Query 021272
Match_columns 315
No_of_seqs 261 out of 1958
Neff 8.4
Searched_HMMs 46136
Date Fri Mar 29 08:57:12 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021272.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/021272hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0100 Molecular chaperones G 100.0 3.1E-63 6.6E-68 447.6 28.4 279 5-284 34-647 (663)
2 PTZ00009 heat shock 70 kDa pro 100.0 2.7E-53 5.8E-58 425.2 33.9 309 6-315 3-653 (653)
3 PLN03184 chloroplast Hsp70; Pr 100.0 3E-45 6.5E-50 367.4 32.4 198 110-313 472-673 (673)
4 KOG0101 Molecular chaperones H 100.0 4.8E-45 1E-49 351.3 24.0 279 1-281 1-615 (620)
5 PRK00290 dnaK molecular chaper 100.0 7.3E-43 1.6E-47 349.4 31.2 192 110-315 433-624 (627)
6 PTZ00400 DnaK-type molecular c 100.0 9.4E-43 2E-47 349.2 29.9 274 6-285 40-643 (663)
7 PRK13411 molecular chaperone D 100.0 1.8E-42 3.8E-47 346.9 30.0 169 110-282 435-603 (653)
8 PRK13410 molecular chaperone D 100.0 1.6E-42 3.5E-47 346.8 29.2 170 110-280 435-607 (668)
9 PTZ00186 heat shock 70 kDa pre 100.0 9.7E-41 2.1E-45 332.9 31.1 271 6-281 26-626 (657)
10 CHL00094 dnaK heat shock prote 100.0 1.3E-40 2.9E-45 332.4 28.4 165 110-280 435-599 (621)
11 KOG0102 Molecular chaperones m 100.0 1E-40 2.2E-45 310.9 21.7 278 5-285 25-632 (640)
12 TIGR02350 prok_dnaK chaperone 100.0 1.6E-39 3.4E-44 324.0 29.3 164 110-279 431-594 (595)
13 TIGR01991 HscA Fe-S protein as 100.0 3.1E-39 6.6E-44 320.9 28.9 166 110-281 421-586 (599)
14 PRK05183 hscA chaperone protei 100.0 4E-39 8.6E-44 320.8 29.7 166 110-281 437-602 (616)
15 PF00012 HSP70: Hsp70 protein; 100.0 9.9E-37 2.2E-41 304.7 27.5 266 9-280 1-602 (602)
16 PRK01433 hscA chaperone protei 100.0 8.3E-35 1.8E-39 288.0 27.8 158 110-273 415-572 (595)
17 KOG0103 Molecular chaperones H 100.0 3.5E-35 7.6E-40 281.1 19.9 270 9-281 3-647 (727)
18 COG0443 DnaK Molecular chapero 100.0 6.1E-32 1.3E-36 266.3 27.1 163 110-280 416-578 (579)
19 KOG0104 Molecular chaperones G 99.9 1.5E-24 3.3E-29 209.2 22.2 106 177-282 633-739 (902)
20 PRK11678 putative chaperone; P 99.5 9.6E-15 2.1E-19 140.6 6.9 178 9-188 2-260 (450)
21 PRK13929 rod-share determining 98.0 9.4E-06 2E-10 75.8 6.3 56 7-71 4-62 (335)
22 TIGR00904 mreB cell shape dete 97.9 2.5E-05 5.4E-10 72.8 5.9 52 9-69 4-62 (333)
23 PRK13928 rod shape-determining 97.8 3.7E-05 8.1E-10 71.8 5.4 53 9-70 5-60 (336)
24 PRK13930 rod shape-determining 97.5 0.00014 3.1E-09 67.7 5.9 54 7-69 8-64 (335)
25 PRK13927 rod shape-determining 97.4 0.0003 6.4E-09 65.6 6.3 54 7-69 5-61 (334)
26 COG1077 MreB Actin-like ATPase 97.4 0.00025 5.4E-09 64.5 5.3 54 7-69 6-64 (342)
27 PF06723 MreB_Mbl: MreB/Mbl pr 97.3 0.00018 3.8E-09 66.7 2.9 52 8-68 2-56 (326)
28 PF00370 FGGY_N: FGGY family o 88.4 0.43 9.2E-06 42.2 3.1 18 8-25 1-18 (245)
29 smart00268 ACTIN Actin. ACTIN 85.7 0.94 2E-05 42.7 4.0 45 8-60 2-55 (373)
30 PRK10331 L-fuculokinase; Provi 85.6 0.7 1.5E-05 45.2 3.1 22 7-28 2-24 (470)
31 PRK10939 autoinducer-2 (AI-2) 85.0 0.76 1.6E-05 45.6 3.1 19 7-25 3-21 (520)
32 COG1070 XylB Sugar (pentulose 85.0 1 2.2E-05 44.6 4.0 22 6-27 3-24 (502)
33 TIGR00241 CoA_E_activ CoA-subs 84.8 0.88 1.9E-05 40.5 3.2 19 9-27 2-20 (248)
34 cd00012 ACTIN Actin; An ubiqui 84.1 0.87 1.9E-05 42.9 3.0 45 9-61 1-55 (371)
35 PF14450 FtsA: Cell division p 82.9 2.3 5E-05 33.3 4.5 21 9-29 1-21 (120)
36 PTZ00294 glycerol kinase-like 82.2 1.2 2.6E-05 44.0 3.2 19 8-26 3-21 (504)
37 PRK15027 xylulokinase; Provisi 81.8 1.2 2.6E-05 43.8 3.0 18 9-26 2-19 (484)
38 smart00732 YqgFc Likely ribonu 81.6 1.5 3.3E-05 32.6 2.9 18 8-25 2-19 (99)
39 PRK04123 ribulokinase; Provisi 81.3 1.5 3.2E-05 43.8 3.5 19 7-25 3-21 (548)
40 TIGR01234 L-ribulokinase L-rib 81.1 1.5 3.2E-05 43.7 3.4 18 8-25 2-19 (536)
41 TIGR02628 fuculo_kin_coli L-fu 81.0 1.4 2.9E-05 43.1 3.1 19 8-26 2-20 (465)
42 PLN00130 succinate dehydrogena 81.0 0.2 4.2E-06 41.8 -2.3 22 7-28 57-78 (213)
43 PRK00047 glpK glycerol kinase; 80.1 1.7 3.6E-05 42.9 3.4 19 7-25 5-23 (498)
44 PTZ00280 Actin-related protein 79.8 2.9 6.2E-05 40.2 4.8 47 7-61 4-63 (414)
45 PLN02295 glycerol kinase 78.7 1.8 3.8E-05 42.9 3.1 18 8-25 1-18 (512)
46 TIGR01314 gntK_FGGY gluconate 78.7 1.8 3.9E-05 42.7 3.1 18 8-25 1-18 (505)
47 TIGR01315 5C_CHO_kinase FGGY-f 76.2 2.4 5.2E-05 42.3 3.2 21 8-28 1-22 (541)
48 TIGR01311 glycerol_kin glycero 76.0 2.4 5.2E-05 41.7 3.2 18 8-25 2-19 (493)
49 cd00529 RuvC_resolvase Hollida 75.1 4.5 9.6E-05 33.2 4.1 25 8-32 1-27 (154)
50 TIGR02259 benz_CoA_red_A benzo 74.1 2.8 6E-05 40.0 2.8 22 7-28 2-23 (432)
51 TIGR03192 benz_CoA_bzdQ benzoy 73.6 3.5 7.6E-05 37.7 3.3 20 8-27 33-52 (293)
52 PTZ00452 actin; Provisional 73.0 6 0.00013 37.5 4.9 48 5-60 3-60 (375)
53 COG4820 EutJ Ethanolamine util 72.4 4.1 8.9E-05 35.1 3.2 23 6-28 28-51 (277)
54 PRK13317 pantothenate kinase; 71.6 5.7 0.00012 36.1 4.2 23 7-29 2-24 (277)
55 TIGR03286 methan_mark_15 putat 71.3 3.9 8.4E-05 39.0 3.2 23 5-27 142-164 (404)
56 smart00842 FtsA Cell division 70.4 4.8 0.0001 34.0 3.3 64 9-81 1-67 (187)
57 TIGR02261 benz_CoA_red_D benzo 70.1 6.1 0.00013 35.5 4.0 18 8-25 2-19 (262)
58 PLN02669 xylulokinase 69.9 4 8.7E-05 40.9 3.1 20 6-25 7-26 (556)
59 PLN02362 hexokinase 68.1 3.1 6.7E-05 41.1 1.8 84 5-88 93-183 (509)
60 PF10458 Val_tRNA-synt_C: Valy 66.5 28 0.00062 24.0 6.0 42 206-247 12-53 (66)
61 KOG0102 Molecular chaperones m 64.4 81 0.0018 31.4 10.5 72 116-189 177-258 (640)
62 PRK13318 pantothenate kinase; 64.3 7.8 0.00017 34.6 3.6 20 9-28 2-21 (258)
63 PF00349 Hexokinase_1: Hexokin 64.2 5.6 0.00012 34.5 2.5 20 6-25 62-81 (206)
64 COG1924 Activator of 2-hydroxy 63.5 8.5 0.00018 36.3 3.6 24 5-28 133-156 (396)
65 PRK13321 pantothenate kinase; 63.1 8.4 0.00018 34.4 3.5 20 9-28 2-21 (256)
66 PTZ00004 actin-2; Provisional 62.2 11 0.00025 35.6 4.4 47 6-60 5-61 (378)
67 PLN02405 hexokinase 61.7 5.9 0.00013 39.1 2.4 84 5-88 93-183 (497)
68 PF03652 UPF0081: Uncharacteri 60.6 10 0.00022 30.5 3.2 20 8-27 2-21 (135)
69 PRK13331 pantothenate kinase; 60.1 13 0.00029 33.2 4.2 28 1-28 1-28 (251)
70 PTZ00281 actin; Provisional 59.7 12 0.00027 35.3 4.2 47 6-60 5-61 (376)
71 PRK13326 pantothenate kinase; 57.5 14 0.00031 33.2 4.0 25 4-28 3-27 (262)
72 TIGR02627 rhamnulo_kin rhamnul 57.4 5.5 0.00012 38.7 1.4 17 10-26 1-17 (454)
73 PTZ00009 heat shock 70 kDa pro 57.3 90 0.002 32.0 10.2 80 204-307 566-649 (653)
74 PF13941 MutL: MutL protein 57.3 13 0.00029 36.2 4.0 43 9-57 2-46 (457)
75 COG5026 Hexokinase [Carbohydra 54.8 12 0.00025 36.1 3.0 27 5-31 73-102 (466)
76 PF06277 EutA: Ethanolamine ut 54.8 21 0.00045 34.9 4.7 17 9-25 5-21 (473)
77 PRK00109 Holliday junction res 53.7 15 0.00032 29.6 3.2 21 6-26 3-23 (138)
78 PRK11546 zraP zinc resistance 53.5 1.2E+02 0.0026 24.6 12.2 20 176-195 42-61 (143)
79 PRK00292 glk glucokinase; Prov 53.5 13 0.00029 34.1 3.2 19 7-25 2-20 (316)
80 PF07820 TraC: TraC-like prote 53.2 83 0.0018 23.5 6.6 21 265-285 46-66 (92)
81 PRK10719 eutA reactivating fac 53.2 19 0.00042 35.1 4.3 50 8-60 7-69 (475)
82 KOG0100 Molecular chaperones G 53.1 21 0.00045 34.2 4.3 71 116-188 189-270 (663)
83 PTZ00466 actin-like protein; P 52.9 18 0.00039 34.4 4.1 46 7-60 12-67 (380)
84 PF11593 Med3: Mediator comple 52.4 19 0.00041 33.8 3.9 35 243-278 11-45 (379)
85 PF02075 RuvC: Crossover junct 52.1 25 0.00054 28.7 4.3 25 9-33 1-27 (149)
86 PRK09472 ftsA cell division pr 51.8 23 0.0005 34.1 4.7 27 7-33 8-37 (420)
87 PRK09343 prefoldin subunit bet 51.0 1.2E+02 0.0026 23.8 10.8 54 228-285 62-115 (121)
88 PLN02914 hexokinase 50.6 9.9 0.00022 37.4 1.9 83 6-88 94-183 (490)
89 TIGR01312 XylB D-xylulose kina 49.6 9.1 0.0002 37.3 1.5 16 10-25 1-16 (481)
90 KOG0103 Molecular chaperones H 49.4 47 0.001 33.9 6.4 44 234-277 671-725 (727)
91 TIGR01174 ftsA cell division p 49.3 19 0.00042 33.8 3.7 25 9-33 2-29 (371)
92 PRK00039 ruvC Holliday junctio 47.5 17 0.00038 30.2 2.7 18 8-25 3-20 (164)
93 COG0816 Predicted endonuclease 47.5 19 0.00042 29.1 2.9 21 7-27 2-22 (141)
94 KOG2517 Ribulose kinase and re 45.8 21 0.00046 35.3 3.3 20 6-25 5-24 (516)
95 PLN02596 hexokinase-like 45.6 15 0.00032 36.3 2.2 57 5-61 94-152 (490)
96 COG0849 ftsA Cell division ATP 44.9 34 0.00073 33.1 4.5 26 8-33 7-35 (418)
97 PLN02939 transferase, transfer 44.8 1.7E+02 0.0036 31.6 9.8 73 178-250 237-310 (977)
98 PF13881 Rad60-SLD_2: Ubiquiti 44.5 51 0.0011 25.5 4.7 52 65-130 21-72 (111)
99 PF15188 CCDC-167: Coiled-coil 44.2 94 0.002 22.9 5.7 35 227-269 30-64 (85)
100 PRK15080 ethanolamine utilizat 44.0 22 0.00047 32.0 3.0 20 6-25 23-42 (267)
101 PRK13320 pantothenate kinase; 43.8 29 0.00063 30.8 3.7 21 8-28 3-23 (244)
102 TIGR01175 pilM type IV pilus a 43.7 32 0.00068 31.9 4.1 26 7-32 3-30 (348)
103 PF15290 Syntaphilin: Golgi-lo 42.9 2.6E+02 0.0057 25.4 10.4 26 198-223 82-108 (305)
104 KOG1369 Hexokinase [Carbohydra 42.4 9.6 0.00021 37.2 0.4 80 5-88 84-169 (474)
105 PF01548 DEDD_Tnp_IS110: Trans 42.0 43 0.00093 26.6 4.2 20 9-28 1-20 (144)
106 PHA03185 UL14 tegument protein 42.0 2.1E+02 0.0045 24.6 8.1 40 190-230 67-106 (214)
107 PF07865 DUF1652: Protein of u 41.8 84 0.0018 22.1 5.0 49 142-191 15-65 (69)
108 PF00022 Actin: Actin; InterP 41.5 37 0.0008 32.0 4.3 47 6-60 3-54 (393)
109 PF14574 DUF4445: Domain of un 41.4 36 0.00079 32.8 4.2 17 9-25 3-19 (412)
110 PF04848 Pox_A22: Poxvirus A22 41.3 44 0.00095 27.2 4.0 18 8-25 2-19 (143)
111 PF08006 DUF1700: Protein of u 40.5 86 0.0019 26.2 6.0 34 242-275 26-61 (181)
112 TIGR00671 baf pantothenate kin 39.1 33 0.00072 30.4 3.3 19 10-28 2-20 (243)
113 COG1521 Pantothenate kinase ty 38.9 33 0.00071 30.7 3.2 21 9-29 2-22 (251)
114 TIGR01319 glmL_fam conserved h 38.6 18 0.00038 35.3 1.6 38 12-55 1-38 (463)
115 PF06160 EzrA: Septation ring 38.5 3.9E+02 0.0084 26.9 11.1 90 180-272 114-211 (560)
116 COG2433 Uncharacterized conser 36.9 3.9E+02 0.0085 27.1 10.4 60 202-270 451-510 (652)
117 KOG2003 TPR repeat-containing 36.8 1.1E+02 0.0025 29.8 6.5 22 256-277 711-732 (840)
118 TIGR00250 RNAse_H_YqgF RNAse H 36.7 24 0.00052 28.1 1.8 17 10-26 1-17 (130)
119 COG2410 Predicted nuclease (RN 36.6 78 0.0017 26.5 4.8 26 9-34 3-29 (178)
120 PTZ00107 hexokinase; Provision 36.0 28 0.00061 34.1 2.5 21 5-25 72-92 (464)
121 PF02970 TBCA: Tubulin binding 35.9 1.8E+02 0.0039 21.5 8.0 32 230-261 56-88 (90)
122 PF15456 Uds1: Up-regulated Du 35.6 2.2E+02 0.0048 22.5 11.9 20 177-196 18-37 (124)
123 PRK13881 conjugal transfer pro 34.7 2E+02 0.0044 28.0 7.9 41 230-270 176-217 (472)
124 PRK12408 glucokinase; Provisio 33.9 30 0.00065 32.2 2.3 18 8-25 17-34 (336)
125 COG4819 EutA Ethanolamine util 33.9 64 0.0014 30.2 4.2 23 230-252 347-369 (473)
126 PTZ00288 glucokinase 1; Provis 33.7 39 0.00085 32.5 3.1 22 5-26 24-45 (405)
127 PF08955 BofC_C: BofC C-termin 33.6 1.7E+02 0.0036 21.0 5.5 44 143-186 10-53 (75)
128 PRK13324 pantothenate kinase; 33.5 49 0.0011 29.7 3.5 20 9-28 2-21 (258)
129 PF03309 Pan_kinase: Type III 33.0 52 0.0011 28.2 3.5 21 9-29 1-21 (206)
130 PHA02557 22 prohead core prote 32.8 3.6E+02 0.0078 24.3 8.6 87 178-274 135-222 (271)
131 TIGR00555 panK_eukar pantothen 32.8 59 0.0013 29.6 3.9 21 9-29 2-23 (279)
132 PTZ00419 valyl-tRNA synthetase 32.7 1.9E+02 0.0042 31.3 8.4 55 207-269 938-992 (995)
133 PF05957 DUF883: Bacterial pro 32.6 2E+02 0.0044 21.1 7.5 66 181-252 5-72 (94)
134 COG0497 RecN ATPase involved i 32.3 2.7E+02 0.0059 28.0 8.6 36 236-271 276-313 (557)
135 PF01385 OrfB_IS605: Probable 31.5 27 0.00059 29.8 1.5 24 5-28 122-145 (227)
136 PLN02943 aminoacyl-tRNA ligase 30.7 2.1E+02 0.0045 31.0 8.1 41 207-247 898-938 (958)
137 PF03646 FlaG: FlaG protein; 30.0 97 0.0021 23.4 4.2 44 142-193 55-99 (107)
138 PRK13917 plasmid segregation p 30.0 1.2E+02 0.0025 28.5 5.5 18 8-25 3-20 (344)
139 smart00787 Spc7 Spc7 kinetocho 29.9 4.5E+02 0.0098 24.3 10.0 39 232-270 245-286 (312)
140 PRK00488 pheS phenylalanyl-tRN 29.8 4.8E+02 0.01 24.5 12.4 36 229-271 48-83 (339)
141 COG0554 GlpK Glycerol kinase [ 29.5 39 0.00085 33.0 2.3 20 6-25 4-23 (499)
142 PF10168 Nup88: Nuclear pore c 29.3 5.4E+02 0.012 26.8 10.6 9 8-16 213-221 (717)
143 KOG2008 BTK-associated SH3-dom 29.2 4.7E+02 0.01 24.3 12.2 49 233-281 183-234 (426)
144 PRK14101 bifunctional glucokin 29.2 40 0.00086 34.4 2.5 20 6-25 17-36 (638)
145 TIGR01865 cas_Csn1 CRISPR-asso 29.0 57 0.0012 34.4 3.6 42 8-50 2-47 (805)
146 PF05276 SH3BP5: SH3 domain-bi 28.6 4.2E+02 0.0091 23.5 11.5 30 256-285 203-232 (239)
147 PF06008 Laminin_I: Laminin Do 28.4 4.2E+02 0.0092 23.5 9.6 15 177-191 119-133 (264)
148 PF01869 BcrAD_BadFG: BadF/Bad 28.4 68 0.0015 28.6 3.6 17 10-26 1-17 (271)
149 PRK13311 N-acetyl-D-glucosamin 28.1 51 0.0011 29.2 2.7 20 9-28 2-22 (256)
150 TIGR02529 EutJ ethanolamine ut 27.9 55 0.0012 28.8 2.9 14 11-24 1-14 (239)
151 KOG4001 Axonemal dynein light 27.7 4E+02 0.0088 23.0 8.4 69 196-280 155-224 (259)
152 COG4575 ElaB Uncharacterized c 27.5 2.8E+02 0.0061 21.2 7.8 16 206-221 42-57 (104)
153 COG4907 Predicted membrane pro 27.4 47 0.001 32.2 2.4 7 18-24 170-176 (595)
154 PRK04778 septation ring format 27.2 6.6E+02 0.014 25.3 10.8 91 179-272 117-215 (569)
155 PF05378 Hydant_A_N: Hydantoin 27.1 60 0.0013 27.2 2.8 18 10-27 2-19 (176)
156 PF14276 DUF4363: Domain of un 27.0 2.9E+02 0.0064 21.2 11.2 87 180-275 25-111 (121)
157 COG1548 Predicted transcriptio 26.8 38 0.00082 30.5 1.5 19 7-25 3-21 (330)
158 COG2605 Predicted kinase relat 26.7 4.1E+02 0.0088 24.6 8.0 71 146-222 163-238 (333)
159 KOG3591 Alpha crystallins [Pos 26.7 87 0.0019 26.3 3.7 38 136-173 124-163 (173)
160 PF00901 Orbi_VP5: Orbivirus o 26.4 6.4E+02 0.014 24.9 10.3 16 257-272 185-200 (508)
161 PRK05729 valS valyl-tRNA synth 26.3 2.2E+02 0.0048 30.3 7.4 40 208-247 821-860 (874)
162 COG4575 ElaB Uncharacterized c 26.2 3E+02 0.0065 21.0 6.7 48 204-251 11-59 (104)
163 PF04614 Pex19: Pex19 protein 26.0 1.5E+02 0.0032 26.5 5.2 38 235-272 142-183 (248)
164 PRK00976 hypothetical protein; 26.0 84 0.0018 29.3 3.7 25 9-33 3-27 (326)
165 PRK14155 heat shock protein Gr 25.9 4.4E+02 0.0095 22.8 9.6 88 207-297 40-128 (208)
166 KOG3091 Nuclear pore complex, 25.7 5.4E+02 0.012 25.4 9.1 64 202-270 377-443 (508)
167 COG1069 AraB Ribulose kinase [ 25.1 64 0.0014 32.0 2.9 22 6-27 2-23 (544)
168 PRK09698 D-allose kinase; Prov 25.0 67 0.0014 29.1 2.9 24 5-28 2-26 (302)
169 PF07962 Swi3: Replication For 24.8 2.4E+02 0.0052 20.5 5.3 40 231-270 28-68 (83)
170 TIGR03285 methan_mark_14 putat 24.4 39 0.00085 31.8 1.2 50 229-285 373-422 (445)
171 COG4907 Predicted membrane pro 23.8 71 0.0015 31.1 2.8 10 65-74 148-157 (595)
172 PF06406 StbA: StbA protein; 23.8 83 0.0018 29.0 3.3 26 9-34 2-29 (318)
173 PF03484 B5: tRNA synthetase B 23.4 26 0.00056 24.5 -0.1 39 70-108 8-46 (70)
174 PF09887 DUF2114: Uncharacteri 23.0 42 0.00092 31.7 1.2 16 270-285 411-426 (448)
175 cd07313 terB_like_2 tellurium 22.7 3.1E+02 0.0067 20.1 5.9 18 175-192 13-30 (104)
176 COG4296 Uncharacterized protei 22.6 1.5E+02 0.0032 23.9 3.9 22 244-265 90-112 (156)
177 PLN02381 valyl-tRNA synthetase 22.5 3.8E+02 0.0083 29.4 8.4 39 209-247 1008-1046(1066)
178 TIGR03123 one_C_unchar_1 proba 22.4 96 0.0021 28.8 3.4 27 6-32 127-153 (318)
179 PF14712 Snapin_Pallidin: Snap 22.3 3.1E+02 0.0068 19.8 5.8 20 258-277 60-79 (92)
180 COG1334 FlaG Uncharacterized f 21.8 2.8E+02 0.006 21.8 5.3 41 142-190 67-108 (120)
181 PF01968 Hydantoinase_A: Hydan 21.7 1E+02 0.0023 28.0 3.5 27 7-33 77-103 (290)
182 COG4020 Uncharacterized protei 21.3 97 0.0021 27.8 3.0 21 8-28 4-24 (332)
183 KOG2912 Predicted DNA methylas 21.0 45 0.00097 31.0 0.9 12 11-22 106-117 (419)
184 COG1940 NagC Transcriptional r 20.9 1.2E+02 0.0026 27.6 3.8 23 6-28 5-28 (314)
185 PF09457 RBD-FIP: FIP domain ; 20.7 2.5E+02 0.0055 18.2 6.0 24 259-282 18-41 (48)
186 PF06667 PspB: Phage shock pro 20.6 3.3E+02 0.0071 19.5 5.1 34 227-272 33-66 (75)
187 PRK09458 pspB phage shock prot 20.6 2.7E+02 0.0058 20.0 4.6 34 227-272 33-66 (75)
188 PF07729 FCD: FCD domain; Int 20.2 3.5E+02 0.0077 19.7 6.1 25 227-251 18-42 (125)
No 1
>KOG0100 consensus Molecular chaperones GRP78/BiP/KAR2, HSP70 superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.1e-63 Score=447.62 Aligned_cols=279 Identities=67% Similarity=1.053 Sum_probs=270.3
Q ss_pred CCCCEEEEeccccceEEEEEeCCeEEEEEcCCCCcccceEEEecCCceeecHHHHHhHHhCCCcchhhhhhhhcCCCCCh
Q 021272 5 GEGPAIGIDLGTTYSCVGVWQHDRVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPLNTVFDAKRLIGRRFSDS 84 (315)
Q Consensus 5 ~~~~~iGID~GTtns~va~~~~g~~~vi~~~~~~~~~PS~v~~~~~~~~vG~~A~~~~~~~~~~~~~~~KrliG~~~~~~ 84 (315)
..+.|||||||||||||+++++|+++||.|++|+|.+||+|+|++++|++|.+|++++..||.||+++.||||||.|+|+
T Consensus 34 ~~gtvigIdLGTTYsCVgV~kNgrvEIiANdQGNRItPSyVaFt~derLiGdAAKNQ~~~NPenTiFD~KRLIGr~~~d~ 113 (663)
T KOG0100|consen 34 KLGTVIGIDLGTTYSCVGVYKNGRVEIIANDQGNRITPSYVAFTDDERLIGDAAKNQLTSNPENTIFDAKRLIGRKFNDK 113 (663)
T ss_pred ccceEEEEecCCceeeEEEEeCCeEEEEecCCCCccccceeeeccchhhhhhHhhcccccCcccceechHHHhCcccCCh
Confidence 35789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhcccCCCCccccCCCCCCCeEEE-------------------------------------------------------
Q 021272 85 SVQGDIKHWPFKVIPGAGDKPTIVV------------------------------------------------------- 109 (315)
Q Consensus 85 ~v~~~~~~~~~~vv~~~~g~~~i~v------------------------------------------------------- 109 (315)
.+|+++++|||+|+. .++.+.|+|
T Consensus 114 ~vq~Dik~~Pfkvv~-k~~kp~i~v~v~~g~~K~FtPeEiSaMiL~KMKe~AEayLGkkv~~AVvTvPAYFNDAQrQATK 192 (663)
T KOG0100|consen 114 SVQKDIKFLPFKVVN-KDGKPYIQVKVGGGETKVFTPEEISAMILTKMKETAEAYLGKKVTHAVVTVPAYFNDAQRQATK 192 (663)
T ss_pred hhhhhhhcCceEEEc-CCCCccEEEEccCCcccccCHHHHHHHHHHHHHHHHHHHhCCcccceEEecchhcchHHHhhhc
Confidence 999999999999994 688999998
Q ss_pred --------------------------------------------------------------------------------
Q 021272 110 -------------------------------------------------------------------------------- 109 (315)
Q Consensus 110 -------------------------------------------------------------------------------- 109 (315)
T Consensus 193 DAGtIAgLnV~RIiNePTaAAIAYGLDKk~gEknilVfDLGGGTFDVSlLtIdnGVFeVlaTnGDThLGGEDFD~rvm~~ 272 (663)
T KOG0100|consen 193 DAGTIAGLNVVRIINEPTAAAIAYGLDKKDGEKNILVFDLGGGTFDVSLLTIDNGVFEVLATNGDTHLGGEDFDQRVMEY 272 (663)
T ss_pred ccceeccceEEEeecCccHHHHHhcccccCCcceEEEEEcCCceEEEEEEEEcCceEEEEecCCCcccCccchHHHHHHH
Confidence
Q ss_pred --------------------------------------------------------------------------------
Q 021272 110 -------------------------------------------------------------------------------- 109 (315)
Q Consensus 110 -------------------------------------------------------------------------------- 109 (315)
T Consensus 273 fiklykkK~gkDv~kdnkA~~KLrRe~EkAKRaLSsqhq~riEIeS~fdG~DfSEtLtRAkFEElNmDLFr~TlkPv~kv 352 (663)
T KOG0100|consen 273 FIKLYKKKHGKDVRKDNKAVQKLRREVEKAKRALSSQHQVRIEIESLFDGVDFSETLTRAKFEELNMDLFRKTLKPVQKV 352 (663)
T ss_pred HHHHHhhhcCCccchhhHHHHHHHHHHHHHHhhhccccceEEeeeeccccccccchhhhhHHHHhhhHHHHHhhHHHHHH
Confidence
Q ss_pred --------------------------------------------------------------------------------
Q 021272 110 -------------------------------------------------------------------------------- 109 (315)
Q Consensus 110 -------------------------------------------------------------------------------- 109 (315)
T Consensus 353 l~Ds~lkKsdideiVLVGGsTrIPKvQqllk~fF~GKepskGinPdEAVAYGAAVQaGvlsGee~t~divLLDv~pLtlG 432 (663)
T KOG0100|consen 353 LEDSDLKKSDIDEIVLVGGSTRIPKVQQLLKDFFNGKEPSKGINPDEAVAYGAAVQAGVLSGEEDTGDIVLLDVNPLTLG 432 (663)
T ss_pred HhhcCcccccCceEEEecCcccChhHHHHHHHHhCCCCccCCCChHHHHHhhhhhhhcccccccCcCcEEEEeeccccce
Confidence
Q ss_pred ---------------------------------------EecCcccccccccccccccccCCCCCCCCcceEEEEEEEec
Q 021272 110 ---------------------------------------VYEGERARTRDNNLLGKFELSGIPPAPRGVPQITVCFDIDA 150 (315)
Q Consensus 110 ---------------------------------------vyqGe~~~~~~n~~Lg~~~l~~i~~~~~g~~~i~v~f~~d~ 150 (315)
+|+|||.++++|++||.|.|++|||+|+|.|+|+|+|.+|.
T Consensus 433 IETvGGVMTklI~RNTviPTkKSQvFsTa~DnQ~tV~I~vyEGER~mtkdn~lLGkFdltGipPAPRGvpqIEVtFevDa 512 (663)
T KOG0100|consen 433 IETVGGVMTKLIPRNTVIPTKKSQVFSTAQDNQPTVTIQVYEGERPMTKDNHLLGKFDLTGIPPAPRGVPQIEVTFEVDA 512 (663)
T ss_pred eeeecceeeccccCCcccCccccceeeecccCCceEEEEEeeccccccccccccccccccCCCCCCCCCccEEEEEEEcc
Confidence 99999999999999999999999999999999999999999
Q ss_pred CCcEEEEeeecccccccceEEecCCCCCCHHHHHHHHHHHHHhhhhchHHHHHHHHHHhHHHHHHHHHhhccc-cccccc
Q 021272 151 NGILNVSAEDKTTGQKNKITITNDKGRLSKEEIEKMVQEAEKYKSEDEEHKKKVEAKNALENYAYNMRNTIKD-DQIGSK 229 (315)
Q Consensus 151 nGil~V~a~~~~t~~~~~l~i~~~~~~Ls~~ei~~~~~~~~~~~~~D~~~~~~~~~kn~LEs~iy~~r~~l~~-~~~~~~ 229 (315)
||||.|++.++.+|+...++|+++.++|++++|++|++++++|..+|+..+++.++||+||+|.|.+++.+.+ +++...
T Consensus 513 ngiL~VsAeDKgtg~~~kitItNd~~rLt~EdIerMv~eAekFAeeDk~~KekieaRN~LE~YayslKnqi~dkekLg~K 592 (663)
T KOG0100|consen 513 NGILQVSAEDKGTGKKEKITITNDKGRLTPEDIERMVNEAEKFAEEDKKLKEKIEARNELESYAYSLKNQIGDKEKLGGK 592 (663)
T ss_pred CceEEEEeeccCCCCcceEEEecCCCCCCHHHHHHHHHHHHHHhhhhHHHHHHHHhHHHHHHHHHHhhhccCchhHhccc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999986 679999
Q ss_pred CCHHHHHHHHHHHHHHHHHHhcCccccHHHHHHHHHHHHHHHHHHHHHHHcCCCC
Q 021272 230 LSAADKKRIEDTIEEAMQWLDSNQLAEADEFEDKMKELESICNPIIAKMYQGGVA 284 (315)
Q Consensus 230 ~~~~e~~~l~~~l~e~e~wL~~~~~a~~~~~~~kl~~L~~~~~pi~~r~~e~~~~ 284 (315)
+++++++.+..++++..+||++|.+|+.++|.+++++|+.++.||...++...|+
T Consensus 593 l~~edKe~~e~av~e~~eWL~~n~~a~~Ee~~ek~kele~vv~PiisklY~~ag~ 647 (663)
T KOG0100|consen 593 LSDEDKETIEDAVEEALEWLESNQDASKEEFKEKKKELEAVVQPIISKLYGGAGG 647 (663)
T ss_pred CChhHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHHHHHHHhhhcCC
Confidence 9999999999999999999999999999999999999999999999999976433
No 2
>PTZ00009 heat shock 70 kDa protein; Provisional
Probab=100.00 E-value=2.7e-53 Score=425.18 Aligned_cols=309 Identities=71% Similarity=1.137 Sum_probs=283.7
Q ss_pred CCCEEEEeccccceEEEEEeCCeEEEEEcCCCCcccceEEEecCCceeecHHHHHhHHhCCCcchhhhhhhhcCCCCChh
Q 021272 6 EGPAIGIDLGTTYSCVGVWQHDRVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPLNTVFDAKRLIGRRFSDSS 85 (315)
Q Consensus 6 ~~~~iGID~GTtns~va~~~~g~~~vi~~~~~~~~~PS~v~~~~~~~~vG~~A~~~~~~~~~~~~~~~KrliG~~~~~~~ 85 (315)
.+.+|||||||||||||++++|.+++|+|+.|+|++||+|+|.+++++||..|+.++.++|.++++++|||||++++++.
T Consensus 3 ~~~~iGIDlGTt~s~va~~~~g~~~ii~n~~g~r~tPS~V~f~~~~~~vG~~A~~~~~~~p~~ti~~~KrliG~~~~d~~ 82 (653)
T PTZ00009 3 KGPAIGIDLGTTYSCVGVWKNENVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVARNPENTVFDAKRLIGRKFDDSV 82 (653)
T ss_pred cccEEEEEeCcccEEEEEEeCCceEEEECCCCCccCCcEEEECCCCEEEcHHHHHhhhhCcccEEhhhHHHhCCCCCchh
Confidence 56799999999999999999999999999999999999999998899999999999999999999999999999999999
Q ss_pred hhcccCCCCccccCCCCCCCeEEE--------------------------------------------------------
Q 021272 86 VQGDIKHWPFKVIPGAGDKPTIVV-------------------------------------------------------- 109 (315)
Q Consensus 86 v~~~~~~~~~~vv~~~~g~~~i~v-------------------------------------------------------- 109 (315)
++...+.+||.++.+.++.+.+.+
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~peel~a~iL~~lk~~ae~~~g~~v~~~VItVPa~f~~~qR~a~~~A 162 (653)
T PTZ00009 83 VQSDMKHWPFKVTTGGDDKPMIEVTYQGEKKTFHPEEISSMVLQKMKEIAEAYLGKQVKDAVVTVPAYFNDSQRQATKDA 162 (653)
T ss_pred HhhhhhcCceEEEEcCCCceEEEEEeCCceEEECHHHHHHHHHHHHHHHHHHHhCCCcceeEEEeCCCCCHHHHHHHHHH
Confidence 999999999999877777766654
Q ss_pred --------------------------------------------------------------------------------
Q 021272 110 -------------------------------------------------------------------------------- 109 (315)
Q Consensus 110 -------------------------------------------------------------------------------- 109 (315)
T Consensus 163 a~~AGl~v~~li~EptAAAl~y~~~~~~~~~~~vlv~D~GggT~dvsv~~~~~~~~~v~a~~gd~~lGG~d~D~~l~~~~ 242 (653)
T PTZ00009 163 GTIAGLNVLRIINEPTAAAIAYGLDKKGDGEKNVLIFDLGGGTFDVSLLTIEDGIFEVKATAGDTHLGGEDFDNRLVEFC 242 (653)
T ss_pred HHHcCCceeEEecchHHHHHHHhhhccCCCCCEEEEEECCCCeEEEEEEEEeCCeEEEEEecCCCCCChHHHHHHHHHHH
Confidence
Q ss_pred --------------------------------------------------------------------------------
Q 021272 110 -------------------------------------------------------------------------------- 109 (315)
Q Consensus 110 -------------------------------------------------------------------------------- 109 (315)
T Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~L~~~aEkaK~~LS~~~~~~i~i~~~~~~~d~~~~itR~~fe~l~~~l~~~~~~~i~~~ 322 (653)
T PTZ00009 243 VQDFKRKNRGKDLSSNQRALRRLRTQCERAKRTLSSSTQATIEIDSLFEGIDYNVTISRARFEELCGDYFRNTLQPVEKV 322 (653)
T ss_pred HHHHHHhccCCCCccCHHHHHHHHHHHHHHHHhCCCCceEEEEEEeccCCceEEEEECHHHHHHHHHHHHHHHHHHHHHH
Confidence
Q ss_pred --------------------------------------------------------------------------------
Q 021272 110 -------------------------------------------------------------------------------- 109 (315)
Q Consensus 110 -------------------------------------------------------------------------------- 109 (315)
T Consensus 323 L~~a~~~~~~i~~ViLvGGssriP~v~~~i~~~f~~~~~~~~~npdeaVA~GAa~~aa~ls~~~~~~~~~~~~~dv~p~s 402 (653)
T PTZ00009 323 LKDAGMDKRSVHEVVLVGGSTRIPKVQSLIKDFFNGKEPCKSINPDEAVAYGAAVQAAILTGEQSSQVQDLLLLDVTPLS 402 (653)
T ss_pred HHHcCCCHHHCcEEEEECCCCCChhHHHHHHHHhCCCCCCCCCCcchHHhhhhhhhHHHhcCCccccccceEEEeecccc
Confidence
Q ss_pred -----------------------------------------EecCcccccccccccccccccCCCCCCCCcceEEEEEEE
Q 021272 110 -----------------------------------------VYEGERARTRDNNLLGKFELSGIPPAPRGVPQITVCFDI 148 (315)
Q Consensus 110 -----------------------------------------vyqGe~~~~~~n~~Lg~~~l~~i~~~~~g~~~i~v~f~~ 148 (315)
+|+|++....+|..||.|.|.++++.++|.++|+|+|++
T Consensus 403 lgi~~~~~~~~~ii~~~t~iP~~~~~~f~t~~d~q~~~~i~i~ege~~~~~~n~~lg~~~i~~i~~~~~g~~~i~v~f~i 482 (653)
T PTZ00009 403 LGLETAGGVMTKLIERNTTIPTKKSQIFTTYADNQPGVLIQVFEGERAMTKDNNLLGKFHLDGIPPAPRGVPQIEVTFDI 482 (653)
T ss_pred cCccccCCceEEEEeCCCcCCccceeEeEeecCCCceEEEEEEecccccCCCCceEEEEEEcCCCCCCCCCceEEEEEEE
Confidence 899999999999999999999999999998899999999
Q ss_pred ecCCcEEEEeeecccccccceEEecCCCCCCHHHHHHHHHHHHHhhhhchHHHHHHHHHHhHHHHHHHHHhhcccccccc
Q 021272 149 DANGILNVSAEDKTTGQKNKITITNDKGRLSKEEIEKMVQEAEKYKSEDEEHKKKVEAKNALENYAYNMRNTIKDDQIGS 228 (315)
Q Consensus 149 d~nGil~V~a~~~~t~~~~~l~i~~~~~~Ls~~ei~~~~~~~~~~~~~D~~~~~~~~~kn~LEs~iy~~r~~l~~~~~~~ 228 (315)
|.||+|+|++.+..+++...+.|.....+|+.++++++++++.++..+|+..+++.+++|+||+|||++|++|.++++..
T Consensus 483 d~~Gil~v~~~~~~t~~~~~~~i~~~~~~ls~~~i~~~~~~~~~~~~~d~~~~~~~eakN~lEs~Iy~~r~~L~~~~~~~ 562 (653)
T PTZ00009 483 DANGILNVSAEDKSTGKSNKITITNDKGRLSKADIDRMVNEAEKYKAEDEANRERVEAKNGLENYCYSMKNTLQDEKVKG 562 (653)
T ss_pred CCCCeEEEEEecccCCceeeEEEeeccccccHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhhHHHHHHHHHHHhhhhhhc
Confidence 99999999999999999988888766667999999999999999999999999999999999999999999997556899
Q ss_pred cCCHHHHHHHHHHHHHHHHHHhcCccccHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCC----CCCCCCCCCC-CCCCCC
Q 021272 229 KLSAADKKRIEDTIEEAMQWLDSNQLAEADEFEDKMKELESICNPIIAKMYQGGVAPGA----GPAPGPGMDE-SAPPAG 303 (315)
Q Consensus 229 ~~~~~e~~~l~~~l~e~e~wL~~~~~a~~~~~~~kl~~L~~~~~pi~~r~~e~~~~~~~----~~~~~~~~~~-~~~~~~ 303 (315)
+++++++++|.+.++++++||+++++++.++|++|+++|+++++||..|++...+++-| ||+|| |||| ++++++
T Consensus 563 ~~t~ee~~~l~~~l~~~~~wL~~~~~~~~~~~~~kl~eL~~~~~pi~~r~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 641 (653)
T PTZ00009 563 KLSDSDKATIEKAIDEALEWLEKNQLAEKEEFEHKQKEVESVCNPIMTKMYQAAGGGMPGGMPGGMPG-GMPGGAGPAGA 641 (653)
T ss_pred cCCHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCCC-CCCCCCCCCCC
Confidence 99999999999999999999999888999999999999999999999999876655444 44443 5666 666777
Q ss_pred CCCCCCCcccCC
Q 021272 304 GSSAGPKIEEVD 315 (315)
Q Consensus 304 ~~~~~~~~~~~~ 315 (315)
|++.||++||||
T Consensus 642 ~~~~~~~~~~~~ 653 (653)
T PTZ00009 642 GASSGPTVEEVD 653 (653)
T ss_pred CCCCCCccccCC
Confidence 999999999998
No 3
>PLN03184 chloroplast Hsp70; Provisional
Probab=100.00 E-value=3e-45 Score=367.41 Aligned_cols=198 Identities=44% Similarity=0.702 Sum_probs=173.9
Q ss_pred EecCcccccccccccccccccCCCCCCCCcceEEEEEEEecCCcEEEEeeecccccccceEEecCCCCCCHHHHHHHHHH
Q 021272 110 VYEGERARTRDNNLLGKFELSGIPPAPRGVPQITVCFDIDANGILNVSAEDKTTGQKNKITITNDKGRLSKEEIEKMVQE 189 (315)
Q Consensus 110 vyqGe~~~~~~n~~Lg~~~l~~i~~~~~g~~~i~v~f~~d~nGil~V~a~~~~t~~~~~l~i~~~~~~Ls~~ei~~~~~~ 189 (315)
+|||++..+.+|..||+|.|.++++++.|.++|+|+|++|.||+|+|++.+..+++...++|... .+|+.+++++++++
T Consensus 472 i~~ge~~~~~~n~~lg~~~i~~i~~~~~g~~~i~v~f~id~~GiL~V~a~~~~t~~~~~~~i~~~-~~ls~eei~~~~~~ 550 (673)
T PLN03184 472 VLQGEREFVRDNKSLGSFRLDGIPPAPRGVPQIEVKFDIDANGILSVSATDKGTGKKQDITITGA-STLPKDEVERMVQE 550 (673)
T ss_pred EEeecccccccCceEEEEEEeCCCCCCCCCceEEEEEEeCCCCeEEEEEEecCCCeEEEEEeccc-ccccHHHHHHHHHH
Confidence 89999999999999999999999999999889999999999999999999999999888888754 46999999999999
Q ss_pred HHHhhhhchHHHHHHHHHHhHHHHHHHHHhhcccccccccCCHHHHHHHHHHHHHHHHHHhcCccccHHHHHHHHHHHHH
Q 021272 190 AEKYKSEDEEHKKKVEAKNALENYAYNMRNTIKDDQIGSKLSAADKKRIEDTIEEAMQWLDSNQLAEADEFEDKMKELES 269 (315)
Q Consensus 190 ~~~~~~~D~~~~~~~~~kn~LEs~iy~~r~~l~~~~~~~~~~~~e~~~l~~~l~e~e~wL~~~~~a~~~~~~~kl~~L~~ 269 (315)
+.++..+|+..+++.+++|+||++||.+|++|. ++...+++++++++.+.|+++++||+++ +.+++++++++|.+
T Consensus 551 ~~~~~~~D~~~~~~~eakN~lE~~iy~~r~~l~--e~~~~~~~eer~~l~~~l~~~e~wL~~~---d~~~ik~~~~~l~~ 625 (673)
T PLN03184 551 AEKFAKEDKEKRDAVDTKNQADSVVYQTEKQLK--ELGDKVPADVKEKVEAKLKELKDAIASG---STQKMKDAMAALNQ 625 (673)
T ss_pred HHHhhhhhHHHHHHHHHHHhHHHHHHHHHHHHH--HHhhhCCHHHHHHHHHHHHHHHHHHhcC---CHHHHHHHHHHHHH
Confidence 999999999999999999999999999999995 4888999999999999999999999986 56899999999999
Q ss_pred HHHHHHHHHHcCCCCCCCCCCCCCCCCC-CCCCCCCCCCC---CCccc
Q 021272 270 ICNPIIAKMYQGGVAPGAGPAPGPGMDE-SAPPAGGSSAG---PKIEE 313 (315)
Q Consensus 270 ~~~pi~~r~~e~~~~~~~~~~~~~~~~~-~~~~~~~~~~~---~~~~~ 313 (315)
.+.++..+++...+++|++|+||.-... ++..+||+.++ ++|++
T Consensus 626 ~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 673 (673)
T PLN03184 626 EVMQIGQSLYNQPGAGGAGPAPGGEAGSSSSSSSGGDGDDVIDADFTD 673 (673)
T ss_pred HHHHHHHHHHhcCCCCCCCCCcccccCCCCCCCCCCCCCceeccccCC
Confidence 9999999999888888788877654443 33333333332 66654
No 4
>KOG0101 consensus Molecular chaperones HSP70/HSC70, HSP70 superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.8e-45 Score=351.27 Aligned_cols=279 Identities=73% Similarity=1.104 Sum_probs=265.6
Q ss_pred CCCCCCCCEEEEeccccceEEEEEeCCeEEEEEcCCCCcccceEEEecCCceeecHHHHHhHHhCCCcchhhhhhhhcCC
Q 021272 1 MAGKGEGPAIGIDLGTTYSCVGVWQHDRVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPLNTVFDAKRLIGRR 80 (315)
Q Consensus 1 ~~~~~~~~~iGID~GTtns~va~~~~g~~~vi~~~~~~~~~PS~v~~~~~~~~vG~~A~~~~~~~~~~~~~~~KrliG~~ 80 (315)
|+....+.++|||||||+|||+++.++..+++.|++|.|++||+|+|...++++|..|+.+..++|.++++++||+||+.
T Consensus 1 ~~~~~~~~aiGIdlGtT~s~v~v~~~~~v~iian~~g~rttPs~vaf~~~e~~vg~~a~~qv~~np~ntv~~~krliGr~ 80 (620)
T KOG0101|consen 1 KLATPESVAIGIDLGTTYSCVGVYQSGKVEIIANDQGNRTTPSVVAFTDTERLIGDAAKNQVARNPDNTVFDAKRLIGRF 80 (620)
T ss_pred CCCccccceeeEeccCccceeeeEcCCcceeeeccccCccccceeeecccccchhhhhhhhhhcCCcceeeehhhhcCcc
Confidence 44456788999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCChhhhcccCCCCccccCCCCCCCeEEE---------------------------------------------------
Q 021272 81 FSDSSVQGDIKHWPFKVIPGAGDKPTIVV--------------------------------------------------- 109 (315)
Q Consensus 81 ~~~~~v~~~~~~~~~~vv~~~~g~~~i~v--------------------------------------------------- 109 (315)
|+|+.++..+++|||.+....++.+.|.+
T Consensus 81 f~d~~v~~~~k~~pf~V~~~~~~~~~i~~~~~~~~~~f~peeiss~~L~klke~Ae~~Lg~~v~~aviTVPa~F~~~Qr~ 160 (620)
T KOG0101|consen 81 FDDPEVQSDMKLWPFKVISDQGGKPKIQVTYKGETKSFNPEEISSMVLTKLKETAEAYLGKTVKKAVVTVPAYFNDSQRA 160 (620)
T ss_pred ccchhhHhHhhcCCcccccccCCcceEEecccccceeeeeeeeeehhccccHHHHHHHhcCceeeEEEEecCCcCHHHHH
Confidence 99999999999999999866677788877
Q ss_pred --------------------------------------------------------------------------------
Q 021272 110 -------------------------------------------------------------------------------- 109 (315)
Q Consensus 110 -------------------------------------------------------------------------------- 109 (315)
T Consensus 161 at~~A~~iaGl~vlrii~EPtAaalAygl~k~~~~~~~VlI~DlGggtfdvs~l~i~gG~~~vkat~gd~~lGGedf~~~ 240 (620)
T KOG0101|consen 161 ATKDAALIAGLNVLRIINEPTAAALAYGLDKKVLGERNVLIFDLGGGTFDVSVLSLEGGIFEVKATAGDTHLGGEDFDNK 240 (620)
T ss_pred HHHHHHHhcCCceeeeecchHHHHHHhhccccccceeeEEEEEcCCCceeeeeEEeccchhhhhhhcccccccchhhhHH
Confidence
Q ss_pred --------------------------------------------------------------------------------
Q 021272 110 -------------------------------------------------------------------------------- 109 (315)
Q Consensus 110 -------------------------------------------------------------------------------- 109 (315)
T Consensus 241 l~~h~~~ef~~k~~~d~~~n~r~l~rLR~a~E~aKr~LS~~~~~~i~vdsL~~g~d~~~~itrarfe~l~~dlf~~~~~~ 320 (620)
T KOG0101|consen 241 LVNHFAAEFKRKAGKDIGGNARALRRLRTACERAKRTLSSSTQASIEIDSLYEGIDFYTSITRARFEELNADLFRSTLEP 320 (620)
T ss_pred HHHHHHHHHHHhhccccccchHHHHHHHHHHHHHHhhhcccccceeccchhhccccccceeehhhhhhhhhHHHHHHHHH
Confidence
Q ss_pred --------------------------------------------------------------------------------
Q 021272 110 -------------------------------------------------------------------------------- 109 (315)
Q Consensus 110 -------------------------------------------------------------------------------- 109 (315)
T Consensus 321 v~~~L~da~~dk~~i~~vvlVGGstriPk~~~ll~d~f~~k~~~~sinpDeavA~GAavqaa~~~g~~~~~~~~l~lid~ 400 (620)
T KOG0101|consen 321 VEKALKDAKLDKSDIDEVVLVGGSTRIPKVQKLLEDFFNGKELNKSINPDEAVAYGAAVQAAILSGDKSLNIQDLLLIDV 400 (620)
T ss_pred HHHHHHhhccCccCCceeEEecCcccchHHHHHHHHHhcccccccCCCHHHHHHhhHHHHhhhccCCccccccceeeeec
Confidence
Q ss_pred ---------------------------------------------EecCcccccccccccccccccCCCCCCCCcceEEE
Q 021272 110 ---------------------------------------------VYEGERARTRDNNLLGKFELSGIPPAPRGVPQITV 144 (315)
Q Consensus 110 ---------------------------------------------vyqGe~~~~~~n~~Lg~~~l~~i~~~~~g~~~i~v 144 (315)
+|+|++..+++|..||.|.|.+|||+|+|+|.|.|
T Consensus 401 ~pl~~gve~a~~~~~~~i~~~t~~P~~k~~~ftt~~dnQp~V~I~VyEger~~~kdn~~lg~feL~gippaprgvp~Iev 480 (620)
T KOG0101|consen 401 APLSLGVETAGGVFTVLIPRNTSIPTKKTQTFTTYSDNQPGVLIQVYEGERAMTKDNNLLGKFELTGIPPAPRGVPQIEV 480 (620)
T ss_pred ccccccccccCCcceeeeecccccceeeeeeeeeecCCCCceeEEEEeccccccccccccceeeecCCCccccCCcceeE
Confidence 99999999999999999999999999999999999
Q ss_pred EEEEecCCcEEEEeeecccccccceEEecCCCCCCHHHHHHHHHHHHHhhhhchHHHHHHHHHHhHHHHHHHHHhhcccc
Q 021272 145 CFDIDANGILNVSAEDKTTGQKNKITITNDKGRLSKEEIEKMVQEAEKYKSEDEEHKKKVEAKNALENYAYNMRNTIKDD 224 (315)
Q Consensus 145 ~f~~d~nGil~V~a~~~~t~~~~~l~i~~~~~~Ls~~ei~~~~~~~~~~~~~D~~~~~~~~~kn~LEs~iy~~r~~l~~~ 224 (315)
+|.+|.||||.|++.++.+||...++|.+..++|+.++|++|..+++++..+|...+.+..++|.||+|+|.++..+++.
T Consensus 481 tfdiD~ngiL~Vta~d~stgK~~~i~i~n~~grls~~~Ierm~~ea~~~~~~d~~~~~~v~~~~~le~~~f~~~~~~~~~ 560 (620)
T KOG0101|consen 481 TFDIDANGILNVTAVDKSTGKENKITITNDKGRLSKEEIERMVQEAEKYKAEDEKQKDKVAAKNSLESYAFNMKATVEDE 560 (620)
T ss_pred EEecCCCcEEEEeeccccCCccceEEEecccceeehhhhhhhhhhhhhccccCHHHHHHHHHHhhHHHHHHhhhhhhhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999753
Q ss_pred cccccCCHHHHHHHHHHHHHHHHHHhcCccccHHHHHHHHHHHHHHHHHHHHHHHcC
Q 021272 225 QIGSKLSAADKKRIEDTIEEAMQWLDSNQLAEADEFEDKMKELESICNPIIAKMYQG 281 (315)
Q Consensus 225 ~~~~~~~~~e~~~l~~~l~e~e~wL~~~~~a~~~~~~~kl~~L~~~~~pi~~r~~e~ 281 (315)
. ..++++++.++.+.++++..||+.+..+..++|+.|..+|+..|.||+.+++..
T Consensus 561 ~--~~i~~~~~~~~~~~~~~~i~wl~~~~~~~~~e~e~k~~el~~~~~p~~~~~~~~ 615 (620)
T KOG0101|consen 561 K--GKINEEDKQKILDKCNEVINWLDKNQLAEKEEFEHKQKELELVCNPIISKLYQG 615 (620)
T ss_pred c--cccChhhhhhHHHHHHHHHHHhhhcccccccHHHHHHHHHHhhccHHHHhhhcc
Confidence 3 789999999999999999999999988889999999999999999999988755
No 5
>PRK00290 dnaK molecular chaperone DnaK; Provisional
Probab=100.00 E-value=7.3e-43 Score=349.35 Aligned_cols=192 Identities=43% Similarity=0.665 Sum_probs=166.6
Q ss_pred EecCcccccccccccccccccCCCCCCCCcceEEEEEEEecCCcEEEEeeecccccccceEEecCCCCCCHHHHHHHHHH
Q 021272 110 VYEGERARTRDNNLLGKFELSGIPPAPRGVPQITVCFDIDANGILNVSAEDKTTGQKNKITITNDKGRLSKEEIEKMVQE 189 (315)
Q Consensus 110 vyqGe~~~~~~n~~Lg~~~l~~i~~~~~g~~~i~v~f~~d~nGil~V~a~~~~t~~~~~l~i~~~~~~Ls~~ei~~~~~~ 189 (315)
+|+|++....+|..||.|.|.++|+.++|.++|+|+|++|.||+|+|++.+..+++...++|... .+|+.+++++++++
T Consensus 433 v~~ge~~~~~~~~~lg~~~i~~~~~~~~g~~~i~v~f~~d~~gil~v~a~~~~~~~~~~~~i~~~-~~ls~e~i~~~~~~ 511 (627)
T PRK00290 433 VLQGEREMAADNKSLGRFNLTGIPPAPRGVPQIEVTFDIDANGIVHVSAKDKGTGKEQSITITAS-SGLSDEEIERMVKD 511 (627)
T ss_pred EEEecccccCcCceEEEEEECCCCCCCCCCceEEEEEEECCCceEEEEEEEccCCceeEEEeccc-cccCHHHHHHHHHH
Confidence 89999999999999999999999999999889999999999999999999999999888888764 45999999999999
Q ss_pred HHHhhhhchHHHHHHHHHHhHHHHHHHHHhhcccccccccCCHHHHHHHHHHHHHHHHHHhcCccccHHHHHHHHHHHHH
Q 021272 190 AEKYKSEDEEHKKKVEAKNALENYAYNMRNTIKDDQIGSKLSAADKKRIEDTIEEAMQWLDSNQLAEADEFEDKMKELES 269 (315)
Q Consensus 190 ~~~~~~~D~~~~~~~~~kn~LEs~iy~~r~~l~~~~~~~~~~~~e~~~l~~~l~e~e~wL~~~~~a~~~~~~~kl~~L~~ 269 (315)
+.++...|+..+++.+++|+||++||.+|++|. ++...++++++++|.+.|+++++||+.+ +.++|++++++|++
T Consensus 512 ~~~~~~~d~~~~~~~eakN~le~~i~~~~~~l~--~~~~~~~~~e~~~i~~~l~~~~~wL~~~---~~~~i~~k~~~L~~ 586 (627)
T PRK00290 512 AEANAEEDKKRKELVEARNQADSLIYQTEKTLK--ELGDKVPADEKEKIEAAIKELKEALKGE---DKEAIKAKTEELTQ 586 (627)
T ss_pred HHHhhhcchhHHHHHHHHHHHHHHHHHHHHHHH--HHhccCCHHHHHHHHHHHHHHHHHHhcC---CHHHHHHHHHHHHH
Confidence 999999999999999999999999999999996 4778999999999999999999999976 67899999999999
Q ss_pred HHHHHHHHHHcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccCC
Q 021272 270 ICNPIIAKMYQGGVAPGAGPAPGPGMDESAPPAGGSSAGPKIEEVD 315 (315)
Q Consensus 270 ~~~pi~~r~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 315 (315)
+++|+..|++...+.. + |. +++.++...-+.++|||||
T Consensus 587 ~~~~~~~~~~~~~~~~---~-~~----~~~~~~~~~~~~~~~~~~~ 624 (627)
T PRK00290 587 ASQKLGEAMYQQAQAA---Q-GA----AGAAAKDDDVVDAEFEEVK 624 (627)
T ss_pred HHHHHHHHHHhhcccc---c-cc----cccCCCCCccccCceeecC
Confidence 9999999987532211 1 11 1111122244569999996
No 6
>PTZ00400 DnaK-type molecular chaperone; Provisional
Probab=100.00 E-value=9.4e-43 Score=349.18 Aligned_cols=274 Identities=47% Similarity=0.758 Sum_probs=254.4
Q ss_pred CCCEEEEeccccceEEEEEeCCeEEEEEcCCCCcccceEEEecC-CceeecHHHHHhHHhCCCcchhhhhhhhcCCCCCh
Q 021272 6 EGPAIGIDLGTTYSCVGVWQHDRVEIIANDQGNRTTPSYVAFTD-TERLIGDAAKNQVAMNPLNTVFDAKRLIGRRFSDS 84 (315)
Q Consensus 6 ~~~~iGID~GTtns~va~~~~g~~~vi~~~~~~~~~PS~v~~~~-~~~~vG~~A~~~~~~~~~~~~~~~KrliG~~~~~~ 84 (315)
++.+|||||||||||||++.+|.++||+|..|+|++||+|+|.. ++++||..|+.++.++|.++++++|||||++++|+
T Consensus 40 ~~~viGIDlGTt~s~va~~~~~~~~ii~n~~g~r~tPS~V~f~~~~~~~vG~~A~~~~~~~p~~ti~~~KrliG~~~~d~ 119 (663)
T PTZ00400 40 TGDIVGIDLGTTNSCVAIMEGSQPKVIENSEGMRTTPSVVAFTEDGQRLVGIVAKRQAVTNPENTVFATKRLIGRRYDED 119 (663)
T ss_pred cCcEEEEEECcccEEEEEEeCCeeEEEECCCCCcccCeEEEEeCCCCEEECHHHHHhHHhCCcceehhhhhhcCCCcCcH
Confidence 45799999999999999999999999999999999999999975 48999999999999999999999999999999999
Q ss_pred hhhcccCCCCccccCCCCCCCeEEE-------------------------------------------------------
Q 021272 85 SVQGDIKHWPFKVIPGAGDKPTIVV------------------------------------------------------- 109 (315)
Q Consensus 85 ~v~~~~~~~~~~vv~~~~g~~~i~v------------------------------------------------------- 109 (315)
.++.....+||+++.+.++.+.+.+
T Consensus 120 ~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~speel~a~iL~~lk~~ae~~lg~~v~~~VITVPa~f~~~qR~a~~~Aa~~ 199 (663)
T PTZ00400 120 ATKKEQKILPYKIVRASNGDAWIEAQGKKYSPSQIGAFVLEKMKETAESYLGRKVKQAVITVPAYFNDSQRQATKDAGKI 199 (663)
T ss_pred HHHhhhccCCeEEEecCCCceEEEECCEEECHHHHHHHHHHHHHHHHHHHhCCCCceEEEEECCCCCHHHHHHHHHHHHH
Confidence 9999999999999988888887766
Q ss_pred --------------------------------------------------------------------------------
Q 021272 110 -------------------------------------------------------------------------------- 109 (315)
Q Consensus 110 -------------------------------------------------------------------------------- 109 (315)
T Consensus 200 AGl~v~~li~EptAAAlay~~~~~~~~~vlV~DlGgGT~DvSv~~~~~g~~~v~a~~gd~~LGG~d~D~~l~~~l~~~f~ 279 (663)
T PTZ00400 200 AGLDVLRIINEPTAAALAFGMDKNDGKTIAVYDLGGGTFDISILEILGGVFEVKATNGNTSLGGEDFDQRILNYLIAEFK 279 (663)
T ss_pred cCCceEEEeCchHHHHHHhccccCCCcEEEEEeCCCCeEEEEEEEecCCeeEEEecccCCCcCHHHHHHHHHHHHHHHhh
Confidence
Q ss_pred --------------------------------------------------------------------------------
Q 021272 110 -------------------------------------------------------------------------------- 109 (315)
Q Consensus 110 -------------------------------------------------------------------------------- 109 (315)
T Consensus 280 ~~~~~~~~~~~~a~~~L~~~aE~aK~~LS~~~~~~i~i~~~~~d~~g~~~~~~~itR~efe~l~~~l~~~~~~~i~~~L~ 359 (663)
T PTZ00400 280 KQQGIDLKKDKLALQRLREAAETAKIELSSKTQTEINLPFITADQSGPKHLQIKLSRAKLEELTHDLLKKTIEPCEKCIK 359 (663)
T ss_pred hhcCCCcccCHHHHHHHHHHHHHHHHHcCCCCceEEEEEeeccCCCCceEEEEEECHHHHHHHHHHHHHHHHHHHHHHHH
Confidence
Q ss_pred --------------------------------------------------------------------------------
Q 021272 110 -------------------------------------------------------------------------------- 109 (315)
Q Consensus 110 -------------------------------------------------------------------------------- 109 (315)
T Consensus 360 ~a~~~~~~i~~ViLvGGssriP~v~~~l~~~f~~~~~~~~npdeaVA~GAAi~aa~l~~~~~~~~~~dv~p~slgi~~~~ 439 (663)
T PTZ00400 360 DAGVKKDELNDVILVGGMTRMPKVSETVKKIFGKEPSKGVNPDEAVAMGAAIQAGVLKGEIKDLLLLDVTPLSLGIETLG 439 (663)
T ss_pred HcCCCHHHCcEEEEECCccCChHHHHHHHHHhCCCcccCCCCccceeeccHHHHHhhcCCccceEEEeccccceEEEecC
Confidence
Q ss_pred ----------------------------------EecCcccccccccccccccccCCCCCCCCcceEEEEEEEecCCcEE
Q 021272 110 ----------------------------------VYEGERARTRDNNLLGKFELSGIPPAPRGVPQITVCFDIDANGILN 155 (315)
Q Consensus 110 ----------------------------------vyqGe~~~~~~n~~Lg~~~l~~i~~~~~g~~~i~v~f~~d~nGil~ 155 (315)
+|+|++..+.+|..||+|.+.++|+++.|.++|+|+|.+|.||+|+
T Consensus 440 g~~~~ii~~~t~iP~~~~~~f~~~~d~q~~~~i~i~ege~~~~~~n~~lg~~~i~~i~~~~~g~~~i~v~f~id~~Gil~ 519 (663)
T PTZ00400 440 GVFTRLINRNTTIPTKKSQVFSTAADNQTQVGIKVFQGEREMAADNKLLGQFDLVGIPPAPRGVPQIEVTFDVDANGIMN 519 (663)
T ss_pred CeeEEEEecCccCCccceeeeeeccCCCceEEEEEEEecCccCCcCceeEEEEEcCCCCCCCCCceEEEEEEECCCCCEE
Confidence 8999999999999999999999999999998999999999999999
Q ss_pred EEeeecccccccceEEecCCCCCCHHHHHHHHHHHHHhhhhchHHHHHHHHHHhHHHHHHHHHhhcccccccccCCHHHH
Q 021272 156 VSAEDKTTGQKNKITITNDKGRLSKEEIEKMVQEAEKYKSEDEEHKKKVEAKNALENYAYNMRNTIKDDQIGSKLSAADK 235 (315)
Q Consensus 156 V~a~~~~t~~~~~l~i~~~~~~Ls~~ei~~~~~~~~~~~~~D~~~~~~~~~kn~LEs~iy~~r~~l~~~~~~~~~~~~e~ 235 (315)
|++.+..+++...+.|... .+|+.++++++++++.++..+|+..+++.+++|+||++||.+|+.|. ++...++++++
T Consensus 520 v~a~~~~~~~~~~~~i~~~-~~ls~~ei~~~~~~~~~~~~~D~~~~~~~eakN~lEs~iy~~r~~l~--e~~~~~s~~er 596 (663)
T PTZ00400 520 ISAVDKSTGKKQEITIQSS-GGLSDEEIEKMVKEAEEYKEQDEKKKELVDAKNEAETLIYSVEKQLS--DLKDKISDADK 596 (663)
T ss_pred EEEEeccCCcEEEEEeecc-ccccHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH--HHhhhCCHHHH
Confidence 9999999999888888764 46999999999999999999999999999999999999999999996 38889999999
Q ss_pred HHHHHHHHHHHHHHhcCccccHHHHHHHHHHHHHHHHHHHHHHHcCCCCC
Q 021272 236 KRIEDTIEEAMQWLDSNQLAEADEFEDKMKELESICNPIIAKMYQGGVAP 285 (315)
Q Consensus 236 ~~l~~~l~e~e~wL~~~~~a~~~~~~~kl~~L~~~~~pi~~r~~e~~~~~ 285 (315)
+++.+.++++++||+++ +.++|++++++|++.+.++..+++......
T Consensus 597 e~i~~~l~~~~~WL~~~---d~~~i~~k~~eL~~~l~~l~~k~y~~~~~~ 643 (663)
T PTZ00400 597 DELKQKITKLRSTLSSE---DVDSIKDKTKQLQEASWKISQQAYKQGNSD 643 (663)
T ss_pred HHHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHHHHHHHHHHHhhhccc
Confidence 99999999999999986 578999999999999999999887554433
No 7
>PRK13411 molecular chaperone DnaK; Provisional
Probab=100.00 E-value=1.8e-42 Score=346.95 Aligned_cols=169 Identities=46% Similarity=0.701 Sum_probs=157.6
Q ss_pred EecCcccccccccccccccccCCCCCCCCcceEEEEEEEecCCcEEEEeeecccccccceEEecCCCCCCHHHHHHHHHH
Q 021272 110 VYEGERARTRDNNLLGKFELSGIPPAPRGVPQITVCFDIDANGILNVSAEDKTTGQKNKITITNDKGRLSKEEIEKMVQE 189 (315)
Q Consensus 110 vyqGe~~~~~~n~~Lg~~~l~~i~~~~~g~~~i~v~f~~d~nGil~V~a~~~~t~~~~~l~i~~~~~~Ls~~ei~~~~~~ 189 (315)
+|||++....+|..||.|.|.++|++|.|.++|+|+|++|.||+|+|++.+..+++...+.|.+. .+|+.+++++++++
T Consensus 435 v~~ge~~~~~~n~~lg~~~l~~i~~~~~g~~~i~v~f~id~~Gil~v~a~d~~t~~~~~~~i~~~-~~ls~~ei~~~~~~ 513 (653)
T PRK13411 435 VLQGERAMAKDNKSLGKFLLTGIPPAPRGVPQIEVSFEIDVNGILKVSAQDQGTGREQSIRITNT-GGLSSNEIERMRQE 513 (653)
T ss_pred EEEecCcccccCceeeEEEEcCCCCCCCCCccEEEEEEECCCCeEEEEEeeccCCceEeeEEecc-ccchHHHHHHHHHH
Confidence 89999999999999999999999999999989999999999999999999999998888888764 45999999999999
Q ss_pred HHHhhhhchHHHHHHHHHHhHHHHHHHHHhhcccccccccCCHHHHHHHHHHHHHHHHHHhcCccccHHHHHHHHHHHHH
Q 021272 190 AEKYKSEDEEHKKKVEAKNALENYAYNMRNTIKDDQIGSKLSAADKKRIEDTIEEAMQWLDSNQLAEADEFEDKMKELES 269 (315)
Q Consensus 190 ~~~~~~~D~~~~~~~~~kn~LEs~iy~~r~~l~~~~~~~~~~~~e~~~l~~~l~e~e~wL~~~~~a~~~~~~~kl~~L~~ 269 (315)
+.++..+|+..+++.+++|+||++||.+|+.|. .+...+++++|+++.+.++++++||+++ +++.++|++++++|++
T Consensus 514 ~~~~~~~D~~~~~~~eakN~lEs~iy~~r~~l~--~~~~~~~~~er~~i~~~l~~~~~wL~~~-~~~~~~~~~~~~el~~ 590 (653)
T PRK13411 514 AEKYAEEDRRRKQLIELKNQADSLLYSYESTLK--ENGELISEELKQRAEQKVEQLEAALTDP-NISLEELKQQLEEFQQ 590 (653)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH--HhhccCCHHHHHHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHH
Confidence 999999999999999999999999999999996 3678999999999999999999999984 4689999999999999
Q ss_pred HHHHHHHHHHcCC
Q 021272 270 ICNPIIAKMYQGG 282 (315)
Q Consensus 270 ~~~pi~~r~~e~~ 282 (315)
.+.++..+++...
T Consensus 591 ~~~~i~~~~y~~~ 603 (653)
T PRK13411 591 ALLAIGAEVYQQG 603 (653)
T ss_pred HHHHHHHHHHhhc
Confidence 9999999988653
No 8
>PRK13410 molecular chaperone DnaK; Provisional
Probab=100.00 E-value=1.6e-42 Score=346.81 Aligned_cols=170 Identities=35% Similarity=0.606 Sum_probs=157.2
Q ss_pred EecCcccccccccccccccccCCCCCCCCcceEEEEEEEecCCcEEEEeeecccccccceEEecCCCCCCHHHHHHHHHH
Q 021272 110 VYEGERARTRDNNLLGKFELSGIPPAPRGVPQITVCFDIDANGILNVSAEDKTTGQKNKITITNDKGRLSKEEIEKMVQE 189 (315)
Q Consensus 110 vyqGe~~~~~~n~~Lg~~~l~~i~~~~~g~~~i~v~f~~d~nGil~V~a~~~~t~~~~~l~i~~~~~~Ls~~ei~~~~~~ 189 (315)
+|||++..+.+|..||+|.|.++|++|+|.++|+|+|++|.||+|+|++.+..++++..++|... .+|+.+|+++++++
T Consensus 435 v~qGe~~~~~~n~~lg~~~l~~i~~~~~g~~~I~v~f~id~nGiL~V~a~d~~tg~~~~~~i~~~-~~ls~~ei~~~~~~ 513 (668)
T PRK13410 435 VWQGEREMASDNKSLGRFKLSGIPPAPRGVPQVQVAFDIDANGILQVSATDRTTGREQSVTIQGA-STLSEQEVNRMIQE 513 (668)
T ss_pred EEeeccccccCCceEEEEEEeCCCCCCCCCCeEEEEEEECCCcEEEEEEEEcCCCceeeeeeccc-ccCCHHHHHHHHHH
Confidence 89999999999999999999999999999999999999999999999999999999888888764 56999999999999
Q ss_pred HHHhhhhchHHHHHHHHHHhHHHHHHHHHhhccc--ccccccCCHHHHHHHHHHHHHHHHHHhcC-ccccHHHHHHHHHH
Q 021272 190 AEKYKSEDEEHKKKVEAKNALENYAYNMRNTIKD--DQIGSKLSAADKKRIEDTIEEAMQWLDSN-QLAEADEFEDKMKE 266 (315)
Q Consensus 190 ~~~~~~~D~~~~~~~~~kn~LEs~iy~~r~~l~~--~~~~~~~~~~e~~~l~~~l~e~e~wL~~~-~~a~~~~~~~kl~~ 266 (315)
+.++..+|+..+++.+++|++|+|||.+|++|.+ ..|..++++++|+++...|+++++||+++ .....+.|.+.++.
T Consensus 514 ~~~~~~~d~~~~~~~e~kn~~e~~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~wL~~~~~~~~~~~~~~~~~~ 593 (668)
T PRK13410 514 AEAKADEDRRRRERIEKRNRALTLIAQAERRLRDAALEFGPYFAERQRRAVESAMRDVQDSLEQDDDRELDLAVADLQEA 593 (668)
T ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccCCHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999964 36889999999999999999999999985 44567778888888
Q ss_pred HHHHHHHHHHHHHc
Q 021272 267 LESICNPIIAKMYQ 280 (315)
Q Consensus 267 L~~~~~pi~~r~~e 280 (315)
|..+..|+..|+.|
T Consensus 594 l~~~~~~~~~~~~~ 607 (668)
T PRK13410 594 LYGLNREVRAEYKE 607 (668)
T ss_pred HHHHHHHHHHHHhh
Confidence 88999999999998
No 9
>PTZ00186 heat shock 70 kDa precursor protein; Provisional
Probab=100.00 E-value=9.7e-41 Score=332.87 Aligned_cols=271 Identities=40% Similarity=0.665 Sum_probs=251.0
Q ss_pred CCCEEEEeccccceEEEEEeCCeEEEEEcCCCCcccceEEEecCCceeecHHHHHhHHhCCCcchhhhhhhhcCCCCChh
Q 021272 6 EGPAIGIDLGTTYSCVGVWQHDRVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPLNTVFDAKRLIGRRFSDSS 85 (315)
Q Consensus 6 ~~~~iGID~GTtns~va~~~~g~~~vi~~~~~~~~~PS~v~~~~~~~~vG~~A~~~~~~~~~~~~~~~KrliG~~~~~~~ 85 (315)
++.+|||||||||||||++.+|.+++++|..|.+++||+|+|.+++++||..|+.++..+|.++++++|||||++++++.
T Consensus 26 ~~~viGIDLGTTnS~vA~~~~~~~~ii~n~~g~r~tPS~V~f~~~~~lvG~~Ak~~~~~~p~~ti~~~KRliG~~~~d~~ 105 (657)
T PTZ00186 26 QGDVIGVDLGTTYSCVATMDGDKARVLENSEGFRTTPSVVAFKGSEKLVGLAAKRQAITNPQSTFYAVKRLIGRRFEDEH 105 (657)
T ss_pred cceEEEEEeCcCeEEEEEEeCCceEEeecCCCCcccceEEEECCCCEEEcHHHHHhhhhCchhHHHHHHHHhccccccHH
Confidence 45799999999999999999999999999999999999999998899999999999999999999999999999999999
Q ss_pred hhcccCCCCccccCCCCCCCeEEE--------------------------------------------------------
Q 021272 86 VQGDIKHWPFKVIPGAGDKPTIVV-------------------------------------------------------- 109 (315)
Q Consensus 86 v~~~~~~~~~~vv~~~~g~~~i~v-------------------------------------------------------- 109 (315)
++.....+||.++.+.++.+.+.+
T Consensus 106 v~~~~~~~p~~vv~~~~~~~~i~~~~~~~~speeisa~iL~~Lk~~Ae~~lg~~v~~aVITVPayF~~~qR~at~~Aa~~ 185 (657)
T PTZ00186 106 IQKDIKNVPYKIVRAGNGDAWVQDGNGKQYSPSQIGAFVLEKMKETAENFLGHKVSNAVVTCPAYFNDAQRQATKDAGTI 185 (657)
T ss_pred HHHhhccCcEEEEEcCCCceEEEeCCCeEEcHHHHHHHHHHHHHHHHHHHhCCccceEEEEECCCCChHHHHHHHHHHHH
Confidence 999999999999887777776654
Q ss_pred --------------------------------------------------------------------------------
Q 021272 110 -------------------------------------------------------------------------------- 109 (315)
Q Consensus 110 -------------------------------------------------------------------------------- 109 (315)
T Consensus 186 AGl~v~rlInEPtAAAlayg~~~~~~~~vlV~DlGGGT~DvSil~~~~g~~~V~at~Gd~~LGG~DfD~~l~~~~~~~f~ 265 (657)
T PTZ00186 186 AGLNVIRVVNEPTAAALAYGMDKTKDSLIAVYDLGGGTFDISVLEIAGGVFEVKATNGDTHLGGEDFDLALSDYILEEFR 265 (657)
T ss_pred cCCCeEEEEcChHHHHHHHhccCCCCCEEEEEECCCCeEEEEEEEEeCCEEEEEEecCCCCCCchhHHHHHHHHHHHHHh
Confidence
Q ss_pred --------------------------------------------------------------------------------
Q 021272 110 -------------------------------------------------------------------------------- 109 (315)
Q Consensus 110 -------------------------------------------------------------------------------- 109 (315)
T Consensus 266 ~~~~~d~~~~~~~~~rL~~~aEkaK~~LS~~~~~~i~i~~i~~~~~g~~~~~~~ItR~efe~l~~~l~~r~~~~v~~~L~ 345 (657)
T PTZ00186 266 KTSGIDLSKERMALQRVREAAEKAKCELSSAMETEVNLPFITANADGAQHIQMHISRSKFEGITQRLIERSIAPCKQCMK 345 (657)
T ss_pred hhcCCCcccCHHHHHHHHHHHHHHHHHhCCCCceEEEEeeeccCCCCCcceEEEecHHHHHHHHHHHHHHHHHHHHHHHH
Confidence
Q ss_pred --------------------------------------------------------------------------------
Q 021272 110 -------------------------------------------------------------------------------- 109 (315)
Q Consensus 110 -------------------------------------------------------------------------------- 109 (315)
T Consensus 346 ~a~~~~~dId~VvLVGGssriP~V~~~l~~~fg~~~~~~~nPdeaVA~GAAi~a~~l~~~~~~~~l~Dv~p~slgie~~~ 425 (657)
T PTZ00186 346 DAGVELKEINDVVLVGGMTRMPKVVEEVKKFFQKDPFRGVNPDEAVALGAATLGGVLRGDVKGLVLLDVTPLSLGIETLG 425 (657)
T ss_pred HcCCChhhCCEEEEECCcccChHHHHHHHHHhCCCccccCCCchHHHHhHHHHHHHhccccCceEEEeeccccccceecC
Confidence
Q ss_pred ----------------------------------EecCcccccccccccccccccCCCCCCCCcceEEEEEEEecCCcEE
Q 021272 110 ----------------------------------VYEGERARTRDNNLLGKFELSGIPPAPRGVPQITVCFDIDANGILN 155 (315)
Q Consensus 110 ----------------------------------vyqGe~~~~~~n~~Lg~~~l~~i~~~~~g~~~i~v~f~~d~nGil~ 155 (315)
+|||++..+.+|..||.|.|.++|+.|+|.++|+|+|++|.||+|+
T Consensus 426 g~~~~iI~rnt~iP~~~~~~f~t~~dnQ~~v~i~i~qGe~~~~~~n~~lg~~~l~~ip~~~~G~~~I~Vtf~iD~nGiL~ 505 (657)
T PTZ00186 426 GVFTRMIPKNTTIPTKKSQTFSTAADNQTQVGIKVFQGEREMAADNQMMGQFDLVGIPPAPRGVPQIEVTFDIDANGICH 505 (657)
T ss_pred CEEEEEEeCCCEeeEEEeeccccccCCCceEEEEEEEecccccccccccceEEEcCCCCCCCCCCcEEEEEEEcCCCEEE
Confidence 9999999999999999999999999999999999999999999999
Q ss_pred EEeeecccccccceEEecCCCCCCHHHHHHHHHHHHHhhhhchHHHHHHHHHHhHHHHHHHHHhhcccccccccCCHHHH
Q 021272 156 VSAEDKTTGQKNKITITNDKGRLSKEEIEKMVQEAEKYKSEDEEHKKKVEAKNALENYAYNMRNTIKDDQIGSKLSAADK 235 (315)
Q Consensus 156 V~a~~~~t~~~~~l~i~~~~~~Ls~~ei~~~~~~~~~~~~~D~~~~~~~~~kn~LEs~iy~~r~~l~~~~~~~~~~~~e~ 235 (315)
|++.++.||+...++|.... .|++++|+++++++.++..+|...+++.+++|+++.+++.++..+.+ . ..++++++
T Consensus 506 V~a~d~~tg~~~~~~i~~~~-~ls~~~i~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~--~-~~~~~~~~ 581 (657)
T PTZ00186 506 VTAKDKATGKTQNITITANG-GLSKEQIEQMIRDSEQHAEADRVKRELVEVRNNAETQLTTAERQLGE--W-KYVSDAEK 581 (657)
T ss_pred EEEEEccCCcEEEEEeccCc-cCCHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhh--h-ccCCHHHH
Confidence 99999999999999998654 59999999999999999999999999999999999999999999863 2 46899999
Q ss_pred HHHHHHHHHHHHHHhcCccccHHHHHHHHHHHHHHHHHHHHHHHcC
Q 021272 236 KRIEDTIEEAMQWLDSNQLAEADEFEDKMKELESICNPIIAKMYQG 281 (315)
Q Consensus 236 ~~l~~~l~e~e~wL~~~~~a~~~~~~~kl~~L~~~~~pi~~r~~e~ 281 (315)
+.+.+.+..+++||..+ +.+.+.+++++++|++.+.++..+++..
T Consensus 582 ~~~~~~~~~~~~~l~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 626 (657)
T PTZ00186 582 ENVKTLVAELRKAMENP-NVAKDDLAAATDKLQKAVMECGRTEYQQ 626 (657)
T ss_pred HHHHHHHHHHHHHHhcC-CcCHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 99999999999999853 3467999999999999999999887643
No 10
>CHL00094 dnaK heat shock protein 70
Probab=100.00 E-value=1.3e-40 Score=332.38 Aligned_cols=165 Identities=44% Similarity=0.716 Sum_probs=154.6
Q ss_pred EecCcccccccccccccccccCCCCCCCCcceEEEEEEEecCCcEEEEeeecccccccceEEecCCCCCCHHHHHHHHHH
Q 021272 110 VYEGERARTRDNNLLGKFELSGIPPAPRGVPQITVCFDIDANGILNVSAEDKTTGQKNKITITNDKGRLSKEEIEKMVQE 189 (315)
Q Consensus 110 vyqGe~~~~~~n~~Lg~~~l~~i~~~~~g~~~i~v~f~~d~nGil~V~a~~~~t~~~~~l~i~~~~~~Ls~~ei~~~~~~ 189 (315)
+|||++..+.+|..||.|.|.++|+.+.|.++|.|+|++|.||+|+|++.+..+++...+.|.+. .+|+.+++++++++
T Consensus 435 i~~ge~~~~~~n~~lg~~~i~~~~~~~~g~~~i~v~f~id~~Gil~v~~~~~~t~~~~~~~i~~~-~~ls~~~i~~~~~~ 513 (621)
T CHL00094 435 VLQGERELAKDNKSLGTFRLDGIPPAPRGVPQIEVTFDIDANGILSVTAKDKGTGKEQSITIQGA-STLPKDEVERMVKE 513 (621)
T ss_pred EEeeccccCCCCCEEEEEEEeCCCCCCCCCCcEEEEEEECCCCeEEEEEeeccCCceeeeeeccc-hhccHHHHHHHHHH
Confidence 89999999999999999999999999999889999999999999999999999999888888754 46999999999999
Q ss_pred HHHhhhhchHHHHHHHHHHhHHHHHHHHHhhcccccccccCCHHHHHHHHHHHHHHHHHHhcCccccHHHHHHHHHHHHH
Q 021272 190 AEKYKSEDEEHKKKVEAKNALENYAYNMRNTIKDDQIGSKLSAADKKRIEDTIEEAMQWLDSNQLAEADEFEDKMKELES 269 (315)
Q Consensus 190 ~~~~~~~D~~~~~~~~~kn~LEs~iy~~r~~l~~~~~~~~~~~~e~~~l~~~l~e~e~wL~~~~~a~~~~~~~kl~~L~~ 269 (315)
+.++..+|+..+++.+++|+||++||.+|+++. .+...+++++|+++.+.++++++||+++ +.+++++++++|++
T Consensus 514 ~~~~~~~d~~~~~~~~~kn~le~~i~~~~~~l~--~~~~~~~~~~~~~~~~~l~~~~~wl~~~---~~~~~~~~~~~l~~ 588 (621)
T CHL00094 514 AEKNAAEDKEKREKIDLKNQAESLCYQAEKQLK--ELKDKISEEKKEKIENLIKKLRQALQND---NYESIKSLLEELQK 588 (621)
T ss_pred HHHhhhcchhHHHHHHHHHHhHHHHHHHHHHHH--HHhccCCHHHHHHHHHHHHHHHHHHhcC---CHHHHHHHHHHHHH
Confidence 999999999999999999999999999999996 3788999999999999999999999986 45899999999999
Q ss_pred HHHHHHHHHHc
Q 021272 270 ICNPIIAKMYQ 280 (315)
Q Consensus 270 ~~~pi~~r~~e 280 (315)
.++++..+++.
T Consensus 589 ~~~~~~~kl~~ 599 (621)
T CHL00094 589 ALMEIGKEVYS 599 (621)
T ss_pred HHHHHHHHHHh
Confidence 99999998866
No 11
>KOG0102 consensus Molecular chaperones mortalin/PBP74/GRP75, HSP70 superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1e-40 Score=310.95 Aligned_cols=278 Identities=45% Similarity=0.711 Sum_probs=259.1
Q ss_pred CCCCEEEEeccccceEEEEEeCCeEEEEEcCCCCcccceEEEecCC-ceeecHHHHHhHHhCCCcchhhhhhhhcCCCCC
Q 021272 5 GEGPAIGIDLGTTYSCVGVWQHDRVEIIANDQGNRTTPSYVAFTDT-ERLIGDAAKNQVAMNPLNTVFDAKRLIGRRFSD 83 (315)
Q Consensus 5 ~~~~~iGID~GTtns~va~~~~g~~~vi~~~~~~~~~PS~v~~~~~-~~~vG~~A~~~~~~~~~~~~~~~KrliG~~~~~ 83 (315)
....++||||||||||||++.++.+.++.|..|.|++||+|+|+.+ +++||..|++++..||.|+|+..||+|||+|+|
T Consensus 25 ~~~~vigidlgttnS~va~meg~~~kiienaegqrtTpsvva~~kdge~Lvg~~akrqav~n~~ntffatKrligRrf~d 104 (640)
T KOG0102|consen 25 VKGKVIGIDLGTTNSCVAVMEGKKPKIIENAEGQRTTPSVVAFTKDGERLVGMPAKRQAVTNPENTFFATKRLIGRRFDD 104 (640)
T ss_pred CCCceeeEeeeccceeEEEEeCCCceEeecccccccCCceEEEeccccEEecchhhhhhccCCCceEEEehhhhhhhccC
Confidence 3567999999999999999999999999999999999999999765 999999999999999999999999999999999
Q ss_pred hhhhcccCCCCccccCCCCCCCeEEE------------------------------------------------------
Q 021272 84 SSVQGDIKHWPFKVIPGAGDKPTIVV------------------------------------------------------ 109 (315)
Q Consensus 84 ~~v~~~~~~~~~~vv~~~~g~~~i~v------------------------------------------------------ 109 (315)
+++|++++.+||+++...||.++++.
T Consensus 105 ~evq~~~k~vpyKiVk~~ngdaw~e~~G~~~spsqig~~vl~kmk~tae~yl~~~v~~avvtvpAyfndsqRqaTkdag~ 184 (640)
T KOG0102|consen 105 PEVQKDIKQVPYKIVKASNGDAWVEARGKQYSPSQIGAFVLMKMKETAEAYLGKKVKNAVITVPAYFNDSQRQATKDAGQ 184 (640)
T ss_pred HHHHHHHHhCCcceEEccCCcEEEEeCCeEecHHHHHHHHHHHHHHHHHHHcCchhhheeeccHHHHhHHHHHHhHhhhh
Confidence 99999999999999999999999987
Q ss_pred --------------------------------------------------------------------------------
Q 021272 110 -------------------------------------------------------------------------------- 109 (315)
Q Consensus 110 -------------------------------------------------------------------------------- 109 (315)
T Consensus 185 iagl~vlrvineptaaalaygld~k~~g~iaV~dLgggtfdisilei~~gvfevksTngdtflggedfd~~~~~~~v~~f 264 (640)
T KOG0102|consen 185 IAGLNVLRVINEPTAAALAYGLDKKEDGVIAVFDLGGGTFDISILEIEDGVFEVKSTNGDTHLGGEDFDNALVRFIVSEF 264 (640)
T ss_pred hccceeeccCCccchhHHhhcccccCCCceEEEEcCCceeeeeeehhccceeEEEeccCccccChhHHHHHHHHHHHHhh
Confidence
Q ss_pred --------------------------------------------------------------------------------
Q 021272 110 -------------------------------------------------------------------------------- 109 (315)
Q Consensus 110 -------------------------------------------------------------------------------- 109 (315)
T Consensus 265 k~~~gidl~kd~~a~qrl~eaaEkaKielSs~~~tei~lp~iTada~gpkh~~i~~tr~efe~~v~~lI~Rti~p~~~aL 344 (640)
T KOG0102|consen 265 KKEEGIDLTKDRMALQRLREAAEKAKIELSSRQQTEINLPFITADASGPKHLNIELTRGEFEELVPSLIARTIEPCKKAL 344 (640)
T ss_pred hcccCcchhhhHHHHHHHHHHHHhhhhhhhhcccceeccceeeccCCCCeeEEEeecHHHHHHhhHHHHHhhhhHHHHHH
Confidence
Q ss_pred --------------------------------------------------------------------------------
Q 021272 110 -------------------------------------------------------------------------------- 109 (315)
Q Consensus 110 -------------------------------------------------------------------------------- 109 (315)
T Consensus 345 ~dA~~~~~di~EV~lvggmtrmpkv~s~V~e~fgk~p~~~vnPdeava~GAaiqggvl~geVkdvlLLdVtpLsLgietl 424 (640)
T KOG0102|consen 345 RDASLSSSDINEVILVGGMTRMPKVQSTVKELFGKGPSKGVNPDEAVAGGAAIQGGVLSGEVKDVLLLDVTPLSLGIETL 424 (640)
T ss_pred HhccCChhhhhhhhhhcchhhcHHHHHHHHHHhCCCCCCCcCCcchhccchhhccchhhccccceeeeecchHHHHHHhh
Confidence
Q ss_pred -----------------------------------EecCcccccccccccccccccCCCCCCCCcceEEEEEEEecCCcE
Q 021272 110 -----------------------------------VYEGERARTRDNNLLGKFELSGIPPAPRGVPQITVCFDIDANGIL 154 (315)
Q Consensus 110 -----------------------------------vyqGe~~~~~~n~~Lg~~~l~~i~~~~~g~~~i~v~f~~d~nGil 154 (315)
++||||.+..+|.+||.|.+.++||+|+|.|+|.|+|.+|.|||+
T Consensus 425 ggvft~Li~rnttIptkksqvfstaadgqt~V~ikv~qgere~~~dnk~lG~f~l~gipp~pRgvpqieVtfDIdanGI~ 504 (640)
T KOG0102|consen 425 GGVFTKLIPRNTTIPTKKSQVFSTAADGQTQVEIKVFQGEREMVNDNKLLGSFILQGIPPAPRGVPQIEVTFDIDANGIG 504 (640)
T ss_pred hhhheecccCCcccCchhhhheeecccCCceEEEEeeechhhhhccCcccceeeecccCCCCCCCCceeEEEeecCCcee
Confidence 999999999999999999999999999999999999999999999
Q ss_pred EEEeeecccccccceEEecCCCCCCHHHHHHHHHHHHHhhhhchHHHHHHHHHHhHHHHHHHHHhhcccccccccCCHHH
Q 021272 155 NVSAEDKTTGQKNKITITNDKGRLSKEEIEKMVQEAEKYKSEDEEHKKKVEAKNALENYAYNMRNTIKDDQIGSKLSAAD 234 (315)
Q Consensus 155 ~V~a~~~~t~~~~~l~i~~~~~~Ls~~ei~~~~~~~~~~~~~D~~~~~~~~~kn~LEs~iy~~r~~l~~~~~~~~~~~~e 234 (315)
+|+|.++.++|.++++|....+ |+.+|++.++.+++.+...|...+++.+..|..++++|.....+. ++.+.++.++
T Consensus 505 ~vsA~dk~t~K~qsi~i~~sgg-Ls~~ei~~mV~eaer~~~~d~~~~~~ie~~nka~s~~~~te~~~~--~~~~~~~~~~ 581 (640)
T KOG0102|consen 505 TVSAKDKGTGKSQSITIASSGG-LSKDEIELMVGEAERLASTDKEKREAIETKNKADSIIYDTEKSLK--EFEEKIPAEE 581 (640)
T ss_pred eeehhhcccCCccceEEeecCC-CCHHHHHHHHHHHHHHHhhhHHHHHHhhhhcchhheecCchhhhh--hhhhhCcHHH
Confidence 9999999999999999988766 999999999999999999999999999999999999999998886 6788888888
Q ss_pred HHHHHHHHHHHHHHHhcCccccHHHHHHHHHHHHHHHHHHHHHHHcCCCCC
Q 021272 235 KKRIEDTIEEAMQWLDSNQLAEADEFEDKMKELESICNPIIAKMYQGGVAP 285 (315)
Q Consensus 235 ~~~l~~~l~e~e~wL~~~~~a~~~~~~~kl~~L~~~~~pi~~r~~e~~~~~ 285 (315)
..+|...+..+.+.+..-+..+.+++..+...|++...|+..-++...+..
T Consensus 582 ~~~i~~~i~~l~~~~~~~~~~~~~~~k~~~~~l~q~~lkl~es~~k~~~~~ 632 (640)
T KOG0102|consen 582 CEKLEEKISDLRELVANKDSGDMEEIKKAMSALQQASLKLFESAYKNMGAG 632 (640)
T ss_pred HHHHHHHHHHHHHHHhhhccCChhhHHHHHHHHHHhhhHHHHHHHhhhccc
Confidence 899999999999988863333558899999999999999998888664443
No 12
>TIGR02350 prok_dnaK chaperone protein DnaK. Members of this family are the chaperone DnaK, of the DnaK-DnaJ-GrpE chaperone system. All members of the seed alignment were taken from completely sequenced bacterial or archaeal genomes and (except for Mycoplasma sequence) found clustered with other genes of this systems. This model excludes DnaK homologs that are not DnaK itself, such as the heat shock cognate protein HscA (TIGR01991). However, it is not designed to distinguish among DnaK paralogs in eukaryotes. Note that a number of dnaK genes have shadow ORFs in the same reverse (relative to dnaK) reading frame, a few of which have been assigned glutamate dehydrogenase activity. The significance of this observation is unclear; lengths of such shadow ORFs are highly variable as if the presumptive protein product is not conserved.
Probab=100.00 E-value=1.6e-39 Score=323.96 Aligned_cols=164 Identities=49% Similarity=0.778 Sum_probs=152.6
Q ss_pred EecCcccccccccccccccccCCCCCCCCcceEEEEEEEecCCcEEEEeeecccccccceEEecCCCCCCHHHHHHHHHH
Q 021272 110 VYEGERARTRDNNLLGKFELSGIPPAPRGVPQITVCFDIDANGILNVSAEDKTTGQKNKITITNDKGRLSKEEIEKMVQE 189 (315)
Q Consensus 110 vyqGe~~~~~~n~~Lg~~~l~~i~~~~~g~~~i~v~f~~d~nGil~V~a~~~~t~~~~~l~i~~~~~~Ls~~ei~~~~~~ 189 (315)
+|+|++....+|..||.|.+.++++.+.|.++|+|+|++|.||+|+|++.+..+++...+.|... .+|+.+++++++++
T Consensus 431 i~~ge~~~~~~~~~lg~~~i~~~~~~~~g~~~i~v~f~~d~~G~l~v~~~~~~~~~~~~~~i~~~-~~ls~~~~~~~~~~ 509 (595)
T TIGR02350 431 VLQGERPMAADNKSLGRFELTGIPPAPRGVPQIEVTFDIDANGILHVSAKDKGTGKEQSITITAS-SGLSEEEIERMVKE 509 (595)
T ss_pred EEeecccccccCcEeEEEEECCCCCCCCCCceEEEEEEEcCCCeEEEEEEEccCCceEEEEeccc-cccCHHHHHHHHHH
Confidence 89999999999999999999999999999889999999999999999999999999888888765 45999999999999
Q ss_pred HHHhhhhchHHHHHHHHHHhHHHHHHHHHhhcccccccccCCHHHHHHHHHHHHHHHHHHhcCccccHHHHHHHHHHHHH
Q 021272 190 AEKYKSEDEEHKKKVEAKNALENYAYNMRNTIKDDQIGSKLSAADKKRIEDTIEEAMQWLDSNQLAEADEFEDKMKELES 269 (315)
Q Consensus 190 ~~~~~~~D~~~~~~~~~kn~LEs~iy~~r~~l~~~~~~~~~~~~e~~~l~~~l~e~e~wL~~~~~a~~~~~~~kl~~L~~ 269 (315)
+.++...|+..+++.+++|+||++||.+|++|. .+...++++++++|.+.++++++||+++ +.++|++++++|++
T Consensus 510 ~~~~~~~D~~~~~~~e~kn~lEs~iy~~r~~l~--~~~~~~~~~e~~~l~~~l~~~~~wL~~~---d~~~i~~~~~~l~~ 584 (595)
T TIGR02350 510 AEANAEEDKKRKEEIEARNNADSLAYQAEKTLK--EAGDKLPAEEKEKIEKAVAELKEALKGE---DVEEIKAKTEELQQ 584 (595)
T ss_pred HHHhhhcchhHHHHHHHHHHHHHHHHHHHHHHH--HhhccCCHHHHHHHHHHHHHHHHHHhcC---CHHHHHHHHHHHHH
Confidence 999999999999999999999999999999996 3578899999999999999999999987 66799999999999
Q ss_pred HHHHHHHHHH
Q 021272 270 ICNPIIAKMY 279 (315)
Q Consensus 270 ~~~pi~~r~~ 279 (315)
.+.++..+++
T Consensus 585 ~~~~~~~~~~ 594 (595)
T TIGR02350 585 ALQKLAEAMY 594 (595)
T ss_pred HHHHHHHHHh
Confidence 9999987654
No 13
>TIGR01991 HscA Fe-S protein assembly chaperone HscA. The Heat Shock Cognate proteins HscA and HscB act together as chaperones. HscA resembles DnaK but belongs in a separate clade. The apparent function is to aid assembly of iron-sulfur cluster proteins. Homologs from Buchnera and Wolbachia are clearly in the same clade but are highly derived and score lower than some examples of DnaK.
Probab=100.00 E-value=3.1e-39 Score=320.95 Aligned_cols=166 Identities=31% Similarity=0.481 Sum_probs=152.6
Q ss_pred EecCcccccccccccccccccCCCCCCCCcceEEEEEEEecCCcEEEEeeecccccccceEEecCCCCCCHHHHHHHHHH
Q 021272 110 VYEGERARTRDNNLLGKFELSGIPPAPRGVPQITVCFDIDANGILNVSAEDKTTGQKNKITITNDKGRLSKEEIEKMVQE 189 (315)
Q Consensus 110 vyqGe~~~~~~n~~Lg~~~l~~i~~~~~g~~~i~v~f~~d~nGil~V~a~~~~t~~~~~l~i~~~~~~Ls~~ei~~~~~~ 189 (315)
+|||++..+.+|..||.|.|.++|+.|.|.++|.|+|++|.||+|+|++.+..+++...+.|.+.. .|+.+++++++++
T Consensus 421 i~qGe~~~~~~n~~lg~~~l~~i~~~~~g~~~i~v~f~id~~gil~V~a~~~~t~~~~~~~i~~~~-~l~~~~i~~~~~~ 499 (599)
T TIGR01991 421 VVQGERELVEDCRSLARFELRGIPPMVAGAARIRVTFQVDADGLLTVSAQEQSTGVEQSIQVKPSY-GLSDEEIERMLKD 499 (599)
T ss_pred EEeecccccccCceEEEEEEcCCCCCCCCCCcEEEEEEECCCCeEEEEEEECCCCcEEEEeccccc-CCCHHHHHHHHHH
Confidence 899999999999999999999999999999999999999999999999999999999888887654 5999999999999
Q ss_pred HHHhhhhchHHHHHHHHHHhHHHHHHHHHhhcccccccccCCHHHHHHHHHHHHHHHHHHhcCccccHHHHHHHHHHHHH
Q 021272 190 AEKYKSEDEEHKKKVEAKNALENYAYNMRNTIKDDQIGSKLSAADKKRIEDTIEEAMQWLDSNQLAEADEFEDKMKELES 269 (315)
Q Consensus 190 ~~~~~~~D~~~~~~~~~kn~LEs~iy~~r~~l~~~~~~~~~~~~e~~~l~~~l~e~e~wL~~~~~a~~~~~~~kl~~L~~ 269 (315)
+.++..+|...++..+++|++|+++|.++..+. ++...+++++|+++...++++++||+++ +.+++++++++|++
T Consensus 500 ~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~~~~~~l~~~---~~~~~~~~~~~l~~ 574 (599)
T TIGR01991 500 SFKHAEEDMYARALAEQKVEAERILEALQAALA--ADGDLLSEDERAAIDAAMEALQKALQGD---DADAIKAAIEALEE 574 (599)
T ss_pred HHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH--HhhccCCHHHHHHHHHHHHHHHHHHhcC---CHHHHHHHHHHHHH
Confidence 999999999999999999999999999999885 3456889999999999999999999986 56899999999999
Q ss_pred HHHHHHHHHHcC
Q 021272 270 ICNPIIAKMYQG 281 (315)
Q Consensus 270 ~~~pi~~r~~e~ 281 (315)
.+.++..+.+..
T Consensus 575 ~~~~~~~~~~~~ 586 (599)
T TIGR01991 575 ATDNFAARRMDR 586 (599)
T ss_pred HHHHHHHHHHhh
Confidence 999999766543
No 14
>PRK05183 hscA chaperone protein HscA; Provisional
Probab=100.00 E-value=4e-39 Score=320.84 Aligned_cols=166 Identities=29% Similarity=0.470 Sum_probs=153.1
Q ss_pred EecCcccccccccccccccccCCCCCCCCcceEEEEEEEecCCcEEEEeeecccccccceEEecCCCCCCHHHHHHHHHH
Q 021272 110 VYEGERARTRDNNLLGKFELSGIPPAPRGVPQITVCFDIDANGILNVSAEDKTTGQKNKITITNDKGRLSKEEIEKMVQE 189 (315)
Q Consensus 110 vyqGe~~~~~~n~~Lg~~~l~~i~~~~~g~~~i~v~f~~d~nGil~V~a~~~~t~~~~~l~i~~~~~~Ls~~ei~~~~~~ 189 (315)
+|||++..+.+|..||+|.|.++|+.|+|.++|.|+|++|.||+|+|++.+..+++...+.|.+.. .|+.+++++++++
T Consensus 437 v~qGe~~~~~~n~~lg~~~i~~i~~~~~g~~~i~v~f~~d~~Gil~V~a~~~~~~~~~~~~i~~~~-~ls~~~i~~~~~~ 515 (616)
T PRK05183 437 VVQGERELVADCRSLARFELRGIPPMAAGAARIRVTFQVDADGLLSVTAMEKSTGVEASIQVKPSY-GLTDDEIARMLKD 515 (616)
T ss_pred EecccccccccccEEEEEEeCCCCCCCCCCccEEEEEEECCCCeEEEEEEEcCCCcEEEecccccc-cCCHHHHHHHHHH
Confidence 899999999999999999999999999999899999999999999999999999999988887654 4999999999999
Q ss_pred HHHhhhhchHHHHHHHHHHhHHHHHHHHHhhcccccccccCCHHHHHHHHHHHHHHHHHHhcCccccHHHHHHHHHHHHH
Q 021272 190 AEKYKSEDEEHKKKVEAKNALENYAYNMRNTIKDDQIGSKLSAADKKRIEDTIEEAMQWLDSNQLAEADEFEDKMKELES 269 (315)
Q Consensus 190 ~~~~~~~D~~~~~~~~~kn~LEs~iy~~r~~l~~~~~~~~~~~~e~~~l~~~l~e~e~wL~~~~~a~~~~~~~kl~~L~~ 269 (315)
+.++..+|...+++.+++|++|.++|.+++.+.+ ....+++++|+++.+.++++++||..+ +.++|++++++|++
T Consensus 516 ~~~~~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~~~~l~~~---d~~~~~~~~~~l~~ 590 (616)
T PRK05183 516 SMSHAEEDMQARALAEQKVEAERVLEALQAALAA--DGDLLSAAERAAIDAAMAALREVAQGD---DADAIEAAIKALDK 590 (616)
T ss_pred HHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH--hhccCCHHHHHHHHHHHHHHHHHHhcC---CHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999963 346789999999999999999999876 67899999999999
Q ss_pred HHHHHHHHHHcC
Q 021272 270 ICNPIIAKMYQG 281 (315)
Q Consensus 270 ~~~pi~~r~~e~ 281 (315)
.+.++..+.+..
T Consensus 591 ~~~~~~~~~~~~ 602 (616)
T PRK05183 591 ATQEFAARRMDR 602 (616)
T ss_pred HHHHHHHHHHhc
Confidence 999999866543
No 15
>PF00012 HSP70: Hsp70 protein; InterPro: IPR013126 Heat shock proteins, Hsp70 chaperones help to fold many proteins. Hsp70 assisted folding involves repeated cycles of substrate binding and release. Hsp70 activity is ATP dependent. Hsp70 proteins are made up of two regions: the amino terminus is the ATPase domain and the carboxyl terminus is the substrate binding region []. Hsp70 proteins have an average molecular weight of 70 kDa [, , ]. In most species,there are many proteins that belong to the hsp70 family. Some of these are only expressed under stress conditions (strictly inducible), while some are present in cells under normal growth conditions and are not heat-inducible (constitutive or cognate) [, ]. Hsp70 proteins can be found in different cellular compartments(nuclear, cytosolic, mitochondrial, endoplasmic reticulum, for example).; PDB: 2P32_D 3D2F_A 2QXL_A 3D2E_C 3C7N_A 3FE1_C 4ANI_C 2V7Y_A 2KHO_A 3DPQ_B ....
Probab=100.00 E-value=9.9e-37 Score=304.73 Aligned_cols=266 Identities=43% Similarity=0.784 Sum_probs=242.8
Q ss_pred EEEEeccccceEEEEEeCCeEEEEEcCCCCcccceEEEecCCceeecHHHHHhHHhCCCcchhhhhhhhcCCCCChhhhc
Q 021272 9 AIGIDLGTTYSCVGVWQHDRVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPLNTVFDAKRLIGRRFSDSSVQG 88 (315)
Q Consensus 9 ~iGID~GTtns~va~~~~g~~~vi~~~~~~~~~PS~v~~~~~~~~vG~~A~~~~~~~~~~~~~~~KrliG~~~~~~~v~~ 88 (315)
|||||||||||+||++.+|.+++|.|..|+|++||+|+|.+++++||..|...+.++|.++++++|||||++++++.++.
T Consensus 1 viGID~Gt~~~~va~~~~~~~~ii~~~~~~~~~ps~v~~~~~~~~~G~~a~~~~~~~~~~~~~~~k~liG~~~~~~~~~~ 80 (602)
T PF00012_consen 1 VIGIDLGTTNSKVAVFKNGKPEIILNEEGKRKTPSVVSFSDNERLVGEDAKSQMIRNPKNTIYNLKRLIGRKFDDPDVQK 80 (602)
T ss_dssp EEEEEE-SSEEEEEEEETTEEEEE--TTS-SSEESEEEEESSCEEETHHHHHTTTTSGGGEEESGGGTTTSBTTSHHHHH
T ss_pred CEEEEeccCCEEEEEEEeccccccccccccccccceeeEeeecccCCcchhhhcccccccccccccccccccccccccch
Confidence 79999999999999999999999999999999999999999899999999999999999999999999999999999999
Q ss_pred ccCCCCccccCCCCCCCeEEE-----------------------------------------------------------
Q 021272 89 DIKHWPFKVIPGAGDKPTIVV----------------------------------------------------------- 109 (315)
Q Consensus 89 ~~~~~~~~vv~~~~g~~~i~v----------------------------------------------------------- 109 (315)
+.+.+||.++.+++|.+.+.+
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~~~~~~~~~vitVPa~~~~~qr~~~~~Aa~~ 160 (602)
T PF00012_consen 81 EKKKFPYKVVEDPDGKVYFEVDYDGKSKTYSPEELSAMILKYLKEMAEKYLGEKVTDVVITVPAYFTDEQRQALRDAAEL 160 (602)
T ss_dssp HHTTSSSEEEEETTTEEEEEEEETTEEEEEEHHHHHHHHHHHHHHHHHHHHTSBEEEEEEEE-TT--HHHHHHHHHHHHH
T ss_pred hhhcccccccccccccccccccccccceeeeeecccccchhhhcccchhhcccccccceeeechhhhhhhhhcccccccc
Confidence 999999999988888888876
Q ss_pred --------------------------------------------------------------------------------
Q 021272 110 -------------------------------------------------------------------------------- 109 (315)
Q Consensus 110 -------------------------------------------------------------------------------- 109 (315)
T Consensus 161 agl~~~~li~Ep~Aaa~~y~~~~~~~~~~vlv~D~Gggt~dvs~~~~~~~~~~v~~~~~~~~lGG~~~D~~l~~~~~~~~ 240 (602)
T PF00012_consen 161 AGLNVLRLINEPTAAALAYGLERSDKGKTVLVVDFGGGTFDVSVVEFSNGQFEVLATAGDNNLGGRDFDEALAEYLLEKF 240 (602)
T ss_dssp TT-EEEEEEEHHHHHHHHTTTTSSSSEEEEEEEEEESSEEEEEEEEEETTEEEEEEEEEETTCSHHHHHHHHHHHHHHHH
T ss_pred cccccceeecccccccccccccccccccceeccccccceEeeeehhcccccccccccccccccccceecceeeccccccc
Confidence
Q ss_pred --------------------------------------------------------------------------------
Q 021272 110 -------------------------------------------------------------------------------- 109 (315)
Q Consensus 110 -------------------------------------------------------------------------------- 109 (315)
T Consensus 241 ~~~~~~d~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~~~~~~~~~~~~~~~~~~~itr~~fe~l~~~~~~~~~~~i~~~l~ 320 (602)
T PF00012_consen 241 KKKYKIDLRENPRAMARLLEAAEKAKEQLSSNDNTEITISIESLYDDGEDFSITITREEFEELCEPLLERIIEPIEKALK 320 (602)
T ss_dssp HHHHSS-GTCSHHHHHHHHHHHHHHHHHTTTSSSSEEEEEEEEEETTTEEEEEEEEHHHHHHHTHHHHHHTHHHHHHHHH
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccceecccccccccccccccccccc
Confidence
Q ss_pred --------------------------------------------------------------------------------
Q 021272 110 -------------------------------------------------------------------------------- 109 (315)
Q Consensus 110 -------------------------------------------------------------------------------- 109 (315)
T Consensus 321 ~~~~~~~~i~~V~lvGG~sr~p~v~~~l~~~f~~~~~~~~~p~~aVA~GAa~~a~~~~~~~~~~~~~~~d~~~~~~~i~~ 400 (602)
T PF00012_consen 321 DAGLKKEDIDSVLLVGGSSRIPYVQEALKELFGKKISKSVNPDEAVARGAALYAAILSGSFRVKDIKIIDVTPFSIGIEV 400 (602)
T ss_dssp HTT--GGGESEEEEESGGGGSHHHHHHHHHHTTSEEB-SS-TTTHHHHHHHHHHHHHHTSCSSTSSCESEBESSEEEEEE
T ss_pred cccccccccceeEEecCcccchhhhhhhhhccccccccccccccccccccccchhhhccccccccccccccccccccccc
Confidence
Q ss_pred ------------------------------------EecCcccccccccccccccccCCCCCCCCcceEEEEEEEecCCc
Q 021272 110 ------------------------------------VYEGERARTRDNNLLGKFELSGIPPAPRGVPQITVCFDIDANGI 153 (315)
Q Consensus 110 ------------------------------------vyqGe~~~~~~n~~Lg~~~l~~i~~~~~g~~~i~v~f~~d~nGi 153 (315)
+|+|+...+.+|..||.|.+.++++.+.|.++|.|+|++|.||+
T Consensus 401 ~~~~~~~ii~~~t~iP~~~~~~~~t~~~~~~~i~i~i~~g~~~~~~~~~~ig~~~i~~i~~~~~g~~~i~v~f~ld~~Gi 480 (602)
T PF00012_consen 401 SNGKFSKIIPKNTPIPSKKSKSFKTVTDNQTSISIDIYEGESSSFEDNKKIGSYTISGIPPAPKGKPKIKVTFELDENGI 480 (602)
T ss_dssp TTTEEEEEESTTEBSSEEEEEEEEESSTTCSEEEEEEEESSSSBGGGSEEEEEEEEES-SSSSTTSSEEEEEEEEETTSE
T ss_pred cccccccccccccccccccccccchhccccccccceeeeccccccccccccccccccccccccccccceeeEEeeeeeee
Confidence 99999999999999999999999999999999999999999999
Q ss_pred EEEEeeecccccccceEEecCCCCCCHHHHHHHHHHHHHhhhhchHHHHHHHHHHhHHHHHHHHHhhcccccccccCCHH
Q 021272 154 LNVSAEDKTTGQKNKITITNDKGRLSKEEIEKMVQEAEKYKSEDEEHKKKVEAKNALENYAYNMRNTIKDDQIGSKLSAA 233 (315)
Q Consensus 154 l~V~a~~~~t~~~~~l~i~~~~~~Ls~~ei~~~~~~~~~~~~~D~~~~~~~~~kn~LEs~iy~~r~~l~~~~~~~~~~~~ 233 (315)
|+|++.+..++....+.+..... +++++++++.+++.++...|+..++..+++|+||+++|++|+.+++. ...++++
T Consensus 481 l~V~~~~~~~~~~~~~~v~~~~~-~~~~~~~~~~~~~~~~~~~d~~~~~~~e~kn~lE~~i~~~r~~l~~~--~~~~~~~ 557 (602)
T PF00012_consen 481 LSVEAAEVETGKEEEVTVKKKET-LSKEEIEELKKKLEEMDEEDEERRERAEAKNELESYIYELRDKLEED--KDFVSEE 557 (602)
T ss_dssp EEEEEEETTTTEEEEEEEESSSS-SCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCC--GGGSTHH
T ss_pred hhhhhcccccccccccccccccc-cccccccccccccchhhhhhhhhhhccccHHHHHHHHHHHHHHHHhh--hccCCHH
Confidence 99999999888888888877766 99999999999999999999999999999999999999999999743 6677776
Q ss_pred HHHHHHHHHHHHHHHHhc-CccccHHHHHHHHHHHHHHHHHHHHHHHc
Q 021272 234 DKKRIEDTIEEAMQWLDS-NQLAEADEFEDKMKELESICNPIIAKMYQ 280 (315)
Q Consensus 234 e~~~l~~~l~e~e~wL~~-~~~a~~~~~~~kl~~L~~~~~pi~~r~~e 280 (315)
++ .+.+++..+||++ .+.++.++|++|+++|+++.+||..|++.
T Consensus 558 ~~---~~~l~~~~~wl~~~~~~~~~~e~~~kl~~L~~~~~~i~~r~~~ 602 (602)
T PF00012_consen 558 EK---KKKLKETSDWLEDNGEDADKEEYKEKLEELKKVIEPIKKRYMQ 602 (602)
T ss_dssp HH---HHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred HH---HHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 66 7788899999998 46778999999999999999999999873
No 16
>PRK01433 hscA chaperone protein HscA; Provisional
Probab=100.00 E-value=8.3e-35 Score=287.97 Aligned_cols=158 Identities=27% Similarity=0.415 Sum_probs=141.6
Q ss_pred EecCcccccccccccccccccCCCCCCCCcceEEEEEEEecCCcEEEEeeecccccccceEEecCCCCCCHHHHHHHHHH
Q 021272 110 VYEGERARTRDNNLLGKFELSGIPPAPRGVPQITVCFDIDANGILNVSAEDKTTGQKNKITITNDKGRLSKEEIEKMVQE 189 (315)
Q Consensus 110 vyqGe~~~~~~n~~Lg~~~l~~i~~~~~g~~~i~v~f~~d~nGil~V~a~~~~t~~~~~l~i~~~~~~Ls~~ei~~~~~~ 189 (315)
+|||++..+.+|..||+|.|.++|+.|+|.++|+|+|++|.||+|+|++.+..+|+...+.|.... .|+++|+++++++
T Consensus 415 v~qGe~~~~~~n~~lg~~~l~~i~~~~~g~~~i~vtf~id~~Gil~V~a~~~~t~~~~~~~i~~~~-~ls~~ei~~~~~~ 493 (595)
T PRK01433 415 ILQGEREMAADCRSLARFELKGLPPMKAGSIRAEVTFAIDADGILSVSAYEKISNTSHAIEVKPNH-GIDKTEIDIMLEN 493 (595)
T ss_pred EEeccccccCCCcEEEEEEEcCCCCCCCCCccEEEEEEECCCCcEEEEEEEcCCCcEEEEEecCCC-CCCHHHHHHHHHH
Confidence 899999999999999999999999999999999999999999999999999999999999997654 4999999999999
Q ss_pred HHHhhhhchHHHHHHHHHHhHHHHHHHHHhhcccccccccCCHHHHHHHHHHHHHHHHHHhcCccccHHHHHHHHHHHHH
Q 021272 190 AEKYKSEDEEHKKKVEAKNALENYAYNMRNTIKDDQIGSKLSAADKKRIEDTIEEAMQWLDSNQLAEADEFEDKMKELES 269 (315)
Q Consensus 190 ~~~~~~~D~~~~~~~~~kn~LEs~iy~~r~~l~~~~~~~~~~~~e~~~l~~~l~e~e~wL~~~~~a~~~~~~~kl~~L~~ 269 (315)
+.++..+|...++..+++|+++++++..++.+. ++...+++++|+++.+.++++++||+.+ +...+.+.+++|+.
T Consensus 494 ~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~i~~~~~~~~~~l~~~---~~~~~~~~~~~~~~ 568 (595)
T PRK01433 494 AYKNAKIDYTTRLLQEAVIEAEALIFNIERAIA--ELTTLLSESEISIINSLLDNIKEAVHAR---DIILINNSIKEFKS 568 (595)
T ss_pred HHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH--HhhccCCHHHHHHHHHHHHHHHHHHhcC---CHHHHHHHHHHHHH
Confidence 999999999999999999999999999999996 3666789999999999999999999875 44556666666665
Q ss_pred HHHH
Q 021272 270 ICNP 273 (315)
Q Consensus 270 ~~~p 273 (315)
.+.+
T Consensus 569 ~~~~ 572 (595)
T PRK01433 569 KIKK 572 (595)
T ss_pred HHHH
Confidence 5555
No 17
>KOG0103 consensus Molecular chaperones HSP105/HSP110/SSE1, HSP70 superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.5e-35 Score=281.09 Aligned_cols=270 Identities=29% Similarity=0.484 Sum_probs=238.4
Q ss_pred EEEEeccccceEEEEEeCCeEEEEEcCCCCcccceEEEecCCceeecHHHHHhHHhCCCcchhhhhhhhcCCCCChhhhc
Q 021272 9 AIGIDLGTTYSCVGVWQHDRVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPLNTVFDAKRLIGRRFSDSSVQG 88 (315)
Q Consensus 9 ~iGID~GTtns~va~~~~g~~~vi~~~~~~~~~PS~v~~~~~~~~vG~~A~~~~~~~~~~~~~~~KrliG~~~~~~~v~~ 88 (315)
++|||||..||.||+.+.+.+++|.|+.+.|.+|++|+|+..+|++|.+|+++..+|+.+++..+|||+||+|+||.+|.
T Consensus 3 vvG~D~Gn~nc~iavAr~~gIe~i~nd~Snr~TPa~vsfg~K~R~~G~aak~~~~~n~kntv~~~KRl~Gr~f~dP~~q~ 82 (727)
T KOG0103|consen 3 VVGFDLGNENCYIAVARQGGIEVVANDYSNRETPAIVSFGPKNRFIGVAAKNQQTTNVKNTVSNFKRLIGRKFSDPEVQR 82 (727)
T ss_pred ceeeeccccceeeeeeccCCceeeeeccccccCcceeeeccccceeeeccccceeecccccchhhhhhhccccCChHhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCccccCCCCCCCeEEE-----------------------------------------------------------
Q 021272 89 DIKHWPFKVIPGAGDKPTIVV----------------------------------------------------------- 109 (315)
Q Consensus 89 ~~~~~~~~vv~~~~g~~~i~v----------------------------------------------------------- 109 (315)
+.+++||.++..+||.+++.+
T Consensus 83 ~~~~~~~~vv~~~dg~vgi~v~ylge~~~ft~~Qv~Am~l~klk~~ae~~l~~~v~DcvIavP~~FTd~qRravldAA~i 162 (727)
T KOG0103|consen 83 EIKSLPRSVVQLKDGDVGIKVEYLGEKHPFTPEQVLAMLLTKLKATAEKNLKSPVSDCVIAVPSYFTDSQRRAVLDAARI 162 (727)
T ss_pred cccccchheeecCCCCcceeehcccCCCCCChHHHHHHHHHHHHHHHHHhcCCCCCCeeEeccccccHHHHHHHHhHHhh
Confidence 999999999999999999998
Q ss_pred --------------------------------------------------------------------------------
Q 021272 110 -------------------------------------------------------------------------------- 109 (315)
Q Consensus 110 -------------------------------------------------------------------------------- 109 (315)
T Consensus 163 agLn~lrLmnd~TA~Al~ygiyKtDLP~~~ekpr~v~fvD~GHS~~q~si~aF~kG~lkvl~ta~D~~lGgr~fDe~L~~ 242 (727)
T KOG0103|consen 163 AGLNPLRLMNDTTATALAYGIYKTDLPENEEKPRNVVFVDIGHSSYQVSIAAFTKGKLKVLATAFDRKLGGRDFDEALID 242 (727)
T ss_pred cCccceeeeecchHhHhhcccccccCCCcccCcceEEEEecccccceeeeeeeccCcceeeeeecccccccchHHHHHHH
Confidence
Q ss_pred --------------------------------------------------------------------------------
Q 021272 110 -------------------------------------------------------------------------------- 109 (315)
Q Consensus 110 -------------------------------------------------------------------------------- 109 (315)
T Consensus 243 hfa~efk~kykidv~sn~kA~lRL~~~~EKlKK~lSAN~~~plNIEcfM~d~dvs~~i~ReEfEel~~plL~rv~~p~~~ 322 (727)
T KOG0103|consen 243 HFAKEFKTKYKIDVRSNAKAKLRLLAECEKLKKVLSANTELPLNIECFMNDKDVSSKIKREEFEELSAPLLERVEVPLLK 322 (727)
T ss_pred HHHHHhccccccchhhchhHHHHHHHHHHHHHHHhhcCcCCCcchhheeecchhhhhccHHHHHHHHHHHHHhhhHHHHH
Confidence
Q ss_pred --------------------------------------------------------------------------------
Q 021272 110 -------------------------------------------------------------------------------- 109 (315)
Q Consensus 110 -------------------------------------------------------------------------------- 109 (315)
T Consensus 323 ~l~d~~l~~edi~~VEiVGg~sripaike~Is~~Fgke~s~TlN~dEavarG~ALqcAIlSP~frVRef~v~Di~pysIs 402 (727)
T KOG0103|consen 323 ALADAKLKVEDIHAVEIVGGLSRIPAIKEMISDFFGKELSRTLNQDEAVARGAALQCAILSPTFRVREFSVEDIVPYSIS 402 (727)
T ss_pred HHHHhcCccccceeEEEecCcccchHHHHHHHHHhCCcccccccHHHHHHHhHHHHHHhcCccccceecceecccceeEE
Confidence
Q ss_pred -----------------------------------------EecCcccccccccccccccccCCCCCCC-CcceEEEEEE
Q 021272 110 -----------------------------------------VYEGERARTRDNNLLGKFELSGIPPAPR-GVPQITVCFD 147 (315)
Q Consensus 110 -----------------------------------------vyqGe~~~~~~n~~Lg~~~l~~i~~~~~-g~~~i~v~f~ 147 (315)
.|.+...+..+...|++|.+.++.+... ...+++|+..
T Consensus 403 ~~w~~~~ed~~~~~evF~~~~~~p~~K~lT~~Rk~~F~lea~yt~~~~lp~~~~kI~~~~i~~v~~~~~ge~skVKvkvr 482 (727)
T KOG0103|consen 403 LRWVKQGEDGGSVTEVFPKGHPSPSVKLLTFNRKGPFTLEAKYTKVNKLPYPKPKIEKWTITGVTPSEDGEFSKVKVKVR 482 (727)
T ss_pred EEeccccccCCCceeeecCCCCCCCceEEEEEecCceEEEEEeccccccCCCCCceeeEEecccccCccccccceeEEEE
Confidence 5555455556667788999988887766 4567999999
Q ss_pred EecCCcEEEEeeecc----------------------------cc----cccceEEecCC-CCCCHHHHHHHHHHHHHhh
Q 021272 148 IDANGILNVSAEDKT----------------------------TG----QKNKITITNDK-GRLSKEEIEKMVQEAEKYK 194 (315)
Q Consensus 148 ~d~nGil~V~a~~~~----------------------------t~----~~~~l~i~~~~-~~Ls~~ei~~~~~~~~~~~ 194 (315)
+|.+||++|+.+... .+ +...+++.... ..|+..+++..++++.+|.
T Consensus 483 ~n~~Gi~~i~sA~~~e~~~veev~~~~~e~~~~~~~~~~~~~~~~k~kvk~~~L~~~~~~~~~l~~~~l~~~~e~E~~M~ 562 (727)
T KOG0103|consen 483 LNEHGIDTIESATLIEDIEVEEVPEEPMEYDDAAKMLERIAPAENKKKVKKVDLPIEAYTKGALITDELELYIEKENKMI 562 (727)
T ss_pred EcCccceeeecceeecccchhccccchhhhhcchhhhhhhccccccceeeeccccceeeeccccCHHHHHHHHHHHHHhh
Confidence 999999999765211 01 11223343333 3699999999999999999
Q ss_pred hhchHHHHHHHHHHhHHHHHHHHHhhcccccccccCCHHHHHHHHHHHHHHHHHHhc-CccccHHHHHHHHHHHHHHHHH
Q 021272 195 SEDEEHKKKVEAKNALENYAYNMRNTIKDDQIGSKLSAADKKRIEDTIEEAMQWLDS-NQLAEADEFEDKMKELESICNP 273 (315)
Q Consensus 195 ~~D~~~~~~~~~kn~LEs~iy~~r~~l~~~~~~~~~~~~e~~~l~~~l~e~e~wL~~-~~~a~~~~~~~kl~~L~~~~~p 273 (315)
..|+...++.+++|.||+|||++|++|. +.|.++++++++++|...|+.+++|||+ +++.+...|..|+.+|+++.+
T Consensus 563 ~qD~~~~Et~D~KNaleeyVY~~R~kl~-~~y~~f~~~a~~e~~~~~l~~~E~wlyedGed~~k~~Y~~kl~elk~~g~- 640 (727)
T KOG0103|consen 563 LQDKLEKETVDAKNALEEYVYDMRDKLS-DKYEDFITDAEREKLKKMLTDTEEWLYEDGEDQTKAVYVAKLEELKKLGD- 640 (727)
T ss_pred hhhhhhhhhccHHHHHHHHHHHHHHHhh-hhhhhhcCHHHHHHHHHHHHHHHHHHHhcCcccchHHHHHHHHHHHhhhh-
Confidence 9999999999999999999999999997 5899999999999999999999999999 899999999999999999986
Q ss_pred HHHHHHcC
Q 021272 274 IIAKMYQG 281 (315)
Q Consensus 274 i~~r~~e~ 281 (315)
..|+.+.
T Consensus 641 -~~r~~e~ 647 (727)
T KOG0103|consen 641 -KKRFDEN 647 (727)
T ss_pred -hhhhhhh
Confidence 5555544
No 18
>COG0443 DnaK Molecular chaperone [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=6.1e-32 Score=266.34 Aligned_cols=163 Identities=47% Similarity=0.776 Sum_probs=153.6
Q ss_pred EecCcccccccccccccccccCCCCCCCCcceEEEEEEEecCCcEEEEeeecccccccceEEecCCCCCCHHHHHHHHHH
Q 021272 110 VYEGERARTRDNNLLGKFELSGIPPAPRGVPQITVCFDIDANGILNVSAEDKTTGQKNKITITNDKGRLSKEEIEKMVQE 189 (315)
Q Consensus 110 vyqGe~~~~~~n~~Lg~~~l~~i~~~~~g~~~i~v~f~~d~nGil~V~a~~~~t~~~~~l~i~~~~~~Ls~~ei~~~~~~ 189 (315)
++||++...++|..+|.|.+.++|+.|+|.+.|.|+|.+|.||++.|++.++.+++...++|..... |++++|+.+.+.
T Consensus 416 v~qge~~~~~~~~~lg~f~l~~i~~~~~g~~~i~v~f~iD~~gi~~v~a~~~~~~k~~~i~i~~~~~-ls~~~i~~~~~~ 494 (579)
T COG0443 416 VFQGEREMAADNKSLGRFELDGIPPAPRGVPQIEVTFDIDANGILNVTAKDLGTGKEQSITIKASSG-LSDEEIERMVED 494 (579)
T ss_pred EEecchhhcccCceeEEEECCCCCCCCCCCCceEEEeccCCCcceEeeeecccCCceEEEEEecCCC-CCHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999888 999999999999
Q ss_pred HHHhhhhchHHHHHHHHHHhHHHHHHHHHhhcccccccccCCHHHHHHHHHHHHHHHHHHhcCccccHHHHHHHHHHHHH
Q 021272 190 AEKYKSEDEEHKKKVEAKNALENYAYNMRNTIKDDQIGSKLSAADKKRIEDTIEEAMQWLDSNQLAEADEFEDKMKELES 269 (315)
Q Consensus 190 ~~~~~~~D~~~~~~~~~kn~LEs~iy~~r~~l~~~~~~~~~~~~e~~~l~~~l~e~e~wL~~~~~a~~~~~~~kl~~L~~ 269 (315)
+..+...|...++..+.+|.++.+++.++..|.+ .. .++.++++++...+.+++.||+. + .+++..+.++|..
T Consensus 495 a~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~l~~--~~-~~~~~~~~~~~~~~~~~~~~l~~-~---~~~~~~~~~~l~~ 567 (579)
T COG0443 495 AEANAALDKKFRELVEARNEAESLIYSLEKALKE--IV-KVSEEEKEKIEEAITDLEEALEG-E---KEEIKAKIEELQE 567 (579)
T ss_pred HHHHHhhHHHHHHHHHhhHHHHHHHHHHHHHHhh--hc-cCCHHHHHHHHHHHHHHHHHHhc-c---HHHHHHHHHHHHH
Confidence 9999999999999999999999999999999974 33 88899999999999999999998 2 8899999999999
Q ss_pred HHHHHHHHHHc
Q 021272 270 ICNPIIAKMYQ 280 (315)
Q Consensus 270 ~~~pi~~r~~e 280 (315)
...++..++++
T Consensus 568 ~~~~~~~~~~~ 578 (579)
T COG0443 568 VTQKLAEKKYQ 578 (579)
T ss_pred HHHHHHHHHhc
Confidence 99999887764
No 19
>KOG0104 consensus Molecular chaperones GRP170/SIL1, HSP70 superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=99.93 E-value=1.5e-24 Score=209.15 Aligned_cols=106 Identities=18% Similarity=0.397 Sum_probs=99.9
Q ss_pred CCCHHHHHHHHHHHHHhhhhchHHHHHHHHHHhHHHHHHHHHhhcccccccccCCHHHHHHHHHHHHHHHHHHhc-Cccc
Q 021272 177 RLSKEEIEKMVQEAEKYKSEDEEHKKKVEAKNALENYAYNMRNTIKDDQIGSKLSAADKKRIEDTIEEAMQWLDS-NQLA 255 (315)
Q Consensus 177 ~Ls~~ei~~~~~~~~~~~~~D~~~~~~~~~kn~LEs~iy~~r~~l~~~~~~~~~~~~e~~~l~~~l~e~e~wL~~-~~~a 255 (315)
-|.+..++...+++..+...|+...++.++.|.||.++|++.+++.+++|..+.+++++..|.+.+..+.+||++ ....
T Consensus 633 ~l~~~~~~~~~~kl~d~~~~e~~k~~re~a~N~LE~~l~e~q~~l~d~ey~e~at~EEk~~L~~~~~~~~~Wleed~~~~ 712 (902)
T KOG0104|consen 633 VLNENALDAAVAKLEDFVQKEKEKSEREEASNELEAFLFELQDKLDDDEYAEVATEEEKKILKKKVSLLMDWLEEDGSQT 712 (902)
T ss_pred CCchhHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhcCchHhhhcCHHHHHHHHHHHHHHHHHHHhhcccc
Confidence 489999999999999999999999999999999999999999999989999999999999999999999999998 5677
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHcCC
Q 021272 256 EADEFEDKMKELESICNPIIAKMYQGG 282 (315)
Q Consensus 256 ~~~~~~~kl~~L~~~~~pi~~r~~e~~ 282 (315)
..++|.+++.+|++++..+.+|..++.
T Consensus 713 ~t~~~~ek~a~L~~l~~~~~~R~ee~k 739 (902)
T KOG0104|consen 713 PTEMLTEKLAELKKLETSKNFREEERK 739 (902)
T ss_pred chhHHHHHHHHHHHHHhhhhHHHHHHH
Confidence 899999999999999999999988764
No 20
>PRK11678 putative chaperone; Provisional
Probab=99.53 E-value=9.6e-15 Score=140.61 Aligned_cols=178 Identities=16% Similarity=0.163 Sum_probs=111.8
Q ss_pred EEEEeccccceEEEEEeCCeEEEEEcCCCCcccceEEEec----------------------------------------
Q 021272 9 AIGIDLGTTYSCVGVWQHDRVEIIANDQGNRTTPSYVAFT---------------------------------------- 48 (315)
Q Consensus 9 ~iGID~GTtns~va~~~~g~~~vi~~~~~~~~~PS~v~~~---------------------------------------- 48 (315)
++|||||||||+||++.+|.+++|+++.|.+++||+|+|.
T Consensus 2 ~iGID~GTtNs~va~~~~~~~~li~~~~~~~~~pS~v~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (450)
T PRK11678 2 FIGFDYGTANCSVAVMRDGKPRLLPLENDSTYLPSTLCAPTREAVSEWLYRHLDVPAYDDERQALLRRAIRYNREEDIDV 81 (450)
T ss_pred eEEEecCccceeeEEeeCCceEEEEcCCCCCcCCeeeeccCchhhhhhhhhhcccCcccchhhhhhhhhhhhcccccccc
Confidence 6999999999999999999999999999999999999994
Q ss_pred -CCceeecHHHHHhHHhCCCcc--hhhhhhhhcCCCCChhh--------hcccCCCCcc---ccCCCCCCCeEEE--Eec
Q 021272 49 -DTERLIGDAAKNQVAMNPLNT--VFDAKRLIGRRFSDSSV--------QGDIKHWPFK---VIPGAGDKPTIVV--VYE 112 (315)
Q Consensus 49 -~~~~~vG~~A~~~~~~~~~~~--~~~~KrliG~~~~~~~v--------~~~~~~~~~~---vv~~~~g~~~i~v--vyq 112 (315)
++..+||..|+.++..+|..+ +.++||+||.....+.. ...+.++.-. ....+-..+.|.+ .|.
T Consensus 82 ~~~~~~~G~~A~~~~~~~p~~~r~i~s~Kr~lg~~~~~~~~~~~~e~l~a~iL~~lk~~ae~~~g~~v~~~VItvPa~F~ 161 (450)
T PRK11678 82 TAQSVFFGLAALAQYLEDPEEVYFVKSPKSFLGASGLKPQQVALFEDLVCAMMLHIKQQAEAQLQAAITQAVIGRPVNFQ 161 (450)
T ss_pred cccccchhHHHHHhhccCCCCceEEecchhhhccCCCCccceeCHHHHHHHHHHHHHHHHHHHhCCCCCcEEEEECCccc
Confidence 336789999999999999988 67999999965333110 0000000000 0001123445554 332
Q ss_pred ------Ccccc---cccccccccccccCCCCCCCC----------cceEEEEEEEecCCcEEEEeeeccccc------cc
Q 021272 113 ------GERAR---TRDNNLLGKFELSGIPPAPRG----------VPQITVCFDIDANGILNVSAEDKTTGQ------KN 167 (315)
Q Consensus 113 ------Ge~~~---~~~n~~Lg~~~l~~i~~~~~g----------~~~i~v~f~~d~nGil~V~a~~~~t~~------~~ 167 (315)
.++.. +.+...++.|++..+-+.|.. ..+.-+.|.+ --|++.++......+. ..
T Consensus 162 ~~~~~~~qr~a~~~l~~Aa~~AG~~~v~li~EPtAAAl~y~~~~~~~~~vlV~D~-GGGT~D~Svv~~~~~~~~~~~r~~ 240 (450)
T PRK11678 162 GLGGEEANRQAEGILERAAKRAGFKDVEFQFEPVAAGLDFEATLTEEKRVLVVDI-GGGTTDCSMLLMGPSWRGRADRSA 240 (450)
T ss_pred cCCcchhHHHHHHHHHHHHHHcCCCEEEEEcCHHHHHHHhccccCCCCeEEEEEe-CCCeEEEEEEEecCcccccCCcce
Confidence 23322 356667777776555555522 1233344444 2577777766543221 11
Q ss_pred ceEEecCCCCCCHHHHHHHHH
Q 021272 168 KITITNDKGRLSKEEIEKMVQ 188 (315)
Q Consensus 168 ~l~i~~~~~~Ls~~ei~~~~~ 188 (315)
.+.-... ..|.+.+++..+.
T Consensus 241 ~vla~~G-~~lGG~DfD~~L~ 260 (450)
T PRK11678 241 SLLGHSG-QRIGGNDLDIALA 260 (450)
T ss_pred eEEecCC-CCCChHHHHHHHH
Confidence 1111222 3599999998874
No 21
>PRK13929 rod-share determining protein MreBH; Provisional
Probab=98.02 E-value=9.4e-06 Score=75.80 Aligned_cols=56 Identities=38% Similarity=0.483 Sum_probs=43.6
Q ss_pred CCEEEEeccccceEEEEEeCCeEEEEEcCCCCcccceEEEecCC-c--eeecHHHHHhHHhCCCcchh
Q 021272 7 GPAIGIDLGTTYSCVGVWQHDRVEIIANDQGNRTTPSYVAFTDT-E--RLIGDAAKNQVAMNPLNTVF 71 (315)
Q Consensus 7 ~~~iGID~GTtns~va~~~~g~~~vi~~~~~~~~~PS~v~~~~~-~--~~vG~~A~~~~~~~~~~~~~ 71 (315)
...+||||||+|++| +.+++.. +.| .||+|+|..+ . ..||..|+.+..++|.++..
T Consensus 4 ~~~~giDlGt~~~~i--~~~~~~~-~~~------~ps~va~~~~~~~~~~vG~~A~~~~~~~p~~~~~ 62 (335)
T PRK13929 4 STEIGIDLGTANILV--YSKNKGI-ILN------EPSVVAVDTETKAVLAIGTEAKNMIGKTPGKIVA 62 (335)
T ss_pred CCeEEEEcccccEEE--EECCCcE-Eec------CCcEEEEECCCCeEEEeCHHHHHhhhcCCCcEEE
Confidence 346999999999985 4555553 444 3999999854 3 57999999999999988765
No 22
>TIGR00904 mreB cell shape determining protein, MreB/Mrl family. A close homolog is found in the Archaeon Methanobacterium thermoautotrophicum, and a more distant homolog in Archaeoglobus fulgidus. The family is related to cell division protein FtsA and heat shock protein DnaK.
Probab=97.85 E-value=2.5e-05 Score=72.84 Aligned_cols=52 Identities=35% Similarity=0.447 Sum_probs=39.9
Q ss_pred EEEEeccccceEEEEEeCCeEEEEEcCCCCcccceEEEecCC-----c--eeecHHHHHhHHhCCCcc
Q 021272 9 AIGIDLGTTYSCVGVWQHDRVEIIANDQGNRTTPSYVAFTDT-----E--RLIGDAAKNQVAMNPLNT 69 (315)
Q Consensus 9 ~iGID~GTtns~va~~~~g~~~vi~~~~~~~~~PS~v~~~~~-----~--~~vG~~A~~~~~~~~~~~ 69 (315)
-+||||||+||+|++...| .++. .||+|+|..+ + ..||..|++.+.+.|.++
T Consensus 4 ~~giDlGt~~s~i~~~~~~--~~~~-------~psvv~~~~~~~~~~~~~~~vG~~A~~~~~~~~~~~ 62 (333)
T TIGR00904 4 DIGIDLGTANTLVYVKGRG--IVLN-------EPSVVAIRTDRDAKTKSILAVGHEAKEMLGKTPGNI 62 (333)
T ss_pred eeEEecCcceEEEEECCCC--EEEe-------cCCEEEEecCCCCCCCeEEEEhHHHHHhhhcCCCCE
Confidence 3999999999999885443 3332 6999999733 3 679999999887766654
No 23
>PRK13928 rod shape-determining protein Mbl; Provisional
Probab=97.75 E-value=3.7e-05 Score=71.78 Aligned_cols=53 Identities=36% Similarity=0.466 Sum_probs=41.8
Q ss_pred EEEEeccccceEEEEEeCCeEEEEEcCCCCcccceEEEecCC--c-eeecHHHHHhHHhCCCcch
Q 021272 9 AIGIDLGTTYSCVGVWQHDRVEIIANDQGNRTTPSYVAFTDT--E-RLIGDAAKNQVAMNPLNTV 70 (315)
Q Consensus 9 ~iGID~GTtns~va~~~~g~~~vi~~~~~~~~~PS~v~~~~~--~-~~vG~~A~~~~~~~~~~~~ 70 (315)
-+||||||+||+|+.. ++..++. .||+|+|... . ..+|..|++.+.+.|.+..
T Consensus 5 ~~gIDlGt~~~~i~~~--~~~~v~~-------~psvv~~~~~~~~i~~vG~~A~~~~~~~p~~~~ 60 (336)
T PRK13928 5 DIGIDLGTANVLVYVK--GKGIVLN-------EPSVVAIDKNTNKVLAVGEEARRMVGRTPGNIV 60 (336)
T ss_pred eeEEEcccccEEEEEC--CCCEEEc-------cCCEEEEECCCCeEEEecHHHHHhhhcCCCCEE
Confidence 3899999999999886 4445665 4999999854 2 4699999999877777654
No 24
>PRK13930 rod shape-determining protein MreB; Provisional
Probab=97.54 E-value=0.00014 Score=67.72 Aligned_cols=54 Identities=33% Similarity=0.425 Sum_probs=40.8
Q ss_pred CCEEEEeccccceEEEEEeCCeEEEEEcCCCCcccceEEEecCC---ceeecHHHHHhHHhCCCcc
Q 021272 7 GPAIGIDLGTTYSCVGVWQHDRVEIIANDQGNRTTPSYVAFTDT---ERLIGDAAKNQVAMNPLNT 69 (315)
Q Consensus 7 ~~~iGID~GTtns~va~~~~g~~~vi~~~~~~~~~PS~v~~~~~---~~~vG~~A~~~~~~~~~~~ 69 (315)
+..+||||||+|++|+++..+ .++. +||+|+|... ..+||..|++...+.|.+.
T Consensus 8 ~~~vgiDlGt~~t~i~~~~~~--~~~~-------~ps~v~~~~~~~~~~~vG~~A~~~~~~~~~~~ 64 (335)
T PRK13930 8 SKDIGIDLGTANTLVYVKGKG--IVLN-------EPSVVAIDTKTGKVLAVGEEAKEMLGRTPGNI 64 (335)
T ss_pred ccceEEEcCCCcEEEEECCCC--EEEe-------cCCEEEEECCCCeEEEEcHHHHHhhhcCCCCe
Confidence 456999999999999887433 2332 5999999742 4689999999887666543
No 25
>PRK13927 rod shape-determining protein MreB; Provisional
Probab=97.41 E-value=0.0003 Score=65.58 Aligned_cols=54 Identities=31% Similarity=0.411 Sum_probs=40.2
Q ss_pred CCEEEEeccccceEEEEEeCCeEEEEEcCCCCcccceEEEecCC---ceeecHHHHHhHHhCCCcc
Q 021272 7 GPAIGIDLGTTYSCVGVWQHDRVEIIANDQGNRTTPSYVAFTDT---ERLIGDAAKNQVAMNPLNT 69 (315)
Q Consensus 7 ~~~iGID~GTtns~va~~~~g~~~vi~~~~~~~~~PS~v~~~~~---~~~vG~~A~~~~~~~~~~~ 69 (315)
+..|||||||+|++|+.. |...++. +||+|+|... ..+||..|+.+..+.|.++
T Consensus 5 ~~~igIDlGt~~~~i~~~--~~~~~~~-------~ps~v~~~~~~~~~~~vG~~a~~~~~~~~~~~ 61 (334)
T PRK13927 5 SNDLGIDLGTANTLVYVK--GKGIVLN-------EPSVVAIRTDTKKVLAVGEEAKQMLGRTPGNI 61 (334)
T ss_pred cceeEEEcCcceEEEEEC--CCcEEEe-------cCCEEEEECCCCeEEEecHHHHHHhhcCCCCE
Confidence 457999999999998543 3322332 7999999754 2489999999987777654
No 26
>COG1077 MreB Actin-like ATPase involved in cell morphogenesis [Cell division and chromosome partitioning]
Probab=97.39 E-value=0.00025 Score=64.46 Aligned_cols=54 Identities=37% Similarity=0.483 Sum_probs=42.4
Q ss_pred CCEEEEeccccceEEEEEeCCeEEEEEcCCCCcccceEEEecC--C---ceeecHHHHHhHHhCCCcc
Q 021272 7 GPAIGIDLGTTYSCVGVWQHDRVEIIANDQGNRTTPSYVAFTD--T---ERLIGDAAKNQVAMNPLNT 69 (315)
Q Consensus 7 ~~~iGID~GTtns~va~~~~g~~~vi~~~~~~~~~PS~v~~~~--~---~~~vG~~A~~~~~~~~~~~ 69 (315)
+..+||||||.|+.|.+-..| +++++ ||+|++.. + -..||..|+.+.-+.|.+.
T Consensus 6 s~diGIDLGTanTlV~~k~kg---IVl~e------PSVVAi~~~~~~~~v~aVG~eAK~MlGrTP~ni 64 (342)
T COG1077 6 SNDIGIDLGTANTLVYVKGKG---IVLNE------PSVVAIESEGKTKVVLAVGEEAKQMLGRTPGNI 64 (342)
T ss_pred cccceeeecccceEEEEcCce---EEecC------ceEEEEeecCCCceEEEehHHHHHHhccCCCCc
Confidence 458999999999998876333 55554 99999986 3 2348999999998888764
No 27
>PF06723 MreB_Mbl: MreB/Mbl protein; InterPro: IPR004753 Bacterial cell shape varies greatly between species, and characteristic morphologies are used for identification purposes. In addition to individual cell shape, the way in which groups of cells are arranged is also typical of some bacterial species, especially Gram-positive coccoids. For many years, it was believed that micro-organisms with other than spheroidal cell shapes maintained morphology by means of their external cell walls. Recently, however, studies of the Gram-positive rod Bacillus subtilis have revealed two related genes that are essential for the integrity of cell morphogenesis []. Termed mreB and mbl, the gene products localise close to the cell surface, forming filamentous helical structures. Many homologues have been found in diverse bacterial groups, suggesting a common ancestor []. The crystal structure of MreB from Thermotoga maritima has been resolved using X-ray crystallography []. It consists of 19 beta-strands and 15 alpha- helices, and shows remarkable structural similarity to eukaryotic actin. MreB crystals also contain proto-filaments, with individual proteins assembling into polymers like F-actin, in the same orientation. It is hypothesised therefore, that MreB was the forerunner of actin in early eukaryotes [].; GO: 0000902 cell morphogenesis; PDB: 1JCF_A 1JCE_A 2WUS_A 1JCG_A.
Probab=97.26 E-value=0.00018 Score=66.74 Aligned_cols=52 Identities=38% Similarity=0.536 Sum_probs=36.0
Q ss_pred CEEEEeccccceEEEEEeCCeEEEEEcCCCCcccceEEEecCC---ceeecHHHHHhHHhCCCc
Q 021272 8 PAIGIDLGTTYSCVGVWQHDRVEIIANDQGNRTTPSYVAFTDT---ERLIGDAAKNQVAMNPLN 68 (315)
Q Consensus 8 ~~iGID~GTtns~va~~~~g~~~vi~~~~~~~~~PS~v~~~~~---~~~vG~~A~~~~~~~~~~ 68 (315)
.-+||||||+|+.|+.-..| ++.++ ||+|+++.+ -..+|..|+.+..+.|.+
T Consensus 2 ~~igIDLGT~~t~i~~~~~G---iv~~e------pSvVA~~~~~~~i~avG~~A~~m~gktp~~ 56 (326)
T PF06723_consen 2 KDIGIDLGTSNTRIYVKGKG---IVLNE------PSVVAYDKDTGKILAVGDEAKAMLGKTPDN 56 (326)
T ss_dssp SEEEEEE-SSEEEEEETTTE---EEEEE------ES-EEEETTT--EEEESHHHHTTTTS-GTT
T ss_pred CceEEecCcccEEEEECCCC---EEEec------CcEEEEECCCCeEEEEhHHHHHHhhcCCCc
Confidence 46999999999998553333 33333 999999865 234899999988877765
No 28
>PF00370 FGGY_N: FGGY family of carbohydrate kinases, N-terminal domain; InterPro: IPR018484 It has been shown [] that four different type of carbohydrate kinases seem to be evolutionary related. These enzymes include L-fucolokinase (2.7.1.51 from EC) (gene fucK); gluconokinase (2.7.1.12 from EC) (gene gntK); glycerol kinase (2.7.1.30 from EC) (gene glpK); xylulokinase (2.7.1.17 from EC) (gene xylB); and L-xylulose kinase (2.7.1.53 from EC) (gene lyxK). These enzymes are proteins of from 480 to 520 amino acid residues. This entry represents the N-terminal domain of these proteins. It adopts a ribonuclease H-like fold and is structurally related to the C-terminal domain [, ].; GO: 0016773 phosphotransferase activity, alcohol group as acceptor, 0005975 carbohydrate metabolic process; PDB: 3G25_D 3GE1_D 2NLX_A 2ITM_A 2ZF5_Y 3L0Q_B 3GG4_B 3I8B_A 3H3O_C 3FLC_X ....
Probab=88.38 E-value=0.43 Score=42.22 Aligned_cols=18 Identities=33% Similarity=0.457 Sum_probs=16.5
Q ss_pred CEEEEeccccceEEEEEe
Q 021272 8 PAIGIDLGTTYSCVGVWQ 25 (315)
Q Consensus 8 ~~iGID~GTtns~va~~~ 25 (315)
+++|||+|||++++++++
T Consensus 1 y~lgiDiGTts~K~~l~d 18 (245)
T PF00370_consen 1 YYLGIDIGTTSVKAVLFD 18 (245)
T ss_dssp EEEEEEECSSEEEEEEEE
T ss_pred CEEEEEEcccceEEEEEe
Confidence 379999999999999996
No 29
>smart00268 ACTIN Actin. ACTIN subfamily of ACTIN/mreB/sugarkinase/Hsp70 superfamily
Probab=85.70 E-value=0.94 Score=42.70 Aligned_cols=45 Identities=31% Similarity=0.465 Sum_probs=32.8
Q ss_pred CEEEEeccccceEEEEEeCCeEEEEEcCCCCcccceEEEecCC---------ceeecHHHHH
Q 021272 8 PAIGIDLGTTYSCVGVWQHDRVEIIANDQGNRTTPSYVAFTDT---------ERLIGDAAKN 60 (315)
Q Consensus 8 ~~iGID~GTtns~va~~~~g~~~vi~~~~~~~~~PS~v~~~~~---------~~~vG~~A~~ 60 (315)
.+|.||+||.++.+++..+..|.++ +||+|+...+ ..++|..|..
T Consensus 2 ~~iviD~Gs~~~k~G~~~~~~P~~~--------~ps~v~~~~~~~~~~~~~~~~~~G~~a~~ 55 (373)
T smart00268 2 PAIVIDNGSGTIKAGFAGEDEPQVV--------FPSIVGRPKDGKGMVGDAKDTFVGDEAQE 55 (373)
T ss_pred CeEEEECCCCcEEEeeCCCCCCcEE--------ccceeeEecccccccCCCcceEecchhhh
Confidence 4799999999999988766555544 3888877533 2478998854
No 30
>PRK10331 L-fuculokinase; Provisional
Probab=85.60 E-value=0.7 Score=45.20 Aligned_cols=22 Identities=14% Similarity=0.095 Sum_probs=18.4
Q ss_pred CCEEEEeccccceEEEEEe-CCe
Q 021272 7 GPAIGIDLGTTYSCVGVWQ-HDR 28 (315)
Q Consensus 7 ~~~iGID~GTtns~va~~~-~g~ 28 (315)
..++|||+|||+++++++. +|+
T Consensus 2 ~~~lgID~GTt~~Ka~l~d~~G~ 24 (470)
T PRK10331 2 DVILVLDCGATNVRAIAVDRQGK 24 (470)
T ss_pred ceEEEEecCCCceEEEEEcCCCc
Confidence 3689999999999999995 453
No 31
>PRK10939 autoinducer-2 (AI-2) kinase; Provisional
Probab=85.03 E-value=0.76 Score=45.57 Aligned_cols=19 Identities=16% Similarity=0.211 Sum_probs=17.4
Q ss_pred CCEEEEeccccceEEEEEe
Q 021272 7 GPAIGIDLGTTYSCVGVWQ 25 (315)
Q Consensus 7 ~~~iGID~GTtns~va~~~ 25 (315)
..++|||+|||+++++++.
T Consensus 3 ~~~lgID~GTts~Ka~l~d 21 (520)
T PRK10939 3 SYLMALDAGTGSIRAVIFD 21 (520)
T ss_pred cEEEEEecCCCceEEEEEC
Confidence 4799999999999999995
No 32
>COG1070 XylB Sugar (pentulose and hexulose) kinases [Carbohydrate transport and metabolism]
Probab=85.01 E-value=1 Score=44.55 Aligned_cols=22 Identities=32% Similarity=0.439 Sum_probs=19.3
Q ss_pred CCCEEEEeccccceEEEEEeCC
Q 021272 6 EGPAIGIDLGTTYSCVGVWQHD 27 (315)
Q Consensus 6 ~~~~iGID~GTtns~va~~~~g 27 (315)
+..++|||+|||++++.+++..
T Consensus 3 ~~~~lgIDiGTt~~Kavl~d~~ 24 (502)
T COG1070 3 MKYVLGIDIGTTSVKAVLFDED 24 (502)
T ss_pred ccEEEEEEcCCCcEEEEEEeCC
Confidence 6789999999999999999644
No 33
>TIGR00241 CoA_E_activ CoA-substrate-specific enzyme activase, putative. This domain may be involved in generating or regenerating the active sites of enzymes related to (R)-2-hydroxyglutaryl-CoA dehydratase and benzoyl-CoA reductase.
Probab=84.78 E-value=0.88 Score=40.49 Aligned_cols=19 Identities=26% Similarity=0.454 Sum_probs=17.0
Q ss_pred EEEEeccccceEEEEEeCC
Q 021272 9 AIGIDLGTTYSCVGVWQHD 27 (315)
Q Consensus 9 ~iGID~GTtns~va~~~~g 27 (315)
++|||+|||+++++++.+|
T Consensus 2 ~lGIDiGtts~K~vl~d~g 20 (248)
T TIGR00241 2 SLGIDSGSTTTKMVLMEDG 20 (248)
T ss_pred EEEEEcChhheEEEEEcCC
Confidence 7899999999999999744
No 34
>cd00012 ACTIN Actin; An ubiquitous protein involved in the formation of filaments that are a major component of the cytoskeleton. Interaction with myosin provides the basis of muscular contraction and many aspects of cell motility. Each actin protomer binds one molecule of ATP and either calcium or magnesium ions. Actin exists as a monomer in low salt concentrations, but filaments form rapidly as salt concentration rises, with the consequent hydrolysis of ATP. Polymerization is regulated by so-called capping proteins. The ATPase domain of actin shares similarity with ATPase domains of hexokinase and hsp70 proteins.
Probab=84.13 E-value=0.87 Score=42.94 Aligned_cols=45 Identities=27% Similarity=0.376 Sum_probs=31.2
Q ss_pred EEEEeccccceEEEEEeCCeEEEEEcCCCCcccceEEEec----------CCceeecHHHHHh
Q 021272 9 AIGIDLGTTYSCVGVWQHDRVEIIANDQGNRTTPSYVAFT----------DTERLIGDAAKNQ 61 (315)
Q Consensus 9 ~iGID~GTtns~va~~~~g~~~vi~~~~~~~~~PS~v~~~----------~~~~~vG~~A~~~ 61 (315)
.|.||+||.++.+++..+..|.++ +||+|+.. ....++|..|...
T Consensus 1 ~iViD~Gs~~~r~G~a~~~~p~~~--------~ps~v~~~~~~~~~~~~~~~~~~~G~~a~~~ 55 (371)
T cd00012 1 AVVIDNGSGTIKAGFAGEDAPRVV--------FPSCVGRPKHQSVMVGAGDKDYFVGEEALEK 55 (371)
T ss_pred CEEEECCCCeEEEEeCCCCCCceE--------eeccceeecCcccccccCCCceEEchhhhhC
Confidence 378999999999998866645333 25665543 1367789988764
No 35
>PF14450 FtsA: Cell division protein FtsA; PDB: 1E4F_T 4A2B_A 4A2A_A 1E4G_T.
Probab=82.94 E-value=2.3 Score=33.30 Aligned_cols=21 Identities=19% Similarity=0.306 Sum_probs=17.7
Q ss_pred EEEEeccccceEEEEEeCCeE
Q 021272 9 AIGIDLGTTYSCVGVWQHDRV 29 (315)
Q Consensus 9 ~iGID~GTtns~va~~~~g~~ 29 (315)
+++||+||+.++++++..+..
T Consensus 1 i~~iDiGs~~~~~~i~~~~~~ 21 (120)
T PF14450_consen 1 IVVIDIGSSKTKVAIAEDGSD 21 (120)
T ss_dssp EEEEEE-SSSEEEEEEETTEE
T ss_pred CEEEEcCCCcEEEEEEEeCCC
Confidence 689999999999999988765
No 36
>PTZ00294 glycerol kinase-like protein; Provisional
Probab=82.24 E-value=1.2 Score=44.04 Aligned_cols=19 Identities=26% Similarity=0.207 Sum_probs=17.1
Q ss_pred CEEEEeccccceEEEEEeC
Q 021272 8 PAIGIDLGTTYSCVGVWQH 26 (315)
Q Consensus 8 ~~iGID~GTtns~va~~~~ 26 (315)
.++|||+|||+++++++..
T Consensus 3 ~~lgiDiGTts~Ka~l~d~ 21 (504)
T PTZ00294 3 YIGSIDQGTTSTRFIIFDE 21 (504)
T ss_pred EEEEEecCCCceEEEEECC
Confidence 6899999999999999953
No 37
>PRK15027 xylulokinase; Provisional
Probab=81.78 E-value=1.2 Score=43.78 Aligned_cols=18 Identities=44% Similarity=0.464 Sum_probs=16.3
Q ss_pred EEEEeccccceEEEEEeC
Q 021272 9 AIGIDLGTTYSCVGVWQH 26 (315)
Q Consensus 9 ~iGID~GTtns~va~~~~ 26 (315)
++|||+|||+++++++..
T Consensus 2 ~lgID~GTts~Ka~l~d~ 19 (484)
T PRK15027 2 YIGIDLGTSGVKVILLNE 19 (484)
T ss_pred EEEEEecccceEEEEEcC
Confidence 799999999999999953
No 38
>smart00732 YqgFc Likely ribonuclease with RNase H fold. YqgF proteins are likely to function as an alternative to RuvC in most bacteria, and could be the principal holliday junction resolvases in low-GC Gram-positive bacteria. In Spt6p orthologues, the catalytic residues are substituted indicating that they lack enzymatic functions.
Probab=81.59 E-value=1.5 Score=32.61 Aligned_cols=18 Identities=28% Similarity=0.337 Sum_probs=16.2
Q ss_pred CEEEEeccccceEEEEEe
Q 021272 8 PAIGIDLGTTYSCVGVWQ 25 (315)
Q Consensus 8 ~~iGID~GTtns~va~~~ 25 (315)
.++|||+|.|++.+|++.
T Consensus 2 ~ilgiD~Ggt~i~~a~~d 19 (99)
T smart00732 2 RVLGLDPGRKGIGVAVVD 19 (99)
T ss_pred cEEEEccCCCeEEEEEEC
Confidence 389999999999999984
No 39
>PRK04123 ribulokinase; Provisional
Probab=81.26 E-value=1.5 Score=43.78 Aligned_cols=19 Identities=26% Similarity=0.307 Sum_probs=17.5
Q ss_pred CCEEEEeccccceEEEEEe
Q 021272 7 GPAIGIDLGTTYSCVGVWQ 25 (315)
Q Consensus 7 ~~~iGID~GTtns~va~~~ 25 (315)
..++|||+|||+++++++.
T Consensus 3 ~~~lgiD~GTts~Ka~l~d 21 (548)
T PRK04123 3 AYVIGLDFGTDSVRALLVD 21 (548)
T ss_pred cEEEEEecCCCceEEEEEE
Confidence 4689999999999999997
No 40
>TIGR01234 L-ribulokinase L-ribulokinase. This enzyme catalyzes the second step in arabinose catabolism. The most closely related protein subfamily outside the scope of this model includes ribitol kinase from E. coli.
Probab=81.08 E-value=1.5 Score=43.71 Aligned_cols=18 Identities=33% Similarity=0.333 Sum_probs=17.0
Q ss_pred CEEEEeccccceEEEEEe
Q 021272 8 PAIGIDLGTTYSCVGVWQ 25 (315)
Q Consensus 8 ~~iGID~GTtns~va~~~ 25 (315)
.++|||+|||+++++++.
T Consensus 2 ~~lgiD~GTss~Ka~l~d 19 (536)
T TIGR01234 2 YAIGVDFGTLSGRALAVD 19 (536)
T ss_pred eEEEEecCCCceEEEEEE
Confidence 589999999999999998
No 41
>TIGR02628 fuculo_kin_coli L-fuculokinase. Members of this family are L-fuculokinase, from the clade that includes the L-fuculokinase of Escherichia coli. This enzyme catalyzes the second step in fucose catabolism. This family belongs to FGGY family of carbohydrate kinases (pfam02782, pfam00370). It is encoded by the kinase (K) gene of the fucose (fuc) operon.
Probab=80.98 E-value=1.4 Score=43.13 Aligned_cols=19 Identities=16% Similarity=0.039 Sum_probs=16.9
Q ss_pred CEEEEeccccceEEEEEeC
Q 021272 8 PAIGIDLGTTYSCVGVWQH 26 (315)
Q Consensus 8 ~~iGID~GTtns~va~~~~ 26 (315)
.++|||+|||++++++++.
T Consensus 2 ~ilgiD~GTss~K~~l~d~ 20 (465)
T TIGR02628 2 VILVLDCGATNLRAIAINR 20 (465)
T ss_pred eEEEEecCCCcEEEEEEcC
Confidence 4799999999999999953
No 42
>PLN00130 succinate dehydrogenase (SDH3); Provisional
Probab=80.96 E-value=0.2 Score=41.78 Aligned_cols=22 Identities=18% Similarity=0.293 Sum_probs=18.4
Q ss_pred CCEEEEeccccceEEEEEeCCe
Q 021272 7 GPAIGIDLGTTYSCVGVWQHDR 28 (315)
Q Consensus 7 ~~~iGID~GTtns~va~~~~g~ 28 (315)
.-++|+|+||+|+|++...+.+
T Consensus 57 ~d~~g~~~gt~n~~~~~~e~~k 78 (213)
T PLN00130 57 NDILGTGLGTNNAIREEREKSK 78 (213)
T ss_pred cceeccCCCcchHHHHHHhccc
Confidence 4689999999999999877543
No 43
>PRK00047 glpK glycerol kinase; Provisional
Probab=80.12 E-value=1.7 Score=42.88 Aligned_cols=19 Identities=26% Similarity=0.302 Sum_probs=17.1
Q ss_pred CCEEEEeccccceEEEEEe
Q 021272 7 GPAIGIDLGTTYSCVGVWQ 25 (315)
Q Consensus 7 ~~~iGID~GTtns~va~~~ 25 (315)
..++|||+|||+++++++.
T Consensus 5 ~~~lgiD~GTts~Ka~l~d 23 (498)
T PRK00047 5 KYILALDQGTTSSRAIIFD 23 (498)
T ss_pred CEEEEEecCCCceEEEEEC
Confidence 4689999999999999994
No 44
>PTZ00280 Actin-related protein 3; Provisional
Probab=79.82 E-value=2.9 Score=40.22 Aligned_cols=47 Identities=30% Similarity=0.374 Sum_probs=32.7
Q ss_pred CCEEEEeccccceEEEEEeCCeEEEEEcCCCCcccceEEEecC-------------CceeecHHHHHh
Q 021272 7 GPAIGIDLGTTYSCVGVWQHDRVEIIANDQGNRTTPSYVAFTD-------------TERLIGDAAKNQ 61 (315)
Q Consensus 7 ~~~iGID~GTtns~va~~~~g~~~vi~~~~~~~~~PS~v~~~~-------------~~~~vG~~A~~~ 61 (315)
..+|.||+||.++.+++.....|.++ +||+|+... ...++|..|...
T Consensus 4 ~~~iViD~GS~~~k~G~ag~~~P~~~--------~ps~v~~~~~~~~~~~~~~~~~~~~~vG~ea~~~ 63 (414)
T PTZ00280 4 LPVVVIDNGTGYTKMGYAGNTEPTYI--------IPTLIADNSKQSRRRSKKGFEDLDFYIGDEALAA 63 (414)
T ss_pred CCeEEEECCCCceEeeeCCCCCCCEE--------ecceeEEeccccccccccccccCCEEEcchhhhC
Confidence 44899999999999999865566543 366665421 145789887653
No 45
>PLN02295 glycerol kinase
Probab=78.73 E-value=1.8 Score=42.89 Aligned_cols=18 Identities=28% Similarity=0.226 Sum_probs=16.3
Q ss_pred CEEEEeccccceEEEEEe
Q 021272 8 PAIGIDLGTTYSCVGVWQ 25 (315)
Q Consensus 8 ~~iGID~GTtns~va~~~ 25 (315)
.++|||+|||+++++++.
T Consensus 1 ~vlgID~GTts~Ka~l~d 18 (512)
T PLN02295 1 FVGAIDQGTTSTRFIIYD 18 (512)
T ss_pred CEEEEecCCCceEEEEEC
Confidence 479999999999999995
No 46
>TIGR01314 gntK_FGGY gluconate kinase, FGGY type. Gluconate is derived from glucose in two steps. This model describes one form of gluconate kinase, belonging to the FGGY family of carbohydrate kinases. Gluconate kinase phosphoryates gluconate for entry into the Entner-Douderoff pathway.
Probab=78.70 E-value=1.8 Score=42.73 Aligned_cols=18 Identities=33% Similarity=0.551 Sum_probs=16.3
Q ss_pred CEEEEeccccceEEEEEe
Q 021272 8 PAIGIDLGTTYSCVGVWQ 25 (315)
Q Consensus 8 ~~iGID~GTtns~va~~~ 25 (315)
.++|||+|||+++++++.
T Consensus 1 ~~lgiDiGtt~~K~~l~d 18 (505)
T TIGR01314 1 YMIGVDIGTTSTKAVLFE 18 (505)
T ss_pred CEEEEeccccceEEEEEc
Confidence 379999999999999994
No 47
>TIGR01315 5C_CHO_kinase FGGY-family pentulose kinase. This model represents a subfamily of the FGGY family of carbohydrate kinases. This subfamily is closely related to a set of ribulose kinases, and many members are designated ribitol kinase. However, the member from Klebsiella pneumoniae, from a ribitol catabolism operon, accepts D-ribulose and to a lesser extent D-arabinitol and ribitol (PubMed:9639934 and JW Lengeler, personal communication); its annotation in GenBank as ribitol kinase is imprecise and may have affected public annotation of related proteins.
Probab=76.24 E-value=2.4 Score=42.30 Aligned_cols=21 Identities=24% Similarity=0.346 Sum_probs=17.5
Q ss_pred CEEEEeccccceEEEEEe-CCe
Q 021272 8 PAIGIDLGTTYSCVGVWQ-HDR 28 (315)
Q Consensus 8 ~~iGID~GTtns~va~~~-~g~ 28 (315)
.++|||+|||+++++++. +|+
T Consensus 1 ~~lgID~GTts~Ka~l~d~~G~ 22 (541)
T TIGR01315 1 HYIGVDVGTGSARACIIDSTGD 22 (541)
T ss_pred CEEEEEecCcCEEEEEEcCCCC
Confidence 378999999999999994 443
No 48
>TIGR01311 glycerol_kin glycerol kinase. This model describes glycerol kinase, a member of the FGGY family of carbohydrate kinases.
Probab=75.96 E-value=2.4 Score=41.70 Aligned_cols=18 Identities=39% Similarity=0.366 Sum_probs=16.5
Q ss_pred CEEEEeccccceEEEEEe
Q 021272 8 PAIGIDLGTTYSCVGVWQ 25 (315)
Q Consensus 8 ~~iGID~GTtns~va~~~ 25 (315)
.++|||+|||+++++++.
T Consensus 2 ~~lgiDiGtt~iKa~l~d 19 (493)
T TIGR01311 2 YILAIDQGTTSSRAIVFD 19 (493)
T ss_pred eEEEEecCCCceEEEEEC
Confidence 589999999999999994
No 49
>cd00529 RuvC_resolvase Holliday junction resolvases (HJRs) are endonucleases that specifically resolve Holliday junction DNA intermediates during homologous recombination. HJR's occur in archaea, bacteria, and in the mitochondria of certain fungi, however this CD includes only the bacterial and mitochondrial HJR's. These are referred to as the RuvC family of Holliday junction resolvases, RuvC being the E.coli HJR. RuvC and its orthologs are homodimers and are structurely similar to RNase H and Hsp70.
Probab=75.11 E-value=4.5 Score=33.25 Aligned_cols=25 Identities=24% Similarity=0.416 Sum_probs=19.0
Q ss_pred CEEEEeccccceEEEEEe--CCeEEEE
Q 021272 8 PAIGIDLGTTYSCVGVWQ--HDRVEII 32 (315)
Q Consensus 8 ~~iGID~GTtns~va~~~--~g~~~vi 32 (315)
.++|||.|++|+-.|++. ++.+.++
T Consensus 1 rILGIDPGl~~~G~av~~~~~~~~~~~ 27 (154)
T cd00529 1 RILGIDPGSRNTGYGVIEQEGRKLIYL 27 (154)
T ss_pred CEEEEccCcCceEEEEEEeeCCeEEEE
Confidence 389999999999999874 4444444
No 50
>TIGR02259 benz_CoA_red_A benzoyl-CoA reductase, bcr type, subunit A. This model describes A, or gamma, subunit of the bcr type of benzoyl-CoA reductase, a 4-subunit enzyme. Many aromatic compounds are metabolized by way of benzoyl-CoA. This family shows strong sequence similarity to the 2-hydroxyglutaryl-CoA dehydratase alpha chain and to subunits of different types of benzoyl-CoA reductase (such as the bzd type).
Probab=74.09 E-value=2.8 Score=39.96 Aligned_cols=22 Identities=27% Similarity=0.335 Sum_probs=19.2
Q ss_pred CCEEEEeccccceEEEEEeCCe
Q 021272 7 GPAIGIDLGTTYSCVGVWQHDR 28 (315)
Q Consensus 7 ~~~iGID~GTtns~va~~~~g~ 28 (315)
.+++|||.|+|.+++.++..+.
T Consensus 2 ~y~lGIDIGSTsTKaVVmd~~g 23 (432)
T TIGR02259 2 ECFVGIDLGSTTTKAVLMDDKG 23 (432)
T ss_pred ceEEEEEcCchhEEEEEEcCCC
Confidence 4789999999999999998664
No 51
>TIGR03192 benz_CoA_bzdQ benzoyl-CoA reductase, bzd-type, Q subunit. Members of this family are the Q subunit of one of two related types of four-subunit ATP-dependent benzoyl-CoA reductase. This enzyme system catalyzes the dearomatization of benzoyl-CoA, a common intermediate in pathways for the degradation for a number of different aromatic compounds, such as phenol and toluene.
Probab=73.58 E-value=3.5 Score=37.68 Aligned_cols=20 Identities=25% Similarity=0.237 Sum_probs=17.9
Q ss_pred CEEEEeccccceEEEEEeCC
Q 021272 8 PAIGIDLGTTYSCVGVWQHD 27 (315)
Q Consensus 8 ~~iGID~GTtns~va~~~~g 27 (315)
.++|||.|+|.+++++++++
T Consensus 33 ~~~GIDiGStt~K~Vlld~~ 52 (293)
T TIGR03192 33 ITCGIDVGSVSSQAVLVCDG 52 (293)
T ss_pred EEEEEEeCchhEEEEEEeCC
Confidence 57999999999999998865
No 52
>PTZ00452 actin; Provisional
Probab=73.02 E-value=6 Score=37.52 Aligned_cols=48 Identities=27% Similarity=0.418 Sum_probs=33.2
Q ss_pred CCCCEEEEeccccceEEEEEeCCeEEEEEcCCCCcccceEEEecC----------CceeecHHHHH
Q 021272 5 GEGPAIGIDLGTTYSCVGVWQHDRVEIIANDQGNRTTPSYVAFTD----------TERLIGDAAKN 60 (315)
Q Consensus 5 ~~~~~iGID~GTtns~va~~~~g~~~vi~~~~~~~~~PS~v~~~~----------~~~~vG~~A~~ 60 (315)
.+...|-||+|+.++++++.....|.++- ||+|.... ...++|..|..
T Consensus 3 ~~~~~vViD~Gs~~~k~G~age~~P~~i~--------ps~vg~~~~~~~~~~~~~~~~~iG~~~~~ 60 (375)
T PTZ00452 3 AQYPAVVIDNGSGYCKIGIAGDDAPTSCF--------PAIVGRSKQNDGIFSTFNKEYYVGEEAQA 60 (375)
T ss_pred CCCCEEEEECCCCeEEEeeCCCCCcCEEe--------cceeEEECCccccccccccceEEChhhhc
Confidence 35568999999999999998777775433 55554422 24578888753
No 53
>COG4820 EutJ Ethanolamine utilization protein, possible chaperonin [Amino acid transport and metabolism]
Probab=72.41 E-value=4.1 Score=35.12 Aligned_cols=23 Identities=26% Similarity=0.297 Sum_probs=17.6
Q ss_pred CCCEEEEeccccceEEEEE-eCCe
Q 021272 6 EGPAIGIDLGTTYSCVGVW-QHDR 28 (315)
Q Consensus 6 ~~~~iGID~GTtns~va~~-~~g~ 28 (315)
+...+|+||||++.+..+. ++|+
T Consensus 28 sk~~vGVDLGT~~iV~~vlD~d~~ 51 (277)
T COG4820 28 SKLWVGVDLGTCDIVSMVLDRDGQ 51 (277)
T ss_pred CceEEEeecccceEEEEEEcCCCC
Confidence 4678999999999887766 3443
No 54
>PRK13317 pantothenate kinase; Provisional
Probab=71.62 E-value=5.7 Score=36.09 Aligned_cols=23 Identities=26% Similarity=0.335 Sum_probs=19.1
Q ss_pred CCEEEEeccccceEEEEEeCCeE
Q 021272 7 GPAIGIDLGTTYSCVGVWQHDRV 29 (315)
Q Consensus 7 ~~~iGID~GTtns~va~~~~g~~ 29 (315)
...+|||.|+|.++++++.++..
T Consensus 2 ~~~iGIDiGstt~K~v~~~~~~~ 24 (277)
T PRK13317 2 EMKIGIDAGGTLTKIVYLEEKKQ 24 (277)
T ss_pred CceEEEEeCcccEEEEEEcCCCe
Confidence 46899999999999999866543
No 55
>TIGR03286 methan_mark_15 putative methanogenesis marker protein 15. Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The exact function is unknown, but likely is linked to methanogenesis or a process closely connected to it. Related proteins include the BadF/BadG/BcrA/BcrD ATPase family (pfam01869), which includes an activator for (R)-2-hydroxyglutaryl-CoA dehydratase.
Probab=71.29 E-value=3.9 Score=39.05 Aligned_cols=23 Identities=35% Similarity=0.500 Sum_probs=19.9
Q ss_pred CCCCEEEEeccccceEEEEEeCC
Q 021272 5 GEGPAIGIDLGTTYSCVGVWQHD 27 (315)
Q Consensus 5 ~~~~~iGID~GTtns~va~~~~g 27 (315)
+...++|||.|+|.+++++++++
T Consensus 142 ~~g~~lGIDiGSTttK~Vl~dd~ 164 (404)
T TIGR03286 142 QEGLTLGIDSGSTTTKAVVMEDN 164 (404)
T ss_pred cCCEEEEEEcChhheeeEEEcCC
Confidence 45679999999999999998765
No 56
>smart00842 FtsA Cell division protein FtsA. FtsA is essential for bacterial cell division, and co-localizes to the septal ring with FtsZ. It has been suggested that the interaction of FtsA-FtsZ has arisen through coevolution in different bacterial strains PUBMED:9352931.
Probab=70.37 E-value=4.8 Score=34.02 Aligned_cols=64 Identities=20% Similarity=0.329 Sum_probs=36.3
Q ss_pred EEEEeccccceEEEEEe---CCeEEEEEcCCCCcccceEEEecCCceeecHHHHHhHHhCCCcchhhhhhhhcCCC
Q 021272 9 AIGIDLGTTYSCVGVWQ---HDRVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPLNTVFDAKRLIGRRF 81 (315)
Q Consensus 9 ~iGID~GTtns~va~~~---~g~~~vi~~~~~~~~~PS~v~~~~~~~~vG~~A~~~~~~~~~~~~~~~KrliG~~~ 81 (315)
++|||+||+..++.+.. +|.+.++... ..||- .+.+ +.++-..+.....+ ..+..+.+..|.+.
T Consensus 1 ~~~lDIGs~~ik~vv~~~~~~~~~~i~g~~----~~~s~-gi~~-G~I~d~~~~~~~I~---~ai~~ae~~~~~~i 67 (187)
T smart00842 1 IVGLDIGTSKIKALVAEVDEDGEINVIGVG----EVPSR-GIRK-GVIVDIEAAARAIR---EAVEEAERMAGVKI 67 (187)
T ss_pred CEEEEeccceEEEEEEEEcCCCCEEEEEEE----EecCC-CccC-cEEECHHHHHHHHH---HHHHHHHHHhCCcc
Confidence 47999999999987763 4566766521 22432 2222 45555555444432 34555556566553
No 57
>TIGR02261 benz_CoA_red_D benzoyl-CoA reductase, bcr type, subunit D. This model describes the D subunit of benzoyl-CoA reductase, a 4-subunit enzyme. Many aromatic compounds are metabolized by way of benzoyl-CoA. This family shows sequence similarity to the A subunit (TIGR02259) and to the 2-hydroxyglutaryl-CoA dehydratase alpha chain.
Probab=70.10 E-value=6.1 Score=35.54 Aligned_cols=18 Identities=28% Similarity=0.377 Sum_probs=16.4
Q ss_pred CEEEEeccccceEEEEEe
Q 021272 8 PAIGIDLGTTYSCVGVWQ 25 (315)
Q Consensus 8 ~~iGID~GTtns~va~~~ 25 (315)
.++|||.|+|.++++++.
T Consensus 2 ~~~GIDiGStttK~Vlid 19 (262)
T TIGR02261 2 ITAGIDIGTGAIKTVLFE 19 (262)
T ss_pred eEEEEEcCcccEEEEEEe
Confidence 378999999999999987
No 58
>PLN02669 xylulokinase
Probab=69.89 E-value=4 Score=40.90 Aligned_cols=20 Identities=20% Similarity=0.172 Sum_probs=17.6
Q ss_pred CCCEEEEeccccceEEEEEe
Q 021272 6 EGPAIGIDLGTTYSCVGVWQ 25 (315)
Q Consensus 6 ~~~~iGID~GTtns~va~~~ 25 (315)
...++|||+||+.+++++++
T Consensus 7 ~~~~LGiD~GT~s~Ka~l~d 26 (556)
T PLN02669 7 DSLFLGFDSSTQSLKATVLD 26 (556)
T ss_pred CCeEEEEecccCCeEEEEEc
Confidence 45689999999999999985
No 59
>PLN02362 hexokinase
Probab=68.06 E-value=3.1 Score=41.14 Aligned_cols=84 Identities=23% Similarity=0.151 Sum_probs=47.3
Q ss_pred CCCCEEEEeccccceEEEEEe--CCeEEEEEcCCCCcccceEEEecCCceeecHHHHHhHH---hCC-Ccchh-hhhhhh
Q 021272 5 GEGPAIGIDLGTTYSCVGVWQ--HDRVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVA---MNP-LNTVF-DAKRLI 77 (315)
Q Consensus 5 ~~~~~iGID~GTtns~va~~~--~g~~~vi~~~~~~~~~PS~v~~~~~~~~vG~~A~~~~~---~~~-~~~~~-~~Krli 77 (315)
-.+.+++||||.||..|+.+. ++...++.....+..+|--+.-...+.++..-|..... .+. ...+. .-+.-|
T Consensus 93 E~G~fLAlDlGGTNfRV~~V~L~g~~~~~~~~~~~~~~Ip~~l~~~~~~eLFd~IA~~i~~fl~~~~~~~~~~~~~~l~L 172 (509)
T PLN02362 93 EIGTYYALDLGGTNFRVLRVQLGGQRSSILSQDVERHPIPQHLMNSTSEVLFDFIASSLKQFVEKEENGSEFSQVRRREL 172 (509)
T ss_pred cceeEEEEecCCceEEEEEEEecCCCcceeeceeEEEecChhhccCCHHHHHHHHHHHHHHHHHhcCccccccccccccc
Confidence 356799999999999999884 22222222122345566555544445666666655432 111 10111 134668
Q ss_pred cCCCCChhhhc
Q 021272 78 GRRFSDSSVQG 88 (315)
Q Consensus 78 G~~~~~~~v~~ 88 (315)
|-+|+-|..|.
T Consensus 173 GfTFSFPv~Q~ 183 (509)
T PLN02362 173 GFTFSFPVKQT 183 (509)
T ss_pred eeEEeeeeccC
Confidence 88888775553
No 60
>PF10458 Val_tRNA-synt_C: Valyl tRNA synthetase tRNA binding arm; InterPro: IPR019499 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the C-terminal domain of Valyl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Valyl-tRNA synthetase (6.1.1.9 from EC) is an alpha monomer that belongs to class Ia.; GO: 0000166 nucleotide binding, 0004832 valine-tRNA ligase activity, 0005524 ATP binding, 0006438 valyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 1IVS_B 1GAX_B.
Probab=66.55 E-value=28 Score=24.03 Aligned_cols=42 Identities=12% Similarity=0.177 Sum_probs=29.0
Q ss_pred HHHhHHHHHHHHHhhcccccccccCCHHHHHHHHHHHHHHHH
Q 021272 206 AKNALENYAYNMRNTIKDDQIGSKLSAADKKRIEDTIEEAMQ 247 (315)
Q Consensus 206 ~kn~LEs~iy~~r~~l~~~~~~~~~~~~e~~~l~~~l~e~e~ 247 (315)
....++..|..+...|.++.|....+++-.+.-.+.+.++..
T Consensus 12 el~kl~~~i~~~~~kL~n~~F~~kAP~eVve~er~kl~~~~~ 53 (66)
T PF10458_consen 12 ELEKLEKEIERLEKKLSNENFVEKAPEEVVEKEREKLEELEE 53 (66)
T ss_dssp HHHHHHHHHHHHHHHHCSTTHHHHS-CCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCccccccCCHHHHHHHHHHHHHHHH
Confidence 345667777778888887788888887776666666665554
No 61
>KOG0102 consensus Molecular chaperones mortalin/PBP74/GRP75, HSP70 superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=64.42 E-value=81 Score=31.45 Aligned_cols=72 Identities=17% Similarity=0.341 Sum_probs=39.4
Q ss_pred cccccccccccccccCCCCCCCCcc----------eEEEEEEEecCCcEEEEeeecccccccceEEecCCCCCCHHHHHH
Q 021272 116 ARTRDNNLLGKFELSGIPPAPRGVP----------QITVCFDIDANGILNVSAEDKTTGQKNKITITNDKGRLSKEEIEK 185 (315)
Q Consensus 116 ~~~~~n~~Lg~~~l~~i~~~~~g~~----------~i~v~f~~d~nGil~V~a~~~~t~~~~~l~i~~~~~~Ls~~ei~~ 185 (315)
..+++...|..+++.++++.|.... ++-..|.+ --|.+.|+..+...|... +.-++.+..|++++++.
T Consensus 177 qaTkdag~iagl~vlrvineptaaalaygld~k~~g~iaV~dL-gggtfdisilei~~gvfe-vksTngdtflggedfd~ 254 (640)
T KOG0102|consen 177 QATKDAGQIAGLNVLRVINEPTAAALAYGLDKKEDGVIAVFDL-GGGTFDISILEIEDGVFE-VKSTNGDTHLGGEDFDN 254 (640)
T ss_pred HHhHhhhhhccceeeccCCccchhHHhhcccccCCCceEEEEc-CCceeeeeeehhccceeE-EEeccCccccChhHHHH
Confidence 3456666688888888888885322 22222222 123444444433333222 22334455699999998
Q ss_pred HHHH
Q 021272 186 MVQE 189 (315)
Q Consensus 186 ~~~~ 189 (315)
....
T Consensus 255 ~~~~ 258 (640)
T KOG0102|consen 255 ALVR 258 (640)
T ss_pred HHHH
Confidence 7664
No 62
>PRK13318 pantothenate kinase; Reviewed
Probab=64.25 E-value=7.8 Score=34.62 Aligned_cols=20 Identities=25% Similarity=0.634 Sum_probs=18.0
Q ss_pred EEEEeccccceEEEEEeCCe
Q 021272 9 AIGIDLGTTYSCVGVWQHDR 28 (315)
Q Consensus 9 ~iGID~GTtns~va~~~~g~ 28 (315)
+++||+|.|+++++++.+++
T Consensus 2 iL~IDIGnT~iK~al~d~g~ 21 (258)
T PRK13318 2 LLAIDVGNTNTVFGLYEGGK 21 (258)
T ss_pred EEEEEECCCcEEEEEEECCE
Confidence 68999999999999998664
No 63
>PF00349 Hexokinase_1: Hexokinase; InterPro: IPR022672 Hexokinase is an important enzyme that catalyses the ATP-dependent conversion of aldo- and keto-hexose sugars to the hexose-6-phosphate (H6P). The enzyme can catalyse this reaction on glucose, fructose, sorbitol and glucosamine, and as such is the first step in a number of metabolic pathways []. The addition of a phosphate group to the sugar acts to trap it in a cell, since the negatively charged phosphate cannot easily traverse the plasma membrane. The enzyme is widely distributed in eukaryotes. There are three isozymes of hexokinase in yeast (PI, PII and glucokinase): isozymes PI and PII phosphorylate both aldo- and keto-sugars; glucokinase is specific for aldo-hexoses. All three isozymes contain two domains []. Structural studies of yeast hexokinase reveal a well-defined catalytic pocket that binds ATP and hexose, allowing easy transfer of the phosphate from ATP to the sugar []. Vertebrates contain four hexokinase isozymes, designated I to IV, where types I to III contain a duplication of the two-domain yeast-type hexokinases. Both the N- and C-terminal halves bind hexose and H6P, though in types I an III only the C-terminal half supports catalysis, while both halves support catalysis in type II. The N-terminal half is the regulatory region. Type IV hexokinase is similar to the yeast enzyme in containing only the two domains, and is sometimes incorrectly referred to as glucokinase. The different vertebrate isozymes differ in their catalysis, localisation and regulation, thereby contributing to the different patterns of glucose metabolism in different tissues []. Whereas types I to III can phosphorylate a variety of hexose sugars and are inhibited by glucose-6-phosphate (G6P), type IV is specific for glucose and shows no G6P inhibition. Type I enzyme may have a catabolic function, producing H6P for energy production in glycolysis; it is bound to the mitochondrial membrane, which enables the coordination of glycolysis with the TCA cycle. Types II and III enzyme may have anabolic functions, providing H6P for glycogen or lipid synthesis. Type IV enzyme is found in the liver and pancreatic beta-cells, where it is controlled by insulin (activation) and glucagon (inhibition). In pancreatic beta-cells, type IV enzyme acts as a glucose sensor to modify insulin secretion. Mutations in type IV hexokinase have been associated with diabetes mellitus. Hexokinase (2.7.1.1 from EC), a fructose and glucose phosphorylating enzyme, contains two structurally similar domains represented by this family and PF03727 from PFAM. Some hexokinases have two copies of each of these domains. This entry represents the N-terminal domain.; GO: 0005524 ATP binding, 0016773 phosphotransferase activity, alcohol group as acceptor, 0005975 carbohydrate metabolic process; PDB: 3O1W_A 3O6W_A 3O4W_B 3O08_B 3O80_A 3O5B_A 3O8M_A 3O1B_A 1BG3_A 4DHY_A ....
Probab=64.24 E-value=5.6 Score=34.46 Aligned_cols=20 Identities=30% Similarity=0.446 Sum_probs=17.6
Q ss_pred CCCEEEEeccccceEEEEEe
Q 021272 6 EGPAIGIDLGTTYSCVGVWQ 25 (315)
Q Consensus 6 ~~~~iGID~GTtns~va~~~ 25 (315)
.+.+++||||.||..|+.+.
T Consensus 62 ~G~~LalDlGGTnlRv~~V~ 81 (206)
T PF00349_consen 62 KGDFLALDLGGTNLRVALVE 81 (206)
T ss_dssp EEEEEEEEESSSSEEEEEEE
T ss_pred CceEEEEeecCcEEEEEEEE
Confidence 45799999999999999883
No 64
>COG1924 Activator of 2-hydroxyglutaryl-CoA dehydratase (HSP70-class ATPase domain) [Lipid metabolism]
Probab=63.51 E-value=8.5 Score=36.29 Aligned_cols=24 Identities=21% Similarity=0.253 Sum_probs=21.2
Q ss_pred CCCCEEEEeccccceEEEEEeCCe
Q 021272 5 GEGPAIGIDLGTTYSCVGVWQHDR 28 (315)
Q Consensus 5 ~~~~~iGID~GTtns~va~~~~g~ 28 (315)
+...++|||-|+|.++++++.++.
T Consensus 133 ~~~~~LGID~GSTtTK~VLm~d~~ 156 (396)
T COG1924 133 QGMYTLGIDSGSTTTKAVLMEDGK 156 (396)
T ss_pred cCcEEEEEecCCcceeEEEEeCCC
Confidence 456799999999999999998886
No 65
>PRK13321 pantothenate kinase; Reviewed
Probab=63.09 E-value=8.4 Score=34.41 Aligned_cols=20 Identities=40% Similarity=0.594 Sum_probs=17.9
Q ss_pred EEEEeccccceEEEEEeCCe
Q 021272 9 AIGIDLGTTYSCVGVWQHDR 28 (315)
Q Consensus 9 ~iGID~GTtns~va~~~~g~ 28 (315)
+++||+|.|++++|++.+++
T Consensus 2 iL~IDIGnT~ik~gl~~~~~ 21 (256)
T PRK13321 2 LLLIDVGNTNIKLGVFDGDR 21 (256)
T ss_pred EEEEEECCCeEEEEEEECCE
Confidence 68999999999999998663
No 66
>PTZ00004 actin-2; Provisional
Probab=62.18 E-value=11 Score=35.60 Aligned_cols=47 Identities=26% Similarity=0.316 Sum_probs=31.7
Q ss_pred CCCEEEEeccccceEEEEEeCCeEEEEEcCCCCcccceEEEecC----------CceeecHHHHH
Q 021272 6 EGPAIGIDLGTTYSCVGVWQHDRVEIIANDQGNRTTPSYVAFTD----------TERLIGDAAKN 60 (315)
Q Consensus 6 ~~~~iGID~GTtns~va~~~~g~~~vi~~~~~~~~~PS~v~~~~----------~~~~vG~~A~~ 60 (315)
+..+|-||+||.++.+++..+..|.++ +||+|.... ...++|..|..
T Consensus 5 ~~~~vViD~Gs~~~k~G~ag~~~P~~~--------~ps~v~~~~~~~~~~~~~~~~~~~g~~~~~ 61 (378)
T PTZ00004 5 ETNAAVVDNGSGMVKAGFAGDDAPRCV--------FPSIVGRPKNPGIMVGMEEKDCYVGDEAQD 61 (378)
T ss_pred CCCeEEEECCCCeEEEeeCCCCCCCEE--------ccceeEEecccccccCcCCCceEECchhhc
Confidence 345799999999999998866656433 356654421 24567887753
No 67
>PLN02405 hexokinase
Probab=61.73 E-value=5.9 Score=39.08 Aligned_cols=84 Identities=17% Similarity=0.088 Sum_probs=49.7
Q ss_pred CCCCEEEEeccccceEEEEEe-CC-eEEEEEcCCCCcccceEEEecCCceeecHHHHHhHH---hCCCc-c-hhhhhhhh
Q 021272 5 GEGPAIGIDLGTTYSCVGVWQ-HD-RVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVA---MNPLN-T-VFDAKRLI 77 (315)
Q Consensus 5 ~~~~~iGID~GTtns~va~~~-~g-~~~vi~~~~~~~~~PS~v~~~~~~~~vG~~A~~~~~---~~~~~-~-~~~~Krli 77 (315)
-.+.+++||||.||..|+.+. .| .-.++.....+..+|.-+.-.....++..-|..... .+... . ...-+.-|
T Consensus 93 E~G~flAlDlGGTNfRV~~V~L~g~~~~~~~~~~~~~~ip~~~~~gt~~~LFdfIA~~i~~fl~~~~~~~~~~~~~~l~L 172 (497)
T PLN02405 93 EKGLFYALDLGGTNFRVLRVLLGGKDGRVVKQEFEEVSIPPHLMTGSSDALFDFIAAALAKFVATEGEDFHLPPGRQREL 172 (497)
T ss_pred cceeEEEEecCCceEEEEEEEEcCCCCceeEEEEEEeecChhhccCCHHHHHHHHHHHHHHHHHhcccccccCccccccc
Confidence 346799999999999999884 22 111222233456677766655546677777766532 11111 1 11234668
Q ss_pred cCCCCChhhhc
Q 021272 78 GRRFSDSSVQG 88 (315)
Q Consensus 78 G~~~~~~~v~~ 88 (315)
|-+|+-|..|.
T Consensus 173 GfTFSFPv~Qt 183 (497)
T PLN02405 173 GFTFSFPVKQT 183 (497)
T ss_pred ceeEeeeeccC
Confidence 88888775553
No 68
>PF03652 UPF0081: Uncharacterised protein family (UPF0081); InterPro: IPR005227 Holliday junction resolvases (HJRs) are key enzymes of DNA recombination. The principal HJRs are now known or confidently predicted for all bacteria and archaea whose genomes have been completely sequenced, with many species encoding multiple potential HJRs. Structural and evolutionary relationships of HJRs and related nucleases suggests that the HJR function has evolved independently from at least four distinct structural folds, namely RNase H, endonuclease, endonuclease VII-colicin E and RusA (IPR008822 from INTERPRO): The endonuclease fold, whose structural prototypes are the phage exonuclease, the very short patch repair nuclease (Vsr) and type II restriction enzymes, is shown to encompass by far a greater diversity of nucleases than previously suspected. This fold unifies archaeal HJRs (IPR002732 from INTERPRO), repair nucleases such as RecB (IPR004586 from INTERPRO) and Vsr (IPR004603 from INTERPRO), restriction enzymes and a variety of predicted nucleases whose specific activities remain to be determined. The RNase H fold characterises the RuvC family (IPR002176 from INTERPRO), which is nearly ubiquitous in bacteria, and in addition the YqgF family (IPR005227 from INTERPRO). The proteins of this family, typified by Escherichia coli YqgF, are likely to function as an alternative to RuvC in most bacteria, but could be the principal HJRs in low-GC Gram-positive bacteria and Aquifex. Endonuclease VII of phage T4 (IPR004211 from INTERPRO) is shown to serve as a structural template for many nucleases, including McrA and other type II restriction enzymes. Together with colicin E7, endonuclease VII defines a distinct metal-dependent nuclease fold. Horizontal gene transfer, lineage-specific gene loss and gene family expansion, and non-orthologous gene displacement seem to have been major forces in the evolution of HJRs and related nucleases. A remarkable case of displacement is seen in the Lyme disease spirochete Borrelia burgdorferi, which does not possess any of the typical HJRs, but instead encodes, in its chromosome and each of the linear plasmids, members of the exonuclease family predicted to function as HJRs. The diversity of HJRs and related nucleases in bacteria and archaea contrasts with their near absence in eukaryotes. The few detected eukaryotic representatives of the endonuclease fold and the RNase H fold have probably been acquired from bacteria via horizontal gene transfer. The identity of the principal HJR(s) involved in recombination in eukaryotes remains uncertain; this function could be performed by topoisomerase IB or by a novel, so far undetected, class of enzymes. Likely HJRs and related nucleases were identified in the genomes of numerous bacterial and eukaryotic DNA viruses. Gene flow between viral and cellular genomes has probably played a major role in the evolution of this class of enzymes. This family represents the YqgF family of putative Holliday junction resolvases. With the exception of the spirochetes, the YqgF family is represented in all bacterial lineages, including the mycoplasmas with their highly degenerate genomes. The RuvC resolvases are conspicuously absent in the low-GC Gram-positive bacterial lineage, with the exception of Ureaplasma parvum (Ureaplasma urealyticum biotype 1) (Q9PQY7 from SWISSPROT, []). Furthermore, loss of function ruvC mutants of E. coli show a residual HJR activity that cannot be ascribed to the prophage-encoded RusA resolvase []. This suggests that the YqgF family proteins could be alternative HJRs whose function partially overlaps with that of RuvC [].; GO: 0016788 hydrolase activity, acting on ester bonds, 0006281 DNA repair, 0006310 DNA recombination, 0006974 response to DNA damage stimulus, 0005737 cytoplasm; PDB: 1NU0_A 1OVQ_A 1NMN_B 1VHX_B 1IV0_A.
Probab=60.65 E-value=10 Score=30.51 Aligned_cols=20 Identities=25% Similarity=0.306 Sum_probs=17.8
Q ss_pred CEEEEeccccceEEEEEeCC
Q 021272 8 PAIGIDLGTTYSCVGVWQHD 27 (315)
Q Consensus 8 ~~iGID~GTtns~va~~~~g 27 (315)
.++|||+|+..+=||+..+.
T Consensus 2 riL~lD~G~kriGiAvsd~~ 21 (135)
T PF03652_consen 2 RILGLDYGTKRIGIAVSDPL 21 (135)
T ss_dssp EEEEEEECSSEEEEEEEETT
T ss_pred eEEEEEeCCCeEEEEEecCC
Confidence 38999999999999998765
No 69
>PRK13331 pantothenate kinase; Reviewed
Probab=60.06 E-value=13 Score=33.19 Aligned_cols=28 Identities=11% Similarity=0.139 Sum_probs=22.3
Q ss_pred CCCCCCCCEEEEeccccceEEEEEeCCe
Q 021272 1 MAGKGEGPAIGIDLGTTYSCVGVWQHDR 28 (315)
Q Consensus 1 ~~~~~~~~~iGID~GTtns~va~~~~g~ 28 (315)
|+..-...++.||.|+||++++++.+++
T Consensus 1 ~~~~~~~~~L~iDiGNT~~~~g~f~~~~ 28 (251)
T PRK13331 1 MMFHTSNEWLALMIGNSRLHWGYFSGET 28 (251)
T ss_pred CCCCCCCcEEEEEeCCCcEEEEEEECCE
Confidence 3444455689999999999999998765
No 70
>PTZ00281 actin; Provisional
Probab=59.66 E-value=12 Score=35.34 Aligned_cols=47 Identities=26% Similarity=0.348 Sum_probs=31.6
Q ss_pred CCCEEEEeccccceEEEEEeCCeEEEEEcCCCCcccceEEEec----------CCceeecHHHHH
Q 021272 6 EGPAIGIDLGTTYSCVGVWQHDRVEIIANDQGNRTTPSYVAFT----------DTERLIGDAAKN 60 (315)
Q Consensus 6 ~~~~iGID~GTtns~va~~~~g~~~vi~~~~~~~~~PS~v~~~----------~~~~~vG~~A~~ 60 (315)
+-..|-||+|+.++.+++.....|.++ +||+|... ....++|..|..
T Consensus 5 ~~~~vViD~Gs~~~k~G~age~~P~~i--------~ps~vg~~~~~~~~~~~~~~~~~~g~~~~~ 61 (376)
T PTZ00281 5 DVQALVIDNGSGMCKAGFAGDDAPRAV--------FPSIVGRPRHTGVMVGMGQKDSYVGDEAQS 61 (376)
T ss_pred cCCeEEEECCCCeEEEeeCCCCCCCee--------ccccceeecCcccccCcccCCeEECchhhc
Confidence 445789999999999999866666433 35555432 224567887653
No 71
>PRK13326 pantothenate kinase; Reviewed
Probab=57.53 E-value=14 Score=33.24 Aligned_cols=25 Identities=20% Similarity=0.359 Sum_probs=21.1
Q ss_pred CCCCCEEEEeccccceEEEEEeCCe
Q 021272 4 KGEGPAIGIDLGTTYSCVGVWQHDR 28 (315)
Q Consensus 4 ~~~~~~iGID~GTtns~va~~~~g~ 28 (315)
+.-+..+.||.|+||++++++.+++
T Consensus 3 ~~~~~~L~IDiGNT~ik~glf~~~~ 27 (262)
T PRK13326 3 KVLSSQLIIDIGNTSISFALYKDNK 27 (262)
T ss_pred ccccEEEEEEeCCCeEEEEEEECCE
Confidence 3446789999999999999999765
No 72
>TIGR02627 rhamnulo_kin rhamnulokinase. This model describes rhamnulokinase, an enzyme that catalyzes the second step in rhamnose catabolism.
Probab=57.35 E-value=5.5 Score=38.71 Aligned_cols=17 Identities=24% Similarity=0.325 Sum_probs=14.9
Q ss_pred EEEeccccceEEEEEeC
Q 021272 10 IGIDLGTTYSCVGVWQH 26 (315)
Q Consensus 10 iGID~GTtns~va~~~~ 26 (315)
+|||+|||+++++++..
T Consensus 1 ~aiD~Gtt~~k~~l~~~ 17 (454)
T TIGR02627 1 VAVDLGASSGRVMLASY 17 (454)
T ss_pred CcEeccCCchheEEEEE
Confidence 58999999999998853
No 73
>PTZ00009 heat shock 70 kDa protein; Provisional
Probab=57.35 E-value=90 Score=32.01 Aligned_cols=80 Identities=19% Similarity=0.192 Sum_probs=44.9
Q ss_pred HHHHHhHHHHHHHHHhhcccccccccCCHHHHHHHHHHHHHHHHHHhcCccccHHHHHHHHHHHHHHHHHHHHH----HH
Q 021272 204 VEAKNALENYAYNMRNTIKDDQIGSKLSAADKKRIEDTIEEAMQWLDSNQLAEADEFEDKMKELESICNPIIAK----MY 279 (315)
Q Consensus 204 ~~~kn~LEs~iy~~r~~l~~~~~~~~~~~~e~~~l~~~l~e~e~wL~~~~~a~~~~~~~kl~~L~~~~~pi~~r----~~ 279 (315)
.+.+..+...+.+.++||.+.. ....+.+.+.++++++-++. +..| +..+ +-
T Consensus 566 ~ee~~~l~~~l~~~~~wL~~~~------~~~~~~~~~kl~eL~~~~~p--------i~~r----------~~~~~~~~~~ 621 (653)
T PTZ00009 566 DSDKATIEKAIDEALEWLEKNQ------LAEKEEFEHKQKEVESVCNP--------IMTK----------MYQAAGGGMP 621 (653)
T ss_pred HHHHHHHHHHHHHHHHHHhcCC------chhHHHHHHHHHHHHHHHHH--------HHHH----------HHhhccCCCC
Confidence 3446677778888888886311 23445566555555543332 1111 1222 22
Q ss_pred cCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 021272 280 QGGVAPGAGPAPGPGMDESAPPAGGSSA 307 (315)
Q Consensus 280 e~~~~~~~~~~~~~~~~~~~~~~~~~~~ 307 (315)
+.--++-|||-||+|.|+|+.+|+|-..
T Consensus 622 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 649 (653)
T PTZ00009 622 GGMPGGMPGGMPGGAGPAGAGASSGPTV 649 (653)
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCcc
Confidence 3333344788899888888777777644
No 74
>PF13941 MutL: MutL protein
Probab=57.28 E-value=13 Score=36.19 Aligned_cols=43 Identities=23% Similarity=0.425 Sum_probs=30.6
Q ss_pred EEEEeccccceEEEEEe--CCeEEEEEcCCCCcccceEEEecCCceeecHH
Q 021272 9 AIGIDLGTTYSCVGVWQ--HDRVEIIANDQGNRTTPSYVAFTDTERLIGDA 57 (315)
Q Consensus 9 ~iGID~GTtns~va~~~--~g~~~vi~~~~~~~~~PS~v~~~~~~~~vG~~ 57 (315)
++-+|||+|++++..+. .+..+++- .-..||.| -. .++.+|-.
T Consensus 2 ~L~~DiGST~Tk~~l~d~~~~~~~~ig----~a~apTTv-~~-~Dv~~G~~ 46 (457)
T PF13941_consen 2 VLVVDIGSTYTKVTLFDLVDGEPRLIG----QAEAPTTV-EP-GDVTIGLN 46 (457)
T ss_pred EEEEEeCCcceEEeEEeccCCccEEEE----EEeCCCCc-Cc-ccHHHHHH
Confidence 68899999999999998 78887775 23346666 22 34555544
No 75
>COG5026 Hexokinase [Carbohydrate transport and metabolism]
Probab=54.82 E-value=12 Score=36.07 Aligned_cols=27 Identities=30% Similarity=0.384 Sum_probs=20.9
Q ss_pred CCCCEEEEeccccceEEEEEe---CCeEEE
Q 021272 5 GEGPAIGIDLGTTYSCVGVWQ---HDRVEI 31 (315)
Q Consensus 5 ~~~~~iGID~GTtns~va~~~---~g~~~v 31 (315)
..+.++.||||.||..||.+. +|..++
T Consensus 73 e~g~~LaiD~GGTnlRvc~V~l~g~gt~~~ 102 (466)
T COG5026 73 ESGSVLAIDLGGTNLRVCLVVLGGDGTFDI 102 (466)
T ss_pred CCCCEEEEecCCceEEEEEEEeCCCCCccc
Confidence 356899999999999999884 345443
No 76
>PF06277 EutA: Ethanolamine utilisation protein EutA; InterPro: IPR009377 Proteins in this entry are EutA ethanolamine utilization proteins, reactivating factors for ethanolamine ammonia lyase, encoded by the ethanolamine utilization eut operon. The holoenzyme of adenosylcobalamin-dependent ethanolamine ammonia-lyase (EutBC, IPR0092462 from INTERPRO, IPR010628 from INTERPRO), which is part of the ethanolamine utilization pathway [, , ], undergoes suicidal inactivation during catalysis as well as inactivation in the absence of substrate. The inactivation involves the irreversible cleavage of the Co-C bond of the coenzyme. The inactivated holoenzyme undergoes rapid and continuous reactivation in the presence of ATP, Mg2+, and free adenosylcobalamin in permeabilised cells (in situ), homogenate, and cell extracts of Escherichia coli. The EutA protein is essential for reactivation. It was demonstrated with purified recombinant EutA that both the suicidally inactivated and O2-inactivated holoethanolamine ammonia lyase underwent rapid reactivation in vitro by EutA in the presence of adenosylcobalamin, ATP, and Mg2+ []. The inactive enzyme-cyanocobalamin complex was also activated in situ and in vitro by EutA under the same conditions. Thus EutA is believed to be the only component of the reactivating factor for ethanolamine ammonia lyase. Reactivation and activation occur through the exchange of modified coenzyme for free intact adenosylcobalamin []. Bacteria that harbor the ethanolamine utilization pathway can use ethanolamine as a source of carbon and nitrogen. For more information on the ethanolamine utilization pathway, please see IPR009194 from INTERPRO, IPR012408 from INTERPRO.
Probab=54.78 E-value=21 Score=34.88 Aligned_cols=17 Identities=29% Similarity=0.528 Sum_probs=14.4
Q ss_pred EEEEeccccceEEEEEe
Q 021272 9 AIGIDLGTTYSCVGVWQ 25 (315)
Q Consensus 9 ~iGID~GTtns~va~~~ 25 (315)
.+|||+|||.+.+-+.+
T Consensus 5 SVGIDIGTSTTQlvfSr 21 (473)
T PF06277_consen 5 SVGIDIGTSTTQLVFSR 21 (473)
T ss_pred EEEEeecCCceeEEEEE
Confidence 58999999999986653
No 77
>PRK00109 Holliday junction resolvase-like protein; Reviewed
Probab=53.73 E-value=15 Score=29.61 Aligned_cols=21 Identities=33% Similarity=0.496 Sum_probs=17.9
Q ss_pred CCCEEEEeccccceEEEEEeC
Q 021272 6 EGPAIGIDLGTTYSCVGVWQH 26 (315)
Q Consensus 6 ~~~~iGID~GTtns~va~~~~ 26 (315)
...++|||+|+..+=+|+..+
T Consensus 3 ~~~iLalD~G~kriGvAv~d~ 23 (138)
T PRK00109 3 SGRILGLDVGTKRIGVAVSDP 23 (138)
T ss_pred CCcEEEEEeCCCEEEEEEecC
Confidence 345999999999999998765
No 78
>PRK11546 zraP zinc resistance protein; Provisional
Probab=53.48 E-value=1.2e+02 Score=24.62 Aligned_cols=20 Identities=10% Similarity=0.155 Sum_probs=13.8
Q ss_pred CCCCHHHHHHHHHHHHHhhh
Q 021272 176 GRLSKEEIEKMVQEAEKYKS 195 (315)
Q Consensus 176 ~~Ls~~ei~~~~~~~~~~~~ 195 (315)
..|+.|+.+.+.....+|..
T Consensus 42 ~~LT~EQQa~~q~I~~~f~~ 61 (143)
T PRK11546 42 APLTTEQQAAWQKIHNDFYA 61 (143)
T ss_pred ccCCHHHHHHHHHHHHHHHH
Confidence 35999988777666666653
No 79
>PRK00292 glk glucokinase; Provisional
Probab=53.47 E-value=13 Score=34.08 Aligned_cols=19 Identities=26% Similarity=0.338 Sum_probs=17.2
Q ss_pred CCEEEEeccccceEEEEEe
Q 021272 7 GPAIGIDLGTTYSCVGVWQ 25 (315)
Q Consensus 7 ~~~iGID~GTtns~va~~~ 25 (315)
..++|||+|.|++.++++.
T Consensus 2 ~~~lgiDIGgT~i~~~l~~ 20 (316)
T PRK00292 2 KPALVGDIGGTNARFALCD 20 (316)
T ss_pred ceEEEEEcCccceEEEEEe
Confidence 3589999999999999996
No 80
>PF07820 TraC: TraC-like protein; InterPro: IPR012930 The members of this family are sequences that are similar to TraC (Q84HT8 from SWISSPROT) from Rhizobium etli. The gene encoding this protein is one of a group of genes found on plasmid p42a of Rhizobium etli (strain CFN 42/ATCC 51251) that are thought to be involved in the process of plasmid self-transmission. Mobilisation of plasmid p42a is of importance as it is required for transfer of plasmid p42d, the symbiotic plasmid which carries most of the genes required for nodulation and nitrogen fixation by this symbiotic bacterium. The predicted protein products of p42a are similar to known transfer proteins of Agrobacterium tumefaciens plasmid pTiC58 []. ; GO: 0000746 conjugation
Probab=53.24 E-value=83 Score=23.47 Aligned_cols=21 Identities=24% Similarity=0.344 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHcCCCCC
Q 021272 265 KELESICNPIIAKMYQGGVAP 285 (315)
Q Consensus 265 ~~L~~~~~pi~~r~~e~~~~~ 285 (315)
.+|....+.|..||.......
T Consensus 46 ~eL~~~FeeIa~RFrk~~~~~ 66 (92)
T PF07820_consen 46 AELQAAFEEIAARFRKGKKKQ 66 (92)
T ss_pred HHHHHHHHHHHHHHhcccccc
Confidence 568888999999999765443
No 81
>PRK10719 eutA reactivating factor for ethanolamine ammonia lyase; Provisional
Probab=53.24 E-value=19 Score=35.07 Aligned_cols=50 Identities=34% Similarity=0.370 Sum_probs=30.3
Q ss_pred CEEEEeccccceEEEEEe----C-------CeEEEEEcCCCCcccceEEEecCC--ceeecHHHHH
Q 021272 8 PAIGIDLGTTYSCVGVWQ----H-------DRVEIIANDQGNRTTPSYVAFTDT--ERLIGDAAKN 60 (315)
Q Consensus 8 ~~iGID~GTtns~va~~~----~-------g~~~vi~~~~~~~~~PS~v~~~~~--~~~vG~~A~~ 60 (315)
..+|||+|||.+.+-+.+ + .+++++. -+-.++|-|+|+.- ...+-..|..
T Consensus 7 ~SVGIDIGTsTTqlvfSrl~l~n~a~~~~vpr~~I~d---kev~yrS~i~fTPl~~~~~ID~~~i~ 69 (475)
T PRK10719 7 LSVGIDIGTTTTQVIFSRLELENRASVFQVPRIEIID---KEIIYRSPIYFTPLLKQGEIDEAAIK 69 (475)
T ss_pred EEEEEeccCceEEEEEEEEEEecccccccCceEEEee---eEEEEecCceecCCCCCccccHHHHH
Confidence 468999999999986653 1 1223332 45567788888753 3334444433
No 82
>KOG0100 consensus Molecular chaperones GRP78/BiP/KAR2, HSP70 superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=53.08 E-value=21 Score=34.19 Aligned_cols=71 Identities=21% Similarity=0.346 Sum_probs=39.4
Q ss_pred cccccccccccccccCCCCCCCCcc-----------eEEEEEEEecCCcEEEEeeecccccccceEEecCCCCCCHHHHH
Q 021272 116 ARTRDNNLLGKFELSGIPPAPRGVP-----------QITVCFDIDANGILNVSAEDKTTGQKNKITITNDKGRLSKEEIE 184 (315)
Q Consensus 116 ~~~~~n~~Lg~~~l~~i~~~~~g~~-----------~i~v~f~~d~nGil~V~a~~~~t~~~~~l~i~~~~~~Ls~~ei~ 184 (315)
..+++...|+.+++..|.+.|.+.. +=.+.|.+ --|.|.|+...-.+|....+. ++.+..|.+++++
T Consensus 189 QATKDAGtIAgLnV~RIiNePTaAAIAYGLDKk~gEknilVfDL-GGGTFDVSlLtIdnGVFeVla-TnGDThLGGEDFD 266 (663)
T KOG0100|consen 189 QATKDAGTIAGLNVVRIINEPTAAAIAYGLDKKDGEKNILVFDL-GGGTFDVSLLTIDNGVFEVLA-TNGDTHLGGEDFD 266 (663)
T ss_pred hhhcccceeccceEEEeecCccHHHHHhcccccCCcceEEEEEc-CCceEEEEEEEEcCceEEEEe-cCCCcccCccchH
Confidence 4466677788888877777764321 12234444 235555555444444433332 2334458898888
Q ss_pred HHHH
Q 021272 185 KMVQ 188 (315)
Q Consensus 185 ~~~~ 188 (315)
..+-
T Consensus 267 ~rvm 270 (663)
T KOG0100|consen 267 QRVM 270 (663)
T ss_pred HHHH
Confidence 6543
No 83
>PTZ00466 actin-like protein; Provisional
Probab=52.92 E-value=18 Score=34.39 Aligned_cols=46 Identities=30% Similarity=0.447 Sum_probs=31.5
Q ss_pred CCEEEEeccccceEEEEEeCCeEEEEEcCCCCcccceEEEec----------CCceeecHHHHH
Q 021272 7 GPAIGIDLGTTYSCVGVWQHDRVEIIANDQGNRTTPSYVAFT----------DTERLIGDAAKN 60 (315)
Q Consensus 7 ~~~iGID~GTtns~va~~~~g~~~vi~~~~~~~~~PS~v~~~----------~~~~~vG~~A~~ 60 (315)
...|-||+|+.++.+++.....|.++ +||+|... .+..+||..|..
T Consensus 12 ~~~iViD~GS~~~K~G~ag~~~P~~~--------~ps~vg~~k~~~~~~~~~~~~~~vG~~~~~ 67 (380)
T PTZ00466 12 NQPIIIDNGTGYIKAGFAGEDVPNLV--------FPSYVGRPKYKRVMAGAVEGNIFVGNKAEE 67 (380)
T ss_pred CCeEEEECCCCcEEEeeCCCCCCCEe--------ccceeeeecCccccccCCCCCeEECchhhh
Confidence 34688999999999999866666543 25555442 224578888754
No 84
>PF11593 Med3: Mediator complex subunit 3 fungal; InterPro: IPR020998 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. This entry represents the subunit Med3, which is a physical target for Cyc8-Tup1, a yeast transcriptional co-repressor []. ; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex
Probab=52.41 E-value=19 Score=33.77 Aligned_cols=35 Identities=29% Similarity=0.304 Sum_probs=15.0
Q ss_pred HHHHHHHhcCccccHHHHHHHHHHHHHHHHHHHHHH
Q 021272 243 EEAMQWLDSNQLAEADEFEDKMKELESICNPIIAKM 278 (315)
Q Consensus 243 ~e~e~wL~~~~~a~~~~~~~kl~~L~~~~~pi~~r~ 278 (315)
+++++||..+|. +++.+.+++.+-++.+.|+.-+|
T Consensus 11 eeLe~kLa~~d~-~Kd~V~~~I~ea~~sILPlRL~F 45 (379)
T PF11593_consen 11 EELEEKLASNDN-SKDSVMDKISEAQDSILPLRLQF 45 (379)
T ss_pred HHHHHHHhcCCc-hHHHHHHHHHHHHhccccHHHHH
Confidence 344444443333 44444444444444444444333
No 85
>PF02075 RuvC: Crossover junction endodeoxyribonuclease RuvC; InterPro: IPR002176 The Escherichia coli ruvC gene is involved in DNA repair and in the late step of RecE and RecF pathway recombination []. RuvC protein (3.1.22.4 from EC) cleaves cruciform junctions, which are formed by the extrusion of inverted repeat sequences from a super-coiled plasmid and which are structurally analogous to Holliday junctions, by introducing nicks into strands with the same polarity. The nicks leave a 5'terminal phosphate and a 3'terminal hydroxyl group which are ligated by E. coli or Bacteriophage T4 DNA ligases. Analysis of the cleavage sites suggests that DNA topology rather than a particular sequence determines the cleavage site. RuvC protein also cleaves Holliday junctions that are formed between gapped circular and linear duplex DNA by the function of RecA protein. The active form of RuvC protein is a dimer. This is mechanistically suited for an endonuclease involved in swapping DNA strands at the crossover junctions. It is inferred that RuvC protein is an endonuclease that resolves Holliday structures in vivo []. RucC is a small protein of about 20 kD. It requires and binds a magnesium ion. The structure of E. coli ruvC is a 3-layer alpha-beta sandwich containing a 5-stranded beta-sheet sandwiched between 5 alpha-helices [].; GO: 0004520 endodeoxyribonuclease activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1HJR_A.
Probab=52.08 E-value=25 Score=28.68 Aligned_cols=25 Identities=24% Similarity=0.437 Sum_probs=17.1
Q ss_pred EEEEeccccceEEEEEe--CCeEEEEE
Q 021272 9 AIGIDLGTTYSCVGVWQ--HDRVEIIA 33 (315)
Q Consensus 9 ~iGID~GTtns~va~~~--~g~~~vi~ 33 (315)
++|||-|++++-.|++. ++...++.
T Consensus 1 ILGIDPgl~~tG~avi~~~~~~~~~i~ 27 (149)
T PF02075_consen 1 ILGIDPGLSNTGYAVIEEDGGKLRLID 27 (149)
T ss_dssp EEEEE--SSEEEEEEEEEETTEEEEEE
T ss_pred CEEECCCCCCeeEEEEEeeCCEEEEEE
Confidence 68999999999999884 44445444
No 86
>PRK09472 ftsA cell division protein FtsA; Reviewed
Probab=51.78 E-value=23 Score=34.12 Aligned_cols=27 Identities=26% Similarity=0.374 Sum_probs=20.3
Q ss_pred CCEEEEeccccceEEEEEe---CCeEEEEE
Q 021272 7 GPAIGIDLGTTYSCVGVWQ---HDRVEIIA 33 (315)
Q Consensus 7 ~~~iGID~GTtns~va~~~---~g~~~vi~ 33 (315)
..++|||+||+..++.+.. ++.++|+-
T Consensus 8 ~~i~~lDIGsskv~~vv~~~~~~~~~~i~g 37 (420)
T PRK09472 8 KLVVGLEIGTAKVAALVGEVLPDGMVNIIG 37 (420)
T ss_pred CEEEEEEcccceEEEEEEEEcCCCCEEEEE
Confidence 4688999999999876553 45566665
No 87
>PRK09343 prefoldin subunit beta; Provisional
Probab=51.05 E-value=1.2e+02 Score=23.77 Aligned_cols=54 Identities=20% Similarity=0.247 Sum_probs=37.3
Q ss_pred ccCCHHHHHHHHHHHHHHHHHHhcCccccHHHHHHHHHHHHHHHHHHHHHHHcCCCCC
Q 021272 228 SKLSAADKKRIEDTIEEAMQWLDSNQLAEADEFEDKMKELESICNPIIAKMYQGGVAP 285 (315)
Q Consensus 228 ~~~~~~e~~~l~~~l~e~e~wL~~~~~a~~~~~~~kl~~L~~~~~pi~~r~~e~~~~~ 285 (315)
..+-..++.++...|++-.+.+.. .+..+.++.+.|+.........+.+.....
T Consensus 62 ~vlv~qd~~e~~~~l~~r~E~ie~----~ik~lekq~~~l~~~l~e~q~~l~~ll~~~ 115 (121)
T PRK09343 62 NLLVKVDKTKVEKELKERKELLEL----RSRTLEKQEKKLREKLKELQAKINEMLSKY 115 (121)
T ss_pred HHHhhccHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 344446777777777766666664 577788888888888887777777765444
No 88
>PLN02914 hexokinase
Probab=50.62 E-value=9.9 Score=37.43 Aligned_cols=83 Identities=25% Similarity=0.183 Sum_probs=46.8
Q ss_pred CCCEEEEeccccceEEEEEe-CC-eEEEEEcCCCCcccceEEEecCCceeecHHHHHhHH---hCCCc-ch-hhhhhhhc
Q 021272 6 EGPAIGIDLGTTYSCVGVWQ-HD-RVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVA---MNPLN-TV-FDAKRLIG 78 (315)
Q Consensus 6 ~~~~iGID~GTtns~va~~~-~g-~~~vi~~~~~~~~~PS~v~~~~~~~~vG~~A~~~~~---~~~~~-~~-~~~KrliG 78 (315)
.+.+++||||.||..|+.+. .| ...++.....+..+|--+.....+-++..-|..... .+... .+ ..-+.-||
T Consensus 94 ~G~fLAlDlGGTNfRV~~V~L~g~~~~~~~~~~~~~~ip~~l~~gt~~eLFdfIA~~i~~fl~~~~~~~~~~~~~~l~LG 173 (490)
T PLN02914 94 KGLFYALDLGGTNFRVLRVQLGGKDERVIATEFEQVSIPQELMFGTSEELFDFIASGLANFVAKEGGKFHLPEGRKREIG 173 (490)
T ss_pred eeEEEEEecCCceEEEEEEEecCCCCceeeeeEEEecCChhhccCCHHHHHHHHHHHHHHHHHhccccccCCccccccce
Confidence 45799999999999999884 22 122333334455667666544445577776655432 11110 00 01134577
Q ss_pred CCCCChhhhc
Q 021272 79 RRFSDSSVQG 88 (315)
Q Consensus 79 ~~~~~~~v~~ 88 (315)
-+|+-|..|.
T Consensus 174 fTFSFP~~Q~ 183 (490)
T PLN02914 174 FTFSFPVKQT 183 (490)
T ss_pred eeEeeeeecC
Confidence 7777664444
No 89
>TIGR01312 XylB D-xylulose kinase. D-xylulose kinase (XylB) generally is found with xylose isomerase (XylA) and acts in xylose utilization.
Probab=49.56 E-value=9.1 Score=37.32 Aligned_cols=16 Identities=38% Similarity=0.432 Sum_probs=14.8
Q ss_pred EEEeccccceEEEEEe
Q 021272 10 IGIDLGTTYSCVGVWQ 25 (315)
Q Consensus 10 iGID~GTtns~va~~~ 25 (315)
+|||+|||+++++++.
T Consensus 1 lgIDiGtt~ik~~l~d 16 (481)
T TIGR01312 1 LGIDLGTSGVKALLVD 16 (481)
T ss_pred CceeecCcceEEEEEC
Confidence 6999999999999995
No 90
>KOG0103 consensus Molecular chaperones HSP105/HSP110/SSE1, HSP70 superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=49.41 E-value=47 Score=33.88 Aligned_cols=44 Identities=39% Similarity=0.677 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHHHHHHhcC---c-----ccc---HHHHHHHHHHHHHHHHHHHHH
Q 021272 234 DKKRIEDTIEEAMQWLDSN---Q-----LAE---ADEFEDKMKELESICNPIIAK 277 (315)
Q Consensus 234 e~~~l~~~l~e~e~wL~~~---~-----~a~---~~~~~~kl~~L~~~~~pi~~r 277 (315)
+.++....+.+.+.|++.. + +++ .+++.++.++|++.+.||..+
T Consensus 671 ~~~k~~~~~~~a~kw~~~~~~~q~~~~~t~~pv~~~e~~~~~~~l~~~~~~i~~~ 725 (727)
T KOG0103|consen 671 EMEKVLLEIEEAEKWLERKSNKQNKLSKTADPVPSSEIESEAKELNNTCSDIISK 725 (727)
T ss_pred HHHHHHHHHHHHHHHHhhhhhhhhcccCCCCCCchHHHHHhhhhhcccccccccc
Confidence 6777888889999999963 1 122 488899999999999988754
No 91
>TIGR01174 ftsA cell division protein FtsA. This bacterial cell division protein interacts with FtsZ, the bacterial homolog of tubulin. It is an ATP-binding protein and shows structural similarities to actin and heat shock cognate protein 70.
Probab=49.28 E-value=19 Score=33.84 Aligned_cols=25 Identities=32% Similarity=0.622 Sum_probs=18.9
Q ss_pred EEEEeccccceEEEEEe--C-CeEEEEE
Q 021272 9 AIGIDLGTTYSCVGVWQ--H-DRVEIIA 33 (315)
Q Consensus 9 ~iGID~GTtns~va~~~--~-g~~~vi~ 33 (315)
++|||+||++.++.+.. + +.+.++.
T Consensus 2 ~~~lDIGs~~ik~vv~~~~~~~~~~i~~ 29 (371)
T TIGR01174 2 IVGLDIGTSKICAIVAEVLEDGELNIIG 29 (371)
T ss_pred EEEEEeccceEEEEEEEEcCCCCEEEEE
Confidence 68999999999988763 2 4466654
No 92
>PRK00039 ruvC Holliday junction resolvase; Reviewed
Probab=47.55 E-value=17 Score=30.18 Aligned_cols=18 Identities=33% Similarity=0.477 Sum_probs=16.1
Q ss_pred CEEEEeccccceEEEEEe
Q 021272 8 PAIGIDLGTTYSCVGVWQ 25 (315)
Q Consensus 8 ~~iGID~GTtns~va~~~ 25 (315)
.++|||-|++++=.|++.
T Consensus 3 ~iLGIDPgl~~tG~avi~ 20 (164)
T PRK00039 3 RILGIDPGLRRTGYGVIE 20 (164)
T ss_pred EEEEEccccCceeEEEEE
Confidence 589999999999999874
No 93
>COG0816 Predicted endonuclease involved in recombination (possible Holliday junction resolvase in Mycoplasmas and B. subtilis) [DNA replication, recombination, and repair]
Probab=47.51 E-value=19 Score=29.15 Aligned_cols=21 Identities=24% Similarity=0.156 Sum_probs=17.6
Q ss_pred CCEEEEeccccceEEEEEeCC
Q 021272 7 GPAIGIDLGTTYSCVGVWQHD 27 (315)
Q Consensus 7 ~~~iGID~GTtns~va~~~~g 27 (315)
..++||||||-.+=||+....
T Consensus 2 ~~ilalD~G~KrIGvA~sd~~ 22 (141)
T COG0816 2 MRILALDVGTKRIGVAVSDIL 22 (141)
T ss_pred ceEEEEecCCceEEEEEecCC
Confidence 358999999999999987654
No 94
>KOG2517 consensus Ribulose kinase and related carbohydrate kinases [Carbohydrate transport and metabolism]
Probab=45.84 E-value=21 Score=35.27 Aligned_cols=20 Identities=40% Similarity=0.537 Sum_probs=18.0
Q ss_pred CCCEEEEeccccceEEEEEe
Q 021272 6 EGPAIGIDLGTTYSCVGVWQ 25 (315)
Q Consensus 6 ~~~~iGID~GTtns~va~~~ 25 (315)
...++|||.|||.+.+++++
T Consensus 5 ~~~~~gIDvGTtSaR~~v~~ 24 (516)
T KOG2517|consen 5 EPVVLGIDVGTTSARALVFN 24 (516)
T ss_pred cceEEEEEcCCCceEEEEEe
Confidence 46789999999999999997
No 95
>PLN02596 hexokinase-like
Probab=45.64 E-value=15 Score=36.29 Aligned_cols=57 Identities=16% Similarity=0.053 Sum_probs=34.1
Q ss_pred CCCCEEEEeccccceEEEEEe--CCeEEEEEcCCCCcccceEEEecCCceeecHHHHHh
Q 021272 5 GEGPAIGIDLGTTYSCVGVWQ--HDRVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQ 61 (315)
Q Consensus 5 ~~~~~iGID~GTtns~va~~~--~g~~~vi~~~~~~~~~PS~v~~~~~~~~vG~~A~~~ 61 (315)
-.+..+.||||.||..|+.+. ++...+......+..+|-.+.-...+.++..-|...
T Consensus 94 E~G~yLAlDlGGTNfRV~~V~L~g~~~~~~~~~~~~~~Ip~~l~~~t~~eLFd~IA~~i 152 (490)
T PLN02596 94 EKGLYYGLNLRGSNFLLLRARLGGKNEPISDLYREEISIPSNVLNGTSQELFDYIALEL 152 (490)
T ss_pred cceEEEEEeeCCceEEEEEEEEcCCCCceEEEEEEEecCChHhhcCCHHHHHHHHHHHH
Confidence 356789999999999999884 222122222233445565554434455666666543
No 96
>COG0849 ftsA Cell division ATPase FtsA [Cell division and chromosome partitioning]
Probab=44.85 E-value=34 Score=33.07 Aligned_cols=26 Identities=35% Similarity=0.484 Sum_probs=19.2
Q ss_pred CEEEEeccccceEEEEE--eCC-eEEEEE
Q 021272 8 PAIGIDLGTTYSCVGVW--QHD-RVEIIA 33 (315)
Q Consensus 8 ~~iGID~GTtns~va~~--~~g-~~~vi~ 33 (315)
.++|+|+||+..|+.+. .++ ...++-
T Consensus 7 ~iv~LDIGTskV~~lVge~~~~g~i~iig 35 (418)
T COG0849 7 LIVGLDIGTSKVKALVGELRPDGRLNIIG 35 (418)
T ss_pred eEEEEEccCcEEEEEEEEEcCCCeEEEEe
Confidence 79999999999886655 344 566554
No 97
>PLN02939 transferase, transferring glycosyl groups
Probab=44.77 E-value=1.7e+02 Score=31.61 Aligned_cols=73 Identities=19% Similarity=0.159 Sum_probs=43.9
Q ss_pred CCHHHHHHHHHHHHHhhhhchHHHHHHHHHHhHHHHHHHHHhhccc-ccccccCCHHHHHHHHHHHHHHHHHHh
Q 021272 178 LSKEEIEKMVQEAEKYKSEDEEHKKKVEAKNALENYAYNMRNTIKD-DQIGSKLSAADKKRIEDTIEEAMQWLD 250 (315)
Q Consensus 178 Ls~~ei~~~~~~~~~~~~~D~~~~~~~~~kn~LEs~iy~~r~~l~~-~~~~~~~~~~e~~~l~~~l~e~e~wL~ 250 (315)
+-+++++.++.++...+..|+........+.-|++++.++..++.. .+-...+.+-..+.+-+.++.++..|+
T Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (977)
T PLN02939 237 LLKDDIQFLKAELIEVAETEERVFKLEKERSLLDASLRELESKFIVAQEDVSKLSPLQYDCWWEKVENLQDLLD 310 (977)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccchhHHHHHHHHHHHHHHHH
Confidence 3456667777777777777777777777788888888888777642 111112233333344555555555554
No 98
>PF13881 Rad60-SLD_2: Ubiquitin-2 like Rad60 SUMO-like; PDB: 1SE9_A 1WGH_A 2GOW_A.
Probab=44.50 E-value=51 Score=25.52 Aligned_cols=52 Identities=27% Similarity=0.397 Sum_probs=33.5
Q ss_pred CCCcchhhhhhhhcCCCCChhhhcccCCCCccccCCCCCCCeEEEEecCccccccccccccccccc
Q 021272 65 NPLNTVFDAKRLIGRRFSDSSVQGDIKHWPFKVIPGAGDKPTIVVVYEGERARTRDNNLLGKFELS 130 (315)
Q Consensus 65 ~~~~~~~~~KrliG~~~~~~~v~~~~~~~~~~vv~~~~g~~~i~vvyqGe~~~~~~n~~Lg~~~l~ 130 (315)
.|..|++.+|..|=. .||-+....+...-.++++|.|. +..++..|+.+.+.
T Consensus 21 ~~~~TV~~lKe~i~~------------~WP~d~~~~p~s~~~lRLI~~Gr--iL~d~~tL~~~~~~ 72 (111)
T PF13881_consen 21 DPSTTVADLKERIWA------------EWPEDWEERPKSPSDLRLIYAGR--ILEDNKTLSDCRLP 72 (111)
T ss_dssp -TTSBHHHHHHHHHH------------SSSTTSSSTT-SGGGEEEEETTE--EE-SSSBTGGGT--
T ss_pred CccChHHHHHHHHHH------------HCccccccCCCChhhEEEEeCCe--ecCCcCcHHHhCCC
Confidence 345688999988733 34444333344566789999998 67799999888765
No 99
>PF15188 CCDC-167: Coiled-coil domain-containing protein 167
Probab=44.15 E-value=94 Score=22.86 Aligned_cols=35 Identities=26% Similarity=0.435 Sum_probs=25.6
Q ss_pred cccCCHHHHHHHHHHHHHHHHHHhcCccccHHHHHHHHHHHHH
Q 021272 227 GSKLSAADKKRIEDTIEEAMQWLDSNQLAEADEFEDKMKELES 269 (315)
Q Consensus 227 ~~~~~~~e~~~l~~~l~e~e~wL~~~~~a~~~~~~~kl~~L~~ 269 (315)
...+++++|..+.+.+..+..-|..+ +++|..|+.
T Consensus 30 ~~eLs~e~R~~lE~E~~~l~~~l~~~--------E~eL~~Lrk 64 (85)
T PF15188_consen 30 RRELSPEARRSLEKELNELKEKLENN--------EKELKLLRK 64 (85)
T ss_pred ccCCChHHHHHHHHHHHHHHHHhhcc--------HHHHHHHHH
Confidence 35688999999998888887766654 456666654
No 100
>PRK15080 ethanolamine utilization protein EutJ; Provisional
Probab=43.96 E-value=22 Score=31.97 Aligned_cols=20 Identities=30% Similarity=0.498 Sum_probs=16.5
Q ss_pred CCCEEEEeccccceEEEEEe
Q 021272 6 EGPAIGIDLGTTYSCVGVWQ 25 (315)
Q Consensus 6 ~~~~iGID~GTtns~va~~~ 25 (315)
...++|||+||+..++.+..
T Consensus 23 ~~~~~~iDiGSssi~~vv~~ 42 (267)
T PRK15080 23 SPLKVGVDLGTANIVLAVLD 42 (267)
T ss_pred CCEEEEEEccCceEEEEEEc
Confidence 56789999999999977653
No 101
>PRK13320 pantothenate kinase; Reviewed
Probab=43.84 E-value=29 Score=30.83 Aligned_cols=21 Identities=29% Similarity=0.468 Sum_probs=18.7
Q ss_pred CEEEEeccccceEEEEEeCCe
Q 021272 8 PAIGIDLGTTYSCVGVWQHDR 28 (315)
Q Consensus 8 ~~iGID~GTtns~va~~~~g~ 28 (315)
..+.||.|+|+++.+++.+++
T Consensus 3 M~L~iDiGNT~ik~~~~~~~~ 23 (244)
T PRK13320 3 MNLVIDIGNTTTKLAVFEGDE 23 (244)
T ss_pred eEEEEEeCCCcEEEEEEECCE
Confidence 489999999999999998764
No 102
>TIGR01175 pilM type IV pilus assembly protein PilM. This protein is required for the assembly of the type IV fimbria in Pseudomonas aeruginosa responsible for twitching motility, and for a similar pilus-like structure in Synechocystis. It is also found in species such as Deinococcus described as having natural transformation (for which a type IV pilus-like structure is proposed) but not fimbria.
Probab=43.69 E-value=32 Score=31.93 Aligned_cols=26 Identities=31% Similarity=0.442 Sum_probs=20.1
Q ss_pred CCEEEEeccccceEEEEEe--CCeEEEE
Q 021272 7 GPAIGIDLGTTYSCVGVWQ--HDRVEII 32 (315)
Q Consensus 7 ~~~iGID~GTtns~va~~~--~g~~~vi 32 (315)
+.++|||+|++..+++... ++.+.++
T Consensus 3 ~~~vgiDIg~~~Ik~v~~~~~~~~~~v~ 30 (348)
T TIGR01175 3 SLLVGIDIGSTSVKVAQLKRSGDRYKLE 30 (348)
T ss_pred CcEEEEEeccCeEEEEEEEecCCceEEE
Confidence 3689999999999998885 4555544
No 103
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=42.92 E-value=2.6e+02 Score=25.41 Aligned_cols=26 Identities=15% Similarity=0.235 Sum_probs=15.9
Q ss_pred hHHHHHHHHHHhHHHHHHHHH-hhccc
Q 021272 198 EEHKKKVEAKNALENYAYNMR-NTIKD 223 (315)
Q Consensus 198 ~~~~~~~~~kn~LEs~iy~~r-~~l~~ 223 (315)
..+.+|.....+|.+-+++|| +|+++
T Consensus 82 ~~l~dRetEI~eLksQL~RMrEDWIEE 108 (305)
T PF15290_consen 82 NRLHDRETEIDELKSQLARMREDWIEE 108 (305)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444556778888887 66654
No 104
>KOG1369 consensus Hexokinase [Carbohydrate transport and metabolism]
Probab=42.41 E-value=9.6 Score=37.19 Aligned_cols=80 Identities=20% Similarity=0.088 Sum_probs=43.9
Q ss_pred CCCCEEEEeccccceEEEEEe-CCeEEEEEcCCCCcccceEEEecCCceeecHHHHHh----HHhCCCcchhhhh-hhhc
Q 021272 5 GEGPAIGIDLGTTYSCVGVWQ-HDRVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQ----VAMNPLNTVFDAK-RLIG 78 (315)
Q Consensus 5 ~~~~~iGID~GTtns~va~~~-~g~~~vi~~~~~~~~~PS~v~~~~~~~~vG~~A~~~----~~~~~~~~~~~~K-rliG 78 (315)
..+.+++||||.||-.|+.+. +|.-..+........+|.-+..+....++..-|... ....+. +.+ +-+|
T Consensus 84 E~G~~lalDLGGTn~Rv~~v~L~g~~~~~~~~~~~~~ip~~~m~gt~~~Lfd~Ia~~l~~F~~~~~~~----~~~~l~lg 159 (474)
T KOG1369|consen 84 EKGKFLALDLGGTNFRVLLVKLGGGRTSVRMYNKIYAIPEEIMQGTGEELFDFIARCLADFLDKMGLK----GASKLPLG 159 (474)
T ss_pred cCCCEEEEecCCCceEEEEEEecCCcccceeeeeeEecCHHHHcCchHHHHHHHHHHHHHHHHHhccc----cccccccc
Confidence 457899999999999999873 222112222334555666665554444444444332 222332 222 5667
Q ss_pred CCCCChhhhc
Q 021272 79 RRFSDSSVQG 88 (315)
Q Consensus 79 ~~~~~~~v~~ 88 (315)
-+|+-|-.|.
T Consensus 160 FTFSfP~~Q~ 169 (474)
T KOG1369|consen 160 FTFSFPCRQT 169 (474)
T ss_pred eEEeeeeeec
Confidence 6666654433
No 105
>PF01548 DEDD_Tnp_IS110: Transposase; InterPro: IPR002525 Transposase proteins are necessary for efficient DNA transposition. This entry represents the N-terminal region of the pilin gene inverting protein (PIVML) and members of the IS111A/IS1328/IS1533 family of transposases [, ]. More information about these proteins can be found at Protein of the Month: Transposase [].; GO: 0003677 DNA binding, 0004803 transposase activity, 0006313 transposition, DNA-mediated
Probab=41.97 E-value=43 Score=26.55 Aligned_cols=20 Identities=25% Similarity=0.287 Sum_probs=17.0
Q ss_pred EEEEeccccceEEEEEeCCe
Q 021272 9 AIGIDLGTTYSCVGVWQHDR 28 (315)
Q Consensus 9 ~iGID~GTtns~va~~~~g~ 28 (315)
+||||+|-....||++.++.
T Consensus 1 ~vGiDv~k~~~~v~v~~~~~ 20 (144)
T PF01548_consen 1 FVGIDVSKDTHDVCVIDPNG 20 (144)
T ss_pred eEEEEcccCeEEEEEEcCCC
Confidence 68999999999999886554
No 106
>PHA03185 UL14 tegument protein; Provisional
Probab=41.96 E-value=2.1e+02 Score=24.59 Aligned_cols=40 Identities=18% Similarity=0.291 Sum_probs=25.4
Q ss_pred HHHhhhhchHHHHHHHHHHhHHHHHHHHHhhcccccccccC
Q 021272 190 AEKYKSEDEEHKKKVEAKNALENYAYNMRNTIKDDQIGSKL 230 (315)
Q Consensus 190 ~~~~~~~D~~~~~~~~~kn~LEs~iy~~r~~l~~~~~~~~~ 230 (315)
++.....-+.++.+.+....+..++...|..|. ..|...+
T Consensus 67 ve~VeQKar~Iq~rVEeQ~a~r~iL~~hRRyL~-pdf~e~l 106 (214)
T PHA03185 67 LEMLRQHAACVKIRVEEQAERRDFLIAHRRYLD-PALGERL 106 (214)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-hHHHHHH
Confidence 334444445555667777778888888888886 3454444
No 107
>PF07865 DUF1652: Protein of unknown function (DUF1652); InterPro: IPR012448 The proteins in this entry have not been characterised.
Probab=41.77 E-value=84 Score=22.12 Aligned_cols=49 Identities=20% Similarity=0.342 Sum_probs=33.9
Q ss_pred EEEEEEEecCCcEEEEeeecccccccceEEec--CCCCCCHHHHHHHHHHHH
Q 021272 142 ITVCFDIDANGILNVSAEDKTTGQKNKITITN--DKGRLSKEEIEKMVQEAE 191 (315)
Q Consensus 142 i~v~f~~d~nGil~V~a~~~~t~~~~~l~i~~--~~~~Ls~~ei~~~~~~~~ 191 (315)
..+.++++.+|.++|...+..+|... ++++. -..-.|..+|.+++.++.
T Consensus 15 l~C~ct~~~~~smtvrl~d~~sg~~~-l~vtGI~~~~l~s~rdI~~LI~eLr 65 (69)
T PF07865_consen 15 LRCECTIAPDGSMTVRLFDPASGRVE-LTVTGISTSALNSSRDIVRLIAELR 65 (69)
T ss_pred ceeEEEECCCCcEEEEEecCCCCcEE-EEEcCcCHHHcCCHHHHHHHHHHHH
Confidence 67899999999999999998888652 23222 112356777777766653
No 108
>PF00022 Actin: Actin; InterPro: IPR004000 Actin [, ] is a ubiquitous protein involved in the formation of filaments that are major components of the cytoskeleton. These filaments interact with myosin to produce a sliding effect, which is the basis of muscular contraction and many aspects of cell motility, including cytokinesis. Each actin protomer binds one molecule of ATP and has one high affinity site for either calcium or magnesium ions, as well as several low affinity sites. Actin exists as a monomer in low salt concentrations, but filaments form rapidly as salt concentration rises, with the consequent hydrolysis of ATP. Actin from many sources forms a tight complex with deoxyribonuclease (DNase I) although the significance of this is still unknown. The formation of this complex results in the inhibition of DNase I activity, and actin loses its ability to polymerise. It has been shown that an ATPase domain of actin shares similarity with ATPase domains of hexokinase and hsp70 proteins [, ]. In vertebrates there are three groups of actin isoforms: alpha, beta and gamma. The alpha actins are found in muscle tissues and are a major constituent of the contractile apparatus. The beta and gamma actins co-exists in most cell types as components of the cytoskeleton and as mediators of internal cell motility. In plants there are many isoforms which are probably involved in a variety of functions such as cytoplasmic streaming, cell shape determination, tip growth, graviperception, cell wall deposition, etc. Recently some divergent actin-like proteins have been identified in several species. These proteins include centractin (actin-RPV) from mammals, fungi yeast ACT5, Neurospora crassa ro-4) and Pneumocystis carinii, which seems to be a component of a multi-subunit centrosomal complex involved in microtubule based vesicle motility (this subfamily is known as ARP1); ARP2 subfamily, which includes chicken ACTL, Saccharomyces cerevisiae ACT2, Drosophila melanogaster 14D and Caenorhabditis elegans actC; ARP3 subfamily, which includes actin 2 from mammals, Drosophila 66B, yeast ACT4 and Schizosaccharomyces pombe act2; and ARP4 subfamily, which includes yeast ACT3 and Drosophila 13E.; PDB: 2OAN_B 1HLU_A 2BTF_A 3UB5_A 3U4L_A 4EFH_A 1YVN_A 1YAG_A 1D4X_A 1MDU_B ....
Probab=41.52 E-value=37 Score=32.01 Aligned_cols=47 Identities=26% Similarity=0.337 Sum_probs=33.7
Q ss_pred CCCEEEEeccccceEEEEEeCCeEEEEEcCCCCcccceEEEecCC-----ceeecHHHHH
Q 021272 6 EGPAIGIDLGTTYSCVGVWQHDRVEIIANDQGNRTTPSYVAFTDT-----ERLIGDAAKN 60 (315)
Q Consensus 6 ~~~~iGID~GTtns~va~~~~g~~~vi~~~~~~~~~PS~v~~~~~-----~~~vG~~A~~ 60 (315)
...+|-||+|+.++.+++.....|.++ +||++..... ..++|..+..
T Consensus 3 ~~~~vViD~Gs~~~k~G~age~~P~~v--------~ps~~~~~~~~~~~~~~~~g~~~~~ 54 (393)
T PF00022_consen 3 ENKPVVIDNGSSTIKAGFAGEDLPRVV--------IPSVVGRPRDKNSSNDYYVGDEALS 54 (393)
T ss_dssp SSSEEEEEECSSEEEEEETTSSS-SEE--------EESEEEEESSSSSSSSCEETHHHHH
T ss_pred CCCEEEEECCCceEEEEECCCCCCCCc--------CCCccccccccccceeEEeeccccc
Confidence 456899999999999998755555443 4788876543 3578988544
No 109
>PF14574 DUF4445: Domain of unknown function (DUF4445); PDB: 3ZYY_X.
Probab=41.39 E-value=36 Score=32.76 Aligned_cols=17 Identities=29% Similarity=0.397 Sum_probs=14.0
Q ss_pred EEEEeccccceEEEEEe
Q 021272 9 AIGIDLGTTYSCVGVWQ 25 (315)
Q Consensus 9 ~iGID~GTtns~va~~~ 25 (315)
-++||+|||...++.++
T Consensus 3 GiAvDiGTTti~~~L~d 19 (412)
T PF14574_consen 3 GIAVDIGTTTIAAYLVD 19 (412)
T ss_dssp EEEEEE-SSEEEEEEEE
T ss_pred EEEEEcchhheeeEEEE
Confidence 57999999999988885
No 110
>PF04848 Pox_A22: Poxvirus A22 protein; InterPro: IPR006932 This family, representing the Poxvirus A22 protein, is a Holliday junction resolvase, it specifically cleaves and resolves four-way DNA Holliday junctions into linear duplex products. ; GO: 0000287 magnesium ion binding, 0000400 four-way junction DNA binding, 0016788 hydrolase activity, acting on ester bonds, 0006281 DNA repair, 0006310 DNA recombination
Probab=41.27 E-value=44 Score=27.18 Aligned_cols=18 Identities=17% Similarity=0.267 Sum_probs=16.2
Q ss_pred CEEEEeccccceEEEEEe
Q 021272 8 PAIGIDLGTTYSCVGVWQ 25 (315)
Q Consensus 8 ~~iGID~GTtns~va~~~ 25 (315)
.+++||.|+=|...|++.
T Consensus 2 ii~sIDiGikNlA~~iie 19 (143)
T PF04848_consen 2 IILSIDIGIKNLAYCIIE 19 (143)
T ss_pred eEEEEecCCCceeEEEEE
Confidence 489999999999999886
No 111
>PF08006 DUF1700: Protein of unknown function (DUF1700); InterPro: IPR012963 This family contains many hypothetical bacterial proteins and two putative membrane proteins (Q6GFD0 from SWISSPROT and Q6G806 from SWISSPROT).
Probab=40.53 E-value=86 Score=26.21 Aligned_cols=34 Identities=15% Similarity=0.265 Sum_probs=14.4
Q ss_pred HHHHHHHHhcC--ccccHHHHHHHHHHHHHHHHHHH
Q 021272 242 IEEAMQWLDSN--QLAEADEFEDKMKELESICNPII 275 (315)
Q Consensus 242 l~e~e~wL~~~--~~a~~~~~~~kl~~L~~~~~pi~ 275 (315)
++.+++++++. +-.+.+++-+++-.-+.++..+.
T Consensus 26 l~~Y~e~f~d~~~~G~sEeeii~~LG~P~~iA~~i~ 61 (181)
T PF08006_consen 26 LEYYEEYFDDAGEEGKSEEEIIAELGSPKEIAREIL 61 (181)
T ss_pred HHHHHHHHHHhhhCCCCHHHHHHHcCCHHHHHHHHH
Confidence 34555555542 11234444444444444444333
No 112
>TIGR00671 baf pantothenate kinase, type III. This model describes a family of proteins found in a single copy in at least ten different early completed bacterial genomes. The only characterized member of the family is Bvg accessory factor (Baf), a protein required, in addition to the regulatory operon bvgAS, for heterologous transcription of the Bordetella pertussis toxin operon (ptx) in E. coli.
Probab=39.14 E-value=33 Score=30.42 Aligned_cols=19 Identities=21% Similarity=0.307 Sum_probs=17.2
Q ss_pred EEEeccccceEEEEEeCCe
Q 021272 10 IGIDLGTTYSCVGVWQHDR 28 (315)
Q Consensus 10 iGID~GTtns~va~~~~g~ 28 (315)
+.||.|+||++++++.+++
T Consensus 2 L~iDiGNT~i~~g~~~~~~ 20 (243)
T TIGR00671 2 LLIDVGNTRIVFALNSGNK 20 (243)
T ss_pred EEEEECCCcEEEEEEECCE
Confidence 6799999999999998775
No 113
>COG1521 Pantothenate kinase type III (Bvg accessory factor family protein) [Transcription]
Probab=38.87 E-value=33 Score=30.70 Aligned_cols=21 Identities=24% Similarity=0.441 Sum_probs=18.6
Q ss_pred EEEEeccccceEEEEEeCCeE
Q 021272 9 AIGIDLGTTYSCVGVWQHDRV 29 (315)
Q Consensus 9 ~iGID~GTtns~va~~~~g~~ 29 (315)
.+.||.|+|++..|++++++.
T Consensus 2 ~L~iDiGNT~~~~a~~~~~~~ 22 (251)
T COG1521 2 LLLIDIGNTRIVFALYEGGKV 22 (251)
T ss_pred eEEEEeCCCeEEEEEecCCeE
Confidence 689999999999999987654
No 114
>TIGR01319 glmL_fam conserved hypothetical protein. This small family includes, so far, an uncharacterized protein from E. coli O157:H7 and GlmL from Clostridium tetanomorphum and Clostridium cochlearium. GlmL is located between the genes for the two subunits, epsilon (GlmE) and sigma (GlmS), of the coenzyme-B12-dependent glutamate mutase (methylaspartate mutase), the first enzyme in a pathway of glutamate fermentation. Members shows significant sequence similarity to the hydantoinase branch of the hydantoinase/oxoprolinase family (pfam01968).
Probab=38.62 E-value=18 Score=35.26 Aligned_cols=38 Identities=21% Similarity=0.340 Sum_probs=23.3
Q ss_pred EeccccceEEEEEeCCeEEEEEcCCCCcccceEEEecCCceeec
Q 021272 12 IDLGTTYSCVGVWQHDRVEIIANDQGNRTTPSYVAFTDTERLIG 55 (315)
Q Consensus 12 ID~GTtns~va~~~~g~~~vi~~~~~~~~~PS~v~~~~~~~~vG 55 (315)
+|||+|+++++.+.-...+++.. ++-.+|+.+. .+.+|
T Consensus 1 ~DiGST~Tk~~a~~~~~~~~~~~--~~~~tpTt~~----dv~~G 38 (463)
T TIGR01319 1 LDFGSTWTKAAAFDIEGDAILAT--AHDITPIESD----HLAGG 38 (463)
T ss_pred CCccccceEEEEEecCCCcEEEE--EeccCccchh----hhhcc
Confidence 69999999999995333333322 2444566662 35555
No 115
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=38.48 E-value=3.9e+02 Score=26.91 Aligned_cols=90 Identities=17% Similarity=0.365 Sum_probs=47.9
Q ss_pred HHHHHHHHHHHHHhhhhchHHHHHHHHHHhHHHHHHHHHhhccc--ccccccCCH--HHHHHHHHHHHHHHHHHhcCccc
Q 021272 180 KEEIEKMVQEAEKYKSEDEEHKKKVEAKNALENYAYNMRNTIKD--DQIGSKLSA--ADKKRIEDTIEEAMQWLDSNQLA 255 (315)
Q Consensus 180 ~~ei~~~~~~~~~~~~~D~~~~~~~~~kn~LEs~iy~~r~~l~~--~~~~~~~~~--~e~~~l~~~l~e~e~wL~~~~~a 255 (315)
.+++..+...+..+...+..-+... ..|......+|..+.. ..|...++. ..-..+.....++.+|...|+-.
T Consensus 114 e~~i~~i~~~l~~L~~~e~~nr~~i---~~l~~~y~~lrk~ll~~~~~~G~a~~~Le~~L~~ie~~F~~f~~lt~~GD~~ 190 (560)
T PF06160_consen 114 EEDIKEILDELDELLESEEKNREEI---EELKEKYRELRKELLAHSFSYGPAIEELEKQLENIEEEFSEFEELTENGDYL 190 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHhhhhhchhHHHHHHHHHHHHHHHHHHHHHHHCCCHH
Confidence 4555666666666655554433322 2344444555555543 234444433 45577788888888888886422
Q ss_pred c----HHHHHHHHHHHHHHHH
Q 021272 256 E----ADEFEDKMKELESICN 272 (315)
Q Consensus 256 ~----~~~~~~kl~~L~~~~~ 272 (315)
. ...++..+..|+..+.
T Consensus 191 ~A~eil~~l~~~~~~l~~~~e 211 (560)
T PF06160_consen 191 EAREILEKLKEETDELEEIME 211 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 2 3334444444544433
No 116
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=36.88 E-value=3.9e+02 Score=27.15 Aligned_cols=60 Identities=18% Similarity=0.350 Sum_probs=31.5
Q ss_pred HHHHHHHhHHHHHHHHHhhcccccccccCCHHHHHHHHHHHHHHHHHHhcCccccHHHHHHHHHHHHHH
Q 021272 202 KKVEAKNALENYAYNMRNTIKDDQIGSKLSAADKKRIEDTIEEAMQWLDSNQLAEADEFEDKMKELESI 270 (315)
Q Consensus 202 ~~~~~kn~LEs~iy~~r~~l~~~~~~~~~~~~e~~~l~~~l~e~e~wL~~~~~a~~~~~~~kl~~L~~~ 270 (315)
+...++++|+++...++..... .-+...+...+..++.-|.+. ....++++.++..|+++
T Consensus 451 eie~L~~~l~~~~r~~~~~~~~--------~rei~~~~~~I~~L~~~L~e~-~~~ve~L~~~l~~l~k~ 510 (652)
T COG2433 451 EIEKLESELERFRREVRDKVRK--------DREIRARDRRIERLEKELEEK-KKRVEELERKLAELRKM 510 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHhh--------hHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH
Confidence 3344555566555555533321 223344455555555555552 22567777777777744
No 117
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=36.78 E-value=1.1e+02 Score=29.84 Aligned_cols=22 Identities=27% Similarity=0.407 Sum_probs=15.7
Q ss_pred cHHHHHHHHHHHHHHHHHHHHH
Q 021272 256 EADEFEDKMKELESICNPIIAK 277 (315)
Q Consensus 256 ~~~~~~~kl~~L~~~~~pi~~r 277 (315)
+..+|..||+.++++-+--..|
T Consensus 711 d~key~~klek~eki~eir~qr 732 (840)
T KOG2003|consen 711 DAKEYADKLEKAEKIKEIREQR 732 (840)
T ss_pred hHHHHHHHHHHHHHHHHHHHHh
Confidence 5778888888888775544455
No 118
>TIGR00250 RNAse_H_YqgF RNAse H-fold protein YqgF. This protein family, which exhibits an RNAse H fold in crystal structure, has been proposed as a putative Holliday junction resolvase, an alternate to RuvC.
Probab=36.75 E-value=24 Score=28.09 Aligned_cols=17 Identities=29% Similarity=0.374 Sum_probs=14.7
Q ss_pred EEEeccccceEEEEEeC
Q 021272 10 IGIDLGTTYSCVGVWQH 26 (315)
Q Consensus 10 iGID~GTtns~va~~~~ 26 (315)
+|||||+..+=+|+...
T Consensus 1 laiD~G~kriGvA~~d~ 17 (130)
T TIGR00250 1 LGLDFGTKSIGVAGQDI 17 (130)
T ss_pred CeEccCCCeEEEEEECC
Confidence 59999999999997754
No 119
>COG2410 Predicted nuclease (RNAse H fold) [General function prediction only]
Probab=36.64 E-value=78 Score=26.47 Aligned_cols=26 Identities=38% Similarity=0.546 Sum_probs=22.1
Q ss_pred EEEEeccccc-eEEEEEeCCeEEEEEc
Q 021272 9 AIGIDLGTTY-SCVGVWQHDRVEIIAN 34 (315)
Q Consensus 9 ~iGID~GTtn-s~va~~~~g~~~vi~~ 34 (315)
+.|||+|--. +++|++.+++.++|..
T Consensus 3 y~GIDla~k~~tavavl~~~~~~~i~~ 29 (178)
T COG2410 3 YAGIDLAVKRSTAVAVLIEGRIEIISA 29 (178)
T ss_pred ccccccccCCCceEEEEECCEEEEEEc
Confidence 7899998755 4789999999999984
No 120
>PTZ00107 hexokinase; Provisional
Probab=36.01 E-value=28 Score=34.09 Aligned_cols=21 Identities=24% Similarity=0.121 Sum_probs=18.2
Q ss_pred CCCCEEEEeccccceEEEEEe
Q 021272 5 GEGPAIGIDLGTTYSCVGVWQ 25 (315)
Q Consensus 5 ~~~~~iGID~GTtns~va~~~ 25 (315)
-.+.++.||||.||..|+.+.
T Consensus 72 E~G~fLAlDlGGTN~RV~~V~ 92 (464)
T PTZ00107 72 EKGVYYAIDFGGTNFRAVRVS 92 (464)
T ss_pred ccceEEEEecCCceEEEEEEE
Confidence 346799999999999999884
No 121
>PF02970 TBCA: Tubulin binding cofactor A; InterPro: IPR004226 The folding pathway of tubulins includes highly specific interactions with a series of cofactors (A, B, C, D and E) after they are released from the eukaryotic chaperonin CCT. Cofactors A and D capture and stabilise tubulin in a quasi-native conformation. Cofactor E binds to the cofactor D-tubulin complex, and interaction with cofactor C then causes the release of tubulin poypeptides in the native state. This family is the tubulin-specific chaperone A.; GO: 0051082 unfolded protein binding, 0007021 tubulin complex assembly, 0005874 microtubule; PDB: 3MXZ_A 1QSD_A 1H7C_A.
Probab=35.92 E-value=1.8e+02 Score=21.49 Aligned_cols=32 Identities=22% Similarity=0.448 Sum_probs=21.8
Q ss_pred CCHHHHHHHHHHHHHHHHHHhcC-ccccHHHHH
Q 021272 230 LSAADKKRIEDTIEEAMQWLDSN-QLAEADEFE 261 (315)
Q Consensus 230 ~~~~e~~~l~~~l~e~e~wL~~~-~~a~~~~~~ 261 (315)
+-|+-+..|...+.++++||..+ ...+.++++
T Consensus 56 mipd~~~RL~~a~~~L~~~l~~~~~~ee~~~ak 88 (90)
T PF02970_consen 56 MIPDCQQRLEKAVEDLEEFLEEEEGLEELEEAK 88 (90)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCCCCSHHHH
T ss_pred HhHHHHHHHHHHHHHHHHHHHHCcCchhHHHHh
Confidence 33667788888889999998873 334444443
No 122
>PF15456 Uds1: Up-regulated During Septation
Probab=35.57 E-value=2.2e+02 Score=22.47 Aligned_cols=20 Identities=35% Similarity=0.404 Sum_probs=16.6
Q ss_pred CCCHHHHHHHHHHHHHhhhh
Q 021272 177 RLSKEEIEKMVQEAEKYKSE 196 (315)
Q Consensus 177 ~Ls~~ei~~~~~~~~~~~~~ 196 (315)
-|+.+|++...+++..+...
T Consensus 18 iLs~eEVe~LKkEl~~L~~R 37 (124)
T PF15456_consen 18 ILSFEEVEELKKELRSLDSR 37 (124)
T ss_pred ccCHHHHHHHHHHHHHHHHH
Confidence 49999999999988877644
No 123
>PRK13881 conjugal transfer protein TrbI; Provisional
Probab=34.66 E-value=2e+02 Score=28.05 Aligned_cols=41 Identities=10% Similarity=0.238 Sum_probs=30.7
Q ss_pred CCHHHHHHHHHHHHHHHHHHhcC-ccccHHHHHHHHHHHHHH
Q 021272 230 LSAADKKRIEDTIEEAMQWLDSN-QLAEADEFEDKMKELESI 270 (315)
Q Consensus 230 ~~~~e~~~l~~~l~e~e~wL~~~-~~a~~~~~~~kl~~L~~~ 270 (315)
..+.-|++....|.+.+..++.. ..-....|+++|..|+..
T Consensus 176 ~~~~~~~e~la~~a~~~~~~~~~~~~d~~~~y~~~l~~~~~~ 217 (472)
T PRK13881 176 GTPQTRDEMLARIAAVRQQIDAQRSNDPTAAYQARLAQLRGM 217 (472)
T ss_pred CCCCchHHHHHHHHHHHHHHhhhhccCcHHHHHHHHHHHHhc
Confidence 44567888888899998888873 222577899999888654
No 124
>PRK12408 glucokinase; Provisional
Probab=33.91 E-value=30 Score=32.23 Aligned_cols=18 Identities=22% Similarity=0.200 Sum_probs=16.6
Q ss_pred CEEEEeccccceEEEEEe
Q 021272 8 PAIGIDLGTTYSCVGVWQ 25 (315)
Q Consensus 8 ~~iGID~GTtns~va~~~ 25 (315)
.++|||+|.||+.++++.
T Consensus 17 ~~L~~DIGGT~i~~al~d 34 (336)
T PRK12408 17 SFVAADVGGTHVRVALVC 34 (336)
T ss_pred cEEEEEcChhhhheeEEe
Confidence 489999999999999996
No 125
>COG4819 EutA Ethanolamine utilization protein, possible chaperonin protecting lyase from inhibition [Amino acid transport and metabolism]
Probab=33.87 E-value=64 Score=30.21 Aligned_cols=23 Identities=9% Similarity=0.420 Sum_probs=17.7
Q ss_pred CCHHHHHHHHHHHHHHHHHHhcC
Q 021272 230 LSAADKKRIEDTIEEAMQWLDSN 252 (315)
Q Consensus 230 ~~~~e~~~l~~~l~e~e~wL~~~ 252 (315)
...+|-..+.+.+++...|++-+
T Consensus 347 ~kqde~~~~~e~~~qkL~wf~~d 369 (473)
T COG4819 347 IKQDETFDLVEAWQQKLIWFDLD 369 (473)
T ss_pred CccchhhHHHHHHHHHHhhhccC
Confidence 34455568999999999999864
No 126
>PTZ00288 glucokinase 1; Provisional
Probab=33.74 E-value=39 Score=32.47 Aligned_cols=22 Identities=27% Similarity=0.336 Sum_probs=18.9
Q ss_pred CCCCEEEEeccccceEEEEEeC
Q 021272 5 GEGPAIGIDLGTTYSCVGVWQH 26 (315)
Q Consensus 5 ~~~~~iGID~GTtns~va~~~~ 26 (315)
...+++|+|.|-|||.+++++.
T Consensus 24 ~~~~~~~~DiGgt~~R~~~~~~ 45 (405)
T PTZ00288 24 SGPIFVGCDVGGTNARVGFARE 45 (405)
T ss_pred cCCeEEEEEecCCceEEEEEec
Confidence 3457999999999999999964
No 127
>PF08955 BofC_C: BofC C-terminal domain; InterPro: IPR015050 The C-terminal domain of the bacterial protein, bypass of forespore C (BofC), contains a three-stranded beta-sheet and three alpha-helices. The exact function is unknown []. ; PDB: 2BW2_A.
Probab=33.62 E-value=1.7e+02 Score=21.01 Aligned_cols=44 Identities=14% Similarity=0.226 Sum_probs=19.0
Q ss_pred EEEEEEecCCcEEEEeeecccccccceEEecCCCCCCHHHHHHH
Q 021272 143 TVCFDIDANGILNVSAEDKTTGQKNKITITNDKGRLSKEEIEKM 186 (315)
Q Consensus 143 ~v~f~~d~nGil~V~a~~~~t~~~~~l~i~~~~~~Ls~~ei~~~ 186 (315)
..-|.++.+|.|++-.=....++..+-.+.-+...|.+.+++++
T Consensus 10 ngYfGi~~dG~LslF~G~P~~~~vI~sFfqIdv~~Les~~~~~L 53 (75)
T PF08955_consen 10 NGYFGISEDGVLSLFEGPPGEEKVIQSFFQIDVEKLESSDHDQL 53 (75)
T ss_dssp ---EEEETTTEEEEBSSS-STT-BS-------TTTS-HHHHHHH
T ss_pred CeeEEEcCCCcEEEEecCCCCCchheeeeecCHHHcCHhHHHHH
Confidence 45688899999888543333332222222233345766655444
No 128
>PRK13324 pantothenate kinase; Reviewed
Probab=33.46 E-value=49 Score=29.67 Aligned_cols=20 Identities=30% Similarity=0.620 Sum_probs=17.7
Q ss_pred EEEEeccccceEEEEEeCCe
Q 021272 9 AIGIDLGTTYSCVGVWQHDR 28 (315)
Q Consensus 9 ~iGID~GTtns~va~~~~g~ 28 (315)
++.||.|+||++.+++.+++
T Consensus 2 iL~iDiGNT~ik~gl~~~~~ 21 (258)
T PRK13324 2 LLVMDMGNSHIHIGVFDGDR 21 (258)
T ss_pred EEEEEeCCCceEEEEEECCE
Confidence 68999999999999998654
No 129
>PF03309 Pan_kinase: Type III pantothenate kinase; InterPro: IPR004619 Pantothenate kinase (PanK or CoaA) catalyses the first step of the universal five step coenzyme A (CoA) biosynthesis pathway. CoA is a ubiquitous and essential cofactor in all living organsims. Pantothenate kinase catalyses the first and rate limiting step in the CoA biosynthetic pathway, which involves transferring a phosphoryl group from ATP to pantothenate, also known as vitamin B5. Three distinct types of pantothenate kinase enzymes have been identified: type I PanK enzymes are typified by the E. coli CoaA protein, type II enzymes are primarily found in eukaryotic organisms whilst type III enzymes have a wider phylogenic distribution and are not feedback inhibited by CoA []. This entry represents the type III pantothenate kinase family, such as that found in Helicobacter pylori. PanK III enzymes have a much wider phylogenic distribution than PanK I, and differs significantly in biochemical activity. PanK III enzymes are are not feedback inhibited by CoA concentration (which is also the case for PanK II enzymes), and PanK III enzymes have an unusually high Km for ATP []. ; GO: 0045893 positive regulation of transcription, DNA-dependent; PDB: 2GTD_E 3BF1_F 3BEX_D 3BF3_F 2NRH_B 2H3G_X 3DJC_J 2F9T_A 2F9W_A.
Probab=32.99 E-value=52 Score=28.20 Aligned_cols=21 Identities=24% Similarity=0.387 Sum_probs=17.1
Q ss_pred EEEEeccccceEEEEEeCCeE
Q 021272 9 AIGIDLGTTYSCVGVWQHDRV 29 (315)
Q Consensus 9 ~iGID~GTtns~va~~~~g~~ 29 (315)
++-||.|+|+++++++.+...
T Consensus 1 ~L~iDiGNT~ik~~~~~~~~~ 21 (206)
T PF03309_consen 1 ILLIDIGNTRIKWALFDGDKL 21 (206)
T ss_dssp EEEEEE-SSEEEEEEEETTEE
T ss_pred CEEEEECCCeEEEEEEECCEE
Confidence 467999999999999987754
No 130
>PHA02557 22 prohead core protein; Provisional
Probab=32.81 E-value=3.6e+02 Score=24.32 Aligned_cols=87 Identities=17% Similarity=0.329 Sum_probs=51.4
Q ss_pred CCHHHHHHHHHHHHHhhhhchHHHHHHHHHHhHHHHHHHHH-hhcccccccccCCHHHHHHHHHHHHHHHHHHhcCcccc
Q 021272 178 LSKEEIEKMVQEAEKYKSEDEEHKKKVEAKNALENYAYNMR-NTIKDDQIGSKLSAADKKRIEDTIEEAMQWLDSNQLAE 256 (315)
Q Consensus 178 Ls~~ei~~~~~~~~~~~~~D~~~~~~~~~kn~LEs~iy~~r-~~l~~~~~~~~~~~~e~~~l~~~l~e~e~wL~~~~~a~ 256 (315)
+..+.++-.-....++.....+.....+..++|+.+|..+. ..+- .+...-++...++++..++.-++-
T Consensus 135 vpee~vdvV~em~~~L~E~e~~~~~l~~en~~l~e~i~~~~r~~i~-~e~t~gLtdsQkeKv~~L~Egvef--------- 204 (271)
T PHA02557 135 VPEEKVDVVAEMEEELDEMEEELNELFEENVALEEYINEVKREVIL-SEVTKDLTESQKEKVASLAEGLEF--------- 204 (271)
T ss_pred CcHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHcchhHHHHHHHHHHHhccch---------
Confidence 44444333322333344334455555666677777776544 3332 356777888889888877754432
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 021272 257 ADEFEDKMKELESICNPI 274 (315)
Q Consensus 257 ~~~~~~kl~~L~~~~~pi 274 (315)
-+.|..|+..|.....+.
T Consensus 205 ~e~F~~kl~~i~E~v~~~ 222 (271)
T PHA02557 205 SETFSKKLTAIVEMVFKS 222 (271)
T ss_pred hhHHHHHHHHHHHHHHhc
Confidence 367888888887766543
No 131
>TIGR00555 panK_eukar pantothenate kinase, eukaryotic/staphyloccocal type. This model describes a eukaryotic form of pantothenate kinase, characterized from the fungus Aspergillus nidulans and with similar forms known in several other eukaryotes. It also includes forms from several Gram-positive bacteria suggested to have originated from the eukaryotic form by lateral transfer. It differs in a number of biochemical properties (such as inhibition by acetyl-CoA) from most bacterial CoaA and lacks sequence similarity. This enzyme is the key regulatory step in the biosynthesis of coenzyme A (CoA).
Probab=32.76 E-value=59 Score=29.58 Aligned_cols=21 Identities=38% Similarity=0.363 Sum_probs=17.7
Q ss_pred EEEEeccccceEEEEE-eCCeE
Q 021272 9 AIGIDLGTTYSCVGVW-QHDRV 29 (315)
Q Consensus 9 ~iGID~GTtns~va~~-~~g~~ 29 (315)
.+|||.|.|.+++++. .+++.
T Consensus 2 ~iGiDiGgT~~Kiv~~~~~~~~ 23 (279)
T TIGR00555 2 RIGIDIGGTLIKVVYEEPKGRR 23 (279)
T ss_pred eEEEEeCcceEEEEEEcCCCcE
Confidence 6999999999999998 55544
No 132
>PTZ00419 valyl-tRNA synthetase-like protein; Provisional
Probab=32.73 E-value=1.9e+02 Score=31.34 Aligned_cols=55 Identities=20% Similarity=0.242 Sum_probs=35.2
Q ss_pred HHhHHHHHHHHHhhcccccccccCCHHHHHHHHHHHHHHHHHHhcCccccHHHHHHHHHHHHH
Q 021272 207 KNALENYAYNMRNTIKDDQIGSKLSAADKKRIEDTIEEAMQWLDSNQLAEADEFEDKMKELES 269 (315)
Q Consensus 207 kn~LEs~iy~~r~~l~~~~~~~~~~~~e~~~l~~~l~e~e~wL~~~~~a~~~~~~~kl~~L~~ 269 (315)
...++.-+...+..|.++.|....+++..++-++.+.+++. ..+.+++.+..|++
T Consensus 938 l~kl~~ei~~~~~kL~N~~F~~kAp~~vve~e~~kl~~~~~--------~l~~l~~~l~~l~~ 992 (995)
T PTZ00419 938 LAKLQKSLESYLKKISIPNYEDKVPEDVRKLNDEKIDELNE--------EIKQLEQAIEELKS 992 (995)
T ss_pred HHHHHHHHHHHHHHhCCchhhhcCCHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHH
Confidence 34555666677777877778888888777777777765555 33444555555543
No 133
>PF05957 DUF883: Bacterial protein of unknown function (DUF883); InterPro: IPR010279 This family consists of several bacterial proteins of unknown function that include the Escherichia coli genes for ElaB, YgaM and YqjD.
Probab=32.61 E-value=2e+02 Score=21.10 Aligned_cols=66 Identities=18% Similarity=0.308 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHhhhh--chHHHHHHHHHHhHHHHHHHHHhhcccccccccCCHHHHHHHHHHHHHHHHHHhcC
Q 021272 181 EEIEKMVQEAEKYKSE--DEEHKKKVEAKNALENYAYNMRNTIKDDQIGSKLSAADKKRIEDTIEEAMQWLDSN 252 (315)
Q Consensus 181 ~ei~~~~~~~~~~~~~--D~~~~~~~~~kn~LEs~iy~~r~~l~~~~~~~~~~~~e~~~l~~~l~e~e~wL~~~ 252 (315)
++++.++.+++.+... |.-.....+++..+++.+...|+.+.+ ....-+++..+....+++++.++
T Consensus 5 ~~l~~l~~d~~~l~~~~~~~~~~~~~~~r~~~~~~~~~a~~~~~~------~~~~~~~~~~~~~~~~~~~V~e~ 72 (94)
T PF05957_consen 5 AELEQLRADLEDLARSAADLAGEKADEARDRAEEALDDARDRAED------AADQAREQAREAAEQTEDYVREN 72 (94)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHC
Confidence 3455555555444321 222223344455555555555555531 11223445555555555555554
No 134
>COG0497 RecN ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=32.30 E-value=2.7e+02 Score=28.01 Aligned_cols=36 Identities=25% Similarity=0.439 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHhc-C-ccccHHHHHHHHHHHHHHH
Q 021272 236 KRIEDTIEEAMQWLDS-N-QLAEADEFEDKMKELESIC 271 (315)
Q Consensus 236 ~~l~~~l~e~e~wL~~-~-~~a~~~~~~~kl~~L~~~~ 271 (315)
..+.+...++...+++ . +....+++.+|+..|+.++
T Consensus 276 ~~l~ea~~el~~~~~~le~Dp~~L~~ve~Rl~~L~~l~ 313 (557)
T COG0497 276 YELEEASEELRAYLDELEFDPNRLEEVEERLFALKSLA 313 (557)
T ss_pred HHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHH
Confidence 3344444444444544 1 3344677777777777653
No 135
>PF01385 OrfB_IS605: Probable transposase; InterPro: IPR001959 This entry represents a conserved region of a probable transposase family, which is found in a number of uncharacterised bacterial proteins. A novel insertion sequence (IS)-like element of the Bacillus PS3 (Thermophilic bacterium PS-3) that promotes expression of the alanine carrier protein-encoding gene belongs to this entry, including IS891 [], IS1136 [], and IS1341 []. More information about these proteins can be found at Protein of the Month: Transposase [].
Probab=31.51 E-value=27 Score=29.82 Aligned_cols=24 Identities=17% Similarity=0.210 Sum_probs=18.1
Q ss_pred CCCCEEEEeccccceEEEEEeCCe
Q 021272 5 GEGPAIGIDLGTTYSCVGVWQHDR 28 (315)
Q Consensus 5 ~~~~~iGID~GTtns~va~~~~g~ 28 (315)
....++|||+|..+..+++...|.
T Consensus 122 ~~~~~vgVDlGi~~~a~~~~~~~~ 145 (227)
T PF01385_consen 122 DTEKVVGVDLGIKNLATVSSGDGT 145 (227)
T ss_pred ccceeeeeccccceeecccccccc
Confidence 356799999999998876655443
No 136
>PLN02943 aminoacyl-tRNA ligase
Probab=30.68 E-value=2.1e+02 Score=30.98 Aligned_cols=41 Identities=7% Similarity=0.080 Sum_probs=28.7
Q ss_pred HHhHHHHHHHHHhhcccccccccCCHHHHHHHHHHHHHHHH
Q 021272 207 KNALENYAYNMRNTIKDDQIGSKLSAADKKRIEDTIEEAMQ 247 (315)
Q Consensus 207 kn~LEs~iy~~r~~l~~~~~~~~~~~~e~~~l~~~l~e~e~ 247 (315)
...++.-|...+.+|.++.|....+++..++-.+.+.++++
T Consensus 898 l~klekei~~~~~kLsN~~F~~KAP~evv~~e~~kl~~~~~ 938 (958)
T PLN02943 898 LSKMQTEYDALAARLSSPKFVEKAPEDVVRGVREKAAEAEE 938 (958)
T ss_pred HHHHHHHHHHHHHHhCCchhhhcCCHHHHHHHHHHHHHHHH
Confidence 34566667777778877778888887777777666665544
No 137
>PF03646 FlaG: FlaG protein; InterPro: IPR005186 Although these proteins are known to be important for flagellar their exact function is unknown.; PDB: 2HC5_A.
Probab=30.03 E-value=97 Score=23.43 Aligned_cols=44 Identities=23% Similarity=0.419 Sum_probs=29.5
Q ss_pred EEEEEEEecC-CcEEEEeeecccccccceEEecCCCCCCHHHHHHHHHHHHHh
Q 021272 142 ITVCFDIDAN-GILNVSAEDKTTGQKNKITITNDKGRLSKEEIEKMVQEAEKY 193 (315)
Q Consensus 142 i~v~f~~d~n-Gil~V~a~~~~t~~~~~l~i~~~~~~Ls~~ei~~~~~~~~~~ 193 (315)
..+.|.+|.. |.+.|...+..||+... .+..+++-++.+++.++
T Consensus 55 ~~l~F~vde~~~~~vVkViD~~T~eVIR--------qIP~Ee~l~l~~~l~e~ 99 (107)
T PF03646_consen 55 TSLRFSVDEESGRVVVKVIDKETGEVIR--------QIPPEELLDLAKRLREL 99 (107)
T ss_dssp --EEEEEEEETTEEEEEEEETTT-SEEE--------EE-HHHHHHHHHHHHHH
T ss_pred CceEEEEecCCCcEEEEEEECCCCcEEE--------eCCcHHHHHHHHHHHHH
Confidence 5699999864 88999999998886532 26677777776665544
No 138
>PRK13917 plasmid segregation protein ParM; Provisional
Probab=30.00 E-value=1.2e+02 Score=28.45 Aligned_cols=18 Identities=11% Similarity=0.239 Sum_probs=15.5
Q ss_pred CEEEEeccccceEEEEEe
Q 021272 8 PAIGIDLGTTYSCVGVWQ 25 (315)
Q Consensus 8 ~~iGID~GTtns~va~~~ 25 (315)
.++|||+|.-|++++.-.
T Consensus 3 ~v~~iDiG~g~tK~~~~~ 20 (344)
T PRK13917 3 YVMALDFGNGFVKGKIND 20 (344)
T ss_pred eEEEEeccCCeEEEEecC
Confidence 489999999999997743
No 139
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=29.92 E-value=4.5e+02 Score=24.30 Aligned_cols=39 Identities=23% Similarity=0.396 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHHHHHHhcC--c-cccHHHHHHHHHHHHHH
Q 021272 232 AADKKRIEDTIEEAMQWLDSN--Q-LAEADEFEDKMKELESI 270 (315)
Q Consensus 232 ~~e~~~l~~~l~e~e~wL~~~--~-~a~~~~~~~kl~~L~~~ 270 (315)
.+.+.++...+.+++.-+... + ......++.+++.|+++
T Consensus 245 ~~~k~e~~~~I~~ae~~~~~~r~~t~~Ei~~Lk~~~~~Le~l 286 (312)
T smart00787 245 TNKKSELNTEIAEAEKKLEQCRGFTFKEIEKLKEQLKLLQSL 286 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHH
Confidence 456788888888888888763 2 23455666666666654
No 140
>PRK00488 pheS phenylalanyl-tRNA synthetase subunit alpha; Validated
Probab=29.75 E-value=4.8e+02 Score=24.52 Aligned_cols=36 Identities=28% Similarity=0.446 Sum_probs=26.7
Q ss_pred cCCHHHHHHHHHHHHHHHHHHhcCccccHHHHHHHHHHHHHHH
Q 021272 229 KLSAADKKRIEDTIEEAMQWLDSNQLAEADEFEDKMKELESIC 271 (315)
Q Consensus 229 ~~~~~e~~~l~~~l~e~e~wL~~~~~a~~~~~~~kl~~L~~~~ 271 (315)
.+++++|.++-+.++++.+-+.. .+.++.++|+...
T Consensus 48 ~l~~eer~~~G~~~n~~k~~~~~-------~~~~~~~~l~~~~ 83 (339)
T PRK00488 48 KLPPEERKEAGALINELKQAIEA-------ALEERKEELEAAA 83 (339)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHH
Confidence 56899999999999999887766 4455555565443
No 141
>COG0554 GlpK Glycerol kinase [Energy production and conversion]
Probab=29.49 E-value=39 Score=33.04 Aligned_cols=20 Identities=35% Similarity=0.356 Sum_probs=17.7
Q ss_pred CCCEEEEeccccceEEEEEe
Q 021272 6 EGPAIGIDLGTTYSCVGVWQ 25 (315)
Q Consensus 6 ~~~~iGID~GTtns~va~~~ 25 (315)
+.+++.||-|||.|.+.++.
T Consensus 4 ~~yIlAiDqGTTssRaivfd 23 (499)
T COG0554 4 DKYILAIDQGTTSSRAIVFD 23 (499)
T ss_pred ccEEEEEecCCcceeEEEEC
Confidence 57899999999999988884
No 142
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=29.33 E-value=5.4e+02 Score=26.85 Aligned_cols=9 Identities=33% Similarity=0.744 Sum_probs=5.4
Q ss_pred CEEEEeccc
Q 021272 8 PAIGIDLGT 16 (315)
Q Consensus 8 ~~iGID~GT 16 (315)
..|.+|||.
T Consensus 213 ~AV~FDfgP 221 (717)
T PF10168_consen 213 TAVDFDFGP 221 (717)
T ss_pred eeeeccccc
Confidence 456666665
No 143
>KOG2008 consensus BTK-associated SH3-domain binding protein SAB [Signal transduction mechanisms]
Probab=29.20 E-value=4.7e+02 Score=24.27 Aligned_cols=49 Identities=16% Similarity=0.205 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHHHHHHHhc---CccccHHHHHHHHHHHHHHHHHHHHHHHcC
Q 021272 233 ADKKRIEDTIEEAMQWLDS---NQLAEADEFEDKMKELESICNPIIAKMYQG 281 (315)
Q Consensus 233 ~e~~~l~~~l~e~e~wL~~---~~~a~~~~~~~kl~~L~~~~~pi~~r~~e~ 281 (315)
+.|.++...|+.....++. .-..-..+|..-+..|+.+.+.|+.+....
T Consensus 183 E~k~~~t~~le~qk~tv~~Leaev~~~K~~Y~~slrnLE~ISd~IHeeRssq 234 (426)
T KOG2008|consen 183 ELKAKYTVQLEQQKKTVDDLEAEVTLAKGEYKMSLRNLEMISDEIHEERSSQ 234 (426)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHhhhhh
Confidence 3455555555555554443 112346789999999999999999876653
No 144
>PRK14101 bifunctional glucokinase/RpiR family transcriptional regulator; Provisional
Probab=29.19 E-value=40 Score=34.42 Aligned_cols=20 Identities=25% Similarity=0.401 Sum_probs=17.7
Q ss_pred CCCEEEEeccccceEEEEEe
Q 021272 6 EGPAIGIDLGTTYSCVGVWQ 25 (315)
Q Consensus 6 ~~~~iGID~GTtns~va~~~ 25 (315)
...++|||+|.||+.+|++.
T Consensus 17 ~~~~L~iDIGGT~ir~al~~ 36 (638)
T PRK14101 17 DGPRLLADVGGTNARFALET 36 (638)
T ss_pred CCCEEEEEcCchhheeeeec
Confidence 35699999999999999994
No 145
>TIGR01865 cas_Csn1 CRISPR-associated protein, Csn1 family. CRISPR loci appear to be mobile elements with a wide host range. This model represents a protein found only in CRISPR-containing species, near other CRISPR-associated proteins (cas), as part of the NMENI subtype of CRISPR/Cas locus. The species range so far for this protein is animal pathogens and commensals only.
Probab=28.98 E-value=57 Score=34.39 Aligned_cols=42 Identities=17% Similarity=0.187 Sum_probs=27.7
Q ss_pred CEEEEeccccceEEEEEeCCe----EEEEEcCCCCcccceEEEecCC
Q 021272 8 PAIGIDLGTTYSCVGVWQHDR----VEIIANDQGNRTTPSYVAFTDT 50 (315)
Q Consensus 8 ~~iGID~GTtns~va~~~~g~----~~vi~~~~~~~~~PS~v~~~~~ 50 (315)
.+||+|+||+.+=-|++.... +..+. ..|.+..+.+..|..+
T Consensus 2 y~LGLDiGt~SvGWAVv~~d~~~~~~~~~~-~~gvr~~~~~~~~k~g 47 (805)
T TIGR01865 2 YILGLDIGIASVGWAIVEDDYKVPAAKRLI-DGGVRNFTGAELPKTG 47 (805)
T ss_pred ceeEEeecccceeEEEEecccccccccccc-cCCeEeCcccccCCCc
Confidence 589999999998899986432 22222 3455666666666544
No 146
>PF05276 SH3BP5: SH3 domain-binding protein 5 (SH3BP5); InterPro: IPR007940 The SH3 domain-binding protein inhibits the auto and transphophorylation of BTK and acts as a negative regulator of BTK-related signalling in B cells.
Probab=28.62 E-value=4.2e+02 Score=23.52 Aligned_cols=30 Identities=13% Similarity=0.313 Sum_probs=25.1
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHcCCCCC
Q 021272 256 EADEFEDKMKELESICNPIIAKMYQGGVAP 285 (315)
Q Consensus 256 ~~~~~~~kl~~L~~~~~pi~~r~~e~~~~~ 285 (315)
.+..|..-|..|+.+.+.|+.+........
T Consensus 203 aK~~Y~~ALrnLE~ISeeIH~~R~~~~~~~ 232 (239)
T PF05276_consen 203 AKSRYSEALRNLEQISEEIHEQRRRRSAES 232 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhCCCCC
Confidence 578999999999999999998877665333
No 147
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=28.43 E-value=4.2e+02 Score=23.51 Aligned_cols=15 Identities=27% Similarity=0.625 Sum_probs=7.8
Q ss_pred CCCHHHHHHHHHHHH
Q 021272 177 RLSKEEIEKMVQEAE 191 (315)
Q Consensus 177 ~Ls~~ei~~~~~~~~ 191 (315)
.++..++.++.+++.
T Consensus 119 ~~~~~~l~~~l~ea~ 133 (264)
T PF06008_consen 119 QLPSEDLQRALAEAQ 133 (264)
T ss_pred CCCHHHHHHHHHHHH
Confidence 355556655554433
No 148
>PF01869 BcrAD_BadFG: BadF/BadG/BcrA/BcrD ATPase family; InterPro: IPR002731 This domain is found in the BadF (O07462 from SWISSPROT) and BadG (O07463 from SWISSPROT) proteins that are two subunits of Benzoyl-CoA reductase, that may be involved in ATP hydrolysis. The family also includes an activase subunit from the enzyme 2-hydroxyglutaryl-CoA dehydratase (P11568 from SWISSPROT). The hypothetical protein AQ_278 from Aquifex aeolicus O66634 from SWISSPROT contains two copies of this region suggesting that the family may structurally dimerise.; PDB: 2E2N_B 2E2Q_A 2E2P_B 2E2O_A 1ZBS_A 2CH6_A 2CH5_D 1ZC6_A 1HUX_A.
Probab=28.39 E-value=68 Score=28.57 Aligned_cols=17 Identities=29% Similarity=0.308 Sum_probs=15.1
Q ss_pred EEEeccccceEEEEEeC
Q 021272 10 IGIDLGTTYSCVGVWQH 26 (315)
Q Consensus 10 iGID~GTtns~va~~~~ 26 (315)
||||-|.|.|.++++..
T Consensus 1 lGIDgGgTkt~~vl~d~ 17 (271)
T PF01869_consen 1 LGIDGGGTKTKAVLVDE 17 (271)
T ss_dssp EEEEECSSEEEEEEEET
T ss_pred CEEeeChheeeeEEEeC
Confidence 79999999999988864
No 149
>PRK13311 N-acetyl-D-glucosamine kinase; Provisional
Probab=28.14 E-value=51 Score=29.17 Aligned_cols=20 Identities=30% Similarity=0.473 Sum_probs=17.2
Q ss_pred EEEEeccccceEEEEEe-CCe
Q 021272 9 AIGIDLGTTYSCVGVWQ-HDR 28 (315)
Q Consensus 9 ~iGID~GTtns~va~~~-~g~ 28 (315)
++|||+|.|++.++++. .+.
T Consensus 2 ~lgidiggt~i~~~l~d~~g~ 22 (256)
T PRK13311 2 YYGFDMGGTKIELGVFDENLQ 22 (256)
T ss_pred EEEEEECCCcEEEEEECCCCC
Confidence 79999999999999985 443
No 150
>TIGR02529 EutJ ethanolamine utilization protein EutJ family protein.
Probab=27.92 E-value=55 Score=28.84 Aligned_cols=14 Identities=43% Similarity=0.653 Sum_probs=12.2
Q ss_pred EEeccccceEEEEE
Q 021272 11 GIDLGTTYSCVGVW 24 (315)
Q Consensus 11 GID~GTtns~va~~ 24 (315)
|||+||++.++...
T Consensus 1 g~dig~~~ik~v~~ 14 (239)
T TIGR02529 1 GVDLGTANIVIVVL 14 (239)
T ss_pred CCCcccceEEEEEE
Confidence 79999999997665
No 151
>KOG4001 consensus Axonemal dynein light chain [Cytoskeleton]
Probab=27.69 E-value=4e+02 Score=23.03 Aligned_cols=69 Identities=16% Similarity=0.181 Sum_probs=0.0
Q ss_pred hchHHHHHHHHHHhHHHHH-HHHHhhcccccccccCCHHHHHHHHHHHHHHHHHHhcCccccHHHHHHHHHHHHHHHHHH
Q 021272 196 EDEEHKKKVEAKNALENYA-YNMRNTIKDDQIGSKLSAADKKRIEDTIEEAMQWLDSNQLAEADEFEDKMKELESICNPI 274 (315)
Q Consensus 196 ~D~~~~~~~~~kn~LEs~i-y~~r~~l~~~~~~~~~~~~e~~~l~~~l~e~e~wL~~~~~a~~~~~~~kl~~L~~~~~pi 274 (315)
.|...-..+...+.|||.+ |.||.+|.. ++++..+...+..+++ ...++..++.+++..+..-
T Consensus 155 RDEIrMt~aAYqtlyeSsvAfGmRKALqa--------e~ek~~~~~~~k~le~--------~k~~Le~~ia~~k~K~e~~ 218 (259)
T KOG4001|consen 155 RDEIRMTFAAYQTLYESSVAFGMRKALQA--------ENEKTRATTEWKVLED--------KKKELELKIAQLKKKLETD 218 (259)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------hhhhhHHHHHHHHHhh--------hHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHc
Q 021272 275 IAKMYQ 280 (315)
Q Consensus 275 ~~r~~e 280 (315)
..|-.|
T Consensus 219 e~r~~E 224 (259)
T KOG4001|consen 219 EIRSEE 224 (259)
T ss_pred HhhhHH
No 152
>COG4575 ElaB Uncharacterized conserved protein [Function unknown]
Probab=27.51 E-value=2.8e+02 Score=21.18 Aligned_cols=16 Identities=13% Similarity=0.200 Sum_probs=6.6
Q ss_pred HHHhHHHHHHHHHhhc
Q 021272 206 AKNALENYAYNMRNTI 221 (315)
Q Consensus 206 ~kn~LEs~iy~~r~~l 221 (315)
+|...++.+-+.|+.+
T Consensus 42 lR~r~~~~Lk~~r~rl 57 (104)
T COG4575 42 LRSKAESALKEARDRL 57 (104)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3334444444444444
No 153
>COG4907 Predicted membrane protein [Function unknown]
Probab=27.38 E-value=47 Score=32.22 Aligned_cols=7 Identities=43% Similarity=0.192 Sum_probs=4.0
Q ss_pred ceEEEEE
Q 021272 18 YSCVGVW 24 (315)
Q Consensus 18 ns~va~~ 24 (315)
||.|+++
T Consensus 170 nskv~~~ 176 (595)
T COG4907 170 NSKVLVF 176 (595)
T ss_pred ccceeEe
Confidence 5556655
No 154
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=27.16 E-value=6.6e+02 Score=25.29 Aligned_cols=91 Identities=19% Similarity=0.401 Sum_probs=51.2
Q ss_pred CHHHHHHHHHHHHHhhhhchHHHHHHHHHHhHHHHHHHHHhhccc--ccccccCCH--HHHHHHHHHHHHHHHHHhcCcc
Q 021272 179 SKEEIEKMVQEAEKYKSEDEEHKKKVEAKNALENYAYNMRNTIKD--DQIGSKLSA--ADKKRIEDTIEEAMQWLDSNQL 254 (315)
Q Consensus 179 s~~ei~~~~~~~~~~~~~D~~~~~~~~~kn~LEs~iy~~r~~l~~--~~~~~~~~~--~e~~~l~~~l~e~e~wL~~~~~ 254 (315)
..+++..+...+..+...+..-+.. ...|......+|..+.. -.|...+++ ..-..+.....++.+|...|+-
T Consensus 117 ~e~~~~~i~~~l~~l~~~e~~nr~~---v~~l~~~y~~~rk~ll~~~~~~G~a~~~le~~l~~~e~~f~~f~~l~~~Gd~ 193 (569)
T PRK04778 117 IEEDIEQILEELQELLESEEKNREE---VEQLKDLYRELRKSLLANRFSFGPALDELEKQLENLEEEFSQFVELTESGDY 193 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHHHHHHHhcCCCH
Confidence 3556666666666666555543332 23344444556655543 234444443 5568888889999999998743
Q ss_pred cc----HHHHHHHHHHHHHHHH
Q 021272 255 AE----ADEFEDKMKELESICN 272 (315)
Q Consensus 255 a~----~~~~~~kl~~L~~~~~ 272 (315)
.. ...++..+..|+..+.
T Consensus 194 ~~A~e~l~~l~~~~~~l~~~~~ 215 (569)
T PRK04778 194 VEAREILDQLEEELAALEQIME 215 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 22 3344444455554444
No 155
>PF05378 Hydant_A_N: Hydantoinase/oxoprolinase N-terminal region; InterPro: IPR008040 This domain is found at the N terminus of the hydantoinase/oxoprolinase IPR002821 from INTERPRO family.
Probab=27.12 E-value=60 Score=27.24 Aligned_cols=18 Identities=39% Similarity=0.674 Sum_probs=15.8
Q ss_pred EEEeccccceEEEEEeCC
Q 021272 10 IGIDLGTTYSCVGVWQHD 27 (315)
Q Consensus 10 iGID~GTtns~va~~~~g 27 (315)
||||-|.||+=+.++.++
T Consensus 2 igIDvGGT~TD~v~~d~~ 19 (176)
T PF05378_consen 2 IGIDVGGTFTDAVLLDED 19 (176)
T ss_pred eeEecCCCcEEEEEEeCC
Confidence 799999999998888665
No 156
>PF14276 DUF4363: Domain of unknown function (DUF4363)
Probab=26.99 E-value=2.9e+02 Score=21.20 Aligned_cols=87 Identities=13% Similarity=0.198 Sum_probs=53.5
Q ss_pred HHHHHHHHHHHHHhhhhchHHHHHHHHHHhHHHHHHHHHhhcccccccccCCHHHHHHHHHHHHHHHHHHhcCccccHHH
Q 021272 180 KEEIEKMVQEAEKYKSEDEEHKKKVEAKNALENYAYNMRNTIKDDQIGSKLSAADKKRIEDTIEEAMQWLDSNQLAEADE 259 (315)
Q Consensus 180 ~~ei~~~~~~~~~~~~~D~~~~~~~~~kn~LEs~iy~~r~~l~~~~~~~~~~~~e~~~l~~~l~e~e~wL~~~~~a~~~~ 259 (315)
.+.+...+..+.+.-..+ .-.+|.+.++.+...+...-. .+.-.+..++...+...+.++...+... +..+
T Consensus 25 ~~~i~~~l~~i~~~i~~~----dW~~A~~~~~~l~~~W~k~~~--~~~~~~~h~eid~i~~sl~rl~~~i~~~---dk~~ 95 (121)
T PF14276_consen 25 TDSIEEQLEQIEEAIENE----DWEKAYKETEELEKEWDKNKK--RWSILIEHQEIDNIDISLARLKGYIEAK---DKSE 95 (121)
T ss_pred HHHHHHHHHHHHHHHHhC----CHHHHHHHHHHHHHHHHhhch--heeeeecHHHHHHHHHHHHHHHHHHHCC---CHHH
Confidence 344555555444433222 134455556655555554432 4556778899999999999999999986 4455
Q ss_pred HHHHHHHHHHHHHHHH
Q 021272 260 FEDKMKELESICNPII 275 (315)
Q Consensus 260 ~~~kl~~L~~~~~pi~ 275 (315)
.-..+..|+....-|.
T Consensus 96 ~l~el~~lk~~i~~i~ 111 (121)
T PF14276_consen 96 SLAELAELKELIEHIP 111 (121)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 5556666666555443
No 157
>COG1548 Predicted transcriptional regulator/sugar kinase [Transcription / Carbohydrate transport and metabolism]
Probab=26.83 E-value=38 Score=30.49 Aligned_cols=19 Identities=21% Similarity=0.345 Sum_probs=16.1
Q ss_pred CCEEEEeccccceEEEEEe
Q 021272 7 GPAIGIDLGTTYSCVGVWQ 25 (315)
Q Consensus 7 ~~~iGID~GTtns~va~~~ 25 (315)
..++|||.|..|+.+|...
T Consensus 3 ~kilGiDIGGAntk~a~~D 21 (330)
T COG1548 3 MKILGIDIGGANTKIASSD 21 (330)
T ss_pred ceEEEeeccCccchhhhcc
Confidence 3489999999999999843
No 158
>COG2605 Predicted kinase related to galactokinase and mevalonate kinase [General function prediction only]
Probab=26.73 E-value=4.1e+02 Score=24.57 Aligned_cols=71 Identities=23% Similarity=0.316 Sum_probs=34.4
Q ss_pred EEEecCCcEEEEeeecccccc-----cceEEecCCCCCCHHHHHHHHHHHHHhhhhchHHHHHHHHHHhHHHHHHHHHhh
Q 021272 146 FDIDANGILNVSAEDKTTGQK-----NKITITNDKGRLSKEEIEKMVQEAEKYKSEDEEHKKKVEAKNALENYAYNMRNT 220 (315)
Q Consensus 146 f~~d~nGil~V~a~~~~t~~~-----~~l~i~~~~~~Ls~~ei~~~~~~~~~~~~~D~~~~~~~~~kn~LEs~iy~~r~~ 220 (315)
++.+.||-+.|.-........ ..+-+-....+.|.+-+...+++ ....|+ +..++..++....|++++.
T Consensus 163 MEf~~~~~V~v~pL~i~~e~~~Ele~~~lL~yTGi~R~Ss~V~~dQ~~~---~~~~~~---~~~e~~~~mk~~A~~~~~a 236 (333)
T COG2605 163 MEFRGNGEVVVNPLRINRERTAELEARLLLYYTGITRQSSEVIEDQVRN---VVDGDE---ETLEALHEMKALAYEMKDA 236 (333)
T ss_pred EEEcCCCcEEEeecccchhHHHHHHhceEEEEeccccchhHHHHHHHHH---hhcccH---HHHHHHHHHHHHHHHHHHH
Confidence 456677766665543332211 11222223345555544433322 222333 3344455666777888877
Q ss_pred cc
Q 021272 221 IK 222 (315)
Q Consensus 221 l~ 222 (315)
|-
T Consensus 237 l~ 238 (333)
T COG2605 237 LV 238 (333)
T ss_pred HH
Confidence 74
No 159
>KOG3591 consensus Alpha crystallins [Posttranslational modification, protein turnover, chaperones]
Probab=26.70 E-value=87 Score=26.30 Aligned_cols=38 Identities=21% Similarity=0.419 Sum_probs=25.8
Q ss_pred CCCcceEEEEEEEecCCcEEEEeeecccc--cccceEEec
Q 021272 136 PRGVPQITVCFDIDANGILNVSAEDKTTG--QKNKITITN 173 (315)
Q Consensus 136 ~~g~~~i~v~f~~d~nGil~V~a~~~~t~--~~~~l~i~~ 173 (315)
|+|.---.|+-.|+.+|+|+|++-..... ....+.|..
T Consensus 124 P~~vdp~~V~S~LS~dGvLtI~ap~~~~~~~~er~ipI~~ 163 (173)
T KOG3591|consen 124 PEDVDPTSVTSTLSSDGVLTIEAPKPPPKQDNERSIPIEQ 163 (173)
T ss_pred CCCCChhheEEeeCCCceEEEEccCCCCcCccceEEeEee
Confidence 45554466899999999999999755433 244555543
No 160
>PF00901 Orbi_VP5: Orbivirus outer capsid protein VP5; InterPro: IPR000145 The orbivirus VP5 protein is one of the two proteins (with VP2) which make up the virus particle outer capsid. Cryoelectron microscopy indicates that VP5 is a trimer suggesting that there are 360 copies of VP5 per virion [].; GO: 0005198 structural molecule activity, 0019028 viral capsid
Probab=26.40 E-value=6.4e+02 Score=24.92 Aligned_cols=16 Identities=19% Similarity=0.503 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHH
Q 021272 257 ADEFEDKMKELESICN 272 (315)
Q Consensus 257 ~~~~~~kl~~L~~~~~ 272 (315)
.++|.++++.|++.++
T Consensus 185 v~~yr~ki~aL~~aIe 200 (508)
T PF00901_consen 185 VEEYRQKIDALKNAIE 200 (508)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 6778888888887644
No 161
>PRK05729 valS valyl-tRNA synthetase; Reviewed
Probab=26.28 E-value=2.2e+02 Score=30.35 Aligned_cols=40 Identities=10% Similarity=0.139 Sum_probs=26.0
Q ss_pred HhHHHHHHHHHhhcccccccccCCHHHHHHHHHHHHHHHH
Q 021272 208 NALENYAYNMRNTIKDDQIGSKLSAADKKRIEDTIEEAMQ 247 (315)
Q Consensus 208 n~LEs~iy~~r~~l~~~~~~~~~~~~e~~~l~~~l~e~e~ 247 (315)
..|+..+...+.+|.++.|....+++..++-++.+.+++.
T Consensus 821 ~kl~~ei~~~~~kL~n~~F~~KAP~~vve~e~~kl~~~~~ 860 (874)
T PRK05729 821 AKLEKEIERVEKKLSNEGFVAKAPEEVVEKEREKLAEYEE 860 (874)
T ss_pred HHHHHHHHHHHHHhCCchhhhcCCHHHHHHHHHHHHHHHH
Confidence 4455556666777776677777777776666666654444
No 162
>COG4575 ElaB Uncharacterized conserved protein [Function unknown]
Probab=26.15 E-value=3e+02 Score=21.04 Aligned_cols=48 Identities=13% Similarity=0.205 Sum_probs=26.2
Q ss_pred HHHHHhHHHHHHHHHhhccc-ccccccCCHHHHHHHHHHHHHHHHHHhc
Q 021272 204 VEAKNALENYAYNMRNTIKD-DQIGSKLSAADKKRIEDTIEEAMQWLDS 251 (315)
Q Consensus 204 ~~~kn~LEs~iy~~r~~l~~-~~~~~~~~~~e~~~l~~~l~e~e~wL~~ 251 (315)
.+..++|..++..+...|.+ ..+...--.+-|.++...|.++++-|.+
T Consensus 11 ~~l~~el~~L~d~lEevL~ssg~~a~~e~~~lR~r~~~~Lk~~r~rl~~ 59 (104)
T COG4575 11 DQLLAELQELLDTLEEVLKSSGSLAGDEAEELRSKAESALKEARDRLGD 59 (104)
T ss_pred HHHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHHHHHHHHHHh
Confidence 44556666666666666653 2222222234456666666666666665
No 163
>PF04614 Pex19: Pex19 protein family; InterPro: IPR006708 Peroxisome(s) form an intracellular compartment, bounded by a typical lipid bilayer membrane. Peroxisome functions are often specialised by organism and cell type; two widely distributed and well-conserved functions are H2O2-based respiration and fatty acid beta-oxidation. Other functions include ether lipid (plasmalogen) synthesis and cholesterol synthesis in animals, the glyoxylate cycle in germinating seeds ("glyoxysomes"), photorespiration in leaves, glycolysis in trypanosomes ("glycosomes"), and methanol and/or amine oxidation and assimilation in some yeasts. PEX genes encode the machinery ("peroxins") required to assemble the peroxisome. Membrane assembly and maintenance requires three of these (peroxins 3, 16, and 19) and may occur without the import of the matrix (lumen) enzymes. Matrix protein import follows a branched pathway of soluble recycling receptors, with one branch for each class of peroxisome targeting sequence (two are well characterised), and a common trunk for all. At least one of these receptors, Pex5p, enters and exits peroxisomes as it functions. Proliferation of the organelle is regulated by Pex11p. Peroxisome biogenesis is remarkably conserved among eukaryotes. A group of fatal, inherited neuropathologies are recognised as peroxisome biogenesis diseases. ; GO: 0005777 peroxisome; PDB: 2WL8_B 2W85_B.
Probab=26.01 E-value=1.5e+02 Score=26.49 Aligned_cols=38 Identities=16% Similarity=0.502 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHHHhcCc-c---ccHHHHHHHHHHHHHHHH
Q 021272 235 KKRIEDTIEEAMQWLDSNQ-L---AEADEFEDKMKELESICN 272 (315)
Q Consensus 235 ~~~l~~~l~e~e~wL~~~~-~---a~~~~~~~kl~~L~~~~~ 272 (315)
.+-++++..++-.||..|. . .+.+.|+++.+-++++|.
T Consensus 142 YePmKel~~kyP~wL~~n~~~l~~ed~~rY~~Q~~~v~~I~~ 183 (248)
T PF04614_consen 142 YEPMKELRDKYPEWLEENKSKLSAEDYERYEKQYELVKEICA 183 (248)
T ss_dssp HHHHHHHHHHHHHHHHHHCCCS-HHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHhHHHHHhCcCcCCHHHHHHHHHHHHHHHHHHH
Confidence 4667777788888887742 2 245555555555555544
No 164
>PRK00976 hypothetical protein; Provisional
Probab=25.98 E-value=84 Score=29.29 Aligned_cols=25 Identities=28% Similarity=0.347 Sum_probs=19.9
Q ss_pred EEEEeccccceEEEEEeCCeEEEEE
Q 021272 9 AIGIDLGTTYSCVGVWQHDRVEIIA 33 (315)
Q Consensus 9 ~iGID~GTtns~va~~~~g~~~vi~ 33 (315)
+||||=|||-...|.+.++...+.+
T Consensus 3 ~~g~dhgt~~~~~~~~~~~~~~~f~ 27 (326)
T PRK00976 3 FVGIDHGTTGIRFAIIEGGKKSIFK 27 (326)
T ss_pred EEeecCCCccEEEEEEcCCceeEEE
Confidence 8999999999999998665544444
No 165
>PRK14155 heat shock protein GrpE; Provisional
Probab=25.86 E-value=4.4e+02 Score=22.84 Aligned_cols=88 Identities=9% Similarity=0.092 Sum_probs=43.3
Q ss_pred HHhHHHHHHHHHhhcccccccccCCHHHHHHHHHHHHHHHHHHhcCc-cccHHHHHHHHHHHHHHHHHHHHHHHcCCCCC
Q 021272 207 KNALENYAYNMRNTIKDDQIGSKLSAADKKRIEDTIEEAMQWLDSNQ-LAEADEFEDKMKELESICNPIIAKMYQGGVAP 285 (315)
Q Consensus 207 kn~LEs~iy~~r~~l~~~~~~~~~~~~e~~~l~~~l~e~e~wL~~~~-~a~~~~~~~kl~~L~~~~~pi~~r~~e~~~~~ 285 (315)
..++|.|-.+++.-.. +...+....-...|...++.++..|.... ..+...+..-++-++-+...+..-+..+....
T Consensus 40 ~AefeN~RKR~~kE~e--~~~~~a~~~~~~~LLpV~DnLerAl~~~~~~~~~~~~~~i~~Gvemi~k~~~~~L~k~GV~~ 117 (208)
T PRK14155 40 AAEAENTKRRAEREMN--DARAYAIQKFARDLLGAADNLGRATAASPKDSADPAVKNFIIGVEMTEKELLGAFERNGLKK 117 (208)
T ss_pred HHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHhhHHhhHHHHHhcccccccchHHHHHHHHHHHHHHHHHHHHHHCCCce
Confidence 3445555444433332 34445555566777778888888887621 11112333444444444455555555554433
Q ss_pred CCCCCCCCCCCC
Q 021272 286 GAGPAPGPGMDE 297 (315)
Q Consensus 286 ~~~~~~~~~~~~ 297 (315)
=.+..|--||+
T Consensus 118 -I~~~~G~~FDP 128 (208)
T PRK14155 118 -IDPAKGDKFDP 128 (208)
T ss_pred -ecCCCCCCCCh
Confidence 11113555765
No 166
>KOG3091 consensus Nuclear pore complex, p54 component (sc Nup57) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=25.74 E-value=5.4e+02 Score=25.40 Aligned_cols=64 Identities=16% Similarity=0.265 Sum_probs=29.2
Q ss_pred HHHHHHHhHHHHHHHHHhhccc-c--cccccCCHHHHHHHHHHHHHHHHHHhcCccccHHHHHHHHHHHHHH
Q 021272 202 KKVEAKNALENYAYNMRNTIKD-D--QIGSKLSAADKKRIEDTIEEAMQWLDSNQLAEADEFEDKMKELESI 270 (315)
Q Consensus 202 ~~~~~kn~LEs~iy~~r~~l~~-~--~~~~~~~~~e~~~l~~~l~e~e~wL~~~~~a~~~~~~~kl~~L~~~ 270 (315)
+.+++||.+-++=+++=+.+-. + +-..+....+-++|...|+.+..-|.. ..+++.|+.+|...
T Consensus 377 KI~~~k~r~~~Ls~RiLRv~ikqeilr~~G~~L~~~EE~Lr~Kldtll~~ln~-----Pnq~k~Rl~~L~e~ 443 (508)
T KOG3091|consen 377 KIEEAKNRHVELSHRILRVMIKQEILRKRGYALTPDEEELRAKLDTLLAQLNA-----PNQLKARLDELYEI 443 (508)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcCCccHHHHHHHHHHHHHHhcC-----hHHHHHHHHHHHHH
Confidence 3455666666555544333221 0 111122223335555555555444433 25666666666544
No 167
>COG1069 AraB Ribulose kinase [Energy production and conversion]
Probab=25.10 E-value=64 Score=32.02 Aligned_cols=22 Identities=32% Similarity=0.530 Sum_probs=18.5
Q ss_pred CCCEEEEeccccceEEEEEeCC
Q 021272 6 EGPAIGIDLGTTYSCVGVWQHD 27 (315)
Q Consensus 6 ~~~~iGID~GTtns~va~~~~g 27 (315)
+.++|||||||..-.+++++-.
T Consensus 2 ~~~~iGvDvGTgSaRA~v~D~~ 23 (544)
T COG1069 2 MAYVIGVDVGTGSARAGVFDCQ 23 (544)
T ss_pred ccEEEEEeecCCceeEEEEEcC
Confidence 4679999999999999998543
No 168
>PRK09698 D-allose kinase; Provisional
Probab=24.95 E-value=67 Score=29.09 Aligned_cols=24 Identities=21% Similarity=0.289 Sum_probs=19.5
Q ss_pred CCCCEEEEeccccceEEEEEe-CCe
Q 021272 5 GEGPAIGIDLGTTYSCVGVWQ-HDR 28 (315)
Q Consensus 5 ~~~~~iGID~GTtns~va~~~-~g~ 28 (315)
+...++|||+|.|++.++++. +|.
T Consensus 2 ~~~~~lgidig~t~i~~~l~d~~g~ 26 (302)
T PRK09698 2 QKNVVLGIDMGGTHIRFCLVDAEGE 26 (302)
T ss_pred CccEEEEEEcCCcEEEEEEEcCCCC
Confidence 346789999999999999985 443
No 169
>PF07962 Swi3: Replication Fork Protection Component Swi3; InterPro: IPR012923 Replication fork pausing is required to initiate recombination events. More specifically, Swi1 is required for recombination near the mat1 locus. Swi3 has been found to co-purify with Swi1. Together they define a fork protection complex that coordinates leading- and lagging-strand synthesis and stabilises stalled replication forks []. This complex is required for accurate replication, fork protection and replication checkpoint signalling [, ].; GO: 0006974 response to DNA damage stimulus, 0007049 cell cycle, 0048478 replication fork protection, 0005634 nucleus
Probab=24.81 E-value=2.4e+02 Score=20.46 Aligned_cols=40 Identities=10% Similarity=0.228 Sum_probs=32.6
Q ss_pred CHHHHHHHHHHHHHHHHHHhc-CccccHHHHHHHHHHHHHH
Q 021272 231 SAADKKRIEDTIEEAMQWLDS-NQLAEADEFEDKMKELESI 270 (315)
Q Consensus 231 ~~~e~~~l~~~l~e~e~wL~~-~~~a~~~~~~~kl~~L~~~ 270 (315)
...+.+.+..+++-++.|... -..++.+++..+++.|-..
T Consensus 28 kghE~~dL~~ll~~Yq~W~h~LfPk~~F~d~i~~vE~LG~~ 68 (83)
T PF07962_consen 28 KGHEYEDLRRLLQFYQLWAHRLFPKASFEDFIERVEKLGKK 68 (83)
T ss_pred CCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHcCC
Confidence 346788899999999999998 5667888888888887544
No 170
>TIGR03285 methan_mark_14 putative methanogenesis marker protein 14. Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The exact function is unknown, but likely is linked to methanogenesis or a process closely connected to it.
Probab=24.41 E-value=39 Score=31.80 Aligned_cols=50 Identities=8% Similarity=0.141 Sum_probs=26.8
Q ss_pred cCCHHHHHHHHHHHHHHHHHHhcCccccHHHHHHHHHHHHHHHHHHHHHHHcCCCCC
Q 021272 229 KLSAADKKRIEDTIEEAMQWLDSNQLAEADEFEDKMKELESICNPIIAKMYQGGVAP 285 (315)
Q Consensus 229 ~~~~~e~~~l~~~l~e~e~wL~~~~~a~~~~~~~kl~~L~~~~~pi~~r~~e~~~~~ 285 (315)
-++...-+-|.+.|.+..-|=+ ++..-.- +.=-.....++.|.+..-|.+
T Consensus 373 gITG~KP~lIle~l~~~~~~d~-~d~vVFv------dDGLA~GAavMaRCMNslGtP 422 (445)
T TIGR03285 373 GITGYKPELILEYLKNSFLWDK-EENVVFV------DDGLALGAAVMARCMNSLGTP 422 (445)
T ss_pred ccCCCChHHHHHHHHhccccCC-CCcEEEe------ccchhhhHHHHHHHHhccCCC
Confidence 3444555667777776665533 2211000 001134567899999876666
No 171
>COG4907 Predicted membrane protein [Function unknown]
Probab=23.83 E-value=71 Score=31.08 Aligned_cols=10 Identities=10% Similarity=-0.021 Sum_probs=3.8
Q ss_pred CCCcchhhhh
Q 021272 65 NPLNTVFDAK 74 (315)
Q Consensus 65 ~~~~~~~~~K 74 (315)
+|..-+.++|
T Consensus 148 ~w~~~~~S~K 157 (595)
T COG4907 148 DWQQGISSVK 157 (595)
T ss_pred CccCCcceEE
Confidence 3333333333
No 172
>PF06406 StbA: StbA protein; InterPro: IPR009440 This entry represents bacterial plasmid segregation proteins ParM and StbA []. They are involved in the control of plasmid partition and required for the accurate segregation of the plasmid. ; PDB: 3IKY_C 3IKU_I 2ZGZ_B 1MWM_A 1MWK_A 2ZHC_A 2ZGY_A 2QU4_A.
Probab=23.78 E-value=83 Score=29.00 Aligned_cols=26 Identities=27% Similarity=0.418 Sum_probs=18.1
Q ss_pred EEEEeccccceEEEEEeCCeE--EEEEc
Q 021272 9 AIGIDLGTTYSCVGVWQHDRV--EIIAN 34 (315)
Q Consensus 9 ~iGID~GTtns~va~~~~g~~--~vi~~ 34 (315)
-|+||=|.||.+++++.+|.. .+.++
T Consensus 2 ~i~iDdG~~~~K~~~~~~~~~~~~~~~~ 29 (318)
T PF06406_consen 2 KIAIDDGSTNVKLAWYEDGKIKTSISPN 29 (318)
T ss_dssp EEEEEE-SSEEEEEEE-SS-EEEEEEE-
T ss_pred eEEEecCCCceeEEEecCCeEEEEeccc
Confidence 489999999999999988854 44443
No 173
>PF03484 B5: tRNA synthetase B5 domain; InterPro: IPR005147 Domain B5 is found in phenylalanine-tRNA synthetase beta subunits. This domain has been shown to bind DNA through a winged helix-turn-helix motif []. Phenylalanine-tRNA synthetase may influence common cellular processes via DNA binding, in addition to its aminoacylation function.; GO: 0000287 magnesium ion binding, 0003723 RNA binding, 0005524 ATP binding, 0006432 phenylalanyl-tRNA aminoacylation; PDB: 2AKW_B 1B70_B 1B7Y_B 2ALY_B 2IY5_B 2AMC_B 3PCO_D 2CXI_C 1JJC_B 1EIY_B ....
Probab=23.37 E-value=26 Score=24.47 Aligned_cols=39 Identities=23% Similarity=0.278 Sum_probs=25.5
Q ss_pred hhhhhhhhcCCCCChhhhcccCCCCccccCCCCCCCeEE
Q 021272 70 VFDAKRLIGRRFSDSSVQGDIKHWPFKVIPGAGDKPTIV 108 (315)
Q Consensus 70 ~~~~KrliG~~~~~~~v~~~~~~~~~~vv~~~~g~~~i~ 108 (315)
...+++++|..++...+...+.++.|++....++...+.
T Consensus 8 ~~~i~~~lG~~i~~~~i~~~L~~lg~~~~~~~~~~~~v~ 46 (70)
T PF03484_consen 8 LDKINKLLGIDISPEEIIKILKRLGFKVEKIDGDTLEVT 46 (70)
T ss_dssp HHHHHHHHTS---HHHHHHHHHHTT-EEEE-CTTEEEEE
T ss_pred HHHHHHHhCCCCCHHHHHHHHHHCCCEEEECCCCEEEEE
Confidence 447899999999988898889999999876434444443
No 174
>PF09887 DUF2114: Uncharacterized protein conserved in archaea (DUF2114); InterPro: IPR008303 There are currently no experimental data for members of this group or their homologues. The exact function of this protein is unknown, but likely is linked to methanogenesis or a process closely connected to it.
Probab=23.02 E-value=42 Score=31.69 Aligned_cols=16 Identities=13% Similarity=0.144 Sum_probs=12.1
Q ss_pred HHHHHHHHHHcCCCCC
Q 021272 270 ICNPIIAKMYQGGVAP 285 (315)
Q Consensus 270 ~~~pi~~r~~e~~~~~ 285 (315)
....++.|.+..-|.+
T Consensus 411 rGAavMaRCMNslGtP 426 (448)
T PF09887_consen 411 RGAAVMARCMNSLGTP 426 (448)
T ss_pred hhHHHHHHHHHhcCCC
Confidence 4567889999876665
No 175
>cd07313 terB_like_2 tellurium resistance terB-like protein, subgroup 2. This family includes several uncharacterized bacterial proteins. Protein sequence homology analysis shows they are similar to tellurium resistance protein terB, but the function of this family is unknown.
Probab=22.75 E-value=3.1e+02 Score=20.14 Aligned_cols=18 Identities=17% Similarity=0.222 Sum_probs=13.1
Q ss_pred CCCCCHHHHHHHHHHHHH
Q 021272 175 KGRLSKEEIEKMVQEAEK 192 (315)
Q Consensus 175 ~~~Ls~~ei~~~~~~~~~ 192 (315)
++..+..|++.+..-+..
T Consensus 13 DG~v~~~E~~~i~~~l~~ 30 (104)
T cd07313 13 DGEYDEEERAAIDRLLAE 30 (104)
T ss_pred cCCCCHHHHHHHHHHHHH
Confidence 456888888887766555
No 176
>COG4296 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=22.64 E-value=1.5e+02 Score=23.86 Aligned_cols=22 Identities=23% Similarity=0.637 Sum_probs=17.0
Q ss_pred HHHHHHhc-CccccHHHHHHHHH
Q 021272 244 EAMQWLDS-NQLAEADEFEDKMK 265 (315)
Q Consensus 244 e~e~wL~~-~~~a~~~~~~~kl~ 265 (315)
..++||++ ....+++++++|+.
T Consensus 90 knE~WleEDe~~iTpE~fk~Rm~ 112 (156)
T COG4296 90 KNEDWLEEDEQPITPESFKERMA 112 (156)
T ss_pred chhhhhhccCCccCHHHHHHHhh
Confidence 45889998 46789999987653
No 177
>PLN02381 valyl-tRNA synthetase
Probab=22.53 E-value=3.8e+02 Score=29.40 Aligned_cols=39 Identities=8% Similarity=0.152 Sum_probs=25.4
Q ss_pred hHHHHHHHHHhhcccccccccCCHHHHHHHHHHHHHHHH
Q 021272 209 ALENYAYNMRNTIKDDQIGSKLSAADKKRIEDTIEEAMQ 247 (315)
Q Consensus 209 ~LEs~iy~~r~~l~~~~~~~~~~~~e~~~l~~~l~e~e~ 247 (315)
.++..|...+..|.++.|....+++..++-++.+.+++.
T Consensus 1008 klekei~~~~~kLsN~~F~~KAP~~vve~e~~kl~~~~~ 1046 (1066)
T PLN02381 1008 EIQKQQEKLEKKMNASGYKEKVPANIQEEDARKLTKLLQ 1046 (1066)
T ss_pred HHHHHHHHHHhhhcCCchhhcCCHHHHHHHHHHHHHHHH
Confidence 444555566677776677777777777666666665544
No 178
>TIGR03123 one_C_unchar_1 probable H4MPT-linked C1 transfer pathway protein. This protein family was identified, by the method of partial phylogenetic profiling, as related to the use of tetrahydromethanopterin (H4MPT) as a C-1 carrier. Characteristic markers of the H4MPT-linked C1 transfer pathway include formylmethanofuran dehydrogenase subunits, methenyltetrahydromethanopterin cyclohydrolase, etc. Tetrahydromethanopterin, a tetrahydrofolate analog, occurs in methanogenic archaea, bacterial methanotrophs, planctomycetes, and a few other lineages.
Probab=22.41 E-value=96 Score=28.79 Aligned_cols=27 Identities=15% Similarity=0.069 Sum_probs=23.5
Q ss_pred CCCEEEEeccccceEEEEEeCCeEEEE
Q 021272 6 EGPAIGIDLGTTYSCVGVWQHDRVEII 32 (315)
Q Consensus 6 ~~~~iGID~GTtns~va~~~~g~~~vi 32 (315)
..-+|-+|.|.|.+-|+.+.+|++.+.
T Consensus 127 ~~~~I~~DmGGTTtDi~~i~~G~p~~~ 153 (318)
T TIGR03123 127 IPECLFVDMGSTTTDIIPIIDGEVAAK 153 (318)
T ss_pred CCCEEEEEcCccceeeEEecCCEeeee
Confidence 455899999999999999999988765
No 179
>PF14712 Snapin_Pallidin: Snapin/Pallidin
Probab=22.29 E-value=3.1e+02 Score=19.85 Aligned_cols=20 Identities=10% Similarity=0.288 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 021272 258 DEFEDKMKELESICNPIIAK 277 (315)
Q Consensus 258 ~~~~~kl~~L~~~~~pi~~r 277 (315)
..|..|+..+++-+.-+..|
T Consensus 60 ~~y~~KL~~ikkrm~~l~~~ 79 (92)
T PF14712_consen 60 DPYVKKLVNIKKRMSNLHER 79 (92)
T ss_pred hHHHHHHHHHHHHHHHHHHH
Confidence 33666666665554444443
No 180
>COG1334 FlaG Uncharacterized flagellar protein FlaG [Cell motility and secretion]
Probab=21.84 E-value=2.8e+02 Score=21.84 Aligned_cols=41 Identities=27% Similarity=0.339 Sum_probs=29.2
Q ss_pred EEEEEEEe-cCCcEEEEeeecccccccceEEecCCCCCCHHHHHHHHHHH
Q 021272 142 ITVCFDID-ANGILNVSAEDKTTGQKNKITITNDKGRLSKEEIEKMVQEA 190 (315)
Q Consensus 142 i~v~f~~d-~nGil~V~a~~~~t~~~~~l~i~~~~~~Ls~~ei~~~~~~~ 190 (315)
-.+.|+|| .-|.+.|+..+..||+... ...++++-++.+++
T Consensus 67 t~l~F~~dd~lg~~vVkI~d~~TgeVIR--------qIPpee~L~l~~r~ 108 (120)
T COG1334 67 THLNFSYDDELGELVVKIIDKDTGEVIR--------QIPPEEALELAARM 108 (120)
T ss_pred CceEEEEecccCcEEEEEEECCCCcchh--------hCChHHHHHHHHHH
Confidence 35899997 4699999999999987542 25666665554443
No 181
>PF01968 Hydantoinase_A: Hydantoinase/oxoprolinase; InterPro: IPR002821 This family includes the enzymes hydantoinase and oxoprolinase (3.5.2.9 from EC). Both reactions involve the hydrolysis of 5-membered rings via hydrolysis of their internal imide bonds [].; GO: 0016787 hydrolase activity; PDB: 3C0B_C 3CET_B.
Probab=21.69 E-value=1e+02 Score=27.99 Aligned_cols=27 Identities=30% Similarity=0.394 Sum_probs=19.4
Q ss_pred CCEEEEeccccceEEEEEeCCeEEEEE
Q 021272 7 GPAIGIDLGTTYSCVGVWQHDRVEIIA 33 (315)
Q Consensus 7 ~~~iGID~GTtns~va~~~~g~~~vi~ 33 (315)
..+|.+|.|.|.+=|+.+.+|.|.+-.
T Consensus 77 ~~~i~vDmGGTTtDi~~i~~G~p~~~~ 103 (290)
T PF01968_consen 77 ENAIVVDMGGTTTDIALIKDGRPEISS 103 (290)
T ss_dssp SSEEEEEE-SS-EEEEEEETTEE----
T ss_pred CCEEEEeCCCCEEEEEEEECCeeeccc
Confidence 468999999999999999999886544
No 182
>COG4020 Uncharacterized protein conserved in archaea [Function unknown]
Probab=21.31 E-value=97 Score=27.83 Aligned_cols=21 Identities=24% Similarity=0.422 Sum_probs=18.0
Q ss_pred CEEEEeccccceEEEEEeCCe
Q 021272 8 PAIGIDLGTTYSCVGVWQHDR 28 (315)
Q Consensus 8 ~~iGID~GTtns~va~~~~g~ 28 (315)
..||||-|||-.+.|++.+..
T Consensus 4 ~fVGiDHGTsgi~~ai~d~e~ 24 (332)
T COG4020 4 MFVGIDHGTSGIKFAIYDGEK 24 (332)
T ss_pred EEEeecCCCcceEEEEEcCCC
Confidence 489999999999999987543
No 183
>KOG2912 consensus Predicted DNA methylase [Function unknown]
Probab=20.99 E-value=45 Score=31.02 Aligned_cols=12 Identities=58% Similarity=1.019 Sum_probs=11.1
Q ss_pred EEeccccceEEE
Q 021272 11 GIDLGTTYSCVG 22 (315)
Q Consensus 11 GID~GTtns~va 22 (315)
|||+||+-||+-
T Consensus 106 GiDIgtgasci~ 117 (419)
T KOG2912|consen 106 GIDIGTGASCIY 117 (419)
T ss_pred eeeccCchhhhH
Confidence 999999999984
No 184
>COG1940 NagC Transcriptional regulator/sugar kinase [Transcription / Carbohydrate transport and metabolism]
Probab=20.88 E-value=1.2e+02 Score=27.59 Aligned_cols=23 Identities=26% Similarity=0.313 Sum_probs=19.3
Q ss_pred CCCEEEEeccccceEEEEEeC-Ce
Q 021272 6 EGPAIGIDLGTTYSCVGVWQH-DR 28 (315)
Q Consensus 6 ~~~~iGID~GTtns~va~~~~-g~ 28 (315)
+..++|||+|.|++.+++... |.
T Consensus 5 ~~~~lgidIggt~i~~~l~d~~g~ 28 (314)
T COG1940 5 AMTVLGIDIGGTKIKVALVDLDGE 28 (314)
T ss_pred CcEEEEEEecCCEEEEEEECCCCc
Confidence 567999999999999998854 44
No 185
>PF09457 RBD-FIP: FIP domain ; InterPro: IPR019018 The Rab11 GTPase regulates recycling of internalized plasma membrane receptors and is essential for completion of cytokinesis. A family of Rab11 interacting proteins (FIPs) that conserve a C-terminal Rab-binding domain (RBD) selectively recognise the active form of Rab11. FIPs are diverse in sequence length and composition toward their N-termini, presumably a feature that underpins their specific roles in Rab11-mediated vesicle trafficking. They have been divided into three subfamilies (classe I, II, and III)on the basis of domain architecture. Class I FIPs comprises a subfamily of three proteins (Rip11/pp75/FIP5, Rab-coupling protein (RCP), and FIP2) that possess an N- terminal C2 domain, localize to recycling endosomes, and regulate plasma membrane recycling. The class II subfamily consists of two proteins (FIP3/eferin/arfophilin and FIP4) with tandem EF hands and a proline-rich region. Class II FIPs localize to recycling endosomes, the trans-Golgi network, and have been implicated in the regulation of membrane trafficking during cytokinesis. The class III subfamily consists of a single protein, FIP1, which does not contain obvious homology domains or motifs other than the FIP-RBD [, , , ]. The FIP-RBD domain is also found in Rab6-interacting protein Erc1/Elks. Erc1 is the regulatory subunit of the IKK complex and probably recruits IkappaBalpha/NFKBIA to the complex []. It may be involved in the organisation of the cytomatrix at the nerve terminals active zone (CAZ) which regulates neurotransmitter release. It may also be involved in vesicle trafficking at the CAZ, as well as in Rab-6 regulated endosomes to Golgi transport []. The FIB-RBD domain consists of an N-terminal long alpha-helix, followed by a 90 degrees bend at a conserved proline residue, a 3(10) helix and a C-terminal short beta-strand, adopting an "L" shape. The long alpha-helix forms a parallel coiled-coil homodimer that symmetrically interacts with two Rab11 molecules on both sides, forming a quaternary Rab11-(FIP)2-Rab11 complex. The Rab11-interacting region of FIP-RBD is confined to the C-terminal 24 amino acids, which cover the C-terminal half of the long alpha-helix and the short beta-strand [, , , ]. This entry represents the FIP-RBD domain.; PDB: 2HV8_E 2D7C_D 2K6S_B 2GZD_D 2GZH_B.
Probab=20.72 E-value=2.5e+02 Score=18.20 Aligned_cols=24 Identities=13% Similarity=0.389 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcCC
Q 021272 259 EFEDKMKELESICNPIIAKMYQGG 282 (315)
Q Consensus 259 ~~~~kl~~L~~~~~pi~~r~~e~~ 282 (315)
.-..++++|+..++.+..|++|..
T Consensus 18 ~k~~~v~eLe~YiD~LL~rVmE~~ 41 (48)
T PF09457_consen 18 RKDSRVRELEDYIDNLLVRVMEQT 41 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhC
Confidence 335578889999999999998864
No 186
>PF06667 PspB: Phage shock protein B; InterPro: IPR009554 This family consists of several bacterial phage shock protein B (PspB) sequences. The phage shock protein (psp) operon is induced in response to heat, ethanol, osmotic shock and infection by filamentous bacteriophages []. Expression of the operon requires the alternative sigma factor sigma54 and the transcriptional activator PspF. In addition, PspA plays a negative regulatory role, and the integral-membrane proteins PspB and PspC play a positive one [].; GO: 0006355 regulation of transcription, DNA-dependent, 0009271 phage shock
Probab=20.62 E-value=3.3e+02 Score=19.49 Aligned_cols=34 Identities=29% Similarity=0.590 Sum_probs=24.8
Q ss_pred cccCCHHHHHHHHHHHHHHHHHHhcCccccHHHHHHHHHHHHHHHH
Q 021272 227 GSKLSAADKKRIEDTIEEAMQWLDSNQLAEADEFEDKMKELESICN 272 (315)
Q Consensus 227 ~~~~~~~e~~~l~~~l~e~e~wL~~~~~a~~~~~~~kl~~L~~~~~ 272 (315)
...++++|.+.|.++.+ ..+.+++|++.|+.+.+
T Consensus 33 ~~gLs~~d~~~L~~L~~------------~a~rm~eRI~tLE~ILd 66 (75)
T PF06667_consen 33 SQGLSEEDEQRLQELYE------------QAERMEERIETLERILD 66 (75)
T ss_pred CCCCCHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHc
Confidence 35677888877776665 34667888888888866
No 187
>PRK09458 pspB phage shock protein B; Provisional
Probab=20.56 E-value=2.7e+02 Score=19.97 Aligned_cols=34 Identities=24% Similarity=0.518 Sum_probs=25.0
Q ss_pred cccCCHHHHHHHHHHHHHHHHHHhcCccccHHHHHHHHHHHHHHHH
Q 021272 227 GSKLSAADKKRIEDTIEEAMQWLDSNQLAEADEFEDKMKELESICN 272 (315)
Q Consensus 227 ~~~~~~~e~~~l~~~l~e~e~wL~~~~~a~~~~~~~kl~~L~~~~~ 272 (315)
...++++|.+.|.++.+ ..+.+++|++.|+++.+
T Consensus 33 ~~~Ls~~d~~~L~~L~~------------~A~rm~~RI~tLE~ILD 66 (75)
T PRK09458 33 SQGLSQEEQQRLAQLTE------------KAERMRERIQALEAILD 66 (75)
T ss_pred CCCCCHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHc
Confidence 34678888888777665 34667888888888766
No 188
>PF07729 FCD: FCD domain; InterPro: IPR011711 Many bacterial transcription regulation proteins bind DNA through a helix-turn-helix (HTH) motif, which can be classified into subfamilies on the basis of sequence similarities. The HTH GntR family has many members distributed among diverse bacterial groups that regulate various biological processes. It was named GntR after the Bacillus subtilis repressor of the gluconate operon []. In general, these proteins contain a DNA-binding HTH domain at the N terminus, and an effector binding or oligomerisation domain at the C terminus. The winged-helix DNA-binding domain is well conserved in structure for the whole of the GntR family (IPR000524 from INTERPRO), and is similar in structure to other transcriptional regulator families. The C-terminal effector-binding and oligomerisation domains are more variable and are consequently used to define the subfamilies. Based on the sequence and structure of the C-terminal domains, the GtnR family can be divided into four major groups, as represented by FadR (IPR008920 from INTERPRO), HutC, MocR and YtrA, as well as some minor groups such as those represented by AraR and PlmA []. This entry represents the C-terminal ligand binding domain of many members of the GntR family. This domain probably binds to a range of effector molecules that regulate the transcription of genes through the action of the N-terminal DNA-binding domain. This domain is found in P45427 from SWISSPROT and P31460 from SWISSPROT that are regulators of sugar biosynthesis operons.; PDB: 3SXK_A 3SXY_A 3SXM_B 3SXZ_A 3FMS_A 2DI3_B 2HS5_A 3IHU_B 3C7J_A.
Probab=20.16 E-value=3.5e+02 Score=19.68 Aligned_cols=25 Identities=12% Similarity=0.365 Sum_probs=17.1
Q ss_pred cccCCHHHHHHHHHHHHHHHHHHhc
Q 021272 227 GSKLSAADKKRIEDTIEEAMQWLDS 251 (315)
Q Consensus 227 ~~~~~~~e~~~l~~~l~e~e~wL~~ 251 (315)
....++++...+.+.+.+.......
T Consensus 18 ~~~~~~~~~~~l~~~~~~~~~~~~~ 42 (125)
T PF07729_consen 18 AQRITDEDIAELEELLEQMEEAIED 42 (125)
T ss_dssp GGCCCHHHHHHHHHHHHHHHHHHHC
T ss_pred HHcCCHHHHHHHHHHHHHHHhhhhh
Confidence 3456677777777777777766664
Done!