BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 021275
(315 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1NLT|A Chain A, The Crystal Structure Of Hsp40 Ydj1
Length = 248
Score = 166 bits (420), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 81/194 (41%), Positives = 117/194 (60%), Gaps = 1/194 (0%)
Query: 104 EDVIHPLKVSLEDLYNGTSKKLSLSRNVIXXXXXXXXXXXXXXXXXXXXQGSGMKVSIRH 163
+D+ H + SLE+LY G + KL+L++ ++ G G+K R
Sbjct: 12 KDIKHEISASLEELYKGRTAKLALNKQILCKECEGRGGKKGAVKKCTSCNGQGIKFVTRQ 71
Query: 164 LGPSMIQQMQHPCNECKGTGETINDKDRCPQCKGEKVIQEKKVLEVIVEKGMQNGQKITF 223
+GP MIQ+ Q C+ C GTG+ I+ KDRC C G+KV E+K+LEV VE GM++GQ+I F
Sbjct: 72 MGP-MIQRFQTECDVCHGTGDIIDPKDRCKSCNGKKVENERKILEVHVEPGMKDGQRIVF 130
Query: 224 PGEADEAPDTVTGDIVFVLQQKEHPKFKRKGDDLFVEHTLSLTEALCGFQFVITHLDGRQ 283
GEAD+APD + GD+VF++ ++ H FKR GDDL E + L A+ G +F + H+ G
Sbjct: 131 KGEADQAPDVIPGDVVFIVSERPHKSFKRDGDDLVYEAEIDLLTAIAGGEFALEHVSGDW 190
Query: 284 LLIKSQPGEVVKPG 297
L + PGEV+ PG
Sbjct: 191 LKVGIVPGEVIAPG 204
>pdb|3AGZ|A Chain A, Crystal Structure Of Human Hsp40 Hdj1 Peptide-Binding
Domain Complexed With A C-Terminal Peptide Of Hsp70
pdb|3AGZ|B Chain B, Crystal Structure Of Human Hsp40 Hdj1 Peptide-Binding
Domain Complexed With A C-Terminal Peptide Of Hsp70
Length = 190
Score = 82.8 bits (203), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 58/192 (30%), Positives = 84/192 (43%), Gaps = 63/192 (32%)
Query: 106 VIHPLKVSLEDLYNGTSKKLSLSRNVIXXXXXXXXXXXXXXXXXXXXQGSGMKVSIRHLG 165
V H L+VSLE++Y+G +KK MK+S + L
Sbjct: 14 VTHDLRVSLEEIYSGCTKK--------------------------------MKISHKRLN 41
Query: 166 PSMIQQMQHPCNECKGTGETINDKDRCPQCKGEKVIQEKKVLEVIVEKGMQNGQKITFPG 225
P G+ + E K+L + V+KG + G KITFP
Sbjct: 42 PD-----------------------------GKSIRNEDKILTIEVKKGWKEGTKITFPK 72
Query: 226 EADEAPDTVTGDIVFVLQQKEHPKFKRKGDDLFVEHTLSLTEALCGFQFVITHLDGRQLL 285
E D+ + + DIVFVL+ K H FKR G D+ +SL EALCG + LDGR +
Sbjct: 73 EGDQTSNNIPADIVFVLKDKPHNIFKRDGSDVIYPARISLREALCGCTVNVPTLDGRTIP 132
Query: 286 IKSQPGEVVKPG 297
+ + +V++PG
Sbjct: 133 VVFK--DVIRPG 142
>pdb|3AGX|A Chain A, Crystal Structure Of Human Hsp40 Hdj1 Peptide-Binding
Domain
pdb|3AGX|B Chain B, Crystal Structure Of Human Hsp40 Hdj1 Peptide-Binding
Domain
pdb|3AGY|A Chain A, Crystal Structure Of Human Hsp40 Hdj1 Peptide-Binding
Domain Complexed With A C-Terminal Peptide Of Hsp70
pdb|3AGY|B Chain B, Crystal Structure Of Human Hsp40 Hdj1 Peptide-Binding
Domain Complexed With A C-Terminal Peptide Of Hsp70
Length = 181
Score = 82.4 bits (202), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 58/192 (30%), Positives = 84/192 (43%), Gaps = 63/192 (32%)
Query: 106 VIHPLKVSLEDLYNGTSKKLSLSRNVIXXXXXXXXXXXXXXXXXXXXQGSGMKVSIRHLG 165
V H L+VSLE++Y+G +KK MK+S + L
Sbjct: 5 VTHDLRVSLEEIYSGCTKK--------------------------------MKISHKRLN 32
Query: 166 PSMIQQMQHPCNECKGTGETINDKDRCPQCKGEKVIQEKKVLEVIVEKGMQNGQKITFPG 225
P G+ + E K+L + V+KG + G KITFP
Sbjct: 33 PD-----------------------------GKSIRNEDKILTIEVKKGWKEGTKITFPK 63
Query: 226 EADEAPDTVTGDIVFVLQQKEHPKFKRKGDDLFVEHTLSLTEALCGFQFVITHLDGRQLL 285
E D+ + + DIVFVL+ K H FKR G D+ +SL EALCG + LDGR +
Sbjct: 64 EGDQTSNNIPADIVFVLKDKPHNIFKRDGSDVIYPARISLREALCGCTVNVPTLDGRTIP 123
Query: 286 IKSQPGEVVKPG 297
+ + +V++PG
Sbjct: 124 VVFK--DVIRPG 133
>pdb|2QLD|A Chain A, Human Hsp40 Hdj1
Length = 183
Score = 82.4 bits (202), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 58/192 (30%), Positives = 84/192 (43%), Gaps = 63/192 (32%)
Query: 106 VIHPLKVSLEDLYNGTSKKLSLSRNVIXXXXXXXXXXXXXXXXXXXXQGSGMKVSIRHLG 165
V H L+VSLE++Y+G +KK MK+S + L
Sbjct: 7 VTHDLRVSLEEIYSGCTKK--------------------------------MKISHKRLN 34
Query: 166 PSMIQQMQHPCNECKGTGETINDKDRCPQCKGEKVIQEKKVLEVIVEKGMQNGQKITFPG 225
P G+ + E K+L + V+KG + G KITFP
Sbjct: 35 PD-----------------------------GKSIRNEDKILTIEVKKGWKEGTKITFPK 65
Query: 226 EADEAPDTVTGDIVFVLQQKEHPKFKRKGDDLFVEHTLSLTEALCGFQFVITHLDGRQLL 285
E D+ + + DIVFVL+ K H FKR G D+ +SL EALCG + LDGR +
Sbjct: 66 EGDQTSNNIPADIVFVLKDKPHNIFKRDGSDVIYPARISLREALCGCTVNVPTLDGRTIP 125
Query: 286 IKSQPGEVVKPG 297
+ + +V++PG
Sbjct: 126 VVFK--DVIRPG 135
>pdb|2O37|A Chain A, J-Domain Of Sis1 Protein, Hsp40 Co-Chaperone From
Saccharomyces Cerevisiae
Length = 92
Score = 77.0 bits (188), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 36/58 (62%), Positives = 50/58 (86%), Gaps = 1/58 (1%)
Query: 9 NASQDDLKKAYRKAAIKNHPDK-GGDPEKFKELAQAYEVLSDPEKREIYDQYGEDALK 65
+A++ +LKK YRKAA+K HPDK GD EKFKE+++A+E+L+DP+KREIYDQYG +A +
Sbjct: 19 SANEQELKKGYRKAALKYHPDKPTGDTEKFKEISEAFEILNDPQKREIYDQYGLEAAR 76
>pdb|1HDJ|A Chain A, Human Hsp40 (Hdj-1), Nmr
Length = 77
Score = 75.5 bits (184), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 35/61 (57%), Positives = 50/61 (81%), Gaps = 3/61 (4%)
Query: 8 KNASQDDLKKAYRKAAIKNHPDKGGDP---EKFKELAQAYEVLSDPEKREIYDQYGEDAL 64
+ AS +++K+AYR+ A++ HPDK +P EKFKE+A+AY+VLSDP KREI+D+YGE+ L
Sbjct: 13 RGASDEEIKRAYRRQALRYHPDKNKEPGAEEKFKEIAEAYDVLSDPRKREIFDRYGEEGL 72
Query: 65 K 65
K
Sbjct: 73 K 73
>pdb|2Q2G|A Chain A, Crystal Structure Of Dimerization Domain Of Hsp40 From
Cryptosporidium Parvum, Cgd2_1800
pdb|2Q2G|B Chain B, Crystal Structure Of Dimerization Domain Of Hsp40 From
Cryptosporidium Parvum, Cgd2_1800
Length = 180
Score = 72.4 bits (176), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 40/99 (40%), Positives = 59/99 (59%), Gaps = 3/99 (3%)
Query: 199 KVIQEKKVLEVIVEKGMQNGQKITFPGEAD-EAPDTVTGDIVFVLQQKEHPKFKRKGDDL 257
KV E+ ++EV ++ G ++G K+T+ GE D E+P T GD+V ++Q K HP+F R L
Sbjct: 36 KVRNEENIVEVEIKPGWKDGTKLTYSGEGDQESPGTSPGDLVLIIQTKTHPRFTRDDCHL 95
Query: 258 FVEHTLSLTEALCGFQFVITHLDGRQLLIKSQPGEVVKP 296
+ T+ L AL GF +T LD R L I + E+V P
Sbjct: 96 IXKVTIPLVRALTGFTCPVTTLDNRNLQIPIK--EIVNP 132
>pdb|2LGW|A Chain A, Solution Structure Of The J Domain Of Hsj1a
Length = 99
Score = 70.9 bits (172), Expect = 1e-12, Method: Composition-based stats.
Identities = 36/62 (58%), Positives = 47/62 (75%), Gaps = 5/62 (8%)
Query: 8 KNASQDDLKKAYRKAAIKNHPDKGGD-----PEKFKELAQAYEVLSDPEKREIYDQYGED 62
++AS DD+KKAYR+ A++ HPDK D +KFKE+A+AYEVLSD KREIYD+YG +
Sbjct: 12 RSASADDIKKAYRRKALQWHPDKNPDNKEFAEKKFKEVAEAYEVLSDKHKREIYDRYGRE 71
Query: 63 AL 64
L
Sbjct: 72 GL 73
>pdb|2LO1|A Chain A, Nmr Structure Of The Protein Bc008182, A Dnaj-Like
Domain From Homo Sapiens
Length = 71
Score = 70.5 bits (171), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 35/54 (64%), Positives = 46/54 (85%), Gaps = 1/54 (1%)
Query: 9 NASQDDLKKAYRKAAIKNHPDKG-GDPEKFKELAQAYEVLSDPEKREIYDQYGE 61
NA+Q++LKKAYRK A+K HPDK + EKFK+++QAYEVLSD +KRE+YD+ GE
Sbjct: 17 NATQEELKKAYRKLALKYHPDKNPNEGEKFKQISQAYEVLSDAKKRELYDKGGE 70
>pdb|2OCH|A Chain A, J-domain Of Dnj-12 From Caenorhabditis Elegans
Length = 73
Score = 67.8 bits (164), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 35/55 (63%), Positives = 46/55 (83%), Gaps = 1/55 (1%)
Query: 9 NASQDDLKKAYRKAAIKNHPDKGGD-PEKFKELAQAYEVLSDPEKREIYDQYGED 62
+AS ++LKKAYRK A+K HPDK D E+FK+++QAYEVLSD +KR+IYDQ GE+
Sbjct: 19 DASDNELKKAYRKMALKFHPDKNPDGAEQFKQISQAYEVLSDEKKRQIYDQGGEE 73
>pdb|1C3G|A Chain A, S. Cerevisiae Heat Shock Protein 40 Sis1
Length = 170
Score = 66.6 bits (161), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 39/97 (40%), Positives = 53/97 (54%), Gaps = 2/97 (2%)
Query: 196 KGEKVIQEKKVLEVIVEKGMQNGQKITFPGEADEAPDTVTGDIV-FVLQQKEHPKFKRKG 254
KG EK +++ ++ G + G KIT+ + D P T + FV+Q+K HP FKR G
Sbjct: 27 KGPHGASEKTQIDIQLKPGWKAGTKITYKNQGDYNPQTGRRKTLQFVIQEKSHPNFKRDG 86
Query: 255 DDLFVEHTLSLTEALCGFQFVITHLDGRQL-LIKSQP 290
DDL LS E+L GF I +DGR L L + QP
Sbjct: 87 DDLIYTLPLSFKESLLGFSKTIQTIDGRTLPLSRVQP 123
>pdb|2B26|A Chain A, The Crystal Structure Of The Protein Complex Of Yeast
Hsp40 Sis1 And Hsp70 Ssa1
pdb|2B26|B Chain B, The Crystal Structure Of The Protein Complex Of Yeast
Hsp40 Sis1 And Hsp70 Ssa1
pdb|2B26|C Chain C, The Crystal Structure Of The Protein Complex Of Yeast
Hsp40 Sis1 And Hsp70 Ssa1
Length = 173
Score = 66.6 bits (161), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 39/97 (40%), Positives = 53/97 (54%), Gaps = 2/97 (2%)
Query: 196 KGEKVIQEKKVLEVIVEKGMQNGQKITFPGEADEAPDTVTGDIV-FVLQQKEHPKFKRKG 254
KG EK +++ ++ G + G KIT+ + D P T + FV+Q+K HP FKR G
Sbjct: 27 KGPHGASEKTQIDIQLKPGWKAGTKITYKNQGDYNPQTGRRKTLQFVIQEKSHPNFKRDG 86
Query: 255 DDLFVEHTLSLTEALCGFQFVITHLDGRQL-LIKSQP 290
DDL LS E+L GF I +DGR L L + QP
Sbjct: 87 DDLIYTLPLSFKESLLGFSKTIQTIDGRTLPLSRVQP 123
>pdb|2CTW|A Chain A, Solution Structure Of J-Domain From Mouse Dnaj Subfamily
C Menber 5
Length = 109
Score = 65.1 bits (157), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 34/61 (55%), Positives = 43/61 (70%), Gaps = 4/61 (6%)
Query: 8 KNASQDDLKKAYRKAAIKNHPDKGGD-PE---KFKELAQAYEVLSDPEKREIYDQYGEDA 63
KNA+ DD+KK+YRK A+K HPDK D PE KFKE+ A+ +L+D KR IYD+YG
Sbjct: 27 KNATSDDIKKSYRKLALKYHPDKNPDNPEAADKFKEINNAHAILTDATKRNIYDKYGSLG 86
Query: 64 L 64
L
Sbjct: 87 L 87
>pdb|2CTP|A Chain A, Solution Structure Of J-Domain From Human Dnaj Subfamily
B Menber 12
Length = 78
Score = 64.7 bits (156), Expect = 6e-11, Method: Composition-based stats.
Identities = 32/56 (57%), Positives = 40/56 (71%), Gaps = 3/56 (5%)
Query: 8 KNASQDDLKKAYRKAAIKNHPDKGGDP---EKFKELAQAYEVLSDPEKREIYDQYG 60
+ AS +DLKKAYR+ A+K HPDK P E FK + AY VLS+PEKR+ YDQ+G
Sbjct: 17 RGASDEDLKKAYRRLALKFHPDKNHAPGATEAFKAIGTAYAVLSNPEKRKQYDQFG 72
>pdb|2EJ7|A Chain A, Solution Structure Of The Dnaj Domain Of The Human
Protein Hcg3, A Hypothetical Protein Tmp_locus_21
Length = 82
Score = 62.8 bits (151), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 33/60 (55%), Positives = 45/60 (75%), Gaps = 9/60 (15%)
Query: 8 KNASQDDLKKAYRKAAIKNHPDKGGDPE-------KFKELAQAYEVLSDPEKREIYDQYG 60
+ AS + +KKAYRK A+K HPDK +PE +FK++A+AYEVLSD +KR+IYD+YG
Sbjct: 19 RQASSEAIKKAYRKLALKWHPDK--NPENKEEAERRFKQVAEAYEVLSDAKKRDIYDRYG 76
>pdb|1XBL|A Chain A, Nmr Structure Of The J-Domain (Residues 2-76) In The
Escherichia Coli N-Terminal Fragment (Residues 2-108)
Of The Molecular Chaperone Dnaj, 20 Structures
Length = 107
Score = 60.8 bits (146), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 31/63 (49%), Positives = 45/63 (71%), Gaps = 4/63 (6%)
Query: 8 KNASQDDLKKAYRKAAIKNHPDKG-GDPE---KFKELAQAYEVLSDPEKREIYDQYGEDA 63
K A + +++KAY++ A+K HPD+ GD E KFKE+ +AYEVL+D +KR YDQYG A
Sbjct: 13 KTAEEREIRKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYEVLTDSQKRAAYDQYGHAA 72
Query: 64 LKE 66
++
Sbjct: 73 FEQ 75
>pdb|1BQZ|A Chain A, J-Domain (Residues 1-77) Of The Escherichia Coli
N-Terminal Fragment (Residues 1-78) Of The Molecular
Chaperone Dnaj, Nmr, 20 Structures
Length = 77
Score = 60.8 bits (146), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 31/63 (49%), Positives = 45/63 (71%), Gaps = 4/63 (6%)
Query: 8 KNASQDDLKKAYRKAAIKNHPDKG-GDPE---KFKELAQAYEVLSDPEKREIYDQYGEDA 63
K A + +++KAY++ A+K HPD+ GD E KFKE+ +AYEVL+D +KR YDQYG A
Sbjct: 13 KTAEEREIRKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYEVLTDSQKRAAYDQYGHAA 72
Query: 64 LKE 66
++
Sbjct: 73 FEQ 75
>pdb|1BQ0|A Chain A, J-Domain (Residues 1-77) Of The Escherichia Coli
N-Terminal Fragment (Residues 1-104) Of The Molecular
Chaperone Dnaj, Nmr, 20 Structures
Length = 103
Score = 60.8 bits (146), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 31/63 (49%), Positives = 45/63 (71%), Gaps = 4/63 (6%)
Query: 8 KNASQDDLKKAYRKAAIKNHPDKG-GDPE---KFKELAQAYEVLSDPEKREIYDQYGEDA 63
K A + +++KAY++ A+K HPD+ GD E KFKE+ +AYEVL+D +KR YDQYG A
Sbjct: 13 KTAEEREIRKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYEVLTDSQKRAAYDQYGHAA 72
Query: 64 LKE 66
++
Sbjct: 73 FEQ 75
>pdb|2CUG|A Chain A, Solution Structure Of The J Domain Of The Pseudo Dnaj
Protein, Mouse Hypothetical Mkiaa0962
Length = 88
Score = 59.7 bits (143), Expect = 2e-09, Method: Composition-based stats.
Identities = 29/56 (51%), Positives = 41/56 (73%), Gaps = 3/56 (5%)
Query: 8 KNASQDDLKKAYRKAAIKNHPDKGGDP---EKFKELAQAYEVLSDPEKREIYDQYG 60
+ ASQ D+KKAY+K A + HPDK DP ++F ++++AYE+LS+ EKR YD YG
Sbjct: 27 RTASQADIKKAYKKLAREWHPDKNKDPGAEDRFIQISKAYEILSNEEKRTNYDHYG 82
>pdb|2DMX|A Chain A, Solution Structure Of The J Domain Of Dnaj Homolog
Subfamily B Member 8
Length = 92
Score = 59.7 bits (143), Expect = 2e-09, Method: Composition-based stats.
Identities = 31/64 (48%), Positives = 46/64 (71%), Gaps = 5/64 (7%)
Query: 7 RKNASQDDLKKAYRKAAIKNHPDKGGD-----PEKFKELAQAYEVLSDPEKREIYDQYGE 61
+ +AS +D+KKAYRK A++ HPDK D +KFK +++AYEVLSD +KR +YD+ G
Sbjct: 18 QASASPEDIKKAYRKLALRWHPDKNPDNKEEAEKKFKLVSEAYEVLSDSKKRSLYDRAGC 77
Query: 62 DALK 65
D+ +
Sbjct: 78 DSWR 81
>pdb|2CTR|A Chain A, Solution Structure Of J-Domain From Human Dnaj Subfamily
B Menber 9
Length = 88
Score = 57.0 bits (136), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 29/60 (48%), Positives = 40/60 (66%), Gaps = 3/60 (5%)
Query: 8 KNASQDDLKKAYRKAAIKNHPDKGGDPE---KFKELAQAYEVLSDPEKREIYDQYGEDAL 64
K+AS+ +KKA+ K A+K HPDK P+ KF+E+A+AYE LSD +R+ YD G A
Sbjct: 17 KSASERQIKKAFHKLAMKYHPDKNKSPDAEAKFREIAEAYETLSDANRRKEYDTLGHSAF 76
>pdb|2DN9|A Chain A, Solution Structure Of J-Domain From The Dnaj Homolog,
Human Tid1 Protein
Length = 79
Score = 56.6 bits (135), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 32/57 (56%), Positives = 39/57 (68%), Gaps = 4/57 (7%)
Query: 8 KNASQDDLKKAYRKAAIKNHPDKGGD----PEKFKELAQAYEVLSDPEKREIYDQYG 60
+NASQ ++KKAY + A K HPD D EKF +LA+AYEVLSD KR+ YD YG
Sbjct: 17 RNASQKEIKKAYYQLAKKYHPDTNKDDPKAKEKFSQLAEAYEVLSDEVKRKQYDAYG 73
>pdb|3APO|A Chain A, Crystal Structure Of Full-Length Erdj5
Length = 780
Score = 48.9 bits (115), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 26/63 (41%), Positives = 42/63 (66%), Gaps = 4/63 (6%)
Query: 8 KNASQDDLKKAYRKAAIKNHPDKG-GDPEK---FKELAQAYEVLSDPEKREIYDQYGEDA 63
K AS ++++A++K A+K HPDK +P F ++ +AYEVL D + R+ YD+YGE
Sbjct: 31 KTASSREIRQAFKKLALKLHPDKNPNNPNAHGDFLKINRAYEVLKDEDLRKKYDKYGEKG 90
Query: 64 LKE 66
L++
Sbjct: 91 LED 93
>pdb|3APQ|A Chain A, Crystal Structure Of J-Trx1 Fragment Of Erdj5
pdb|3APQ|B Chain B, Crystal Structure Of J-Trx1 Fragment Of Erdj5
Length = 210
Score = 48.1 bits (113), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 26/63 (41%), Positives = 42/63 (66%), Gaps = 4/63 (6%)
Query: 8 KNASQDDLKKAYRKAAIKNHPDKG-GDPEK---FKELAQAYEVLSDPEKREIYDQYGEDA 63
K AS ++++A++K A+K HPDK +P F ++ +AYEVL D + R+ YD+YGE
Sbjct: 12 KTASSREIRQAFKKLALKLHPDKNPNNPNAHGDFLKINRAYEVLKDEDLRKKYDKYGEKG 71
Query: 64 LKE 66
L++
Sbjct: 72 LED 74
>pdb|2KQX|A Chain A, Nmr Structure Of The J-Domain (Residues 2-72) In The
Escherichia Coli Cbpa
Length = 73
Score = 47.8 bits (112), Expect = 8e-06, Method: Composition-based stats.
Identities = 24/47 (51%), Positives = 34/47 (72%), Gaps = 3/47 (6%)
Query: 15 LKKAYRKAAIKNHPDKGGDPE---KFKELAQAYEVLSDPEKREIYDQ 58
+K AYR+ A K HPD +P+ +FKE+A+A+EVLSD ++R YDQ
Sbjct: 22 IKTAYRRLARKYHPDVSKEPDAEARFKEVAEAWEVLSDEQRRAEYDQ 68
>pdb|1XAO|A Chain A, Hsp40-Ydj1 Dimerization Domain
pdb|1XAO|B Chain B, Hsp40-Ydj1 Dimerization Domain
Length = 121
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 21/48 (43%), Positives = 28/48 (58%)
Query: 250 FKRKGDDLFVEHTLSLTEALCGFQFVITHLDGRQLLIKSQPGEVVKPG 297
FKR GDDL E + L A+ G +F + H+ G L + PGEV+ PG
Sbjct: 2 FKRDGDDLVYEAEIDLLTAIAGGEFALEHVSGDWLKVGIVPGEVIAPG 49
>pdb|3LZ8|A Chain A, Structure Of A Putative Chaperone Dnaj From Klebsiella
Pneumoniae Subsp. Pneumoniae Mgh 78578 At 2.9 A
Resolution.
pdb|3LZ8|B Chain B, Structure Of A Putative Chaperone Dnaj From Klebsiella
Pneumoniae Subsp. Pneumoniae Mgh 78578 At 2.9 A
Resolution
Length = 329
Score = 46.2 bits (108), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/52 (55%), Positives = 35/52 (67%), Gaps = 6/52 (11%)
Query: 13 DDLKK---AYRKAAIKNHPD--KGGDPE-KFKELAQAYEVLSDPEKREIYDQ 58
DDLK AYR+ A K HPD K D E KFK+LA+A+EVL D ++R YDQ
Sbjct: 40 DDLKTIKTAYRRLARKYHPDVSKENDAEAKFKDLAEAWEVLKDEQRRAEYDQ 91
Score = 33.1 bits (74), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 39/88 (44%), Gaps = 2/88 (2%)
Query: 205 KVLEVIVEKGMQNGQKITFPGEADEAPDT-VTGDIVFVLQQKEHPKFKRKGDDLFVEHTL 263
K L V + G+ +GQ+I G+ + GD+ V+ HP F G +L + L
Sbjct: 181 KTLNVKIPAGVVDGQRIRLKGQGTPGENGGPNGDLWLVIHIAPHPLFDIVGHNLEIVLPL 240
Query: 264 SLTEALCGFQFVITHLDGRQLLIKSQPG 291
+ EA G + + L +L+ PG
Sbjct: 241 APWEAALGAKVTVPTLK-ESILLTVPPG 267
>pdb|2Y4T|A Chain A, Crystal Structure Of The Human Co-Chaperone P58(Ipk)
pdb|2Y4T|B Chain B, Crystal Structure Of The Human Co-Chaperone P58(Ipk)
pdb|2Y4T|C Chain C, Crystal Structure Of The Human Co-Chaperone P58(Ipk)
Length = 450
Score = 41.2 bits (95), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 37/58 (63%), Gaps = 7/58 (12%)
Query: 7 RKNASQDDLKKAYRKAAIKNHPDKGGD-------PEKFKELAQAYEVLSDPEKREIYD 57
++NA + ++ KAYRK A++ HPD + +KF ++A A EVLSDPE R+ +D
Sbjct: 391 KRNAKKQEIIKAYRKLALQWHPDNFQNEEEKKKAEKKFIDIAAAKEVLSDPEMRKKFD 448
>pdb|2Y4U|A Chain A, Crystal Structure Of Human P58(Ipk) In Space Group P312
Length = 450
Score = 41.2 bits (95), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 37/58 (63%), Gaps = 7/58 (12%)
Query: 7 RKNASQDDLKKAYRKAAIKNHPDKGGD-------PEKFKELAQAYEVLSDPEKREIYD 57
++NA + ++ KAYRK A++ HPD + +KF ++A A EVLSDPE R+ +D
Sbjct: 391 KRNAKKQEIIKAYRKLALQWHPDNFQNEEEKKKAEKKFIDIAAAKEVLSDPEXRKKFD 448
>pdb|2QSA|A Chain A, Crystal Structure Of J-Domain Of Dnaj Homolog Dnj-2
Precursor From C.Elegans
Length = 109
Score = 38.9 bits (89), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 33/61 (54%), Gaps = 7/61 (11%)
Query: 6 SRKNASQDDLKKAYRKAAIKNHPDKGGDPE-------KFKELAQAYEVLSDPEKREIYDQ 58
+R+ + L KAYR A K+HPD+ + E +F+ +A AYE L D E + YD
Sbjct: 24 NREEFDKQKLAKAYRALARKHHPDRVKNKEEKLLAEERFRVIATAYETLKDDEAKTNYDY 83
Query: 59 Y 59
Y
Sbjct: 84 Y 84
>pdb|2PF4|E Chain E, Crystal Structure Of The Full-Length Simian Virus 40
Small T Antigen Complexed With The Protein Phosphatase
2a Aalpha Subunit
pdb|2PF4|F Chain F, Crystal Structure Of The Full-Length Simian Virus 40
Small T Antigen Complexed With The Protein Phosphatase
2a Aalpha Subunit
pdb|2PF4|G Chain G, Crystal Structure Of The Full-Length Simian Virus 40
Small T Antigen Complexed With The Protein Phosphatase
2a Aalpha Subunit
pdb|2PF4|H Chain H, Crystal Structure Of The Full-Length Simian Virus 40
Small T Antigen Complexed With The Protein Phosphatase
2a Aalpha Subunit
Length = 174
Score = 36.6 bits (83), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 16/35 (45%), Positives = 23/35 (65%)
Query: 15 LKKAYRKAAIKNHPDKGGDPEKFKELAQAYEVLSD 49
++KAY K + HPDKGGD EK K++ Y+ + D
Sbjct: 30 MRKAYLKKCKEFHPDKGGDEEKMKKMNTLYKKMED 64
>pdb|1GH6|A Chain A, Retinoblastoma Pocket Complexed With Sv40 Large T
Antigen
Length = 114
Score = 35.8 bits (81), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 16/35 (45%), Positives = 23/35 (65%)
Query: 15 LKKAYRKAAIKNHPDKGGDPEKFKELAQAYEVLSD 49
++KAY K + HPDKGGD EK K++ Y+ + D
Sbjct: 27 MRKAYLKKCKEFHPDKGGDEEKMKKMNTLYKKMED 61
>pdb|2YUA|A Chain A, Solution Structure Of The Dnaj Domain From Human
Williams- Beuren Syndrome Chromosome Region 18 Protein
Length = 99
Score = 34.7 bits (78), Expect = 0.066, Method: Composition-based stats.
Identities = 18/53 (33%), Positives = 26/53 (49%), Gaps = 4/53 (7%)
Query: 10 ASQDDLKKAYRKAAIKNHPDKGGDP----EKFKELAQAYEVLSDPEKREIYDQ 58
A+Q +K AY + HPD+ E+F ++QAY VL R YD+
Sbjct: 29 ATQAQIKAAYYRQCFLYHPDRNSGSAEAAERFTRISQAYVVLGSATLRRKYDR 81
>pdb|2L6L|A Chain A, Solution Structure Of Human J-Protein Co-Chaperone, Dph4
Length = 155
Score = 34.7 bits (78), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 37/68 (54%), Gaps = 11/68 (16%)
Query: 9 NASQDDLKKAYRKAAIKNHPDK------GGDPE----KFKELAQAYEVLSDPEKREIYD- 57
+A+ DLK+ Y+K + HPDK G E KF E+ QA+++L + E + YD
Sbjct: 21 SANISDLKQKYQKLILMYHPDKQSTDVPAGTVEECVQKFIEIDQAWKILGNEETKREYDL 80
Query: 58 QYGEDALK 65
Q ED L+
Sbjct: 81 QRCEDDLR 88
>pdb|3UO3|A Chain A, Jac1 Co-Chaperone From Saccharomyces Cerevisiae, 5-182
Clone
pdb|3UO3|B Chain B, Jac1 Co-Chaperone From Saccharomyces Cerevisiae, 5-182
Clone
Length = 181
Score = 33.9 bits (76), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
Query: 12 QDDLKKAYRKAAIKNHPDKGGD-PEKFKELAQAYEVLSDPEKREIY 56
Q L+K YR+ ++HPD E+ L QAY L DP +R Y
Sbjct: 32 QSRLRKEYRQLQAQHHPDMAQQGSEQSSTLNQAYHTLKDPLRRSQY 77
>pdb|3UO2|A Chain A, Jac1 Co-Chaperone From Saccharomyces Cerevisiae
pdb|3UO2|B Chain B, Jac1 Co-Chaperone From Saccharomyces Cerevisiae
Length = 175
Score = 33.9 bits (76), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
Query: 12 QDDLKKAYRKAAIKNHPDKGGD-PEKFKELAQAYEVLSDPEKREIY 56
Q L+K YR+ ++HPD E+ L QAY L DP +R Y
Sbjct: 24 QSRLRKEYRQLQAQHHPDMAQQGSEQSSTLNQAYHTLKDPLRRSQY 69
>pdb|2YS8|A Chain A, Solution Structure Of The Dnaj-Like Domain From Human
Ras- Associated Protein Rap1
Length = 90
Score = 33.1 bits (74), Expect = 0.19, Method: Composition-based stats.
Identities = 18/44 (40%), Positives = 25/44 (56%), Gaps = 3/44 (6%)
Query: 7 RKNASQDDLKKAYRKAAIKNHPDK---GGDPEKFKELAQAYEVL 47
+ AS+D++ KAYRK A+ HPDK G + FK + A L
Sbjct: 36 KPGASRDEVNKAYRKLAVLLHPDKCVAPGSEDAFKAVVNARTAL 79
>pdb|1WJZ|A Chain A, Soluiotn Structure Of J-Domain Of Mouse Dnaj Like
Protein
Length = 94
Score = 33.1 bits (74), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 33/59 (55%), Gaps = 10/59 (16%)
Query: 9 NASQDDLKKAYRKAAIKNHPDK------GGDPE----KFKELAQAYEVLSDPEKREIYD 57
+A+ DLK+ Y+K + HPDK G E KF E+ QA+++L + E ++ YD
Sbjct: 27 SANMSDLKQKYQKLILLYHPDKQSADVPAGTMEECMQKFIEIDQAWKILGNEETKKKYD 85
>pdb|2GUZ|A Chain A, Structure Of The Tim14-tim16 Complex Of The
Mitochondrial Protein Import Motor
pdb|2GUZ|C Chain C, Structure Of The Tim14-tim16 Complex Of The
Mitochondrial Protein Import Motor
pdb|2GUZ|E Chain E, Structure Of The Tim14-tim16 Complex Of The
Mitochondrial Protein Import Motor
pdb|2GUZ|G Chain G, Structure Of The Tim14-tim16 Complex Of The
Mitochondrial Protein Import Motor
pdb|2GUZ|I Chain I, Structure Of The Tim14-tim16 Complex Of The
Mitochondrial Protein Import Motor
pdb|2GUZ|K Chain K, Structure Of The Tim14-tim16 Complex Of The
Mitochondrial Protein Import Motor
pdb|2GUZ|M Chain M, Structure Of The Tim14-tim16 Complex Of The
Mitochondrial Protein Import Motor
pdb|2GUZ|O Chain O, Structure Of The Tim14-tim16 Complex Of The
Mitochondrial Protein Import Motor
Length = 71
Score = 33.1 bits (74), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 27/45 (60%), Gaps = 3/45 (6%)
Query: 11 SQDDLKKAYRKAAIKNHPDKGGDPEKFKELAQAYEVLSDPEKREI 55
++ LK+ +RK + NHPDKGG P ++ +A + L EKR I
Sbjct: 28 TKKKLKEVHRKIMLANHPDKGGSPFLATKINEAKDFL---EKRGI 69
>pdb|3GX8|A Chain A, Structural And Biochemical Characterization Of Yeast
Monothiol Glutaredoxin Grx5
Length = 121
Score = 30.8 bits (68), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 24/46 (52%), Gaps = 4/46 (8%)
Query: 16 KKAYRKAAIKNHPDKGGDPEKFKELAQAYEVLSDPEKREIYDQYGE 61
K + +A I ++G DP KF AY VL DPE RE ++ E
Sbjct: 30 KCGFSRATIGLLGNQGVDPAKFA----AYNVLEDPELREGIKEFSE 71
>pdb|3MDZ|A Chain A, Crystal Structure Of Human Carbonic Anhydrase Vii [isoform
1], Ca7
Length = 281
Score = 30.4 bits (67), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 22/43 (51%)
Query: 217 NGQKITFPGEADEAPDTVTGDIVFVLQQKEHPKFKRKGDDLFV 259
N +K + GEA APD + VF+ EHP R D L++
Sbjct: 145 NAKKYSTFGEAASAPDGLAVVGVFLETGDEHPSMNRLTDALYM 187
>pdb|3ML5|A Chain A, Crystal Structure Of The C183sC217S MUTANT OF HUMAN CA VII
IN COMPLEX With Acetazolamide
Length = 269
Score = 30.4 bits (67), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 22/43 (51%)
Query: 217 NGQKITFPGEADEAPDTVTGDIVFVLQQKEHPKFKRKGDDLFV 259
N +K + GEA APD + VF+ EHP R D L++
Sbjct: 131 NAKKYSTFGEAASAPDGLAVVGVFLETGDEHPSMNRLTDALYM 173
>pdb|2ZO9|B Chain B, Malonate-Bound Structure Of The Glycerophosphodiesterase
From Enterobacter Aerogenes (Gpdq) And Characterization
Of The Native Fe2+ Metal Ion Preference
pdb|2ZO9|C Chain C, Malonate-Bound Structure Of The Glycerophosphodiesterase
From Enterobacter Aerogenes (Gpdq) And Characterization
Of The Native Fe2+ Metal Ion Preference
pdb|2ZOA|A Chain A, Malonate-bound Structure Of The Glycerophosphodiesterase
From Enterobacter Aerogenes (gpdq) Collected At 1.280
Angstrom
pdb|2ZOA|B Chain B, Malonate-bound Structure Of The Glycerophosphodiesterase
From Enterobacter Aerogenes (gpdq) Collected At 1.280
Angstrom
pdb|3D03|A Chain A, 1.9a Structure Of Glycerophoshphodiesterase (Gpdq) From
Enterobacter Aerogenes
pdb|3D03|B Chain B, 1.9a Structure Of Glycerophoshphodiesterase (Gpdq) From
Enterobacter Aerogenes
pdb|3D03|C Chain C, 1.9a Structure Of Glycerophoshphodiesterase (Gpdq) From
Enterobacter Aerogenes
pdb|3D03|D Chain D, 1.9a Structure Of Glycerophoshphodiesterase (Gpdq) From
Enterobacter Aerogenes
pdb|3D03|E Chain E, 1.9a Structure Of Glycerophoshphodiesterase (Gpdq) From
Enterobacter Aerogenes
pdb|3D03|F Chain F, 1.9a Structure Of Glycerophoshphodiesterase (Gpdq) From
Enterobacter Aerogenes
Length = 274
Score = 29.3 bits (64), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 17/36 (47%)
Query: 258 FVEHTLSLTEALCGFQFVITHLDGRQLLIKSQPGEV 293
VE SLT CG +T RQ LI + PG V
Sbjct: 181 LVERFPSLTRIFCGHNHSLTMTQYRQALISTLPGTV 216
>pdb|2CTQ|A Chain A, Solution Structure Of J-Domain From Human Dnaj Subfamily
C Menber 12
Length = 112
Score = 29.3 bits (64), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 27/45 (60%), Gaps = 4/45 (8%)
Query: 19 YRKAAIKNHPDKGGDP----EKFKELAQAYEVLSDPEKREIYDQY 59
++ A++ HPDK + E F++L +A E+L++ E R YD +
Sbjct: 41 FKVRALECHPDKHPENPKAVETFQKLQKAKEILTNEESRARYDHW 85
>pdb|2DXL|A Chain A, Glycerophosphodiesterase From Enterobacter Aerogenes
pdb|2DXL|B Chain B, Glycerophosphodiesterase From Enterobacter Aerogenes
pdb|2DXN|A Chain A, Glycerophosphodiesterase From Enterobacter Aerogenes
pdb|2DXN|B Chain B, Glycerophosphodiesterase From Enterobacter Aerogenes
Length = 274
Score = 29.3 bits (64), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 17/36 (47%)
Query: 258 FVEHTLSLTEALCGFQFVITHLDGRQLLIKSQPGEV 293
VE SLT CG +T RQ LI + PG V
Sbjct: 181 LVERFPSLTRIFCGHNHSLTMTQYRQALISTLPGTV 216
>pdb|2VRT|A Chain A, Crystal Structure Of E. Coli Rnase E Possessing M1 Rna
Fragments - Catalytic Domain
pdb|2VRT|B Chain B, Crystal Structure Of E. Coli Rnase E Possessing M1 Rna
Fragments - Catalytic Domain
pdb|2VRT|C Chain C, Crystal Structure Of E. Coli Rnase E Possessing M1 Rna
Fragments - Catalytic Domain
pdb|2VRT|D Chain D, Crystal Structure Of E. Coli Rnase E Possessing M1 Rna
Fragments - Catalytic Domain
Length = 509
Score = 28.9 bits (63), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 12/34 (35%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Query: 157 MKVSIRHLGPSMIQQMQHPCNECKGTGETINDKD 190
+++S + L PS+ + H C C GTG T+ D +
Sbjct: 385 LEMSRQRLSPSLGESSHHVCPRCSGTG-TVRDNE 417
>pdb|2VMK|A Chain A, Crystal Structure Of E. Coli Rnase E Apoprotein -
Catalytic Domain
pdb|2VMK|B Chain B, Crystal Structure Of E. Coli Rnase E Apoprotein -
Catalytic Domain
pdb|2VMK|C Chain C, Crystal Structure Of E. Coli Rnase E Apoprotein -
Catalytic Domain
pdb|2VMK|D Chain D, Crystal Structure Of E. Coli Rnase E Apoprotein -
Catalytic Domain
Length = 515
Score = 28.9 bits (63), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 12/34 (35%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Query: 157 MKVSIRHLGPSMIQQMQHPCNECKGTGETINDKD 190
+++S + L PS+ + H C C GTG T+ D +
Sbjct: 385 LEMSRQRLSPSLGESSHHVCPRCSGTG-TVRDNE 417
>pdb|2BX2|L Chain L, Catalytic Domain Of E. Coli Rnase E
pdb|2C0B|L Chain L, Catalytic Domain Of E. Coli Rnase E In Complex With 13-Mer
Rna
pdb|2C4R|L Chain L, Catalytic Domain Of E. Coli Rnase E
Length = 517
Score = 28.5 bits (62), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 12/34 (35%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Query: 157 MKVSIRHLGPSMIQQMQHPCNECKGTGETINDKD 190
+++S + L PS+ + H C C GTG T+ D +
Sbjct: 392 LEMSRQRLSPSLGESSHHVCPRCSGTG-TVRDNE 424
>pdb|1FAF|A Chain A, Nmr Structure Of The N-Terminal J Domain Of Murine
Polyomavirus T Antigens
Length = 79
Score = 28.1 bits (61), Expect = 6.6, Method: Composition-based stats.
Identities = 13/43 (30%), Positives = 24/43 (55%), Gaps = 4/43 (9%)
Query: 15 LKKAYRKAAIKNHPDKGGDPEKFKELAQAYEVLSDPEKREIYD 57
+++AY++ ++ HPDKGG +EL + K E+Y+
Sbjct: 30 MQQAYKQQSLLLHPDKGGSHALMQELNSLWGTF----KTEVYN 68
>pdb|1NZ6|A Chain A, Crystal Structure Of Auxilin J-Domain
pdb|1NZ6|B Chain B, Crystal Structure Of Auxilin J-Domain
Length = 101
Score = 27.7 bits (60), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 27/54 (50%), Gaps = 7/54 (12%)
Query: 10 ASQDDLKKAYRKAAIKNHPDKG-GDPEK------FKELAQAYEVLSDPEKREIY 56
+ + +KK YRKA + HPDK G P + F EL A+ + ++ +Y
Sbjct: 48 VTPEQVKKVYRKAVLVVHPDKATGQPYEQYAKXIFXELNDAWSEFENQGQKPLY 101
>pdb|2NLL|B Chain B, Retinoid X Receptor-Thyroid Hormone Receptor Dna-Binding
Domain Heterodimer Bound To Thyroid Response Element Dna
Length = 103
Score = 27.7 bits (60), Expect = 8.5, Method: Composition-based stats.
Identities = 13/36 (36%), Positives = 21/36 (58%), Gaps = 3/36 (8%)
Query: 169 IQQMQHPCNECKGTGETINDK---DRCPQCKGEKVI 201
IQ+ HP CK G+ + DK ++C +C+ +K I
Sbjct: 32 IQKNLHPSYSCKYEGKCVIDKVTRNQCQECRFKKCI 67
>pdb|1XI5|J Chain J, Clathrin D6 Coat With Auxilin J-Domain
pdb|1XI5|K Chain K, Clathrin D6 Coat With Auxilin J-Domain
pdb|1XI5|L Chain L, Clathrin D6 Coat With Auxilin J-Domain
pdb|1XI5|M Chain M, Clathrin D6 Coat With Auxilin J-Domain
pdb|1XI5|N Chain N, Clathrin D6 Coat With Auxilin J-Domain
pdb|1XI5|O Chain O, Clathrin D6 Coat With Auxilin J-Domain
pdb|1XI5|P Chain P, Clathrin D6 Coat With Auxilin J-Domain
pdb|1XI5|Q Chain Q, Clathrin D6 Coat With Auxilin J-Domain
pdb|1XI5|R Chain R, Clathrin D6 Coat With Auxilin J-Domain
Length = 114
Score = 27.7 bits (60), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 27/53 (50%), Gaps = 7/53 (13%)
Query: 11 SQDDLKKAYRKAAIKNHPDKG-GDPEK------FKELAQAYEVLSDPEKREIY 56
+ + +KK YRKA + HPDK G P + F EL A+ + ++ +Y
Sbjct: 62 TPEQVKKVYRKAVLVVHPDKATGQPYEQYAKMIFMELNDAWSEFENQGQKPLY 114
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.315 0.134 0.389
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,156,990
Number of Sequences: 62578
Number of extensions: 292392
Number of successful extensions: 625
Number of sequences better than 100.0: 55
Number of HSP's better than 100.0 without gapping: 41
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 546
Number of HSP's gapped (non-prelim): 62
length of query: 315
length of database: 14,973,337
effective HSP length: 99
effective length of query: 216
effective length of database: 8,778,115
effective search space: 1896072840
effective search space used: 1896072840
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 51 (24.3 bits)