Query 021267
Match_columns 315
No_of_seqs 188 out of 1084
Neff 5.5
Searched_HMMs 29240
Date Mon Mar 25 15:11:26 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021267.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/021267hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2v1l_A Hypothetical protein; p 13.8 1.2E+02 0.004 25.5 3.0 44 74-118 41-85 (148)
2 2apo_B Ribosome biogenesis pro 13.8 77 0.0026 22.7 1.6 10 276-285 19-28 (60)
3 2w56_A VC0508; unknown functio 13.7 1.2E+02 0.004 25.5 2.9 44 74-118 41-85 (147)
4 2nx6_A Nematocyst outer WALL a 13.5 59 0.002 19.3 0.8 17 263-279 4-20 (27)
5 1imh_C NF-AT5, tonebp, nuclear 13.5 2.1E+02 0.0072 26.4 4.9 44 89-158 222-265 (281)
6 1u36_A DNA-binding, nuclear fa 12.8 1.1E+02 0.0037 24.3 2.4 47 88-159 44-90 (106)
7 1ikn_C P50D, protein (NF-kappa 12.6 1.1E+02 0.0039 24.7 2.5 47 88-159 44-90 (119)
8 3owt_C Regulatory protein SIR3 10.6 81 0.0028 18.7 0.7 13 301-313 10-22 (27)
9 1l8d_A DNA double-strand break 9.8 58 0.002 25.1 -0.2 12 275-286 47-58 (112)
10 2c1m_B Nucleoporin 50 kDa; pro 9.4 91 0.0031 21.2 0.7 15 75-90 12-26 (46)
No 1
>2v1l_A Hypothetical protein; pathogenicity island, unknown function; 2.13A {Vibrio cholerae}
Probab=13.85 E-value=1.2e+02 Score=25.46 Aligned_cols=44 Identities=25% Similarity=0.311 Sum_probs=31.9
Q ss_pred ccCCcccchhhhhhcCC-CCceeEEeecCCccccceEEeeecccCC
Q 021267 74 ESYDWEDQEDVEEDAGS-PWEGAIIYKRNPSITHLEYCTTLERLGL 118 (315)
Q Consensus 74 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~y~~~l~~l~~ 118 (315)
+.+|.-|-.=-.|++|- |.|=++. .|+.+.|++.|.|++--.|-
T Consensus 41 ltlNFRD~~YSae~GGfHPVEIrl~-~~~~~~W~i~YITDFsY~G~ 85 (148)
T 2v1l_A 41 VVMNFRDSSYSAEDGGFHPVEIALS-QSSDGQWCIEYITDFAYVGN 85 (148)
T ss_dssp EEEEEECTTCBTTTBCCCCEEEEEE-ECSSSCEEEEEEEEEEEC--
T ss_pred EEEEcCCCCcCcccCCcCCEEEEEE-ecCCCcEEEEEEEeecccCC
Confidence 34455554333677886 9998777 79999999999999986653
No 2
>2apo_B Ribosome biogenesis protein NOP10; protein-protein complex, box H/ACA, snoRNP, pseudouridine synthase, RNA modification; 1.95A {Methanocaldococcus jannaschii} SCOP: g.41.16.1 PDB: 2aqc_A
Probab=13.76 E-value=77 Score=22.71 Aligned_cols=10 Identities=50% Similarity=1.102 Sum_probs=6.2
Q ss_pred CCcccCCCCC
Q 021267 276 GICLKCGTNL 285 (315)
Q Consensus 276 GlCp~cG~nl 285 (315)
..||.||...
T Consensus 19 ~~CP~CG~~T 28 (60)
T 2apo_B 19 EICPKCGEKT 28 (60)
T ss_dssp SBCSSSCSBC
T ss_pred ccCcCCCCcC
Confidence 4577777653
No 3
>2w56_A VC0508; unknown function; 1.90A {Vibrio cholerae} PDB: 2w56_B
Probab=13.66 E-value=1.2e+02 Score=25.45 Aligned_cols=44 Identities=23% Similarity=0.370 Sum_probs=31.8
Q ss_pred ccCCcccchhhhhhcCC-CCceeEEeecCCccccceEEeeecccCC
Q 021267 74 ESYDWEDQEDVEEDAGS-PWEGAIIYKRNPSITHLEYCTTLERLGL 118 (315)
Q Consensus 74 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~y~~~l~~l~~ 118 (315)
+.+|.-|-.=-.|++|- |.|=++. .|+.+.|++.|.|++--.|-
T Consensus 41 ltlNFRD~~YSae~GGfHPVEIrl~-~~~~~~W~i~YITDFsY~G~ 85 (147)
T 2w56_A 41 LVFNFRDKSYSADEGGFHPVEMAIC-QTSTGEWSIEYITDFAYMGN 85 (147)
T ss_dssp EEEEEECTTCBTTTBCSCCEEEEEE-ECTTSCEEEEEEEEEEEC--
T ss_pred EEEEcCCCCcCcccCCcCCEEEEEE-ecCCCcEEEEEEEeecccCC
Confidence 34455554333577786 9998777 79999999999999986664
No 4
>2nx6_A Nematocyst outer WALL antigen; disulfide rich, turns, structural protein; NMR {Hydra vulgaris}
Probab=13.55 E-value=59 Score=19.30 Aligned_cols=17 Identities=29% Similarity=0.577 Sum_probs=12.5
Q ss_pred hCCCcccCCCCCCCCcc
Q 021267 263 EITINVICDPSCKGICL 279 (315)
Q Consensus 263 aLPm~pLC~edCkGlCp 279 (315)
+-|..|-|++.|...|.
T Consensus 4 scpqfpscspscapqcs 20 (27)
T 2nx6_A 4 SCPQFPSCSPSCAPQCS 20 (27)
T ss_dssp SSTTCTTCCGGGTTTTC
T ss_pred cCCCCCCCCCccchHHH
Confidence 45788889988875554
No 5
>1imh_C NF-AT5, tonebp, nuclear factor of activated T cells 5; beta barrel, protein-DNA complex, double helix, DNA encirclement, transcription/DNA complex; 2.86A {Homo sapiens} SCOP: b.1.18.1 b.2.5.3
Probab=13.51 E-value=2.1e+02 Score=26.40 Aligned_cols=44 Identities=16% Similarity=0.252 Sum_probs=31.9
Q ss_pred CCCCceeEEeecCCccccceEEeeecccCCCCCChhhhhhhhhcccccccccccccCCCCcEEEEEEEEE
Q 021267 89 GSPWEGAIIYKRNPSITHLEYCTTLERLGLGKLSTEVSRSRASAMGLRVTKAVKDYPNGTPVQISIDVTK 158 (315)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~y~~~l~~l~~g~~s~~~s~~~~~~~~~~~~~~v~~~~~~spV~Vsl~l~r 158 (315)
|..||+..-+.+ ...| .|++-++ +..-.+-....||.|.+.+.+
T Consensus 222 ~~~WE~~~~f~~--~dvh-Q~aIvf~-----------------------tPpY~~~~I~~pV~V~iqL~r 265 (281)
T 1imh_C 222 ENSWKSEAEIDM--ELFH-QNHLIVK-----------------------VPPYHDQHITLPVSVGIYVVT 265 (281)
T ss_dssp TCSCEEEECBCG--GGCC-SSEEEEE-----------------------CCCCSCTTCSSCEEEEEEEEE
T ss_pred CCceEEeEEeCh--hhcc-cceEEEE-----------------------CCCCccCccCCCeEEEEEEEe
Confidence 468999777765 3557 8999998 333334455679999999987
No 6
>1u36_A DNA-binding, nuclear factor NF-kappa-B P105 subunit; transcription factor, NF-KB, dimerization domain, intertwined folding; 1.89A {Mus musculus} SCOP: b.1.18.1 PDB: 1u3z_A 1u3y_A 3jv4_B 1bfs_A 1u3j_A 1u42_A 1u41_A 1nfi_B
Probab=12.80 E-value=1.1e+02 Score=24.27 Aligned_cols=47 Identities=21% Similarity=0.399 Sum_probs=28.7
Q ss_pred cCCCCceeEEeecCCccccceEEeeecccCCCCCChhhhhhhhhcccccccccccccCCCCcEEEEEEEEEe
Q 021267 88 AGSPWEGAIIYKRNPSITHLEYCTTLERLGLGKLSTEVSRSRASAMGLRVTKAVKDYPNGTPVQISIDVTKK 159 (315)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~y~~~l~~l~~g~~s~~~s~~~~~~~~~~~~~~v~~~~~~spV~Vsl~l~r~ 159 (315)
.|..||+..-+.+ .-.|--|++-++ +..-.+.....||.|.+.+.|.
T Consensus 44 ~g~~WE~~~~f~~--~dvh~Q~aIvf~-----------------------tPpY~~~~I~~pV~V~~~l~r~ 90 (106)
T 1u36_A 44 NGGVWEGFGDFSP--TDVHRQFAICFK-----------------------TPKYKDVNITKPASVFVQLRRK 90 (106)
T ss_dssp ---CEEEECBCCG--GGEETTTEEEEE-----------------------CCCCSCTTCSSCEEEEEEEECT
T ss_pred CCCceEEeeecCH--HHcccceEEEEE-----------------------CCCCCCCccCCCEEEEEEEEcC
Confidence 3468998766654 234445777777 2222334456799999999874
No 7
>1ikn_C P50D, protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Mus musculus} SCOP: b.1.18.1
Probab=12.62 E-value=1.1e+02 Score=24.65 Aligned_cols=47 Identities=21% Similarity=0.396 Sum_probs=29.7
Q ss_pred cCCCCceeEEeecCCccccceEEeeecccCCCCCChhhhhhhhhcccccccccccccCCCCcEEEEEEEEEe
Q 021267 88 AGSPWEGAIIYKRNPSITHLEYCTTLERLGLGKLSTEVSRSRASAMGLRVTKAVKDYPNGTPVQISIDVTKK 159 (315)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~y~~~l~~l~~g~~s~~~s~~~~~~~~~~~~~~v~~~~~~spV~Vsl~l~r~ 159 (315)
.|..||....+... -.|--|++-++ +..-.+.....||.|.+.+.+.
T Consensus 44 ~g~~WE~~~~f~~~--dvh~Q~aIvf~-----------------------tPpY~~~~I~~pV~V~i~L~r~ 90 (119)
T 1ikn_C 44 NGGVWEGFGDFSPT--DVHRQFAIVFK-----------------------TPKYKDVNITKPASVFVQLRRK 90 (119)
T ss_dssp TSCEEEEECCCCGG--GEETTTEEEEE-----------------------CCCCSCTTCSSCEEEEEEEEET
T ss_pred CCCceEEeEEeChh--hccccceEEEE-----------------------CCCCCCCCcCCCEEEEEEEEcC
Confidence 34689987766442 34545777777 2222334456799999988764
No 8
>3owt_C Regulatory protein SIR3; RCT domain, protein binding; 2.00A {Saccharomyces cerevisiae}
Probab=10.62 E-value=81 Score=18.70 Aligned_cols=13 Identities=23% Similarity=0.611 Sum_probs=10.8
Q ss_pred CCHHHHhchhhhh
Q 021267 301 TYGPLGNLRKQME 313 (315)
Q Consensus 301 rfA~Lk~LKk~~~ 313 (315)
.||.|.+||++-+
T Consensus 10 dfatlsklkkkyq 22 (27)
T 3owt_C 10 DFATLSKLKKKYQ 22 (27)
T ss_pred ehHHHHHHHhhhe
Confidence 4999999998754
No 9
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=9.82 E-value=58 Score=25.09 Aligned_cols=12 Identities=50% Similarity=1.068 Sum_probs=9.3
Q ss_pred CCCcccCCCCCC
Q 021267 275 KGICLKCGTNLN 286 (315)
Q Consensus 275 kGlCp~cG~nln 286 (315)
.|.||.||..+.
T Consensus 47 g~~CPvCgs~l~ 58 (112)
T 1l8d_A 47 KGKCPVCGRELT 58 (112)
T ss_dssp SEECTTTCCEEC
T ss_pred CCCCCCCCCcCC
Confidence 367999998764
No 10
>2c1m_B Nucleoporin 50 kDa; protein transport/membrane protein, nuclear transport/complex, importin-alpha, nucleoporin NUP50; 2.2A {Mus musculus}
Probab=9.41 E-value=91 Score=21.21 Aligned_cols=15 Identities=20% Similarity=0.875 Sum_probs=8.6
Q ss_pred cCCcccchhhhhhcCC
Q 021267 75 SYDWEDQEDVEEDAGS 90 (315)
Q Consensus 75 ~~~~~~~~~~~~~~~~ 90 (315)
.-||++++| .|+.|.
T Consensus 12 ~dn~~~e~e-~ee~g~ 26 (46)
T 2c1m_B 12 DRNWDEEDE-VEEMGT 26 (46)
T ss_dssp TTTSSCCCC-CCCCCC
T ss_pred ccccccccc-cccCCc
Confidence 348987665 444443
Done!