Query 021270
Match_columns 315
No_of_seqs 160 out of 459
Neff 5.5
Searched_HMMs 29240
Date Mon Mar 25 15:14:16 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021270.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/021270hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4hyg_A Putative uncharacterize 99.9 1.3E-27 4.5E-32 223.3 10.8 217 57-300 44-283 (301)
2 2kr6_A Presenilin-1; protease, 96.1 0.0051 1.7E-07 53.7 4.6 55 233-293 88-145 (176)
3 3pp4_P B-lymphocyte antigen CD 18.3 27 0.00093 20.9 0.1 6 1-6 2-7 (25)
4 3dh4_A Sodium/glucose cotransp 8.5 4.3E+02 0.015 25.7 5.5 21 30-50 457-477 (530)
5 2xq2_A Sodium/glucose cotransp 5.8 1.8E+03 0.061 21.5 9.1 44 69-114 533-576 (593)
6 2a9h_A Voltage-gated potassium 3.8 8.3E+02 0.028 19.8 3.7 9 233-241 97-105 (155)
7 1iq6_A (R)-hydratase, (R)-spec 3.3 4.1E+02 0.014 19.8 1.3 14 235-248 46-59 (134)
8 1h0z_A Serine protease inhibit 3.3 3.4E+02 0.012 19.8 0.8 9 306-314 26-34 (68)
9 2b9s_B DNA topoisomerase I-lik 3.1 4.8E+02 0.016 18.7 1.4 14 243-256 25-38 (62)
10 3arc_J Photosystem II reaction 2.8 7.1E+02 0.024 16.3 1.8 14 187-200 20-33 (40)
No 1
>4hyg_A Putative uncharacterized protein; protease, membrane protein; 3.32A {Methanoculleus marisnigri JR1} PDB: 4hyc_A 4hyd_A
Probab=99.94 E-value=1.3e-27 Score=223.30 Aligned_cols=217 Identities=21% Similarity=0.236 Sum_probs=144.6
Q ss_pred ccccchhhhHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCcccCceeeeecccccceee
Q 021270 57 NEHAMRFPFVGSAMLLSLFLLFKFLSKDLVNAVLTCYFFVLGIIALSATILPAVKRFLPNHWNEDLIIWHFPYFRSLEIE 136 (315)
Q Consensus 57 ~~~A~~fPv~aS~~L~~Ly~l~k~~~~~~v~~ll~~yf~~~g~~~l~~~l~~~~~~~~p~~~~~~~~~~~~p~~~~~~~~ 136 (315)
..+...+-..--.+-..+-+++|+=-+|.++.++. +.......-.+.+++......
T Consensus 44 ~sNs~~YI~~ILvfT~~mL~l~k~~~~~ii~~ii~----~~i~~~~~YVf~~l~~~~~~~-------------------- 99 (301)
T 4hyg_A 44 VANPLIFIGMLLAFTLVLLVLLRTGGRRFIAAFIG----FALFMTFLYIFGALSLLALGP-------------------- 99 (301)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHTCCTTHHHHHHH----HHHHHHHHHHHHHHHHHTTCS--------------------
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHH----HHHHHHHHHHHHHHHHHhhcc--------------------
Confidence 33445553322222333446788755666555433 333344455555555432211
Q ss_pred eehhhHHhhhhHHHhhhhhhcccchhHhhHHHHHHHHHhhh--heecCchhhHHHHHHHHHhhhheeeeecceeeeeccc
Q 021270 137 FTRSQIIAAIPGTFFCAWYASQKHWLANNTLGLAFCIQGIE--MLSLGSFKTGAILLAGLFVYDIFWVFFTPVMVSVAKS 214 (315)
Q Consensus 137 ~t~~~l~~~~~s~~~~~~~~~~~~W~l~nilgi~~~~~~i~--~i~l~s~k~~~ilL~~lf~YDif~VF~t~vMv~VA~~ 214 (315)
-+.....+.+.+.+++..++.+++|+.+|+.|+++|.++.. .++++.+ .+.+||+++.+||.+|||+|++|+++|++
T Consensus 100 ~~~~~~~a~~~a~~~~~ll~~ypeWyvid~~Gi~~~aG~aalFGISl~~~-paiiLL~~LavYDaISVy~TkHMvtLAeg 178 (301)
T 4hyg_A 100 TTAAAAGTLIGAVAVTALLYLYPEWYVIDILGVLISAGVASIFGISLEPL-PVLVLLVLLAVYDAISVYRTKHMITLAEG 178 (301)
T ss_dssp CHHHHHHHHHHHHHHHHHHHTCCCSSHHHHHHHHHHHHHHHHHHHSSCHH-HHHHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred chhhHHHHHHHHHHHHHHHHhcccHHHhhHHHHHHHhhHHHHHhhccchH-HHHHHHHHHHHHHhhhccCchHHHHHHHh
Confidence 01123456666777788888999999999999999998765 4555777 89999999999999999999999999999
Q ss_pred ---CCCCEEEEeccC--------------CCCCCceeccCCCeechhHHHHHHHHhhhccC----CCCcchhHhHHHHHH
Q 021270 215 ---FDAPIKLLFPTR--------------DTARPFSMLGLGDIVIPGIFVALALRFDVSRG----KGSRYFKSAFLGYTV 273 (315)
Q Consensus 215 ---~~~Pikl~~P~~--------------~~~~~~s~LGlGDIviPGlfia~~lRfD~~~~----~~~~YF~~s~~gY~~ 273 (315)
.|.|+++++|+. +.+|+..++|+||+++|+++++.+.|||.++. .+.+ +..+++|+.+
T Consensus 179 vmdlk~PilfViP~~~~ys~~~~~~~~~~~~er~a~~iGlGD~viP~ilVvSa~~F~~~~~~~g~~~lP-algA~~Gt~~ 257 (301)
T 4hyg_A 179 VLETKAPIMVVVPKRADYSFRKEGLNISEGEERGAFVMGMGDLIMPSILVVSSHVFVDAPAVLWTLSAP-TLGAMVGSLV 257 (301)
T ss_dssp C--------------------------------CHHHHHHHHHHHHHHHHHHHHCC---------CCCS-CHHHHHHHHH
T ss_pred hhccCCceEEEEecCCCccccccccccccccccceeEecCcchhHHHHHHHHHHHHcccccccccccch-HHHHHHHHHH
Confidence 789999999982 23578889999999999999999999997544 1234 7899999999
Q ss_pred HHHHHHHHHHHhcCCceeehheecccc
Q 021270 274 GLVLTIIVMNWFQAAQVTIACFFSFVF 300 (315)
Q Consensus 274 GL~~t~~~~~~~~~~QPALLYLVP~~l 300 (315)
|+.++..... .+++||+|.||+++++
T Consensus 258 Gl~vLl~~V~-~grpqaGLP~LN~GaI 283 (301)
T 4hyg_A 258 GLAVLLYFVN-KGNPQAGLPPLNGGAI 283 (301)
T ss_dssp HHHHHHHHHT-SSSCCCSHHHHHHHHH
T ss_pred HHHHHHHHHH-cCCCCCCCCccchHHH
Confidence 9999866222 7999999999999864
No 2
>2kr6_A Presenilin-1; protease, alternative splicing, alzheimer disease, amyloidos apoptosis, cell adhesion, disease mutation; NMR {Homo sapiens}
Probab=96.11 E-value=0.0051 Score=53.75 Aligned_cols=55 Identities=27% Similarity=0.434 Sum_probs=47.9
Q ss_pred eeccCCCeechhHHHHHHH--H-hhhccCCCCcchhHhHHHHHHHHHHHHHHHHHhcCCceeeh
Q 021270 233 SMLGLGDIVIPGIFVALAL--R-FDVSRGKGSRYFKSAFLGYTVGLVLTIIVMNWFQAAQVTIA 293 (315)
Q Consensus 233 s~LGlGDIviPGlfia~~l--R-fD~~~~~~~~YF~~s~~gY~~GL~~t~~~~~~~~~~QPALL 293 (315)
--|||||-|+=+++++-+. + .|. .=..+|++|..+||.+|...+.+++++-|||.
T Consensus 88 ikLGLGDFIFYSvLVgkAa~~~~~d~------~t~~ac~vaIL~GL~~TL~lLa~~~~aLPALP 145 (176)
T 2kr6_A 88 VKLGLGDFIFYSVLVGKASATASGDW------NTTIACFVAILIGLCLTLLLLAIFKKALPALP 145 (176)
T ss_dssp CSSCTTTHHHHHHHHHHHHHHSCCTT------TTHHHHHHHHHHHHHHHHHHHHHHTCSCSSSS
T ss_pred ccccccCeeehHHHHHHHHHhhccCH------HHHHHHHHHHHHHHHHHHHHHhhhcccCCCCc
Confidence 5699999999999999886 4 243 34689999999999999999999999999985
No 3
>3pp4_P B-lymphocyte antigen CD20; antibody FAB fragment IG-domain, cyclic peptide, antib antigen, immune system; 1.60A {Homo sapiens} PDB: 3bky_P 2osl_P
Probab=18.25 E-value=27 Score=20.94 Aligned_cols=6 Identities=50% Similarity=1.021 Sum_probs=3.7
Q ss_pred Ccchhh
Q 021270 1 MKNCER 6 (315)
Q Consensus 1 ~~~~~~ 6 (315)
|+||||
T Consensus 2 IynCE~ 7 (25)
T 3pp4_P 2 IYNCEP 7 (26)
T ss_dssp CCCCSC
T ss_pred cccccc
Confidence 466665
No 4
>3dh4_A Sodium/glucose cotransporter; membrane protein, symporter, sugar transport, SGLT, ION TRAN membrane, sodium transport, symport; HET: GAL; 2.70A {Vibrio parahaemolyticus}
Probab=8.52 E-value=4.3e+02 Score=25.71 Aligned_cols=21 Identities=5% Similarity=0.045 Sum_probs=12.4
Q ss_pred hHHHHHHHHhhhcccccCCCC
Q 021270 30 VILTACLTVYVGCYRSVKPTP 50 (315)
Q Consensus 30 li~~Av~~I~iGs~~sl~~~~ 50 (315)
.+..++...++.|...-++++
T Consensus 457 ~~~~~~i~~v~vSl~t~~~~~ 477 (530)
T 3dh4_A 457 TLLFTMVVIAFTSLSTSINDD 477 (530)
T ss_dssp HHHHHHHHHHHHHHTTCSSSS
T ss_pred HHHHHHHHHHHHHhhcCCCcc
Confidence 335566777777776544433
No 5
>2xq2_A Sodium/glucose cotransporter; transport protein, inverted repeats, LEUT-fold, galactose; 2.73A {Vibrio parahaemolyticus} PDB: 2xq2_B 2kpe_A
Probab=5.82 E-value=1.8e+03 Score=21.49 Aligned_cols=44 Identities=20% Similarity=0.283 Sum_probs=22.6
Q ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Q 021270 69 AMLLSLFLLFKFLSKDLVNAVLTCYFFVLGIIALSATILPAVKRFL 114 (315)
Q Consensus 69 ~~L~~Ly~l~k~~~~~~v~~ll~~yf~~~g~~~l~~~l~~~~~~~~ 114 (315)
+.+..+|..|.-..+-. ..+..+.-.+|+.+.--.++...+|..
T Consensus 533 ~~~~~~~~~f~~~~~~~--i~l~v~~~~~~~~~~~~~~~~~~~~~~ 576 (593)
T 2xq2_A 533 IVLAVLYTLFWVNADAE--ITLIIFGVMAGVIGTILLISYGIKKLI 576 (593)
T ss_dssp HHHHHHHHHHHHCTTTH--HHHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHhcchHH--HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45666777765444422 233444555666665555665555543
No 6
>2a9h_A Voltage-gated potassium channel; potassium channel, KCSA, structure, membrane protein, metal transport; HET: PCA; NMR {Streptomyces lividans} SCOP: f.14.1.1
Probab=3.76 E-value=8.3e+02 Score=19.76 Aligned_cols=9 Identities=33% Similarity=0.826 Sum_probs=6.9
Q ss_pred eeccCCCee
Q 021270 233 SMLGLGDIV 241 (315)
Q Consensus 233 s~LGlGDIv 241 (315)
+-.|+||++
T Consensus 97 tTVGYGDi~ 105 (155)
T 2a9h_A 97 TTVGYGDLY 105 (155)
T ss_dssp TTCCCSSSC
T ss_pred ecccCCCCC
Confidence 447999986
No 7
>1iq6_A (R)-hydratase, (R)-specific enoyl-COA hydratase; polyhydroxyalkanoate, aeromonas caviae, the hydratase 2 motif, lyase; 1.50A {Aeromonas punctata} SCOP: d.38.1.4
Probab=3.29 E-value=4.1e+02 Score=19.83 Aligned_cols=14 Identities=14% Similarity=0.427 Sum_probs=11.8
Q ss_pred ccCCCeechhHHHH
Q 021270 235 LGLGDIVIPGIFVA 248 (315)
Q Consensus 235 LGlGDIviPGlfia 248 (315)
-|+|+.+.||.+.+
T Consensus 46 ~g~~~~i~hG~~~~ 59 (134)
T 1iq6_A 46 TAFERPIVHGMLLA 59 (134)
T ss_dssp STTCSCBCCHHHHH
T ss_pred CCCCCceECHHHHH
Confidence 58999999998764
No 8
>1h0z_A Serine protease inhibitor kazal-type 5, contains hemofiltrate peptide HF6478, hemofiltrate...; serine proteinase inhibitor; NMR {Homo sapiens} SCOP: g.68.1.2
Probab=3.29 E-value=3.4e+02 Score=19.77 Aligned_cols=9 Identities=33% Similarity=0.519 Sum_probs=6.8
Q ss_pred ccccCcCCC
Q 021270 306 VPRNYSPIC 314 (315)
Q Consensus 306 ~~r~~~~~~ 314 (315)
=+|+|.|+|
T Consensus 26 C~~~y~PVC 34 (68)
T 1h0z_A 26 CTRENDPIQ 34 (68)
T ss_dssp CCCCSCCCB
T ss_pred CCCCCCccC
Confidence 467888887
No 9
>2b9s_B DNA topoisomerase I-like protein; vanadate complex, isomerase/DNA complex; HET: DNA; 2.27A {Leishmania donovani}
Probab=3.15 E-value=4.8e+02 Score=18.74 Aligned_cols=14 Identities=36% Similarity=0.420 Sum_probs=12.5
Q ss_pred hhHHHHHHHHhhhc
Q 021270 243 PGIFVALALRFDVS 256 (315)
Q Consensus 243 PGlfia~~lRfD~~ 256 (315)
|=|-+|+|.|+|..
T Consensus 25 PRItvaWcKr~~VP 38 (62)
T 2b9s_B 25 PRIICSWAKAQDVP 38 (62)
T ss_dssp HHHHHHHHHHTTCC
T ss_pred chhhhhhhhhcCCC
Confidence 88999999999974
No 10
>3arc_J Photosystem II reaction center protein J; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 1s5l_J* 3a0b_J* 3a0h_J* 2axt_J* 3bz1_J* 3bz2_J* 3kzi_J* 3prq_J* 3prr_J*
Probab=2.78 E-value=7.1e+02 Score=16.31 Aligned_cols=14 Identities=43% Similarity=1.077 Sum_probs=9.3
Q ss_pred HHHHHHHHHhhhhe
Q 021270 187 GAILLAGLFVYDIF 200 (315)
Q Consensus 187 ~~ilL~~lf~YDif 200 (315)
+.+-+.++|+|--+
T Consensus 20 ~vi~~~giFfyGsY 33 (40)
T 3arc_J 20 GVIVIVGLFFYGAY 33 (40)
T ss_dssp HHHHHHHHHHHHHS
T ss_pred hhhheeeEEEeecc
Confidence 45667788888654
Done!