Query 021267
Match_columns 315
No_of_seqs 188 out of 1084
Neff 5.5
Searched_HMMs 13730
Date Mon Mar 25 15:11:33 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021267.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/021267hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1u36a_ b.1.18.1 (A:) p50 subu 33.9 10 0.00075 28.3 2.4 50 86-160 40-89 (104)
2 d1a3qa1 b.1.18.1 (A:227-327) p 24.4 26 0.0019 25.8 3.2 46 91-161 43-88 (101)
3 d2bi6h1 g.3.12.1 (H:8-31) Brom 22.5 21 0.0016 19.6 1.7 15 272-286 5-19 (26)
4 d1pvma3 g.41.13.1 (A:143-178) 16.0 23 0.0017 20.9 0.9 10 276-285 2-11 (36)
5 d1imhc1 b.1.18.1 (C:368-468) T 14.7 1.3E+02 0.0094 21.6 5.2 47 86-158 39-85 (101)
6 d2fiya1 e.59.1.1 (A:19-308) Fd 10.9 85 0.0062 26.8 3.6 31 253-283 142-172 (290)
7 d1wf5a1 b.1.2.1 (A:8-115) Side 9.7 1.8E+02 0.013 19.5 4.6 26 73-102 28-53 (108)
8 d1ut1a_ b.2.3.6 (A:) DraA/Afim 9.2 1E+02 0.0073 23.7 3.0 39 77-115 93-135 (140)
9 d1kf6b2 d.15.4.2 (B:1-105) Fum 8.6 59 0.0043 23.7 1.3 38 248-288 35-72 (105)
10 d1cl4a_ g.40.1.1 (A:) Nucleoca 8.2 65 0.0047 18.9 1.1 11 275-285 2-12 (32)
No 1
>d1u36a_ b.1.18.1 (A:) p50 subunit of NF-kappa B transcription factor {Human (Homo sapiens) [TaxId: 9606]}
Probab=33.85 E-value=10 Score=28.33 Aligned_cols=50 Identities=22% Similarity=0.418 Sum_probs=31.6
Q ss_pred hhcCCCCceeEEeecCCccccceEEeeecccCCCCCChhhhhhhhhcccccccccccccCCCCcEEEEEEEEEeC
Q 021267 86 EDAGSPWEGAIIYKRNPSITHLEYCTTLERLGLGKLSTEVSRSRASAMGLRVTKAVKDYPNGTPVQISIDVTKKK 160 (315)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~y~~~l~~l~~g~~s~~~s~~~~~~~~~~~~~~v~~~~~~spV~Vsl~l~r~~ 160 (315)
.+.|.+||+..-+.+ ...|-.|++-++ +..-.+.....||+|.+.+.|..
T Consensus 40 ~~~~~~WE~~~~f~~--~dvh~Q~aIvf~-----------------------tPpY~~~~I~~pV~V~i~l~r~s 89 (104)
T d1u36a_ 40 EENGGVWEGFGDFSP--TDVHRQFAICFK-----------------------TPKYKDVNITKPASVFVQLRRKS 89 (104)
T ss_dssp C----CEEEECBCCG--GGEETTTEEEEE-----------------------CCCCSCTTCSSCEEEEEEEECTT
T ss_pred CCCCCceEEEEEECh--hhcccceEEEEE-----------------------CCCCCCCccCCcEEEEEEEEeCC
Confidence 445679998666555 355667788887 33334456677999999998743
No 2
>d1a3qa1 b.1.18.1 (A:227-327) p52 subunit of NF-kappa B (NFKB) {Human (Homo sapiens) [TaxId: 9606]}
Probab=24.37 E-value=26 Score=25.79 Aligned_cols=46 Identities=15% Similarity=0.320 Sum_probs=31.5
Q ss_pred CCceeEEeecCCccccceEEeeecccCCCCCChhhhhhhhhcccccccccccccCCCCcEEEEEEEEEeCC
Q 021267 91 PWEGAIIYKRNPSITHLEYCTTLERLGLGKLSTEVSRSRASAMGLRVTKAVKDYPNGTPVQISIDVTKKKQ 161 (315)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~y~~~l~~l~~g~~s~~~s~~~~~~~~~~~~~~v~~~~~~spV~Vsl~l~r~~~ 161 (315)
.||+..-+.+ ...|--|++-++ +..-.+.....||+|.+.+.|.++
T Consensus 43 ~WE~~~~f~~--~dvh~q~aIvfk-----------------------tPpY~~~~I~~pV~V~i~l~r~sd 88 (101)
T d1a3qa1 43 GWQAFGDFSP--TDVHKQYAIVFR-----------------------TPPYHKMKIERPVTVFLQLKRKRG 88 (101)
T ss_dssp CEEEECBCCG--GGEETTTEEEEE-----------------------CCCCSCTTCSSCEEEEEEEEETTT
T ss_pred CCEEEeEeCH--HHcccceEEEEE-----------------------CCCCCCcccCCcEEEEEEEEECCC
Confidence 4998666655 356777788777 333344556679999999998543
No 3
>d2bi6h1 g.3.12.1 (H:8-31) Bromelain inhibitor VI (cysteine protease inhibitor) {Pineapple (Ananas comosus) [TaxId: 4615]}
Probab=22.46 E-value=21 Score=19.64 Aligned_cols=15 Identities=27% Similarity=0.959 Sum_probs=11.3
Q ss_pred CCCCCCcccCCCCCC
Q 021267 272 PSCKGICLKCGTNLN 286 (315)
Q Consensus 272 edCkGlCp~cG~nln 286 (315)
.+|.|.|..|-+.+.
T Consensus 5 sdcpgfcktckaefg 19 (26)
T d2bi6h1 5 SDCPGFCKTCKAEFG 19 (26)
T ss_dssp SSCCTTCSSBCCBTT
T ss_pred ccCchHHHHHHHHhC
Confidence 378999998876554
No 4
>d1pvma3 g.41.13.1 (A:143-178) Hypothetical protein Ta0289 C-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]}
Probab=16.00 E-value=23 Score=20.91 Aligned_cols=10 Identities=40% Similarity=1.135 Sum_probs=7.6
Q ss_pred CCcccCCCCC
Q 021267 276 GICLKCGTNL 285 (315)
Q Consensus 276 GlCp~cG~nl 285 (315)
-+||.||...
T Consensus 2 hlcpkcgvgv 11 (36)
T d1pvma3 2 HLCPKCGVGV 11 (36)
T ss_dssp CBCTTTSSSB
T ss_pred ccCCccCceE
Confidence 4799998753
No 5
>d1imhc1 b.1.18.1 (C:368-468) T-cell transcription factor NFAT5 (TONEBP) {Human (Homo sapiens) [TaxId: 9606]}
Probab=14.66 E-value=1.3e+02 Score=21.62 Aligned_cols=47 Identities=13% Similarity=0.130 Sum_probs=28.9
Q ss_pred hhcCCCCceeEEeecCCccccceEEeeecccCCCCCChhhhhhhhhcccccccccccccCCCCcEEEEEEEEE
Q 021267 86 EDAGSPWEGAIIYKRNPSITHLEYCTTLERLGLGKLSTEVSRSRASAMGLRVTKAVKDYPNGTPVQISIDVTK 158 (315)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~y~~~l~~l~~g~~s~~~s~~~~~~~~~~~~~~v~~~~~~spV~Vsl~l~r 158 (315)
++++..||+..-+.++-. +|. ++-++ +..-.+.....||.|.+.+.|
T Consensus 39 ~~~~~~WE~~~~f~~~~v-h~q--aiv~k-----------------------tPpY~~~~I~~pV~V~~~L~r 85 (101)
T d1imhc1 39 VSDENSWKSEAEIDMELF-HQN--HLIVK-----------------------VPPYHDQHITLPVSVGIYVVT 85 (101)
T ss_dssp SCTTCSCEEEECBCGGGC-CSS--EEEEE-----------------------CCCCSCTTCSSCEEEEEEEEE
T ss_pred cCCCcceEEEEEEChhhe-eee--eEEEe-----------------------CCCccCcccCceEEEEEEEEe
Confidence 345668999888876442 232 34444 122223355679999999988
No 6
>d2fiya1 e.59.1.1 (A:19-308) FdhE homolog PA4809 {Pseudomonas aeruginosa [TaxId: 287]}
Probab=10.87 E-value=85 Score=26.79 Aligned_cols=31 Identities=13% Similarity=0.348 Sum_probs=23.4
Q ss_pred hHHHHHHHHhhCCCcccCCCCCCCCcccCCC
Q 021267 253 SKNIRDMVHLEITINVICDPSCKGICLKCGT 283 (315)
Q Consensus 253 ~~lV~DeIlLaLPm~pLC~edCkGlCp~cG~ 283 (315)
.++++..+...++...+-..+=+|.||.||.
T Consensus 142 Lq~~~a~~A~~l~~~~~~~~~~~~~CPvCGs 172 (290)
T d2fiya1 142 LQVAWSHWLLGLEEGAVVETESRTLCPACGS 172 (290)
T ss_dssp HHHHHHHHHHTCCTTCSCCCTTCSSCTTTCC
T ss_pred HHHHHHHHHhccCccccCCcccCCcCCCCCC
Confidence 3566777788888777666556789999986
No 7
>d1wf5a1 b.1.2.1 (A:8-115) Sidekick 2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=9.73 E-value=1.8e+02 Score=19.47 Aligned_cols=26 Identities=19% Similarity=0.262 Sum_probs=19.4
Q ss_pred cccCCcccchhhhhhcCCCCceeEEeecCC
Q 021267 73 TESYDWEDQEDVEEDAGSPWEGAIIYKRNP 102 (315)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (315)
.+.+.|.. ..+.|+|..|.+|+.|..
T Consensus 28 sv~l~W~~----P~~~~~~I~~Y~v~~~~~ 53 (108)
T d1wf5a1 28 AINLTWTK----PFDGNSPLIRYILEMSEN 53 (108)
T ss_dssp EEEEECCC----CCCCSSCEEEEEEEEECT
T ss_pred EEEEEEEC----CCCCCCccEEEEEEEEec
Confidence 36789986 456788999999966543
No 8
>d1ut1a_ b.2.3.6 (A:) DraA/Afimbrial adhesin Afa-III {Escherichia coli [TaxId: 562]}
Probab=9.21 E-value=1e+02 Score=23.74 Aligned_cols=39 Identities=23% Similarity=0.371 Sum_probs=28.8
Q ss_pred Ccccchhhh-hhcCCCCceeEEeecCCccccc---eEEeeecc
Q 021267 77 DWEDQEDVE-EDAGSPWEGAIIYKRNPSITHL---EYCTTLER 115 (315)
Q Consensus 77 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~---~y~~~l~~ 115 (315)
+|.-+-+.. -..+-||+|.|..+=+.-|+|. .|.++|++
T Consensus 93 ~Wt~d~gv~yr~~~G~W~G~i~i~V~GdQt~~ptg~YTLnL~G 135 (140)
T d1ut1a_ 93 AWTTDNGVFYKNDVGSWGGIIGIYVDGQQTNTPPGNYTLTLTG 135 (140)
T ss_dssp CEEEETTEEEESSCSCCEEEEEEEESSCCTTCCSEEEEEEEEE
T ss_pred CeeecCCEEEecCCCCcccEEEEEEeCCcccCCCccEEEEecC
Confidence 676655542 3445699999999988888874 78888873
No 9
>d1kf6b2 d.15.4.2 (B:1-105) Fumarate reductase iron-sulfur protein, N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=8.56 E-value=59 Score=23.68 Aligned_cols=38 Identities=24% Similarity=0.443 Sum_probs=30.1
Q ss_pred cccchhHHHHHHHHhhCCCcccCCCCCCCCcccCCCCCCCC
Q 021267 248 KEIDISKNIRDMVHLEITINVICDPSCKGICLKCGTNLNTS 288 (315)
Q Consensus 248 ~eIDL~~lV~DeIlLaLPm~pLC~edCkGlCp~cG~nln~~ 288 (315)
..+|+...|.+++--+|-++--|.. |.|..|+...|..
T Consensus 35 tvLd~L~~Ik~~~d~sLsfr~sCr~---giCGsCam~ING~ 72 (105)
T d1kf6b2 35 SLLDALGYIKDNLAPDLSYRWSCRM---AICGSCGMMVNNV 72 (105)
T ss_dssp BHHHHHHHHHHHTCTTCCCCCCCSS---SSSCCCEEEETTE
T ss_pred cHHHHHHHHHHhcCCcceEEeccCC---CCCCCCeEEECCc
Confidence 4688888899998888888877764 7888888777754
No 10
>d1cl4a_ g.40.1.1 (A:) Nucleocapsid protein from mason-pfizer monkey virus (MPMV) {Mason-pfizer monkey virus [TaxId: 11855]}
Probab=8.25 E-value=65 Score=18.86 Aligned_cols=11 Identities=27% Similarity=0.884 Sum_probs=8.0
Q ss_pred CCCcccCCCCC
Q 021267 275 KGICLKCGTNL 285 (315)
Q Consensus 275 kGlCp~cG~nl 285 (315)
.|+||.|.+..
T Consensus 2 P~lCPrC~kG~ 12 (32)
T d1cl4a_ 2 PGLCPRCKRGK 12 (32)
T ss_dssp CCSCSSCSSCS
T ss_pred CccCccccCcc
Confidence 37999996543
Done!