Query 021266
Match_columns 315
No_of_seqs 142 out of 1538
Neff 9.8
Searched_HMMs 13730
Date Mon Mar 25 15:10:45 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021266.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/021266hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2e74g1 f.23.26.1 (G:9-35) Pet 28.0 28 0.002 15.8 2.8 20 163-182 2-21 (27)
2 d1u7ga_ f.44.1.1 (A:) Ammonium 9.9 3.9E+02 0.029 21.1 19.0 55 130-186 248-304 (383)
3 d2p7tc1 f.14.1.1 (C:86-119) Po 2.9 3.4E+02 0.025 12.6 2.1 15 120-134 19-33 (34)
4 d1v54d_ f.23.1.1 (D:) Mitochon 2.6 7.8E+02 0.057 16.2 3.9 21 18-38 78-98 (144)
5 d1v54k_ f.23.5.1 (K:) Mitochon 2.6 4.8E+02 0.035 13.7 3.5 23 164-186 8-31 (49)
6 d2r6gf1 e.70.1.1 (F:13-260) Ma 2.4 1E+03 0.075 17.0 6.1 58 89-150 7-64 (248)
7 d1iwga8 f.35.1.1 (A:513-566,A: 2.3 9.7E+02 0.071 16.5 5.5 28 276-303 96-123 (222)
8 d2h5na1 a.287.1.2 (A:1-132) Hy 2.1 6.2E+02 0.045 15.2 2.4 34 138-175 83-116 (132)
9 d1q90n_ f.23.27.1 (N:) PetN su 1.7 5.4E+02 0.039 11.7 2.9 16 170-185 13-28 (31)
10 d1eysh2 f.23.10.1 (H:7-43) Pho 1.6 6.4E+02 0.047 12.3 2.2 18 296-313 12-29 (37)
No 1
>d2e74g1 f.23.26.1 (G:9-35) PetG subunit of the cytochrome b6f complex {Mastigocladus laminosus [TaxId: 83541]}
Probab=27.96 E-value=28 Score=15.83 Aligned_cols=20 Identities=10% Similarity=0.112 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 021266 163 LFGFIMCISATAARALKTVL 182 (315)
Q Consensus 163 ~~G~~~~l~a~~~~a~~~v~ 182 (315)
.+|.+.+-.+.+++|.|.-+
T Consensus 2 vlgli~~tl~glf~aayqqy 21 (27)
T d2e74g1 2 VLGLVFATLGGLFYAAYQQY 21 (27)
T ss_dssp HHHHHHHHHHHHHHHHHHHT
T ss_pred eeeehHHHHHHHHHHHHHHh
Confidence 36888888899998887543
No 2
>d1u7ga_ f.44.1.1 (A:) Ammonium transporter AmtB {Escherichia coli [TaxId: 562]}
Probab=9.86 E-value=3.9e+02 Score=21.07 Aligned_cols=55 Identities=15% Similarity=-0.042 Sum_probs=23.4
Q ss_pred HHhccccCcchhhhhhhhhhhhhhhccc-cCcccHHHHHHHHHHHHH-HHHHHHHHHHH
Q 021266 130 LMTLKREGWLTYVTLVPVVTGVIIASGG-EPSFHLFGFIMCISATAA-RALKTVLQGIL 186 (315)
Q Consensus 130 ~~~~e~~~~~~~~~~~l~~~Gv~l~~~~-~~~~~~~G~~~~l~a~~~-~a~~~v~~k~~ 186 (315)
.+.++|.+......-. +.|.+-+... +.-.++...+...+++.. +-.+..+.+|.
T Consensus 248 ~~~~~k~~~~~~~nG~--LaGLVaita~~~~v~p~~A~~iG~i~g~i~~~~~~~l~~~~ 304 (383)
T d1u7ga_ 248 WALRGLPSLLGACSGA--IAGLVGVTPACGYIGVGGALIIGVVAGLAGLWGVTMLKRLL 304 (383)
T ss_dssp HHHHSSCCHHHHHHHH--HHHHHHHTTTTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhcCCCCHHHHHHHh--hhhhhhcccCccccchhhHHHHHhhccHHHHHHHHHHHhhc
Confidence 3445556554433322 2344444332 322333345555554443 33334344444
No 3
>d2p7tc1 f.14.1.1 (C:86-119) Potassium channel protein {Streptomyces lividans [TaxId: 1916]}
Probab=2.88 E-value=3.4e+02 Score=12.57 Aligned_cols=15 Identities=7% Similarity=0.073 Sum_probs=7.5
Q ss_pred hHHHHHHHHHHHhcc
Q 021266 120 TPFFTAVFAYLMTLK 134 (315)
Q Consensus 120 ~pi~~~lls~~~~~e 134 (315)
..++.++..|+..+|
T Consensus 19 glv~aa~atwfvgre 33 (34)
T d2p7tc1 19 GLVTAALATWFVGRE 33 (34)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHhhccc
Confidence 344455555555444
No 4
>d1v54d_ f.23.1.1 (D:) Mitochondrial cytochrome c oxidase subunit IV {Cow (Bos taurus) [TaxId: 9913]}
Probab=2.62 E-value=7.8e+02 Score=16.19 Aligned_cols=21 Identities=10% Similarity=0.180 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 021266 18 TLGLITIWYSSNIGVILLNKY 38 (315)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~k~ 38 (315)
....++++++.++.+....|.
T Consensus 78 v~g~~~~~i~~s~~i~~~~r~ 98 (144)
T d1v54d_ 78 VVGAAMFFIGFTALLLIWEKH 98 (144)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444
No 5
>d1v54k_ f.23.5.1 (K:) Mitochondrial cytochrome c oxidase subunit VIIb {Cow (Bos taurus) [TaxId: 9913]}
Probab=2.60 E-value=4.8e+02 Score=13.66 Aligned_cols=23 Identities=17% Similarity=0.244 Sum_probs=14.7
Q ss_pred HHH-HHHHHHHHHHHHHHHHHHHH
Q 021266 164 FGF-IMCISATAARALKTVLQGIL 186 (315)
Q Consensus 164 ~G~-~~~l~a~~~~a~~~v~~k~~ 186 (315)
.|. ++.-++++|.|.+....-+.
T Consensus 8 YGn~vL~~Ga~fc~avW~yv~TQ~ 31 (49)
T d1v54k_ 8 YGNAVLASGATFCVAVWVYMATQI 31 (49)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred cCcEEEecccchhhhhhhheeeee
Confidence 343 44556778888877666554
No 6
>d2r6gf1 e.70.1.1 (F:13-260) Maltose transport system permease protein MalF {Escherichia coli [TaxId: 562]}
Probab=2.38 E-value=1e+03 Score=17.04 Aligned_cols=58 Identities=17% Similarity=0.044 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHhhhhhcccchhhHHHHHhhhhHHHHHHHHHHHhccccCcchhhhhhhhhhh
Q 021266 89 ALGIIFCLSVVGGNVSLKYLPVSFNQAVGATTPFFTAVFAYLMTLKREGWLTYVTLVPVVTG 150 (315)
Q Consensus 89 ~~~~~~~~~~~~~~~al~~~~~~~~~~l~~~~pi~~~lls~~~~~e~~~~~~~~~~~l~~~G 150 (315)
+.+++.++..+.....+..-+-..+ ...-+.+.+..++++.+|.-..|++-=++++..
T Consensus 7 ll~l~~a~~~~~~~~~~~~~~~~~a----~~~~~~~~~~~~vy~s~r~~p~kyi~PG~~~l~ 64 (248)
T d2r6gf1 7 VLGLLGLLVGYLVVLMYAQGEYLFA----ITTLILSSAGLYIFANRKAYAWRYVYPGMAGMG 64 (248)
T ss_dssp HHHHHHHHHHHTHHHHHGGGCHHHH----HHHHHHHHHHHHHHSSSCCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHcchHHHH----HHHHHHHHheEEEEEccCccceehhhhHHHHHH
Confidence 3455555544444444444333332 233445566667777777766666544444333
No 7
>d1iwga8 f.35.1.1 (A:513-566,A:869-1036) Multidrug efflux transporter AcrB transmembrane domain {Escherichia coli [TaxId: 562]}
Probab=2.28 E-value=9.7e+02 Score=16.48 Aligned_cols=28 Identities=11% Similarity=-0.062 Sum_probs=20.0
Q ss_pred hhhhhhheeecccccccccchhHHHHHH
Q 021266 276 VAVVVSILIFRNPVSVTGMAGYTLTVIG 303 (315)
Q Consensus 276 ~~~~~~~~~~ge~ls~~~~~G~~li~~g 303 (315)
...+.+..+.|.+++....+|..+.++-
T Consensus 96 ~~~~~~l~~~g~~~~~~~~~g~i~l~Gi 123 (222)
T d1iwga8 96 IGALLAATFRGLTNDVYFQVGLLTTIGL 123 (222)
T ss_dssp HHHHHHHHHTTCCBCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCchhhhhcccccchhhh
Confidence 3445666677889999888888775543
No 8
>d2h5na1 a.287.1.2 (A:1-132) Hypothetical protein PG1108 {Porphyromonas gingivalis [TaxId: 837]}
Probab=2.08 E-value=6.2e+02 Score=15.20 Aligned_cols=34 Identities=26% Similarity=0.315 Sum_probs=19.6
Q ss_pred cchhhhhhhhhhhhhhhccccCcccHHHHHHHHHHHHH
Q 021266 138 WLTYVTLVPVVTGVIIASGGEPSFHLFGFIMCISATAA 175 (315)
Q Consensus 138 ~~~~~~~~l~~~Gv~l~~~~~~~~~~~G~~~~l~a~~~ 175 (315)
++++.+ ..+|+.+.+.+|.+.+-+ .+|.+++.+|
T Consensus 83 rkkyva---sylgvimasdgdiddnel-alwtlistlc 116 (132)
T d2h5na1 83 RKKYVA---SYLGVIMASDGDIDDNEL-ALWTLISTLC 116 (132)
T ss_dssp HHHHHH---HHHHHHSCBTTBCCHHHH-HHHHHHHHHH
T ss_pred HHHHHH---HHhhheeccCCCCCccHh-HHHHHHHHHh
Confidence 445543 346778878777766533 3455555544
No 9
>d1q90n_ f.23.27.1 (N:) PetN subunit of the cytochrome b6f complex {Chlamydomonas reinhardtii [TaxId: 3055]}
Probab=1.71 E-value=5.4e+02 Score=11.71 Aligned_cols=16 Identities=19% Similarity=0.110 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHHHHH
Q 021266 170 ISATAARALKTVLQGI 185 (315)
Q Consensus 170 l~a~~~~a~~~v~~k~ 185 (315)
+.+.+++++..+.-.|
T Consensus 13 ~~atfsfslslvvwgr 28 (31)
T d1q90n_ 13 TCVMFSFSLSLVVWGR 28 (31)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHhheeeEEEEEEec
Confidence 4556666666665443
No 10
>d1eysh2 f.23.10.1 (H:7-43) Photosystem II reaction centre subunit H, transmembrane region {Thermochromatium tepidum [TaxId: 1050]}
Probab=1.62 E-value=6.4e+02 Score=12.29 Aligned_cols=18 Identities=22% Similarity=0.504 Sum_probs=10.7
Q ss_pred hhHHHHHHHHHhhhhhcc
Q 021266 296 GYTLTVIGVILYNEAKRQ 313 (315)
Q Consensus 296 G~~li~~g~~~~~~~~~~ 313 (315)
..-+-+.|.+.|-..+.+
T Consensus 12 ~Fw~FFagLi~YL~rE~~ 29 (37)
T d1eysh2 12 AFWLFFFGLIIYLRREDK 29 (37)
T ss_dssp HHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHhccc
Confidence 344556777777655443
Done!