvS---~~~~~~l~~~~~~~~~-~~~~~q~ 181 (315)
.+|++.||.-.....+ .+.+.++..+.+++..+.=.+- -|+=| ..+++.+++.++..+. ++-++-.
T Consensus 153 ~aD~Ialr~~S~DP~~---------~d~~~~e~a~~vk~V~~av~vPLIL~gsg~~~kD~eVLeaaLe~~~G~kpLL~SA 223 (389)
T TIGR00381 153 GADMVTIHLISTDPKL---------DDKSPSEAAKVLEDVLQAVDVPIVIGGSGNPEKDPLVLEKAAEVAEGERCLLASA 223 (389)
T ss_pred CCCEEEEEecCCCccc---------cccCHHHHHHHHHHHHHhCCCCEEEeCCCCCcCCHHHHHHHHHHhCCCCcEEEec
Confidence 4789999865432111 1145667777777774443332 22222 4578899999988764 4544444
Q ss_pred ccCcccchHHHHHHHHHcCceEEEecCCCC
Q 021264 182 ECHSSWQQQKLHAFCKSKGVHLSGYSPLGS 211 (315)
Q Consensus 182 ~~n~~~~~~~~~~~~~~~gi~v~~~~pl~~ 211 (315)
.... .-..+.+.|+++|..+++++|..-
T Consensus 224 t~e~--Ny~~ia~lAk~yg~~Vvv~s~~Di 251 (389)
T TIGR00381 224 NLDL--DYEKIANAAKKYGHVVLSWTIMDI 251 (389)
T ss_pred Cchh--hHHHHHHHHHHhCCeEEEEcCCcH
Confidence 3321 226799999999999999998854
No 34
>TIGR03239 GarL 2-dehydro-3-deoxyglucarate aldolase. In E. coli this enzyme (GarL, ) 2-dehydro-3-deoxyglucarate aldolase acts in the catabolism of several sugars including D-galactarate, D-glucarate and L-idarate. In fact, 5-dehydro-4-deoxy-D-glucarate aldolase is a synonym for this enzyme as it is unclear in the literature whether the enzyme acts on only one of these or, as seems likely, has no preference. (Despite the apparent large difference in substrate stucture indicated by their names, 2-DH-3DO- and 5-DH-4DO-glucarate differ only by the chirality of most central hydroxyl-bearing carbon and is alternately named 2-DH-3DO-galactarate.) The reported product of D-galactarate dehydratase (4.2.1.42) is the 5DH-4DO-glucarate isomer and this enzyme is found proximal to the aldolase in many genomes (GenProp0714) where no epimerase is known. Similarly, the product of D-glucarate dehydratase (4.2.1.40) is again the 5-DH-4DO isomer, so the provenance of the 2-DH-3DO-glucarate isomer for which
Probab=70.66 E-value=55 Score=28.88 Aligned_cols=97 Identities=11% Similarity=0.060 Sum_probs=59.8
Q ss_pred HhcCCeeeEee-cCCChhhHHHHHHhcCCCCcccccccCcccch--HHHHHHHHHcCceEEEecCCCCCCCCCCccccCC
Q 021264 147 YDSGKARAIGV-CNFSTKKLGDLLEIARVPPAVNQVECHSSWQQ--QKLHAFCKSKGVHLSGYSPLGSPGTRWIKSDVLR 223 (315)
Q Consensus 147 k~~GkIr~iGv-S~~~~~~l~~~~~~~~~~~~~~q~~~n~~~~~--~~~~~~~~~~gi~v~~~~pl~~gg~~~~~~~~~~ 223 (315)
-++|+. -+|+ .+.....+.+++...++++.++=.+=.+++.. ..++..++..|+..+..-|-..
T Consensus 7 l~~g~~-~~G~~~~~~sp~~~e~~a~~G~D~v~iD~EHg~~~~~~~~~~~~a~~~~g~~~~VRvp~~~------------ 73 (249)
T TIGR03239 7 LLARET-LIGCWSALGNPITTEVLGLAGFDWLLLDGEHAPNDVLTFIPQLMALKGSASAPVVRPPWNE------------ 73 (249)
T ss_pred HHcCCc-eEEEEEcCCCcHHHHHHHhcCCCEEEEecccCCCCHHHHHHHHHHHhhcCCCcEEECCCCC------------
Confidence 344654 3443 33333455556666777666666666666655 5788889999998888766632
Q ss_pred chHHHHHHHHhCCCHHHHHHHHHhhcC--CeeecCCCCHHHHHHhhcccCc
Q 021264 224 HPVLKTAAEKLGKTPAQVALRWGLQMG--HSVLPKSTNEARIKENFDIFDW 272 (315)
Q Consensus 224 ~~~l~~la~~~~~s~aq~al~~~l~~~--~~~i~G~~~~~~l~~nl~a~~~ 272 (315)
...++.+|..| ..++|-.+|.++.++.+++..+
T Consensus 74 ----------------~~~i~r~LD~Ga~gIivP~v~taeea~~~v~a~ky 108 (249)
T TIGR03239 74 ----------------PVIIKRLLDIGFYNFLIPFVESAEEAERAVAATRY 108 (249)
T ss_pred ----------------HHHHHHHhcCCCCEEEecCcCCHHHHHHHHHHcCC
Confidence 12345556656 3556677777777777766554
No 35
>PF03102 NeuB: NeuB family; InterPro: IPR013132 NeuB is the prokaryotic N-acetylneuraminic acid synthase (Neu5Ac). It catalyses the direct formation of Neu5Ac (the most common sialic acid) by condensation of phosphoenolpyruvate (PEP) and N-acetylmannosamine (ManNAc). This reaction has only been observed in prokaryotes; eukaryotes synthesise the 9-phosphate form, Neu5Ac-9-P, and utilise ManNAc-6-P instead of ManNAc. Such eukaryotic enzymes are not present in this family []. This family also contains SpsE spore coat polysaccharide biosynthesis proteins.; GO: 0016051 carbohydrate biosynthetic process; PDB: 3G8R_B 1XUU_A 1XUZ_A 3CM4_A 2ZDR_A 1VLI_A 2WQP_A.
Probab=70.03 E-value=37 Score=29.86 Aligned_cols=120 Identities=9% Similarity=0.082 Sum_probs=63.7
Q ss_pred cCCcchHHHHHHHHHHhCCcEEecCCCCCCHHHHH-----------------HHHHHhhhcCCcCCCCeEEeeccCCCCC
Q 021264 25 QADPGIVGNAVDVAIKAGYRHIDCARLYLNEKEIG-----------------FVLKKLFEDGVVKREDLWITSKLWCTDL 87 (315)
Q Consensus 25 ~~~~~~~~~~l~~A~~~Gi~~~DtA~~Ygse~~lG-----------------~~l~~~~~~~~~~R~~~~i~tK~~~~~~ 87 (315)
.++.++..++.+.|-+.||.+|=|...-.+-..+- ..|+.. ++ ....++|+|=..
T Consensus 52 el~~e~~~~L~~~~~~~gi~f~stpfd~~s~d~l~~~~~~~~KIaS~dl~n~~lL~~~-A~---tgkPvIlSTG~s---- 123 (241)
T PF03102_consen 52 ELSEEQHKELFEYCKELGIDFFSTPFDEESVDFLEELGVPAYKIASGDLTNLPLLEYI-AK---TGKPVILSTGMS---- 123 (241)
T ss_dssp SS-HHHHHHHHHHHHHTT-EEEEEE-SHHHHHHHHHHT-SEEEE-GGGTT-HHHHHHH-HT---T-S-EEEE-TT-----
T ss_pred cCCHHHHHHHHHHHHHcCCEEEECCCCHHHHHHHHHcCCCEEEeccccccCHHHHHHH-HH---hCCcEEEECCCC----
Confidence 37889999999999999999987753321111110 112221 11 245577777652
Q ss_pred CCCcHHHHHHHHHHhc-CCCccceEeeecCCCccCCCCCCCCCCCCCCCHHH-HHHHHHHHHhcCCeeeEeecCCChhhH
Q 021264 88 APKDVPEALDNTLQDL-QIDYVDLYLIHWPARMKKGSVGFNPENLLPLDIPS-TWRAMEALYDSGKARAIGVCNFSTKKL 165 (315)
Q Consensus 88 ~~~~i~~~ve~sL~~L-g~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~-~~~~L~~lk~~GkIr~iGvS~~~~~~l 165 (315)
-...+++.++.+ ....-++.++|....+. .+.++ -+..+..|++.=- --||+|.|+....
T Consensus 124 ----tl~EI~~Av~~~~~~~~~~l~llHC~s~YP-------------~~~e~~NL~~i~~L~~~f~-~~vG~SDHt~g~~ 185 (241)
T PF03102_consen 124 ----TLEEIERAVEVLREAGNEDLVLLHCVSSYP-------------TPPEDVNLRVIPTLKERFG-VPVGYSDHTDGIE 185 (241)
T ss_dssp -----HHHHHHHHHHHHHHCT--EEEEEE-SSSS---------------GGG--TTHHHHHHHHST-SEEEEEE-SSSSH
T ss_pred ----CHHHHHHHHHHHHhcCCCCEEEEecCCCCC-------------CChHHcChHHHHHHHHhcC-CCEEeCCCCCCcH
Confidence 245555555555 22357999999886653 23333 3677777775422 4689999998655
Q ss_pred HHHHH
Q 021264 166 GDLLE 170 (315)
Q Consensus 166 ~~~~~ 170 (315)
.-++.
T Consensus 186 ~~~~A 190 (241)
T PF03102_consen 186 APIAA 190 (241)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 44433
No 36
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily. The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".
Probab=69.84 E-value=31 Score=30.25 Aligned_cols=99 Identities=12% Similarity=0.143 Sum_probs=63.6
Q ss_pred HHHHHHHHHHhcCCCccceEeeecCCCccCCCCCCCCCCCCCCCHHHHHHHHHHHHhcC-CeeeEeecCCChhhHHHHHH
Q 021264 92 VPEALDNTLQDLQIDYVDLYLIHWPARMKKGSVGFNPENLLPLDIPSTWRAMEALYDSG-KARAIGVCNFSTKKLGDLLE 170 (315)
Q Consensus 92 i~~~ve~sL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~L~~lk~~G-kIr~iGvS~~~~~~l~~~~~ 170 (315)
-+..+-+.|.++|+++|.+-..-.+... ....+.++.++++++.+ .++...++......++.+.+
T Consensus 20 ~~~~i~~~L~~~GV~~IEvg~~~~~~~~--------------p~~~~~~~~i~~l~~~~~~~~~~~l~~~~~~~i~~a~~ 85 (265)
T cd03174 20 DKLEIAEALDEAGVDSIEVGSGASPKAV--------------PQMEDDWEVLRAIRKLVPNVKLQALVRNREKGIERALE 85 (265)
T ss_pred HHHHHHHHHHHcCCCEEEeccCcCcccc--------------ccCCCHHHHHHHHHhccCCcEEEEEccCchhhHHHHHh
Confidence 4456666788999999988865433211 11245688888898888 57766777665666666666
Q ss_pred hcCCCCcccccccCccc----------------chHHHHHHHHHcCceEEEec
Q 021264 171 IARVPPAVNQVECHSSW----------------QQQKLHAFCKSKGVHLSGYS 207 (315)
Q Consensus 171 ~~~~~~~~~q~~~n~~~----------------~~~~~~~~~~~~gi~v~~~~ 207 (315)
.. .+.+++.+...+ .-.+.++.+++.|+.+...-
T Consensus 86 ~g---~~~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~v~~~~ 135 (265)
T cd03174 86 AG---VDEVRIFDSASETHSRKNLNKSREEDLENAEEAIEAAKEAGLEVEGSL 135 (265)
T ss_pred CC---cCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEE
Confidence 42 345555543331 11467888999998877755
No 37
>COG2089 SpsE Sialic acid synthase [Cell envelope biogenesis, outer membrane]
Probab=69.69 E-value=64 Score=29.66 Aligned_cols=120 Identities=13% Similarity=0.107 Sum_probs=70.9
Q ss_pred CCcchHHHHHHHHHHhCCcEEecCCCCCCHHHHH-----------------HHHHHhhhcCCcCCCCeEEeeccCCCCCC
Q 021264 26 ADPGIVGNAVDVAIKAGYRHIDCARLYLNEKEIG-----------------FVLKKLFEDGVVKREDLWITSKLWCTDLA 88 (315)
Q Consensus 26 ~~~~~~~~~l~~A~~~Gi~~~DtA~~Ygse~~lG-----------------~~l~~~~~~~~~~R~~~~i~tK~~~~~~~ 88 (315)
++.+.-..+.+.|-+.|+-+|-|--.+.+-..+- ..|+...+ .-++++++|-.. +
T Consensus 87 ~p~e~~~~Lke~a~~~Gi~~~SSPfd~~svd~l~~~~~~ayKIaS~E~~~~plik~iA~----~~kPiIlSTGma----~ 158 (347)
T COG2089 87 TPLEWHAQLKEYARKRGIIFFSSPFDLTAVDLLESLNPPAYKIASGEINDLPLIKYIAK----KGKPIILSTGMA----T 158 (347)
T ss_pred CCHHHHHHHHHHHHHcCeEEEecCCCHHHHHHHHhcCCCeEEecCccccChHHHHHHHh----cCCCEEEEcccc----c
Confidence 6777778899999999999987654433211110 11222111 134688887762 2
Q ss_pred CCcHHHHHHHHHHhcCCCccceEeeecCCCccCCCCCCCCCCCCCCCHHHH-HHHHHHHHhcCCeeeEeecCCChhhHHH
Q 021264 89 PKDVPEALDNTLQDLQIDYVDLYLIHWPARMKKGSVGFNPENLLPLDIPST-WRAMEALYDSGKARAIGVCNFSTKKLGD 167 (315)
Q Consensus 89 ~~~i~~~ve~sL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~-~~~L~~lk~~GkIr~iGvS~~~~~~l~~ 167 (315)
-+.+.++++...+ -|. .|+.+||....+. .+.+++ +.++..|++.= ---||+|.|+...+.-
T Consensus 159 ~~ei~~av~~~r~-~g~--~~i~LLhC~s~YP-------------ap~ed~NL~~i~~l~~~F-n~~vGlSDHT~g~~a~ 221 (347)
T COG2089 159 IEEIEEAVAILRE-NGN--PDIALLHCTSAYP-------------APFEDVNLKAIPKLAEAF-NAIVGLSDHTLGILAP 221 (347)
T ss_pred HHHHHHHHHHHHh-cCC--CCeEEEEecCCCC-------------CCHHHhhHHHHHHHHHHh-CCccccccCccchhHH
Confidence 3345555544333 333 4999999876542 334443 66666666553 2359999999886654
Q ss_pred HHH
Q 021264 168 LLE 170 (315)
Q Consensus 168 ~~~ 170 (315)
+..
T Consensus 222 l~A 224 (347)
T COG2089 222 LAA 224 (347)
T ss_pred HHH
Confidence 444
No 38
>TIGR00216 ispH_lytB (E)-4-hydroxy-3-methyl-but-2-enyl pyrophosphate reductase (IPP and DMAPP forming). Escherichia coli LytB protein had been found to regulate the activity of RelA (guanosine 3',5'-bispyrophosphate synthetase I), which in turn controls the level of a regulatory metabolite. It is involved in penicillin tolerance and the stringent response.
Probab=69.09 E-value=39 Score=30.45 Aligned_cols=116 Identities=11% Similarity=0.096 Sum_probs=74.1
Q ss_pred HHHHHHHhcCCeeeEeecCCChhhHHHHHHhcCCCC--cccccccCccc----chHHHHHHHHHcCceEEEecCCCCCCC
Q 021264 141 RAMEALYDSGKARAIGVCNFSTKKLGDLLEIARVPP--AVNQVECHSSW----QQQKLHAFCKSKGVHLSGYSPLGSPGT 214 (315)
Q Consensus 141 ~~L~~lk~~GkIr~iGvS~~~~~~l~~~~~~~~~~~--~~~q~~~n~~~----~~~~~~~~~~~~gi~v~~~~pl~~gg~ 214 (315)
+.++.|....++..+-=++.+.+...++.+...-.+ .-..+.=.+++ |+..+.+++++-++-++.-+.-.+
T Consensus 145 ~d~~~l~~~~~v~vvsQTT~~~~~~~~i~~~l~~~~~~~~~~~~nTIC~AT~~RQ~a~~~la~~vD~miVVGg~nSs--- 221 (280)
T TIGR00216 145 EDLENFKVEDLLGVVSQTTLSQEDTKEIVAELKARVPQKEVPVFNTICYATQNRQDAVKELAPEVDLMIVIGGKNSS--- 221 (280)
T ss_pred HHHHhCCCCCcEEEEEcCCCcHHHHHHHHHHHHHhCCCcCCCCCCCcccccHHHHHHHHHHHhhCCEEEEECCCCCc---
Confidence 445555555666666666777777666655432111 12222222222 336788889988877776433322
Q ss_pred CCCccccCCchHHHHHHHHhCC------CHHHHHHHHHhhcC-CeeecCCCCHHHHHHhh
Q 021264 215 RWIKSDVLRHPVLKTAAEKLGK------TPAQVALRWGLQMG-HSVLPKSTNEARIKENF 267 (315)
Q Consensus 215 ~~~~~~~~~~~~l~~la~~~~~------s~aq~al~~~l~~~-~~~i~G~~~~~~l~~nl 267 (315)
....|.++|++.+. ++.++-..|..... +.+..|+|+|+.+-+.+
T Consensus 222 --------NT~rL~ei~~~~~~~t~~Ie~~~el~~~~l~~~~~VGiTAGASTP~~li~eV 273 (280)
T TIGR00216 222 --------NTTRLYEIAEEHGPPSYLIETAEELPEEWLKGVKVVGITAGASTPDWIIEEV 273 (280)
T ss_pred --------hHHHHHHHHHHhCCCEEEECChHHCCHHHhCCCCEEEEEecCCCCHHHHHHH
Confidence 23578999999873 67889899988665 67889999999775543
No 39
>cd03316 MR_like Mandelate racemase (MR)-like subfamily of the enolase superfamily. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. Members of the MR subgroup are mandelate racemase, D-glucarate/L-idarate dehydratase (GlucD), D-altronate/D-mannonate dehydratase , D-galactonate dehydratase (GalD) , D-gluconate dehydratase (GlcD), and L-rhamnonate dehydratase (RhamD).
Probab=69.03 E-value=97 Score=28.62 Aligned_cols=149 Identities=13% Similarity=0.154 Sum_probs=88.6
Q ss_pred CcchHHHHHHHHHHhCCcEEecC--CCCC----CHHHH--HHHHHHhhhcCCcCCCCeEEeeccCCCCCCCCcHHHHHHH
Q 021264 27 DPGIVGNAVDVAIKAGYRHIDCA--RLYL----NEKEI--GFVLKKLFEDGVVKREDLWITSKLWCTDLAPKDVPEALDN 98 (315)
Q Consensus 27 ~~~~~~~~l~~A~~~Gi~~~DtA--~~Yg----se~~l--G~~l~~~~~~~~~~R~~~~i~tK~~~~~~~~~~i~~~ve~ 98 (315)
+.++..+.++.+.+.|++.|-.- ..|. -+..+ =+++++. -.+++.|....+. ..+. +...+
T Consensus 139 ~~~~~~~~a~~~~~~Gf~~~Kik~g~~~~~~~~~~~d~~~v~~ir~~------~g~~~~l~vDaN~-~~~~----~~a~~ 207 (357)
T cd03316 139 SPEELAEEAKRAVAEGFTAVKLKVGGPDSGGEDLREDLARVRAVREA------VGPDVDLMVDANG-RWDL----AEAIR 207 (357)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEcCCCCCcchHHHHHHHHHHHHHHHh------hCCCCEEEEECCC-CCCH----HHHHH
Confidence 45667777888889999998753 2331 11111 1234443 1234555555521 2222 23334
Q ss_pred HHHhcCCCccceEeeecCCCccCCCCCCCCCCCCCCCHHHHHHHHHHHHhcCCee-eEeecCCChhhHHHHHHhcCCCCc
Q 021264 99 TLQDLQIDYVDLYLIHWPARMKKGSVGFNPENLLPLDIPSTWRAMEALYDSGKAR-AIGVCNFSTKKLGDLLEIARVPPA 177 (315)
Q Consensus 99 sL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~L~~lk~~GkIr-~iGvS~~~~~~l~~~~~~~~~~~~ 177 (315)
-+++|. ..++.+++.|-.. +.++.+.+|++.-.|. ..|=|.++++.+.++++... .+
T Consensus 208 ~~~~l~--~~~i~~iEqP~~~------------------~~~~~~~~l~~~~~ipi~~dE~~~~~~~~~~~i~~~~--~d 265 (357)
T cd03316 208 LARALE--EYDLFWFEEPVPP------------------DDLEGLARLRQATSVPIAAGENLYTRWEFRDLLEAGA--VD 265 (357)
T ss_pred HHHHhC--ccCCCeEcCCCCc------------------cCHHHHHHHHHhCCCCEEeccccccHHHHHHHHHhCC--CC
Confidence 444553 2455666665431 2366677888775555 44555678888888887643 47
Q ss_pred ccccccCccc---chHHHHHHHHHcCceEEEecC
Q 021264 178 VNQVECHSSW---QQQKLHAFCKSKGVHLSGYSP 208 (315)
Q Consensus 178 ~~q~~~n~~~---~~~~~~~~~~~~gi~v~~~~p 208 (315)
++|+....+- +..++...|+.+|+.++.++.
T Consensus 266 ~v~~k~~~~GGi~~~~~i~~~a~~~g~~~~~~~~ 299 (357)
T cd03316 266 IIQPDVTKVGGITEAKKIAALAEAHGVRVAPHGA 299 (357)
T ss_pred EEecCccccCCHHHHHHHHHHHHHcCCeEeccCC
Confidence 7887765543 236899999999999888753
No 40
>KOG1579 consensus Homocysteine S-methyltransferase [Amino acid transport and metabolism]
Probab=68.45 E-value=96 Score=28.37 Aligned_cols=220 Identities=15% Similarity=0.131 Sum_probs=112.2
Q ss_pred cchHHHHHHHHHHhCCcEEecCCCCCC---------HHHHHHHHHHhhhcCCcCCCCe-----EEeeccCCC--------
Q 021264 28 PGIVGNAVDVAIKAGYRHIDCARLYLN---------EKEIGFVLKKLFEDGVVKREDL-----WITSKLWCT-------- 85 (315)
Q Consensus 28 ~~~~~~~l~~A~~~Gi~~~DtA~~Ygs---------e~~lG~~l~~~~~~~~~~R~~~-----~i~tK~~~~-------- 85 (315)
++.+..+=...+++|.+.+-|...+.+ ++..-+..+..++--...|+++ +|+.-+|++
T Consensus 52 Pe~V~~~H~efL~aGadIi~T~Tyqas~~~~~~~~~~~~~~el~~~s~~~a~~Are~~~~~~~~v~gsiGp~~A~l~~g~ 131 (317)
T KOG1579|consen 52 PEAVEQVHKEFLRAGADIISTNTYQASSDGFEEYVEEEELIELYEKSVELADLARERLGEETGYVAGSIGPYGATLADGS 131 (317)
T ss_pred hHHHHHHHHHHHHccCcEEEEeeeeecchHHhhhhhhHHHHHHHHHHHHHHHHHHHHhccccceeeeecccccceecCCc
Confidence 455666777889999999999876652 1111122222111000123333 444444331
Q ss_pred --------CCCCCcHHHHHHHHHHhcCCCccceEeeecCCCccCCCCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeeEee
Q 021264 86 --------DLAPKDVPEALDNTLQDLQIDYVDLYLIHWPARMKKGSVGFNPENLLPLDIPSTWRAMEALYDSGKARAIGV 157 (315)
Q Consensus 86 --------~~~~~~i~~~ve~sL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~L~~lk~~GkIr~iGv 157 (315)
..+.+.+.+...+.|+.+.-.-+|++.+...... .....+++.|+++. -.+=-+|++
T Consensus 132 eytg~Y~~~~~~~el~~~~k~qle~~~~~gvD~L~fETip~~--------------~EA~a~l~~l~~~~-~~~p~~is~ 196 (317)
T KOG1579|consen 132 EYTGIYGDNVEFEELYDFFKQQLEVFLEAGVDLLAFETIPNV--------------AEAKAALELLQELG-PSKPFWISF 196 (317)
T ss_pred ccccccccccCHHHHHHHHHHHHHHHHhCCCCEEEEeecCCH--------------HHHHHHHHHHHhcC-CCCcEEEEE
Confidence 1233557777788888877777999998764332 22333445555541 222236676
Q ss_pred cCCC------hhhHHHHHHhcCCC--CcccccccCcccchH-HHHHH-HHHcCceEEEecCCCCCCCCCCccccCCchHH
Q 021264 158 CNFS------TKKLGDLLEIARVP--PAVNQVECHSSWQQQ-KLHAF-CKSKGVHLSGYSPLGSPGTRWIKSDVLRHPVL 227 (315)
Q Consensus 158 S~~~------~~~l~~~~~~~~~~--~~~~q~~~n~~~~~~-~~~~~-~~~~gi~v~~~~pl~~gg~~~~~~~~~~~~~l 227 (315)
+..+ ...+++++....-. +..+=+++....... .+.+. ++-.++.+++| |.++.-.-..+......
T Consensus 197 t~~d~g~l~~G~t~e~~~~~~~~~~~~~~IGvNC~~~~~~~~~~~~L~~~~~~~~llvY-PNsGe~yd~~~g~~~~~--- 272 (317)
T KOG1579|consen 197 TIKDEGRLRSGETGEEAAQLLKDGINLLGIGVNCVSPNFVEPLLKELMAKLTKIPLLVY-PNSGEVYDNEKGGWIPT--- 272 (317)
T ss_pred EecCCCcccCCCcHHHHHHHhccCCceEEEEeccCCchhccHHHHHHhhccCCCeEEEe-cCCCCCCccccCcccCC---
Confidence 6544 34556666554332 344444443333322 22333 35568999998 66442111111111110
Q ss_pred HHHHHHhCCCHHHHHHHHHhhcCCeeecCC--CCHHHHHHhhcccC
Q 021264 228 KTAAEKLGKTPAQVALRWGLQMGHSVLPKS--TNEARIKENFDIFD 271 (315)
Q Consensus 228 ~~la~~~~~s~aq~al~~~l~~~~~~i~G~--~~~~~l~~nl~a~~ 271 (315)
..+..+-+--.+...+.++.+|=|| ++|.|+++.-++..
T Consensus 273 -----~~~~~~~~~~~~~~~~lGv~iIGGCCrt~P~~I~aI~e~v~ 313 (317)
T KOG1579|consen 273 -----PFGLEPWQTYVKKAIDLGVRIIGGCCRTTPKHIRAIAEAVK 313 (317)
T ss_pred -----CcccchHHHHHHHHHhcccceeCcccCCChHHHHHHHHHhh
Confidence 1123332333334444467777666 88888887766543
No 41
>PRK05692 hydroxymethylglutaryl-CoA lyase; Provisional
Probab=67.79 E-value=32 Score=31.04 Aligned_cols=98 Identities=13% Similarity=0.147 Sum_probs=58.7
Q ss_pred HHHHHHHHHHhcCCCccceEeeecCCCccCCCCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeeEeecCCChhhHHHHHHh
Q 021264 92 VPEALDNTLQDLQIDYVDLYLIHWPARMKKGSVGFNPENLLPLDIPSTWRAMEALYDSGKARAIGVCNFSTKKLGDLLEI 171 (315)
Q Consensus 92 i~~~ve~sL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~L~~lk~~GkIr~iGvS~~~~~~l~~~~~~ 171 (315)
-+..+-+.|.++|+++|.+-.++.|.... ...+.++.+..+.+...++...+. .+...++.+++.
T Consensus 27 ~k~~ia~~L~~~Gv~~IEvgsf~~p~~~p--------------~~~d~~e~~~~l~~~~~~~~~~l~-~~~~~ie~A~~~ 91 (287)
T PRK05692 27 DKIALIDRLSAAGLSYIEVASFVSPKWVP--------------QMADAAEVMAGIQRRPGVTYAALT-PNLKGLEAALAA 91 (287)
T ss_pred HHHHHHHHHHHcCCCEEEeCCCcCccccc--------------ccccHHHHHHhhhccCCCeEEEEe-cCHHHHHHHHHc
Confidence 46778888999999999998655554221 112235666666544445555554 467788877764
Q ss_pred cCCCCcccccccCcccc--------------hHHHHHHHHHcCceEEE
Q 021264 172 ARVPPAVNQVECHSSWQ--------------QQKLHAFCKSKGVHLSG 205 (315)
Q Consensus 172 ~~~~~~~~q~~~n~~~~--------------~~~~~~~~~~~gi~v~~ 205 (315)
. .+...+-++.|..+. -.+.+++++++|+.+.+
T Consensus 92 g-~~~v~i~~~~s~~~~~~n~~~~~~e~l~~~~~~v~~ak~~g~~v~~ 138 (287)
T PRK05692 92 G-ADEVAVFASASEAFSQKNINCSIAESLERFEPVAEAAKQAGVRVRG 138 (287)
T ss_pred C-CCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCEEEE
Confidence 2 222222223332211 14588999999998864
No 42
>COG1140 NarY Nitrate reductase beta subunit [Energy production and conversion]
Probab=66.58 E-value=4.1 Score=37.83 Aligned_cols=53 Identities=9% Similarity=0.161 Sum_probs=33.0
Q ss_pred hcCCeeeEeecCCChhhHHHHHHhcCCCCcccccccCcc-cc-hHHHHHHHHHcCc
Q 021264 148 DSGKARAIGVCNFSTKKLGDLLEIARVPPAVNQVECHSS-WQ-QQKLHAFCKSKGV 201 (315)
Q Consensus 148 ~~GkIr~iGvS~~~~~~l~~~~~~~~~~~~~~q~~~n~~-~~-~~~~~~~~~~~gi 201 (315)
--|+||++||--++.+.+.++...... -++.+.+..++ ++ ++.+++.|++.||
T Consensus 262 CVGriRYlGVlLYDaDrv~eaAs~~~e-~dly~~Q~~ifLDP~DP~Vi~~A~k~Gi 316 (513)
T COG1140 262 CVGRIRYLGVLLYDADRVEEAASTENE-KDLYERQLDVFLDPHDPAVIEQARKDGI 316 (513)
T ss_pred hhcceeeeeeeeecHHHHHHhhcCccH-HHHHHHHHhhhcCCCCHHHHHHHHHcCC
Confidence 349999999999999999888764332 12222222222 22 2566666666666
No 43
>PRK01045 ispH 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Reviewed
Probab=66.27 E-value=55 Score=29.78 Aligned_cols=116 Identities=12% Similarity=0.134 Sum_probs=72.5
Q ss_pred HHHHHH--HhcCCeeeEeecCCChhhHHHHHHhcCCCCccccc-cc-Cccc----chHHHHHHHHHcCceEEEecCCCCC
Q 021264 141 RAMEAL--YDSGKARAIGVCNFSTKKLGDLLEIARVPPAVNQV-EC-HSSW----QQQKLHAFCKSKGVHLSGYSPLGSP 212 (315)
Q Consensus 141 ~~L~~l--k~~GkIr~iGvS~~~~~~l~~~~~~~~~~~~~~q~-~~-n~~~----~~~~~~~~~~~~gi~v~~~~pl~~g 212 (315)
+.++.| ....++..+.=++.+.+...++.+...-.+.-+.+ .+ .++. |+..+.+++++.++-++.-+.-..
T Consensus 145 ~e~~~l~~~~~~~v~vvsQTT~~~~~~~~i~~~l~~~~~~~~v~~~nTIC~aT~~RQ~a~~~La~~vD~miVVGg~~Ss- 223 (298)
T PRK01045 145 EDVAKLEVKDPDKLALVTQTTLSVDDTAEIIAALKERFPEIQGPPKDDICYATQNRQEAVKELAPQADLVIVVGSKNSS- 223 (298)
T ss_pred HHHhhcccCCCCcEEEEEcCCCcHHHHHHHHHHHHHhCcCcccCCCCCcchhhHHHHHHHHHHHhhCCEEEEECCCCCc-
Confidence 334555 33356666666777777776666543321111111 11 2222 336788889988877776444322
Q ss_pred CCCCCccccCCchHHHHHHHHhCC------CHHHHHHHHHhhcC-CeeecCCCCHHHHHHhh
Q 021264 213 GTRWIKSDVLRHPVLKTAAEKLGK------TPAQVALRWGLQMG-HSVLPKSTNEARIKENF 267 (315)
Q Consensus 213 g~~~~~~~~~~~~~l~~la~~~~~------s~aq~al~~~l~~~-~~~i~G~~~~~~l~~nl 267 (315)
.-..|.++|++.+. ++.++-..|..... +.+..|+|+|+.+-+.+
T Consensus 224 ----------NT~kL~~i~~~~~~~t~~Ie~~~el~~~~l~~~~~VGitaGASTP~~li~eV 275 (298)
T PRK01045 224 ----------NSNRLREVAEEAGAPAYLIDDASEIDPEWFKGVKTVGVTAGASAPEWLVQEV 275 (298)
T ss_pred ----------cHHHHHHHHHHHCCCEEEECChHHCcHHHhcCCCEEEEEecCCCCHHHHHHH
Confidence 23478899998873 67889999997655 67889999999765443
No 44
>PRK07535 methyltetrahydrofolate:corrinoid/iron-sulfur protein methyltransferase; Validated
Probab=65.94 E-value=58 Score=28.98 Aligned_cols=101 Identities=12% Similarity=0.110 Sum_probs=63.1
Q ss_pred CCcHHHHHHHHHHhcCCCccceEeeecCCCccCCCCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeeEeecCCChhhHHHH
Q 021264 89 PKDVPEALDNTLQDLQIDYVDLYLIHWPARMKKGSVGFNPENLLPLDIPSTWRAMEALYDSGKARAIGVCNFSTKKLGDL 168 (315)
Q Consensus 89 ~~~i~~~ve~sL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~L~~lk~~GkIr~iGvS~~~~~~l~~~ 168 (315)
++.+.+...+. ..-|.+.||+=.= +.. . ...+.+...++.+++.-.+ -|.+-+++++.++++
T Consensus 24 ~~~i~~~A~~~-~~~GAdiIDVg~~--~~~---~-----------eE~~r~~~~v~~l~~~~~~-plsIDT~~~~v~eaa 85 (261)
T PRK07535 24 AAFIQKLALKQ-AEAGADYLDVNAG--TAV---E-----------EEPETMEWLVETVQEVVDV-PLCIDSPNPAAIEAG 85 (261)
T ss_pred HHHHHHHHHHH-HHCCCCEEEECCC--CCc---h-----------hHHHHHHHHHHHHHHhCCC-CEEEeCCCHHHHHHH
Confidence 33444444443 3668889998642 111 0 2244566667777654333 489999999999999
Q ss_pred HHhcCCCCcccccccCcccchHHHHHHHHHcCceEEEecC
Q 021264 169 LEIARVPPAVNQVECHSSWQQQKLHAFCKSKGVHLSGYSP 208 (315)
Q Consensus 169 ~~~~~~~~~~~q~~~n~~~~~~~~~~~~~~~gi~v~~~~p 208 (315)
++.....+.+|-+.... .+.+++++.++++|+.++.+.-
T Consensus 86 L~~~~G~~iINsIs~~~-~~~~~~~~l~~~~g~~vv~m~~ 124 (261)
T PRK07535 86 LKVAKGPPLINSVSAEG-EKLEVVLPLVKKYNAPVVALTM 124 (261)
T ss_pred HHhCCCCCEEEeCCCCC-ccCHHHHHHHHHhCCCEEEEec
Confidence 99754434444433321 2246789999999999998653
No 45
>COG0761 lytB 4-Hydroxy-3-methylbut-2-enyl diphosphate reductase IspH [Lipid metabolism]
Probab=65.34 E-value=43 Score=30.15 Aligned_cols=121 Identities=11% Similarity=0.082 Sum_probs=78.2
Q ss_pred HHHHHHHHHHHH--hcCCeeeEeecCCChhhHHHHHHhcCCCCccccccc-C-cc----cchHHHHHHHHHcCceEEEec
Q 021264 136 IPSTWRAMEALY--DSGKARAIGVCNFSTKKLGDLLEIARVPPAVNQVEC-H-SS----WQQQKLHAFCKSKGVHLSGYS 207 (315)
Q Consensus 136 ~~~~~~~L~~lk--~~GkIr~iGvS~~~~~~l~~~~~~~~~~~~~~q~~~-n-~~----~~~~~~~~~~~~~gi~v~~~~ 207 (315)
.-+..+.++.|. .+.++.++-=.+.+.+...++.......+-.+|.+. | ++ +|+..+.+.+.+-++-++.-+
T Consensus 142 lve~~~d~~~l~~~~~~~l~~~tQTTls~ddt~~Iv~~l~~r~p~~~~~~~~~ICyAT~nRQ~Avk~la~~~Dl~iVVG~ 221 (294)
T COG0761 142 LVESVEDVANLKVQLPDKLAFVTQTTLSVDDTAEIVAALKERFPKIEVPPFNDICYATQNRQDAVKELAPEVDLVIVVGS 221 (294)
T ss_pred EEecHHHHHhcccCCcccEEEEeeeecCHHHHHHHHHHHHHhCccccCCcccccchhhhhHHHHHHHHhhcCCEEEEECC
Confidence 345566666664 333555555555666666655554432222222222 1 22 244678888999888888876
Q ss_pred CCCCCCCCCCccccCCchHHHHHHHHhCC------CHHHHHHHHHhhcC-CeeecCCCCHHHHHHhh
Q 021264 208 PLGSPGTRWIKSDVLRHPVLKTAAEKLGK------TPAQVALRWGLQMG-HSVLPKSTNEARIKENF 267 (315)
Q Consensus 208 pl~~gg~~~~~~~~~~~~~l~~la~~~~~------s~aq~al~~~l~~~-~~~i~G~~~~~~l~~nl 267 (315)
+-... ...|.++|++.|. ++.++-..|..... +.+-.|+|+|+-+-+++
T Consensus 222 ~nSSN-----------s~rL~eiA~~~g~~aylId~~~ei~~~w~~~~~~VGvTAGAStPd~lV~~V 277 (294)
T COG0761 222 KNSSN-----------SNRLAEIAKRHGKPAYLIDDAEEIDPEWLKGVKTVGVTAGASTPDWLVQEV 277 (294)
T ss_pred CCCcc-----------HHHHHHHHHHhCCCeEEeCChHhCCHHHhcCccEEEEecCCCCCHHHHHHH
Confidence 66442 4579999999886 57888888988766 67779999999876665
No 46
>PRK12360 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Provisional
Probab=65.07 E-value=57 Score=29.40 Aligned_cols=114 Identities=14% Similarity=0.052 Sum_probs=70.8
Q ss_pred HHHHHhcCCeeeEeecCCChhhHHHHHHhcCCCCcccccccCcc----cchHHHHHHHHHcCceEEEecCCCCCCCCCCc
Q 021264 143 MEALYDSGKARAIGVCNFSTKKLGDLLEIARVPPAVNQVECHSS----WQQQKLHAFCKSKGVHLSGYSPLGSPGTRWIK 218 (315)
Q Consensus 143 L~~lk~~GkIr~iGvS~~~~~~l~~~~~~~~~~~~~~q~~~n~~----~~~~~~~~~~~~~gi~v~~~~pl~~gg~~~~~ 218 (315)
++.|.-..++..+-=++.+.+...++.+...-.+.-+.+.=.++ .|+..+.+++++-++-++.-+.-..
T Consensus 150 ~~~l~~~~kv~~vsQTT~~~~~~~~iv~~l~~~~~~~~v~~TIC~aT~~RQ~a~~~La~~vD~miVVGg~~Ss------- 222 (281)
T PRK12360 150 VENIPFLDKACVVAQTTIIPELWEDILNVIKLKSKELVFFNTICSATKKRQESAKELSKEVDVMIVIGGKHSS------- 222 (281)
T ss_pred HhhCccccCEEEEECCCCcHHHHHHHHHHHHHhCcccccCCCcchhhhhHHHHHHHHHHhCCEEEEecCCCCc-------
Confidence 34443335555565666777766666554332111112211222 2336788889888887777444322
Q ss_pred cccCCchHHHHHHHHhCC------CHHHHHHHHHhhcC-CeeecCCCCHHHHHHhh
Q 021264 219 SDVLRHPVLKTAAEKLGK------TPAQVALRWGLQMG-HSVLPKSTNEARIKENF 267 (315)
Q Consensus 219 ~~~~~~~~l~~la~~~~~------s~aq~al~~~l~~~-~~~i~G~~~~~~l~~nl 267 (315)
....|.++|.+.+. ++.++--.|..... +.+..|+|+|+.+-+.+
T Consensus 223 ----NT~rL~eia~~~~~~t~~Ie~~~el~~~~~~~~~~VGitaGASTP~~li~eV 274 (281)
T PRK12360 223 ----NTQKLVKICEKNCPNTFHIETADELDLEMLKDYKIIGITAGASTPDWIIEEV 274 (281)
T ss_pred ----cHHHHHHHHHHHCCCEEEECChHHCCHHHhCCCCEEEEEccCCCCHHHHHHH
Confidence 23478899998874 67888889998766 67889999999775543
No 47
>PRK00164 moaA molybdenum cofactor biosynthesis protein A; Reviewed
Probab=64.61 E-value=1.1e+02 Score=27.84 Aligned_cols=161 Identities=15% Similarity=0.128 Sum_probs=82.0
Q ss_pred CCcchHHHHHHHHHHhCCcEEecCCCCC---CHHHHHHHHHHhhhcCCcCCCCeEEeeccCCCCCCCCcHHHHHHHHHHh
Q 021264 26 ADPGIVGNAVDVAIKAGYRHIDCARLYL---NEKEIGFVLKKLFEDGVVKREDLWITSKLWCTDLAPKDVPEALDNTLQD 102 (315)
Q Consensus 26 ~~~~~~~~~l~~A~~~Gi~~~DtA~~Yg---se~~lG~~l~~~~~~~~~~R~~~~i~tK~~~~~~~~~~i~~~ve~sL~~ 102 (315)
.+.+++.++++.+.+.|++.+.-.. | -..-+-+.++..-+.. .-.++.|+|-.. .+.+ .-+.|..
T Consensus 49 ls~eei~~~i~~~~~~gi~~I~~tG--GEPll~~~l~~li~~i~~~~--~~~~i~itTNG~-------ll~~-~~~~L~~ 116 (331)
T PRK00164 49 LSLEEIERLVRAFVALGVRKVRLTG--GEPLLRKDLEDIIAALAALP--GIRDLALTTNGY-------LLAR-RAAALKD 116 (331)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEEC--CCCcCccCHHHHHHHHHhcC--CCceEEEEcCch-------hHHH-HHHHHHH
Confidence 4557888899999999998877643 3 1111333443321000 123566666541 1222 2334555
Q ss_pred cCCCccceEeeecCCCccCCCCCCCCCCCCCCCHHHHHHHHHHHHhcCC----eeeEeecCCChhhHHHHHHhcC-CCCc
Q 021264 103 LQIDYVDLYLIHWPARMKKGSVGFNPENLLPLDIPSTWRAMEALYDSGK----ARAIGVCNFSTKKLGDLLEIAR-VPPA 177 (315)
Q Consensus 103 Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~L~~lk~~Gk----Ir~iGvS~~~~~~l~~~~~~~~-~~~~ 177 (315)
.|++.+- +-||..+...... ... ....+.++++++.+++.|. |..+.+...+.+++.++++... ....
T Consensus 117 agl~~i~-ISlds~~~e~~~~--i~~----~~~~~~vl~~i~~~~~~g~~~v~i~~vv~~g~n~~ei~~l~~~~~~~gv~ 189 (331)
T PRK00164 117 AGLDRVN-VSLDSLDPERFKA--ITG----RDRLDQVLAGIDAALAAGLTPVKVNAVLMKGVNDDEIPDLLEWAKDRGIQ 189 (331)
T ss_pred cCCCEEE-EEeccCCHHHhcc--CCC----CCCHHHHHHHHHHHHHCCCCcEEEEEEEECCCCHHHHHHHHHHHHhCCCe
Confidence 6655443 3445543321100 000 0357889999999999885 3344444556566666665542 2222
Q ss_pred ccccccCcccc-----------hHHHHHHHHHcCceEEE
Q 021264 178 VNQVECHSSWQ-----------QQKLHAFCKSKGVHLSG 205 (315)
Q Consensus 178 ~~q~~~n~~~~-----------~~~~~~~~~~~gi~v~~ 205 (315)
+..+.|.+... ..++++..+++|+.+..
T Consensus 190 v~~ie~~p~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 228 (331)
T PRK00164 190 LRFIELMPTGEGNEWFRKHHLSGAEIRARLAERGWTLQP 228 (331)
T ss_pred EEEEEeeECCCCcchhhhcCCCHHHHHHHHHhccCcccc
Confidence 22222222111 14577777777654433
No 48
>cd00308 enolase_like Enolase-superfamily, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion. Enolase superfamily contains different enzymes, like enolases, glutarate-, fucanate- and galactonate dehydratases, o-succinylbenzoate synthase, N-acylamino acid racemase, L-alanine-DL-glutamate epimerase, mandelate racemase, muconate lactonizing enzyme and 3-methylaspartase.
Probab=63.04 E-value=53 Score=28.26 Aligned_cols=94 Identities=13% Similarity=0.082 Sum_probs=60.1
Q ss_pred HHHHHHHhcCCCccceEeeecCCCccCCCCCCCCCCCCCCCHHHHHHHHHHHHhcCCee-eEeecCCChhhHHHHHHhcC
Q 021264 95 ALDNTLQDLQIDYVDLYLIHWPARMKKGSVGFNPENLLPLDIPSTWRAMEALYDSGKAR-AIGVCNFSTKKLGDLLEIAR 173 (315)
Q Consensus 95 ~ve~sL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~L~~lk~~GkIr-~iGvS~~~~~~l~~~~~~~~ 173 (315)
...+-++.|. ..++.++-.|-.. +-++.+.+|++...+. ..+=|.++.+.+.++++...
T Consensus 109 ~a~~~~~~l~--~~~i~~iEeP~~~------------------~d~~~~~~L~~~~~~pIa~dEs~~~~~~~~~~~~~~~ 168 (229)
T cd00308 109 EAIRLIRALE--KYGLAWIEEPCAP------------------DDLEGYAALRRRTGIPIAADESVTTVDDALEALELGA 168 (229)
T ss_pred HHHHHHHHhh--hcCCCeEECCCCc------------------cCHHHHHHHHhhCCCCEEeCCCCCCHHHHHHHHHcCC
Confidence 3444445552 3567777766542 1256677788777665 33445566666666655433
Q ss_pred CCCcccccccCccc---chHHHHHHHHHcCceEEEecCCC
Q 021264 174 VPPAVNQVECHSSW---QQQKLHAFCKSKGVHLSGYSPLG 210 (315)
Q Consensus 174 ~~~~~~q~~~n~~~---~~~~~~~~~~~~gi~v~~~~pl~ 210 (315)
.+++|+..+..- ...++...|+.+|+.++.++.+.
T Consensus 169 --~d~~~~k~~~~GGi~~~~~i~~~a~~~gi~~~~~~~~~ 206 (229)
T cd00308 169 --VDILQIKPTRVGGLTESRRAADLAEAFGIRVMVHGTLE 206 (229)
T ss_pred --CCEEecCccccCCHHHHHHHHHHHHHcCCEEeecCCCC
Confidence 477787765543 22678899999999999987763
No 49
>COG1751 Uncharacterized conserved protein [Function unknown]
Probab=62.60 E-value=72 Score=25.97 Aligned_cols=78 Identities=15% Similarity=0.053 Sum_probs=53.3
Q ss_pred CHHHHHHHHHHHHhcCCeeeEeecCCChhhHHHHHHhcCCCCcccccccCcccc-------hHHHHHHHHHcCceEEEec
Q 021264 135 DIPSTWRAMEALYDSGKARAIGVCNFSTKKLGDLLEIARVPPAVNQVECHSSWQ-------QQKLHAFCKSKGVHLSGYS 207 (315)
Q Consensus 135 ~~~~~~~~L~~lk~~GkIr~iGvS~~~~~~l~~~~~~~~~~~~~~q~~~n~~~~-------~~~~~~~~~~~gi~v~~~~ 207 (315)
.-+++++..-+=-++.-|++|=|.+.+.....++++.......++-+.+..-+. +.++.+..+++|..|+.-+
T Consensus 11 NT~~tle~a~erA~elgik~~vVAS~tG~tA~k~lemveg~lkvVvVthh~Gf~e~g~~e~~~E~~~~L~erGa~v~~~s 90 (186)
T COG1751 11 NTDETLEIAVERAKELGIKHIVVASSTGYTALKALEMVEGDLKVVVVTHHAGFEEKGTQEMDEEVRKELKERGAKVLTQS 90 (186)
T ss_pred chHHHHHHHHHHHHhcCcceEEEEecccHHHHHHHHhcccCceEEEEEeecccccCCceecCHHHHHHHHHcCceeeeeh
Confidence 345677766666667779999999888888888887765443333333333222 2689999999999998866
Q ss_pred CCCCC
Q 021264 208 PLGSP 212 (315)
Q Consensus 208 pl~~g 212 (315)
-...|
T Consensus 91 HalSg 95 (186)
T COG1751 91 HALSG 95 (186)
T ss_pred hhhhc
Confidence 55453
No 50
>PLN02746 hydroxymethylglutaryl-CoA lyase
Probab=61.66 E-value=49 Score=30.81 Aligned_cols=99 Identities=13% Similarity=0.078 Sum_probs=58.4
Q ss_pred cHHHHHHHHHHhcCCCccceEeeecCCCccCCCCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeeEeecCCChhhHHHHHH
Q 021264 91 DVPEALDNTLQDLQIDYVDLYLIHWPARMKKGSVGFNPENLLPLDIPSTWRAMEALYDSGKARAIGVCNFSTKKLGDLLE 170 (315)
Q Consensus 91 ~i~~~ve~sL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~L~~lk~~GkIr~iGvS~~~~~~l~~~~~ 170 (315)
.-+..+-+.|.++|+++|+.-..-+|.....- .+..++++.+.. ....+..++. .+...++.+++
T Consensus 68 e~Ki~ia~~L~~~GV~~IEvGs~vspk~vPqm-----------ad~~ev~~~i~~---~~~~~~~~l~-~n~~die~A~~ 132 (347)
T PLN02746 68 SVKVELIQRLVSSGLPVVEATSFVSPKWVPQL-----------ADAKDVMAAVRN---LEGARFPVLT-PNLKGFEAAIA 132 (347)
T ss_pred HHHHHHHHHHHHcCCCEEEECCCcCccccccc-----------ccHHHHHHHHHh---ccCCceeEEc-CCHHHHHHHHH
Confidence 45778888999999999999755444321100 233455555543 2234545554 47788888887
Q ss_pred hcCCCCcccccccCcccch--------------HHHHHHHHHcCceEEE
Q 021264 171 IARVPPAVNQVECHSSWQQ--------------QKLHAFCKSKGVHLSG 205 (315)
Q Consensus 171 ~~~~~~~~~q~~~n~~~~~--------------~~~~~~~~~~gi~v~~ 205 (315)
.. .+...+-++.+..+.. .+++++|+++|+.|.+
T Consensus 133 ~g-~~~v~i~~s~Sd~h~~~n~~~t~~e~l~~~~~~v~~Ak~~Gl~v~~ 180 (347)
T PLN02746 133 AG-AKEVAVFASASESFSKSNINCSIEESLVRYREVALAAKKHSIPVRG 180 (347)
T ss_pred cC-cCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCeEEE
Confidence 53 3222222222222211 3688899999998853
No 51
>cd03322 rpsA The starvation sensing protein RpsA from E.coli and its homologs are lactonizing enzymes whose putative targets are homoserine lactone (HSL)-derivative. They are part of the mandelate racemase (MR)-like subfamily of the enolase superfamily. Enzymes of this subfamily share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and catalytic residues, a partially conserved Lys-X-Lys motif and a conserved histidine-aspartate dyad.
Probab=59.87 E-value=31 Score=32.16 Aligned_cols=69 Identities=13% Similarity=0.069 Sum_probs=51.8
Q ss_pred HHHHHHHHHhcCCee-eEeecCCChhhHHHHHHhcCCCCcccccccCcc---cchHHHHHHHHHcCceEEEecCC
Q 021264 139 TWRAMEALYDSGKAR-AIGVCNFSTKKLGDLLEIARVPPAVNQVECHSS---WQQQKLHAFCKSKGVHLSGYSPL 209 (315)
Q Consensus 139 ~~~~L~~lk~~GkIr-~iGvS~~~~~~l~~~~~~~~~~~~~~q~~~n~~---~~~~~~~~~~~~~gi~v~~~~pl 209 (315)
-++.+.+|++...+. ..|=|.++...+..+++... ++++|+....+ .+..++.+.|+.+|+.++.++..
T Consensus 202 d~~~~~~L~~~~~~pia~gE~~~~~~~~~~~i~~~a--~di~~~d~~~~GGit~~~~ia~~A~~~gi~~~~h~~~ 274 (361)
T cd03322 202 NQEAFRLIRQHTATPLAVGEVFNSIWDWQNLIQERL--IDYIRTTVSHAGGITPARKIADLASLYGVRTGWHGPT 274 (361)
T ss_pred cHHHHHHHHhcCCCCEEeccCCcCHHHHHHHHHhCC--CCEEecCccccCCHHHHHHHHHHHHHcCCeeeccCCC
Confidence 377788888887665 67777788888888877643 47888877543 23368999999999999987554
No 52
>KOG0259 consensus Tyrosine aminotransferase [Amino acid transport and metabolism]
Probab=59.19 E-value=1.6e+02 Score=27.84 Aligned_cols=74 Identities=16% Similarity=0.229 Sum_probs=43.3
Q ss_pred ccCcCCcchHHHHHHHHHHhCCcEEecCCCCC-------CHHHHHHHHHHhhhcCCcCCCCeEEeeccCCCCCCCCcHHH
Q 021264 22 GTWQADPGIVGNAVDVAIKAGYRHIDCARLYL-------NEKEIGFVLKKLFEDGVVKREDLWITSKLWCTDLAPKDVPE 94 (315)
Q Consensus 22 G~~~~~~~~~~~~l~~A~~~Gi~~~DtA~~Yg-------se~~lG~~l~~~~~~~~~~R~~~~i~tK~~~~~~~~~~i~~ 94 (315)
|+.+++ .++.+.+..|++.| ....|+ +.+.+.+.+.+.. .+.+..+++|+++-. .+
T Consensus 75 ~~~~ts-~~a~~Av~~al~Sg-----k~N~Yaps~G~~~AR~AVAeYl~~~l-~~kl~a~DV~ltsGC----------~q 137 (447)
T KOG0259|consen 75 PCFRTS-QEAEQAVVDALRSG-----KGNGYAPSVGILPARRAVAEYLNRDL-PNKLTADDVVLTSGC----------SQ 137 (447)
T ss_pred ccccCC-HHHHHHHHHHHhcC-----CCCCcCCccccHHHHHHHHHHhhcCC-CCccCcCceEEeccc----------hH
Confidence 334444 45666677777776 234676 2444555543321 344678899988765 46
Q ss_pred HHHHHHHhcCCCccceEe
Q 021264 95 ALDNTLQDLQIDYVDLYL 112 (315)
Q Consensus 95 ~ve~sL~~Lg~d~iDl~~ 112 (315)
++|-.+..|---...+++
T Consensus 138 AIe~~i~~LA~p~aNILl 155 (447)
T KOG0259|consen 138 AIELAISSLANPGANILL 155 (447)
T ss_pred HHHHHHHHhcCCCCceec
Confidence 667666666655555554
No 53
>TIGR00190 thiC thiamine biosynthesis protein ThiC. The thiC ortholog is designated thiA in Bacillus subtilis.
Probab=58.75 E-value=1.7e+02 Score=27.85 Aligned_cols=144 Identities=20% Similarity=0.157 Sum_probs=83.7
Q ss_pred CcchHHHHHHHHHHhCCc-EEecCCCCCCHHHHHHHHHHhhhcCCcCCC--CeE-Eeecc--CCCCCCCCcHHHHHHHHH
Q 021264 27 DPGIVGNAVDVAIKAGYR-HIDCARLYLNEKEIGFVLKKLFEDGVVKRE--DLW-ITSKL--WCTDLAPKDVPEALDNTL 100 (315)
Q Consensus 27 ~~~~~~~~l~~A~~~Gi~-~~DtA~~Ygse~~lG~~l~~~~~~~~~~R~--~~~-i~tK~--~~~~~~~~~i~~~ve~sL 100 (315)
+.+.-.+-++.|++.|-. .-|.+. .|.-..+-+.+-+. -.++-- .+| ...+. ...+.+++.+-+.+|+..
T Consensus 75 d~~~E~~K~~~A~~~GADtiMDLSt-Ggdl~~iR~~il~~---s~vpvGTVPiYqa~~~~~~~~~~mt~d~~~~~ie~qa 150 (423)
T TIGR00190 75 DIEEEVEKALIAIKYGADTVMDLST-GGDLDEIRKAILDA---VPVPVGTVPIYQAAEKVHGAVEDMDEDDMFRAIEKQA 150 (423)
T ss_pred CHHHHHHHHHHHHHcCCCeEeeccC-CCCHHHHHHHHHHc---CCCCccCccHHHHHHHhcCChhhCCHHHHHHHHHHHH
Confidence 444555668899999975 567653 33322222222111 001100 010 00010 224566777777777666
Q ss_pred HhcCCCccceEeeecCCCccCCCCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeeEeecCCChhhHHHHHHhcCCCCcccc
Q 021264 101 QDLQIDYVDLYLIHWPARMKKGSVGFNPENLLPLDIPSTWRAMEALYDSGKARAIGVCNFSTKKLGDLLEIARVPPAVNQ 180 (315)
Q Consensus 101 ~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~L~~lk~~GkIr~iGvS~~~~~~l~~~~~~~~~~~~~~q 180 (315)
+ +-+|++-+|.- -..+.++.++++|+ ..|+-+-...-+........
T Consensus 151 ~----dGVDfmTiH~G---------------------i~~~~~~~~~~~~R--~~giVSRGGs~~~~WM~~~~------- 196 (423)
T TIGR00190 151 K----DGVDFMTIHAG---------------------VLLEYVERLKRSGR--ITGIVSRGGAILAAWMLHHH------- 196 (423)
T ss_pred H----hCCCEEEEccc---------------------hhHHHHHHHHhCCC--ccCeecCcHHHHHHHHHHcC-------
Confidence 5 45899999952 24678999999996 46777777666655544322
Q ss_pred cccCcccch-HHHHHHHHHcCceEEEecCC
Q 021264 181 VECHSSWQQ-QKLHAFCKSKGVHLSGYSPL 209 (315)
Q Consensus 181 ~~~n~~~~~-~~~~~~~~~~gi~v~~~~pl 209 (315)
.-|++..+ +++++.|+++++.+.---.|
T Consensus 197 -~ENPlye~fD~lLeI~~~yDVtlSLGDgl 225 (423)
T TIGR00190 197 -KENPLYKNFDYILEIAKEYDVTLSLGDGL 225 (423)
T ss_pred -CcCchHHHHHHHHHHHHHhCeeeeccCCc
Confidence 23455544 78999999999987654444
No 54
>cd03315 MLE_like Muconate lactonizing enzyme (MLE) like subgroup of the enolase superfamily. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and residues that can function as general acid/base catalysts, a Lys-X-Lys motif and another conserved lysine. Despite these conserved residues, the members of the MLE subgroup, like muconate lactonizing enzyme, o-succinylbenzoate synthase (OSBS) and N-acylamino acid racemase (NAAAR), catalyze different reactions.
Probab=58.47 E-value=1.3e+02 Score=26.48 Aligned_cols=150 Identities=14% Similarity=0.151 Sum_probs=85.6
Q ss_pred CcchHHHHHHHHHHhCCcEEecCCCCCCHHHHH--HHHHHhhhcCCcCCCCeEEeeccCCCCCCCCcHHHHHHHHHHhcC
Q 021264 27 DPGIVGNAVDVAIKAGYRHIDCARLYLNEKEIG--FVLKKLFEDGVVKREDLWITSKLWCTDLAPKDVPEALDNTLQDLQ 104 (315)
Q Consensus 27 ~~~~~~~~l~~A~~~Gi~~~DtA~~Ygse~~lG--~~l~~~~~~~~~~R~~~~i~tK~~~~~~~~~~i~~~ve~sL~~Lg 104 (315)
+.++..+.++.+.+.|++.|..=-.-..++.+. +++++. -.+++.|.-..+. ..+. +...+-++.|.
T Consensus 85 ~~~~~~~~~~~~~~~G~~~~KiKvg~~~~~d~~~v~~vr~~------~g~~~~l~vDan~-~~~~----~~a~~~~~~l~ 153 (265)
T cd03315 85 EPAEVAEEARRALEAGFRTFKLKVGRDPARDVAVVAALREA------VGDDAELRVDANR-GWTP----KQAIRALRALE 153 (265)
T ss_pred CHHHHHHHHHHHHHCCCCEEEEecCCCHHHHHHHHHHHHHh------cCCCCEEEEeCCC-CcCH----HHHHHHHHHHH
Confidence 345666777788899999887532211222221 234443 1234444444321 2222 22223333332
Q ss_pred CCccceEeeecCCCccCCCCCCCCCCCCCCCHHHHHHHHHHHHhcCCee-eEeecCCChhhHHHHHHhcCCCCccccccc
Q 021264 105 IDYVDLYLIHWPARMKKGSVGFNPENLLPLDIPSTWRAMEALYDSGKAR-AIGVCNFSTKKLGDLLEIARVPPAVNQVEC 183 (315)
Q Consensus 105 ~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~L~~lk~~GkIr-~iGvS~~~~~~l~~~~~~~~~~~~~~q~~~ 183 (315)
..++.++..|-.. +-++.+.++++.-.+. ..|=+-++...+.++++... .+++|+..
T Consensus 154 --~~~i~~iEeP~~~------------------~d~~~~~~l~~~~~ipia~dE~~~~~~~~~~~i~~~~--~d~v~~k~ 211 (265)
T cd03315 154 --DLGLDYVEQPLPA------------------DDLEGRAALARATDTPIMADESAFTPHDAFRELALGA--ADAVNIKT 211 (265)
T ss_pred --hcCCCEEECCCCc------------------ccHHHHHHHHhhCCCCEEECCCCCCHHHHHHHHHhCC--CCEEEEec
Confidence 2345556665431 2256677777775554 44555677788888776543 47778776
Q ss_pred Ccccc---hHHHHHHHHHcCceEEEecCC
Q 021264 184 HSSWQ---QQKLHAFCKSKGVHLSGYSPL 209 (315)
Q Consensus 184 n~~~~---~~~~~~~~~~~gi~v~~~~pl 209 (315)
...-- ..++...|+.+|+.++.++.+
T Consensus 212 ~~~GGi~~~~~~~~~A~~~gi~~~~~~~~ 240 (265)
T cd03315 212 AKTGGLTKAQRVLAVAEALGLPVMVGSMI 240 (265)
T ss_pred ccccCHHHHHHHHHHHHHcCCcEEecCcc
Confidence 65432 267899999999999998665
No 55
>PRK15072 bifunctional D-altronate/D-mannonate dehydratase; Provisional
Probab=57.00 E-value=37 Score=32.28 Aligned_cols=68 Identities=13% Similarity=0.071 Sum_probs=51.5
Q ss_pred HHHHHHHHhcCCee-eEeecCCChhhHHHHHHhcCCCCcccccccCccc---chHHHHHHHHHcCceEEEecCC
Q 021264 140 WRAMEALYDSGKAR-AIGVCNFSTKKLGDLLEIARVPPAVNQVECHSSW---QQQKLHAFCKSKGVHLSGYSPL 209 (315)
Q Consensus 140 ~~~L~~lk~~GkIr-~iGvS~~~~~~l~~~~~~~~~~~~~~q~~~n~~~---~~~~~~~~~~~~gi~v~~~~pl 209 (315)
++.+.+|++.-.|. ..|=|.++...+..+++... ++++|......- ...++...|+.+|+.++.+...
T Consensus 246 ~~~~~~L~~~~~iPIa~dEs~~~~~~~~~li~~~a--~dii~~d~~~~GGit~~~kia~lA~~~gi~~~~h~~~ 317 (404)
T PRK15072 246 QEAFRLIRQHTTTPLAVGEVFNSIWDCKQLIEEQL--IDYIRTTVTHAGGITHLRRIADFAALYQVRTGSHGPT 317 (404)
T ss_pred HHHHHHHHhcCCCCEEeCcCccCHHHHHHHHHcCC--CCEEecCccccCcHHHHHHHHHHHHHcCCceeeccCc
Confidence 67788888876665 66777788899988887643 478887765532 3368899999999999987654
No 56
>COG2069 CdhD CO dehydrogenase/acetyl-CoA synthase delta subunit (corrinoid Fe-S protein) [Energy production and conversion]
Probab=55.61 E-value=1.5e+02 Score=27.07 Aligned_cols=102 Identities=9% Similarity=0.090 Sum_probs=66.7
Q ss_pred HHHHHhcCCCccceEeeecCCCccCCCCCCCCCCCCCCCHHHHHHHHHHHHhcCCee-eEeecCC---ChhhHHHHHHhc
Q 021264 97 DNTLQDLQIDYVDLYLIHWPARMKKGSVGFNPENLLPLDIPSTWRAMEALYDSGKAR-AIGVCNF---STKKLGDLLEIA 172 (315)
Q Consensus 97 e~sL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~L~~lk~~GkIr-~iGvS~~---~~~~l~~~~~~~ 172 (315)
.+..+++| .|++-+|-..... ...+.+..+..+.|+++-+.=++- .||=|.. ++..++++.+.+
T Consensus 157 rk~Vk~fg---admvTiHlIsTdP---------ki~D~p~~EAak~lEdvLqAVdvPiiiGGSGnpeKDpeVlekaAEva 224 (403)
T COG2069 157 RKCVKKFG---ADMVTIHLISTDP---------KIKDTPAKEAAKTLEDVLQAVDVPIIIGGSGNPEKDPEVLEKAAEVA 224 (403)
T ss_pred HHHHHHhC---CceEEEEeecCCc---------cccCCCHHHHHHHHHHHHHhcCcCEEecCCCCCccCHHHHHHHHHhh
Confidence 34557787 6788888554321 122267889999999998887764 4666664 456777777766
Q ss_pred CCCCcccccccCcccchHHHHHHHHHcCceEEEecCCCC
Q 021264 173 RVPPAVNQVECHSSWQQQKLHAFCKSKGVHLSGYSPLGS 211 (315)
Q Consensus 173 ~~~~~~~q~~~n~~~~~~~~~~~~~~~gi~v~~~~pl~~ 211 (315)
... .+...+.|+-.--..+.++|.++|=.|++|+++.-
T Consensus 225 EGe-RclLaSanldlDy~~ia~AA~ky~H~VLswt~~D~ 262 (403)
T COG2069 225 EGE-RCLLASANLDLDYERIAEAALKYDHVVLSWTQMDV 262 (403)
T ss_pred cCc-eEEeeccccccCHHHHHHHHHhcCceEEEeeccCh
Confidence 431 11122222222226799999999999999999854
No 57
>TIGR02026 BchE magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative cyclase. This model respresents the cobalamin-dependent oxidative cyclase responsible for forming the distinctive E-ring of the chlorin ring system under anaerobic conditions. This step is essential in the biosynthesis of both bacteriochlorophyll and chlorophyll under anaerobic conditions (a separate enzyme, AcsF, acts under aerobic conditions). This model identifies two clades of sequences, one from photosynthetic, non-cyanobacterial bacteria and another including Synechocystis and several non-photosynthetic bacteria. The function of the Synechocystis gene is supported by gene clustering with other photosynthetic genes, so the purpose of the gene in the non-photosynthetic bacteria is uncertain. Note that homologs of this gene are not found in plants which rely solely on the aerobic cyclase.
Probab=54.84 E-value=1.2e+02 Score=29.77 Aligned_cols=76 Identities=9% Similarity=0.024 Sum_probs=47.3
Q ss_pred CCHHHHHHHHHHHHhcCCeeeEeecC----CChhhHHHHHHhc---C-CCC-cccccccCcccchHHHHHHHHHcCceEE
Q 021264 134 LDIPSTWRAMEALYDSGKARAIGVCN----FSTKKLGDLLEIA---R-VPP-AVNQVECHSSWQQQKLHAFCKSKGVHLS 204 (315)
Q Consensus 134 ~~~~~~~~~L~~lk~~GkIr~iGvS~----~~~~~l~~~~~~~---~-~~~-~~~q~~~n~~~~~~~~~~~~~~~gi~v~ 204 (315)
.+.+.+++.++.++++..++.+-+.. .+...+.++++.. + .++ -..+...+.+.++.++++.+++.|+.-+
T Consensus 222 rs~e~Vv~Ei~~l~~~~gv~~~~~~Dd~f~~~~~~~~~l~~~l~~~~~l~i~w~~~~r~~~i~~d~ell~~l~~aG~~~v 301 (497)
T TIGR02026 222 RDPKKFVDEIEWLVRTHGVGFFILADEEPTINRKKFQEFCEEIIARNPISVTWGINTRVTDIVRDADILHLYRRAGLVHI 301 (497)
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEEecccccCHHHHHHHHHHHHhcCCCCeEEEEecccccccCCHHHHHHHHHhCCcEE
Confidence 46788999999998776677776653 2334444444321 1 111 1234444444446789999999998777
Q ss_pred EecCC
Q 021264 205 GYSPL 209 (315)
Q Consensus 205 ~~~pl 209 (315)
..+.=
T Consensus 302 ~iGiE 306 (497)
T TIGR02026 302 SLGTE 306 (497)
T ss_pred EEccc
Confidence 66444
No 58
>cd01965 Nitrogenase_MoFe_beta_like Nitrogenase_MoFe_beta_like: Nitrogenase MoFe protein, beta subunit_like. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen (N2) to ammonia. This group contains the beta subunits of component 1 of the three known genetically distinct types of nitrogenase systems: a molybdenum-dependent nitrogenase (Mo-nitrogenase), a vanadium-dependent nitrogenase (V-nitrogenase), and an iron-only nitrogenase (Fe-nitrogenase). These nitrogenase systems consist of component 1 (MoFe protein, VFe protein or, FeFe protein respectively) and, component 2 (Fe protein). The most widespread and best characterized of these systems is the Mo-nitrogenase. MoFe is an alpha2beta2 tetramer, the alternative nitrogenases are alpha2beta2delta2 hexamers having alpha and beta subunits similar to the alpha and beta subunits of MoFe. For MoFe, each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (Fe
Probab=54.14 E-value=2e+02 Score=27.39 Aligned_cols=114 Identities=14% Similarity=0.126 Sum_probs=61.2
Q ss_pred CCCCHHHHHHHHHHhhhcCCcCCCCeEEeeccCCCCCCCCcHHHHHHHHHHhcC-CCccceEeeecCCCccCCCCCCCCC
Q 021264 51 LYLNEKEIGFVLKKLFEDGVVKREDLWITSKLWCTDLAPKDVPEALDNTLQDLQ-IDYVDLYLIHWPARMKKGSVGFNPE 129 (315)
Q Consensus 51 ~Ygse~~lG~~l~~~~~~~~~~R~~~~i~tK~~~~~~~~~~i~~~ve~sL~~Lg-~d~iDl~~lH~p~~~~~~~~~~~~~ 129 (315)
.||.++.|-+++++..++. +.+-++|.|-. ....--+.+..-+++.-++.. -.-+.++.+|.|.......
T Consensus 62 V~Gg~~~L~~~i~~~~~~~--~p~~I~v~~tC-~~~liGdDi~~v~~~~~~~~~~~~~~~vi~v~tpgf~g~~~------ 132 (428)
T cd01965 62 VFGGEDNLIEALKNLLSRY--KPDVIGVLTTC-LTETIGDDVAGFIKEFRAEGPEPADFPVVYASTPSFKGSHE------ 132 (428)
T ss_pred eECcHHHHHHHHHHHHHhc--CCCEEEEECCc-chhhcCCCHHHHHHHHHhhccCCCCCeEEEeeCCCCCCcHH------
Confidence 3677888889988875543 34445555554 333333444444444333221 0136678888887642110
Q ss_pred CCCCCCHHHHHHHHHH-H------HhcCCeeeEeecCC---ChhhHHHHHHhcCCCCc
Q 021264 130 NLLPLDIPSTWRAMEA-L------YDSGKARAIGVCNF---STKKLGDLLEIARVPPA 177 (315)
Q Consensus 130 ~~~~~~~~~~~~~L~~-l------k~~GkIr~iGvS~~---~~~~l~~~~~~~~~~~~ 177 (315)
.....++++|-+ + ++.++|--||-++. +.+.+.++++..++++.
T Consensus 133 ----~G~~~a~~al~~~~~~~~~~~~~~~VNlig~~~~~~~d~~el~~lL~~~Gl~v~ 186 (428)
T cd01965 133 ----TGYDNAVKAIIEQLAKPSEVKKNGKVNLLPGFPLTPGDVREIKRILEAFGLEPI 186 (428)
T ss_pred ----HHHHHHHHHHHHHHhcccCCCCCCeEEEECCCCCCccCHHHHHHHHHHcCCCEE
Confidence 122333444432 2 24567888876654 34677777777665433
No 59
>TIGR01228 hutU urocanate hydratase. This model represents the second of four enzymes involved in the degradation of histidine to glutamate.
Probab=54.10 E-value=40 Score=32.75 Aligned_cols=130 Identities=15% Similarity=0.082 Sum_probs=87.7
Q ss_pred HHHHHHHHHHhCCcEEe--cCCCC---C-------CHHHHHHHHHHhhhcCCcCCCCeEEeeccCCCCCC-CC-------
Q 021264 31 VGNAVDVAIKAGYRHID--CARLY---L-------NEKEIGFVLKKLFEDGVVKREDLWITSKLWCTDLA-PK------- 90 (315)
Q Consensus 31 ~~~~l~~A~~~Gi~~~D--tA~~Y---g-------se~~lG~~l~~~~~~~~~~R~~~~i~tK~~~~~~~-~~------- 90 (315)
--+-.+...+.|++.+= ||.+| | .-+++..+-++.+.. --+-++|+++-++.-... |.
T Consensus 105 ~~e~f~~l~~~Gl~mYGQMTAGsw~YIG~QGIvqGTyeT~~~aark~f~~--~L~G~~~lTaGLGGMgGAQPlA~~mag~ 182 (545)
T TIGR01228 105 DWEHFHELEAKGLMMYGQMTAGSWIYIGTQGILQGTYETFAELARQHFGG--SLKGKWVLTAGLGGMGGAQPLAVTMNGG 182 (545)
T ss_pred CHHHHHHHHHcccccccCccccceEEEcCcceeecHHHHHHHHHHHhcCC--CCceeEEEEeCCCccccccHHHHHHcCc
Confidence 34567788888988654 44443 2 255666777776632 247788888888642110 00
Q ss_pred ---cHHHHHHHHHHhcCCCccceEeeecCCCccCCCCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeeEeecCCChhhHHH
Q 021264 91 ---DVPEALDNTLQDLQIDYVDLYLIHWPARMKKGSVGFNPENLLPLDIPSTWRAMEALYDSGKARAIGVCNFSTKKLGD 167 (315)
Q Consensus 91 ---~i~~~ve~sL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~L~~lk~~GkIr~iGvS~~~~~~l~~ 167 (315)
.++-.-.+.-+|+.+.|+|-+. .++++.++..++.+++|+...||+-..-.+.+.+
T Consensus 183 v~i~vEvd~~ri~kR~~~gyld~~~---------------------~~ldeal~~~~~a~~~~~~~SIg~~GNaadv~~~ 241 (545)
T TIGR01228 183 VSIAVEVDESRIDKRLETKYCDEQT---------------------DSLDEALARAEEAKAEGKPISIGLLGNAAEVLPE 241 (545)
T ss_pred eEEEEEECHHHHHHHHhcCcceeEc---------------------CCHHHHHHHHHHHHHcCCceEEEeeccHHHHHHH
Confidence 0112234556788899999872 5689999999999999999999999988888888
Q ss_pred HHHhcC-CCCccccccc
Q 021264 168 LLEIAR-VPPAVNQVEC 183 (315)
Q Consensus 168 ~~~~~~-~~~~~~q~~~ 183 (315)
+++..- +++..-|.+.
T Consensus 242 l~~r~i~pDlvtDQTSa 258 (545)
T TIGR01228 242 LLKRGVVPDVVTDQTSA 258 (545)
T ss_pred HHHcCCCCCCcCCCCcc
Confidence 887532 3445566655
No 60
>TIGR02932 vnfK_nitrog V-containing nitrogenase, beta subunit. Nitrogenase is the enzyme of biological nitrogen fixation. The most wide-spread and most efficient nitrogenase contains a molybdenum cofactor. This protein family, VnfK, represents the beta subunit of the vanadium (V)-containing alternative nitrogenase. It is homologous to NifK and AnfK, of the molybdenum-containing and the iron (Fe)-only types, respectively.
Probab=53.28 E-value=2.2e+02 Score=27.58 Aligned_cols=113 Identities=13% Similarity=0.064 Sum_probs=61.7
Q ss_pred CCCCHHHHHHHHHHhhhcCCcCCCC-eEEeeccCCCCCCCCcHHHHHHHHHHhcCCC----ccceEeeecCCCccCCCCC
Q 021264 51 LYLNEKEIGFVLKKLFEDGVVKRED-LWITSKLWCTDLAPKDVPEALDNTLQDLQID----YVDLYLIHWPARMKKGSVG 125 (315)
Q Consensus 51 ~Ygse~~lG~~l~~~~~~~~~~R~~-~~i~tK~~~~~~~~~~i~~~ve~sL~~Lg~d----~iDl~~lH~p~~~~~~~~~ 125 (315)
.||.++.|-++|++..++. +..+ ++|.|-+ ....--+.+..-+++.-+++.-+ .+.++.+|.|+......
T Consensus 70 VfGG~~kL~~aI~~~~~~~--~~p~~I~V~ttC-~~eiIGDDi~~v~~~~~~~~~~e~~~~~~~vv~v~tpgF~gs~~-- 144 (457)
T TIGR02932 70 VFGGAKRIEEGVLTLARRY--PNLRVIPIITTC-STETIGDDIEGSIRKVNRALKKEFPDRKIKLVPVHTPSFKGSQV-- 144 (457)
T ss_pred EECcHHHHHHHHHHHHHhC--CCCCEEEEECCc-hHHhhcCCHHHHHHHHHhhhhhhcCCCCCeEEEeeCCCCcCcHH--
Confidence 4788888999998875432 2234 5555554 33444455666655543333222 37889999988753110
Q ss_pred CCCCCCCCCCHHHHHHHHHHHH------hcCCeeeEeecCC--ChhhHHHHHHhcCCCC
Q 021264 126 FNPENLLPLDIPSTWRAMEALY------DSGKARAIGVCNF--STKKLGDLLEIARVPP 176 (315)
Q Consensus 126 ~~~~~~~~~~~~~~~~~L~~lk------~~GkIr~iGvS~~--~~~~l~~~~~~~~~~~ 176 (315)
......+++|-+.. .+++|--||-.+. +.+.+.++++..++.+
T Consensus 145 --------~G~~~a~~ali~~~~~~~~~~~~~VNii~~~~~~gD~~eik~lL~~~Gl~v 195 (457)
T TIGR02932 145 --------TGYAECVKSVIKTIAAKKGEPSGKLNVFPGWVNPGDVVLLKHYFSEMGVDA 195 (457)
T ss_pred --------HHHHHHHHHHHHHHhhccCCCCCcEEEECCCCChHHHHHHHHHHHHcCCCE
Confidence 12333444433222 2466777764332 3346666677665543
No 61
>TIGR03700 mena_SCO4494 putative menaquinone biosynthesis protein, SCO4494 family. Members of this protein family appear to be involved in menaquinone biosynthesis by an alternate pathway via futalosine, based on close phylogenetic correlation with known markers of the futalosine pathway, gene clustering in many organisms, and paralogy with the SCO4550 protein.
Probab=53.20 E-value=1.7e+02 Score=27.12 Aligned_cols=127 Identities=11% Similarity=0.117 Sum_probs=65.3
Q ss_pred CCCcHHHHHHHHHHhcCCCccceEeeecCCCccCCCCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeeEeecCCChhhHHH
Q 021264 88 APKDVPEALDNTLQDLQIDYVDLYLIHWPARMKKGSVGFNPENLLPLDIPSTWRAMEALYDSGKARAIGVCNFSTKKLGD 167 (315)
Q Consensus 88 ~~~~i~~~ve~sL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~L~~lk~~GkIr~iGvS~~~~~~l~~ 167 (315)
+++.+.+.+++ ....|...+.+..-+.|+ .+.+.+.+.++.+++..- .+-+..+++..+..
T Consensus 80 ~~eeI~~~a~~-~~~~G~~~v~l~~G~~p~----------------~~~~~~~e~i~~Ik~~~p--~i~i~~~~~~ei~~ 140 (351)
T TIGR03700 80 SLEEIVARVKE-AYAPGATEVHIVGGLHPN----------------LPFEWYLDMIRTLKEAYP--DLHVKAFTAVEIHH 140 (351)
T ss_pred CHHHHHHHHHH-HHHCCCcEEEEecCCCCC----------------CCHHHHHHHHHHHHHHCC--CceEEeCCHHHHHH
Confidence 33444444443 244666666665433332 334566777777776642 34455555555554
Q ss_pred HHHhcCCCCcccccccCcccchHHHHHHHHHcCceEEEecCCCCCCCCCCccccCCchHHHHHHHHhCCCHHH--HHHHH
Q 021264 168 LLEIARVPPAVNQVECHSSWQQQKLHAFCKSKGVHLSGYSPLGSPGTRWIKSDVLRHPVLKTAAEKLGKTPAQ--VALRW 245 (315)
Q Consensus 168 ~~~~~~~~~~~~q~~~n~~~~~~~~~~~~~~~gi~v~~~~pl~~gg~~~~~~~~~~~~~l~~la~~~~~s~aq--~al~~ 245 (315)
+....+. ...+.++..++.|+..+... |. ..+....+..+++. ..+..+ -++++
T Consensus 141 ~~~~~g~-------------~~~e~l~~LkeAGld~~~~~-----g~-----E~~~~~v~~~i~~~-~~~~~~~l~~i~~ 196 (351)
T TIGR03700 141 FSKISGL-------------PTEEVLDELKEAGLDSMPGG-----GA-----EIFAEEVRQQICPE-KISAERWLEIHRT 196 (351)
T ss_pred HHHHcCC-------------CHHHHHHHHHHcCCCcCCCC-----cc-----cccCHHHHhhcCCC-CCCHHHHHHHHHH
Confidence 4433221 23677888888888766521 11 22223333444332 233444 26666
Q ss_pred HhhcC----CeeecCC
Q 021264 246 GLQMG----HSVLPKS 257 (315)
Q Consensus 246 ~l~~~----~~~i~G~ 257 (315)
+...| ...++|.
T Consensus 197 a~~~Gi~~~sg~i~Gl 212 (351)
T TIGR03700 197 AHELGLKTNATMLYGH 212 (351)
T ss_pred HHHcCCCcceEEEeeC
Confidence 66665 3456776
No 62
>PF05321 HHA: Haemolysin expression modulating protein; InterPro: IPR007985 This family consists of haemolysin expression modulating protein (Hha) from Escherichia coli and its enterobacterial homologues, such as YmoA from Yersinia enterocolitica, and RmoA encoded on the R100 plasmid. These proteins act as modulators of bacterial gene expression. Members of the Hha/YmoA/RmoA family act in conjunction with members of the H-NS family, participating in the thermoregulation of different virulence factors and in plasmid transfer []. Hha, along with the chromatin-associated protein H-NS, is involved in the regulation of expression of the toxin alpha-haemolysin in response to osmolarity and temperature []. YmoA modulates the expression of various virulence factors, such as Yop proteins and YadA adhesin, in response to temperature. RmoA is a plasmid R100 modulator involved in plasmid transfer []. The HHA family of proteins display striking similarity to the oligomerization domain of the H-NS proteins.; PDB: 1JW2_A 2K5S_A 2JQT_A.
Probab=53.06 E-value=6.5 Score=26.10 Aligned_cols=50 Identities=12% Similarity=0.273 Sum_probs=33.2
Q ss_pred CCCCHHHHHHhhcccCcccCHHHHHHHHhchhhh---hcccccccccCCCCcc
Q 021264 256 KSTNEARIKENFDIFDWSISEDLFVKFSEIEQAR---LIRGTAYVHDTFGSYR 305 (315)
Q Consensus 256 G~~~~~~l~~nl~a~~~~Lt~e~~~~l~~~~~~~---~~~g~~~~~~~~~~~~ 305 (315)
.+++.+-|+-.++-....|+.+|+..+.++.+.+ ...|.-|-+-|++-|+
T Consensus 5 rcss~dtLEkv~e~~~~~L~~~e~~~f~~AaDHR~AEL~~~klyDkVP~~vW~ 57 (57)
T PF05321_consen 5 RCSSLDTLEKVIEHNRYKLTDDELEAFNSAADHRRAELTMGKLYDKVPKSVWK 57 (57)
T ss_dssp TSS-HHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHTTS--SS--CHHHH
T ss_pred ccCCHhhHHHHHHHhhCcCCHHHHHHHHHHHHHHHHHHHHhhhhhhCCHHhcC
Confidence 3678888888888888899999999998887733 2557767666876553
No 63
>PRK14461 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=52.25 E-value=84 Score=29.55 Aligned_cols=98 Identities=11% Similarity=0.041 Sum_probs=65.9
Q ss_pred EeeecCCCccCCCCCCCCCCCCCCCHHHHHHHHHHHHhc-CC---eeeEeec--CCChhhHHHHHHhcC-C------CCc
Q 021264 111 YLIHWPARMKKGSVGFNPENLLPLDIPSTWRAMEALYDS-GK---ARAIGVC--NFSTKKLGDLLEIAR-V------PPA 177 (315)
Q Consensus 111 ~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~L~~lk~~-Gk---Ir~iGvS--~~~~~~l~~~~~~~~-~------~~~ 177 (315)
+.||.|+...+..-..-+.. .+++++++++.+..++ |+ +-|+=+. |-+++++.++.+... . +..
T Consensus 232 iSLHA~~~e~R~~lmPin~~---ypl~eLl~a~~~y~~~t~rrit~EYvLi~gvNDs~e~A~~L~~llk~~~~~~~l~~~ 308 (371)
T PRK14461 232 ISLHAPDDALRSELMPVNRR---YPIADLMAATRDYIAKTRRRVSFEYVLLQGKNDHPEQAAALARLLRGEAPPGPLLVH 308 (371)
T ss_pred EEeCCCCHHHHHHhcCcccC---CCHHHHHHHHHHHHHhhCCEEEEEEEEECCCCCCHHHHHHHHHHHcCCccccCCceE
Confidence 68999987654332211112 5789999999988654 32 2233233 456788888877664 3 568
Q ss_pred ccccccCcccch----------HHHHHHHHHcCceEEEecCCCC
Q 021264 178 VNQVECHSSWQQ----------QKLHAFCKSKGVHLSGYSPLGS 211 (315)
Q Consensus 178 ~~q~~~n~~~~~----------~~~~~~~~~~gi~v~~~~pl~~ 211 (315)
++-++||+.... ....+.++++||.+......+.
T Consensus 309 VNLIp~Np~~~~~~~~ps~~~i~~F~~~L~~~gi~vtiR~s~G~ 352 (371)
T PRK14461 309 VNLIPWNPVPGTPLGRSERERVTTFQRILTDYGIPCTVRVERGV 352 (371)
T ss_pred EEEecCCCCCCCCCCCCCHHHHHHHHHHHHHCCceEEEeCCCCc
Confidence 899999986431 3567778899999999887743
No 64
>PRK07094 biotin synthase; Provisional
Probab=52.11 E-value=1.4e+02 Score=27.11 Aligned_cols=121 Identities=10% Similarity=0.085 Sum_probs=65.3
Q ss_pred CCHHHHHHHHHHHHhcCCeeeEeecC-----CChhhHHHHHHhcCCCCcccccccCcccchHHHHHHHHHcCceEEEecC
Q 021264 134 LDIPSTWRAMEALYDSGKARAIGVCN-----FSTKKLGDLLEIARVPPAVNQVECHSSWQQQKLHAFCKSKGVHLSGYSP 208 (315)
Q Consensus 134 ~~~~~~~~~L~~lk~~GkIr~iGvS~-----~~~~~l~~~~~~~~~~~~~~q~~~n~~~~~~~~~~~~~~~gi~v~~~~p 208 (315)
.+.+++.+.++.+++.| ++.+.++. +..+.+.++++...-.+. +.+.++......+.++..++.|+..+..+.
T Consensus 70 ls~eei~~~~~~~~~~g-~~~i~l~gG~~~~~~~~~l~~l~~~i~~~~~-l~i~~~~g~~~~e~l~~Lk~aG~~~v~~gl 147 (323)
T PRK07094 70 LSPEEILECAKKAYELG-YRTIVLQSGEDPYYTDEKIADIIKEIKKELD-VAITLSLGERSYEEYKAWKEAGADRYLLRH 147 (323)
T ss_pred CCHHHHHHHHHHHHHCC-CCEEEEecCCCCCCCHHHHHHHHHHHHccCC-ceEEEecCCCCHHHHHHHHHcCCCEEEecc
Confidence 46778888888888776 45565542 234555555544322111 233344444457788888888887766433
Q ss_pred CCCCCCCCCccccCCchHHHHHHHHhCCCHHH--HHHHHHhhcC----CeeecCC--CCHHHHHHhhcc
Q 021264 209 LGSPGTRWIKSDVLRHPVLKTAAEKLGKTPAQ--VALRWGLQMG----HSVLPKS--TNEARIKENFDI 269 (315)
Q Consensus 209 l~~gg~~~~~~~~~~~~~l~~la~~~~~s~aq--~al~~~l~~~----~~~i~G~--~~~~~l~~nl~a 269 (315)
=. .....+..+.+ +.+..+ -+++++...+ ...++|. .+.+++.+.+..
T Consensus 148 Es-----------~~~~~~~~i~~--~~s~~~~~~~i~~l~~~Gi~v~~~~iiGlpget~ed~~~~l~~ 203 (323)
T PRK07094 148 ET-----------ADKELYAKLHP--GMSFENRIACLKDLKELGYEVGSGFMVGLPGQTLEDLADDILF 203 (323)
T ss_pred cc-----------CCHHHHHHhCC--CCCHHHHHHHHHHHHHcCCeecceEEEECCCCCHHHHHHHHHH
Confidence 21 11223333322 233333 2455555555 3456663 567777666553
No 65
>PRK07534 methionine synthase I; Validated
Probab=52.03 E-value=2e+02 Score=26.65 Aligned_cols=209 Identities=12% Similarity=0.055 Sum_probs=114.0
Q ss_pred chHHHHHHHHHHhCCcEEecCCCCCCHHHH-------------HHHH---HHhhhcCCcCCCCeEEeeccCCCC------
Q 021264 29 GIVGNAVDVAIKAGYRHIDCARLYLNEKEI-------------GFVL---KKLFEDGVVKREDLWITSKLWCTD------ 86 (315)
Q Consensus 29 ~~~~~~l~~A~~~Gi~~~DtA~~Ygse~~l-------------G~~l---~~~~~~~~~~R~~~~i~tK~~~~~------ 86 (315)
+.+.++=+..+++|-+++=|.....+-..+ -.++ ++... . ...+++|+.-+++..
T Consensus 45 e~V~~vH~~Yl~AGAdiI~TnTy~as~~~l~~~~~~~~~~~l~~~av~lAr~a~~-~--~~~~~~VaGsIGP~g~~l~~~ 121 (336)
T PRK07534 45 DNITALHQGFVDAGSDIILTNSFGGTAARLKLHDAQDRVHELNRAAAEIAREVAD-K--AGRKVIVAGSVGPTGEIMEPM 121 (336)
T ss_pred HHHHHHHHHHHHhcCCEEEecCcccCHHHHHhcCcHHHHHHHHHHHHHHHHHHHH-h--cCCccEEEEecCCCccccCCC
Confidence 344445556679999999876542232111 1111 11110 0 123578888887632
Q ss_pred --CCCCcHHHHHHHHHHhcCCCccceEeeecCCCccCCCCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeeEeecCCCh--
Q 021264 87 --LAPKDVPEALDNTLQDLQIDYVDLYLIHWPARMKKGSVGFNPENLLPLDIPSTWRAMEALYDSGKARAIGVCNFST-- 162 (315)
Q Consensus 87 --~~~~~i~~~ve~sL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~L~~lk~~GkIr~iGvS~~~~-- 162 (315)
.+.+.+.......++.|--.-+|++++-.. .+..|...+++.+++.|+=-.+.++....
T Consensus 122 ~~~~~~e~~~~~~~qi~~l~~~gvD~l~~ET~-----------------p~l~E~~a~~~~~~~~~~Pv~vSft~~~~g~ 184 (336)
T PRK07534 122 GALTHALAVEAFHEQAEGLKAGGADVLWVETI-----------------SAPEEIRAAAEAAKLAGMPWCGTMSFDTAGR 184 (336)
T ss_pred CCCCHHHHHHHHHHHHHHHHhCCCCEEEEecc-----------------CCHHHHHHHHHHHHHcCCeEEEEEEECCCCe
Confidence 233456777777777774456999998753 34677777777777777765566655321
Q ss_pred ----hhHHHHHHh---cCCCCcccccccCc-ccch-HHHHHHHHHc-CceEEEecCCCCCCCCCCccccCCchHHHHHHH
Q 021264 163 ----KKLGDLLEI---ARVPPAVNQVECHS-SWQQ-QKLHAFCKSK-GVHLSGYSPLGSPGTRWIKSDVLRHPVLKTAAE 232 (315)
Q Consensus 163 ----~~l~~~~~~---~~~~~~~~q~~~n~-~~~~-~~~~~~~~~~-gi~v~~~~pl~~gg~~~~~~~~~~~~~l~~la~ 232 (315)
..++++++. ....++.+-+++.. ...- ..++...... ++.+++|- -+ |.- .......
T Consensus 185 l~~G~~~~~~~~~~~~~~~~~~avGvNC~~gp~~~~~~l~~~~~~~~~~pl~vyP-Na--G~p-----~~~~~~~----- 251 (336)
T PRK07534 185 TMMGLTPADLADLVEKLGEPPLAFGANCGVGASDLLRTVLGFTAQGPERPIIAKG-NA--GIP-----KYVDGHI----- 251 (336)
T ss_pred eCCCCcHHHHHHHHHhcCCCceEEEecCCCCHHHHHHHHHHHHHhcCCCeEEEEc-CC--CCc-----ccCCCcc-----
Confidence 222333322 22345777777764 2222 3344444433 56666663 32 320 1100000
Q ss_pred HhCCC---HHHHHHHHHhhcCCeeecCC--CCHHHHHHhhcccC
Q 021264 233 KLGKT---PAQVALRWGLQMGHSVLPKS--TNEARIKENFDIFD 271 (315)
Q Consensus 233 ~~~~s---~aq~al~~~l~~~~~~i~G~--~~~~~l~~nl~a~~ 271 (315)
.+..+ -++.+-.|. ..+..+|=|| ++|+|+++.-++++
T Consensus 252 ~~~~~p~~~~~~~~~~~-~~Ga~iIGGCCGTtP~hI~~la~~l~ 294 (336)
T PRK07534 252 HYDGTPELMAEYAVLAR-DAGARIIGGCCGTMPEHLAAMRAALD 294 (336)
T ss_pred ccCCCHHHHHHHHHHHH-HcCCcEEeeecCCCHHHHHHHHHHHc
Confidence 12223 345566673 4577777666 88999988877665
No 66
>cd00405 PRAI Phosphoribosylanthranilate isomerase (PRAI) catalyzes the fourth step of the tryptophan biosynthesis, the conversion of N-(5'- phosphoribosyl)-anthranilate (PRA) to 1-(o-carboxyphenylamino)- 1-deoxyribulose 5-phosphate (CdRP). Most PRAIs are monomeric, monofunctional and thermolabile, but in some thermophile organisms PRAI is dimeric for reasons of stability and in others it is fused to other components of the tryptophan biosynthesis pathway to form multifunctional enzymes.
Probab=51.89 E-value=89 Score=26.33 Aligned_cols=50 Identities=16% Similarity=0.138 Sum_probs=30.5
Q ss_pred HHHHHHHhcCCCccceEeeecCCCccCCCCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeeEeecCCChhhH
Q 021264 95 ALDNTLQDLQIDYVDLYLIHWPARMKKGSVGFNPENLLPLDIPSTWRAMEALYDSGKARAIGVCNFSTKKL 165 (315)
Q Consensus 95 ~ve~sL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~L~~lk~~GkIr~iGvS~~~~~~l 165 (315)
.+.+....++ +|.++||..+. .+..+.+.+......|+.+|++++....+
T Consensus 64 ~i~~ia~~~~---~d~Vqlhg~e~------------------~~~~~~l~~~~~~~~i~~i~~~~~~~~~~ 113 (203)
T cd00405 64 EILEIAEELG---LDVVQLHGDES------------------PEYCAQLRARLGLPVIKAIRVKDEEDLEK 113 (203)
T ss_pred HHHHHHHhcC---CCEEEECCCCC------------------HHHHHHHHhhcCCcEEEEEecCChhhHHH
Confidence 3444455554 78999996431 22344444444456899999998765443
No 67
>cd00740 MeTr MeTr subgroup of pterin binding enzymes. This family includes cobalamin-dependent methyltransferases such as methyltetrahydrofolate, corrinoid iron-sulfur protein methyltransferase (MeTr) and methionine synthase (MetH). Cobalamin-dependent methyltransferases catalyze the transfer of a methyl group via a methyl- cob(III)amide intermediate. These include MeTr, a functional heterodimer, and the folate binding domain of MetH.
Probab=51.19 E-value=1.4e+02 Score=26.37 Aligned_cols=104 Identities=11% Similarity=0.026 Sum_probs=62.6
Q ss_pred CCCCcHHHHHHHHHHhcCCCccceEeeecCCCccCCCCCCCCCCCCCCC-HHHHHHHHHHHHhcCCeeeEeecCCChhhH
Q 021264 87 LAPKDVPEALDNTLQDLQIDYVDLYLIHWPARMKKGSVGFNPENLLPLD-IPSTWRAMEALYDSGKARAIGVCNFSTKKL 165 (315)
Q Consensus 87 ~~~~~i~~~ve~sL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~-~~~~~~~L~~lk~~GkIr~iGvS~~~~~~l 165 (315)
.+++.+.+..++.++ -|.|+||+=. .|.. .+ .++.-+.+..+++.-.+ -|.+-+++++.+
T Consensus 23 ~~~d~~~~~A~~~~~-~GAdiIDIG~--~~~~---------------~~~~ee~~r~v~~i~~~~~~-piSIDT~~~~v~ 83 (252)
T cd00740 23 EDYDEALDVARQQVE-GGAQILDLNV--DYGG---------------LDGVSAMKWLLNLLATEPTV-PLMLDSTNWEVI 83 (252)
T ss_pred CCHHHHHHHHHHHHH-CCCCEEEECC--CCCC---------------CCHHHHHHHHHHHHHHhcCC-cEEeeCCcHHHH
Confidence 345566666666665 5999999864 2221 22 23333333333332222 489999999999
Q ss_pred HHHHHhcCCCCcccccccCcc-cchHHHHHHHHHcCceEEEecCC
Q 021264 166 GDLLEIARVPPAVNQVECHSS-WQQQKLHAFCKSKGVHLSGYSPL 209 (315)
Q Consensus 166 ~~~~~~~~~~~~~~q~~~n~~-~~~~~~~~~~~~~gi~v~~~~pl 209 (315)
+++++.+.....++-+..... .+...+++.++++|..++.+..-
T Consensus 84 e~aL~~~~G~~iINsIs~~~~~e~~~~~~~~~~~~~~~vV~m~~~ 128 (252)
T cd00740 84 EAGLKCCQGKCVVNSINLEDGEERFLKVARLAKEHGAAVVVLAFD 128 (252)
T ss_pred HHHHhhCCCCcEEEeCCCCCCccccHHHHHHHHHhCCCEEEeccC
Confidence 999987433333333332211 12367889999999999998543
No 68
>PRK08195 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase,; Validated
Probab=50.07 E-value=2.1e+02 Score=26.44 Aligned_cols=26 Identities=19% Similarity=0.038 Sum_probs=22.7
Q ss_pred CcCCcchHHHHHHHHHHhCCcEEecC
Q 021264 24 WQADPGIVGNAVDVAIKAGYRHIDCA 49 (315)
Q Consensus 24 ~~~~~~~~~~~l~~A~~~Gi~~~DtA 49 (315)
|+++.++..++++..-+.||..++.+
T Consensus 20 ~~f~~~~~~~i~~~L~~aGv~~IEvg 45 (337)
T PRK08195 20 HQYTLEQVRAIARALDAAGVPVIEVT 45 (337)
T ss_pred CccCHHHHHHHHHHHHHcCCCEEEee
Confidence 45666999999999999999999994
No 69
>PRK12581 oxaloacetate decarboxylase; Provisional
Probab=49.53 E-value=2.6e+02 Score=27.27 Aligned_cols=123 Identities=15% Similarity=0.113 Sum_probs=68.0
Q ss_pred cccCcCCcchHHHHHHHHHHhCCcEEecCCCCCCHHHHHHHHHHhhhcCCcCCCCeEEeeccCCCCCCCCcHHHHHHHHH
Q 021264 21 LGTWQADPGIVGNAVDVAIKAGYRHIDCARLYLNEKEIGFVLKKLFEDGVVKREDLWITSKLWCTDLAPKDVPEALDNTL 100 (315)
Q Consensus 21 lG~~~~~~~~~~~~l~~A~~~Gi~~~DtA~~Ygse~~lG~~l~~~~~~~~~~R~~~~i~tK~~~~~~~~~~i~~~ve~sL 100 (315)
+|.-..+++-....++.|.+.||..|=+.++--....+-.+++..-+.| ..-.+.|+-... +.++.+.+.+.+++ +
T Consensus 97 vgy~~ypddvv~~fv~~a~~~Gidi~Rifd~lnd~~n~~~ai~~ak~~G--~~~~~~i~yt~s-p~~t~~y~~~~a~~-l 172 (468)
T PRK12581 97 LGYRHYADDIVDKFISLSAQNGIDVFRIFDALNDPRNIQQALRAVKKTG--KEAQLCIAYTTS-PVHTLNYYLSLVKE-L 172 (468)
T ss_pred cCccCCcchHHHHHHHHHHHCCCCEEEEcccCCCHHHHHHHHHHHHHcC--CEEEEEEEEEeC-CcCcHHHHHHHHHH-H
Confidence 4444456677788899999999988766655433333334443321113 111233333322 23333445454444 5
Q ss_pred HhcCCCccceEeeecCCCccCCCCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeeEeecCCChhhH
Q 021264 101 QDLQIDYVDLYLIHWPARMKKGSVGFNPENLLPLDIPSTWRAMEALYDSGKARAIGVCNFSTKKL 165 (315)
Q Consensus 101 ~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~L~~lk~~GkIr~iGvS~~~~~~l 165 (315)
..+|. |.+.|-...-. ..+.++.+.+..+++...+ -||+-.|+...+
T Consensus 173 ~~~Ga---d~I~IkDtaG~--------------l~P~~v~~Lv~alk~~~~~-pi~~H~Hnt~Gl 219 (468)
T PRK12581 173 VEMGA---DSICIKDMAGI--------------LTPKAAKELVSGIKAMTNL-PLIVHTHATSGI 219 (468)
T ss_pred HHcCC---CEEEECCCCCC--------------cCHHHHHHHHHHHHhccCC-eEEEEeCCCCcc
Confidence 56775 44544322211 5667788888888776554 489888875433
No 70
>PF02401 LYTB: LytB protein; InterPro: IPR003451 Terpenes are among the largest groups of natural products and include compounds such as vitamins, cholesterol and carotenoids. The biosynthesis of all terpenoids begins with one or both of the two C5 precursors of the pathway: isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). In animals, fungi, and certain bacteria, the synthesis of IPP and DMAPP occurs via the well-known mevalonate pathway, however, a second, nonmevalonate terpenoid pathway has been identified in many eubacteria, algae and the chloroplasts of higher plants []. LytB(IspH) catalyses the conversion of 1-hydroy-2-methyl-2-(E)-butenyl 4-diphosphate into IPP and DMAPP in this second pathway The enzyme appears to be responsible for a branch-step in the nonmevalonate pathway, in that IPP and DMAPP are produced in parallel from a single precursor although the exact mechanism of this is not currently fully understood []. Escherichia coli LytB protein had been found to regulate the activity of RelA (guanosine 3',5'-bispyrophosphate synthetase I), which in turn controls the level of a regulatory metabolite. It is involved in penicillin tolerance and the stringent response [].; GO: 0019288 isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway, 0055114 oxidation-reduction process; PDB: 3DNF_B 3SZL_B 3KE8_B 3KEF_B 3SZU_A 3KEL_A 3F7T_B 3KE9_B 3KEM_B 3T0G_A ....
Probab=49.09 E-value=45 Score=30.11 Aligned_cols=114 Identities=16% Similarity=0.160 Sum_probs=66.0
Q ss_pred HHHHHh--cCCeeeEeecCCChhhHHHHHHhcCC-CCccc-ccccCccc----chHHHHHHHHHcCceEEEecCCCCCCC
Q 021264 143 MEALYD--SGKARAIGVCNFSTKKLGDLLEIARV-PPAVN-QVECHSSW----QQQKLHAFCKSKGVHLSGYSPLGSPGT 214 (315)
Q Consensus 143 L~~lk~--~GkIr~iGvS~~~~~~l~~~~~~~~~-~~~~~-q~~~n~~~----~~~~~~~~~~~~gi~v~~~~pl~~gg~ 214 (315)
++.+.. .+++..+.=++++.+...++.+...- .+... .+.=..+. |+..+.+++++-++-++.-+.-.
T Consensus 146 ~~~l~~~~~~kv~vvsQTT~~~~~~~~i~~~l~~~~~~~~~~~~nTIC~aT~~RQ~a~~~La~~vD~miVIGg~~S---- 221 (281)
T PF02401_consen 146 VEKLPISDPKKVAVVSQTTQSVEKFEEIVEALKKRFPELEGPVFNTICYATQNRQEAARELAKEVDAMIVIGGKNS---- 221 (281)
T ss_dssp HHHGGGSSTTCEEEEE-TTS-HHHHHHHHHHHHHHSTCEE-SCC-S--CHHHHHHHHHHHHHCCSSEEEEES-TT-----
T ss_pred hcccCCCCCCeEEEEEeecccHHHHHHHHHHHHHhCccccCCCCCCCCHhHHHHHHHHHHHHhhCCEEEEecCCCC----
Confidence 444443 34888888888888777766654321 11111 12222222 23667888888786666533332
Q ss_pred CCCccccCCchHHHHHHHHhCC------CHHHHHHHHHhhcC-CeeecCCCCHHHHHHhh
Q 021264 215 RWIKSDVLRHPVLKTAAEKLGK------TPAQVALRWGLQMG-HSVLPKSTNEARIKENF 267 (315)
Q Consensus 215 ~~~~~~~~~~~~l~~la~~~~~------s~aq~al~~~l~~~-~~~i~G~~~~~~l~~nl 267 (315)
-....|.++|++.+. ++.++...|..... +.+..|+|+|+.+-+.+
T Consensus 222 -------sNT~kL~eia~~~~~~t~~Ie~~~el~~~~l~~~~~VGItaGASTP~~ii~eV 274 (281)
T PF02401_consen 222 -------SNTRKLAEIAKEHGKPTYHIETADELDPEWLKGVKKVGITAGASTPDWIIEEV 274 (281)
T ss_dssp -------HHHHHHHHHHHHCTTCEEEESSGGG--HHHHTT-SEEEEEE-TTS-HHHHHHH
T ss_pred -------ccHHHHHHHHHHhCCCEEEeCCccccCHhHhCCCCEEEEEccCCCCHHHHHHH
Confidence 123578999999874 67899999998776 78889999999876654
No 71
>PRK13352 thiamine biosynthesis protein ThiC; Provisional
Probab=48.87 E-value=2.5e+02 Score=26.86 Aligned_cols=148 Identities=21% Similarity=0.183 Sum_probs=83.7
Q ss_pred CCcchHHHHHHHHHHhCCc-EEecCCCCCCHHHHHHHH-HHh-hhcCCcCCCCeEEee--c-cCCCCCCCCcHHHHHHHH
Q 021264 26 ADPGIVGNAVDVAIKAGYR-HIDCARLYLNEKEIGFVL-KKL-FEDGVVKREDLWITS--K-LWCTDLAPKDVPEALDNT 99 (315)
Q Consensus 26 ~~~~~~~~~l~~A~~~Gi~-~~DtA~~Ygse~~lG~~l-~~~-~~~~~~~R~~~~i~t--K-~~~~~~~~~~i~~~ve~s 99 (315)
.+.+.-.+-++.|.+.|-. .-|.+. .|.-..+-+.+ +.. +.=|-+|=-+.++-. | ....+.+++.+-+.+|+-
T Consensus 74 ~d~~~E~~K~~~A~~~GADtiMDLSt-ggdl~~iR~~il~~s~vpvGTVPiYqa~~~~~~k~~~~~~mt~d~~~~~ie~q 152 (431)
T PRK13352 74 SDIEEELEKAKVAVKYGADTIMDLST-GGDLDEIRRAIIEASPVPVGTVPIYQAAVEAARKYGSVVDMTEDDLFDVIEKQ 152 (431)
T ss_pred CCHHHHHHHHHHHHHcCCCeEeeccC-CCCHHHHHHHHHHcCCCCCcChhHHHHHHHHHhcCCChhhCCHHHHHHHHHHH
Confidence 3445555668899999975 566653 33322122222 211 000000000000000 0 022356677777777776
Q ss_pred HHhcCCCccceEeeecCCCccCCCCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeeEeecCCChhhHHHHHHhcCCCCccc
Q 021264 100 LQDLQIDYVDLYLIHWPARMKKGSVGFNPENLLPLDIPSTWRAMEALYDSGKARAIGVCNFSTKKLGDLLEIARVPPAVN 179 (315)
Q Consensus 100 L~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~L~~lk~~GkIr~iGvS~~~~~~l~~~~~~~~~~~~~~ 179 (315)
.+ +=+|++-+|.- -..+.++.++++|+ ..|+-+-...-+........
T Consensus 153 a~----~GVDfmTiHcG---------------------i~~~~~~~~~~~~R--~~giVSRGGs~~~~WM~~n~------ 199 (431)
T PRK13352 153 AK----DGVDFMTIHCG---------------------VTRETLERLKKSGR--IMGIVSRGGSFLAAWMLHNN------ 199 (431)
T ss_pred HH----hCCCEEEEccc---------------------hhHHHHHHHHhcCC--ccCeecCCHHHHHHHHHHcC------
Confidence 65 45899999952 23678999999986 46777777666655544322
Q ss_pred ccccCcccch-HHHHHHHHHcCceEEEecCC
Q 021264 180 QVECHSSWQQ-QKLHAFCKSKGVHLSGYSPL 209 (315)
Q Consensus 180 q~~~n~~~~~-~~~~~~~~~~gi~v~~~~pl 209 (315)
.-|++... +++++.|++++|.+.---.|
T Consensus 200 --~ENPlye~fD~lLeI~~~yDVtlSLGDgl 228 (431)
T PRK13352 200 --KENPLYEHFDYLLEILKEYDVTLSLGDGL 228 (431)
T ss_pred --CcCchHHHHHHHHHHHHHhCeeeeccCCc
Confidence 23555555 78999999999987654444
No 72
>TIGR02311 HpaI 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase. This model represents the aldolase which performs the final step unique to the 4-hydroxyphenylacetic acid catabolism pathway in which 2,4-dihydroxyhept-2-ene-1,7-dioic acid is split into pyruvate and succinate-semialdehyde. The gene for enzyme is generally found adjacent to other genes for this pathway organized into an operon.
Probab=48.71 E-value=1.9e+02 Score=25.45 Aligned_cols=101 Identities=8% Similarity=-0.010 Sum_probs=58.4
Q ss_pred HHHHHhcCCee-eEeecCCChhhHHHHHHhcCCCCcccccccCcccch--HHHHHHHHHcCceEEEecCCCCCCCCCCcc
Q 021264 143 MEALYDSGKAR-AIGVCNFSTKKLGDLLEIARVPPAVNQVECHSSWQQ--QKLHAFCKSKGVHLSGYSPLGSPGTRWIKS 219 (315)
Q Consensus 143 L~~lk~~GkIr-~iGvS~~~~~~l~~~~~~~~~~~~~~q~~~n~~~~~--~~~~~~~~~~gi~v~~~~pl~~gg~~~~~~ 219 (315)
|.+.-++|+.- ...+...++..++.+ ...+.++.++=.+-++.+.+ ..++..++..|+.++..-|-..
T Consensus 3 lk~~l~~g~~~~g~~~~~~~p~~~e~~-~~~g~D~v~iDlEH~~~~~~~~~~~~~a~~~~g~~~~VRv~~~~-------- 73 (249)
T TIGR02311 3 FKQALKEGQPQIGLWLGLADPYAAEIC-AGAGFDWLLIDGEHAPNDVRTILSQLQALAPYPSSPVVRPAIGD-------- 73 (249)
T ss_pred HHHHHHCCCceEEEEEeCCCcHHHHHH-HhcCCCEEEEeccCCCCCHHHHHHHHHHHHhcCCCcEEECCCCC--------
Confidence 33444557742 233344455555544 44556555554554554433 3477778788888777754421
Q ss_pred ccCCchHHHHHHHHhCCCHHHHHHHHHhhcC--CeeecCCCCHHHHHHhhcccCc
Q 021264 220 DVLRHPVLKTAAEKLGKTPAQVALRWGLQMG--HSVLPKSTNEARIKENFDIFDW 272 (315)
Q Consensus 220 ~~~~~~~l~~la~~~~~s~aq~al~~~l~~~--~~~i~G~~~~~~l~~nl~a~~~ 272 (315)
+. -++.++..| ..++|-..+++++++.+++..+
T Consensus 74 ------------------~~--~i~~~Ld~Ga~gIivP~v~s~e~a~~~v~~~~y 108 (249)
T TIGR02311 74 ------------------PV--LIKQLLDIGAQTLLVPMIETAEQAEAAVAATRY 108 (249)
T ss_pred ------------------HH--HHHHHhCCCCCEEEecCcCCHHHHHHHHHHcCC
Confidence 11 456677766 3566777888888877776664
No 73
>PRK13958 N-(5'-phosphoribosyl)anthranilate isomerase; Provisional
Probab=48.69 E-value=53 Score=28.09 Aligned_cols=68 Identities=15% Similarity=0.122 Sum_probs=42.0
Q ss_pred HHHhcCCCccceEeeecCCCccCCCCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeeEeec-CCChhhHHHHHHhcCCCCc
Q 021264 99 TLQDLQIDYVDLYLIHWPARMKKGSVGFNPENLLPLDIPSTWRAMEALYDSGKARAIGVC-NFSTKKLGDLLEIARVPPA 177 (315)
Q Consensus 99 sL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~L~~lk~~GkIr~iGvS-~~~~~~l~~~~~~~~~~~~ 177 (315)
.+..+|.|++=+++...--+. .+.+.+-+....+ .+.++.+||. |.+++.+.++++. ..++
T Consensus 16 ~~~~~GaD~iGfIf~~~SpR~--------------V~~~~a~~i~~~~--~~~~~~VgVf~~~~~~~i~~~~~~--~~~d 77 (207)
T PRK13958 16 AASQLPIDAIGFIHYEKSKRH--------------QTITQIKKLASAV--PNHIDKVCVVVNPDLTTIEHILSN--TSIN 77 (207)
T ss_pred HHHHcCCCEEEEecCCCCccc--------------CCHHHHHHHHHhC--CCCCCEEEEEeCCCHHHHHHHHHh--CCCC
Confidence 566799999988743321111 3444333333333 2457889986 6677888877765 4458
Q ss_pred ccccccC
Q 021264 178 VNQVECH 184 (315)
Q Consensus 178 ~~q~~~n 184 (315)
++|++-.
T Consensus 78 ~vQLHG~ 84 (207)
T PRK13958 78 TIQLHGT 84 (207)
T ss_pred EEEECCC
Confidence 9999863
No 74
>PF06506 PrpR_N: Propionate catabolism activator; InterPro: IPR010524 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. This entry represents a domain found at the N terminus of several sigma54- dependent transcriptional activators including PrpR, which activates catabolism of propionate. In Salmonella enterica subsp. enterica serovar Typhimurium, PrpR acts as a sensor of 2-methylcitrate (2-MC), an intermediate of the 2-methylcitric acid cycle used by this bacterium to convert propionate to pyruvate []. ; GO: 0000156 two-component response regulator activity, 0003677 DNA binding, 0005524 ATP binding, 0000160 two-component signal transduction system (phosphorelay); PDB: 2Q5C_A 2PJU_A.
Probab=48.69 E-value=31 Score=28.52 Aligned_cols=70 Identities=19% Similarity=0.136 Sum_probs=43.0
Q ss_pred CCHHHHHHHHHHHHhcC-CeeeEeecCCChhhHHHHHHhcCCCCcccccccCcccchHHHHHHHHHcCceEEEe
Q 021264 134 LDIPSTWRAMEALYDSG-KARAIGVCNFSTKKLGDLLEIARVPPAVNQVECHSSWQQQKLHAFCKSKGVHLSGY 206 (315)
Q Consensus 134 ~~~~~~~~~L~~lk~~G-kIr~iGvS~~~~~~l~~~~~~~~~~~~~~q~~~n~~~~~~~~~~~~~~~gi~v~~~ 206 (315)
....+++++|..+++.| +|..+|..+... .+..+.+..+. .+.+..|+-...-...+..++..|+.++.-
T Consensus 61 ~s~~Dil~al~~a~~~~~~Iavv~~~~~~~-~~~~~~~ll~~--~i~~~~~~~~~e~~~~i~~~~~~G~~viVG 131 (176)
T PF06506_consen 61 ISGFDILRALAKAKKYGPKIAVVGYPNIIP-GLESIEELLGV--DIKIYPYDSEEEIEAAIKQAKAEGVDVIVG 131 (176)
T ss_dssp --HHHHHHHHHHCCCCTSEEEEEEESS-SC-CHHHHHHHHT---EEEEEEESSHHHHHHHHHHHHHTT--EEEE
T ss_pred CCHhHHHHHHHHHHhcCCcEEEEecccccH-HHHHHHHHhCC--ceEEEEECCHHHHHHHHHHHHHcCCcEEEC
Confidence 45678999999998776 677777777653 24444444333 455555543332267888899999998874
No 75
>TIGR00735 hisF imidazoleglycerol phosphate synthase, cyclase subunit.
Probab=48.63 E-value=1.9e+02 Score=25.40 Aligned_cols=91 Identities=8% Similarity=0.093 Sum_probs=49.6
Q ss_pred HHHHHHHhcCCCccceEeeecCCCccCCCCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeeEeecC-CChhhHHHHHHhcC
Q 021264 95 ALDNTLQDLQIDYVDLYLIHWPARMKKGSVGFNPENLLPLDIPSTWRAMEALYDSGKARAIGVCN-FSTKKLGDLLEIAR 173 (315)
Q Consensus 95 ~ve~sL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~L~~lk~~GkIr~iGvS~-~~~~~l~~~~~~~~ 173 (315)
.+-+-|+.+| +|.+.+|..+.. + ....--++.+.++++.-.+.-|.... .+++.+.++++..+
T Consensus 159 ~~~~~l~~~G---~~~iivt~i~~~--g-----------~~~g~~~~~~~~i~~~~~ipvia~GGi~s~~di~~~~~~g~ 222 (254)
T TIGR00735 159 EWAKEVEKLG---AGEILLTSMDKD--G-----------TKSGYDLELTKAVSEAVKIPVIASGGAGKPEHFYEAFTKGK 222 (254)
T ss_pred HHHHHHHHcC---CCEEEEeCcCcc--c-----------CCCCCCHHHHHHHHHhCCCCEEEeCCCCCHHHHHHHHHcCC
Confidence 4445556666 667777765442 1 11111255566666655566565554 35678887777543
Q ss_pred CCCcccccccCcccc---hHHHHHHHHHcCceE
Q 021264 174 VPPAVNQVECHSSWQ---QQKLHAFCKSKGVHL 203 (315)
Q Consensus 174 ~~~~~~q~~~n~~~~---~~~~~~~~~~~gi~v 203 (315)
. +.+.+--.+... -.++.+.|+++|+.+
T Consensus 223 ~--dgv~~g~a~~~~~~~~~~~~~~~~~~gi~~ 253 (254)
T TIGR00735 223 A--DAALAASVFHYREITIGEVKEYLAERGIPV 253 (254)
T ss_pred c--ceeeEhHHHhCCCCCHHHHHHHHHHCCCcc
Confidence 3 232221111111 267888999888764
No 76
>PRK14017 galactonate dehydratase; Provisional
Probab=48.61 E-value=58 Score=30.60 Aligned_cols=68 Identities=21% Similarity=0.192 Sum_probs=51.6
Q ss_pred HHHHHHHHhcCCee-eEeecCCChhhHHHHHHhcCCCCcccccccCccc---chHHHHHHHHHcCceEEEecCC
Q 021264 140 WRAMEALYDSGKAR-AIGVCNFSTKKLGDLLEIARVPPAVNQVECHSSW---QQQKLHAFCKSKGVHLSGYSPL 209 (315)
Q Consensus 140 ~~~L~~lk~~GkIr-~iGvS~~~~~~l~~~~~~~~~~~~~~q~~~n~~~---~~~~~~~~~~~~gi~v~~~~pl 209 (315)
++.+.+|++...+. ..|=|.++...+..+++... .+++|...+.+- +..++.+.|+.+|+.++.++..
T Consensus 217 ~~~~~~L~~~~~~pIa~dEs~~~~~~~~~li~~~a--~d~v~~d~~~~GGit~~~~ia~~A~~~gi~~~~h~~~ 288 (382)
T PRK14017 217 AEALPEIAAQTSIPIATGERLFSRWDFKRVLEAGG--VDIIQPDLSHAGGITECRKIAAMAEAYDVALAPHCPL 288 (382)
T ss_pred HHHHHHHHhcCCCCEEeCCccCCHHHHHHHHHcCC--CCeEecCccccCCHHHHHHHHHHHHHcCCeEeecCCC
Confidence 57788888887665 66777788888888887644 477888766542 2368999999999999988654
No 77
>PRK05414 urocanate hydratase; Provisional
Probab=48.45 E-value=64 Score=31.50 Aligned_cols=129 Identities=16% Similarity=0.105 Sum_probs=87.3
Q ss_pred HHHHHHHHHhCCcEEe--cCCCC---C-------CHHHHHHHHHHhhhcCCcCCCCeEEeeccCCCCCC-CC--------
Q 021264 32 GNAVDVAIKAGYRHID--CARLY---L-------NEKEIGFVLKKLFEDGVVKREDLWITSKLWCTDLA-PK-------- 90 (315)
Q Consensus 32 ~~~l~~A~~~Gi~~~D--tA~~Y---g-------se~~lG~~l~~~~~~~~~~R~~~~i~tK~~~~~~~-~~-------- 90 (315)
-+-.+..-+.|++.+= ||..| | .-+++..+-++.+. + --+-++||++-++.-... |.
T Consensus 115 ~e~f~~l~~~Gl~mYGQMTAGsw~YIG~QGIvqGTyeT~~~a~rk~f~-g-~L~G~~~lTaGLGGMgGAQPlA~~mag~v 192 (556)
T PRK05414 115 WEHFNELEAKGLTMYGQMTAGSWIYIGSQGIVQGTYETFAEAARQHFG-G-DLAGRLVLTAGLGGMGGAQPLAATMAGAV 192 (556)
T ss_pred HHHHHHHHHcccccccCccccceeEEcCceeeecHHHHHHHHHHHhcC-C-CCceeEEEEecCCccccccHHHHHhcCce
Confidence 3567778888988654 45443 2 25566677777653 2 247788898888642110 00
Q ss_pred --cHHHHHHHHHHhcCCCccceEeeecCCCccCCCCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeeEeecCCChhhHHHH
Q 021264 91 --DVPEALDNTLQDLQIDYVDLYLIHWPARMKKGSVGFNPENLLPLDIPSTWRAMEALYDSGKARAIGVCNFSTKKLGDL 168 (315)
Q Consensus 91 --~i~~~ve~sL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~L~~lk~~GkIr~iGvS~~~~~~l~~~ 168 (315)
.++-.-.+.-+|+.+.|+|.+- .++++.++..++.+++|+...||+-..-.+.++++
T Consensus 193 ~i~vEvd~~ri~kR~~~gyld~~~---------------------~~Ldeal~~~~~a~~~~~~~SIg~~GNaadv~~~l 251 (556)
T PRK05414 193 CLAVEVDESRIDKRLRTGYLDEKA---------------------DDLDEALALAEEAKAAGEPLSIGLLGNAADVLPEL 251 (556)
T ss_pred EEEEEECHHHHHHHHhCCcceeEc---------------------CCHHHHHHHHHHHHHcCCceEEEEeccHHHHHHHH
Confidence 0112234556788999999872 56899999999999999999999999888888888
Q ss_pred HHhcC-CCCccccccc
Q 021264 169 LEIAR-VPPAVNQVEC 183 (315)
Q Consensus 169 ~~~~~-~~~~~~q~~~ 183 (315)
++..- +++..-|.+.
T Consensus 252 ~~~~i~pDlvtDQTSa 267 (556)
T PRK05414 252 VRRGIRPDLVTDQTSA 267 (556)
T ss_pred HHcCCCCCccCcCccc
Confidence 87642 3445556655
No 78
>TIGR01862 N2-ase-Ialpha nitrogenase component I, alpha chain. This model represents the alpha chain of all three varieties (Mo-Fe, V-Fe, and Fe-Fe) of component I of nitrogenase.
Probab=48.44 E-value=2.6e+02 Score=26.93 Aligned_cols=144 Identities=10% Similarity=0.063 Sum_probs=78.9
Q ss_pred CCCCHHHHHHHHHHhhhcCCcCC-CCeEEeeccCCCCCCCCcHHHHHHHHHHhcCCCccceEeeecCCCccCCCCCCCCC
Q 021264 51 LYLNEKEIGFVLKKLFEDGVVKR-EDLWITSKLWCTDLAPKDVPEALDNTLQDLQIDYVDLYLIHWPARMKKGSVGFNPE 129 (315)
Q Consensus 51 ~Ygse~~lG~~l~~~~~~~~~~R-~~~~i~tK~~~~~~~~~~i~~~ve~sL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~ 129 (315)
.||.+..|-++|++..++. ++ +-++|.|-. .....-+.+..-+++.-++++ +.++.+|.|........
T Consensus 98 V~Gg~~~L~~aI~~~~~~~--~p~~~I~V~~tC-~~~liGdDi~~v~~~~~~~~~---~pvi~v~t~gf~g~~~~----- 166 (443)
T TIGR01862 98 VFGGEKKLKKLIHEAFTEF--PLIKAISVYATC-PTGLIGDDIEAVAKEVSKEIG---KDVVAVNCPGFAGVSQS----- 166 (443)
T ss_pred eeCcHHHHHHHHHHHHHhC--CccceEEEECCC-hHHHhccCHHHHHHHHHHhcC---CCEEEEecCCccCCccc-----
Confidence 4788888888988876544 44 445565554 334445556666666555554 78999998877431100
Q ss_pred CCCCCCHHHHHHH-HHHHH--------hcCCeeeEeecCC--ChhhHHHHHHhcCCCCcccccc--------------cC
Q 021264 130 NLLPLDIPSTWRA-MEALY--------DSGKARAIGVCNF--STKKLGDLLEIARVPPAVNQVE--------------CH 184 (315)
Q Consensus 130 ~~~~~~~~~~~~~-L~~lk--------~~GkIr~iGvS~~--~~~~l~~~~~~~~~~~~~~q~~--------------~n 184 (315)
.......++ ++.+. ++++|--||-.++ +.+.+.++++..++.+...-.. +|
T Consensus 167 ----~G~~~a~~al~~~l~~~~~~~~~~~~~VNiig~~~~~~d~~el~~lL~~~Gl~v~~~~~~~~t~eei~~~~~A~ln 242 (443)
T TIGR01862 167 ----KGHHIANIAVINDKVGTREKEITTEYDVNIIGEYNIGGDAWVMRIYLEEMGIQVVATFTGDGTYDEIRLMHKAKLN 242 (443)
T ss_pred ----hHHHHHHHHHHHHHhCCCCcccCCCCeEEEEccCcCcccHHHHHHHHHHcCCeEEEEECCCCCHHHHHhcccCCEE
Confidence 112223332 33342 3467888885554 2346667777666543221111 12
Q ss_pred ccc-ch--HHHHHHH-HHcCceEEEecCC
Q 021264 185 SSW-QQ--QKLHAFC-KSKGVHLSGYSPL 209 (315)
Q Consensus 185 ~~~-~~--~~~~~~~-~~~gi~v~~~~pl 209 (315)
+.. +. ....++. +++|++.+...|+
T Consensus 243 iv~~~~~~~~~A~~L~er~GiP~~~~~p~ 271 (443)
T TIGR01862 243 LVHCARSANYIANELEERYGIPWMKIDFF 271 (443)
T ss_pred EEEChHHHHHHHHHHHHHhCCCeEecccC
Confidence 221 11 1233333 4669999987765
No 79
>cd07943 DRE_TIM_HOA 4-hydroxy-2-oxovalerate aldolase, N-terminal catalytic TIM barrel domain. 4-hydroxy 2-ketovalerate aldolase (Also known as 4-hydroxy-2-ketovalerate aldolase and 4-hydroxy-2-oxopentanoate aldolase (HOA)) converts 4-hydroxy-2-oxopentanoate to acetaldehyde and pyruvate, the penultimate step in the meta-cleavage pathway for the degradation of phenols, cresols and catechol. This family includes the Escherichia coli MhpE aldolase, the Pseudomonas DmpG aldolase, and the Burkholderia xenovorans BphI pyruvate aldolase. In Pseudomonas, the DmpG aldolase tightly associates with a dehydrogenase (DmpF ) and is inactive without it. HOA has a canonical TIM-barrel fold with a C-terminal extension that forms a funnel leading to the active site. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate
Probab=47.84 E-value=1.3e+02 Score=26.52 Aligned_cols=103 Identities=11% Similarity=0.048 Sum_probs=56.0
Q ss_pred HHHHHHHHHHhcCCCccceEeeecCCCccCCCCCCCCCCCCCCCHHHHHHHHHHHHhc-CCeeeEeecC---CChhhHHH
Q 021264 92 VPEALDNTLQDLQIDYVDLYLIHWPARMKKGSVGFNPENLLPLDIPSTWRAMEALYDS-GKARAIGVCN---FSTKKLGD 167 (315)
Q Consensus 92 i~~~ve~sL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~L~~lk~~-GkIr~iGvS~---~~~~~l~~ 167 (315)
.+..+-+.|.++|+++|.+-+........ +... .....-++.++.+++. +..+...++. .....++.
T Consensus 23 ~k~~i~~~L~~~Gv~~iEvg~~~~~~~~~-----~~~~----~~~~~~~e~i~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 93 (263)
T cd07943 23 QVRAIARALDAAGVPLIEVGHGDGLGGSS-----LNYG----FAAHTDEEYLEAAAEALKQAKLGVLLLPGIGTVDDLKM 93 (263)
T ss_pred HHHHHHHHHHHcCCCEEEeecCCCCCCcc-----cccC----CCCCChHHHHHHHHHhccCCEEEEEecCCccCHHHHHH
Confidence 45677777999999999998653211100 0000 0111245566666433 3466666542 23455555
Q ss_pred HHHhcCCCCccccccc--CcccchHHHHHHHHHcCceEEEe
Q 021264 168 LLEIARVPPAVNQVEC--HSSWQQQKLHAFCKSKGVHLSGY 206 (315)
Q Consensus 168 ~~~~~~~~~~~~q~~~--n~~~~~~~~~~~~~~~gi~v~~~ 206 (315)
+.+. + ++.+.+.+ |..+.-.+.+++++++|..+...
T Consensus 94 a~~~-g--~~~iri~~~~s~~~~~~~~i~~ak~~G~~v~~~ 131 (263)
T cd07943 94 AADL-G--VDVVRVATHCTEADVSEQHIGAARKLGMDVVGF 131 (263)
T ss_pred HHHc-C--CCEEEEEechhhHHHHHHHHHHHHHCCCeEEEE
Confidence 5542 2 34444333 22222367899999999877664
No 80
>PRK14457 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=47.73 E-value=2.4e+02 Score=26.28 Aligned_cols=148 Identities=16% Similarity=0.197 Sum_probs=82.4
Q ss_pred HHHHHHHHHHhhhcCCcCCCCeEEeeccCCCCCCCCcHHHHHHHHHHhcC-CCccceEeeecCCCccCCCCCCCCCCCCC
Q 021264 55 EKEIGFVLKKLFEDGVVKREDLWITSKLWCTDLAPKDVPEALDNTLQDLQ-IDYVDLYLIHWPARMKKGSVGFNPENLLP 133 (315)
Q Consensus 55 e~~lG~~l~~~~~~~~~~R~~~~i~tK~~~~~~~~~~i~~~ve~sL~~Lg-~d~iDl~~lH~p~~~~~~~~~~~~~~~~~ 133 (315)
-..+-++++.....-.+....+.|+| +|. ++.+++-.+.-+++|+ .+....+-||.++......-......
T Consensus 164 ~~~v~~~i~~l~~~~~i~~r~itvST-~G~----~~~i~~L~~~~~~~~~~~~~~laiSLha~~~e~r~~i~p~~~~--- 235 (345)
T PRK14457 164 IDEVLAAIRCLNQDLGIGQRRITVST-VGV----PKTIPQLAELAFQRLGRLQFTLAVSLHAPNQKLRETLIPSAKN--- 235 (345)
T ss_pred HHHHHHHHHHHhcccCCccCceEEEC-CCc----hhhHHHHHhhhhhhcccCceEEEEEeCCCCHHHHHHhcCCccC---
Confidence 34455666554221113444677777 221 2234444444444443 23447788998877543211111111
Q ss_pred CCHHHHHHHHHH-HHhcCC---eeeEeecCC--ChhhHHHHHHhcC-CCCcccccccCcccch----------HHHHHHH
Q 021264 134 LDIPSTWRAMEA-LYDSGK---ARAIGVCNF--STKKLGDLLEIAR-VPPAVNQVECHSSWQQ----------QKLHAFC 196 (315)
Q Consensus 134 ~~~~~~~~~L~~-lk~~Gk---Ir~iGvS~~--~~~~l~~~~~~~~-~~~~~~q~~~n~~~~~----------~~~~~~~ 196 (315)
.+++++++++.+ +.+.|+ |+++=+.++ +.++++++.+... .+..++-++||++... ..+.+..
T Consensus 236 ~~l~~l~~~~~~y~~~~gr~I~iey~LIpGvNDs~e~a~~La~~l~~l~~~VnLIPynp~~~~~~~~ps~e~i~~f~~~L 315 (345)
T PRK14457 236 YPIENLLEDCRHYVAITGRRVSFEYILLGGVNDLPEHAEELANLLRGFQSHVNLIPYNPIDEVEFQRPSPKRIQAFQRVL 315 (345)
T ss_pred CCHHHHHHHHHHHHHHhCCEEEEEEEEECCcCCCHHHHHHHHHHHhcCCCeEEEecCCCCCCCCCCCCCHHHHHHHHHHH
Confidence 457788877766 455564 566666544 4577777766543 3456777888776421 2356667
Q ss_pred HHcCceEEEecCCC
Q 021264 197 KSKGVHLSGYSPLG 210 (315)
Q Consensus 197 ~~~gi~v~~~~pl~ 210 (315)
+++|+.+......+
T Consensus 316 ~~~Gi~vtvR~~~G 329 (345)
T PRK14457 316 EQRGVAVSVRASRG 329 (345)
T ss_pred HHCCCeEEEeCCCC
Confidence 77899888776663
No 81
>PF00682 HMGL-like: HMGL-like of this family is not conserved in other members. are a sub-families of this Pfam.; InterPro: IPR000891 Pyruvate carboxylase (6.4.1.1 from EC) (PC), a member of the biotin-dependent enzyme family, is involved in the gluconeogenesis by mediating the carboxylation of pyruvate to oxaloacetate. Biotin-dependent carboxylase enzymes perform a two step reaction. Enzyme-bound biotin is first carboxylated by bicarbonate and ATP and the carboxyl group temporarily bound to biotin is subsequently transferred to an acceptor substrate such as pyruvate []. PC has three functional domains: a biotin carboxylase (BC) domain, a carboxyltransferase (CT) domain which perform the second part of the reaction and a biotinyl domain [, ]. The mechanism by which the carboxyl group is transferred from the carboxybiotin to the pyruvate is not well understood. The pyruvate carboxyltransferase domain is also found in other pyruvate binding enzymes and acetyl-CoA dependent enzymes suggesting that this domain can be associated with different enzymatic activities. This domain is found towards the N-terminal region of various aldolase enzymes. This N-terminal TIM barrel domain [] interacts with the C-terminal domain. The C-terminal DmpG_comm domain (IPR012425 from INTERPRO) is thought to promote heterodimerisation with members of IPR003361 from INTERPRO to form a bifunctional aldolase-dehydrogenase []. ; GO: 0003824 catalytic activity; PDB: 3MP5_E 3MP3_E 2CW6_E 3MP4_D 3HBL_A 3HB9_C 3HO8_A 3BG5_C 1YDN_B 3RMJ_A ....
Probab=47.53 E-value=1.8e+02 Score=24.94 Aligned_cols=164 Identities=12% Similarity=0.097 Sum_probs=81.9
Q ss_pred cCCcchHHHHHHHHHHhCCcEEecC-CCCC--CHHHHHHHHHHhhhcCCcCCCCeEEeeccCCCCCCCCcHHHHHHHHHH
Q 021264 25 QADPGIVGNAVDVAIKAGYRHIDCA-RLYL--NEKEIGFVLKKLFEDGVVKREDLWITSKLWCTDLAPKDVPEALDNTLQ 101 (315)
Q Consensus 25 ~~~~~~~~~~l~~A~~~Gi~~~DtA-~~Yg--se~~lG~~l~~~~~~~~~~R~~~~i~tK~~~~~~~~~~i~~~ve~sL~ 101 (315)
.++.++..++++...+.||..+++. +..+ ..+.+....+.. +...+ ++.+. ...+.++..++ .++
T Consensus 10 ~~~~~~k~~i~~~L~~~Gv~~iEvg~~~~~~~~~~~v~~~~~~~------~~~~~--~~~~~---~~~~~i~~~~~-~~~ 77 (237)
T PF00682_consen 10 AFSTEEKLEIAKALDEAGVDYIEVGFPFASEDDFEQVRRLREAL------PNARL--QALCR---ANEEDIERAVE-AAK 77 (237)
T ss_dssp T--HHHHHHHHHHHHHHTTSEEEEEHCTSSHHHHHHHHHHHHHH------HSSEE--EEEEE---SCHHHHHHHHH-HHH
T ss_pred CcCHHHHHHHHHHHHHhCCCEEEEcccccCHHHHHHhhhhhhhh------ccccc--ceeee---ehHHHHHHHHH-hhH
Confidence 3667888899999999999999999 4443 133344333332 33333 33321 12233444444 334
Q ss_pred hcCCCccceEeeecCCCccCCCCCCCCCCCCCCC----HHHHHHHHHHHHhcCCeeeEeecCC---ChhhHHHHHHhcC-
Q 021264 102 DLQIDYVDLYLIHWPARMKKGSVGFNPENLLPLD----IPSTWRAMEALYDSGKARAIGVCNF---STKKLGDLLEIAR- 173 (315)
Q Consensus 102 ~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~----~~~~~~~L~~lk~~GkIr~iGvS~~---~~~~l~~~~~~~~- 173 (315)
..|.+.+.++.==++..... ....+ .+.+.+.++.+|+.|..-.+++... +++.+.++.+...
T Consensus 78 ~~g~~~i~i~~~~s~~~~~~---------~~~~~~~~~~~~~~~~v~~ak~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~ 148 (237)
T PF00682_consen 78 EAGIDIIRIFISVSDLHIRK---------NLNKSREEALERIEEAVKYAKELGYEVAFGCEDASRTDPEELLELAEALAE 148 (237)
T ss_dssp HTTSSEEEEEEETSHHHHHH---------HTCSHHHHHHHHHHHHHHHHHHTTSEEEEEETTTGGSSHHHHHHHHHHHHH
T ss_pred hccCCEEEecCcccHHHHHH---------hhcCCHHHHHHHHHHHHHHHHhcCCceEeCccccccccHHHHHHHHHHHHH
Confidence 67777776653211100000 00012 4456677788889999888887554 4444444333221
Q ss_pred CCCcccccc--cCcccch--HHHHHHHHHc----CceEEEecCC
Q 021264 174 VPPAVNQVE--CHSSWQQ--QKLHAFCKSK----GVHLSGYSPL 209 (315)
Q Consensus 174 ~~~~~~q~~--~n~~~~~--~~~~~~~~~~----gi~v~~~~pl 209 (315)
..++.+.+. +....|. .+++...++. .+++-++.-+
T Consensus 149 ~g~~~i~l~Dt~G~~~P~~v~~lv~~~~~~~~~~~l~~H~Hnd~ 192 (237)
T PF00682_consen 149 AGADIIYLADTVGIMTPEDVAELVRALREALPDIPLGFHAHNDL 192 (237)
T ss_dssp HT-SEEEEEETTS-S-HHHHHHHHHHHHHHSTTSEEEEEEBBTT
T ss_pred cCCeEEEeeCccCCcCHHHHHHHHHHHHHhccCCeEEEEecCCc
Confidence 122332222 1222222 4566666553 3666666666
No 82
>PRK09485 mmuM homocysteine methyltransferase; Provisional
Probab=47.32 E-value=2.2e+02 Score=25.83 Aligned_cols=213 Identities=13% Similarity=0.101 Sum_probs=116.3
Q ss_pred CcchHHHHHHHHHHhCCcEEecCCCCCC--------------HHHHHHHHH---HhhhcCCcCCCCeEEeeccCCCC---
Q 021264 27 DPGIVGNAVDVAIKAGYRHIDCARLYLN--------------EKEIGFVLK---KLFEDGVVKREDLWITSKLWCTD--- 86 (315)
Q Consensus 27 ~~~~~~~~l~~A~~~Gi~~~DtA~~Ygs--------------e~~lG~~l~---~~~~~~~~~R~~~~i~tK~~~~~--- 86 (315)
.++.+.++-+..+++|-+.+.|.....+ +++.-.+++ +...+ ..+.+++|+.-+++..
T Consensus 44 ~Pe~V~~vH~~yl~AGadiI~TnTy~a~~~~l~~~g~~~~~~~~l~~~av~lA~~a~~~--~~~~~~~VaGsiGP~g~~l 121 (304)
T PRK09485 44 NPELIYQVHLDYFRAGADCAITASYQATFQGFAARGLSEAEAEELIRRSVELAKEARDE--FWAEKPLVAGSVGPYGAYL 121 (304)
T ss_pred ChHHHHHHHHHHHHhCCCEEEeeccccCHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHh--hccCCceEEEecCCccccc
Confidence 4444566666778999999998765432 122222221 11100 1233588888887532
Q ss_pred -----------CCCCcHHHHHHHHHHhcCCCccceEeeecCCCccCCCCCCCCCCCCCCCHHHHHHHHHHHHhc--CCee
Q 021264 87 -----------LAPKDVPEALDNTLQDLQIDYVDLYLIHWPARMKKGSVGFNPENLLPLDIPSTWRAMEALYDS--GKAR 153 (315)
Q Consensus 87 -----------~~~~~i~~~ve~sL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~L~~lk~~--GkIr 153 (315)
.+.+.+++...+..+.|--..+|++++-.. .+..|...+++.+++. ++--
T Consensus 122 ~~~~~y~g~~~~~~~~~~~~~~~q~~~l~~~gvD~i~~ET~-----------------~~~~E~~~~~~~~~~~~~~~pv 184 (304)
T PRK09485 122 ADGSEYRGDYGLSEEELQDFHRPRIEALAEAGADLLACETI-----------------PNLDEAEALVELLKEEFPGVPA 184 (304)
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHHHhhCCCCEEEEecc-----------------CCHHHHHHHHHHHHHhcCCCcE
Confidence 234566677667777775566999998754 3356777777777755 5544
Q ss_pred eEeecCCC------hhhHHHHHHhc-C-CCCcccccccCcccchHHHHHHHHHc-CceEEEecCCCCCCCCCC-ccccCC
Q 021264 154 AIGVCNFS------TKKLGDLLEIA-R-VPPAVNQVECHSSWQQQKLHAFCKSK-GVHLSGYSPLGSPGTRWI-KSDVLR 223 (315)
Q Consensus 154 ~iGvS~~~------~~~l~~~~~~~-~-~~~~~~q~~~n~~~~~~~~~~~~~~~-gi~v~~~~pl~~gg~~~~-~~~~~~ 223 (315)
.+.++..+ ...+++++... . ..++.+-+++.-...-..+++...+. +..+++| |-+ |.... ....+.
T Consensus 185 ~is~~~~~~g~l~~G~~~~~~~~~l~~~~~~~~iGiNC~~p~~~~~~l~~~~~~~~~pl~~~-PNa--G~~~~~~~~~~~ 261 (304)
T PRK09485 185 WLSFTLRDGTHISDGTPLAEAAALLAASPQVVAVGVNCTAPELVTAAIAALRAVTDKPLVVY-PNS--GEVYDAVTKTWH 261 (304)
T ss_pred EEEEEeCCCCcCCCCCCHHHHHHHHhcCCCceEEEecCCCHHHHHHHHHHHHhccCCcEEEE-CCC--CCCCCCCCCccc
Confidence 55555422 12344444432 2 23577778876322224555555443 5566655 432 32111 011110
Q ss_pred chHHHHHHHHhCC-CHHHHHHHHHhhcCCeeecCC--CCHHHHHHhhccc
Q 021264 224 HPVLKTAAEKLGK-TPAQVALRWGLQMGHSVLPKS--TNEARIKENFDIF 270 (315)
Q Consensus 224 ~~~l~~la~~~~~-s~aq~al~~~l~~~~~~i~G~--~~~~~l~~nl~a~ 270 (315)
.. ... ..++.+.+|+.. +..+|=|| ++|+|+++..+++
T Consensus 262 ~~--------~~~~~~~~~~~~~~~~-G~~iiGGCCGttP~hI~al~~~l 302 (304)
T PRK09485 262 GP--------ADDASLGELAPEWYAA-GARLIGGCCRTTPEDIAALAAAL 302 (304)
T ss_pred CC--------CChHHHHHHHHHHHHc-CCeEEeeCCCCCHHHHHHHHHHh
Confidence 00 000 244667777554 77777666 8999998876543
No 83
>PF01487 DHquinase_I: Type I 3-dehydroquinase; InterPro: IPR001381 3-dehydroquinate dehydratase (4.2.1.10 from EC), or dehydroquinase, catalyzes the conversion of 3-dehydroquinate into 3-dehydroshikimate. It is the third step in the shikimate pathway for the biosynthesis of aromatic amino acids from chorismate. Two classes of dehydroquinases exist, known as types I and II. The best studied type I enzyme is from Escherichia coli (gene aroD) and related bacteria where it is a homodimeric protein. In fungi, dehydroquinase is part of a multifunctional enzyme which catalyzes five consecutive steps in the shikimate pathway. A histidine [] is involved in the catalytic mechanism.; GO: 0003855 3-dehydroquinate dehydratase activity; PDB: 2O7Q_A 2GPT_A 2O7S_A 1SFL_A 2OCZ_A 2OX1_C 1GQN_A 1QFE_B 1L9W_D 3L9C_A ....
Probab=47.29 E-value=1.8e+02 Score=24.84 Aligned_cols=75 Identities=17% Similarity=0.139 Sum_probs=40.9
Q ss_pred CcCCcchHHHHHHHHHHhCCcEEecCCCCCCHHHHHHHHHHhhhcCCcCCCCeEEeeccCCCCCCCCc--HHHHHHHHHH
Q 021264 24 WQADPGIVGNAVDVAIKAGYRHIDCARLYLNEKEIGFVLKKLFEDGVVKREDLWITSKLWCTDLAPKD--VPEALDNTLQ 101 (315)
Q Consensus 24 ~~~~~~~~~~~l~~A~~~Gi~~~DtA~~Ygse~~lG~~l~~~~~~~~~~R~~~~i~tK~~~~~~~~~~--i~~~ve~sL~ 101 (315)
+..++++-.+++..+++.|+.++|.=-....+. +....... ..+.+++++... .+.+|+. +...+++. +
T Consensus 70 ~~~~~~~~~~ll~~~~~~~~d~iDiE~~~~~~~-~~~~~~~~-----~~~~~iI~S~H~--f~~tp~~~~l~~~~~~~-~ 140 (224)
T PF01487_consen 70 FQGSEEEYLELLERAIRLGPDYIDIELDLFPDD-LKSRLAAR-----KGGTKIILSYHD--FEKTPSWEELIELLEEM-Q 140 (224)
T ss_dssp BSS-HHHHHHHHHHHHHHTSSEEEEEGGCCHHH-HHHHHHHH-----HTTSEEEEEEEE--SS---THHHHHHHHHHH-H
T ss_pred CcCCHHHHHHHHHHHHHcCCCEEEEEcccchhH-HHHHHHHh-----hCCCeEEEEecc--CCCCCCHHHHHHHHHHH-H
Confidence 456778888999999999999999854432222 22222111 146777777774 2333432 44444333 3
Q ss_pred hcCCCc
Q 021264 102 DLQIDY 107 (315)
Q Consensus 102 ~Lg~d~ 107 (315)
.+|.|.
T Consensus 141 ~~gadi 146 (224)
T PF01487_consen 141 ELGADI 146 (224)
T ss_dssp HTT-SE
T ss_pred hcCCCe
Confidence 566443
No 84
>cd03327 MR_like_2 Mandelate racemase (MR)-like subfamily of the enolase superfamily, subgroup 2. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. This subgroup's function is unknown.
Probab=47.13 E-value=78 Score=29.22 Aligned_cols=66 Identities=15% Similarity=0.136 Sum_probs=47.8
Q ss_pred HHHHHHHHhcCCee-eEeecCCChhhHHHHHHhcCCCCcccccccCccc---chHHHHHHHHHcCceEEEec
Q 021264 140 WRAMEALYDSGKAR-AIGVCNFSTKKLGDLLEIARVPPAVNQVECHSSW---QQQKLHAFCKSKGVHLSGYS 207 (315)
Q Consensus 140 ~~~L~~lk~~GkIr-~iGvS~~~~~~l~~~~~~~~~~~~~~q~~~n~~~---~~~~~~~~~~~~gi~v~~~~ 207 (315)
++.+.+|++...|. +.|=|.++...+.++++... .+++|...+..- ...++...|+.+|+.++.+.
T Consensus 211 ~~~~~~l~~~~~~pIa~gE~~~~~~~~~~~i~~~a--~d~i~~d~~~~GGit~~~~i~~~A~~~g~~~~~h~ 280 (341)
T cd03327 211 IEGYAELKKATGIPISTGEHEYTVYGFKRLLEGRA--VDILQPDVNWVGGITELKKIAALAEAYGVPVVPHA 280 (341)
T ss_pred HHHHHHHHhcCCCCeEeccCccCHHHHHHHHHcCC--CCEEecCccccCCHHHHHHHHHHHHHcCCeecccc
Confidence 66777888777666 66667778888888877543 477787765542 23678999999999987653
No 85
>COG0635 HemN Coproporphyrinogen III oxidase and related Fe-S oxidoreductases [Coenzyme metabolism]
Probab=46.18 E-value=84 Score=30.07 Aligned_cols=74 Identities=22% Similarity=0.283 Sum_probs=41.5
Q ss_pred CCCCCCcHHHHHHHHHHhcCCCccceEee-ecCCCccCCCCCCCCCCCCCCC--HHHHHHHHH-HHHhcCCeeeEeecCC
Q 021264 85 TDLAPKDVPEALDNTLQDLQIDYVDLYLI-HWPARMKKGSVGFNPENLLPLD--IPSTWRAME-ALYDSGKARAIGVCNF 160 (315)
Q Consensus 85 ~~~~~~~i~~~ve~sL~~Lg~d~iDl~~l-H~p~~~~~~~~~~~~~~~~~~~--~~~~~~~L~-~lk~~GkIr~iGvS~~ 160 (315)
+..+.+.+.+.++..+ .|+.|+|.+|.| |.|........... +.++.. ..+.++... .|.+.|- +.+|+|||
T Consensus 199 P~QT~~~~~~~l~~a~-~l~pdhis~y~L~~~p~t~~~~~~~~~--~~lP~~d~~~~~~~~~~e~L~~~Gy-~~yeisnf 274 (416)
T COG0635 199 PGQTLESLKEDLEQAL-ELGPDHLSLYSLAIEPGTKFAQRKIKG--KALPDEDEKADMYELVEELLEKAGY-RQYEISNF 274 (416)
T ss_pred CCCCHHHHHHHHHHHH-hCCCCEEEEeeeecCCCchhhhhcccC--CCCcChHHHHHHHHHHHHHHHHCCC-cEEeechh
Confidence 4555556666666655 467999999977 55544321111100 011111 124454444 4556666 89999999
Q ss_pred Ch
Q 021264 161 ST 162 (315)
Q Consensus 161 ~~ 162 (315)
..
T Consensus 275 a~ 276 (416)
T COG0635 275 AK 276 (416)
T ss_pred cC
Confidence 86
No 86
>PRK09490 metH B12-dependent methionine synthase; Provisional
Probab=46.01 E-value=4.6e+02 Score=29.09 Aligned_cols=90 Identities=11% Similarity=0.011 Sum_probs=58.1
Q ss_pred hcCCCccceEeeecCCCccCCCCCCCCCCCCCCCHHHHHHHHHHHHhc----CCeeeEeecCCChhhHHHHHHhcCCCCc
Q 021264 102 DLQIDYVDLYLIHWPARMKKGSVGFNPENLLPLDIPSTWRAMEALYDS----GKARAIGVCNFSTKKLGDLLEIARVPPA 177 (315)
Q Consensus 102 ~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~L~~lk~~----GkIr~iGvS~~~~~~l~~~~~~~~~~~~ 177 (315)
+-|.+.||+= ++... .+.++.++.+..+.+. -++ -|-+-+.++..++..++.....+.
T Consensus 395 e~GA~iIDVn----~g~~~-------------id~~eem~rvv~~i~~~~~~~~v-PlsIDS~~~~ViEaaLk~~~G~~I 456 (1229)
T PRK09490 395 ENGAQIIDIN----MDEGM-------------LDSEAAMVRFLNLIASEPDIARV-PIMIDSSKWEVIEAGLKCIQGKGI 456 (1229)
T ss_pred HCCCCEEEEC----CCCCC-------------CCHHHHHHHHHHHHHhhhccCCc-eEEEeCCcHHHHHHHHhhcCCCCE
Confidence 5677889984 32211 3444444443333332 122 388888999999999998766666
Q ss_pred ccccccCccc-chHHHHHHHHHcCceEEEecCC
Q 021264 178 VNQVECHSSW-QQQKLHAFCKSKGVHLSGYSPL 209 (315)
Q Consensus 178 ~~q~~~n~~~-~~~~~~~~~~~~gi~v~~~~pl 209 (315)
+|-++.--.+ +-.++++.|+++|..++++.--
T Consensus 457 INSIs~~~~~~~~~~~~~l~~kyga~vV~m~~d 489 (1229)
T PRK09490 457 VNSISLKEGEEKFIEHARLVRRYGAAVVVMAFD 489 (1229)
T ss_pred EEeCCCCCCCccHHHHHHHHHHhCCCEEEEecC
Confidence 6666553322 2257999999999999998543
No 87
>PRK12331 oxaloacetate decarboxylase; Provisional
Probab=45.97 E-value=1.7e+02 Score=28.35 Aligned_cols=101 Identities=8% Similarity=0.106 Sum_probs=48.6
Q ss_pred HHHHHHHHHhcCCCccceEeeecCCCccCCCCCCCCCCCCCCCHHHHHHHHHHHHhc-CCee---------eEeecCCCh
Q 021264 93 PEALDNTLQDLQIDYVDLYLIHWPARMKKGSVGFNPENLLPLDIPSTWRAMEALYDS-GKAR---------AIGVCNFST 162 (315)
Q Consensus 93 ~~~ve~sL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~L~~lk~~-GkIr---------~iGvS~~~~ 162 (315)
+..+-+.|.++|++.|.+. + ....+.+.. ...++-|+.++.+++. ..++ .+|.+++..
T Consensus 28 kl~ia~~Ld~~Gv~~IE~~--g--gatf~~~~~--------f~~e~p~e~l~~l~~~~~~~~l~~l~r~~N~~G~~~~pd 95 (448)
T PRK12331 28 MLPILEKLDNAGYHSLEMW--G--GATFDACLR--------FLNEDPWERLRKIRKAVKKTKLQMLLRGQNLLGYRNYAD 95 (448)
T ss_pred HHHHHHHHHHcCCCEEEec--C--Cccchhhhc--------cCCCCHHHHHHHHHHhCCCCEEEEEeccccccccccCch
Confidence 4556677888898888883 1 100000000 0112246666666554 2233 245555554
Q ss_pred hhHHHHHHh---cCCCCcccccccCcccchHHHHHHHHHcCceEEE
Q 021264 163 KKLGDLLEI---ARVPPAVNQVECHSSWQQQKLHAFCKSKGVHLSG 205 (315)
Q Consensus 163 ~~l~~~~~~---~~~~~~~~q~~~n~~~~~~~~~~~~~~~gi~v~~ 205 (315)
+.+++.++. .+++..-+-...|....-.+.+++++++|..+.+
T Consensus 96 dvv~~~v~~A~~~Gvd~irif~~lnd~~n~~~~v~~ak~~G~~v~~ 141 (448)
T PRK12331 96 DVVESFVQKSVENGIDIIRIFDALNDVRNLETAVKATKKAGGHAQV 141 (448)
T ss_pred hhHHHHHHHHHHCCCCEEEEEEecCcHHHHHHHHHHHHHcCCeEEE
Confidence 444433322 2232222222333333235678888888876543
No 88
>PRK00087 4-hydroxy-3-methylbut-2-enyl diphosphate reductase/S1 RNA-binding domain protein; Reviewed
Probab=45.57 E-value=1.2e+02 Score=30.87 Aligned_cols=115 Identities=12% Similarity=0.026 Sum_probs=71.9
Q ss_pred HHHHHHhcCCeeeEeecCCChhhHHHHHHhcCCCCcccccccCccc----chHHHHHHHHHcCceEEEecCCCCCCCCCC
Q 021264 142 AMEALYDSGKARAIGVCNFSTKKLGDLLEIARVPPAVNQVECHSSW----QQQKLHAFCKSKGVHLSGYSPLGSPGTRWI 217 (315)
Q Consensus 142 ~L~~lk~~GkIr~iGvS~~~~~~l~~~~~~~~~~~~~~q~~~n~~~----~~~~~~~~~~~~gi~v~~~~pl~~gg~~~~ 217 (315)
.++.+....++..+-=++.+.+...++.+...-.+.-+.+.=.++. |+..+.++|++.++-++.-+.-.+
T Consensus 146 ~~~~~~~~~~~~~~~QTT~~~~~~~~~~~~l~~~~~~~~~~~tiC~at~~Rq~a~~~la~~~d~~~vvGg~~Ss------ 219 (647)
T PRK00087 146 EAEKLPFDKKICVVSQTTEKQENFEKVLKELKKKGKEVKVFNTICNATEVRQEAAEKLAKKVDVMIVVGGKNSS------ 219 (647)
T ss_pred HHhhCCCCCCEEEEEcCCCcHHHHHHHHHHHHHhCCCcccCCCcchhhhhHHHHHHHHHhhCCEEEEECCCCCc------
Confidence 3444444566666666677777666665543211111122112222 336788889888877777444432
Q ss_pred ccccCCchHHHHHHHHhCC------CHHHHHHHHHhhcC-CeeecCCCCHHHHHHhh
Q 021264 218 KSDVLRHPVLKTAAEKLGK------TPAQVALRWGLQMG-HSVLPKSTNEARIKENF 267 (315)
Q Consensus 218 ~~~~~~~~~l~~la~~~~~------s~aq~al~~~l~~~-~~~i~G~~~~~~l~~nl 267 (315)
....|.++|++.+. ++.++.-.|..... +.+..|+|+|+.+-+.+
T Consensus 220 -----Nt~~L~~i~~~~~~~~~~ie~~~el~~~~~~~~~~vgitagaStP~~~i~~v 271 (647)
T PRK00087 220 -----NTTKLYEICKSNCTNTIHIENAGELPEEWFKGVKIIGVTAGASTPDWIIEEV 271 (647)
T ss_pred -----cHHHHHHHHHHHCCCEEEECChHHCCHHHhCCCCEEEEEeccCCCHHHHHHH
Confidence 23578899998873 67888889988666 67889999999664443
No 89
>cd01974 Nitrogenase_MoFe_beta Nitrogenase_MoFe_beta: Nitrogenase MoFe protein, beta subunit. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. The Molybdenum (Mo-) nitrogenase is the most widespread and best characterized of these systems. Mo-nitrogenase consists of the MoFe protein (component 1) and the Fe protein (component 2). MoFe is an alpha2beta2 tetramer. This group contains the beta subunit of the MoFe protein. Each alphabeta pair of MoFe contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha subunit. The Fe protein contains a single [4Fe-4S] cluster. Electrons are transferred from the [4Fe-4S] cluster of the Fe protein to the P-cluster of the MoFe and in turn to FeMoCo, the site of substrate reduction.
Probab=45.39 E-value=2.8e+02 Score=26.52 Aligned_cols=114 Identities=13% Similarity=0.143 Sum_probs=59.9
Q ss_pred CCCCCHHHHHHHHHHhhhcCCcCCCCeEEeeccCCCCCCCCcHHHHHHHHHHhcCCC-ccceEeeecCCCccCCCCCCCC
Q 021264 50 RLYLNEKEIGFVLKKLFEDGVVKREDLWITSKLWCTDLAPKDVPEALDNTLQDLQID-YVDLYLIHWPARMKKGSVGFNP 128 (315)
Q Consensus 50 ~~Ygse~~lG~~l~~~~~~~~~~R~~~~i~tK~~~~~~~~~~i~~~ve~sL~~Lg~d-~iDl~~lH~p~~~~~~~~~~~~ 128 (315)
-.||.++.|-++|++..++. +++-++|.|-. ....--+.+..-+++.-++.... .+.++.++.|.......
T Consensus 65 ~V~Gg~~~L~~ai~~~~~~~--~p~~I~v~ttC-~~~iiGdDi~~v~~~~~~~~~~~~~~~vi~v~tpgf~gs~~----- 136 (435)
T cd01974 65 AVFGGQNNLIDGLKNAYAVY--KPDMIAVSTTC-MAEVIGDDLNAFIKNAKNKGSIPADFPVPFANTPSFVGSHI----- 136 (435)
T ss_pred eEECcHHHHHHHHHHHHHhc--CCCEEEEeCCc-hHhhhhccHHHHHHHHHHhccCCCCCeEEEecCCCCccCHH-----
Confidence 34788888889988875543 34445555554 33333444555554443333211 47889998886642110
Q ss_pred CCCCCCCHHHHHHHHHH-HH-------hcCCeeeEe-ecCC-C-hhhHHHHHHhcCCCC
Q 021264 129 ENLLPLDIPSTWRAMEA-LY-------DSGKARAIG-VCNF-S-TKKLGDLLEIARVPP 176 (315)
Q Consensus 129 ~~~~~~~~~~~~~~L~~-lk-------~~GkIr~iG-vS~~-~-~~~l~~~~~~~~~~~ 176 (315)
.....++++|-+ +. +.++|--|| +.+. + .+.+.++++..++.+
T Consensus 137 -----~G~~~a~~al~~~l~~~~~~~~~~~~VNli~~~~~~~d~~~el~~lL~~~Gl~~ 190 (435)
T cd01974 137 -----TGYDNMVKGILTHLTEGSGGAGKNGKLNIIPGFDTYAGNMREIKRLLELMGVDY 190 (435)
T ss_pred -----HHHHHHHHHHHHHHhcccCCCCCCCeEEEECCCCCCcchHHHHHHHHHHcCCCE
Confidence 122333444432 21 234466665 2222 2 467777777766544
No 90
>cd03325 D-galactonate_dehydratase D-galactonate dehydratase catalyses the dehydration of galactonate to 2-keto-3-deoxygalactnate (KDGal), as part of the D-galactonate nonphosphorolytic catabolic Entner-Doudoroff pathway. D-galactonate dehydratase belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=45.32 E-value=85 Score=29.10 Aligned_cols=66 Identities=20% Similarity=0.164 Sum_probs=47.1
Q ss_pred HHHHHHHHhcCCee-eEeecCCChhhHHHHHHhcCCCCcccccccCccc---chHHHHHHHHHcCceEEEec
Q 021264 140 WRAMEALYDSGKAR-AIGVCNFSTKKLGDLLEIARVPPAVNQVECHSSW---QQQKLHAFCKSKGVHLSGYS 207 (315)
Q Consensus 140 ~~~L~~lk~~GkIr-~iGvS~~~~~~l~~~~~~~~~~~~~~q~~~n~~~---~~~~~~~~~~~~gi~v~~~~ 207 (315)
++.+.+|++..-+. +.|=|.++..++..+++... .+++|......- ...++.+.|+++|+.++.+.
T Consensus 216 ~~~~~~L~~~~~~pia~dEs~~~~~~~~~~~~~~~--~d~v~~d~~~~GGit~~~~~~~lA~~~gi~~~~h~ 285 (352)
T cd03325 216 VEALAEIAARTTIPIATGERLFSRWDFKELLEDGA--VDIIQPDISHAGGITELKKIAAMAEAYDVALAPHC 285 (352)
T ss_pred HHHHHHHHHhCCCCEEecccccCHHHHHHHHHhCC--CCEEecCccccCCHHHHHHHHHHHHHcCCcEeccC
Confidence 67788888776554 55666678888888776533 477777765432 23688999999999998765
No 91
>PRK08645 bifunctional homocysteine S-methyltransferase/5,10-methylenetetrahydrofolate reductase protein; Reviewed
Probab=45.27 E-value=3.4e+02 Score=27.41 Aligned_cols=211 Identities=16% Similarity=0.150 Sum_probs=118.0
Q ss_pred CcchHHHHHHHHHHhCCcEEecCCCCCCH-------------HHHHHHHHHhhhcCCcCCCCeEEeeccCCCC-------
Q 021264 27 DPGIVGNAVDVAIKAGYRHIDCARLYLNE-------------KEIGFVLKKLFEDGVVKREDLWITSKLWCTD------- 86 (315)
Q Consensus 27 ~~~~~~~~l~~A~~~Gi~~~DtA~~Ygse-------------~~lG~~l~~~~~~~~~~R~~~~i~tK~~~~~------- 86 (315)
.++.+.++=+..+++|-+.+.|...+.+- ++...+++-.-+. .. .+++|+.-+++..
T Consensus 41 ~Pe~i~~vH~~yl~AGAdvi~TnTy~as~~~l~~~g~~~~~~~l~~~av~lAr~a--~~-~~~~VagsiGP~g~~~~~~~ 117 (612)
T PRK08645 41 HPELILRIHREYIEAGADVIQTNTFGANRIKLKRYGLEDKVKEINRAAVRLAREA--AG-DDVYVAGTIGPIGGRGPLGD 117 (612)
T ss_pred CHHHHHHHHHHHHHhCCCEEecCcccccHHHHHhcCchHHHHHHHHHHHHHHHHH--hc-CCCeEEEeCCCCCCCCCCCC
Confidence 44556666667789999999988665432 2222222211000 11 3578888887532
Q ss_pred CCCCcHHHHHHHHHHhcCCCccceEeeecCCCccCCCCCCCCCCCCCCCHHHHHHHHHHHHhcC-CeeeEeecCCCh---
Q 021264 87 LAPKDVPEALDNTLQDLQIDYVDLYLIHWPARMKKGSVGFNPENLLPLDIPSTWRAMEALYDSG-KARAIGVCNFST--- 162 (315)
Q Consensus 87 ~~~~~i~~~ve~sL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~L~~lk~~G-kIr~iGvS~~~~--- 162 (315)
.+.+.+++......+.|.-.-+|++++-.. .+..|+..+++.+++.+ +=-.+.++..+.
T Consensus 118 ~~~~~~~~~~~~~~~~l~~~gvD~l~~ET~-----------------~~~~Ea~a~~~a~~~~~~~p~~~Sf~~~~~g~l 180 (612)
T PRK08645 118 ISLEEIRREFREQIDALLEEGVDGLLLETF-----------------YDLEELLLALEAAREKTDLPIIAQVAFHEDGVT 180 (612)
T ss_pred CCHHHHHHHHHHHHHHHHhcCCCEEEEEcc-----------------CCHHHHHHHHHHHHHhCCCcEEEEEEECCCCee
Confidence 244667777777777775566999998754 33566667777777665 322455543221
Q ss_pred ---hhHHHHHHhc-CCCCcccccccCc-ccchHHHHHHHHH-cCceEEEecCCCCCCCCCCccccCCchHHHHHHHHhCC
Q 021264 163 ---KKLGDLLEIA-RVPPAVNQVECHS-SWQQQKLHAFCKS-KGVHLSGYSPLGSPGTRWIKSDVLRHPVLKTAAEKLGK 236 (315)
Q Consensus 163 ---~~l~~~~~~~-~~~~~~~q~~~n~-~~~~~~~~~~~~~-~gi~v~~~~pl~~gg~~~~~~~~~~~~~l~~la~~~~~ 236 (315)
..++++++.. ..+++.+-+++.. ...-..+++.... .++.+++| |-+ |.... ...... +..
T Consensus 181 ~~G~~~~~~~~~~~~~~~~avGiNC~~~p~~~~~~l~~l~~~~~~pl~vy-pNa--G~~~~----~~~~~~------~~~ 247 (612)
T PRK08645 181 QNGTSLEEALKELVAAGADVVGLNCGLGPYHMLEALERIPIPENAPLSAY-PNA--GLPEY----VDGRYV------YSA 247 (612)
T ss_pred CCCCCHHHHHHHHHhCCCCEEEecCCCCHHHHHHHHHHHHhccCceEEEE-ECC--CCCCC----CCCccc------cCC
Confidence 2233333332 2346777777763 3322445544444 35666666 332 22110 000000 112
Q ss_pred C---HHHHHHHHHhhcCCeeecCC--CCHHHHHHhhcccC
Q 021264 237 T---PAQVALRWGLQMGHSVLPKS--TNEARIKENFDIFD 271 (315)
Q Consensus 237 s---~aq~al~~~l~~~~~~i~G~--~~~~~l~~nl~a~~ 271 (315)
+ .++.+..|... |..+|=|| ++++|+++..+.++
T Consensus 248 ~p~~~~~~~~~~~~~-Ga~iiGGCCgt~P~hI~~la~~l~ 286 (612)
T PRK08645 248 NPEYFAEYALEFVEQ-GVRLIGGCCGTTPEHIRAMARALK 286 (612)
T ss_pred CHHHHHHHHHHHHHh-CCCEEeEecCCCHHHHHHHHHHhc
Confidence 2 46677778664 77776555 88888888887666
No 92
>cd07948 DRE_TIM_HCS Saccharomyces cerevisiae homocitrate synthase and related proteins, catalytic TIM barrel domain. Homocitrate synthase (HCS) catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate, the first step in the lysine biosynthesis pathway. This family includes the Yarrowia lipolytica LYS1 protein as well as the Saccharomyces cerevisiae LYS20 and LYS21 proteins. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. Th
Probab=45.10 E-value=2.2e+02 Score=25.24 Aligned_cols=122 Identities=11% Similarity=0.013 Sum_probs=63.9
Q ss_pred EcCCCCccCccccccCcCCcchHHHHHHHHHHhCCcEEecCC-CCCCHHHHHHHHHHhhhcCCcCCCCeEEeeccCCCCC
Q 021264 9 ELNTGAKMPSVGLGTWQADPGIVGNAVDVAIKAGYRHIDCAR-LYLNEKEIGFVLKKLFEDGVVKREDLWITSKLWCTDL 87 (315)
Q Consensus 9 ~l~tg~~vs~lglG~~~~~~~~~~~~l~~A~~~Gi~~~DtA~-~Ygse~~lG~~l~~~~~~~~~~R~~~~i~tK~~~~~~ 87 (315)
+|+.|...+.+.| +.++..++++...+.||..++... .++ +. .-.+.+...+.+ ....++... ..
T Consensus 7 TLRDG~Q~~~~~~-----s~~~k~~i~~~L~~~Gv~~IEvG~P~~~-~~-~~~~~~~l~~~~--~~~~v~~~~-----r~ 72 (262)
T cd07948 7 TLREGEQFANAFF-----DTEDKIEIAKALDAFGVDYIELTSPAAS-PQ-SRADCEAIAKLG--LKAKILTHI-----RC 72 (262)
T ss_pred CCCCcCcCCCCCC-----CHHHHHHHHHHHHHcCCCEEEEECCCCC-HH-HHHHHHHHHhCC--CCCcEEEEe-----cC
Confidence 3456666665544 448899999999999999999863 332 22 222333321111 123332221 11
Q ss_pred CCCcHHHHHHHHHHhcCCCccceEeeecCCCccCCCCCCCCCCCCCCCHHH----HHHHHHHHHhcCCeeeEeec
Q 021264 88 APKDVPEALDNTLQDLQIDYVDLYLIHWPARMKKGSVGFNPENLLPLDIPS----TWRAMEALYDSGKARAIGVC 158 (315)
Q Consensus 88 ~~~~i~~~ve~sL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~----~~~~L~~lk~~GkIr~iGvS 158 (315)
. .+.++.+++ .|++.|.++.==++..... ....+.++ +.+.++.+++.|.--.+++.
T Consensus 73 ~----~~di~~a~~-~g~~~i~i~~~~S~~~~~~---------~~~~~~~e~~~~~~~~i~~a~~~G~~v~~~~e 133 (262)
T cd07948 73 H----MDDARIAVE-TGVDGVDLVFGTSPFLREA---------SHGKSITEIIESAVEVIEFVKSKGIEVRFSSE 133 (262)
T ss_pred C----HHHHHHHHH-cCcCEEEEEEecCHHHHHH---------HhCCCHHHHHHHHHHHHHHHHHCCCeEEEEEE
Confidence 1 345666665 4877777664211100000 00033444 44555788888876566654
No 93
>CHL00076 chlB photochlorophyllide reductase subunit B
Probab=45.07 E-value=3.2e+02 Score=26.98 Aligned_cols=62 Identities=11% Similarity=0.090 Sum_probs=33.8
Q ss_pred CCCHHHHHHHHHHhhhcCCcCCCCeEEeeccCCCCCCCCcHHHHHHHHHHhcCCCccceEeeecCCCc
Q 021264 52 YLNEKEIGFVLKKLFEDGVVKREDLWITSKLWCTDLAPKDVPEALDNTLQDLQIDYVDLYLIHWPARM 119 (315)
Q Consensus 52 Ygse~~lG~~l~~~~~~~~~~R~~~~i~tK~~~~~~~~~~i~~~ve~sL~~Lg~d~iDl~~lH~p~~~ 119 (315)
+|.++.+-++|+...+.. +.++++..-.+....--+.+..-+++.-+++ -++++.+|.|...
T Consensus 67 ~Gg~~kL~~~I~~~~~~~---~P~~I~V~tTC~~eiIGDDi~~v~~~~~~~~---~~pVi~v~t~~f~ 128 (513)
T CHL00076 67 RGSQEKVVDNITRKDKEE---RPDLIVLTPTCTSSILQEDLQNFVDRASIES---DSDVILADVNHYR 128 (513)
T ss_pred cchHHHHHHHHHHHHHhc---CCCEEEECCCCchhhhhcCHHHHHHHhhccc---CCCEEEeCCCCCc
Confidence 466666667776654332 3455544444443433344444444432233 3789999998664
No 94
>COG0159 TrpA Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=44.77 E-value=2.3e+02 Score=25.32 Aligned_cols=140 Identities=14% Similarity=0.064 Sum_probs=73.4
Q ss_pred CCHHHHHHHHHHHHhcCCeeeEeecCC-Ch---hhHHHHHHhc-CCCCcccccccCcccchHHHHHHHHHcCceEEEecC
Q 021264 134 LDIPSTWRAMEALYDSGKARAIGVCNF-ST---KKLGDLLEIA-RVPPAVNQVECHSSWQQQKLHAFCKSKGVHLSGYSP 208 (315)
Q Consensus 134 ~~~~~~~~~L~~lk~~GkIr~iGvS~~-~~---~~l~~~~~~~-~~~~~~~q~~~n~~~~~~~~~~~~~~~gi~v~~~~p 208 (315)
+..+++++.+++.++++.---|++-+| ++ ..++++++.+ ....+.+-++=-+.....++.+.|+++||..+..-+
T Consensus 76 ~t~~~~lel~~~~r~~~~~~Pivlm~Y~Npi~~~Gie~F~~~~~~~GvdGlivpDLP~ee~~~~~~~~~~~gi~~I~lva 155 (265)
T COG0159 76 VTLEDTLELVEEIRAKGVKVPIVLMTYYNPIFNYGIEKFLRRAKEAGVDGLLVPDLPPEESDELLKAAEKHGIDPIFLVA 155 (265)
T ss_pred CCHHHHHHHHHHHHhcCCCCCEEEEEeccHHHHhhHHHHHHHHHHcCCCEEEeCCCChHHHHHHHHHHHHcCCcEEEEeC
Confidence 445667777777776644333444433 22 1223322221 112233333333444446788888888888887655
Q ss_pred CCCCCCCCCccccCCchHHHHHHHHh----------CCC----H-HHH---HHHHHhhc---CCeeecCCCCHHHHHHhh
Q 021264 209 LGSPGTRWIKSDVLRHPVLKTAAEKL----------GKT----P-AQV---ALRWGLQM---GHSVLPKSTNEARIKENF 267 (315)
Q Consensus 209 l~~gg~~~~~~~~~~~~~l~~la~~~----------~~s----~-aq~---al~~~l~~---~~~~i~G~~~~~~l~~nl 267 (315)
... ..+.++.+++.- |+| + .+. .++.+.+. |..+=.|.|+++|+++..
T Consensus 156 Ptt-----------~~~rl~~i~~~a~GFiY~vs~~GvTG~~~~~~~~~~~~v~~vr~~~~~Pv~vGFGIs~~e~~~~v~ 224 (265)
T COG0159 156 PTT-----------PDERLKKIAEAASGFIYYVSRMGVTGARNPVSADVKELVKRVRKYTDVPVLVGFGISSPEQAAQVA 224 (265)
T ss_pred CCC-----------CHHHHHHHHHhCCCcEEEEecccccCCCcccchhHHHHHHHHHHhcCCCeEEecCcCCHHHHHHHH
Confidence 532 234566665542 332 1 222 22233322 234446889999999999
Q ss_pred cccCc-ccCHHHHHHHHh
Q 021264 268 DIFDW-SISEDLFVKFSE 284 (315)
Q Consensus 268 ~a~~~-~Lt~e~~~~l~~ 284 (315)
++.+- -.-.+-++.|++
T Consensus 225 ~~ADGVIVGSAiV~~i~~ 242 (265)
T COG0159 225 EAADGVIVGSAIVKIIEE 242 (265)
T ss_pred HhCCeEEEcHHHHHHHHh
Confidence 88652 444444444444
No 95
>PRK14459 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=44.62 E-value=1.4e+02 Score=28.11 Aligned_cols=99 Identities=10% Similarity=0.006 Sum_probs=63.1
Q ss_pred eEeeecCCCccCCCCCCCCCCCCCCCHHHHHHHHHHHH-hcCC---eeeEeecCC--ChhhHHHHHHhcC-C---CCccc
Q 021264 110 LYLIHWPARMKKGSVGFNPENLLPLDIPSTWRAMEALY-DSGK---ARAIGVCNF--STKKLGDLLEIAR-V---PPAVN 179 (315)
Q Consensus 110 l~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~L~~lk-~~Gk---Ir~iGvS~~--~~~~l~~~~~~~~-~---~~~~~ 179 (315)
.+-||.++......-..-+.. .+.+++++++.++. +.|+ |.++=+... +.++++++.+... . +..++
T Consensus 241 avSLha~d~e~R~~l~p~n~~---~~l~~ll~a~~~~~~~~grrv~ieyvLi~GvNDs~e~a~~L~~llk~~~~~~~~VN 317 (373)
T PRK14459 241 AVSLHAPDDELRDELVPVNTR---WKVDEVLDAARYYADATGRRVSIEYALIRDINDQPWRADLLGKKLHGRGGGWVHVN 317 (373)
T ss_pred EEEeCCCCHHHHHHhcCcccC---CCHHHHHHHHHHHHHHhCCEEEEEEEEeCCCCCCHHHHHHHHHHHhhccCCCeEEE
Confidence 367898887543221110011 46789999988876 4465 556666644 4556666665543 2 45778
Q ss_pred ccccCcccch----------HHHHHHHHHcCceEEEecCCCC
Q 021264 180 QVECHSSWQQ----------QKLHAFCKSKGVHLSGYSPLGS 211 (315)
Q Consensus 180 q~~~n~~~~~----------~~~~~~~~~~gi~v~~~~pl~~ 211 (315)
-++||+.... ....+..+++|+.+......+.
T Consensus 318 LIpyNp~~~~~y~~~~~~~~~~F~~~L~~~gi~~tiR~~~G~ 359 (373)
T PRK14459 318 LIPLNPTPGSKWTASPPEVEREFVRRLRAAGVPCTVRDTRGQ 359 (373)
T ss_pred EEccCCCCCCCCcCCCHHHHHHHHHHHHHCCCeEEeeCCCCc
Confidence 8888885421 3577788899999999877743
No 96
>cd03318 MLE Muconate Lactonizing Enzyme (MLE), an homooctameric enzyme, catalyses the conversion of cis,cis-muconate (CCM) to muconolactone (ML) in the catechol branch of the beta-ketoadipate pathway. This pathway is used in soil microbes to breakdown lignin-derived aromatics, catechol and protocatechuate, to citric acid cycle intermediates. Some bacterial species are also capable of dehalogenating chloroaromatic compounds by the action of chloromuconate lactonizing enzymes (Cl-MLEs). MLEs are members of the enolase superfamily characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and that is stabilized by coordination to the essential Mg2+ ion.
Probab=44.61 E-value=85 Score=29.21 Aligned_cols=66 Identities=15% Similarity=0.128 Sum_probs=36.4
Q ss_pred HHHHHHHHhcCCee-eEeecCCChhhHHHHHHhcCCCCcccccccCccc---chHHHHHHHHHcCceEEEec
Q 021264 140 WRAMEALYDSGKAR-AIGVCNFSTKKLGDLLEIARVPPAVNQVECHSSW---QQQKLHAFCKSKGVHLSGYS 207 (315)
Q Consensus 140 ~~~L~~lk~~GkIr-~iGvS~~~~~~l~~~~~~~~~~~~~~q~~~n~~~---~~~~~~~~~~~~gi~v~~~~ 207 (315)
++.+.+|+++..|. +.|=|-++...+..+++... ++++|+.....- ...++...|+.+|+.++..+
T Consensus 228 ~~~~~~l~~~~~~pia~dE~~~~~~~~~~~i~~~~--~d~~~~d~~~~GGit~~~~~~~~a~~~gi~~~~~~ 297 (365)
T cd03318 228 LDGLARLRSRNRVPIMADESVSGPADAFELARRGA--ADVFSLKIAKSGGLRRAQKVAAIAEAAGIALYGGT 297 (365)
T ss_pred HHHHHHHHhhcCCCEEcCcccCCHHHHHHHHHhCC--CCeEEEeecccCCHHHHHHHHHHHHHcCCceeecC
Confidence 55566666654444 44555556666666655433 245555543321 22466777777777766543
No 97
>PRK10550 tRNA-dihydrouridine synthase C; Provisional
Probab=44.60 E-value=2.5e+02 Score=25.66 Aligned_cols=138 Identities=13% Similarity=0.080 Sum_probs=79.5
Q ss_pred CcCCcchHHHHHHHHHHhCCcEEec---CC-----CCC--C-----HHHHHHHHHHhhhcCCcCCCCeEEeeccCCCCCC
Q 021264 24 WQADPGIVGNAVDVAIKAGYRHIDC---AR-----LYL--N-----EKEIGFVLKKLFEDGVVKREDLWITSKLWCTDLA 88 (315)
Q Consensus 24 ~~~~~~~~~~~l~~A~~~Gi~~~Dt---A~-----~Yg--s-----e~~lG~~l~~~~~~~~~~R~~~~i~tK~~~~~~~ 88 (315)
++.++++..+....+.+.|+..+|. .| .|| + -+.+.+.++...+ . + .+++-|+.|+.....+
T Consensus 70 ~g~~p~~~~~aA~~~~~~g~d~IdiN~GCP~~~v~~~g~Gs~Ll~~~~~~~eiv~avr~-~-~-~~~~pVsvKiR~g~~~ 146 (312)
T PRK10550 70 LGQYPQWLAENAARAVELGSWGVDLNCGCPSKTVNGSGGGATLLKDPELIYQGAKAMRE-A-V-PAHLPVTVKVRLGWDS 146 (312)
T ss_pred ccCCHHHHHHHHHHHHHcCCCEEEEeCCCCchHHhcCCCchHhhcCHHHHHHHHHHHHH-h-c-CCCcceEEEEECCCCC
Confidence 3456677777777888899999993 12 233 1 3444455544311 0 1 1246688886432111
Q ss_pred CCcHHHHHHHHHHhcCCCccceEeeecCCCccCCCCCCCCCCCCCCCHHH-HHHHHHHHHhcCCeeeEeecCC-ChhhHH
Q 021264 89 PKDVPEALDNTLQDLQIDYVDLYLIHWPARMKKGSVGFNPENLLPLDIPS-TWRAMEALYDSGKARAIGVCNF-STKKLG 166 (315)
Q Consensus 89 ~~~i~~~ve~sL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~-~~~~L~~lk~~GkIr~iGvS~~-~~~~l~ 166 (315)
.+. ...+-+.|+..| +|.+.+|.-.... . ..... -|+...++|+.-.|--||.... +++++.
T Consensus 147 ~~~-~~~~a~~l~~~G---vd~i~Vh~Rt~~~-~-----------y~g~~~~~~~i~~ik~~~~iPVi~nGdI~t~~da~ 210 (312)
T PRK10550 147 GER-KFEIADAVQQAG---ATELVVHGRTKED-G-----------YRAEHINWQAIGEIRQRLTIPVIANGEIWDWQSAQ 210 (312)
T ss_pred chH-HHHHHHHHHhcC---CCEEEECCCCCcc-C-----------CCCCcccHHHHHHHHhhcCCcEEEeCCcCCHHHHH
Confidence 222 345556677776 6778889543311 0 11111 3678888888777888887775 677888
Q ss_pred HHHHhcCCCCcccccc
Q 021264 167 DLLEIARVPPAVNQVE 182 (315)
Q Consensus 167 ~~~~~~~~~~~~~q~~ 182 (315)
++++..+. +.+++-
T Consensus 211 ~~l~~~g~--DgVmiG 224 (312)
T PRK10550 211 QCMAITGC--DAVMIG 224 (312)
T ss_pred HHHhccCC--CEEEEc
Confidence 87765443 555554
No 98
>PRK10945 gene expression modulator; Provisional
Probab=44.56 E-value=17 Score=25.26 Aligned_cols=50 Identities=12% Similarity=0.209 Sum_probs=38.3
Q ss_pred CCCCHHHHHHhhcccCcccCHHHHHHHHhchhhhh---cccccccccCCCCcc
Q 021264 256 KSTNEARIKENFDIFDWSISEDLFVKFSEIEQARL---IRGTAYVHDTFGSYR 305 (315)
Q Consensus 256 G~~~~~~l~~nl~a~~~~Lt~e~~~~l~~~~~~~~---~~g~~~~~~~~~~~~ 305 (315)
.+++.+-|+..++-....|+..|+..+.++.+.+. ..|.-|-+-|++-|+
T Consensus 17 rcss~eTLEkvie~~~~~L~~~E~~~f~~AaDHR~AEL~~~KLyDkVP~~vW~ 69 (72)
T PRK10945 17 RCQTIDTLERVIEKNKYELSDDELAVFYSAADHRLAELTMNKLYDKIPSSVWK 69 (72)
T ss_pred hcCcHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHhchhHhhcCHHHhh
Confidence 46788999999998888999999998888777332 446666666877665
No 99
>COG3623 SgaU Putative L-xylulose-5-phosphate 3-epimerase [Carbohydrate transport and metabolism]
Probab=44.55 E-value=35 Score=29.85 Aligned_cols=70 Identities=21% Similarity=0.312 Sum_probs=43.7
Q ss_pred CCCCccCccccccCc---------CCcchHHHH----HHHHHHhCCcEEecCCC---CC--CHHHHHHHHHH---hhhcC
Q 021264 11 NTGAKMPSVGLGTWQ---------ADPGIVGNA----VDVAIKAGYRHIDCARL---YL--NEKEIGFVLKK---LFEDG 69 (315)
Q Consensus 11 ~tg~~vs~lglG~~~---------~~~~~~~~~----l~~A~~~Gi~~~DtA~~---Yg--se~~lG~~l~~---~~~~~ 69 (315)
.||..+|.+||...+ ...+++.++ +..|.+.||+.+-.|.. |- +++...+++.. .++-.
T Consensus 65 etgv~ipSmClSaHRRfPfGS~D~~~r~~aleiM~KaI~LA~dLGIRtIQLAGYDVYYE~~d~eT~~rFi~g~~~a~~lA 144 (287)
T COG3623 65 ETGVRIPSMCLSAHRRFPFGSKDEATRQQALEIMEKAIQLAQDLGIRTIQLAGYDVYYEEADEETRQRFIEGLKWAVELA 144 (287)
T ss_pred HhCCCccchhhhhhccCCCCCCCHHHHHHHHHHHHHHHHHHHHhCceeEeeccceeeeccCCHHHHHHHHHHHHHHHHHH
Confidence 789999999998854 112344444 55556889999999853 32 45555554433 22111
Q ss_pred CcCCCCeEEeecc
Q 021264 70 VVKREDLWITSKL 82 (315)
Q Consensus 70 ~~~R~~~~i~tK~ 82 (315)
.+..|.++.-+
T Consensus 145 --~~aqV~lAvEi 155 (287)
T COG3623 145 --ARAQVMLAVEI 155 (287)
T ss_pred --HhhccEEEeee
Confidence 46677777666
No 100
>PF03102 NeuB: NeuB family; InterPro: IPR013132 NeuB is the prokaryotic N-acetylneuraminic acid synthase (Neu5Ac). It catalyses the direct formation of Neu5Ac (the most common sialic acid) by condensation of phosphoenolpyruvate (PEP) and N-acetylmannosamine (ManNAc). This reaction has only been observed in prokaryotes; eukaryotes synthesise the 9-phosphate form, Neu5Ac-9-P, and utilise ManNAc-6-P instead of ManNAc. Such eukaryotic enzymes are not present in this family []. This family also contains SpsE spore coat polysaccharide biosynthesis proteins.; GO: 0016051 carbohydrate biosynthetic process; PDB: 3G8R_B 1XUU_A 1XUZ_A 3CM4_A 2ZDR_A 1VLI_A 2WQP_A.
Probab=44.16 E-value=55 Score=28.80 Aligned_cols=98 Identities=14% Similarity=0.268 Sum_probs=52.8
Q ss_pred HHHHHHHHHcCceEEEecCCCCCCCCCCccccCCchHHHHHHHHhCCC---------HHHHHHHHHhhcC--CeeecCCC
Q 021264 190 QKLHAFCKSKGVHLSGYSPLGSPGTRWIKSDVLRHPVLKTAAEKLGKT---------PAQVALRWGLQMG--HSVLPKST 258 (315)
Q Consensus 190 ~~~~~~~~~~gi~v~~~~pl~~gg~~~~~~~~~~~~~l~~la~~~~~s---------~aq~al~~~l~~~--~~~i~G~~ 258 (315)
.++.++|+++||.+++ +|+... .+. +..++++. .---.|+.+.+.+ +.+-.|++
T Consensus 59 ~~L~~~~~~~gi~f~s-tpfd~~-------------s~d-~l~~~~~~~~KIaS~dl~n~~lL~~~A~tgkPvIlSTG~s 123 (241)
T PF03102_consen 59 KELFEYCKELGIDFFS-TPFDEE-------------SVD-FLEELGVPAYKIASGDLTNLPLLEYIAKTGKPVILSTGMS 123 (241)
T ss_dssp HHHHHHHHHTT-EEEE-EE-SHH-------------HHH-HHHHHT-SEEEE-GGGTT-HHHHHHHHTT-S-EEEE-TT-
T ss_pred HHHHHHHHHcCCEEEE-CCCCHH-------------HHH-HHHHcCCCEEEeccccccCHHHHHHHHHhCCcEEEECCCC
Confidence 6799999999999988 577431 111 22333321 1112455565555 34447999
Q ss_pred CHHHHHHhhccc---------------CcccCHHH--HHHHHhchhhhhcccccccccCCCC
Q 021264 259 NEARIKENFDIF---------------DWSISEDL--FVKFSEIEQARLIRGTAYVHDTFGS 303 (315)
Q Consensus 259 ~~~~l~~nl~a~---------------~~~Lt~e~--~~~l~~~~~~~~~~g~~~~~~~~~~ 303 (315)
+.+++++.++.+ ..|-+.++ +..|..+.+.+.+.- +|-+|..|-
T Consensus 124 tl~EI~~Av~~~~~~~~~~l~llHC~s~YP~~~e~~NL~~i~~L~~~f~~~v-G~SDHt~g~ 184 (241)
T PF03102_consen 124 TLEEIERAVEVLREAGNEDLVLLHCVSSYPTPPEDVNLRVIPTLKERFGVPV-GYSDHTDGI 184 (241)
T ss_dssp -HHHHHHHHHHHHHHCT--EEEEEE-SSSS--GGG--TTHHHHHHHHSTSEE-EEEE-SSSS
T ss_pred CHHHHHHHHHHHHhcCCCCEEEEecCCCCCCChHHcChHHHHHHHHhcCCCE-EeCCCCCCc
Confidence 999999999877 33333443 445666666444443 588886664
No 101
>PF05913 DUF871: Bacterial protein of unknown function (DUF871); InterPro: IPR008589 This family consists of several conserved hypothetical proteins from bacteria and archaea. The function of this family is unknown though a number are annotated as outer surface proteins.; PDB: 2P0O_A 1X7F_A.
Probab=44.14 E-value=1.1e+02 Score=28.61 Aligned_cols=197 Identities=15% Similarity=0.190 Sum_probs=86.3
Q ss_pred CcchHHHHHHHHHHhCCcEEecCCCCC---CHHH---HHHHHHHhhhcCCcCCCCeEEeeccCCC-----CCCCCcHHHH
Q 021264 27 DPGIVGNAVDVAIKAGYRHIDCARLYL---NEKE---IGFVLKKLFEDGVVKREDLWITSKLWCT-----DLAPKDVPEA 95 (315)
Q Consensus 27 ~~~~~~~~l~~A~~~Gi~~~DtA~~Yg---se~~---lG~~l~~~~~~~~~~R~~~~i~tK~~~~-----~~~~~~i~~~ 95 (315)
+.++..+.|+.|.+.|++.+-|+=+.. .+.. +.+.++.. ....+.|..=+.+. ..+++.+
T Consensus 12 ~~~~~~~yi~~a~~~Gf~~iFTSL~ipe~~~~~~~~~~~~l~~~a------~~~~~~v~~Disp~~l~~lg~~~~dl--- 82 (357)
T PF05913_consen 12 SFEENKAYIEKAAKYGFKRIFTSLHIPEDDPEDYLERLKELLKLA------KELGMEVIADISPKVLKKLGISYDDL--- 82 (357)
T ss_dssp -HHHHHHHHHHHHCTTEEEEEEEE---------HHHHHHHHHHHH------HHCT-EEEEEE-CCHHHTTT-BTTBT---
T ss_pred CHHHHHHHHHHHHHCCCCEEECCCCcCCCCHHHHHHHHHHHHHHH------HHCCCEEEEECCHHHHHHcCCCHHHH---
Confidence 356788999999999999999986653 1222 22222222 33445565555331 1111111
Q ss_pred HHHHHHhcCCCccceEeeecCCCccCCCCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeeEeecCCChhhHHHHHHhcCCC
Q 021264 96 LDNTLQDLQIDYVDLYLIHWPARMKKGSVGFNPENLLPLDIPSTWRAMEALYDSGKARAIGVCNFSTKKLGDLLEIARVP 175 (315)
Q Consensus 96 ve~sL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~L~~lk~~GkIr~iGvS~~~~~~l~~~~~~~~~~ 175 (315)
..++.||++ .+=| |. + .+ .+...+|-++|.--.+=.|+.+.+.+..+.+... .
T Consensus 83 --~~~~~lGi~---~lRl---D~---G-----------f~----~~~ia~ls~ng~~I~LNASti~~~~l~~L~~~~~-~ 135 (357)
T PF05913_consen 83 --SFFKELGID---GLRL---DY---G-----------FS----GEEIAKLSKNGIKIELNASTITEEELDELIKYGA-N 135 (357)
T ss_dssp --HHHHHHT-S---EEEE---SS---S------------S----CHHHHHHTTT-SEEEEETTT--CCHHHHHCCTT---
T ss_pred --HHHHHcCCC---EEEE---CC---C-----------CC----HHHHHHHHhCCCEEEEECCCCChHHHHHHHHhcC-C
Confidence 134445532 2211 11 1 12 2345555555665566677777788877766432 1
Q ss_pred CcccccccCcccch----------HHHHHHHHHcCceEEEecCCCCCCCCCCccccCC-chHHHHHHHHhCCCHHHHHHH
Q 021264 176 PAVNQVECHSSWQQ----------QKLHAFCKSKGVHLSGYSPLGSPGTRWIKSDVLR-HPVLKTAAEKLGKTPAQVALR 244 (315)
Q Consensus 176 ~~~~q~~~n~~~~~----------~~~~~~~~~~gi~v~~~~pl~~gg~~~~~~~~~~-~~~l~~la~~~~~s~aq~al~ 244 (315)
+.-+. -+..+.++ .+.-++.++.|+.+.|+-|-.. ..+. ++.. -+++.. .-+++ ..+|.+
T Consensus 136 ~~~i~-a~HNfYPr~~TGLs~~~f~~~n~~~k~~gi~~~AFI~g~~-~~rG---Pl~~GLPTlE~---hR~~~-p~~aa~ 206 (357)
T PF05913_consen 136 FSNII-ACHNFYPRPYTGLSEEFFIEKNQLLKEYGIKTAAFIPGDE-NKRG---PLYEGLPTLEK---HRNLP-PYAAAL 206 (357)
T ss_dssp GGGEE-EE---B-STT-SB-HHHHHHHHHHHHHTT-EEEEEE--SS-S-BT---TT-S--BSBGG---GTTS--HHHHHH
T ss_pred HHHeE-EEecccCCCCCCCCHHHHHHHHHHHHHCCCcEEEEecCCC-cccC---CccCCCCccHH---HcCCC-HHHHHH
Confidence 11111 11122222 3455678889999999866642 2111 1111 011111 12344 444666
Q ss_pred HHhhcC--CeeecCCC--CHHHHHHhhc
Q 021264 245 WGLQMG--HSVLPKST--NEARIKENFD 268 (315)
Q Consensus 245 ~~l~~~--~~~i~G~~--~~~~l~~nl~ 268 (315)
.+...+ .-|++|=. +.++++.-..
T Consensus 207 ~L~~~~~iD~V~IGD~~~s~~el~~~~~ 234 (357)
T PF05913_consen 207 ELFALGLIDDVIIGDPFASEEELKQLAQ 234 (357)
T ss_dssp HHHHTTT--EEEE-SC---HHHHHHHHH
T ss_pred HHHhcCCCCEEEECCCcCCHHHHHHHHH
Confidence 776666 57787753 4444444433
No 102
>COG1149 MinD superfamily P-loop ATPase containing an inserted ferredoxin domain [Energy production and conversion]
Probab=44.04 E-value=33 Score=30.69 Aligned_cols=90 Identities=19% Similarity=0.290 Sum_probs=59.6
Q ss_pred HHHhcCCCccceEeeecCCCccCCCCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeeEeecC------CChhhHHHHHHhc
Q 021264 99 TLQDLQIDYVDLYLIHWPARMKKGSVGFNPENLLPLDIPSTWRAMEALYDSGKARAIGVCN------FSTKKLGDLLEIA 172 (315)
Q Consensus 99 sL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~L~~lk~~GkIr~iGvS~------~~~~~l~~~~~~~ 172 (315)
++++..-+..|++.+..|.-.. -..+..++..-. +|=|+. |+...+.++.+..
T Consensus 155 ~~kk~a~E~~~~~IIDsaaG~g-------------------CpVi~sl~~aD~--ai~VTEPTp~glhD~kr~~el~~~f 213 (284)
T COG1149 155 ALKKHAKELADLLIIDSAAGTG-------------------CPVIASLKGADL--AILVTEPTPFGLHDLKRALELVEHF 213 (284)
T ss_pred HHHHhhhhhcceeEEecCCCCC-------------------ChHHHhhccCCE--EEEEecCCccchhHHHHHHHHHHHh
Confidence 4444444447888887664321 112334444444 344433 3445666777778
Q ss_pred CCCCcccccccCcccchHHHHHHHHHcCceEEEecCCCC
Q 021264 173 RVPPAVNQVECHSSWQQQKLHAFCKSKGVHLSGYSPLGS 211 (315)
Q Consensus 173 ~~~~~~~q~~~n~~~~~~~~~~~~~~~gi~v~~~~pl~~ 211 (315)
+++..++-+.+|+.+. ++.++|++.|+++++--|+..
T Consensus 214 ~ip~~iViNr~~~g~s--~ie~~~~e~gi~il~~IPyd~ 250 (284)
T COG1149 214 GIPTGIVINRYNLGDS--EIEEYCEEEGIPILGEIPYDK 250 (284)
T ss_pred CCceEEEEecCCCCch--HHHHHHHHcCCCeeEECCcch
Confidence 8899999999966554 899999999999999999954
No 103
>PF07725 LRR_3: Leucine Rich Repeat; InterPro: IPR011713 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This entry includes some LRRs that fail to be detected by the IPR001611 from INTERPRO model.
Probab=43.98 E-value=9.3 Score=19.70 Aligned_cols=12 Identities=42% Similarity=1.118 Sum_probs=9.6
Q ss_pred CccccccccCCC
Q 021264 303 SYRSVEELWDGE 314 (315)
Q Consensus 303 ~~~~~~~~~~~~ 314 (315)
||..++.||+|.
T Consensus 8 ~~S~lekLW~G~ 19 (20)
T PF07725_consen 8 PYSKLEKLWEGV 19 (20)
T ss_pred CCCChHHhcCcc
Confidence 677889999874
No 104
>PRK06740 histidinol-phosphatase; Validated
Probab=43.58 E-value=2.7e+02 Score=25.71 Aligned_cols=126 Identities=12% Similarity=0.052 Sum_probs=61.7
Q ss_pred HHHHHHHHHhcCCCccceEeeecCCCccCCCCCCCCCCCCCCC----HHHHHHHHHHHHhcCCeeeEeecCCChhhHHHH
Q 021264 93 PEALDNTLQDLQIDYVDLYLIHWPARMKKGSVGFNPENLLPLD----IPSTWRAMEALYDSGKARAIGVCNFSTKKLGDL 168 (315)
Q Consensus 93 ~~~ve~sL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~----~~~~~~~L~~lk~~GkIr~iGvS~~~~~~l~~~ 168 (315)
...+++.|+....||+ +.-+|..+...-..... ...+...+ ....++.+.++.+.|++..|| |- +.+...
T Consensus 155 ~~~~~~~l~~~~~Dyv-IgSVH~i~g~~~~~~~~-~~~~~~~~~~~~~~~Yf~~~~~~i~~~~fdvIg---Hp-Dlik~f 228 (331)
T PRK06740 155 EQELQSLLALGDFDYV-IGSVHFLNGWGFDNPDT-KEYFEEHDLYALYDTFFKTVECAIRSELFDIIA---HL-DNIKVF 228 (331)
T ss_pred HHHHHHHHhcCCCCEE-EEeeeEeCCcCCCCccH-HHHhcCCCHHHHHHHHHHHHHHHHHcCCCCEee---Cc-cHHHhc
Confidence 4567777777777777 77889764211000000 00000011 234667888888899988777 22 222111
Q ss_pred HHhcCCCCcccccccCcc-cchHHHHHHHHHcCceEEEecCCCCCCCCCCccccCCchHHHHHHHHhCC
Q 021264 169 LEIARVPPAVNQVECHSS-WQQQKLHAFCKSKGVHLSGYSPLGSPGTRWIKSDVLRHPVLKTAAEKLGK 236 (315)
Q Consensus 169 ~~~~~~~~~~~q~~~n~~-~~~~~~~~~~~~~gi~v~~~~pl~~gg~~~~~~~~~~~~~l~~la~~~~~ 236 (315)
..++.. ... ..-.++++.|+++|+.+-..+.. |+..+.......+.+-+.+.++|+
T Consensus 229 ----~~~~~~-----~~~~~~~~~I~~a~~~~g~~lEINt~~---~~r~~~~e~yP~~~il~~~~e~Gv 285 (331)
T PRK06740 229 ----NYRLDE-----NEQLSYYKEIARALVETNTATEINAGL---YYRYPVREMCPSPLFLQVLAKHEV 285 (331)
T ss_pred ----CCCcch-----hhhHHHHHHHHHHHHHcCCEEEEECcc---ccCCCCCCCCcCHHHHHHHHHCCC
Confidence 111100 000 11146677777888777665521 222111233344456566666664
No 105
>TIGR02534 mucon_cyclo muconate and chloromuconate cycloisomerases. This model encompasses muconate cycloisomerase (EC 5.5.1.1) and chloromuconate cycloisomerase (EC 5.5.1.7), enzymes that often overlap in specificity. It excludes more distantly related proteins such as mandelate racemase (5.1.2.2).
Probab=43.47 E-value=62 Score=30.22 Aligned_cols=68 Identities=15% Similarity=0.106 Sum_probs=38.6
Q ss_pred HHHHHHHHhcCCee-eEeecCCChhhHHHHHHhcCCCCcccccccCccc---chHHHHHHHHHcCceEEEecCC
Q 021264 140 WRAMEALYDSGKAR-AIGVCNFSTKKLGDLLEIARVPPAVNQVECHSSW---QQQKLHAFCKSKGVHLSGYSPL 209 (315)
Q Consensus 140 ~~~L~~lk~~GkIr-~iGvS~~~~~~l~~~~~~~~~~~~~~q~~~n~~~---~~~~~~~~~~~~gi~v~~~~pl 209 (315)
++.+.+|++...+. +.|=|-++..++.++++... .+++|+.....- ....+...|+.+|+.++..+.+
T Consensus 227 ~~~~~~l~~~~~~pia~dE~~~~~~~~~~~~~~~~--~d~~~~d~~~~GGi~~~~~i~~lA~~~gi~~~~~~~~ 298 (368)
T TIGR02534 227 REALARLTRRFNVPIMADESVTGPADALAIAKASA--ADVFALKTTKSGGLLESKKIAAIAEAAGIALYGGTML 298 (368)
T ss_pred HHHHHHHHHhCCCCEEeCcccCCHHHHHHHHHhCC--CCEEEEcccccCCHHHHHHHHHHHHHcCCceeeecch
Confidence 55555666655444 55555666666666665433 355665554432 2246677777777777665433
No 106
>TIGR01290 nifB nitrogenase cofactor biosynthesis protein NifB. This model describes NifB, a protein required for the biosynthesis of the iron-molybdenum (or iron-vanadium) cofactor used by the nitrogen-fixing enzyme nitrogenase. Archaeal homologs lack the most C-terminal region and score between the trusted and noise cutoffs of this model.
Probab=43.28 E-value=2.5e+02 Score=27.08 Aligned_cols=106 Identities=10% Similarity=0.099 Sum_probs=60.9
Q ss_pred CCCCcHHHHHHHHHHhcCCCccceEeeecCCCccCCCCCCCCCCCCCCCHHHHHHHHHHHHhcC-CeeeEeecCCC---h
Q 021264 87 LAPKDVPEALDNTLQDLQIDYVDLYLIHWPARMKKGSVGFNPENLLPLDIPSTWRAMEALYDSG-KARAIGVCNFS---T 162 (315)
Q Consensus 87 ~~~~~i~~~ve~sL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~L~~lk~~G-kIr~iGvS~~~---~ 162 (315)
.+++.+.+.+++....++ .++.+-|-.|.+.. ...+.+++.|..++++. -+ ++.+++.. +
T Consensus 60 Ltpee~~~~i~~v~~~~~--~~~~V~iaG~GEPL-------------l~~e~~~~~l~~~~~~~~~i-~i~lsTNG~~l~ 123 (442)
T TIGR01290 60 LTPEQALRKARQVAAEIP--QLSVVGIAGPGDPL-------------ANIGKTFQTLELVARQLPDV-KLCLSTNGLMLP 123 (442)
T ss_pred CCHHHHHHHHHHHHHhcC--CCCEEEEecCCCcc-------------cCccccHHHHHHHHHhcCCC-eEEEECCCCCCH
Confidence 445556666666555442 34555555544321 33456788888888872 23 57887765 4
Q ss_pred hhHHHHHHhcCCCCcccccccCcccch-----------------------------HHHHHHHHHcCceEEEecCCCC
Q 021264 163 KKLGDLLEIARVPPAVNQVECHSSWQQ-----------------------------QKLHAFCKSKGVHLSGYSPLGS 211 (315)
Q Consensus 163 ~~l~~~~~~~~~~~~~~q~~~n~~~~~-----------------------------~~~~~~~~~~gi~v~~~~pl~~ 211 (315)
+.++++++.. .+.+.+.++..++. -+-++.+.+.|+.+....++-.
T Consensus 124 e~i~~L~~~g---vd~V~islka~d~e~~~~Iy~~v~~~g~~~tG~~~~~il~e~~l~~l~~l~~~G~~v~v~~vlIp 198 (442)
T TIGR01290 124 EHVDRLVDLG---VGHVTITINAIDPAVGEKIYPWVWYEGERYTGREAADLLIERQLEGLEKLTERGILVKVNSVLIP 198 (442)
T ss_pred HHHHHHHHCC---CCeEEEeccCCCHHHHhhcchhhccccccccCcchHHHHHHHHHHHHHHHHhCCCeEEEEEEeeC
Confidence 6666665532 24445554443321 1234567778888888777755
No 107
>TIGR01502 B_methylAsp_ase methylaspartate ammonia-lyase. This model describes methylaspartate ammonia-lyase, also called beta-methylaspartase (EC 4.3.1.2). It follows methylaspartate mutase (composed of S and E subunits) in one of several possible pathways of glutamate fermentation.
Probab=42.82 E-value=1.7e+02 Score=27.90 Aligned_cols=73 Identities=10% Similarity=0.051 Sum_probs=51.9
Q ss_pred HHHHHHHHHHHhc------CCeeeEeecCCChhhHHHHHHhcCCCCcccccccCccc---chHHHHHHHHHcCceEEEec
Q 021264 137 PSTWRAMEALYDS------GKARAIGVCNFSTKKLGDLLEIARVPPAVNQVECHSSW---QQQKLHAFCKSKGVHLSGYS 207 (315)
Q Consensus 137 ~~~~~~L~~lk~~------GkIr~iGvS~~~~~~l~~~~~~~~~~~~~~q~~~n~~~---~~~~~~~~~~~~gi~v~~~~ 207 (315)
++.++.+.+|++. ..=-..+=|.++.+.+.++++... .+++|+..+-+- ...++..+|+.+||.++..+
T Consensus 278 ~~~~e~la~Lr~~~~~~~~~vPI~aDEs~~t~~d~~~~i~~~a--~d~v~iK~~k~GGIt~a~kia~lA~~~Gi~~~~g~ 355 (408)
T TIGR01502 278 QAQIEAMADLRAELDGRGVDAEIVADEWCNTVEDVKFFTDAKA--GHMVQIKTPDVGGVNNIARAIMYCKANGMGAYVGG 355 (408)
T ss_pred hhhHHHHHHHHHHhhcCCCCceEEecCCCCCHHHHHHHHHhCC--CCEEEeCccccCCHHHHHHHHHHHHHcCCEEEEeC
Confidence 3457777778765 333355666678888888877644 478888776543 23688999999999999987
Q ss_pred CCCC
Q 021264 208 PLGS 211 (315)
Q Consensus 208 pl~~ 211 (315)
....
T Consensus 356 ~~~e 359 (408)
T TIGR01502 356 TCNE 359 (408)
T ss_pred CCCC
Confidence 6633
No 108
>cd03323 D-glucarate_dehydratase D-Glucarate dehydratase (GlucD) catalyzes the dehydration of both D-glucarate and L-idarate to form 5-keto-4-deoxy-D-glucarate (5-KDG) , the initial reaction of the catabolic pathway for (D)-glucarate. GlucD belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and that is stabilized by coordination to the essential Mg2+ ion.
Probab=42.41 E-value=1e+02 Score=29.25 Aligned_cols=68 Identities=12% Similarity=0.122 Sum_probs=49.8
Q ss_pred HHHHHHHHhcCCee-eEeecCCChhhHHHHHHhcCCCCcccccccCccc---chHHHHHHHHHcCceEEEecCC
Q 021264 140 WRAMEALYDSGKAR-AIGVCNFSTKKLGDLLEIARVPPAVNQVECHSSW---QQQKLHAFCKSKGVHLSGYSPL 209 (315)
Q Consensus 140 ~~~L~~lk~~GkIr-~iGvS~~~~~~l~~~~~~~~~~~~~~q~~~n~~~---~~~~~~~~~~~~gi~v~~~~pl 209 (315)
++.+.+|++...+. ..|-|.++..++.++++... .+++|......- ...++...|+.+|+.++.++..
T Consensus 250 ~~~~~~L~~~~~~PIa~dEs~~~~~~~~~~i~~~a--vdil~~d~~~~GGit~~~kia~~A~~~gi~~~~h~~~ 321 (395)
T cd03323 250 REGMAEFRRATGLPLATNMIVTDFRQLGHAIQLNA--VDIPLADHHFWGGMRGSVRVAQVCETWGLGWGMHSNN 321 (395)
T ss_pred HHHHHHHHHhcCCCEEcCCcccCHHHHHHHHHcCC--CcEEeeccccccCHHHHHHHHHHHHHcCCeEEEecCc
Confidence 67788888876665 56666677788888877543 477777765432 3368899999999999988764
No 109
>PRK09413 IS2 repressor TnpA; Reviewed
Probab=42.31 E-value=32 Score=26.57 Aligned_cols=40 Identities=13% Similarity=-0.054 Sum_probs=35.2
Q ss_pred CCcchHHHHHHHHHHhCCcEEecCCCCC-CHHHHHHHHHHh
Q 021264 26 ADPGIVGNAVDVAIKAGYRHIDCARLYL-NEKEIGFVLKKL 65 (315)
Q Consensus 26 ~~~~~~~~~l~~A~~~Gi~~~DtA~~Yg-se~~lG~~l~~~ 65 (315)
.+.+.-..++...++.|.++-++|..|| +...|..|.+.+
T Consensus 13 ys~EfK~~aV~~~~~~g~sv~evA~e~gIs~~tl~~W~r~y 53 (121)
T PRK09413 13 RTTQEKIAIVQQSFEPGMTVSLVARQHGVAASQLFLWRKQY 53 (121)
T ss_pred CCHHHHHHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHH
Confidence 4556666788889999999999999999 999999999986
No 110
>PF02679 ComA: (2R)-phospho-3-sulfolactate synthase (ComA); InterPro: IPR003830 Methanogenic archaea produce methane via the anaerobic reduction of acetate or single carbon compounds []. Coenzyme M (CoM; 2-mercaptoethanesulphonic acid) serves as the terminal methyl carrier for this process. Previously thought to be unique to methanogenic archaea, CoM has also been found in methylotrophic bacteria. Biosynthesis of CoM begins with the Michael addition of sulphite to phosphoenolpyruvate, forming 2-phospho-3-sulpholactate (PSL). This reaction is catalyzed by members of this family, PSL synthase (ComA) []. Subsequently, PSL is dephosphorylated by phosphosulpholactate phosphatase (ComB) to form 3-sulpholactate [], which is then converted to 3-sulphopyruvate by L-sulpholactate dehydrogenase (ComC; 1.1.1.272 from EC) []. Sulphopyruvate decarboxylase (ComDE; 4.1.1.79 from EC) converts 3-sulphopyruvate to sulphoacetaldehyde []. Reductive thiolation of sulphoacetaldehyde is the final step.; GO: 0019295 coenzyme M biosynthetic process; PDB: 1U83_A 1QWG_A.
Probab=42.29 E-value=1.6e+02 Score=25.96 Aligned_cols=78 Identities=21% Similarity=0.268 Sum_probs=53.0
Q ss_pred cchHHHHHHHHHHhCCcEEecCCCCC--CHHHHHHHHHHhhhcCCcCCCCeEEeeccCCCC------CCCCcHHHHHHHH
Q 021264 28 PGIVGNAVDVAIKAGYRHIDCARLYL--NEKEIGFVLKKLFEDGVVKREDLWITSKLWCTD------LAPKDVPEALDNT 99 (315)
Q Consensus 28 ~~~~~~~l~~A~~~Gi~~~DtA~~Yg--se~~lG~~l~~~~~~~~~~R~~~~i~tK~~~~~------~~~~~i~~~ve~s 99 (315)
+....+.++.|-+.|++.+..+..+- ++...-++++.. ....+.+.+-++.++ .+++.+.+.+++-
T Consensus 83 q~~~~~yl~~~k~lGf~~IEiSdGti~l~~~~r~~~I~~~------~~~Gf~v~~EvG~K~~~~~~~~~~~~~i~~~~~d 156 (244)
T PF02679_consen 83 QGKFDEYLEECKELGFDAIEISDGTIDLPEEERLRLIRKA------KEEGFKVLSEVGKKDPESDFSLDPEELIEQAKRD 156 (244)
T ss_dssp TT-HHHHHHHHHHCT-SEEEE--SSS---HHHHHHHHHHH------CCTTSEEEEEES-SSHHHHTT--CCHHHHHHHHH
T ss_pred cChHHHHHHHHHHcCCCEEEecCCceeCCHHHHHHHHHHH------HHCCCEEeecccCCCchhcccCCHHHHHHHHHHH
Confidence 45567789999999999999998876 566666778775 566689999888643 3477788888888
Q ss_pred HHhcCCCccceEeeec
Q 021264 100 LQDLQIDYVDLYLIHW 115 (315)
Q Consensus 100 L~~Lg~d~iDl~~lH~ 115 (315)
|+. | .|.+++..
T Consensus 157 LeA-G---A~~ViiEa 168 (244)
T PF02679_consen 157 LEA-G---ADKVIIEA 168 (244)
T ss_dssp HHH-T---ECEEEE--
T ss_pred HHC-C---CCEEEEee
Confidence 877 4 67777764
No 111
>COG0621 MiaB 2-methylthioadenine synthetase [Translation, ribosomal structure and biogenesis]
Probab=42.21 E-value=3.3e+02 Score=26.33 Aligned_cols=83 Identities=18% Similarity=0.093 Sum_probs=51.8
Q ss_pred CCCCCCHHHHHHHHHHHHhcCC---------eeeEeecCCC-hhhHHHHHHhcCCCCcccccccCcccch---HHHHHHH
Q 021264 130 NLLPLDIPSTWRAMEALYDSGK---------ARAIGVCNFS-TKKLGDLLEIARVPPAVNQVECHSSWQQ---QKLHAFC 196 (315)
Q Consensus 130 ~~~~~~~~~~~~~L~~lk~~Gk---------Ir~iGvS~~~-~~~l~~~~~~~~~~~~~~q~~~n~~~~~---~~~~~~~ 196 (315)
..-+.+.+++++..++|.++|. +.++|..... ...+.++++...--+...-+.+...++. +++++..
T Consensus 169 ~~rSr~~e~Il~ev~~Lv~~G~kEI~L~gqdv~aYG~D~~~~~~~l~~Ll~~l~~I~G~~riR~~~~~P~~~~d~lI~~~ 248 (437)
T COG0621 169 KERSRPPEDILKEVKRLVAQGVKEIVLTGQDVNAYGKDLGGGKPNLADLLRELSKIPGIERIRFGSSHPLEFTDDLIEAI 248 (437)
T ss_pred CccCCCHHHHHHHHHHHHHCCCeEEEEEEEehhhccccCCCCccCHHHHHHHHhcCCCceEEEEecCCchhcCHHHHHHH
Confidence 3445789999999999999997 3344444321 2334444443221122455555555554 7899998
Q ss_pred HHc-CceEEEecCCCCC
Q 021264 197 KSK-GVHLSGYSPLGSP 212 (315)
Q Consensus 197 ~~~-gi~v~~~~pl~~g 212 (315)
++. .+--.-+-|+..|
T Consensus 249 ~~~~kv~~~lHlPvQsG 265 (437)
T COG0621 249 AETPKVCPHLHLPVQSG 265 (437)
T ss_pred hcCCcccccccCccccC
Confidence 885 6666667788665
No 112
>TIGR01182 eda Entner-Doudoroff aldolase. 2-deydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) is an enzyme of the Entner-Doudoroff pathway. This aldolase has another function, 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) shown experimentally in Escherichia coli and Pseudomonas putida
Probab=42.20 E-value=1.8e+02 Score=24.79 Aligned_cols=83 Identities=13% Similarity=0.188 Sum_probs=52.1
Q ss_pred HHHHHHHHhcCCCccceEeeecCCCccCCCCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeeEeecCC-ChhhHHHHHHhc
Q 021264 94 EALDNTLQDLQIDYVDLYLIHWPARMKKGSVGFNPENLLPLDIPSTWRAMEALYDSGKARAIGVCNF-STKKLGDLLEIA 172 (315)
Q Consensus 94 ~~ve~sL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~L~~lk~~GkIr~iGvS~~-~~~~l~~~~~~~ 172 (315)
..+-+.|-+-|+..+.+=+ + ....++.+++++++..=-.||..+. +.++++++++..
T Consensus 23 ~~~~~al~~~Gi~~iEit~-~---------------------t~~a~~~i~~l~~~~~~~~vGAGTVl~~~~a~~a~~aG 80 (204)
T TIGR01182 23 LPLAKALIEGGLRVLEVTL-R---------------------TPVALDAIRLLRKEVPDALIGAGTVLNPEQLRQAVDAG 80 (204)
T ss_pred HHHHHHHHHcCCCEEEEeC-C---------------------CccHHHHHHHHHHHCCCCEEEEEeCCCHHHHHHHHHcC
Confidence 4555667777766554432 1 1235666666766533245888875 678888887743
Q ss_pred CCCCcccccccCcccchHHHHHHHHHcCceEEE
Q 021264 173 RVPPAVNQVECHSSWQQQKLHAFCKSKGVHLSG 205 (315)
Q Consensus 173 ~~~~~~~q~~~n~~~~~~~~~~~~~~~gi~v~~ 205 (315)
. .| -.++.. +.+++++|+++|+.+++
T Consensus 81 A-~F-----ivsP~~-~~~v~~~~~~~~i~~iP 106 (204)
T TIGR01182 81 A-QF-----IVSPGL-TPELAKHAQDHGIPIIP 106 (204)
T ss_pred C-CE-----EECCCC-CHHHHHHHHHcCCcEEC
Confidence 2 12 133322 47999999999998887
No 113
>TIGR01496 DHPS dihydropteroate synthase. This model represents dihydropteroate synthase, the enzyme that catalyzes the second to last step in folic acid biosynthesis. The gene is usually designated folP (folic acid biosynthsis) or sul (sulfanilamide resistance). This model represents one branch of the family of pterin-binding enzymes (pfam00809) and of a cluster of dihydropteroate synthase and related enzymes (COG0294). Other members of pfam00809 and COG0294 are represented by TIGR00284.
Probab=41.95 E-value=2.4e+02 Score=24.92 Aligned_cols=63 Identities=19% Similarity=0.172 Sum_probs=44.2
Q ss_pred HHHHHHHHHhc-CCeeeEeecCCChhhHHHHHHhcCCCCcccccccCcccchHHHHHHHHHcCceEEEecC
Q 021264 139 TWRAMEALYDS-GKARAIGVCNFSTKKLGDLLEIARVPPAVNQVECHSSWQQQKLHAFCKSKGVHLSGYSP 208 (315)
Q Consensus 139 ~~~~L~~lk~~-GkIr~iGvS~~~~~~l~~~~~~~~~~~~~~q~~~n~~~~~~~~~~~~~~~gi~v~~~~p 208 (315)
+...++.+++. +. -+.+-+++++.++++++.. . ..++-+.. .. ..++++.++++|..++.+.-
T Consensus 63 l~~~v~~~~~~~~~--plsiDT~~~~vi~~al~~G-~-~iINsis~--~~-~~~~~~l~~~~~~~vV~m~~ 126 (257)
T TIGR01496 63 VVPVIKALRDQPDV--PISVDTYRAEVARAALEAG-A-DIINDVSG--GQ-DPAMLEVAAEYGVPLVLMHM 126 (257)
T ss_pred HHHHHHHHHhcCCC--eEEEeCCCHHHHHHHHHcC-C-CEEEECCC--CC-CchhHHHHHHcCCcEEEEeC
Confidence 55666667665 43 3899999999999999873 2 22333322 22 46789999999999999643
No 114
>PRK10415 tRNA-dihydrouridine synthase B; Provisional
Probab=41.67 E-value=2.8e+02 Score=25.40 Aligned_cols=135 Identities=15% Similarity=0.187 Sum_probs=76.9
Q ss_pred CCcchHHHHHHHHHHhCCcEEec----------CCCCCC-----HHHHHHHHHHhhhcCCcCCCCeEEeeccCCC-CCCC
Q 021264 26 ADPGIVGNAVDVAIKAGYRHIDC----------ARLYLN-----EKEIGFVLKKLFEDGVVKREDLWITSKLWCT-DLAP 89 (315)
Q Consensus 26 ~~~~~~~~~l~~A~~~Gi~~~Dt----------A~~Ygs-----e~~lG~~l~~~~~~~~~~R~~~~i~tK~~~~-~~~~ 89 (315)
.++++..+..+.+.+.|+..+|. ...+|+ ...+.+.++...+ . + ++-|+.|+... +.+.
T Consensus 74 ~~~~~~~~aa~~~~~~g~d~IdlN~gCP~~~v~~~g~Gs~ll~~p~~~~eiv~av~~-a-~---d~pv~vKiR~G~~~~~ 148 (321)
T PRK10415 74 SDPKEMADAARINVESGAQIIDINMGCPAKKVNRKLAGSALLQYPDLVKSILTEVVN-A-V---DVPVTLKIRTGWAPEH 148 (321)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEeCCCCHHHHcCCCcccHHhcCHHHHHHHHHHHHH-h-c---CCceEEEEEccccCCc
Confidence 46677777777778899999993 233453 4445555544311 1 1 34466666321 1111
Q ss_pred CcHHHHHHHHHHhcCCCccceEeeecCCCccCCCCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeeEeecCC-ChhhHHHH
Q 021264 90 KDVPEALDNTLQDLQIDYVDLYLIHWPARMKKGSVGFNPENLLPLDIPSTWRAMEALYDSGKARAIGVCNF-STKKLGDL 168 (315)
Q Consensus 90 ~~i~~~ve~sL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~L~~lk~~GkIr~iGvS~~-~~~~l~~~ 168 (315)
.. ...+-+.++..| +|.+.+|.-..... ..-..-|+.+.++++.=.|-=||.... +++++.++
T Consensus 149 ~~-~~~~a~~le~~G---~d~i~vh~rt~~~~------------~~G~a~~~~i~~ik~~~~iPVI~nGgI~s~~da~~~ 212 (321)
T PRK10415 149 RN-CVEIAQLAEDCG---IQALTIHGRTRACL------------FNGEAEYDSIRAVKQKVSIPVIANGDITDPLKARAV 212 (321)
T ss_pred ch-HHHHHHHHHHhC---CCEEEEecCccccc------------cCCCcChHHHHHHHHhcCCcEEEeCCCCCHHHHHHH
Confidence 11 223444567777 57778896443210 011123778888888777887887775 67788888
Q ss_pred HHhcCCCCccccccc
Q 021264 169 LEIARVPPAVNQVEC 183 (315)
Q Consensus 169 ~~~~~~~~~~~q~~~ 183 (315)
++..+. +.+|+-=
T Consensus 213 l~~~ga--dgVmiGR 225 (321)
T PRK10415 213 LDYTGA--DALMIGR 225 (321)
T ss_pred HhccCC--CEEEECh
Confidence 775443 5666553
No 115
>cd00739 DHPS DHPS subgroup of Pterin binding enzymes. DHPS (dihydropteroate synthase), a functional homodimer, catalyzes the condensation of p-aminobenzoic acid (pABA) in the de novo biosynthesis of folate, which is an essential cofactor in both nucleic acid and protein biosynthesis. Prokaryotes (and some lower eukaryotes) must synthesize folate de novo, while higher eukaryotes are able to utilize dietary folate and therefore lack DHPS. Sulfonamide drugs, which are substrate analogs of pABA, target DHPS.
Probab=41.16 E-value=2.6e+02 Score=24.79 Aligned_cols=65 Identities=18% Similarity=0.143 Sum_probs=44.6
Q ss_pred HHHHHHHHHhcCCeeeEeecCCChhhHHHHHHhcCCCCcccccccCcccchHHHHHHHHHcCceEEEecC
Q 021264 139 TWRAMEALYDSGKARAIGVCNFSTKKLGDLLEIARVPPAVNQVECHSSWQQQKLHAFCKSKGVHLSGYSP 208 (315)
Q Consensus 139 ~~~~L~~lk~~GkIr~iGvS~~~~~~l~~~~~~~~~~~~~~q~~~n~~~~~~~~~~~~~~~gi~v~~~~p 208 (315)
+...++.+++.-.+. +.+-+++++.++++++.. ...+|-+ +....+.++++.++++|..++.+..
T Consensus 64 l~~~v~~i~~~~~~p-lSIDT~~~~v~e~al~~G--~~iINdi--sg~~~~~~~~~l~~~~~~~vV~m~~ 128 (257)
T cd00739 64 VIPVLEALRGELDVL-ISVDTFRAEVARAALEAG--ADIINDV--SGGSDDPAMLEVAAEYGAPLVLMHM 128 (257)
T ss_pred HHHHHHHHHhcCCCc-EEEeCCCHHHHHHHHHhC--CCEEEeC--CCCCCChHHHHHHHHcCCCEEEECC
Confidence 344566777663443 899999999999999874 2223322 3332226899999999999999644
No 116
>cd07948 DRE_TIM_HCS Saccharomyces cerevisiae homocitrate synthase and related proteins, catalytic TIM barrel domain. Homocitrate synthase (HCS) catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate, the first step in the lysine biosynthesis pathway. This family includes the Yarrowia lipolytica LYS1 protein as well as the Saccharomyces cerevisiae LYS20 and LYS21 proteins. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. Th
Probab=41.07 E-value=1.5e+02 Score=26.27 Aligned_cols=95 Identities=20% Similarity=0.216 Sum_probs=55.0
Q ss_pred HHHHHHHHHHhcCCCccceEeeecCCCccCCCCCCCCCCCCCCCHHHHHHHHHHHHhcCC-eeeEeecCCChhhHHHHHH
Q 021264 92 VPEALDNTLQDLQIDYVDLYLIHWPARMKKGSVGFNPENLLPLDIPSTWRAMEALYDSGK-ARAIGVCNFSTKKLGDLLE 170 (315)
Q Consensus 92 i~~~ve~sL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~L~~lk~~Gk-Ir~iGvS~~~~~~l~~~~~ 170 (315)
-+..+-+.|.++|++.|.+-. |.. ..+.+++.+.+.+.++ .+-.++...+.+.++.+.+
T Consensus 23 ~k~~i~~~L~~~Gv~~IEvG~---P~~-----------------~~~~~~~~~~l~~~~~~~~v~~~~r~~~~di~~a~~ 82 (262)
T cd07948 23 DKIEIAKALDAFGVDYIELTS---PAA-----------------SPQSRADCEAIAKLGLKAKILTHIRCHMDDARIAVE 82 (262)
T ss_pred HHHHHHHHHHHcCCCEEEEEC---CCC-----------------CHHHHHHHHHHHhCCCCCcEEEEecCCHHHHHHHHH
Confidence 456777779999998888873 432 1233445555544333 3335555667778888877
Q ss_pred hcCCCCcccccccCcccch--------------HHHHHHHHHcCceEEEec
Q 021264 171 IARVPPAVNQVECHSSWQQ--------------QKLHAFCKSKGVHLSGYS 207 (315)
Q Consensus 171 ~~~~~~~~~q~~~n~~~~~--------------~~~~~~~~~~gi~v~~~~ 207 (315)
. +.+...+-++.|..+.. .+.+++++++|+.|...-
T Consensus 83 ~-g~~~i~i~~~~S~~~~~~~~~~~~~e~~~~~~~~i~~a~~~G~~v~~~~ 132 (262)
T cd07948 83 T-GVDGVDLVFGTSPFLREASHGKSITEIIESAVEVIEFVKSKGIEVRFSS 132 (262)
T ss_pred c-CcCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEE
Confidence 4 33322222222221111 356788999998776653
No 117
>PF00682 HMGL-like: HMGL-like of this family is not conserved in other members. are a sub-families of this Pfam.; InterPro: IPR000891 Pyruvate carboxylase (6.4.1.1 from EC) (PC), a member of the biotin-dependent enzyme family, is involved in the gluconeogenesis by mediating the carboxylation of pyruvate to oxaloacetate. Biotin-dependent carboxylase enzymes perform a two step reaction. Enzyme-bound biotin is first carboxylated by bicarbonate and ATP and the carboxyl group temporarily bound to biotin is subsequently transferred to an acceptor substrate such as pyruvate []. PC has three functional domains: a biotin carboxylase (BC) domain, a carboxyltransferase (CT) domain which perform the second part of the reaction and a biotinyl domain [, ]. The mechanism by which the carboxyl group is transferred from the carboxybiotin to the pyruvate is not well understood. The pyruvate carboxyltransferase domain is also found in other pyruvate binding enzymes and acetyl-CoA dependent enzymes suggesting that this domain can be associated with different enzymatic activities. This domain is found towards the N-terminal region of various aldolase enzymes. This N-terminal TIM barrel domain [] interacts with the C-terminal domain. The C-terminal DmpG_comm domain (IPR012425 from INTERPRO) is thought to promote heterodimerisation with members of IPR003361 from INTERPRO to form a bifunctional aldolase-dehydrogenase []. ; GO: 0003824 catalytic activity; PDB: 3MP5_E 3MP3_E 2CW6_E 3MP4_D 3HBL_A 3HB9_C 3HO8_A 3BG5_C 1YDN_B 3RMJ_A ....
Probab=41.03 E-value=2.3e+02 Score=24.28 Aligned_cols=142 Identities=13% Similarity=0.101 Sum_probs=76.8
Q ss_pred cHHHHHHHHHHhcCCCccceEeeecCCCccCCCCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeeEeecCCChhhHHHHHH
Q 021264 91 DVPEALDNTLQDLQIDYVDLYLIHWPARMKKGSVGFNPENLLPLDIPSTWRAMEALYDSGKARAIGVCNFSTKKLGDLLE 170 (315)
Q Consensus 91 ~i~~~ve~sL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~L~~lk~~GkIr~iGvS~~~~~~l~~~~~ 170 (315)
..+..+-+.|.++|+++|++- .|... ....+.++.+.+.... .+..+++-.....++..++
T Consensus 14 ~~k~~i~~~L~~~Gv~~iEvg---~~~~~--------------~~~~~~v~~~~~~~~~--~~~~~~~~~~~~~i~~~~~ 74 (237)
T PF00682_consen 14 EEKLEIAKALDEAGVDYIEVG---FPFAS--------------EDDFEQVRRLREALPN--ARLQALCRANEEDIERAVE 74 (237)
T ss_dssp HHHHHHHHHHHHHTTSEEEEE---HCTSS--------------HHHHHHHHHHHHHHHS--SEEEEEEESCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCEEEEc---ccccC--------------HHHHHHhhhhhhhhcc--cccceeeeehHHHHHHHHH
Confidence 356677778999999999988 22211 1223445555555555 4445666666666766444
Q ss_pred ---hcCCCCcccccccCcccc--------------hHHHHHHHHHcCceEEEecCCCCCCCCCCccccCCchHHHHHHHH
Q 021264 171 ---IARVPPAVNQVECHSSWQ--------------QQKLHAFCKSKGVHLSGYSPLGSPGTRWIKSDVLRHPVLKTAAEK 233 (315)
Q Consensus 171 ---~~~~~~~~~q~~~n~~~~--------------~~~~~~~~~~~gi~v~~~~pl~~gg~~~~~~~~~~~~~l~~la~~ 233 (315)
..+.+...+-++.|..+. -.+.+.++++.|..+...-+- . .....+.+.++++.
T Consensus 75 ~~~~~g~~~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~v~~ak~~g~~v~~~~~~-~--------~~~~~~~~~~~~~~ 145 (237)
T PF00682_consen 75 AAKEAGIDIIRIFISVSDLHIRKNLNKSREEALERIEEAVKYAKELGYEVAFGCED-A--------SRTDPEELLELAEA 145 (237)
T ss_dssp HHHHTTSSEEEEEEETSHHHHHHHTCSHHHHHHHHHHHHHHHHHHTTSEEEEEETT-T--------GGSSHHHHHHHHHH
T ss_pred hhHhccCCEEEecCcccHHHHHHhhcCCHHHHHHHHHHHHHHHHhcCCceEeCccc-c--------ccccHHHHHHHHHH
Confidence 233333334444444211 156789999999999433222 2 12223334333332
Q ss_pred hCCCHHHHHHHHHhhcC-C-eee---cCCCCHHHHHHhhcccCc
Q 021264 234 LGKTPAQVALRWGLQMG-H-SVL---PKSTNEARIKENFDIFDW 272 (315)
Q Consensus 234 ~~~s~aq~al~~~l~~~-~-~~i---~G~~~~~~l~~nl~a~~~ 272 (315)
+...+ . ..| .|.-+|.++.+-++.+..
T Consensus 146 ------------~~~~g~~~i~l~Dt~G~~~P~~v~~lv~~~~~ 177 (237)
T PF00682_consen 146 ------------LAEAGADIIYLADTVGIMTPEDVAELVRALRE 177 (237)
T ss_dssp ------------HHHHT-SEEEEEETTS-S-HHHHHHHHHHHHH
T ss_pred ------------HHHcCCeEEEeeCccCCcCHHHHHHHHHHHHH
Confidence 11113 2 222 588999998888876653
No 118
>COG0042 tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis]
Probab=40.77 E-value=2.9e+02 Score=25.37 Aligned_cols=136 Identities=18% Similarity=0.167 Sum_probs=85.7
Q ss_pred CCcchHHHHHHHHHHhCCcEEec----------CCCCC-----CHHHHHHHHHHhhhcCCcCCCCeEEeeccCCCCCCCC
Q 021264 26 ADPGIVGNAVDVAIKAGYRHIDC----------ARLYL-----NEKEIGFVLKKLFEDGVVKREDLWITSKLWCTDLAPK 90 (315)
Q Consensus 26 ~~~~~~~~~l~~A~~~Gi~~~Dt----------A~~Yg-----se~~lG~~l~~~~~~~~~~R~~~~i~tK~~~~~~~~~ 90 (315)
.+++...+.-..+.+.|+..||. -..+| +...+.+.++...+.. + ++-|+.|+-......+
T Consensus 76 sdp~~l~eaA~~~~~~g~~~IdlN~GCP~~~V~~~g~Ga~Ll~~p~lv~~iv~a~~~av--~--~iPVTVKiRlG~d~~~ 151 (323)
T COG0042 76 SDPELLAEAAKIAEELGADIIDLNCGCPSPKVVKGGAGAALLKNPELLAEIVKAMVEAV--G--DIPVTVKIRLGWDDDD 151 (323)
T ss_pred CCHHHHHHHHHHHHhcCCCEEeeeCCCChHHhcCCCcchhhcCCHHHHHHHHHHHHHhh--C--CCCeEEEEecccCccc
Confidence 46677777888888999999993 33455 3667777776653222 2 4667777632211222
Q ss_pred cHHHHHHHHHHhcCCCccceEeeecCCCccCCCCCCCCCCCCCCCHHHHHHHHHHHHhcCC-eeeEeecC-CChhhHHHH
Q 021264 91 DVPEALDNTLQDLQIDYVDLYLIHWPARMKKGSVGFNPENLLPLDIPSTWRAMEALYDSGK-ARAIGVCN-FSTKKLGDL 168 (315)
Q Consensus 91 ~i~~~ve~sL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~L~~lk~~Gk-Ir~iGvS~-~~~~~l~~~ 168 (315)
.....+.+.++..| +|.+.+|.-.+.... ....-|+.+.++|+.=. |--||=.+ ++.+...+.
T Consensus 152 ~~~~~ia~~~~~~g---~~~ltVHgRtr~~~y------------~~~ad~~~I~~vk~~~~~ipvi~NGdI~s~~~a~~~ 216 (323)
T COG0042 152 ILALEIARILEDAG---ADALTVHGRTRAQGY------------LGPADWDYIKELKEAVPSIPVIANGDIKSLEDAKEM 216 (323)
T ss_pred ccHHHHHHHHHhcC---CCEEEEecccHHhcC------------CCccCHHHHHHHHHhCCCCeEEeCCCcCCHHHHHHH
Confidence 34566777777777 789999976654322 11245888888887766 66565444 577888888
Q ss_pred HHhcCCCCcccccc
Q 021264 169 LEIARVPPAVNQVE 182 (315)
Q Consensus 169 ~~~~~~~~~~~q~~ 182 (315)
++..+. +.+++-
T Consensus 217 l~~tg~--DgVMig 228 (323)
T COG0042 217 LEYTGA--DGVMIG 228 (323)
T ss_pred HHhhCC--CEEEEc
Confidence 887543 444443
No 119
>PRK07945 hypothetical protein; Provisional
Probab=40.59 E-value=3e+02 Score=25.42 Aligned_cols=106 Identities=12% Similarity=0.079 Sum_probs=55.4
Q ss_pred cchHHHHHHHHHHhCCcEEecCCCC-------C-CHHHHHHHHHHhh--hcCCcCCC-CeEEeeccCCCCCCCCcHHHHH
Q 021264 28 PGIVGNAVDVAIKAGYRHIDCARLY-------L-NEKEIGFVLKKLF--EDGVVKRE-DLWITSKLWCTDLAPKDVPEAL 96 (315)
Q Consensus 28 ~~~~~~~l~~A~~~Gi~~~DtA~~Y-------g-se~~lG~~l~~~~--~~~~~~R~-~~~i~tK~~~~~~~~~~i~~~v 96 (315)
.....++++.|.+.|+..+=.++|. + +...+-..++... ++. . ++ +|++-.-+.. -++.-....
T Consensus 110 ~~~~ee~v~~Ai~~Gl~~i~~TDH~p~~~~~~~~~~~~l~~y~~~i~~l~~k-y-~~I~Il~GiE~d~---~~~g~~~~~ 184 (335)
T PRK07945 110 GSPIEEMARTAAALGHEYCALTDHSPRLTVANGLSAERLRKQLDVVAELNEE-L-APFRILTGIEVDI---LDDGSLDQE 184 (335)
T ss_pred CCCHHHHHHHHHHCCCCEEEEeCCCCCccCCCCCCHHHHHHHHHHHHHHHHh-c-CCceEEEEeEecc---cCCCCcchh
Confidence 3558899999999999976555552 1 2222222222210 000 1 12 2222222222 122222333
Q ss_pred HHHHHhcCCCccceEeeecCCCccCCCCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeeEe
Q 021264 97 DNTLQDLQIDYVDLYLIHWPARMKKGSVGFNPENLLPLDIPSTWRAMEALYDSGKARAIG 156 (315)
Q Consensus 97 e~sL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~L~~lk~~GkIr~iG 156 (315)
++.|+. .||+ +.-+|+... .+..+..+.+.++.+.+++.-+|
T Consensus 185 ~~~l~~--~D~v-IgSvH~~~~---------------~~~~~~~~~l~~ai~~~~~dvlg 226 (335)
T PRK07945 185 PELLDR--LDVV-VASVHSKLR---------------MDAAAMTRRMLAAVANPHTDVLG 226 (335)
T ss_pred HHHHHh--CCEE-EEEeecCCC---------------CCHHHHHHHHHHHhcCCCCeEEe
Confidence 444554 4555 667897532 23456678888888888877777
No 120
>TIGR01928 menC_lowGC/arch o-succinylbenzoic acid (OSB) synthetase. This model describes the enzyme o-succinylbenzoic acid synthetase (menC) that is involved in one of the steps of the menaquinone biosynthesis pathway. It takes SHCHC and makes it into 2-succinylbenzoate. Included in this model are low GC gram positive bacteria and archaea. Also included in the seed and in the model are enzymes with the com-name of N-acylamino acid racemase (or the more general term, racemase / racemase family), which refers to the enzyme's industrial application as racemases, and not to its biological function as o-succinylbenzoic acid synthetase.
Probab=40.54 E-value=1e+02 Score=28.17 Aligned_cols=70 Identities=14% Similarity=0.114 Sum_probs=51.0
Q ss_pred HHHHHHHHHHhcCCee-eEeecCCChhhHHHHHHhcCCCCcccccccCccc---chHHHHHHHHHcCceEEEecCC
Q 021264 138 STWRAMEALYDSGKAR-AIGVCNFSTKKLGDLLEIARVPPAVNQVECHSSW---QQQKLHAFCKSKGVHLSGYSPL 209 (315)
Q Consensus 138 ~~~~~L~~lk~~GkIr-~iGvS~~~~~~l~~~~~~~~~~~~~~q~~~n~~~---~~~~~~~~~~~~gi~v~~~~pl 209 (315)
+-++.+.+|++...+. +.|=|.++...+..+++... .+++|.....+- ...++...|+.+|+.++..+.+
T Consensus 210 ~~~~~~~~l~~~~~~pia~dEs~~~~~~~~~~~~~~~--~dvi~~d~~~~GGit~~~~~~~~A~~~gi~~~~~~~~ 283 (324)
T TIGR01928 210 DDLSMLDELAKGTITPICLDESITSLDDARNLIELGN--VKVINIKPGRLGGLTEVQKAIETCREHGAKVWIGGML 283 (324)
T ss_pred hHHHHHHHHHhhcCCCEeeCCCcCCHHHHHHHHHcCC--CCEEEeCcchhcCHHHHHHHHHHHHHcCCeEEEcceE
Confidence 3467788888776555 66777788888888876543 477777765433 2368899999999999987655
No 121
>COG0820 Predicted Fe-S-cluster redox enzyme [General function prediction only]
Probab=40.43 E-value=1.3e+02 Score=27.96 Aligned_cols=96 Identities=17% Similarity=0.161 Sum_probs=63.5
Q ss_pred EeeecCCCccCCCCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeeEeec-------CCChhhHHHHHHhcC-CCCcccccc
Q 021264 111 YLIHWPARMKKGSVGFNPENLLPLDIPSTWRAMEALYDSGKARAIGVC-------NFSTKKLGDLLEIAR-VPPAVNQVE 182 (315)
Q Consensus 111 ~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~L~~lk~~GkIr~iGvS-------~~~~~~l~~~~~~~~-~~~~~~q~~ 182 (315)
+.||.|+...+..-..-+.. .+.++.+++.+....... +.|-+- |-+.++..++++... .+..++-++
T Consensus 216 iSLHa~nd~lR~~L~Pink~---~~~e~l~~a~r~Y~~~t~-~rVt~EY~Ll~~VND~~e~A~~L~~ll~~~~~~VNLIP 291 (349)
T COG0820 216 ISLHAPNDELRDQLMPINKK---YPIEELLEAIRYYPEKSG-RRVTFEYVLLDGVNDSLEHAKELAKLLKGIPCKVNLIP 291 (349)
T ss_pred EecCCCCHHHHhhhhccccC---CCHHHHHHHHHhhhhccC-ceEEEEeeecccccCCHHHHHHHHHHhcCCCceEEEee
Confidence 67899877543322111111 567888888888876655 444432 445788888888765 455899999
Q ss_pred cCcccch----------HHHHHHHHHcCceEEEecCCC
Q 021264 183 CHSSWQQ----------QKLHAFCKSKGVHLSGYSPLG 210 (315)
Q Consensus 183 ~n~~~~~----------~~~~~~~~~~gi~v~~~~pl~ 210 (315)
||+..-. ....+...++||.+.....-+
T Consensus 292 ~Np~~~~~y~r~~~~~i~~F~~~L~~~gv~~tvR~~~g 329 (349)
T COG0820 292 YNPVPGSDYERSSKERIRKFLKILKKAGVLVTVRKTRG 329 (349)
T ss_pred cCCCCCCCccCCcHHHHHHHHHHHHhCCeeEEeccccc
Confidence 9988643 345666777889888877664
No 122
>TIGR02660 nifV_homocitr homocitrate synthase NifV. This family consists of the NifV clade of homocitrate synthases, most of which are found in operons for nitrogen fixation. Members are closely homologous to enzymes that include 2-isopropylmalate synthase, (R)-citramalate synthase, and homocitrate synthases associated with other processes. The homocitrate made by this enzyme becomes a part of the iron-molybdenum cofactor of nitrogenase.
Probab=40.18 E-value=2.3e+02 Score=26.51 Aligned_cols=94 Identities=16% Similarity=0.204 Sum_probs=57.7
Q ss_pred HHHHHHHHHHhcCCCccceEeeecCCCccCCCCCCCCCCCCCCCHHHHHHHHHHHHhcC-CeeeEeecCCChhhHHHHHH
Q 021264 92 VPEALDNTLQDLQIDYVDLYLIHWPARMKKGSVGFNPENLLPLDIPSTWRAMEALYDSG-KARAIGVCNFSTKKLGDLLE 170 (315)
Q Consensus 92 i~~~ve~sL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~L~~lk~~G-kIr~iGvS~~~~~~l~~~~~ 170 (315)
-+..+-+.|.++|+++|.+- +|.. -+.-++.++.+.+.+ ..+..+++....+.++.+.+
T Consensus 24 ~k~~ia~~L~~~Gv~~IEvG---~p~~-----------------~~~~~e~i~~i~~~~~~~~i~~~~r~~~~di~~a~~ 83 (365)
T TIGR02660 24 EKLAIARALDEAGVDELEVG---IPAM-----------------GEEERAVIRAIVALGLPARLMAWCRARDADIEAAAR 83 (365)
T ss_pred HHHHHHHHHHHcCCCEEEEe---CCCC-----------------CHHHHHHHHHHHHcCCCcEEEEEcCCCHHHHHHHHc
Confidence 45677788999999999885 2321 123366777776664 36667777667778877766
Q ss_pred hcCCCCcccccccCcccch--------------HHHHHHHHHcCceEEEe
Q 021264 171 IARVPPAVNQVECHSSWQQ--------------QKLHAFCKSKGVHLSGY 206 (315)
Q Consensus 171 ~~~~~~~~~q~~~n~~~~~--------------~~~~~~~~~~gi~v~~~ 206 (315)
. +.+...+-+..|..+.. .+.+++++++|..+...
T Consensus 84 ~-g~~~i~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~i~~ak~~g~~v~~~ 132 (365)
T TIGR02660 84 C-GVDAVHISIPVSDLQIEAKLRKDRAWVLERLARLVSFARDRGLFVSVG 132 (365)
T ss_pred C-CcCEEEEEEccCHHHHHHHhCcCHHHHHHHHHHHHHHHHhCCCEEEEe
Confidence 3 33222222233322111 36788999999876543
No 123
>COG0773 MurC UDP-N-acetylmuramate-alanine ligase [Cell envelope biogenesis, outer membrane]
Probab=40.15 E-value=8.3 Score=37.07 Aligned_cols=95 Identities=16% Similarity=0.187 Sum_probs=62.8
Q ss_pred HHHHHHhcCCeeeEeecCCChhhHHHHHHhcCCCCcccccccCcccchHHHHHHHHHcCceEEEecCCCCCCCCCCcccc
Q 021264 142 AMEALYDSGKARAIGVCNFSTKKLGDLLEIARVPPAVNQVECHSSWQQQKLHAFCKSKGVHLSGYSPLGSPGTRWIKSDV 221 (315)
Q Consensus 142 ~L~~lk~~GkIr~iGvS~~~~~~l~~~~~~~~~~~~~~q~~~n~~~~~~~~~~~~~~~gi~v~~~~pl~~gg~~~~~~~~ 221 (315)
.-+.|.++|-.-++| |+++++ ....++++ -|.+..+.+-+.+++++||+++.+.-+.+ ++
T Consensus 44 ~t~~L~~~G~~i~~g---h~~~ni------~~~~~VV~---s~Ai~~~NpEi~~A~e~~ipi~~r~e~La--------el 103 (459)
T COG0773 44 MTQRLEALGIEIFIG---HDAENI------LDADVVVV---SNAIKEDNPEIVAALERGIPVISRAEMLA--------EL 103 (459)
T ss_pred HHHHHHHCCCeEeCC---CCHHHc------CCCceEEE---ecccCCCCHHHHHHHHcCCCeEcHHHHHH--------HH
Confidence 678888999988888 555532 11222222 23333456778999999999999866643 22
Q ss_pred CCchHHHHHHHHhCCCHHHHHHHHHhhcC---CeeecC
Q 021264 222 LRHPVLKTAAEKLGKTPAQVALRWGLQMG---HSVLPK 256 (315)
Q Consensus 222 ~~~~~l~~la~~~~~s~aq~al~~~l~~~---~~~i~G 256 (315)
+....--.++..||.|.+.-.++|++... .++++|
T Consensus 104 m~~~~~iaVaGTHGKTTTTsmla~vl~~~gldPtf~iG 141 (459)
T COG0773 104 MRFRTSIAVAGTHGKTTTTSMLAWVLEAAGLDPTFLIG 141 (459)
T ss_pred HhCCeeEEEeCCCCchhHHHHHHHHHHhCCCCCEEEEC
Confidence 32222333455689999999999999763 677777
No 124
>TIGR02026 BchE magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative cyclase. This model respresents the cobalamin-dependent oxidative cyclase responsible for forming the distinctive E-ring of the chlorin ring system under anaerobic conditions. This step is essential in the biosynthesis of both bacteriochlorophyll and chlorophyll under anaerobic conditions (a separate enzyme, AcsF, acts under aerobic conditions). This model identifies two clades of sequences, one from photosynthetic, non-cyanobacterial bacteria and another including Synechocystis and several non-photosynthetic bacteria. The function of the Synechocystis gene is supported by gene clustering with other photosynthetic genes, so the purpose of the gene in the non-photosynthetic bacteria is uncertain. Note that homologs of this gene are not found in plants which rely solely on the aerobic cyclase.
Probab=39.87 E-value=2.6e+02 Score=27.33 Aligned_cols=162 Identities=12% Similarity=0.097 Sum_probs=80.0
Q ss_pred CcchHHHHHHHHH-HhCCcEEecCCCC--CCHHHHHHHHHHhhhcCCcCCCCeEEeeccCCCCCCCCcHHHHHHHHHHhc
Q 021264 27 DPGIVGNAVDVAI-KAGYRHIDCARLY--LNEKEIGFVLKKLFEDGVVKREDLWITSKLWCTDLAPKDVPEALDNTLQDL 103 (315)
Q Consensus 27 ~~~~~~~~l~~A~-~~Gi~~~DtA~~Y--gse~~lG~~l~~~~~~~~~~R~~~~i~tK~~~~~~~~~~i~~~ve~sL~~L 103 (315)
+.+.+.+-++... +.|+++|..++.. .+.+.+-+.++...+++.+ .-.+.+.|.+ ..... ...+-+.+++.
T Consensus 223 s~e~Vv~Ei~~l~~~~gv~~~~~~Dd~f~~~~~~~~~l~~~l~~~~~l-~i~w~~~~r~--~~i~~---d~ell~~l~~a 296 (497)
T TIGR02026 223 DPKKFVDEIEWLVRTHGVGFFILADEEPTINRKKFQEFCEEIIARNPI-SVTWGINTRV--TDIVR---DADILHLYRRA 296 (497)
T ss_pred CHHHHHHHHHHHHHHcCCCEEEEEecccccCHHHHHHHHHHHHhcCCC-CeEEEEeccc--ccccC---CHHHHHHHHHh
Confidence 4455666666655 4699987554432 2433344444444222200 1112233433 11111 13455566777
Q ss_pred CCCccceEeeecCCCccCCCCCCCCCCCCCCCHHHHHHHHHHHHhcCCeee----EeecCCChhhHHHHHHhc-CCCCcc
Q 021264 104 QIDYVDLYLIHWPARMKKGSVGFNPENLLPLDIPSTWRAMEALYDSGKARA----IGVCNFSTKKLGDLLEIA-RVPPAV 178 (315)
Q Consensus 104 g~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~L~~lk~~GkIr~----iGvS~~~~~~l~~~~~~~-~~~~~~ 178 (315)
|+.++-+-. .+.+...-. .+++ ....++..++++.+++.|..-. +|+-+.+.+.+++.++.. ..+++.
T Consensus 297 G~~~v~iGi-ES~~~~~L~--~~~K----~~t~~~~~~ai~~l~~~Gi~~~~~~I~G~P~et~e~~~~t~~~~~~l~~~~ 369 (497)
T TIGR02026 297 GLVHISLGT-EAAAQATLD--HFRK----GTTTSTNKEAIRLLRQHNILSEAQFITGFENETDETFEETYRQLLDWDPDQ 369 (497)
T ss_pred CCcEEEEcc-ccCCHHHHH--HhcC----CCCHHHHHHHHHHHHHCCCcEEEEEEEECCCCCHHHHHHHHHHHHHcCCCc
Confidence 765444421 111110000 0000 1456788999999999987332 566666777776665543 244554
Q ss_pred cccccCcccchHHHHHHHHHcCc
Q 021264 179 NQVECHSSWQQQKLHAFCKSKGV 201 (315)
Q Consensus 179 ~q~~~n~~~~~~~~~~~~~~~gi 201 (315)
+++..--..+..++.+.+++.+.
T Consensus 370 ~~~~~~tP~PGT~l~~~~~~~~~ 392 (497)
T TIGR02026 370 ANWLMYTPWPFTSLFGELSDRVE 392 (497)
T ss_pred eEEEEecCCCCcHHHHHHHhhcc
Confidence 44432222334678887777653
No 125
>PRK14466 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=39.81 E-value=1.9e+02 Score=26.93 Aligned_cols=99 Identities=17% Similarity=0.145 Sum_probs=62.9
Q ss_pred eEeeecCCCccCCCCCCCCCCCCCCCHHHHHHHHHHHHhcC--C--eeeEeec--CCChhhHHHHHHhcC-CCCcccccc
Q 021264 110 LYLIHWPARMKKGSVGFNPENLLPLDIPSTWRAMEALYDSG--K--ARAIGVC--NFSTKKLGDLLEIAR-VPPAVNQVE 182 (315)
Q Consensus 110 l~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~L~~lk~~G--k--Ir~iGvS--~~~~~~l~~~~~~~~-~~~~~~q~~ 182 (315)
.+-||.|+......-...+.. .+++++++++++..+.. + +-|+=+. |.+.+++.++.+... .+..++-++
T Consensus 210 avSLha~~~e~R~~i~P~~~~---~~l~~l~~al~~y~~~~~rri~~Ey~Li~gvND~~e~a~~L~~ll~~~~~~VNLIp 286 (345)
T PRK14466 210 AISLHSPFPEQRRELMPAEKA---FSIKEIIDLLKNYDFSKQRRVSFEYIVFKGLNDSLKHAKELVKLLRGIDCRVNLIR 286 (345)
T ss_pred EEEcCCCCHHHHHHhcCCccC---CCHHHHHHHHHHHHHhhCCEEEEEEEEeCCCCCCHHHHHHHHHHHcCCCceEEEEe
Confidence 478898876532211111111 56889999999875443 2 2244443 456777888777654 556788888
Q ss_pred cCcccc-----h-----HHHHHHHHHcCceEEEecCCCC
Q 021264 183 CHSSWQ-----Q-----QKLHAFCKSKGVHLSGYSPLGS 211 (315)
Q Consensus 183 ~n~~~~-----~-----~~~~~~~~~~gi~v~~~~pl~~ 211 (315)
||+... . ....+..+++|+.+......+.
T Consensus 287 ~Np~~~~~~~~~s~~~~~~F~~~L~~~gi~~tvR~s~G~ 325 (345)
T PRK14466 287 FHAIPGVDLEGSDMARMEAFRDYLTSHGVFTTIRASRGE 325 (345)
T ss_pred cCCCCCCCCcCCCHHHHHHHHHHHHHCCCcEEEeCCCCC
Confidence 886432 1 3566778899999999877743
No 126
>cd01968 Nitrogenase_NifE_I Nitrogenase_NifE_I: a subgroup of the NifE subunit of the NifEN complex: NifE forms an alpha2beta2 tetramer with NifN. NifE and NifN are structurally homologous to nitrogenase MoFe protein alpha and beta subunits respectively. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of the MoFe protein. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to the NifEN complex where it is further processed to FeMoco. The NifEN bound precursor of FeMoco has been identified as a molybdenum-free, iron- and sulfur- containing analog of FeMoco. It has been suggested that this NifEN bound precursor also acts as a cofactor precursor in nitrogenase systems which require a cofactor other than FeMoco: i.e. iron-vanadium cofactor (FeVco) or iron only cofactor (FeFeco).
Probab=39.53 E-value=3.4e+02 Score=25.71 Aligned_cols=109 Identities=15% Similarity=0.164 Sum_probs=62.1
Q ss_pred CCCCHHHHHHHHHHhhhcCCcCCCCeEEeeccCCCCCCCCcHHHHHHHHHHhcCCCccceEeeecCCCccCCCCCCCCCC
Q 021264 51 LYLNEKEIGFVLKKLFEDGVVKREDLWITSKLWCTDLAPKDVPEALDNTLQDLQIDYVDLYLIHWPARMKKGSVGFNPEN 130 (315)
Q Consensus 51 ~Ygse~~lG~~l~~~~~~~~~~R~~~~i~tK~~~~~~~~~~i~~~ve~sL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~ 130 (315)
.||.++.|-++|++..++. +++-++|.|-. ....-.+.+..-+++.-++.+ +.++.+|.|.......
T Consensus 67 VfGg~~~L~~~i~~~~~~~--~P~~i~v~~tC-~~~~iGdDi~~v~~~~~~~~~---~~vi~v~t~gf~g~~~------- 133 (410)
T cd01968 67 IFGGEKKLYKAILEIIERY--HPKAVFVYSTC-VVALIGDDIDAVCKTASEKFG---IPVIPVHSPGFVGNKN------- 133 (410)
T ss_pred eeccHHHHHHHHHHHHHhC--CCCEEEEECCC-chhhhccCHHHHHHHHHHhhC---CCEEEEECCCcccChh-------
Confidence 4788888999998876543 44445555554 334444455555555444443 6788999887642110
Q ss_pred CCCCCHHHHHHHHHHHH---------hcCCeeeEeecCCC--hhhHHHHHHhcCCC
Q 021264 131 LLPLDIPSTWRAMEALY---------DSGKARAIGVCNFS--TKKLGDLLEIARVP 175 (315)
Q Consensus 131 ~~~~~~~~~~~~L~~lk---------~~GkIr~iGvS~~~--~~~l~~~~~~~~~~ 175 (315)
.....++++|-+.. .++.|--||-.+.. .+.+.++++..++.
T Consensus 134 ---~G~~~a~~~l~~~l~~~~~~~~~~~~~VNiig~~~~~~d~~el~~lL~~~Gl~ 186 (410)
T cd01968 134 ---LGNKLACEALLDHVIGTEEPEPLTPYDINLIGEFNVAGELWGVKPLLEKLGIR 186 (410)
T ss_pred ---HHHHHHHHHHHHHhcCCCCcccCCCCcEEEECCCCCcccHHHHHHHHHHcCCe
Confidence 22333444444332 14678888844433 34667777776654
No 127
>PF11242 DUF2774: Protein of unknown function (DUF2774); InterPro: IPR021404 This entry is represented by Bacteriophage T4, Gp24.3; it is a family of uncharacterised viral proteins.
Probab=39.36 E-value=44 Score=22.59 Aligned_cols=23 Identities=30% Similarity=0.426 Sum_probs=20.3
Q ss_pred HHHHHHHHhCCCHHHHHHHHHhh
Q 021264 226 VLKTAAEKLGKTPAQVALRWGLQ 248 (315)
Q Consensus 226 ~l~~la~~~~~s~aq~al~~~l~ 248 (315)
-+.+||+++|+++.+++..|+.-
T Consensus 15 ~FveIAr~~~i~a~e~a~~w~~V 37 (63)
T PF11242_consen 15 SFVEIARKIGITAKEVAKAWAEV 37 (63)
T ss_pred cHHHHHHHhCCCHHHHHHHHHHH
Confidence 37889999999999999999863
No 128
>cd07937 DRE_TIM_PC_TC_5S Pyruvate carboxylase and Transcarboxylase 5S, carboxyltransferase domain. This family includes the carboxyltransferase domains of pyruvate carboxylase (PC) and the transcarboxylase (TC) 5S subunit. Transcarboxylase 5S is a cobalt-dependent metalloenzyme subunit of the biotin-dependent transcarboxylase multienzyme complex. Transcarboxylase 5S transfers carbon dioxide from the 1.3S biotin to pyruvate in the second of two carboxylation reactions catalyzed by TC. The first reaction involves the transfer of carbon dioxide from methylmalonyl-CoA to the 1.3S biotin, and is catalyzed by the 12S subunit. These two steps allow a carboxylate group to be transferred from oxaloacetate to propionyl-CoA to yield pyruvate and methylmalonyl-CoA. The catalytic domain of transcarboxylase 5S has a canonical TIM-barrel fold with a large C-terminal extension that forms a funnel leading to the active site. Transcarboxylase 5S forms a homodimer and there are six dimers per complex
Probab=38.95 E-value=2.4e+02 Score=25.13 Aligned_cols=114 Identities=8% Similarity=-0.032 Sum_probs=0.0
Q ss_pred HHHHHHHHHhcCCCccceEe----------eecCCCccCCCCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeeEeec----
Q 021264 93 PEALDNTLQDLQIDYVDLYL----------IHWPARMKKGSVGFNPENLLPLDIPSTWRAMEALYDSGKARAIGVC---- 158 (315)
Q Consensus 93 ~~~ve~sL~~Lg~d~iDl~~----------lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~L~~lk~~GkIr~iGvS---- 158 (315)
+..+-..|.++|+++|++-. +. .+..+.++.+.++..+-++..+.-+
T Consensus 23 ~~~ia~~L~~~Gv~~iE~G~~a~~~~~~~~~~-------------------~~~~e~i~~~~~~~~~~~l~~~~r~~~~~ 83 (275)
T cd07937 23 MLPIAEALDEAGFFSLEVWGGATFDVCMRFLN-------------------EDPWERLRELRKAMPNTPLQMLLRGQNLV 83 (275)
T ss_pred HHHHHHHHHHcCCCEEEccCCcchhhhccccC-------------------CCHHHHHHHHHHhCCCCceehhccccccc
Q ss_pred -------CCChhhHHHHHHhcCCCCcccccccCcccchHHHHHHHHHcCceEEEecCCCCCCCCCCccccCCchHHHHHH
Q 021264 159 -------NFSTKKLGDLLEIARVPPAVNQVECHSSWQQQKLHAFCKSKGVHLSGYSPLGSPGTRWIKSDVLRHPVLKTAA 231 (315)
Q Consensus 159 -------~~~~~~l~~~~~~~~~~~~~~q~~~n~~~~~~~~~~~~~~~gi~v~~~~pl~~gg~~~~~~~~~~~~~l~~la 231 (315)
+.....++...+ .+.+..-+-.+.|.+..-.+.+++++++|..+...-.+..+ .....+.+.+++
T Consensus 84 ~~~~~p~~~~~~di~~~~~-~g~~~iri~~~~~~~~~~~~~i~~ak~~G~~v~~~i~~~~~-------~~~~~~~~~~~~ 155 (275)
T cd07937 84 GYRHYPDDVVELFVEKAAK-NGIDIFRIFDALNDVRNLEVAIKAVKKAGKHVEGAICYTGS-------PVHTLEYYVKLA 155 (275)
T ss_pred CccCCCcHHHHHHHHHHHH-cCCCEEEEeecCChHHHHHHHHHHHHHCCCeEEEEEEecCC-------CCCCHHHHHHHH
Q ss_pred HH
Q 021264 232 EK 233 (315)
Q Consensus 232 ~~ 233 (315)
++
T Consensus 156 ~~ 157 (275)
T cd07937 156 KE 157 (275)
T ss_pred HH
No 129
>PRK14464 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=38.67 E-value=2.1e+02 Score=26.70 Aligned_cols=78 Identities=13% Similarity=0.086 Sum_probs=53.1
Q ss_pred CCHHHHHHHHHHHHhc-CC---eeeEeec--CCChhhHHHHHHhcC-CCCcccccccCcccch----------HHHHHHH
Q 021264 134 LDIPSTWRAMEALYDS-GK---ARAIGVC--NFSTKKLGDLLEIAR-VPPAVNQVECHSSWQQ----------QKLHAFC 196 (315)
Q Consensus 134 ~~~~~~~~~L~~lk~~-Gk---Ir~iGvS--~~~~~~l~~~~~~~~-~~~~~~q~~~n~~~~~----------~~~~~~~ 196 (315)
.+++++.+++.++.+. |+ +-++=+. |-+++++.++.+... .+..++-++||+.... ..+.+..
T Consensus 223 ~~l~el~~a~~~~~~~~grri~~EyvLl~GVNDs~e~a~~L~~~l~~~~~~vNLIPyN~v~g~~~~rp~~~~i~~f~~~L 302 (344)
T PRK14464 223 IAPEELVELGEAYARATGYPIQYQWTLLEGVNDSDEEMDGIVRLLKGKYAVMNLIPYNSVDGDAYRRPSGERIVAMARYL 302 (344)
T ss_pred CCHHHHHHHHHHHHHHHCCEEEEEEEEeCCCCCCHHHHHHHHHHHhccccccceecCCccCCCCccCCCHHHHHHHHHHH
Confidence 5788888888887544 42 1233222 456788888877653 5667888888875431 3567778
Q ss_pred HHcCceEEEecCCCC
Q 021264 197 KSKGVHLSGYSPLGS 211 (315)
Q Consensus 197 ~~~gi~v~~~~pl~~ 211 (315)
+.+|+.+......+.
T Consensus 303 ~~~gi~~tiR~~~G~ 317 (344)
T PRK14464 303 HRRGVLTKVRNSAGQ 317 (344)
T ss_pred HHCCceEEEECCCCC
Confidence 889999999888743
No 130
>PF01081 Aldolase: KDPG and KHG aldolase; InterPro: IPR000887 4-Hydroxy-2-oxoglutarate aldolase (4.1.3.16 from EC) (KHG-aldolase) catalyzes the interconversion of 4-hydroxy-2-oxoglutarate into pyruvate and glyoxylate. Phospho-2-dehydro-3-deoxygluconate aldolase (4.1.2.14 from EC) (KDPG-aldolase) catalyzes the interconversion of 6-phospho-2-dehydro-3-deoxy-D-gluconate into pyruvate and glyceraldehyde 3-phosphate. These two enzymes are structurally and functionally related []. They are both homotrimeric proteins of approximately 220 amino-acid residues. They are class I aldolases whose catalytic mechanism involves the formation of a Schiff-base intermediate between the substrate and the epsilon-amino group of a lysine residue. In both enzymes, an arginine is required for catalytic activity.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VCR_A 1FQ0_A 1EUN_A 1EUA_B 1FWR_A 2C0A_B 1WBH_A 1WAU_A 2YW3_B 2YW4_A ....
Probab=38.62 E-value=1.6e+02 Score=25.05 Aligned_cols=31 Identities=29% Similarity=0.300 Sum_probs=18.0
Q ss_pred CHHHHHHHHHHHHhcCCeeeEeecCCChhhHH
Q 021264 135 DIPSTWRAMEALYDSGKARAIGVCNFSTKKLG 166 (315)
Q Consensus 135 ~~~~~~~~L~~lk~~GkIr~iGvS~~~~~~l~ 166 (315)
+.++..+..+.|.+.| |+.+=++..++..++
T Consensus 18 ~~~~a~~~~~al~~gG-i~~iEiT~~t~~a~~ 48 (196)
T PF01081_consen 18 DPEDAVPIAEALIEGG-IRAIEITLRTPNALE 48 (196)
T ss_dssp SGGGHHHHHHHHHHTT---EEEEETTSTTHHH
T ss_pred CHHHHHHHHHHHHHCC-CCEEEEecCCccHHH
Confidence 3456666667776666 677777766654443
No 131
>PRK01222 N-(5'-phosphoribosyl)anthranilate isomerase; Provisional
Probab=38.54 E-value=87 Score=26.81 Aligned_cols=85 Identities=16% Similarity=0.208 Sum_probs=47.3
Q ss_pred HHHhcCCCccceEeeecCCCccCCCCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeeEeec-CCChhhHHHHHHhcCCCCc
Q 021264 99 TLQDLQIDYVDLYLIHWPARMKKGSVGFNPENLLPLDIPSTWRAMEALYDSGKARAIGVC-NFSTKKLGDLLEIARVPPA 177 (315)
Q Consensus 99 sL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~L~~lk~~GkIr~iGvS-~~~~~~l~~~~~~~~~~~~ 177 (315)
.+..+|.|++=+++.. ... . . .+.+.+-+....+ .+.+..+||. +-+++.+.++++. ..++
T Consensus 18 ~~~~~Gad~iGfI~~~--~S~--R-------~---V~~~~a~~i~~~~--~~~i~~VgVf~~~~~~~i~~~~~~--~~~d 79 (210)
T PRK01222 18 AAAELGADAIGFVFYP--KSP--R-------Y---VSPEQAAELAAAL--PPFVKVVGVFVNASDEEIDEIVET--VPLD 79 (210)
T ss_pred HHHHcCCCEEEEccCC--CCC--C-------c---CCHHHHHHHHHhC--CCCCCEEEEEeCCCHHHHHHHHHh--cCCC
Confidence 4457899998887432 211 1 0 3333333333333 2568889987 4577777777765 4458
Q ss_pred ccccccCcccchHHHHHHHHH-cCceEE
Q 021264 178 VNQVECHSSWQQQKLHAFCKS-KGVHLS 204 (315)
Q Consensus 178 ~~q~~~n~~~~~~~~~~~~~~-~gi~v~ 204 (315)
++|++-+- ..+.++..++ .++.++
T Consensus 80 ~vQLHg~e---~~~~~~~l~~~~~~~ii 104 (210)
T PRK01222 80 LLQLHGDE---TPEFCRQLKRRYGLPVI 104 (210)
T ss_pred EEEECCCC---CHHHHHHHHhhcCCcEE
Confidence 99998642 2333444443 345444
No 132
>PRK14465 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=38.52 E-value=2.4e+02 Score=26.18 Aligned_cols=98 Identities=11% Similarity=0.154 Sum_probs=60.3
Q ss_pred EeeecCCCccCCCCCCCCCCCCCCCHHHHHHHHHHHHhc-CC---eeeEeecC--CChhhHHHHHHhcC-CCCccccccc
Q 021264 111 YLIHWPARMKKGSVGFNPENLLPLDIPSTWRAMEALYDS-GK---ARAIGVCN--FSTKKLGDLLEIAR-VPPAVNQVEC 183 (315)
Q Consensus 111 ~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~L~~lk~~-Gk---Ir~iGvS~--~~~~~l~~~~~~~~-~~~~~~q~~~ 183 (315)
+.||.|+.........-+.. .+.+++++++.++.++ |+ ++++=+.+ .+.++++++.+... .+..++.++|
T Consensus 216 iSLhA~~~e~R~~l~Pi~~~---~~le~ll~al~~~~~~~~r~v~ieyvLI~GvNDs~eda~~L~~ll~~l~~kVnLIPy 292 (342)
T PRK14465 216 ISLNHPDPNGRLQIMDIEEK---FPLEELLQAAKDFTRELKRRITFEYVMIPGVNMGRENANKLVKIARSLDCKINVIPL 292 (342)
T ss_pred EEecCCChhhcceEeecccc---CCHHHHHHHHHHHHHHcCCEEEEEEEEECCccCCHHHHHHHHHHHhhCCCcEEEEcc
Confidence 67898887654432211111 4678999999977644 33 33554544 34566666666543 3456777777
Q ss_pred Ccccch---------HHHHHHHHHcCceEEEecCCCC
Q 021264 184 HSSWQQ---------QKLHAFCKSKGVHLSGYSPLGS 211 (315)
Q Consensus 184 n~~~~~---------~~~~~~~~~~gi~v~~~~pl~~ 211 (315)
|+.... ....+..+++|+.+......+.
T Consensus 293 N~~~~~~~~ps~e~i~~F~~~L~~~Gi~v~~R~~~G~ 329 (342)
T PRK14465 293 NTEFFGWRRPTDDEVAEFIMLLEPAGVPILNRRSPGK 329 (342)
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHCCCeEEEeCCCCc
Confidence 764311 3466678888999999877743
No 133
>cd03770 SR_TndX_transposase Serine Recombinase (SR) family, TndX-like transposase subfamily, catalytic domain; composed of large serine recombinases similar to Clostridium TndX and TnpX transposases. Serine recombinases catalyze site-specific recombination of DNA molecules by a concerted, four-strand cleavage and rejoining mechanism which involves a transient phosphoserine linkage between DNA and the enzyme. They are functionally versatile and include resolvases, invertases, integrases, and transposases. TndX mediates the excision and circularization of the conjugative transposon Tn5397 from Clostridium difficile. TnpX is responsible for the movement of the nonconjugative chloramphenicol resistance elements of the Tn4451/3 family. Mobile genetic elements such as transposons are important vehicles for the transmission of virulence and antibiotic resistance in many microorganisms.
Probab=38.43 E-value=58 Score=25.72 Aligned_cols=53 Identities=15% Similarity=0.255 Sum_probs=39.5
Q ss_pred HHHHHHHHHhcCCCccceEeeecCCCccCCCCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeeEeec
Q 021264 93 PEALDNTLQDLQIDYVDLYLIHWPARMKKGSVGFNPENLLPLDIPSTWRAMEALYDSGKARAIGVC 158 (315)
Q Consensus 93 ~~~ve~sL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~L~~lk~~GkIr~iGvS 158 (315)
+..+.+.|+.+....+|.++++..++.. .+..+....++.|.+.-.|+-+-+.
T Consensus 54 Rp~l~~ll~~~~~g~vd~vvv~~ldRl~-------------R~~~d~~~~~~~l~~~~gv~l~~~~ 106 (140)
T cd03770 54 RPGFNRMIEDIEAGKIDIVIVKDMSRLG-------------RNYLKVGLYMEILFPKKGVRFIAIN 106 (140)
T ss_pred CHHHHHHHHHHHcCCCCEEEEeccchhc-------------cCHHHHHHHHHHHHhhcCcEEEEec
Confidence 5677788888888889999999988864 4567788888888887334444443
No 134
>COG1099 Predicted metal-dependent hydrolases with the TIM-barrel fold [General function prediction only]
Probab=38.38 E-value=1.8e+02 Score=25.37 Aligned_cols=69 Identities=13% Similarity=0.050 Sum_probs=44.3
Q ss_pred HHHHHHHHcCceEEEecCCCCCCCCCCccccCCchHHHHHHHHhCCCHHHHHH--------HHHhhcC----CeeecCCC
Q 021264 191 KLHAFCKSKGVHLSGYSPLGSPGTRWIKSDVLRHPVLKTAAEKLGKTPAQVAL--------RWGLQMG----HSVLPKST 258 (315)
Q Consensus 191 ~~~~~~~~~gi~v~~~~pl~~gg~~~~~~~~~~~~~l~~la~~~~~s~aq~al--------~~~l~~~----~~~i~G~~ 258 (315)
+-++.|++.+++++.+.|=.+ ..-.-.++-+++...|+.+.++.+ .|++..+ .++=||-=
T Consensus 118 ~QL~LA~e~dvPviVHTPr~n--------K~e~t~~ildi~~~~~l~~~lvvIDH~N~etv~~vld~e~~vGlTvqPgKl 189 (254)
T COG1099 118 EQLELARELDVPVIVHTPRRN--------KKEATSKILDILIESGLKPSLVVIDHVNEETVDEVLDEEFYVGLTVQPGKL 189 (254)
T ss_pred HHHHHHHHcCCcEEEeCCCCc--------chhHHHHHHHHHHHcCCChhheehhcccHHHHHHHHhccceEEEEecCCcC
Confidence 457889999999999999844 222234566777888887766554 4455554 24445555
Q ss_pred CHHHHHHhh
Q 021264 259 NEARIKENF 267 (315)
Q Consensus 259 ~~~~l~~nl 267 (315)
++++.-+.+
T Consensus 190 t~~eAveIV 198 (254)
T COG1099 190 TVEEAVEIV 198 (254)
T ss_pred CHHHHHHHH
Confidence 555544444
No 135
>PRK14456 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=38.32 E-value=1.8e+02 Score=27.36 Aligned_cols=98 Identities=11% Similarity=0.081 Sum_probs=59.8
Q ss_pred EeeecCCCccCCCCCCCCCCCCCCCHHHHHHHHHH-HHhcC---CeeeEeecC--CChhhHHHHHHhcC-CCCccccccc
Q 021264 111 YLIHWPARMKKGSVGFNPENLLPLDIPSTWRAMEA-LYDSG---KARAIGVCN--FSTKKLGDLLEIAR-VPPAVNQVEC 183 (315)
Q Consensus 111 ~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~L~~-lk~~G---kIr~iGvS~--~~~~~l~~~~~~~~-~~~~~~q~~~ 183 (315)
+.||.++............ ...+++++++++.+ +++.| +|+++=+.. .+.+++.++.+... .+..++-++|
T Consensus 238 iSL~a~~~e~r~~i~P~~~--~~~~l~~l~~~i~~~~~~~g~~V~ieyvLI~GvNDs~eda~~L~~~l~~~~~~VnlIpy 315 (368)
T PRK14456 238 VSLHSADQEKRERLMPQAA--RDYPLDELREALIGYASKTGEPVTLVYMLLEGINDSPEDARKLIRFASRFFCKINLIDY 315 (368)
T ss_pred EEecCCCHHHHHHhccccC--CCCCHHHHHHHHHHHHHhcCCeEEEEEEEEcCCCCCHHHHHHHHHHHhcCCCeeEEeee
Confidence 6788877653221110000 01578899999885 45556 245555554 34456777776654 3456677777
Q ss_pred Ccccch----------HHHHHHHHHcCceEEEecCCC
Q 021264 184 HSSWQQ----------QKLHAFCKSKGVHLSGYSPLG 210 (315)
Q Consensus 184 n~~~~~----------~~~~~~~~~~gi~v~~~~pl~ 210 (315)
|++... ..+.+..+++|+.+......+
T Consensus 316 n~~~~~~~~~ps~e~i~~F~~~L~~~Gi~vtvR~~~G 352 (368)
T PRK14456 316 NSIVNIKFEPVCSSTRERFRDRLLDAGLQVTVRKSYG 352 (368)
T ss_pred ccCCCCCCCCCCHHHHHHHHHHHHHCCCcEEeeCCCC
Confidence 776432 356777888899999887774
No 136
>PRK09061 D-glutamate deacylase; Validated
Probab=38.09 E-value=3.6e+02 Score=26.51 Aligned_cols=112 Identities=12% Similarity=0.072 Sum_probs=64.0
Q ss_pred HHHHHHHHHHhCCcEEecCCCC--C-CHHHHHHHHHHhhhcCCcCCCCeEEeeccCCCCC-CCCcHHHHHHHHHHhcCCC
Q 021264 31 VGNAVDVAIKAGYRHIDCARLY--L-NEKEIGFVLKKLFEDGVVKREDLWITSKLWCTDL-APKDVPEALDNTLQDLQID 106 (315)
Q Consensus 31 ~~~~l~~A~~~Gi~~~DtA~~Y--g-se~~lG~~l~~~~~~~~~~R~~~~i~tK~~~~~~-~~~~i~~~ve~sL~~Lg~d 106 (315)
..++++.|++.|+..|-+...| + +...+-..++.. .+-+..+......... ++.....++++.++....-
T Consensus 171 m~~ll~~al~~Ga~gis~~~~y~p~~~~~eL~~l~~~A------~~~g~~v~~H~e~~~~~~~~~e~~av~~~i~lA~~~ 244 (509)
T PRK09061 171 ILELLEQGLDEGALGIGIGAGYAPGTGHKEYLELARLA------ARAGVPTYTHVRYLSNVDPRSSVDAYQELIAAAAET 244 (509)
T ss_pred HHHHHHHHHHCCCCEEecCCccCCCCCHHHHHHHHHHH------HHcCCEEEEEecCcccCCchhHHHHHHHHHHHHHHh
Confidence 5667888999999999876556 2 444455555553 3556777777743222 2222334555555433322
Q ss_pred ccceEeeecCCCccCCCCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeeEeecCCC
Q 021264 107 YVDLYLIHWPARMKKGSVGFNPENLLPLDIPSTWRAMEALYDSGKARAIGVCNFS 161 (315)
Q Consensus 107 ~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~L~~lk~~GkIr~iGvS~~~ 161 (315)
-.-+...|-..... ....+.++.+++++++|.--..-++.|.
T Consensus 245 G~rv~IsHlss~g~-------------~~~~~~le~I~~Ar~~Gi~Vt~e~~P~~ 286 (509)
T PRK09061 245 GAHMHICHVNSTSL-------------RDIDRCLALVEKAQAQGLDVTTEAYPYG 286 (509)
T ss_pred CCCEEEEeeccCCc-------------ccHHHHHHHHHHHHHcCCcEEEEecCcc
Confidence 23355556432211 3457889999999999853333444333
No 137
>cd01971 Nitrogenase_VnfN_like Nitrogenase_vnfN_like: VnfN subunit of the VnfEN complex-like. This group in addition to VnfN contains a subset of the beta subunit of the nitrogenase MoFe protein and NifN-like proteins. The nitrogenase enzyme system catalyzes the ATP-dependent reduction of dinitrogen to ammonia. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of MoFe protein of the molybdenum(Mo)-nitrogenase. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to NifEN where it is further processed to FeMoco. VnfEN may similarly be a scaffolding protien for the iron-vanadium cofactor (FeVco) of the vanadium-dependent (V)-nitrogenase. NifE and NifN are essential for the Mo-nitrogenase, VnfE and VnfN are not essential for the V-nitrogenase. NifE and NifN can substitute when the vnfEN genes are inactivated.
Probab=37.87 E-value=3.4e+02 Score=25.95 Aligned_cols=109 Identities=9% Similarity=0.045 Sum_probs=62.8
Q ss_pred CCCCHHHHHHHHHHhhhcCCcCCCCeEEeeccCCCCCCCCcHHHHHHHHHHhcCCCccceEeeecCCCccCCCCCCCCCC
Q 021264 51 LYLNEKEIGFVLKKLFEDGVVKREDLWITSKLWCTDLAPKDVPEALDNTLQDLQIDYVDLYLIHWPARMKKGSVGFNPEN 130 (315)
Q Consensus 51 ~Ygse~~lG~~l~~~~~~~~~~R~~~~i~tK~~~~~~~~~~i~~~ve~sL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~ 130 (315)
.||.++.|-++|++..++. +.+-++|.|-. ....--+.+..-+++. ++.+ ++++.+|.|.......
T Consensus 67 V~Gg~~kL~~~I~~~~~~~--~p~~I~V~ttC-~~~~IGdDi~~v~~~~-~~~~---~~vi~v~t~gf~g~~~------- 132 (427)
T cd01971 67 VFGGEDRLRELIKSTLSII--DADLFVVLTGC-IAEIIGDDVGAVVSEF-QEGG---APIVYLETGGFKGNNY------- 132 (427)
T ss_pred EeCCHHHHHHHHHHHHHhC--CCCEEEEEcCC-cHHHhhcCHHHHHHHh-hhcC---CCEEEEECCCcCcccc-------
Confidence 4788888888888765443 44455565554 3333344555555554 5544 7899999887653211
Q ss_pred CCCCCHHHHHHHHHH-H------HhcCCeeeEeecC-------CChhhHHHHHHhcCCCC
Q 021264 131 LLPLDIPSTWRAMEA-L------YDSGKARAIGVCN-------FSTKKLGDLLEIARVPP 176 (315)
Q Consensus 131 ~~~~~~~~~~~~L~~-l------k~~GkIr~iGvS~-------~~~~~l~~~~~~~~~~~ 176 (315)
...+.++++|-+ + ++.+.|--||..+ .+.+.+.++++..++.+
T Consensus 133 ---~G~~~a~~al~~~~~~~~~~~~~~~VNiiG~~~~~~~~~~~d~~elk~lL~~~Gl~v 189 (427)
T cd01971 133 ---AGHEIVLKAIIDQYVGQSEEKEPGLVNLWGPVPYQDPFWRGDLEEIKRVLEGIGLKV 189 (427)
T ss_pred ---cHHHHHHHHHHHHhccCCCCCCCCeEEEEeccCCccccccccHHHHHHHHHHCCCeE
Confidence 223334444433 2 2235688888643 23466777777766544
No 138
>TIGR01278 DPOR_BchB light-independent protochlorophyllide reductase, B subunit. This enzyme describes the B subunit of the dark form protochlorophyllide reductase, a nitrogenase-like enzyme. This subunit shows homology to the nitrogenase molybdenum-iron protein. It catalyzes a step in bacteriochlorophyll biosynthesis.
Probab=37.81 E-value=1.5e+02 Score=29.27 Aligned_cols=107 Identities=12% Similarity=0.104 Sum_probs=58.1
Q ss_pred CCCHHHHHHHHHHhhhcCCcCCCCeEEeeccCCCCCCCCcHHHHHHHHHHhcCCCccceEeeecCCCccCCCCCCCCCCC
Q 021264 52 YLNEKEIGFVLKKLFEDGVVKREDLWITSKLWCTDLAPKDVPEALDNTLQDLQIDYVDLYLIHWPARMKKGSVGFNPENL 131 (315)
Q Consensus 52 Ygse~~lG~~l~~~~~~~~~~R~~~~i~tK~~~~~~~~~~i~~~ve~sL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~ 131 (315)
+|+++.|-++|++..++. +++-++|.+-+ .. +-+-..++...++++.+.++++.++.|.......
T Consensus 67 ~G~~~~L~~aI~~~~~~~--~P~~I~V~sTC-~s----elIGdDi~~~~~~~~~~~~pvi~v~t~gf~g~~~-------- 131 (511)
T TIGR01278 67 RGSQTRLVDTVRRVDDRF--KPDLIVVTPSC-TS----SLLQEDLGNLAAAAGLDKSKVIVADVNAYRRKEN-------- 131 (511)
T ss_pred cchHHHHHHHHHHHHHhc--CCCEEEEeCCC-hH----HHhccCHHHHHHHhccCCCcEEEecCCCcccchh--------
Confidence 778888888888765433 33334444443 22 2233444444555555468899999887642110
Q ss_pred CCCCHHHHHHHHHH-H----------HhcCCeeeEeecCC------ChhhHHHHHHhcCCC
Q 021264 132 LPLDIPSTWRAMEA-L----------YDSGKARAIGVCNF------STKKLGDLLEIARVP 175 (315)
Q Consensus 132 ~~~~~~~~~~~L~~-l----------k~~GkIr~iGvS~~------~~~~l~~~~~~~~~~ 175 (315)
.....+++.+-+ + .+.++|--||.++. +...+.++++..++.
T Consensus 132 --~g~~~al~~lv~~~~~~~~~~~~~~~~~~VNIiG~~~l~~~~~~D~~elkrlL~~lGi~ 190 (511)
T TIGR01278 132 --QAADRTLTQLVRRFAKEQPKPGRTTEKPSVNLLGPASLGFHHRHDLIELRRLLKTLGIE 190 (511)
T ss_pred --HHHHHHHHHHHHHHHhccccccccCCCCcEEEEeCCCCCCCCHHHHHHHHHHHHHCCCe
Confidence 112223332221 1 23456888998763 335566666665543
No 139
>cd07943 DRE_TIM_HOA 4-hydroxy-2-oxovalerate aldolase, N-terminal catalytic TIM barrel domain. 4-hydroxy 2-ketovalerate aldolase (Also known as 4-hydroxy-2-ketovalerate aldolase and 4-hydroxy-2-oxopentanoate aldolase (HOA)) converts 4-hydroxy-2-oxopentanoate to acetaldehyde and pyruvate, the penultimate step in the meta-cleavage pathway for the degradation of phenols, cresols and catechol. This family includes the Escherichia coli MhpE aldolase, the Pseudomonas DmpG aldolase, and the Burkholderia xenovorans BphI pyruvate aldolase. In Pseudomonas, the DmpG aldolase tightly associates with a dehydrogenase (DmpF ) and is inactive without it. HOA has a canonical TIM-barrel fold with a C-terminal extension that forms a funnel leading to the active site. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate
Probab=37.74 E-value=2.9e+02 Score=24.37 Aligned_cols=124 Identities=15% Similarity=0.062 Sum_probs=67.8
Q ss_pred cCCCCccCccccccCcCCcchHHHHHHHHHHhCCcEEecCC-------C----C---CCHHHHHHHHHHhhhcCCcCCCC
Q 021264 10 LNTGAKMPSVGLGTWQADPGIVGNAVDVAIKAGYRHIDCAR-------L----Y---LNEKEIGFVLKKLFEDGVVKRED 75 (315)
Q Consensus 10 l~tg~~vs~lglG~~~~~~~~~~~~l~~A~~~Gi~~~DtA~-------~----Y---gse~~lG~~l~~~~~~~~~~R~~ 75 (315)
|+.|...+. +.++.++..++++...+.||..++... . | ..++.+....+.. +..+
T Consensus 8 lRDG~Q~~~-----~~~~~~~k~~i~~~L~~~Gv~~iEvg~~~~~~~~~~~~~~~~~~~~e~i~~~~~~~------~~~~ 76 (263)
T cd07943 8 LRDGMHAVR-----HQFTLEQVRAIARALDAAGVPLIEVGHGDGLGGSSLNYGFAAHTDEEYLEAAAEAL------KQAK 76 (263)
T ss_pred CCcCcccCC-----eecCHHHHHHHHHHHHHcCCCEEEeecCCCCCCcccccCCCCCChHHHHHHHHHhc------cCCE
Confidence 455555432 345668899999999999999999971 1 2 1234443333321 3333
Q ss_pred eEEeeccCCCCCCCCcHHHHHHHHHHhcCCCccceEeeecCCCccCCCCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeeE
Q 021264 76 LWITSKLWCTDLAPKDVPEALDNTLQDLQIDYVDLYLIHWPARMKKGSVGFNPENLLPLDIPSTWRAMEALYDSGKARAI 155 (315)
Q Consensus 76 ~~i~tK~~~~~~~~~~i~~~ve~sL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~L~~lk~~GkIr~i 155 (315)
+.+..-. ... . .+.++.+++ .|++.+-++. +. -+...+.+.++.+|+.|.--.+
T Consensus 77 ~~~~~~~--~~~---~-~~~i~~a~~-~g~~~iri~~---~~----------------s~~~~~~~~i~~ak~~G~~v~~ 130 (263)
T cd07943 77 LGVLLLP--GIG---T-VDDLKMAAD-LGVDVVRVAT---HC----------------TEADVSEQHIGAARKLGMDVVG 130 (263)
T ss_pred EEEEecC--Ccc---C-HHHHHHHHH-cCCCEEEEEe---ch----------------hhHHHHHHHHHHHHHCCCeEEE
Confidence 3322211 011 1 355666664 3666555442 11 1234677889999999986555
Q ss_pred eecC---CChhhHHHHHH
Q 021264 156 GVCN---FSTKKLGDLLE 170 (315)
Q Consensus 156 GvS~---~~~~~l~~~~~ 170 (315)
.++. ++++.+.++.+
T Consensus 131 ~~~~~~~~~~~~~~~~~~ 148 (263)
T cd07943 131 FLMMSHMASPEELAEQAK 148 (263)
T ss_pred EEEeccCCCHHHHHHHHH
Confidence 5533 34444444433
No 140
>COG1751 Uncharacterized conserved protein [Function unknown]
Probab=37.67 E-value=88 Score=25.48 Aligned_cols=68 Identities=13% Similarity=0.109 Sum_probs=43.3
Q ss_pred HHHHHHHHHHhCCcEEecCCCCC-CHHHHHHHHHHhhhcCCcCCCCeEEeec-cCCCCCCCCcHHHHHHHHHHhcCCC
Q 021264 31 VGNAVDVAIKAGYRHIDCARLYL-NEKEIGFVLKKLFEDGVVKREDLWITSK-LWCTDLAPKDVPEALDNTLQDLQID 106 (315)
Q Consensus 31 ~~~~l~~A~~~Gi~~~DtA~~Yg-se~~lG~~l~~~~~~~~~~R~~~~i~tK-~~~~~~~~~~i~~~ve~sL~~Lg~d 106 (315)
..-.+++|-+.||.+|=.|..|| ....+-+.+.. . =++++.|. .+-..-+...+...+++-|+..|.+
T Consensus 16 le~a~erA~elgik~~vVAS~tG~tA~k~lemveg-------~-lkvVvVthh~Gf~e~g~~e~~~E~~~~L~erGa~ 85 (186)
T COG1751 16 LEIAVERAKELGIKHIVVASSTGYTALKALEMVEG-------D-LKVVVVTHHAGFEEKGTQEMDEEVRKELKERGAK 85 (186)
T ss_pred HHHHHHHHHhcCcceEEEEecccHHHHHHHHhccc-------C-ceEEEEEeecccccCCceecCHHHHHHHHHcCce
Confidence 44567788899999999999998 32222222221 1 12454444 3334445556889999999999953
No 141
>PRK13602 putative ribosomal protein L7Ae-like; Provisional
Probab=37.63 E-value=91 Score=22.30 Aligned_cols=58 Identities=24% Similarity=0.268 Sum_probs=34.6
Q ss_pred HHHHHhcCCeeeEeecCCChhhHHHHHHhcCCCCcccccccCcccchHHHHHHHHHcCceEEEec
Q 021264 143 MEALYDSGKARAIGVCNFSTKKLGDLLEIARVPPAVNQVECHSSWQQQKLHAFCKSKGVHLSGYS 207 (315)
Q Consensus 143 L~~lk~~GkIr~iGvS~~~~~~l~~~~~~~~~~~~~~q~~~n~~~~~~~~~~~~~~~gi~v~~~~ 207 (315)
++++++.|++. +| ..+..+.++......+++--+... .....+..+|++++|+++-+.
T Consensus 3 ~~~~~ragkl~-~G-----~~~v~kai~~gkaklViiA~D~~~-~~~~~i~~~c~~~~Vp~~~~~ 60 (82)
T PRK13602 3 YEKVSQAKSIV-IG-----TKQTVKALKRGSVKEVVVAEDADP-RLTEKVEALANEKGVPVSKVD 60 (82)
T ss_pred hHHHHhcCCEE-Ec-----HHHHHHHHHcCCeeEEEEECCCCH-HHHHHHHHHHHHcCCCEEEEC
Confidence 46667777653 33 445556666555444444444333 122568888999999887764
No 142
>PRK05588 histidinol-phosphatase; Provisional
Probab=37.54 E-value=2.8e+02 Score=24.21 Aligned_cols=115 Identities=13% Similarity=0.112 Sum_probs=61.4
Q ss_pred chHHHHHHHHHHhCCcEEecCCCCC---C-H----HHHHHHHHHhhhcCCcCCCCeEEeeccCCCCCCCCcHHHHHHHHH
Q 021264 29 GIVGNAVDVAIKAGYRHIDCARLYL---N-E----KEIGFVLKKLFEDGVVKREDLWITSKLWCTDLAPKDVPEALDNTL 100 (315)
Q Consensus 29 ~~~~~~l~~A~~~Gi~~~DtA~~Yg---s-e----~~lG~~l~~~~~~~~~~R~~~~i~tK~~~~~~~~~~i~~~ve~sL 100 (315)
....+.+++|.+.|+..+ .+.+.. . . ..+-..++.. .+ .+..+|++-.-++ ..++ ....+++.|
T Consensus 16 ~~~ee~v~~A~~~Gl~~~-~TdH~~~~~~~~~~~~~~~~~y~~~i-~~--~~~~~I~~GiE~~---~~~~-~~~~~~~~l 87 (255)
T PRK05588 16 MKIEEAIKKAKENNLGII-ITEHMDLNLPDKNKFCFDVDSYFNKY-SK--YRNNKLLLGIELG---MEKD-LIEENKELI 87 (255)
T ss_pred cCHHHHHHHHHHcCCCEE-EeCCCCCCCCCccccccCHHHHHHHH-HH--HhcCCcceEEEec---ccCC-CHHHHHHHH
Confidence 447799999999999998 776631 0 0 0111222221 00 1223454444442 2333 467778888
Q ss_pred HhcCCCccceEeeecCCCccCCCCCCCCCCCCCCCHH----HHHHHHHHHHh-cCCeeeEe
Q 021264 101 QDLQIDYVDLYLIHWPARMKKGSVGFNPENLLPLDIP----STWRAMEALYD-SGKARAIG 156 (315)
Q Consensus 101 ~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~----~~~~~L~~lk~-~GkIr~iG 156 (315)
++...|++ +.-+|+.+...... ...+...+.+ ..++.+.++.+ .|++.-+|
T Consensus 88 ~~~~~D~v-igSvH~~~~~~~~~----~~~~~~~~~~~~~~~Y~~~~~~~v~~~~~~dvlg 143 (255)
T PRK05588 88 NKYEFDYV-IGSIHLVDKLDLYL----DEFYKDKSKEEAYHIYFENMLKCLEKYDFIDSLG 143 (255)
T ss_pred hhCCCCeE-EEeEEeeCCCcchH----HHHhcCCCHHHHHHHHHHHHHHHHHhcCCCCCcc
Confidence 88887777 78889864221100 0000002233 34577777776 46666665
No 143
>cd01948 EAL EAL domain. This domain is found in diverse bacterial signaling proteins. It is called EAL after its conserved residues and is also known as domain of unknown function 2 (DUF2). The EAL domain has been shown to stimulate degradation of a second messenger, cyclic di-GMP, and is a good candidate for a diguanylate phosphodiesterase function. Together with the GGDEF domain, EAL might be involved in regulating cell surface adhesiveness in bacteria.
Probab=37.39 E-value=2.5e+02 Score=23.60 Aligned_cols=117 Identities=18% Similarity=0.171 Sum_probs=71.3
Q ss_pred CCeEEeeccCCCCCCCCcHHHHHHHHHHhcCCCccceEeeecCCCccCCCCCCCCCCCCCCCHHHHHHHHHHHHhcCCee
Q 021264 74 EDLWITSKLWCTDLAPKDVPEALDNTLQDLQIDYVDLYLIHWPARMKKGSVGFNPENLLPLDIPSTWRAMEALYDSGKAR 153 (315)
Q Consensus 74 ~~~~i~tK~~~~~~~~~~i~~~ve~sL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~L~~lk~~GkIr 153 (315)
....+.-.+.......+.....+...++..+...-.+++-- +.... . .......+.++.+++.|-
T Consensus 82 ~~~~l~ini~~~~l~~~~~~~~~~~~l~~~~~~~~~l~iei-~e~~~-~-----------~~~~~~~~~~~~l~~~G~-- 146 (240)
T cd01948 82 PDLRLSVNLSARQLRDPDFLDRLLELLAETGLPPRRLVLEI-TESAL-I-----------DDLEEALATLRRLRALGV-- 146 (240)
T ss_pred CCeEEEEECCHHHhCCcHHHHHHHHHHHHcCCCHHHEEEEE-ecchh-h-----------CCHHHHHHHHHHHHHCCC--
Confidence 44455555544444445677888899999887653333322 11110 0 234568899999999998
Q ss_pred eEeecCCChh--hHHHHHHhcCCCCcccccccCcccc--------h--HHHHHHHHHcCceEEEecC
Q 021264 154 AIGVCNFSTK--KLGDLLEIARVPPAVNQVECHSSWQ--------Q--QKLHAFCKSKGVHLSGYSP 208 (315)
Q Consensus 154 ~iGvS~~~~~--~l~~~~~~~~~~~~~~q~~~n~~~~--------~--~~~~~~~~~~gi~v~~~~p 208 (315)
.+++.+++.. .++.+.. .+|+++-+..+.... . ..++..|+..|+.+++-+.
T Consensus 147 ~l~ld~~g~~~~~~~~l~~---~~~d~iKld~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~via~gV 210 (240)
T cd01948 147 RIALDDFGTGYSSLSYLKR---LPVDYLKIDRSFVRDIETDPEDRAIVRAIIALAHSLGLKVVAEGV 210 (240)
T ss_pred eEEEeCCCCcHhhHHHHHh---CCCCEEEECHHHHHhHhcChhhHHHHHHHHHHHHHCCCeEEEEec
Confidence 5788776543 2333322 456666666544322 1 4678899999999998543
No 144
>cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=37.33 E-value=3e+02 Score=24.56 Aligned_cols=159 Identities=17% Similarity=0.181 Sum_probs=86.7
Q ss_pred CCcchHHHHHHHHHHhCCcEEec----------CCCCC-CHHHHHHHHHHhhhcCCcCCC-CeEEeeccCCCCCCCCcHH
Q 021264 26 ADPGIVGNAVDVAIKAGYRHIDC----------ARLYL-NEKEIGFVLKKLFEDGVVKRE-DLWITSKLWCTDLAPKDVP 93 (315)
Q Consensus 26 ~~~~~~~~~l~~A~~~Gi~~~Dt----------A~~Yg-se~~lG~~l~~~~~~~~~~R~-~~~i~tK~~~~~~~~~~i~ 93 (315)
.+.++..+..+.+.+.|+..+|. ...|+ +.+.+-+.++.. .+. ++-|..|+.+. . +. .
T Consensus 99 ~~~~~~~~~a~~~~~~G~d~iElN~~cP~~~~~g~~~~~~~~~~~eiv~~v------r~~~~~Pv~vKl~~~-~--~~-~ 168 (296)
T cd04740 99 STVEEFVEVAEKLADAGADAIELNISCPNVKGGGMAFGTDPEAVAEIVKAV------KKATDVPVIVKLTPN-V--TD-I 168 (296)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEECCCCCCCCCcccccCCHHHHHHHHHHH------HhccCCCEEEEeCCC-c--hh-H
Confidence 35577788888888999999986 12243 455555555553 122 57788898542 1 12 2
Q ss_pred HHHHHHHHhcCCCccceEe------eecCCCc--cCCC-CCCCCCCCCCCCHHHHHHHHHHHHhcCCeeeEeecCC-Chh
Q 021264 94 EALDNTLQDLQIDYVDLYL------IHWPARM--KKGS-VGFNPENLLPLDIPSTWRAMEALYDSGKARAIGVCNF-STK 163 (315)
Q Consensus 94 ~~ve~sL~~Lg~d~iDl~~------lH~p~~~--~~~~-~~~~~~~~~~~~~~~~~~~L~~lk~~GkIr~iGvS~~-~~~ 163 (315)
..+-+.+...|.|.|++.- +|..... .... ...... ....-.++.+.++++.=.|.-||.... +++
T Consensus 169 ~~~a~~~~~~G~d~i~~~nt~~g~~~~~~~~~~~~~~~~gg~sg~----~~~~~~~~~i~~i~~~~~ipii~~GGI~~~~ 244 (296)
T cd04740 169 VEIARAAEEAGADGLTLINTLKGMAIDIETRKPILGNVTGGLSGP----AIKPIALRMVYQVYKAVEIPIIGVGGIASGE 244 (296)
T ss_pred HHHHHHHHHcCCCEEEEECCCcccccccccCceeecCCcceecCc----ccchHHHHHHHHHHHhcCCCEEEECCCCCHH
Confidence 3444567788877665531 1110000 0000 000000 111235677777777656888888885 678
Q ss_pred hHHHHHHhcCCCCcccccccCccc-ch------HHHHHHHHHcCc
Q 021264 164 KLGDLLEIARVPPAVNQVECHSSW-QQ------QKLHAFCKSKGV 201 (315)
Q Consensus 164 ~l~~~~~~~~~~~~~~q~~~n~~~-~~------~~~~~~~~~~gi 201 (315)
.+.+++.. + .+.+|+--.++. +. .++-++.+++|.
T Consensus 245 da~~~l~~-G--Ad~V~igra~l~~p~~~~~i~~~l~~~~~~~g~ 286 (296)
T cd04740 245 DALEFLMA-G--ASAVQVGTANFVDPEAFKEIIEGLEAYLDEEGI 286 (296)
T ss_pred HHHHHHHc-C--CCEEEEchhhhcChHHHHHHHHHHHHHHHHcCC
Confidence 88888863 3 356665433332 11 345556666653
No 145
>PF01175 Urocanase: Urocanase; InterPro: IPR023637 Urocanase [] (also known as imidazolonepropionate hydrolase or urocanate hydratase) is the enzyme that catalyzes the second step in the degradation of histidine, the hydration of urocanate into imidazolonepropionate. urocanate + H2O = 4,5-dihydro-4-oxo-5-imidazolepropanoate Urocanase is found in some bacteria (gene hutU), in the liver of many vertebrates and has also been found in the plant Trifolium repens (white clover). Urocanase is a protein of about 60 Kd, it binds tightly to NAD+ and uses it as an electrophil cofactor. A conserved cysteine has been found to be important for the catalytic mechanism and could be involved in the binding of the NAD+. This enzyme is a symmetric homodimer with tightly bound NAD+ cofactors. Each subunit consists of a typical NAD-binding domain inserted into a larger core domain that forms the dimer interface []. This entry represents the Urocanase subunit structural domain.; GO: 0016153 urocanate hydratase activity; PDB: 2V7G_A 1UWK_A 1UWL_B 1W1U_B 2FKN_C 1X87_B.
Probab=37.25 E-value=88 Score=30.58 Aligned_cols=130 Identities=14% Similarity=0.044 Sum_probs=77.2
Q ss_pred HHHHHHHHHHhCCcEEe--cCCCC---CC-------HHHHHHHHHHhhhcCCcCCCCeEEeeccCCCCCC----------
Q 021264 31 VGNAVDVAIKAGYRHID--CARLY---LN-------EKEIGFVLKKLFEDGVVKREDLWITSKLWCTDLA---------- 88 (315)
Q Consensus 31 ~~~~l~~A~~~Gi~~~D--tA~~Y---gs-------e~~lG~~l~~~~~~~~~~R~~~~i~tK~~~~~~~---------- 88 (315)
-.+-.+...+.|++.+= ||..| |+ -+++..+-++++... -+-++||++-++.-...
T Consensus 104 ~~e~f~~l~~~GltmYGQMTAGsw~YIG~QGIvqGTyeT~~~aark~~g~~--L~Gk~~lTaGLGGMgGAQplA~~m~g~ 181 (546)
T PF01175_consen 104 TWEHFERLEALGLTMYGQMTAGSWIYIGPQGIVQGTYETFLNAARKHFGGD--LAGKLFLTAGLGGMGGAQPLAATMAGG 181 (546)
T ss_dssp SHHHHHHHHHTT---B-TTTTTTT---TTHHHHHHHHHHHHHHHHHHSTTS---TT-EEEEE--STTCCHHHHHHHHTT-
T ss_pred CHHHHHHHHhccchhhccccccceEEEcccceeehhhHHHHHHHHHhcCCC--CcceEEEEecccccccchHHHHHhcCc
Confidence 34667888889998664 55444 22 455666667766432 57889999988652110
Q ss_pred -CCcHHHHHHHHHHhcCCCccceEeeecCCCccCCCCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeeEeecCCChhhHHH
Q 021264 89 -PKDVPEALDNTLQDLQIDYVDLYLIHWPARMKKGSVGFNPENLLPLDIPSTWRAMEALYDSGKARAIGVCNFSTKKLGD 167 (315)
Q Consensus 89 -~~~i~~~ve~sL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~L~~lk~~GkIr~iGvS~~~~~~l~~ 167 (315)
.=-++-.-.+.-+|+.+.|+|.+. .++++.++..++.+++|+...||+-..-.+.+++
T Consensus 182 v~l~vEvd~~ri~kR~~~g~ld~~~---------------------~~ldea~~~~~ea~~~~~~~SIg~~GN~ad~~~~ 240 (546)
T PF01175_consen 182 VGLIVEVDPSRIEKRLEQGYLDEVT---------------------DDLDEALARAKEARAKKEPLSIGLLGNAADLWEE 240 (546)
T ss_dssp EEEEEES-HHHHHHHHHTTSSSEEE---------------------SSHHHHHHHHHHHHHTT--EEEEEES-HHHHHHH
T ss_pred eEEEEEECHHHHHHHHhCCCeeEEc---------------------CCHHHHHHHHHHhhccCCeeEEEEeccHHHHHHH
Confidence 000112334556788889999883 5689999999999999999999999988888888
Q ss_pred HHHhcC-CCCccccccc
Q 021264 168 LLEIAR-VPPAVNQVEC 183 (315)
Q Consensus 168 ~~~~~~-~~~~~~q~~~ 183 (315)
+++..- +++..-|.+.
T Consensus 241 l~~~~i~pDl~tDQTS~ 257 (546)
T PF01175_consen 241 LVERGIIPDLVTDQTSA 257 (546)
T ss_dssp HHHTT---SEE---SST
T ss_pred HHHcCCCCCcccCCCcc
Confidence 887532 2344456555
No 146
>PRK14462 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=36.91 E-value=2.4e+02 Score=26.44 Aligned_cols=97 Identities=15% Similarity=0.124 Sum_probs=60.2
Q ss_pred eeecCCCccCCCCCCCCCCCCCCCHHHHHHHHHHHH-hcCC---eeeEeecCC--ChhhHHHHHHhcC-CCCcccccccC
Q 021264 112 LIHWPARMKKGSVGFNPENLLPLDIPSTWRAMEALY-DSGK---ARAIGVCNF--STKKLGDLLEIAR-VPPAVNQVECH 184 (315)
Q Consensus 112 ~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~L~~lk-~~Gk---Ir~iGvS~~--~~~~l~~~~~~~~-~~~~~~q~~~n 184 (315)
-||.++...+.....-+.. .+++++++++.++. +.|+ |+++=+..+ +.++++++.+... .+..++-++||
T Consensus 225 SLha~d~e~r~~l~pv~~~---~~l~~ll~~l~~y~~~~~~~i~ieyvLI~GvNDs~e~a~~La~llk~l~~~VnLIPyn 301 (356)
T PRK14462 225 SLHAVDDELRSELMPINKA---YNIESIIDAVRKFPIDQRKRVMFEYLVIKDVNDDLKSAKKLVKLLNGIKAKVNLILFN 301 (356)
T ss_pred ECCCCCHHHHHHhCCCCcc---CCHHHHHHHHHHHHHHhCCeEEEEEEEECCCCCCHHHHHHHHHHHhhcCcEEEEEeCC
Confidence 3898877543221110011 46678899888554 4455 666666654 4677777766543 45678888888
Q ss_pred cccc------h----HHHHHHHHHcCceEEEecCCCC
Q 021264 185 SSWQ------Q----QKLHAFCKSKGVHLSGYSPLGS 211 (315)
Q Consensus 185 ~~~~------~----~~~~~~~~~~gi~v~~~~pl~~ 211 (315)
++.. . ....+..+++|+.+......+.
T Consensus 302 ~~~~~~~~~ps~e~i~~f~~~l~~~gi~vtvR~~~G~ 338 (356)
T PRK14462 302 PHEGSKFERPSLEDMIKFQDYLNSKGLLCTIRESKGL 338 (356)
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHCCCcEEEeCCCCC
Confidence 7652 1 2355567778999988877643
No 147
>PRK05283 deoxyribose-phosphate aldolase; Provisional
Probab=36.56 E-value=1.5e+02 Score=26.34 Aligned_cols=85 Identities=21% Similarity=0.184 Sum_probs=54.9
Q ss_pred ccccccCcCCcch-HHHHHHHHHHhCCcEEecCCCCC----C-H--HHHHHHHHHhhhcCCcCCCCeEEeeccCCCCCCC
Q 021264 18 SVGLGTWQADPGI-VGNAVDVAIKAGYRHIDCARLYL----N-E--KEIGFVLKKLFEDGVVKREDLWITSKLWCTDLAP 89 (315)
Q Consensus 18 ~lglG~~~~~~~~-~~~~l~~A~~~Gi~~~DtA~~Yg----s-e--~~lG~~l~~~~~~~~~~R~~~~i~tK~~~~~~~~ 89 (315)
++.+=+...++++ ...+.+.|++.|..|+-|+..|+ + | +++-+.+++. + ...+ +--|....=.+.
T Consensus 135 KVIlEt~~L~~ee~i~~a~~~a~~aGADFVKTSTGf~~~gAt~edv~lm~~~i~~~---~--~~~~--vgIKAsGGIrt~ 207 (257)
T PRK05283 135 KVIIETGELKDEALIRKASEIAIKAGADFIKTSTGKVPVNATLEAARIMLEVIRDM---G--VAKT--VGFKPAGGVRTA 207 (257)
T ss_pred EEEEeccccCCHHHHHHHHHHHHHhCCCEEEcCCCCCCCCCCHHHHHHHHHHHHhc---c--cCCC--eeEEccCCCCCH
Confidence 4444444456664 88899999999999999999996 1 2 2222333221 0 0122 444553333556
Q ss_pred CcHHHHHHHHHHhcCCCccc
Q 021264 90 KDVPEALDNTLQDLQIDYVD 109 (315)
Q Consensus 90 ~~i~~~ve~sL~~Lg~d~iD 109 (315)
+....-++.--+.||.++++
T Consensus 208 ~~A~~~i~ag~~~lg~~~~~ 227 (257)
T PRK05283 208 EDAAQYLALADEILGADWAD 227 (257)
T ss_pred HHHHHHHHHHHHHhChhhcC
Confidence 77888888888999988776
No 148
>COG0646 MetH Methionine synthase I (cobalamin-dependent), methyltransferase domain [Amino acid transport and metabolism]
Probab=36.15 E-value=3.4e+02 Score=24.77 Aligned_cols=218 Identities=15% Similarity=0.171 Sum_probs=112.3
Q ss_pred CCcchHHHHHHHHHHhCCcEEecCCC---------CCCHH----HH--HHHHHHhhhcCCcCCCCeEEeeccCCCC----
Q 021264 26 ADPGIVGNAVDVAIKAGYRHIDCARL---------YLNEK----EI--GFVLKKLFEDGVVKREDLWITSKLWCTD---- 86 (315)
Q Consensus 26 ~~~~~~~~~l~~A~~~Gi~~~DtA~~---------Ygse~----~l--G~~l~~~~~~~~~~R~~~~i~tK~~~~~---- 86 (315)
+.++.+.++=+..+++|-..+.|=.. |+-|. +- |..|.+..+++...+.+.||+.-+|+..
T Consensus 50 T~Pd~I~~IH~aY~eAGADiIeTNTFgat~i~lady~led~v~~in~~aa~iAR~aA~~~~~~k~rfVaGsiGPt~k~~~ 129 (311)
T COG0646 50 TKPDVIEAIHRAYIEAGADIIETNTFGATTIKLADYGLEDKVYEINQKAARIARRAADEAGDPKPRFVAGSIGPTNKTLS 129 (311)
T ss_pred CCcHHHHHHHHHHHhccCcEEEecCCCcchhhHhhhChHHHHHHHHHHHHHHHHHHHhhcCCCCceEEEEeccCcCCcCC
Confidence 34455656666677999999998543 33121 11 1112222211111225788888877632
Q ss_pred ------CCCCcHHHHHHHHHHhcCCCccceEeeecCCCccCCCCCCCCCCCCCCCHHHHHHHHHHHHhcCCee-----eE
Q 021264 87 ------LAPKDVPEALDNTLQDLQIDYVDLYLIHWPARMKKGSVGFNPENLLPLDIPSTWRAMEALYDSGKAR-----AI 155 (315)
Q Consensus 87 ------~~~~~i~~~ve~sL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~L~~lk~~GkIr-----~i 155 (315)
.+.+.++.+..+..+-|=-.=+|++++...... .....++.+.++..++.-++ +.
T Consensus 130 ~~~~~~v~fd~l~~ay~eq~~~Li~gG~D~iLiET~~D~--------------l~~KaA~~a~~~~~~~~~~~LPv~~s~ 195 (311)
T COG0646 130 ISPDFAVTFDELVEAYREQVEGLIDGGADLILIETIFDT--------------LNAKAAVFAAREVFEELGVRLPVMISG 195 (311)
T ss_pred cCCcccccHHHHHHHHHHHHHHHHhCCCcEEEEehhccH--------------HHHHHHHHHHHHHHHhcCCcccEEEEE
Confidence 335678888888888887778999999865432 23455666666666543333 11
Q ss_pred eecCC----ChhhHHHHHHhc-CCCCcccccccCcccch-HHHHH-HHHHcCceEEEecCCCCCCCCCCccccCCchHHH
Q 021264 156 GVCNF----STKKLGDLLEIA-RVPPAVNQVECHSSWQQ-QKLHA-FCKSKGVHLSGYSPLGSPGTRWIKSDVLRHPVLK 228 (315)
Q Consensus 156 GvS~~----~~~~l~~~~~~~-~~~~~~~q~~~n~~~~~-~~~~~-~~~~~gi~v~~~~pl~~gg~~~~~~~~~~~~~l~ 228 (315)
-+..- +...+..++... ...++++=+++..---. .+.++ ..+..+..|.+| |-++ +- .....+
T Consensus 196 Ti~~sG~tl~Gq~~~a~~~~l~~~~~~~vGlNCa~Gp~~m~~~l~~ls~~~~~~vs~~-PNAG--LP----~~~g~~--- 265 (311)
T COG0646 196 TITDSGRTLSGQTIEAFLNSLEHLGPDAVGLNCALGPDEMRPHLRELSRIADAFVSVY-PNAG--LP----NAFGER--- 265 (311)
T ss_pred EEecCceecCCCcHHHHHHHhhccCCcEEeeccccCHHHHHHHHHHHHhccCceEEEe-CCCC--CC----cccCCc---
Confidence 11110 112333333322 23456666665433211 33333 344445555555 6543 21 111100
Q ss_pred HHHHHhCCCH---HHHHHHHHhhcCCeeecCC--CCHHHHHHhhccc
Q 021264 229 TAAEKLGKTP---AQVALRWGLQMGHSVLPKS--TNEARIKENFDIF 270 (315)
Q Consensus 229 ~la~~~~~s~---aq~al~~~l~~~~~~i~G~--~~~~~l~~nl~a~ 270 (315)
..|..+| ++....|+..-.+-+|=|| ++|+|++...++.
T Consensus 266 ---~~Y~~~p~~~a~~~~~f~~~g~vnIvGGCCGTTPeHIraia~~v 309 (311)
T COG0646 266 ---AVYDLTPEYMAEALAEFAEEGGVNIVGGCCGTTPEHIRAIAEAV 309 (311)
T ss_pred ---cccCCCHHHHHHHHHHHHHhCCceeeccccCCCHHHHHHHHHHh
Confidence 0133444 3333345555336666565 9999999877654
No 149
>PF02276 CytoC_RC: Photosynthetic reaction centre cytochrome C subunit; InterPro: IPR003158 The photosynthetic apparatus in non-oxygenic bacteria consists of light-harvesting (LH) protein-pigment complexes LH1 and LH2, which use carotenoid and bacteriochlorophyll as primary donors []. LH1 acts as the energy collection hub, temporarily storing it before its transfer to the photosynthetic reaction centre (RC) []. Electrons are transferred from the primary donor via an intermediate acceptor (bacteriopheophytin) to the primary acceptor (quinine Qa), and finally to the secondary acceptor (quinone Qb), resulting in the formation of ubiquinol QbH2. RC uses the excitation energy to shuffle electrons across the membrane, transferring them via ubiquinol to the cytochrome bc1 complex in order to establish a proton gradient across the membrane, which is used by ATP synthetase to form ATP [, , ]. The core complex is anchored in the cell membrane, consisting of one unit of RC surrounded by LH1; in some species there may be additional subunits []. RC consists of three subunits: L (light), M (medium), and H (heavy). Subunits L and M provide the scaffolding for the chromophore, while subunit H contains a cytoplasmic domain []. In Rhodopseudomonas viridis, there is also a non-membranous tetrahaem cytochrome (4Hcyt) subunit on the periplasmic surface. In the purple bacterium Rhodocyclus gelatinosus (Rhodopseudomonas gelatinosa), a high potential Fe-S protein (HiPIP) acts as an electron donor to reaction centre-bound cyt bc1 under anaerobic conditions in the light, while cyt c acts as a soluble electron carrier under aerobic conditions in the dark in order to re-reduce the oxidized electron donor [].; GO: 0005506 iron ion binding, 0009055 electron carrier activity, 0020037 heme binding, 0019684 photosynthesis, light reaction, 0030077 plasma membrane light-harvesting complex; PDB: 7PRC_C 6PRC_C 2X5V_C 2X5U_C 2WJM_C 2JBL_C 3T6D_C 3D38_C 2WJN_C 1VRN_C ....
Probab=36.01 E-value=34 Score=31.04 Aligned_cols=48 Identities=17% Similarity=0.276 Sum_probs=33.7
Q ss_pred eeecCCCCHHHHHHhhcccCcccCHHHHHHHHhchhhhh--cccccccccC
Q 021264 252 SVLPKSTNEARIKENFDIFDWSISEDLFVKFSEIEQARL--IRGTAYVHDT 300 (315)
Q Consensus 252 ~~i~G~~~~~~l~~nl~a~~~~Lt~e~~~~l~~~~~~~~--~~g~~~~~~~ 300 (315)
.+-+|.....++-+|+.++ ..|+.+++..|=.....-. ..||.||+.+
T Consensus 42 ~~~~~g~~A~e~ykNv~VL-~dls~~ef~rlM~amt~wvgP~~gC~yCH~~ 91 (314)
T PF02276_consen 42 PAPPGGPKAGEVYKNVKVL-GDLSVAEFDRLMAAMTAWVGPEVGCNYCHNP 91 (314)
T ss_dssp -----SSBHHHHSSS-SSS-TTSBHHHHHHHHHHHHHHH-TTTGGGGTSBT
T ss_pred CCCCCCCcHHHHHhcchhh-cCCCHHHHHHHHHHHHHHhCCCcccccccCc
Confidence 4456889999999999988 6899999887665544323 4789999976
No 150
>TIGR00126 deoC deoxyribose-phosphate aldolase. Deoxyribose-phosphate aldolase is involved in the catabolism of nucleotides and deoxyriibonucleotides. The catalytic process is as follows: 2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde. It is found in both gram-postive and gram-negative bacteria.
Probab=35.64 E-value=1.3e+02 Score=25.78 Aligned_cols=79 Identities=10% Similarity=0.092 Sum_probs=49.7
Q ss_pred cccCcCCcchHHHHHHHHHHhCCcEEecCCCCC-CHHHHH--HHHHHhhhcCCcCCCCeEEeeccCCCCCCCCcHHHHHH
Q 021264 21 LGTWQADPGIVGNAVDVAIKAGYRHIDCARLYL-NEKEIG--FVLKKLFEDGVVKREDLWITSKLWCTDLAPKDVPEALD 97 (315)
Q Consensus 21 lG~~~~~~~~~~~~l~~A~~~Gi~~~DtA~~Yg-se~~lG--~~l~~~~~~~~~~R~~~~i~tK~~~~~~~~~~i~~~ve 97 (315)
+-+...+.++.....+.|.+.|..++-|+..|+ ....++ +.+++.+ +++ +-.|....-.+.+...+.++
T Consensus 124 lE~~~L~~~ei~~a~~ia~eaGADfvKTsTGf~~~gat~~dv~~m~~~v------~~~--v~IKaaGGirt~~~a~~~i~ 195 (211)
T TIGR00126 124 IETGLLTDEEIRKACEICIDAGADFVKTSTGFGAGGATVEDVRLMRNTV------GDT--IGVKASGGVRTAEDAIAMIE 195 (211)
T ss_pred EecCCCCHHHHHHHHHHHHHhCCCEEEeCCCCCCCCCCHHHHHHHHHHh------ccC--CeEEEeCCCCCHHHHHHHHH
Confidence 434345667888999999999999999999886 212222 2344431 222 23333222225667777888
Q ss_pred HHHHhcCCCc
Q 021264 98 NTLQDLQIDY 107 (315)
Q Consensus 98 ~sL~~Lg~d~ 107 (315)
.--.|+|++.
T Consensus 196 aGa~riGts~ 205 (211)
T TIGR00126 196 AGASRIGASA 205 (211)
T ss_pred HhhHHhCcch
Confidence 8888999864
No 151
>TIGR02931 anfK_nitrog Fe-only nitrogenase, beta subunit. Nitrogenase is the enzyme of biological nitrogen fixation. The most wide-spread and most efficient nitrogenase contains a molybdenum cofactor. This protein family, AnfK, represents the beta subunit of the iron-only alternative nitrogenase. It is homologous to NifK and VnfK, of the molybdenum-containing and the vanadium (V)-containing types, respectively.
Probab=35.63 E-value=4.2e+02 Score=25.68 Aligned_cols=113 Identities=16% Similarity=0.099 Sum_probs=62.5
Q ss_pred CCCCHHHHHHHHHHhhhcCCcCCCCe-EEeeccCCCCCCCCcHHHHHHHHHHhcC---C--CccceEeeecCCCccCCCC
Q 021264 51 LYLNEKEIGFVLKKLFEDGVVKREDL-WITSKLWCTDLAPKDVPEALDNTLQDLQ---I--DYVDLYLIHWPARMKKGSV 124 (315)
Q Consensus 51 ~Ygse~~lG~~l~~~~~~~~~~R~~~-~i~tK~~~~~~~~~~i~~~ve~sL~~Lg---~--d~iDl~~lH~p~~~~~~~~ 124 (315)
.||.++.|-++|++..++. ++.++ +|.|-. ....--+.+..-+++.-++++ . ..+.++.+|.|+......
T Consensus 73 VfGg~~~L~~ai~~~~~~~--~~p~~i~v~ttc-~~eiiGDDi~~v~~~~~~~~~~~~~p~~~~~ii~v~tpgF~gs~~- 148 (461)
T TIGR02931 73 VFGALDRVEEAVDVLLTRY--PDVKVVPIITTC-STEIIGDDVDGLISKLNEELLKEKFPDREVHLIPIHTPSFVGSMI- 148 (461)
T ss_pred EECcHHHHHHHHHHHHHhc--CCCCEEEEECCc-hHHhhhcCHHHHHHHHHhhhcccccCCCCCeEEEeeCCCCCCcHH-
Confidence 4788888888988765443 43444 455544 234444556666666655552 1 136789999888753110
Q ss_pred CCCCCCCCCCCHHHHHHHHH-HHH----hcCCeeeEeecC--CChhhHHHHHHhcCCCC
Q 021264 125 GFNPENLLPLDIPSTWRAME-ALY----DSGKARAIGVCN--FSTKKLGDLLEIARVPP 176 (315)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~L~-~lk----~~GkIr~iGvS~--~~~~~l~~~~~~~~~~~ 176 (315)
......+++|- .+. .+++|--||-.. -+.+.+.++++..++.+
T Consensus 149 ---------~Gy~~a~~ali~~~~~~~~~~~~VNlig~~~~~~D~~elk~lL~~~Gl~v 198 (461)
T TIGR02931 149 ---------TGYDVAVHDFVKHFAKKDKPNDKINLITGWVNPGDVKELKHLLEEMDIEA 198 (461)
T ss_pred ---------HHHHHHHHHHHHHHccCCCCCCcEEEECCCCChhhHHHHHHHHHHcCCce
Confidence 11223333333 222 246788888543 23456666777666543
No 152
>PF10171 DUF2366: Uncharacterised conserved protein (DUF2366); InterPro: IPR019322 This is a set of proteins conserved from nematodes to humans. The function is not known.
Probab=35.47 E-value=81 Score=26.25 Aligned_cols=52 Identities=19% Similarity=0.272 Sum_probs=39.0
Q ss_pred HHHHHHHHHhcCCCccceEeeecCCCccCCCCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeeEeecCCC
Q 021264 93 PEALDNTLQDLQIDYVDLYLIHWPARMKKGSVGFNPENLLPLDIPSTWRAMEALYDSGKARAIGVCNFS 161 (315)
Q Consensus 93 ~~~ve~sL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~L~~lk~~GkIr~iGvS~~~ 161 (315)
+.+++++|..-. -+|++++...+. ....+.+..|+.+..+|++|++-+.-++
T Consensus 66 e~~f~~~L~e~s---n~l~lv~~~~rN--------------p~S~~hvq~l~~l~nqg~Lr~~nLG~~S 117 (173)
T PF10171_consen 66 EQSFEDALLEAS---NDLLLVSPAIRN--------------PTSDKHVQRLMRLRNQGRLRYLNLGLFS 117 (173)
T ss_pred HHHHHHHHHHHh---CceeccChhhcC--------------chHHHHHHHHHHHhcCCceEEeeeeeEE
Confidence 577777777664 678888755443 3356789999999999999988766665
No 153
>COG2949 SanA Uncharacterized membrane protein [Function unknown]
Probab=35.30 E-value=1.6e+02 Score=25.35 Aligned_cols=74 Identities=16% Similarity=0.157 Sum_probs=48.3
Q ss_pred HHHHHHHHHHHHhcCCeeeEeecCCC-------hhhHHHHHHhcCCCCcccccccCcc---------------------c
Q 021264 136 IPSTWRAMEALYDSGKARAIGVCNFS-------TKKLGDLLEIARVPPAVNQVECHSS---------------------W 187 (315)
Q Consensus 136 ~~~~~~~L~~lk~~GkIr~iGvS~~~-------~~~l~~~~~~~~~~~~~~q~~~n~~---------------------~ 187 (315)
...=+++..+|.++|||+++=+|.-+ +..|.+-+...+++...+-..|--+ .
T Consensus 78 y~~Ri~aA~~ly~~gKV~~LLlSGDN~~~sYnEp~tM~kdL~~~GVp~~~i~lDyAGFrTLDSvvRA~kVF~~~~ftIIt 157 (235)
T COG2949 78 YTYRIDAAIALYKAGKVNYLLLSGDNATVSYNEPRTMRKDLIAAGVPAKNIFLDYAGFRTLDSVVRARKVFGTNDFTIIT 157 (235)
T ss_pred HHHHHHHHHHHHhcCCeeEEEEecCCCcccccchHHHHHHHHHcCCCHHHeeecccCccHHHHHHHHHHHcCcCcEEEEe
Confidence 34557888999999999999998854 4556665555555544444444222 1
Q ss_pred ch---HHHHHHHHHcCceEEEecCC
Q 021264 188 QQ---QKLHAFCKSKGVHLSGYSPL 209 (315)
Q Consensus 188 ~~---~~~~~~~~~~gi~v~~~~pl 209 (315)
|. +..+=.|+.+||.-+++..-
T Consensus 158 Q~FHceRAlfiA~~~gIdAic~~ap 182 (235)
T COG2949 158 QRFHCERALFIARQMGIDAICFAAP 182 (235)
T ss_pred cccccHHHHHHHHHhCCceEEecCC
Confidence 11 45566788888888877554
No 154
>PLN02540 methylenetetrahydrofolate reductase
Probab=35.14 E-value=4.8e+02 Score=26.18 Aligned_cols=161 Identities=13% Similarity=0.117 Sum_probs=79.9
Q ss_pred chHHHHHHHHHHhCCcEEecCCCCC---CHHHHHHHHHHhhhcCCcCCC-CeEEeeccCCCCCCCCcHHHHHHHHHHhcC
Q 021264 29 GIVGNAVDVAIKAGYRHIDCARLYL---NEKEIGFVLKKLFEDGVVKRE-DLWITSKLWCTDLAPKDVPEALDNTLQDLQ 104 (315)
Q Consensus 29 ~~~~~~l~~A~~~Gi~~~DtA~~Yg---se~~lG~~l~~~~~~~~~~R~-~~~i~tK~~~~~~~~~~i~~~ve~sL~~Lg 104 (315)
+...+.+++..+.|-.|+|.+..=| ++..+.-+..- .++ .+-.+-.+.+.+.+...+...+++. +.+|
T Consensus 15 ~nL~~~~~rl~~~~P~FisVT~gAgGst~~~Tl~la~~l-------q~~~Gie~i~HLTCrd~n~~~L~~~L~~a-~~~G 86 (565)
T PLN02540 15 DNLFERMDRMVAHGPLFCDITWGAGGSTADLTLDIANRM-------QNMICVETMMHLTCTNMPVEKIDHALETI-KSNG 86 (565)
T ss_pred HHHHHHHHHHhccCCCEEEeCCCCCCCcHHHHHHHHHHH-------HHhcCCCeeEEeeecCCCHHHHHHHHHHH-HHCC
Confidence 3345566777788999999986655 35554433221 111 2333444444455555555555544 6777
Q ss_pred CCccceEeeecCCCccCCCCCCCCCCCCCCCHHHHHHHHHHHHhc-CCeeeEeecCCCh------------------hhH
Q 021264 105 IDYVDLYLIHWPARMKKGSVGFNPENLLPLDIPSTWRAMEALYDS-GKARAIGVCNFST------------------KKL 165 (315)
Q Consensus 105 ~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~L~~lk~~-GkIr~iGvS~~~~------------------~~l 165 (315)
+. .++.|-. |+...++. +.... .......+.++.+++. |..-.|||+.+.. ..+
T Consensus 87 Ir--NILALrG-Dpp~~~d~-~~~~~---g~F~~A~dLV~~Ir~~~gd~f~IgVAGYPEgHpe~~~~~~~~~~~~~~~dl 159 (565)
T PLN02540 87 IQ--NILALRG-DPPHGQDK-FVQVE---GGFACALDLVKHIRSKYGDYFGITVAGYPEAHPDVIGGDGLATPEAYQKDL 159 (565)
T ss_pred CC--EEEEECC-CCCCCCCC-cCCCC---CCcccHHHHHHHHHHhCCCCceEEEeCCCCCCCcccccccccCCCChHHHH
Confidence 54 4555543 22111110 00000 1112244445555544 4455788886642 234
Q ss_pred HHHHHhc--CCCCcccccccCcccchHHHHHHHHHcC--ceEEE
Q 021264 166 GDLLEIA--RVPPAVNQVECHSSWQQQKLHAFCKSKG--VHLSG 205 (315)
Q Consensus 166 ~~~~~~~--~~~~~~~q~~~n~~~~~~~~~~~~~~~g--i~v~~ 205 (315)
..+.+.. +..+.+-|.-|..- .-...++.|++.| ++|++
T Consensus 160 ~~Lk~KvdAGAdFiITQlfFD~d-~f~~f~~~~r~~Gi~vPIip 202 (565)
T PLN02540 160 AYLKEKVDAGADLIITQLFYDTD-IFLKFVNDCRQIGITCPIVP 202 (565)
T ss_pred HHHHHHHHcCCCEEeeccccCHH-HHHHHHHHHHhcCCCCCEEe
Confidence 4444332 34444555544321 1156788899998 55555
No 155
>PRK06015 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=35.03 E-value=1.2e+02 Score=25.99 Aligned_cols=61 Identities=16% Similarity=0.189 Sum_probs=40.1
Q ss_pred HHHHHHHHHHhcCCeeeEeecCC-ChhhHHHHHHhcCCCCcccccccCcccchHHHHHHHHHcCceEEE
Q 021264 138 STWRAMEALYDSGKARAIGVCNF-STKKLGDLLEIARVPPAVNQVECHSSWQQQKLHAFCKSKGVHLSG 205 (315)
Q Consensus 138 ~~~~~L~~lk~~GkIr~iGvS~~-~~~~l~~~~~~~~~~~~~~q~~~n~~~~~~~~~~~~~~~gi~v~~ 205 (315)
+.++.+++++++..=-.||..+. +.++++++++... ++-.++. -+.+++++|+++|+.+++
T Consensus 41 ~a~~~I~~l~~~~~~~~vGAGTVl~~e~a~~ai~aGA------~FivSP~-~~~~vi~~a~~~~i~~iP 102 (201)
T PRK06015 41 AALDAIRAVAAEVEEAIVGAGTILNAKQFEDAAKAGS------RFIVSPG-TTQELLAAANDSDVPLLP 102 (201)
T ss_pred cHHHHHHHHHHHCCCCEEeeEeCcCHHHHHHHHHcCC------CEEECCC-CCHHHHHHHHHcCCCEeC
Confidence 35566666665533235888774 6788888877432 2223332 247999999999998887
No 156
>COG0821 gcpE 1-hydroxy-2-methyl-2-(e)-butenyl 4-diphosphate synthase [Lipid metabolism]
Probab=34.71 E-value=3.8e+02 Score=24.90 Aligned_cols=71 Identities=10% Similarity=-0.007 Sum_probs=46.4
Q ss_pred CHHHHHHHHHHHHhcCCeeeEeecCCChhhHHHHHHhcCCCCcccccccCcccchHHHHHHHHHcCceEEE
Q 021264 135 DIPSTWRAMEALYDSGKARAIGVCNFSTKKLGDLLEIARVPPAVNQVECHSSWQQQKLHAFCKSKGVHLSG 205 (315)
Q Consensus 135 ~~~~~~~~L~~lk~~GkIr~iGvS~~~~~~l~~~~~~~~~~~~~~q~~~n~~~~~~~~~~~~~~~gi~v~~ 205 (315)
+..+..+++.+++++=.|--++==.|+...+.+..+.+--+..+|.-++..-.+-.++++.|+++|+++=.
T Consensus 58 ~~~e~A~A~~~Ik~~~~vPLVaDiHf~~rla~~~~~~g~~k~RINPGNig~~~~v~~vVe~Ak~~g~piRI 128 (361)
T COG0821 58 PDMEAAEALKEIKQRLNVPLVADIHFDYRLALEAAECGVDKVRINPGNIGFKDRVREVVEAAKDKGIPIRI 128 (361)
T ss_pred CCHHHHHHHHHHHHhCCCCEEEEeeccHHHHHHhhhcCcceEEECCcccCcHHHHHHHHHHHHHcCCCEEE
Confidence 34567889999999888777775556655555555543223344444444333347899999999998743
No 157
>KOG1549 consensus Cysteine desulfurase NFS1 [Amino acid transport and metabolism]
Probab=34.49 E-value=4.3e+02 Score=25.43 Aligned_cols=70 Identities=16% Similarity=0.151 Sum_probs=41.1
Q ss_pred HHHHHHHHHhcCC-eeeEeecCCChhhHHHHHHhcCCC-----CcccccccCcccchHHHHHHHHHcCceEEEecC
Q 021264 139 TWRAMEALYDSGK-ARAIGVCNFSTKKLGDLLEIARVP-----PAVNQVECHSSWQQQKLHAFCKSKGVHLSGYSP 208 (315)
Q Consensus 139 ~~~~L~~lk~~Gk-Ir~iGvS~~~~~~l~~~~~~~~~~-----~~~~q~~~n~~~~~~~~~~~~~~~gi~v~~~~p 208 (315)
+.+..+.|+++|. ++++.+.+-....++++.+..+.+ ++.+........+-+++...|++.||.|+.=..
T Consensus 144 v~~s~~~l~~~g~~Vt~lpv~~~~~~d~~~~~~~i~~~T~lv~I~~Vnn~~gv~~Pv~EI~~icr~~~v~v~~DaA 219 (428)
T KOG1549|consen 144 VLDSCRALQEEGLEVTYLPVEDSGLVDISKLREAIRSKTRLVSIMHVNNEIGVLQPVKEIVKICREEGVQVHVDAA 219 (428)
T ss_pred hhHHHHHHHhcCeEEEEeccCccccccHHHHHHhcCCCceEEEEEecccCccccccHHHHHHHhCcCCcEEEeehh
Confidence 4566667777774 667787765555555555543322 223333333333447888888888886665333
No 158
>TIGR00737 nifR3_yhdG putative TIM-barrel protein, nifR3 family. Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase.
Probab=34.39 E-value=3.6e+02 Score=24.52 Aligned_cols=136 Identities=18% Similarity=0.197 Sum_probs=77.1
Q ss_pred cCCcchHHHHHHHHHHhCCcEEecC---------CCC-CC-----HHHHHHHHHHhhhcCCcCCCCeEEeeccCC-CCCC
Q 021264 25 QADPGIVGNAVDVAIKAGYRHIDCA---------RLY-LN-----EKEIGFVLKKLFEDGVVKREDLWITSKLWC-TDLA 88 (315)
Q Consensus 25 ~~~~~~~~~~l~~A~~~Gi~~~DtA---------~~Y-gs-----e~~lG~~l~~~~~~~~~~R~~~~i~tK~~~-~~~~ 88 (315)
..++++..+..+.+.+.|+..+|.- ..| |+ .+.+.+.++..- .+-++-|+.|+.. .+.+
T Consensus 71 g~~~~~~~~aa~~~~~~G~d~IelN~gcP~~~~~~~~~Gs~l~~~~~~~~ei~~~vr-----~~~~~pv~vKir~g~~~~ 145 (319)
T TIGR00737 71 GSDPDTMAEAAKINEELGADIIDINMGCPVPKITKKGAGSALLRDPDLIGKIVKAVV-----DAVDIPVTVKIRIGWDDA 145 (319)
T ss_pred CCCHHHHHHHHHHHHhCCCCEEEEECCCCHHHhcCCCccchHhCCHHHHHHHHHHHH-----hhcCCCEEEEEEcccCCC
Confidence 3467788888888889999988862 123 32 244445554431 1113557777632 1111
Q ss_pred CCcHHHHHHHHHHhcCCCccceEeeecCCCccCCCCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeeEeecCC-ChhhHHH
Q 021264 89 PKDVPEALDNTLQDLQIDYVDLYLIHWPARMKKGSVGFNPENLLPLDIPSTWRAMEALYDSGKARAIGVCNF-STKKLGD 167 (315)
Q Consensus 89 ~~~i~~~ve~sL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~L~~lk~~GkIr~iGvS~~-~~~~l~~ 167 (315)
... ...+-+.|+..|+ |.+.+|..... .. ......|+.+.++++.=.|--||.... +++++.+
T Consensus 146 ~~~-~~~~a~~l~~~G~---d~i~vh~r~~~-~~-----------~~~~~~~~~i~~i~~~~~ipvi~nGgI~~~~da~~ 209 (319)
T TIGR00737 146 HIN-AVEAARIAEDAGA---QAVTLHGRTRA-QG-----------YSGEANWDIIARVKQAVRIPVIGNGDIFSPEDAKA 209 (319)
T ss_pred cch-HHHHHHHHHHhCC---CEEEEEccccc-cc-----------CCCchhHHHHHHHHHcCCCcEEEeCCCCCHHHHHH
Confidence 111 2345556777774 56667853321 01 111234788888887766777776664 5678888
Q ss_pred HHHhcCCCCccccccc
Q 021264 168 LLEIARVPPAVNQVEC 183 (315)
Q Consensus 168 ~~~~~~~~~~~~q~~~ 183 (315)
+++..+. +.+++--
T Consensus 210 ~l~~~ga--d~VmigR 223 (319)
T TIGR00737 210 MLETTGC--DGVMIGR 223 (319)
T ss_pred HHHhhCC--CEEEECh
Confidence 8765443 5555543
No 159
>TIGR01163 rpe ribulose-phosphate 3-epimerase. This family consists of Ribulose-phosphate 3-epimerase, also known as pentose-5-phosphate 3-epimerase (PPE). PPE converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. It has been found in a wide range of bacteria, archebacteria, fungi and plants.
Probab=34.36 E-value=2.1e+02 Score=23.82 Aligned_cols=63 Identities=13% Similarity=0.040 Sum_probs=35.0
Q ss_pred HHHHHHHHHhcC--CeeeEeecCCChhhHHHHHHhcCCCCcccccccCcccchHHHHHHHHHcCceEE
Q 021264 139 TWRAMEALYDSG--KARAIGVCNFSTKKLGDLLEIARVPPAVNQVECHSSWQQQKLHAFCKSKGVHLS 204 (315)
Q Consensus 139 ~~~~L~~lk~~G--kIr~iGvS~~~~~~l~~~~~~~~~~~~~~q~~~n~~~~~~~~~~~~~~~gi~v~ 204 (315)
.++.++++++.. .+. +++-..+.....+.+.. ...+.+|++..........++.++++|+.+.
T Consensus 44 ~~~~v~~i~~~~~~~v~-v~lm~~~~~~~~~~~~~--~gadgv~vh~~~~~~~~~~~~~~~~~g~~~~ 108 (210)
T TIGR01163 44 GPPVLEALRKYTDLPID-VHLMVENPDRYIEDFAE--AGADIITVHPEASEHIHRLLQLIKDLGAKAG 108 (210)
T ss_pred CHHHHHHHHhcCCCcEE-EEeeeCCHHHHHHHHHH--cCCCEEEEccCCchhHHHHHHHHHHcCCcEE
Confidence 455666666543 333 66666665544333333 3346777766543333566777777776643
No 160
>PF00809 Pterin_bind: Pterin binding enzyme This Prosite entry is a subset of the Pfam family; InterPro: IPR000489 The ~250-residue pterin-binding domain has been shown to adopt a (beta/alpha)8 barrel fold, which has the overall shape of a distorted cylinder. It has eight alpha-helices stacked around the outside of an inner cylinder of parallel beta-strands. The pterin ring binds at the bottom of the (beta/alpha;)8 barrel in a polar cup-like region that is relatively solvent exposed and fairly negatively charged. The pterin ring is partially buried within the (beta/alpha)8 barrel. The pterin binding residues are highly conserved and include aspartate and asparagine residues located at the C terminus of the beta-strands of the barrel, which are predicted to form hydrogen bonds with the nitrogen and oxygen atoms of the pterin ring [, , ]. Some proteins known to contain a pterin-binding domain are listed below: Prokaryotic and eukaryotic B12-dependent methionine synthase (MetH) (2.1.1.13 from EC), a large, modular protein that catalyzes the transfer of a methyl group from methyltetrahydrofolate (CH3-H4folate) to Hcy to form methionine, using cobalamin as an intermediate methyl carrier. Prokaryotic and eukaryotic dihydropteroate synthase (DHPS) (2.5.1.15 from EC). It catalyzes the condensation of para-aminobenzoic acid (pABA) with 7,8- dihydropterin-pyrophosphate (DHPPP), eliminating pyrophosphate to form 7,8- dihydropteroate which is subsequently converted to tetrahydrofolate. Moorella thermoacetica 5-methyltetrahydrofolate corrinoid/iron sulphur protein methyltransferase (MeTr). It transfers the N5-methyl group from CH3-H4folate to a cob(I)amide centre in another protein, the corrinoid iron sulphur protein. ; GO: 0042558 pteridine-containing compound metabolic process; PDB: 2VP8_B 2BMB_A 2Y5S_B 2Y5J_A 3BOF_B 1Q7Q_B 1Q85_B 1Q7Z_A 1Q7M_A 1Q8A_B ....
Probab=34.31 E-value=1.6e+02 Score=25.01 Aligned_cols=67 Identities=6% Similarity=0.047 Sum_probs=47.4
Q ss_pred HHHHHHHHHHHh--cCCeeeEeecCCChhhHHHHHHhcCCCCcccccccCcccchHHHHHHHHHcCceEEEecCC
Q 021264 137 PSTWRAMEALYD--SGKARAIGVCNFSTKKLGDLLEIARVPPAVNQVECHSSWQQQKLHAFCKSKGVHLSGYSPL 209 (315)
Q Consensus 137 ~~~~~~L~~lk~--~GkIr~iGvS~~~~~~l~~~~~~~~~~~~~~q~~~n~~~~~~~~~~~~~~~gi~v~~~~pl 209 (315)
..+...++.+++ .+. -+.+-+++++.++++++. +.++..+...+.. .+++++.+++++..++++..-
T Consensus 57 ~rl~~~l~~i~~~~~~~--plSIDT~~~~v~~~aL~~-g~~~ind~~~~~~---~~~~~~l~a~~~~~vV~m~~~ 125 (210)
T PF00809_consen 57 ERLVPVLQAIREENPDV--PLSIDTFNPEVAEAALKA-GADIINDISGFED---DPEMLPLAAEYGAPVVLMHSD 125 (210)
T ss_dssp HHHHHHHHHHHHHHTTS--EEEEEESSHHHHHHHHHH-TSSEEEETTTTSS---STTHHHHHHHHTSEEEEESES
T ss_pred HHHHHHHHHHhccCCCe--EEEEECCCHHHHHHHHHc-CcceEEecccccc---cchhhhhhhcCCCEEEEEecc
Confidence 345566666665 344 488999999999999997 5543333333222 568999999999999998655
No 161
>PRK01018 50S ribosomal protein L30e; Reviewed
Probab=34.25 E-value=1.4e+02 Score=22.12 Aligned_cols=61 Identities=16% Similarity=0.341 Sum_probs=39.2
Q ss_pred HHHHHHHHHhcCCeeeEeecCCChhhHHHHHHhcCCCCcccccccCcccchHHHHHHHHHcCceEEEe
Q 021264 139 TWRAMEALYDSGKARAIGVCNFSTKKLGDLLEIARVPPAVNQVECHSSWQQQKLHAFCKSKGVHLSGY 206 (315)
Q Consensus 139 ~~~~L~~lk~~GkIr~iGvS~~~~~~l~~~~~~~~~~~~~~q~~~n~~~~~~~~~~~~~~~gi~v~~~ 206 (315)
+-.+|+..++.|++. .| ..+..+.+........++-..... .....+..+|++++|+++.|
T Consensus 4 ~~~~l~~a~ragkl~-~G-----~~~v~kai~~gkaklViiA~D~~~-~~~~~i~~~c~~~~Ip~~~~ 64 (99)
T PRK01018 4 FNRELRVAVDTGKVI-LG-----SKRTIKAIKLGKAKLVIVASNCPK-DIKEDIEYYAKLSGIPVYEY 64 (99)
T ss_pred HHHHHHHHHHcCCEE-Ec-----HHHHHHHHHcCCceEEEEeCCCCH-HHHHHHHHHHHHcCCCEEEE
Confidence 455688888888874 44 345555656555544444444322 22367889999999998776
No 162
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=33.66 E-value=2.8e+02 Score=25.83 Aligned_cols=121 Identities=15% Similarity=0.104 Sum_probs=69.3
Q ss_pred CCcchHHHHHHHHHHh---CCcEEecCCCCCCHHHHHHHHHHhhhcCCcCCCCeEEeeccCCC--CCCCCcHHHHHHHHH
Q 021264 26 ADPGIVGNAVDVAIKA---GYRHIDCARLYLNEKEIGFVLKKLFEDGVVKREDLWITSKLWCT--DLAPKDVPEALDNTL 100 (315)
Q Consensus 26 ~~~~~~~~~l~~A~~~---Gi~~~DtA~~Ygse~~lG~~l~~~~~~~~~~R~~~~i~tK~~~~--~~~~~~i~~~ve~sL 100 (315)
.+.++..+++....+. =+-++|..+..++- -..+.+.. + .++-++|.+|+--- ....+.+.+.+.+.+
T Consensus 48 ~~~e~f~~~l~~~~~~~~~Il~VvD~~d~~~s~---~~~l~~~~--~--~~piilV~NK~DLl~k~~~~~~~~~~l~~~~ 120 (360)
T TIGR03597 48 LNDDDFLNLLNSLGDSNALIVYVVDIFDFEGSL---IPELKRFV--G--GNPVLLVGNKIDLLPKSVNLSKIKEWMKKRA 120 (360)
T ss_pred CCHHHHHHHHhhcccCCcEEEEEEECcCCCCCc---cHHHHHHh--C--CCCEEEEEEchhhCCCCCCHHHHHHHHHHHH
Confidence 3445566666655432 23457865555430 01222221 1 35568899998421 112234455555566
Q ss_pred HhcCCCccceEeeecCCCccCCCCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeeEeecCCChhhHHHH
Q 021264 101 QDLQIDYVDLYLIHWPARMKKGSVGFNPENLLPLDIPSTWRAMEALYDSGKARAIGVCNFSTKKLGDL 168 (315)
Q Consensus 101 ~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~L~~lk~~GkIr~iGvS~~~~~~l~~~ 168 (315)
+..|....+++.+-.-. + ...+++++.+.++++.+.+-.+|.+|..-..+...
T Consensus 121 k~~g~~~~~i~~vSAk~----g-----------~gv~eL~~~l~~~~~~~~v~~vG~~nvGKStliN~ 173 (360)
T TIGR03597 121 KELGLKPVDIILVSAKK----G-----------NGIDELLDKIKKARNKKDVYVVGVTNVGKSSLINK 173 (360)
T ss_pred HHcCCCcCcEEEecCCC----C-----------CCHHHHHHHHHHHhCCCeEEEECCCCCCHHHHHHH
Confidence 77775434555443211 1 56788999998887777899999999987666443
No 163
>PRK10551 phage resistance protein; Provisional
Probab=33.62 E-value=3.9e+02 Score=26.28 Aligned_cols=114 Identities=11% Similarity=0.054 Sum_probs=69.7
Q ss_pred CCeEEeeccCCCCCCCCcHHHHHHHHHHhcCCCccceEeeecCCCccCCCCCCCCCCCCCCCHHHHHHHHHHHHhcCCee
Q 021264 74 EDLWITSKLWCTDLAPKDVPEALDNTLQDLQIDYVDLYLIHWPARMKKGSVGFNPENLLPLDIPSTWRAMEALYDSGKAR 153 (315)
Q Consensus 74 ~~~~i~tK~~~~~~~~~~i~~~ve~sL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~L~~lk~~GkIr 153 (315)
.++.++-.+.......+.+...+.+.++.++....-+. +.-.+... .......+.++.|++.|-
T Consensus 348 ~~~~lsINis~~~l~~~~f~~~l~~~l~~~~~~~~~Lv-lEItE~~~-------------~~~~~~~~~l~~Lr~~G~-- 411 (518)
T PRK10551 348 VGAKLGINISPAHLHSDSFKADVQRLLASLPADHFQIV-LEITERDM-------------VQEEEATKLFAWLHSQGI-- 411 (518)
T ss_pred CCcEEEEEeCHHHHCCchHHHHHHHHHHhCCCCcceEE-EEEechHh-------------cCCHHHHHHHHHHHHCCC--
Confidence 34566666655555566788899999999987644333 22222110 222456688999999998
Q ss_pred eEeecCCChh--hHHHHHHhcCCCCcccccccCcccc--------h--HHHHHHHHHcCceEEEe
Q 021264 154 AIGVCNFSTK--KLGDLLEIARVPPAVNQVECHSSWQ--------Q--QKLHAFCKSKGVHLSGY 206 (315)
Q Consensus 154 ~iGvS~~~~~--~l~~~~~~~~~~~~~~q~~~n~~~~--------~--~~~~~~~~~~gi~v~~~ 206 (315)
.|.+.+|+.. .+..+.. .+++.+-+.-+.... . ..++..|++.|+.+++=
T Consensus 412 ~ialDDFGtg~ssl~~L~~---l~vD~lKID~~fv~~i~~~~~~~~il~~ii~la~~lgi~vVAE 473 (518)
T PRK10551 412 EIAIDDFGTGHSALIYLER---FTLDYLKIDRGFIQAIGTETVTSPVLDAVLTLAKRLNMLTVAE 473 (518)
T ss_pred EEEEECCCCCchhHHHHHh---CCCCEEEECHHHHhhhccChHHHHHHHHHHHHHHHCCCEEEEE
Confidence 6777776543 3333322 344555544322221 1 46899999999999985
No 164
>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes. The function of this family is unknown.
Probab=33.56 E-value=79 Score=27.07 Aligned_cols=43 Identities=19% Similarity=0.091 Sum_probs=30.4
Q ss_pred CcccccccCcccchHHHHHHHHH---cCceEEEecCCCCCCCCCCc
Q 021264 176 PAVNQVECHSSWQQQKLHAFCKS---KGVHLSGYSPLGSPGTRWIK 218 (315)
Q Consensus 176 ~~~~q~~~n~~~~~~~~~~~~~~---~gi~v~~~~pl~~gg~~~~~ 218 (315)
+.+|.+++.++.....+++-+.+ .|=.++.|+|+..+|..+.+
T Consensus 107 ~~~N~lHI~p~~~~~~lf~~a~~~L~~gG~L~~YGPF~~~G~~ts~ 152 (204)
T PF06080_consen 107 FCINMLHISPWSAVEGLFAGAARLLKPGGLLFLYGPFNRDGKFTSE 152 (204)
T ss_pred eehhHHHhcCHHHHHHHHHHHHHhCCCCCEEEEeCCcccCCEeCCc
Confidence 45677777777666666666553 36668899999988866544
No 165
>COG4626 Phage terminase-like protein, large subunit [General function prediction only]
Probab=33.44 E-value=1.5e+02 Score=29.41 Aligned_cols=50 Identities=10% Similarity=0.005 Sum_probs=37.9
Q ss_pred CCHHHHHHHHHHHHhcCCeeeEeecCCChhhHHHHHHhcCCCCccccccc
Q 021264 134 LDIPSTWRAMEALYDSGKARAIGVCNFSTKKLGDLLEIARVPPAVNQVEC 183 (315)
Q Consensus 134 ~~~~~~~~~L~~lk~~GkIr~iGvS~~~~~~l~~~~~~~~~~~~~~q~~~ 183 (315)
.+..++.+.+.+.++..+|+++|+-.+...++...++..+++++.+.-.|
T Consensus 410 id~~~I~ew~~~~~~~~~i~~v~~D~~g~~~~~~~l~~~g~~lv~i~Q~~ 459 (546)
T COG4626 410 IDYAEIVEWFMEIREKFLIKLVGFDPSGAGEFRDALAEAGIKVVGIPQGF 459 (546)
T ss_pred cCHHHHHHHHHHHHHhCCccEEeecccchHHHHHHHHhCCCceeeccchh
Confidence 55678888888888888999999888888888877777776644443333
No 166
>cd07939 DRE_TIM_NifV Streptomyces rubellomurinus FrbC and related proteins, catalytic TIM barrel domain. FrbC (NifV) of Streptomyces rubellomurinus catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate and CoA, a reaction similar to one catalyzed by homocitrate synthase. The gene encoding FrbC is one of several genes required for the biosynthesis of FR900098, a potent antimalarial antibiotic. This protein is also required for assembly of the nitrogenase MoFe complex but its exact role is unknown. This family also includes the NifV proteins of Heliobacterium chlorum and Gluconacetobacter diazotrophicus, which appear to be orthologous to FrbC. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarbox
Probab=33.42 E-value=3.3e+02 Score=23.87 Aligned_cols=97 Identities=18% Similarity=0.192 Sum_probs=58.2
Q ss_pred cHHHHHHHHHHhcCCCccceEeeecCCCccCCCCCCCCCCCCCCCHHHHHHHHHHHHhc-CCeeeEeecCCChhhHHHHH
Q 021264 91 DVPEALDNTLQDLQIDYVDLYLIHWPARMKKGSVGFNPENLLPLDIPSTWRAMEALYDS-GKARAIGVCNFSTKKLGDLL 169 (315)
Q Consensus 91 ~i~~~ve~sL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~L~~lk~~-GkIr~iGvS~~~~~~l~~~~ 169 (315)
.-+..+-+.|.++|+++|++-+ |.. .+.-++.++.+.+. ..++..+++....+.++.+.
T Consensus 20 ~~k~~i~~~L~~~Gv~~iE~g~---p~~-----------------~~~~~e~~~~l~~~~~~~~~~~~~r~~~~~v~~a~ 79 (259)
T cd07939 20 EEKLAIARALDEAGVDEIEVGI---PAM-----------------GEEEREAIRAIVALGLPARLIVWCRAVKEDIEAAL 79 (259)
T ss_pred HHHHHHHHHHHHcCCCEEEEec---CCC-----------------CHHHHHHHHHHHhcCCCCEEEEeccCCHHHHHHHH
Confidence 3567777889999999999962 211 12235666777663 34667777767777887776
Q ss_pred HhcCCCCcccccccCcccch--------------HHHHHHHHHcCceEEEecC
Q 021264 170 EIARVPPAVNQVECHSSWQQ--------------QKLHAFCKSKGVHLSGYSP 208 (315)
Q Consensus 170 ~~~~~~~~~~q~~~n~~~~~--------------~~~~~~~~~~gi~v~~~~p 208 (315)
+. +.+...+-++.|..+.. .+.+++|+++|+.+....+
T Consensus 80 ~~-g~~~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~v~~~~~ 131 (259)
T cd07939 80 RC-GVTAVHISIPVSDIHLAHKLGKDRAWVLDQLRRLVGRAKDRGLFVSVGAE 131 (259)
T ss_pred hC-CcCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEeec
Confidence 53 33222222222322210 3578899999987664333
No 167
>TIGR00742 yjbN tRNA dihydrouridine synthase A. Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase.
Probab=33.14 E-value=3.9e+02 Score=24.52 Aligned_cols=143 Identities=13% Similarity=0.084 Sum_probs=76.6
Q ss_pred cCCcchHHHHHHHHHHhCCcEEe----------cCCCCCC-----HHHHHHHHHHhhhcCCcCCCCeEEeeccCCCCCCC
Q 021264 25 QADPGIVGNAVDVAIKAGYRHID----------CARLYLN-----EKEIGFVLKKLFEDGVVKREDLWITSKLWCTDLAP 89 (315)
Q Consensus 25 ~~~~~~~~~~l~~A~~~Gi~~~D----------tA~~Ygs-----e~~lG~~l~~~~~~~~~~R~~~~i~tK~~~~~~~~ 89 (315)
..++++..+..+.+.+.|+..+| +...||+ .+.+.+.++...+ .-++-|+.|+.....+.
T Consensus 63 g~~p~~~~~aA~~~~~~g~d~IDlN~GCP~~~v~~~g~Gs~Ll~~p~~~~~iv~av~~-----~~~~PVsvKiR~g~~~~ 137 (318)
T TIGR00742 63 GSDPNDLAKCAKIAEKRGYDEINLNVGCPSDRVQNGNFGACLMGNADLVADCVKAMQE-----AVNIPVTVKHRIGIDPL 137 (318)
T ss_pred cCCHHHHHHHHHHHHhCCCCEEEEECCCCHHHhCCCCeehHhhcCHHHHHHHHHHHHH-----HhCCCeEEEEecCCCCc
Confidence 45667777778888888999999 4556773 4455666655411 11345777773211111
Q ss_pred CcHH--HHHHHHHHhcCCCccceEeeecCCCccCCCCCCCCCCCCCCCHHHHHHHHHHHHhcC-CeeeEeecC-CChhhH
Q 021264 90 KDVP--EALDNTLQDLQIDYVDLYLIHWPARMKKGSVGFNPENLLPLDIPSTWRAMEALYDSG-KARAIGVCN-FSTKKL 165 (315)
Q Consensus 90 ~~i~--~~ve~sL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~L~~lk~~G-kIr~iGvS~-~~~~~l 165 (315)
+... ..+-+.|...| +|.+-+|.-.....+ +......... .--|+...++++.- .|--||... ++.+++
T Consensus 138 ~~~~~~~~~~~~l~~~G---~~~itvHgRt~~~qg---~sg~~~~~~~-~~~~~~i~~vk~~~~~ipVi~NGdI~s~~da 210 (318)
T TIGR00742 138 DSYEFLCDFVEIVSGKG---CQNFIVHARKAWLSG---LSPKENREIP-PLRYERVYQLKKDFPHLTIEINGGIKNSEQI 210 (318)
T ss_pred chHHHHHHHHHHHHHcC---CCEEEEeCCchhhcC---CCccccccCC-chhHHHHHHHHHhCCCCcEEEECCcCCHHHH
Confidence 1111 23344455555 788899965431111 0000000011 12477777787765 677777665 355566
Q ss_pred HHHHHhcCCCCccccccc
Q 021264 166 GDLLEIARVPPAVNQVEC 183 (315)
Q Consensus 166 ~~~~~~~~~~~~~~q~~~ 183 (315)
.+.+. ..+.+|+-=
T Consensus 211 ~~~l~----g~dgVMigR 224 (318)
T TIGR00742 211 KQHLS----HVDGVMVGR 224 (318)
T ss_pred HHHHh----CCCEEEECH
Confidence 65553 245555543
No 168
>cd02801 DUS_like_FMN Dihydrouridine synthase-like (DUS-like) FMN-binding domain. Members of this family catalyze the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archaea. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. 1VHN, a putative flavin oxidoreductase, has high sequence similarity to DUS. The enzymatic mechanism of 1VHN is not known at the present.
Probab=32.91 E-value=3.1e+02 Score=23.28 Aligned_cols=133 Identities=17% Similarity=0.176 Sum_probs=71.8
Q ss_pred CcchHHHHHHHHHHhCCcEEecC----------CCCC-----CHHHHHHHHHHhhhcCCcCCCCeEEeeccCCCCCCCCc
Q 021264 27 DPGIVGNAVDVAIKAGYRHIDCA----------RLYL-----NEKEIGFVLKKLFEDGVVKREDLWITSKLWCTDLAPKD 91 (315)
Q Consensus 27 ~~~~~~~~l~~A~~~Gi~~~DtA----------~~Yg-----se~~lG~~l~~~~~~~~~~R~~~~i~tK~~~~~~~~~~ 91 (315)
++++..+..+.+.++|+..+|.= +.|| ..+.+-+.++..-+ . ++ +-+..|+.... +.+.
T Consensus 65 ~~~~~~~aa~~~~~aG~d~ieln~g~p~~~~~~~~~G~~l~~~~~~~~eii~~v~~-~-~~---~~v~vk~r~~~-~~~~ 138 (231)
T cd02801 65 DPETLAEAAKIVEELGADGIDLNMGCPSPKVTKGGAGAALLKDPELVAEIVRAVRE-A-VP---IPVTVKIRLGW-DDEE 138 (231)
T ss_pred CHHHHHHHHHHHHhcCCCEEEEeCCCCHHHHhCCCeeehhcCCHHHHHHHHHHHHH-h-cC---CCEEEEEeecc-CCch
Confidence 56777788888889999998852 3476 23334444444310 1 11 34566653211 1111
Q ss_pred HHHHHHHHHHhcCCCccceEeeecCCCccCCCCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeeEeecCC-ChhhHHHHHH
Q 021264 92 VPEALDNTLQDLQIDYVDLYLIHWPARMKKGSVGFNPENLLPLDIPSTWRAMEALYDSGKARAIGVCNF-STKKLGDLLE 170 (315)
Q Consensus 92 i~~~ve~sL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~L~~lk~~GkIr~iGvS~~-~~~~l~~~~~ 170 (315)
-...+-+.|+..| +|.+.+|....... ......|+.+..+++.-.+.-++.... +.+++.++++
T Consensus 139 ~~~~~~~~l~~~G---vd~i~v~~~~~~~~------------~~~~~~~~~~~~i~~~~~ipvi~~Ggi~~~~d~~~~l~ 203 (231)
T cd02801 139 ETLELAKALEDAG---ASALTVHGRTREQR------------YSGPADWDYIAEIKEAVSIPVIANGDIFSLEDALRCLE 203 (231)
T ss_pred HHHHHHHHHHHhC---CCEEEECCCCHHHc------------CCCCCCHHHHHHHHhCCCCeEEEeCCCCCHHHHHHHHH
Confidence 1223334456666 56667776432110 001123677777877777776776665 5777777776
Q ss_pred hcCCCCcccccc
Q 021264 171 IARVPPAVNQVE 182 (315)
Q Consensus 171 ~~~~~~~~~q~~ 182 (315)
..+. +.+++-
T Consensus 204 ~~ga--d~V~ig 213 (231)
T cd02801 204 QTGV--DGVMIG 213 (231)
T ss_pred hcCC--CEEEEc
Confidence 5332 444443
No 169
>COG4669 EscJ Type III secretory pathway, lipoprotein EscJ [Intracellular trafficking and secretion]
Probab=32.90 E-value=1.6e+02 Score=25.76 Aligned_cols=79 Identities=14% Similarity=0.178 Sum_probs=57.3
Q ss_pred cCCcchHHHHHHHHHHhCCcEEecCCCCC------CHHHHHHHHHHhhhcCCcCCCCeEEeeccCCCCC---CC------
Q 021264 25 QADPGIVGNAVDVAIKAGYRHIDCARLYL------NEKEIGFVLKKLFEDGVVKREDLWITSKLWCTDL---AP------ 89 (315)
Q Consensus 25 ~~~~~~~~~~l~~A~~~Gi~~~DtA~~Yg------se~~lG~~l~~~~~~~~~~R~~~~i~tK~~~~~~---~~------ 89 (315)
+.+..|+.+++..-+++||+.=-.++.-| .|.-+.+++.-.-..| .||+++.=...+.+.+. +|
T Consensus 27 gL~e~eANemlAlL~~~gI~A~K~~~~~g~~~l~Ve~~~fa~Av~iL~~~G-lPr~~f~~l~d~Fp~dgLVsSP~eEkaR 105 (246)
T COG4669 27 GLSEKEANEMLALLMSHGINAEKKADKDGGTSLLVEESDFAEAVEILNQNG-LPRKKFTTLGDIFPKDGLVSSPTEEKAR 105 (246)
T ss_pred CCCHhHHHHHHHHHHHcCCcceeeccCCCceEEEEcHHHHHHHHHHHHhcC-CCCCCCCcHHHhCCcccccCCcHHHHHH
Confidence 47889999999999999999888887766 3777777754332235 68888776666665442 22
Q ss_pred --CcHHHHHHHHHHhcC
Q 021264 90 --KDVPEALDNTLQDLQ 104 (315)
Q Consensus 90 --~~i~~~ve~sL~~Lg 104 (315)
..+.++++++|.++.
T Consensus 106 ~~~~~eQ~le~tLs~mD 122 (246)
T COG4669 106 LNYAKEQQLEQTLSKMD 122 (246)
T ss_pred HHHHHHHHHHHHHHhcC
Confidence 236688999999885
No 170
>PRK13361 molybdenum cofactor biosynthesis protein A; Provisional
Probab=32.87 E-value=3.9e+02 Score=24.44 Aligned_cols=107 Identities=10% Similarity=0.019 Sum_probs=57.2
Q ss_pred CCcchHHHHHHHHHHhCCcEEecCCCCC-C--HHHHHHHHHHhhhcCCcCCCCeEEeeccCCCCCCCCcHHHHHHHHHHh
Q 021264 26 ADPGIVGNAVDVAIKAGYRHIDCARLYL-N--EKEIGFVLKKLFEDGVVKREDLWITSKLWCTDLAPKDVPEALDNTLQD 102 (315)
Q Consensus 26 ~~~~~~~~~l~~A~~~Gi~~~DtA~~Yg-s--e~~lG~~l~~~~~~~~~~R~~~~i~tK~~~~~~~~~~i~~~ve~sL~~ 102 (315)
.+.+++..+++.+.+.|+..|--+. | . ..-+-..++...+.+ ...++.|+|-.. .+. ..-+.|+.
T Consensus 45 ls~eei~~li~~~~~~Gv~~I~~tG--GEPllr~dl~~li~~i~~~~--~l~~i~itTNG~-------ll~-~~~~~L~~ 112 (329)
T PRK13361 45 LSLEELAWLAQAFTELGVRKIRLTG--GEPLVRRGCDQLVARLGKLP--GLEELSLTTNGS-------RLA-RFAAELAD 112 (329)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEEC--cCCCccccHHHHHHHHHhCC--CCceEEEEeChh-------HHH-HHHHHHHH
Confidence 4557788899999999998876542 3 1 111223333321111 122455555431 122 34566777
Q ss_pred cCCCccceEeeecCCCccCCCCCCCCCCCCCCCHHHHHHHHHHHHhcCC
Q 021264 103 LQIDYVDLYLIHWPARMKKGSVGFNPENLLPLDIPSTWRAMEALYDSGK 151 (315)
Q Consensus 103 Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~L~~lk~~Gk 151 (315)
.|++++. +-|+..++..... ... ....+.+++.++.+++.|.
T Consensus 113 aGl~~v~-ISlDs~~~e~~~~--i~~----~g~~~~vl~~i~~~~~~Gi 154 (329)
T PRK13361 113 AGLKRLN-ISLDTLRPELFAA--LTR----NGRLERVIAGIDAAKAAGF 154 (329)
T ss_pred cCCCeEE-EEeccCCHHHhhh--hcC----CCCHHHHHHHHHHHHHcCC
Confidence 7877665 3455544321100 000 0346788899999888875
No 171
>TIGR01579 MiaB-like-C MiaB-like tRNA modifying enzyme. This clade is a member of a subfamily (TIGR00089) and spans low GC Gram positive bacteria, alpha and epsilon proteobacteria, Campylobacter, Porphyromonas, Aquifex, Thermotoga, Chlamydia, Treponema and Fusobacterium.
Probab=32.87 E-value=2.8e+02 Score=26.27 Aligned_cols=68 Identities=15% Similarity=0.214 Sum_probs=37.0
Q ss_pred CCCCHHHHHHHHHHHHhcCCeeeEeecC-----CC-----hhhHHHHHHhcCCCCcccccccC---cccchHHHHHHHHH
Q 021264 132 LPLDIPSTWRAMEALYDSGKARAIGVCN-----FS-----TKKLGDLLEIARVPPAVNQVECH---SSWQQQKLHAFCKS 198 (315)
Q Consensus 132 ~~~~~~~~~~~L~~lk~~GkIr~iGvS~-----~~-----~~~l~~~~~~~~~~~~~~q~~~n---~~~~~~~~~~~~~~ 198 (315)
-..+.+++++.++.+++.| ++.|-+.. +. ...+.++++.....+....+.++ +..-+.++++..++
T Consensus 165 r~r~~e~I~~Ei~~l~~~g-~~ei~l~~~~~~~y~~d~~~~~~l~~Ll~~l~~~~~~~~ir~~~~~p~~~~~ell~~m~~ 243 (414)
T TIGR01579 165 RSVPMEAILKQVKILVAKG-YKEIVLTGVNLGSYGDDLKNGTSLAKLLEQILQIPGIKRIRLSSIDPEDIDEELLEAIAS 243 (414)
T ss_pred ccCCHHHHHHHHHHHHHCC-CceEEEeeEccchhccCCCCCCcHHHHHHHHhcCCCCcEEEEeCCChhhCCHHHHHHHHh
Confidence 3467899999999999987 45554421 22 12344554432110111122222 22234788888887
Q ss_pred cC
Q 021264 199 KG 200 (315)
Q Consensus 199 ~g 200 (315)
.+
T Consensus 244 ~~ 245 (414)
T TIGR01579 244 EK 245 (414)
T ss_pred cC
Confidence 65
No 172
>COG1880 CdhB CO dehydrogenase/acetyl-CoA synthase epsilon subunit [Energy production and conversion]
Probab=32.68 E-value=2.5e+02 Score=23.07 Aligned_cols=112 Identities=15% Similarity=-0.007 Sum_probs=57.6
Q ss_pred ccccccCcCCcchHHHHHHHHHHhC-CcEEecCCCCCC--H----------HHHHHHHHHh-hh--cCCcCCCCeEEeec
Q 021264 18 SVGLGTWQADPGIVGNAVDVAIKAG-YRHIDCARLYLN--E----------KEIGFVLKKL-FE--DGVVKREDLWITSK 81 (315)
Q Consensus 18 ~lglG~~~~~~~~~~~~l~~A~~~G-i~~~DtA~~Ygs--e----------~~lG~~l~~~-~~--~~~~~R~~~~i~tK 81 (315)
-+..|+-.. +++..+.+-...+.+ +..+=||+.+++ + ..++..+++. +. +| -...++.|.+-
T Consensus 39 LlivGp~~~-dee~~E~~vKi~ekfnipivaTa~~~~~~~~~~i~~~~~~lh~it~~l~Dp~w~G~dg-~g~yDlviflG 116 (170)
T COG1880 39 LLIVGPLAL-DEELLELAVKIIEKFNIPIVATASSMGNLIGRGIGSEYINLHAITQYLTDPNWPGFDG-NGNYDLVIFLG 116 (170)
T ss_pred eEEeccccc-CHHHHHHHHHHHHhcCCceEecchhhcchhhcccccchhHHHHHHHHhcCCCCCCcCC-CCCcceEEEEe
Confidence 344455334 455555555556666 999999999972 2 2233444331 00 01 01234444443
Q ss_pred cCCCCCCCCcHHHHHHHHHHhcC---CCccceEeeecCCCccCCCCCCCCCCCCCCCHHHHHHHHHHHHh
Q 021264 82 LWCTDLAPKDVPEALDNTLQDLQ---IDYVDLYLIHWPARMKKGSVGFNPENLLPLDIPSTWRAMEALYD 148 (315)
Q Consensus 82 ~~~~~~~~~~i~~~ve~sL~~Lg---~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~L~~lk~ 148 (315)
. ......++-.+|+.+. +=.||=++.-+.+...+ ....++.+++|++|.+
T Consensus 117 ~------~~yy~sq~Ls~lKhFs~i~tiaId~~Y~pnAd~SFp-----------Nl~kde~~~~L~ell~ 169 (170)
T COG1880 117 S------IYYYLSQVLSGLKHFSNIKTIAIDRYYQPNADYSFP-----------NLSKDEYLAYLDELLD 169 (170)
T ss_pred c------cHHHHHHHHHHhhhhhcceEEEeccccCcCccccCC-----------CcCHHHHHHHHHHHhc
Confidence 3 2235566666776664 22233333323222211 1567788999998865
No 173
>PF01118 Semialdhyde_dh: Semialdehyde dehydrogenase, NAD binding domain; InterPro: IPR000534 The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase [], an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3Q0E_B 1MB4_A 3PZR_A 1MC4_A 3TZ6_A 3VOS_A 2CVO_B 2R00_C 2QZ9_A 2EP5_C ....
Probab=32.66 E-value=57 Score=24.94 Aligned_cols=28 Identities=21% Similarity=0.217 Sum_probs=24.8
Q ss_pred CCcchHHHHHHHHHHhCCcEEecCCCCC
Q 021264 26 ADPGIVGNAVDVAIKAGYRHIDCARLYL 53 (315)
Q Consensus 26 ~~~~~~~~~l~~A~~~Gi~~~DtA~~Yg 53 (315)
.+.+...+....+++.|+.+||.+..|.
T Consensus 74 ~~~~~~~~~~~~~~~~g~~ViD~s~~~R 101 (121)
T PF01118_consen 74 LPHGASKELAPKLLKAGIKVIDLSGDFR 101 (121)
T ss_dssp SCHHHHHHHHHHHHHTTSEEEESSSTTT
T ss_pred CchhHHHHHHHHHhhCCcEEEeCCHHHh
Confidence 5667788999999999999999999984
No 174
>cd01981 Pchlide_reductase_B Pchlide_reductase_B: B protein of the NB protein complex of Protochlorophyllide (Pchlide)_reductase. Pchlide reductase catalyzes the reductive formation of chlorophyllide (chlide) from protochlorophyllide (pchlide) during biosynthesis of chlorophylls and bacteriochlorophylls. This group contains both the light-independent Pchlide reductase (DPOR) and light-dependent Pchlide reductase (LPOR). Angiosperms contain only LPOR, cyanobacteria, algae and gymnosperms contain both DPOR and LPOR, primitive anoxygenic photosynthetic bacteria contain only DPOR. NB is structurally similar to the FeMo protein of nitrogenase, forming an N2B2 heterotetramer. N and B are homologous to the FeMo alpha and beta subunits respectively. Also in common with nitrogenase in vitro DPOR activity requires ATP hydrolysis and dithoionite or ferredoxin as electron donor. The NB protein complex may serve as a catalytic site for Pchlide reduction similar to MoFe for nitrogen reduction.
Probab=32.62 E-value=4.4e+02 Score=25.06 Aligned_cols=61 Identities=5% Similarity=0.001 Sum_probs=32.4
Q ss_pred CCHHHHHHHHHHhhhcCCcCCCCeEEeeccCCCCCCCCcHHHHHHHHHHhcCCCccceEeeecCCCc
Q 021264 53 LNEKEIGFVLKKLFEDGVVKREDLWITSKLWCTDLAPKDVPEALDNTLQDLQIDYVDLYLIHWPARM 119 (315)
Q Consensus 53 gse~~lG~~l~~~~~~~~~~R~~~~i~tK~~~~~~~~~~i~~~ve~sL~~Lg~d~iDl~~lH~p~~~ 119 (315)
|+++.|-++|.+..++. +.+-++|.|-+ ....--+.+..-+++.-++++ +.++.+|.|...
T Consensus 68 G~~~kL~~~I~~~~~~~--~p~~I~v~~tC-~~~iIGdDi~~v~~~~~~~~~---~~vi~v~t~gf~ 128 (430)
T cd01981 68 GSQEKVVENITRKDKEE--KPDLIVLTPTC-TSSILQEDLQNFVRAAGLSSK---SPVLPLDVNHYR 128 (430)
T ss_pred CcHHHHHHHHHHHHHhc--CCCEEEEeCCc-cHHHHhhCHHHHHHHhhhccC---CCeEEecCCCcc
Confidence 45556666776654432 33444455443 333333444444444333433 678889988764
No 175
>cd00885 cinA Competence-damaged protein. CinA is the first gene in the competence- inducible (cin) operon and is thought to be specifically required at some stage in the process of transformation. This domain is closely related to a domain, found in a variety of proteins involved in biosynthesis of molybdopterin cofactor, where the domain is presumed to bind molybdopterin.
Probab=32.25 E-value=2.1e+02 Score=23.57 Aligned_cols=62 Identities=18% Similarity=0.081 Sum_probs=38.6
Q ss_pred HHHHHHHHhCCcEEecCCCCCCHHHHHHHHHHhhhcCCcCCCCeEEeeccCCCCCCCCcHHHHHHHHH
Q 021264 33 NAVDVAIKAGYRHIDCARLYLNEKEIGFVLKKLFEDGVVKREDLWITSKLWCTDLAPKDVPEALDNTL 100 (315)
Q Consensus 33 ~~l~~A~~~Gi~~~DtA~~Ygse~~lG~~l~~~~~~~~~~R~~~~i~tK~~~~~~~~~~i~~~ve~sL 100 (315)
-+-....+.|++.....-.-.++..|-++|+.. ..+.+++|+| .+......+.+.+.+.+.+
T Consensus 23 ~l~~~L~~~G~~v~~~~~v~Dd~~~I~~~l~~~-----~~~~dlVItt-GG~G~t~~D~t~ea~~~~~ 84 (170)
T cd00885 23 FLAKELAELGIEVYRVTVVGDDEDRIAEALRRA-----SERADLVITT-GGLGPTHDDLTREAVAKAF 84 (170)
T ss_pred HHHHHHHHCCCEEEEEEEeCCCHHHHHHHHHHH-----HhCCCEEEEC-CCCCCCCCChHHHHHHHHh
Confidence 334445577998876544434677788888876 2578899988 4333333455666666554
No 176
>PRK14463 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=32.24 E-value=2.3e+02 Score=26.38 Aligned_cols=101 Identities=18% Similarity=0.179 Sum_probs=60.4
Q ss_pred cce-EeeecCCCccCCCCCCCCCCCCCCCHHHHHHHHHHHHhcC--C--eeeEeecC--CChhhHHHHHHhcC-CCCccc
Q 021264 108 VDL-YLIHWPARMKKGSVGFNPENLLPLDIPSTWRAMEALYDSG--K--ARAIGVCN--FSTKKLGDLLEIAR-VPPAVN 179 (315)
Q Consensus 108 iDl-~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~L~~lk~~G--k--Ir~iGvS~--~~~~~l~~~~~~~~-~~~~~~ 179 (315)
+-+ +-||.++......-. + .+ ...+.+++++++.+....+ + |+++=+.. .+.++++++.+... .+..++
T Consensus 207 ~~LaiSL~a~~~e~r~~I~-p-in-k~~~l~~l~~a~~~~~~~~~~~v~ieyvLI~GvNDs~e~~~~L~~ll~~l~~~vn 283 (349)
T PRK14463 207 VNLAVSLNATTDEVRDRIM-P-VN-RRYPLAELLAACKAFPLPGRRKITIEYVMIRGLNDSLEDAKRLVRLLSDIPSKVN 283 (349)
T ss_pred eEEEEeCCCCCHHHHHHhc-C-cc-cCCCHHHHHHHHHHHHHhcCCeEEEEEEEeCCCCCCHHHHHHHHHHHhccCceEE
Confidence 344 568887664322100 0 00 0145788888888776654 2 34455553 44577777777654 455677
Q ss_pred ccccCcccc------h----HHHHHHHHHcCceEEEecCCCC
Q 021264 180 QVECHSSWQ------Q----QKLHAFCKSKGVHLSGYSPLGS 211 (315)
Q Consensus 180 q~~~n~~~~------~----~~~~~~~~~~gi~v~~~~pl~~ 211 (315)
-++||+... . ..+....+++|+.+......+.
T Consensus 284 lIPyn~~~~~~~~~ps~e~i~~f~~~L~~~gi~v~vR~~~G~ 325 (349)
T PRK14463 284 LIPFNEHEGCDFRSPTQEAIDRFHKYLLDKHVTVITRSSRGS 325 (349)
T ss_pred EEecCCCCCCCCCCCCHHHHHHHHHHHHHCCceEEEeCCCCc
Confidence 788877542 1 3456677888999988877743
No 177
>PRK11359 cyclic-di-GMP phosphodiesterase; Provisional
Probab=32.20 E-value=4.9e+02 Score=26.66 Aligned_cols=112 Identities=14% Similarity=0.217 Sum_probs=69.4
Q ss_pred EeeccCCCCCCCCcHHHHHHHHHHhcCCCccceEeeecCCCccCCCCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeeEee
Q 021264 78 ITSKLWCTDLAPKDVPEALDNTLQDLQIDYVDLYLIHWPARMKKGSVGFNPENLLPLDIPSTWRAMEALYDSGKARAIGV 157 (315)
Q Consensus 78 i~tK~~~~~~~~~~i~~~ve~sL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~L~~lk~~GkIr~iGv 157 (315)
++--+.........+...+...|+..+... .-+.+--..... ........+.+..|++.|- .+++
T Consensus 632 ~~inls~~~l~~~~~~~~l~~~l~~~~~~~-~~l~~ei~e~~~------------~~~~~~~~~~l~~l~~~G~--~i~l 696 (799)
T PRK11359 632 LSVNLSALHFRSNQLPNQVSDAMQAWGIDG-HQLTVEITESMM------------MEHDTEIFKRIQILRDMGV--GLSV 696 (799)
T ss_pred EEEECCHHHhCCchHHHHHHHHHHHhCcCh-HhEEEEEcCchh------------hcCHHHHHHHHHHHHHCCC--EEEE
Confidence 333333334445567888899999888653 233332222110 0345678899999999998 7888
Q ss_pred cCCChh--hHHHHHHhcCCCCcccccccCcccc--------h--HHHHHHHHHcCceEEEec
Q 021264 158 CNFSTK--KLGDLLEIARVPPAVNQVECHSSWQ--------Q--QKLHAFCKSKGVHLSGYS 207 (315)
Q Consensus 158 S~~~~~--~l~~~~~~~~~~~~~~q~~~n~~~~--------~--~~~~~~~~~~gi~v~~~~ 207 (315)
.+|... .+..+ ...+++++-+.-+.... . ..++..|++.|+.+++-+
T Consensus 697 d~fg~~~~~~~~l---~~l~~d~iKid~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~via~g 755 (799)
T PRK11359 697 DDFGTGFSGLSRL---VSLPVTEIKIDKSFVDRCLTEKRILALLEAITSIGQSLNLTVVAEG 755 (799)
T ss_pred ECCCCchhhHHHH---hhCCCCEEEECHHHHhhcccChhHHHHHHHHHHHHHHCCCeEEEEc
Confidence 887643 33333 23456666666544321 1 568899999999999853
No 178
>TIGR00048 radical SAM enzyme, Cfr family. A Staphylococcus sciuri plasmid-borne member of this family, Cfr, has been identified as essential to transferrable resistance to chloramphenicol and florfenicol by an unknown mechanism. A 14-15 residue cluster with four perfectly conserved Cys residues suggests this protein may be an enzyme with an iron-sulfur cluster. The Cys cluster is part of the radical SAM domain, suggested to provide a general mechanism by which the Fe-S center cleaves S-adenosylmethionine to initiate radical-based catalysis. Members of this family lack apparent transmembrane domains.
Probab=31.46 E-value=2.6e+02 Score=26.04 Aligned_cols=98 Identities=13% Similarity=0.133 Sum_probs=58.0
Q ss_pred EeeecCCCccCCCCCCCCCCCCCCCHHHHHHHHHHHHh-cCC---eeeEeecCC--ChhhHHHHHHhcC-CCCccccccc
Q 021264 111 YLIHWPARMKKGSVGFNPENLLPLDIPSTWRAMEALYD-SGK---ARAIGVCNF--STKKLGDLLEIAR-VPPAVNQVEC 183 (315)
Q Consensus 111 ~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~L~~lk~-~Gk---Ir~iGvS~~--~~~~l~~~~~~~~-~~~~~~q~~~ 183 (315)
+-||.++......-...... .+.+++++++.++.+ .|+ |+++=+.+. +.+++.++.+... .++.++-++|
T Consensus 219 iSL~a~~~e~r~~l~p~~~~---~~l~~ll~~l~~~~~~~g~~VtieyvLI~GvNDs~e~a~~La~llk~l~~~VnLIPy 295 (355)
T TIGR00048 219 ISLHAPNDELRSSLMPINKK---YNIETLLAAVRRYLNKTGRRVTFEYVLLDGVNDQVEHAEELAELLKGTKCKVNLIPW 295 (355)
T ss_pred EEeCCCCHHHHHHhcCcccC---CCHHHHHHHHHHHHHHhCCEEEEEEEEECCCCCCHHHHHHHHHHHhcCCCceEEEec
Confidence 67898875432111000000 357888988887644 443 445545444 3477777766543 4556777788
Q ss_pred Ccccch----------HHHHHHHHHcCceEEEecCCCC
Q 021264 184 HSSWQQ----------QKLHAFCKSKGVHLSGYSPLGS 211 (315)
Q Consensus 184 n~~~~~----------~~~~~~~~~~gi~v~~~~pl~~ 211 (315)
|++... ..+.+..+++|+.+......+.
T Consensus 296 np~~~~~~~~ps~e~i~~f~~~L~~~gi~v~iR~~~G~ 333 (355)
T TIGR00048 296 NPFPEADYERPSNEQIDRFAKTLMSYGFTVTIRKSRGD 333 (355)
T ss_pred ccCCCCCCCCCCHHHHHHHHHHHHHCCCeEEEeCCCCc
Confidence 775421 2356667788999998877743
No 179
>COG1358 RPL8A Ribosomal protein HS6-type (S12/L30/L7a) [Translation, ribosomal structure and biogenesis]
Probab=31.36 E-value=1.5e+02 Score=22.90 Aligned_cols=65 Identities=15% Similarity=0.149 Sum_probs=48.3
Q ss_pred HHHHHHHHHHHHhcCCeeeEeecCCChhhHHHHHHhcCCCCcccccccCcccchHHHHHHHHHcCceEEEe
Q 021264 136 IPSTWRAMEALYDSGKARAIGVCNFSTKKLGDLLEIARVPPAVNQVECHSSWQQQKLHAFCKSKGVHLSGY 206 (315)
Q Consensus 136 ~~~~~~~L~~lk~~GkIr~iGvS~~~~~~l~~~~~~~~~~~~~~q~~~n~~~~~~~~~~~~~~~gi~v~~~ 206 (315)
.+..++.+....+.|+|. .+..+..++++.....++++--..++..--.-+-..|++++|+++-.
T Consensus 12 ~~k~l~~l~~a~~~~ki~------~G~~e~~Kai~~g~a~LVviA~Dv~P~~~~~~l~~lc~~~~vpyv~V 76 (116)
T COG1358 12 EQKALSLLGKASRAGKLK------KGTNEVTKAIERGKAKLVVIAEDVSPEELVKHLPALCEEKNVPYVYV 76 (116)
T ss_pred HHHHHHHHHHHHhcCCch------hhHHHHHHHHHcCCCcEEEEecCCCHHHHHHHHHHHHHhcCCCEEEe
Confidence 467788889999999876 45677888888776666666655555444456788999999998765
No 180
>PRK15440 L-rhamnonate dehydratase; Provisional
Probab=31.31 E-value=1.6e+02 Score=27.91 Aligned_cols=66 Identities=15% Similarity=0.135 Sum_probs=41.1
Q ss_pred HHHHHHHHHhcCC--ee-eEeecCCChhhHHHHHHhcCCCCcccccccCccc---chHHHHHHHHHcCceEEEe
Q 021264 139 TWRAMEALYDSGK--AR-AIGVCNFSTKKLGDLLEIARVPPAVNQVECHSSW---QQQKLHAFCKSKGVHLSGY 206 (315)
Q Consensus 139 ~~~~L~~lk~~Gk--Ir-~iGvS~~~~~~l~~~~~~~~~~~~~~q~~~n~~~---~~~~~~~~~~~~gi~v~~~ 206 (315)
-++.+.+|++.-. |. .-|-+.++......+++... .+++|....-+- .-.++...|+.+|+.++.+
T Consensus 247 d~~~~~~L~~~~~~~i~ia~gE~~~~~~~~~~li~~~a--~Divq~d~~~~GGit~~~kia~lA~a~gi~~~pH 318 (394)
T PRK15440 247 DYWGYRELKRNAPAGMMVTSGEHEATLQGFRTLLEMGC--IDIIQPDVGWCGGLTELVKIAALAKARGQLVVPH 318 (394)
T ss_pred cHHHHHHHHHhCCCCCceecCCCccCHHHHHHHHHcCC--CCEEeCCccccCCHHHHHHHHHHHHHcCCeeccc
Confidence 3666777766643 21 23666667777777776533 367777765442 2256778888888887654
No 181
>cd00338 Ser_Recombinase Serine Recombinase family, catalytic domain; a DNA binding domain may be present either N- or C-terminal to the catalytic domain. These enzymes perform site-specific recombination of DNA molecules by a concerted, four-strand cleavage and rejoining mechanism which involves a transient phosphoserine linkage between DNA and serine recombinase. Serine recombinases demonstrate functional versatility and include resolvases, invertases, integrases, and transposases. Resolvases and invertases (i.e. Tn3, gamma-delta, Tn5044 resolvases, Gin and Hin invertases) in this family contain a C-terminal DNA binding domain and comprise a major phylogenic group. Also included are phage- and bacterial-encoded recombinases such as phiC31 integrase, SpoIVCA excisionase, and Tn4451 TnpX transposase. These integrases and transposases have larger C-terminal domains compared to resolvases/invertases and are referred to as large serine recombinases. Also belonging to this family are protei
Probab=31.21 E-value=93 Score=23.89 Aligned_cols=53 Identities=19% Similarity=0.264 Sum_probs=40.4
Q ss_pred HHHHHHHHHHhcCCCccceEeeecCCCccCCCCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeeEeec
Q 021264 92 VPEALDNTLQDLQIDYVDLYLIHWPARMKKGSVGFNPENLLPLDIPSTWRAMEALYDSGKARAIGVC 158 (315)
Q Consensus 92 i~~~ve~sL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~L~~lk~~GkIr~iGvS 158 (315)
-+..+.+.|+.+....+|.+++..+++.. .+..+....++.|...| |+-+-++
T Consensus 50 ~R~~~~~ll~~~~~~~~d~ivv~~~~Rl~-------------R~~~~~~~~~~~l~~~g-i~l~~~~ 102 (137)
T cd00338 50 DRPGLQRLLADVKAGKIDVVLVEKLDRLS-------------RNLVDLLELLELLEAHG-VRVVTAD 102 (137)
T ss_pred CCHHHHHHHHHHHcCCCCEEEEEecchhh-------------CCHHHHHHHHHHHHHCC-CEEEEec
Confidence 36778888888877889999999998864 44667888888888775 4555544
No 182
>cd01967 Nitrogenase_MoFe_alpha_like Nitrogenase_MoFe_alpha_like: Nitrogenase MoFe protein, alpha subunit_like. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. Three genetically distinct types of nitrogenase systems are known to exist: a molybdenum-dependent nitrogenase (Mo-nitrogenase), a vanadium dependent nitrogenase (V-nitrogenase), and an iron-only nitrogenase (Fe-nitrogenase). These nitrogenase systems consist of component 1 (MoFe protein, VFe protein or, FeFe protein respectively) and, component 2 (Fe protein). This group contains the alpha subunit of component 1 of all three different forms. The most widespread and best characterized of these systems is the Mo-nitrogenase. MoFe is an alpha2beta2 tetramer, the alternative nitrogenases are alpha2beta2delta2 hexamers having alpha and beta subunits similar to the alpha and beta subunits of MoFe. The role of the delta subunit is unknown. For MoFe, each alphabeta pair of subunits contains one
Probab=31.17 E-value=4.5e+02 Score=24.67 Aligned_cols=109 Identities=16% Similarity=0.157 Sum_probs=63.5
Q ss_pred CCCCHHHHHHHHHHhhhcCCcCCCCeEEeeccCCCCCCCCcHHHHHHHHHHhcCCCccceEeeecCCCccCCCCCCCCCC
Q 021264 51 LYLNEKEIGFVLKKLFEDGVVKREDLWITSKLWCTDLAPKDVPEALDNTLQDLQIDYVDLYLIHWPARMKKGSVGFNPEN 130 (315)
Q Consensus 51 ~Ygse~~lG~~l~~~~~~~~~~R~~~~i~tK~~~~~~~~~~i~~~ve~sL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~ 130 (315)
.||.+..|-+++++..++. +++=++|.|-. ....--+.+..-+++.-++.+ +.++.+|.|.......
T Consensus 68 V~Gg~~~L~~~i~~~~~~~--~P~~i~v~~tC-~~~~iGdDi~~v~~~~~~~~~---~~vi~v~t~gf~g~~~------- 134 (406)
T cd01967 68 VFGGEKKLKKAIKEAYERF--PPKAIFVYSTC-PTGLIGDDIEAVAKEASKELG---IPVIPVNCEGFRGVSQ------- 134 (406)
T ss_pred eeCcHHHHHHHHHHHHHhC--CCCEEEEECCC-chhhhccCHHHHHHHHHHhhC---CCEEEEeCCCeeCCcc-------
Confidence 3677888888888765443 33435555544 344444556655555444554 7899999887643110
Q ss_pred CCCCCHHHHHHHHHHHH---------hcCCeeeEeecCCC--hhhHHHHHHhcCC
Q 021264 131 LLPLDIPSTWRAMEALY---------DSGKARAIGVCNFS--TKKLGDLLEIARV 174 (315)
Q Consensus 131 ~~~~~~~~~~~~L~~lk---------~~GkIr~iGvS~~~--~~~l~~~~~~~~~ 174 (315)
......++++|-+.. +++.|--||..++. .+.+.++++..++
T Consensus 135 --~~G~~~a~~al~~~l~~~~~~~~~~~~~VNiig~~~~~~d~~el~~lL~~~Gi 187 (406)
T cd01967 135 --SLGHHIANDAILDHLVGTKEPEEKTPYDVNIIGEYNIGGDAWVIKPLLEELGI 187 (406)
T ss_pred --cHHHHHHHHHHHHHhcCCCCcCCCCCCeEEEEeccccchhHHHHHHHHHHcCC
Confidence 022344555544432 34568888876653 3566777776654
No 183
>PF09370 TIM-br_sig_trns: TIM-barrel signal transduction protein; InterPro: IPR009215 Members of this family are predicted to have a TIM barrel fold, based on PSI-BLAST analysis (iteration 4) and on SCOP prediction (using SMART). Interestingly, this novel domain also exists as an N-terminal domain of sigma54-dependent transcriptional activators (enhancer-binding proteins). Because sigma54 dependent activators typically have a three-domain structure: the variable N-terminal regulatory (activation) domain involved in signal recognition/receiving, the central AAA-type ATPase domain, and the DNA-binding domain (see PIRSF003187 from PIRSF, PIRSF005263 from PIRSF, PIRSF003184 from PIRSF, PIRSF005263 from PIRSF, IPR014443 from INTERPRO for details), the proteins of the current entry may be predicted to play a role in signal recognition/receiving and signal transduction.; PDB: 2P10_C.
Probab=31.14 E-value=1.1e+02 Score=27.31 Aligned_cols=58 Identities=22% Similarity=0.275 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHhcCCeeeEeecCCCh-----hhHHHHHHhcCCCCcccccccCcccchHHHHHHHHHcCceEEEe
Q 021264 136 IPSTWRAMEALYDSGKARAIGVCNFST-----KKLGDLLEIARVPPAVNQVECHSSWQQQKLHAFCKSKGVHLSGY 206 (315)
Q Consensus 136 ~~~~~~~L~~lk~~GkIr~iGvS~~~~-----~~l~~~~~~~~~~~~~~q~~~n~~~~~~~~~~~~~~~gi~v~~~ 206 (315)
..+.-..|++||+.|- -||.||.. -+.++.++..+. -+.++-+++..|++.|+-.++|
T Consensus 94 ~~~~~~fl~~lk~~Gf---~GV~NfPTvgliDG~fR~~LEe~Gm----------gy~~EVemi~~A~~~gl~T~~y 156 (268)
T PF09370_consen 94 FRDMDRFLDELKELGF---SGVQNFPTVGLIDGQFRQNLEETGM----------GYDREVEMIRKAHEKGLFTTAY 156 (268)
T ss_dssp T--HHHHHHHHHHHT----SEEEE-S-GGG--HHHHHHHHHTT------------HHHHHHHHHHHHHTT-EE--E
T ss_pred CCcHHHHHHHHHHhCC---ceEEECCcceeeccHHHHHHHhcCC----------CHHHHHHHHHHHHHCCCeeeee
Confidence 3456778888998885 79999975 234555554442 1223346777777777766655
No 184
>TIGR03677 rpl7ae 50S ribosomal protein L7Ae. Multifunctional RNA-binding protein that recognizes the K-turn motif in ribosomal RNA, box H/ACA, box C/D and box C'/D' sRNAs. Interacts with protein L15e.
Probab=31.05 E-value=2.4e+02 Score=21.67 Aligned_cols=64 Identities=19% Similarity=0.220 Sum_probs=45.2
Q ss_pred HHHHHHHHHHHhcCCeeeEeecCCChhhHHHHHHhcCCCCcccccccCcccchHHHHHHHHHcCceEEEe
Q 021264 137 PSTWRAMEALYDSGKARAIGVCNFSTKKLGDLLEIARVPPAVNQVECHSSWQQQKLHAFCKSKGVHLSGY 206 (315)
Q Consensus 137 ~~~~~~L~~lk~~GkIr~iGvS~~~~~~l~~~~~~~~~~~~~~q~~~n~~~~~~~~~~~~~~~gi~v~~~ 206 (315)
..++..|...++.|++. . +..+..+.+.......+++--+.++.+-...+..+|++.+|+++-.
T Consensus 12 ~ki~~lL~la~ragkl~-~-----G~~~v~kaikkgka~LVilA~D~s~~~~~~~i~~lc~~~~Ip~~~~ 75 (117)
T TIGR03677 12 NKALEAVEKARETGKIK-K-----GTNEVTKAVERGIAKLVVIAEDVEPPEIVAHLPALCEEKGIPYVYV 75 (117)
T ss_pred HHHHHHHHHHHHcCCEe-E-----cHHHHHHHHHcCCccEEEEeCCCCcHHHHHHHHHHHHHcCCCEEEe
Confidence 56788889999999864 3 4456667777666666666666655443467888999999996543
No 185
>PRK13803 bifunctional phosphoribosylanthranilate isomerase/tryptophan synthase subunit beta; Provisional
Probab=31.01 E-value=3e+02 Score=27.78 Aligned_cols=89 Identities=15% Similarity=0.093 Sum_probs=50.1
Q ss_pred HHHhcCCCccceEeeecCCCccCCCCCCCCCCCCCCCHHH-HHHHHHHHHhcCCeeeEeec-CCChhhHHHHHHhcCCCC
Q 021264 99 TLQDLQIDYVDLYLIHWPARMKKGSVGFNPENLLPLDIPS-TWRAMEALYDSGKARAIGVC-NFSTKKLGDLLEIARVPP 176 (315)
Q Consensus 99 sL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~-~~~~L~~lk~~GkIr~iGvS-~~~~~~l~~~~~~~~~~~ 176 (315)
....+|.|++=+++...--+. .+.+. +-+....+ ....++.+||- |-+++.+.++.+. ..+
T Consensus 18 ~a~~~gaD~iGfIf~~~SpR~--------------V~~~~~a~~i~~~l-~~~~v~~VgVfv~~~~~~i~~~~~~--~~l 80 (610)
T PRK13803 18 KAVDMLPDFIGFIFYEKSPRF--------------VGNKFLAPNLEKAI-RKAGGRPVGVFVNESAKAMLKFSKK--NGI 80 (610)
T ss_pred HHHHcCCCEEEEEecCCCCCC--------------CCHHHHHHHHHHhC-CCCCCCEEEEEeCCCHHHHHHHHHh--cCC
Confidence 345689999988754421111 44444 33333333 22346779985 6677788777765 455
Q ss_pred cccccccCcccchHHHHHHHHHcCceEE
Q 021264 177 AVNQVECHSSWQQQKLHAFCKSKGVHLS 204 (315)
Q Consensus 177 ~~~q~~~n~~~~~~~~~~~~~~~gi~v~ 204 (315)
+++|++-.-.....+.++..++.++.++
T Consensus 81 d~vQLHG~e~~~~~~~~~~l~~~~~~ii 108 (610)
T PRK13803 81 DFVQLHGAESKAEPAYCQRIYKKSIKKI 108 (610)
T ss_pred CEEEECCCCCcccHHHHHHhhhcCCcEE
Confidence 8999986533111344444444455544
No 186
>COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=30.85 E-value=1.4e+02 Score=26.70 Aligned_cols=36 Identities=14% Similarity=0.187 Sum_probs=29.9
Q ss_pred CCHHHHHHHHHHHHhcCCeeeEeecCCChhhHHHHHHh
Q 021264 134 LDIPSTWRAMEALYDSGKARAIGVCNFSTKKLGDLLEI 171 (315)
Q Consensus 134 ~~~~~~~~~L~~lk~~GkIr~iGvS~~~~~~l~~~~~~ 171 (315)
+..+-.=++..++++.|. .|=+|+|..++++++++.
T Consensus 164 VN~elLk~~I~~lk~~Ga--tIifSsH~Me~vEeLCD~ 199 (300)
T COG4152 164 VNVELLKDAIFELKEEGA--TIIFSSHRMEHVEELCDR 199 (300)
T ss_pred hhHHHHHHHHHHHHhcCC--EEEEecchHHHHHHHhhh
Confidence 444555678899999999 689999999999999875
No 187
>PF00155 Aminotran_1_2: Aminotransferase class I and II 1-aminocyclopropane-1-carboxylate synthase signature aspartate aminotransferase signature; InterPro: IPR004839 Aminotransferases share certain mechanistic features with other pyridoxal-phosphate dependent enzymes, such as the covalent binding of the pyridoxal-phosphate group to a lysine residue. On the basis of sequence similarity, these various enzymes can be grouped [] into class I and class II. This entry includes proteins from both subfamilies.; GO: 0016769 transferase activity, transferring nitrogenous groups, 0030170 pyridoxal phosphate binding, 0009058 biosynthetic process; PDB: 3NRA_B 3P6K_B 3OP7_A 3ASB_A 3ASA_A 1W7M_A 3FVX_A 1W7N_A 3FVU_B 3FVS_A ....
Probab=30.80 E-value=4.1e+02 Score=24.09 Aligned_cols=51 Identities=8% Similarity=0.072 Sum_probs=28.2
Q ss_pred CCChhhHHHHHHhc-----CCCCcccccccCcccch------HHHHHHHHHcCceEEEecCC
Q 021264 159 NFSTKKLGDLLEIA-----RVPPAVNQVECHSSWQQ------QKLHAFCKSKGVHLSGYSPL 209 (315)
Q Consensus 159 ~~~~~~l~~~~~~~-----~~~~~~~q~~~n~~~~~------~~~~~~~~~~gi~v~~~~pl 209 (315)
..+.+.+++.++.. .....++..+.|+.-.. .+++++|+++|+-++.=...
T Consensus 129 ~~d~~~l~~~l~~~~~~~~~~~~v~~~~p~nPtG~~~~~~~l~~l~~~~~~~~~~ii~De~y 190 (363)
T PF00155_consen 129 HLDPEALEEALDELPSKGPRPKAVLICNPNNPTGSVLSLEELRELAELAREYNIIIIVDEAY 190 (363)
T ss_dssp EETHHHHHHHHHTSHTTTETEEEEEEESSBTTTTBB--HHHHHHHHHHHHHTTSEEEEEETT
T ss_pred cccccccccccccccccccccceeeecccccccccccccccccchhhhhcccccceeeeece
Confidence 45667777766653 11233333344443322 45677788888888874333
No 188
>TIGR02090 LEU1_arch isopropylmalate/citramalate/homocitrate synthases. Methanogens, then should and aparrently do contain all three of these enzymes. Unfortunately, phylogenetic trees do not resolve into three unambiguous clades, making assignment of function to particular genes problematic. Other archaea which lack a threonine dehydratase (mainly Euryarchaeota) should contain both a CimA and a LeuA gene. This is true of, for example, archaeoglobus fulgidis, but not for the Pyrococci which have none in this clade, but one in TIGR00973 and one in TIGRT00977 which may fulfill these roles. Other species which have only one hit to this model and lack threonine dehydratase are very likely LeuA enzymes.
Probab=30.76 E-value=4.5e+02 Score=24.53 Aligned_cols=125 Identities=15% Similarity=0.193 Sum_probs=64.0
Q ss_pred EcCCCCccCccccccCcCCcchHHHHHHHHHHhCCcEEecCCCCCCHHHHHHHHHHhhhcCCcCCCCeEEeeccCCCCCC
Q 021264 9 ELNTGAKMPSVGLGTWQADPGIVGNAVDVAIKAGYRHIDCARLYLNEKEIGFVLKKLFEDGVVKREDLWITSKLWCTDLA 88 (315)
Q Consensus 9 ~l~tg~~vs~lglG~~~~~~~~~~~~l~~A~~~Gi~~~DtA~~Ygse~~lG~~l~~~~~~~~~~R~~~~i~tK~~~~~~~ 88 (315)
+|+.|...+.+ .++.++..++++..-+.||..++....-.++.- -++++...+.+ .+.++...+.
T Consensus 7 TLRDG~Q~~~~-----~~s~~~k~~ia~~L~~~Gv~~IEvG~p~~~~~~-~e~i~~i~~~~--~~~~v~~~~r------- 71 (363)
T TIGR02090 7 TLRDGEQTPGV-----SLTVEQKVEIARKLDELGVDVIEAGFPIASEGE-FEAIKKISQEG--LNAEICSLAR------- 71 (363)
T ss_pred CCCCcCCCCCC-----CCCHHHHHHHHHHHHHcCCCEEEEeCCCCChHH-HHHHHHHHhcC--CCcEEEEEcc-------
Confidence 34566666543 345588889999999999999997643333322 24454442222 2333322221
Q ss_pred CCcHHHHHHHHHHhcCCCccceEeeecCCCccCCCCCCCCCCCCCCC----HHHHHHHHHHHHhcCCeeeEeecCC
Q 021264 89 PKDVPEALDNTLQDLQIDYVDLYLIHWPARMKKGSVGFNPENLLPLD----IPSTWRAMEALYDSGKARAIGVCNF 160 (315)
Q Consensus 89 ~~~i~~~ve~sL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~----~~~~~~~L~~lk~~GkIr~iGvS~~ 160 (315)
..++.++.+++ .|++.+.++.==++.... ..+... ++.+.+.++.+++.|.--.+++...
T Consensus 72 --~~~~di~~a~~-~g~~~i~i~~~~Sd~~~~---------~~~~~~~~~~~~~~~~~i~~ak~~G~~v~~~~eda 135 (363)
T TIGR02090 72 --ALKKDIDKAID-CGVDSIHTFIATSPIHLK---------YKLKKSRDEVLEKAVEAVEYAKEHGLIVEFSAEDA 135 (363)
T ss_pred --cCHHHHHHHHH-cCcCEEEEEEcCCHHHHH---------HHhCCCHHHHHHHHHHHHHHHHHcCCEEEEEEeec
Confidence 12455555543 466655554321111000 000022 3445567777788887555665443
No 189
>KOG2367 consensus Alpha-isopropylmalate synthase/homocitrate synthase [Amino acid transport and metabolism]
Probab=30.71 E-value=3.3e+02 Score=26.58 Aligned_cols=88 Identities=16% Similarity=0.137 Sum_probs=59.5
Q ss_pred CCcchHHHHHHHHHHhCCcEEecCCCCC--CHHHHHHHHHHhhhcCCcCCCCeEEeeccCCCCCCCCcHHHHHHHHHHhc
Q 021264 26 ADPGIVGNAVDVAIKAGYRHIDCARLYL--NEKEIGFVLKKLFEDGVVKREDLWITSKLWCTDLAPKDVPEALDNTLQDL 103 (315)
Q Consensus 26 ~~~~~~~~~l~~A~~~Gi~~~DtA~~Yg--se~~lG~~l~~~~~~~~~~R~~~~i~tK~~~~~~~~~~i~~~ve~sL~~L 103 (315)
.+.+-+.+++.+....|.+.|-.++--| +....|.-++- ++.++..|+++.|++.+.. |. .+--+-..+=..-
T Consensus 201 se~~fl~eI~~aV~Kag~~tvnipdTVgia~P~~y~dLI~y-~~tn~~~~e~v~Is~HcHN-D~---G~a~Ant~~g~~A 275 (560)
T KOG2367|consen 201 SELEFLLEILGAVIKAGVTTVNIPDTVGIATPNEYGDLIEY-LKTNTPGREKVCISTHCHN-DL---GCATANTELGLLA 275 (560)
T ss_pred CcHHHHHHHHHHHHHhCCccccCcceecccChHHHHHHHHH-HHccCCCceeEEEEEeecC-Cc---cHHHHHHHHHhhc
Confidence 4667788999999999999998888777 45566666543 3335456999999999832 22 1222333333445
Q ss_pred CCCccceEeeecCCC
Q 021264 104 QIDYVDLYLIHWPAR 118 (315)
Q Consensus 104 g~d~iDl~~lH~p~~ 118 (315)
|-++||.-++-.=.+
T Consensus 276 GA~~VE~~i~GiGER 290 (560)
T KOG2367|consen 276 GARQVEVTINGIGER 290 (560)
T ss_pred CcceEEEEeeccccc
Confidence 778999888765433
No 190
>cd07938 DRE_TIM_HMGL 3-hydroxy-3-methylglutaryl-CoA lyase, catalytic TIM barrel domain. 3-hydroxy-3-methylglutaryl-CoA lyase (HMGL) catalyzes the cleavage of HMG-CoA to acetyl-CoA and acetoacetate, one of the terminal steps in ketone body generation and leucine degradation, and is a key enzyme in the pathway that supplies metabolic fuel to extrahepatic tissues. Mutations in HMGL cause a human autosomal recessive disorder called primary metabolic aciduria that affects ketogenesis and leucine catabolism and can be fatal due to an inability to tolerate hypoglycemia. HMGL has a TIM barrel domain with a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. The cleavage of HMG-CoA requires the presence of a divalent cation like Mg2+ or Mn2+, and the reaction is thought to involve general acid/base catalysis. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropy
Probab=30.60 E-value=2.3e+02 Score=25.30 Aligned_cols=99 Identities=11% Similarity=0.119 Sum_probs=56.6
Q ss_pred cHHHHHHHHHHhcCCCccceEeeecCCCccCCCCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeeEeecCCChhhHHHHHH
Q 021264 91 DVPEALDNTLQDLQIDYVDLYLIHWPARMKKGSVGFNPENLLPLDIPSTWRAMEALYDSGKARAIGVCNFSTKKLGDLLE 170 (315)
Q Consensus 91 ~i~~~ve~sL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~L~~lk~~GkIr~iGvS~~~~~~l~~~~~ 170 (315)
.-+..+-+.|.++|+++|++-.+-.|... +.- .+.+++...+... ..++..++. -+...++.+++
T Consensus 20 e~K~~i~~~L~~~Gv~~IEvGs~~~~~~~-p~~----------~d~~~~~~~l~~~---~~~~~~~~~-~~~~dv~~A~~ 84 (274)
T cd07938 20 EDKIELIDALSAAGLRRIEVTSFVSPKWV-PQM----------ADAEEVLAGLPRR---PGVRYSALV-PNLRGAERALA 84 (274)
T ss_pred HHHHHHHHHHHHcCCCEEEeCCCCCcccc-ccc----------CCHHHHHhhcccC---CCCEEEEEC-CCHHHHHHHHH
Confidence 35678888899999999999744333321 110 2334444444432 246666665 45667777776
Q ss_pred hcCCCCcccccccCcccc--------------hHHHHHHHHHcCceEEE
Q 021264 171 IARVPPAVNQVECHSSWQ--------------QQKLHAFCKSKGVHLSG 205 (315)
Q Consensus 171 ~~~~~~~~~q~~~n~~~~--------------~~~~~~~~~~~gi~v~~ 205 (315)
.. .+...+-++.|..+. -.+.+++++++|+.+..
T Consensus 85 ~g-~~~i~i~~~~Sd~~~~~~~~~s~~~~~~~~~~~v~~ak~~G~~v~~ 132 (274)
T cd07938 85 AG-VDEVAVFVSASETFSQKNINCSIAESLERFEPVAELAKAAGLRVRG 132 (274)
T ss_pred cC-cCEEEEEEecCHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCCeEEE
Confidence 43 222222222222211 14568899999998863
No 191
>COG2089 SpsE Sialic acid synthase [Cell envelope biogenesis, outer membrane]
Probab=30.54 E-value=4e+02 Score=24.69 Aligned_cols=178 Identities=15% Similarity=0.129 Sum_probs=92.5
Q ss_pred CCeEEeeccC-CCCCCCCcHHHHHHHHHHhcCCCccceEeeecCCCccCCCCCCCCCCCCCCCHHHHHHHHHHHHhcCCe
Q 021264 74 EDLWITSKLW-CTDLAPKDVPEALDNTLQDLQIDYVDLYLIHWPARMKKGSVGFNPENLLPLDIPSTWRAMEALYDSGKA 152 (315)
Q Consensus 74 ~~~~i~tK~~-~~~~~~~~i~~~ve~sL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~L~~lk~~GkI 152 (315)
.+.||..-++ .++.+-+...+.++..-+ -|.|-|=+=..+.++...... -....+|
T Consensus 13 ~~~~iIAEig~NHnG~le~A~~lIdaAk~-aGADavKfQt~~~~d~~t~~~----------------------~~~~~~i 69 (347)
T COG2089 13 KKPFIIAEIGANHNGDLERAKELIDAAKE-AGADAVKFQTFYTPDIMTLES----------------------KNVPFKI 69 (347)
T ss_pred CCcEEEeeecccccCcHHHHHHHHHHHHH-cCcceeeeecccccccccccc----------------------cCCcccc
Confidence 4555555554 456666666666666655 675544433334444432110 0111233
Q ss_pred eeEeecCCChhhHHHHHHhcCCCCcccccccCcccchHHHHHHHHHcCceEEEecCCCCCCCCCCccccCCchHHHHHHH
Q 021264 153 RAIGVCNFSTKKLGDLLEIARVPPAVNQVECHSSWQQQKLHAFCKSKGVHLSGYSPLGSPGTRWIKSDVLRHPVLKTAAE 232 (315)
Q Consensus 153 r~iGvS~~~~~~l~~~~~~~~~~~~~~q~~~n~~~~~~~~~~~~~~~gi~v~~~~pl~~gg~~~~~~~~~~~~~l~~la~ 232 (315)
. ..+....+-++.+.+.. ++....++.++|++.||.++. +|+... -..+..
T Consensus 70 ~----~~~~~~slyel~e~~~~----------p~e~~~~Lke~a~~~Gi~~~S-SPfd~~--------------svd~l~ 120 (347)
T COG2089 70 K----TLWDKVSLYELYEEAET----------PLEWHAQLKEYARKRGIIFFS-SPFDLT--------------AVDLLE 120 (347)
T ss_pred c----cccccccHHHHHHHhcC----------CHHHHHHHHHHHHHcCeEEEe-cCCCHH--------------HHHHHH
Confidence 3 23334455555555443 223347899999999999887 788542 111222
Q ss_pred HhCCCH---------HHHHHHHHhhcC--CeeecCCCCHHHHHHhhcccC---------------cccCHHHHH--HHHh
Q 021264 233 KLGKTP---------AQVALRWGLQMG--HSVLPKSTNEARIKENFDIFD---------------WSISEDLFV--KFSE 284 (315)
Q Consensus 233 ~~~~s~---------aq~al~~~l~~~--~~~i~G~~~~~~l~~nl~a~~---------------~~Lt~e~~~--~l~~ 284 (315)
+++.+. ---.|.|+.+.+ ...-.|+.+.+++++.++.+. .|-+.|++. .|-.
T Consensus 121 ~~~~~ayKIaS~E~~~~plik~iA~~~kPiIlSTGma~~~ei~~av~~~r~~g~~~i~LLhC~s~YPap~ed~NL~~i~~ 200 (347)
T COG2089 121 SLNPPAYKIASGEINDLPLIKYIAKKGKPIILSTGMATIEEIEEAVAILRENGNPDIALLHCTSAYPAPFEDVNLKAIPK 200 (347)
T ss_pred hcCCCeEEecCccccChHHHHHHHhcCCCEEEEcccccHHHHHHHHHHHHhcCCCCeEEEEecCCCCCCHHHhhHHHHHH
Confidence 222210 112355555544 444579999999988876442 234455443 3445
Q ss_pred chhhhhcccccccccCCCCc
Q 021264 285 IEQARLIRGTAYVHDTFGSY 304 (315)
Q Consensus 285 ~~~~~~~~g~~~~~~~~~~~ 304 (315)
+...+.+. -++-+|+.|-.
T Consensus 201 l~~~Fn~~-vGlSDHT~g~~ 219 (347)
T COG2089 201 LAEAFNAI-VGLSDHTLGIL 219 (347)
T ss_pred HHHHhCCc-cccccCccchh
Confidence 44434333 34667766643
No 192
>PF01207 Dus: Dihydrouridine synthase (Dus); InterPro: IPR001269 Members of this family catalyse the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archae. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. Dus 1 (P53759 from SWISSPROT) from Saccharomyces cerevisiae (Baker's yeast) acts on pre-tRNA-Phe, while Dus 2 (P53720 from SWISSPROT) acts on pre-tRNA-Tyr and pre-tRNA-Leu. Dus 1 is active as a single subunit, requiring NADPH or NADH, and is stimulated by the presence of FAD []. Some family members may be targeted to the mitochondria and even have a role in mitochondria []. ; GO: 0017150 tRNA dihydrouridine synthase activity, 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing, 0055114 oxidation-reduction process; PDB: 1VHN_A 3B0P_A 3B0V_D 3B0U_Y.
Probab=30.53 E-value=2.1e+02 Score=26.03 Aligned_cols=126 Identities=17% Similarity=0.251 Sum_probs=65.8
Q ss_pred CCcchHHHHHHHHHHhCCcEEe----------cCCCCC-----CHHHHHHHHHHhhhcCCcCCCCeEEeeccCCCCCCCC
Q 021264 26 ADPGIVGNAVDVAIKAGYRHID----------CARLYL-----NEKEIGFVLKKLFEDGVVKREDLWITSKLWCTDLAPK 90 (315)
Q Consensus 26 ~~~~~~~~~l~~A~~~Gi~~~D----------tA~~Yg-----se~~lG~~l~~~~~~~~~~R~~~~i~tK~~~~~~~~~ 90 (315)
.+++...+....+.+.|+..+| +...|| ....+.+.++...+.- .-.+.+-++++.. .+++
T Consensus 63 ~~~~~~~~aa~~~~~~~~~~IDlN~GCP~~~v~~~g~Ga~Ll~~p~~~~~iv~~~~~~~---~~pvsvKiR~g~~-~~~~ 138 (309)
T PF01207_consen 63 NDPEDLAEAAEIVAELGFDGIDLNMGCPAPKVTKGGAGAALLKDPDLLAEIVKAVRKAV---PIPVSVKIRLGWD-DSPE 138 (309)
T ss_dssp S-HHHHHHHHHHHCCTT-SEEEEEE---SHHHHHCT-GGGGGC-HHHHHHHHHHHHHH----SSEEEEEEESECT---CH
T ss_pred ccHHHHHHHHHhhhccCCcEEeccCCCCHHHHhcCCcChhhhcChHHhhHHHHhhhccc---ccceEEecccccc-cchh
Confidence 4667777777777788999999 345577 2556666666542211 2234444444432 1232
Q ss_pred cHHHHHHHHHHhcCCCccceEeeecCCCccCCCCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeeEeecC-CChhhHHHHH
Q 021264 91 DVPEALDNTLQDLQIDYVDLYLIHWPARMKKGSVGFNPENLLPLDIPSTWRAMEALYDSGKARAIGVCN-FSTKKLGDLL 169 (315)
Q Consensus 91 ~i~~~ve~sL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~L~~lk~~GkIr~iGvS~-~~~~~l~~~~ 169 (315)
. ...+-+.|...| +|.+.+|.-..... .....-|+.+.++++.=.|--||=.+ ++.+++.+.+
T Consensus 139 ~-~~~~~~~l~~~G---~~~i~vH~Rt~~q~------------~~~~a~w~~i~~i~~~~~ipvi~NGdI~s~~d~~~~~ 202 (309)
T PF01207_consen 139 E-TIEFARILEDAG---VSAITVHGRTRKQR------------YKGPADWEAIAEIKEALPIPVIANGDIFSPEDAERML 202 (309)
T ss_dssp H-HHHHHHHHHHTT-----EEEEECS-TTCC------------CTS---HHHHHHCHHC-TSEEEEESS--SHHHHHHHC
T ss_pred H-HHHHHHHhhhcc---cceEEEecCchhhc------------CCcccchHHHHHHhhcccceeEEcCccCCHHHHHHHH
Confidence 2 334555677777 89999997544211 22245688888888887776666444 3455555554
Q ss_pred Hh
Q 021264 170 EI 171 (315)
Q Consensus 170 ~~ 171 (315)
+.
T Consensus 203 ~~ 204 (309)
T PF01207_consen 203 EQ 204 (309)
T ss_dssp CC
T ss_pred Hh
Confidence 43
No 193
>PRK09613 thiH thiamine biosynthesis protein ThiH; Reviewed
Probab=30.45 E-value=1.6e+02 Score=28.77 Aligned_cols=108 Identities=17% Similarity=0.190 Sum_probs=60.8
Q ss_pred CCCcHHHHHHHHHHhcCCCccceEeeecCCCccCCCCCCCCCCCCCCCHHHHHHHHHHHHh----cCCeeeEeec--CCC
Q 021264 88 APKDVPEALDNTLQDLQIDYVDLYLIHWPARMKKGSVGFNPENLLPLDIPSTWRAMEALYD----SGKARAIGVC--NFS 161 (315)
Q Consensus 88 ~~~~i~~~ve~sL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~L~~lk~----~GkIr~iGvS--~~~ 161 (315)
+++.+.+.++. ++..|...+-|+.=..|. . .+.+-+.+.++.+++ .|.++.++++ ..+
T Consensus 116 s~EEI~~ea~~-~~~~G~~~i~LvsGe~p~----~-----------~~~eyi~e~i~~I~~~~~~~g~i~~v~inig~lt 179 (469)
T PRK09613 116 TQEEIREEVKA-LEDMGHKRLALVAGEDPP----N-----------CDIEYILESIKTIYSTKHGNGEIRRVNVNIAPTT 179 (469)
T ss_pred CHHHHHHHHHH-HHHCCCCEEEEEeCCCCC----C-----------CCHHHHHHHHHHHHHhccccCcceeeEEEeecCC
Confidence 34556666654 467776655443111111 1 456667777777775 5667766654 356
Q ss_pred hhhHHHHHHhcCCCCcccccccC-----cccc---------hHHHHHHHHHcCceEEEecCCCC
Q 021264 162 TKKLGDLLEIARVPPAVNQVECH-----SSWQ---------QQKLHAFCKSKGVHLSGYSPLGS 211 (315)
Q Consensus 162 ~~~l~~~~~~~~~~~~~~q~~~n-----~~~~---------~~~~~~~~~~~gi~v~~~~pl~~ 211 (315)
.+++.++.+..-....++|=-|| -+++ +-+.++.|++.|+.-++.+.|.+
T Consensus 180 ~eey~~LkeaGv~~~~l~qETY~~ety~~~hp~g~k~~y~~Rl~t~~rA~~aGi~~Vg~G~L~G 243 (469)
T PRK09613 180 VENYKKLKEAGIGTYQLFQETYHKPTYEKMHPSGPKSDYDWRLTAMDRAMEAGIDDVGIGVLFG 243 (469)
T ss_pred HHHHHHHHHcCCCEEEeccccCCHHHHHhcCCCCCCCCHHHHHHHHHHHHHcCCCeeCeEEEEc
Confidence 67777777654322333443332 1111 13578889999998666655543
No 194
>PRK06361 hypothetical protein; Provisional
Probab=30.15 E-value=3.3e+02 Score=22.86 Aligned_cols=181 Identities=17% Similarity=0.124 Sum_probs=88.6
Q ss_pred chHHHHHHHHHHhCCcEEecCCCCC--C-HHHH---HHHHHHhhhcCCcCCCCeEEeeccCCCCCCCCcHHHHHHHHHHh
Q 021264 29 GIVGNAVDVAIKAGYRHIDCARLYL--N-EKEI---GFVLKKLFEDGVVKREDLWITSKLWCTDLAPKDVPEALDNTLQD 102 (315)
Q Consensus 29 ~~~~~~l~~A~~~Gi~~~DtA~~Yg--s-e~~l---G~~l~~~~~~~~~~R~~~~i~tK~~~~~~~~~~i~~~ve~sL~~ 102 (315)
....++++.|.+.|+..+=.+++.. + ...+ -+..++. +.. ..=+++.-.-+.. ..++. ...+.+.+.+
T Consensus 10 ~~~~e~v~~A~~~Gl~~i~iTDH~~~~~~~~~~~~~~~~~~~~-~~~--~~i~v~~GiE~~~--~~~~~-~~~~~~~~~~ 83 (212)
T PRK06361 10 LIPSELVRRARVLGYRAIAITDHADASNLEEILEKLVRAAEEL-ELY--WDIEVIPGVELTH--VPPKL-IPKLAKKARD 83 (212)
T ss_pred CCHHHHHHHHHHcCCCEEEEecCCCCccHHHHHHHHHHHHHHH-hhc--CCCEEEEEEEEcc--cCchh-hchHHHHHHH
Confidence 4478999999999999877776653 1 1111 1111111 000 1112333333321 22222 3334455556
Q ss_pred cCCCccceEeeecCCCccCCCCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeeEeecC-CChhhHHHHHHhcCCCCccccc
Q 021264 103 LQIDYVDLYLIHWPARMKKGSVGFNPENLLPLDIPSTWRAMEALYDSGKARAIGVCN-FSTKKLGDLLEIARVPPAVNQV 181 (315)
Q Consensus 103 Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~L~~lk~~GkIr~iGvS~-~~~~~l~~~~~~~~~~~~~~q~ 181 (315)
++ .|+..+|...... +. ....-.++.+.|.+.-+|=-. .....+ +++...+. .+.+
T Consensus 84 ~~---~~~~svH~~~~~~--------------~~--~~~~~~~a~~~~~~dvlaHpd~~~~~~~-~~~~~~~~---~lEi 140 (212)
T PRK06361 84 LG---AEIVVVHGETIVE--------------PV--EEGTNLAAIECEDVDILAHPGLITEEEA-ELAAENGV---FLEI 140 (212)
T ss_pred CC---CEEEEECCCCcch--------------hh--hhhhHHHHHhCCCCcEecCcchhhHHHH-HHHHHcCe---EEEE
Confidence 64 6667899432210 00 001114466778766555111 111222 22222222 2222
Q ss_pred cc--CcccchHHHHHHHHHcCceEEEecCCCCCCCCCCccccCCchHHHHHHHHhCCCHHHHHHH
Q 021264 182 EC--HSSWQQQKLHAFCKSKGVHLSGYSPLGSPGTRWIKSDVLRHPVLKTAAEKLGKTPAQVALR 244 (315)
Q Consensus 182 ~~--n~~~~~~~~~~~~~~~gi~v~~~~pl~~gg~~~~~~~~~~~~~l~~la~~~~~s~aq~al~ 244 (315)
+. ....+...+++.+++.|+.++.-+....- .++...+.+..++.+.+.+..++--.
T Consensus 141 n~~~~~~~~~~~~l~~a~~~gi~vv~~SDaH~~------~d~~~~~~~~~i~~~~gl~~~~v~~~ 199 (212)
T PRK06361 141 TARKGHSLTNGHVARIAREAGAPLVINTDTHAP------SDLITYEFARKVALGAGLTEKELEEA 199 (212)
T ss_pred ECCCCcccchHHHHHHHHHhCCcEEEECCCCCH------HHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 22 11122367899999999998877766431 23334456677777777777665433
No 195
>PRK02901 O-succinylbenzoate synthase; Provisional
Probab=30.10 E-value=4e+02 Score=24.56 Aligned_cols=68 Identities=9% Similarity=-0.048 Sum_probs=36.5
Q ss_pred HHHHHHHHhcCCee-eEeecCCChhhHHHHHHhcCCCCcccccccCcccchHHHHHHHHHcCceEEEecCC
Q 021264 140 WRAMEALYDSGKAR-AIGVCNFSTKKLGDLLEIARVPPAVNQVECHSSWQQQKLHAFCKSKGVHLSGYSPL 209 (315)
Q Consensus 140 ~~~L~~lk~~GkIr-~iGvS~~~~~~l~~~~~~~~~~~~~~q~~~n~~~~~~~~~~~~~~~gi~v~~~~pl 209 (315)
++.+.+++++-.|. +.|=|-++.....++++... .+++|+..+.+---.+.++.|+.+|+.++..+.+
T Consensus 173 ~~~la~Lr~~~~vPIA~DEs~~~~~d~~~l~~~~a--~dvi~ik~~~~GGit~~lkiA~~~gi~v~v~s~~ 241 (327)
T PRK02901 173 VEELAELRRRVGVPIAADESIRRAEDPLRVARAGA--ADVAVLKVAPLGGVRAALDIAEQIGLPVVVSSAL 241 (327)
T ss_pred HHHHHHHHHhCCCCEEeCCCCCCHHHHHHHHHcCC--CCEEEeCcchhCCHHHHHHHHHHcCCcEEEeCCc
Confidence 44455554443222 33444455555555554322 3566666554443355666777777777777555
No 196
>PF08303 tRNA_lig_kinase: tRNA ligase kinase domain; InterPro: IPR015966 This entry represents a kinase domain found in fungal tRNA ligases []. Please see the following relevant references: [, ].; GO: 0003972 RNA ligase (ATP) activity, 0005524 ATP binding, 0006388 tRNA splicing, via endonucleolytic cleavage and ligation
Probab=30.09 E-value=3.1e+02 Score=22.67 Aligned_cols=63 Identities=13% Similarity=0.175 Sum_probs=34.2
Q ss_pred HHHHHHHHHhcCCCccceEeeecCCCccCCCCCCCCCCCCCCCHHHHHHHHHHHHh-----cCCeeeEeecCCChhhHHH
Q 021264 93 PEALDNTLQDLQIDYVDLYLIHWPARMKKGSVGFNPENLLPLDIPSTWRAMEALYD-----SGKARAIGVCNFSTKKLGD 167 (315)
Q Consensus 93 ~~~ve~sL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~L~~lk~-----~GkIr~iGvS~~~~~~l~~ 167 (315)
.+-++.+|+.|.-+.-++++....+... ....++++.+++++. ...+|+|+++-.....+.+
T Consensus 40 ~~f~~~~l~~L~~~~~~vViaDRNNh~~-------------reR~ql~~~~~~~~~~yl~~~~~~r~VaL~fv~~~~~~~ 106 (168)
T PF08303_consen 40 PKFIKAVLELLAKDTHPVVIADRNNHQK-------------RERKQLFEDVSQLKPDYLPYDTNVRFVALNFVHDDDLDE 106 (168)
T ss_pred HHHHHHHHHHHhhCCCCEEEEeCCCchH-------------HHHHHHHHHHHHhcccccccCCCeEEEEEEccCCCCHHH
Confidence 3445555666643446666665544322 335566777777666 4566777766544333333
Q ss_pred H
Q 021264 168 L 168 (315)
Q Consensus 168 ~ 168 (315)
+
T Consensus 107 i 107 (168)
T PF08303_consen 107 I 107 (168)
T ss_pred H
Confidence 3
No 197
>cd03321 mandelate_racemase Mandelate racemase (MR) catalyzes the Mg2+-dependent 1,1-proton transfer reaction that interconverts the enantiomers of mandelic acid. MR is the first enzyme in the bacterial pathway that converts mandelic acid to benzoic acid and allows this pathway to utilize either enantiomer of mandelate. MR belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=30.08 E-value=1.2e+02 Score=28.09 Aligned_cols=64 Identities=8% Similarity=0.073 Sum_probs=37.6
Q ss_pred HHHHHHHHhcCCee-eEeecCCChhhHHHHHHhcCCCCcccccccCccc---chHHHHHHHHHcCceEEE
Q 021264 140 WRAMEALYDSGKAR-AIGVCNFSTKKLGDLLEIARVPPAVNQVECHSSW---QQQKLHAFCKSKGVHLSG 205 (315)
Q Consensus 140 ~~~L~~lk~~GkIr-~iGvS~~~~~~l~~~~~~~~~~~~~~q~~~n~~~---~~~~~~~~~~~~gi~v~~ 205 (315)
++.+.+|++.--|. ..|=+.++...+..+++... .+++|...+.+- ...++...|+.+|+.++.
T Consensus 226 ~~~~~~l~~~~~ipia~~E~~~~~~~~~~~i~~~~--~d~i~~~~~~~GGit~~~~ia~~A~~~gi~~~~ 293 (355)
T cd03321 226 YEGHARIASALRTPVQMGENWLGPEEMFKALSAGA--CDLVMPDLMKIGGVTGWLRASALAEQAGIPMSS 293 (355)
T ss_pred HHHHHHHHHhcCCCEEEcCCCcCHHHHHHHHHhCC--CCeEecCHhhhCCHHHHHHHHHHHHHcCCeecc
Confidence 45566666553322 34555566777777666433 366666655432 125677888888887753
No 198
>PF07287 DUF1446: Protein of unknown function (DUF1446); InterPro: IPR010839 This family consists of several bacterial and plant proteins of around 400 residues in length. The function of this family is unknown.
Probab=29.83 E-value=1.6e+02 Score=27.69 Aligned_cols=90 Identities=14% Similarity=0.145 Sum_probs=51.1
Q ss_pred HHHHHHHHHHHhcCCeeeEeecCCChhhHHHHHHhcCCCCcccccccCcccch--HHHHHHHHHcCceEEEecCCCCCCC
Q 021264 137 PSTWRAMEALYDSGKARAIGVCNFSTKKLGDLLEIARVPPAVNQVECHSSWQQ--QKLHAFCKSKGVHLSGYSPLGSPGT 214 (315)
Q Consensus 137 ~~~~~~L~~lk~~GkIr~iGvS~~~~~~l~~~~~~~~~~~~~~q~~~n~~~~~--~~~~~~~~~~gi~v~~~~pl~~gg~ 214 (315)
.+-.+++.+|.+.|.+.+|-.---..-.+..+...-...|. --|.....+ ..+++.|+++||.|+..+ ||.
T Consensus 9 gD~~~a~~~l~~~g~~d~l~~d~LaE~tma~~~~~~~~~p~---~gY~~~~~~~L~~~L~~~~~~gIkvI~Na----Gg~ 81 (362)
T PF07287_consen 9 GDRPDAAVRLARGGDVDYLVGDYLAERTMAILARAKRKDPT---KGYAPDFVRDLRPLLPAAAEKGIKVITNA----GGL 81 (362)
T ss_pred cCcHHHHHHHHhcCCCCEEEEecHHHHHHHHHHHHHhhCCC---CCchHHHHHHHHHHHHHHHhCCCCEEEeC----CCC
Confidence 44567788888899999987655443333222211111111 112222222 678999999999999873 222
Q ss_pred CCCccccCCchHHHHHHHHhCCC
Q 021264 215 RWIKSDVLRHPVLKTAAEKLGKT 237 (315)
Q Consensus 215 ~~~~~~~~~~~~l~~la~~~~~s 237 (315)
. +.-..+.+++++++.|++
T Consensus 82 n----p~~~a~~v~eia~e~Gl~ 100 (362)
T PF07287_consen 82 N----PAGCADIVREIARELGLS 100 (362)
T ss_pred C----HHHHHHHHHHHHHhcCCC
Confidence 1 112345677777776654
No 199
>PRK14041 oxaloacetate decarboxylase; Provisional
Probab=29.65 E-value=5.4e+02 Score=25.11 Aligned_cols=141 Identities=10% Similarity=0.031 Sum_probs=0.0
Q ss_pred HHHHHHHHHhcCCCccce---------EeeecCCCccCCCCCCCCCCCCCCCHHHHHHHHHHHHhcCCeee-------Ee
Q 021264 93 PEALDNTLQDLQIDYVDL---------YLIHWPARMKKGSVGFNPENLLPLDIPSTWRAMEALYDSGKARA-------IG 156 (315)
Q Consensus 93 ~~~ve~sL~~Lg~d~iDl---------~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~L~~lk~~GkIr~-------iG 156 (315)
+..+-+.|.++|++.|++ +-+..+++ .+.++.+.+....-++.. +|
T Consensus 27 kl~Ia~~Ld~~Gv~~IE~~ggatfd~~~~Fl~e~p------------------~e~l~~l~~~~~~~~l~~l~r~~N~~G 88 (467)
T PRK14041 27 MLPALEAFDRMGFYSMEVWGGATFDVCVRFLNENP------------------WERLKEIRKRLKNTKIQMLLRGQNLVG 88 (467)
T ss_pred HHHHHHHHHHcCCCEEEecCCccchhhhcccCCCH------------------HHHHHHHHHhCCCCEEEEEeccccccC
Q ss_pred ecCCChhhHHHHHHhc---CCCCcccccccCcccchHHHHHHHHHcCceEEEecCCCCCCCCCCccccCCchHHHHHHHH
Q 021264 157 VCNFSTKKLGDLLEIA---RVPPAVNQVECHSSWQQQKLHAFCKSKGVHLSGYSPLGSPGTRWIKSDVLRHPVLKTAAEK 233 (315)
Q Consensus 157 vS~~~~~~l~~~~~~~---~~~~~~~q~~~n~~~~~~~~~~~~~~~gi~v~~~~pl~~gg~~~~~~~~~~~~~l~~la~~ 233 (315)
..++..+.++.+++.+ +++..-+-...|-...-...+++++++|..+.+.-....+ +....+.+.+++++
T Consensus 89 ~~~~~dDvv~~fv~~A~~~Gvd~irif~~lnd~~n~~~~i~~ak~~G~~v~~~i~~t~~-------p~~t~e~~~~~a~~ 161 (467)
T PRK14041 89 YRHYADDVVELFVKKVAEYGLDIIRIFDALNDIRNLEKSIEVAKKHGAHVQGAISYTVS-------PVHTLEYYLEFARE 161 (467)
T ss_pred cccccchhhHHHHHHHHHCCcCEEEEEEeCCHHHHHHHHHHHHHHCCCEEEEEEEeccC-------CCCCHHHHHHHHHH
Q ss_pred hCCCHHHHHHHHHhhcC-Ceeec----CCCCHHHHHHhhccc
Q 021264 234 LGKTPAQVALRWGLQMG-HSVLP----KSTNEARIKENFDIF 270 (315)
Q Consensus 234 ~~~s~aq~al~~~l~~~-~~~i~----G~~~~~~l~~nl~a~ 270 (315)
+...| ..+.+ |.-+|.++.+.+.++
T Consensus 162 ------------l~~~Gad~I~i~Dt~G~l~P~~v~~Lv~~l 191 (467)
T PRK14041 162 ------------LVDMGVDSICIKDMAGLLTPKRAYELVKAL 191 (467)
T ss_pred ------------HHHcCCCEEEECCccCCcCHHHHHHHHHHH
No 200
>PRK14460 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=29.44 E-value=3.3e+02 Score=25.38 Aligned_cols=142 Identities=12% Similarity=0.112 Sum_probs=75.1
Q ss_pred HHHHHHHHHHhhhc-CC-cCCCCeEEeeccCCCCCCCCcHHHHHHHHHHhcCCCccceEeeecCCCccCCCCCCCCCCCC
Q 021264 55 EKEIGFVLKKLFED-GV-VKREDLWITSKLWCTDLAPKDVPEALDNTLQDLQIDYVDLYLIHWPARMKKGSVGFNPENLL 132 (315)
Q Consensus 55 e~~lG~~l~~~~~~-~~-~~R~~~~i~tK~~~~~~~~~~i~~~ve~sL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~ 132 (315)
-..+-++++..-.. |. +...++.|+|=.. ...++ .|...+...+++ -||.+++.....-......
T Consensus 171 ~~~v~~~l~~l~~~~Gl~~~~r~itvsT~G~---------~~~i~-~L~~~~l~~L~i-SLha~~~e~r~~i~p~~~~-- 237 (354)
T PRK14460 171 LDEVMRSLRTLNNEKGLNFSPRRITVSTCGI---------EKGLR-ELGESGLAFLAV-SLHAPNQELRERIMPKAAR-- 237 (354)
T ss_pred HHHHHHHHHHHhhhhccCCCCCeEEEECCCC---------hHHHH-HHHhCCCcEEEE-eCCCCCHHHHHHhcCcccc--
Confidence 34455666653111 21 1223577777431 12333 455555544444 5787776432111000011
Q ss_pred CCCHHHHHHHHHHHHhc-CC---eeeEeec--CCChhhHHHHHHhcC-CCCcccccccCcccch----------HHHHHH
Q 021264 133 PLDIPSTWRAMEALYDS-GK---ARAIGVC--NFSTKKLGDLLEIAR-VPPAVNQVECHSSWQQ----------QKLHAF 195 (315)
Q Consensus 133 ~~~~~~~~~~L~~lk~~-Gk---Ir~iGvS--~~~~~~l~~~~~~~~-~~~~~~q~~~n~~~~~----------~~~~~~ 195 (315)
.+.+++++++.+.... |+ |+++=+. |.+.++++++.+... .+..++-++||+.... ..+.+.
T Consensus 238 -~~l~~ll~al~~~~~~~~~~v~iey~LI~GvNDs~ed~~~l~~~l~~~~~~VnLIpyn~~~g~~y~~p~~e~v~~f~~~ 316 (354)
T PRK14460 238 -WPLDDLIAALKSYPLKTRERVTFEYLLLGGVNDSLEHARELVRLLSRTKCKLNLIVYNPAEGLPYSAPTEERILAFEKY 316 (354)
T ss_pred -CCHHHHHHHHHHHHHhcCCeEEEEEEEECCCCCCHHHHHHHHHHHhcCCCcEEEEcCCCCCCCCCCCCCHHHHHHHHHH
Confidence 4678888888875443 22 3344443 345567777766543 3456777788765321 235667
Q ss_pred HHHcCceEEEecCCC
Q 021264 196 CKSKGVHLSGYSPLG 210 (315)
Q Consensus 196 ~~~~gi~v~~~~pl~ 210 (315)
.+++|+.+......+
T Consensus 317 l~~~Gi~vtir~~~G 331 (354)
T PRK14460 317 LWSKGITAIIRKSKG 331 (354)
T ss_pred HHHCCCeEEEeCCCC
Confidence 777899888877764
No 201
>TIGR02090 LEU1_arch isopropylmalate/citramalate/homocitrate synthases. Methanogens, then should and aparrently do contain all three of these enzymes. Unfortunately, phylogenetic trees do not resolve into three unambiguous clades, making assignment of function to particular genes problematic. Other archaea which lack a threonine dehydratase (mainly Euryarchaeota) should contain both a CimA and a LeuA gene. This is true of, for example, archaeoglobus fulgidis, but not for the Pyrococci which have none in this clade, but one in TIGR00973 and one in TIGRT00977 which may fulfill these roles. Other species which have only one hit to this model and lack threonine dehydratase are very likely LeuA enzymes.
Probab=29.41 E-value=4.2e+02 Score=24.76 Aligned_cols=93 Identities=12% Similarity=0.201 Sum_probs=55.4
Q ss_pred HHHHHHHHHHhcCCCccceEeeecCCCccCCCCCCCCCCCCCCCHHHHHHHHHHHHhcCC-eeeEeecCCChhhHHHHHH
Q 021264 92 VPEALDNTLQDLQIDYVDLYLIHWPARMKKGSVGFNPENLLPLDIPSTWRAMEALYDSGK-ARAIGVCNFSTKKLGDLLE 170 (315)
Q Consensus 92 i~~~ve~sL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~L~~lk~~Gk-Ir~iGvS~~~~~~l~~~~~ 170 (315)
-+..+-+.|.++|+++|.+- +|.. .++-++.++.+.+.+. .+-.+++......++.+.+
T Consensus 23 ~k~~ia~~L~~~Gv~~IEvG---~p~~-----------------~~~~~e~i~~i~~~~~~~~v~~~~r~~~~di~~a~~ 82 (363)
T TIGR02090 23 QKVEIARKLDELGVDVIEAG---FPIA-----------------SEGEFEAIKKISQEGLNAEICSLARALKKDIDKAID 82 (363)
T ss_pred HHHHHHHHHHHcCCCEEEEe---CCCC-----------------ChHHHHHHHHHHhcCCCcEEEEEcccCHHHHHHHHH
Confidence 45677788999999999975 3322 1233666777665544 4445555666777777766
Q ss_pred hcCCCCcccccccCcccc--------------hHHHHHHHHHcCceEEE
Q 021264 171 IARVPPAVNQVECHSSWQ--------------QQKLHAFCKSKGVHLSG 205 (315)
Q Consensus 171 ~~~~~~~~~q~~~n~~~~--------------~~~~~~~~~~~gi~v~~ 205 (315)
. +.+...+-++.|..+. -.+.+++|+++|..+..
T Consensus 83 ~-g~~~i~i~~~~Sd~~~~~~~~~~~~~~~~~~~~~i~~ak~~G~~v~~ 130 (363)
T TIGR02090 83 C-GVDSIHTFIATSPIHLKYKLKKSRDEVLEKAVEAVEYAKEHGLIVEF 130 (363)
T ss_pred c-CcCEEEEEEcCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCEEEE
Confidence 4 2322222223333221 13578889999987653
No 202
>COG1168 MalY Bifunctional PLP-dependent enzyme with beta-cystathionase and maltose regulon repressor activities [Amino acid transport and metabolism]
Probab=29.08 E-value=5e+02 Score=24.55 Aligned_cols=75 Identities=16% Similarity=0.151 Sum_probs=38.6
Q ss_pred cchHHHHHHHHHHhCCcEEecCCCCCCHHHHHHHHHHhhhc-CC--cCCCCeEEeeccCCCCCCCCcHHHHHHHHHHhcC
Q 021264 28 PGIVGNAVDVAIKAGYRHIDCARLYLNEKEIGFVLKKLFED-GV--VKREDLWITSKLWCTDLAPKDVPEALDNTLQDLQ 104 (315)
Q Consensus 28 ~~~~~~~l~~A~~~Gi~~~DtA~~Ygse~~lG~~l~~~~~~-~~--~~R~~~~i~tK~~~~~~~~~~i~~~ve~sL~~Lg 104 (315)
+.++.+.|+.++++|+- ...|+++... +++.+.+++ .. ++.+.++++.- +...+...++.|
T Consensus 40 pp~i~~Al~~rvdhGvf----GY~~~~~~~~-~ai~~w~~~r~~~~i~~e~i~~~p~----------VVpgi~~~I~~~- 103 (388)
T COG1168 40 PPEIIEALRERVDHGVF----GYPYGSDELY-AAIAHWFKQRHQWEIKPEWIVFVPG----------VVPGISLAIRAL- 103 (388)
T ss_pred CHHHHHHHHHHHhcCCC----CCCCCCHHHH-HHHHHHHHHhcCCCCCcceEEEcCc----------chHhHHHHHHHh-
Confidence 45678899999999964 2335555433 333333221 10 23333333222 344445555554
Q ss_pred CCccceEeeecCCC
Q 021264 105 IDYVDLYLIHWPAR 118 (315)
Q Consensus 105 ~d~iDl~~lH~p~~ 118 (315)
|+.=|-+.++.|-.
T Consensus 104 T~~gd~Vvi~tPvY 117 (388)
T COG1168 104 TKPGDGVVIQTPVY 117 (388)
T ss_pred CcCCCeeEecCCCc
Confidence 34456777776654
No 203
>COG1104 NifS Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes [Amino acid transport and metabolism]
Probab=29.01 E-value=1.4e+02 Score=28.30 Aligned_cols=68 Identities=18% Similarity=0.183 Sum_probs=45.0
Q ss_pred HHHHHHHHHHHhcC-CeeeEeecCCChhhHHHHHHhcCCCCcccccccCcccc-------hHHHHHHHHHcCceEEEe
Q 021264 137 PSTWRAMEALYDSG-KARAIGVCNFSTKKLGDLLEIARVPPAVNQVECHSSWQ-------QQKLHAFCKSKGVHLSGY 206 (315)
Q Consensus 137 ~~~~~~L~~lk~~G-kIr~iGvS~~~~~~l~~~~~~~~~~~~~~q~~~n~~~~-------~~~~~~~~~~~gi~v~~~ 206 (315)
..+++.++.|..+| .|.++.|.....-.++++.+.... +...+.....+. =.++-+.|+++|+.+..=
T Consensus 102 ~aVl~~~~~Le~~g~~Vtyl~V~~~G~v~~e~L~~al~~--~T~LVSim~aNnE~G~IQpI~ei~~i~k~~~i~fHvD 177 (386)
T COG1104 102 PAVLNTCRYLERQGFEVTYLPVDSNGLVDLEQLEEALRP--DTILVSIMHANNETGTIQPIAEIGEICKERGILFHVD 177 (386)
T ss_pred HHHHHHHHHHHhcCCeEEEeCCCCCCeEcHHHHHHhcCC--CceEEEEEecccCeeecccHHHHHHHHHHcCCeEEEe
Confidence 46889999997888 799999998765555555444322 333333322222 278999999999766553
No 204
>cd03314 MAL Methylaspartate ammonia lyase (3-methylaspartase, MAL) is a homodimeric enzyme, catalyzing the magnesium-dependent reversible alpha,beta-elimination of ammonia from L-threo-(2S,3S)-3-methylaspartic acid to mesaconic acid. This reaction is part of the main catabolic pathway for glutamate. MAL belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=28.94 E-value=4.9e+02 Score=24.44 Aligned_cols=69 Identities=14% Similarity=0.108 Sum_probs=48.5
Q ss_pred HHHHHHHHHhc------CCeeeEeecCCChhhHHHHHHhcCCCCcccccccCccc---chHHHHHHHHHcCceEEEecCC
Q 021264 139 TWRAMEALYDS------GKARAIGVCNFSTKKLGDLLEIARVPPAVNQVECHSSW---QQQKLHAFCKSKGVHLSGYSPL 209 (315)
Q Consensus 139 ~~~~L~~lk~~------GkIr~iGvS~~~~~~l~~~~~~~~~~~~~~q~~~n~~~---~~~~~~~~~~~~gi~v~~~~pl 209 (315)
-++.+.+|++. +.=-..|-|.++...+.++++... .+++|...+-.- ...++...|+.+|+.++.+...
T Consensus 244 ~~~~~a~Lr~~~~~~~~~iPIa~dEs~~t~~d~~~li~~~a--~div~~kl~k~GGIt~a~kia~lA~a~Gi~~~~h~~~ 321 (369)
T cd03314 244 QIERMAALRAELDRRGVGVRIVADEWCNTLEDIRDFADAGA--AHMVQIKTPDLGGIDNTIDAVLYCKEHGVGAYLGGSC 321 (369)
T ss_pred hHHHHHHHHHHhhcCCCCceEEecCCcCCHHHHHHHHHhCC--CCEEEecchhcCCHHHHHHHHHHHHHcCCcEEEeCCC
Confidence 46677777765 333356667778888888877644 477787776543 2367899999999999987654
No 205
>PRK14469 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=28.93 E-value=4e+02 Score=24.60 Aligned_cols=96 Identities=16% Similarity=0.191 Sum_probs=57.4
Q ss_pred EeeecCCCccCCCCCCCCCCCCCCCHHHHHHHHHHHHhc-CC---eeeEeec--CCChhhHHHHHHhcC-CCCccccccc
Q 021264 111 YLIHWPARMKKGSVGFNPENLLPLDIPSTWRAMEALYDS-GK---ARAIGVC--NFSTKKLGDLLEIAR-VPPAVNQVEC 183 (315)
Q Consensus 111 ~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~L~~lk~~-Gk---Ir~iGvS--~~~~~~l~~~~~~~~-~~~~~~q~~~ 183 (315)
+-||.++........ +... ..+.+++++.++++.+. |. |+++-+. |.+.++++++.+... .+..++-++|
T Consensus 212 iSL~a~~~e~r~~i~--p~~~-~~~l~~Il~~l~~~~~~~~~~v~i~yvlI~g~NDs~ed~~~La~llk~~~~~VnLIpy 288 (343)
T PRK14469 212 LSLHAPTNFKRDQIV--PLNK-KYSIEEIINAVKIYQKKTGNRVTIEYILIKGFNDEIEDAKKLAELLKGLKVFVNLIPV 288 (343)
T ss_pred EEeCCCCHHHHHhhc--CcCC-CCCHHHHHHHHHHHHHHhCCeEEEEEEEECCCCCCHHHHHHHHHHHhccCcEEEEEec
Confidence 567887764322111 0000 14678899999887665 42 4455554 445567777776543 3445666777
Q ss_pred Ccccch---------HHHHHHHHHcCceEEEecCC
Q 021264 184 HSSWQQ---------QKLHAFCKSKGVHLSGYSPL 209 (315)
Q Consensus 184 n~~~~~---------~~~~~~~~~~gi~v~~~~pl 209 (315)
|+.... ..+.+..+++|+.+......
T Consensus 289 np~~~~~~~ps~e~l~~f~~~l~~~gi~vtvr~~~ 323 (343)
T PRK14469 289 NPTVPGLEKPSRERIERFKEILLKNGIEAEIRREK 323 (343)
T ss_pred CCCCccCCCCCHHHHHHHHHHHHHCCCeEEEeCCC
Confidence 775421 34566777889988887655
No 206
>PF04413 Glycos_transf_N: 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase); InterPro: IPR007507 This is a domain found in proteins that transfer activated sugars to a variety of substrates, including glycogen, fructose-6-phosphate and lipopolysaccharides. Proteins bearing this domain transfer UDP, ADP, GDP or CMP linked sugars. This region is flanked at the N terminus by a signal peptide and at the C terminus by a glycosyl transferase group 1 domain (IPR001296 from INTERPRO). The eukaryotic glycogen synthases may be distant members of this bacterial family [].; GO: 0005529 sugar binding, 0016740 transferase activity, 0005975 carbohydrate metabolic process; PDB: 2XCI_A 2XCU_B.
Probab=28.92 E-value=1.2e+02 Score=25.46 Aligned_cols=92 Identities=11% Similarity=-0.023 Sum_probs=39.3
Q ss_pred HHHHhcCCCcc-------ceEeeecCCCccCCCCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeeEeecCCChhhHHHHHH
Q 021264 98 NTLQDLQIDYV-------DLYLIHWPARMKKGSVGFNPENLLPLDIPSTWRAMEALYDSGKARAIGVCNFSTKKLGDLLE 170 (315)
Q Consensus 98 ~sL~~Lg~d~i-------Dl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~L~~lk~~GkIr~iGvS~~~~~~l~~~~~ 170 (315)
+..+|+|.... .++++|.... -....+...+++|+++.-=..|=+|+.++...+.+.+
T Consensus 4 ~~~eR~g~~~~~~~~~~~~~iWiHa~Sv---------------GE~~a~~~Li~~l~~~~p~~~illT~~T~tg~~~~~~ 68 (186)
T PF04413_consen 4 RLKERLGFYPPPPPRKPGPLIWIHAASV---------------GEVNAARPLIKRLRKQRPDLRILLTTTTPTGREMARK 68 (186)
T ss_dssp -HHHHHS--GGGGGGT--T-EEEE-SSH---------------HHHHHHHHHHHHHTT---TS-EEEEES-CCHHHHHHG
T ss_pred ChHHhcCCCCCCCCCCCCCcEEEEECCH---------------HHHHHHHHHHHHHHHhCCCCeEEEEecCCchHHHHHH
Confidence 34556664322 7889996432 1233455667778776322356667666555544444
Q ss_pred hcCCCCcccccccCcccch-----------------------HHHHHHHHHcCceEEEec
Q 021264 171 IARVPPAVNQVECHSSWQQ-----------------------QKLHAFCKSKGVHLSGYS 207 (315)
Q Consensus 171 ~~~~~~~~~q~~~n~~~~~-----------------------~~~~~~~~~~gi~v~~~~ 207 (315)
... ..+++.|-+++.. ..++..|+++||.++.-+
T Consensus 69 ~~~---~~v~~~~~P~D~~~~~~rfl~~~~P~~~i~~EtElWPnll~~a~~~~ip~~LvN 125 (186)
T PF04413_consen 69 LLP---DRVDVQYLPLDFPWAVRRFLDHWRPDLLIWVETELWPNLLREAKRRGIPVVLVN 125 (186)
T ss_dssp G-G---GG-SEEE---SSHHHHHHHHHHH--SEEEEES----HHHHHH-----S-EEEEE
T ss_pred hCC---CCeEEEEeCccCHHHHHHHHHHhCCCEEEEEccccCHHHHHHHhhcCCCEEEEe
Confidence 321 2333344344321 568889999998887653
No 207
>COG2159 Predicted metal-dependent hydrolase of the TIM-barrel fold [General function prediction only]
Probab=28.83 E-value=4.4e+02 Score=23.79 Aligned_cols=97 Identities=18% Similarity=0.157 Sum_probs=58.2
Q ss_pred HHhcCCCccceEeeecCCCccCCCCCCCCCCCCCCCHHHH-----HHHHHHHHhcCCeeeEeecCCChhhH----HHHHH
Q 021264 100 LQDLQIDYVDLYLIHWPARMKKGSVGFNPENLLPLDIPST-----WRAMEALYDSGKARAIGVCNFSTKKL----GDLLE 170 (315)
Q Consensus 100 L~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~-----~~~L~~lk~~GkIr~iGvS~~~~~~l----~~~~~ 170 (315)
++-++-..+|+..+..+... ....+. -+.+.++.++--=|++|+.+.++..- +++..
T Consensus 55 ~~~~~~~~i~~~~~~~~~~~--------------~~~~d~~~~~~nd~~a~~~~~~pdrf~~~~~v~p~~~~~a~~E~er 120 (293)
T COG2159 55 LAFMDAAGIDLFVLSGMGEV--------------AIIPDLRRALANDDLAALAAEYPDRFVGFARVDPRDPEAAAEELER 120 (293)
T ss_pred HhhhcccccceEEeeccccc--------------cchHHHhhhhhhHHHHHHHhhCCcceeeeeeeCCCchHHHHHHHHH
Confidence 77788888999888741110 111222 25677777777788999999887532 22222
Q ss_pred hcCCCCcccccccCcccch--------HHHHHHHHHcCceEEEecCCCC
Q 021264 171 IARVPPAVNQVECHSSWQQ--------QKLHAFCKSKGVHLSGYSPLGS 211 (315)
Q Consensus 171 ~~~~~~~~~q~~~n~~~~~--------~~~~~~~~~~gi~v~~~~pl~~ 211 (315)
... ..-++++.+.+..+. .++++.|+++|+.|+-+.....
T Consensus 121 ~v~-~~gf~g~~l~p~~~~~~~~~~~~~pi~~~a~~~gvpv~ihtG~~~ 168 (293)
T COG2159 121 RVR-ELGFVGVKLHPVAQGFYPDDPRLYPIYEAAEELGVPVVIHTGAGP 168 (293)
T ss_pred HHH-hcCceEEEecccccCCCCCChHHHHHHHHHHHcCCCEEEEeCCCC
Confidence 211 112333333333222 5699999999999999766643
No 208
>COG2987 HutU Urocanate hydratase [Amino acid transport and metabolism]
Probab=28.62 E-value=1.3e+02 Score=29.07 Aligned_cols=106 Identities=16% Similarity=0.121 Sum_probs=69.9
Q ss_pred HHHHHHHHHHhhhcCCcCCCCeEEeeccCCCCCC-C--------C--cHHHHHHHHHHhcCCCccceEeeecCCCccCCC
Q 021264 55 EKEIGFVLKKLFEDGVVKREDLWITSKLWCTDLA-P--------K--DVPEALDNTLQDLQIDYVDLYLIHWPARMKKGS 123 (315)
Q Consensus 55 e~~lG~~l~~~~~~~~~~R~~~~i~tK~~~~~~~-~--------~--~i~~~ve~sL~~Lg~d~iDl~~lH~p~~~~~~~ 123 (315)
.+++-++-++.+... -+-++++++-++..... | - .++-.-.+.-+||.+.|+|..-
T Consensus 150 yeT~~~~~r~h~~gd--L~Gk~~lTaGLGGMgGAQplA~~ma~~v~i~vevd~srI~~Rl~t~y~d~~a----------- 216 (561)
T COG2987 150 YETFAEAGRQHFGGD--LKGKWVLTAGLGGMGGAQPLAATMAGAVCIAVEVDESRIDKRLRTGYLDEIA----------- 216 (561)
T ss_pred HHHHHHHHHHhcCCC--ccceEEEecCCCcccccchHHHHhcCceEEEEEeCHHHHHHHHhcchhhhhc-----------
Confidence 445555555555322 47788888887542110 0 0 0112223445788889998761
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHhcCCeeeEeecCCChhhHHHHHHhcC-CCCccccccc
Q 021264 124 VGFNPENLLPLDIPSTWRAMEALYDSGKARAIGVCNFSTKKLGDLLEIAR-VPPAVNQVEC 183 (315)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~L~~lk~~GkIr~iGvS~~~~~~l~~~~~~~~-~~~~~~q~~~ 183 (315)
.++++.++..++.++.|+-..||+-..-.+.+.++++..- ++...-|.+.
T Consensus 217 ----------~~ldeAl~~a~~~~~ag~p~SIgl~GNaaei~~~l~~r~~~pD~vtDQTsa 267 (561)
T COG2987 217 ----------ETLDEALALAEEATAAGEPISIGLLGNAAEILPELLRRGIRPDLVTDQTSA 267 (561)
T ss_pred ----------CCHHHHHHHHHHHHhcCCceEEEEeccHHHHHHHHHHcCCCCceecccccc
Confidence 5689999999999999999999999988888888887642 3334455554
No 209
>cd00423 Pterin_binding Pterin binding enzymes. This family includes dihydropteroate synthase (DHPS) and cobalamin-dependent methyltransferases such as methyltetrahydrofolate, corrinoid iron-sulfur protein methyltransferase (MeTr) and methionine synthase (MetH). DHPS, a functional homodimer, catalyzes the condensation of p-aminobenzoic acid (pABA) in the de novo biosynthesis of folate, which is an essential cofactor in both nucleic acid and protein biosynthesis. Prokaryotes (and some lower eukaryotes) must synthesize folate de novo, while higher eukaryotes are able to utilize dietary folate and therefore lack DHPS. Sulfonamide drugs, which are substrate analogs of pABA, target DHPS. Cobalamin-dependent methyltransferases catalyze the transfer of a methyl group via a methyl- cob(III)amide intermediate. These include MeTr, a functional heterodimer, and the folate binding domain of MetH.
Probab=28.53 E-value=2.6e+02 Score=24.65 Aligned_cols=107 Identities=13% Similarity=0.095 Sum_probs=63.4
Q ss_pred CCCcHHHHHHHHHHhcCCCccceEee-ecCCCccCCCCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeeEeecCCChhhHH
Q 021264 88 APKDVPEALDNTLQDLQIDYVDLYLI-HWPARMKKGSVGFNPENLLPLDIPSTWRAMEALYDSGKARAIGVCNFSTKKLG 166 (315)
Q Consensus 88 ~~~~i~~~ve~sL~~Lg~d~iDl~~l-H~p~~~~~~~~~~~~~~~~~~~~~~~~~~L~~lk~~GkIr~iGvS~~~~~~l~ 166 (315)
+++.+.+..++. -.-|.|.||+=.- -+|.... - +.+ ...+.+...++.+++.-.+ -|.+.+++++.++
T Consensus 22 ~~~~~~~~a~~~-~~~GAdiIDvG~~st~p~~~~-~----~~~----~E~~rl~~~v~~l~~~~~~-piSIDT~~~~v~~ 90 (258)
T cd00423 22 SLDKALEHARRM-VEEGADIIDIGGESTRPGAEP-V----SVE----EELERVIPVLRALAGEPDV-PISVDTFNAEVAE 90 (258)
T ss_pred CHHHHHHHHHHH-HHCCCCEEEECCCcCCCCCCc-C----CHH----HHHHHHHHHHHHHHhcCCC-eEEEeCCcHHHHH
Confidence 334444444443 3567888888632 2232110 0 000 1223456677777766344 3899999999999
Q ss_pred HHHHhcCCCCcccccccCcccchHHHHHHHHHcCceEEEecCC
Q 021264 167 DLLEIARVPPAVNQVECHSSWQQQKLHAFCKSKGVHLSGYSPL 209 (315)
Q Consensus 167 ~~~~~~~~~~~~~q~~~n~~~~~~~~~~~~~~~gi~v~~~~pl 209 (315)
++++.+ .+.++-+ +....+.++++.++++|..++.+..-
T Consensus 91 aaL~~g--~~iINdi--s~~~~~~~~~~l~~~~~~~vV~m~~~ 129 (258)
T cd00423 91 AALKAG--ADIINDV--SGGRGDPEMAPLAAEYGAPVVLMHMD 129 (258)
T ss_pred HHHHhC--CCEEEeC--CCCCCChHHHHHHHHcCCCEEEECcC
Confidence 999875 2223322 33322268999999999999998644
No 210
>COG1038 PycA Pyruvate carboxylase [Energy production and conversion]
Probab=28.29 E-value=5.4e+02 Score=27.16 Aligned_cols=146 Identities=18% Similarity=0.160 Sum_probs=82.0
Q ss_pred chHHHHHHHHHHhCCcEEecCCCCCCHHHHHHHHHHhhhcCCcCCCCeEEeeccCCCCCCCCcHHHHHHHHHHhcCCCcc
Q 021264 29 GIVGNAVDVAIKAGYRHIDCARLYLNEKEIGFVLKKLFEDGVVKREDLWITSKLWCTDLAPKDVPEALDNTLQDLQIDYV 108 (315)
Q Consensus 29 ~~~~~~l~~A~~~Gi~~~DtA~~Ygse~~lG~~l~~~~~~~~~~R~~~~i~tK~~~~~~~~~~i~~~ve~sL~~Lg~d~i 108 (315)
+-+.+++++|.|.|+..+= .|..|..+ .+... +-++-|...+... |-..--++++..+--+..-+
T Consensus 17 EIAIRvFRAa~ELgi~TVA---Iys~ED~~--S~HR~------KADEsY~iG~~~~----Pi~aYL~IdeII~iAk~~ga 81 (1149)
T COG1038 17 EIAIRVFRAANELGIKTVA---IYSEEDRL--SLHRF------KADESYLIGEGKG----PVEAYLSIDEIIRIAKRSGA 81 (1149)
T ss_pred hhhHHHHHHHHhcCceEEE---Eeeccccc--hhhhc------cccceeeecCCCC----chHHhccHHHHHHHHHHcCC
Confidence 5688999999999998764 57544322 22221 4566666666533 22222334443333222334
Q ss_pred ceEeeecCCCccCCCCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeeEeecCCChhhHHHHH---------HhcCCCCccc
Q 021264 109 DLYLIHWPARMKKGSVGFNPENLLPLDIPSTWRAMEALYDSGKARAIGVCNFSTKKLGDLL---------EIARVPPAVN 179 (315)
Q Consensus 109 Dl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~L~~lk~~GkIr~iGvS~~~~~~l~~~~---------~~~~~~~~~~ 179 (315)
|.+ | |.. -.+.|..+..+++.++|. .+|| -+++.++.+- ..+++| ++
T Consensus 82 DaI--h-PGY---------------GfLSEn~efA~~c~eaGI-~FIG---P~~e~ld~~GdKv~Ar~~A~~agvP--vi 137 (1149)
T COG1038 82 DAI--H-PGY---------------GFLSENPEFARACAEAGI-TFIG---PKPEVLDMLGDKVKARNAAIKAGVP--VI 137 (1149)
T ss_pred Cee--c-CCc---------------ccccCCHHHHHHHHHcCC-EEeC---CCHHHHHHhccHHHHHHHHHHcCCC--cc
Confidence 543 4 222 123455666777777775 4888 4444444331 222221 12
Q ss_pred ccccCcccchHHHHHHHHHcCceEEEecCCCCCC
Q 021264 180 QVECHSSWQQQKLHAFCKSKGVHLSGYSPLGSPG 213 (315)
Q Consensus 180 q~~~n~~~~~~~~~~~~~~~gi~v~~~~pl~~gg 213 (315)
.-.--+...-.++.+++++.|-+++....+++||
T Consensus 138 pgt~~~~~~~ee~~~fa~~~gyPvmiKA~~GGGG 171 (1149)
T COG1038 138 PGTDGPIETIEEALEFAEEYGYPVMIKAAAGGGG 171 (1149)
T ss_pred CCCCCCcccHHHHHHHHHhcCCcEEEEEccCCCc
Confidence 2111222223789999999999999999998876
No 211
>cd04731 HisF The cyclase subunit of imidazoleglycerol phosphate synthase (HisF). Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and plants, or peformed by a heterodimer (HisH-glutaminase and HisF-cyclase), like in bacteria.
Probab=28.17 E-value=3.9e+02 Score=23.02 Aligned_cols=119 Identities=13% Similarity=0.064 Sum_probs=56.3
Q ss_pred HHHHHHhCCcEEecCCCCC-CHHHHHHHHHHhhhcCCc-----C-CC--CeEEeeccCCCCCCCCcHHHHHHHHHHhcCC
Q 021264 35 VDVAIKAGYRHIDCARLYL-NEKEIGFVLKKLFEDGVV-----K-RE--DLWITSKLWCTDLAPKDVPEALDNTLQDLQI 105 (315)
Q Consensus 35 l~~A~~~Gi~~~DtA~~Yg-se~~lG~~l~~~~~~~~~-----~-R~--~~~i~tK~~~~~~~~~~i~~~ve~sL~~Lg~ 105 (315)
++.+++.|+..+..+...- +...+.+..+..-.+..+ + |. +..+.++.|..... ... ..+-+.+..+|
T Consensus 86 ~~~~l~~G~~~v~ig~~~~~~p~~~~~i~~~~~~~~i~~~ld~k~~~~~~~~v~~~~~~~~~~-~~~-~~~~~~l~~~G- 162 (243)
T cd04731 86 ARRLLRAGADKVSINSAAVENPELIREIAKRFGSQCVVVSIDAKRRGDGGYEVYTHGGRKPTG-LDA-VEWAKEVEELG- 162 (243)
T ss_pred HHHHHHcCCceEEECchhhhChHHHHHHHHHcCCCCEEEEEEeeecCCCceEEEEcCCceecC-CCH-HHHHHHHHHCC-
Confidence 3444557888887765543 444555555543000000 0 11 13445555543322 222 23334455666
Q ss_pred CccceEeeecCCCccCCCCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeeEeecCC-ChhhHHHHHHh
Q 021264 106 DYVDLYLIHWPARMKKGSVGFNPENLLPLDIPSTWRAMEALYDSGKARAIGVCNF-STKKLGDLLEI 171 (315)
Q Consensus 106 d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~L~~lk~~GkIr~iGvS~~-~~~~l~~~~~~ 171 (315)
+|.+.+|..+..... ..--|+.+.++++.-.+.-|..... +++.+.++++.
T Consensus 163 --~d~i~v~~i~~~g~~-------------~g~~~~~i~~i~~~~~~pvia~GGi~~~~di~~~l~~ 214 (243)
T cd04731 163 --AGEILLTSMDRDGTK-------------KGYDLELIRAVSSAVNIPVIASGGAGKPEHFVEAFEE 214 (243)
T ss_pred --CCEEEEeccCCCCCC-------------CCCCHHHHHHHHhhCCCCEEEeCCCCCHHHHHHHHHh
Confidence 666777765432100 0012555666665545555554443 45666666664
No 212
>PF01527 HTH_Tnp_1: Transposase; InterPro: IPR002514 Transposase proteins are necessary for efficient DNA transposition. This family consists of various Escherichia coli insertion elements and other bacterial transposases some of which are members of the IS3 family. This region includes a helix-turn-helix motif (HTH) at the N terminus followed by a leucine zipper (LZ) motif. The LZ motif has been shown to mediate oligomerisation of the transposase components in IS911 []. More information about these proteins can be found at Protein of the Month: Transposase [].; GO: 0003677 DNA binding, 0004803 transposase activity, 0006313 transposition, DNA-mediated; PDB: 2JN6_A 2RN7_A.
Probab=28.16 E-value=15 Score=25.40 Aligned_cols=40 Identities=20% Similarity=0.115 Sum_probs=33.5
Q ss_pred CCcchHHHHHHHHHHhCCcEEecCCCCC-CHHHHHHHHHHh
Q 021264 26 ADPGIVGNAVDVAIKAGYRHIDCARLYL-NEKEIGFVLKKL 65 (315)
Q Consensus 26 ~~~~~~~~~l~~A~~~Gi~~~DtA~~Yg-se~~lG~~l~~~ 65 (315)
.+++.-..+|..++..|.+.-++|..|| +...|..|++.+
T Consensus 7 ys~e~K~~~v~~~~~~g~sv~~va~~~gi~~~~l~~W~~~~ 47 (76)
T PF01527_consen 7 YSPEFKLQAVREYLESGESVSEVAREYGISPSTLYNWRKQY 47 (76)
T ss_dssp --HHHHHHHHHHHHHHHCHHHHHHHHHTS-HHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHCCCceEeeecccccccccccHHHHHH
Confidence 3556677889999999999999999999 899999999987
No 213
>smart00857 Resolvase Resolvase, N terminal domain. The N-terminal domain of the resolvase family contains the active site and the dimer interface. The extended arm at the C-terminus of this domain connects to the C-terminal helix-turn-helix domain of resolvase.
Probab=28.04 E-value=1.6e+02 Score=22.99 Aligned_cols=52 Identities=21% Similarity=0.301 Sum_probs=39.5
Q ss_pred HHHHHHHHHhcCCCccceEeeecCCCccCCCCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeeEeec
Q 021264 93 PEALDNTLQDLQIDYVDLYLIHWPARMKKGSVGFNPENLLPLDIPSTWRAMEALYDSGKARAIGVC 158 (315)
Q Consensus 93 ~~~ve~sL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~L~~lk~~GkIr~iGvS 158 (315)
+..+.+.|+.+....+|.+++...++.. .+..+....++.|.+.| |+-+-++
T Consensus 51 Rp~l~~ll~~~~~g~~~~ivv~~~~Rl~-------------R~~~~~~~~~~~l~~~g-i~l~~~~ 102 (148)
T smart00857 51 RPGLQRLLADLRAGDIDVLVVYKLDRLG-------------RSLRDLLALLELLEKKG-VRLVSVT 102 (148)
T ss_pred CHHHHHHHHHHHcCCCCEEEEeccchhh-------------CcHHHHHHHHHHHHHCC-CEEEECc
Confidence 5677777887777778999999988864 44668888889998887 5555443
No 214
>cd07945 DRE_TIM_CMS Leptospira interrogans citramalate synthase (CMS) and related proteins, N-terminal catalytic TIM barrel domain. Citramalate synthase (CMS) catalyzes the conversion of pyruvate and acetyl-CoA to (R)-citramalate in the first dedicated step of the citramalate pathway. Citramalate is only found in Leptospira interrogans and a few other microorganisms. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center con
Probab=27.95 E-value=4.4e+02 Score=23.58 Aligned_cols=127 Identities=11% Similarity=0.076 Sum_probs=66.4
Q ss_pred cCCCCccCccccccCcCCcchHHHHHHHHHHh-CCcEEecCCC-CCCHHHHHHHHHHhhhcCCcC-C-CCeEEeeccCCC
Q 021264 10 LNTGAKMPSVGLGTWQADPGIVGNAVDVAIKA-GYRHIDCARL-YLNEKEIGFVLKKLFEDGVVK-R-EDLWITSKLWCT 85 (315)
Q Consensus 10 l~tg~~vs~lglG~~~~~~~~~~~~l~~A~~~-Gi~~~DtA~~-Ygse~~lG~~l~~~~~~~~~~-R-~~~~i~tK~~~~ 85 (315)
|+.|...+.+.|.+ ++-.++++..++. ||+.++.... .+.+.. +++++......+. . .++.++.-+
T Consensus 5 lRDG~Q~~~~~~s~-----e~K~~i~~~L~~~~Gv~~IEvg~~~~s~~e~--~av~~~~~~~~~~~~~~~~~~~a~~--- 74 (280)
T cd07945 5 LRDGEQTSGVSFSP-----SEKLNIAKILLQELKVDRIEVASARVSEGEF--EAVQKIIDWAAEEGLLDRIEVLGFV--- 74 (280)
T ss_pred CCCcCcCCCCccCH-----HHHHHHHHHHHHHhCCCEEEecCCCCCHHHH--HHHHHHHHHhhhhccccCcEEEEec---
Confidence 45566655555444 7777888876555 9999998754 543322 5555542111000 0 022222211
Q ss_pred CCCCCcHHHHHHHHHHhcCCCccceEeeecCCCccCCCCCCCCCCCCCCC----HHHHHHHHHHHHhcCCeeeEeecCCC
Q 021264 86 DLAPKDVPEALDNTLQDLQIDYVDLYLIHWPARMKKGSVGFNPENLLPLD----IPSTWRAMEALYDSGKARAIGVCNFS 161 (315)
Q Consensus 86 ~~~~~~i~~~ve~sL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~----~~~~~~~L~~lk~~GkIr~iGvS~~~ 161 (315)
+ ..+.++..++ .|++.|.++.==++..... ..... .+.+.+.++.+++.|.--.++++.++
T Consensus 75 ---~--~~~~~~~A~~-~g~~~i~i~~~~S~~h~~~---------~~~~t~~e~l~~~~~~i~~a~~~G~~v~~~~~d~~ 139 (280)
T cd07945 75 ---D--GDKSVDWIKS-AGAKVLNLLTKGSLKHCTE---------QLRKTPEEHFADIREVIEYAIKNGIEVNIYLEDWS 139 (280)
T ss_pred ---C--cHHHHHHHHH-CCCCEEEEEEeCCHHHHHH---------HHCcCHHHHHHHHHHHHHHHHhCCCEEEEEEEeCC
Confidence 1 2456777665 4888888875111111000 00022 34455667777888887677777543
No 215
>PRK13561 putative diguanylate cyclase; Provisional
Probab=27.60 E-value=3.1e+02 Score=27.55 Aligned_cols=116 Identities=12% Similarity=0.135 Sum_probs=73.0
Q ss_pred eEEeeccCCCCCCCCcHHHHHHHHHHhcCCCccceEeeecCCCccCCCCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeeE
Q 021264 76 LWITSKLWCTDLAPKDVPEALDNTLQDLQIDYVDLYLIHWPARMKKGSVGFNPENLLPLDIPSTWRAMEALYDSGKARAI 155 (315)
Q Consensus 76 ~~i~tK~~~~~~~~~~i~~~ve~sL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~L~~lk~~GkIr~i 155 (315)
+.|+--+.........+...+.+.|++.+.+ ...+.+--+.... ..+.+.+.+.+++|++.|- .|
T Consensus 486 ~~~~iNlS~~~l~~~~f~~~l~~~l~~~~~~-~~~l~lEi~E~~~------------~~~~~~~~~~~~~l~~~G~--~i 550 (651)
T PRK13561 486 LPLSVNLSALQLMHPNMVADMLELLTRYRIQ-PGTLILEVTESRR------------IDDPHAAVAILRPLRNAGV--RV 550 (651)
T ss_pred ceEEEECCHHHHCCchHHHHHHHHHHHcCCC-hHHEEEEEchhhh------------hcCHHHHHHHHHHHHHCCC--EE
Confidence 3445444444444567888999999999865 3344443332211 0346778899999999998 68
Q ss_pred eecCCCh--hhHHHHHHhcCCCCcccccccCcccc---h----HHHHHHHHHcCceEEEe
Q 021264 156 GVCNFST--KKLGDLLEIARVPPAVNQVECHSSWQ---Q----QKLHAFCKSKGVHLSGY 206 (315)
Q Consensus 156 GvS~~~~--~~l~~~~~~~~~~~~~~q~~~n~~~~---~----~~~~~~~~~~gi~v~~~ 206 (315)
++..|+. ..+..+......+++.+-+.-+.... + ..++..|+..|+.|++=
T Consensus 551 ~lddfG~g~ssl~~L~~l~~l~~d~lKiD~s~i~~i~~~~~~v~~i~~~a~~l~i~viAe 610 (651)
T PRK13561 551 ALDDFGMGYAGLRQLQHMKSLPIDVLKIDKMFVDGLPEDDSMVAAIIMLAQSLNLQVIAE 610 (651)
T ss_pred EEECCCCCcccHHHHhhcCCCCCcEEEECHHHHhcCCCCHHHHHHHHHHHHHCCCcEEEe
Confidence 8877764 34444544333555665554332221 1 56889999999999985
No 216
>PRK04175 rpl7ae 50S ribosomal protein L7Ae; Validated
Probab=27.57 E-value=2.3e+02 Score=21.99 Aligned_cols=64 Identities=17% Similarity=0.156 Sum_probs=44.6
Q ss_pred HHHHHHHHHHHhcCCeeeEeecCCChhhHHHHHHhcCCCCcccccccCcccchHHHHHHHHHcCceEEEe
Q 021264 137 PSTWRAMEALYDSGKARAIGVCNFSTKKLGDLLEIARVPPAVNQVECHSSWQQQKLHAFCKSKGVHLSGY 206 (315)
Q Consensus 137 ~~~~~~L~~lk~~GkIr~iGvS~~~~~~l~~~~~~~~~~~~~~q~~~n~~~~~~~~~~~~~~~gi~v~~~ 206 (315)
..++..|.-+++.|++. . +..+..+.++.......++--..++.+-...+..+|++++|+++-.
T Consensus 16 ~ki~~lL~la~ragklv-~-----G~~~v~kaikkgkakLVilA~D~s~~~i~~~~~~lc~~~~Vp~~~~ 79 (122)
T PRK04175 16 EKALEAVEKARDTGKIK-K-----GTNETTKAVERGIAKLVVIAEDVDPEEIVAHLPLLCEEKKIPYVYV 79 (122)
T ss_pred HHHHHHHHHHHHcCCEe-E-----cHHHHHHHHHcCCccEEEEeCCCChHHHHHHHHHHHHHcCCCEEEE
Confidence 45788888899999975 3 4456667777666656666666555433357888999999996543
No 217
>PRK09058 coproporphyrinogen III oxidase; Provisional
Probab=27.56 E-value=5.6e+02 Score=24.65 Aligned_cols=110 Identities=19% Similarity=0.175 Sum_probs=0.0
Q ss_pred HHHHHHHHHhCCcEEecCCCCCCHHHHH------------HHHHHhhhcCCcCCCCeEEeeccCCCCCCCCcHHHHHHHH
Q 021264 32 GNAVDVAIKAGYRHIDCARLYLNEKEIG------------FVLKKLFEDGVVKREDLWITSKLWCTDLAPKDVPEALDNT 99 (315)
Q Consensus 32 ~~~l~~A~~~Gi~~~DtA~~Ygse~~lG------------~~l~~~~~~~~~~R~~~~i~tK~~~~~~~~~~i~~~ve~s 99 (315)
.+.++...++|+|.|...---.+++++- ++++..-+.| ...+.+--=.|.+..+.+.+++.++..
T Consensus 163 ~e~l~~l~~aGvnRiSiGVQSf~d~vLk~lgR~~~~~~~~~~i~~l~~~g---~~~v~~DlI~GlPgqT~e~~~~~l~~~ 239 (449)
T PRK09058 163 DEKADAALDAGANRFSIGVQSFNTQVRRRAGRKDDREEVLARLEELVARD---RAAVVCDLIFGLPGQTPEIWQQDLAIV 239 (449)
T ss_pred HHHHHHHHHcCCCEEEecCCcCCHHHHHHhCCCCCHHHHHHHHHHHHhCC---CCcEEEEEEeeCCCCCHHHHHHHHHHH
Q ss_pred HHhcCCCccceEeee-----------------cC-CCccCCCCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeeEeecCC
Q 021264 100 LQDLQIDYVDLYLIH-----------------WP-ARMKKGSVGFNPENLLPLDIPSTWRAMEALYDSGKARAIGVCNF 160 (315)
Q Consensus 100 L~~Lg~d~iDl~~lH-----------------~p-~~~~~~~~~~~~~~~~~~~~~~~~~~L~~lk~~GkIr~iGvS~~ 160 (315)
++ ++.++|++|.|. .| +.. ...+-.-.+.+.|.+.|- +.+++|+|
T Consensus 240 ~~-l~~~~is~y~L~~~pgT~l~~~~~~g~l~~~~~~~--------------~~~~my~~~~~~L~~~Gy-~~yeis~f 302 (449)
T PRK09058 240 RD-LGLDGVDLYALNLLPGTPLAKAVEKGKLPPPATPA--------------ERADMYAYGVEFLAKAGW-RQLSNSHW 302 (449)
T ss_pred Hh-cCCCEEEEeccccCCCCHHHHHHHcCCCCCCCCHH--------------HHHHHHHHHHHHHHHCCC-eEEeeeee
No 218
>CHL00200 trpA tryptophan synthase alpha subunit; Provisional
Probab=27.56 E-value=3.6e+02 Score=23.98 Aligned_cols=75 Identities=19% Similarity=0.138 Sum_probs=44.6
Q ss_pred CHHHHHHHHHHHHhcCC-eeeEeecCCCh----hhHHH-----------------HHHhcC---CCCcccccccCcccch
Q 021264 135 DIPSTWRAMEALYDSGK-ARAIGVCNFST----KKLGD-----------------LLEIAR---VPPAVNQVECHSSWQQ 189 (315)
Q Consensus 135 ~~~~~~~~L~~lk~~Gk-Ir~iGvS~~~~----~~l~~-----------------~~~~~~---~~~~~~q~~~n~~~~~ 189 (315)
+.+..++.+..|.+.|- +--||+-.-+| ..+++ +++... -.|.+.+..||++.+.
T Consensus 27 ~~~~~~~~~~~l~~~Gad~iElGiPfSDP~aDGpvIq~a~~rAL~~g~~~~~~~~~~~~~r~~~~~p~vlm~Y~N~i~~~ 106 (263)
T CHL00200 27 DIVITKKALKILDKKGADIIELGIPYSDPLADGPIIQEASNRALKQGINLNKILSILSEVNGEIKAPIVIFTYYNPVLHY 106 (263)
T ss_pred CHHHHHHHHHHHHHCCCCEEEECCCCCCCCccCHHHHHHHHHHHHcCCCHHHHHHHHHHHhcCCCCCEEEEecccHHHHh
Confidence 35677888888888874 55677765443 11111 111111 1244688888888764
Q ss_pred --HHHHHHHHHcCceEEEecCC
Q 021264 190 --QKLHAFCKSKGVHLSGYSPL 209 (315)
Q Consensus 190 --~~~~~~~~~~gi~v~~~~pl 209 (315)
+..++.|++.|+.-+..--|
T Consensus 107 G~e~F~~~~~~aGvdgviipDL 128 (263)
T CHL00200 107 GINKFIKKISQAGVKGLIIPDL 128 (263)
T ss_pred CHHHHHHHHHHcCCeEEEecCC
Confidence 56777777777765554333
No 219
>PRK14470 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=27.47 E-value=3.1e+02 Score=25.39 Aligned_cols=98 Identities=7% Similarity=0.043 Sum_probs=58.5
Q ss_pred EeeecCCCccCCCCCCCCCCCCCCCHHHHHHHHHHHHhcCC---eeeEeecC--CChhhHHHHHHhcC-CCCcccccccC
Q 021264 111 YLIHWPARMKKGSVGFNPENLLPLDIPSTWRAMEALYDSGK---ARAIGVCN--FSTKKLGDLLEIAR-VPPAVNQVECH 184 (315)
Q Consensus 111 ~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~L~~lk~~Gk---Ir~iGvS~--~~~~~l~~~~~~~~-~~~~~~q~~~n 184 (315)
+-||.++......-...+.. .+.+++++++..+.+.|+ +.++=+.. .+.++++++.+... .+..++.++||
T Consensus 208 iSLhA~~~e~r~~I~p~~~~---~~le~il~ai~~~~~~~rri~ieyvLI~GvNDseeda~~La~llk~l~~~vnlI~~N 284 (336)
T PRK14470 208 ISLNAAIPWKRRALMPIEQG---FPLDELVEAIREHAALRGRVTLEYVMISGVNVGEEDAAALGRLLAGIPVRLNPIAVN 284 (336)
T ss_pred EecCCCCHHHHHHhcCcccc---CCHHHHHHHHHHHHHhCCCeEEEEEEEecccCCHHHHHHHHHHHhcCCCeEEEeccC
Confidence 56788766432211100011 467889999999887654 23433333 45667777776654 45678888888
Q ss_pred cccch---------HHHHHHH--HHcCceEEEecCCCC
Q 021264 185 SSWQQ---------QKLHAFC--KSKGVHLSGYSPLGS 211 (315)
Q Consensus 185 ~~~~~---------~~~~~~~--~~~gi~v~~~~pl~~ 211 (315)
+.... ....+.. +++|+.+......+.
T Consensus 285 ~~~~~~~~p~~~~i~~f~~~l~~~~~g~~~~~R~~~G~ 322 (336)
T PRK14470 285 DATGRYRPPDEDEWNAFRDALARELPGTPVVRRYSGGQ 322 (336)
T ss_pred CCCCCccCCCHHHHHHHHHHHHHccCCeEEEEECCCCC
Confidence 75432 2345556 366888888777643
No 220
>COG2200 Rtn c-di-GMP phosphodiesterase class I (EAL domain) [Signal transduction mechanisms]
Probab=27.45 E-value=4.2e+02 Score=23.19 Aligned_cols=131 Identities=15% Similarity=0.136 Sum_probs=79.2
Q ss_pred HHHHHHHHHHhhhcCCcCCC--CeEEeeccCCCCCCCCcHHHHHHHHHHhcCCCccceEeeecCCCccCCCCCCCCCCCC
Q 021264 55 EKEIGFVLKKLFEDGVVKRE--DLWITSKLWCTDLAPKDVPEALDNTLQDLQIDYVDLYLIHWPARMKKGSVGFNPENLL 132 (315)
Q Consensus 55 e~~lG~~l~~~~~~~~~~R~--~~~i~tK~~~~~~~~~~i~~~ve~sL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~ 132 (315)
..++.++++.... .+. .+.++.-+.........+...+.+.+++.+++.- -+.+ ...+...-
T Consensus 69 ~~v~~~a~~~~~~----~~~~~~~~l~iNis~~~l~~~~~~~~l~~~l~~~~~~~~-~l~l-EitE~~~~---------- 132 (256)
T COG2200 69 RWVLEEACRQLRT----WPRAGPLRLAVNLSPVQLRSPGLVDLLLRLLARLGLPPH-RLVL-EITESALI---------- 132 (256)
T ss_pred HHHHHHHHHHHHh----hhhcCCceEEEEcCHHHhCCchHHHHHHHHHHHhCCCcc-eEEE-EEeCchhh----------
Confidence 5566666665421 122 4777777755444456677888899999886543 2222 22221100
Q ss_pred CCCHHHHHHHHHHHHhcCCeeeEeecCCCh--hhHHHHHHhcCCCCcccccccCcccc--------h--HHHHHHHHHcC
Q 021264 133 PLDIPSTWRAMEALYDSGKARAIGVCNFST--KKLGDLLEIARVPPAVNQVECHSSWQ--------Q--QKLHAFCKSKG 200 (315)
Q Consensus 133 ~~~~~~~~~~L~~lk~~GkIr~iGvS~~~~--~~l~~~~~~~~~~~~~~q~~~n~~~~--------~--~~~~~~~~~~g 200 (315)
...+.+...++.|++.|- .|.+..|+. ..+..+.+ .+++.+-+.-+.... . ..++..|++.|
T Consensus 133 -~~~~~~~~~l~~L~~~G~--~ialDDFGtG~ssl~~L~~---l~~d~iKID~~fi~~i~~~~~~~~iv~~iv~la~~l~ 206 (256)
T COG2200 133 -DDLDTALALLRQLRELGV--RIALDDFGTGYSSLSYLKR---LPPDILKIDRSFVRDLETDARDQAIVRAIVALAHKLG 206 (256)
T ss_pred -cCHHHHHHHHHHHHHCCC--eEEEECCCCCHHHHHHHhh---CCCCeEEECHHHHhhcccCcchHHHHHHHHHHHHHCC
Confidence 234467889999999993 477777764 33444433 455555555443331 1 56899999999
Q ss_pred ceEEEec
Q 021264 201 VHLSGYS 207 (315)
Q Consensus 201 i~v~~~~ 207 (315)
+.|++=+
T Consensus 207 ~~vvaEG 213 (256)
T COG2200 207 LTVVAEG 213 (256)
T ss_pred CEEEEee
Confidence 9999953
No 221
>COG2861 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=27.43 E-value=4.3e+02 Score=23.30 Aligned_cols=54 Identities=15% Similarity=0.041 Sum_probs=33.6
Q ss_pred ceEeeecCCCccCCCCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeeEeecCCChh
Q 021264 109 DLYLIHWPARMKKGSVGFNPENLLPLDIPSTWRAMEALYDSGKARAIGVCNFSTK 163 (315)
Q Consensus 109 Dl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~L~~lk~~GkIr~iGvS~~~~~ 163 (315)
+-++||-|-...........--...+..+++.+-++.++.+ .--++|+.||-..
T Consensus 78 ~evlih~PmeP~~~~~~e~gtL~~~~s~~e~~~rl~~a~~~-v~~~~GlnNhmGs 131 (250)
T COG2861 78 HEVLIHMPMEPFSYPKIEPGTLRPGMSAEEILRRLRKAMNK-VPDAVGLNNHMGS 131 (250)
T ss_pred CEEEEeccCCcccCCCCCCCCcccCCCHHHHHHHHHHHHhh-Cccceeehhhhhh
Confidence 34788987554333222222112235677889999988876 4568999998654
No 222
>PRK10391 oriC-binding nucleoid-associated protein; Provisional
Probab=27.41 E-value=50 Score=22.88 Aligned_cols=50 Identities=10% Similarity=0.255 Sum_probs=35.8
Q ss_pred CCCCHHHHHHhhcccCcccCH-HHHHHHHhchhhhh----ccccccc--ccCCCCcc
Q 021264 256 KSTNEARIKENFDIFDWSISE-DLFVKFSEIEQARL----IRGTAYV--HDTFGSYR 305 (315)
Q Consensus 256 G~~~~~~l~~nl~a~~~~Lt~-e~~~~l~~~~~~~~----~~g~~~~--~~~~~~~~ 305 (315)
.+++.+-|+..++-....|+. .|+..+.++.+.|. ..|.-|- +-|++-|+
T Consensus 12 kcss~eTLEkv~e~~~y~L~~~~e~~~f~~AaDHR~AEL~~~~kLyD~gkVP~sVW~ 68 (71)
T PRK10391 12 KISSLESLEKLFDHLNYTLTDDQEIINMYRAADHRRAELVSGGRLFDLGQVPKSVWH 68 (71)
T ss_pred hcCcHHHHHHHHHHhhcccCCHHHHHHHHHHHHHHHHHHHhCccccccccCCHHHHH
Confidence 467889999999988889997 88888877776332 3345555 45776654
No 223
>PF13378 MR_MLE_C: Enolase C-terminal domain-like; PDB: 3FCP_B 3P0W_D 3VFC_A 3VDG_A 3FJ4_B 3CT2_B 3DGB_A 3V3W_A 3V4B_A 3NO1_E ....
Probab=27.20 E-value=95 Score=23.12 Aligned_cols=49 Identities=18% Similarity=0.268 Sum_probs=34.8
Q ss_pred cCCChhhHHHHHHhcCCCCcccccccCcc---cchHHHHHHHHHcCceEEEecC
Q 021264 158 CNFSTKKLGDLLEIARVPPAVNQVECHSS---WQQQKLHAFCKSKGVHLSGYSP 208 (315)
Q Consensus 158 S~~~~~~l~~~~~~~~~~~~~~q~~~n~~---~~~~~~~~~~~~~gi~v~~~~p 208 (315)
|.++...+.++++.... +++|+....+ .....+.++|+.+|+.++.++.
T Consensus 3 ~~~~~~~~~~li~~~a~--d~~~~~~~~~GGit~~~~i~~~A~~~gi~~~~h~~ 54 (111)
T PF13378_consen 3 SLFSLHDFRRLIEAGAV--DIVQIDPTRCGGITEALRIAALAEAHGIPVMPHSM 54 (111)
T ss_dssp TSSSHHHHHHHHHTTSC--SEEEEBHHHHTSHHHHHHHHHHHHHTT-EEEEBSS
T ss_pred CCCCHHHHHHHHHcCCC--CEEEeCchhcCCHHHHHHHHHHHHHhCCCEEecCC
Confidence 45677788888775433 6777765433 2226789999999999999986
No 224
>TIGR00612 ispG_gcpE 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase. Chlamydial members of the family have a long insert. The family is largely restricted to Bacteria, where it is widely but not universally distributed. No homology can be detected between the GcpE family and other proteins.
Probab=27.12 E-value=5.1e+02 Score=24.06 Aligned_cols=72 Identities=8% Similarity=0.013 Sum_probs=45.9
Q ss_pred CCHHHHHHHHHHHHhcCCeeeEeecCCChhhHHHHHHhcCCCCcccccccCcccchHHHHHHHHHcCceEEE
Q 021264 134 LDIPSTWRAMEALYDSGKARAIGVCNFSTKKLGDLLEIARVPPAVNQVECHSSWQQQKLHAFCKSKGVHLSG 205 (315)
Q Consensus 134 ~~~~~~~~~L~~lk~~GkIr~iGvS~~~~~~l~~~~~~~~~~~~~~q~~~n~~~~~~~~~~~~~~~gi~v~~ 205 (315)
.+..+..++|.+.++.-.|--++==-|+.......++..-.+..+|.-++..-.+-.++++.|+++|+++=.
T Consensus 55 vp~~~~A~al~~I~~~~~iPlVADIHFd~~lAl~a~~~g~dkiRINPGNig~~e~v~~vv~~ak~~~ipIRI 126 (346)
T TIGR00612 55 VPDRESAAAFEAIKEGTNVPLVADIHFDYRLAALAMAKGVAKVRINPGNIGFRERVRDVVEKARDHGKAMRI 126 (346)
T ss_pred CCCHHHHHhHHHHHhCCCCCEEEeeCCCcHHHHHHHHhccCeEEECCCCCCCHHHHHHHHHHHHHCCCCEEE
Confidence 334567888999988766665554445555544555544344455555554433337899999999988744
No 225
>cd00959 DeoC 2-deoxyribose-5-phosphate aldolase (DERA) of the DeoC family. DERA belongs to the class I aldolases and catalyzes a reversible aldol reaction between acetaldehyde and glyceraldehyde 3-phosphate to generate 2-deoxyribose 5-phosphate. DERA is unique in catalyzing the aldol reaction between two aldehydes, and its broad substrate specificity confers considerable utility as a biocatalyst, offering an environmentally benign alternative to chiral transition metal catalysis of the asymmetric aldol reaction.
Probab=27.10 E-value=1.8e+02 Score=24.49 Aligned_cols=77 Identities=14% Similarity=0.130 Sum_probs=45.0
Q ss_pred cccCcCCcchHHHHHHHHHHhCCcEEecCCCCC-CHHHHH--HHHHHhhhcCCcCCCCeEEeeccCCCCCCCCcHHHHHH
Q 021264 21 LGTWQADPGIVGNAVDVAIKAGYRHIDCARLYL-NEKEIG--FVLKKLFEDGVVKREDLWITSKLWCTDLAPKDVPEALD 97 (315)
Q Consensus 21 lG~~~~~~~~~~~~l~~A~~~Gi~~~DtA~~Yg-se~~lG--~~l~~~~~~~~~~R~~~~i~tK~~~~~~~~~~i~~~ve 97 (315)
+.+...++++.....+.|.++|..++=|+..|. ....++ +.+++.++ .+-.+.++.-+ . +.+.+.+.++
T Consensus 123 ~e~~~l~~~~i~~a~ria~e~GaD~IKTsTG~~~~~at~~~v~~~~~~~~----~~v~ik~aGGi--k--t~~~~l~~~~ 194 (203)
T cd00959 123 LETGLLTDEEIIKACEIAIEAGADFIKTSTGFGPGGATVEDVKLMKEAVG----GRVGVKAAGGI--R--TLEDALAMIE 194 (203)
T ss_pred EecCCCCHHHHHHHHHHHHHhCCCEEEcCCCCCCCCCCHHHHHHHHHHhC----CCceEEEeCCC--C--CHHHHHHHHH
Confidence 444444567889999999999999999998886 222222 23444311 12233333222 2 4555555555
Q ss_pred HHHHhcCC
Q 021264 98 NTLQDLQI 105 (315)
Q Consensus 98 ~sL~~Lg~ 105 (315)
.-..|+|+
T Consensus 195 ~g~~riG~ 202 (203)
T cd00959 195 AGATRIGT 202 (203)
T ss_pred hChhhccC
Confidence 55566665
No 226
>PLN02363 phosphoribosylanthranilate isomerase
Probab=26.97 E-value=1.9e+02 Score=25.67 Aligned_cols=68 Identities=12% Similarity=0.166 Sum_probs=40.0
Q ss_pred HHhcCCCccceEeeecCCCccCCCCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeeEeec-CCChhhHHHHHHhcCCCCcc
Q 021264 100 LQDLQIDYVDLYLIHWPARMKKGSVGFNPENLLPLDIPSTWRAMEALYDSGKARAIGVC-NFSTKKLGDLLEIARVPPAV 178 (315)
Q Consensus 100 L~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~L~~lk~~GkIr~iGvS-~~~~~~l~~~~~~~~~~~~~ 178 (315)
..++|.|++=+++...--+. .+.+.+-+....+ ....++.+||. +-+++.+.++++. ..+++
T Consensus 63 a~~~GaD~iGfIf~~~SpR~--------------Vs~e~a~~I~~~l-~~~~~~~VgVfv~~~~~~I~~~~~~--~~ld~ 125 (256)
T PLN02363 63 AVEAGADFIGMILWPKSKRS--------------ISLSVAKEISQVA-REGGAKPVGVFVDDDANTILRAADS--SDLEL 125 (256)
T ss_pred HHHcCCCEEEEecCCCCCCc--------------CCHHHHHHHHHhc-cccCccEEEEEeCCCHHHHHHHHHh--cCCCE
Confidence 44689999988743211111 3444443333333 22236679985 6677777777665 45589
Q ss_pred cccccC
Q 021264 179 NQVECH 184 (315)
Q Consensus 179 ~q~~~n 184 (315)
+|++-.
T Consensus 126 VQLHG~ 131 (256)
T PLN02363 126 VQLHGN 131 (256)
T ss_pred EEECCC
Confidence 999853
No 227
>PF01904 DUF72: Protein of unknown function DUF72; InterPro: IPR002763 The function of this family is unknown. Aquifex aeolicus has two copies of this protein. A probable aspartyl-tRNA synthetase from Escherichia coli [] belongs to this group.; PDB: 1VPY_A 1ZTV_A 1VPQ_A.
Probab=26.83 E-value=2.8e+02 Score=24.00 Aligned_cols=75 Identities=11% Similarity=0.220 Sum_probs=42.1
Q ss_pred HHHHHHhCCcEEec-CCCCC--CHHHHHHHHHHhhhcCCcCCCCeEEeeccCCC---C--C--CCCcHHHHHHHHHHhcC
Q 021264 35 VDVAIKAGYRHIDC-ARLYL--NEKEIGFVLKKLFEDGVVKREDLWITSKLWCT---D--L--APKDVPEALDNTLQDLQ 104 (315)
Q Consensus 35 l~~A~~~Gi~~~Dt-A~~Yg--se~~lG~~l~~~~~~~~~~R~~~~i~tK~~~~---~--~--~~~~i~~~ve~sL~~Lg 104 (315)
|+...+. .+.+.. +..|+ +.+++.++.++ .++++..+-|+... . . ..+.+.+.+-+.++-||
T Consensus 12 L~~Ya~~-F~~VEvn~TFY~~P~~~t~~~W~~~-------~p~~F~F~vK~~~~iTH~~~l~~~~~~~~~~F~~~~~~L~ 83 (230)
T PF01904_consen 12 LAYYARH-FNTVEVNSTFYRIPSPETVARWREQ-------TPEGFRFSVKAPQLITHERRLRDCAEELWRRFLEALEPLG 83 (230)
T ss_dssp HHHHCCT--SEEEE-HHCCSSS-HHHHHHHHCT-------S-TT-EEEEE--CCCCCCCHCGSSHHHHHHHHHHHCHHHH
T ss_pred HHHHHHh-CCeEEECcccCCCCCHHHHHHHHhh-------CCCCeEEEEeccHHheecccccccHHHHHHHHHHHHHHHh
Confidence 3333333 455544 45687 68888888776 36889999999541 1 1 12334355566888888
Q ss_pred CCccceEeeecCCC
Q 021264 105 IDYVDLYLIHWPAR 118 (315)
Q Consensus 105 ~d~iDl~~lH~p~~ 118 (315)
+++..+++--|-.
T Consensus 84 -~klg~iL~Q~Pps 96 (230)
T PF01904_consen 84 -EKLGPILFQFPPS 96 (230)
T ss_dssp -T-EEEEEEE--TT
T ss_pred -hcceEEEEEcCCC
Confidence 8899998887643
No 228
>COG2355 Zn-dependent dipeptidase, microsomal dipeptidase homolog [Amino acid transport and metabolism]
Probab=26.75 E-value=5e+02 Score=23.83 Aligned_cols=108 Identities=15% Similarity=0.087 Sum_probs=70.8
Q ss_pred hHHHHHHHHHHhCCcEEecCCCCCCHHHHHHHHHHhhhcCCcCCCCeEEeeccCC---CCCCCCcHHHHHHHHHHhcCCC
Q 021264 30 IVGNAVDVAIKAGYRHIDCARLYLNEKEIGFVLKKLFEDGVVKREDLWITSKLWC---TDLAPKDVPEALDNTLQDLQID 106 (315)
Q Consensus 30 ~~~~~l~~A~~~Gi~~~DtA~~Ygse~~lG~~l~~~~~~~~~~R~~~~i~tK~~~---~~~~~~~i~~~ve~sL~~Lg~d 106 (315)
.-.++|+.+-+.|| .+|.|+. +++.+=.++.- -+...|+|.... .++.++-..++++...++=|+
T Consensus 150 ~Gk~lV~~~N~LgI-iiDlSH~--s~kt~~Dvl~~--------s~~PviaSHSN~~al~~h~RNl~D~qlkaI~~~gGv- 217 (313)
T COG2355 150 FGKELVREMNELGI-IIDLSHL--SDKTFWDVLDL--------SKAPVVASHSNARALVDHPRNLSDEQLKAIAETGGV- 217 (313)
T ss_pred HHHHHHHHHHhcCC-EEEeccc--CCccHHHHHhc--------cCCceEEecCCchhccCCCCCCCHHHHHHHHhcCCE-
Confidence 35689999999998 5898765 34444455543 233456666643 244555566778877777775
Q ss_pred ccceEeeecCCCccCCCCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeeEeecC
Q 021264 107 YVDLYLIHWPARMKKGSVGFNPENLLPLDIPSTWRAMEALYDSGKARAIGVCN 159 (315)
Q Consensus 107 ~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~L~~lk~~GkIr~iGvS~ 159 (315)
|.+.++-........ .+ .+++++.+.+..+++-+=++++|+.+
T Consensus 218 -Igv~~~~~fl~~~~~------~~---atldd~v~hI~h~v~~~G~dhVglGs 260 (313)
T COG2355 218 -IGVNFIPAFLRPGGA------AR---ATLDDLVRHIDHFVELVGIDHVGLGS 260 (313)
T ss_pred -EEEEeehhhccCCCC------CC---CCHHHHHHHHHHHHHhcCcceeEecc
Confidence 555444322221000 00 57899999999999998899999987
No 229
>cd03317 NAAAR N-acylamino acid racemase (NAAAR), an octameric enzyme that catalyzes the racemization of N-acylamino acids. NAAARs act on a broad range of N-acylamino acids rather than amino acids. Enantiopure amino acids are of industrial interest as chiral building blocks for antibiotics, herbicides, and drugs. NAAAR is a member of the enolase superfamily, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=26.64 E-value=2.9e+02 Score=25.41 Aligned_cols=143 Identities=14% Similarity=0.168 Sum_probs=79.9
Q ss_pred chHHHHHHHHHHhCCcEEecCCCCCC---HHHHHHHHHHhhhcCCcCCCCeEEeeccCCCCCCCCcHHHHHHHHHHhcCC
Q 021264 29 GIVGNAVDVAIKAGYRHIDCARLYLN---EKEIGFVLKKLFEDGVVKREDLWITSKLWCTDLAPKDVPEALDNTLQDLQI 105 (315)
Q Consensus 29 ~~~~~~l~~A~~~Gi~~~DtA~~Ygs---e~~lG~~l~~~~~~~~~~R~~~~i~tK~~~~~~~~~~i~~~ve~sL~~Lg~ 105 (315)
++..+.+..+.+.|++.|=.=- +. .+.+ +++++. ++ ++-|.-=.. ...+.+.. . .+++|
T Consensus 139 ~~~~~~~~~~~~~Gf~~~KiKv--~~~~d~~~l-~~vr~~-----~g--~~~l~lDaN-~~~~~~~a----~-~~~~l-- 200 (354)
T cd03317 139 EQLLKQIERYLEEGYKRIKLKI--KPGWDVEPL-KAVRER-----FP--DIPLMADAN-SAYTLADI----P-LLKRL-- 200 (354)
T ss_pred HHHHHHHHHHHHcCCcEEEEec--ChHHHHHHH-HHHHHH-----CC--CCeEEEECC-CCCCHHHH----H-HHHHh--
Confidence 5566777777788888764311 21 1222 233432 22 333332221 12232221 2 24444
Q ss_pred CccceEeeecCCCccCCCCCCCCCCCCCCCHHHHHHHHHHHHhcCCe-eeEeecCCChhhHHHHHHhcCCCCcccccccC
Q 021264 106 DYVDLYLIHWPARMKKGSVGFNPENLLPLDIPSTWRAMEALYDSGKA-RAIGVCNFSTKKLGDLLEIARVPPAVNQVECH 184 (315)
Q Consensus 106 d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~L~~lk~~GkI-r~iGvS~~~~~~l~~~~~~~~~~~~~~q~~~n 184 (315)
+..++.++-.|-. .+-++.+.++++.-.+ -+.|=|.++...+..+++... .+++|+...
T Consensus 201 ~~~~i~~iEeP~~------------------~~d~~~~~~l~~~~~~pia~dEs~~~~~~~~~~~~~~~--~d~~~ik~~ 260 (354)
T cd03317 201 DEYGLLMIEQPLA------------------ADDLIDHAELQKLLKTPICLDESIQSAEDARKAIELGA--CKIINIKPG 260 (354)
T ss_pred hcCCccEEECCCC------------------hhHHHHHHHHHhhcCCCEEeCCccCCHHHHHHHHHcCC--CCEEEeccc
Confidence 3356666666543 1236667777665432 256777788888888877543 367777765
Q ss_pred ccc---chHHHHHHHHHcCceEEEecCC
Q 021264 185 SSW---QQQKLHAFCKSKGVHLSGYSPL 209 (315)
Q Consensus 185 ~~~---~~~~~~~~~~~~gi~v~~~~pl 209 (315)
.+- ...++...|+.+|+.++..+..
T Consensus 261 ~~GGit~~~~i~~~A~~~gi~~~~g~~~ 288 (354)
T cd03317 261 RVGGLTEALKIHDLCQEHGIPVWCGGML 288 (354)
T ss_pred ccCCHHHHHHHHHHHHHcCCcEEecCcc
Confidence 443 2367899999999998875443
No 230
>PLN02389 biotin synthase
Probab=26.56 E-value=5.5e+02 Score=24.21 Aligned_cols=105 Identities=11% Similarity=0.052 Sum_probs=57.1
Q ss_pred CCcchHHHHHHHHHHhCCcEEecCC----CCCC---HHHHHHHHHHhhhcCCcCCCCeEEeeccCCCCCCCCcHHHHHHH
Q 021264 26 ADPGIVGNAVDVAIKAGYRHIDCAR----LYLN---EKEIGFVLKKLFEDGVVKREDLWITSKLWCTDLAPKDVPEALDN 98 (315)
Q Consensus 26 ~~~~~~~~~l~~A~~~Gi~~~DtA~----~Ygs---e~~lG~~l~~~~~~~~~~R~~~~i~tK~~~~~~~~~~i~~~ve~ 98 (315)
.+.+++.+.++.+.+.|++.|-... ..+. -..+-+.++.. +...+.|+...+. +....-+
T Consensus 116 Ls~EeIl~~a~~~~~~G~~~~~ivts~rg~~~e~~~~e~i~eiir~i------k~~~l~i~~s~G~-------l~~E~l~ 182 (379)
T PLN02389 116 MSKDDVLEAAKRAKEAGSTRFCMGAAWRDTVGRKTNFNQILEYVKEI------RGMGMEVCCTLGM-------LEKEQAA 182 (379)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEEecccCCCCChhHHHHHHHHHHHH------hcCCcEEEECCCC-------CCHHHHH
Confidence 4667888888888899999874321 1221 12344555553 2223445433321 2344455
Q ss_pred HHHhcCCCccceEeeecCCCccCCCCCCCCCCCCCCCHHHHHHHHHHHHhcCC
Q 021264 99 TLQDLQIDYVDLYLIHWPARMKKGSVGFNPENLLPLDIPSTWRAMEALYDSGK 151 (315)
Q Consensus 99 sL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~L~~lk~~Gk 151 (315)
.|+..|+|++-. +.+.. +.. +. .-.-....++.++.++.+++.|.
T Consensus 183 ~LkeAGld~~~~----~LeTs-~~~--y~-~i~~~~s~e~rl~ti~~a~~~Gi 227 (379)
T PLN02389 183 QLKEAGLTAYNH----NLDTS-REY--YP-NVITTRSYDDRLETLEAVREAGI 227 (379)
T ss_pred HHHHcCCCEEEe----eecCC-hHH--hC-CcCCCCCHHHHHHHHHHHHHcCC
Confidence 566778776433 33311 100 00 00011467889999999999985
No 231
>COG1831 Predicted metal-dependent hydrolase (urease superfamily) [General function prediction only]
Probab=26.47 E-value=2.4e+02 Score=25.26 Aligned_cols=66 Identities=21% Similarity=0.267 Sum_probs=44.2
Q ss_pred HHHHHHHHHHHHhcCCeeeEeecCCCh------------hhHHHHHHhcCCCCcccccccCcccch--HHHHHHHHHcCc
Q 021264 136 IPSTWRAMEALYDSGKARAIGVCNFST------------KKLGDLLEIARVPPAVNQVECHSSWQQ--QKLHAFCKSKGV 201 (315)
Q Consensus 136 ~~~~~~~L~~lk~~GkIr~iGvS~~~~------------~~l~~~~~~~~~~~~~~q~~~n~~~~~--~~~~~~~~~~gi 201 (315)
....++..+++..+|++-+||=+.+.- +.+..+.+.+..--..+|++.-..... .++-+++++.|+
T Consensus 106 m~~~lelA~k~v~eg~avaiGEvGrPHypVs~~v~~~~n~vl~~a~elA~dvdc~vqLHtes~~~~~~~~i~~~ak~~G~ 185 (285)
T COG1831 106 MRHALELAAKLVEEGKAVAIGEVGRPHYPVSEEVWEASNEVLEYAMELAKDVDCAVQLHTESLDEETYEEIAEMAKEAGI 185 (285)
T ss_pred HHHHHHHHHHHHhccceeeeeccCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCcEEEecCCCChHHHHHHHHHHHHhCC
Confidence 446678888999999988887666431 233445555543345677776555543 678888998886
No 232
>PF01081 Aldolase: KDPG and KHG aldolase; InterPro: IPR000887 4-Hydroxy-2-oxoglutarate aldolase (4.1.3.16 from EC) (KHG-aldolase) catalyzes the interconversion of 4-hydroxy-2-oxoglutarate into pyruvate and glyoxylate. Phospho-2-dehydro-3-deoxygluconate aldolase (4.1.2.14 from EC) (KDPG-aldolase) catalyzes the interconversion of 6-phospho-2-dehydro-3-deoxy-D-gluconate into pyruvate and glyceraldehyde 3-phosphate. These two enzymes are structurally and functionally related []. They are both homotrimeric proteins of approximately 220 amino-acid residues. They are class I aldolases whose catalytic mechanism involves the formation of a Schiff-base intermediate between the substrate and the epsilon-amino group of a lysine residue. In both enzymes, an arginine is required for catalytic activity.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VCR_A 1FQ0_A 1EUN_A 1EUA_B 1FWR_A 2C0A_B 1WBH_A 1WAU_A 2YW3_B 2YW4_A ....
Probab=26.42 E-value=1.3e+02 Score=25.56 Aligned_cols=59 Identities=12% Similarity=0.154 Sum_probs=36.1
Q ss_pred HHHHHHHHhcCCeeeEeecCC-ChhhHHHHHHhcCCCCcccccccCcccchHHHHHHHHHcCceEEE
Q 021264 140 WRAMEALYDSGKARAIGVCNF-STKKLGDLLEIARVPPAVNQVECHSSWQQQKLHAFCKSKGVHLSG 205 (315)
Q Consensus 140 ~~~L~~lk~~GkIr~iGvS~~-~~~~l~~~~~~~~~~~~~~q~~~n~~~~~~~~~~~~~~~gi~v~~ 205 (315)
++.++.++++-.=-.+|..+. +.++++++++... ++-.++. -+++++++|+++|+.+++
T Consensus 47 ~~~I~~l~~~~p~~~vGAGTV~~~e~a~~a~~aGA------~FivSP~-~~~~v~~~~~~~~i~~iP 106 (196)
T PF01081_consen 47 LEAIEALRKEFPDLLVGAGTVLTAEQAEAAIAAGA------QFIVSPG-FDPEVIEYAREYGIPYIP 106 (196)
T ss_dssp HHHHHHHHHHHTTSEEEEES--SHHHHHHHHHHT-------SEEEESS---HHHHHHHHHHTSEEEE
T ss_pred HHHHHHHHHHCCCCeeEEEeccCHHHHHHHHHcCC------CEEECCC-CCHHHHHHHHHcCCcccC
Confidence 444444443311135888885 7788888887542 2222221 247999999999999998
No 233
>PRK06256 biotin synthase; Validated
Probab=26.18 E-value=5e+02 Score=23.63 Aligned_cols=72 Identities=13% Similarity=0.065 Sum_probs=41.6
Q ss_pred CCHHHHHHHHHHHHhcCCeeeEe-ecCCCh--h---hHHHHHHhcCCCCcccccccCcccchHHHHHHHHHcCceEEEe
Q 021264 134 LDIPSTWRAMEALYDSGKARAIG-VCNFST--K---KLGDLLEIARVPPAVNQVECHSSWQQQKLHAFCKSKGVHLSGY 206 (315)
Q Consensus 134 ~~~~~~~~~L~~lk~~GkIr~iG-vS~~~~--~---~l~~~~~~~~~~~~~~q~~~n~~~~~~~~~~~~~~~gi~v~~~ 206 (315)
.+.+++++.++.+++.|..+..= .+.+.+ . .+.++++...-.+. +.+..+.-....+.++..++.|+..+..
T Consensus 91 ~s~eeI~~~~~~~~~~g~~~~~l~~~g~~p~~~~~~~~~e~i~~i~~~~~-i~~~~~~g~l~~e~l~~LkeaG~~~v~~ 168 (336)
T PRK06256 91 LDIEELIEAAKEAIEEGAGTFCIVASGRGPSGKEVDQVVEAVKAIKEETD-LEICACLGLLTEEQAERLKEAGVDRYNH 168 (336)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEEecCCCCCchHHHHHHHHHHHHHhcCC-CcEEecCCcCCHHHHHHHHHhCCCEEec
Confidence 57899999999999998654321 223322 2 33344433221121 1222233334578889999999887765
No 234
>cd01976 Nitrogenase_MoFe_alpha Nitrogenase_MoFe_alpha_II: Nitrogenase MoFe protein, beta subunit. A group of proteins similar to the alpha subunit of the MoFe protein of the molybdenum (Mo-) nitrogenase. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. The Mo-nitrogenase is the most widespread and best characterized of these systems. Mo-nitrogenase consists of the MoFe protein (component 1) and the Fe protein (component 2). MoFe is an alpha2beta2 tetramer. Each alphabeta pair of MoFe contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha subunit. The Fe protein contains a single [4Fe-4S] cluster. Electrons are transferred from the [4Fe-4S] cluster of the Fe protein to the P-cluster of the MoFe and in turn to FeMoCo, the site of substrate reduction.
Probab=25.92 E-value=5.8e+02 Score=24.29 Aligned_cols=144 Identities=10% Similarity=0.052 Sum_probs=76.8
Q ss_pred CCCCHHHHHHHHHHhhhcCCcCC-CCeEEeeccCCCCCCCCcHHHHHHHHHHhcCCCccceEeeecCCCccCCCCCCCCC
Q 021264 51 LYLNEKEIGFVLKKLFEDGVVKR-EDLWITSKLWCTDLAPKDVPEALDNTLQDLQIDYVDLYLIHWPARMKKGSVGFNPE 129 (315)
Q Consensus 51 ~Ygse~~lG~~l~~~~~~~~~~R-~~~~i~tK~~~~~~~~~~i~~~ve~sL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~ 129 (315)
.||.++.|-++|++..+.. ++ +-++|.|-.. ...--+.+..-+++.-++++ ++++.+|.|........
T Consensus 79 VfGg~~kL~~~I~~~~~~~--~p~~~I~V~tTC~-~~iIGdDi~~v~~~~~~~~~---~pvi~v~t~gf~g~s~~----- 147 (421)
T cd01976 79 VFGGDKKLAKAIDEAYELF--PLNKGISVQSECP-VGLIGDDIEAVARKASKELG---IPVVPVRCEGFRGVSQS----- 147 (421)
T ss_pred ecCCHHHHHHHHHHHHHhC--CCccEEEEECCCh-HHHhccCHHHHHHHHHHhhC---CCEEEEeCCCccCCccc-----
Confidence 4788888899998876554 44 4466665542 33334455555555555554 68899998876421100
Q ss_pred CCCCCCHH----HHHHHHHHH-----HhcCCeeeEeecCCC--hhhHHHHHHhcCCCCccccc--------------ccC
Q 021264 130 NLLPLDIP----STWRAMEAL-----YDSGKARAIGVCNFS--TKKLGDLLEIARVPPAVNQV--------------ECH 184 (315)
Q Consensus 130 ~~~~~~~~----~~~~~L~~l-----k~~GkIr~iGvS~~~--~~~l~~~~~~~~~~~~~~q~--------------~~n 184 (315)
.... .+++.|... +..++|--||-.++. .+.+.++++..++++...-. .+|
T Consensus 148 ----~G~~~a~~ai~~~l~~~~~~~~~~~~~VNiiG~~~~~~d~~el~~lL~~~Gi~v~~~~~~~~t~eei~~~~~A~ln 223 (421)
T cd01976 148 ----LGHHIANDAIRDHILGKRNEFEPTPYDVNIIGDYNIGGDAWASRILLEEMGLRVVAQWSGDGTLNEMENAHKAKLN 223 (421)
T ss_pred ----HHHHHHHHHHHHHHhccCCccCCCCCeEEEEecCCCCccHHHHHHHHHHcCCeEEEEeCCCCCHHHHHhcccCCEE
Confidence 1111 223333221 124668888855543 34567777776653321111 112
Q ss_pred cccch---HHHHHHHH-HcCceEEEecCC
Q 021264 185 SSWQQ---QKLHAFCK-SKGVHLSGYSPL 209 (315)
Q Consensus 185 ~~~~~---~~~~~~~~-~~gi~v~~~~pl 209 (315)
+.... ..+.++.+ ++|++.+...|+
T Consensus 224 iv~~~~~~~~~a~~Le~~fGiP~~~~~p~ 252 (421)
T cd01976 224 LIHCYRSMNYIARMMEEKYGIPWMEYNFF 252 (421)
T ss_pred EEECcHHHHHHHHHHHHHhCCcEEecccC
Confidence 22211 12344444 579999988765
No 235
>cd03328 MR_like_3 Mandelate racemase (MR)-like subfamily of the enolase superfamily, subgroup 3. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. This subgroup's function is unknown.
Probab=25.79 E-value=1.8e+02 Score=26.98 Aligned_cols=66 Identities=17% Similarity=0.140 Sum_probs=41.2
Q ss_pred HHHHHHHHHhc--CCee-eEeecCCChhhHHHHHHhcCCCCcccccccCccc---chHHHHHHHHHcCceEEEe
Q 021264 139 TWRAMEALYDS--GKAR-AIGVCNFSTKKLGDLLEIARVPPAVNQVECHSSW---QQQKLHAFCKSKGVHLSGY 206 (315)
Q Consensus 139 ~~~~L~~lk~~--GkIr-~iGvS~~~~~~l~~~~~~~~~~~~~~q~~~n~~~---~~~~~~~~~~~~gi~v~~~ 206 (315)
-++.+.+|+++ -.|. ..|=|.++...+.++++... .+++|....-+- ...++...|+.+|+.++.+
T Consensus 221 d~~~~~~l~~~~~~~iPIa~gE~~~~~~~~~~li~~~a--~div~~d~~~~GGit~~~~ia~~A~a~gi~~~~h 292 (352)
T cd03328 221 DLAGLRLVRERGPAGMDIAAGEYAYTLAYFRRLLEAHA--VDVLQADVTRCGGVTGFLQAAALAAAHHVDLSAH 292 (352)
T ss_pred hHHHHHHHHhhCCCCCCEEecccccCHHHHHHHHHcCC--CCEEecCccccCCHHHHHHHHHHHHHcCCeeccC
Confidence 35667777666 2222 45556667777777766533 367777665432 2256778888888887765
No 236
>cd01966 Nitrogenase_NifN_1 Nitrogenase_nifN1: A subgroup of the NifN subunit of the NifEN complex: NifN forms an alpha2beta2 tetramer with NifE. NifN and nifE are structurally homologous to nitrogenase MoFe protein beta and alpha subunits respectively. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of the MoFe protein. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to the NifEN complex where it is further processed to FeMoco. The nifEN bound precursor of FeMoco has been identified as a molybdenum-free, iron- and sulfur- containing analog of FeMoco. It has been suggested that this nifEN bound precursor also acts as a cofactor precursor in nitrogenase systems which require a cofactor other than FeMoco: i.e. iron-vanadium cofactor (FeVco) or iron only cofactor (FeFeco).
Probab=25.78 E-value=4.5e+02 Score=25.06 Aligned_cols=112 Identities=14% Similarity=0.120 Sum_probs=59.7
Q ss_pred CCCCHHHHHHHHHHhhhcCCcCCCCeEEeeccCCCCCCCCcHHHHHHHHHHhcC-CCccceEeeecCCCccCCCCCCCCC
Q 021264 51 LYLNEKEIGFVLKKLFEDGVVKREDLWITSKLWCTDLAPKDVPEALDNTLQDLQ-IDYVDLYLIHWPARMKKGSVGFNPE 129 (315)
Q Consensus 51 ~Ygse~~lG~~l~~~~~~~~~~R~~~~i~tK~~~~~~~~~~i~~~ve~sL~~Lg-~d~iDl~~lH~p~~~~~~~~~~~~~ 129 (315)
.||.++.|-+++++..++. +++-++|.|-... ..--+.+..-+++.-++.. ...+.++.+|.|+......
T Consensus 62 VfGg~~~L~~~i~~~~~~~--~p~~I~V~ttc~~-eiIGdDi~~v~~~~~~~~p~~~~~~vi~v~t~gf~g~~~------ 132 (417)
T cd01966 62 ILGGGENLEEALDTLAERA--KPKVIGLLSTGLT-ETRGEDIAGALKQFRAEHPELADVPVVYVSTPDFEGSLE------ 132 (417)
T ss_pred EECCHHHHHHHHHHHHHhc--CCCEEEEECCCcc-cccccCHHHHHHHHHhhccccCCCeEEEecCCCCCCcHH------
Confidence 3788888888888765443 4455666666533 3333445554444333311 0137788899887642110
Q ss_pred CCCCCCHHHHHHHHHH-H--------HhcCCeeeEeecCCCh---hhHHHHHHhcCCC
Q 021264 130 NLLPLDIPSTWRAMEA-L--------YDSGKARAIGVCNFST---KKLGDLLEIARVP 175 (315)
Q Consensus 130 ~~~~~~~~~~~~~L~~-l--------k~~GkIr~iGvS~~~~---~~l~~~~~~~~~~ 175 (315)
......+++|-+ + +.+++|--||-++.++ +.+.++++..++.
T Consensus 133 ----~G~~~a~~al~~~l~~~~~~~~~~~~~VNiig~~~~~~~D~~eik~lL~~~Gl~ 186 (417)
T cd01966 133 ----DGWAAAVEAIIEALVEPGSRTVTDPRQVNLLPGAHLTPGDVEELKDIIEAFGLE 186 (417)
T ss_pred ----HHHHHHHHHHHHHhcccccccCCCCCcEEEECCCCCCHHHHHHHHHHHHHcCCc
Confidence 223333433332 2 2356688887555444 4455555555544
No 237
>PLN00191 enolase
Probab=25.77 E-value=4.6e+02 Score=25.46 Aligned_cols=91 Identities=9% Similarity=0.072 Sum_probs=59.3
Q ss_pred HHHHhcCCCccceEeeecCCCccCCCCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeeEe-ec-CCChhhHHHHHHhcCCC
Q 021264 98 NTLQDLQIDYVDLYLIHWPARMKKGSVGFNPENLLPLDIPSTWRAMEALYDSGKARAIG-VC-NFSTKKLGDLLEIARVP 175 (315)
Q Consensus 98 ~sL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~L~~lk~~GkIr~iG-vS-~~~~~~l~~~~~~~~~~ 175 (315)
+-++.|- +..++.+|-.|-.. +-|+.+.+|.+..++.-+| =+ ..++..+.++++...
T Consensus 302 ~~~~~L~-~~y~I~~IEDPl~~------------------~D~eg~~~Lt~~~~ipIvgDE~~vtn~~~l~~~I~~~a-- 360 (457)
T PLN00191 302 DLYKEFV-SDYPIVSIEDPFDQ------------------DDWEHWAKLTSLEDVQIVGDDLLVTNPKRVAKAIQEKA-- 360 (457)
T ss_pred HHHHHHh-hcCCcEEEECCCCc------------------ccHHHHHHHHccCCCcEEccCcccCCHHHHHHHHHhCC--
Confidence 3344442 44567778776542 3377788888888887666 22 255778888877643
Q ss_pred CcccccccCccc---chHHHHHHHHHcCceEEEecCC
Q 021264 176 PAVNQVECHSSW---QQQKLHAFCKSKGVHLSGYSPL 209 (315)
Q Consensus 176 ~~~~q~~~n~~~---~~~~~~~~~~~~gi~v~~~~pl 209 (315)
.+++++..+-.- ...++.+.|+.+|+.++.-...
T Consensus 361 ad~i~iKl~qiGGITea~~~a~lA~~~G~~~~ishrs 397 (457)
T PLN00191 361 CNALLLKVNQIGTVTESIEAVKMSKAAGWGVMTSHRS 397 (457)
T ss_pred CCEEEecccccCCHHHHHHHHHHHHHCCCEEEeCCCC
Confidence 366666665433 2267899999999999874433
No 238
>PF04748 Polysacc_deac_2: Divergent polysaccharide deacetylase; InterPro: IPR006837 This is a family of uncharacterised proteins that includes YibQ.; PDB: 2QV5_A 2NLY_A.
Probab=25.66 E-value=2.8e+02 Score=23.81 Aligned_cols=84 Identities=14% Similarity=0.175 Sum_probs=46.9
Q ss_pred CCcchHHHHHHHHHHh-----CCcEEecCCCCCCHHHHHHHHHHhhhcCCcCCCCeEEeeccCC----------------
Q 021264 26 ADPGIVGNAVDVAIKA-----GYRHIDCARLYLNEKEIGFVLKKLFEDGVVKREDLWITSKLWC---------------- 84 (315)
Q Consensus 26 ~~~~~~~~~l~~A~~~-----Gi~~~DtA~~Ygse~~lG~~l~~~~~~~~~~R~~~~i~tK~~~---------------- 84 (315)
.++++....++.+++. |+|--=-+....++..+...++..- .|.-+||-++...
T Consensus 71 ~~~~~i~~~l~~al~~vp~a~GvnNhmGS~~T~~~~~m~~vl~~l~-----~~gl~FvDS~T~~~s~a~~~A~~~gvp~~ 145 (213)
T PF04748_consen 71 MSEEEIRKRLEAALARVPGAVGVNNHMGSRFTSDREAMRWVLEVLK-----ERGLFFVDSRTTPRSVAPQVAKELGVPAA 145 (213)
T ss_dssp S-HHHHHHHHHHHHCCSTT-SEEEEEE-CCHHC-HHHHHHHHHHHH-----HTT-EEEE-S--TT-SHHHHHHHCT--EE
T ss_pred CCHHHHHHHHHHHHHHCCCcEEEecCCCccccCCHHHHHHHHHHHH-----HcCCEEEeCCCCcccHHHHHHHHcCCCEE
Confidence 5778888888888876 4443322222224677776666541 3555666444421
Q ss_pred -------CCCCCCcHHHHHHHHHHhcCCCccceEeee
Q 021264 85 -------TDLAPKDVPEALDNTLQDLQIDYVDLYLIH 114 (315)
Q Consensus 85 -------~~~~~~~i~~~ve~sL~~Lg~d~iDl~~lH 114 (315)
.+.+.+.|++++++..+.-+..-.-+..-|
T Consensus 146 ~rdvfLD~~~~~~~I~~ql~~~~~~A~~~G~aI~Igh 182 (213)
T PF04748_consen 146 RRDVFLDNDQDEAAIRRQLDQAARIARKQGSAIAIGH 182 (213)
T ss_dssp E-SEETTST-SHHHHHHHHHHHHHHHHCCSEEEEEEE
T ss_pred eeceecCCCCCHHHHHHHHHHHHHhhhhcCcEEEEEc
Confidence 234566788888887777776656666666
No 239
>cd01320 ADA Adenosine deaminase (ADA) is a monomeric zinc dependent enzyme which catalyzes the irreversible hydrolytic deamination of both adenosine, as well as desoxyadenosine, to ammonia and inosine or desoxyinosine, respectively. ADA plays an important role in the purine pathway. Low, as well as high levels of ADA activity have been linked to several diseases.
Probab=25.63 E-value=5e+02 Score=23.41 Aligned_cols=71 Identities=11% Similarity=0.060 Sum_probs=38.0
Q ss_pred CHHHHHHHHHHHHhcCCeeeEeecCC-ChhhHHHHHHhcCCCCcccccccCcccchHHHHHHHHHcCceEEEecCC
Q 021264 135 DIPSTWRAMEALYDSGKARAIGVCNF-STKKLGDLLEIARVPPAVNQVECHSSWQQQKLHAFCKSKGVHLSGYSPL 209 (315)
Q Consensus 135 ~~~~~~~~L~~lk~~GkIr~iGvS~~-~~~~l~~~~~~~~~~~~~~q~~~n~~~~~~~~~~~~~~~gi~v~~~~pl 209 (315)
+.+.....++.+++.|.--.+=++.. +.+.+..+++..+. ..+ .+...+...++.++..++.|+.+.. .|.
T Consensus 171 ~~~~~~~~~~~A~~~g~~v~~H~~E~~~~~~~~~a~~~~g~--~~i-~H~~~l~~~~~~~~~l~~~gi~v~~-~P~ 242 (325)
T cd01320 171 PPEKFVRAFQRAREAGLRLTAHAGEAGGPESVRDALDLLGA--ERI-GHGIRAIEDPELVKRLAERNIPLEV-CPT 242 (325)
T ss_pred CHHHHHHHHHHHHHCCCceEEeCCCCCCHHHHHHHHHHcCC--ccc-chhhccCccHHHHHHHHHcCCeEEE-CCC
Confidence 45566777888888776433333222 23444445543322 211 1112222235689999999998864 454
No 240
>PF14871 GHL6: Hypothetical glycosyl hydrolase 6
Probab=25.61 E-value=70 Score=25.25 Aligned_cols=21 Identities=14% Similarity=0.461 Sum_probs=19.2
Q ss_pred HHHHHHHHHcCceEEEecCCC
Q 021264 190 QKLHAFCKSKGVHLSGYSPLG 210 (315)
Q Consensus 190 ~~~~~~~~~~gi~v~~~~pl~ 210 (315)
.++++.|++.||.|++|-.+.
T Consensus 47 ge~v~a~h~~Girv~ay~~~~ 67 (132)
T PF14871_consen 47 GEQVEACHERGIRVPAYFDFS 67 (132)
T ss_pred HHHHHHHHHCCCEEEEEEeee
Confidence 789999999999999998874
No 241
>cd00950 DHDPS Dihydrodipicolinate synthase (DHDPS) is a key enzyme in lysine biosynthesis. It catalyzes the aldol condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a Schiff base formation between pyruvate and a lysine residue. The functional enzyme is a homotetramer consisting of a dimer of dimers. DHDPS is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways.
Probab=25.59 E-value=4.7e+02 Score=23.13 Aligned_cols=29 Identities=10% Similarity=0.071 Sum_probs=23.6
Q ss_pred cCCcchHHHHHHHHHHhCCcEEecCCCCC
Q 021264 25 QADPGIVGNAVDVAIKAGYRHIDCARLYL 53 (315)
Q Consensus 25 ~~~~~~~~~~l~~A~~~Gi~~~DtA~~Yg 53 (315)
..+.+...+.++..++.|++-+=.....|
T Consensus 17 ~iD~~~~~~~i~~l~~~Gv~gl~v~GstG 45 (284)
T cd00950 17 SVDFDALERLIEFQIENGTDGLVVCGTTG 45 (284)
T ss_pred CcCHHHHHHHHHHHHHcCCCEEEECCCCc
Confidence 46778888999999999999887666655
No 242
>PRK14478 nitrogenase molybdenum-cofactor biosynthesis protein NifE; Provisional
Probab=25.55 E-value=6.3e+02 Score=24.55 Aligned_cols=109 Identities=11% Similarity=0.154 Sum_probs=62.4
Q ss_pred CCCCHHHHHHHHHHhhhcCCcCCCCeEEeeccCCCCCCCCcHHHHHHHHHHhcCCCccceEeeecCCCccCCCCCCCCCC
Q 021264 51 LYLNEKEIGFVLKKLFEDGVVKREDLWITSKLWCTDLAPKDVPEALDNTLQDLQIDYVDLYLIHWPARMKKGSVGFNPEN 130 (315)
Q Consensus 51 ~Ygse~~lG~~l~~~~~~~~~~R~~~~i~tK~~~~~~~~~~i~~~ve~sL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~ 130 (315)
.||.++.|-++|.+..++. +++-++|.|-. ....--+.+..-+++.-++++ +.++.++.|.......
T Consensus 100 VfGg~~kL~~~I~ei~~~~--~P~~I~V~tTC-~~~lIGdDi~~v~~~~~~~~~---~pvi~v~t~Gf~g~~~------- 166 (475)
T PRK14478 100 VFGGEKKLFKAIDEIIEKY--APPAVFVYQTC-VVALIGDDIDAVCKRAAEKFG---IPVIPVNSPGFVGNKN------- 166 (475)
T ss_pred eeCCHHHHHHHHHHHHHhc--CCCEEEEeCCC-hHHHhccCHHHHHHHHHHhhC---CCEEEEECCCcccchh-------
Confidence 4788888888888775543 34445555554 334334455555555444554 6788888877642110
Q ss_pred CCCCCHHHHHHHHHH-HH--------hcCCeeeEeecCCCh--hhHHHHHHhcCCC
Q 021264 131 LLPLDIPSTWRAMEA-LY--------DSGKARAIGVCNFST--KKLGDLLEIARVP 175 (315)
Q Consensus 131 ~~~~~~~~~~~~L~~-lk--------~~GkIr~iGvS~~~~--~~l~~~~~~~~~~ 175 (315)
......+++|-+ +. ..+.|--||-.+... +.+.++++..++.
T Consensus 167 ---~G~~~a~~al~~~l~~~~~~~~~~~~~VNiiG~~~~~gd~~elk~lL~~~Gl~ 219 (475)
T PRK14478 167 ---LGNKLAGEALLDHVIGTVEPEDTTPYDINILGEYNLAGELWQVKPLLDRLGIR 219 (475)
T ss_pred ---hhHHHHHHHHHHHHhccCCccCCCCCeEEEEeCCCCCCCHHHHHHHHHHcCCe
Confidence 223344444433 32 245688888665443 4677777776654
No 243
>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]
Probab=25.49 E-value=1.5e+02 Score=25.78 Aligned_cols=36 Identities=11% Similarity=0.112 Sum_probs=29.5
Q ss_pred CCHHHHHHHHHHHHhcCCeeeEeecCCChhhHHHHHHh
Q 021264 134 LDIPSTWRAMEALYDSGKARAIGVCNFSTKKLGDLLEI 171 (315)
Q Consensus 134 ~~~~~~~~~L~~lk~~GkIr~iGvS~~~~~~l~~~~~~ 171 (315)
.......+.+.+++.+|+ .+=+|+|....++++++.
T Consensus 167 ~~~r~~~dfi~q~k~egr--~viFSSH~m~EvealCDr 202 (245)
T COG4555 167 RTRRKFHDFIKQLKNEGR--AVIFSSHIMQEVEALCDR 202 (245)
T ss_pred HHHHHHHHHHHHhhcCCc--EEEEecccHHHHHHhhhe
Confidence 345677889999999998 588999998888888764
No 244
>TIGR03551 F420_cofH 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, CofH subunit. This enzyme, together with CofG, complete the biosynthesis of 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, the chromophore of coenzyme F420. The chromophore is also used in cyanobacteria DNA photolyases.
Probab=25.42 E-value=3.4e+02 Score=24.99 Aligned_cols=70 Identities=13% Similarity=0.192 Sum_probs=39.6
Q ss_pred CCHHHHHHHHHHHHhcCCeeeEeecC-----CChhhHHHHHHhcCC-CCccccccc-----------CcccchHHHHHHH
Q 021264 134 LDIPSTWRAMEALYDSGKARAIGVCN-----FSTKKLGDLLEIARV-PPAVNQVEC-----------HSSWQQQKLHAFC 196 (315)
Q Consensus 134 ~~~~~~~~~L~~lk~~GkIr~iGvS~-----~~~~~l~~~~~~~~~-~~~~~q~~~-----------n~~~~~~~~~~~~ 196 (315)
.+.+++.+.++.+++.| ++.|.+.. ...+.+.++++.... .+.+ ++.. +.-....+.++..
T Consensus 70 ls~eeI~e~~~~~~~~G-~~~i~l~gG~~p~~~~~~~~~i~~~Ik~~~~~i-~~~~~t~~ei~~~~~~~g~~~~e~l~~L 147 (343)
T TIGR03551 70 LSLEEIAERAAEAWKAG-ATEVCIQGGIHPDLDGDFYLDILRAVKEEVPGM-HIHAFSPMEVYYGARNSGLSVEEALKRL 147 (343)
T ss_pred CCHHHHHHHHHHHHHCC-CCEEEEEeCCCCCCCHHHHHHHHHHHHHHCCCc-eEEecCHHHHHHHHHHcCCCHHHHHHHH
Confidence 57889999999999987 55666652 233333344333211 0111 1110 1112236788889
Q ss_pred HHcCceEEE
Q 021264 197 KSKGVHLSG 205 (315)
Q Consensus 197 ~~~gi~v~~ 205 (315)
++.|+.-+.
T Consensus 148 keAGl~~i~ 156 (343)
T TIGR03551 148 KEAGLDSMP 156 (343)
T ss_pred HHhCccccc
Confidence 998887653
No 245
>PRK13753 dihydropteroate synthase; Provisional
Probab=25.38 E-value=5e+02 Score=23.37 Aligned_cols=65 Identities=14% Similarity=0.077 Sum_probs=45.9
Q ss_pred HHHHHHHHHhcCCeeeEeecCCChhhHHHHHHhcCCCCcccccccCcccchHHHHHHHHHcCceEEEecCCC
Q 021264 139 TWRAMEALYDSGKARAIGVCNFSTKKLGDLLEIARVPPAVNQVECHSSWQQQKLHAFCKSKGVHLSGYSPLG 210 (315)
Q Consensus 139 ~~~~L~~lk~~GkIr~iGvS~~~~~~l~~~~~~~~~~~~~~q~~~n~~~~~~~~~~~~~~~gi~v~~~~pl~ 210 (315)
+...++.+++.+. -|.|-++.++.++++++.. .. .++ ..+-+ ..+.+.+.+.+.+++++.+-..+
T Consensus 65 v~pvI~~l~~~~~--~ISIDT~~~~va~~al~aG-ad-iIN--DVsg~-~d~~~~~vva~~~~~vVlmH~~~ 129 (279)
T PRK13753 65 IAPLLDALSDQMH--RVSIDSFQPETQRYALKRG-VG-YLN--DIQGF-PDPALYPDIAEADCRLVVMHSAQ 129 (279)
T ss_pred HHHHHHHHHhCCC--cEEEECCCHHHHHHHHHcC-CC-EEE--eCCCC-CchHHHHHHHHcCCCEEEEecCC
Confidence 3467888887753 4899999999999999853 21 122 22333 25678889999999998876653
No 246
>KOG0258 consensus Alanine aminotransferase [Amino acid transport and metabolism]
Probab=25.33 E-value=6.1e+02 Score=24.29 Aligned_cols=200 Identities=18% Similarity=0.179 Sum_probs=105.1
Q ss_pred CcCCcchHHHHHHHHHHhCCc-----EEecCCCCC---CHHHHHHHHHHhhhcCCcCCCCeE-EeeccCCCC-CCCCcHH
Q 021264 24 WQADPGIVGNAVDVAIKAGYR-----HIDCARLYL---NEKEIGFVLKKLFEDGVVKREDLW-ITSKLWCTD-LAPKDVP 93 (315)
Q Consensus 24 ~~~~~~~~~~~l~~A~~~Gi~-----~~DtA~~Yg---se~~lG~~l~~~~~~~~~~R~~~~-i~tK~~~~~-~~~~~i~ 93 (315)
|..+.++..+.++.|. .||+ ++.-..--| ||+.+-..++-. ..+.++ ++--++..+ +..+.=-
T Consensus 196 W~ld~~el~~~~~eA~-k~i~~r~lvvINPGNPTGqvls~e~ie~i~~fa------~~~~l~llaDEVYQ~Nvy~~~skF 268 (475)
T KOG0258|consen 196 WSLDVAELERSVDEAR-KGINPRALVVINPGNPTGQVLSEENIEGIICFA------AEEGLVLLADEVYQDNVYTTGSKF 268 (475)
T ss_pred CCCCHHHHHHHHHHHh-ccCCceEEEEECCCCccchhhcHHHHHHHHHHH------HHcCeEEechHHHHhhccCCCcch
Confidence 6788899999999999 8887 233333334 677777777654 233344 444443221 2233345
Q ss_pred HHHHHHHHhcCCCccce---EeeecCCCccCCCCCCCCCCCCCCCHHHHHHHHHHHH-hcCCeeeEeecCCChh---hHH
Q 021264 94 EALDNTLQDLQIDYVDL---YLIHWPARMKKGSVGFNPENLLPLDIPSTWRAMEALY-DSGKARAIGVCNFSTK---KLG 166 (315)
Q Consensus 94 ~~ve~sL~~Lg~d~iDl---~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~L~~lk-~~GkIr~iGvS~~~~~---~l~ 166 (315)
.++++-|..||-.|-|- .-+|.....-.+ ++- .-| +.=+.|++++ ++.
T Consensus 269 hSfKKvl~emg~~~~~~v~L~SfhSvSKGy~g----------------------ECG~RGG---YmEv~n~~prv~~qi~ 323 (475)
T KOG0258|consen 269 HSFKKVLHEMGNPYPDNVSLASFHSVSKGYMG----------------------ECGQRGG---YMESLNRDPRVKQQIK 323 (475)
T ss_pred HhHHHHHHHhcCccCCceEEEeeeccccccee----------------------eecccCC---eeecccCChhHHHHHH
Confidence 78899999999666544 444543221111 111 112 3334445544 334
Q ss_pred HHHHhcCCCCcccccccCccc--------------ch-HHHHHHHHHc----------CceEEEecCCCCCCCCCCcccc
Q 021264 167 DLLEIARVPPAVNQVECHSSW--------------QQ-QKLHAFCKSK----------GVHLSGYSPLGSPGTRWIKSDV 221 (315)
Q Consensus 167 ~~~~~~~~~~~~~q~~~n~~~--------------~~-~~~~~~~~~~----------gi~v~~~~pl~~gg~~~~~~~~ 221 (315)
++......+++.-|.-..... .+ +.++...+++ =-++.+..|-+. ..++ +.+
T Consensus 324 Kl~si~lc~~V~GQ~~vdl~VnPP~Pgd~Sy~~~~~Ekd~il~~l~~ra~l~~~~~ns~~gi~cn~~qGA-MY~f--P~i 400 (475)
T KOG0258|consen 324 KLASIKLCPQVSGQKLVDLVVNPPKPGDPSYDLFSSEKDGILSSLRSRAKLTEDAFNSLEGISCNPVQGA-MYLF--PQI 400 (475)
T ss_pred HHHhhhhcCCccchhhhceecCCCCCCCcchhhhhhhhHhHHHHHHHHhHHHHHHHhhcCceeeccCccc-eeec--ccc
Confidence 443333333343343332221 11 2233322222 234445444422 2222 234
Q ss_pred CCchHHHHHHHHhCCCHHH-HHHHHHhhcCCeeecCCC
Q 021264 222 LRHPVLKTAAEKLGKTPAQ-VALRWGLQMGHSVLPKST 258 (315)
Q Consensus 222 ~~~~~l~~la~~~~~s~aq-~al~~~l~~~~~~i~G~~ 258 (315)
.-.++..+-|+.+++.|-. -|++-+-..|++++||+.
T Consensus 401 ~lP~kaie~A~~~~~~PD~FYc~~LLe~tGIcvVPGSG 438 (475)
T KOG0258|consen 401 SLPPKAIEAAKALGIAPDEFYCLKLLEATGICVVPGSG 438 (475)
T ss_pred cCCHHHHHHHHHhCCCCcHHHHHHHHHhcCeEEecCCC
Confidence 4456777788889998866 566666677899999874
No 247
>COG0135 TrpF Phosphoribosylanthranilate isomerase [Amino acid transport and metabolism]
Probab=25.29 E-value=1.2e+02 Score=26.14 Aligned_cols=48 Identities=17% Similarity=0.179 Sum_probs=30.3
Q ss_pred HHHHHHHHhcCCCccceEeeecCCCccCCCCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeeEeecCCCh
Q 021264 94 EALDNTLQDLQIDYVDLYLIHWPARMKKGSVGFNPENLLPLDIPSTWRAMEALYDSGKARAIGVCNFST 162 (315)
Q Consensus 94 ~~ve~sL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~L~~lk~~GkIr~iGvS~~~~ 162 (315)
..+.+.++.++ +|++|||.... .+.++.|.+...-..++++.++.-..
T Consensus 65 ~~i~~i~~~~~---ld~VQlHG~e~------------------~~~~~~l~~~~~~~v~kai~v~~~~~ 112 (208)
T COG0135 65 EEILEIAEELG---LDAVQLHGDED------------------PEYIDQLKEELGVPVIKAISVSEEGD 112 (208)
T ss_pred HHHHHHHHhcC---CCEEEECCCCC------------------HHHHHHHHhhcCCceEEEEEeCCccc
Confidence 45556666665 89999997533 23344444433346899999887543
No 248
>COG5310 Homospermidine synthase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=25.23 E-value=5.7e+02 Score=23.89 Aligned_cols=150 Identities=15% Similarity=0.087 Sum_probs=76.5
Q ss_pred HHHHHHHHhCCcEEecCCCCCC-HHHHHHHHHHhhhcCCcCCCCeEEeeccCCCCCCCCcHHHHHHHHHHhcCCCccceE
Q 021264 33 NAVDVAIKAGYRHIDCARLYLN-EKEIGFVLKKLFEDGVVKREDLWITSKLWCTDLAPKDVPEALDNTLQDLQIDYVDLY 111 (315)
Q Consensus 33 ~~l~~A~~~Gi~~~DtA~~Ygs-e~~lG~~l~~~~~~~~~~R~~~~i~tK~~~~~~~~~~i~~~ve~sL~~Lg~d~iDl~ 111 (315)
+..+..-+.||+|+-.+-.-.+ ..+|+..++. + .-+.+.|---+ +.+ --.+-+-++++++=|||-+
T Consensus 51 k~~k~~~~~girfV~e~it~~Nyk~vL~pll~~----~--~gqgf~vnLSv---d~~----s~Dlmr~crk~~vLYidTv 117 (481)
T COG5310 51 KDRKILDERGIRFVQEAITRDNYKDVLKPLLKG----V--GGQGFCVNLSV---DTS----SLDLMRLCRKHGVLYIDTV 117 (481)
T ss_pred HHHHHHHhhhhHHHHHhcChhhHHHHHHHHhhc----C--CCceEEEEeEe---ccc----hhHHHHHHHHcCeEEEeee
Confidence 5566667889998876543222 3444444444 2 34555554444 222 2456778899999999998
Q ss_pred eeecCCCccCCCCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeeEe----ecCC--ChhhHHH-----HHHhcCCCCcccc
Q 021264 112 LIHWPARMKKGSVGFNPENLLPLDIPSTWRAMEALYDSGKARAIG----VCNF--STKKLGD-----LLEIARVPPAVNQ 180 (315)
Q Consensus 112 ~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~L~~lk~~GkIr~iG----vS~~--~~~~l~~-----~~~~~~~~~~~~q 180 (315)
.=-|+....+... ....+.=-+|++.+-.-|-|..| ||++ ++.-+.- +++++.- ...-
T Consensus 118 VEpW~gfyfDa~a---------dn~artnyaLRet~lrEk~r~pgg~TaVs~cGANPGmvswFVKqaLvdlAad--~~ld 186 (481)
T COG5310 118 VEPWLGFYFDAQA---------DNAARTNYALRETVLREKRRNPGGPTAVSTCGANPGMVSWFVKQALVDLAAD--LGLD 186 (481)
T ss_pred eccccccchhhhh---------hhhhhhhHHHHHHHHHHhccCCCCCeeeeecCCCchHHHHHHHHHHHHHHHH--hCcC
Confidence 7667654432211 22233333455555444444333 3433 4432222 2222210 0001
Q ss_pred cccCcccchHHHHHHHHHcCceEEEe
Q 021264 181 VECHSSWQQQKLHAFCKSKGVHLSGY 206 (315)
Q Consensus 181 ~~~n~~~~~~~~~~~~~~~gi~v~~~ 206 (315)
+....-+-+......+++.||..|..
T Consensus 187 ~~ep~~ddr~gwAkLmkK~GVkgiHi 212 (481)
T COG5310 187 FEEPAQDDREGWAKLMKKAGVKGIHI 212 (481)
T ss_pred ccCCcchhhHHHHHHHHHcCCceEEE
Confidence 11111222256778888888877763
No 249
>TIGR00423 radical SAM domain protein, CofH subfamily. This protein family includes the CofH protein of coenzyme F(420) biosynthesis from Methanocaldococcus jannaschii, but appears to hit genomes more broadly than just the subset that make coenzyme F(420), so that narrower group is being built as a separate family.
Probab=25.19 E-value=5.1e+02 Score=23.37 Aligned_cols=86 Identities=15% Similarity=0.076 Sum_probs=42.5
Q ss_pred CCCCcHHHHHHHHHHhcCCCccceEeeecCCCccCCCCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeeEeecCCChhhHH
Q 021264 87 LAPKDVPEALDNTLQDLQIDYVDLYLIHWPARMKKGSVGFNPENLLPLDIPSTWRAMEALYDSGKARAIGVCNFSTKKLG 166 (315)
Q Consensus 87 ~~~~~i~~~ve~sL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~L~~lk~~GkIr~iGvS~~~~~~l~ 166 (315)
.+++.+.+.++... ..|...|-+.-=+.|+ .+.+.+.+.++.+++.+. .+.++.+++..+.
T Consensus 36 ls~eeI~~~~~~~~-~~G~~~i~l~gg~~~~----------------~~~~~~~~i~~~Ik~~~~--~i~~~~~s~~e~~ 96 (309)
T TIGR00423 36 LSLEEILEKVKEAV-AKGATEVCIQGGLNPQ----------------LDIEYYEELFRAIKQEFP--DVHIHAFSPMEVY 96 (309)
T ss_pred CCHHHHHHHHHHHH-HCCCCEEEEecCCCCC----------------CCHHHHHHHHHHHHHHCC--CceEEecCHHHHH
Confidence 34555666665443 3466555554211111 234455666777776653 3444444444433
Q ss_pred HHHHhcCCCCcccccccCcccchHHHHHHHHHcCceEE
Q 021264 167 DLLEIARVPPAVNQVECHSSWQQQKLHAFCKSKGVHLS 204 (315)
Q Consensus 167 ~~~~~~~~~~~~~q~~~n~~~~~~~~~~~~~~~gi~v~ 204 (315)
.+....+. ...+.++..++.|+.-+
T Consensus 97 ~~~~~~g~-------------~~~e~l~~LkeAGl~~i 121 (309)
T TIGR00423 97 FLAKNEGL-------------SIEEVLKRLKKAGLDSM 121 (309)
T ss_pred HHHHHcCC-------------CHHHHHHHHHHcCCCcC
Confidence 33222221 12467777777776644
No 250
>cd00408 DHDPS-like Dihydrodipicolinate synthase family. A member of the class I aldolases, which use an active-site lysine which stablilzes a reaction intermediate via Schiff base formation, and have TIM beta/alpha barrel fold. The dihydrodipicolinate synthase family comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways and includes such proteins as N-acetylneuraminate lyase, MosA protein, 5-keto-4-deoxy-glucarate dehydratase, trans-o-hydroxybenzylidenepyruvate hydratase-aldolase, trans-2'-carboxybenzalpyruvate hydratase-aldolase, and 2-keto-3-deoxy- gluconate aldolase. The family is also referred to as the N-acetylneuraminate lyase (NAL) family.
Probab=25.15 E-value=4.8e+02 Score=23.01 Aligned_cols=97 Identities=15% Similarity=0.113 Sum_probs=58.4
Q ss_pred cCCcchHHHHHHHHHHhCCcEEecCCCCC-----C----HHHHHHHHHHhhhcCCcCCCCeEEeeccCCCCCCCCcHHHH
Q 021264 25 QADPGIVGNAVDVAIKAGYRHIDCARLYL-----N----EKEIGFVLKKLFEDGVVKREDLWITSKLWCTDLAPKDVPEA 95 (315)
Q Consensus 25 ~~~~~~~~~~l~~A~~~Gi~~~DtA~~Yg-----s----e~~lG~~l~~~~~~~~~~R~~~~i~tK~~~~~~~~~~i~~~ 95 (315)
..+.+...+.++..++.|++-+-.....| + .+++..+.+.. ..++-|..-++. ...+++
T Consensus 14 ~iD~~~~~~~i~~l~~~Gv~gi~~~GstGE~~~ls~~Er~~l~~~~~~~~-------~~~~~vi~gv~~-----~~~~~~ 81 (281)
T cd00408 14 EVDLDALRRLVEFLIEAGVDGLVVLGTTGEAPTLTDEERKEVIEAVVEAV-------AGRVPVIAGVGA-----NSTREA 81 (281)
T ss_pred CcCHHHHHHHHHHHHHcCCCEEEECCCCcccccCCHHHHHHHHHHHHHHh-------CCCCeEEEecCC-----ccHHHH
Confidence 46778889999999999999887766665 2 23333344332 233434444422 123444
Q ss_pred HHHH--HHhcCCCccceEeeecCCCccCCCCCCCCCCCCCCCHHHHHHHHHHHHhc
Q 021264 96 LDNT--LQDLQIDYVDLYLIHWPARMKKGSVGFNPENLLPLDIPSTWRAMEALYDS 149 (315)
Q Consensus 96 ve~s--L~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~L~~lk~~ 149 (315)
++.. .+.+| +|-+++..|.... ...+++++.+.++.+.
T Consensus 82 i~~a~~a~~~G---ad~v~v~pP~y~~-------------~~~~~~~~~~~~ia~~ 121 (281)
T cd00408 82 IELARHAEEAG---ADGVLVVPPYYNK-------------PSQEGIVAHFKAVADA 121 (281)
T ss_pred HHHHHHHHHcC---CCEEEECCCcCCC-------------CCHHHHHHHHHHHHhc
Confidence 4433 35555 6777777766532 3456777777777775
No 251
>COG3653 N-acyl-D-aspartate/D-glutamate deacylase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=25.15 E-value=6.4e+02 Score=24.49 Aligned_cols=80 Identities=11% Similarity=-0.015 Sum_probs=47.6
Q ss_pred HHHHHHHHHHhCCcEEe--------cCCCCC-------CHHHHHHHHHHhhhcCCcCCCCeEEeeccCCCCCCCCcHHHH
Q 021264 31 VGNAVDVAIKAGYRHID--------CARLYL-------NEKEIGFVLKKLFEDGVVKREDLWITSKLWCTDLAPKDVPEA 95 (315)
Q Consensus 31 ~~~~l~~A~~~Gi~~~D--------tA~~Yg-------se~~lG~~l~~~~~~~~~~R~~~~i~tK~~~~~~~~~~i~~~ 95 (315)
-.++++.|+|+|---+- |+..|. .++..+.++.-.- .+..+.-+|.. .-....+.+.
T Consensus 184 MaallreAlEaGalGmS~~~~~~~~tgd~~p~~~l~~~t~el~~la~~va~-----ag~~iLqst~d---~~egaa~L~~ 255 (579)
T COG3653 184 MAALLREALEAGALGMSMDAAIDKLTGDRYPSRALPFATWELRRLAISVAR-----AGGRILQSTHD---RDEGAAALEA 255 (579)
T ss_pred HHHHHHHHHhccccccchhhhcccccccccCCcccCcchHHHHHHHHHHHH-----hcCceeEeecc---ccchHHHHHH
Confidence 45689999999876666 666665 2556666654321 24444444443 1123445666
Q ss_pred HHHHHHhcC-CCccceEeeecCCC
Q 021264 96 LDNTLQDLQ-IDYVDLYLIHWPAR 118 (315)
Q Consensus 96 ve~sL~~Lg-~d~iDl~~lH~p~~ 118 (315)
++++.+.-+ -..+-+.+.|.-..
T Consensus 256 l~~a~ri~~R~~~vr~v~s~~a~a 279 (579)
T COG3653 256 LLEASRIGNRRKGVRMVMSHSADA 279 (579)
T ss_pred HHHHHHhcCcccCceEEEeccccc
Confidence 666666663 34577888886443
No 252
>TIGR00314 cdhA CO dehydrogenase/acetyl-CoA synthase complex, epsilon subunit. Acetyl-CoA decarbonylase/synthase (ACDS) is a multienzyme complex. Carbon monoxide dehydrogenase is a synonym. The ACDS complex carries out an unusual reaction involving the reversible cleavage and synthesis of acetyl-CoA in methanogens. The model contains the prosite signature for 4Fe-4S ferredoxins [C-x(2)-C-x(2)-C-x(3)-C-[PEG]] between residues 448-462 of the model.
Probab=25.10 E-value=3.7e+02 Score=28.07 Aligned_cols=75 Identities=16% Similarity=0.127 Sum_probs=45.5
Q ss_pred CHHHHHHHHH--HHHhcCCeeeEeecCCChhhHHHH--------------HHhcCCCCcccccccCcccchHHHHHHHHH
Q 021264 135 DIPSTWRAME--ALYDSGKARAIGVCNFSTKKLGDL--------------LEIARVPPAVNQVECHSSWQQQKLHAFCKS 198 (315)
Q Consensus 135 ~~~~~~~~L~--~lk~~GkIr~iGvS~~~~~~l~~~--------------~~~~~~~~~~~q~~~n~~~~~~~~~~~~~~ 198 (315)
....+.++++ +|.++ |.-+|++-...+.+ +. .-....-++++-+.++=.. ..+.+.|+.
T Consensus 245 l~~~iv~~~~~~~l~~~--I~l~GiCCTg~e~~-R~~~gv~~~Gn~~~qe~~i~TGavD~~VvD~QCi~--p~l~~~a~c 319 (784)
T TIGR00314 245 PGRPIADYLEENGMEDE--VELCGICCTAIDMT-RYNAKAKIVGPLSRQLRVIRAGVADVIIVDEQCIR--ADILEECKK 319 (784)
T ss_pred HHHHHHHHHhChhHHHH--hceeeeeccccHHh-hhccCCcccCcHHHHHHHHHcCCCcEEEEecccCc--ccHHHHHHh
Confidence 3456677777 55555 77788877665533 22 0011122333333332222 578999999
Q ss_pred cCceEEEecCCCCCCC
Q 021264 199 KGVHLSGYSPLGSPGT 214 (315)
Q Consensus 199 ~gi~v~~~~pl~~gg~ 214 (315)
.+..+|+-++.+.-||
T Consensus 320 ~~tklItTs~ka~~gl 335 (784)
T TIGR00314 320 MGIPLIATNDKACLGL 335 (784)
T ss_pred cCCeEEEcchHHhcCC
Confidence 9999999999977665
No 253
>TIGR03586 PseI pseudaminic acid synthase.
Probab=25.04 E-value=5.5e+02 Score=23.69 Aligned_cols=134 Identities=10% Similarity=0.075 Sum_probs=70.2
Q ss_pred CCcchHHHHHHHHHHhCCcEEecCCCCCCHHHH-----------------HHHHHHhhhcCCcCCCCeEEeeccCCCCCC
Q 021264 26 ADPGIVGNAVDVAIKAGYRHIDCARLYLNEKEI-----------------GFVLKKLFEDGVVKREDLWITSKLWCTDLA 88 (315)
Q Consensus 26 ~~~~~~~~~l~~A~~~Gi~~~DtA~~Ygse~~l-----------------G~~l~~~~~~~~~~R~~~~i~tK~~~~~~~ 88 (315)
.+.++-..+.+.+-+.|+.++=|.-.-.+-..+ -..|+..- + ....++++|=. .+
T Consensus 74 l~~e~~~~L~~~~~~~Gi~~~stpfd~~svd~l~~~~v~~~KI~S~~~~n~~LL~~va-~---~gkPvilstG~----~t 145 (327)
T TIGR03586 74 TPWEWHKELFERAKELGLTIFSSPFDETAVDFLESLDVPAYKIASFEITDLPLIRYVA-K---TGKPIIMSTGI----AT 145 (327)
T ss_pred CCHHHHHHHHHHHHHhCCcEEEccCCHHHHHHHHHcCCCEEEECCccccCHHHHHHHH-h---cCCcEEEECCC----CC
Confidence 566667788888999999988664321110000 01122221 0 23456665544 24
Q ss_pred CCcHHHHHHHHHHhcCCCccceEeeecCCCccCCCCCCCCCCCCCCCHH-HHHHHHHHHHhcCCeeeEeecCCChhhHHH
Q 021264 89 PKDVPEALDNTLQDLQIDYVDLYLIHWPARMKKGSVGFNPENLLPLDIP-STWRAMEALYDSGKARAIGVCNFSTKKLGD 167 (315)
Q Consensus 89 ~~~i~~~ve~sL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~-~~~~~L~~lk~~GkIr~iGvS~~~~~~l~~ 167 (315)
.+.+..+++...+ -|. -|+.++|....+. .+.. --+.++..|++.-. .-||+|.|+.....-
T Consensus 146 ~~Ei~~Av~~i~~-~g~--~~i~LlhC~s~YP-------------~~~~~~nL~~i~~lk~~f~-~pVG~SDHt~G~~~~ 208 (327)
T TIGR03586 146 LEEIQEAVEACRE-AGC--KDLVLLKCTSSYP-------------APLEDANLRTIPDLAERFN-VPVGLSDHTLGILAP 208 (327)
T ss_pred HHHHHHHHHHHHH-CCC--CcEEEEecCCCCC-------------CCcccCCHHHHHHHHHHhC-CCEEeeCCCCchHHH
Confidence 4455555555432 232 4799999765431 1111 12566666666443 369999998765433
Q ss_pred HHHhcCCCCcccccccCc
Q 021264 168 LLEIARVPPAVNQVECHS 185 (315)
Q Consensus 168 ~~~~~~~~~~~~q~~~n~ 185 (315)
+...+-. -+++..++++
T Consensus 209 ~aAva~G-A~iIEkH~tl 225 (327)
T TIGR03586 209 VAAVALG-ACVIEKHFTL 225 (327)
T ss_pred HHHHHcC-CCEEEeCCCh
Confidence 3333211 1355555543
No 254
>PRK09282 pyruvate carboxylase subunit B; Validated
Probab=24.78 E-value=5.1e+02 Score=26.09 Aligned_cols=120 Identities=12% Similarity=0.117 Sum_probs=0.0
Q ss_pred HHHHHHHHHhcCCCccceE---eeecCCCccCCCCCCCCCCCCCCCHHHHHHHHHHHHhc-CCee---------eEeecC
Q 021264 93 PEALDNTLQDLQIDYVDLY---LIHWPARMKKGSVGFNPENLLPLDIPSTWRAMEALYDS-GKAR---------AIGVCN 159 (315)
Q Consensus 93 ~~~ve~sL~~Lg~d~iDl~---~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~L~~lk~~-GkIr---------~iGvS~ 159 (315)
+..+-..|.+.|++.|+++ .++..-+ ...++-|+.|+++++. ..++ .+|.++
T Consensus 28 ~l~ia~~l~~~G~~~iE~~ggatfd~~~r---------------fl~edp~e~l~~l~~~~~~~~l~~l~Rg~N~~gy~~ 92 (592)
T PRK09282 28 MLPIAEKLDKVGFWSLEVWGGATFDVCIR---------------YLNEDPWERLRKLKKALPNTPLQMLLRGQNLVGYRH 92 (592)
T ss_pred HHHHHHHHHHcCCCEEEecCCccchhhcc---------------cCCccHHHHHHHHHHhCCCCEEEEEecccccccccc
Q ss_pred CChhhHHHHHHhc---CCCCcccccccCcccchHHHHHHHHHcCceEEEecCCCCCCCCCCccccCCchHHHHHHHHh
Q 021264 160 FSTKKLGDLLEIA---RVPPAVNQVECHSSWQQQKLHAFCKSKGVHLSGYSPLGSPGTRWIKSDVLRHPVLKTAAEKL 234 (315)
Q Consensus 160 ~~~~~l~~~~~~~---~~~~~~~q~~~n~~~~~~~~~~~~~~~gi~v~~~~pl~~gg~~~~~~~~~~~~~l~~la~~~ 234 (315)
+..+.+++.++.+ +++..-+-...|....-...+++++++|..+.+.-.+..+ +....+.+.+++++.
T Consensus 93 ypd~vv~~~v~~A~~~Gvd~irif~~lnd~~n~~~~i~~ak~~G~~v~~~i~~t~~-------p~~t~~~~~~~a~~l 163 (592)
T PRK09282 93 YPDDVVEKFVEKAAENGIDIFRIFDALNDVRNMEVAIKAAKKAGAHVQGTISYTTS-------PVHTIEKYVELAKEL 163 (592)
T ss_pred ccchhhHHHHHHHHHCCCCEEEEEEecChHHHHHHHHHHHHHcCCEEEEEEEeccC-------CCCCHHHHHHHHHHH
No 255
>TIGR00221 nagA N-acetylglucosamine-6-phosphate deacetylase.
Probab=24.61 E-value=5.9e+02 Score=23.92 Aligned_cols=35 Identities=14% Similarity=0.172 Sum_probs=30.5
Q ss_pred HHHHHHHHHHhcCCeeeEeecCCChhhHHHHHHhc
Q 021264 138 STWRAMEALYDSGKARAIGVCNFSTKKLGDLLEIA 172 (315)
Q Consensus 138 ~~~~~L~~lk~~GkIr~iGvS~~~~~~l~~~~~~~ 172 (315)
...+.++.|+++|.+-++|=|+-+.+++.++.+..
T Consensus 178 ~~~~~i~~l~~~gi~vs~GHs~A~~~~~~~a~~~G 212 (380)
T TIGR00221 178 QHFELIRHLKDAGIIVSAGHTNATYELAKAAFKAG 212 (380)
T ss_pred ChHHHHHHHHHCCeEEEeeCCCCCHHHHHHHHHcC
Confidence 45788999999999999999999999998887754
No 256
>cd02930 DCR_FMN 2,4-dienoyl-CoA reductase (DCR) FMN-binding domain. DCR in E. coli is an iron-sulfur flavoenzyme which contains FMN, FAD, and a 4Fe-4S cluster. It is also a monomer, unlike that of its eukaryotic counterparts which form homotetramers and lack the flavin and iron-sulfur cofactors. Metabolism of unsaturated fatty acids requires auxiliary enzymes in addition to those used in b-oxidation. After a given number of cycles through the b-oxidation pathway, those unsaturated fatty acyl-CoAs with double bonds at even-numbered carbon positions contain 2-trans, 4-cis double bonds that can not be modified by enoyl-CoA hydratase. DCR utilizes NADPH to remove the C4-C5 double bond. DCR can catalyze the reduction of both natural fatty acids with cis double bonds, as well as substrates containing trans double bonds. The reaction is initiated by hybrid transfer from NADPH to FAD, which in turn transfers electrons, one at a time, to FMN via the 4Fe-4S cluster. The fully reduced FMN provi
Probab=24.54 E-value=5.7e+02 Score=23.65 Aligned_cols=91 Identities=18% Similarity=0.037 Sum_probs=46.6
Q ss_pred CCCeEEeeccCCCCCCC--CcHH--HHHHHHHHhcCCCccceE-eeec-CCCccCCCCCCCCCCCCCCCHHHHHHHHHHH
Q 021264 73 REDLWITSKLWCTDLAP--KDVP--EALDNTLQDLQIDYVDLY-LIHW-PARMKKGSVGFNPENLLPLDIPSTWRAMEAL 146 (315)
Q Consensus 73 R~~~~i~tK~~~~~~~~--~~i~--~~ve~sL~~Lg~d~iDl~-~lH~-p~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l 146 (315)
.+++.|..|++..+... .... ..+-+.|+..|+|+|++- -.|. +...... . .......+..+++
T Consensus 202 G~d~~v~iRi~~~D~~~~g~~~~e~~~i~~~Le~~G~d~i~vs~g~~e~~~~~~~~-------~---~~~~~~~~~~~~i 271 (353)
T cd02930 202 GEDFIIIYRLSMLDLVEGGSTWEEVVALAKALEAAGADILNTGIGWHEARVPTIAT-------S---VPRGAFAWATAKL 271 (353)
T ss_pred CCCceEEEEecccccCCCCCCHHHHHHHHHHHHHcCCCEEEeCCCcCCCCCccccc-------c---CCchhhHHHHHHH
Confidence 35677888886544221 1222 244466777887777762 2232 1110000 0 1111123445666
Q ss_pred HhcCCeeeEeecC-CChhhHHHHHHhcC
Q 021264 147 YDSGKARAIGVCN-FSTKKLGDLLEIAR 173 (315)
Q Consensus 147 k~~GkIr~iGvS~-~~~~~l~~~~~~~~ 173 (315)
++.=.|-=++... ++++.++++++...
T Consensus 272 k~~v~iPVi~~G~i~~~~~a~~~i~~g~ 299 (353)
T cd02930 272 KRAVDIPVIASNRINTPEVAERLLADGD 299 (353)
T ss_pred HHhCCCCEEEcCCCCCHHHHHHHHHCCC
Confidence 6665666566655 46777888877544
No 257
>PRK04390 rnpA ribonuclease P; Reviewed
Probab=24.52 E-value=2.8e+02 Score=21.33 Aligned_cols=64 Identities=11% Similarity=-0.032 Sum_probs=42.1
Q ss_pred CCCCeEEeeccCCCCCCCCcHHHHHHHHHHhcCC--CccceEeeecCCCccCCCCCCCCCCCCCCCHHHHHHHHHHHHh
Q 021264 72 KREDLWITSKLWCTDLAPKDVPEALDNTLQDLQI--DYVDLYLIHWPARMKKGSVGFNPENLLPLDIPSTWRAMEALYD 148 (315)
Q Consensus 72 ~R~~~~i~tK~~~~~~~~~~i~~~ve~sL~~Lg~--d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~L~~lk~ 148 (315)
+|=.+.|+-|++..--....+++.+.++++.... ...|++++..+.... .+..++.+.|..|.+
T Consensus 44 ~R~G~~VsKK~~~~AV~RNRiKR~lRE~~R~~~~~l~~~DiVvi~r~~~~~-------------~~~~~l~~~l~~ll~ 109 (120)
T PRK04390 44 PRLGLVVGKKTAKRAVERNYMKRVIREWFRLNQHRLPPVDFVVRVQRKFDR-------------ATAKQAVAELAQLMA 109 (120)
T ss_pred ceEEEEEecccCcchhhhhHHHHHHHHHHHhccccCCCceEEEEeCCCccc-------------CCHHHHHHHHHHHHH
Confidence 4556777777544345567788888888876542 357999998876432 456666666666644
No 258
>TIGR03822 AblA_like_2 lysine-2,3-aminomutase-related protein. Members of this protein form a distinctive clade, homologous to lysine-2,3-aminomutase (of Bacillus, Clostridium, and methanogenic archaea) and likely similar in function. Members of this family are found in Rhodopseudomonas, Caulobacter crescentus, Bradyrhizobium, etc.
Probab=24.51 E-value=5.5e+02 Score=23.46 Aligned_cols=75 Identities=9% Similarity=-0.006 Sum_probs=45.8
Q ss_pred HHHHHHHHHHHHhcCCeeeEeecC---------CChhhHHHHHHhcCCCCcccccccCccc---c-hHHHHHHHHHcCce
Q 021264 136 IPSTWRAMEALYDSGKARAIGVCN---------FSTKKLGDLLEIARVPPAVNQVECHSSW---Q-QQKLHAFCKSKGVH 202 (315)
Q Consensus 136 ~~~~~~~L~~lk~~GkIr~iGvS~---------~~~~~l~~~~~~~~~~~~~~q~~~n~~~---~-~~~~~~~~~~~gi~ 202 (315)
...+.+.++.+++-|.++.+.+.+ .+.+.++.+.+. +. ...+-++.|... . ..+.++.+++.|+.
T Consensus 152 ~~~L~~ll~~l~~i~~v~~iri~Tr~~v~~p~rit~ell~~L~~~-g~-~v~i~l~~~h~~el~~~~~~ai~~L~~~Gi~ 229 (321)
T TIGR03822 152 PRRLGDIMARLAAIDHVKIVRFHTRVPVADPARVTPALIAALKTS-GK-TVYVALHANHARELTAEARAACARLIDAGIP 229 (321)
T ss_pred HHHHHHHHHHHHhCCCccEEEEeCCCcccChhhcCHHHHHHHHHc-CC-cEEEEecCCChhhcCHHHHHHHHHHHHcCCE
Confidence 456788888888888776555544 233334444343 22 233444443211 1 14578888899999
Q ss_pred EEEecCCCCC
Q 021264 203 LSGYSPLGSP 212 (315)
Q Consensus 203 v~~~~pl~~g 212 (315)
+....++..|
T Consensus 230 v~~q~vLl~g 239 (321)
T TIGR03822 230 MVSQSVLLRG 239 (321)
T ss_pred EEEEeeEeCC
Confidence 9999999774
No 259
>PRK01060 endonuclease IV; Provisional
Probab=24.44 E-value=3.2e+02 Score=23.98 Aligned_cols=21 Identities=5% Similarity=0.075 Sum_probs=14.7
Q ss_pred HHHHHHhcCCCccceEeeecCC
Q 021264 96 LDNTLQDLQIDYVDLYLIHWPA 117 (315)
Q Consensus 96 ve~sL~~Lg~d~iDl~~lH~p~ 117 (315)
.-+.++++|.+.++|+ ++.|.
T Consensus 17 ~l~~~~~~G~d~vEl~-~~~p~ 37 (281)
T PRK01060 17 AVAEAAEIGANAFMIF-TGNPQ 37 (281)
T ss_pred HHHHHHHcCCCEEEEE-CCCCC
Confidence 4467788899999986 34443
No 260
>PF09012 FeoC: FeoC like transcriptional regulator; InterPro: IPR015102 This entry contains several transcriptional regulators, including FeoC, which contain a HTH motif. FeoC acts as a [Fe-S] dependent transcriptional repressor []. ; PDB: 1XN7_A 2K02_A.
Probab=24.35 E-value=1e+02 Score=20.92 Aligned_cols=27 Identities=15% Similarity=0.224 Sum_probs=20.5
Q ss_pred CCHHHHHHHHHHHHhcCCeeeEeecCC
Q 021264 134 LDIPSTWRAMEALYDSGKARAIGVCNF 160 (315)
Q Consensus 134 ~~~~~~~~~L~~lk~~GkIr~iGvS~~ 160 (315)
.+.+.+-..|+.|.+.|+|+.+...+.
T Consensus 26 ~s~~~ve~mL~~l~~kG~I~~~~~~~~ 52 (69)
T PF09012_consen 26 ISPEAVEAMLEQLIRKGYIRKVDMSSC 52 (69)
T ss_dssp --HHHHHHHHHHHHCCTSCEEEEEE--
T ss_pred cCHHHHHHHHHHHHHCCcEEEecCCCC
Confidence 556777888999999999999987765
No 261
>cd01821 Rhamnogalacturan_acetylesterase_like Rhamnogalacturan_acetylesterase_like subgroup of SGNH-hydrolases. Rhamnogalacturan acetylesterase removes acetyl esters from rhamnogalacturonan substrates, and renders them susceptible to degradation by rhamnogalacturonases. Rhamnogalacturonans are highly branched regions in pectic polysaccharides, consisting of repeating -(1,2)-L-Rha-(1,4)-D-GalUA disaccharide units, with many rhamnose residues substituted by neutral oligosaccharides such as arabinans, galactans and arabinogalactans. Extracellular enzymes participating in the degradation of plant cell wall polymers, such as Rhamnogalacturonan acetylesterase, would typically be found in saprophytic and plant pathogenic fungi and bacteria.
Probab=24.30 E-value=3.8e+02 Score=21.93 Aligned_cols=88 Identities=13% Similarity=0.043 Sum_probs=50.5
Q ss_pred CeeeEeecCCChhhHH------HHHHhc-CCCCcccccccCcccc-------h--------HHHHHHHHHcCceEEEecC
Q 021264 151 KARAIGVCNFSTKKLG------DLLEIA-RVPPAVNQVECHSSWQ-------Q--------QKLHAFCKSKGVHLSGYSP 208 (315)
Q Consensus 151 kIr~iGvS~~~~~~l~------~~~~~~-~~~~~~~q~~~n~~~~-------~--------~~~~~~~~~~gi~v~~~~p 208 (315)
.|...|++..+..++. +++... ..+..++++-.|-... . ..+++.+++++..++..+|
T Consensus 36 ~v~N~gi~G~ts~~~~~~~~~~~~l~~~~~pdlVii~~G~ND~~~~~~~~~~~~~~~~~nl~~ii~~~~~~~~~~il~tp 115 (198)
T cd01821 36 TVVNHAKGGRSSRSFRDEGRWDAILKLIKPGDYVLIQFGHNDQKPKDPEYTEPYTTYKEYLRRYIAEARAKGATPILVTP 115 (198)
T ss_pred EEEeCCCCCccHHHHHhCCcHHHHHhhCCCCCEEEEECCCCCCCCCCCCCCCcHHHHHHHHHHHHHHHHHCCCeEEEECC
Confidence 6778888887765432 333321 2344555555544332 1 4688889999999999887
Q ss_pred CCCCCCCCCc--cccC--CchHHHHHHHHhCCCH
Q 021264 209 LGSPGTRWIK--SDVL--RHPVLKTAAEKLGKTP 238 (315)
Q Consensus 209 l~~gg~~~~~--~~~~--~~~~l~~la~~~~~s~ 238 (315)
.......... .... -.+.++++|+++|+..
T Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 149 (198)
T cd01821 116 VTRRTFDEGGKVEDTLGDYPAAMRELAAEEGVPL 149 (198)
T ss_pred ccccccCCCCcccccchhHHHHHHHHHHHhCCCE
Confidence 6431111110 0011 1367888888888753
No 262
>cd01822 Lysophospholipase_L1_like Lysophospholipase L1-like subgroup of SGNH-hydrolases. The best characterized member in this family is TesA, an E. coli periplasmic protein with thioesterase, esterase, arylesterase, protease and lysophospholipase activity.
Probab=24.11 E-value=3.6e+02 Score=21.31 Aligned_cols=60 Identities=10% Similarity=0.026 Sum_probs=35.6
Q ss_pred cCCeeeEeecCCChhhHH----HHHHhcCCCCcccccccCcccch----------HHHHHHHHHcCceEEEecC
Q 021264 149 SGKARAIGVCNFSTKKLG----DLLEIARVPPAVNQVECHSSWQQ----------QKLHAFCKSKGVHLSGYSP 208 (315)
Q Consensus 149 ~GkIr~iGvS~~~~~~l~----~~~~~~~~~~~~~q~~~n~~~~~----------~~~~~~~~~~gi~v~~~~p 208 (315)
.=.+...|++..+...+. +.+.....+..++++--|-..+. ..+++.+++++..++..++
T Consensus 36 ~~~v~n~g~~G~~~~~~~~~l~~~~~~~~pd~v~i~~G~ND~~~~~~~~~~~~~l~~li~~~~~~~~~vil~~~ 109 (177)
T cd01822 36 DVTVINAGVSGDTTAGGLARLPALLAQHKPDLVILELGGNDGLRGIPPDQTRANLRQMIETAQARGAPVLLVGM 109 (177)
T ss_pred CeEEEecCcCCcccHHHHHHHHHHHHhcCCCEEEEeccCcccccCCCHHHHHHHHHHHHHHHHHCCCeEEEEec
Confidence 345677888887665432 23332233444555555543221 5688889888988887754
No 263
>KOG1196 consensus Predicted NAD-dependent oxidoreductase [General function prediction only]
Probab=24.02 E-value=1e+02 Score=28.25 Aligned_cols=98 Identities=11% Similarity=0.097 Sum_probs=50.8
Q ss_pred hHHHHHHHHHHhCCcE-EecCCCCCCHHHHHHHHHHhhhcCCcCCCCeEEeeccCCCC-CCCCcHHHHHHHHHHhcCCCc
Q 021264 30 IVGNAVDVAIKAGYRH-IDCARLYLNEKEIGFVLKKLFEDGVVKREDLWITSKLWCTD-LAPKDVPEALDNTLQDLQIDY 107 (315)
Q Consensus 30 ~~~~~l~~A~~~Gi~~-~DtA~~Ygse~~lG~~l~~~~~~~~~~R~~~~i~tK~~~~~-~~~~~i~~~ve~sL~~Lg~d~ 107 (315)
...+.|.++...||.. || +-| ..++-..|... + .+.++.++.-+...+ -++..+...-.-.-+|+.+..
T Consensus 211 ~~~~aL~r~~P~GIDiYfe---NVG-G~~lDavl~nM---~--~~gri~~CG~ISqYN~~~~~~~~~l~~ii~Kr~~iqg 281 (343)
T KOG1196|consen 211 DLSAALKRCFPEGIDIYFE---NVG-GKMLDAVLLNM---N--LHGRIAVCGMISQYNLENPEGLHNLSTIIYKRIRIQG 281 (343)
T ss_pred CHHHHHHHhCCCcceEEEe---ccC-cHHHHHHHHhh---h--hccceEeeeeehhccccCCccccchhhheeeeEEeee
Confidence 3445555555555552 33 122 12233344443 1 456677766664322 234445544555555555433
Q ss_pred cceEeeecCCCccCCCCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeeE
Q 021264 108 VDLYLIHWPARMKKGSVGFNPENLLPLDIPSTWRAMEALYDSGKARAI 155 (315)
Q Consensus 108 iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~L~~lk~~GkIr~i 155 (315)
+++-.. . ....+.++.|..+.++|||.+.
T Consensus 282 ---flv~d~--~--------------d~~~k~ld~l~~~ikegKI~y~ 310 (343)
T KOG1196|consen 282 ---FLVSDY--L--------------DKYPKFLDFLLPYIKEGKITYV 310 (343)
T ss_pred ---EEeech--h--------------hhhHHHHHHHHHHHhcCceEEe
Confidence 221110 0 2246788999999999999976
No 264
>COG0809 QueA S-adenosylmethionine:tRNA-ribosyltransferase-isomerase (queuine synthetase) [Translation, ribosomal structure and biogenesis]
Probab=23.80 E-value=1.1e+02 Score=28.20 Aligned_cols=66 Identities=17% Similarity=0.183 Sum_probs=46.0
Q ss_pred HHHHHHHHHhcCC-----eeeEeecCCChhhHHHHHHhcCCCCcccccccCcccchHHHHHHHHHcCceEEEecCC
Q 021264 139 TWRAMEALYDSGK-----ARAIGVCNFSTKKLGDLLEIARVPPAVNQVECHSSWQQQKLHAFCKSKGVHLSGYSPL 209 (315)
Q Consensus 139 ~~~~L~~lk~~Gk-----Ir~iGvS~~~~~~l~~~~~~~~~~~~~~q~~~n~~~~~~~~~~~~~~~gi~v~~~~pl 209 (315)
.++.|++|+++|. .-|+|..+|.+-..+.+.+.. ......+++ ...-+.+..+++.|-.|++-++-
T Consensus 188 t~~LL~kLk~kGv~~afvTLHVGaGTF~pV~~~~i~eH~-MH~E~~~v~----~eta~~i~~~k~~GgRIiaVGTT 258 (348)
T COG0809 188 TEELLEKLKAKGVEIAFVTLHVGAGTFRPVKVENIEEHK-MHSEYYEVP----QETADAINAAKARGGRIIAVGTT 258 (348)
T ss_pred CHHHHHHHHHCCceEEEEEEEecccccccceeccccccc-cchhheecC----HHHHHHHHHHHHcCCeEEEEcch
Confidence 5788999999986 458999999987776554431 222222222 12257899999999999987655
No 265
>PRK11858 aksA trans-homoaconitate synthase; Reviewed
Probab=23.79 E-value=6.1e+02 Score=23.78 Aligned_cols=224 Identities=13% Similarity=0.079 Sum_probs=0.0
Q ss_pred CCccCccccccCcCCcchHHHHHHHHHHhCCcEEecCCCCC--CHHHHHHHHHHhhhcCCcCCCCeEEeeccCCCCCCCC
Q 021264 13 GAKMPSVGLGTWQADPGIVGNAVDVAIKAGYRHIDCARLYL--NEKEIGFVLKKLFEDGVVKREDLWITSKLWCTDLAPK 90 (315)
Q Consensus 13 g~~vs~lglG~~~~~~~~~~~~l~~A~~~Gi~~~DtA~~Yg--se~~lG~~l~~~~~~~~~~R~~~~i~tK~~~~~~~~~ 90 (315)
|..|.--+--..+.+.+...++++.+.+.|+..|=.++..| ....+.+.++.. ++.+ ...++.|.++--
T Consensus 129 G~~v~~~~ed~~r~~~~~l~~~~~~~~~~Ga~~I~l~DT~G~~~P~~v~~lv~~l-------~~~~--~~~l~~H~Hnd~ 199 (378)
T PRK11858 129 GLYVSFSAEDASRTDLDFLIEFAKAAEEAGADRVRFCDTVGILDPFTMYELVKEL-------VEAV--DIPIEVHCHNDF 199 (378)
T ss_pred CCeEEEEeccCCCCCHHHHHHHHHHHHhCCCCEEEEeccCCCCCHHHHHHHHHHH-------HHhc--CCeEEEEecCCc
Q ss_pred cHHHHHHHHHHhcCCCccceEeeecCCCccCCCCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeeEeecC-CChhhHHHHH
Q 021264 91 DVPEALDNTLQDLQIDYVDLYLIHWPARMKKGSVGFNPENLLPLDIPSTWRAMEALYDSGKARAIGVCN-FSTKKLGDLL 169 (315)
Q Consensus 91 ~i~~~ve~sL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~L~~lk~~GkIr~iGvS~-~~~~~l~~~~ 169 (315)
.+--+---.--.-|.+++|. -+-....-... .+.++++.+|+.. .|+.. ++.+.+.++.
T Consensus 200 GlA~AN~laAv~aGa~~vd~-tv~GlGeraGN-----------a~lE~vv~~L~~~--------~g~~~~idl~~l~~~s 259 (378)
T PRK11858 200 GMATANALAGIEAGAKQVHT-TVNGLGERAGN-----------AALEEVVMALKYL--------YGIDLGIDTERLYELS 259 (378)
T ss_pred CHHHHHHHHHHHcCCCEEEE-eeccccccccC-----------ccHHHHHHHHHHH--------hCCCCCcCHHHHHHHH
Q ss_pred HhcCCCCcccccccCcccchHHHHHHHHHcCce-------EEEecCCCCCCCCCCc-----cccCCchHHHHHHHHhCCC
Q 021264 170 EIARVPPAVNQVECHSSWQQQKLHAFCKSKGVH-------LSGYSPLGSPGTRWIK-----SDVLRHPVLKTAAEKLGKT 237 (315)
Q Consensus 170 ~~~~~~~~~~q~~~n~~~~~~~~~~~~~~~gi~-------v~~~~pl~~gg~~~~~-----~~~~~~~~l~~la~~~~~s 237 (315)
+... .....+.....+--.--.++++-||. -..|.|+.- .....+ ...-....+....+++|+.
T Consensus 260 ~~v~---~~~~~~~~~~~pivG~~~F~h~sGiH~~gi~k~~~~Ye~~~P-~~vG~~~~~~~g~~SG~~~v~~~l~~~g~~ 335 (378)
T PRK11858 260 RLVS---KASGIPVPPNKAIVGENAFAHESGIHVDGVLKNPLTYEPFLP-EEVGLERRIVLGKHSGRHALKNKLKEYGIE 335 (378)
T ss_pred HHHH---HHhCcCCCCCCccccchhhhhhccccHHHHhCCcccccccCH-HHcCCcccccccccccHHHHHHHHHHcCCC
Q ss_pred HHHHHHHHHhhcCCeeecCCCCHHHHHHhhcccCcccCHHHHHHH
Q 021264 238 PAQVALRWGLQMGHSVLPKSTNEARIKENFDIFDWSISEDLFVKF 282 (315)
Q Consensus 238 ~aq~al~~~l~~~~~~i~G~~~~~~l~~nl~a~~~~Lt~e~~~~l 282 (315)
+..-.+.-++ +.+++.-.....+++++|+..|
T Consensus 336 ~~~~~~~~~~-------------~~vk~~~~~~~~~~~~~el~~~ 367 (378)
T PRK11858 336 LSREELCELL-------------EKVKELSERKKRSLTDEELKEL 367 (378)
T ss_pred CCHHHHHHHH-------------HHHHHHHHhcCCCCCHHHHHHH
No 266
>PRK08776 cystathionine gamma-synthase; Provisional
Probab=23.71 E-value=6.3e+02 Score=23.90 Aligned_cols=72 Identities=14% Similarity=0.104 Sum_probs=42.2
Q ss_pred HHHHHHHHHHhcCCeeeEeecCCChhhHHHHHHhcCCCCcccccccCcccch---HHHHHHHHHcCceEEEecCCC
Q 021264 138 STWRAMEALYDSGKARAIGVCNFSTKKLGDLLEIARVPPAVNQVECHSSWQQ---QKLHAFCKSKGVHLSGYSPLG 210 (315)
Q Consensus 138 ~~~~~L~~lk~~GkIr~iGvS~~~~~~l~~~~~~~~~~~~~~q~~~n~~~~~---~~~~~~~~~~gi~v~~~~pl~ 210 (315)
..+..++.+.+.+.++.+-+...+.+.+++.+.. ..+..++..+-|+...- .++.+.|+++|+.++.=.+.+
T Consensus 111 ~t~~~~~~~~~~~g~~v~~v~~~d~~~l~~~i~~-~tklV~l~~P~NPtG~v~dl~~I~~la~~~gi~vIvD~a~a 185 (405)
T PRK08776 111 GSWRLFNALAKKGHFALITADLTDPRSLADALAQ-SPKLVLIETPSNPLLRITDLRFVIEAAHKVGALTVVDNTFL 185 (405)
T ss_pred HHHHHHHHHHHhcCcEEEEECCCCHHHHHHhcCc-CCeEEEEECCCCCCCccCCHHHHHHHHHHcCCEEEEECCCc
Confidence 4455555554445566566555566666665531 23334444455554332 678999999999888755543
No 267
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=23.68 E-value=1.1e+02 Score=27.64 Aligned_cols=65 Identities=15% Similarity=0.201 Sum_probs=46.6
Q ss_pred HHHHHHHHHHhcCCCccceEeeecCCCccCCCCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeeEeecCCChhhHHHHHH
Q 021264 92 VPEALDNTLQDLQIDYVDLYLIHWPARMKKGSVGFNPENLLPLDIPSTWRAMEALYDSGKARAIGVCNFSTKKLGDLLE 170 (315)
Q Consensus 92 i~~~ve~sL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~L~~lk~~GkIr~iGvS~~~~~~l~~~~~ 170 (315)
+++.+.=.+.-++ ..++++|..|....+. ....++++.|.++.++|. +.|=+|+|..+.++.+++
T Consensus 141 ~kqrl~ia~aL~~--~P~lliLDEPt~GLDp-----------~~~~~~~~~l~~l~~~g~-~tvlissH~l~e~~~~~d 205 (293)
T COG1131 141 MKQRLSIALALLH--DPELLILDEPTSGLDP-----------ESRREIWELLRELAKEGG-VTILLSTHILEEAEELCD 205 (293)
T ss_pred HHHHHHHHHHHhc--CCCEEEECCCCcCCCH-----------HHHHHHHHHHHHHHhCCC-cEEEEeCCcHHHHHHhCC
Confidence 4555555554453 3588888888764322 446788999999999996 468899999888887754
No 268
>PLN03228 methylthioalkylmalate synthase; Provisional
Probab=23.63 E-value=6.5e+02 Score=24.84 Aligned_cols=98 Identities=12% Similarity=0.188 Sum_probs=54.7
Q ss_pred HHHHHHHHHHhcCCCccceEeeecCCCccCCCCCCCCCCCCCCCHHHHHHHHHHHHhcC----------CeeeEeecCCC
Q 021264 92 VPEALDNTLQDLQIDYVDLYLIHWPARMKKGSVGFNPENLLPLDIPSTWRAMEALYDSG----------KARAIGVCNFS 161 (315)
Q Consensus 92 i~~~ve~sL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~L~~lk~~G----------kIr~iGvS~~~ 161 (315)
-+..+-+.|.++|+++|.+-+ |... .+.+++++.+.+.+ ...-.+++...
T Consensus 107 eKi~Ia~~L~~~GVd~IEvG~---Pa~s-----------------~~e~e~i~~i~~~~~~~~~~~~~l~~~i~a~~R~~ 166 (503)
T PLN03228 107 QKLEIARQLAKLRVDIMEVGF---PGSS-----------------EEEFEAVKTIAKTVGNEVDEETGYVPVICGIARCK 166 (503)
T ss_pred HHHHHHHHHHHcCCCEEEEeC---CCCC-----------------HHHHHHHHHHHHhcccccccccccceEEeeecccC
Confidence 467788889999999888854 4321 23344455554332 12334666666
Q ss_pred hhhHHHHHHhc---CCCCcccccccCcccch--------------HHHHHHHHHcCceEEEecCC
Q 021264 162 TKKLGDLLEIA---RVPPAVNQVECHSSWQQ--------------QKLHAFCKSKGVHLSGYSPL 209 (315)
Q Consensus 162 ~~~l~~~~~~~---~~~~~~~q~~~n~~~~~--------------~~~~~~~~~~gi~v~~~~pl 209 (315)
...++.+++.. +.+-..+-+..+..+.. .+.+++++++|...+.+++-
T Consensus 167 ~~dId~a~~a~~~a~~~~V~i~i~~Sd~h~~~kl~~s~ee~l~~~~~~V~~Ak~~G~~~v~f~~E 231 (503)
T PLN03228 167 KRDIEAAWEALKYAKRPRILAFTSTSDIHMKYKLKKTKEEVIEMAVSSIRYAKSLGFHDIQFGCE 231 (503)
T ss_pred HhhHHHHHHhhcccCCCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCceEEeccc
Confidence 66777776642 11112222222322211 45788999999865555553
No 269
>COG2185 Sbm Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding) [Lipid metabolism]
Probab=23.52 E-value=2.2e+02 Score=22.94 Aligned_cols=74 Identities=19% Similarity=0.146 Sum_probs=0.0
Q ss_pred eeeEeecCCCh--hhHHHHHHhcCCCCcccccccCcccch-HHHHHHHHHcCceEEEecCCCCCCCCCCccccCCchHHH
Q 021264 152 ARAIGVCNFST--KKLGDLLEIARVPPAVNQVECHSSWQQ-QKLHAFCKSKGVHLSGYSPLGSPGTRWIKSDVLRHPVLK 228 (315)
Q Consensus 152 Ir~iGvS~~~~--~~l~~~~~~~~~~~~~~q~~~n~~~~~-~~~~~~~~~~gi~v~~~~pl~~gg~~~~~~~~~~~~~l~ 228 (315)
+..+|+..|+. ..+..++.. .-+++-+....+. .+.+..|-+.++.++..|.+.++ .....+.+.
T Consensus 17 vak~GlDgHd~gakvia~~l~d-----~GfeVi~~g~~~tp~e~v~aA~~~dv~vIgvSsl~g~-------h~~l~~~lv 84 (143)
T COG2185 17 VAKLGLDGHDRGAKVIARALAD-----AGFEVINLGLFQTPEEAVRAAVEEDVDVIGVSSLDGG-------HLTLVPGLV 84 (143)
T ss_pred EeccCccccccchHHHHHHHHh-----CCceEEecCCcCCHHHHHHHHHhcCCCEEEEEeccch-------HHHHHHHHH
Q ss_pred HHHHHhCCC
Q 021264 229 TAAEKLGKT 237 (315)
Q Consensus 229 ~la~~~~~s 237 (315)
+.+++.|..
T Consensus 85 e~lre~G~~ 93 (143)
T COG2185 85 EALREAGVE 93 (143)
T ss_pred HHHHHhCCc
No 270
>PRK14332 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=23.44 E-value=5.4e+02 Score=24.83 Aligned_cols=125 Identities=11% Similarity=0.165 Sum_probs=62.1
Q ss_pred CCCCHHHHHHHHHHHHhcCCeeeEeecC-----CCh--hhHHHHHHhc-CCCCcccccccC---cccchHHHHHHHHHcC
Q 021264 132 LPLDIPSTWRAMEALYDSGKARAIGVCN-----FST--KKLGDLLEIA-RVPPAVNQVECH---SSWQQQKLHAFCKSKG 200 (315)
Q Consensus 132 ~~~~~~~~~~~L~~lk~~GkIr~iGvS~-----~~~--~~l~~~~~~~-~~~~~~~q~~~n---~~~~~~~~~~~~~~~g 200 (315)
-..+.+++++.++.|.++| ++.|-+.. +.. ..+.++++.. ... ....+.+. +..-.+++++..++.+
T Consensus 181 rsr~~e~Iv~Ei~~l~~~G-~kei~l~~~~~~~y~~~~~~l~~Ll~~l~~~~-~~~~ir~~~~~p~~~~~ell~~m~~~~ 258 (449)
T PRK14332 181 RSRDPKSIVREIQDLQEKG-IRQVTLLGQNVNSYKEQSTDFAGLIQMLLDET-TIERIRFTSPHPKDFPDHLLSLMAKNP 258 (449)
T ss_pred ccCCHHHHHHHHHHHHHCC-CeEEEEecccCCcccCCcccHHHHHHHHhcCC-CcceEEEECCCcccCCHHHHHHHHhCC
Confidence 3367899999999999987 67775442 211 1233443321 111 11223332 2333478899998877
Q ss_pred --ceEEEecCCCCCCCCCCccccCCchHHHHHHHHhCCCHHHHHHHHHhhc-C-----CeeecCC--CCHHHHHHhhcc
Q 021264 201 --VHLSGYSPLGSPGTRWIKSDVLRHPVLKTAAEKLGKTPAQVALRWGLQM-G-----HSVLPKS--TNEARIKENFDI 269 (315)
Q Consensus 201 --i~v~~~~pl~~gg~~~~~~~~~~~~~l~~la~~~~~s~aq~al~~~l~~-~-----~~~i~G~--~~~~~l~~nl~a 269 (315)
+.-+.. |+..| ....|+.+.+.+...-..-+++++... | ..+|+|. -+.+++++.++.
T Consensus 259 ~~~~~l~l-gvQSg----------sd~vLk~m~R~~t~~~~~~~i~~lr~~~p~i~i~td~IvGfPgET~edf~~tl~~ 326 (449)
T PRK14332 259 RFCPNIHL-PLQAG----------NTRVLEEMKRSYSKEEFLDVVKEIRNIVPDVGITTDIIVGFPNETEEEFEDTLAV 326 (449)
T ss_pred CccceEEE-CCCcC----------CHHHHHhhCCCCCHHHHHHHHHHHHHhCCCCEEEEEEEeeCCCCCHHHHHHHHHH
Confidence 333333 44332 122333333322222222344444432 1 2356663 666666666553
No 271
>COG4943 Predicted signal transduction protein containing sensor and EAL domains [Signal transduction mechanisms]
Probab=23.39 E-value=7.2e+02 Score=24.44 Aligned_cols=115 Identities=19% Similarity=0.240 Sum_probs=70.2
Q ss_pred CCCeEEeeccCCCCCCCCcHHHHHHHHHHhcCCCccceEeeecCCCccCCCCCCCCCCCCCCCHHHHHHHHHHHHhcCCe
Q 021264 73 REDLWITSKLWCTDLAPKDVPEALDNTLQDLQIDYVDLYLIHWPARMKKGSVGFNPENLLPLDIPSTWRAMEALYDSGKA 152 (315)
Q Consensus 73 R~~~~i~tK~~~~~~~~~~i~~~ve~sL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~L~~lk~~GkI 152 (315)
+.+++|+--+...|.....+..-+++.+++-++..=-+. |.--++ + .++.......+.++++.|.-
T Consensus 351 ~~~l~VsINl~a~Dl~s~rli~~~~~~l~~~~v~pqQI~-lElTER---~----------f~D~~~~~~iI~r~ReaG~~ 416 (524)
T COG4943 351 HRDLHVSINLSASDLASPRLIDRLNRKLAQYQVRPQQIA-LELTER---T----------FADPKKMTPIILRLREAGHE 416 (524)
T ss_pred CcceEEEEeeeehhhcCchHHHHHHHHHHhcCcChHHhe-eehhhh---h----------hcCchhhhHHHHHHHhcCCe
Confidence 667899988877888788899999999998887532222 111111 0 15667778889999999983
Q ss_pred eeEeecCCCh--hhHHHHHHhcCCCCcccccccCccc--------c--hHHHHHHHHHcCceEEEe
Q 021264 153 RAIGVCNFST--KKLGDLLEIARVPPAVNQVECHSSW--------Q--QQKLHAFCKSKGVHLSGY 206 (315)
Q Consensus 153 r~iGvS~~~~--~~l~~~~~~~~~~~~~~q~~~n~~~--------~--~~~~~~~~~~~gi~v~~~ 206 (315)
|-+-.|+. ..+..+.+. +.+..-+.=+..+ . .+.+++.|++.|+.+++=
T Consensus 417 --IyIDDFGTGYSnL~YLq~L---~VDaLKIDKsFvdtlg~~~a~~~I~~hII~MAk~L~L~iVaE 477 (524)
T COG4943 417 --IYIDDFGTGYSNLHYLQSL---PVDALKIDKSFVDTLGTDSASHLIAPHIIEMAKSLGLKIVAE 477 (524)
T ss_pred --EEEccCcCcchhHHHHhhC---CccceeccHHHHHhhccCcccchhHHHHHHHHHHcCCcEEee
Confidence 43444332 233333322 1222222111111 0 157899999999999883
No 272
>PRK10060 RNase II stability modulator; Provisional
Probab=23.39 E-value=6.8e+02 Score=25.37 Aligned_cols=114 Identities=15% Similarity=0.202 Sum_probs=72.4
Q ss_pred CeEEeeccCCCCCCCCcHHHHHHHHHHhcCCCccceEeeecCCCccCCCCCCCCCCCCCCCHHHHHHHHHHHHhcCCeee
Q 021264 75 DLWITSKLWCTDLAPKDVPEALDNTLQDLQIDYVDLYLIHWPARMKKGSVGFNPENLLPLDIPSTWRAMEALYDSGKARA 154 (315)
Q Consensus 75 ~~~i~tK~~~~~~~~~~i~~~ve~sL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~L~~lk~~GkIr~ 154 (315)
.+.|+--+.........+...+.+.|++.++.. ..+.|--..... ..+...+.+.+..|++.|- .
T Consensus 492 ~~~i~vNls~~~l~~~~~~~~l~~~l~~~~~~~-~~l~lEitE~~~------------~~~~~~~~~~l~~L~~~G~--~ 556 (663)
T PRK10060 492 NLRVAVNVSARQLADQTIFTALKQALQELNFEY-CPIDVELTESCL------------IENEELALSVIQQFSQLGA--Q 556 (663)
T ss_pred CeEEEEEcCHHHhCCCcHHHHHHHHHHHHCcCc-ceEEEEECCchh------------hcCHHHHHHHHHHHHHCCC--E
Confidence 345555555445555678899999999988753 333333222110 0345678899999999998 6
Q ss_pred EeecCCCh--hhHHHHHHhcCCCCcccccccCccc--------ch--HHHHHHHHHcCceEEEe
Q 021264 155 IGVCNFST--KKLGDLLEIARVPPAVNQVECHSSW--------QQ--QKLHAFCKSKGVHLSGY 206 (315)
Q Consensus 155 iGvS~~~~--~~l~~~~~~~~~~~~~~q~~~n~~~--------~~--~~~~~~~~~~gi~v~~~ 206 (315)
|++..|+. ..+..+.. .+++.+-+.-+... +. ..++..|+..|+.|++=
T Consensus 557 ialDdfGtg~ssl~~L~~---l~~d~iKiD~sfv~~i~~~~~~~~~v~~ii~~a~~lg~~viAe 617 (663)
T PRK10060 557 VHLDDFGTGYSSLSQLAR---FPIDAIKLDQSFVRDIHKQPVSQSLVRAIVAVAQALNLQVIAE 617 (663)
T ss_pred EEEECCCCchhhHHHHHh---CCCCEEEECHHHHhccccCcchHHHHHHHHHHHHHCCCcEEEe
Confidence 77777763 34444433 45566555543322 11 56899999999999985
No 273
>TIGR03217 4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase. Members of this protein family are 4-hydroxy-2-oxovalerate aldolase, also called 4-hydroxy-2-ketovalerate aldolase and 2-oxo-4-hydroxypentanoate aldolase. This enzyme, part of the pathway for the meta-cleavage of catechol, produces pyruvate and acetaldehyde. Acetaldehyde is then converted by acetaldehyde dehydrogenase (acylating) (DmpF; EC 1.2.1.10) to acetyl-CoA. The two enzymes are tightly associated.
Probab=23.32 E-value=5.9e+02 Score=23.46 Aligned_cols=26 Identities=19% Similarity=0.077 Sum_probs=22.8
Q ss_pred CcCCcchHHHHHHHHHHhCCcEEecC
Q 021264 24 WQADPGIVGNAVDVAIKAGYRHIDCA 49 (315)
Q Consensus 24 ~~~~~~~~~~~l~~A~~~Gi~~~DtA 49 (315)
++++.++..++++..-+.||..++.+
T Consensus 19 ~~f~~~~~~~ia~~Ld~aGV~~IEvg 44 (333)
T TIGR03217 19 HQFTIEQVRAIAAALDEAGVDAIEVT 44 (333)
T ss_pred CcCCHHHHHHHHHHHHHcCCCEEEEe
Confidence 45677999999999999999999994
No 274
>PF13289 SIR2_2: SIR2-like domain
Probab=23.29 E-value=2.4e+02 Score=21.57 Aligned_cols=101 Identities=13% Similarity=0.056 Sum_probs=49.7
Q ss_pred cCCCccceEeeecCCCccCCCCCCCCCCCCC--CCHHHHHHHHHHHHhcCCeeeEeecCCChhhHHHHHHhcC-CCCccc
Q 021264 103 LQIDYVDLYLIHWPARMKKGSVGFNPENLLP--LDIPSTWRAMEALYDSGKARAIGVCNFSTKKLGDLLEIAR-VPPAVN 179 (315)
Q Consensus 103 Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~--~~~~~~~~~L~~lk~~GkIr~iGvS~~~~~~l~~~~~~~~-~~~~~~ 179 (315)
.....+-++-||.--...+.+..++..+... ......++.|..+.....+-.||.|-.++ .+..++.... ......
T Consensus 38 ~~~~~~~i~klHG~~~~~~~~~vlt~~~y~~~~~~~~~~~~~l~~~l~~~~~lfiGys~~D~-~i~~~l~~~~~~~~~~~ 116 (143)
T PF13289_consen 38 SSSGRPPIYKLHGSLDWDPESIVLTEDDYEEYYSSNPWFPNFLRSLLRSKTLLFIGYSFNDP-DIRQLLRSALENSGKSR 116 (143)
T ss_pred ccCCCcEEEEEecCcccCCCCEEEcHHHHHHHhhhHHHHHHHHHHHHcCCCEEEEEECCCCH-HHHHHHHHHHHhccCCC
Confidence 3445677777775441111111111111100 02345677788888888999999996554 4444443221 111101
Q ss_pred ccccCcccc--hHHHHHHHHHcCceEE
Q 021264 180 QVECHSSWQ--QQKLHAFCKSKGVHLS 204 (315)
Q Consensus 180 q~~~n~~~~--~~~~~~~~~~~gi~v~ 204 (315)
+-.|-.... ......+.+++||.+|
T Consensus 117 ~~~~~v~~~~~~~~~~~~~~~~~i~~I 143 (143)
T PF13289_consen 117 PRHYIVIPDPDDENEREFLEKYGIEVI 143 (143)
T ss_pred ccEEEEEcCCchHHHHHHHHHcCCEEC
Confidence 111111111 2456777888888764
No 275
>PRK08195 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase,; Validated
Probab=23.28 E-value=6e+02 Score=23.48 Aligned_cols=111 Identities=11% Similarity=0.088 Sum_probs=55.8
Q ss_pred CCCCCcHHHHHHHHHHhcCCCccceEeeecCCCccCCCCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeeEeecC---CCh
Q 021264 86 DLAPKDVPEALDNTLQDLQIDYVDLYLIHWPARMKKGSVGFNPENLLPLDIPSTWRAMEALYDSGKARAIGVCN---FST 162 (315)
Q Consensus 86 ~~~~~~i~~~ve~sL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~L~~lk~~GkIr~iGvS~---~~~ 162 (315)
.++.+ -+..+-+.|.+.|+++|.+-+.-.... .+....... .+..+.++.+..... ..+...+.. .+.
T Consensus 21 ~f~~~-~~~~i~~~L~~aGv~~IEvg~~~g~g~---~s~~~g~~~---~~~~e~i~~~~~~~~--~~~~~~ll~pg~~~~ 91 (337)
T PRK08195 21 QYTLE-QVRAIARALDAAGVPVIEVTHGDGLGG---SSFNYGFGA---HTDEEYIEAAAEVVK--QAKIAALLLPGIGTV 91 (337)
T ss_pred ccCHH-HHHHHHHHHHHcCCCEEEeecCCCCCC---ccccCCCCC---CCHHHHHHHHHHhCC--CCEEEEEeccCcccH
Confidence 34444 456677779999999999874211100 000000000 233344444433332 344444332 245
Q ss_pred hhHHHHHHhcCCCCccccc--ccCcccchHHHHHHHHHcCceEEEecC
Q 021264 163 KKLGDLLEIARVPPAVNQV--ECHSSWQQQKLHAFCKSKGVHLSGYSP 208 (315)
Q Consensus 163 ~~l~~~~~~~~~~~~~~q~--~~n~~~~~~~~~~~~~~~gi~v~~~~p 208 (315)
+.++.+.+. ++ +.+.+ +.+-.+.-.+.+++++++|..+...-.
T Consensus 92 ~dl~~a~~~-gv--d~iri~~~~~e~~~~~~~i~~ak~~G~~v~~~l~ 136 (337)
T PRK08195 92 DDLKMAYDA-GV--RVVRVATHCTEADVSEQHIGLARELGMDTVGFLM 136 (337)
T ss_pred HHHHHHHHc-CC--CEEEEEEecchHHHHHHHHHHHHHCCCeEEEEEE
Confidence 566665553 23 33333 333322336788999999988777533
No 276
>PRK04165 acetyl-CoA decarbonylase/synthase complex subunit gamma; Provisional
Probab=23.13 E-value=6.5e+02 Score=24.45 Aligned_cols=81 Identities=14% Similarity=0.165 Sum_probs=53.7
Q ss_pred ccceEeeecCCCccCCCCCCCCCCCCCCCHHHHHHHHHHHHhc-CCeeeEeecCCChhhHHHHHHhcC-CCCcccccccC
Q 021264 107 YVDLYLIHWPARMKKGSVGFNPENLLPLDIPSTWRAMEALYDS-GKARAIGVCNFSTKKLGDLLEIAR-VPPAVNQVECH 184 (315)
Q Consensus 107 ~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~L~~lk~~-GkIr~iGvS~~~~~~l~~~~~~~~-~~~~~~q~~~n 184 (315)
.+|++-|+.... +.+.+.+.++.+++. +. -+.+.+++++.+++.++.+. ..+.+.-+..
T Consensus 127 ~AD~IaL~~~s~----------------dp~~v~~~Vk~V~~~~dv--PLSIDT~dpevleaAleagad~~plI~Sat~- 187 (450)
T PRK04165 127 KLDMVALRNASG----------------DPEKFAKAVKKVAETTDL--PLILCSEDPAVLKAALEVVADRKPLLYAATK- 187 (450)
T ss_pred cCCEEEEeCCCC----------------CHHHHHHHHHHHHHhcCC--CEEEeCCCHHHHHHHHHhcCCCCceEEecCc-
Confidence 477777776432 244566777777663 44 37888999999999998763 3333333221
Q ss_pred cccchHHHHHHHHHcCceEEEecC
Q 021264 185 SSWQQQKLHAFCKSKGVHLSGYSP 208 (315)
Q Consensus 185 ~~~~~~~~~~~~~~~gi~v~~~~p 208 (315)
+.-+.+.+.|+++|..++...+
T Consensus 188 --dN~~~m~~la~~yg~pvVv~~~ 209 (450)
T PRK04165 188 --ENYEEMAELAKEYNCPLVVKAP 209 (450)
T ss_pred --chHHHHHHHHHHcCCcEEEEch
Confidence 1126788889999998888654
No 277
>PF03599 CdhD: CO dehydrogenase/acetyl-CoA synthase delta subunit; InterPro: IPR016041 This entry represents a conserved region predicted to form a TIM alpha/beta barrel, and is found in the delta subunit of a number of CO dehydrogenase/acetyl-CoA synthase enzymes.; PDB: 2H9A_B 2YCL_B 4DJF_E 4DJD_C 4DJE_C.
Probab=23.07 E-value=5.2e+02 Score=24.54 Aligned_cols=84 Identities=15% Similarity=0.186 Sum_probs=51.9
Q ss_pred ccceEeeecCCCccCCCCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeeEeecCCChhhHHHHHHhcCC-CCcccccccCc
Q 021264 107 YVDLYLIHWPARMKKGSVGFNPENLLPLDIPSTWRAMEALYDSGKARAIGVCNFSTKKLGDLLEIARV-PPAVNQVECHS 185 (315)
Q Consensus 107 ~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~L~~lk~~GkIr~iGvS~~~~~~l~~~~~~~~~-~~~~~q~~~n~ 185 (315)
.+|++.||.-.. .+.++..++.++..+.-.+ -+=+.+.+++.+.++++.+.. +|-. +..
T Consensus 69 ~~D~Ialr~~S~---------------DPae~fa~~vk~V~~a~~~-PLIL~~~D~evl~aale~~~~~kpLL----~aA 128 (386)
T PF03599_consen 69 GADMIALRLESG---------------DPAEEFAKAVKKVAEAVDV-PLILCGCDPEVLKAALEACAGKKPLL----YAA 128 (386)
T ss_dssp E-SEEEEE-GGG---------------STHHHHHHHHHHHHHC-SS-EEEEESSHHHHHHHHHHHTTTS--EE----EEE
T ss_pred cccEEEEEecCC---------------ChHHHHHHHHHHHHHhcCC-CEEEEeCCHHHHHHHHHHhCcCCcEE----eEc
Confidence 688888886432 1136777777777765444 344555589999999988752 2222 111
Q ss_pred ccch-HHHHHHHHHcCceEEEecCCC
Q 021264 186 SWQQ-QKLHAFCKSKGVHLSGYSPLG 210 (315)
Q Consensus 186 ~~~~-~~~~~~~~~~gi~v~~~~pl~ 210 (315)
...+ +++.+.|.++|..+++.+|..
T Consensus 129 t~eNyk~m~~lA~~y~~pl~v~sp~D 154 (386)
T PF03599_consen 129 TEENYKAMAALAKEYGHPLIVSSPID 154 (386)
T ss_dssp BTTTHHHHHHHHHHCT-EEEEE-SSC
T ss_pred CHHHHHHHHHHHHHcCCeEEEEeccc
Confidence 1222 689999999999999999883
No 278
>PRK13347 coproporphyrinogen III oxidase; Provisional
Probab=22.98 E-value=6.8e+02 Score=24.06 Aligned_cols=113 Identities=15% Similarity=0.220 Sum_probs=0.0
Q ss_pred HHHHHHHHHhCCcEEecCCCCC------------CHHHHHHHHHHhhhcCCcCCCCeEEeeccCCCCCCCCcHHHHHHHH
Q 021264 32 GNAVDVAIKAGYRHIDCARLYL------------NEKEIGFVLKKLFEDGVVKREDLWITSKLWCTDLAPKDVPEALDNT 99 (315)
Q Consensus 32 ~~~l~~A~~~Gi~~~DtA~~Yg------------se~~lG~~l~~~~~~~~~~R~~~~i~tK~~~~~~~~~~i~~~ve~s 99 (315)
.+.++...+.|+|.+..+---. +.+.+-++++..-+.| ++.=.+.+..-+ +..+.+.+.+.++..
T Consensus 152 ~e~l~~L~~~G~~rvsiGvQS~~~~vl~~l~R~~~~~~~~~ai~~lr~~G-~~~v~~dli~Gl--Pgqt~e~~~~tl~~~ 228 (453)
T PRK13347 152 AEMLQALAALGFNRASFGVQDFDPQVQKAINRIQPEEMVARAVELLRAAG-FESINFDLIYGL--PHQTVESFRETLDKV 228 (453)
T ss_pred HHHHHHHHHcCCCEEEECCCCCCHHHHHHhCCCCCHHHHHHHHHHHHhcC-CCcEEEeEEEeC--CCCCHHHHHHHHHHH
Q ss_pred HHhcCCCccceEee-ecCC------------CccCCCCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeeEeecCC
Q 021264 100 LQDLQIDYVDLYLI-HWPA------------RMKKGSVGFNPENLLPLDIPSTWRAMEALYDSGKARAIGVCNF 160 (315)
Q Consensus 100 L~~Lg~d~iDl~~l-H~p~------------~~~~~~~~~~~~~~~~~~~~~~~~~L~~lk~~GkIr~iGvS~~ 160 (315)
+ +++.++|.++.+ |.|. ..+.. ...+....+.+.|.+.|-.+ +|+++|
T Consensus 229 ~-~l~p~~i~~y~l~~~p~~~~~~~~~~~~~lp~~~-----------~~~~~~~~~~~~L~~~Gy~~-~~~~~f 289 (453)
T PRK13347 229 I-ALSPDRIAVFGYAHVPSRRKNQRLIDEAALPDAE-----------ERLRQARAVADRLLAAGYVP-IGLDHF 289 (453)
T ss_pred H-hcCCCEEEEeccccccchhhHHhcCCccCCcCHH-----------HHHHHHHHHHHHHHHCCCEE-Eeccce
No 279
>COG0352 ThiE Thiamine monophosphate synthase [Coenzyme metabolism]
Probab=22.90 E-value=2.9e+02 Score=23.71 Aligned_cols=63 Identities=8% Similarity=0.031 Sum_probs=37.2
Q ss_pred HHHHHHHHhcCCeeeEeecCCChhhHHHHHHhcCCCCcccccccCcccch----------HHHHHHHHHcC-ceEEEecC
Q 021264 140 WRAMEALYDSGKARAIGVCNFSTKKLGDLLEIARVPPAVNQVECHSSWQQ----------QKLHAFCKSKG-VHLSGYSP 208 (315)
Q Consensus 140 ~~~L~~lk~~GkIr~iGvS~~~~~~l~~~~~~~~~~~~~~q~~~n~~~~~----------~~~~~~~~~~g-i~v~~~~p 208 (315)
.....++...++ .||+|+|+.+.+.++.+.. ++++- +.+++++ .+.+...++.. +++++.+-
T Consensus 94 ~~~ar~~~~~~~--iIG~S~h~~eea~~A~~~g---~DYv~--~GpifpT~tK~~~~~~G~~~l~~~~~~~~iP~vAIGG 166 (211)
T COG0352 94 LAEARELLGPGL--IIGLSTHDLEEALEAEELG---ADYVG--LGPIFPTSTKPDAPPLGLEGLREIRELVNIPVVAIGG 166 (211)
T ss_pred hHHHHHhcCCCC--EEEeecCCHHHHHHHHhcC---CCEEE--ECCcCCCCCCCCCCccCHHHHHHHHHhCCCCEEEEcC
Confidence 344556666666 4999999999888887653 12211 1111111 35566666665 88887643
Q ss_pred C
Q 021264 209 L 209 (315)
Q Consensus 209 l 209 (315)
+
T Consensus 167 i 167 (211)
T COG0352 167 I 167 (211)
T ss_pred C
Confidence 3
No 280
>PRK14340 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=22.86 E-value=6.6e+02 Score=24.17 Aligned_cols=34 Identities=15% Similarity=0.094 Sum_probs=23.2
Q ss_pred ccCccccccCcCCcchHHHHHHHHHHhCCcEEecC
Q 021264 15 KMPSVGLGTWQADPGIVGNAVDVAIKAGYRHIDCA 49 (315)
Q Consensus 15 ~vs~lglG~~~~~~~~~~~~l~~A~~~Gi~~~DtA 49 (315)
++-...||| +....+...+.....+.|+...+..
T Consensus 8 ~~~i~tlGC-~~N~~dse~~~~~l~~~G~~~~~~~ 41 (445)
T PRK14340 8 KFYIHTFGC-QMNQADSEIITALLQDEGYVPAASE 41 (445)
T ss_pred EEEEEecCC-CCcHHHHHHHHHHHHHCcCEECCCc
Confidence 366678999 4455566666666677898777763
No 281
>COG2109 BtuR ATP:corrinoid adenosyltransferase [Coenzyme metabolism]
Probab=22.76 E-value=3.2e+02 Score=23.21 Aligned_cols=70 Identities=11% Similarity=0.070 Sum_probs=44.6
Q ss_pred CcHHHHHHHHHHhcCCCccceEeeecCCCccCCCCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeeEeecCCChhhHHHHH
Q 021264 90 KDVPEALDNTLQDLQIDYVDLYLIHWPARMKKGSVGFNPENLLPLDIPSTWRAMEALYDSGKARAIGVCNFSTKKLGDLL 169 (315)
Q Consensus 90 ~~i~~~ve~sL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~L~~lk~~GkIr~iGvS~~~~~~l~~~~ 169 (315)
...++.++.+++.+.-+..|++.|........-.+ .+.+++.+.|..=-..--|-.-| ..-+..+.++.
T Consensus 105 ~aa~~~w~~a~~~l~~~~ydlviLDEl~~al~~g~---------l~~eeV~~~l~~kP~~~~vIiTG--r~ap~~lie~A 173 (198)
T COG2109 105 AAAKAGWEHAKEALADGKYDLVILDELNYALRYGL---------LPLEEVVALLKARPEHTHVIITG--RGAPPELIELA 173 (198)
T ss_pred HHHHHHHHHHHHHHhCCCCCEEEEehhhHHHHcCC---------CCHHHHHHHHhcCCCCcEEEEEC--CCCCHHHHHHH
Confidence 46788999999999999999999987665432221 67778877776333333343444 22334444443
Q ss_pred H
Q 021264 170 E 170 (315)
Q Consensus 170 ~ 170 (315)
+
T Consensus 174 D 174 (198)
T COG2109 174 D 174 (198)
T ss_pred H
Confidence 3
No 282
>TIGR00433 bioB biotin synthetase. Catalyzes the last step of the biotin biosynthesis pathway.
Probab=22.73 E-value=5.4e+02 Score=22.78 Aligned_cols=71 Identities=7% Similarity=0.073 Sum_probs=39.3
Q ss_pred CCHHHHHHHHHHHHhcCCee-eEeecCCC--hh----hHHHHHHhcC-CCCcccccccCcccchHHHHHHHHHcCceEEE
Q 021264 134 LDIPSTWRAMEALYDSGKAR-AIGVCNFS--TK----KLGDLLEIAR-VPPAVNQVECHSSWQQQKLHAFCKSKGVHLSG 205 (315)
Q Consensus 134 ~~~~~~~~~L~~lk~~GkIr-~iGvS~~~--~~----~l~~~~~~~~-~~~~~~q~~~n~~~~~~~~~~~~~~~gi~v~~ 205 (315)
.+.+++++.++++++.|.-+ .+..+++. .. .+.++.+... ... .+..+.-..+.+.++..++.|+..+.
T Consensus 62 ~~~eei~~~~~~~~~~g~~~~~l~~~g~~~~~~~~~~~~~~i~~~~~~~~i---~~~~~~g~~~~e~l~~Lk~aG~~~v~ 138 (296)
T TIGR00433 62 KKVDEVLEEARKAKAAGATRFCLVASGRGPKDREFMEYVEAMVQIVEEMGL---KTCATLGLLDPEQAKRLKDAGLDYYN 138 (296)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEEEecCCCChHHHHHHHHHHHHHHHhCCC---eEEecCCCCCHHHHHHHHHcCCCEEE
Confidence 45678888888888888433 23333332 22 2333333211 111 11223323347889999999988777
Q ss_pred ec
Q 021264 206 YS 207 (315)
Q Consensus 206 ~~ 207 (315)
.+
T Consensus 139 i~ 140 (296)
T TIGR00433 139 HN 140 (296)
T ss_pred Ec
Confidence 65
No 283
>cd04743 NPD_PKS 2-Nitropropane dioxygenase (NPD)-like domain, associated with polyketide synthases (PKS). NPD is part of the nitroalkaneoxidizing enzyme family, that catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDPs are members of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=22.70 E-value=4.5e+02 Score=24.22 Aligned_cols=64 Identities=14% Similarity=0.085 Sum_probs=41.8
Q ss_pred HHHHhcCCeeeEeecCCChhhHHHHHHhc-----CCCCcccccccCcccchHHHHHHHHHcCceEEEec
Q 021264 144 EALYDSGKARAIGVCNFSTKKLGDLLEIA-----RVPPAVNQVECHSSWQQQKLHAFCKSKGVHLSGYS 207 (315)
Q Consensus 144 ~~lk~~GkIr~iGvS~~~~~~l~~~~~~~-----~~~~~~~q~~~n~~~~~~~~~~~~~~~gi~v~~~~ 207 (315)
...-+.|=+..||....+++++++.++.. .-|+-++.+.+.......+.++.+.+.++.++..+
T Consensus 21 aAVS~AGgLG~la~~~~~~e~l~~~i~~~~~l~tdkPfGVnl~~~~~~~~~~~~l~vi~e~~v~~V~~~ 89 (320)
T cd04743 21 VAVAEGGGLPFIALALMRGEQVKALLEETAELLGDKPWGVGILGFVDTELRAAQLAVVRAIKPTFALIA 89 (320)
T ss_pred HHHHhCCccccCCCCCCCHHHHHHHHHHHHHhccCCCeEEEEeccCCCcchHHHHHHHHhcCCcEEEEc
Confidence 33446688888998888898887766433 23444444333222223678999999999998764
No 284
>KOG1720 consensus Protein tyrosine phosphatase CDC14 [Defense mechanisms]
Probab=22.70 E-value=2.5e+02 Score=24.21 Aligned_cols=56 Identities=16% Similarity=0.137 Sum_probs=35.4
Q ss_pred HHHHHHHHc-CceEEEecCCCCCCCCCCccccCCchHHHHHHHHhCCCHHHHHHHHHhhcCCeeecCC
Q 021264 191 KLHAFCKSK-GVHLSGYSPLGSPGTRWIKSDVLRHPVLKTAAEKLGKTPAQVALRWGLQMGHSVLPKS 257 (315)
Q Consensus 191 ~~~~~~~~~-gi~v~~~~pl~~gg~~~~~~~~~~~~~l~~la~~~~~s~aq~al~~~l~~~~~~i~G~ 257 (315)
++.+.|.+. .|+|-++.-|+.-|.+. ---+..++++|+.| |++|+.......|+|.
T Consensus 139 ~i~e~~~~~g~iaVHCkaGlGRTG~li----------Ac~lmy~~g~ta~e-aI~~lR~~RpG~V~gp 195 (225)
T KOG1720|consen 139 KIVENAEKGGKIAVHCKAGLGRTGTLI----------ACYLMYEYGMTAGE-AIAWLRICRPGAVIGP 195 (225)
T ss_pred HHHHHHHhcCeEEEEeccCCCchhHHH----------HHHHHHHhCCCHHH-HHHHHHhcCCccccCH
Confidence 456667664 36777777775544211 12344569999999 9999997655445544
No 285
>PRK14052 effector protein; Provisional
Probab=22.49 E-value=1.7e+02 Score=26.94 Aligned_cols=69 Identities=14% Similarity=0.135 Sum_probs=44.4
Q ss_pred HHHHHHHHhhcCCeeecCCCCHHHHHHhhc-cc--Ccc-cCHHHHHHHHhchhhhhcccccccccCCCCccccccccCC
Q 021264 239 AQVALRWGLQMGHSVLPKSTNEARIKENFD-IF--DWS-ISEDLFVKFSEIEQARLIRGTAYVHDTFGSYRSVEELWDG 313 (315)
Q Consensus 239 aq~al~~~l~~~~~~i~G~~~~~~l~~nl~-a~--~~~-Lt~e~~~~l~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 313 (315)
.+-|.+|++....+ +..+..++..-+. .. ..+ ||++.++.|+++.-.. + +..| +.|.|.||+....=.|
T Consensus 242 ve~AA~WI~~aStS---~~n~a~~it~ylkElAk~k~piISe~~IKdLHaLVm~n-i-g~~~-r~~aGsYRSs~vvIsG 314 (387)
T PRK14052 242 VERAAAWIINASTS---KGNDAENITALLKEYAHNGKDLLNMDNLKELHARLVPN-I-ERDY-RGPAISGGTLPSSIGG 314 (387)
T ss_pred HHHHHHHHHhcccC---CCCcHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHhcC-C-Cccc-ccCCCccccccceecc
Confidence 45688898864432 4455566666553 22 347 9999998888875422 2 3335 7799999998765443
No 286
>TIGR03822 AblA_like_2 lysine-2,3-aminomutase-related protein. Members of this protein form a distinctive clade, homologous to lysine-2,3-aminomutase (of Bacillus, Clostridium, and methanogenic archaea) and likely similar in function. Members of this family are found in Rhodopseudomonas, Caulobacter crescentus, Bradyrhizobium, etc.
Probab=22.09 E-value=6.1e+02 Score=23.14 Aligned_cols=103 Identities=14% Similarity=0.051 Sum_probs=51.7
Q ss_pred chHHHHHHHHHHh-CCcEEecCCC---CCCHHHHHHHHHHhhhcCCcCCCCeEEeeccCCCCCCCCcHHHHHHHHHHhcC
Q 021264 29 GIVGNAVDVAIKA-GYRHIDCARL---YLNEKEIGFVLKKLFEDGVVKREDLWITSKLWCTDLAPKDVPEALDNTLQDLQ 104 (315)
Q Consensus 29 ~~~~~~l~~A~~~-Gi~~~DtA~~---Ygse~~lG~~l~~~~~~~~~~R~~~~i~tK~~~~~~~~~~i~~~ve~sL~~Lg 104 (315)
++..++++...+. ||+-+-.+.. -.+...+...++..-+.+ ....+.+.|+.. -..+..+...+-+.|++.|
T Consensus 122 ~e~~~~i~~i~~~~~I~~VilSGGDPl~~~~~~L~~ll~~l~~i~--~v~~iri~Tr~~--v~~p~rit~ell~~L~~~g 197 (321)
T TIGR03822 122 AELDAAFAYIADHPEIWEVILTGGDPLVLSPRRLGDIMARLAAID--HVKIVRFHTRVP--VADPARVTPALIAALKTSG 197 (321)
T ss_pred HHHHHHHHHHHhCCCccEEEEeCCCcccCCHHHHHHHHHHHHhCC--CccEEEEeCCCc--ccChhhcCHHHHHHHHHcC
Confidence 4455666655444 7765432211 113334444444431111 223456667652 2223444556666677766
Q ss_pred CCccceEeeecCCCccCCCCCCCCCCCCCCCHHHHHHHHHHHHhcCC
Q 021264 105 IDYVDLYLIHWPARMKKGSVGFNPENLLPLDIPSTWRAMEALYDSGK 151 (315)
Q Consensus 105 ~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~L~~lk~~Gk 151 (315)
.. ..+.+|..... .-.+++.++++.|++.|.
T Consensus 198 ~~--v~i~l~~~h~~--------------el~~~~~~ai~~L~~~Gi 228 (321)
T TIGR03822 198 KT--VYVALHANHAR--------------ELTAEARAACARLIDAGI 228 (321)
T ss_pred Cc--EEEEecCCChh--------------hcCHHHHHHHHHHHHcCC
Confidence 32 24666754321 113677888888888885
No 287
>TIGR03217 4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase. Members of this protein family are 4-hydroxy-2-oxovalerate aldolase, also called 4-hydroxy-2-ketovalerate aldolase and 2-oxo-4-hydroxypentanoate aldolase. This enzyme, part of the pathway for the meta-cleavage of catechol, produces pyruvate and acetaldehyde. Acetaldehyde is then converted by acetaldehyde dehydrogenase (acylating) (DmpF; EC 1.2.1.10) to acetyl-CoA. The two enzymes are tightly associated.
Probab=22.01 E-value=6.3e+02 Score=23.29 Aligned_cols=112 Identities=10% Similarity=0.095 Sum_probs=54.0
Q ss_pred CCCCCcHHHHHHHHHHhcCCCccceEeeecCCCccCCCCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeeEeecC-CChhh
Q 021264 86 DLAPKDVPEALDNTLQDLQIDYVDLYLIHWPARMKKGSVGFNPENLLPLDIPSTWRAMEALYDSGKARAIGVCN-FSTKK 164 (315)
Q Consensus 86 ~~~~~~i~~~ve~sL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~L~~lk~~GkIr~iGvS~-~~~~~ 164 (315)
.++.+ -+..+-+.|.+.|+++|.+-+.-... ..+....... .+..+.++.+.+....-++..+-+.. .+.+.
T Consensus 20 ~f~~~-~~~~ia~~Ld~aGV~~IEvg~g~gl~---g~s~~~G~~~---~~~~e~i~~~~~~~~~~~~~~ll~pg~~~~~d 92 (333)
T TIGR03217 20 QFTIE-QVRAIAAALDEAGVDAIEVTHGDGLG---GSSFNYGFSA---HTDLEYIEAAADVVKRAKVAVLLLPGIGTVHD 92 (333)
T ss_pred cCCHH-HHHHHHHHHHHcCCCEEEEecCCCCC---CccccCCCCC---CChHHHHHHHHHhCCCCEEEEEeccCccCHHH
Confidence 34443 45677788999999999987221100 0000000000 22333344443333333333222111 24556
Q ss_pred HHHHHHhcCCCCcccccc--cCcccchHHHHHHHHHcCceEEEec
Q 021264 165 LGDLLEIARVPPAVNQVE--CHSSWQQQKLHAFCKSKGVHLSGYS 207 (315)
Q Consensus 165 l~~~~~~~~~~~~~~q~~--~n~~~~~~~~~~~~~~~gi~v~~~~ 207 (315)
++.+.+. ++ +.+.+. .+-.+.-.+.+++++++|..+...-
T Consensus 93 l~~a~~~-gv--d~iri~~~~~e~d~~~~~i~~ak~~G~~v~~~l 134 (333)
T TIGR03217 93 LKAAYDA-GA--RTVRVATHCTEADVSEQHIGMARELGMDTVGFL 134 (333)
T ss_pred HHHHHHC-CC--CEEEEEeccchHHHHHHHHHHHHHcCCeEEEEE
Confidence 6665553 23 344433 3322233678889999998776543
No 288
>COG1217 TypA Predicted membrane GTPase involved in stress response [Signal transduction mechanisms]
Probab=21.99 E-value=5.6e+02 Score=25.21 Aligned_cols=41 Identities=15% Similarity=0.282 Sum_probs=32.6
Q ss_pred CCCeEEeeccCCCCCCCCcHHHHHHHHHHhcCC--CccceEee
Q 021264 73 REDLWITSKLWCTDLAPKDVPEALDNTLQDLQI--DYVDLYLI 113 (315)
Q Consensus 73 R~~~~i~tK~~~~~~~~~~i~~~ve~sL~~Lg~--d~iDl~~l 113 (315)
-..+++..|+..++..|+.+..++-..+-.||. |.+|+=.+
T Consensus 121 L~PIVVvNKiDrp~Arp~~Vvd~vfDLf~~L~A~deQLdFPiv 163 (603)
T COG1217 121 LKPIVVINKIDRPDARPDEVVDEVFDLFVELGATDEQLDFPIV 163 (603)
T ss_pred CCcEEEEeCCCCCCCCHHHHHHHHHHHHHHhCCChhhCCCcEE
Confidence 567999999988888899899999999999985 35665433
No 289
>cd03768 SR_ResInv Serine Recombinase (SR) family, Resolvase and Invertase subfamily, catalytic domain; members contain a C-terminal DNA binding domain. Serine recombinases catalyze site-specific recombination of DNA molecules by a concerted, four-strand cleavage and rejoining mechanism which involves a transient phosphoserine linkage between DNA and the enzyme. They are functionally versatile and include resolvases, invertases, integrases, and transposases. Resolvases and invertases affect resolution or inversion and comprise a major phylogenic group. Resolvases (e.g. Tn3, gamma-delta, and Tn5044) normally recombine two sites in direct repeat causing deletion of the DNA between the sites. Invertases (e.g. Gin and Hin) recombine sites in inverted repeat to invert the DNA between the sites. Cointegrate resolution with gamma-delta resolvase requires the formation of a synaptosome of three resolvase dimers bound to each of two res sites on the DNA. Also included in this subfamily are some
Probab=21.82 E-value=1.9e+02 Score=21.78 Aligned_cols=49 Identities=18% Similarity=0.218 Sum_probs=36.0
Q ss_pred HHHHHHHHHhcCCCccceEeeecCCCccCCCCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeeEee
Q 021264 93 PEALDNTLQDLQIDYVDLYLIHWPARMKKGSVGFNPENLLPLDIPSTWRAMEALYDSGKARAIGV 157 (315)
Q Consensus 93 ~~~ve~sL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~L~~lk~~GkIr~iGv 157 (315)
+..+.+.|+.+. ..|.+++++.++.. .+..+.+..++.+.+.| |+-+-+
T Consensus 42 R~~~~~ll~~~~--~~d~lvv~~~dRl~-------------R~~~e~~~~~~~l~~~g-i~l~~~ 90 (126)
T cd03768 42 RPELQKLLEDLR--EGDTLVVTKLDRLG-------------RSTKDLLEIVEELREKG-VSLRSL 90 (126)
T ss_pred CHHHHHHHHhCc--CCCEEEEEEcchhc-------------CcHHHHHHHHHHHHHCC-CEEEEe
Confidence 566777777776 68999999998864 45678888888888876 444433
No 290
>PRK09140 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; Reviewed
Probab=21.75 E-value=3.8e+02 Score=22.77 Aligned_cols=25 Identities=16% Similarity=0.348 Sum_probs=16.9
Q ss_pred HHHHhhcCCeeecCCCCHHHHHHhh
Q 021264 243 LRWGLQMGHSVLPKSTNEARIKENF 267 (315)
Q Consensus 243 l~~~l~~~~~~i~G~~~~~~l~~nl 267 (315)
+++....+..+++|+.+++++.+..
T Consensus 97 ~~~~~~~~~~~~~G~~t~~E~~~A~ 121 (206)
T PRK09140 97 IRRAVALGMVVMPGVATPTEAFAAL 121 (206)
T ss_pred HHHHHHCCCcEEcccCCHHHHHHHH
Confidence 3444455677778888888777765
No 291
>TIGR01285 nifN nitrogenase molybdenum-iron cofactor biosynthesis protein NifN. This protein forms a complex with NifE, and appears as a NifEN in some species. NifEN is a required for producing the molybdenum-iron cofactor of molybdenum-requiring nitrogenases. NifN is closely related to the nitrogenase molybdenum-iron protein beta chain NifK. This model describes most examples of NifN but excludes some cases, such as the putative NifN of Chlorobium tepidum, for which a separate model may be created.
Probab=21.69 E-value=5.5e+02 Score=24.60 Aligned_cols=113 Identities=10% Similarity=0.074 Sum_probs=59.2
Q ss_pred CCCCHHHHHHHHHHhhhcCCcCCCCeEEeeccCCCCCCCCcHHHHHHHHHHhcC-CCccceEeeecCCCccCCCCCCCCC
Q 021264 51 LYLNEKEIGFVLKKLFEDGVVKREDLWITSKLWCTDLAPKDVPEALDNTLQDLQ-IDYVDLYLIHWPARMKKGSVGFNPE 129 (315)
Q Consensus 51 ~Ygse~~lG~~l~~~~~~~~~~R~~~~i~tK~~~~~~~~~~i~~~ve~sL~~Lg-~d~iDl~~lH~p~~~~~~~~~~~~~ 129 (315)
.||.++.|-++|++..+.. +++=++|.|-+ ....--+.+..-+.+.-++.- ..-+.++.++.|+......
T Consensus 72 VfGg~~~L~~~I~~~~~~~--~P~~I~V~ttC-~~eiIGDDi~~v~~~~~~e~p~~~~~pvi~v~tpgf~g~~~------ 142 (432)
T TIGR01285 72 ILGGDEHIEEAIDTLCQRN--KPKAIGLLSTG-LTETRGEDIARVVRQFREKHPQHKGTAVVTVNTPDFKGSLE------ 142 (432)
T ss_pred EECcHHHHHHHHHHHHHhc--CCCEEEEeCCC-cccccccCHHHHHHHHHhhcccccCCeEEEecCCCcCCchH------
Confidence 4788888888888775543 44556666554 233333444444444322210 0136788888887652110
Q ss_pred CCCCCCHHHHHHHHH-HHH--------hcCCeeeEeecCCC---hhhHHHHHHhcCCCC
Q 021264 130 NLLPLDIPSTWRAME-ALY--------DSGKARAIGVCNFS---TKKLGDLLEIARVPP 176 (315)
Q Consensus 130 ~~~~~~~~~~~~~L~-~lk--------~~GkIr~iGvS~~~---~~~l~~~~~~~~~~~ 176 (315)
......+++|- .+. +.++|--||-++.. .+.+.++++..++.+
T Consensus 143 ----~G~~~a~~al~~~~~~~~~~~~~~~~~VNiig~~~~~~~d~~elk~lL~~~Gl~~ 197 (432)
T TIGR01285 143 ----DGYAAAVESIIEAWVPPAPARAQRNRRVNLLVGSLLTPGDIEELRRMVEAFGLKP 197 (432)
T ss_pred ----HHHHHHHHHHHHHHcccccccCCCCCeEEEEcCCCCCccCHHHHHHHHHHcCCce
Confidence 22333444432 222 24567777866554 345556666655543
No 292
>PRK00730 rnpA ribonuclease P; Reviewed
Probab=21.64 E-value=3.1e+02 Score=21.86 Aligned_cols=63 Identities=3% Similarity=-0.017 Sum_probs=43.9
Q ss_pred CCCCeEEeeccCCCCCCCCcHHHHHHHHHHhcC--CCccceEeeecCCCccCCCCCCCCCCCCCCCHHHHHHHHHHHHhc
Q 021264 72 KREDLWITSKLWCTDLAPKDVPEALDNTLQDLQ--IDYVDLYLIHWPARMKKGSVGFNPENLLPLDIPSTWRAMEALYDS 149 (315)
Q Consensus 72 ~R~~~~i~tK~~~~~~~~~~i~~~ve~sL~~Lg--~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~L~~lk~~ 149 (315)
+|=.+.|+-|++. --..+.+++.+.++++... ....|++++..+... .+..++...|..+..+
T Consensus 46 ~RlG~sVSKKvg~-AV~RNRiKR~lREafR~~~~~l~g~DiVviaR~~~~--------------~~f~~L~~~l~~~~~~ 110 (138)
T PRK00730 46 CKVGITVSKKFGK-AHQRNRFKRIVREAFRHVRHNLPGCQIVVSPKGNSQ--------------PDFLKLLQDFLQQIPE 110 (138)
T ss_pred ceEEEEEeccccc-chhHHHHHHHHHHHHHHhhcccCCceEEEEeccccC--------------CCHHHHHHHHHHHHHH
Confidence 4667888888764 4456778888888888764 346899999876542 4566666666666554
No 293
>PLN02775 Probable dihydrodipicolinate reductase
Probab=21.62 E-value=3.9e+02 Score=24.18 Aligned_cols=60 Identities=13% Similarity=0.168 Sum_probs=46.4
Q ss_pred HHHHHHHHhcCCCccceEeeecCCCccCCCCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeeEeecCCChhhHHHHHHh
Q 021264 94 EALDNTLQDLQIDYVDLYLIHWPARMKKGSVGFNPENLLPLDIPSTWRAMEALYDSGKARAIGVCNFSTKKLGDLLEI 171 (315)
Q Consensus 94 ~~ve~sL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~L~~lk~~GkIr~iGvS~~~~~~l~~~~~~ 171 (315)
..+++.|..+.-++.|++.+.. ..++.+.+.++.+.+.|+--=+|.+.++.+++.++.+.
T Consensus 66 ~dl~~~l~~~~~~~~~~VvIDF------------------T~P~a~~~~~~~~~~~g~~~VvGTTG~~~e~l~~~~~~ 125 (286)
T PLN02775 66 SEREAVLSSVKAEYPNLIVVDY------------------TLPDAVNDNAELYCKNGLPFVMGTTGGDRDRLLKDVEE 125 (286)
T ss_pred ccHHHHHHHhhccCCCEEEEEC------------------CChHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHhc
Confidence 4455666666556799777753 34567889999999999988899999999988877664
No 294
>PRK14476 nitrogenase molybdenum-cofactor biosynthesis protein NifN; Provisional
Probab=21.50 E-value=4.6e+02 Score=25.37 Aligned_cols=112 Identities=10% Similarity=0.095 Sum_probs=57.5
Q ss_pred CCCCHHHHHHHHHHhhhcCCcCCCCeEEeeccCCCCCCCCcHHHHHHHHHHhcC-CCccceEeeecCCCccCCCCCCCCC
Q 021264 51 LYLNEKEIGFVLKKLFEDGVVKREDLWITSKLWCTDLAPKDVPEALDNTLQDLQ-IDYVDLYLIHWPARMKKGSVGFNPE 129 (315)
Q Consensus 51 ~Ygse~~lG~~l~~~~~~~~~~R~~~~i~tK~~~~~~~~~~i~~~ve~sL~~Lg-~d~iDl~~lH~p~~~~~~~~~~~~~ 129 (315)
.||.++.|-++|++..++. +++-++|.|-. ....--+.+..-+++.-++.. ..-+.++.++.|+......
T Consensus 73 VfGg~~~L~~aI~~~~~~~--~P~~I~V~ttC-~~eiIGDDi~~v~~~~~~~~p~~~~~pvi~v~tpgF~g~~~------ 143 (455)
T PRK14476 73 ILGGDENVEEAILNICKKA--KPKIIGLCTTG-LTETRGDDVAGALKEIRARHPELADTPIVYVSTPDFKGALE------ 143 (455)
T ss_pred EeCCHHHHHHHHHHHHHhh--CCCEEEEeCcc-hHhhhhccHHHHHHHHHhhccccCCCeEEEecCCCCCCcHH------
Confidence 4788888888888875443 34445555544 222223334444443333321 1136788888887642110
Q ss_pred CCCCCCHHHHHHHHHH-HH--------hcCCeeeEeecCCC---hhhHHHHHHhcCCC
Q 021264 130 NLLPLDIPSTWRAMEA-LY--------DSGKARAIGVCNFS---TKKLGDLLEIARVP 175 (315)
Q Consensus 130 ~~~~~~~~~~~~~L~~-lk--------~~GkIr~iGvS~~~---~~~l~~~~~~~~~~ 175 (315)
...+..+++|.+ +. ++++|--||-+++. .+.+.++++..++.
T Consensus 144 ----~G~~~a~~al~~~~~~~~~~~~~~~~~VNiIgg~~~~~~D~~elk~lL~~~Gl~ 197 (455)
T PRK14476 144 ----DGWAAAVEAIVEALVPPASSTGRRPRQVNVLPGSHLTPGDIEELREIIEAFGLE 197 (455)
T ss_pred ----HHHHHHHHHHHHHhcccccCCCCCCCcEEEECCCCCCcccHHHHHHHHHHcCCc
Confidence 122333333322 21 34568888755443 34555666655543
No 295
>PLN02321 2-isopropylmalate synthase
Probab=21.42 E-value=4.5e+02 Score=26.77 Aligned_cols=100 Identities=15% Similarity=0.248 Sum_probs=54.1
Q ss_pred HHHHHHHHHHhcCCCccceEeeecCCCccCCCCCCCCCCCCCCCHHHHHHHHHHHHhc--------CC-eeeEeecCCCh
Q 021264 92 VPEALDNTLQDLQIDYVDLYLIHWPARMKKGSVGFNPENLLPLDIPSTWRAMEALYDS--------GK-ARAIGVCNFST 162 (315)
Q Consensus 92 i~~~ve~sL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~L~~lk~~--------Gk-Ir~iGvS~~~~ 162 (315)
-+-.+-+.|.++|+++|..- +|... ... +++++.+.+. +. ..-.+++-...
T Consensus 109 eKl~Ia~~L~~lGVd~IEvG---fP~~S--------------p~D---~e~vr~i~~~~~~~v~~~~~v~~i~a~~ra~~ 168 (632)
T PLN02321 109 EKLDIARQLAKLGVDIIEAG---FPIAS--------------PDD---LEAVKTIAKEVGNEVDEDGYVPVICGLSRCNK 168 (632)
T ss_pred HHHHHHHHHHHcCCCEEEEe---CcCCC--------------ccH---HHHHHHHHHhcccCCCccccceeeeeehhccH
Confidence 45677788999999999885 33221 111 3334444332 11 22334555556
Q ss_pred hhHHHHHHhcC-C--CCcccccccCcccch--------------HHHHHHHHHcCceEEEecCCCC
Q 021264 163 KKLGDLLEIAR-V--PPAVNQVECHSSWQQ--------------QKLHAFCKSKGVHLSGYSPLGS 211 (315)
Q Consensus 163 ~~l~~~~~~~~-~--~~~~~q~~~n~~~~~--------------~~~~~~~~~~gi~v~~~~pl~~ 211 (315)
..++.+++... . +-..+.+..+..+.. .+.+++|+++|...+.+++-..
T Consensus 169 ~dId~A~~al~~a~~~~I~i~~stSd~h~~~~l~~t~ee~l~~~~~~V~~Ak~~G~~~v~fs~EDa 234 (632)
T PLN02321 169 KDIDAAWEAVKHAKRPRIHTFIATSEIHMEHKLRKTPDEVVEIARDMVKYARSLGCEDVEFSPEDA 234 (632)
T ss_pred HhHHHHHHHhcCCCCCEEEEEEcCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCceEEEecccC
Confidence 67777666421 1 112233333333321 4578899999886677777543
No 296
>TIGR01428 HAD_type_II 2-haloalkanoic acid dehalogenase, type II. Note that the Type I HAD enzymes have not yet been fully characterized, but clearly utilize a substantially different catalytic mechanism and are thus unlikely to be related.
Probab=21.36 E-value=1.6e+02 Score=24.30 Aligned_cols=37 Identities=27% Similarity=0.219 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHhcCCeeeEeecCCChhhHHHHHHhcC
Q 021264 136 IPSTWRAMEALYDSGKARAIGVCNFSTKKLGDLLEIAR 173 (315)
Q Consensus 136 ~~~~~~~L~~lk~~GkIr~iGvS~~~~~~l~~~~~~~~ 173 (315)
..++.+.|+.|++.|. +-.-+||.+...+...++..+
T Consensus 94 ~~~~~~~L~~L~~~g~-~~~i~Sn~~~~~~~~~l~~~g 130 (198)
T TIGR01428 94 HPDVPAGLRALKERGY-RLAILSNGSPAMLKSLVKHAG 130 (198)
T ss_pred CCCHHHHHHHHHHCCC-eEEEEeCCCHHHHHHHHHHCC
Confidence 4577889999999884 445577777676666666543
No 297
>PF13407 Peripla_BP_4: Periplasmic binding protein domain; PDB: 3BRS_B 3GBP_A 3GA5_A 1GCG_A 1GCA_A 3H75_A 3D02_A 3L49_B 3EJW_B 3T95_A ....
Probab=21.32 E-value=5.1e+02 Score=21.93 Aligned_cols=53 Identities=17% Similarity=0.239 Sum_probs=32.0
Q ss_pred cHHHHHHHHHHhcCCCccceEeeecCCCccCCCCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeeEeecCCChh
Q 021264 91 DVPEALDNTLQDLQIDYVDLYLIHWPARMKKGSVGFNPENLLPLDIPSTWRAMEALYDSGKARAIGVCNFSTK 163 (315)
Q Consensus 91 ~i~~~ve~sL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~L~~lk~~GkIr~iGvS~~~~~ 163 (315)
.+.+.+++.++.+|.+ +.++ .+.. .+.....+.++.+.++| +..|=++..++.
T Consensus 15 ~~~~g~~~~a~~~g~~-~~~~---~~~~---------------~d~~~q~~~i~~~i~~~-~d~Iiv~~~~~~ 67 (257)
T PF13407_consen 15 QVIKGAKAAAKELGYE-VEIV---FDAQ---------------NDPEEQIEQIEQAISQG-VDGIIVSPVDPD 67 (257)
T ss_dssp HHHHHHHHHHHHHTCE-EEEE---EEST---------------TTHHHHHHHHHHHHHTT-ESEEEEESSSTT
T ss_pred HHHHHHHHHHHHcCCE-EEEe---CCCC---------------CCHHHHHHHHHHHHHhc-CCEEEecCCCHH
Confidence 4667777778887743 2222 1111 34566777788877776 777766665543
No 298
>PRK09490 metH B12-dependent methionine synthase; Provisional
Probab=21.29 E-value=1.2e+03 Score=26.09 Aligned_cols=214 Identities=14% Similarity=0.106 Sum_probs=111.0
Q ss_pred CcchHHHHHHHHHHhCCcEEecCCCCCC---------H----HHHHHHH---HHhhhcC--CcCCCCeEEeeccCCCC--
Q 021264 27 DPGIVGNAVDVAIKAGYRHIDCARLYLN---------E----KEIGFVL---KKLFEDG--VVKREDLWITSKLWCTD-- 86 (315)
Q Consensus 27 ~~~~~~~~l~~A~~~Gi~~~DtA~~Ygs---------e----~~lG~~l---~~~~~~~--~~~R~~~~i~tK~~~~~-- 86 (315)
.++.+.++=+..+++|-+.+.|....++ + ++.-.+. ++...+. .-+..+.||+.-+|+..
T Consensus 63 ~Pe~I~~IH~~Yl~AGADII~TNTF~a~~~~L~~ygl~~~~~eln~~av~LAreAa~~~~~~~~~~~~~VAGSIGP~g~~ 142 (1229)
T PRK09490 63 QPDVIEAIHRAYLEAGADIIETNTFNATTIAQADYGMESLVYELNFAAARLAREAADEWTAKTPDKPRFVAGVLGPTNRT 142 (1229)
T ss_pred CHHHHHHHHHHHHHHhCceeecCCCCCCHHHHhhCChHHHHHHHHHHHHHHHHHHHHHhhhccCCCceEEEEecCCCCcc
Confidence 3444555555668999999999866332 1 1111111 1111100 00123588988887643
Q ss_pred --------------CCCCcHHHHHHHHHHhcCCCccceEeeecCCCccCCCCCCCCCCCCCCCHHHHHHHHHHHH-hcC-
Q 021264 87 --------------LAPKDVPEALDNTLQDLQIDYVDLYLIHWPARMKKGSVGFNPENLLPLDIPSTWRAMEALY-DSG- 150 (315)
Q Consensus 87 --------------~~~~~i~~~ve~sL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~L~~lk-~~G- 150 (315)
.+.+.+.....+..+.|--.-+|++++-..... .....++.+++++. +.|
T Consensus 143 ~sl~p~~e~pg~~~it~del~~~y~eQi~~L~e~GVDllliETi~d~--------------~EakAal~a~~~~~~~~~~ 208 (1229)
T PRK09490 143 ASISPDVNDPGFRNVTFDELVAAYREQTRGLIEGGADLILIETIFDT--------------LNAKAAIFAVEEVFEELGV 208 (1229)
T ss_pred cccCCCcccccccCCCHHHHHHHHHHHHHHHHhCCCCEEEEeeeCCH--------------HHHHHHHHHHHHHHhhcCC
Confidence 123567777777777775566999999764221 11223344444432 222
Q ss_pred -CeeeEeecCCC-------hhhHHHHHHhc-CCCCcccccccCc-ccchHHHHHHHH-HcCceEEEecCCCCCCCCCCcc
Q 021264 151 -KARAIGVCNFS-------TKKLGDLLEIA-RVPPAVNQVECHS-SWQQQKLHAFCK-SKGVHLSGYSPLGSPGTRWIKS 219 (315)
Q Consensus 151 -kIr~iGvS~~~-------~~~l~~~~~~~-~~~~~~~q~~~n~-~~~~~~~~~~~~-~~gi~v~~~~pl~~gg~~~~~~ 219 (315)
+=-.+.++..+ ...++.++... ...++++-+++.. ...-.+.++... ..+..+.+| |-+ |+-.
T Consensus 209 ~lPv~vS~T~~d~~Gr~lsG~~~ea~~~~l~~~~~~avGlNCs~GP~~m~~~l~~l~~~~~~pi~vy-PNA--GlP~--- 282 (1229)
T PRK09490 209 RLPVMISGTITDASGRTLSGQTTEAFWNSLRHAKPLSIGLNCALGADELRPYVEELSRIADTYVSAH-PNA--GLPN--- 282 (1229)
T ss_pred CCeEEEEEEEECCCCccCCCCcHHHHHHHHhcCCCCEEEEcCCCcHHHHHHHHHHHHHhcCCeEEEE-eCC--CCCC---
Confidence 32233333211 13344444322 2456677777763 222234444443 336777766 443 3211
Q ss_pred ccCCchHHHHHHHHhCCCH---HHHHHHHHhhcC-CeeecCC--CCHHHHHHhhcccC
Q 021264 220 DVLRHPVLKTAAEKLGKTP---AQVALRWGLQMG-HSVLPKS--TNEARIKENFDIFD 271 (315)
Q Consensus 220 ~~~~~~~l~~la~~~~~s~---aq~al~~~l~~~-~~~i~G~--~~~~~l~~nl~a~~ 271 (315)
... .|..+| ++.+-.|+.. + +.+|=|| ++|+|++...+++.
T Consensus 283 -~~~---------~yd~tPe~~a~~~~~~~~~-G~v~IIGGCCGTtPeHI~ala~~l~ 329 (1229)
T PRK09490 283 -AFG---------EYDETPEEMAAQIGEFAES-GFLNIVGGCCGTTPEHIAAIAEAVA 329 (1229)
T ss_pred -CCC---------CCCCCHHHHHHHHHHHHHc-CCCCEEEecCCCCHHHHHHHHHHHh
Confidence 000 244454 4455666653 5 6666566 99999999887665
No 299
>PF01248 Ribosomal_L7Ae: Ribosomal protein L7Ae/L30e/S12e/Gadd45 family; InterPro: IPR004038 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This family includes: Ribosomal L7A from metazoa, Ribosomal L8-A and L8-B from fungi, 30S ribosomal protein HS6 from archaebacteria, 40S ribosomal protein S12 from eukaryotes, ribosomal protein L30 from eukaryotes and archaebacteria, Gadd45 and MyD118 [].; PDB: 2CZW_A 3V7E_B 2QEX_F 1YJ9_F 1VQ8_F 1YJN_F 3I56_F 1VQ6_F 2OTJ_F 1YIJ_F ....
Probab=21.26 E-value=2.7e+02 Score=19.98 Aligned_cols=64 Identities=14% Similarity=0.269 Sum_probs=38.8
Q ss_pred HHHHHHHHHHhcCCeeeEeecCCChhhHHHHHHhcCCCCcccccccCcccchHHHHHHHHHcCceEEEec
Q 021264 138 STWRAMEALYDSGKARAIGVCNFSTKKLGDLLEIARVPPAVNQVECHSSWQQQKLHAFCKSKGVHLSGYS 207 (315)
Q Consensus 138 ~~~~~L~~lk~~GkIr~iGvS~~~~~~l~~~~~~~~~~~~~~q~~~n~~~~~~~~~~~~~~~gi~v~~~~ 207 (315)
.+...|...++.|++. +| ..+..+.+......+.++--+.++.....-+..+|++++|+++-..
T Consensus 2 ~i~~~l~~a~~~~~lv-~G-----~~~v~k~l~~~~~~lvilA~d~~~~~~~~~l~~~c~~~~Ip~~~~~ 65 (95)
T PF01248_consen 2 KIYKLLKLARKAGRLV-KG-----IKEVLKALKKGKAKLVILAEDCSPDSIKKHLPALCEEKNIPYVFVP 65 (95)
T ss_dssp HHHHHHHHHHHHSEEE-ES-----HHHHHHHHHTTCESEEEEETTSSSGHHHHHHHHHHHHTTEEEEEES
T ss_pred hHHHHHHHHHhcCCEE-Ec-----hHHHHHHHHcCCCcEEEEcCCCChhhhcccchhheeccceeEEEEC
Confidence 3456677777777753 44 4456666666555444444444433322337789999999996643
No 300
>PRK10528 multifunctional acyl-CoA thioesterase I and protease I and lysophospholipase L1; Provisional
Probab=21.10 E-value=3.7e+02 Score=22.12 Aligned_cols=61 Identities=5% Similarity=-0.059 Sum_probs=38.6
Q ss_pred HHhcCCeeeEeecCCChhhHHH----HHHhcCCCCcccccccCcccch----------HHHHHHHHHcCceEEEe
Q 021264 146 LYDSGKARAIGVCNFSTKKLGD----LLEIARVPPAVNQVECHSSWQQ----------QKLHAFCKSKGVHLSGY 206 (315)
Q Consensus 146 lk~~GkIr~iGvS~~~~~~l~~----~~~~~~~~~~~~q~~~n~~~~~----------~~~~~~~~~~gi~v~~~ 206 (315)
+.....|...|++..+...+.. .+.....+.+++++-.|-..+. ..+++.++.++..++..
T Consensus 40 l~~~~~v~N~Gi~G~tt~~~~~rl~~~l~~~~pd~Vii~~GtND~~~~~~~~~~~~~l~~li~~~~~~~~~~ill 114 (191)
T PRK10528 40 WQSKTSVVNASISGDTSQQGLARLPALLKQHQPRWVLVELGGNDGLRGFPPQQTEQTLRQIIQDVKAANAQPLLM 114 (191)
T ss_pred HhhCCCEEecCcCcccHHHHHHHHHHHHHhcCCCEEEEEeccCcCccCCCHHHHHHHHHHHHHHHHHcCCCEEEE
Confidence 3445679999999988765432 2222234455666666665431 46888888888776655
No 301
>PRK00499 rnpA ribonuclease P; Reviewed
Probab=21.02 E-value=3.8e+02 Score=20.30 Aligned_cols=64 Identities=11% Similarity=0.156 Sum_probs=44.5
Q ss_pred CCCCeEEeeccCCCCCCCCcHHHHHHHHHHhcCC---CccceEeeecCCCccCCCCCCCCCCCCCCCHHHHHHHHHHHHh
Q 021264 72 KREDLWITSKLWCTDLAPKDVPEALDNTLQDLQI---DYVDLYLIHWPARMKKGSVGFNPENLLPLDIPSTWRAMEALYD 148 (315)
Q Consensus 72 ~R~~~~i~tK~~~~~~~~~~i~~~ve~sL~~Lg~---d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~L~~lk~ 148 (315)
+|=.+.|+-|++. --....+++.+.+.++.... ...|++++-.+.... .+..++-+.|..|.+
T Consensus 38 ~R~GisVsKKvgk-AV~RNriKR~lRE~~R~~~~~~~~~~d~v~i~r~~~~~-------------~~~~~l~~~l~~ll~ 103 (114)
T PRK00499 38 FRVGISVSKKVGN-AVVRNRIKRLIRESFRELKDEIKKGYDFVVIARKPAAE-------------LDYKEIKKSLIHVLK 103 (114)
T ss_pred cEEEEEEecccCc-hhhHhHHHHHHHHHHHHhhhcccCCceEEEEECCCccc-------------CCHHHHHHHHHHHHH
Confidence 4666777777765 55677888888888887643 357999888776532 566777777777655
Q ss_pred c
Q 021264 149 S 149 (315)
Q Consensus 149 ~ 149 (315)
.
T Consensus 104 k 104 (114)
T PRK00499 104 L 104 (114)
T ss_pred H
Confidence 4
No 302
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=21.00 E-value=1.3e+02 Score=26.72 Aligned_cols=50 Identities=14% Similarity=0.118 Sum_probs=37.4
Q ss_pred CccceEeeecCCCccCCCCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeeEeecCCChhhHHHH
Q 021264 106 DYVDLYLIHWPARMKKGSVGFNPENLLPLDIPSTWRAMEALYDSGKARAIGVCNFSTKKLGDL 168 (315)
Q Consensus 106 d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~L~~lk~~GkIr~iGvS~~~~~~l~~~ 168 (315)
...|+++|..|....+. ....++++.|.+|+++|+ .|=+.+|+...+.+.
T Consensus 156 ~~p~lllLDEP~~gvD~-----------~~~~~i~~lL~~l~~eg~--tIl~vtHDL~~v~~~ 205 (254)
T COG1121 156 QNPDLLLLDEPFTGVDV-----------AGQKEIYDLLKELRQEGK--TVLMVTHDLGLVMAY 205 (254)
T ss_pred cCCCEEEecCCcccCCH-----------HHHHHHHHHHHHHHHCCC--EEEEEeCCcHHhHhh
Confidence 35789999988775332 345688999999999988 577788887766544
No 303
>PRK06552 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=20.95 E-value=2.8e+02 Score=23.84 Aligned_cols=66 Identities=14% Similarity=0.094 Sum_probs=0.0
Q ss_pred CCCHHHHHHHHHHHHhcCCee---eEeecCC-ChhhHHHHHHhcCCCCcccccccCcccchHHHHHHHHHcCceEEE
Q 021264 133 PLDIPSTWRAMEALYDSGKAR---AIGVCNF-STKKLGDLLEIARVPPAVNQVECHSSWQQQKLHAFCKSKGVHLSG 205 (315)
Q Consensus 133 ~~~~~~~~~~L~~lk~~GkIr---~iGvS~~-~~~~l~~~~~~~~~~~~~~q~~~n~~~~~~~~~~~~~~~gi~v~~ 205 (315)
...-...++.+++++++-.-+ .||..+. +.++++++++ .-.|+-.++... .+++++|+++|+.+++
T Consensus 45 t~~~~~a~~~i~~l~~~~~~~p~~~vGaGTV~~~~~~~~a~~------aGA~FivsP~~~-~~v~~~~~~~~i~~iP 114 (213)
T PRK06552 45 TYTNPFASEVIKELVELYKDDPEVLIGAGTVLDAVTARLAIL------AGAQFIVSPSFN-RETAKICNLYQIPYLP 114 (213)
T ss_pred ECCCccHHHHHHHHHHHcCCCCCeEEeeeeCCCHHHHHHHHH------cCCCEEECCCCC-HHHHHHHHHcCCCEEC
No 304
>PRK02714 O-succinylbenzoate synthase; Provisional
Probab=20.94 E-value=4.8e+02 Score=23.73 Aligned_cols=68 Identities=12% Similarity=0.101 Sum_probs=40.0
Q ss_pred HHHHHHHHhcCCe-eeEeecCCChhhHHHHHHhcCCCCcccccccCcccchHHHHHHHHHcCceEEEecCC
Q 021264 140 WRAMEALYDSGKA-RAIGVCNFSTKKLGDLLEIARVPPAVNQVECHSSWQQQKLHAFCKSKGVHLSGYSPL 209 (315)
Q Consensus 140 ~~~L~~lk~~GkI-r~iGvS~~~~~~l~~~~~~~~~~~~~~q~~~n~~~~~~~~~~~~~~~gi~v~~~~pl 209 (315)
++.+.+|++.-.+ -..|=|-++...+..+++... .+++|+.....---.++.+.|+.+|+.++..+.+
T Consensus 206 ~~~~~~l~~~~~~Pia~DEs~~~~~d~~~~~~~~a--~d~v~ik~~k~GGi~~~~~~a~~~gi~~~~~~~~ 274 (320)
T PRK02714 206 FDEMLQLSQDYQTPIALDESVANLAQLQQCYQQGW--RGIFVIKPAIAGSPSRLRQFCQQHPLDAVFSSVF 274 (320)
T ss_pred HHHHHHHHHhCCCCEEECCccCCHHHHHHHHHcCC--CCEEEEcchhcCCHHHHHHHHHHhCCCEEEEech
Confidence 4556666554332 245556666666666665432 3556665554433356677788888888877554
No 305
>TIGR01459 HAD-SF-IIA-hyp4 HAD-superfamily class IIA hydrolase, TIGR01459. This hypothetical equivalog is a member of the Class IIA subfamily of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this equivalog are all gram negative and primarily alpha proteobacteria. Only one sequence hase been annotated as other than "hypothetical." That one, from Brucella, is annotated as related to NagD, but only by sequence similarity and should be treated with some skepticism. (See comments for Class IIA subfamily)
Probab=20.94 E-value=4.4e+02 Score=22.67 Aligned_cols=19 Identities=16% Similarity=0.352 Sum_probs=15.7
Q ss_pred CCHHHHHHHHHHHHhcCCe
Q 021264 134 LDIPSTWRAMEALYDSGKA 152 (315)
Q Consensus 134 ~~~~~~~~~L~~lk~~GkI 152 (315)
....++.++|++|+++|+-
T Consensus 24 ~~~pga~e~L~~L~~~G~~ 42 (242)
T TIGR01459 24 HTYPGAVQNLNKIIAQGKP 42 (242)
T ss_pred ccCccHHHHHHHHHHCCCE
Confidence 3467899999999999983
No 306
>TIGR03471 HpnJ hopanoid biosynthesis associated radical SAM protein HpnJ. One of the well-described hopanoid intermediates is bacteriohopanetetrol. In the conversion from hopene several reactions must occur in the side chain for which a radical mechanism might be reasonable. These include the four (presumably anaerobic) hydroxylations and a methyl shift.
Probab=20.93 E-value=7.6e+02 Score=23.80 Aligned_cols=123 Identities=11% Similarity=0.040 Sum_probs=0.0
Q ss_pred CCHHHHHHHHHHHHhcC-CeeeEeec----CCChhhHHHHHHhcCCCCcccccccCcccchHHHHHHHHHcCceEEEecC
Q 021264 134 LDIPSTWRAMEALYDSG-KARAIGVC----NFSTKKLGDLLEIARVPPAVNQVECHSSWQQQKLHAFCKSKGVHLSGYSP 208 (315)
Q Consensus 134 ~~~~~~~~~L~~lk~~G-kIr~iGvS----~~~~~~l~~~~~~~~~~~~~~q~~~n~~~~~~~~~~~~~~~gi~v~~~~p 208 (315)
.+.+.+++.++.+++.. .++.+-+. +.+...+.++++.....-.......... .+.++++..++.|+..+..+.
T Consensus 227 rs~e~V~~Ei~~~~~~~~~~~~i~f~Dd~f~~~~~~~~~l~~~l~~~~i~~~~~~~~~-~~~e~l~~l~~aG~~~v~iGi 305 (472)
T TIGR03471 227 RSAESVIEEVKYALENFPEVREFFFDDDTFTDDKPRAEEIARKLGPLGVTWSCNARAN-VDYETLKVMKENGLRLLLVGY 305 (472)
T ss_pred CCHHHHHHHHHHHHHhcCCCcEEEEeCCCCCCCHHHHHHHHHHHhhcCceEEEEecCC-CCHHHHHHHHHcCCCEEEEcC
Q ss_pred CCCCCCCCCccccCCchHHHHHHHHhCCCHHHHHHHHHhhcC----CeeecC--CCCHHHHHHhhc
Q 021264 209 LGSPGTRWIKSDVLRHPVLKTAAEKLGKTPAQVALRWGLQMG----HSVLPK--STNEARIKENFD 268 (315)
Q Consensus 209 l~~gg~~~~~~~~~~~~~l~~la~~~~~s~aq~al~~~l~~~----~~~i~G--~~~~~~l~~nl~ 268 (315)
=... .+.++.+.+.+...-..-+++++...+ ...|+| ..+.+.+++.++
T Consensus 306 ES~s-----------~~~L~~~~K~~~~~~~~~~i~~~~~~Gi~v~~~~IiGlPget~e~~~~ti~ 360 (472)
T TIGR03471 306 ESGD-----------QQILKNIKKGLTVEIARRFTRDCHKLGIKVHGTFILGLPGETRETIRKTID 360 (472)
T ss_pred CCCC-----------HHHHHHhcCCCCHHHHHHHHHHHHHCCCeEEEEEEEeCCCCCHHHHHHHHH
No 307
>TIGR03849 arch_ComA phosphosulfolactate synthase. This model finds the ComA (Coenzyme M biosynthesis A) protein, phosphosulfolactate synthase, in methanogenic archaea. The ComABC pathway is one of at least two pathways to the intermediate sulfopyruvate. Coenzyme M occurs rarely and sporadically outside of the archaea, as for expoxide metabolism in Xanthobacter autotrophicus Py2, but candidate phosphosulfolactate synthases from that and other species occur fall below the cutoff and outside the scope of this model. This model deliberately is narrower in scope than pfam02679.
Probab=20.87 E-value=5.4e+02 Score=22.62 Aligned_cols=97 Identities=15% Similarity=0.132 Sum_probs=57.1
Q ss_pred HHHHHHHHHhcCCCccceEeeecCCCccCCCCCCCCCCCCCCCHHHHHHHHH-HHHhcCCeeeEeecCCC-----hhhHH
Q 021264 93 PEALDNTLQDLQIDYVDLYLIHWPARMKKGSVGFNPENLLPLDIPSTWRAME-ALYDSGKARAIGVCNFS-----TKKLG 166 (315)
Q Consensus 93 ~~~ve~sL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~L~-~lk~~GkIr~iGvS~~~-----~~~l~ 166 (315)
.+.++..|+-.| +|||++=+-|-... ...++.++..- -+++-|.--+.| .++- ...++
T Consensus 11 ~~~~~d~Le~~g-~yID~lKfg~Gt~~--------------l~~~~~l~eki~la~~~~V~v~~G-Gtl~E~~~~q~~~~ 74 (237)
T TIGR03849 11 PKFVEDYLKVCG-DYITFVKFGWGTSA--------------LIDRDIVKEKIEMYKDYGIKVYPG-GTLFEIAHSKGKFD 74 (237)
T ss_pred HHHHHHHHHHhh-hheeeEEecCceEe--------------eccHHHHHHHHHHHHHcCCeEeCC-ccHHHHHHHhhhHH
Confidence 578889999998 89999998774433 33444554444 455566655666 2111 12223
Q ss_pred HHHHhc-CCCCcccccccCcccch----HHHHHHHHHcCceEEE
Q 021264 167 DLLEIA-RVPPAVNQVECHSSWQQ----QKLHAFCKSKGVHLSG 205 (315)
Q Consensus 167 ~~~~~~-~~~~~~~q~~~n~~~~~----~~~~~~~~~~gi~v~~ 205 (315)
+.++.+ ..-++++.++-..+.-. ..+++.++++|..+.+
T Consensus 75 ~Yl~~~k~lGf~~IEiS~G~~~i~~~~~~rlI~~~~~~g~~v~~ 118 (237)
T TIGR03849 75 EYLNECDELGFEAVEISDGSMEISLEERCNLIERAKDNGFMVLS 118 (237)
T ss_pred HHHHHHHHcCCCEEEEcCCccCCCHHHHHHHHHHHHhCCCeEec
Confidence 333332 23456666666544433 3577888888777664
No 308
>PRK14455 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=20.83 E-value=5.3e+02 Score=24.06 Aligned_cols=97 Identities=15% Similarity=0.153 Sum_probs=58.1
Q ss_pred EeeecCCCccCCCCCCCCCCCCCCCHHHHHHHHHHHHhcC-C---eeeEeecC--CChhhHHHHHHhcC-CCCccccccc
Q 021264 111 YLIHWPARMKKGSVGFNPENLLPLDIPSTWRAMEALYDSG-K---ARAIGVCN--FSTKKLGDLLEIAR-VPPAVNQVEC 183 (315)
Q Consensus 111 ~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~L~~lk~~G-k---Ir~iGvS~--~~~~~l~~~~~~~~-~~~~~~q~~~ 183 (315)
+-||.++........ +.+ ...+.++++++++.+.+.+ + |+++=+.. .+.++++++.+... .+..++-++|
T Consensus 223 iSL~a~~~e~r~~l~--pi~-~~~~l~~Il~~l~~~~~~~~~~v~iey~lI~gvNDs~ed~~~La~ll~~l~~~VnLIPy 299 (356)
T PRK14455 223 ISLHAPNNELRSSLM--PIN-RAYPLEKLMEAIEYYIEKTNRRVTFEYILLGGVNDQVEHAEELADLLKGIKCHVNLIPV 299 (356)
T ss_pred eccCCCCHHHHHHhc--Ccc-cCCCHHHHHHHHHHHHHhcCCeEEEEEEEeCCCCCCHHHHHHHHHHHhcCCCcEEEEec
Confidence 667877654321100 000 0145789999999887643 2 34554443 44577777776654 3456676777
Q ss_pred Ccccch----------HHHHHHHHHcCceEEEecCCC
Q 021264 184 HSSWQQ----------QKLHAFCKSKGVHLSGYSPLG 210 (315)
Q Consensus 184 n~~~~~----------~~~~~~~~~~gi~v~~~~pl~ 210 (315)
|+.... ..+.+.++++|+.+......+
T Consensus 300 np~~~~ky~~ps~e~l~~f~~~L~~~gi~v~ir~~~g 336 (356)
T PRK14455 300 NPVPERDYVRTPKEDIFAFEDTLKKNGVNCTIRREHG 336 (356)
T ss_pred CcCCCCCCcCCCHHHHHHHHHHHHHCCCcEEEeCCCC
Confidence 776421 345667888899988876663
No 309
>PRK15408 autoinducer 2-binding protein lsrB; Provisional
Probab=20.81 E-value=6.5e+02 Score=22.98 Aligned_cols=76 Identities=17% Similarity=0.155 Sum_probs=49.3
Q ss_pred CCCCeEEeeccCCCCCCCCcHHHHHHHHHHhcCCCccceEeeecCCCccCCCCCCCCCCCCCCCHHHHHHHHHHHHhcCC
Q 021264 72 KREDLWITSKLWCTDLAPKDVPEALDNTLQDLQIDYVDLYLIHWPARMKKGSVGFNPENLLPLDIPSTWRAMEALYDSGK 151 (315)
Q Consensus 72 ~R~~~~i~tK~~~~~~~~~~i~~~ve~sL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~L~~lk~~Gk 151 (315)
.++.+-++.|.....+ ...+.+.+++..+++| +++.+ ..|.. .+.....+.++.+..+|
T Consensus 22 ~~~~i~~v~k~~~~pf-~~~~~~Gi~~aa~~~G---~~v~~-~~~~~---------------~d~~~q~~~i~~li~~~- 80 (336)
T PRK15408 22 AAERIAFIPKLVGVGF-FTSGGNGAKEAGKELG---VDVTY-DGPTE---------------PSVSGQVQLINNFVNQG- 80 (336)
T ss_pred CCcEEEEEECCCCCHH-HHHHHHHHHHHHHHhC---CEEEE-ECCCC---------------CCHHHHHHHHHHHHHcC-
Confidence 4677888888743222 3467888999999998 44543 23332 23456678888888875
Q ss_pred eeeEeecCCChhhHHHH
Q 021264 152 ARAIGVCNFSTKKLGDL 168 (315)
Q Consensus 152 Ir~iGvS~~~~~~l~~~ 168 (315)
+..|-++..++..+...
T Consensus 81 vdgIiv~~~d~~al~~~ 97 (336)
T PRK15408 81 YNAIIVSAVSPDGLCPA 97 (336)
T ss_pred CCEEEEecCCHHHHHHH
Confidence 77888877665544333
No 310
>PF02679 ComA: (2R)-phospho-3-sulfolactate synthase (ComA); InterPro: IPR003830 Methanogenic archaea produce methane via the anaerobic reduction of acetate or single carbon compounds []. Coenzyme M (CoM; 2-mercaptoethanesulphonic acid) serves as the terminal methyl carrier for this process. Previously thought to be unique to methanogenic archaea, CoM has also been found in methylotrophic bacteria. Biosynthesis of CoM begins with the Michael addition of sulphite to phosphoenolpyruvate, forming 2-phospho-3-sulpholactate (PSL). This reaction is catalyzed by members of this family, PSL synthase (ComA) []. Subsequently, PSL is dephosphorylated by phosphosulpholactate phosphatase (ComB) to form 3-sulpholactate [], which is then converted to 3-sulphopyruvate by L-sulpholactate dehydrogenase (ComC; 1.1.1.272 from EC) []. Sulphopyruvate decarboxylase (ComDE; 4.1.1.79 from EC) converts 3-sulphopyruvate to sulphoacetaldehyde []. Reductive thiolation of sulphoacetaldehyde is the final step.; GO: 0019295 coenzyme M biosynthetic process; PDB: 1U83_A 1QWG_A.
Probab=20.72 E-value=5.7e+02 Score=22.54 Aligned_cols=98 Identities=16% Similarity=0.184 Sum_probs=50.6
Q ss_pred HHHHHHHHHhcCCCccceEeeecCCCccCCCCCCCCCCCCCCCHHHHH-HHHHHHHhcCCeeeEeecCCC----hhhHHH
Q 021264 93 PEALDNTLQDLQIDYVDLYLIHWPARMKKGSVGFNPENLLPLDIPSTW-RAMEALYDSGKARAIGVCNFS----TKKLGD 167 (315)
Q Consensus 93 ~~~ve~sL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~-~~L~~lk~~GkIr~iGvS~~~----~~~l~~ 167 (315)
...++..|+..| +|||++-+-|=... ....+++ +-++-+++-|.--+.|=.-+. ...+++
T Consensus 24 ~~~~~dlLe~ag-~yID~~K~g~Gt~~--------------l~~~~~l~eki~l~~~~gV~v~~GGtl~E~a~~q~~~~~ 88 (244)
T PF02679_consen 24 LRYLEDLLESAG-DYIDFLKFGWGTSA--------------LYPEEILKEKIDLAHSHGVYVYPGGTLFEVAYQQGKFDE 88 (244)
T ss_dssp HHHHHHHHHHHG-GG-SEEEE-TTGGG--------------GSTCHHHHHHHHHHHCTT-EEEE-HHHHHHHHHTT-HHH
T ss_pred HHHHHHHHHHhh-hhccEEEecCceee--------------ecCHHHHHHHHHHHHHcCCeEeCCcHHHHHHHhcChHHH
Confidence 578888999998 89999999875543 2334444 445555555665555522111 122333
Q ss_pred HHHhcC-CCCcccccccCcccch----HHHHHHHHHcCceEEE
Q 021264 168 LLEIAR-VPPAVNQVECHSSWQQ----QKLHAFCKSKGVHLSG 205 (315)
Q Consensus 168 ~~~~~~-~~~~~~q~~~n~~~~~----~~~~~~~~~~gi~v~~ 205 (315)
.++.+. .-|+.+.++-...... ..+++.+++.|..|++
T Consensus 89 yl~~~k~lGf~~IEiSdGti~l~~~~r~~~I~~~~~~Gf~v~~ 131 (244)
T PF02679_consen 89 YLEECKELGFDAIEISDGTIDLPEEERLRLIRKAKEEGFKVLS 131 (244)
T ss_dssp HHHHHHHCT-SEEEE--SSS---HHHHHHHHHHHCCTTSEEEE
T ss_pred HHHHHHHcCCCEEEecCCceeCCHHHHHHHHHHHHHCCCEEee
Confidence 333221 3456666665544433 3577777777777665
No 311
>COG0159 TrpA Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=20.69 E-value=6.2e+02 Score=22.66 Aligned_cols=52 Identities=25% Similarity=0.123 Sum_probs=30.1
Q ss_pred CCcccccccCcccch--HHHHHHHHHcCceEEEecCCCCCCCCCCccccCCchHHHHHHHHhCC
Q 021264 175 PPAVNQVECHSSWQQ--QKLHAFCKSKGVHLSGYSPLGSPGTRWIKSDVLRHPVLKTAAEKLGK 236 (315)
Q Consensus 175 ~~~~~q~~~n~~~~~--~~~~~~~~~~gi~v~~~~pl~~gg~~~~~~~~~~~~~l~~la~~~~~ 236 (315)
-|.+.+..||+..+. ...++.|++.|+.-+.---| +......+.+.++++|+
T Consensus 95 ~Pivlm~Y~Npi~~~Gie~F~~~~~~~GvdGlivpDL----------P~ee~~~~~~~~~~~gi 148 (265)
T COG0159 95 VPIVLMTYYNPIFNYGIEKFLRRAKEAGVDGLLVPDL----------PPEESDELLKAAEKHGI 148 (265)
T ss_pred CCEEEEEeccHHHHhhHHHHHHHHHHcCCCEEEeCCC----------ChHHHHHHHHHHHHcCC
Confidence 356677777776655 45677777776654333222 33334456666777764
No 312
>PRK14467 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=20.66 E-value=6.9e+02 Score=23.24 Aligned_cols=126 Identities=13% Similarity=0.095 Sum_probs=69.5
Q ss_pred CCCeEEeeccCC---------------CCCCCCcHHHHHHHHHHhcCCCccceEeeecCCCccCCCCCCCCCCCCCCCHH
Q 021264 73 REDLWITSKLWC---------------TDLAPKDVPEALDNTLQDLQIDYVDLYLIHWPARMKKGSVGFNPENLLPLDIP 137 (315)
Q Consensus 73 R~~~~i~tK~~~---------------~~~~~~~i~~~ve~sL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~ 137 (315)
|..+.|+|-+|+ .+.+.+.+..++....+.++.+.+.=+.+-...+.. ...+
T Consensus 98 ~~t~cvSsq~GC~l~C~FC~t~~~G~~rnlt~~EIv~Qv~~~~~~~~~~~v~~VvfmGmGEPL-------------~N~d 164 (348)
T PRK14467 98 HLTLCVSSQVGCAVGCKFCATAKDGLIRNLRTAEIIDQYIQVQKFLGENRIRNVVFMGMGEPL-------------ANYE 164 (348)
T ss_pred CcEEEEEcCCCCCCcCcCCCCCCCCCcCCCCHHHHHHHHHHHHHHhccCCCCeEEEEccChhh-------------cCHH
Confidence 566778877754 134456666676655554432222222222211111 4567
Q ss_pred HHHHHHHHHHh-cCC---eeeEeecCCChh-hHHHHHHhcC-CCCcccccccCcccch--------------HHHHHHHH
Q 021264 138 STWRAMEALYD-SGK---ARAIGVCNFSTK-KLGDLLEIAR-VPPAVNQVECHSSWQQ--------------QKLHAFCK 197 (315)
Q Consensus 138 ~~~~~L~~lk~-~Gk---Ir~iGvS~~~~~-~l~~~~~~~~-~~~~~~q~~~n~~~~~--------------~~~~~~~~ 197 (315)
.+.++++.+++ .|. -|++-||+.... .+.++..... ...+.. +.++..++. .++++.++
T Consensus 165 ~v~~~l~~l~~~~gl~~~~r~itvsT~G~~~~i~~l~~~~~l~~v~La-lSLha~~~e~r~~i~p~~~~~~l~~l~~~~~ 243 (348)
T PRK14467 165 NVRKAVQIMTSPWGLDLSKRRITISTSGIIHQIKRMAEDPVMPEVNLA-VSLNASSQKLRERIMPISKTNTLEELMEVLK 243 (348)
T ss_pred HHHHHHHHHcChhccCcCCCcEEEECCCChhHHHHHHhhccccCeeEE-EECCCCCHHHHHHhcCCccccCHHHHHHHHH
Confidence 88999999987 565 357888887633 4555443221 122222 555444332 33555554
Q ss_pred ----HcCceEEEecCCCCC
Q 021264 198 ----SKGVHLSGYSPLGSP 212 (315)
Q Consensus 198 ----~~gi~v~~~~pl~~g 212 (315)
+.|..++.--|+-.|
T Consensus 244 ~~~~~~g~~V~ieyvLIpG 262 (348)
T PRK14467 244 QYPLPPGRRIMLEYVLIKG 262 (348)
T ss_pred HHHHhcCCeEEEEEEEECC
Confidence 678888877777664
No 313
>TIGR01917 gly_red_sel_B glycine reductase, selenoprotein B. Glycine reductase is a complex with two selenoprotein subunits, A and B. This model represents the glycine reductase selenoprotein B. Closely related to it, but excluded from this model, are selenoprotein B subunits of betaine reductase and sarcosine reductase. All contain selenocysteine incorporated during translation at a specific UGA codon.
Probab=20.65 E-value=4.2e+02 Score=25.48 Aligned_cols=69 Identities=14% Similarity=0.116 Sum_probs=38.3
Q ss_pred HHHHHHHHhcCCee-----eEeecCCChhh---------HHHHHHhcCCCCccccc-ccCcccch-HHHHHHHHHcCceE
Q 021264 140 WRAMEALYDSGKAR-----AIGVCNFSTKK---------LGDLLEIARVPPAVNQV-ECHSSWQQ-QKLHAFCKSKGVHL 203 (315)
Q Consensus 140 ~~~L~~lk~~GkIr-----~iGvS~~~~~~---------l~~~~~~~~~~~~~~q~-~~n~~~~~-~~~~~~~~~~gi~v 203 (315)
++.|++|.++|+|+ ++|+....... +.+-+...+++ .++.+ .+--++|. .-+....++.||++
T Consensus 289 lD~LreLe~EG~IG~l~~~fy~t~G~gt~~~~a~~~g~eIa~~Lk~dgVD-AvILtstCgtCtrcga~m~keiE~~GIPv 367 (431)
T TIGR01917 289 VDVLRDLEKEGKIGELFKYFYSTTGNGTAVANSKQFAKEFSKELLAAGVD-AVILTSTUGTCTRCGATMVKEIERAGIPV 367 (431)
T ss_pred HHHHHHHHHcCCcccccCeeEEccCCCccHHHHHHHHHHHHHHHHHcCCC-EEEEcCCCCcchhHHHHHHHHHHHcCCCE
Confidence 68899999999997 55555443311 11111112222 22223 23334444 34667777788888
Q ss_pred EEecCC
Q 021264 204 SGYSPL 209 (315)
Q Consensus 204 ~~~~pl 209 (315)
+.+..+
T Consensus 368 V~i~~~ 373 (431)
T TIGR01917 368 VHICTV 373 (431)
T ss_pred EEEeec
Confidence 877665
No 314
>PF02581 TMP-TENI: Thiamine monophosphate synthase/TENI; InterPro: IPR003733 Thiamine monophosphate synthase (TMP) (2.5.1.3 from EC) catalyzes the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl)thiazole phosphate to yield thiamine phosphate in the thiamine biosynthesis pathway []. TENI, a protein from Bacillus subtilis that regulates the production of several extracellular enzymes by reducing alkaline protease production belongs to this group [].; GO: 0004789 thiamine-phosphate diphosphorylase activity, 0009228 thiamine biosynthetic process; PDB: 3NL5_A 3NL2_A 3NM1_A 3NM3_C 3NL6_B 3NL3_A 3CEU_A 3O63_B 3QH2_C 1YAD_D ....
Probab=20.63 E-value=1.7e+02 Score=24.14 Aligned_cols=51 Identities=12% Similarity=0.166 Sum_probs=32.0
Q ss_pred eEeecCCChhhHHHHHHhcCCCCcccccccCcccch-----------HHHHHHHHHcCceEEEecCC
Q 021264 154 AIGVCNFSTKKLGDLLEIARVPPAVNQVECHSSWQQ-----------QKLHAFCKSKGVHLSGYSPL 209 (315)
Q Consensus 154 ~iGvS~~~~~~l~~~~~~~~~~~~~~q~~~n~~~~~-----------~~~~~~~~~~gi~v~~~~pl 209 (315)
.||+|.|+.+++.++.+.. . ++ +-++++++. ..+.++++...++|++.+-+
T Consensus 97 ~ig~S~h~~~e~~~a~~~g-~--dY--v~~gpvf~T~sk~~~~~~g~~~l~~~~~~~~~pv~AlGGI 158 (180)
T PF02581_consen 97 IIGASCHSLEEAREAEELG-A--DY--VFLGPVFPTSSKPGAPPLGLDGLREIARASPIPVYALGGI 158 (180)
T ss_dssp EEEEEESSHHHHHHHHHCT-T--SE--EEEETSS--SSSSS-TTCHHHHHHHHHHHTSSCEEEESS-
T ss_pred EEEeecCcHHHHHHhhhcC-C--CE--EEECCccCCCCCccccccCHHHHHHHHHhCCCCEEEEcCC
Confidence 6999999999987776432 1 11 112222221 45777888888999987544
No 315
>TIGR00289 conserved hypothetical protein TIGR00289. Homologous proteins related to MJ0570 of Methanococcus jannaschii include both the apparent orthologs found by this model above the trusted cutoff, the much longer protein YLR143W from Saccharomyces cerevisiae, and second homologous proteins from Archaeoglobus fulgidus and Pyrococcus horikoshii that appear to represent a second orthologous group.
Probab=20.51 E-value=5.6e+02 Score=22.15 Aligned_cols=84 Identities=10% Similarity=0.155 Sum_probs=47.8
Q ss_pred HHHHHHHHHcCceEEEecCCCCCCCCCCccccCCchHHHHHHHHhC---------CCHHHHHHHHHhhcC-CeeecCCCC
Q 021264 190 QKLHAFCKSKGVHLSGYSPLGSPGTRWIKSDVLRHPVLKTAAEKLG---------KTPAQVALRWGLQMG-HSVLPKSTN 259 (315)
Q Consensus 190 ~~~~~~~~~~gi~v~~~~pl~~gg~~~~~~~~~~~~~l~~la~~~~---------~s~aq~al~~~l~~~-~~~i~G~~~ 259 (315)
.++.+..++.|+..++++.+... .....+..+|.+.| .++.++ +.++ ..+ .++|+.++.
T Consensus 75 ~~l~~~l~~~gv~~vv~GdI~s~---------~qr~~~e~vc~~~gl~~~~PLW~~d~~~l-~e~i-~~Gf~aiIv~v~~ 143 (222)
T TIGR00289 75 EDLAGQLGELDVEALCIGAIESN---------YQKSRIDKVCRELGLKSIAPLWHADPEKL-MYEV-AEKFEVIIVSVSA 143 (222)
T ss_pred HHHHHHHHHcCCCEEEECccccH---------HHHHHHHHHHHHcCCEEeccccCCCHHHH-HHHH-HcCCeEEEEEEcc
Confidence 44556666667766666555321 12234555666654 355555 4654 667 456665554
Q ss_pred HHHHHHhhcccCcccCHHHHHHHHhchh
Q 021264 260 EARIKENFDIFDWSISEDLFVKFSEIEQ 287 (315)
Q Consensus 260 ~~~l~~nl~a~~~~Lt~e~~~~l~~~~~ 287 (315)
. .|.+. -+...|+++.++.|.++.+
T Consensus 144 ~-gL~~~--~LGr~id~~~~~~L~~l~~ 168 (222)
T TIGR00289 144 M-GLDES--WLGRRIDKECIDDLKRLNE 168 (222)
T ss_pred C-CCChH--HcCCccCHHHHHHHHHHHh
Confidence 3 23322 2456799888888887655
No 316
>PF05049 IIGP: Interferon-inducible GTPase (IIGP); InterPro: IPR007743 Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence. IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing [].; GO: 0005525 GTP binding, 0016817 hydrolase activity, acting on acid anhydrides, 0016020 membrane; PDB: 1TPZ_A 1TQD_A 1TQ6_A 1TQ2_B 1TQ4_A.
Probab=20.46 E-value=1.3e+02 Score=28.31 Aligned_cols=101 Identities=15% Similarity=0.265 Sum_probs=53.2
Q ss_pred ccccCcCCcchHHHHHHHHHHhCCcEEe-----cCCCCC-CHHHHHHHHHHhhhcCCcCCCCeEEeeccCC---------
Q 021264 20 GLGTWQADPGIVGNAVDVAIKAGYRHID-----CARLYL-NEKEIGFVLKKLFEDGVVKREDLWITSKLWC--------- 84 (315)
Q Consensus 20 glG~~~~~~~~~~~~l~~A~~~Gi~~~D-----tA~~Yg-se~~lG~~l~~~~~~~~~~R~~~~i~tK~~~--------- 84 (315)
|.||..++.++ .++ +.+..-|| ++.-+. ++..|.+.+++. ..+=+||-||+..
T Consensus 95 G~gt~~f~~~~---Yl~---~~~~~~yD~fiii~s~rf~~ndv~La~~i~~~------gK~fyfVRTKvD~Dl~~~~~~~ 162 (376)
T PF05049_consen 95 GIGTPNFPPEE---YLK---EVKFYRYDFFIIISSERFTENDVQLAKEIQRM------GKKFYFVRTKVDSDLYNERRRK 162 (376)
T ss_dssp -GGGSS--HHH---HHH---HTTGGG-SEEEEEESSS--HHHHHHHHHHHHT------T-EEEEEE--HHHHHHHHHCC-
T ss_pred CCCCCCCCHHH---HHH---HccccccCEEEEEeCCCCchhhHHHHHHHHHc------CCcEEEEEecccccHhhhhccC
Confidence 66665444333 232 33555444 223333 466677888875 4666789999832
Q ss_pred -CCCCC----CcHHHHHHHHHHhcCCCccceEeeecCCCccCCCCCCCCCCCCCCCHHHHHHHHHH
Q 021264 85 -TDLAP----KDVPEALDNTLQDLQIDYVDLYLIHWPARMKKGSVGFNPENLLPLDIPSTWRAMEA 145 (315)
Q Consensus 85 -~~~~~----~~i~~~ve~sL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~L~~ 145 (315)
..++. +.+++.+.+.|++-|+...-+|++-+.+... .+.....++|+.
T Consensus 163 p~~f~~e~~L~~IR~~c~~~L~k~gv~~P~VFLVS~~dl~~-------------yDFp~L~~tL~~ 215 (376)
T PF05049_consen 163 PRTFNEEKLLQEIRENCLENLQKAGVSEPQVFLVSSFDLSK-------------YDFPKLEETLEK 215 (376)
T ss_dssp STT--HHTHHHHHHHHHHHHHHCTT-SS--EEEB-TTTTTS-------------TTHHHHHHHHHH
T ss_pred CcccCHHHHHHHHHHHHHHHHHHcCCCcCceEEEeCCCccc-------------CChHHHHHHHHH
Confidence 12222 3578888999999999989999997755432 556666666653
No 317
>PF00154 RecA: recA bacterial DNA recombination protein; InterPro: IPR013765 The recA gene product is a multifunctional enzyme that plays a role in homologous recombination, DNA repair and induction of the SOS response []. In homologous recombination, the protein functions as a DNA-dependent ATPase, promoting synapsis, heteroduplex formation and strand exchange between homologous DNAs []. RecA also acts as a protease cofactor that promotes autodigestion of the lexA product and phage repressors. The proteolytic inactivation of the lexA repressor by an activated form of recA may cause a derepression of the 20 or so genes involved in the SOS response, which regulates DNA repair, induced mutagenesis, delayed cell division and prophage induction in response to DNA damage []. RecA is a protein of about 350 amino-acid residues. Its sequence is very well conserved [, , ] among eubacterial species. It is also found in the chloroplast of plants []. RecA-like proteins are found in archaea and diverse eukaryotic organisms, like fission yeast, mouse or human. In the filament visualised by X-ray crystallography, beta-strand 3, the loop C-terminal to beta-strand 2, and alpha-helix D of the core domain form one surface that packs against alpha-helix A and beta-strand 0 (the N-terminal domain) of an adjacent monomer during polymerisation []. The core ATP-binding site domain is well conserved, with 14 invariant residues. It contains the nucleotide binding loop between beta-strand 1 and alpha-helix C. The Escherichia coli sequence GPESSGKT matches the consensus sequence of amino acids (G/A)XXXXGK(T/S) for the Walker A box (also referred to as the P-loop) found in a number of nucleoside triphosphate (NTP)-binding proteins. Another nucleotide binding motif, the Walker B box is found at beta-strand 4 in the RecA structure. The Walker B box is characterised by four hydrophobic amino acids followed by an acidic residue (usually aspartate). Nucleotide specificity and additional ATP binding interactions are contributed by the amino acid residues at beta-strand 2 and the loop C-terminal to that strand, all of which are greater than 90% conserved among bacterial RecA proteins.; GO: 0003697 single-stranded DNA binding, 0005524 ATP binding, 0006281 DNA repair; PDB: 2IN0_A 1MO3_A 3IFJ_A 2IN8_A 2IMZ_B 1G18_A 1MO4_A 3IGD_A 2L8L_A 2IN9_A ....
Probab=20.08 E-value=4.7e+02 Score=24.10 Aligned_cols=90 Identities=18% Similarity=0.106 Sum_probs=48.6
Q ss_pred HHHHhcCCCccceEeeecCCCccCCCCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeeEeecCCChhhHHHHHHhcCCCCc
Q 021264 98 NTLQDLQIDYVDLYLIHWPARMKKGSVGFNPENLLPLDIPSTWRAMEALYDSGKARAIGVCNFSTKKLGDLLEIARVPPA 177 (315)
Q Consensus 98 ~sL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~L~~lk~~GkIr~iGvS~~~~~~l~~~~~~~~~~~~ 177 (315)
..++.||+| +|=+++..|+. .++.++..+.|.+.|.+..|=+-+...-.-..-++- ...-.
T Consensus 96 ~~a~~lGvd-l~rllv~~P~~-----------------~E~al~~~e~lirsg~~~lVVvDSv~al~p~~E~e~-~~~~~ 156 (322)
T PF00154_consen 96 EYAESLGVD-LDRLLVVQPDT-----------------GEQALWIAEQLIRSGAVDLVVVDSVAALVPKAELEG-EIGDQ 156 (322)
T ss_dssp HHHHHTT---GGGEEEEE-SS-----------------HHHHHHHHHHHHHTTSESEEEEE-CTT-B-HHHHTT-STSST
T ss_pred hHHHhcCcc-ccceEEecCCc-----------------HHHHHHHHHHHhhcccccEEEEecCcccCCHHHHhh-ccccc
Confidence 567788988 44455555643 467899999999999988776665443222222221 11101
Q ss_pred ccccccCcccch-HHHHHHHHHcCceEEEe
Q 021264 178 VNQVECHSSWQQ-QKLHAFCKSKGVHLSGY 206 (315)
Q Consensus 178 ~~q~~~n~~~~~-~~~~~~~~~~gi~v~~~ 206 (315)
.+..+..+..+. +.+.+.+.+.++.++..
T Consensus 157 ~~g~~Ar~ms~~lr~lt~~l~~~~~~~i~I 186 (322)
T PF00154_consen 157 QVGLQARLMSQALRKLTPLLSKSNTTLIFI 186 (322)
T ss_dssp SSSHHHHHHHHHHHHHHHHHHTTT-EEEEE
T ss_pred cCcchHHHHHHHHHHHHHHHHhhceEEEEe
Confidence 111222222222 56788888999888874
Done!