BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 021267
(315 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P65058|Y2951_MYCBO Uncharacterized protein Mb2951c OS=Mycobacterium bovis (strain ATCC
BAA-935 / AF2122/97) GN=Mb2951c PE=4 SV=1
Length = 207
Score = 38.9 bits (89), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 25/41 (60%)
Query: 247 EKEIDISKNIRDMVHLEITINVICDPSCKGICLKCGTNLNT 287
++ ID+ + I D V LE+ + +C P C G+C +CG L +
Sbjct: 136 DETIDLEQPIIDAVGLELPFSPVCRPDCPGLCPQCGVPLAS 176
>sp|P65057|Y2926_MYCTU Uncharacterized protein Rv2926c/MT2996 OS=Mycobacterium
tuberculosis GN=Rv2926c PE=4 SV=1
Length = 207
Score = 38.9 bits (89), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 25/41 (60%)
Query: 247 EKEIDISKNIRDMVHLEITINVICDPSCKGICLKCGTNLNT 287
++ ID+ + I D V LE+ + +C P C G+C +CG L +
Sbjct: 136 DETIDLEQPIIDAVGLELPFSPVCRPDCPGLCPQCGVPLAS 176
>sp|O69468|Y1660_MYCLE Uncharacterized protein ML1660 OS=Mycobacterium leprae (strain TN)
GN=ML1660 PE=4 SV=1
Length = 217
Score = 35.0 bits (79), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 23/36 (63%)
Query: 250 IDISKNIRDMVHLEITINVICDPSCKGICLKCGTNL 285
ID+ ++I D V +E+ +C C G+C +CGT+L
Sbjct: 143 IDLEQSIIDAVGIELPFAPMCRSDCPGLCAECGTSL 178
>sp|P53382|MRP_MYCLE Protein mrp homolog OS=Mycobacterium leprae (strain TN) GN=mrp PE=3
SV=2
Length = 383
Score = 32.0 bits (71), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 17/37 (45%), Positives = 23/37 (62%), Gaps = 6/37 (16%)
Query: 136 RVTKAVKDYPNGTPVQISIDV------TKKKQKLRLD 166
RVTKA+ D P V++S+DV TK ++KLR D
Sbjct: 68 RVTKAIADVPGTAAVEVSLDVMSDEQRTKLRKKLRGD 104
>sp|Q5RAY1|P3C2A_PONAB Phosphatidylinositol 4-phosphate 3-kinase C2 domain-containing
subunit alpha OS=Pongo abelii GN=PIK3C2A PE=2 SV=1
Length = 1685
Score = 32.0 bits (71), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 42/84 (50%), Gaps = 12/84 (14%)
Query: 71 DETESYDWEDQEDVEED-AGSPWEGAIIYKRNPSITHLEYCTTLERLGLGKLSTEVSRSR 129
D E D E++++V A PW+ ++ +R+ + H LER GK + + +R
Sbjct: 282 DNVEVLDHEEEKNVSSLLAKDPWDAVLLEERSTANCH------LERKMNGKSLSVATVTR 335
Query: 130 ASAMGLRVTKAVKDY-----PNGT 148
+ ++ +R T+ K + PNGT
Sbjct: 336 SQSLNIRTTQLAKAHISQKDPNGT 359
>sp|Q2GYD8|ATG2_CHAGB Autophagy-related protein 2 OS=Chaetomium globosum (strain ATCC
6205 / CBS 148.51 / DSM 1962 / NBRC 6347 / NRRL 1970)
GN=ATG2 PE=3 SV=1
Length = 2043
Score = 31.6 bits (70), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 39/140 (27%), Positives = 53/140 (37%), Gaps = 16/140 (11%)
Query: 113 LERLGLGKLSTEVSRSRASAMGLRVTKAVKDYPNGTPVQISID-------VTKKKQKLRL 165
LERL LG L S +A + LRVT + Y +P+ ID V KK+K R
Sbjct: 60 LERL-LG-LPPAFSLQKAKVLILRVTIPMDFY--ASPITAEIDGVDIRLKVASKKEKDRQ 115
Query: 166 DGIIRTVLTLGCNRCGEPAAQSVFSDFSVLLSEQPIEEPEIIHIGMMFGEDKSKSSTGNG 225
D R G G A + L QP+ E E + + +S
Sbjct: 116 DAGKR-----GKGMAGSEAVPTAADLAQSFLETQPVAEKEELEQALAAETQDLAASMAAS 170
Query: 226 SEEEDDDASIDWDDRLYFPL 245
E DDD+ + L P+
Sbjct: 171 EPESDDDSPVGTGQPLSLPV 190
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.315 0.132 0.398
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 119,128,895
Number of Sequences: 539616
Number of extensions: 5086746
Number of successful extensions: 18618
Number of sequences better than 100.0: 18
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 18601
Number of HSP's gapped (non-prelim): 28
length of query: 315
length of database: 191,569,459
effective HSP length: 117
effective length of query: 198
effective length of database: 128,434,387
effective search space: 25430008626
effective search space used: 25430008626
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.5 bits)
S2: 61 (28.1 bits)