Query 021266
Match_columns 315
No_of_seqs 142 out of 1538
Neff 9.8
Searched_HMMs 29240
Date Mon Mar 25 15:10:38 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021266.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/021266hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3b5d_A Multidrug transporter E 98.5 8.1E-07 2.8E-11 64.8 10.4 71 88-158 34-105 (110)
2 2i68_A Protein EMRE; transmemb 98.4 6.4E-07 2.2E-11 67.7 7.6 70 88-157 34-104 (137)
3 2i68_A Protein EMRE; transmemb 98.3 6.1E-07 2.1E-11 67.8 4.5 63 249-311 42-105 (137)
4 3b5d_A Multidrug transporter E 98.3 9.9E-06 3.4E-10 58.9 10.4 61 251-311 44-105 (110)
5 2b2h_A AMT-1, ammonium transpo 24.4 3.6E+02 0.012 23.6 16.9 85 121-211 231-316 (399)
6 2l2t_A Receptor tyrosine-prote 21.9 57 0.002 18.7 2.0 13 299-311 25-37 (44)
7 2ks1_B Epidermal growth factor 19.7 66 0.0023 18.4 2.0 12 300-311 27-38 (44)
8 3l1l_A Arginine/agmatine antip 14.0 4.4E+02 0.015 22.7 7.1 20 292-311 409-428 (445)
9 2jwa_A Receptor tyrosine-prote 5.2 4.2E+02 0.014 15.0 2.0 7 305-311 32-38 (44)
10 2hac_A T-cell surface glycopro 5.1 4.6E+02 0.016 13.8 2.4 19 121-139 13-31 (33)
No 1
>3b5d_A Multidrug transporter EMRE; helical membrane protein, multidrug resistance transporter, SMR, antiport, inner membrane, transmembrane; HET: P4P; 3.80A {Escherichia coli K12} PDB: 3b61_A 3b62_A*
Probab=98.54 E-value=8.1e-07 Score=64.77 Aligned_cols=71 Identities=15% Similarity=0.214 Sum_probs=64.0
Q ss_pred HHHHHHHHHHHHhhhhhcccchhhHHHHH-hhhhHHHHHHHHHHHhccccCcchhhhhhhhhhhhhhhcccc
Q 021266 88 SALGIIFCLSVVGGNVSLKYLPVSFNQAV-GATTPFFTAVFAYLMTLKREGWLTYVTLVPVVTGVIIASGGE 158 (315)
Q Consensus 88 l~~~~~~~~~~~~~~~al~~~~~~~~~~l-~~~~pi~~~lls~~~~~e~~~~~~~~~~~l~~~Gv~l~~~~~ 158 (315)
+...+++..+..+...++++.|.+.+..+ ....|+++.+++++++||++++.|++++.+++.|+..+...+
T Consensus 34 ~~~~~~~~~~~~~~~~al~~~p~s~ay~i~~g~~~v~~~l~~~~~~~E~~s~~~~~Gi~lIi~Gv~~l~~~~ 105 (110)
T 3b5d_A 34 VGTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLLS 105 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHhCChhhHHHHHhhHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence 44455678888999999999999999988 899999999999999999999999999999999999886544
No 2
>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli}
Probab=98.42 E-value=6.4e-07 Score=67.71 Aligned_cols=70 Identities=16% Similarity=0.216 Sum_probs=52.6
Q ss_pred HHHHHHHHHHHHhhhhhcccchhhHHHHH-hhhhHHHHHHHHHHHhccccCcchhhhhhhhhhhhhhhccc
Q 021266 88 SALGIIFCLSVVGGNVSLKYLPVSFNQAV-GATTPFFTAVFAYLMTLKREGWLTYVTLVPVVTGVIIASGG 157 (315)
Q Consensus 88 l~~~~~~~~~~~~~~~al~~~~~~~~~~l-~~~~pi~~~lls~~~~~e~~~~~~~~~~~l~~~Gv~l~~~~ 157 (315)
+...+++.+..++.+.++++.+++.+..+ .++.|+++.+++++++||++++.+++|+.++++|+.++...
T Consensus 34 ~l~i~~~~ls~~l~~~alk~i~~s~ay~iw~~l~pv~~~l~g~l~lgE~ls~~~~~Gi~LIi~GV~ll~~~ 104 (137)
T 2i68_A 34 VGTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLL 104 (137)
T ss_dssp CHHHHHHHHHHHHHHHHHC-----CHHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcC
Confidence 44556678899999999999999999888 89999999999999999999999999999999999988654
No 3
>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli}
Probab=98.28 E-value=6.1e-07 Score=67.81 Aligned_cols=63 Identities=11% Similarity=0.043 Sum_probs=44.5
Q ss_pred HHHHHHHHHHhcCchhhHHHh-hhhhhHhhhhhhheeecccccccccchhHHHHHHHHHhhhhh
Q 021266 249 FVNLTNFLVTKHTSALTLQVL-GNAKGAVAVVVSILIFRNPVSVTGMAGYTLTVIGVILYNEAK 311 (315)
Q Consensus 249 ~~~~~~~~~~~~~~a~~~s~~-~~~~~~~~~~~~~~~~ge~ls~~~~~G~~li~~g~~~~~~~~ 311 (315)
...++...++++.++..+..+ ..+.|+.+.++|+++|||++|..+++|.++++.|+++.+..+
T Consensus 42 ls~~l~~~alk~i~~s~ay~iw~~l~pv~~~l~g~l~lgE~ls~~~~~Gi~LIi~GV~ll~~~~ 105 (137)
T 2i68_A 42 ASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLLS 105 (137)
T ss_dssp HHHHHHHHHHC-----CHHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHhCChhHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence 334455688999999988888 899999999999999999999999999999999999987543
No 4
>3b5d_A Multidrug transporter EMRE; helical membrane protein, multidrug resistance transporter, SMR, antiport, inner membrane, transmembrane; HET: P4P; 3.80A {Escherichia coli K12} PDB: 3b61_A 3b62_A*
Probab=98.26 E-value=9.9e-06 Score=58.95 Aligned_cols=61 Identities=11% Similarity=0.062 Sum_probs=53.8
Q ss_pred HHHHHHHHhcCchhhHHHh-hhhhhHhhhhhhheeecccccccccchhHHHHHHHHHhhhhh
Q 021266 251 NLTNFLVTKHTSALTLQVL-GNAKGAVAVVVSILIFRNPVSVTGMAGYTLTVIGVILYNEAK 311 (315)
Q Consensus 251 ~~~~~~~~~~~~a~~~s~~-~~~~~~~~~~~~~~~~ge~ls~~~~~G~~li~~g~~~~~~~~ 311 (315)
..+...++|+.+...+..+ ..+.|+.+.+.+++++||++|..+++|..+++.|++..+..+
T Consensus 44 ~~~~~~al~~~p~s~ay~i~~g~~~v~~~l~~~~~~~E~~s~~~~~Gi~lIi~Gv~~l~~~~ 105 (110)
T 3b5d_A 44 FWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLLS 105 (110)
T ss_pred HHHHHHHHHhCChhhHHHHHhhHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence 3444478999999888777 899999999999999999999999999999999999987654
No 5
>2b2h_A AMT-1, ammonium transporter; membrane protein, transport protein; 1.54A {Archaeoglobus fulgidus} PDB: 2b2f_A 2b2i_A 2b2j_A
Probab=24.44 E-value=3.6e+02 Score=23.64 Aligned_cols=85 Identities=12% Similarity=0.033 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHhccccCcchhhhhhhhhhhhhhhc-cccCcccHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCChHHH
Q 021266 121 PFFTAVFAYLMTLKREGWLTYVTLVPVVTGVIIAS-GGEPSFHLFGFIMCISATAARALKTVLQGILLSSEGEKLNSMNL 199 (315)
Q Consensus 121 pi~~~lls~~~~~e~~~~~~~~~~~l~~~Gv~l~~-~~~~~~~~~G~~~~l~a~~~~a~~~v~~k~~~~~~~~~~~~~~~ 199 (315)
-+..++.++.. +|++......-. +.|.+-+. ..+.-.++...++.+++++..-....+.+|+. -++..+....
T Consensus 231 ~l~~~~~~~~~--gk~~~~~~~nG~--lAGLVaITa~~~~v~p~~A~iiG~iag~i~~~~~~l~~kl~--iDD~l~a~~v 304 (399)
T 2b2h_A 231 GFVWMVIGWIK--GKPGSLGIVSGA--IAGLAAITPAAGFVDVKGAIVIGLVAGIVCYLAMDFRIKKK--IDESLDAWAI 304 (399)
T ss_dssp HHHHHHHHHHH--SCCCHHHHHHHH--HHHHHHHTTTTTTCCHHHHHHHHHHHHHHHHHHHHHHHHTT--CCCTTCHHHH
T ss_pred HHHHHHHHHHH--cCCCHHHHHHHH--HHhhhhhccccccCCHHHHHHHHHHHHHHHHHHHHHHHHcC--CCCCCCceec
Confidence 33344455544 555544333222 22333332 23333334455556555554433334444442 3444455555
Q ss_pred HHHHhHHHHHHH
Q 021266 200 LMYMAPVAAIFL 211 (315)
Q Consensus 200 ~~~~~~~~~~~~ 211 (315)
=....+.+.+..
T Consensus 305 Hgv~Gi~G~l~~ 316 (399)
T 2b2h_A 305 HGIGGLWGSVAV 316 (399)
T ss_dssp HHHHHHHHHHHH
T ss_pred cchhhHHHHHHH
Confidence 545555555444
No 6
>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}
Probab=21.91 E-value=57 Score=18.70 Aligned_cols=13 Identities=15% Similarity=0.281 Sum_probs=5.8
Q ss_pred HHHHHHHHhhhhh
Q 021266 299 LTVIGVILYNEAK 311 (315)
Q Consensus 299 li~~g~~~~~~~~ 311 (315)
++..+.++|.+.|
T Consensus 25 ii~~~~~~~~RRR 37 (44)
T 2l2t_A 25 IVGLTFAVYVRRK 37 (44)
T ss_dssp HHHHHHHHHHHTT
T ss_pred HHHHHHHHHhhhh
Confidence 3344444554443
No 7
>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}
Probab=19.72 E-value=66 Score=18.42 Aligned_cols=12 Identities=17% Similarity=0.487 Sum_probs=5.0
Q ss_pred HHHHHHHhhhhh
Q 021266 300 TVIGVILYNEAK 311 (315)
Q Consensus 300 i~~g~~~~~~~~ 311 (315)
+..+.++|.+.+
T Consensus 27 i~~~~~~~~RRr 38 (44)
T 2ks1_B 27 VALGIGLFMRRR 38 (44)
T ss_dssp HHHHHHHHHHTT
T ss_pred HHHHHHHHhhhh
Confidence 333444444433
No 8
>3l1l_A Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC, Arg-bound, amino-acid transport, cell inner membrane, cell membrane, membrane; HET: ARG BNG; 3.00A {Escherichia coli} PDB: 3h5m_A* 3h6b_A 3lrb_A 3lrc_A 3ob6_A* 3hqk_A 3ncy_A
Probab=13.97 E-value=4.4e+02 Score=22.72 Aligned_cols=20 Identities=10% Similarity=0.081 Sum_probs=13.9
Q ss_pred cccchhHHHHHHHHHhhhhh
Q 021266 292 TGMAGYTLTVIGVILYNEAK 311 (315)
Q Consensus 292 ~~~~G~~li~~g~~~~~~~~ 311 (315)
..+.|...++.|..+|...+
T Consensus 409 ~~~~~~~~~~~g~~~y~~~~ 428 (445)
T 3l1l_A 409 EVMWSFVTLMVITAMYALNY 428 (445)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 34567888888888886543
No 9
>2jwa_A Receptor tyrosine-protein kinase ERBB-2; transmembrane helix dimer, protein kinase receptor membrane domain, ATP-binding, glycoprotein; NMR {Homo sapiens} PDB: 2ks1_A
Probab=5.21 E-value=4.2e+02 Score=15.04 Aligned_cols=7 Identities=0% Similarity=-0.055 Sum_probs=2.8
Q ss_pred HHhhhhh
Q 021266 305 ILYNEAK 311 (315)
Q Consensus 305 ~~~~~~~ 311 (315)
.+|.+++
T Consensus 32 ~~~~RRR 38 (44)
T 2jwa_A 32 GILIKRR 38 (44)
T ss_dssp HHHHHHH
T ss_pred Hhheehh
Confidence 3444333
No 10
>2hac_A T-cell surface glycoprotein CD3 zeta chain; transmembrane, alpha helix, membrane protein; NMR {Homo sapiens}
Probab=5.10 E-value=4.6e+02 Score=13.81 Aligned_cols=19 Identities=5% Similarity=0.015 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHhccccCcc
Q 021266 121 PFFTAVFAYLMTLKREGWL 139 (315)
Q Consensus 121 pi~~~lls~~~~~e~~~~~ 139 (315)
-+.-.++..++.+||+.+.
T Consensus 13 ~iYgii~T~Ly~R~K~~~~ 31 (33)
T 2hac_A 13 FIYGVILTALFLRVKFSRS 31 (33)
T ss_dssp HHHHHHHHHHHHHHHSTTC
T ss_pred HHHHHHHHHHHHHHHhhcc
Confidence 3444555666667776653
Done!