Query 021267
Match_columns 315
No_of_seqs 188 out of 1084
Neff 5.5
Searched_HMMs 46136
Date Fri Mar 29 08:54:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021267.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/021267hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF02620 DUF177: Uncharacteriz 99.9 4.4E-27 9.6E-32 193.3 10.4 117 165-309 1-119 (119)
2 COG1399 Predicted metal-bindin 99.9 1.9E-25 4.2E-30 198.7 12.0 144 136-311 33-176 (176)
3 PRK11193 hypothetical protein; 99.9 2.8E-24 6E-29 189.9 13.1 130 147-310 42-172 (172)
4 PF10892 DUF2688: Protein of u 26.2 30 0.00066 25.8 0.7 18 168-186 5-22 (60)
5 cd01177 IPT_NFkappaB IPT domai 26.1 1.2E+02 0.0027 25.1 4.3 47 89-160 42-88 (102)
6 cd01178 IPT_NFAT IPT domain of 22.5 1.4E+02 0.003 24.7 4.0 48 86-159 40-87 (101)
7 PF06448 DUF1081: Domain of Un 17.3 4.2E+02 0.0091 22.0 5.9 30 142-171 37-68 (118)
8 PRK13130 H/ACA RNA-protein com 17.2 84 0.0018 23.2 1.5 11 275-285 17-27 (56)
9 cd00602 IPT_TF IPT domain of e 15.1 2.8E+02 0.0061 22.7 4.2 49 88-162 41-89 (101)
10 COG3217 Uncharacterized Fe-S p 14.6 1.9E+02 0.0042 27.9 3.5 40 150-189 173-214 (270)
No 1
>PF02620 DUF177: Uncharacterized ACR, COG1399; InterPro: IPR003772 This entry describes proteins of unknown function.
Probab=99.94 E-value=4.4e-27 Score=193.29 Aligned_cols=117 Identities=32% Similarity=0.702 Sum_probs=95.7
Q ss_pred EEEEEEEEEEeeccccccccccceeeeeEEeeccCCCCchhhhhcccccccCcCCCCCCCCCCCCCccccccCCcccccc
Q 021267 165 LDGIIRTVLTLGCNRCGEPAAQSVFSDFSVLLSEQPIEEPEIIHIGMMFGEDKSKSSTGNGSEEEDDDASIDWDDRLYFP 244 (315)
Q Consensus 165 V~G~I~g~V~l~C~RCLePv~~~I~~ef~l~~~~~~~~e~~~v~~~e~f~ed~~~~~~~~e~eedddde~idlDd~l~~~ 244 (315)
|+|+++|+++++|+|||+||.++|+.+|.+.|...... .. ....++++ ..+++
T Consensus 1 v~g~i~~~v~~~C~RCL~~~~~~i~~~~~~~~~~~~~~---------------~~-----~~~~~~~~-------~~~~~ 53 (119)
T PF02620_consen 1 VDGRIEGTVTLPCDRCLEPFDYPIDEDFEEVFVPEEEE---------------EE-----DEELDEED-------EEVIP 53 (119)
T ss_pred CEEEEEEEEEEEEcccCcccCceEEEEEEEEEEcCCcc---------------cc-----cccCCCCC-------ceEEe
Confidence 68999999999999999999999999999988654110 00 00001011 12345
Q ss_pred CCCcccchhHHHHHHHHhhCCCcccCCCCCCC--CcccCCCCCCCCCCcCcccccCCCCCHHHHhch
Q 021267 245 LEEKEIDISKNIRDMVHLEITINVICDPSCKG--ICLKCGTNLNTSTCNCSKEEVKGKTYGPLGNLR 309 (315)
Q Consensus 245 ~e~~eIDL~~lV~DeIlLaLPm~pLC~edCkG--lCp~cG~nln~~~c~c~~ee~~DprfA~Lk~LK 309 (315)
+.++.|||.++|+|+|+|+|||+|+|+++|+| +|+.||.++|.+.|+|.++. .|||||+|++||
T Consensus 54 ~~~~~iDl~~~i~e~ilL~iP~~~~c~~~C~~~~~~~~~~~~~~~~~~~~~~~~-~dPrfa~L~~Lk 119 (119)
T PF02620_consen 54 VEDDEIDLAELIEEEILLAIPMKPLCSEDCKGEMLCPVCGANLNEEPCECEEEK-IDPRFAALKKLK 119 (119)
T ss_pred cCCCEEeHHHHHHHHHHHcCCCcccCcccCcccccCCcccccccccccccccCC-CCCCHHHHhccC
Confidence 68999999999999999999999999999999 99999999999999886664 699999999997
No 2
>COG1399 Predicted metal-binding, possibly nucleic acid-binding protein [General function prediction only]
Probab=99.93 E-value=1.9e-25 Score=198.66 Aligned_cols=144 Identities=26% Similarity=0.481 Sum_probs=107.1
Q ss_pred cccccccccCCCCcEEEEEEEEEeCCEEEEEEEEEEEEEeeccccccccccceeeeeEEeeccCCCCchhhhhccccccc
Q 021267 136 RVTKAVKDYPNGTPVQISIDVTKKKQKLRLDGIIRTVLTLGCNRCGEPAAQSVFSDFSVLLSEQPIEEPEIIHIGMMFGE 215 (315)
Q Consensus 136 ~~~~~v~~~~~~spV~Vsl~l~r~~~~l~V~G~I~g~V~l~C~RCLePv~~~I~~ef~l~~~~~~~~e~~~v~~~e~f~e 215 (315)
|+...+.+...+..+.+.+...+. ++.++|+++++++++|+|||+|+.++++..++..|...+.
T Consensus 33 rv~~~v~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~C~Rcl~~~~~~~~~~~~~~f~~~~~-------------- 96 (176)
T COG1399 33 RVGEEVIDVDPGVVVGVSAYAEID--LVVLDGQVSAEVTLECQRCLEPVEYPLDVTVTELFVRPDE-------------- 96 (176)
T ss_pred hhhhhhhccCcceeeEEEEeeccc--eEEEEEEEEEEEEEcccccCCcceeeEEEEEEEEeecCcc--------------
Confidence 444445454444333333332233 7999999999999999999999999999999888764310
Q ss_pred CcCCCCCCCCCCCCCccccccCCccccccCCCcccchhHHHHHHHHhhCCCcccCCCCCCCCcccCCCCCCCCCCcCccc
Q 021267 216 DKSKSSTGNGSEEEDDDASIDWDDRLYFPLEEKEIDISKNIRDMVHLEITINVICDPSCKGICLKCGTNLNTSTCNCSKE 295 (315)
Q Consensus 216 d~~~~~~~~e~eedddde~idlDd~l~~~~e~~eIDL~~lV~DeIlLaLPm~pLC~edCkGlCp~cG~nln~~~c~c~~e 295 (315)
.. +++..+|+ + + ..+++++|||.++|+|+|+|||||+|+|+++|+|+|+.||+ |+..+++....
T Consensus 97 -~~------~~~~~~dd------~-v-~v~~~~~iDL~~~VeDeilLalP~~~l~~~~~~g~~~~~g~-~~~~~ee~~~~ 160 (176)
T COG1399 97 -QA------DEEPLEDD------E-V-EVIEDGEIDLLESVEDEILLALPLVPLCEPECCGLCPPCGV-WGVLPEEGEKK 160 (176)
T ss_pred -cc------ccccCCCc------e-e-eeccCCcccHHHHHHHHHHHhCCCccccCccccccCcccCC-ccccCchhhhh
Confidence 00 00011111 1 2 34567799999999999999999999999999999999999 99988775544
Q ss_pred ccCCCCCHHHHhchhh
Q 021267 296 EVKGKTYGPLGNLRKQ 311 (315)
Q Consensus 296 e~~DprfA~Lk~LKk~ 311 (315)
..+|||||+|++||++
T Consensus 161 ~~vd~rfA~La~Lk~~ 176 (176)
T COG1399 161 EKVDPRFAVLADLKDK 176 (176)
T ss_pred ccCCChHHHHHHhhcC
Confidence 4579999999999975
No 3
>PRK11193 hypothetical protein; Provisional
Probab=99.91 E-value=2.8e-24 Score=189.88 Aligned_cols=130 Identities=21% Similarity=0.324 Sum_probs=103.4
Q ss_pred CCcEEEEEEEEEeC-CEEEEEEEEEEEEEeeccccccccccceeeeeEEeeccCCCCchhhhhcccccccCcCCCCCCCC
Q 021267 147 GTPVQISIDVTKKK-QKLRLDGIIRTVLTLGCNRCGEPAAQSVFSDFSVLLSEQPIEEPEIIHIGMMFGEDKSKSSTGNG 225 (315)
Q Consensus 147 ~spV~Vsl~l~r~~-~~l~V~G~I~g~V~l~C~RCLePv~~~I~~ef~l~~~~~~~~e~~~v~~~e~f~ed~~~~~~~~e 225 (315)
.++|.|++++.+.+ +++.|+|+++|++.++|+|||+||.++++.+|.+.++.+ ++.
T Consensus 42 ~~~v~v~~~~~~~~~~~~~v~g~v~~~v~l~C~RCL~~~~~~l~~~~~~~~~~~---------------e~~-------- 98 (172)
T PRK11193 42 DSDVEVSLSFGIDNQRLVVLKGKAVVEVTLECQRCNEPFTHQVEVEFCFSPVRN---------------DEQ-------- 98 (172)
T ss_pred CCceEEEEEEEEcCCCeEEEEEEEEEEEEEECCCCCccCceEEEEEEEEEEecC---------------hhh--------
Confidence 46899999999987 689999999999999999999999999999998876432 000
Q ss_pred CCCCCccccccCCccccccCCCcccchhHHHHHHHHhhCCCcccCCCCCCCCcccCCCCCCCCCCcCcccccCCCCCHHH
Q 021267 226 SEEEDDDASIDWDDRLYFPLEEKEIDISKNIRDMVHLEITINVICDPSCKGICLKCGTNLNTSTCNCSKEEVKGKTYGPL 305 (315)
Q Consensus 226 ~eedddde~idlDd~l~~~~e~~eIDL~~lV~DeIlLaLPm~pLC~edCkGlCp~cG~nln~~~c~c~~ee~~DprfA~L 305 (315)
. ++.+++ ++.+ +..+++.|||.++|+|+|+|+|||+|+|+++ +|+.||.++|.++|.|++ .+++|||+|
T Consensus 99 ~-~~~~~~---~e~~--~~~~~~~iDl~~lv~dellLaLP~~plc~~~---~C~~~~~~~~~~~~~~~~--~~~~PFAvL 167 (172)
T PRK11193 99 A-EELPEA---YEPI--EVNEFGEVDLLQLVEDELILALPIVPMHDSE---HCEVSEADMVFGELPEEA--EKPNPFAVL 167 (172)
T ss_pred h-hhCccc---ccce--eeCCcCcccHHHHHHHHHHHcCCCcCcCCcc---cCCCcccccccCCCchhc--cCCChHHHH
Confidence 0 000111 1211 2235789999999999999999999999975 789999999999888753 346789999
Q ss_pred Hhchh
Q 021267 306 GNLRK 310 (315)
Q Consensus 306 k~LKk 310 (315)
|+||+
T Consensus 168 ~~Lk~ 172 (172)
T PRK11193 168 ASLKR 172 (172)
T ss_pred HHhcC
Confidence 99985
No 4
>PF10892 DUF2688: Protein of unknown function (DUF2688); InterPro: IPR024392 Members of this protein family are annotated as KleB, and may play a role in the regulation of transcription in plasmids.
Probab=26.22 E-value=30 Score=25.77 Aligned_cols=18 Identities=28% Similarity=0.722 Sum_probs=14.3
Q ss_pred EEEEEEEeecccccccccc
Q 021267 168 IIRTVLTLGCNRCGEPAAQ 186 (315)
Q Consensus 168 ~I~g~V~l~C~RCLePv~~ 186 (315)
.+. .|++.|.||.+++..
T Consensus 5 kie-IV~t~CrRCGk~i~t 22 (60)
T PF10892_consen 5 KIE-IVETPCRRCGKSIRT 22 (60)
T ss_pred ceE-eeeehhhhhCccHHH
Confidence 344 689999999999864
No 5
>cd01177 IPT_NFkappaB IPT domain of the transcription factor NFkappaB and related transcription factors. NFkappaB is considered a central regulator of stress responses, activated by different stressful conditions, including physical stress, oxidative stress, and exposure to certain chemicals. NFkappaB blocking cell apoptosis in several cell types, gives it an important role in cell proliferation and differentiation.
Probab=26.12 E-value=1.2e+02 Score=25.08 Aligned_cols=47 Identities=19% Similarity=0.343 Sum_probs=33.8
Q ss_pred CCCCceeEEeecCCccccceEEeeecccCCCCCChhhhhhhhhcccccccccccccCCCCcEEEEEEEEEeC
Q 021267 89 GSPWEGAIIYKRNPSITHLEYCTTLERLGLGKLSTEVSRSRASAMGLRVTKAVKDYPNGTPVQISIDVTKKK 160 (315)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~y~~~l~~l~~g~~s~~~s~~~~~~~~~~~~~~v~~~~~~spV~Vsl~l~r~~ 160 (315)
+..||+..-|. .+--|-.|++.++ +..-.+.....||.|.+.+.|..
T Consensus 42 ~~~We~~g~f~--~~dVH~Q~AIvfk-----------------------TPpY~~~~I~~pV~V~iqL~Rps 88 (102)
T cd01177 42 ETVWEAFGDFS--QTDVHRQYAIVFR-----------------------TPPYHDPDITEPVKVKIQLKRPS 88 (102)
T ss_pred CCceEEEeeEC--HHHcccceEEEEe-----------------------CCCCCCCcCCCceEEEEEEEeCC
Confidence 66799966554 3567778999998 33334445667999999999863
No 6
>cd01178 IPT_NFAT IPT domain of the NFAT family of transcription factors. NFAT transcription complexes are a target of calcineurin, a calcium dependent phosphatase, and activate genes mainly involved in cell-cell-interaction.
Probab=22.47 E-value=1.4e+02 Score=24.70 Aligned_cols=48 Identities=19% Similarity=0.367 Sum_probs=34.4
Q ss_pred hhcCCCCceeEEeecCCccccceEEeeecccCCCCCChhhhhhhhhcccccccccccccCCCCcEEEEEEEEEe
Q 021267 86 EDAGSPWEGAIIYKRNPSITHLEYCTTLERLGLGKLSTEVSRSRASAMGLRVTKAVKDYPNGTPVQISIDVTKK 159 (315)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~y~~~l~~l~~g~~s~~~s~~~~~~~~~~~~~~v~~~~~~spV~Vsl~l~r~ 159 (315)
+|....||...-+.++- .| .|++-++ +..-.+.....||+|.+.+.+.
T Consensus 40 ~dG~~~WE~~a~f~~~~--~h-Q~aIvf~-----------------------tPpY~~~~I~~pV~V~~~l~~~ 87 (101)
T cd01178 40 QDGEAQWEAEATIDKEK--SH-QNHLVVE-----------------------VPPYHNKHVAAPVQVQFYVVNG 87 (101)
T ss_pred CCCccceEEEEEeChHh--ce-eeeEEEe-----------------------cCCCCCCCcCCceEEEEEEEcC
Confidence 34455899988888754 46 7999998 3333444566799999999764
No 7
>PF06448 DUF1081: Domain of Unknown Function (DUF1081); InterPro: IPR009454 This entry represents a conserved open beta-sheet domain found in several lipid transport proteins, including vitellogenin and apolipoprotein B-100 []. Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: heavy chain lipovitellin (lipovitellin-1), phosvitin, light chain lipovitellin (lipovitellin-2), and a von Willebrand factor type D domain (YGP40) [, ]. In vitellinogen, this domain is often found as part of the lipovitellin-1 peptide product. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport
Probab=17.29 E-value=4.2e+02 Score=22.00 Aligned_cols=30 Identities=13% Similarity=0.344 Sum_probs=23.2
Q ss_pred cccCCCCcEEEEEEEEEeC--CEEEEEEEEEE
Q 021267 142 KDYPNGTPVQISIDVTKKK--QKLRLDGIIRT 171 (315)
Q Consensus 142 ~~~~~~spV~Vsl~l~r~~--~~l~V~G~I~g 171 (315)
.-||+.+|.++.+.+.+.+ ..+.+.+....
T Consensus 37 p~fPL~Gp~~f~l~Lektd~~~~Y~~~~~~~~ 68 (118)
T PF06448_consen 37 PYFPLSGPAKFSLELEKTDSVKGYHFKATYEL 68 (118)
T ss_pred cccccCCCEEEEEEEEeCCCeeEEEEEEEEcc
Confidence 5678999999999999987 56666655443
No 8
>PRK13130 H/ACA RNA-protein complex component Nop10p; Reviewed
Probab=17.19 E-value=84 Score=23.23 Aligned_cols=11 Identities=45% Similarity=0.921 Sum_probs=6.7
Q ss_pred CCCcccCCCCC
Q 021267 275 KGICLKCGTNL 285 (315)
Q Consensus 275 kGlCp~cG~nl 285 (315)
+..||.||...
T Consensus 17 k~~CP~CG~~t 27 (56)
T PRK13130 17 KEICPVCGGKT 27 (56)
T ss_pred cccCcCCCCCC
Confidence 34577777654
No 9
>cd00602 IPT_TF IPT domain of eukaryotic transcription factors NF-kappaB/Rel, nuclear factor of activated Tcells (NFAT), and recombination signal J-kappa binding protein (RBP-Jkappa). The IPT domains in these proteins are involved in DNA binding. Most NF-kappaB/Rel proteins form homo- and heterodimers, while NFAT proteins are largely monomeric (with TonEBP being an exception). While the majority of sequence-specific DNA binding elements are found in the N-terminal domain, several are found in the IPT domain in loops adjacent to, and including, the linker region.
Probab=15.10 E-value=2.8e+02 Score=22.66 Aligned_cols=49 Identities=14% Similarity=0.375 Sum_probs=34.2
Q ss_pred cCCCCceeEEeecCCccccceEEeeecccCCCCCChhhhhhhhhcccccccccccccCCCCcEEEEEEEEEeCCE
Q 021267 88 AGSPWEGAIIYKRNPSITHLEYCTTLERLGLGKLSTEVSRSRASAMGLRVTKAVKDYPNGTPVQISIDVTKKKQK 162 (315)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~y~~~l~~l~~g~~s~~~s~~~~~~~~~~~~~~v~~~~~~spV~Vsl~l~r~~~~ 162 (315)
.+..||....|+++-. | -||+-++ +....+-....||+|.+.+.|..++
T Consensus 41 g~~~WE~~~~f~~~dv--~-q~aiv~~-----------------------tP~y~~~~i~~pV~V~i~L~r~~~~ 89 (101)
T cd00602 41 GETVWEAEAMFRQEDV--R-QVAIVFK-----------------------TPPYHNKWITRPVQVPIQLVRPDDR 89 (101)
T ss_pred CCCeEEEEEEECHHHc--e-EeEEEec-----------------------CCCcCCCCccccEEEEEEEEeCCCC
Confidence 5568999999999875 2 2788777 2222233446799999999987443
No 10
>COG3217 Uncharacterized Fe-S protein [General function prediction only]
Probab=14.60 E-value=1.9e+02 Score=27.93 Aligned_cols=40 Identities=15% Similarity=0.060 Sum_probs=26.2
Q ss_pred EEEEEEEEE--eCCEEEEEEEEEEEEEeecccccccccccee
Q 021267 150 VQISIDVTK--KKQKLRLDGIIRTVLTLGCNRCGEPAAQSVF 189 (315)
Q Consensus 150 V~Vsl~l~r--~~~~l~V~G~I~g~V~l~C~RCLePv~~~I~ 189 (315)
+-+.+.-.. +....+--|.|+..+.-+|+||--+-.-+-.
T Consensus 173 lvv~ge~a~aEd~w~~i~IG~v~F~~vkPC~RCi~Ttvd~~t 214 (270)
T COG3217 173 LVVEGEDAFAEDSWKSIRIGGVRFDVVKPCSRCIFTTVDPDT 214 (270)
T ss_pred eEEeecccccccCceEEEEccEEEEEeccchhcceeeECCcc
Confidence 444444333 3455566688999999999999876544333
Done!