Query 021274
Match_columns 315
No_of_seqs 166 out of 1076
Neff 4.4
Searched_HMMs 29240
Date Mon Mar 25 15:18:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021274.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/021274hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3koj_A Uncharacterized protein 99.9 2.1E-26 7.2E-31 189.6 12.5 92 67-158 9-107 (108)
2 3vdy_A SSB, single-stranded DN 99.9 7.5E-26 2.6E-30 185.7 14.1 99 67-165 3-111 (116)
3 3ull_A DNA binding protein; DN 99.9 4E-25 1.4E-29 185.7 11.4 101 66-166 11-130 (132)
4 3ulp_A Single-strand binding p 99.9 1.1E-24 3.7E-29 181.2 13.2 98 67-164 4-121 (124)
5 2vw9_A Single-stranded DNA bin 99.9 8.5E-25 2.9E-29 184.7 12.7 98 68-165 1-110 (134)
6 1z9f_A Single-strand binding p 99.9 1.7E-24 5.9E-29 187.3 13.2 100 67-166 14-125 (153)
7 1qvc_A Single stranded DNA bin 99.9 2.3E-24 7.8E-29 184.3 13.0 100 67-166 3-118 (145)
8 1txy_A Primosomal replication 99.9 6.8E-25 2.3E-29 177.8 9.1 94 68-162 1-102 (104)
9 3tqy_A Single-stranded DNA-bin 99.9 5.1E-24 1.7E-28 184.9 13.4 99 66-164 5-116 (158)
10 3lgj_A Single-stranded DNA-bin 99.9 1.1E-23 3.9E-28 184.9 13.9 100 67-166 21-138 (169)
11 1v1q_A Primosomal replication 99.9 3.8E-24 1.3E-28 182.4 10.3 98 68-166 18-123 (134)
12 4gs3_A Single-stranded DNA-bin 99.9 1.3E-23 4.5E-28 173.1 10.5 90 70-161 12-106 (107)
13 4dam_A Single-stranded DNA-bin 99.9 2.9E-23 9.8E-28 174.9 11.2 92 68-161 14-119 (128)
14 3afp_A Single-stranded DNA-bin 99.9 4.4E-23 1.5E-27 180.6 12.3 97 68-164 3-117 (168)
15 3pgz_A Single-stranded DNA-bin 99.9 4.5E-23 1.6E-27 185.1 11.7 100 67-166 24-141 (193)
16 1eqq_A Single stranded DNA bin 99.9 1.3E-23 4.6E-28 185.7 5.8 99 67-165 4-118 (178)
17 3fhw_A Primosomal replication 99.9 1.1E-22 3.8E-27 169.3 10.5 92 69-164 1-100 (115)
18 3k7u_C MP18 RNA editing comple 99.9 1.8E-22 6.1E-27 174.4 11.8 97 67-165 4-119 (148)
19 3k8a_A Putative primosomal rep 99.9 1.4E-22 4.8E-27 165.2 9.6 87 70-161 8-102 (103)
20 3k81_C MP18 RNA editing comple 99.9 2.2E-22 7.5E-27 176.8 11.3 99 66-166 19-136 (164)
21 3eiv_A Single-stranded DNA-bin 99.9 8.2E-22 2.8E-26 177.7 14.8 95 69-163 4-112 (199)
22 2fxq_A Single-strand binding p 99.9 6.6E-22 2.3E-26 182.6 12.8 99 67-166 126-233 (264)
23 1se8_A Single-strand binding p 99.9 2.5E-21 8.6E-26 183.1 13.4 98 67-164 3-113 (301)
24 2fxq_A Single-strand binding p 99.9 1.3E-21 4.3E-26 180.8 11.1 98 67-164 3-111 (264)
25 1se8_A Single-strand binding p 99.8 1.2E-20 4E-25 178.6 12.5 98 67-165 127-236 (301)
26 3en2_A Probable primosomal rep 99.8 5.8E-20 2E-24 149.8 7.4 76 69-145 2-85 (101)
27 4dni_A Fusion protein of RNA-e 99.8 1.9E-19 6.6E-24 167.7 10.1 84 69-155 146-245 (257)
28 4dni_A Fusion protein of RNA-e 99.7 1.3E-17 4.4E-22 155.4 10.1 94 65-162 26-129 (257)
29 3stb_C RNA-editing complex pro 99.7 1.8E-16 6.3E-21 137.1 10.7 78 66-145 41-125 (148)
30 4dka_C RNA-editing complex pro 97.4 0.00089 3E-08 54.9 9.2 70 70-141 4-77 (105)
31 2k50_A Replication factor A re 96.1 0.041 1.4E-06 43.7 9.5 70 70-144 17-90 (115)
32 3dm3_A Replication factor A; p 95.8 0.04 1.4E-06 44.2 8.4 80 70-161 15-98 (105)
33 3e0e_A Replication protein A; 95.7 0.033 1.1E-06 43.8 7.4 79 70-161 12-94 (97)
34 1o7i_A SSB, SSO2364, single st 94.0 0.2 6.7E-06 40.4 7.9 63 70-140 13-79 (119)
35 1ynx_A Replication factor-A pr 92.1 0.26 8.8E-06 39.6 5.8 64 69-136 14-80 (114)
36 2k75_A Uncharacterized protein 91.8 0.54 1.8E-05 37.5 7.3 60 69-139 13-75 (106)
37 2hql_A Hypothetical protein Mg 90.2 4.9 0.00017 32.4 11.3 87 67-157 6-96 (110)
38 3f2b_A DNA-directed DNA polyme 88.5 3.6 0.00012 44.9 12.5 86 67-161 15-102 (1041)
39 4gop_B Putative uncharacterize 84.8 4.9 0.00017 32.8 8.8 89 60-164 27-118 (136)
40 1eov_A ASPRS, aspartyl-tRNA sy 83.0 19 0.00065 35.8 13.7 86 70-164 37-131 (487)
41 3kdf_D Replication protein A 3 81.9 6.9 0.00023 31.8 8.5 89 61-165 23-114 (132)
42 2hpi_A DNA polymerase III alph 78.8 3.5 0.00012 45.7 7.3 79 71-161 1044-1122(1220)
43 1jmc_A Protein (replication pr 77.9 5.3 0.00018 35.1 7.0 63 69-135 18-83 (246)
44 1wyd_A Hypothetical aspartyl-t 74.4 26 0.00088 34.2 11.4 80 70-163 17-98 (429)
45 4gop_C Putative uncharacterize 74.0 5 0.00017 38.8 6.2 63 70-136 14-79 (444)
46 1x54_A Asparaginyl-tRNA synthe 73.2 31 0.0011 33.7 11.7 81 70-163 17-101 (434)
47 3m4p_A Ehasnrs, asparaginyl-tR 72.5 15 0.0005 36.3 9.3 86 70-164 31-123 (456)
48 3nem_A Aspartyl-tRNA synthetas 72.1 63 0.0021 31.6 13.6 82 70-164 17-102 (438)
49 3bju_A Lysyl-tRNA synthetase; 70.0 36 0.0012 34.1 11.6 79 71-163 57-141 (521)
50 1n9w_A Aspartyl-tRNA synthetas 69.8 34 0.0012 33.3 11.1 74 70-163 14-88 (422)
51 2xgt_A Asparaginyl-tRNA synthe 69.4 28 0.00095 34.0 10.4 82 71-162 13-96 (435)
52 1jmc_A Protein (replication pr 68.1 16 0.00054 32.0 7.6 67 71-142 140-210 (246)
53 2pi2_A Replication protein A 3 66.8 18 0.0006 33.0 7.9 56 105-166 97-155 (270)
54 3kf8_A Protein STN1; OB fold; 65.9 25 0.00087 31.9 8.6 102 62-163 78-185 (220)
55 1wjj_A Hypothetical protein F2 65.8 10 0.00034 32.2 5.6 60 69-136 26-98 (145)
56 3i7f_A Aspartyl-tRNA synthetas 63.7 70 0.0024 32.5 12.3 84 70-163 63-153 (548)
57 3au7_A TIAS, putative uncharac 63.2 48 0.0016 32.5 10.6 77 67-161 282-360 (402)
58 1l0w_A Aspartyl-tRNA synthetas 60.8 50 0.0017 33.6 10.6 83 71-163 18-103 (580)
59 3a74_A Lysyl-tRNA synthetase; 60.8 79 0.0027 31.4 11.9 78 71-163 58-139 (493)
60 1c0a_A Aspartyl tRNA synthetas 60.7 59 0.002 33.0 11.1 83 71-163 17-105 (585)
61 2kbn_A Conserved protein; nucl 60.6 43 0.0015 26.3 8.2 62 69-140 15-77 (109)
62 1e1o_A Lysyl-tRNA synthetase, 59.7 73 0.0025 31.8 11.4 78 71-163 66-148 (504)
63 3kf6_A Protein STN1; OB fold, 56.1 94 0.0032 26.4 10.6 88 64-166 42-132 (159)
64 2vl6_A SSO MCM N-TER, minichro 47.9 51 0.0017 29.6 7.5 52 106-161 210-266 (268)
65 4hik_A Protection of telomeres 46.8 13 0.00046 31.4 3.2 26 108-133 66-91 (143)
66 4ex5_A Lysine--tRNA ligase; st 46.6 1.7E+02 0.0058 29.5 11.7 78 71-163 88-169 (529)
67 4hsp_A Hypothetical protein; P 40.9 23 0.00079 30.4 3.8 84 67-159 51-144 (150)
68 4fa8_A Secreted protein BARF1; 36.0 32 0.0011 28.9 3.9 102 21-138 100-202 (203)
69 1ltl_A DNA replication initiat 31.5 76 0.0026 28.7 5.9 51 106-161 197-248 (279)
70 1xjv_A Protection of telomeres 31.4 55 0.0019 29.9 5.0 72 70-145 16-87 (294)
71 4eh1_A Flavohemoprotein; struc 27.1 1.2E+02 0.0042 25.5 6.2 28 115-142 83-110 (243)
72 4gop_C Putative uncharacterize 24.3 1.8E+02 0.0062 27.8 7.5 71 71-144 135-211 (444)
73 3mal_A Stromal cell-derived fa 22.2 16 0.00055 32.2 -0.5 27 228-254 145-173 (199)
74 1t9f_A Protein 1D10; structura 21.5 18 0.00062 31.3 -0.2 28 228-255 133-162 (187)
75 4ah6_A Aspartate--tRNA ligase, 20.7 1.9E+02 0.0066 29.7 7.1 81 71-164 26-114 (617)
76 1gm5_A RECG; helicase, replica 20.5 62 0.0021 33.9 3.5 61 71-139 167-229 (780)
77 1qzg_A Protection of telomeres 20.2 1.1E+02 0.0037 27.0 4.5 74 71-145 44-120 (187)
No 1
>3koj_A Uncharacterized protein YCF41; single-strand binding protein family, PF00436, SNR59A, NESG, structural genomics, PSI-2; 1.90A {Synechococcus elongatus pcc 6301}
Probab=99.94 E-value=2.1e-26 Score=189.62 Aligned_cols=92 Identities=16% Similarity=0.159 Sum_probs=81.0
Q ss_pred CCccEEEEEEEeCCCceEEEcCCC-cEEEEEEEEEcC---CCCCeEEEEEEecchHHHHHhhcCCCCeEEEEEEeEecCC
Q 021274 67 KVANSVNLIGHVDAPVQFQTSSDG-KHWAGTVIVQHA---ASHSLWIPILFEGDLAHIASSHLKKDDHVHIAGQLTADPP 142 (315)
Q Consensus 67 ~l~NsV~LIGrLg~DPElr~T~~G-k~VA~ftLAV~r---~~~T~wI~Vv~wGkLAE~aakhLKKGD~V~VeGRL~srs~ 142 (315)
..+|+|+|||||++|||+|+|++| .++|+|+||+++ .++++||+|++||++||.|++||+|||+|+|+|+|++++|
T Consensus 9 ~~~~~v~LiGrL~~DPelR~t~~g~~~va~f~lAv~~~~~~~~t~fi~vv~wgk~AE~~~~yl~KG~~V~VeGrL~~r~y 88 (108)
T 3koj_A 9 SHMNSCILQATVVEAPQLRYAQDNQTPVAEMVVQFPGLSSKDAPARLKVVGWGAVAQELQDRCRLNDEVVLEGRLRINSL 88 (108)
T ss_dssp SSCEEEEEEEEEEEEEEEEECTTSSSEEEEEEEEECC-----CCEEEEEEEETHHHHHHHHHCCTTCEEEEEEEEEEEC-
T ss_pred cccceEEEEEEECCCCEEEEeCCCCEEEEEEEEEECCcccCCCcEEEEEEEEhHHHHHHHHhCCCCCEEEEEEEEEeeeE
Confidence 358999999999999999999998 999999999995 3479999999999999999999999999999999999999
Q ss_pred CcC---CeEEEEEEEeEEe
Q 021274 143 AIE---GQANVQVMVHSLN 158 (315)
Q Consensus 143 edk---~rs~~eVvVe~I~ 158 (315)
+++ .++.+||+|++|.
T Consensus 89 ~~kdG~kr~~tEVva~~i~ 107 (108)
T 3koj_A 89 LKPDGNREKQTELTVTRVH 107 (108)
T ss_dssp -------CCEEEEEEEEEE
T ss_pred ECCCCCEEEEEEEEEEEEE
Confidence 985 5788999999874
No 2
>3vdy_A SSB, single-stranded DNA-binding protein SSBB; OB fold; 2.80A {Bacillus subtilis}
Probab=99.93 E-value=7.5e-26 Score=185.74 Aligned_cols=99 Identities=14% Similarity=0.220 Sum_probs=88.2
Q ss_pred CCccEEEEEEEeCCCceEEEcCCCcEEEEEEEEEcCC-------CCCeEEEEEEecchHHHHHhhcCCCCeEEEEEEeEe
Q 021274 67 KVANSVNLIGHVDAPVQFQTSSDGKHWAGTVIVQHAA-------SHSLWIPILFEGDLAHIASSHLKKDDHVHIAGQLTA 139 (315)
Q Consensus 67 ~l~NsV~LIGrLg~DPElr~T~~Gk~VA~ftLAV~r~-------~~T~wI~Vv~wGkLAE~aakhLKKGD~V~VeGRL~s 139 (315)
.|+|+|+|+|||++|||++++++|..++.|+||+++. .+++||+|++||++|+.+++||+|||+|+|+|+|++
T Consensus 3 ~mmN~v~l~G~l~~dpe~r~t~~G~~v~~f~la~~~~~~~~~g~~~t~~~~v~~wg~~Ae~~~~~l~KG~~V~V~G~l~~ 82 (116)
T 3vdy_A 3 HMFNQVMLVGRLTKDPDLRYTSAGAAVAHVTLAVNRSFKNASGEIEADYVNCTLWRKTAENTALYCQKGSLVGVSGRIQT 82 (116)
T ss_dssp CCCCCEEEEEEESSCCEEEECTTSCEEEEEEEEEECSSCCSSSCCCEEEEEEEEEHHHHHHHHHHCCTTCEEEEEEEEEE
T ss_pred ceEeEEEEEEEEccCcEEEECCCCCEEEEEEEEEeccccCCCCccccEEEEEEEECHHHHHHHHhCCCCCEEEEEEEEEe
Confidence 5899999999999999999999999999999999862 268999999999999999999999999999999999
Q ss_pred cCCCcC---CeEEEEEEEeEEeeecCCcc
Q 021274 140 DPPAIE---GQANVQVMVHSLNLIEPTSQ 165 (315)
Q Consensus 140 rs~edk---~rs~~eVvVe~I~FV~~k~q 165 (315)
++|+++ .++.++|+|++|+|+++++.
T Consensus 83 ~~~~d~dG~~~~~~ev~a~~i~~l~~~~~ 111 (116)
T 3vdy_A 83 RSYENEEGVNVYVTEVLADTVRFMDPKPR 111 (116)
T ss_dssp EEEC----CCEEEEEEEEEEEEECC----
T ss_pred eEEECCCCCEEEEEEEEEEEEEEccCCCc
Confidence 999965 57889999999999987654
No 3
>3ull_A DNA binding protein; DNA replication, mitochondrion, transit peptide; HET: DNA; 2.40A {Homo sapiens} SCOP: b.40.4.3 PDB: 1s3o_A* 2dud_A
Probab=99.92 E-value=4e-25 Score=185.72 Aligned_cols=101 Identities=12% Similarity=0.207 Sum_probs=87.6
Q ss_pred CCCccEEEEEEEeCCCceEEEcCCCcEEEEEEEEEcC---C------------CCCeEEEEEEec-chHHHHHhhcCCCC
Q 021274 66 VKVANSVNLIGHVDAPVQFQTSSDGKHWAGTVIVQHA---A------------SHSLWIPILFEG-DLAHIASSHLKKDD 129 (315)
Q Consensus 66 p~l~NsV~LIGrLg~DPElr~T~~Gk~VA~ftLAV~r---~------------~~T~wI~Vv~wG-kLAE~aakhLKKGD 129 (315)
++.+|+|+|+|||++|||++++++|..+|.|+||+++ . +.++||+|++|| ++|+.+++||+||+
T Consensus 11 ~~~mN~V~L~GrL~~dPelr~t~~G~~v~~f~lA~~~~~~~~~g~~~~~g~~~~~t~w~~v~~wg~~~Ae~~~~~l~KG~ 90 (132)
T 3ull_A 11 ERSLNRVHLLGRVGQDPVLRQVEGKNPVTIFSLATNEMWRSGDSEVYQLGDVSQKTTWHRISVFRPGLRDVAYQYVKKGS 90 (132)
T ss_dssp CCCEEEEEEEEEECSCCEEECCTTSCCEEEEEEEEEEEECC---------CCEEEEEEEEEEECSTTHHHHHHHHCCTTC
T ss_pred hhcCcEEEEEEEECCCCEEEECCCCCEEEEEEEEEecceeccccccccCCceecceEEEEEEEEchHHHHHHHhhCCCCC
Confidence 4679999999999999999999999999999999986 1 147999999999 59999999999999
Q ss_pred eEEEEEEeEecCCCcC---CeEEEEEEEeEEeeecCCccc
Q 021274 130 HVHIAGQLTADPPAIE---GQANVQVMVHSLNLIEPTSQK 166 (315)
Q Consensus 130 ~V~VeGRL~srs~edk---~rs~~eVvVe~I~FV~~k~q~ 166 (315)
+|+|+|+|++++|+++ .++.++|+|++|.|++++++.
T Consensus 91 ~V~V~G~L~~~~~~d~dG~~r~~~ev~a~~i~~l~~~~k~ 130 (132)
T 3ull_A 91 RIYLEGKIDYGEYMDKNNVRRQATTIIADNIIFLSDQTKE 130 (132)
T ss_dssp EEEEEEEEECCCEESSSSEECCCEEEEEEEEECC------
T ss_pred EEEEEEEEEeeEEECCCCCEEEEEEEEEEEEEEccCCCcc
Confidence 9999999999999865 467899999999999876543
No 4
>3ulp_A Single-strand binding protein; OB-fold, DNA binding, single-stranded DNA, apicoplast, DNA B protein-DNA complex; HET: DNA; 2.10A {Plasmodium falciparum}
Probab=99.92 E-value=1.1e-24 Score=181.16 Aligned_cols=98 Identities=17% Similarity=0.292 Sum_probs=88.1
Q ss_pred CCccEEEEEEEeCCCceEEEcCCCcEEEEEEEEEcC---C-------CCCeEEEEEEec-chHHHHHhhcCCCCeEEEEE
Q 021274 67 KVANSVNLIGHVDAPVQFQTSSDGKHWAGTVIVQHA---A-------SHSLWIPILFEG-DLAHIASSHLKKDDHVHIAG 135 (315)
Q Consensus 67 ~l~NsV~LIGrLg~DPElr~T~~Gk~VA~ftLAV~r---~-------~~T~wI~Vv~wG-kLAE~aakhLKKGD~V~VeG 135 (315)
+++|+|+|+|||++|||++++++|+.+|.|+||+++ . ++++||+|++|| ++|+.+++||+|||+|+|+|
T Consensus 4 ~~~N~v~l~Grl~~dpelr~t~~G~~v~~f~lA~~~~~~~~~~G~~~~~t~~~~v~~wg~~~Ae~~~~~l~KG~~V~V~G 83 (124)
T 3ulp_A 4 KSLNKIMLIGRVGCEPDIKILNGGDKVATFSLATNEFWRDRNTNELKSKTDWHRIVVYDQNIVDLIDKYLRKGRRVYVQG 83 (124)
T ss_dssp CCEEEEEEEEEECSCCEEEECTTSCEEEEEEEEEEEEEECTTTCCEEEEEEEEEEEECCHHHHHHHHHHCCTTCEEEEEE
T ss_pred ccceEEEEEEEECCCcEEEECCCCCEEEEEEEEEccceecccCCcEecccEEEEEEEEEchHHHHHHhhcCCCCEEEEEE
Confidence 689999999999999999999999999999999986 1 158999999999 89999999999999999999
Q ss_pred EeEecCCCc---C--CeEEEEEEEe----EEeeecCCc
Q 021274 136 QLTADPPAI---E--GQANVQVMVH----SLNLIEPTS 164 (315)
Q Consensus 136 RL~srs~ed---k--~rs~~eVvVe----~I~FV~~k~ 164 (315)
+|++++|++ + .++.++|+|+ +|.|+++++
T Consensus 84 ~L~~~~~~d~~~dG~~~~~~ev~a~~~g~~i~~l~~k~ 121 (124)
T 3ulp_A 84 SLHTRKWHTNDMNSQPKQITEIILSYNKGDLIFLDDKR 121 (124)
T ss_dssp EEEEEEECC----CCCEEEEEEEECTTTCEEEECC---
T ss_pred EEEeEEEeCCCCCCCEEEEEEEEEEcCCCcEEEecCcC
Confidence 999999986 4 5788999998 999998765
No 5
>2vw9_A Single-stranded DNA binding protein; DNA replication, single-stranded DNA, single-stranded DNA binding protein, oligonucleotide/oligosaccharide binding fold, OB-fold; 2.30A {Helicobacter pylori}
Probab=99.92 E-value=8.5e-25 Score=184.74 Aligned_cols=98 Identities=21% Similarity=0.268 Sum_probs=88.9
Q ss_pred CccEEEEEEEeCCCceEEEcCCCcEEEEEEEEEcC---C---C---CCeEEEEEEecchHHHHHhhcCCCCeEEEEEEeE
Q 021274 68 VANSVNLIGHVDAPVQFQTSSDGKHWAGTVIVQHA---A---S---HSLWIPILFEGDLAHIASSHLKKDDHVHIAGQLT 138 (315)
Q Consensus 68 l~NsV~LIGrLg~DPElr~T~~Gk~VA~ftLAV~r---~---~---~T~wI~Vv~wGkLAE~aakhLKKGD~V~VeGRL~ 138 (315)
|+|+|+|+|||++|||++++++|.++|.|+||+++ . + +++||+|++||++|+.+++||+|||+|+|+|+|+
T Consensus 1 mmN~V~L~GrL~~dPelr~t~~G~~v~~f~lA~~~~~~~~~G~~~~~t~~~~v~~wg~~Ae~~~~~l~KG~~V~V~G~L~ 80 (134)
T 2vw9_A 1 MFNKVIMVGRLTRNVELKYLPSGSAAATIGLATSRRFKKQDGTLGEEVCFIDARLFGRTAEIANQYLSKGSSVLIEGRLT 80 (134)
T ss_dssp CCCCEEEEEEESSCCEEEECTTSCEEEEEEEEEEEEEECSSSCEEEEEEEEEEEEEHHHHHHHHHHCCTTCEEEEEEEEE
T ss_pred CeeEEEEEEEECCCCEEEECCCCCEEEEEEEEEeCCeECCCCCCccccEEEEEEEEcHHHHHHHHhCCCCCEEEEEEEEE
Confidence 68999999999999999999999999999999996 1 1 5799999999999999999999999999999999
Q ss_pred ecCCCcC---CeEEEEEEEeEEeeecCCcc
Q 021274 139 ADPPAIE---GQANVQVMVHSLNLIEPTSQ 165 (315)
Q Consensus 139 srs~edk---~rs~~eVvVe~I~FV~~k~q 165 (315)
+++|+++ .++.++|+|++|.|++++..
T Consensus 81 ~~~~~dkdG~~r~~~ev~a~~i~~l~~~~~ 110 (134)
T 2vw9_A 81 YESWMDQTGKKNSRHTITADSLQFMDKKSD 110 (134)
T ss_dssp EEEEECTTSCEEEEEEEEEEEEEECCCC--
T ss_pred eeeEECCCCCEEEEEEEEEEEEEEccCCcc
Confidence 9999875 46778999999999987553
No 6
>1z9f_A Single-strand binding protein; TM0604, single stranded DNA-binding protein, structural GENO joint center for structural genomics, JCSG; 2.30A {Thermotoga maritima}
Probab=99.91 E-value=1.7e-24 Score=187.31 Aligned_cols=100 Identities=16% Similarity=0.207 Sum_probs=82.9
Q ss_pred CCccEEEEEEEeCCCceEEEcCCCcEEEEEEEEEcC-C-------CC-CeEEEEEEecchHHHHHhhcCCCCeEEEEEEe
Q 021274 67 KVANSVNLIGHVDAPVQFQTSSDGKHWAGTVIVQHA-A-------SH-SLWIPILFEGDLAHIASSHLKKDDHVHIAGQL 137 (315)
Q Consensus 67 ~l~NsV~LIGrLg~DPElr~T~~Gk~VA~ftLAV~r-~-------~~-T~wI~Vv~wGkLAE~aakhLKKGD~V~VeGRL 137 (315)
-++|.|+|+|||++|||+|++++|..+|.|+||+++ . .. ++||+|++||++|+.+++||+||++|+|+|+|
T Consensus 14 ~~~N~V~LiGrL~~DPelr~t~~G~~va~f~lAv~~r~~~~~~Ge~~~t~~~~v~~wg~~Ae~~~~~l~KG~~V~VeGrL 93 (153)
T 1z9f_A 14 SFFNKIILIGRLVRDPEERYTLSGTPVTTFTIAVDRVPRKNAPDDAQTTDFFRIVTFGRLAEFARTYLTKGRLVLVEGEM 93 (153)
T ss_dssp SCCCCEEEEEEESSCCEEEECC--CEEEEEEEEEEC-----------CEEEEEEEEEHHHHHHHHHHCCTTCEEEEEEEE
T ss_pred cceeEEEEEEEECCCCEEEECCCCCEEEEEEEEEcCCccccCCCCEeeeEEEEEEEECHHHHHHHhhCCCCCEEEEEEEE
Confidence 379999999999999999999999999999999997 2 12 89999999999999999999999999999999
Q ss_pred EecCCCcC---CeEEEEEEEeEEeeecCCccc
Q 021274 138 TADPPAIE---GQANVQVMVHSLNLIEPTSQK 166 (315)
Q Consensus 138 ~srs~edk---~rs~~eVvVe~I~FV~~k~q~ 166 (315)
++++|+++ .++.++|+|++|.|+.++.+.
T Consensus 94 ~~~~~~dkdG~~r~~~eV~a~~i~~l~~~~~~ 125 (153)
T 1z9f_A 94 RMRRWETPTGEKRVSPEVVANVVRFMDRKPAE 125 (153)
T ss_dssp EEEC-------CCCEEEEEEEEEEECC-----
T ss_pred EeceEECCCCCEEEEEEEEEEEEEEccCCCcc
Confidence 99999865 578899999999999876543
No 7
>1qvc_A Single stranded DNA binding protein monomer; beta-barrel; 2.20A {Escherichia coli} SCOP: b.40.4.3 PDB: 1kaw_A 1eyg_A 1sru_A
Probab=99.91 E-value=2.3e-24 Score=184.30 Aligned_cols=100 Identities=20% Similarity=0.314 Sum_probs=91.2
Q ss_pred CCccEEEEEEEeCCCceEEEcCCCcEEEEEEEEEcCC----------CCCeEEEEEEecchHHHHHhhcCCCCeEEEEEE
Q 021274 67 KVANSVNLIGHVDAPVQFQTSSDGKHWAGTVIVQHAA----------SHSLWIPILFEGDLAHIASSHLKKDDHVHIAGQ 136 (315)
Q Consensus 67 ~l~NsV~LIGrLg~DPElr~T~~Gk~VA~ftLAV~r~----------~~T~wI~Vv~wGkLAE~aakhLKKGD~V~VeGR 136 (315)
+++|+|+|+|||++|||++++++|..+|.|+||+++. ++++||+|++|+++|+.+++||+|||+|+|+|+
T Consensus 3 ~~mN~v~L~GrL~~dPelr~t~~G~~v~~f~lA~~~~~~~~~~Ge~~~~t~~~~v~~wg~~Ae~~~~~l~KG~~V~V~G~ 82 (145)
T 1qvc_A 3 RGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVASEYLRKGSQVYIEGQ 82 (145)
T ss_dssp CCEEEEEEEEEESSCCEEECCSSSCCEEEEEEEECCCCSCCSSSSCCCCCEEEEEEEETHHHHHHHHHCCTTCEEEEEEE
T ss_pred CceEEEEEEEEeCCCCEEEECCCCCEEEEEEEEEcCCcccccCCcEecccEEEEEEEehHHHHHHHHhcCCCCEEEEEEE
Confidence 6899999999999999999999999999999999861 248999999999999999999999999999999
Q ss_pred eEecCCCcC---CeEEEEE---EEeEEeeecCCccc
Q 021274 137 LTADPPAIE---GQANVQV---MVHSLNLIEPTSQK 166 (315)
Q Consensus 137 L~srs~edk---~rs~~eV---vVe~I~FV~~k~q~ 166 (315)
|++++|+++ .++.++| +|++|.|+.++...
T Consensus 83 L~~~~~~d~dG~~r~~~ei~a~va~~i~~l~~~~~~ 118 (145)
T 1qvc_A 83 LRTRKWTDQSGQDRYTTEVVVNVGGTMQMLGGRQGG 118 (145)
T ss_dssp EEEEEECSSSSCEEEEEEEECTTCEEEECCCCSCCC
T ss_pred EEeeEEECCCCcEEEEEEEeeeEeCEEEEccCCCcC
Confidence 999999875 4677899 99999999876543
No 8
>1txy_A Primosomal replication protein N; OB fold, dimer, DNA binding protein; 2.00A {Escherichia coli} SCOP: b.40.4.3 PDB: 1woc_A 2pnh_A 4apv_A
Probab=99.91 E-value=6.8e-25 Score=177.76 Aligned_cols=94 Identities=15% Similarity=0.290 Sum_probs=79.0
Q ss_pred CccEEEEEEEeCCCceEEEcCCCcEEEEEEEEEcC-CCCCeE-------EEEEEecchHHHHHhhcCCCCeEEEEEEeEe
Q 021274 68 VANSVNLIGHVDAPVQFQTSSDGKHWAGTVIVQHA-ASHSLW-------IPILFEGDLAHIASSHLKKDDHVHIAGQLTA 139 (315)
Q Consensus 68 l~NsV~LIGrLg~DPElr~T~~Gk~VA~ftLAV~r-~~~T~w-------I~Vv~wGkLAE~aakhLKKGD~V~VeGRL~s 139 (315)
|+|+|+|+|||++|||+|+|++|.++|.|+||++. ..+++| |+|++||++||.+++||+||++|+|+|+|++
T Consensus 1 M~N~v~L~G~l~~dpelR~t~~G~~v~~f~lA~~~~~~~~~~~r~~~~~~~vv~~g~~Ae~~~~~l~KG~~V~V~G~L~~ 80 (104)
T 1txy_A 1 MTNRLVLSGTVCRAPLRKVSPSGIPHCQFVLEHRSVQEEAGFHRQAWCQMPVIVSGHENQAITHSITVGSRITVQGFISC 80 (104)
T ss_dssp CCEEEEEEEEEEEEEEEEECTTSCEEEEEEEEEEEEEEETTEEEEEEEEEEEEEESSTTHHHHTTCCTTCEEEEEEEEEC
T ss_pred CcEEEEEEEEECCCceEEECCCCCEEEEEEEEEeCccccCCceeceeEEEEEEEEhHHHHHHHhhCCCCCEEEEEEEEEe
Confidence 68999999999999999999999999999999975 335667 9999999999999999999999999999999
Q ss_pred cCCCcCCeEEEEEEEeEEeeecC
Q 021274 140 DPPAIEGQANVQVMVHSLNLIEP 162 (315)
Q Consensus 140 rs~edk~rs~~eVvVe~I~FV~~ 162 (315)
+ ...+|+..++|+|++|+|+++
T Consensus 81 ~-~~~~G~~r~~v~~~~i~~l~~ 102 (104)
T 1txy_A 81 H-KAKNGLSKMVLHAEQIELIDS 102 (104)
T ss_dssp ---------CCEEEEEEEEEC--
T ss_pred c-cCCCCCEEEEEEEEEEEECcC
Confidence 9 322355559999999999975
No 9
>3tqy_A Single-stranded DNA-binding protein; DNA replication, transferase; 2.60A {Coxiella burnetii}
Probab=99.91 E-value=5.1e-24 Score=184.93 Aligned_cols=99 Identities=18% Similarity=0.335 Sum_probs=88.6
Q ss_pred CCCccEEEEEEEeCCCceEEEcCCCcEEEEEEEEEcC---CC-------CCeEEEEEEecchHHHHHhhcCCCCeEEEEE
Q 021274 66 VKVANSVNLIGHVDAPVQFQTSSDGKHWAGTVIVQHA---AS-------HSLWIPILFEGDLAHIASSHLKKDDHVHIAG 135 (315)
Q Consensus 66 p~l~NsV~LIGrLg~DPElr~T~~Gk~VA~ftLAV~r---~~-------~T~wI~Vv~wGkLAE~aakhLKKGD~V~VeG 135 (315)
.+.+|+|+|||||++|||++++++|..+|.|+||+++ .. .++||+|++||++|+.+++||+||++|+|+|
T Consensus 5 a~~mN~V~LiGrL~~dPelr~t~~G~~v~~f~lA~~~~~~d~~~Ge~~e~t~~i~vv~wg~~Ae~~~~~l~KG~~V~VeG 84 (158)
T 3tqy_A 5 ARGVNKVILIGNLGQDPEVRYTPNGNAVANVTLATSTTWRDKQTGELQERTEWHRIAFFNRLAEIVGEYLRKGSKIYIEG 84 (158)
T ss_dssp CSCEEEEEEEEEESSSCEEEECTTCCEEEEEEEEEEEEEECTTTCCEEEEEEEEEEEEETHHHHHHHHHCCTTCEEEEEE
T ss_pred hcccCEEEEEEEECCCCEEEECCCCCEEEEEEEEEcCceeccCCCCEeeeeEEEEEEEEhHHHHHHHhhcCCCCEEEEEE
Confidence 3568999999999999999999999999999999986 11 4899999999999999999999999999999
Q ss_pred EeEecCCCcC---CeEEEEEEEeEEeeecCCc
Q 021274 136 QLTADPPAIE---GQANVQVMVHSLNLIEPTS 164 (315)
Q Consensus 136 RL~srs~edk---~rs~~eVvVe~I~FV~~k~ 164 (315)
+|++++|+++ .++.++|+|++|.||+.+.
T Consensus 85 ~L~~~~~~dkdG~~r~~~eV~a~~i~~L~~k~ 116 (158)
T 3tqy_A 85 SLRTRKWQDKNGVDRYTTEIIANEMHMLDNRG 116 (158)
T ss_dssp EEEEEEEECSSSCEEEEEEEEEEEEEECC---
T ss_pred EEEeeeEECCCCCEEEEEEEEEeEEEEccCCc
Confidence 9999999865 4788999999999998765
No 10
>3lgj_A Single-stranded DNA-binding protein; niaid, CAT scratch fever, rochalimaea, LYME disease, ALS collaborative crystallography, DNA replication; 2.50A {Bartonella henselae}
Probab=99.90 E-value=1.1e-23 Score=184.91 Aligned_cols=100 Identities=19% Similarity=0.295 Sum_probs=85.3
Q ss_pred CCccEEEEEEEeCCCceEEEcCCCcEEEEEEEEEcCC----------CCCeEEEEEEecc-hHHHHHhhcCCCCeEEEEE
Q 021274 67 KVANSVNLIGHVDAPVQFQTSSDGKHWAGTVIVQHAA----------SHSLWIPILFEGD-LAHIASSHLKKDDHVHIAG 135 (315)
Q Consensus 67 ~l~NsV~LIGrLg~DPElr~T~~Gk~VA~ftLAV~r~----------~~T~wI~Vv~wGk-LAE~aakhLKKGD~V~VeG 135 (315)
.++|+|+|||||++|||++++++|+.+|.|+||+++. ++++||+|++||+ +|+.+++||+||++|+|+|
T Consensus 21 ~~mNkV~LiGrL~~DPelr~t~~G~~v~~FslAv~~~~~~~~~Ge~~~~t~~i~vv~wg~~lAe~~~~~l~KG~~V~VeG 100 (169)
T 3lgj_A 21 SMLNKVMLIGYLGDDPESKTMTSGAEVVNFRMATFESYMNKNTHQKVEKTEWHSVVVFNPHFAKIALQYLHKGSKVYIEG 100 (169)
T ss_dssp CCEEEEEEEEEESSCCEEEECTTSCEEEEEEEEEEC------------CEEEEEEEECCHHHHHHHHHHCCTTCEEEEEE
T ss_pred cceeEEEEEEEECCCCeEEECCCCCEEEEEEEEEcCceecccCCccccccEEEEEEEeCHHHHHHHHHhCCCCCEEEEEE
Confidence 5799999999999999999999999999999999861 2589999999999 9999999999999999999
Q ss_pred EeEecCCCcC---CeEEEEEEE----eEEeeecCCccc
Q 021274 136 QLTADPPAIE---GQANVQVMV----HSLNLIEPTSQK 166 (315)
Q Consensus 136 RL~srs~edk---~rs~~eVvV----e~I~FV~~k~q~ 166 (315)
+|++++|+++ .++.++|+| ++|.|+++++..
T Consensus 101 rL~~r~~~dkdG~~r~~~eIva~~~~~~i~~L~~k~~~ 138 (169)
T 3lgj_A 101 KLQTRKWQDKNGHDRYTTEIVLPQYKGELHLLDAKKEQ 138 (169)
T ss_dssp EEEEECC--------CEEEEEECTTCCEEEEECC----
T ss_pred EEEEEEEECCCCCEEEEEEEEEEeccCcEEEccCCCcc
Confidence 9999999875 578899988 699999877644
No 11
>1v1q_A Primosomal replication protein N; primosome, DNA replication, DNA binding; 2.1A {Escherichia coli} SCOP: b.40.4.3 PDB: 2ccz_A
Probab=99.90 E-value=3.8e-24 Score=182.35 Aligned_cols=98 Identities=14% Similarity=0.249 Sum_probs=85.6
Q ss_pred CccEEEEEEEeCCCceEEEcCCCcEEEEEEEEEcC----C----CCCeEEEEEEecchHHHHHhhcCCCCeEEEEEEeEe
Q 021274 68 VANSVNLIGHVDAPVQFQTSSDGKHWAGTVIVQHA----A----SHSLWIPILFEGDLAHIASSHLKKDDHVHIAGQLTA 139 (315)
Q Consensus 68 l~NsV~LIGrLg~DPElr~T~~Gk~VA~ftLAV~r----~----~~T~wI~Vv~wGkLAE~aakhLKKGD~V~VeGRL~s 139 (315)
|+|+|+|||||++|||+|||++|.+||.|+||+++ . +.++||+|++||++||.|++||+||++|+|+|+|++
T Consensus 18 M~NkViLiGrL~~DPElRyTpsG~~Va~ftLA~~~~~~~~G~~~~~~~~i~vv~wGk~AE~~~~yl~KGs~V~VeGrL~t 97 (134)
T 1v1q_A 18 MTNRLVLSGTVCRAPLRKVSPSGIPHCQFVLEHRSVQEEAGFHRQAWCQMPVIVSGHENQAITHSITVGSRITVQGFISC 97 (134)
T ss_dssp CCEEEEEEEEEEEEEEEEECTTCCEEEEEEEEEEEEEEETTEEEEEEEEEEEEEESTGGGGGGTTCCTTCEEEEEEEEEE
T ss_pred ceeEEEEEEEECcCCceEECCCCCEEEEEEEEEeCcCcCCCCEecceEEEEEEEEhHHHHHHHHhcCCCCEEEEEEEEEE
Confidence 45999999999999999999999999999999975 1 135799999999999999999999999999999999
Q ss_pred cCCCcCCeEEEEEEEeEEeeecCCccc
Q 021274 140 DPPAIEGQANVQVMVHSLNLIEPTSQK 166 (315)
Q Consensus 140 rs~edk~rs~~eVvVe~I~FV~~k~q~ 166 (315)
++. .+++..|.++|++|+|++++...
T Consensus 98 r~~-k~G~kr~~~~a~~i~~l~~k~~~ 123 (134)
T 1v1q_A 98 HKA-KNGLSKMVLHAEQIELIDSVDKL 123 (134)
T ss_dssp ECT-TTTSCEEEEEEEEEEETTSCSCC
T ss_pred EEC-CCCCEEEEEEEEEEEECcCCCCc
Confidence 853 23666777799999999876543
No 12
>4gs3_A Single-stranded DNA-binding protein; primosome, oligonucleotide/oligosaccharide binding domain, D binding protein; 1.09A {Thermoanaerobacter tengcongensis}
Probab=99.90 E-value=1.3e-23 Score=173.07 Aligned_cols=90 Identities=20% Similarity=0.352 Sum_probs=80.1
Q ss_pred cEEEEEEEeCCCceEEEcCCCcEEEEEEEEEcC-CCCCeEEEEEEecchHHHHHhhcCCCCeEEEEEEeEe-cCCCcC--
Q 021274 70 NSVNLIGHVDAPVQFQTSSDGKHWAGTVIVQHA-ASHSLWIPILFEGDLAHIASSHLKKDDHVHIAGQLTA-DPPAIE-- 145 (315)
Q Consensus 70 NsV~LIGrLg~DPElr~T~~Gk~VA~ftLAV~r-~~~T~wI~Vv~wGkLAE~aakhLKKGD~V~VeGRL~s-rs~edk-- 145 (315)
|+|.|||||++|||++++++|..++.|+|||+| .+.++||+|++|+++||.+..| ||++|+|+|+|++ +.|+++
T Consensus 12 N~V~LiGrl~~dpelr~t~~G~~v~~f~lAV~R~~~~~Dfi~ivvw~klAe~~~~~--kG~~v~v~G~lrsy~~~~~~dG 89 (107)
T 4gs3_A 12 NTVTLVGKVFTPLEFSHELYGEKFFNFILEVPRLSETKDYLPITISNRLFEGMNLE--VGTRVKIEGQLRSYNRKSPEEG 89 (107)
T ss_dssp SCEEEEEEECSCCEEEEEETTEEEEEEEEEEECTTSCEEEEEEEEEGGGSTTCCCC--TTCEEEEEEEEEEEECC-----
T ss_pred CEEEEEEEECCCceEEEecCCcEEEEEEEEeCCCCCCCcEEEEEEEhHHhhHHhhc--CCCEEEEEEEEEecceEECCCC
Confidence 999999999999999999999999999999999 5678999999999999998755 9999999999987 678765
Q ss_pred -CeEEEEEEEeEEeeec
Q 021274 146 -GQANVQVMVHSLNLIE 161 (315)
Q Consensus 146 -~rs~~eVvVe~I~FV~ 161 (315)
.++.++|+|++|+|++
T Consensus 90 ~~R~v~eV~a~~i~fld 106 (107)
T 4gs3_A 90 KNKLILTVFARDISVVP 106 (107)
T ss_dssp ---EEEEEEEEEEEEEC
T ss_pred CEEEEEEEEEEEEEEcc
Confidence 5888999999999986
No 13
>4dam_A Single-stranded DNA-binding protein 1; OB-fold; 1.70A {Streptomyces coelicolor}
Probab=99.89 E-value=2.9e-23 Score=174.94 Aligned_cols=92 Identities=16% Similarity=0.209 Sum_probs=83.6
Q ss_pred CccEEEEEEEeCCCceEEEcCCCcEEEEEEEEEcC-----C------CCCeEEEEEEecchHHHHHhhcCCCCeEEEEEE
Q 021274 68 VANSVNLIGHVDAPVQFQTSSDGKHWAGTVIVQHA-----A------SHSLWIPILFEGDLAHIASSHLKKDDHVHIAGQ 136 (315)
Q Consensus 68 l~NsV~LIGrLg~DPElr~T~~Gk~VA~ftLAV~r-----~------~~T~wI~Vv~wGkLAE~aakhLKKGD~V~VeGR 136 (315)
-+|.|+|||||++|||++++++| .+|.|+||+++ . .+++||+|++||++||.+++||+|||+|+|+|+
T Consensus 14 ~~N~V~LiGrL~~dPelr~t~~G-~v~~fslAv~~~~~d~~~Ge~~d~~t~w~~v~~wg~~Ae~~~~~l~KG~~V~VeGr 92 (128)
T 4dam_A 14 NEIMICAVGNVATTPVFRDLANG-PSVRFRLAVTARYWDREKNAWTDGHTNFFTVWANRQLATNASGSLAVGDPVVVQGR 92 (128)
T ss_dssp CCCEEEEEEEECSCCEEEEETTE-EEEEEEEEEEEEEEETTTTEEEEEEEEEEEEEEEHHHHHHHHHHCCTTCEEEEEEE
T ss_pred ceeEEEEEEEECCCCEEEEcCCC-CEEEEEEEEcCceecccCCceecCCcEEEEEEEEcHHHHHHHHhcCCCCEEEEEEE
Confidence 38999999999999999999999 99999999986 1 158999999999999999999999999999999
Q ss_pred eEecCCCcC---CeEEEEEEEeEEeeec
Q 021274 137 LTADPPAIE---GQANVQVMVHSLNLIE 161 (315)
Q Consensus 137 L~srs~edk---~rs~~eVvVe~I~FV~ 161 (315)
|++++| ++ .++.++|+|++|..--
T Consensus 93 L~~~~~-dkdG~~r~~~ev~a~~vg~dL 119 (128)
T 4dam_A 93 LKVRTD-VREGQSRTSADIDAVAIGHDL 119 (128)
T ss_dssp EEEEEE-EETTEEEEEEEEEEEEEEECT
T ss_pred EEEeEE-cCCCCEEEEEEEEEEEEEecc
Confidence 999999 54 4788999999987543
No 14
>3afp_A Single-stranded DNA-binding protein; OB-fold, quaternary structure and stability, changes on oligomerisation, water-bridges, DNA damage; 2.05A {Mycobacterium leprae} PDB: 3afq_A 1ue1_A 1ue5_A 1ue6_A 1ue7_A 1x3e_A 1x3f_A 1x3g_A 3a5u_A*
Probab=99.89 E-value=4.4e-23 Score=180.64 Aligned_cols=97 Identities=15% Similarity=0.237 Sum_probs=86.2
Q ss_pred CccEEEEEEEeCCCceEEEcCCCcEEEEEEEEEcCC-----------CCCeEEEEEEecchHHHHHhhcCCCCeEEEEEE
Q 021274 68 VANSVNLIGHVDAPVQFQTSSDGKHWAGTVIVQHAA-----------SHSLWIPILFEGDLAHIASSHLKKDDHVHIAGQ 136 (315)
Q Consensus 68 l~NsV~LIGrLg~DPElr~T~~Gk~VA~ftLAV~r~-----------~~T~wI~Vv~wGkLAE~aakhLKKGD~V~VeGR 136 (315)
.+|+|+|||||++|||++++++|+.+|.|+||+++. .+++||+|++|+++||.+++||+|||+|+|+|+
T Consensus 3 ~~N~V~LiG~L~~dPelr~t~~G~~va~f~lAv~~~~~~~~~Ge~~d~~t~~~~v~~wg~~Ae~~~~~l~KG~~V~VeGr 82 (168)
T 3afp_A 3 GDTTITIVGNLTADPELRFTSSGAAVVNFTVASTPRIYDRQSGEWKDGEALFLRCNIWREAAENVAESLTRGARVIVTGR 82 (168)
T ss_dssp CCCEEEEEEEESSSCCCEECTTSCEEEEEEEEECC--------CCCCCCCEEEEEEEEHHHHHHHHHHCCTTCEEEEEEE
T ss_pred ccCEEEEEEEECCCCEEEECCCCCEEEEEEEEEccccccccCCcEecCCcEEEEEEEehHHHHHHHHhCCCCCEEEEEEE
Confidence 379999999999999999999999999999999741 158999999999999999999999999999999
Q ss_pred eEecCCCcC---CeEEEEEEEe----EEeeecCCc
Q 021274 137 LTADPPAIE---GQANVQVMVH----SLNLIEPTS 164 (315)
Q Consensus 137 L~srs~edk---~rs~~eVvVe----~I~FV~~k~ 164 (315)
|++++|+++ .++.++|+|+ +|.|+..+.
T Consensus 83 L~~~~~~dkdG~~r~~~ev~a~~v~~~l~~l~~~~ 117 (168)
T 3afp_A 83 LKQRSFETREGEKRTVVEVEVDEIGPSLRYATAKV 117 (168)
T ss_dssp EEEEEEC-CCSCCEEEEEEEEEEEEECCSSEEEEE
T ss_pred EEeeeEECCCCcEEEEEEEEEEEeecCEEEecccc
Confidence 999999965 5788999777 778886543
No 15
>3pgz_A Single-stranded DNA-binding protein; ssgcid, single-strand binding protein, structural genomics center for infectious disease; 2.10A {Bartonella henselae}
Probab=99.89 E-value=4.5e-23 Score=185.12 Aligned_cols=100 Identities=20% Similarity=0.329 Sum_probs=87.3
Q ss_pred CCccEEEEEEEeCCCceEEEcCCCcEEEEEEEEEcCC----------CCCeEEEEEEecc-hHHHHHhhcCCCCeEEEEE
Q 021274 67 KVANSVNLIGHVDAPVQFQTSSDGKHWAGTVIVQHAA----------SHSLWIPILFEGD-LAHIASSHLKKDDHVHIAG 135 (315)
Q Consensus 67 ~l~NsV~LIGrLg~DPElr~T~~Gk~VA~ftLAV~r~----------~~T~wI~Vv~wGk-LAE~aakhLKKGD~V~VeG 135 (315)
+.+|+|+|||||++|||+|++++|+.+|+|+||+++. ++++||+|++|++ +|+.+++||+||++|+|+|
T Consensus 24 ~~mNkV~LiGrLg~DPElR~t~~G~~Va~FsLAvnr~~kd~~~Ge~~e~Tdwi~Vvawgk~lAe~~~~yL~KGs~V~VeG 103 (193)
T 3pgz_A 24 GSLNKVILIGNLGADPEIRRLNSGDQVANLRIATSESWRDRNTNERKERTEWHNIVIFNENLVKVVEQYLKKGSKIYIEG 103 (193)
T ss_dssp CCEEEEEEEEEESSCCEEEECTTSCEEEEEEEEEEEEECCC-----EEEEEEEEEEECCHHHHHHHHHHCCTTCEEEEEE
T ss_pred hhcCEEEEEEEECCCCeEEECCCCCEEEEEEEEEcCceeccCCCceeeeeEEEEEEEECHHHHHHHHhhcCCCCEEEEEE
Confidence 4579999999999999999999999999999999861 1489999999996 9999999999999999999
Q ss_pred EeEecCCCcC---CeEEEEEEEe----EEeeecCCccc
Q 021274 136 QLTADPPAIE---GQANVQVMVH----SLNLIEPTSQK 166 (315)
Q Consensus 136 RL~srs~edk---~rs~~eVvVe----~I~FV~~k~q~ 166 (315)
+|++++|+++ .++.++|+|+ +|.||+++...
T Consensus 104 rL~trswedkdG~kr~~tEVva~~~~~~i~fL~sk~~~ 141 (193)
T 3pgz_A 104 QLQTRKWQDQNGNDRYTTEIVLQKYRGELQMLDGRAAA 141 (193)
T ss_dssp EEEEEEEECTTSCEEEEEEEEECTTCCEEEECC-----
T ss_pred EEEEEEeECCCCCEEEEEEEEEEeccCceEECcCCCCC
Confidence 9999999875 5788999999 68999877643
No 16
>1eqq_A Single stranded DNA binding protein; beta barrel, protein-DNA complex, replication/RNA complex; HET: 5MU; 3.20A {Escherichia coli} SCOP: b.40.4.3
Probab=99.88 E-value=1.3e-23 Score=185.71 Aligned_cols=99 Identities=20% Similarity=0.321 Sum_probs=88.3
Q ss_pred CCccEEEEEEEeCCCceEEEcCCCcEEEEEEEEEcCC----------CCCeEEEEEEecchHHHHHhhcCCCCeEEEEEE
Q 021274 67 KVANSVNLIGHVDAPVQFQTSSDGKHWAGTVIVQHAA----------SHSLWIPILFEGDLAHIASSHLKKDDHVHIAGQ 136 (315)
Q Consensus 67 ~l~NsV~LIGrLg~DPElr~T~~Gk~VA~ftLAV~r~----------~~T~wI~Vv~wGkLAE~aakhLKKGD~V~VeGR 136 (315)
+++|+|+|||||++|||+|++++|..+|.|+||+++. ++++||+|++||++||.+++||+|||+|+|+|+
T Consensus 4 ~~~N~V~LiGrL~~dPelr~t~~G~~v~~f~LAv~~~~~d~~~Ge~~~~t~~i~vv~wg~~Ae~~~~~l~KG~~V~VeGr 83 (178)
T 1eqq_A 4 RGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVASEYLRKGSQVYIEGQ 83 (178)
T ss_dssp CCEEEEEEEEEESSSCCCCEETTTEECCCCEEEEEECCCCSSSSSCCCEEEEEEEEECHHHHHHHHHHCCTTCEEEECCE
T ss_pred cCeeEEEEEEEECCCCEEEECCCCCEEEEEEEEEcCCeecCCCCceecccEEEEEEEccHHHHHHHHhcCCCCEEEEEEE
Confidence 4789999999999999999999999999999999861 137999999999999999999999999999999
Q ss_pred eEecCCCcC---CeEEEEE---EEeEEeeecCCcc
Q 021274 137 LTADPPAIE---GQANVQV---MVHSLNLIEPTSQ 165 (315)
Q Consensus 137 L~srs~edk---~rs~~eV---vVe~I~FV~~k~q 165 (315)
|++++|+++ .++.++| +|++|.|+..+..
T Consensus 84 L~~r~~~dkdG~~r~~~eI~v~va~~i~~l~~~~~ 118 (178)
T 1eqq_A 84 LRTRKWTDQSGQDRYTTEVVVNVGGTMQMLGGRQG 118 (178)
T ss_dssp EEEEEEECSSSEEEEEEEEECSSSCCEECSCC---
T ss_pred EEeeeEECCCCCEEEEEEEeeeecCeEEEccccCC
Confidence 999999875 4677899 8999999986543
No 17
>3fhw_A Primosomal replication protein N; PRIB BPR162 X-RAY NESG, structural genomics, PSI-2, protein initiative; 1.90A {Bordetella parapertussis} PDB: 3dm4_A 3klw_A
Probab=99.88 E-value=1.1e-22 Score=169.25 Aligned_cols=92 Identities=17% Similarity=0.208 Sum_probs=81.8
Q ss_pred ccEEEEEEEeCCCceEEEcCCCcEEEEEEEEEcC----C--C--CCeEEEEEEecchHHHHHhhcCCCCeEEEEEEeEec
Q 021274 69 ANSVNLIGHVDAPVQFQTSSDGKHWAGTVIVQHA----A--S--HSLWIPILFEGDLAHIASSHLKKDDHVHIAGQLTAD 140 (315)
Q Consensus 69 ~NsV~LIGrLg~DPElr~T~~Gk~VA~ftLAV~r----~--~--~T~wI~Vv~wGkLAE~aakhLKKGD~V~VeGRL~sr 140 (315)
||+|+|+|||++|||+|||++|.++|.|+||+++ . . .++||+|++||++||.+ +||+||++|+|+|+|+++
T Consensus 1 MNkviL~GrL~~dPelRyTpsG~~V~~f~LA~~~~~~~~g~~r~~~~~i~vv~~Gk~AE~~-~~l~kGs~V~VeGrL~tr 79 (115)
T 3fhw_A 1 MNTLELSARVLECGAMRHTPAGLPALELLLVHESEVVEAGHPRRVELTISAVALGDLALLL-ADTPLGTEMQVQGFLAPA 79 (115)
T ss_dssp CEEEEEEEEEEEECCCEECTTSCEEEEEEEEEEEECCCCC--CEEEEEEEEEEETHHHHHH-TTCCTTCEEEEEEEEEES
T ss_pred CCEEEEEEEECcCcceEECCCCCEEEEEEEEEcceeecCCCeeeeeEEEEEEEEhHHHHhh-hccCCCCEEEEEEEEEEC
Confidence 6999999999999999999999999999999975 1 1 24669999999999998 999999999999999999
Q ss_pred CCCcCCeEEEEEEEeEEeeecCCc
Q 021274 141 PPAIEGQANVQVMVHSLNLIEPTS 164 (315)
Q Consensus 141 s~edk~rs~~eVvVe~I~FV~~k~ 164 (315)
+- ++ +..+|.|++|+|+++..
T Consensus 80 s~--~G-~kl~l~a~~Ie~l~~~~ 100 (115)
T 3fhw_A 80 RK--DS-VKVKLHLQQARRIAGSM 100 (115)
T ss_dssp ST--TC-SSEEEEEEEEEECCCSC
T ss_pred CC--CC-CEEEEEEEEEEEcCCCC
Confidence 63 34 67899999999997654
No 18
>3k7u_C MP18 RNA editing complex protein; OB-fold, RNA-editing proteins, kinetoplastids, system, RNA binding protein; 2.10A {Trypanosoma brucei} PDB: 3k80_D 3stb_D
Probab=99.88 E-value=1.8e-22 Score=174.36 Aligned_cols=97 Identities=16% Similarity=0.146 Sum_probs=83.2
Q ss_pred CCccEEEEEEEeCCCceEEEcCCCcEEEEEEEEEcCC----------CCCeEEEEEEecch-HHHHHhhcCCCCeEEEEE
Q 021274 67 KVANSVNLIGHVDAPVQFQTSSDGKHWAGTVIVQHAA----------SHSLWIPILFEGDL-AHIASSHLKKDDHVHIAG 135 (315)
Q Consensus 67 ~l~NsV~LIGrLg~DPElr~T~~Gk~VA~ftLAV~r~----------~~T~wI~Vv~wGkL-AE~aakhLKKGD~V~VeG 135 (315)
..+|+|+|||||++||| +++ +|+.+|.|+||+++. ++++||+|++||++ ||.|++||+||++|+|+|
T Consensus 4 ~~~NkV~LiGrLg~DPe-r~t-~G~~va~FslAv~~~~~~~~Ge~~~~~t~w~~vv~wgk~lAe~~~~yl~KG~~V~VeG 81 (148)
T 3k7u_C 4 KSVNSVTLVGVVHDIQS-GFV-YEDAVTQFTLTTTSIDTTHPTQEVVVEKDHHTIRCFGELFSAEVKQKVKEGNVVCVNG 81 (148)
T ss_dssp -CCCCEEEEEEEEEEEE-EES-SSSEEEEEEEEEECC-----------CEEEEEEEEESHHHHHHHHHHCCTTCEEEEEE
T ss_pred ccCcEEEEEEEeccCCE-eee-CCcEEEEEEEEECCceecCCCCEEccccEEEEEEEECcHHHHHHHhhCCCCCEEEEEE
Confidence 35899999999999999 999 999999999999961 36899999999997 999999999999999999
Q ss_pred EeEecCCCcC---CeEEEEEEEe-----EEeeecCCcc
Q 021274 136 QLTADPPAIE---GQANVQVMVH-----SLNLIEPTSQ 165 (315)
Q Consensus 136 RL~srs~edk---~rs~~eVvVe-----~I~FV~~k~q 165 (315)
+|++++|+++ .++.++|++. .+.+|.....
T Consensus 82 rL~~r~~~dkdG~kr~~teVi~v~~~~g~~~ll~~~r~ 119 (148)
T 3k7u_C 82 RLRLSPQLEPSCNKHFYFPYIQVQPPHGQVAVIHGDRR 119 (148)
T ss_dssp EEEECCCSCCC-----CCEEEEECTTTCEEEEEECCC-
T ss_pred EEEeeeeECCCCCEEEEEEEEEEecCCCeEEEccCCCC
Confidence 9999999876 4677888864 5889976543
No 19
>3k8a_A Putative primosomal replication protein; beta-barrel, OB-fold, DNA binding protein; 2.70A {Neisseria gonorrhoeae fa 1090}
Probab=99.87 E-value=1.4e-22 Score=165.23 Aligned_cols=87 Identities=14% Similarity=0.196 Sum_probs=77.6
Q ss_pred cEEEEEEEeCCCceEEEcCCCcEEEEEEEEEcC----CC---C-CeEEEEEEecchHHHHHhhcCCCCeEEEEEEeEecC
Q 021274 70 NSVNLIGHVDAPVQFQTSSDGKHWAGTVIVQHA----AS---H-SLWIPILFEGDLAHIASSHLKKDDHVHIAGQLTADP 141 (315)
Q Consensus 70 NsV~LIGrLg~DPElr~T~~Gk~VA~ftLAV~r----~~---~-T~wI~Vv~wGkLAE~aakhLKKGD~V~VeGRL~srs 141 (315)
|+|+|+|||++|||+|||++|.++|.|+||+++ .. + ++||+|++||++|| +. +|+||++|+|+|+|++++
T Consensus 8 Nkv~LiG~L~~dPelRytp~G~~v~~f~lA~~~~~~~~g~~~~~~~~i~vv~~gk~Ae-~~-~l~KG~~v~veGrL~~rs 85 (103)
T 3k8a_A 8 NLVSLAALIEKAFPIRYTPAGIPVLDIILKHESWQEENGQQCLVQLEIPARILGRQAE-EW-QYRQGDCATVEGFLAQKS 85 (103)
T ss_dssp EEEEEEEEEEEECCCEECTTSCEEEEEEEEEEEEEEETTEEEEEEEEEEEEEEHHHHH-HS-TTCTTCEEEEEEEEEESS
T ss_pred cEEEEEEEECCCCceEECCCCCEEEEEEEEEcccCccCCCEEEeeEEEEEEEEhHHhh-hh-ccCCCCEEEEEEEEEECc
Confidence 999999999999999999999999999999976 11 2 45699999999999 65 599999999999999999
Q ss_pred CCcCCeEEEEEEEeEEeeec
Q 021274 142 PAIEGQANVQVMVHSLNLIE 161 (315)
Q Consensus 142 ~edk~rs~~eVvVe~I~FV~ 161 (315)
|. ++ ...+.+++|+|++
T Consensus 86 ~~--~~-~lvlhi~~i~~i~ 102 (103)
T 3k8a_A 86 RR--SL-MPMLRIQNIKEYK 102 (103)
T ss_dssp SS--CC-CEEEEEEEEEECC
T ss_pred cC--Cc-cEEEEEEEEEEcC
Confidence 93 34 8889999999985
No 20
>3k81_C MP18 RNA editing complex protein; krepa6, single domain antibody, immune system, RNA BIND protein; 3.40A {Trypanosoma brucei}
Probab=99.87 E-value=2.2e-22 Score=176.75 Aligned_cols=99 Identities=17% Similarity=0.153 Sum_probs=82.5
Q ss_pred CCCccEEEEEEEeCCCceEEEcCCCcEEEEEEEEEcC-------C---CCCeEEEEEEecch-HHHHHhhcCCCCeEEEE
Q 021274 66 VKVANSVNLIGHVDAPVQFQTSSDGKHWAGTVIVQHA-------A---SHSLWIPILFEGDL-AHIASSHLKKDDHVHIA 134 (315)
Q Consensus 66 p~l~NsV~LIGrLg~DPElr~T~~Gk~VA~ftLAV~r-------~---~~T~wI~Vv~wGkL-AE~aakhLKKGD~V~Ve 134 (315)
...+|+|+|||||++|||+|+++ ..||.|+||+++ . .+++||+|++||++ ||+|++||+||++|+|+
T Consensus 19 a~smNkViLiGrLg~DPElR~t~--~~Va~fsLAt~~r~~~~~~ge~~~~Tdw~~Vv~wgk~lAE~~~~yL~KGs~V~Ve 96 (164)
T 3k81_C 19 CKSVNSVTLVGVVHDIQSGFVYE--DAVTQFTLTTTSIDTTHPTQEVVVEKDHHTIRCFGELFSAEVKQKVKEGNVVCVN 96 (164)
T ss_dssp -CCEEEEEEEEEEECCCCEESSS--CEECCEEEEECCC--------CCCCCEEEEEEECCHHHHHHHHHHCCTTCEEEEC
T ss_pred hcCCcEEEEEEEeccCCEEEEcC--ccEEEEEEEEcCceeeCCCCcCccceEEEEEEEECCHHHHHHHhhcCCCCEEEEE
Confidence 56699999999999999999998 899999999993 1 35899999999999 99999999999999999
Q ss_pred EEeEecCCCcC---CeE-EEEEEEe----EEeeecCCccc
Q 021274 135 GQLTADPPAIE---GQA-NVQVMVH----SLNLIEPTSQK 166 (315)
Q Consensus 135 GRL~srs~edk---~rs-~~eVvVe----~I~FV~~k~q~ 166 (315)
|+|++++|+|+ +++ ...|+|. .+.+|+.....
T Consensus 97 GrL~tr~w~D~~g~k~~~~~~i~V~~~~g~l~~L~~~r~~ 136 (164)
T 3k81_C 97 GRLRLSPQLEPSCNKHFYFPYIQVQPPHGQVAVIHGDRRT 136 (164)
T ss_dssp CEEEEECCCCSSCSCCCCEEEEEECTTTCCEEEECC----
T ss_pred EEEEeeeEEcCCCCEEEEEEEEEEeCCCCEEEEecCCCCC
Confidence 99999999886 233 3455565 78899866543
No 21
>3eiv_A Single-stranded DNA-binding protein 2; DNA damage, DNA repair, DNA replication, phosphoprotein; 2.14A {Streptomyces coelicolor}
Probab=99.87 E-value=8.2e-22 Score=177.67 Aligned_cols=95 Identities=12% Similarity=0.147 Sum_probs=82.6
Q ss_pred ccEEEEEEEeCCCceEEEcCCCcEEEEEEEEEcC-----C------CCCeEEEEEEecchHHHHHhhcCCCCeEEEEEEe
Q 021274 69 ANSVNLIGHVDAPVQFQTSSDGKHWAGTVIVQHA-----A------SHSLWIPILFEGDLAHIASSHLKKDDHVHIAGQL 137 (315)
Q Consensus 69 ~NsV~LIGrLg~DPElr~T~~Gk~VA~ftLAV~r-----~------~~T~wI~Vv~wGkLAE~aakhLKKGD~V~VeGRL 137 (315)
+|.|+|||||++|||+|++++|+.+|+|+||+++ . .+++||+|++|+++||.+++||+|||+|+|+|+|
T Consensus 4 ~N~V~LiGrL~~DPElR~T~~G~~Va~FsLAvn~R~~d~~~Ge~~d~~T~wi~VvawgklAE~v~~~L~KG~~V~VeGrL 83 (199)
T 3eiv_A 4 ETVITVVGNLVDDPELRFTPSGAAVAKFRVASTPRTFDRQTNEWKDGESLFLTCSVWRQAAENVAESLQRGMRVIVQGRL 83 (199)
T ss_dssp CCEEEEEEEESSCCEEEECTTCCEEEEEEEEECC-----------CCCCEEEEEEEETHHHHHHHHHCCTTCEEEEEEEE
T ss_pred ccEEEEEEEECCCCeEEECCCCCEEEEEEEEEcCcccccCCCcEecCccEEEEEEEEhHHHHHHHHhcCCCCEEEEEEEE
Confidence 6999999999999999999999999999999973 1 2689999999999999999999999999999999
Q ss_pred EecCCCcC---CeEEEEEEEeEEeeecCC
Q 021274 138 TADPPAIE---GQANVQVMVHSLNLIEPT 163 (315)
Q Consensus 138 ~srs~edk---~rs~~eVvVe~I~FV~~k 163 (315)
++++|+++ .++.++|+|++|..--..
T Consensus 84 ~~rswedkdG~kr~~~eVvA~~Ig~dL~~ 112 (199)
T 3eiv_A 84 KQRSYEDREGVKRTVYELDVDEVGASLRS 112 (199)
T ss_dssp EEEC--------CCEEEEEEEEEEEECSS
T ss_pred EeeEEECCCCCEEEEEEEEEEEEeccccc
Confidence 99999975 688999999999864333
No 22
>2fxq_A Single-strand binding protein; strand beta-sheet extended loops, DNA binding protein; 1.85A {Thermus aquaticus} PDB: 2ihe_A 2cwa_A 2ihf_A
Probab=99.87 E-value=6.6e-22 Score=182.62 Aligned_cols=99 Identities=17% Similarity=0.214 Sum_probs=87.6
Q ss_pred CCccEEEEEEEeCCCceEEEcCCCcEEEEEEEEEcCC------CCCeEEEEEEecchHHHHHhhcCCCCeEEEEEEeEec
Q 021274 67 KVANSVNLIGHVDAPVQFQTSSDGKHWAGTVIVQHAA------SHSLWIPILFEGDLAHIASSHLKKDDHVHIAGQLTAD 140 (315)
Q Consensus 67 ~l~NsV~LIGrLg~DPElr~T~~Gk~VA~ftLAV~r~------~~T~wI~Vv~wGkLAE~aakhLKKGD~V~VeGRL~sr 140 (315)
+++|+|+|+|||++|||++++++|+.+|.|+||+++. ++++||+|++||++|+.++ ||+|||+|+|+|+|+++
T Consensus 126 ~~~N~v~l~G~l~~dpe~r~t~~G~~v~~f~lAv~~~~~g~~~~~t~~~~v~~wg~~Ae~~~-~l~KG~~V~V~G~l~~~ 204 (264)
T 2fxq_A 126 RALNQVILMGNLTRDPDLRYTPQGTAVVRLGLAVNERRRGQEEERTHFLEVQAWRELAEWAS-ELRKGDGLLVIGRLVND 204 (264)
T ss_dssp CCCEEEEEEEEESSCCCCEECTTCCEEEEEEEEEECCC-------EEEEEEEEEHHHHHHHT-TCCTTCEEEEEEEEEEE
T ss_pred cceEEEEEEEEECCCCEEEECCCCCEEEEEEEEEcCCcCCCCccccEEEEEEEEChHHHHhh-hcCCCCEEEEEEEEEee
Confidence 4689999999999999999999999999999999973 2589999999999999999 99999999999999999
Q ss_pred CCCcC---CeEEEEEEEeEEeeecCCccc
Q 021274 141 PPAIE---GQANVQVMVHSLNLIEPTSQK 166 (315)
Q Consensus 141 s~edk---~rs~~eVvVe~I~FV~~k~q~ 166 (315)
+|+++ .++.++|+|++|.|++++...
T Consensus 205 ~~~~~dG~~~~~~ev~a~~i~~l~~~~~~ 233 (264)
T 2fxq_A 205 SWTSSSGERRFQTRVEALRLERPTRGPAQ 233 (264)
T ss_dssp EEECTTSCEEEEEEEEEEEEECCCC----
T ss_pred EEECCCCCEEEEEEEEEEEEEECcccccc
Confidence 99865 467799999999999876543
No 23
>1se8_A Single-strand binding protein; DNA binding protein; 1.80A {Deinococcus radiodurans} SCOP: b.40.4.3
Probab=99.86 E-value=2.5e-21 Score=183.14 Aligned_cols=98 Identities=16% Similarity=0.197 Sum_probs=88.7
Q ss_pred CCccEEEEEEEeCCCceEEEcCCCcEEEEEEEEEcCC---------CCCeEEEEEEecchHHHHHhh-cCCCCeEEEEEE
Q 021274 67 KVANSVNLIGHVDAPVQFQTSSDGKHWAGTVIVQHAA---------SHSLWIPILFEGDLAHIASSH-LKKDDHVHIAGQ 136 (315)
Q Consensus 67 ~l~NsV~LIGrLg~DPElr~T~~Gk~VA~ftLAV~r~---------~~T~wI~Vv~wGkLAE~aakh-LKKGD~V~VeGR 136 (315)
+++|+|+|+|||++|||++++++|..+|.|+||+++. +.++||+|++||++||.+++| |+||++|+|+|+
T Consensus 3 ~~mN~V~LiGrL~~dPelr~t~~G~~v~~f~LAv~r~~~~~~G~~~~~t~~i~vv~~g~~Ae~~~~~~l~KG~~V~VeG~ 82 (301)
T 1se8_A 3 RGMNHVYLIGALARDPELRYTGNGMAVFEATVAGEDRVIGNDGRERNLPWYHRVSILGKPAEWQAERNLKGGDAVVVEGT 82 (301)
T ss_dssp CCEEEEEEEEEESSCCEEEECTTSCEEEEEEEEEEEEC-------CEEEEEEEEEEESHHHHHHHHTCCCTTCEEEEEEE
T ss_pred CceeEEEEEEEECCCceEEECCCCCEEEEEEEEEcCceECCCCCEecceEEEEEEEEcHHHHHHHhhCCCCCCEEEEEEE
Confidence 4689999999999999999999999999999999851 137899999999999999999 999999999999
Q ss_pred eEecCCCcC---CeEEEEEEEeEEeeecCCc
Q 021274 137 LTADPPAIE---GQANVQVMVHSLNLIEPTS 164 (315)
Q Consensus 137 L~srs~edk---~rs~~eVvVe~I~FV~~k~ 164 (315)
|++++|+++ .++.++|+|++|.|++.+.
T Consensus 83 L~~r~~~dkdG~~r~~~ev~a~~i~~l~~~~ 113 (301)
T 1se8_A 83 LEYRQWEAPEGGKRSAVNVKALRMEQLGTQP 113 (301)
T ss_dssp EEEEEEC-----CEEEEEEEEEEEEECSSCC
T ss_pred EEeeeEECCCCCEEEEEEEEEeEEEEeeccc
Confidence 999999875 5788999999999998765
No 24
>2fxq_A Single-strand binding protein; strand beta-sheet extended loops, DNA binding protein; 1.85A {Thermus aquaticus} PDB: 2ihe_A 2cwa_A 2ihf_A
Probab=99.86 E-value=1.3e-21 Score=180.77 Aligned_cols=98 Identities=18% Similarity=0.218 Sum_probs=84.0
Q ss_pred CCccEEEEEEEeCCCceEEEcCCCcEEEEEEEEEcCC---------CCCeEEEEEEecchHHHHHhhcCCCCeEEEEEEe
Q 021274 67 KVANSVNLIGHVDAPVQFQTSSDGKHWAGTVIVQHAA---------SHSLWIPILFEGDLAHIASSHLKKDDHVHIAGQL 137 (315)
Q Consensus 67 ~l~NsV~LIGrLg~DPElr~T~~Gk~VA~ftLAV~r~---------~~T~wI~Vv~wGkLAE~aakhLKKGD~V~VeGRL 137 (315)
.++|+|+|+|||++|||+|++++|..+|.|+||+++. +.++||+|++||++|+.+++||+||++|+|+|+|
T Consensus 3 ~~~N~v~L~G~l~~dpelr~t~~G~~v~~f~lA~~~~~~~~~G~~~~~t~~~~v~~~g~~Ae~~~~~l~KG~~V~V~G~L 82 (264)
T 2fxq_A 3 RGLNQVFLIGTLTARPDMRYTPGGLAILDLNLAGQDAFTDESGQEREVPWYHRVRLLGRQAEMWGDLLEKGQLIFVEGRL 82 (264)
T ss_dssp CCEEEEEEEEEESSCCCCEECTTCCEEEEEEEEEEEEEECTTSCEEEEEEEEEEEEETHHHHHHTTTCCTTCEEEEEEEE
T ss_pred CceeEEEEEEEeccCCeEEECCCCCEEEEEEEEECCcEECCCCCEecccEEEEEEEEchHHHHHHHhCCCCCEEEEEEEE
Confidence 3689999999999999999999999999999999861 1378999999999999999999999999999999
Q ss_pred EecCCCcC--CeEEEEEEEeEEeeecCCc
Q 021274 138 TADPPAIE--GQANVQVMVHSLNLIEPTS 164 (315)
Q Consensus 138 ~srs~edk--~rs~~eVvVe~I~FV~~k~ 164 (315)
++++|+++ .++.++|+|++|.|++.+.
T Consensus 83 ~~~~~~~dG~~r~~~ev~a~~i~~l~~~~ 111 (264)
T 2fxq_A 83 EYRQWEKDGEKKSEVQVRAEFIDPLEGRG 111 (264)
T ss_dssp EEC---------CCEEEEEEEEEECCCC-
T ss_pred EeeeEEeCCEEEEEEEEEEEEEEECcCCc
Confidence 99999865 5677899999999998765
No 25
>1se8_A Single-strand binding protein; DNA binding protein; 1.80A {Deinococcus radiodurans} SCOP: b.40.4.3
Probab=99.84 E-value=1.2e-20 Score=178.57 Aligned_cols=98 Identities=18% Similarity=0.214 Sum_probs=86.7
Q ss_pred CCccEEEEEEEeCCCceEEEcCCCcEEEEEEEEEcC---C------CCCeEEEEEEecchHHHHHhhcCCCCeEEEEEEe
Q 021274 67 KVANSVNLIGHVDAPVQFQTSSDGKHWAGTVIVQHA---A------SHSLWIPILFEGDLAHIASSHLKKDDHVHIAGQL 137 (315)
Q Consensus 67 ~l~NsV~LIGrLg~DPElr~T~~Gk~VA~ftLAV~r---~------~~T~wI~Vv~wGkLAE~aakhLKKGD~V~VeGRL 137 (315)
+|+|+|+|+|||++|||++++++|..+|.|+||+++ . ++++||+|++||++|+.+++ |+|||+|+|+|+|
T Consensus 127 ~mmN~V~L~GrL~~dPelr~t~~G~~v~~f~lAv~~~~~d~~Ge~~~~t~~i~vvawg~~Ae~~~~-l~KG~~V~V~GrL 205 (301)
T 1se8_A 127 GAMNEVLVLGNVTRDPEIRYTPAGDAVLSLSIAVNENYQDRQGQRQEKVHYIDATLWRDLAENMKE-LRKGDPVMIMGRL 205 (301)
T ss_dssp TCEEEEEEEEEECSCCEEEECTTCCEEEEEEEEEEEEEECTTSCEEEEEEEEEEEEETHHHHHHTT-CCTTCEEEEEEEE
T ss_pred cceeEEEEEEEECcCCEEEECCCCCEEEEEEEEEcCceEcCCCCcccccEEEEEEECCHHHHHHHh-cCCCCEEEEEEEE
Confidence 579999999999999999999999999999999986 1 14789999999999999999 9999999999999
Q ss_pred EecCCCcC---CeEEEEEEEeEEeeecCCcc
Q 021274 138 TADPPAIE---GQANVQVMVHSLNLIEPTSQ 165 (315)
Q Consensus 138 ~srs~edk---~rs~~eVvVe~I~FV~~k~q 165 (315)
++++|+++ .++.++|+|++|.|+..+..
T Consensus 206 ~~~~y~dkdG~~r~~~ev~a~~i~~l~~k~~ 236 (301)
T 1se8_A 206 VNEGWTDKDGNKRNSTRVEATRVEALARGAG 236 (301)
T ss_dssp EEEECC------CEEEEEEEEEEEECCC---
T ss_pred eeeeEECCCCcEEEEEEEEEEEEEEeccCCC
Confidence 99999875 57889999999999986553
No 26
>3en2_A Probable primosomal replication protein N; PRIB RSR213C NESG X-RAY Q8XZT7 Q8XZT7_ralso, structural genomics, PSI-2; 2.30A {Ralstonia solanacearum}
Probab=99.80 E-value=5.8e-20 Score=149.83 Aligned_cols=76 Identities=13% Similarity=0.181 Sum_probs=66.0
Q ss_pred ccEEEEEEEeCCCceEEEcCCCcEEEEEEEEEcC----CC---C-CeEEEEEEecchHHHHHhhcCCCCeEEEEEEeEec
Q 021274 69 ANSVNLIGHVDAPVQFQTSSDGKHWAGTVIVQHA----AS---H-SLWIPILFEGDLAHIASSHLKKDDHVHIAGQLTAD 140 (315)
Q Consensus 69 ~NsV~LIGrLg~DPElr~T~~Gk~VA~ftLAV~r----~~---~-T~wI~Vv~wGkLAE~aakhLKKGD~V~VeGRL~sr 140 (315)
||+|+|+|||++|||+|||++|.++|.|+||+++ .. + .+||+|++||++||.+++ ++||++|.|+|+|+++
T Consensus 2 MN~v~L~GrLt~dPelRyTpsG~~V~~f~LA~~s~~~e~g~~r~~~f~i~vv~wGk~AE~~~~-~~kGs~V~VeGrL~tr 80 (101)
T 3en2_A 2 INRLQLVATLVEREVMRYTPAGVPIVNCLLSYSGQAMEAQAARQVEFSIEALGAGKMASVLDR-IAPGTVLECVGFLARK 80 (101)
T ss_dssp CCCEEEEEEEEEECCCEECTTCCEEEEEEEEEEEEEECC--EEEEEEEEEEEEETHHHHHHTT-SCTTCEEEEEEEEEEC
T ss_pred cCEEEEEEEECcCccEEECCCCCEEEEEEEEEcceEecCCCcEeeeEEEEEEEEhHHHHHHhh-cCCCCEEEEEEEEEeC
Confidence 7999999999999999999999999999999986 11 2 356999999999999997 6799999999999999
Q ss_pred CCCcC
Q 021274 141 PPAIE 145 (315)
Q Consensus 141 s~edk 145 (315)
+|..+
T Consensus 81 s~~s~ 85 (101)
T 3en2_A 81 HRSSK 85 (101)
T ss_dssp C----
T ss_pred cCCCC
Confidence 99654
No 27
>4dni_A Fusion protein of RNA-editing complex proteins MP MP18; krepa3, krepa6, editosome, protein/RNA binding, protein BIND binding protein; 2.55A {Trypanosoma brucei}
Probab=99.79 E-value=1.9e-19 Score=167.67 Aligned_cols=84 Identities=20% Similarity=0.220 Sum_probs=74.9
Q ss_pred ccEEEEEEEeCCCceEEEcCCCcEEEEEEEEEcC---C----C---CCeEEEEEEecch--HHHHHhhcCCCCeEEEEEE
Q 021274 69 ANSVNLIGHVDAPVQFQTSSDGKHWAGTVIVQHA---A----S---HSLWIPILFEGDL--AHIASSHLKKDDHVHIAGQ 136 (315)
Q Consensus 69 ~NsV~LIGrLg~DPElr~T~~Gk~VA~ftLAV~r---~----~---~T~wI~Vv~wGkL--AE~aakhLKKGD~V~VeGR 136 (315)
+|+|+||||| +|||+|+++ |+.+|.|+||+++ . + +++||+|++||++ || +++||+||++|+|+||
T Consensus 146 lNkV~LiGrL-~DPElR~t~-G~~Va~FslAv~~~~~~~~~~e~~~~Tdw~~Vv~wgk~~~AE-i~~~L~KG~~V~VeGr 222 (257)
T 4dni_A 146 VNSVTLVGVV-HDIQSGFVY-EDAVTQFTLTTTSIDTTHPTQEVVVEKDHHTIRCFGELFSAE-VKQKVKEGNVVCVNGR 222 (257)
T ss_dssp EEEEEEEEEE-EEEEEEEET-TEEEEEEEEEEEEEECCCTTCSCEEEEEEEEEEEESHHHHHH-HHHHCCTTCEEEEEEE
T ss_pred cCEEEEEEEc-CCCEEEEeC-CcEEEEEEEEECCCccCCCCceEccceEEEEEEEECCccHHH-HHhhCCCCCEEEEEEE
Confidence 7999999999 999999999 9999999999986 1 1 5899999999999 99 8889999999999999
Q ss_pred eEecCCCcC---CeEEEE-EEEe
Q 021274 137 LTADPPAIE---GQANVQ-VMVH 155 (315)
Q Consensus 137 L~srs~edk---~rs~~e-VvVe 155 (315)
|++++|+|+ +++.++ |.|+
T Consensus 223 L~tr~~~D~~G~kr~~~~vI~V~ 245 (257)
T 4dni_A 223 LRLSPQLEPSCNKHFYFPYIQVQ 245 (257)
T ss_dssp EEEEEEECSSSSCEEEEEEEEEC
T ss_pred EEeeeEEcCCCCEEEEEEEEEEE
Confidence 999999886 456665 4454
No 28
>4dni_A Fusion protein of RNA-editing complex proteins MP MP18; krepa3, krepa6, editosome, protein/RNA binding, protein BIND binding protein; 2.55A {Trypanosoma brucei}
Probab=99.72 E-value=1.3e-17 Score=155.36 Aligned_cols=94 Identities=11% Similarity=0.044 Sum_probs=79.6
Q ss_pred CCCCccEEEEEEEeCCCceEEEcCCCcEEEEEEEEEcCC-----C-CCeEEEEEEec-chHHHHHhhcCCCCeEEEEEEe
Q 021274 65 QVKVANSVNLIGHVDAPVQFQTSSDGKHWAGTVIVQHAA-----S-HSLWIPILFEG-DLAHIASSHLKKDDHVHIAGQL 137 (315)
Q Consensus 65 qp~l~NsV~LIGrLg~DPElr~T~~Gk~VA~ftLAV~r~-----~-~T~wI~Vv~wG-kLAE~aakhLKKGD~V~VeGRL 137 (315)
.-+.+|+|+|||||++| |+|||++|. ++.|+||+... + .++|+.|++|| ++||.|.+||+||++|+|+|||
T Consensus 26 ~~r~~N~viLiGrLtrd-ElRyT~~g~-~a~~~lav~~~~~~~ge~~~df~~vv~wg~k~AE~~~~yl~kG~~V~VeGrL 103 (257)
T 4dni_A 26 HWRCVNHCVMLGVVQNI-QEGFVFEDK-VLQFTLITDFEGPSPGDPDKDFHTVRVFDSDYSSRVKEQLRDGEWFLVTGRL 103 (257)
T ss_dssp TSCCSEEEEEEEEEEEE-EEEEETTEE-EEEEEEEEECCCCCSSCCCEEEEEEEECSHHHHHHHHHHCCTTCEEEEEEEE
T ss_pred hhhcCcEEEEEEEEece-EEEECCCCC-EEEEEEEEEecCCCCCCCcccEEEEEEECCHHHHHHHHhccCCCEEEEEEEE
Confidence 34789999999999999 999999984 66677777651 2 46788889999 9999999999999999999999
Q ss_pred EecCCCcC---CeEEEEEEEeEEeeecC
Q 021274 138 TADPPAIE---GQANVQVMVHSLNLIEP 162 (315)
Q Consensus 138 ~srs~edk---~rs~~eVvVe~I~FV~~ 162 (315)
++ |+++ +++.++|+|.++.-+.+
T Consensus 104 ~~--~~~~dG~kr~~~evva~~v~~~~G 129 (257)
T 4dni_A 104 RM--VPQYDGSMRKYYHYPVIQVHPGCG 129 (257)
T ss_dssp EE--EEEECSSSSSEEEEEEEEECTTTC
T ss_pred EE--eECCCCCcEEEEEEEEEEEEecCC
Confidence 99 4432 78999999999987543
No 29
>3stb_C RNA-editing complex protein MP42; editosome, nanobody, single domain antibody, VH krepa3, krepa6, RNA binding protein-immune system complex; 2.50A {Trypanosoma brucei}
Probab=99.67 E-value=1.8e-16 Score=137.14 Aligned_cols=78 Identities=12% Similarity=0.121 Sum_probs=70.6
Q ss_pred CCCccEEEEEEEeCCCceEEEcCCCcEEEEEEEEEcCC------CCCeEEEEEEec-chHHHHHhhcCCCCeEEEEEEeE
Q 021274 66 VKVANSVNLIGHVDAPVQFQTSSDGKHWAGTVIVQHAA------SHSLWIPILFEG-DLAHIASSHLKKDDHVHIAGQLT 138 (315)
Q Consensus 66 p~l~NsV~LIGrLg~DPElr~T~~Gk~VA~ftLAV~r~------~~T~wI~Vv~wG-kLAE~aakhLKKGD~V~VeGRL~ 138 (315)
-+.+|+|+|+|||+ ||+.+++. +..++.|+||+++. .+++||+|.+|| ++||.+.+||+||++|+|+|||+
T Consensus 41 ~r~vN~VvLmGRvt-dpq~ry~~-~~~Va~FtLAV~~~~~r~ge~~tdf~~V~vfGg~lAE~i~~ylkkG~rVlVeGRLr 118 (148)
T 3stb_C 41 WRCVNHCVMLGVVQ-NIQEGFVF-EDKVLQFTLITDFEGPSPGDPDKDFHTVRVFDSDYSSRVKEQLRDGEWFLVTGRLR 118 (148)
T ss_dssp CSCSEEEEEEEEEE-EEEEEEET-TEEEEEEEEEEECSSCCTTSCSEEEEEEEECSHHHHHHHHHHCCTTCEEEEEEEEE
T ss_pred heecceEEEEEEec-CccccccC-CCcEEEEEEEEecCCCCCCCCccceEEEEEECChHHHHHHHHhcCCCEEEEEEEEE
Confidence 36699999999996 99999995 78999999999872 257999999996 99999999999999999999999
Q ss_pred ecCCCcC
Q 021274 139 ADPPAIE 145 (315)
Q Consensus 139 srs~edk 145 (315)
+++|+|+
T Consensus 119 mn~~~d~ 125 (148)
T 3stb_C 119 MVPQYDG 125 (148)
T ss_dssp EEEEEET
T ss_pred cceeECC
Confidence 9999876
No 30
>4dka_C RNA-editing complex protein MP81; krepa1, VHH, single domain antibody, protein binding, RNA BI protein-immune system complex; 1.97A {Trypanosoma brucei} PDB: 4dk3_C 4dk6_C
Probab=97.38 E-value=0.00089 Score=54.87 Aligned_cols=70 Identities=19% Similarity=0.220 Sum_probs=51.5
Q ss_pred cEEEEEEEeCCCceEEEcCCCcEEEEEEEEEcCC--CCCeEEEEEEecchH--HHHHhhcCCCCeEEEEEEeEecC
Q 021274 70 NSVNLIGHVDAPVQFQTSSDGKHWAGTVIVQHAA--SHSLWIPILFEGDLA--HIASSHLKKDDHVHIAGQLTADP 141 (315)
Q Consensus 70 NsV~LIGrLg~DPElr~T~~Gk~VA~ftLAV~r~--~~T~wI~Vv~wGkLA--E~aakhLKKGD~V~VeGRL~srs 141 (315)
.++.|+|+|. |++.-+.. ...|.-|+|.++-+ -+.++|.|.++|+.+ +.+-+.|+.|+.|.|.|||++..
T Consensus 4 sn~vlvG~V~-DVQ~Gfl~-~~~V~Qftl~~d~e~~~eke~~tVRC~Gd~~~~~~lk~~lk~g~~v~V~GrLRm~p 77 (105)
T 4dka_C 4 SNALMIGRIA-DVQHGFLG-AMTVTQYVLEVDGGASGEKEFIVIRCMGDNFPASLLKDQVKLGSRVLVQGTLRMNR 77 (105)
T ss_dssp CEEEEEEEEE-EEEEEEET-TEEEEEEEEEECC----CCEEEEEEEECC---------CCCTTCEEEEEEEEECCC
T ss_pred cceEEEEEEE-Eeeecccc-cceEEEEEEEEeCCCCCcccEEEEEEcCccchHHHHHHHHhCCCEEEEEeEEEeee
Confidence 4688999996 66666553 35688999999753 367999999999998 78889999999999999999963
No 31
>2k50_A Replication factor A related protein; uncharacterized protein, structural genomics, PSI-2; NMR {Methanothermobacterthermautotrophicus str}
Probab=96.06 E-value=0.041 Score=43.75 Aligned_cols=70 Identities=13% Similarity=0.111 Sum_probs=53.4
Q ss_pred cEEEEEEEeCCCceEE--EcCCC--cEEEEEEEEEcCCCCCeEEEEEEecchHHHHHhhcCCCCeEEEEEEeEecCCCc
Q 021274 70 NSVNLIGHVDAPVQFQ--TSSDG--KHWAGTVIVQHAASHSLWIPILFEGDLAHIASSHLKKDDHVHIAGQLTADPPAI 144 (315)
Q Consensus 70 NsV~LIGrLg~DPElr--~T~~G--k~VA~ftLAV~r~~~T~wI~Vv~wGkLAE~aakhLKKGD~V~VeGRL~srs~ed 144 (315)
..|.++|.|..--+++ .+.+| ..++.++|+- +|--|++++|++.|+.. ..++.|+.|.|.|......|.+
T Consensus 17 ~~v~i~~~V~~~~~~~~~~~k~G~~~~~~~~~l~D----~TG~I~~t~w~~~~~~~-~~l~~G~vv~i~g~~v~~~f~g 90 (115)
T 2k50_A 17 AETPVTGRVMKISSPRTFTTRKGREGKLANVIIAD----DTGELRAVFWTENIKLL-KKFREGDVIRIKDVNIRGGFGG 90 (115)
T ss_dssp CEEEEEEEEEEECCCEECCCTTSSCCEEEEEEEEE----TTEEEEEEEETTGGGGG-GTCCTTSEEEEEEEEECCCSSS
T ss_pred CEeEEEEEEEECCCceEEEcCCCCEEEEEEEEEEe----CCCeEEEEEeCchhhhh-hcCCCCCEEEEEeeEEccccCC
Confidence 4578999988654666 46677 6777777765 45689999999998754 6799999999999875545654
No 32
>3dm3_A Replication factor A; probably plays AN essential for replication of the chromosome, DNA recombination and repair; 2.40A {Methanocaldococcus jannaschii}
Probab=95.81 E-value=0.04 Score=44.24 Aligned_cols=80 Identities=13% Similarity=0.225 Sum_probs=57.5
Q ss_pred cEEEEEEEeCCCceEEE--cCCCcE--EEEEEEEEcCCCCCeEEEEEEecchHHHHHhhcCCCCeEEEEEEeEecCCCcC
Q 021274 70 NSVNLIGHVDAPVQFQT--SSDGKH--WAGTVIVQHAASHSLWIPILFEGDLAHIASSHLKKDDHVHIAGQLTADPPAIE 145 (315)
Q Consensus 70 NsV~LIGrLg~DPElr~--T~~Gk~--VA~ftLAV~r~~~T~wI~Vv~wGkLAE~aakhLKKGD~V~VeGRL~srs~edk 145 (315)
+.|.++|+|-.--+.+. ..+|.. +..+.|+- +|--|++++|++.|+. .++.||.|.|.|+.+.... +
T Consensus 15 ~~v~v~g~V~~~~~~r~~~~~~G~~~~v~~~~l~D----~TG~IrvtlW~~~a~~---~l~~Gdvv~i~g~vk~~~~-g- 85 (105)
T 3dm3_A 15 MTATFEGEVISALPIKEFKRADGSIGKLKSFIVRD----ETGSIRVTLWDNLTDI---DVGRGDYVRVRGYIREGYY-G- 85 (105)
T ss_dssp EEEEEEEEEEEEEEEEEEECTTSCEEEEEEEEEEE----TTEEEEEEEEGGGGGS---CCCTTCEEEEEEEEEECTT-S-
T ss_pred CeEEEEEEEEECCCceEEEcCCCCeeEEEEEEEEC----CCCcEEEEEECccccc---ccCCCCEEEEEEEEEEccC-C-
Confidence 68999999987766665 457754 55555544 4557999999999986 7999999999998877532 1
Q ss_pred CeEEEEEEEeEEeeec
Q 021274 146 GQANVQVMVHSLNLIE 161 (315)
Q Consensus 146 ~rs~~eVvVe~I~FV~ 161 (315)
.+++.+.+..-|+
T Consensus 86 ---~~eL~~g~~~~i~ 98 (105)
T 3dm3_A 86 ---GLECTANYVEILK 98 (105)
T ss_dssp ---SEEEEEEEEEEEE
T ss_pred ---CEEEEeCCceEEE
Confidence 2455555554444
No 33
>3e0e_A Replication protein A; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 1.60A {Methanococcus maripaludis} PDB: 2k5v_A
Probab=95.69 E-value=0.033 Score=43.78 Aligned_cols=79 Identities=18% Similarity=0.230 Sum_probs=54.9
Q ss_pred cEEEEEEEeCCCceEEE--cCCCc--EEEEEEEEEcCCCCCeEEEEEEecchHHHHHhhcCCCCeEEEEEEeEecCCCcC
Q 021274 70 NSVNLIGHVDAPVQFQT--SSDGK--HWAGTVIVQHAASHSLWIPILFEGDLAHIASSHLKKDDHVHIAGQLTADPPAIE 145 (315)
Q Consensus 70 NsV~LIGrLg~DPElr~--T~~Gk--~VA~ftLAV~r~~~T~wI~Vv~wGkLAE~aakhLKKGD~V~VeGRL~srs~edk 145 (315)
+.|.++|+|-.--+.+. ..+|. .+..+.|+- +|--|++++|++.|+. .++.||.|.|.|+.+..
T Consensus 12 ~~v~i~~~V~~~~~~r~~~~~~G~~~~v~~~~l~D----eTG~I~~tlW~~~~~~---~i~~Gdvv~i~g~v~~~----- 79 (97)
T 3e0e_A 12 LSGTINAEVVTAYPKKEFSRKDGTKGQLKSLFLKD----DTGSIRGTLWNELADF---EVKKGDIAEVSGYVKQG----- 79 (97)
T ss_dssp EEEEEEEEEEEECCCEEEC----CCEEEEEEEEEE----TTEEEEEEEEGGGGGC---CCCTTCEEEEEEEEEEC-----
T ss_pred CcEEEEEEEEECCCceEEEcCCCCeeEEEEEEEEC----CCCcEEEEEECCcccc---ccCCCCEEEEEEEEEEc-----
Confidence 67999999987665665 34673 466666554 6779999999999986 69999999999977543
Q ss_pred CeEEEEEEEeEEeeec
Q 021274 146 GQANVQVMVHSLNLIE 161 (315)
Q Consensus 146 ~rs~~eVvVe~I~FV~ 161 (315)
...+++.+....-|+
T Consensus 80 -~~~~el~~g~~~~i~ 94 (97)
T 3e0e_A 80 -YSGLEISVDNIGIIE 94 (97)
T ss_dssp ---CEEEEEEEEEEEE
T ss_pred -CCeEEEEECCCcEEE
Confidence 114566666655443
No 34
>1o7i_A SSB, SSO2364, single stranded DNA binding protein; OB fold; 1.2A {Sulfolobus solfataricus} SCOP: b.40.4.3
Probab=94.05 E-value=0.2 Score=40.45 Aligned_cols=63 Identities=19% Similarity=0.184 Sum_probs=46.2
Q ss_pred cEEEEEEEeCCCceEE--EcCCCc-EEEEEEEEEcCCCCCeEEEEEEecchHHHHHhhcCCCCeEEEE-EEeEec
Q 021274 70 NSVNLIGHVDAPVQFQ--TSSDGK-HWAGTVIVQHAASHSLWIPILFEGDLAHIASSHLKKDDHVHIA-GQLTAD 140 (315)
Q Consensus 70 NsV~LIGrLg~DPElr--~T~~Gk-~VA~ftLAV~r~~~T~wI~Vv~wGkLAE~aakhLKKGD~V~Ve-GRL~sr 140 (315)
+.|.++|.|-.--+++ .+.+|+ .+....|+- +|--|++++|++.|+ .++.||.|+|. |+....
T Consensus 13 ~~v~~~~~V~~~~~~~~~~~k~G~~~~~~~~l~D----~TG~I~~tlW~~~~~----~~~~G~vv~i~~g~v~~~ 79 (119)
T 1o7i_A 13 ESVNVTVRVLEASEARQIQTKNGVRTISEAIVGD----ETGRVKLTLWGKHAG----SIKEGQVVKIENAWTTAF 79 (119)
T ss_dssp SSEEEEEEEEEECCCEEECCTTCCEEEEEEEEEE----TTEEEEEEEEGGGTT----CCCTTCEEEEEEEEEEEE
T ss_pred CcEEEEEEEEECCCCeeEEecCCCEEEEEEEEEe----CCCEEEEEEECChhh----cCCCCCEEEEEeEEEEEe
Confidence 4578888876543333 567886 666666655 555699999999984 58999999999 877653
No 35
>1ynx_A Replication factor-A protein 1; canonical OB fold, DNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=92.07 E-value=0.26 Score=39.59 Aligned_cols=64 Identities=14% Similarity=0.028 Sum_probs=49.4
Q ss_pred ccEEEEEEEeCCCceEEEc--CCC-cEEEEEEEEEcCCCCCeEEEEEEecchHHHHHhhcCCCCeEEEEEE
Q 021274 69 ANSVNLIGHVDAPVQFQTS--SDG-KHWAGTVIVQHAASHSLWIPILFEGDLAHIASSHLKKDDHVHIAGQ 136 (315)
Q Consensus 69 ~NsV~LIGrLg~DPElr~T--~~G-k~VA~ftLAV~r~~~T~wI~Vv~wGkLAE~aakhLKKGD~V~VeGR 136 (315)
.+.+.+.|||.+--++|.. .+| ..+..+.|+- ++--|++++|+++|+.....|+.|+.++|+|-
T Consensus 14 ~~~w~I~~rV~~k~~~r~~~~~~~~g~~~~~~L~D----e~G~I~at~~~~~~~~f~~~l~eG~vy~Is~~ 80 (114)
T 1ynx_A 14 QNVWTIKARVSYKGEIKTWHNQRGDGKLFNVNFLD----TSGEIRATAFNDFATKFNEILQEGKVYYVSKA 80 (114)
T ss_dssp TCCCEEEEEEEEEEEEEEEECSSCEEEEEEEEEEE----TTEEEEEEECHHHHHHHHHHSCSSSEEEEESC
T ss_pred CCceEEEEEEEEeccceEEecCCCCceEEEEEEEC----CCCeEEEEECHHHHHHHHhhcccCcEEEECCc
Confidence 4568999999987777663 233 3455555544 23399999999999999999999999999983
No 36
>2k75_A Uncharacterized protein TA0387; closed beta barrel, OB fold, structural genomics, PSI-2, protein structure initiative; NMR {Thermoplasma acidophilum}
Probab=91.78 E-value=0.54 Score=37.47 Aligned_cols=60 Identities=23% Similarity=0.250 Sum_probs=46.6
Q ss_pred ccEEEEEEEeCCCceEEEcCCCcE--EEEEEEEEcCCCCCeEEEEEEecchHHHHHhhcCCCCeEEEE-EEeEe
Q 021274 69 ANSVNLIGHVDAPVQFQTSSDGKH--WAGTVIVQHAASHSLWIPILFEGDLAHIASSHLKKDDHVHIA-GQLTA 139 (315)
Q Consensus 69 ~NsV~LIGrLg~DPElr~T~~Gk~--VA~ftLAV~r~~~T~wI~Vv~wGkLAE~aakhLKKGD~V~Ve-GRL~s 139 (315)
.+.|.++|.|-.--+.+.+.+|+. ++...|+- +|--|++++|++. ++.||.|.|. |+...
T Consensus 13 ~~~v~v~~~V~~~~~~~~~k~G~~~~v~~~~l~D----eTG~I~~tlW~~~-------l~~Gdvv~i~ng~v~~ 75 (106)
T 2k75_A 13 TPYVSVIGKITGIHKKEYESDGTTKSVYQGYIED----DTARIRISSFGKQ-------LQDSDVVRIDNARVAQ 75 (106)
T ss_dssp CSEEEEEEEEEEEEEEEEEETTEEEEEEEEEEEC----SSCEEEEEEESSC-------CCTTEEEEEEEEEEEE
T ss_pred CceEEEEEEEEEccccccccCCCeeEEEEEEEEc----CCCeEEEEEEcCc-------cCCCCEEEEEeeEEeE
Confidence 466899999877666656668864 66666554 5667999999998 9999999999 77765
No 37
>2hql_A Hypothetical protein Mg376 homolog; structural genomics, conserved hypothetical protein, GI:1673959, MPN554, OB fold; 2.00A {Mycoplasma pneumoniae}
Probab=90.24 E-value=4.9 Score=32.38 Aligned_cols=87 Identities=21% Similarity=0.138 Sum_probs=59.7
Q ss_pred CCccEEEEEEEeCCCceEEEcCCCcEEEEEEEEEcC--CCC--CeEEEEEEecchHHHHHhhcCCCCeEEEEEEeEecCC
Q 021274 67 KVANSVNLIGHVDAPVQFQTSSDGKHWAGTVIVQHA--ASH--SLWIPILFEGDLAHIASSHLKKDDHVHIAGQLTADPP 142 (315)
Q Consensus 67 ~l~NsV~LIGrLg~DPElr~T~~Gk~VA~ftLAV~r--~~~--T~wI~Vv~wGkLAE~aakhLKKGD~V~VeGRL~srs~ 142 (315)
-|+|.|.|-|-+.+. +-+- .+.-...+|...| .++ |+|+-+-+-|.||-.+.+|.+|=..|.|+|-|++..-
T Consensus 6 gMLN~V~LEG~IeS~---kWS~-kKTGF~VTIkQkR~FGer~FTDyyViYAN~QL~~ELEky~~k~k~isieG~L~TY~e 81 (110)
T 2hql_A 6 GMLNRVFLEGEIESS---CWSV-KKTGFLVTIKQMRFFGERLFTDYYVIYANGQLAYELEKHTKKYKTISIEGILRTYLE 81 (110)
T ss_dssp -CCEEEEEEEEEEEE---EECT-TCSEEEEEEEEEEEETTEEEEEEEEEEEEHHHHHHHHHHHTTCSEEEEEEEEEEEEE
T ss_pred ceEEEEEEeeeeehh---cccc-cCceEEEEEeehhhhccccceeEEEEEECCeeehhHHHhhhhceEEEEeeehhhHHH
Confidence 589999999988642 2232 2223344566666 444 6899999999999999999999999999999998642
Q ss_pred CcCCeEEEEEEEeEE
Q 021274 143 AIEGQANVQVMVHSL 157 (315)
Q Consensus 143 edk~rs~~eVvVe~I 157 (315)
...+.-...|.|..|
T Consensus 82 kkS~iWKTtI~~~KI 96 (110)
T 2hql_A 82 RKSEIWKTTIEIVKI 96 (110)
T ss_dssp TTTTEEEEEEEEEEE
T ss_pred HhcccceeEEEEEEE
Confidence 111333444444433
No 38
>3f2b_A DNA-directed DNA polymerase III alpha chain; DNA polymerase C, DNA polymerase III; HET: DGT; 2.39A {Geobacillus kaustophilus} PDB: 3f2c_A* 3f2d_A*
Probab=88.52 E-value=3.6 Score=44.95 Aligned_cols=86 Identities=17% Similarity=0.133 Sum_probs=64.9
Q ss_pred CCccEEEEEEEeCCCceEEEcCCCcEEEEEEEEEcCCCCCeEEEEEEecchHHH--HHhhcCCCCeEEEEEEeEecCCCc
Q 021274 67 KVANSVNLIGHVDAPVQFQTSSDGKHWAGTVIVQHAASHSLWIPILFEGDLAHI--ASSHLKKDDHVHIAGQLTADPPAI 144 (315)
Q Consensus 67 ~l~NsV~LIGrLg~DPElr~T~~Gk~VA~ftLAV~r~~~T~wI~Vv~wGkLAE~--aakhLKKGD~V~VeGRL~srs~ed 144 (315)
.-.+.|.+.|.|-. .|.+.+.+|+.+..|.|.- .|+-|.|..|-+-.+. ..+.+++|+.|-|.|.++.++|..
T Consensus 15 ~~~~~~~~~g~v~~-~~~~~~~~~~~~~~~~~td----~~~~~~~k~f~~~~~~~~~~~~~~~g~~~~~~g~~~~d~~~~ 89 (1041)
T 3f2b_A 15 EEERRVVVQGYVFD-AEVSELKSGRTLLTMKITD----YTNSILVKMFSRDKEDAELMSGVKKGMWVKVRGSVQNDTFVR 89 (1041)
T ss_dssp SCEEEEEEEEEEEE-EEEEECTTSCEEEEEEEEC----SSCEEEEEEECSSHHHHHHHHTCCTTCEEEEEEEEEEETTTT
T ss_pred cccceEEEEEEEEE-EEEEEccCCCEEEEEEEEe----CCCCEEEEEeecccchHHHHhcCCCCCEEEEEEEEEeccCCc
Confidence 44678999999885 8999999999877666543 4677999888654443 456799999999999999999865
Q ss_pred CCeEEEEEEEeEEeeec
Q 021274 145 EGQANVQVMVHSLNLIE 161 (315)
Q Consensus 145 k~rs~~eVvVe~I~FV~ 161 (315)
+ +.+.+.+|+-+.
T Consensus 90 ~----~~~~~~~~~~~~ 102 (1041)
T 3f2b_A 90 D----LVIIANDLNEIA 102 (1041)
T ss_dssp E----EEEEEEEEEEEC
T ss_pred c----eEEEeeeeEEec
Confidence 4 235555665554
No 39
>4gop_B Putative uncharacterized protein; OB fold, ssDNA binding, DNA binding protein-DNA complex; HET: DNA; 3.10A {Ustilago maydis}
Probab=84.79 E-value=4.9 Score=32.81 Aligned_cols=89 Identities=9% Similarity=0.026 Sum_probs=57.8
Q ss_pred CccCCCCCCccEEEEEEEeCCCceEEEcCCCcEEEEEEEEEcCCCCCeEEEEEEecchHHH---HHhhcCCCCeEEEEEE
Q 021274 60 SEIPFQVKVANSVNLIGHVDAPVQFQTSSDGKHWAGTVIVQHAASHSLWIPILFEGDLAHI---ASSHLKKDDHVHIAGQ 136 (315)
Q Consensus 60 ~eI~wqp~l~NsV~LIGrLg~DPElr~T~~Gk~VA~ftLAV~r~~~T~wI~Vv~wGkLAE~---aakhLKKGD~V~VeGR 136 (315)
..+.....-++.|.|+|.|-. +.. +.....++| .+ .|--|.|..|.+..+. -...+..|+.|.|.|+
T Consensus 27 ~~f~i~g~~i~~V~iVG~V~~---~~~---~~~~~~~~l--dD--~TG~I~~~~W~~~~~~~~~~~~~~~~g~yVrV~G~ 96 (136)
T 4gop_B 27 AEFILDGAELGQLTFVAVVRN---ISR---NATNVAYSV--ED--GTGQIEVRQWLDSSSDDSSKASEIRNNVYVRVLGT 96 (136)
T ss_dssp CCCBSSSSBCCEEEEEEEEEE---EEE---CSSEEEEEE--EC--SSCEEEEEEECC--------CCSCCTTCEEEEEEE
T ss_pred CcEEECCEEEEEEEEEEEEEE---EEe---cCCeEEEEE--EC--CCCCEEEEEecccCCcccccccccCCCCEEEEEEE
Confidence 455666677999999999873 222 222233333 33 4557999999876653 3457999999999999
Q ss_pred eEecCCCcCCeEEEEEEEeEEeeecCCc
Q 021274 137 LTADPPAIEGQANVQVMVHSLNLIEPTS 164 (315)
Q Consensus 137 L~srs~edk~rs~~eVvVe~I~FV~~k~ 164 (315)
|+.. .+ ..+|.+..+.-+...+
T Consensus 97 v~~f--~g----~~qi~~~~ir~v~d~N 118 (136)
T 4gop_B 97 LKSF--QN----RRSISSGHMRPVIDYN 118 (136)
T ss_dssp EEEE--TT----EEEEEESEEEECSSHH
T ss_pred EEEe--CC----EEEEEEEEEEECCCcc
Confidence 9874 22 2467777777776554
No 40
>1eov_A ASPRS, aspartyl-tRNA synthetase; aminoacyl tRNA synthetase, tRNA ligase, APO-enzyme, OB-fold,; 2.30A {Saccharomyces cerevisiae} SCOP: b.40.4.1 d.104.1.1 PDB: 1asy_A* 1asz_A*
Probab=82.99 E-value=19 Score=35.76 Aligned_cols=86 Identities=16% Similarity=0.190 Sum_probs=58.8
Q ss_pred cEEEEEEEeCCCceEEEcCCCcEEEEEEEEEcCCCCCeEEEEEEecc----hHH---HHHhhcCCCCeEEEEEEeEecCC
Q 021274 70 NSVNLIGHVDAPVQFQTSSDGKHWAGTVIVQHAASHSLWIPILFEGD----LAH---IASSHLKKDDHVHIAGQLTADPP 142 (315)
Q Consensus 70 NsV~LIGrLg~DPElr~T~~Gk~VA~ftLAV~r~~~T~wI~Vv~wGk----LAE---~aakhLKKGD~V~VeGRL~srs~ 142 (315)
..|.|.|+|.+ +|. .|+.++.+.|.- .+-.++|++-.+ +.+ ..++.|..||.|.|+|.+..+.-
T Consensus 37 ~~V~v~GwV~~---~R~--~g~~l~Fi~LrD----~~g~iQvv~~~~~~~~~~~~~~~~~~~l~~e~~V~V~G~v~~~~~ 107 (487)
T 1eov_A 37 KEVLFRARVHN---TRQ--QGATLAFLTLRQ----QASLIQGLVKANKEGTISKNMVKWAGSLNLESIVLVRGIVKKVDE 107 (487)
T ss_dssp CEEEEEEEEEE---EEE--CSSSEEEEEEEE----TTEEEEEEEECCSSSSSCHHHHHHHTTCCTTCEEEEEEEEEECSS
T ss_pred CEEEEEEEEEE---eec--cCCccEEEEEEE----CCccEEEEEeccccccccHHHHHHHhcCCCCCEEEEEEEEEeCCC
Confidence 35999999973 444 355445555543 345789888643 222 34567999999999999987753
Q ss_pred CcC--CeEEEEEEEeEEeeecCCc
Q 021274 143 AIE--GQANVQVMVHSLNLIEPTS 164 (315)
Q Consensus 143 edk--~rs~~eVvVe~I~FV~~k~ 164 (315)
... ..-.++|.|+++..+....
T Consensus 108 ~~~~~~~g~~El~~~~i~vl~~a~ 131 (487)
T 1eov_A 108 PIKSATVQNLEIHITKIYTISETP 131 (487)
T ss_dssp CCTTSSEEEEEEEEEEEEEEECCC
T ss_pred CCcCCCCCcEEEEEEEEEEeeccc
Confidence 221 2456999999999997543
No 41
>3kdf_D Replication protein A 32 kDa subunit; wheat GERM cell free, protein complex, center for eukaryotic structural genomics, PSI; HET: MSE; 1.98A {Homo sapiens} SCOP: b.40.4.3 PDB: 2pqa_A 1quq_A 1l1o_B
Probab=81.86 E-value=6.9 Score=31.77 Aligned_cols=89 Identities=9% Similarity=0.034 Sum_probs=55.1
Q ss_pred ccCCCCCCccEEEEEEEeCCCceEEEcCCCcEEEEEEEEEcCCCCCe-EEEEEEecchHHH--HHhhcCCCCeEEEEEEe
Q 021274 61 EIPFQVKVANSVNLIGHVDAPVQFQTSSDGKHWAGTVIVQHAASHSL-WIPILFEGDLAHI--ASSHLKKDDHVHIAGQL 137 (315)
Q Consensus 61 eI~wqp~l~NsV~LIGrLg~DPElr~T~~Gk~VA~ftLAV~r~~~T~-wI~Vv~wGkLAE~--aakhLKKGD~V~VeGRL 137 (315)
.+.....-++.|.|+|.|-. +.. ... ...+ .+.+ .|- -|.|..|.+-.+. ....++.|+-|.|.|+|
T Consensus 23 ~f~i~g~~i~~V~iVG~V~~---~~~--~~~-~~~~--~ldD--~TG~~I~~~~W~~~~~~~~~~~~~~~g~yVrV~G~l 92 (132)
T 3kdf_D 23 VFRIGNVEISQVTIVGIIRH---AEK--APT-NIVY--KIDD--MTAAPMDVRQWVDTDDTSSENTVVPPETYVKVAGHL 92 (132)
T ss_dssp CEEETTEECCEEEEEEEEEE---EEE--CSS-EEEE--EEEC--SSSSCEEEEEEC---------CCCCTTCEEEEEEEE
T ss_pred cEEECCEEEEEEEEEEEEEE---EEE--cCC-eEEE--EEEC--CCCCEEEEEEEccCCCcccccccccCCCEEEEEEEE
Confidence 34455566889999999863 222 122 2223 3333 566 8999999876543 24578999999999999
Q ss_pred EecCCCcCCeEEEEEEEeEEeeecCCcc
Q 021274 138 TADPPAIEGQANVQVMVHSLNLIEPTSQ 165 (315)
Q Consensus 138 ~srs~edk~rs~~eVvVe~I~FV~~k~q 165 (315)
+.. .++ .+|.+..+.-++..+.
T Consensus 93 ~~f--~g~----~qi~~~~ir~v~d~Ne 114 (132)
T 3kdf_D 93 RSF--QNK----KSLVAFKIMPLEDMNE 114 (132)
T ss_dssp EEE--TTE----EEEEEEEEEECSSTHH
T ss_pred EeE--CCE----EEEEEEEEEEcCCccH
Confidence 984 222 4467777777776653
No 42
>2hpi_A DNA polymerase III alpha subunit; POL-beta-like nucleotidyltransferase fold, transferase; HET: DNA; 3.00A {Thermus aquaticus} PDB: 2hpm_A* 3e0d_A*
Probab=78.76 E-value=3.5 Score=45.73 Aligned_cols=79 Identities=18% Similarity=0.212 Sum_probs=40.5
Q ss_pred EEEEEEEeCCCceEEEcCCCcEEEEEEEEEcCCCCCeEEEEEEecchHHHHHhhcCCCCeEEEEEEeEecCCCcCCeEEE
Q 021274 71 SVNLIGHVDAPVQFQTSSDGKHWAGTVIVQHAASHSLWIPILFEGDLAHIASSHLKKDDHVHIAGQLTADPPAIEGQANV 150 (315)
Q Consensus 71 sV~LIGrLg~DPElr~T~~Gk~VA~ftLAV~r~~~T~wI~Vv~wGkLAE~aakhLKKGD~V~VeGRL~srs~edk~rs~~ 150 (315)
.|.+.|-|.. .+.+.|.+|+.++.++|.- .+--+.|++|.+.-+.....|..|..|.|.|+++.+. .+
T Consensus 1044 ~v~v~G~v~~-~~~~~Tk~G~~maf~tleD----~tg~~evvvf~~~~~~~~~~l~~~~~~~v~G~v~~~~-------~~ 1111 (1220)
T 2hpi_A 1044 KVLLSGMVEE-VVRKPTRSGGMMARFTLSD----ETGALEVVVFGRAYEGVSPKLKEDIPLLVLAEVEKGE-------EL 1111 (1220)
T ss_dssp EEEEEEEECC-C------------CEEEEE----TTEEEEEC-------------CTTCEEEEEEEEC------------
T ss_pred eEEEEEEEEE-EEEeecCCCCeEEEEEEEE----CCCCEEEEEcHHHHHHHHHHhccCCEEEEEEEEEECC-------Cc
Confidence 3788888874 7777889999999888876 5666999999999999999999999999999998432 36
Q ss_pred EEEEeEEeeec
Q 021274 151 QVMVHSLNLIE 161 (315)
Q Consensus 151 eVvVe~I~FV~ 161 (315)
+|+|+++.-+.
T Consensus 1112 ~l~~~~i~~l~ 1122 (1220)
T 2hpi_A 1112 RVLAQAVWTLE 1122 (1220)
T ss_dssp CEEEEEEEEHH
T ss_pred EEEEeeeecHH
Confidence 88999987664
No 43
>1jmc_A Protein (replication protein A (RPA)); human ssDNA binding replication protein A(RPA), single stranded DNA-binding protein, protein-ssDNA complex; HET: DNA; 2.40A {Homo sapiens} SCOP: b.40.4.3 b.40.4.3 PDB: 1fgu_A
Probab=77.87 E-value=5.3 Score=35.10 Aligned_cols=63 Identities=13% Similarity=-0.001 Sum_probs=46.3
Q ss_pred ccEEEEEEEeCCCceEEEc--CCC-cEEEEEEEEEcCCCCCeEEEEEEecchHHHHHhhcCCCCeEEEEE
Q 021274 69 ANSVNLIGHVDAPVQFQTS--SDG-KHWAGTVIVQHAASHSLWIPILFEGDLAHIASSHLKKDDHVHIAG 135 (315)
Q Consensus 69 ~NsV~LIGrLg~DPElr~T--~~G-k~VA~ftLAV~r~~~T~wI~Vv~wGkLAE~aakhLKKGD~V~VeG 135 (315)
.+.+.+.|||.+--++|.. ++| ..+..+.|+- ++--|++++|+++|+.....|+.|+.++|++
T Consensus 18 ~~~w~I~~rV~~k~~~r~~~~~~~~g~~~~~~L~D----e~G~I~at~~~~~~~~~~~~l~~G~vy~i~~ 83 (246)
T 1jmc_A 18 QSKWTICARVTNKSQIRTWSNSRGEGKLFSLELVD----ESGEIRATAFNEQVDKFFPLIEVNKVYYFSK 83 (246)
T ss_dssp CCCCEEEEEEEEECCCEEEECSSCEEEEEEEEEEC----SSCEEEEEEEHHHHHHHGGGCCTTCEEEEEC
T ss_pred CCceEEEEEEEEecccceeeCCCCCceEEEEEEEC----CCCeEEEEEChHHHHHhhhhcccCCEEEECC
Confidence 3567899999877666642 333 2344444443 2227999999999999999999999999999
No 44
>1wyd_A Hypothetical aspartyl-tRNA synthetase; archaea, LIGA; HET: EPE; 2.30A {Sulfolobus tokodaii}
Probab=74.39 E-value=26 Score=34.24 Aligned_cols=80 Identities=13% Similarity=0.214 Sum_probs=55.4
Q ss_pred cEEEEEEEeCCCceEEEcCCCcEEEEEEEEEcCCCCCeEEEEEEecc--hHHHHHhhcCCCCeEEEEEEeEecCCCcCCe
Q 021274 70 NSVNLIGHVDAPVQFQTSSDGKHWAGTVIVQHAASHSLWIPILFEGD--LAHIASSHLKKDDHVHIAGQLTADPPAIEGQ 147 (315)
Q Consensus 70 NsV~LIGrLg~DPElr~T~~Gk~VA~ftLAV~r~~~T~wI~Vv~wGk--LAE~aakhLKKGD~V~VeGRL~srs~edk~r 147 (315)
..|.|.|+|.+ +|.. |+ ++.+.|.- .+-.++|++-.+ ..+ .++.|..||.|.|+|.+..+.- +.
T Consensus 17 ~~V~v~Gwv~~---~R~~--g~-~~F~~lrD----~~g~iQ~v~~~~~~~~~-~~~~l~~~~~v~v~G~v~~~~~---~~ 82 (429)
T 1wyd_A 17 KEVIWAGWVHL---LRDL--GG-KKFIILRD----KTGLGQVVVDKNSSAFG-ISQELTQESVIQVRGIVKADKR---AP 82 (429)
T ss_dssp CEEEEEEEEEE---EEEE--TT-EEEEEEEE----TTEEEEEEECTTSTTHH-HHTTCCTTCEEEEEEEEEECSS---SG
T ss_pred CEEEEEEEEEE---EecC--CC-eEEEEEEE----CCeeEEEEEeCChHHHH-HHHhCCCCCEEEEEEEEEecCC---CC
Confidence 35999999974 4553 55 45444443 345588888643 222 3367999999999999987642 22
Q ss_pred EEEEEEEeEEeeecCC
Q 021274 148 ANVQVMVHSLNLIEPT 163 (315)
Q Consensus 148 s~~eVvVe~I~FV~~k 163 (315)
..++|.|+++..+.+.
T Consensus 83 ~~~el~~~~~~vl~~~ 98 (429)
T 1wyd_A 83 RGIELHAEEITLLSKA 98 (429)
T ss_dssp GGEEEEEEEEEEEECC
T ss_pred ccEEEEEeEEEEeccC
Confidence 3589999999998754
No 45
>4gop_C Putative uncharacterized protein; OB fold, ssDNA binding, DNA binding protein-DNA complex; HET: DNA; 3.10A {Ustilago maydis}
Probab=73.98 E-value=5 Score=38.82 Aligned_cols=63 Identities=13% Similarity=0.032 Sum_probs=47.3
Q ss_pred cEEEEEEEeCCCceEEEc--CCCc-EEEEEEEEEcCCCCCeEEEEEEecchHHHHHhhcCCCCeEEEEEE
Q 021274 70 NSVNLIGHVDAPVQFQTS--SDGK-HWAGTVIVQHAASHSLWIPILFEGDLAHIASSHLKKDDHVHIAGQ 136 (315)
Q Consensus 70 NsV~LIGrLg~DPElr~T--~~Gk-~VA~ftLAV~r~~~T~wI~Vv~wGkLAE~aakhLKKGD~V~VeGR 136 (315)
+.+.|.|||..--++|.. ++|. .+..+.|+- ++--|++++|+++|+.....|+.|+.++|++-
T Consensus 14 ~~w~I~~rV~~k~~ir~~~~~~~~g~~~~~~L~D----e~G~I~at~~~~~~~~f~~~l~eG~vy~Is~~ 79 (444)
T 4gop_C 14 NRWTIKARVTSKSDIRHWSNQRGEGKLFSVNLLD----DSGEIKATGFNDAVDRFYPLLQENHVYLISKA 79 (444)
T ss_dssp CSCEEEEECCEECCCEEEECSSCEEEEEEEEEEC----SSCEEEEEEETHHHHHHTTTCCTTCEEEEESC
T ss_pred cceEEEEEEEEccCcceecCCCCCceEEEEEEEc----CCCEEEEEEeHHHHHHHHHheecCCEEEEcCC
Confidence 567999999976566542 3332 345555543 22389999999999999999999999999984
No 46
>1x54_A Asparaginyl-tRNA synthetase; aminoacyl-tRNA synthetase, riken structural genomics/proteom initiative, RSGI, structural genomics, ligase; HET: 4AD; 1.45A {Pyrococcus horikoshii} PDB: 1x55_A* 1x56_A
Probab=73.20 E-value=31 Score=33.68 Aligned_cols=81 Identities=20% Similarity=0.236 Sum_probs=55.3
Q ss_pred cEEEEEEEeCCCceEEEcCCCcEEEEEEEEEcCCCCCeEEEEEEecch----HHHHHhhcCCCCeEEEEEEeEecCCCcC
Q 021274 70 NSVNLIGHVDAPVQFQTSSDGKHWAGTVIVQHAASHSLWIPILFEGDL----AHIASSHLKKDDHVHIAGQLTADPPAIE 145 (315)
Q Consensus 70 NsV~LIGrLg~DPElr~T~~Gk~VA~ftLAV~r~~~T~wI~Vv~wGkL----AE~aakhLKKGD~V~VeGRL~srs~edk 145 (315)
..|.|.|+|.+ +|.. |+ ++...|.- .+-.++|++-.+. +-..++.|..||.|.|+|.+..+.-
T Consensus 17 ~~V~v~G~v~~---~R~~--g~-~~F~~lrD----~~g~iQ~v~~~~~~~~~~~~~~~~l~~~~~v~v~G~v~~~~~--- 83 (434)
T 1x54_A 17 KKVRLAGWVYT---NMRV--GK-KIFLWIRD----STGIVQAVVAKNVVGEETFEKAKKLGRESSVIVEGIVKADER--- 83 (434)
T ss_dssp CEEEEEEEEEE---EEEE--TT-EEEEEEEE----TTEEEEEEECHHHHCHHHHHHHHTCCTTCEEEEEEEEEECTT---
T ss_pred CEEEEEEEEEE---EecC--CC-eEEEEEEE----CCEEEEEEEECCcCCHHHHHHHhcCCCCCEEEEEEEEEecCC---
Confidence 35999999974 4554 55 45444443 3456999885432 1123367999999999999987642
Q ss_pred CeEEEEEEEeEEeeecCC
Q 021274 146 GQANVQVMVHSLNLIEPT 163 (315)
Q Consensus 146 ~rs~~eVvVe~I~FV~~k 163 (315)
+...++|.|+++..+.+.
T Consensus 84 ~~~~~el~~~~~~vl~~~ 101 (434)
T 1x54_A 84 APGGAEVHVEKLEVIQAV 101 (434)
T ss_dssp SGGGEEEEEEEEEEEECC
T ss_pred CCccEEEEEeEEEEeecC
Confidence 223589999999999754
No 47
>3m4p_A Ehasnrs, asparaginyl-tRNA synthetase, putative; aminoacyl-tRNA synthetase, tRNA ligase, AARS, translation, ATP-binding, nucleotide-binding; HET: 4AD; 2.83A {Entamoeba histolytica} PDB: 3m4q_A
Probab=72.53 E-value=15 Score=36.32 Aligned_cols=86 Identities=16% Similarity=0.169 Sum_probs=55.5
Q ss_pred cEEEEEEEeCCCceEEEcCCCcEEEEEEEEEcCCCCCeEEEEEEec-chHH-HHHhhcCCCCeEEEEEEeEecCCCcCCe
Q 021274 70 NSVNLIGHVDAPVQFQTSSDGKHWAGTVIVQHAASHSLWIPILFEG-DLAH-IASSHLKKDDHVHIAGQLTADPPAIEGQ 147 (315)
Q Consensus 70 NsV~LIGrLg~DPElr~T~~Gk~VA~ftLAV~r~~~T~wI~Vv~wG-kLAE-~aakhLKKGD~V~VeGRL~srs~edk~r 147 (315)
..|.|.|+|.+ +|. .|+-++...|.- .+-.++|++-. ++.+ ..+..|..||.|.|+|.+....-.....
T Consensus 31 ~~V~v~Gwv~~---~R~--~Gk~~~Fi~LrD----~sg~iQvv~~~~~~~~~~~~~~l~~g~~V~V~G~v~~~~~~~~~~ 101 (456)
T 3m4p_A 31 KLVTFKGWAYH---IRK--ARKTLIFVELRD----GSGYCQCVIFGKELCEPEKVKLLTRECSLEITGRLNAYAGKNHPP 101 (456)
T ss_dssp SEEEEEEEEEE---EEC--CSSSEEEEEEEC----SSCEEEEEEESTTTTCHHHHTTCCTTCEEEEEEEEECCCSSSCCC
T ss_pred CEEEEEEEEEE---Eec--CCCceEEEEEEe----CCccEEEEEecccchhhHHhhcCCCccEEEEEeEEEecCCcccCc
Confidence 35999999973 443 344355444432 23458998876 4322 1235799999999999998653211111
Q ss_pred -----EEEEEEEeEEeeecCCc
Q 021274 148 -----ANVQVMVHSLNLIEPTS 164 (315)
Q Consensus 148 -----s~~eVvVe~I~FV~~k~ 164 (315)
-.++|.|+++..+....
T Consensus 102 ~~~t~g~~El~~~~i~vl~~a~ 123 (456)
T 3m4p_A 102 EIADILNLEMQVTEWKVIGESP 123 (456)
T ss_dssp SCTTBCSSEEEEEEEEEEECCC
T ss_pred ccCCCCcEEEEEeEEEEEecCC
Confidence 34799999999987543
No 48
>3nem_A Aspartyl-tRNA synthetase; rossmann fold, OB fold, ligase; HET: AMO ATP; 1.89A {Thermococcus kodakarensis} PDB: 3nel_A* 3nen_A 1b8a_A*
Probab=72.06 E-value=63 Score=31.64 Aligned_cols=82 Identities=13% Similarity=0.159 Sum_probs=56.0
Q ss_pred cEEEEEEEeCCCceEEEcCCCcEEEEEEEEEcCCCCCeEEEEEEecch----HHHHHhhcCCCCeEEEEEEeEecCCCcC
Q 021274 70 NSVNLIGHVDAPVQFQTSSDGKHWAGTVIVQHAASHSLWIPILFEGDL----AHIASSHLKKDDHVHIAGQLTADPPAIE 145 (315)
Q Consensus 70 NsV~LIGrLg~DPElr~T~~Gk~VA~ftLAV~r~~~T~wI~Vv~wGkL----AE~aakhLKKGD~V~VeGRL~srs~edk 145 (315)
..|.|.|+|.+ +|.. |+ ++.+.|.- .+-.++|++-.+. +-..++.|..||.|.|+|.+....- .
T Consensus 17 ~~V~v~Gwv~~---~R~~--g~-~~Fi~LrD----~~g~iQ~v~~~~~~~~~~~~~~~~l~~~~~V~V~G~v~~~~~-~- 84 (438)
T 3nem_A 17 QKVKVAGWVWE---VKDL--GG-IKFLWIRD----RDGIVQITAPKKKVDPELFKLIPKLRSEDVVAVEGVVNFTPK-A- 84 (438)
T ss_dssp CEEEEEEEEEE---EEEE--TT-EEEEEEEE----TTEEEEEEEETTTSCHHHHHHGGGCCTTCEEEEEEEEEECTT-S-
T ss_pred CEEEEEEEEEE---EecC--CC-eEEEEEEE----CCeeEEEEEeCCcCCHHHHHHHhcCCCCCEEEEEEEEEeCCC-C-
Confidence 35899999974 4443 44 45444443 3446999887653 1123567999999999999987531 1
Q ss_pred CeEEEEEEEeEEeeecCCc
Q 021274 146 GQANVQVMVHSLNLIEPTS 164 (315)
Q Consensus 146 ~rs~~eVvVe~I~FV~~k~ 164 (315)
...++|.|+++..+....
T Consensus 85 -~~~~el~~~~i~vl~~~~ 102 (438)
T 3nem_A 85 -KLGFEILPEKIVVLNRAE 102 (438)
T ss_dssp -TTSEEEEEEEEEEEECBC
T ss_pred -CCcEEEEEEEEEEEecCC
Confidence 124899999999987543
No 49
>3bju_A Lysyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP- binding, cytoplasm, ligase, nucleotide-binding, phosphoprotein, polymorphism; HET: LYS ATP; 2.31A {Homo sapiens}
Probab=70.00 E-value=36 Score=34.10 Aligned_cols=79 Identities=11% Similarity=0.218 Sum_probs=54.7
Q ss_pred EEEEEEEeCCCceEEEcCCCcEEEEEEEEEcCCCCCeEEEEEEecchH---H---HHHhhcCCCCeEEEEEEeEecCCCc
Q 021274 71 SVNLIGHVDAPVQFQTSSDGKHWAGTVIVQHAASHSLWIPILFEGDLA---H---IASSHLKKDDHVHIAGQLTADPPAI 144 (315)
Q Consensus 71 sV~LIGrLg~DPElr~T~~Gk~VA~ftLAV~r~~~T~wI~Vv~wGkLA---E---~aakhLKKGD~V~VeGRL~srs~ed 144 (315)
.|.|.|+|.. +|.. |+.++.+.|.- .+--++|++-.+.. + .+.+.|..||.|.|+|.+.... ++
T Consensus 57 ~V~v~Grv~~---~R~~--gkk~~F~~LrD----~sg~iQvv~~~~~~~~~~~~~~~~~~l~~gd~V~V~G~v~~t~-~g 126 (521)
T 3bju_A 57 TLKVAGRIHA---KRAS--GGKLIFYDLRG----EGVKLQVMANSRNYKSEEEFIHINNKLRRGDIIGVQGNPGKTK-KG 126 (521)
T ss_dssp CEEEEEEEEE---EEES--SSSEEEEEEEE----TTEEEEEEEEGGGSSCHHHHHHHHHHCCTTCEEEEEEEEEECT-TC
T ss_pred EEEEEEEEEE---EecC--CCCcEEEEEEE----CCEEEEEEEECCccCCHHHHHHHHhcCCCCCEEEEEEEEEecC-CC
Confidence 5999999973 5553 52355555443 34579998865421 1 2335799999999999998764 22
Q ss_pred CCeEEEEEEEeEEeeecCC
Q 021274 145 EGQANVQVMVHSLNLIEPT 163 (315)
Q Consensus 145 k~rs~~eVvVe~I~FV~~k 163 (315)
.++|.|+++..+.+.
T Consensus 127 ----e~ei~~~~i~~l~~~ 141 (521)
T 3bju_A 127 ----ELSIIPYEITLLSPC 141 (521)
T ss_dssp ----CEEEEEEEEEEEECC
T ss_pred ----CEEEEEeEEEEeecC
Confidence 489999999998754
No 50
>1n9w_A Aspartyl-tRNA synthetase 2; biosynthetic protein; 2.30A {Thermus thermophilus} SCOP: b.40.4.1 d.104.1.1 PDB: 3kfu_A*
Probab=69.80 E-value=34 Score=33.30 Aligned_cols=74 Identities=14% Similarity=0.298 Sum_probs=53.3
Q ss_pred cEEEEEEEeCCCceEEEcCCCcEEEEEEEEEcCCCCCeEEEEEEecchHHHHHhhcC-CCCeEEEEEEeEecCCCcCCeE
Q 021274 70 NSVNLIGHVDAPVQFQTSSDGKHWAGTVIVQHAASHSLWIPILFEGDLAHIASSHLK-KDDHVHIAGQLTADPPAIEGQA 148 (315)
Q Consensus 70 NsV~LIGrLg~DPElr~T~~Gk~VA~ftLAV~r~~~T~wI~Vv~wGkLAE~aakhLK-KGD~V~VeGRL~srs~edk~rs 148 (315)
..|.|.|+|.+ +|.. |+ ++...|.- .+-.++|++-. +.|. .||.|.|+|.+..+.- +..
T Consensus 14 ~~V~v~Gwv~~---~R~~--g~-~~F~~lrD----~~g~iQ~v~~~-------~~l~~~~~~v~v~G~v~~~~~---~~~ 73 (422)
T 1n9w_A 14 QEVELLGFLHW---RRDL--GR-IQFLLLRD----RSGVVQVVTGG-------LKLPLPESALRVRGLVVENAK---APG 73 (422)
T ss_dssp SEEEEEEEEEE---EEEC--SS-EEEEEEEE----TTEEEEEEEES-------CCCCCTTCEEEEEEEEEECTT---STT
T ss_pred CEEEEEEEEEE---EecC--CC-eEEEEEEE----CCEEEEEEEEc-------cccCCCCCEEEEEEEEEecCC---CCc
Confidence 45999999973 5553 55 55444443 34458888754 6799 9999999999987742 123
Q ss_pred EEEEEEeEEeeecCC
Q 021274 149 NVQVMVHSLNLIEPT 163 (315)
Q Consensus 149 ~~eVvVe~I~FV~~k 163 (315)
.++|.|+++..+.+.
T Consensus 74 ~~el~~~~~~vl~~~ 88 (422)
T 1n9w_A 74 GLEVQAKEVEVLSPA 88 (422)
T ss_dssp SEEEEEEEEEEEECC
T ss_pred cEEEEEeEEEEeccC
Confidence 589999999999754
No 51
>2xgt_A Asparaginyl-tRNA synthetase, cytoplasmic; ligase, ATP-binding, protein biosynthesis; HET: NSS; 1.90A {Brugia malayi} PDB: 2xti_A*
Probab=69.36 E-value=28 Score=33.97 Aligned_cols=82 Identities=13% Similarity=0.238 Sum_probs=53.3
Q ss_pred EEEEEEEeCCCceEEEcCCCcEEEEEEEEEcCCCCCeEEEEEEecchHHH-HHhhcCCCCeEEEEEEeEecCCCcC-CeE
Q 021274 71 SVNLIGHVDAPVQFQTSSDGKHWAGTVIVQHAASHSLWIPILFEGDLAHI-ASSHLKKDDHVHIAGQLTADPPAIE-GQA 148 (315)
Q Consensus 71 sV~LIGrLg~DPElr~T~~Gk~VA~ftLAV~r~~~T~wI~Vv~wGkLAE~-aakhLKKGD~V~VeGRL~srs~edk-~rs 148 (315)
.|.|.|+|.+ +|.. |+.++.+.|.- .+-.++|++-+++.+. ....|..||.|.|+|.+..+. .+. ..-
T Consensus 13 ~V~v~Gwv~~---~R~~--Gk~~~Fi~LrD----~~g~iQvv~~~~~~~~~~~~~l~~~~~v~v~G~v~~~~-~~~~~~g 82 (435)
T 2xgt_A 13 RVCIKGWIHR---MRRQ--GKSLMFFILRD----GTGFLQVLLMDKLCQTYDALTVNTECTVEIYGAIKEVP-EGKEAPN 82 (435)
T ss_dssp EEEEEEEEEE---EEEC--TTSEEEEEEEC----SSCEEEEEEEGGGGSSHHHHHCCTTCEEEEEEEEEECC-------T
T ss_pred EEEEEEEEEE---eccc--CCCcEEEEEEE----CCceEEEEECCcchhHHHHhcCCCCCEEEEEEEEEecC-CCcCCCC
Confidence 5999999973 5553 43355444433 3446999887654321 112699999999999998753 111 122
Q ss_pred EEEEEEeEEeeecC
Q 021274 149 NVQVMVHSLNLIEP 162 (315)
Q Consensus 149 ~~eVvVe~I~FV~~ 162 (315)
.++|.|+++..+..
T Consensus 83 ~~El~~~~~~vl~~ 96 (435)
T 2xgt_A 83 GHELIADFWKIIGN 96 (435)
T ss_dssp TEEEEEEEEEEEEC
T ss_pred cEEEEEEEEEEeec
Confidence 48999999999985
No 52
>1jmc_A Protein (replication protein A (RPA)); human ssDNA binding replication protein A(RPA), single stranded DNA-binding protein, protein-ssDNA complex; HET: DNA; 2.40A {Homo sapiens} SCOP: b.40.4.3 b.40.4.3 PDB: 1fgu_A
Probab=68.05 E-value=16 Score=32.02 Aligned_cols=67 Identities=18% Similarity=0.078 Sum_probs=40.5
Q ss_pred EEEEEEEeCC--CceEEEc-CCCcEEEEEEEEEcCCCCCe-EEEEEEecchHHHHHhhcCCCCeEEEEEEeEecCC
Q 021274 71 SVNLIGHVDA--PVQFQTS-SDGKHWAGTVIVQHAASHSL-WIPILFEGDLAHIASSHLKKDDHVHIAGQLTADPP 142 (315)
Q Consensus 71 sV~LIGrLg~--DPElr~T-~~Gk~VA~ftLAV~r~~~T~-wI~Vv~wGkLAE~aakhLKKGD~V~VeGRL~srs~ 142 (315)
.|.+||.|.. +++...+ .+|+....-.+...+ .+. -++|++||+.|+.+. ...|+-|.+.|--. ..|
T Consensus 140 ~vDViG~V~~v~~~~~~~~k~~g~~~~~r~~~l~D--~sg~~i~~tLWg~~a~~~~--~~~~~vv~i~~~~v-~~f 210 (246)
T 1jmc_A 140 LVDIIGICKSYEDATKITVRSNNREVAKRNIYLMD--TSGKVVTATLWGEDADKFD--GSRQPVLAIKGARV-SDF 210 (246)
T ss_dssp EEEEEEEEEEECCCEEEEETTTTEEEEEEEEEEEC--TTCCEEEEEEEHHHHHHCC--CTTCCEEEEEEEEE-ECT
T ss_pred ceeEEEEEEEecCeEEEEEecCCCccEEEEEEEEC--CCCCEEEEEEEchhhhhcc--cCCCCEEEEEEEEE-Eec
Confidence 4888888763 2222222 256554444444433 333 599999999998753 57788777766433 445
No 53
>2pi2_A Replication protein A 32 kDa subunit; FULL-length RPA14/32, ssDNA binding protein, OB-fold, dioxan replication, DNA binding protein; 2.00A {Homo sapiens} SCOP: b.40.4.3 PDB: 2z6k_A 1dpu_A 1z1d_A
Probab=66.81 E-value=18 Score=32.96 Aligned_cols=56 Identities=11% Similarity=0.068 Sum_probs=39.0
Q ss_pred CCe-EEEEEEecchHHH--HHhhcCCCCeEEEEEEeEecCCCcCCeEEEEEEEeEEeeecCCccc
Q 021274 105 HSL-WIPILFEGDLAHI--ASSHLKKDDHVHIAGQLTADPPAIEGQANVQVMVHSLNLIEPTSQK 166 (315)
Q Consensus 105 ~T~-wI~Vv~wGkLAE~--aakhLKKGD~V~VeGRL~srs~edk~rs~~eVvVe~I~FV~~k~q~ 166 (315)
.|- -|.|.+|.+..+. ....++.|+.|.|.|+|+... + ..+|.+..|.-+...+..
T Consensus 97 ~TG~~I~~k~W~~~~~~~~~~~~~~~G~yVrV~G~v~~f~--g----~~qi~i~~ir~v~d~nEi 155 (270)
T 2pi2_A 97 MTAAPMDVRQWVDTDDTSSENTVVPPETYVKVAGHLRSFQ--N----KKSLVAFKIMPLEDMNEF 155 (270)
T ss_dssp SSSSCEEEEEECC-------CCCCCTTCEEEEEEEEEEET--T----EEEEEEEEEEECSCTHHH
T ss_pred CCCCEEEEEEEcCcCcccchhhcCCCCCEEEEEEEEEecC--C----eeEEEEEEEEecCCHhHH
Confidence 565 7999999876442 245689999999999999742 2 356777788878776643
No 54
>3kf8_A Protein STN1; OB fold; 2.40A {Candida tropicalis mya-3404}
Probab=65.86 E-value=25 Score=31.88 Aligned_cols=102 Identities=9% Similarity=0.065 Sum_probs=64.1
Q ss_pred cCCCCCCccEEEEEEEeCCCceEEEcCCCcEEEEEEEEEcCCC-CCeEEEEEEecchHHHHHhh---cCCCCeEEEEEEe
Q 021274 62 IPFQVKVANSVNLIGHVDAPVQFQTSSDGKHWAGTVIVQHAAS-HSLWIPILFEGDLAHIASSH---LKKDDHVHIAGQL 137 (315)
Q Consensus 62 I~wqp~l~NsV~LIGrLg~DPElr~T~~Gk~VA~ftLAV~r~~-~T~wI~Vv~wGkLAE~aakh---LKKGD~V~VeGRL 137 (315)
+=|...-+|.|.++|.|..--+.-....|.-..++.+.+.+.+ ....+.|.+--..+-.+.-- .--|..|-|.|.+
T Consensus 78 ~f~~NhPI~~V~IvG~VVg~~~k~~r~~~~~~~~~~l~IDDsSG~~s~i~~k~~~~~~~~~gl~l~~~~~G~iV~VkG~i 157 (220)
T 3kf8_A 78 VLVNNYPVNQINIFGKIVYEQYKEKEFNGVEESYVILVISDFIGIDSKIRVRLSQEQFKEVGLTLDKKNYGKIVELEGEI 157 (220)
T ss_dssp EEETTEEECEEEEEEEEEEEEEECCBCSSCBCCEEEEEEECCCSSSCEEEEEEEHHHHHTTTCCTTSCCTTCEEEEEEEE
T ss_pred EEECCcccEEEEEEEEEEEEEEEeccccccccceEEEEEeCCCCCCceEEEEecHHHhhccCccccccCCCeEEEEEEEE
Confidence 3344455889999999986433222223444455667777733 34567776655443222211 2358999999999
Q ss_pred EecC--CCcCCeEEEEEEEeEEeeecCC
Q 021274 138 TADP--PAIEGQANVQVMVHSLNLIEPT 163 (315)
Q Consensus 138 ~srs--~edk~rs~~eVvVe~I~FV~~k 163 (315)
.... +...+...-||.|+.|.+++..
T Consensus 158 ~~~r~~~~~~~~~~rei~ve~i~vl~~~ 185 (220)
T 3kf8_A 158 YNWYDSINVSKKPDRELKVSKITVLSHR 185 (220)
T ss_dssp EECCCSTTTTSCCCEEEEEEEEEEEESS
T ss_pred EeeccccccccccceEEEEEEEEEeccC
Confidence 9852 2222454559999999999876
No 55
>1wjj_A Hypothetical protein F20O9.120; DNA-binding protein-related, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: b.40.4.3
Probab=65.77 E-value=10 Score=32.21 Aligned_cols=60 Identities=12% Similarity=0.023 Sum_probs=42.5
Q ss_pred ccEEEEEEEeCCCceEE---Ec--CCC--------cEEEEEEEEEcCCCCCeEEEEEEecchHHHHHhhcCCCCeEEEEE
Q 021274 69 ANSVNLIGHVDAPVQFQ---TS--SDG--------KHWAGTVIVQHAASHSLWIPILFEGDLAHIASSHLKKDDHVHIAG 135 (315)
Q Consensus 69 ~NsV~LIGrLg~DPElr---~T--~~G--------k~VA~ftLAV~r~~~T~wI~Vv~wGkLAE~aakhLKKGD~V~VeG 135 (315)
.+.|+|+|+|-.--+.+ .. .+| ..++...|+- +|--|++++|++.|+ .++.||.|.+.+
T Consensus 26 ~~~v~l~~kVl~~~~v~~~~~~~R~dG~~~~~~r~~~V~~~lVgD----eTG~I~ftlW~e~~~----~l~~Gd~v~i~n 97 (145)
T 1wjj_A 26 TTGHTLTVKVIEANIVVPVTRKTRPASSLSRPSQPSRIVECLIGD----ETGCILFTARNDQVD----LMKPGATVILRN 97 (145)
T ss_dssp CCCEEEEEEEEEEEECCSSSSCCSCSSCCSSCCCCCCCEEEEEEC----SSCEEEEEECTTHHH----HTCTTCEEEEEE
T ss_pred CCceEEEEEEEEcccccccccccccCCccccccCCceEEEEEEEc----CCcEEEEEEecCCcC----cCCCCCEEEEec
Confidence 46688888886543333 22 134 2567766664 778899999999875 488999999987
Q ss_pred E
Q 021274 136 Q 136 (315)
Q Consensus 136 R 136 (315)
-
T Consensus 98 a 98 (145)
T 1wjj_A 98 S 98 (145)
T ss_dssp E
T ss_pred c
Confidence 4
No 56
>3i7f_A Aspartyl-tRNA synthetase; tRNA ligase, APO, ATP-binding, aminoacyl-tRNA synthetase, LI nucleotide-binding, protein biosynthesis; 2.80A {Entamoeba histolytica}
Probab=63.68 E-value=70 Score=32.48 Aligned_cols=84 Identities=17% Similarity=0.209 Sum_probs=57.2
Q ss_pred cEEEEEEEeCCCceEEEcCCCcEEEEEEEEEcCCCCCeEEEEEEecc--hH---HHHHhhcCCCCeEEEEEEeEecCCCc
Q 021274 70 NSVNLIGHVDAPVQFQTSSDGKHWAGTVIVQHAASHSLWIPILFEGD--LA---HIASSHLKKDDHVHIAGQLTADPPAI 144 (315)
Q Consensus 70 NsV~LIGrLg~DPElr~T~~Gk~VA~ftLAV~r~~~T~wI~Vv~wGk--LA---E~aakhLKKGD~V~VeGRL~srs~ed 144 (315)
..|.|.|+|.+ +|. .|+ ++.+.|.- .+..++|++-.+ .. ...++.|..||.|.|+|.+....-..
T Consensus 63 ~~V~v~Gwv~~---~R~--~gk-l~Fi~LrD----~~g~iQ~v~~~~~~~~~~~~~~~~~l~~es~V~V~G~v~~~~~~~ 132 (548)
T 3i7f_A 63 KTVTIRARVQA---VRG--KGN-MVFLFLRK----GIYTCQALVMKSETISKEFVQFCQKISAESICDITGIVKAVEKPI 132 (548)
T ss_dssp CEEEEEEEEEE---EEE--CSS-EEEEEEEE----TTEEEEEEEECSSSSCHHHHHHHHTCCTTEEEEEEEEEEECSSCC
T ss_pred CEEEEEEEEEE---Eec--CCC-eEEEEEEE----CCeeEEEEEECCCccCHHHHHHHhCCCCCCEEEEEEEEEeCCccc
Confidence 35999999973 444 343 55555543 345888888752 11 12356799999999999999864222
Q ss_pred C--CeEEEEEEEeEEeeecCC
Q 021274 145 E--GQANVQVMVHSLNLIEPT 163 (315)
Q Consensus 145 k--~rs~~eVvVe~I~FV~~k 163 (315)
+ ....++|.|++|..+...
T Consensus 133 ~~~~~~~~El~~~~i~vls~a 153 (548)
T 3i7f_A 133 EKATQQDVEIHVTSIAVVSLA 153 (548)
T ss_dssp TTSSSCSEEEEEEEEEEEECC
T ss_pred ccCCCCcEEEEEeEEEEEecC
Confidence 2 245699999999999765
No 57
>3au7_A TIAS, putative uncharacterized protein; ATP hydrolysis, RNA binding protein; 2.60A {Archaeoglobus fulgidus} PDB: 3amt_A* 3amu_A*
Probab=63.24 E-value=48 Score=32.53 Aligned_cols=77 Identities=16% Similarity=0.069 Sum_probs=55.7
Q ss_pred CCccEEEEEEEeCCCceEEEcCCCcEEEEEEEEEcCCCCCeEEEEEEec--chHHHHHhhcCCCCeEEEEEEeEecCCCc
Q 021274 67 KVANSVNLIGHVDAPVQFQTSSDGKHWAGTVIVQHAASHSLWIPILFEG--DLAHIASSHLKKDDHVHIAGQLTADPPAI 144 (315)
Q Consensus 67 ~l~NsV~LIGrLg~DPElr~T~~Gk~VA~ftLAV~r~~~T~wI~Vv~wG--kLAE~aakhLKKGD~V~VeGRL~srs~ed 144 (315)
+.+-++.+.|.|...|... .+|- +.|+|.. .+.-|+|.+|. +-...+...|..||.|.|.|.+..
T Consensus 282 ~~~~~~~v~G~V~~~P~~~--~GGH--V~f~l~d----~~~~i~c~ayeptk~fr~~vr~L~~GD~V~v~G~v~~----- 348 (402)
T 3au7_A 282 ENYRSYRLRGRVTLEPYDI--EGGH--VFFEIDT----KFGSVKCAAFEPTKQFRNVIRLLRKGDVVEVYGSMKK----- 348 (402)
T ss_dssp CTTCEEEEEEEEEEEEEEE--TTTE--EEEEEEE----TTEEEEEEECGGGTTHHHHHTTCCTTCEEEEEEEEET-----
T ss_pred ccCceEEEEEEEecCcEec--cCce--EEEEEEc----CCCEEEEEEEccchHHHHHHhcCCCCCEEEEEEeecC-----
Confidence 4567889999998766553 3554 3455554 35679999999 556667778999999999999664
Q ss_pred CCeEEEEEEEeEEeeec
Q 021274 145 EGQANVQVMVHSLNLIE 161 (315)
Q Consensus 145 k~rs~~eVvVe~I~FV~ 161 (315)
+ .+.++.+.-+.
T Consensus 349 -g----tLnvEk~~v~~ 360 (402)
T 3au7_A 349 -D----TINLEKIQIVE 360 (402)
T ss_dssp -T----EEEEEEEEEEE
T ss_pred -C----EEEEEEEEEcc
Confidence 2 56677776664
No 58
>1l0w_A Aspartyl-tRNA synthetase; space-grown crystal, dimeric enzyme, flexible domains, ligase; 2.01A {Thermus thermophilus} SCOP: b.40.4.1 d.74.4.1 d.104.1.1 PDB: 1efw_A* 1g51_A
Probab=60.79 E-value=50 Score=33.59 Aligned_cols=83 Identities=14% Similarity=0.161 Sum_probs=55.0
Q ss_pred EEEEEEEeCCCceEEEcCCCcEEEEEEEEEcCCCCCeEEEEEEecch-HHHHHhhcCCCCeEEEEEEeEecCCCc-C-Ce
Q 021274 71 SVNLIGHVDAPVQFQTSSDGKHWAGTVIVQHAASHSLWIPILFEGDL-AHIASSHLKKDDHVHIAGQLTADPPAI-E-GQ 147 (315)
Q Consensus 71 sV~LIGrLg~DPElr~T~~Gk~VA~ftLAV~r~~~T~wI~Vv~wGkL-AE~aakhLKKGD~V~VeGRL~srs~ed-k-~r 147 (315)
.|.|.|+|. ..|.. |+ ++.+.|.- .+-.++|++-.+. +-..++.|..||.|.|+|.+..+.-.. + ..
T Consensus 18 ~V~l~GwV~---~~R~~--G~-~~Fi~LrD----~~g~iQvv~~~~~~~~~~~~~l~~e~~V~V~G~v~~~~~~~~~~~~ 87 (580)
T 1l0w_A 18 EVVLEGWVN---RRRDL--GG-LIFLDLRD----REGLVQLVAHPASPAYATAERVRPEWVVRAKGLVRLRPEPNPRLAT 87 (580)
T ss_dssp EEEEEEEEE---EEEEC--SS-CEEEEEEE----TTEEEEEEECTTSTTHHHHTTCCTTCEEEEEEEEEECSSCCTTSTT
T ss_pred EEEEEEEEE---EEecC--CC-eEEEEEEE----CCeeEEEEEeCChhHHHHHhcCCCCcEEEEEEEEEcCCCcCccCCC
Confidence 599999997 34543 43 34444443 3456888886542 112346799999999999999875111 1 22
Q ss_pred EEEEEEEeEEeeecCC
Q 021274 148 ANVQVMVHSLNLIEPT 163 (315)
Q Consensus 148 s~~eVvVe~I~FV~~k 163 (315)
-.++|.|+++..+...
T Consensus 88 ge~Ei~~~~i~vl~~a 103 (580)
T 1l0w_A 88 GRVEVELSALEVLAEA 103 (580)
T ss_dssp TTEEEEEEEEEEEECC
T ss_pred ccEEEEEeEEEEeccC
Confidence 3489999999988754
No 59
>3a74_A Lysyl-tRNA synthetase; aminoacyl tRNA synthetase, ligase, protein biosynthesis, AMI tRNA synthetase, ATP-binding, magnesium; HET: B4P LYN; 1.80A {Geobacillus stearothermophilus} PDB: 3e9h_A* 3e9i_A*
Probab=60.77 E-value=79 Score=31.40 Aligned_cols=78 Identities=18% Similarity=0.180 Sum_probs=54.2
Q ss_pred EEEEEEEeCCCceEEEcCCCcEEEEEEEEEcCCCCCeEEEEEEecc-hHH---HHHhhcCCCCeEEEEEEeEecCCCcCC
Q 021274 71 SVNLIGHVDAPVQFQTSSDGKHWAGTVIVQHAASHSLWIPILFEGD-LAH---IASSHLKKDDHVHIAGQLTADPPAIEG 146 (315)
Q Consensus 71 sV~LIGrLg~DPElr~T~~Gk~VA~ftLAV~r~~~T~wI~Vv~wGk-LAE---~aakhLKKGD~V~VeGRL~srs~edk~ 146 (315)
.|.|.|+|.+ +|.. |+ ++.+.|.- .+-.++|++-.+ +.+ ...+.|..||.|.|+|.+.... + +
T Consensus 58 ~V~v~Gwv~~---~R~~--gk-~~F~~LrD----~sg~iQvv~~~~~~~~~~~~~~~~l~~g~~v~V~G~v~~~~-~--g 124 (493)
T 3a74_A 58 EVAVAGRIMT---KRGM--GK-AGFAHIQD----VTGQIQIYVRQDDVGEQQYELFKISDLGDIVGVRGTMFKTK-V--G 124 (493)
T ss_dssp EEEEEEEEEE---EEEE--TT-EEEEEEEE----TTEEEEEEEEHHHHHHHHHHHHHHCCTTCEEEEEEEEEECT-T--C
T ss_pred EEEEEEEEEE---EecC--CC-cEEEEEEE----CCEeEEEEEECCcCCHHHHHHHhcCCCCCEEEEEEEEEeCC-C--C
Confidence 5999999974 4543 44 34444433 344799988654 222 2336799999999999998763 1 2
Q ss_pred eEEEEEEEeEEeeecCC
Q 021274 147 QANVQVMVHSLNLIEPT 163 (315)
Q Consensus 147 rs~~eVvVe~I~FV~~k 163 (315)
.++|.|+++..+.+.
T Consensus 125 --e~ei~~~~i~vl~~~ 139 (493)
T 3a74_A 125 --ELSIKVSSYEFLTKA 139 (493)
T ss_dssp --CEEEEEEEEEEEECC
T ss_pred --cEEEEEEEEEEcccc
Confidence 489999999999754
No 60
>1c0a_A Aspartyl tRNA synthetase; protein-RNA complex, ligase/RNA complex; HET: 4SU H2U QUO G7M 5MU PSU AMP AMO; 2.40A {Escherichia coli} SCOP: b.40.4.1 d.74.4.1 d.104.1.1 PDB: 1il2_A* 1eqr_A*
Probab=60.70 E-value=59 Score=33.03 Aligned_cols=83 Identities=19% Similarity=0.316 Sum_probs=55.7
Q ss_pred EEEEEEEeCCCceEEEcCCCcEEEEEEEEEcCCCCCeEEEEEEecchHH--HHHhhcCCCCeEEEEEEeEecCCCc---C
Q 021274 71 SVNLIGHVDAPVQFQTSSDGKHWAGTVIVQHAASHSLWIPILFEGDLAH--IASSHLKKDDHVHIAGQLTADPPAI---E 145 (315)
Q Consensus 71 sV~LIGrLg~DPElr~T~~Gk~VA~ftLAV~r~~~T~wI~Vv~wGkLAE--~aakhLKKGD~V~VeGRL~srs~ed---k 145 (315)
.|.|.|+|. ..|.. |+ ++.+.|.- .+-.++|++-.+..+ ..++.|..||.|.|+|.+..+.-.. +
T Consensus 17 ~V~l~GwV~---~~R~~--G~-~~Fi~LrD----~~g~iQvv~~~~~~~~~~~~~~l~~e~~V~V~G~v~~~~~~~~n~~ 86 (585)
T 1c0a_A 17 QVTLCGWVN---RRRDL--GS-LIFIDMRD----REGIVQVFFDPDRADALKLASELRNEFCIQVTGTVRARDEKNINRD 86 (585)
T ss_dssp EEEEEEEEE---EEEEC--SS-CEEEEEEE----TTEEEEEEECGGGHHHHHHHTTCCTTCEEEEEEEEEECCTTTCCTT
T ss_pred EEEEEEEEE---EEecC--CC-cEEEEEEE----CCeeEEEEEeCCchHHHHHHhcCCCCCEEEEEeEEEccCccccccc
Confidence 599999997 34543 43 34444443 345699988655432 2346799999999999998773211 1
Q ss_pred -CeEEEEEEEeEEeeecCC
Q 021274 146 -GQANVQVMVHSLNLIEPT 163 (315)
Q Consensus 146 -~rs~~eVvVe~I~FV~~k 163 (315)
..-.++|.|+++..+...
T Consensus 87 ~~~geiEl~~~~i~vl~~a 105 (585)
T 1c0a_A 87 MATGEIEVLASSLTIINRA 105 (585)
T ss_dssp STTTTEEEEEEEEEEEECC
T ss_pred CCCccEEEEEeEEEEEecc
Confidence 223489999999998754
No 61
>2kbn_A Conserved protein; nucleic acid binding protein, beta barrel, structural genomics, PSI-2, protein structure initiative; NMR {Methanosarcina mazei} PDB: 2ken_A
Probab=60.58 E-value=43 Score=26.30 Aligned_cols=62 Identities=8% Similarity=-0.048 Sum_probs=41.6
Q ss_pred ccEEEEEEEeCCCceEEEcCCCcEEEEEEEEEcCCCCCeEEEEEEecchHHHHHhhcCCCCeEEEE-EEeEec
Q 021274 69 ANSVNLIGHVDAPVQFQTSSDGKHWAGTVIVQHAASHSLWIPILFEGDLAHIASSHLKKDDHVHIA-GQLTAD 140 (315)
Q Consensus 69 ~NsV~LIGrLg~DPElr~T~~Gk~VA~ftLAV~r~~~T~wI~Vv~wGkLAE~aakhLKKGD~V~Ve-GRL~sr 140 (315)
...|.++|+|-. +....+|.......|+ ++|--|++++|++- .+..++.||.|.|. |+....
T Consensus 15 ~~~v~v~~~V~~---~~~~~~~~~~~~~~l~----DeTG~I~~t~W~~~---~~~~~~~G~~V~i~n~~v~~~ 77 (109)
T 2kbn_A 15 GQWANLKAKVIQ---LWENTHESISQVGLLG----DETGIIKFTIWKNA---ELPLLEQGESYLLRSVVVGEY 77 (109)
T ss_dssp TCEEEEEEEEEE---EEECCCSSEEEEEEEE----CTTCCEEEEEEGGG---CCCCCCTTCEEEEEEEEEEEE
T ss_pred CCcEEEEEEEEE---eEcCCCCeEEEEEEEE----CCCCeEEEEEECcc---cccccCCCCEEEEEEEEEEEE
Confidence 456899998864 3233345444333343 35668999999944 23579999999999 677653
No 62
>1e1o_A Lysyl-tRNA synthetase, heat inducible; ligase, aminoacyl-tRNA synthetase, protein biosynthesis; HET: LYS; 2.12A {Escherichia coli} SCOP: b.40.4.1 d.104.1.1 PDB: 1e1t_A* 1e22_A* 1e24_A* 1lyl_A 1bbu_A* 1bbw_A 1krs_A 1krt_A
Probab=59.67 E-value=73 Score=31.81 Aligned_cols=78 Identities=17% Similarity=0.199 Sum_probs=53.8
Q ss_pred EEEEEEEeCCCceEEEcCCCcEEEEEEEEEcCCCCCeEEEEEEecc-hHH---H-HHhhcCCCCeEEEEEEeEecCCCcC
Q 021274 71 SVNLIGHVDAPVQFQTSSDGKHWAGTVIVQHAASHSLWIPILFEGD-LAH---I-ASSHLKKDDHVHIAGQLTADPPAIE 145 (315)
Q Consensus 71 sV~LIGrLg~DPElr~T~~Gk~VA~ftLAV~r~~~T~wI~Vv~wGk-LAE---~-aakhLKKGD~V~VeGRL~srs~edk 145 (315)
.|.|.|+|-+ +|.. |+ ++.+.|.- .+-.++|++-.+ +.+ . .++.|..||.|.|+|.+.... +
T Consensus 66 ~V~v~Gwv~~---~R~~--gk-~~F~~LrD----~sg~iQvv~~~~~~~~~~~~~~~~~l~~g~~V~V~G~v~~~~-~-- 132 (504)
T 1e1o_A 66 EVSVAGRMMT---RRIM--GK-ASFVTLQD----VGGRIQLYVARDSLPEGVYNDQFKKWDLGDIIGARGTLFKTQ-T-- 132 (504)
T ss_dssp EEEEEEEEEE---EEEE--TT-EEEEEEEE----TTEEEEEEEETTTSSTTHHHHTGGGCCTTCEEEEEEEEEECT-T--
T ss_pred EEEEEEEEEE---EecC--CC-cEEEEEEE----CCeeEEEEEECCcCCHHHHHHHHhcCCCCCEEEEEEEEEecC-C--
Confidence 5999999974 4553 44 34444433 344799988644 211 1 346799999999999998763 1
Q ss_pred CeEEEEEEEeEEeeecCC
Q 021274 146 GQANVQVMVHSLNLIEPT 163 (315)
Q Consensus 146 ~rs~~eVvVe~I~FV~~k 163 (315)
+ .++|.|+++..+...
T Consensus 133 g--e~ei~~~~i~vl~~a 148 (504)
T 1e1o_A 133 G--ELSIHCTELRLLTKA 148 (504)
T ss_dssp C--CEEEEEEEEEEEECC
T ss_pred c--eEEEEEEEEEEeccc
Confidence 2 589999999999754
No 63
>3kf6_A Protein STN1; OB fold, chromosomal protein, DNA-binding, nucleus, telomere; 1.65A {Schizosaccharomyces pombe}
Probab=56.13 E-value=94 Score=26.41 Aligned_cols=88 Identities=11% Similarity=0.191 Sum_probs=58.0
Q ss_pred CCCCCccEEEEEEEeCCCceEEEcCCCcEEEEEEEEEcCCCCCeEEEEEEecch-H--HHHHhhcCCCCeEEEEEEeEec
Q 021274 64 FQVKVANSVNLIGHVDAPVQFQTSSDGKHWAGTVIVQHAASHSLWIPILFEGDL-A--HIASSHLKKDDHVHIAGQLTAD 140 (315)
Q Consensus 64 wqp~l~NsV~LIGrLg~DPElr~T~~Gk~VA~ftLAV~r~~~T~wI~Vv~wGkL-A--E~aakhLKKGD~V~VeGRL~sr 140 (315)
|...-++.|.|+|.|.. .+ .. + + +....+.+.. ..-|.|++|-+. + ......+..|+.|-|.|+|++.
T Consensus 42 ~~n~PI~~V~IvGiVv~-~~--~~-~-~---~~~ytIDD~T-G~~I~cv~w~~~~~~~~~~~~~l~~G~~VrV~G~v~~f 112 (159)
T 3kf6_A 42 WMGFPIRWIQIVGYIAA-ID--IY-E-G---KHVLTVDDCS-GMVLRVVFIIQDDFSMSKRAISMSPGNVVCVFGKINSF 112 (159)
T ss_dssp ETTEEECEEEEEEEEEE-EE--EE-T-T---EEEEEEECSS-SCEEEEEEEGGGCHHHHHHHTTCCTTCEEEEEEEEECS
T ss_pred ECCeEEEEEEEEEEEEE-EE--Ee-C-C---EEEEEEecCC-CCeEEEEEEccCCCCcccccccCCCCCEEEEEEEEEee
Confidence 44444888999999986 22 21 1 2 2344554422 237999999876 2 2234458899999999999874
Q ss_pred CCCcCCeEEEEEEEeEEeeecCCccc
Q 021274 141 PPAIEGQANVQVMVHSLNLIEPTSQK 166 (315)
Q Consensus 141 s~edk~rs~~eVvVe~I~FV~~k~q~ 166 (315)
. ++ -+|.|+.+..+...++.
T Consensus 113 r--~~----rqI~~~~i~~v~d~n~E 132 (159)
T 3kf6_A 113 R--SE----VELIAQSFEELRDPNDE 132 (159)
T ss_dssp S--SS----CEEEEEEEEEECSTHHH
T ss_pred C--CE----EEEEEEEEEECCCcHHH
Confidence 2 22 37888888888876643
No 64
>2vl6_A SSO MCM N-TER, minichromosome maintenance protein MCM; helicase, hydrolase, zinc-finger, ATP-binding, DNA-BIND ssDNA binding; 2.8A {Sulfolobus solfataricus}
Probab=47.95 E-value=51 Score=29.57 Aligned_cols=52 Identities=19% Similarity=0.324 Sum_probs=37.5
Q ss_pred CeEEEEEEecchHHHHHhhcCCCCeEEEEEEeEecCCC--c-C--CeEEEEEEEeEEeeec
Q 021274 106 SLWIPILFEGDLAHIASSHLKKDDHVHIAGQLTADPPA--I-E--GQANVQVMVHSLNLIE 161 (315)
Q Consensus 106 T~wI~Vv~wGkLAE~aakhLKKGD~V~VeGRL~srs~e--d-k--~rs~~eVvVe~I~FV~ 161 (315)
.--+.|.+-++|.+ .++.||+|.|.|-+...... . . ....+-|.|++|..++
T Consensus 210 Prsi~v~l~~dLvd----~~~PGDrV~vtGI~~~~~~~~~~~~~~~~~~~yl~an~I~~~~ 266 (268)
T 2vl6_A 210 PRQLEIILEDDLVD----SARPGDRVKVTGILDIKQDSPVKRGSRAVFDIYMKVSSIEVSQ 266 (268)
T ss_dssp CCEEEEEEEGGGTT----SSCTTCEEEEEEEEEEECSSTTCCSSCCEEEEEEEEEEEEEC-
T ss_pred CcEEEEEEccCccC----cccCCCEEEEEEEEEEeecccccCCCceEEEEEEEEEEEEEec
Confidence 46899999999975 57899999999999886443 1 1 2345566777776543
No 65
>4hik_A Protection of telomeres protein 1; specificity, plasticity, promiscuity, OB-fold, ssDNA binding stranded telomeric DNA; HET: DNA; 1.64A {Schizosaccharomyces pombe} PDB: 4hid_A* 4him_A* 4hio_A* 4hj5_A* 4hj7_A* 4hj8_A* 4hj9_A* 4hja_A*
Probab=46.82 E-value=13 Score=31.41 Aligned_cols=26 Identities=15% Similarity=0.152 Sum_probs=24.1
Q ss_pred EEEEEEecchHHHHHhhcCCCCeEEE
Q 021274 108 WIPILFEGDLAHIASSHLKKDDHVHI 133 (315)
Q Consensus 108 wI~Vv~wGkLAE~aakhLKKGD~V~V 133 (315)
=++|++|+.-|..|.++|+.||-|.+
T Consensus 66 tlqVtlwd~ha~~ar~~lk~Gd~v~L 91 (143)
T 4hik_A 66 SIRCILWDEHDFYCRNYIKEGDYVVM 91 (143)
T ss_dssp CEEEEECHHHHHHHTTTCCTTCEEEE
T ss_pred EEEEEEECcHHHHHHhhCCCCCEEEE
Confidence 37999999999999999999999986
No 66
>4ex5_A Lysine--tRNA ligase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: LYS; 2.40A {Burkholderia thailandensis}
Probab=46.57 E-value=1.7e+02 Score=29.47 Aligned_cols=78 Identities=19% Similarity=0.144 Sum_probs=52.7
Q ss_pred EEEEEEEeCCCceEEEcCCCcEEEEEEEEEcCCCCCeEEEEEEecch-HH---HHHhhcCCCCeEEEEEEeEecCCCcCC
Q 021274 71 SVNLIGHVDAPVQFQTSSDGKHWAGTVIVQHAASHSLWIPILFEGDL-AH---IASSHLKKDDHVHIAGQLTADPPAIEG 146 (315)
Q Consensus 71 sV~LIGrLg~DPElr~T~~Gk~VA~ftLAV~r~~~T~wI~Vv~wGkL-AE---~aakhLKKGD~V~VeGRL~srs~edk~ 146 (315)
.|.|.|+|-+ +|.. |+ ++.+.| ++ .+--++|++-.+. .+ ...+.|..||.|.|+|.+.... + +
T Consensus 88 ~V~v~GwV~~---~R~~--Gk-~~Fi~L--rD--~sg~iQvv~~~~~~~~~~~~~~~~l~~gd~V~V~G~v~~t~-~--g 154 (529)
T 4ex5_A 88 EVAIAGRMML---KRVM--GK-ASFATV--QD--GSGQIQFFVTPADVGAETYDAFKKWDLGDIVAARGVLFRTN-K--G 154 (529)
T ss_dssp EEEEEEEEEE---EEEE--TT-EEEEEE--EC--SSCEEEEEECHHHHCHHHHHHHHTCCTTCEEEEEEEEEECT-T--S
T ss_pred EEEEEEEEEe---eecC--CC-eEEEEE--Ee--CCeeEEEEEECCcCCHHHHHHHhcCCCCCEEEEEEEEEEcC-C--C
Confidence 5999999973 4543 55 343333 33 2347888876542 11 2345799999999999998642 1 2
Q ss_pred eEEEEEEEeEEeeecCC
Q 021274 147 QANVQVMVHSLNLIEPT 163 (315)
Q Consensus 147 rs~~eVvVe~I~FV~~k 163 (315)
.++|.|++|..+.+.
T Consensus 155 --elel~~~~i~vLs~a 169 (529)
T 4ex5_A 155 --ELSVKCTQLRLLAKA 169 (529)
T ss_dssp --CEEEEEEEEEEEECC
T ss_pred --cEEEEEEEEEEEecC
Confidence 488999999998764
No 67
>4hsp_A Hypothetical protein; PF11736 family protein, DUF3299, structural genomics, joint for structural genomics, JCSG; HET: MSE; 2.45A {Pseudomonas aeruginosa}
Probab=40.94 E-value=23 Score=30.39 Aligned_cols=84 Identities=10% Similarity=0.094 Sum_probs=57.9
Q ss_pred CCccE-EEEEEEeCCCceEEEcCCCcEEEEEEEEEcC--------CCCCeEEEEEEecchHHHHHhhcCCCCeEEEEEEe
Q 021274 67 KVANS-VNLIGHVDAPVQFQTSSDGKHWAGTVIVQHA--------ASHSLWIPILFEGDLAHIASSHLKKDDHVHIAGQL 137 (315)
Q Consensus 67 ~l~Ns-V~LIGrLg~DPElr~T~~Gk~VA~ftLAV~r--------~~~T~wI~Vv~wGkLAE~aakhLKKGD~V~VeGRL 137 (315)
.|-++ |.|-|.+. -+....+| .+..|.|.--- +-....|.|.+-..++ .-.--|.|.|+|+|
T Consensus 51 ~LdGk~VripGfvv---PLe~~~~~-~vteFlLVPy~GACiH~PPPPpNQiI~V~~~~g~~-----~~~l~~pvwV~G~L 121 (150)
T 4hsp_A 51 ALDGIEAKLPGYIV---PLEISEAG-LVTEFLLVPYYGACIHVPPPPSNQIVYVKTAKGVQ-----MDELYQPFWVEGTF 121 (150)
T ss_dssp GGTTEEEEEEEEEE---EEEECTTS-EEEEEEEESSTTBTTTBCCCCGGGCEEEEEEEEEE-----STTTTSCEEEEEEE
T ss_pred hhCCCEEEeccEEE---EeccCCCC-cEEEEEEeCCCCcCcCCCCCCCceEEEEECCCCcc-----chhccceEEEEEEE
Confidence 66665 89999986 34343334 36777665433 1346788887665543 11234899999999
Q ss_pred EecCCCcC-CeEEEEEEEeEEee
Q 021274 138 TADPPAIE-GQANVQVMVHSLNL 159 (315)
Q Consensus 138 ~srs~edk-~rs~~eVvVe~I~F 159 (315)
+....+.+ ..+.|.+.++.|+-
T Consensus 122 ~~~~~~~~l~~~~Y~m~a~~i~~ 144 (150)
T 4hsp_A 122 KVENASSELAAAGYRMQASKVTP 144 (150)
T ss_dssp ECCCEECSSCEESEEEEEEEEEE
T ss_pred EEeeecccceeEEeEEeeeEEEE
Confidence 99988777 78889999998864
No 68
>4fa8_A Secreted protein BARF1; immunoglobulin-like domains, 4-helix bundle fold, viral PROT cytokine complex; HET: NAG BMA; 2.20A {Human herpesvirus 4} PDB: 2ch8_A* 3uez_A* 4adf_A* 4adq_A*
Probab=35.98 E-value=32 Score=28.85 Aligned_cols=102 Identities=14% Similarity=0.143 Sum_probs=50.8
Q ss_pred eEEeeCCcccccCccc-cccccccCCceeeecCCCCCCCCCccCCCCCCccEEEEEEEeCCCceEEEcCCCcEEEEEEEE
Q 021274 21 RIILYSPAHFTRPFSS-RAHQFTKATTKTTTSKDVVWPKPSEIPFQVKVANSVNLIGHVDAPVQFQTSSDGKHWAGTVIV 99 (315)
Q Consensus 21 ~~~~~~~~~~~~~~st-~~~~~~~~~~~~~~~~~~~~prP~eI~wqp~l~NsV~LIGrLg~DPElr~T~~Gk~VA~ftLA 99 (315)
.+.+..|+.|...... ....-..-.+.|... .+|.| +|.|..+- -.+......+..+....+|.........
T Consensus 100 ~l~V~~p~~~~~~~~~~~v~~g~~~~l~C~~~---G~P~P-~v~W~~~~---~~~~~~~~~~~r~~~~~~g~l~il~i~~ 172 (203)
T 4fa8_A 100 HLSVVKPLTLSVHSERSQFPDFSVLTVTCTVN---AFPHP-HVQWLMPE---GVEPAPTAANGGVMKEKDGSLSVAVDLS 172 (203)
T ss_dssp EEEEEEEEEEEEEEEECCSSCSCCEEEEEEEE---EESCC-EEEECCC---------------CCEECTTSCEEEEEEEE
T ss_pred EEEecCCceeeecceeEEEcCCCEEEEEEEcC---CCCCC-EEEEEECC---eeecCcccccceEEEeCCCCEEEEEECC
Confidence 3444555555433222 222222235678753 36766 79995421 1122222334455667788755444444
Q ss_pred EcCCCCCeEEEEEEecchHHHHHhhcCCCCeEEEEEEeE
Q 021274 100 QHAASHSLWIPILFEGDLAHIASSHLKKDDHVHIAGQLT 138 (315)
Q Consensus 100 V~r~~~T~wI~Vv~wGkLAE~aakhLKKGD~V~VeGRL~ 138 (315)
+..+ +.-...|++-+...+. ..|||+|.|.
T Consensus 173 v~~~-D~G~YtC~A~N~~G~a--------~~v~vs~y~s 202 (203)
T 4fa8_A 173 LPKP-WHLPVTCVGKNDKEEA--------HGVYVSGYLS 202 (203)
T ss_dssp ECSS-CCCCEEEEEESSSCEE--------EEEEEECCC-
T ss_pred CCHH-HCEEEEEEEEcCCCEE--------EEEEEEEEEC
Confidence 5443 3445799999887752 2578887664
No 69
>1ltl_A DNA replication initiator (CDC21/CDC54); HET: DNA; 3.00A {Methanothermobacterthermautotrophicus} SCOP: b.40.4.11
Probab=31.55 E-value=76 Score=28.73 Aligned_cols=51 Identities=20% Similarity=0.253 Sum_probs=37.2
Q ss_pred CeEEEEEEecchHHHHHhhcCCCCeEEEEEEeEecCCCcC-CeEEEEEEEeEEeeec
Q 021274 106 SLWIPILFEGDLAHIASSHLKKDDHVHIAGQLTADPPAIE-GQANVQVMVHSLNLIE 161 (315)
Q Consensus 106 T~wI~Vv~wGkLAE~aakhLKKGD~V~VeGRL~srs~edk-~rs~~eVvVe~I~FV~ 161 (315)
.--+.|.+-++|.+ .++.||+|.|.|-+.... .+. ....+-|.|.+|.-..
T Consensus 197 Prsi~V~l~~dLvd----~~~PGDrV~vtGI~~~~~-~~~~~~~~~~l~a~~I~~~~ 248 (279)
T 1ltl_A 197 PRQITVVLEDDLVD----TLTPGDIVRVTGTLRTVR-DERTKRFKNFIYGNYTEFLE 248 (279)
T ss_dssp CCEEEEEEEGGGTT----CCCTTCEEEEEEEEEEEE-ETTTTEEEEEEEEEECCBC-
T ss_pred CeEEEEEEcccccC----ccCCCCEEEEEEEEEEee-CCCCceEEEEEEEEEEEEec
Confidence 46899999999975 578999999999988763 222 4455666777766543
No 70
>1xjv_A Protection of telomeres 1; protein-DNA complex, single-stranded DNA, transcription/DNA complex; 1.73A {Homo sapiens} SCOP: b.40.4.3 b.40.4.3 PDB: 3kjo_A 3kjp_A
Probab=31.36 E-value=55 Score=29.85 Aligned_cols=72 Identities=18% Similarity=0.051 Sum_probs=46.7
Q ss_pred cEEEEEEEeCCCceEEEcCCCcEEEEEEEEEcCCCCCeEEEEEEecchHHHHHhhcCCCCeEEEEEEeEecCCCcC
Q 021274 70 NSVNLIGHVDAPVQFQTSSDGKHWAGTVIVQHAASHSLWIPILFEGDLAHIASSHLKKDDHVHIAGQLTADPPAIE 145 (315)
Q Consensus 70 NsV~LIGrLg~DPElr~T~~Gk~VA~ftLAV~r~~~T~wI~Vv~wGkLAE~aakhLKKGD~V~VeGRL~srs~edk 145 (315)
..|.+||-|..=-..+.+.+...++.++|.-.. .. -+.|.+|.+..+.+-.-.+.||-|.+- +++.+.|.++
T Consensus 16 ~~vnvigVV~~~~~p~~s~G~d~~~tl~I~D~S--~~-gl~v~iF~~~~~~LP~v~~~GDII~l~-~vki~~~~g~ 87 (294)
T 1xjv_A 16 TIVNVYGVVKFFKPPYLSKGTDYCSVVTIVDQT--NV-KLTCLLFSGNYEALPIIYKNGDIVRFH-RLKIQVYKKE 87 (294)
T ss_dssp EEEEEEEEEEEEEEEEECSSSSEEEEEEEECTT--CC-EEEEEEEESSGGGSCCCCSTTCEEEEE-EEEEEEETTE
T ss_pred CeeEEEEEEEEcCCCccCCCCeEEEEEEEEcCC--CC-CEEEEEECCChHHCCCCCCCCCEEEEE-EEEEEEECCe
Confidence 458999998633333445444677777666543 12 399999988666555545999988775 4455566554
No 71
>4eh1_A Flavohemoprotein; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: FAD; 2.20A {Vibrio cholerae o1 biovar el tor}
Probab=27.09 E-value=1.2e+02 Score=25.49 Aligned_cols=28 Identities=18% Similarity=0.125 Sum_probs=22.2
Q ss_pred cchHHHHHhhcCCCCeEEEEEEeEecCC
Q 021274 115 GDLAHIASSHLKKDDHVHIAGQLTADPP 142 (315)
Q Consensus 115 GkLAE~aakhLKKGD~V~VeGRL~srs~ 142 (315)
|.....+.++++.||.|.|.|-...-.+
T Consensus 83 G~~S~~l~~~l~~G~~v~v~gP~G~~~~ 110 (243)
T 4eh1_A 83 GLVSHYLHNNVKVGDSVKLYAPAGDFFY 110 (243)
T ss_dssp CHHHHHHHHHCCTTCEEEEEEEECSCCC
T ss_pred CeehhHHHhcCCCCCEEEEEccCcccCc
Confidence 7777777788999999999997654433
No 72
>4gop_C Putative uncharacterized protein; OB fold, ssDNA binding, DNA binding protein-DNA complex; HET: DNA; 3.10A {Ustilago maydis}
Probab=24.28 E-value=1.8e+02 Score=27.77 Aligned_cols=71 Identities=10% Similarity=0.075 Sum_probs=41.1
Q ss_pred EEEEEEEeCCCceEEE--cC-CCcEEEEEEEEEcCCCCC-eEEEEEEecchHHHHHh--hcCCCCeEEEEEEeEecCCCc
Q 021274 71 SVNLIGHVDAPVQFQT--SS-DGKHWAGTVIVQHAASHS-LWIPILFEGDLAHIASS--HLKKDDHVHIAGQLTADPPAI 144 (315)
Q Consensus 71 sV~LIGrLg~DPElr~--T~-~Gk~VA~ftLAV~r~~~T-~wI~Vv~wGkLAE~aak--hLKKGD~V~VeGRL~srs~ed 144 (315)
.|.+||.|..==+++. +. +|+....-.|...+ .+ .-++|++||+.|+.... ....|+-|.|.|-.. ..|.+
T Consensus 135 ~vDViG~V~~v~~~~~i~~k~~g~~~~kr~i~L~D--~sg~~i~~tLWg~~A~~f~~~~~~~~~~VV~i~~~kV-~~f~G 211 (444)
T 4gop_C 135 QCDVIGILDSYGELSEIVSKASQRPVQKRELTLVD--QGNRSVKLTLWGKTAETFPTNAGVDEKPVLAFKGVKV-GDFGG 211 (444)
T ss_dssp CCBEEEEEEEECCCEEECCTTTCSCEEEEEEEEEC--TTCBEEEEEEEHHHHHTSTTSTTSSSCCEEEEESCEE-ECTTS
T ss_pred ceEEEEEEEEcCCcEEEEEccCCceeeEEEEEEEe--CCCCEEEEEEEhhhhhhhhhhhccCCCCEEEEEeEEE-eecCC
Confidence 3667777654222222 22 56533333333333 33 47999999999987552 267888888877432 34644
No 73
>3mal_A Stromal cell-derived factor 2-like protein; trefoil fold, MIR motifs, unfolded protein response, putativ binding protein, plant protein; 1.95A {Arabidopsis thaliana} SCOP: b.42.6.0
Probab=22.16 E-value=16 Score=32.18 Aligned_cols=27 Identities=11% Similarity=-0.070 Sum_probs=23.9
Q ss_pred CCCCCCCCcceecCC--CChhHHhhcccc
Q 021274 228 DFKRKDGTLPLWLNS--APDWVLSELEGV 254 (315)
Q Consensus 228 DFKhkd~~~aLWl~~--~P~wv~~~L~~l 254 (315)
-|+|.+||-.||-.+ .|.|..+|.|-.
T Consensus 145 RL~H~~T~~yL~sh~~~lp~wg~~Q~EV~ 173 (199)
T 3mal_A 145 RLQHIDTSGYLHSHDKKYQRIAGGQQEVC 173 (199)
T ss_dssp EEEETTTCCEEEEEEEECCSSSTTCEEEE
T ss_pred EEEECCCCeEEeeCCCCCCCCCCcceEEE
Confidence 589999999999985 999999998873
No 74
>1t9f_A Protein 1D10; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics, secsg; 2.00A {Caenorhabditis elegans} SCOP: b.42.6.1
Probab=21.47 E-value=18 Score=31.34 Aligned_cols=28 Identities=14% Similarity=-0.076 Sum_probs=24.1
Q ss_pred CCCCCCCCcceecCC--CChhHHhhccccc
Q 021274 228 DFKRKDGTLPLWLNS--APDWVLSELEGVV 255 (315)
Q Consensus 228 DFKhkd~~~aLWl~~--~P~wv~~~L~~l~ 255 (315)
-|+|.+||-.||..+ .|.|...|.|-.-
T Consensus 133 RL~H~~tg~yL~~~~~~lp~w~~~Q~EV~~ 162 (187)
T 1t9f_A 133 KLRHAVTGSYLSLSGQQFGRPIHGQREVVG 162 (187)
T ss_dssp EEEETTTCCEEEEEEEECCTTSTTCEEEEE
T ss_pred EEEECCcCeEEecCCcccCCCCCCceEEEE
Confidence 378999999999986 8999999988743
No 75
>4ah6_A Aspartate--tRNA ligase, mitochondrial; 3.70A {Homo sapiens}
Probab=20.66 E-value=1.9e+02 Score=29.70 Aligned_cols=81 Identities=14% Similarity=0.274 Sum_probs=53.5
Q ss_pred EEEEEEEeCCCceEEEcCCCcEEEEEEEEEcCCCCCeEEEEEEecchH----HHHHhhcCCCCeEEEEEEeEecCCCcC-
Q 021274 71 SVNLIGHVDAPVQFQTSSDGKHWAGTVIVQHAASHSLWIPILFEGDLA----HIASSHLKKDDHVHIAGQLTADPPAIE- 145 (315)
Q Consensus 71 sV~LIGrLg~DPElr~T~~Gk~VA~ftLAV~r~~~T~wI~Vv~wGkLA----E~aakhLKKGD~V~VeGRL~srs~edk- 145 (315)
.|.|.|+|.+- | ++. | |..++ .+-.++|++-.+.. ...++.|..||.|.|+|.+..+.-...
T Consensus 26 ~V~l~GwV~~~---R---~~~----F-i~LrD--~~g~iQvv~~~~~~~~~~~~~~~~l~~e~~V~V~G~v~~~~~~~~n 92 (617)
T 4ah6_A 26 EVTLCGWIQYR---R---QNT----F-LVLRD--FDGLVQVIIPQDESAASVKKILCEAPVESVVQVSGTVISRPAGQEN 92 (617)
T ss_dssp EEEEEEEECCC---C---TTT----E-EEEEC--SSCEEEEECCCSSSSHHHHHHHHHCCSSCEEEEEEEEEECSTTCCC
T ss_pred EEEEEEEeeee---c---CeE----E-EEEEe--CCcCEEEEEeCCcCcHHHHHHHhcCCCCCEEEEEEEEEeCCccccC
Confidence 69999999853 2 122 2 33333 24478888765432 234567999999999999988642111
Q ss_pred ---CeEEEEEEEeEEeeecCCc
Q 021274 146 ---GQANVQVMVHSLNLIEPTS 164 (315)
Q Consensus 146 ---~rs~~eVvVe~I~FV~~k~ 164 (315)
..-.++|.|++|..+....
T Consensus 93 ~~~~tgeiEl~~~~i~vL~~a~ 114 (617)
T 4ah6_A 93 PKMPTGEIEIKVKTAELLNACK 114 (617)
T ss_dssp TTSTTTTEEEEEEEEEEEECBC
T ss_pred ccCCCCcEEEEEeEEEEeecCC
Confidence 1224899999999987654
No 76
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=20.50 E-value=62 Score=33.90 Aligned_cols=61 Identities=13% Similarity=0.165 Sum_probs=41.7
Q ss_pred EEEEEEEeCCCceEEEcCCCcEEEEEEEEEcCCCCCeEEEEEEecchHHHHHhhcCC--CCeEEEEEEeEe
Q 021274 71 SVNLIGHVDAPVQFQTSSDGKHWAGTVIVQHAASHSLWIPILFEGDLAHIASSHLKK--DDHVHIAGQLTA 139 (315)
Q Consensus 71 sV~LIGrLg~DPElr~T~~Gk~VA~ftLAV~r~~~T~wI~Vv~wGkLAE~aakhLKK--GD~V~VeGRL~s 139 (315)
.|++.|.|..-..... .++.. +.+.+.+ .+..+.+++|+.- .+.+.++. |+.+.|.|++..
T Consensus 167 ~~~~~~~v~~~~~~~~--~~~~~--~~~~~~d--~~~~~~~~~f~~~--~~~~~~~~~~g~~~~~~G~~~~ 229 (780)
T 1gm5_A 167 KVTTQGKIVSVETKKF--QNMNI--LTAVLSD--GLVHVPLKWFNQD--YLQTYLKQLTGKEVFVTGTVKS 229 (780)
T ss_dssp CCEEEECCCCCEEEEC--SSCEE--EEEEECC--SSCCEEEEECSCC--TTHHHHHTTCSSCEEEEEEECS
T ss_pred EEEEEEEEEEEEeecC--CCCeE--EEEEEEE--CCceEEEEEECcH--HHHhhCccCCCCEEEEEEEEEE
Confidence 7899999998654433 23332 3333333 3446889999842 34567889 999999999976
No 77
>1qzg_A Protection of telomeres protein 1; protrein-DNA complex, single-stranded telomeric DNA, DNA binding protein/DNA complex; HET: TMP; 1.90A {Schizosaccharomyces pombe} SCOP: b.40.4.3 PDB: 1qzh_A
Probab=20.18 E-value=1.1e+02 Score=26.98 Aligned_cols=74 Identities=14% Similarity=0.047 Sum_probs=47.8
Q ss_pred EEEEEEEeCCCceEEEcCCC--cEEEEEEEEEcC-CCCCeEEEEEEecchHHHHHhhcCCCCeEEEEEEeEecCCCcC
Q 021274 71 SVNLIGHVDAPVQFQTSSDG--KHWAGTVIVQHA-ASHSLWIPILFEGDLAHIASSHLKKDDHVHIAGQLTADPPAIE 145 (315)
Q Consensus 71 sV~LIGrLg~DPElr~T~~G--k~VA~ftLAV~r-~~~T~wI~Vv~wGkLAE~aakhLKKGD~V~VeGRL~srs~edk 145 (315)
.|.+||-|.-=-..+.+..| .+++.++|.-.. .....=+.|.+|.+..+.+=.=.+-||-|.+-. +....|.++
T Consensus 44 ~VNviGVVvd~~~P~~S~rGtkD~~~TltI~D~S~~~~~~gL~v~iF~~~~e~LP~V~~~GDIIlL~r-vkiq~~~g~ 120 (187)
T 1qzg_A 44 IVNLFGIVKDFTPSRQSLHGTKDWVTTVYLWDPTCDTSSIGLQIHLFSKQGNDLPVIKQVGQPLLLHQ-ITLRSYRDR 120 (187)
T ss_dssp EEEEEEEEEEEEEEEECSSTTCCEEEEEEEECTTSCTTSCCEEEEEEESSSSCSCCCCSTTCEEEEEE-EEEEEETTE
T ss_pred EEEEEEEEEEccCceecCCCCccEEEEEEEEeCCCCCCCCceEEEEECCChhhCCCCCCCCCEEEEEE-EEEEEECCe
Confidence 58999988532223334234 588888887755 233345999999887765544348899998864 455566544
Done!