Query 021275
Match_columns 315
No_of_seqs 285 out of 2127
Neff 7.9
Searched_HMMs 46136
Date Fri Mar 29 08:58:34 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021275.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/021275hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0484 DnaJ DnaJ-class molecu 100.0 6.4E-83 1.4E-87 592.0 30.0 299 1-309 7-315 (371)
2 PTZ00037 DnaJ_C chaperone prot 100.0 4.7E-76 1E-80 564.6 29.0 297 1-308 31-327 (421)
3 PRK14296 chaperone protein Dna 100.0 4.9E-73 1.1E-77 538.6 31.1 297 1-308 7-324 (372)
4 PRK14288 chaperone protein Dna 100.0 5.6E-73 1.2E-77 538.0 29.2 296 1-308 6-309 (369)
5 PRK14298 chaperone protein Dna 100.0 1.6E-71 3.5E-76 529.0 30.8 299 1-309 8-316 (377)
6 PRK14287 chaperone protein Dna 100.0 2.6E-71 5.7E-76 526.9 30.5 300 1-309 7-313 (371)
7 PRK14276 chaperone protein Dna 100.0 4.4E-71 9.6E-76 527.2 29.8 300 1-309 7-321 (380)
8 PRK14286 chaperone protein Dna 100.0 5.1E-71 1.1E-75 525.1 29.1 300 1-309 7-322 (372)
9 PRK14280 chaperone protein Dna 100.0 7.7E-71 1.7E-75 524.9 30.3 300 1-309 7-318 (376)
10 PRK14282 chaperone protein Dna 100.0 1.7E-70 3.7E-75 521.6 32.0 302 1-309 7-328 (369)
11 PRK14278 chaperone protein Dna 100.0 4.3E-70 9.2E-75 519.8 32.0 302 1-309 6-315 (378)
12 PRK14277 chaperone protein Dna 100.0 3E-70 6.5E-75 522.4 29.9 302 1-309 8-330 (386)
13 PRK14285 chaperone protein Dna 100.0 4.1E-70 8.8E-75 517.7 29.6 297 1-309 6-318 (365)
14 PRK14297 chaperone protein Dna 100.0 1.8E-69 3.8E-74 516.5 30.9 302 1-309 7-323 (380)
15 PRK14284 chaperone protein Dna 100.0 6.8E-69 1.5E-73 513.9 30.2 299 1-309 4-331 (391)
16 PRK14279 chaperone protein Dna 100.0 5.6E-69 1.2E-73 514.0 29.4 296 1-309 12-344 (392)
17 KOG0712 Molecular chaperone (D 100.0 8.7E-70 1.9E-74 497.8 21.4 298 1-308 7-305 (337)
18 PRK14281 chaperone protein Dna 100.0 1.1E-68 2.5E-73 512.9 30.0 303 1-309 6-337 (397)
19 PRK14294 chaperone protein Dna 100.0 1.7E-68 3.8E-73 507.3 28.4 297 1-308 7-314 (366)
20 TIGR02349 DnaJ_bact chaperone 100.0 2.7E-68 5.8E-73 504.9 29.5 301 1-308 3-317 (354)
21 PRK14301 chaperone protein Dna 100.0 2E-68 4.3E-73 507.5 28.2 297 1-309 7-315 (373)
22 PRK14295 chaperone protein Dna 100.0 1E-67 2.2E-72 504.9 30.4 294 1-309 12-338 (389)
23 PRK14290 chaperone protein Dna 100.0 2E-67 4.3E-72 499.9 31.2 302 1-309 6-321 (365)
24 PRK10767 chaperone protein Dna 100.0 2.7E-67 5.9E-72 500.5 30.0 295 1-309 7-313 (371)
25 PRK14300 chaperone protein Dna 100.0 3E-67 6.6E-72 499.5 29.3 298 1-308 6-316 (372)
26 PRK14291 chaperone protein Dna 100.0 5.6E-67 1.2E-71 499.3 29.3 299 1-309 6-327 (382)
27 PRK14293 chaperone protein Dna 100.0 2.1E-66 4.5E-71 494.4 27.5 303 1-309 6-318 (374)
28 PRK14292 chaperone protein Dna 100.0 7.3E-66 1.6E-70 490.7 29.4 301 1-309 5-313 (371)
29 PRK14283 chaperone protein Dna 100.0 1.5E-65 3.3E-70 489.1 30.2 296 1-309 8-321 (378)
30 PRK14289 chaperone protein Dna 100.0 1.5E-65 3.2E-70 490.6 29.1 303 1-309 8-329 (386)
31 PRK14299 chaperone protein Dna 100.0 3.3E-50 7.1E-55 371.1 21.0 226 1-309 7-252 (291)
32 PRK10266 curved DNA-binding pr 100.0 4.7E-49 1E-53 366.0 22.4 242 1-309 7-260 (306)
33 KOG0715 Molecular chaperone (D 100.0 3.6E-39 7.9E-44 295.5 11.1 239 1-267 46-288 (288)
34 KOG0713 Molecular chaperone (D 100.0 1.5E-39 3.2E-44 295.0 5.9 278 1-308 19-302 (336)
35 TIGR03835 termin_org_DnaJ term 100.0 1.1E-34 2.4E-39 285.8 20.8 103 202-308 694-796 (871)
36 KOG0714 Molecular chaperone (D 99.9 5.7E-22 1.2E-26 182.2 13.1 246 1-309 6-305 (306)
37 COG0484 DnaJ DnaJ-class molecu 99.8 1.7E-18 3.8E-23 161.7 10.4 139 109-261 136-347 (371)
38 KOG0718 Molecular chaperone (D 99.8 2.6E-19 5.7E-24 168.0 3.8 69 1-69 12-88 (546)
39 KOG0716 Molecular chaperone (D 99.8 3.4E-19 7.3E-24 157.6 3.9 65 1-65 34-102 (279)
40 PHA03102 Small T antigen; Revi 99.7 1.2E-18 2.6E-23 144.7 4.5 81 1-87 8-90 (153)
41 PTZ00341 Ring-infected erythro 99.7 9.9E-19 2.1E-23 177.1 3.5 66 1-66 576-644 (1136)
42 PRK10767 chaperone protein Dna 99.7 2.3E-17 5E-22 157.6 9.2 139 109-261 136-345 (371)
43 KOG0691 Molecular chaperone (D 99.7 1.1E-17 2.3E-22 152.8 1.1 83 1-88 8-94 (296)
44 COG2214 CbpA DnaJ-class molecu 99.7 4.9E-16 1.1E-20 136.6 11.3 60 1-60 9-73 (237)
45 KOG0717 Molecular chaperone (D 99.7 3.1E-17 6.7E-22 154.1 3.5 65 1-65 11-80 (508)
46 PF00226 DnaJ: DnaJ domain; I 99.6 5.9E-17 1.3E-21 116.0 2.3 57 1-57 3-64 (64)
47 KOG0719 Molecular chaperone (D 99.6 6.4E-17 1.4E-21 140.0 2.7 62 1-62 17-84 (264)
48 PRK14288 chaperone protein Dna 99.6 8.7E-16 1.9E-20 146.4 9.2 137 109-260 134-341 (369)
49 KOG0624 dsRNA-activated protei 99.6 4E-16 8.6E-21 142.6 6.0 64 1-65 397-467 (504)
50 PRK14282 chaperone protein Dna 99.6 7.4E-15 1.6E-19 140.2 8.5 139 109-261 146-360 (369)
51 smart00271 DnaJ DnaJ molecular 99.5 1E-14 2.2E-19 102.8 5.8 52 1-52 4-60 (60)
52 KOG0721 Molecular chaperone (D 99.5 4.4E-15 9.5E-20 127.6 4.5 63 1-63 102-168 (230)
53 PRK14298 chaperone protein Dna 99.5 4.6E-15 9.9E-20 141.8 4.9 138 109-261 135-348 (377)
54 PRK14285 chaperone protein Dna 99.5 1.8E-14 3.9E-19 137.3 8.4 138 109-261 140-350 (365)
55 PRK14277 chaperone protein Dna 99.5 8E-15 1.7E-19 140.7 6.0 137 109-260 149-361 (386)
56 PRK14290 chaperone protein Dna 99.5 2.3E-14 5E-19 136.6 7.7 138 109-261 143-353 (365)
57 PRK14294 chaperone protein Dna 99.5 2.2E-14 4.8E-19 136.8 7.1 138 109-261 138-347 (366)
58 PF00684 DnaJ_CXXCXGXG: DnaJ c 99.5 6.6E-14 1.4E-18 100.8 7.6 65 133-199 1-66 (66)
59 cd06257 DnaJ DnaJ domain or J- 99.5 3.2E-14 6.9E-19 98.4 5.6 49 1-49 3-55 (55)
60 PRK14279 chaperone protein Dna 99.5 1.9E-14 4.1E-19 138.2 6.1 135 110-259 168-373 (392)
61 PRK14301 chaperone protein Dna 99.5 3.5E-14 7.6E-19 135.6 7.7 138 109-260 138-346 (373)
62 PRK14284 chaperone protein Dna 99.5 4.8E-14 1E-18 135.5 8.2 137 110-261 153-363 (391)
63 PRK14278 chaperone protein Dna 99.5 1.1E-13 2.3E-18 132.5 8.9 137 109-260 133-346 (378)
64 PRK14286 chaperone protein Dna 99.5 7.9E-14 1.7E-18 133.2 7.9 138 109-260 144-353 (372)
65 PRK14287 chaperone protein Dna 99.5 6.3E-14 1.4E-18 133.8 7.1 138 109-261 132-345 (371)
66 PRK14300 chaperone protein Dna 99.5 6.5E-14 1.4E-18 133.8 6.9 136 110-260 140-348 (372)
67 PRK14295 chaperone protein Dna 99.5 9.6E-14 2.1E-18 133.3 8.0 138 109-260 160-368 (389)
68 PRK14293 chaperone protein Dna 99.5 1.2E-13 2.5E-18 132.2 7.3 139 109-261 137-351 (374)
69 TIGR02349 DnaJ_bact chaperone 99.4 1.4E-13 3E-18 130.9 7.4 136 109-258 137-347 (354)
70 PRK14296 chaperone protein Dna 99.4 1.8E-13 3.9E-18 130.6 7.7 137 109-259 143-356 (372)
71 PRK14276 chaperone protein Dna 99.4 1.1E-13 2.4E-18 132.6 5.9 131 116-260 150-352 (380)
72 PRK14281 chaperone protein Dna 99.4 2E-13 4.4E-18 131.4 7.4 136 109-260 157-368 (397)
73 PRK14280 chaperone protein Dna 99.4 2.2E-13 4.7E-18 130.4 7.5 138 109-260 137-349 (376)
74 KOG0550 Molecular chaperone (D 99.4 1.1E-13 2.4E-18 129.3 4.2 81 1-84 376-461 (486)
75 PTZ00100 DnaJ chaperone protei 99.4 3E-13 6.4E-18 106.8 5.3 48 1-48 68-115 (116)
76 KOG0722 Molecular chaperone (D 99.4 6.9E-14 1.5E-18 122.6 1.7 59 1-59 36-97 (329)
77 PRK14292 chaperone protein Dna 99.4 4.1E-13 8.9E-18 128.4 7.2 131 116-260 143-344 (371)
78 PRK14297 chaperone protein Dna 99.4 4.8E-13 1.1E-17 128.2 7.7 136 109-258 142-352 (380)
79 PTZ00037 DnaJ_C chaperone prot 99.4 6.1E-13 1.3E-17 128.5 7.8 128 116-257 154-359 (421)
80 PRK14289 chaperone protein Dna 99.4 5.2E-13 1.1E-17 128.3 6.8 136 109-257 148-357 (386)
81 PRK14283 chaperone protein Dna 99.4 1.1E-12 2.4E-17 125.6 8.5 131 116-260 150-352 (378)
82 PRK05014 hscB co-chaperone Hsc 99.4 5.4E-13 1.2E-17 113.8 4.9 58 1-58 4-72 (171)
83 PRK01356 hscB co-chaperone Hsc 99.4 4.5E-13 9.7E-18 113.7 4.0 58 1-58 5-71 (166)
84 PRK14291 chaperone protein Dna 99.3 5.8E-12 1.3E-16 120.8 11.5 125 109-248 150-346 (382)
85 PHA02624 large T antigen; Prov 99.3 2.5E-12 5.4E-17 127.0 4.9 56 1-56 14-71 (647)
86 PRK03578 hscB co-chaperone Hsc 99.3 3.4E-12 7.4E-17 109.3 4.7 58 1-58 9-77 (176)
87 PRK00294 hscB co-chaperone Hsc 99.3 4.4E-12 9.5E-17 108.2 5.0 58 1-58 7-75 (173)
88 KOG0720 Molecular chaperone (D 99.2 3.3E-12 7.1E-17 120.6 3.5 59 1-59 238-299 (490)
89 PF01556 CTDII: DnaJ C termina 99.1 1.5E-10 3.3E-15 86.7 4.8 52 256-309 1-52 (81)
90 COG5407 SEC63 Preprotein trans 99.0 1.3E-10 2.9E-15 109.4 1.9 63 1-63 101-172 (610)
91 TIGR00714 hscB Fe-S protein as 99.0 6.2E-10 1.4E-14 93.7 4.8 51 9-59 2-61 (157)
92 PF01556 CTDII: DnaJ C termina 98.9 4.4E-10 9.6E-15 84.2 2.2 48 205-252 27-76 (81)
93 PRK01773 hscB co-chaperone Hsc 98.8 3.9E-09 8.5E-14 90.1 4.4 56 1-56 5-71 (173)
94 PLN03165 chaperone protein dna 98.8 1.2E-08 2.6E-13 80.2 6.7 60 130-203 41-100 (111)
95 PRK14299 chaperone protein Dna 98.7 7.3E-09 1.6E-13 96.0 3.9 55 206-260 228-282 (291)
96 KOG0712 Molecular chaperone (D 98.7 3.8E-08 8.2E-13 91.4 6.6 128 110-248 122-324 (337)
97 KOG1150 Predicted molecular ch 98.6 2.2E-08 4.7E-13 85.3 2.6 57 1-57 56-117 (250)
98 KOG0723 Molecular chaperone (D 98.6 9.3E-08 2E-12 73.4 5.4 48 3-50 61-108 (112)
99 COG5269 ZUO1 Ribosome-associat 98.5 4.6E-08 1E-12 87.0 2.6 60 1-60 46-114 (379)
100 PRK10266 curved DNA-binding pr 98.5 8.4E-08 1.8E-12 89.6 4.1 52 206-258 236-287 (306)
101 PF00684 DnaJ_CXXCXGXG: DnaJ c 98.3 2.5E-07 5.4E-12 66.4 2.3 53 117-183 3-66 (66)
102 KOG1789 Endocytosis protein RM 98.3 5E-07 1.1E-11 92.9 4.8 48 1-48 1284-1336(2235)
103 TIGR02642 phage_xxxx uncharact 98.3 8.6E-07 1.9E-11 76.1 5.4 51 173-224 99-149 (186)
104 PRK09430 djlA Dna-J like membr 98.3 4.7E-07 1E-11 82.8 3.2 32 1-32 203-234 (267)
105 KOG0568 Molecular chaperone (D 98.2 1.1E-06 2.3E-11 76.7 3.9 49 1-49 50-102 (342)
106 COG1107 Archaea-specific RecJ- 98.1 1.5E-06 3.2E-11 85.0 3.0 72 131-203 3-82 (715)
107 TIGR03835 termin_org_DnaJ term 98.1 4.3E-06 9.4E-11 84.6 6.4 65 1-65 5-72 (871)
108 KOG2813 Predicted molecular ch 97.9 1.4E-05 3.1E-10 72.8 4.6 70 116-210 188-277 (406)
109 PLN03165 chaperone protein dna 97.5 6.6E-05 1.4E-09 59.2 2.7 49 116-187 45-100 (111)
110 COG1107 Archaea-specific RecJ- 97.4 0.00024 5.1E-09 69.9 4.9 57 117-187 7-82 (715)
111 KOG2813 Predicted molecular ch 96.9 0.00049 1.1E-08 63.0 2.4 60 131-202 188-258 (406)
112 TIGR02642 phage_xxxx uncharact 96.4 0.0051 1.1E-07 53.0 4.6 28 130-157 99-126 (186)
113 PF03656 Pam16: Pam16; InterP 96.1 0.0088 1.9E-07 48.4 4.6 48 2-49 62-109 (127)
114 KOG3192 Mitochondrial J-type c 96.1 0.0049 1.1E-07 51.0 2.8 52 6-57 18-78 (168)
115 COG1076 DjlA DnaJ-domain-conta 94.9 0.011 2.5E-07 50.5 1.3 47 12-58 17-72 (174)
116 KOG0715 Molecular chaperone (D 91.7 0.072 1.6E-06 49.4 0.9 60 114-187 166-231 (288)
117 PF11833 DUF3353: Protein of u 90.4 0.57 1.2E-05 40.8 5.3 38 7-48 1-38 (194)
118 COG1076 DjlA DnaJ-domain-conta 90.1 0.11 2.3E-06 44.5 0.5 48 1-48 116-164 (174)
119 cd03031 GRX_GRX_like Glutaredo 88.1 0.44 9.4E-06 39.7 2.8 24 131-159 100-123 (147)
120 KOG2824 Glutaredoxin-related p 88.1 0.5 1.1E-05 43.0 3.3 51 131-196 230-280 (281)
121 PF13446 RPT: A repeated domai 86.7 0.87 1.9E-05 31.8 3.3 41 1-48 8-48 (62)
122 KOG0431 Auxilin-like protein a 85.0 0.85 1.8E-05 45.0 3.4 26 8-33 398-423 (453)
123 KOG0724 Zuotin and related mol 84.3 1 2.2E-05 42.5 3.5 51 9-59 3-61 (335)
124 smart00709 Zpr1 Duplicated dom 81.6 5.8 0.00013 33.4 6.7 20 206-225 81-100 (160)
125 TIGR00630 uvra excinuclease AB 81.2 1.1 2.3E-05 48.2 2.5 33 148-184 738-770 (924)
126 KOG2824 Glutaredoxin-related p 79.1 1.8 3.9E-05 39.4 3.0 40 147-202 230-275 (281)
127 PRK00349 uvrA excinuclease ABC 75.1 2.7 5.8E-05 45.3 3.4 33 148-184 740-772 (943)
128 cd03031 GRX_GRX_like Glutaredo 73.9 3.2 6.9E-05 34.5 2.9 39 147-201 100-145 (147)
129 TIGR00310 ZPR1_znf ZPR1 zinc f 73.5 13 0.00027 32.4 6.6 35 148-182 2-39 (192)
130 COG0178 UvrA Excinuclease ATPa 71.1 4.4 9.6E-05 42.6 3.7 34 147-184 731-764 (935)
131 PRK14714 DNA polymerase II lar 70.7 4.2 9.1E-05 44.5 3.6 67 120-207 658-727 (1337)
132 PRK00635 excinuclease ABC subu 70.1 2.9 6.3E-05 47.8 2.4 33 148-184 1609-1641(1809)
133 TIGR00630 uvra excinuclease AB 65.9 2.8 6E-05 45.1 1.1 32 174-205 737-775 (924)
134 PF07709 SRR: Seven Residue Re 64.5 4.6 0.0001 19.6 1.2 13 36-48 2-14 (14)
135 PRK00349 uvrA excinuclease ABC 60.6 3.4 7.4E-05 44.5 0.6 28 131-158 739-773 (943)
136 TIGR03655 anti_R_Lar restricti 60.3 15 0.00033 24.7 3.6 10 148-157 3-12 (53)
137 KOG3442 Uncharacterized conser 60.2 14 0.0003 29.6 3.8 47 2-48 63-109 (132)
138 PRK12380 hydrogenase nickel in 58.5 12 0.00025 29.6 3.2 39 118-156 57-96 (113)
139 COG1198 PriA Primosomal protei 57.9 14 0.00029 38.8 4.4 50 130-198 435-484 (730)
140 COG1326 Uncharacterized archae 57.8 1.1E+02 0.0023 26.7 9.0 19 208-226 66-86 (201)
141 PRK04023 DNA polymerase II lar 57.7 7.8 0.00017 41.5 2.6 72 113-207 609-681 (1121)
142 PRK00635 excinuclease ABC subu 56.8 5 0.00011 46.0 1.1 29 130-158 1607-1642(1809)
143 TIGR00340 zpr1_rel ZPR1-relate 56.7 28 0.00062 29.4 5.4 20 206-225 78-98 (163)
144 PF14687 DUF4460: Domain of un 56.6 21 0.00047 28.1 4.4 42 8-49 4-53 (112)
145 PF03589 Antiterm: Antitermina 56.4 4.5 9.7E-05 31.0 0.5 12 174-185 33-44 (95)
146 TIGR00595 priA primosomal prot 55.6 13 0.00029 37.2 3.8 53 130-201 213-265 (505)
147 TIGR00757 RNaseEG ribonuclease 54.6 6 0.00013 38.6 1.1 28 160-187 377-404 (414)
148 PF07092 DUF1356: Protein of u 53.9 6 0.00013 35.5 0.9 15 130-144 38-52 (238)
149 PF07739 TipAS: TipAS antibiot 53.8 13 0.00028 28.9 2.8 52 5-61 51-104 (118)
150 COG0178 UvrA Excinuclease ATPa 52.4 6.1 0.00013 41.6 0.8 29 131-159 731-766 (935)
151 TIGR00100 hypA hydrogenase nic 50.9 18 0.00038 28.7 3.1 39 118-156 57-96 (115)
152 PRK14559 putative protein seri 47.9 13 0.00029 38.4 2.4 49 131-198 2-50 (645)
153 PF01155 HypA: Hydrogenase exp 47.0 15 0.00033 28.9 2.2 42 116-157 55-97 (113)
154 PRK12336 translation initiatio 46.3 1.5E+02 0.0032 25.9 8.4 12 38-49 5-16 (201)
155 PF13719 zinc_ribbon_5: zinc-r 45.8 12 0.00025 23.3 1.1 11 131-141 3-13 (37)
156 PRK00464 nrdR transcriptional 44.3 26 0.00057 29.3 3.3 37 148-184 2-39 (154)
157 PF03833 PolC_DP2: DNA polymer 43.9 7.6 0.00017 40.9 0.0 56 130-207 655-710 (900)
158 PRK11712 ribonuclease G; Provi 43.1 10 0.00023 37.8 0.8 29 159-187 388-416 (489)
159 COG3128 PiuC Uncharacterized i 43.1 43 0.00094 29.0 4.4 46 252-298 113-159 (229)
160 PF10041 DUF2277: Uncharacteri 42.9 84 0.0018 23.0 5.2 46 3-48 8-60 (78)
161 PF02814 UreE_N: UreE urease a 42.7 47 0.001 23.2 3.9 47 258-305 16-62 (65)
162 COG5552 Uncharacterized conser 41.7 87 0.0019 22.8 5.1 33 2-34 7-39 (88)
163 PF07092 DUF1356: Protein of u 41.6 17 0.00037 32.6 1.8 10 148-157 40-49 (238)
164 COG1724 Predicted RNA binding 41.2 10 0.00022 26.9 0.3 32 271-302 28-59 (66)
165 PF08273 Prim_Zn_Ribbon: Zinc- 40.5 24 0.00051 22.5 1.9 12 130-141 3-14 (40)
166 PF12434 Malate_DH: Malate deh 40.1 40 0.00087 19.5 2.5 17 12-28 10-26 (28)
167 PF14353 CpXC: CpXC protein 39.6 13 0.00028 29.7 0.8 14 172-185 37-50 (128)
168 PRK13263 ureE urease accessory 39.4 2.3E+02 0.005 24.9 8.5 48 257-305 21-68 (206)
169 PRK03564 formate dehydrogenase 38.3 33 0.00072 32.1 3.3 10 130-139 187-196 (309)
170 KOG0527 HMG-box transcription 38.3 24 0.00051 33.4 2.3 41 17-58 75-115 (331)
171 PF03367 zf-ZPR1: ZPR1 zinc-fi 38.0 50 0.0011 27.8 4.1 34 147-180 2-37 (161)
172 CHL00062 psbB photosystem II 4 37.6 83 0.0018 31.0 5.9 27 40-68 298-324 (504)
173 PF13453 zf-TFIIB: Transcripti 37.1 39 0.00084 21.3 2.5 9 173-181 19-27 (41)
174 PRK00564 hypA hydrogenase nick 36.8 51 0.0011 26.1 3.7 39 118-156 58-98 (117)
175 PRK05580 primosome assembly pr 35.1 49 0.0011 34.5 4.3 53 130-201 381-433 (679)
176 PF08792 A2L_zn_ribbon: A2L zi 34.4 31 0.00067 20.9 1.6 10 148-157 5-14 (33)
177 PRK04023 DNA polymerase II lar 34.0 25 0.00054 37.9 1.9 47 116-183 627-673 (1121)
178 PF07754 DUF1610: Domain of un 33.3 34 0.00073 19.3 1.5 7 173-179 16-22 (24)
179 PRK12380 hydrogenase nickel in 33.2 52 0.0011 25.9 3.2 7 147-153 71-77 (113)
180 PF08271 TF_Zn_Ribbon: TFIIB z 33.1 38 0.00082 21.6 2.0 9 148-156 2-10 (43)
181 PF02736 Myosin_N: Myosin N-te 32.7 67 0.0015 20.4 3.1 35 250-287 5-39 (42)
182 TIGR00100 hypA hydrogenase nic 32.4 57 0.0012 25.7 3.4 9 175-183 88-96 (115)
183 PF13717 zinc_ribbon_4: zinc-r 30.4 30 0.00066 21.3 1.2 9 131-139 3-11 (36)
184 cd01388 SOX-TCF_HMG-box SOX-TC 29.8 31 0.00067 24.5 1.3 41 17-58 14-54 (72)
185 PRK03681 hypA hydrogenase nick 29.6 68 0.0015 25.3 3.4 20 118-137 57-77 (114)
186 PF01155 HypA: Hydrogenase exp 29.1 27 0.00058 27.5 0.9 25 174-198 71-95 (113)
187 COG2371 UreE Urease accessory 29.0 1.2E+02 0.0027 25.4 4.9 37 273-310 35-71 (155)
188 PRK14873 primosome assembly pr 29.0 66 0.0014 33.5 4.0 51 130-200 383-433 (665)
189 smart00276 GLECT Galectin. Gal 28.2 68 0.0015 25.5 3.2 41 208-248 2-49 (128)
190 cd01491 Ube1_repeat1 Ubiquitin 28.1 2E+02 0.0044 26.5 6.7 59 212-273 186-254 (286)
191 PRK00488 pheS phenylalanyl-tRN 27.9 51 0.0011 31.3 2.7 20 130-157 260-279 (339)
192 PRK09678 DNA-binding transcrip 27.2 2.1E+02 0.0046 20.7 5.3 35 147-182 2-38 (72)
193 COG1530 CafA Ribonucleases G a 27.1 68 0.0015 32.1 3.6 29 159-187 381-409 (487)
194 cd01389 MATA_HMG-box MATA_HMG- 26.6 39 0.00084 24.3 1.4 43 15-58 12-54 (77)
195 cd00084 HMG-box High Mobility 26.4 34 0.00073 23.1 1.0 43 15-58 11-53 (66)
196 KOG1758 Mitochondrial F1F0-ATP 26.0 1.3E+02 0.0028 25.1 4.3 41 272-312 47-89 (159)
197 PRK03824 hypA hydrogenase nick 25.0 87 0.0019 25.5 3.3 11 129-139 69-79 (135)
198 cd01390 HMGB-UBF_HMG-box HMGB- 24.6 39 0.00083 23.0 1.0 40 18-58 14-53 (66)
199 PF12387 Peptidase_C74: Pestiv 24.6 51 0.0011 28.1 1.8 23 131-156 163-185 (200)
200 PF09285 Elong-fact-P_C: Elong 24.5 72 0.0016 21.9 2.3 20 206-225 29-48 (56)
201 PRK14890 putative Zn-ribbon RN 24.0 71 0.0015 22.2 2.2 17 176-196 39-55 (59)
202 PRK14113 urease accessory prot 24.0 2.1E+02 0.0045 23.9 5.4 46 259-305 17-62 (152)
203 KOG0315 G-protein beta subunit 24.0 54 0.0012 29.9 2.0 33 259-291 18-51 (311)
204 PF13533 Biotin_lipoyl_2: Biot 23.7 1.7E+02 0.0038 19.0 4.0 32 274-305 3-35 (50)
205 COG0089 RplW Ribosomal protein 23.4 70 0.0015 24.5 2.2 21 3-23 25-45 (94)
206 PF04246 RseC_MucC: Positive r 22.9 69 0.0015 25.8 2.3 22 204-225 41-62 (135)
207 cd01802 AN1_N ubiquitin-like d 22.8 1.5E+02 0.0032 22.8 4.1 43 245-292 5-48 (103)
208 PF14354 Lar_restr_allev: Rest 22.8 1.1E+02 0.0025 20.6 3.1 9 173-181 29-37 (61)
209 smart00440 ZnF_C2C2 C2C2 Zinc 22.8 1.6E+02 0.0034 18.5 3.5 17 148-164 2-18 (40)
210 PRK00762 hypA hydrogenase nick 22.7 1.2E+02 0.0026 24.3 3.6 22 117-139 56-78 (124)
211 smart00778 Prim_Zn_Ribbon Zinc 22.4 65 0.0014 20.1 1.6 11 131-141 4-14 (37)
212 PF13248 zf-ribbon_3: zinc-rib 22.0 44 0.00094 18.9 0.7 20 175-196 4-23 (26)
213 COG3058 FdhE Uncharacterized p 21.9 40 0.00087 31.0 0.8 16 127-142 182-197 (308)
214 PF12791 RsgI_N: Anti-sigma fa 21.7 2.2E+02 0.0047 18.9 4.3 37 270-308 4-40 (56)
215 KOG0005 Ubiquitin-like protein 21.7 75 0.0016 22.2 1.9 21 273-293 2-22 (70)
216 TIGR02098 MJ0042_CXXC MJ0042 f 21.6 76 0.0016 19.3 1.8 8 174-181 26-33 (38)
217 COG1198 PriA Primosomal protei 21.4 64 0.0014 34.0 2.2 38 131-182 445-484 (730)
218 PRK13261 ureE urease accessory 21.2 3.1E+02 0.0067 22.9 6.0 46 259-305 22-67 (159)
219 COG5402 Uncharacterized conser 21.0 1.5E+02 0.0033 25.2 4.0 38 268-309 126-163 (194)
220 PRK05580 primosome assembly pr 20.9 68 0.0015 33.4 2.4 39 130-182 390-430 (679)
221 PRK14714 DNA polymerase II lar 20.5 63 0.0014 35.9 2.0 35 146-198 667-701 (1337)
222 smart00841 Elong-fact-P_C Elon 20.5 80 0.0017 21.7 1.9 20 206-225 29-48 (56)
223 PF05180 zf-DNL: DNL zinc fing 20.4 63 0.0014 23.0 1.4 11 147-157 5-15 (66)
224 PF01096 TFIIS_C: Transcriptio 20.4 1.7E+02 0.0038 18.2 3.3 17 148-164 2-18 (39)
225 COG0143 MetG Methionyl-tRNA sy 20.4 66 0.0014 32.7 2.1 68 131-212 127-195 (558)
226 PF01333 Apocytochr_F_C: Apocy 20.4 65 0.0014 25.6 1.6 31 270-300 22-54 (118)
227 TIGR03039 PS_II_CP47 photosyst 20.2 2.2E+02 0.0048 28.2 5.4 27 40-68 298-324 (504)
No 1
>COG0484 DnaJ DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=6.4e-83 Score=591.98 Aligned_cols=299 Identities=40% Similarity=0.723 Sum_probs=270.6
Q ss_pred CeeeCCCCCCCHHHHHHHHHHHHHHhCCCCCC-CH---HHHHHHHHHHhhcCCCccccccccccccccc-cccCCC--CC
Q 021275 1 MRFSESRKNASQDDLKKAYRKAAIKNHPDKGG-DP---EKFKELAQAYEVLSDPEKREIYDQYGEDALK-EGMGGG--GG 73 (315)
Q Consensus 1 y~vLgv~~~a~~~~ik~ayr~la~~~hPd~~~-~~---~~f~~i~~Ay~~L~d~~~R~~YD~~g~~~~~-~g~~~~--~~ 73 (315)
|+||||+++||.+|||+|||+||++||||+|+ ++ ++|++|+|||||||||+||++||+||+++++ +++++. ++
T Consensus 7 YeiLGV~k~As~~EIKkAYRkLA~kyHPD~n~g~~~AeeKFKEI~eAYEVLsD~eKRa~YD~fG~~~~~~gg~gg~g~~~ 86 (371)
T COG0484 7 YEILGVSKDASEEEIKKAYRKLAKKYHPDRNPGDKEAEEKFKEINEAYEVLSDPEKRAAYDQFGHAGFKAGGFGGFGFGG 86 (371)
T ss_pred hhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHhCCHHHHHHhhccCccccccCCcCCCCcCC
Confidence 89999999999999999999999999999999 43 8999999999999999999999999999986 333321 11
Q ss_pred CC-CCcccccCcccCCCCCCCCCCCCCcCCCcceeeeeeeeeeccccceeeEeeceeeEEccCCCCCCcccCC-ceecCC
Q 021275 74 AH-DPFDIFQSFFGGSPFGGGSSRGRRQRRGEDVIHPLKVSLEDLYNGTSKKLSLSRNVICTKCKGKGSKSGA-SMKCSG 151 (315)
Q Consensus 74 ~~-~~~~~F~~~Fgg~~~~~~~~~~~~~~~~~d~~~~~~~~l~e~~~G~~~~~~~~~~~~C~~C~G~G~~~~~-~~~C~~ 151 (315)
+. +|.|||++|||++.+ ++++..++.++.|+.+.++|||+|++.|+++++.+++...|++|+|+|+..++ ..+|++
T Consensus 87 fgg~~~DIF~~~FgGg~~--~~~~~~~~~rG~Dl~~~l~isleEa~~G~~~~i~~~~~~~C~~C~GsGak~gt~~~tC~t 164 (371)
T COG0484 87 FGGDFGDIFEDFFGGGGG--GRRRPNRPRRGADLRYNLEITLEEAVFGVKKEIRVTRSVTCSTCHGSGAKPGTDPKTCPT 164 (371)
T ss_pred CCCCHHHHHHHhhcCCCc--ccCCCCCcccCCceEEEEEeEhhhhccCceeeEecceeeECCcCCCCCCCCCCCCCcCCC
Confidence 22 688999999974432 22333446789999999999999999999999999999999999999999985 678999
Q ss_pred CcCCceEEEEEecCCcceeEeeeeCCCCCCCceEeCCCCCCCccCCceEEEEeEEEEEEecccccCCcEEEEcCCcCCCC
Q 021275 152 CQGSGMKVSIRHLGPSMIQQMQHPCNECKGTGETINDKDRCPQCKGEKVIQEKKVLEVIVEKGMQNGQKITFPGEADEAP 231 (315)
Q Consensus 152 C~G~G~~~~~~~~~~g~~~~~~~~C~~C~G~G~~~~~~~~C~~C~G~g~~~~~~~~~v~Ip~G~~~G~~i~l~g~G~~~~ 231 (315)
|+|+|++...+++ |+ .+++++|+.|+|+|+++. ++|+.|+|.|++.+.++|+|+||||+.+|++|+++|+|++.+
T Consensus 165 C~G~G~v~~~~~~--g~-~~~~~~C~~C~G~G~~i~--~pC~~C~G~G~v~~~~~i~V~IPaGv~~g~~ir~~g~G~~g~ 239 (371)
T COG0484 165 CNGSGQVRTVQRT--GF-FSFQQTCPTCNGTGKIIK--DPCGKCKGKGRVKKKKSISVNIPAGVDDGDRIRLSGEGEAGP 239 (371)
T ss_pred CCCcCeEEEEEee--eE-EEEEEECCCCccceeECC--CCCCCCCCCCeEeeeeEEEEECCCCCccCCEEEEecCcccCC
Confidence 9999998887777 33 567999999999999996 999999999999999999999999999999999999999985
Q ss_pred -CCCccCEEEEEEEecCCCcEEeCCcEEEEEecCHHHHhCCCEEEEeCCCCCeEEEecCCCceeeCCcEEEEeCCCCcc
Q 021275 232 -DTVTGDIVFVLQQKEHPKFKRKGDDLFVEHTLSLTEALCGFQFVITHLDGRQLLIKSQPGEVVKPGKYNWMDVSLNLS 309 (315)
Q Consensus 232 -~~~~GDL~v~i~v~~~~~f~r~g~dL~~~~~I~l~~al~G~~~~v~tldG~~~~i~~~~~~v~~pg~~~~i~~~~~~~ 309 (315)
++++|||||.|.|++|+.|.|+|+|||++++||+.+|+||++++||||||+ +.|+|||| +++|..++|+|+|.+.
T Consensus 240 ~Ggp~GDLyv~i~v~~h~~F~R~g~dL~~~~~Is~~~AalG~~i~vptl~g~-~~l~ip~G--tq~G~~~rl~gkG~p~ 315 (371)
T COG0484 240 NGGPAGDLYVFVHVKPHPIFERDGDDLYCEVPISFTEAALGGEIEVPTLDGR-VKLKIPAG--TQTGEVFRLRGKGMPK 315 (371)
T ss_pred CCCCCccEEEEEEeecCCCeEECCCceEeccccCHHHHhcCCEEEEEecCCC-EEEecCCC--CccCcEEEEcCCCccc
Confidence 778899999999999999999999999999999999999999999999998 99999999 8889999999999875
No 2
>PTZ00037 DnaJ_C chaperone protein; Provisional
Probab=100.00 E-value=4.7e-76 Score=564.61 Aligned_cols=297 Identities=49% Similarity=0.926 Sum_probs=273.6
Q ss_pred CeeeCCCCCCCHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHhhcCCCccccccccccccccccccCCCCCCCCCccc
Q 021275 1 MRFSESRKNASQDDLKKAYRKAAIKNHPDKGGDPEKFKELAQAYEVLSDPEKREIYDQYGEDALKEGMGGGGGAHDPFDI 80 (315)
Q Consensus 1 y~vLgv~~~a~~~~ik~ayr~la~~~hPd~~~~~~~f~~i~~Ay~~L~d~~~R~~YD~~g~~~~~~g~~~~~~~~~~~~~ 80 (315)
|+||||+++||.+|||+|||+||++||||+|+++++|++|++||+||+||+||++||+||++++..+. +..+++++
T Consensus 31 Y~vLGV~~~As~~eIKkAYrkla~k~HPDk~~~~e~F~~i~~AYevLsD~~kR~~YD~~G~~~~~~~~----~~~d~~d~ 106 (421)
T PTZ00037 31 YEVLNLSKDCTTSEIKKAYRKLAIKHHPDKGGDPEKFKEISRAYEVLSDPEKRKIYDEYGEEGLEGGE----QPADASDL 106 (421)
T ss_pred HHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCchHHHHHHHHHHHHHhccHHHHHHHhhhcchhcccCC----CCcchhhh
Confidence 89999999999999999999999999999998889999999999999999999999999988765321 13456789
Q ss_pred ccCcccCCCCCCCCCCCCCcCCCcceeeeeeeeeeccccceeeEeeceeeEEccCCCCCCcccCCceecCCCcCCceEEE
Q 021275 81 FQSFFGGSPFGGGSSRGRRQRRGEDVIHPLKVSLEDLYNGTSKKLSLSRNVICTKCKGKGSKSGASMKCSGCQGSGMKVS 160 (315)
Q Consensus 81 F~~~Fgg~~~~~~~~~~~~~~~~~d~~~~~~~~l~e~~~G~~~~~~~~~~~~C~~C~G~G~~~~~~~~C~~C~G~G~~~~ 160 (315)
|+.|||++. + ..++.++.|+.+.+.|||+|+|.|+++++.+.+.+.|+.|+|+|.......+|+.|+|+|+++.
T Consensus 107 f~~~Fggg~---~---~~~~~rg~di~~~l~vtLee~~~G~~~~i~~~r~~~C~~C~G~G~~~~~~~~C~~C~G~G~~~~ 180 (421)
T PTZ00037 107 FDLIFGGGR---K---PGGKKRGEDIVSHLKVTLEQIYNGAMRKLAINKDVICANCEGHGGPKDAFVDCKLCNGQGIRVQ 180 (421)
T ss_pred HHHhhcccc---c---cccccCCCCEEEEeeeeHHHHhCCCceEEEeeccccccccCCCCCCCCCCccCCCCCCCCeEEE
Confidence 999997421 1 1223568899999999999999999999999999999999999987766788999999999888
Q ss_pred EEecCCcceeEeeeeCCCCCCCceEeCCCCCCCccCCceEEEEeEEEEEEecccccCCcEEEEcCCcCCCCCCCccCEEE
Q 021275 161 IRHLGPSMIQQMQHPCNECKGTGETINDKDRCPQCKGEKVIQEKKVLEVIVEKGMQNGQKITFPGEADEAPDTVTGDIVF 240 (315)
Q Consensus 161 ~~~~~~g~~~~~~~~C~~C~G~G~~~~~~~~C~~C~G~g~~~~~~~~~v~Ip~G~~~G~~i~l~g~G~~~~~~~~GDL~v 240 (315)
.+++++ |+++++.+|+.|.|+|+++...++|+.|+|.|++.+.++++|.||||+.+|++|+|+|+|++.+++.+|||||
T Consensus 181 ~~~~g~-~~~q~~~~C~~C~G~G~~i~~~~~C~~C~G~g~v~~~~~l~V~Ip~G~~dG~~I~~~G~Gd~~~~~~pGDLiv 259 (421)
T PTZ00037 181 IRQMGS-MIHQTQSTCNSCNGQGKIIPESKKCKNCSGKGVKKTRKILEVNIDKGVPNQHKITFHGEADEKPNEIPGNVVF 259 (421)
T ss_pred EEeecc-eeeEEEEeCCCCCCcceeccccccCCcCCCcceeeeeeEEEEeeCCCCCCCcEEEEecccCCCCCCCCCcEEE
Confidence 888888 7788899999999999999878999999999999999999999999999999999999999988889999999
Q ss_pred EEEEecCCCcEEeCCcEEEEEecCHHHHhCCCEEEEeCCCCCeEEEecCCCceeeCCcEEEEeCCCCc
Q 021275 241 VLQQKEHPKFKRKGDDLFVEHTLSLTEALCGFQFVITHLDGRQLLIKSQPGEVVKPGKYNWMDVSLNL 308 (315)
Q Consensus 241 ~i~v~~~~~f~r~g~dL~~~~~I~l~~al~G~~~~v~tldG~~~~i~~~~~~v~~pg~~~~i~~~~~~ 308 (315)
+|+++||+.|+|+|+||+++++|+|++||+|+++.|+||||+.|.|++|||+|++||++++|+|+|-+
T Consensus 260 ~I~~~ph~~F~R~G~DL~~~~~Isl~eAllG~~i~I~tLdG~~l~I~ip~g~vt~pg~~~~I~geGmP 327 (421)
T PTZ00037 260 ILNEKPHDTFKREGGDLFITKKISLYEALTGFVFYITHLDGRKLLVNTPPGEVVKPGDIKVINNEGMP 327 (421)
T ss_pred EEEecCCCCcEEeCCeEEEEEeCCHHHHhcCCEEEeeCCCCCeEEEEeCCCcccCCCcEEEeCCCCcc
Confidence 99999999999999999999999999999999999999999989999999999999999999999976
No 3
>PRK14296 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=4.9e-73 Score=538.56 Aligned_cols=297 Identities=29% Similarity=0.538 Sum_probs=262.5
Q ss_pred CeeeCCCCCCCHHHHHHHHHHHHHHhCCCCCCCH---HHHHHHHHHHhhcCCCcccccccccccccccc--ccCCC-C--
Q 021275 1 MRFSESRKNASQDDLKKAYRKAAIKNHPDKGGDP---EKFKELAQAYEVLSDPEKREIYDQYGEDALKE--GMGGG-G-- 72 (315)
Q Consensus 1 y~vLgv~~~a~~~~ik~ayr~la~~~hPd~~~~~---~~f~~i~~Ay~~L~d~~~R~~YD~~g~~~~~~--g~~~~-~-- 72 (315)
|+||||+++||.+|||+|||+||++||||+|+++ ++|++|++||+||+||+||++||+||++++.. +++++ +
T Consensus 7 Y~~Lgv~~~a~~~eik~ayrkla~~~HPD~n~~~~a~~~F~~i~~AyevLsD~~KR~~YD~~G~~~~~~~~~~~~~~~~~ 86 (372)
T PRK14296 7 YEVLGVSKTASEQEIRQAYRKLAKQYHPDLNKSPDAHDKMVEINEAADVLLDKDKRKQYDQFGHAAFDGSSGFSSNFGDF 86 (372)
T ss_pred HHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchHHHHHHHHHHHHHHhcCHHHhhhhhhccchhhcCCCCcCcCCCcc
Confidence 8999999999999999999999999999999754 89999999999999999999999999887652 11100 0
Q ss_pred ----------CCCCCcccccCcccCCCCCCCCCCCCCcCCCcceeeeeeeeeeccccceeeEeeceeeEEccCCCCCCcc
Q 021275 73 ----------GAHDPFDIFQSFFGGSPFGGGSSRGRRQRRGEDVIHPLKVSLEDLYNGTSKKLSLSRNVICTKCKGKGSK 142 (315)
Q Consensus 73 ----------~~~~~~~~F~~~Fgg~~~~~~~~~~~~~~~~~d~~~~~~~~l~e~~~G~~~~~~~~~~~~C~~C~G~G~~ 142 (315)
++.+|.++|++|||++. + +.+++.++.|+.+.+.|||+|+|.|+++++.+.+.+.|++|+|+|..
T Consensus 87 ~~~~~~~~~~g~~~f~d~f~~~fggg~---~--~~~~~~~g~di~~~l~ltlee~~~G~~~~i~~~~~~~C~~C~G~G~~ 161 (372)
T PRK14296 87 EDLFSNMGSSGFSSFTNIFSDFFGSNK---S--DYQRSTKGQSVSLDIYLTFKELLFGVDKIIELDLLTNCSKCFGSGAE 161 (372)
T ss_pred ccccccccccccccchhhhhhhcCCCc---c--CCCCcCCCCCeEEEeeccHHHhhCCeeEEEEEeeeeccCCCCCCccC
Confidence 11234467888886421 1 11234578899999999999999999999999999999999999998
Q ss_pred cCC-ceecCCCcCCceEEEEEecCCcceeEeeeeCCCCCCCceEeCCCCCCCccCCceEEEEeEEEEEEecccccCCcEE
Q 021275 143 SGA-SMKCSGCQGSGMKVSIRHLGPSMIQQMQHPCNECKGTGETINDKDRCPQCKGEKVIQEKKVLEVIVEKGMQNGQKI 221 (315)
Q Consensus 143 ~~~-~~~C~~C~G~G~~~~~~~~~~g~~~~~~~~C~~C~G~G~~~~~~~~C~~C~G~g~~~~~~~~~v~Ip~G~~~G~~i 221 (315)
... ..+|+.|+|+|+++..+++||. +++.+.+|+.|.|+|+++. .+|+.|.|.|++.+.++++|.||+|+++|++|
T Consensus 162 ~~~~~~~C~~C~G~G~~~~~~~~g~~-~~q~~~~C~~C~G~G~~~~--~~C~~C~G~g~v~~~~~~~V~Ip~G~~~G~~i 238 (372)
T PRK14296 162 SNSDIHICNNCHGTGEVLVQKNMGFF-QFQQSAKCNVCNGAGKIIK--NKCKNCKGKGKYLERKKIEVNIPKGIRPNQQI 238 (372)
T ss_pred CCCCCccCCCCCCCceEEEEEeccce-EEEEEecCCCcCCcceeec--ccccCCCCceEEEEEEEEEEEECCCCCCCCEE
Confidence 765 5679999999999988899884 4467899999999999987 89999999999999999999999999999999
Q ss_pred EEcCCcCCC-CCCCccCEEEEEEEecCCCcEEe-CCcEEEEEecCHHHHhCCCEEEEeCCCCCeEEEecCCCceeeCCcE
Q 021275 222 TFPGEADEA-PDTVTGDIVFVLQQKEHPKFKRK-GDDLFVEHTLSLTEALCGFQFVITHLDGRQLLIKSQPGEVVKPGKY 299 (315)
Q Consensus 222 ~l~g~G~~~-~~~~~GDL~v~i~v~~~~~f~r~-g~dL~~~~~I~l~~al~G~~~~v~tldG~~~~i~~~~~~v~~pg~~ 299 (315)
+|+|+|++. +++.+|||||+|+++||+.|+|+ |+|||++++|||+|||+|+++.|+||||+ +.|+||++ ++||++
T Consensus 239 ~~~g~G~~~~~~~~~GDL~v~v~v~~h~~F~R~~G~DL~~~~~Isl~eAllG~~~~i~tldG~-~~v~ip~~--t~~g~~ 315 (372)
T PRK14296 239 KLSQKGHASLNNGVNGDLIIDIYLKESKVFEIINNNDILMTYNISYLDAILGNEIIIKTLDGD-IKYKLPKS--INSNEL 315 (372)
T ss_pred EEeccccCCCCCCCCccEEEEEEEeCCCCEEEeCCCcEEEEEecCHHHHhCCCEEEeeCCCCC-EEEEECCc--cCCCcE
Confidence 999999987 57789999999999999999996 89999999999999999999999999998 89999976 999999
Q ss_pred EEEeCCCCc
Q 021275 300 NWMDVSLNL 308 (315)
Q Consensus 300 ~~i~~~~~~ 308 (315)
++|+|+|.+
T Consensus 316 ~ri~GkGmP 324 (372)
T PRK14296 316 IIINNKGLY 324 (372)
T ss_pred EEEcCCCCC
Confidence 999999986
No 4
>PRK14288 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=5.6e-73 Score=537.97 Aligned_cols=296 Identities=27% Similarity=0.537 Sum_probs=256.7
Q ss_pred CeeeCCCCCCCHHHHHHHHHHHHHHhCCCCCCCH----HHHHHHHHHHhhcCCCccccccccccccccccccCCCCCCCC
Q 021275 1 MRFSESRKNASQDDLKKAYRKAAIKNHPDKGGDP----EKFKELAQAYEVLSDPEKREIYDQYGEDALKEGMGGGGGAHD 76 (315)
Q Consensus 1 y~vLgv~~~a~~~~ik~ayr~la~~~hPd~~~~~----~~f~~i~~Ay~~L~d~~~R~~YD~~g~~~~~~g~~~~~~~~~ 76 (315)
|+||||+++||.+|||+|||+||++||||+|+.+ ++|++|++|||||+||++|++||+||++++..+.++.+++.+
T Consensus 6 Y~vLgv~~~As~~eIkkayrkla~k~HPD~~~~~~~a~~~f~~i~~AYevLsd~~kR~~YD~~G~~~~~~~~~~~~~~~~ 85 (369)
T PRK14288 6 YEILEVEKHSNQETIKKSYRKLALKYHPDRNAGDKEAEEKFKLINEAYGVLSDEKKRALYDRYGKKGLNQAGASQSDFSD 85 (369)
T ss_pred HHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCccHHHHHHHHHHHHHHHhccHHHHHHHHHhcccccccCCCCcccccc
Confidence 8999999999999999999999999999999732 799999999999999999999999999876532111111223
Q ss_pred Cc----ccccCcccCCCCCCCCCCCCCcCCCcceeeeeeeeeeccccceeeEeeceeeEEccCCCCCCcccCCceecCCC
Q 021275 77 PF----DIFQSFFGGSPFGGGSSRGRRQRRGEDVIHPLKVSLEDLYNGTSKKLSLSRNVICTKCKGKGSKSGASMKCSGC 152 (315)
Q Consensus 77 ~~----~~F~~~Fgg~~~~~~~~~~~~~~~~~d~~~~~~~~l~e~~~G~~~~~~~~~~~~C~~C~G~G~~~~~~~~C~~C 152 (315)
++ ++|++|||+++ ......++.++.|+.+.+.|||+|+|.|+++++.+.+.+.|+.|+|+|.......+|+.|
T Consensus 86 ~f~~~~~~F~~~fg~g~---~~~~~~~~~~g~di~~~l~vslee~~~G~~~~i~~~r~~~C~~C~G~G~~~~~~~~C~~C 162 (369)
T PRK14288 86 FFEDLGSFFEDAFGFGA---RGSKRQKSSIAPDYLQTIELSFKEAVFGCKKTIKVQYQSVCESCDGTGAKDKALETCKQC 162 (369)
T ss_pred chhhHHHHHHhhcCCCC---cccCcCCCCCCCCeeEeccccHHHHhCCeEEEEEEEeeccCCCCCCcccCCCCCcCCCCC
Confidence 33 35555565221 111112235688999999999999999999999999999999999999987777889999
Q ss_pred cCCceEEEEEecCCcceeEeeeeCCCCCCCceEeCCCCCCCccCCceEEEEeEEEEEEecccccCCcEEEEcCCcCCCCC
Q 021275 153 QGSGMKVSIRHLGPSMIQQMQHPCNECKGTGETINDKDRCPQCKGEKVIQEKKVLEVIVEKGMQNGQKITFPGEADEAPD 232 (315)
Q Consensus 153 ~G~G~~~~~~~~~~g~~~~~~~~C~~C~G~G~~~~~~~~C~~C~G~g~~~~~~~~~v~Ip~G~~~G~~i~l~g~G~~~~~ 232 (315)
+|+|++.... |++ +++.+|+.|.|+|+++. .+|+.|.|.|++.+.++++|.||||+++|++|+|+|+|++.++
T Consensus 163 ~G~G~~~~~~----g~~-~~~~~C~~C~G~G~~~~--~~C~~C~G~g~v~~~~~l~V~IP~G~~~G~~i~l~g~G~~~~~ 235 (369)
T PRK14288 163 NGQGQVFMRQ----GFM-SFAQTCGACQGKGKIIK--TPCQACKGKTYILKDEEIDAIIPEGIDDQNRMVLKNKGNEYEK 235 (369)
T ss_pred CCCcEEEEEe----ceE-EEEEecCCCCCCceEcc--ccCccCCCcceEEEEEEEEEecCCCCCCCCEEEEccCccCCCC
Confidence 9999765433 444 45679999999999987 8899999999999999999999999999999999999999877
Q ss_pred CCccCEEEEEEEecCCCcEEeCCcEEEEEecCHHHHhCCCEEEEeCCCCCeEEEecCCCceeeCCcEEEEeCCCCc
Q 021275 233 TVTGDIVFVLQQKEHPKFKRKGDDLFVEHTLSLTEALCGFQFVITHLDGRQLLIKSQPGEVVKPGKYNWMDVSLNL 308 (315)
Q Consensus 233 ~~~GDL~v~i~v~~~~~f~r~g~dL~~~~~I~l~~al~G~~~~v~tldG~~~~i~~~~~~v~~pg~~~~i~~~~~~ 308 (315)
+.+|||||+|++++|+.|+|+|+||+++++|||.|||+|+++.|+||||+.+.|++|++ ++||++++|+|+|.+
T Consensus 236 ~~~GDL~v~i~v~~h~~f~R~G~DL~~~~~Isl~eAllG~~i~v~tLdG~~l~i~i~~~--~~~g~~~~i~g~G~p 309 (369)
T PRK14288 236 GKRGDLYLEARVKEDEHFKREGCDLFIEAPVFFTTIALGHTIKVPSLKGDELELKIPRN--ARDRQTFAFRNEGVK 309 (369)
T ss_pred CCCCCEEEEEEEEECCCcEEeCCEEEEEEecCHHHHhcCCEEEeecCCCCEEEEEeCCC--CCCCcEEEEcCCCCC
Confidence 88999999999999999999999999999999999999999999999999889999986 999999999999977
No 5
>PRK14298 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=1.6e-71 Score=528.98 Aligned_cols=299 Identities=33% Similarity=0.611 Sum_probs=264.9
Q ss_pred CeeeCCCCCCCHHHHHHHHHHHHHHhCCCCCCCH---HHHHHHHHHHhhcCCCccccccccccccccccccCC-----CC
Q 021275 1 MRFSESRKNASQDDLKKAYRKAAIKNHPDKGGDP---EKFKELAQAYEVLSDPEKREIYDQYGEDALKEGMGG-----GG 72 (315)
Q Consensus 1 y~vLgv~~~a~~~~ik~ayr~la~~~hPd~~~~~---~~f~~i~~Ay~~L~d~~~R~~YD~~g~~~~~~g~~~-----~~ 72 (315)
|+||||+++||.+|||+|||+||++||||+|+++ ++|++|++||++|+||.+|++||+||++++..++++ ++
T Consensus 8 y~iLgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~~~~f~~i~~Ay~vL~d~~kR~~YD~~G~~g~~~~~~~~~~~~~~ 87 (377)
T PRK14298 8 YEILGLSKDASVEDIKKAYRKLAMKYHPDKNKEPDAEEKFKEISEAYAVLSDAEKRAQYDRFGHAGIDNQYSAEDIFRGA 87 (377)
T ss_pred HHhhCCCCCCCHHHHHHHHHHHHHHhCccccCChhHHHHHHHHHHHHHHhcchHhhhhhhhcCccccccccCcccccccC
Confidence 8999999999999999999999999999999754 799999999999999999999999999877533211 11
Q ss_pred CCCCCcccccCcccCCCCCCCCCCCCCcCCCcceeeeeeeeeeccccceeeEeeceeeEEccCCCCCCcccCC-ceecCC
Q 021275 73 GAHDPFDIFQSFFGGSPFGGGSSRGRRQRRGEDVIHPLKVSLEDLYNGTSKKLSLSRNVICTKCKGKGSKSGA-SMKCSG 151 (315)
Q Consensus 73 ~~~~~~~~F~~~Fgg~~~~~~~~~~~~~~~~~d~~~~~~~~l~e~~~G~~~~~~~~~~~~C~~C~G~G~~~~~-~~~C~~ 151 (315)
++.+|.|+|++|||+++ + +..+++.++.|+.+.+.|||+|+|.|+++++.+.+.+.|+.|+|+|..... ..+|+.
T Consensus 88 ~~~~~~d~f~~~Fgg~~---~-~~~~~~~~g~di~~~l~vslee~~~G~~~~i~~~r~~~C~~C~G~G~~~~~~~~~C~~ 163 (377)
T PRK14298 88 DFGGFGDIFEMFFGGGG---R-RGRMGPRRGSDLRYDLYITLEEAAFGVRKDIDVPRAERCSTCSGTGAKPGTSPKRCPT 163 (377)
T ss_pred CcCcchhhhHhhhcCCC---c-cCCCCCCCCCCEEEEEEEEHHHhhCCeEEEEEEEeeccCCCCCCCcccCCCCCCcCCC
Confidence 22346688999997421 1 111234578899999999999999999999999999999999999998766 467999
Q ss_pred CcCCceEEEEEecCCcceeEeeeeCCCCCCCceEeCCCCCCCccCCceEEEEeEEEEEEecccccCCcEEEEcCCcCCC-
Q 021275 152 CQGSGMKVSIRHLGPSMIQQMQHPCNECKGTGETINDKDRCPQCKGEKVIQEKKVLEVIVEKGMQNGQKITFPGEADEA- 230 (315)
Q Consensus 152 C~G~G~~~~~~~~~~g~~~~~~~~C~~C~G~G~~~~~~~~C~~C~G~g~~~~~~~~~v~Ip~G~~~G~~i~l~g~G~~~- 230 (315)
|+|+|+++..+++.+|+ ++++.+|+.|+|+|+++. .+|+.|.|+|++.+.++++|.||||+++|++|+|+|+|++.
T Consensus 164 C~G~G~~~~~~~~~~g~-~~~~~~C~~C~G~G~~~~--~~C~~C~G~g~v~~~~~l~V~IppG~~~G~~i~~~g~G~~~~ 240 (377)
T PRK14298 164 CGGTGQVTTTRSTPLGQ-FVTTTTCSTCHGRGQVIE--SPCPVCSGTGKVRKTRKITVNVPAGADSGLRLKLSGEGEAGS 240 (377)
T ss_pred CCCccEEEEEEecCcee-EEEEEeCCCCCCCCcccC--CCCCCCCCccEEEEEEEEEecCCCCCCCCCEEEEecccCCCC
Confidence 99999988888765454 468999999999999987 89999999999999999999999999999999999999986
Q ss_pred CCCCccCEEEEEEEecCCCcEEeCCcEEEEEecCHHHHhCCCEEEEeCCCCCeEEEecCCCceeeCCcEEEEeCCCCcc
Q 021275 231 PDTVTGDIVFVLQQKEHPKFKRKGDDLFVEHTLSLTEALCGFQFVITHLDGRQLLIKSQPGEVVKPGKYNWMDVSLNLS 309 (315)
Q Consensus 231 ~~~~~GDL~v~i~v~~~~~f~r~g~dL~~~~~I~l~~al~G~~~~v~tldG~~~~i~~~~~~v~~pg~~~~i~~~~~~~ 309 (315)
+++.+|||||+|+++||+.|+|+|+||+++++|||.+||+|+++.|+||||+ +.|+||++ ++||++++|+|+|.+.
T Consensus 241 ~~~~~GDL~i~i~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~i~tldG~-i~v~ip~g--~~~g~~lri~g~G~p~ 316 (377)
T PRK14298 241 PGAPSGDLYIVLHVKEHDYFERVGDDIISEIPISFTQAALGADIMVPTLYGK-VKMNIPPG--TQTHSVFRLKDKGMPR 316 (377)
T ss_pred CCCCCcCEEEEEEEecCCCeEEEcCcEEEEEEeCHHHHhCCCeEEEecCCCC-EEEEeCCC--cccCCEEEECCCCCCC
Confidence 5678999999999999999999999999999999999999999999999998 78999987 9999999999999763
No 6
>PRK14287 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=2.6e-71 Score=526.87 Aligned_cols=300 Identities=32% Similarity=0.616 Sum_probs=266.8
Q ss_pred CeeeCCCCCCCHHHHHHHHHHHHHHhCCCCCCCH---HHHHHHHHHHhhcCCCccccccccccccccccccCCC--CCCC
Q 021275 1 MRFSESRKNASQDDLKKAYRKAAIKNHPDKGGDP---EKFKELAQAYEVLSDPEKREIYDQYGEDALKEGMGGG--GGAH 75 (315)
Q Consensus 1 y~vLgv~~~a~~~~ik~ayr~la~~~hPd~~~~~---~~f~~i~~Ay~~L~d~~~R~~YD~~g~~~~~~g~~~~--~~~~ 75 (315)
|+||||+++||.+|||+|||+||++||||+|+++ ++|++|++||++|+||++|++||+||++++..+++++ +++.
T Consensus 7 y~~Lgv~~~a~~~eik~ayr~la~~~HpD~~~~~~~~~~f~~i~~Ay~~L~d~~kR~~YD~~G~~~~~~~~~~~~~~~f~ 86 (371)
T PRK14287 7 YEVLGVDRNASVDEVKKAYRKLARKYHPDVNKAPDAEDKFKEVKEAYDTLSDPQKKAHYDQFGHTDPNQGFGGGGAGDFG 86 (371)
T ss_pred HHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCChhHHHHHHHHHHHHHHhCcHhHHHHHHhhCCcccccccCCCCCcccc
Confidence 8999999999999999999999999999999753 7999999999999999999999999998775432111 1223
Q ss_pred CCcccccCcccCCCCCCCCCCCCCcCCCcceeeeeeeeeeccccceeeEeeceeeEEccCCCCCCcccCC-ceecCCCcC
Q 021275 76 DPFDIFQSFFGGSPFGGGSSRGRRQRRGEDVIHPLKVSLEDLYNGTSKKLSLSRNVICTKCKGKGSKSGA-SMKCSGCQG 154 (315)
Q Consensus 76 ~~~~~F~~~Fgg~~~~~~~~~~~~~~~~~d~~~~~~~~l~e~~~G~~~~~~~~~~~~C~~C~G~G~~~~~-~~~C~~C~G 154 (315)
++.|+|++|||+++ +.+.+.++.++.|+.+.+.|||+|+|.|+.+++.+.+.+.|+.|+|+|..... ..+|+.|+|
T Consensus 87 ~~~d~f~~~fgg~~---~~~~~~~~~~g~d~~~~l~vslee~~~G~~~~i~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G 163 (371)
T PRK14287 87 GFSDIFDMFFGGGG---GRRNPNAPRQGADLQYTMTLEFKEAVFGKETEIEIPREETCGTCHGSGAKPGTKPETCSHCGG 163 (371)
T ss_pred chHHHHHhhhcccc---CCCCCCCCCCCCCEEEEEEEEHHHhcCCeEEEEEEeeeccCCCCCCcccCCCCCCcccCCCCC
Confidence 45688999998531 11111223578999999999999999999999999999999999999998765 567999999
Q ss_pred CceEEEEEecCCcceeEeeeeCCCCCCCceEeCCCCCCCccCCceEEEEeEEEEEEecccccCCcEEEEcCCcCCC-CCC
Q 021275 155 SGMKVSIRHLGPSMIQQMQHPCNECKGTGETINDKDRCPQCKGEKVIQEKKVLEVIVEKGMQNGQKITFPGEADEA-PDT 233 (315)
Q Consensus 155 ~G~~~~~~~~~~g~~~~~~~~C~~C~G~G~~~~~~~~C~~C~G~g~~~~~~~~~v~Ip~G~~~G~~i~l~g~G~~~-~~~ 233 (315)
+|++...+++++|++++ +.+|+.|.|+|+++. .+|..|.|.+++.+.++++|.||||+++|++|+|+|+|++. .++
T Consensus 164 ~G~~~~~~~~~~G~~~~-~~~C~~C~G~G~~~~--~~C~~C~G~g~v~~~~~l~V~Ip~G~~~G~~i~~~G~G~~~~~~~ 240 (371)
T PRK14287 164 SGQLNVEQNTPFGRVVN-RRVCHHCEGTGKIIK--QKCATCGGKGKVRKRKKINVKVPAGIDHGQQLRVSGQGEAGVNGG 240 (371)
T ss_pred EEEEEEEEecCCceEEE-EEeCCCCCCCCcccc--ccCCCCCCeeEEeeeEEEEEEECCcCCCCCEEEEccCCcCCCCCC
Confidence 99999999999999875 789999999999987 88999999999999999999999999999999999999987 456
Q ss_pred CccCEEEEEEEecCCCcEEeCCcEEEEEecCHHHHhCCCEEEEeCCCCCeEEEecCCCceeeCCcEEEEeCCCCcc
Q 021275 234 VTGDIVFVLQQKEHPKFKRKGDDLFVEHTLSLTEALCGFQFVITHLDGRQLLIKSQPGEVVKPGKYNWMDVSLNLS 309 (315)
Q Consensus 234 ~~GDL~v~i~v~~~~~f~r~g~dL~~~~~I~l~~al~G~~~~v~tldG~~~~i~~~~~~v~~pg~~~~i~~~~~~~ 309 (315)
.+|||||+|+++||+.|+|+|+||++++.|||.+||+|+++.|+||||+ +.|+||++ ++||++++|+|+|.+.
T Consensus 241 ~~GDL~v~i~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~i~~ldg~-i~v~ip~g--~~~g~~~ri~g~G~p~ 313 (371)
T PRK14287 241 PPGDLYVVFNVKPHEFFERDGDDIYCEMPLTFPQVALGDEIEVPTLNGK-VKLKIPAG--TQTGTSFRLRGKGVPN 313 (371)
T ss_pred CCccEEEEEEEecCCCEEEecCCeEEEEeccHHHHhCCCEEEEEcCCCC-EEEEECCC--ccCCcEEEEcCCCccC
Confidence 7899999999999999999999999999999999999999999999997 89999987 9999999999999863
No 7
>PRK14276 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=4.4e-71 Score=527.19 Aligned_cols=300 Identities=33% Similarity=0.613 Sum_probs=266.9
Q ss_pred CeeeCCCCCCCHHHHHHHHHHHHHHhCCCCCCCH---HHHHHHHHHHhhcCCCccccccccccccccccccCC---C-C-
Q 021275 1 MRFSESRKNASQDDLKKAYRKAAIKNHPDKGGDP---EKFKELAQAYEVLSDPEKREIYDQYGEDALKEGMGG---G-G- 72 (315)
Q Consensus 1 y~vLgv~~~a~~~~ik~ayr~la~~~hPd~~~~~---~~f~~i~~Ay~~L~d~~~R~~YD~~g~~~~~~g~~~---~-~- 72 (315)
|+||||+++||.+|||+|||+||++||||+|+++ ++|++|++||++|+||.+|++||+||++++..++++ . +
T Consensus 7 y~~Lgv~~~a~~~eik~ayr~la~~~HpD~~~~~~a~~~f~~i~~Ay~vL~d~~kR~~YD~~G~~~~~~~~~~~~~~~~~ 86 (380)
T PRK14276 7 YDRLGVSKDASQDEIKKAYRKLSKKYHPDINKEPGAEEKYKEVQEAYETLSDPQKRAAYDQYGAAGANGGFGGGAGGFGG 86 (380)
T ss_pred HHhhCCCCCCCHHHHHHHHHHHHHHHCcCCCCCcCHHHHHHHHHHHHHHhcCHhhhhhHhhcCCccccCCCCCCCCCCCC
Confidence 8999999999999999999999999999998754 899999999999999999999999999877543211 0 0
Q ss_pred -----CCCCCcccccCcccCCCCCCCCCCCCCcCCCcceeeeeeeeeeccccceeeEeeceeeEEccCCCCCCcccCC-c
Q 021275 73 -----GAHDPFDIFQSFFGGSPFGGGSSRGRRQRRGEDVIHPLKVSLEDLYNGTSKKLSLSRNVICTKCKGKGSKSGA-S 146 (315)
Q Consensus 73 -----~~~~~~~~F~~~Fgg~~~~~~~~~~~~~~~~~d~~~~~~~~l~e~~~G~~~~~~~~~~~~C~~C~G~G~~~~~-~ 146 (315)
++.+|.++|++|||+++ +.+.+..+.++.|+.+.+.+||+|+|.|+++++.+.+.+.|+.|+|+|..... .
T Consensus 87 ~~~~~~~~~~~d~f~~~fgg~~---~~~~~~~~~~g~di~~~l~vtLee~~~G~~~~i~~~~~~~C~~C~G~G~~~~~~~ 163 (380)
T PRK14276 87 FDGSGGFGGFEDIFSSFFGGGG---ARRNPNAPRQGDDLQYRVNLDFEEAIFGKEKEVSYNREATCHTCNGSGAKPGTSP 163 (380)
T ss_pred ccccccccchhhHHHHHhCccc---cccCcCCCCCCCCEEEEEEEEHHHhcCCeEEEEEeeccccCCCCcCcccCCCCCC
Confidence 12345688999997421 11112234578899999999999999999999999999999999999998765 5
Q ss_pred eecCCCcCCceEEEEEecCCcceeEeeeeCCCCCCCceEeCCCCCCCccCCceEEEEeEEEEEEecccccCCcEEEEcCC
Q 021275 147 MKCSGCQGSGMKVSIRHLGPSMIQQMQHPCNECKGTGETINDKDRCPQCKGEKVIQEKKVLEVIVEKGMQNGQKITFPGE 226 (315)
Q Consensus 147 ~~C~~C~G~G~~~~~~~~~~g~~~~~~~~C~~C~G~G~~~~~~~~C~~C~G~g~~~~~~~~~v~Ip~G~~~G~~i~l~g~ 226 (315)
.+|+.|+|+|.+...+++++|++++ +.+|+.|.|+|+++. .+|+.|.|.|++.+.++++|.||+|+++|++|+|+|+
T Consensus 164 ~~C~~C~G~G~~~~~~~~~~G~~~~-~~~C~~C~G~G~~~~--~~C~~C~G~g~~~~~~~l~V~Ip~G~~~G~~i~l~G~ 240 (380)
T PRK14276 164 VTCGKCHGSGVITVDTQTPLGMMRR-QVTCDVCHGTGKEIK--EPCQTCHGTGHEKQAHTVSVKIPAGVETGQQIRLQGQ 240 (380)
T ss_pred ccCCCCCCeeEEEEEEecCCceEEE-EEECCCCCCCCcccc--CCCCCCCCceEEEEEEEEEEEeCCCccCCcEEEEecc
Confidence 6799999999999999999999886 789999999999987 8999999999999999999999999999999999999
Q ss_pred cCCCC-CCCccCEEEEEEEecCCCcEEeCCcEEEEEecCHHHHhCCCEEEEeCCCCCeEEEecCCCceeeCCcEEEEeCC
Q 021275 227 ADEAP-DTVTGDIVFVLQQKEHPKFKRKGDDLFVEHTLSLTEALCGFQFVITHLDGRQLLIKSQPGEVVKPGKYNWMDVS 305 (315)
Q Consensus 227 G~~~~-~~~~GDL~v~i~v~~~~~f~r~g~dL~~~~~I~l~~al~G~~~~v~tldG~~~~i~~~~~~v~~pg~~~~i~~~ 305 (315)
|++.+ +..+|||||+|+|+||+.|+|+|+||+++++|||.+||+|++++|+||||+ +.|+||++ ++||++++|+|+
T Consensus 241 G~~~~~~~~~GDL~v~i~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~v~tldg~-i~v~ip~g--~~~g~~~~i~g~ 317 (380)
T PRK14276 241 GEAGFNGGPYGDLYVVFRVEPSKKFERDGSTIYYTLPISFVQAALGDTVEVPTVHGD-VELKIPAG--TQTGKKFRLRGK 317 (380)
T ss_pred ccCCCCCCCCcCEEEEEEEEECcceeeecceEEEEEecCHHHHhCCCeEEEEcCCCc-EEEEECCC--CCCCCEEEECCC
Confidence 99874 467799999999999999999999999999999999999999999999997 79999988 899999999999
Q ss_pred CCcc
Q 021275 306 LNLS 309 (315)
Q Consensus 306 ~~~~ 309 (315)
|.+.
T Consensus 318 G~p~ 321 (380)
T PRK14276 318 GAPK 321 (380)
T ss_pred CcCC
Confidence 9864
No 8
>PRK14286 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=5.1e-71 Score=525.06 Aligned_cols=300 Identities=34% Similarity=0.660 Sum_probs=260.4
Q ss_pred CeeeCCCCCCCHHHHHHHHHHHHHHhCCCCCCCH----HHHHHHHHHHhhcCCCccccccccccccccccccCC-C-CC-
Q 021275 1 MRFSESRKNASQDDLKKAYRKAAIKNHPDKGGDP----EKFKELAQAYEVLSDPEKREIYDQYGEDALKEGMGG-G-GG- 73 (315)
Q Consensus 1 y~vLgv~~~a~~~~ik~ayr~la~~~hPd~~~~~----~~f~~i~~Ay~~L~d~~~R~~YD~~g~~~~~~g~~~-~-~~- 73 (315)
|+||||+++||.+|||+|||+||++||||+|+++ ++|++|++||+||+||++|++||+||+++++.+.++ + ++
T Consensus 7 y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~kR~~YD~~G~~g~~~~~~~~~~~~~ 86 (372)
T PRK14286 7 YDILGVSKSANDEEIKSAYRKLAIKYHPDKNKGNKESEEKFKEATEAYEILRDPKKRQAYDQFGKAGVNAGAGGFGQGAY 86 (372)
T ss_pred HHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchHHHHHHHHHHHHHHHhccHHHHHHHHHhCchhhccccCCCCCCCc
Confidence 8999999999999999999999999999998732 899999999999999999999999999877532111 0 11
Q ss_pred ------CCCCcccccCcccCCCCCC-CCCCCCCcCCCcceeeeeeeeeeccccceeeEeeceeeEEccCCCCCCcccCC-
Q 021275 74 ------AHDPFDIFQSFFGGSPFGG-GSSRGRRQRRGEDVIHPLKVSLEDLYNGTSKKLSLSRNVICTKCKGKGSKSGA- 145 (315)
Q Consensus 74 ------~~~~~~~F~~~Fgg~~~~~-~~~~~~~~~~~~d~~~~~~~~l~e~~~G~~~~~~~~~~~~C~~C~G~G~~~~~- 145 (315)
+.+|.|+|++|||++..++ +..+..++.++.|+.+.+.|||+|+|.|+++++.+.+.+.|++|+|+|.....
T Consensus 87 ~~~~~~~~~~~d~f~~ffgg~~~~~~~~~~~~~~~~g~di~~~l~vtLee~~~G~~k~i~~~r~~~C~~C~G~G~~~~~~ 166 (372)
T PRK14286 87 TDFSDIFGDFGDIFGDFFGGGRGGGSGGGRRSGPQRGSDLRYNLEVSLEDAALGREYKIEIPRLESCVDCNGSGASKGSS 166 (372)
T ss_pred ccccccccchhhHHHHhhCCCccCCCcccccCCCCCCCCeeEEEEEEHHHHhCCeeEEEEeeccccCCCCcCCCcCCCCC
Confidence 1245588999997532111 00111234578999999999999999999999999999999999999998765
Q ss_pred ceecCCCcCCceEEEEEecCCcceeEeeeeCCCCCCCceEeCCCCCCCccCCceEEEEeEEEEEEecccccCCcEEEEcC
Q 021275 146 SMKCSGCQGSGMKVSIRHLGPSMIQQMQHPCNECKGTGETINDKDRCPQCKGEKVIQEKKVLEVIVEKGMQNGQKITFPG 225 (315)
Q Consensus 146 ~~~C~~C~G~G~~~~~~~~~~g~~~~~~~~C~~C~G~G~~~~~~~~C~~C~G~g~~~~~~~~~v~Ip~G~~~G~~i~l~g 225 (315)
..+|+.|+|+|+++... |+++ ++.+|+.|+|+|+++. .+|+.|+|.|++.+.++++|.||||+++|++|+|+|
T Consensus 167 ~~~C~~C~G~G~v~~~~----G~~~-~~~~C~~C~G~G~~~~--~~C~~C~G~g~~~~~~~l~V~Ip~G~~~G~~i~~~g 239 (372)
T PRK14286 167 PTTCPDCGGSGQIRRTQ----GFFS-VATTCPTCRGKGTVIS--NPCKTCGGQGLQEKRRTINIKIPPGVETGSRLKVSG 239 (372)
T ss_pred CccCCCCcCeEEEEEEe----ceEE-EEEeCCCCCceeeEec--ccCCCCCCCcEEecceEEEEEECCCCCCCCEEEECC
Confidence 46799999999765542 5554 7889999999999987 899999999999999999999999999999999999
Q ss_pred CcCCCC-CCCccCEEEEEEEecCCCcEEeCCcEEEEEecCHHHHhCCCEEEEeCCCCCeEEEecCCCceeeCCcEEEEeC
Q 021275 226 EADEAP-DTVTGDIVFVLQQKEHPKFKRKGDDLFVEHTLSLTEALCGFQFVITHLDGRQLLIKSQPGEVVKPGKYNWMDV 304 (315)
Q Consensus 226 ~G~~~~-~~~~GDL~v~i~v~~~~~f~r~g~dL~~~~~I~l~~al~G~~~~v~tldG~~~~i~~~~~~v~~pg~~~~i~~ 304 (315)
+|++.+ +..+|||||+|+++||+.|+|+|+||+++++|+|.+||+|+++.|+||||+.+.|+||++ ++||++++|+|
T Consensus 240 ~G~~~~~~~~~GDL~i~i~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~i~tldG~~i~v~ip~g--~~~g~~~ri~G 317 (372)
T PRK14286 240 EGEAGPNGGPHGDLYVVTHIKKHELFERQGNDLILVRKISLAQAILGAEIEVPTIDGKKAKMKIPEG--TESGQVFRLKG 317 (372)
T ss_pred ccccCCCCCCCceEEEEEEEccCCCEEEecCCEEEEEEECHHHHhCCCEEEEeCCCCCEEEEEeCCc--cCCCcEEEECC
Confidence 999875 456799999999999999999999999999999999999999999999999899999987 99999999999
Q ss_pred CCCcc
Q 021275 305 SLNLS 309 (315)
Q Consensus 305 ~~~~~ 309 (315)
+|.++
T Consensus 318 ~G~P~ 322 (372)
T PRK14286 318 HGMPY 322 (372)
T ss_pred CCCCC
Confidence 99864
No 9
>PRK14280 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=7.7e-71 Score=524.85 Aligned_cols=300 Identities=33% Similarity=0.635 Sum_probs=266.1
Q ss_pred CeeeCCCCCCCHHHHHHHHHHHHHHhCCCCCCCH---HHHHHHHHHHhhcCCCccccccccccccccccccCCCC----C
Q 021275 1 MRFSESRKNASQDDLKKAYRKAAIKNHPDKGGDP---EKFKELAQAYEVLSDPEKREIYDQYGEDALKEGMGGGG----G 73 (315)
Q Consensus 1 y~vLgv~~~a~~~~ik~ayr~la~~~hPd~~~~~---~~f~~i~~Ay~~L~d~~~R~~YD~~g~~~~~~g~~~~~----~ 73 (315)
|+||||+++||.+|||+|||+||++||||+|+++ ++|++|++||++|+||.+|++||+||++++..++++++ +
T Consensus 7 y~iLgv~~~a~~~eik~ayr~la~~~HpD~~~~~~a~~~f~~i~~Ay~vL~d~~kr~~yD~~G~~~~~~~~~~~~~~~~~ 86 (376)
T PRK14280 7 YEVLGVSKSASKDEIKKAYRKLSKKYHPDINKEEGADEKFKEISEAYEVLSDDQKRAQYDQFGHAGPNQGFGGGGFGGGD 86 (376)
T ss_pred HHhhCCCCCCCHHHHHHHHHHHHHHHCcCCCCCccHHHHHHHHHHHHHHhccHhHHHHHHhcCccccccCcCCCCCCCCC
Confidence 8999999999999999999999999999998754 89999999999999999999999999987754321110 1
Q ss_pred ---CCCCcccccCcccCCCCCCCCCCCCCcCCCcceeeeeeeeeeccccceeeEeeceeeEEccCCCCCCcccCC-ceec
Q 021275 74 ---AHDPFDIFQSFFGGSPFGGGSSRGRRQRRGEDVIHPLKVSLEDLYNGTSKKLSLSRNVICTKCKGKGSKSGA-SMKC 149 (315)
Q Consensus 74 ---~~~~~~~F~~~Fgg~~~~~~~~~~~~~~~~~d~~~~~~~~l~e~~~G~~~~~~~~~~~~C~~C~G~G~~~~~-~~~C 149 (315)
..+|.|+|++|||+++ +.+....+.++.|+.+.+.|||+|+|.|+++++.+.+.+.|+.|+|+|..... ..+|
T Consensus 87 ~~~~~~~~d~f~~~fgg~~---~~~~~~~~~kg~di~~~l~vtLee~~~G~~~~i~~~r~~~C~~C~G~G~~~~~~~~~C 163 (376)
T PRK14280 87 FGGGFGFEDIFSSFFGGGG---RRRDPNAPRQGADLQYTMTLTFEEAVFGKEKEIEIPKEETCDTCHGSGAKPGTSKETC 163 (376)
T ss_pred ccccccchhhHHHHhCCcc---ccCcccccccccCEEEEEEEEHHHHhCCceeEEEEeeeccCCCCCCcccCCCCCCccC
Confidence 1145688999997431 11111223578899999999999999999999999999999999999998765 5679
Q ss_pred CCCcCCceEEEEEecCCcceeEeeeeCCCCCCCceEeCCCCCCCccCCceEEEEeEEEEEEecccccCCcEEEEcCCcCC
Q 021275 150 SGCQGSGMKVSIRHLGPSMIQQMQHPCNECKGTGETINDKDRCPQCKGEKVIQEKKVLEVIVEKGMQNGQKITFPGEADE 229 (315)
Q Consensus 150 ~~C~G~G~~~~~~~~~~g~~~~~~~~C~~C~G~G~~~~~~~~C~~C~G~g~~~~~~~~~v~Ip~G~~~G~~i~l~g~G~~ 229 (315)
+.|+|+|++...+++++|+++ .+.+|+.|+|+|+++. .+|+.|+|+|++.+.++++|.||+|+++|++|+|+|+|++
T Consensus 164 ~~C~G~G~~~~~~~~~~g~~~-~~~~C~~C~G~G~~~~--~~C~~C~G~g~v~~~~~i~V~Ip~G~~~G~~i~l~G~G~~ 240 (376)
T PRK14280 164 SHCGGSGQVSVEQNTPFGRVV-NRQTCPHCNGTGQEIK--EKCPTCHGKGKVRKRKKINVKIPAGVDNGQQIRVSGEGEP 240 (376)
T ss_pred CCCCCEEEEEEEeecCCceEE-EEEEcCCCCCCCceec--CCCCCCCCceEEEEEEEEEEEeCCCCcCCcEEEEcccccC
Confidence 999999999888899999887 5789999999999987 8999999999999999999999999999999999999998
Q ss_pred CC-CCCccCEEEEEEEecCCCcEEeCCcEEEEEecCHHHHhCCCEEEEeCCCCCeEEEecCCCceeeCCcEEEEeCCCCc
Q 021275 230 AP-DTVTGDIVFVLQQKEHPKFKRKGDDLFVEHTLSLTEALCGFQFVITHLDGRQLLIKSQPGEVVKPGKYNWMDVSLNL 308 (315)
Q Consensus 230 ~~-~~~~GDL~v~i~v~~~~~f~r~g~dL~~~~~I~l~~al~G~~~~v~tldG~~~~i~~~~~~v~~pg~~~~i~~~~~~ 308 (315)
.+ ++.+|||||+|+++||+.|+|+|+||+++++|||.|||+|+++.|+||||+ +.|+||++ ++||++++|+|+|.+
T Consensus 241 ~~~~~~~GDL~v~i~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~i~tldg~-i~v~ip~g--~~~g~~~~i~g~G~p 317 (376)
T PRK14280 241 GVNGGPAGDLYVVFRVRPHEFFERDGDDIYCEMPLTFAQAALGDEIEVPTLHGK-VKLKIPAG--TQTGTQFRLKGKGVP 317 (376)
T ss_pred CCCCCCCcCEEEEEEEecCCCeEEecCCEEEEEecCHHHHhCCCEEEEecCCce-EEEEECCC--CCCCcEEEEcCCCCC
Confidence 74 567899999999999999999999999999999999999999999999997 89999987 999999999999986
Q ss_pred c
Q 021275 309 S 309 (315)
Q Consensus 309 ~ 309 (315)
.
T Consensus 318 ~ 318 (376)
T PRK14280 318 N 318 (376)
T ss_pred C
Confidence 4
No 10
>PRK14282 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=1.7e-70 Score=521.61 Aligned_cols=302 Identities=29% Similarity=0.557 Sum_probs=264.4
Q ss_pred CeeeCCCCCCCHHHHHHHHHHHHHHhCCCCCCCH-----HHHHHHHHHHhhcCCCcccccccccccccccccc---CCCC
Q 021275 1 MRFSESRKNASQDDLKKAYRKAAIKNHPDKGGDP-----EKFKELAQAYEVLSDPEKREIYDQYGEDALKEGM---GGGG 72 (315)
Q Consensus 1 y~vLgv~~~a~~~~ik~ayr~la~~~hPd~~~~~-----~~f~~i~~Ay~~L~d~~~R~~YD~~g~~~~~~g~---~~~~ 72 (315)
|+||||+++||.+|||+|||+||++||||+|+.. ++|++|++||++|+||++|++||+||++++...+ ++++
T Consensus 7 y~~lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~~a~~~f~~i~~Ay~vL~d~~kR~~YD~~g~~~~~~~~~~~~~~g 86 (369)
T PRK14282 7 YEILGVSRNATQEEIKRAYKRLVKEWHPDRHPENRKEAEQKFKEIQEAYEVLSDPQKRAMYDRFGYVGEQPPYQETESGG 86 (369)
T ss_pred HHhcCCCCCCCHHHHHHHHHHHHHHHCCCCCccchhHHHHHHHHHHHHHHHhcChhhHHHHhhcCccccccccccCCCCC
Confidence 8999999999999999999999999999998742 7999999999999999999999999987764211 1111
Q ss_pred CC-C----CC-----cccccCcccCCCCCCCCCCCCCcCCCcceeeeeeeeeeccccceeeEeeceeeEEccCCCCCCcc
Q 021275 73 GA-H----DP-----FDIFQSFFGGSPFGGGSSRGRRQRRGEDVIHPLKVSLEDLYNGTSKKLSLSRNVICTKCKGKGSK 142 (315)
Q Consensus 73 ~~-~----~~-----~~~F~~~Fgg~~~~~~~~~~~~~~~~~d~~~~~~~~l~e~~~G~~~~~~~~~~~~C~~C~G~G~~ 142 (315)
++ . ++ .|+|++|||+++ ++.++...+.++.|+.+.+.|||+|+|.|+++++.+.+.+.|++|+|+|..
T Consensus 87 ~~~~~~~~~~~~~~~~d~f~~~fgg~~--~~~~~~~~~~~g~di~~~l~~slee~~~G~~~~i~~~r~~~C~~C~G~G~~ 164 (369)
T PRK14282 87 GFFEDIFKDFENIFNRDIFDIFFGERR--TQEEQREYARRGEDIRYEIEVTLSDLINGAEIPVEYDRYETCPHCGGTGVE 164 (369)
T ss_pred cccccccccccccccchhhhHhhcccC--CcccccCCCCCCCCeEEEEEEEHHHhcCCeEEEEEeeecccCCCCCccCCC
Confidence 11 1 11 167777887421 111111234578999999999999999999999999999999999999998
Q ss_pred cCC-ceecCCCcCCceEEEEEecCCcceeEeeeeCCCCCCCceEeCCCCCCCccCCceEEEEeEEEEEEecccccCCcEE
Q 021275 143 SGA-SMKCSGCQGSGMKVSIRHLGPSMIQQMQHPCNECKGTGETINDKDRCPQCKGEKVIQEKKVLEVIVEKGMQNGQKI 221 (315)
Q Consensus 143 ~~~-~~~C~~C~G~G~~~~~~~~~~g~~~~~~~~C~~C~G~G~~~~~~~~C~~C~G~g~~~~~~~~~v~Ip~G~~~G~~i 221 (315)
... ..+|+.|+|+|+++..++++||++++ +.+|+.|+|+|+++. .+|+.|.|.|++.+.++++|.||||+.+|++|
T Consensus 165 ~~~~~~~C~~C~G~G~~~~~~~~~~G~~~~-~~~C~~C~G~G~~~~--~~C~~C~G~g~v~~~~~l~V~Ip~G~~~G~~i 241 (369)
T PRK14282 165 PGSGYVTCPKCHGTGRIREERRSFFGVFVS-ERTCERCGGTGKIPG--EYCHECGGSGRIRRRVRTTVKIPAGVEDGTVL 241 (369)
T ss_pred CCCCCcCCCCCCCcCEEEEEEEccCcceEE-EEECCCCCCcceeCC--CCCCCCCCceeEEEEEEEEEEeCCCCCCCCEE
Confidence 765 56799999999999999999999875 779999999999987 89999999999999999999999999999999
Q ss_pred EEcCCcCCC-CCCCccCEEEEEEEecCCCcEEeCCcEEEEEecCHHHHhCCCEEEEeCCCCCeEEEecCCCceeeCCcEE
Q 021275 222 TFPGEADEA-PDTVTGDIVFVLQQKEHPKFKRKGDDLFVEHTLSLTEALCGFQFVITHLDGRQLLIKSQPGEVVKPGKYN 300 (315)
Q Consensus 222 ~l~g~G~~~-~~~~~GDL~v~i~v~~~~~f~r~g~dL~~~~~I~l~~al~G~~~~v~tldG~~~~i~~~~~~v~~pg~~~ 300 (315)
+|+|+|++. .++.+|||||+|+++||+.|+|+|+||+++++|||.||++|+++.|+||||+.+.|+||++ ++||+++
T Consensus 242 ~~~g~G~~~~~~~~~GDl~i~i~v~~h~~F~r~G~DL~~~~~Isl~eAl~G~~~~i~~ldG~~i~v~Ip~g--~~~g~~i 319 (369)
T PRK14282 242 RITGGGNAGYYGGPYGDLYVIVRVRPDPRFKRSGSDLIYDVTIDYLQAILGTTVEVPLPEGGTTMLKIPPG--TQPETVF 319 (369)
T ss_pred EEecccCCCCCCCCCCCEEEEEEEecCCcEEEecCCEEEEEEeCHHHHhCCCEEEEeCCCCcEEEEEeCCC--cCCCCEE
Confidence 999999986 4677899999999999999999999999999999999999999999999999899999998 9999999
Q ss_pred EEeCCCCcc
Q 021275 301 WMDVSLNLS 309 (315)
Q Consensus 301 ~i~~~~~~~ 309 (315)
+|+|+|.++
T Consensus 320 ri~GkG~p~ 328 (369)
T PRK14282 320 RLKGKGLPN 328 (369)
T ss_pred EECCCCCCC
Confidence 999999763
No 11
>PRK14278 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=4.3e-70 Score=519.77 Aligned_cols=302 Identities=31% Similarity=0.594 Sum_probs=264.5
Q ss_pred CeeeCCCCCCCHHHHHHHHHHHHHHhCCCCCCCH---HHHHHHHHHHhhcCCCcccccccccccccccccc-CCC--CCC
Q 021275 1 MRFSESRKNASQDDLKKAYRKAAIKNHPDKGGDP---EKFKELAQAYEVLSDPEKREIYDQYGEDALKEGM-GGG--GGA 74 (315)
Q Consensus 1 y~vLgv~~~a~~~~ik~ayr~la~~~hPd~~~~~---~~f~~i~~Ay~~L~d~~~R~~YD~~g~~~~~~g~-~~~--~~~ 74 (315)
|+||||+++||.+|||+|||+||++||||+|+++ ++|++|++||+||+||.+|++||+||++....+. +++ +++
T Consensus 6 y~iLgv~~~a~~~eik~ayr~la~~~hpD~~~~~~a~~~f~~i~~Ay~vL~d~~~r~~YD~~G~~~~~~~~~~~g~~~~f 85 (378)
T PRK14278 6 YGLLGVSRNASDAEIKRAYRKLARELHPDVNPDEEAQEKFKEISVAYEVLSDPEKRRIVDLGGDPLESAGGGGGGFGGGF 85 (378)
T ss_pred ceecCCCCCCCHHHHHHHHHHHHHHHCCCCCCcHHHHHHHHHHHHHHHHhchhhhhhhhhccCCccccccCCCCCCCcCc
Confidence 8999999999999999999999999999999864 7999999999999999999999999986432211 000 112
Q ss_pred CCCcccccCcccCCCCCCCCCCCCCcCCCcceeeeeeeeeeccccceeeEeeceeeEEccCCCCCCcccCC-ceecCCCc
Q 021275 75 HDPFDIFQSFFGGSPFGGGSSRGRRQRRGEDVIHPLKVSLEDLYNGTSKKLSLSRNVICTKCKGKGSKSGA-SMKCSGCQ 153 (315)
Q Consensus 75 ~~~~~~F~~~Fgg~~~~~~~~~~~~~~~~~d~~~~~~~~l~e~~~G~~~~~~~~~~~~C~~C~G~G~~~~~-~~~C~~C~ 153 (315)
.++.|+|++|||+++ ++......+.++.|+.+.+.|||+|+|.|+++++.+.+.+.|+.|+|+|..... ..+|+.|+
T Consensus 86 ~~~~d~f~~ffgg~g--~~~~~~~~~~~g~d~~~~l~vtLee~~~G~~~~i~~~~~~~C~~C~G~G~~~~~~~~~C~~C~ 163 (378)
T PRK14278 86 GGLGDVFEAFFGGGA--ASRGPRGRVRPGSDSLLRMRLDLEECATGVTKQVTVDTAVLCDRCHGKGTAGDSKPVTCDTCG 163 (378)
T ss_pred CchhHHHHHHhCCCC--CCCCCccCCCCCCCeEEEEEEEHHHhcCCeEEEEEEEeeccCCCCcCccCCCCCCceecCCcc
Confidence 345688999998531 111111123578999999999999999999999999999999999999998765 56799999
Q ss_pred CCceEEEEEecCCcceeEeeeeCCCCCCCceEeCCCCCCCccCCceEEEEeEEEEEEecccccCCcEEEEcCCcCCCC-C
Q 021275 154 GSGMKVSIRHLGPSMIQQMQHPCNECKGTGETINDKDRCPQCKGEKVIQEKKVLEVIVEKGMQNGQKITFPGEADEAP-D 232 (315)
Q Consensus 154 G~G~~~~~~~~~~g~~~~~~~~C~~C~G~G~~~~~~~~C~~C~G~g~~~~~~~~~v~Ip~G~~~G~~i~l~g~G~~~~-~ 232 (315)
|+|++...+++.+|+++. +.+|+.|+|+|+++. .+|+.|.|.|++.+.++++|.||||+++|++|+|+|+|++.+ +
T Consensus 164 G~G~~~~~~~~~~g~~~~-~~~C~~C~G~G~~~~--~~C~~C~G~g~v~~~~~~~V~Ip~G~~~G~~i~~~g~G~~~~~~ 240 (378)
T PRK14278 164 GRGEVQTVQRSFLGQVMT-SRPCPTCRGVGEVIP--DPCHECAGDGRVRARREITVKIPAGVGDGMRIRLAAQGEVGPGG 240 (378)
T ss_pred CceEEEEEEeccceeEEE-EEECCCCCccceeeC--CCCCCCCCceeEecceEEEEEECCCCCCCcEEEEccCcCCCCCC
Confidence 999988888888888874 679999999999987 889999999999999999999999999999999999999875 4
Q ss_pred CCccCEEEEEEEecCCCcEEeCCcEEEEEecCHHHHhCCCEEEEeCCCCCeEEEecCCCceeeCCcEEEEeCCCCcc
Q 021275 233 TVTGDIVFVLQQKEHPKFKRKGDDLFVEHTLSLTEALCGFQFVITHLDGRQLLIKSQPGEVVKPGKYNWMDVSLNLS 309 (315)
Q Consensus 233 ~~~GDL~v~i~v~~~~~f~r~g~dL~~~~~I~l~~al~G~~~~v~tldG~~~~i~~~~~~v~~pg~~~~i~~~~~~~ 309 (315)
+.+|||||+|+++||+.|+|+|+||+++++|+|.+||+|+++.|+|||+..+.|.||++ ++||++++|+|+|.+.
T Consensus 241 ~~~GDL~v~i~~~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~i~tld~~~i~v~ip~g--~~~g~~lrl~g~G~p~ 315 (378)
T PRK14278 241 GPAGDLYVEVHEQPHDVFVRDGDDLHCTVSVPMVDAALGTTVTVEAILDGPSEITIPPG--TQPGSVITLRGRGMPH 315 (378)
T ss_pred CCCCCEEEEEEECcCCCEEEcCCCEEEEEecCHHHHhcCCeEEEecCCCCeEEEEeCCC--cCCCcEEEECCCCCCC
Confidence 56799999999999999999999999999999999999999999999777899999988 9999999999999764
No 12
>PRK14277 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=3e-70 Score=522.45 Aligned_cols=302 Identities=33% Similarity=0.632 Sum_probs=263.6
Q ss_pred CeeeCCCCCCCHHHHHHHHHHHHHHhCCCCCCCH----HHHHHHHHHHhhcCCCccccccccccccccccc-cCCC----
Q 021275 1 MRFSESRKNASQDDLKKAYRKAAIKNHPDKGGDP----EKFKELAQAYEVLSDPEKREIYDQYGEDALKEG-MGGG---- 71 (315)
Q Consensus 1 y~vLgv~~~a~~~~ik~ayr~la~~~hPd~~~~~----~~f~~i~~Ay~~L~d~~~R~~YD~~g~~~~~~g-~~~~---- 71 (315)
|+||||+++||.+|||+|||+||++||||+|++. ++|++|++||++|+||.+|++||+||++++..+ ++++
T Consensus 8 y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~kr~~yD~~G~~~~~~~~~~~~~~~~ 87 (386)
T PRK14277 8 YEILGVDRNATEEEIKKAYRRLAKKYHPDLNPGDKEAEQKFKEINEAYEILSDPQKRAQYDQFGHAAFDPGGFGQGGFGQ 87 (386)
T ss_pred HHhcCCCCCCCHHHHHHHHHHHHHHHCCCcCCCchHHHHHHHHHHHHHHHhCCHHHHHHHHhhccccccccccccCCcCC
Confidence 8999999999999999999999999999998742 799999999999999999999999998876531 1100
Q ss_pred CC---------CCCCcccccCcccCCCCCCC-CCCCCCcCCCcceeeeeeeeeeccccceeeEeeceeeEEccCCCCCCc
Q 021275 72 GG---------AHDPFDIFQSFFGGSPFGGG-SSRGRRQRRGEDVIHPLKVSLEDLYNGTSKKLSLSRNVICTKCKGKGS 141 (315)
Q Consensus 72 ~~---------~~~~~~~F~~~Fgg~~~~~~-~~~~~~~~~~~d~~~~~~~~l~e~~~G~~~~~~~~~~~~C~~C~G~G~ 141 (315)
++ +.++.++|++||++. |+++ .++...+.++.|+.+.+.|||+|+|.|+++++.+.+.+.|++|+|+|.
T Consensus 88 ~g~~~~~~~~~~~~~~d~f~~~F~~~-fgg~~~~~~~~~~kg~di~~~l~vtLee~~~G~~~~v~~~r~~~C~~C~G~G~ 166 (386)
T PRK14277 88 GGFGGGGFDFDFGGFGDIFEDIFGDF-FGTGRRRAETGPQKGADIRYDLELTFEEAAFGTEKEIEVERFEKCDVCKGSGA 166 (386)
T ss_pred CCccccCccccccchhHHHHHhhccc-ccCCCcCCCCCCCCCCCEEEEEEEEHHHHhCCeEEEEEEEeeccCCCCCCCCc
Confidence 01 022346677777632 2221 111122457899999999999999999999999999999999999999
Q ss_pred ccCC-ceecCCCcCCceEEEEEecCCcceeEeeeeCCCCCCCceEeCCCCCCCccCCceEEEEeEEEEEEecccccCCcE
Q 021275 142 KSGA-SMKCSGCQGSGMKVSIRHLGPSMIQQMQHPCNECKGTGETINDKDRCPQCKGEKVIQEKKVLEVIVEKGMQNGQK 220 (315)
Q Consensus 142 ~~~~-~~~C~~C~G~G~~~~~~~~~~g~~~~~~~~C~~C~G~G~~~~~~~~C~~C~G~g~~~~~~~~~v~Ip~G~~~G~~ 220 (315)
.... ..+|+.|+|+|+++..+++++|++++. .+|+.|.|+|+++. .+|+.|+|+|++.+.++++|.||+|+++|++
T Consensus 167 ~~~~~~~~C~~C~G~G~~~~~~~~~~G~~~~~-~~C~~C~G~G~~~~--~~C~~C~G~g~v~~~~~l~V~Ip~G~~~G~~ 243 (386)
T PRK14277 167 KPGSKPVTCPVCHGTGQVRTRQNTPFGRIVNI-RTCDRCHGEGKIIT--DPCNKCGGTGRIRRRRKIKVNIPAGIDDGQM 243 (386)
T ss_pred CCCCCCccCCCCCCEEEEEEEEeccCceEEEE-EECCCCCcceeecc--CCCCCCCCCcEEeeeeEEEEecCCCccCCcE
Confidence 8765 567999999999999999999998765 79999999999987 8999999999999999999999999999999
Q ss_pred EEEcCCcCCC-CCCCccCEEEEEEEecCCCcEEeCCcEEEEEecCHHHHhCCCEEEEeCCCCCeEEEecCCCceeeCCcE
Q 021275 221 ITFPGEADEA-PDTVTGDIVFVLQQKEHPKFKRKGDDLFVEHTLSLTEALCGFQFVITHLDGRQLLIKSQPGEVVKPGKY 299 (315)
Q Consensus 221 i~l~g~G~~~-~~~~~GDL~v~i~v~~~~~f~r~g~dL~~~~~I~l~~al~G~~~~v~tldG~~~~i~~~~~~v~~pg~~ 299 (315)
|+|+|+|++. .++.+|||||+|++++|+.|+|+|+||+++++|+|+|||+|+++.|+||||+ +.|.||++ ++||++
T Consensus 244 i~~~g~G~~~~~~~~~GDL~v~i~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~i~tldG~-~~v~ip~g--~~~g~~ 320 (386)
T PRK14277 244 ITLRGEGEPGIKGGPNGDLYIVIKVKPHPLFKREGYNVYLEMPITFTDAALGGEIEIPTLDGK-VKFTIPEG--TQTGTK 320 (386)
T ss_pred EEEccccccCCCCCCCccEEEEEEEecCCCeEEecCCEEEEEEcCHHHHhCCCEEEEEcCCCC-EEEEECCC--CCCCCE
Confidence 9999999986 4567899999999999999999999999999999999999999999999998 89999988 899999
Q ss_pred EEEeCCCCcc
Q 021275 300 NWMDVSLNLS 309 (315)
Q Consensus 300 ~~i~~~~~~~ 309 (315)
++|+|+|-+.
T Consensus 321 ~ri~g~G~p~ 330 (386)
T PRK14277 321 FRLRGKGIPH 330 (386)
T ss_pred EEECCCCCCC
Confidence 9999999763
No 13
>PRK14285 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=4.1e-70 Score=517.69 Aligned_cols=297 Identities=35% Similarity=0.643 Sum_probs=260.3
Q ss_pred CeeeCCCCCCCHHHHHHHHHHHHHHhCCCCCCCH----HHHHHHHHHHhhcCCCccccccccccccccccccC--CC-CC
Q 021275 1 MRFSESRKNASQDDLKKAYRKAAIKNHPDKGGDP----EKFKELAQAYEVLSDPEKREIYDQYGEDALKEGMG--GG-GG 73 (315)
Q Consensus 1 y~vLgv~~~a~~~~ik~ayr~la~~~hPd~~~~~----~~f~~i~~Ay~~L~d~~~R~~YD~~g~~~~~~g~~--~~-~~ 73 (315)
|+||||+++||.+|||+|||+||++||||+|++. ++|++|++||++|+||++|+.||+||+.++..+.+ +. ++
T Consensus 6 y~iLgv~~~a~~~eIk~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~kr~~yd~~g~~~~~~~~~~~~~~~g 85 (365)
T PRK14285 6 YEILGLSKGASKDEIKKAYRKIAIKYHPDKNKGNKEAESIFKEATEAYEVLIDDNKRAQYDRFGHTAFEGGGGFEGFSGG 85 (365)
T ss_pred HHhcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHcCcchhHHHHhcCcchhccCCCccccCCC
Confidence 8999999999999999999999999999998742 79999999999999999999999999987753211 10 01
Q ss_pred -------CCCCcccccCcccCCCCCCCCCCCCCcCCCcceeeeeeeeeeccccceeeEeeceeeEEccCCCCCCcccCC-
Q 021275 74 -------AHDPFDIFQSFFGGSPFGGGSSRGRRQRRGEDVIHPLKVSLEDLYNGTSKKLSLSRNVICTKCKGKGSKSGA- 145 (315)
Q Consensus 74 -------~~~~~~~F~~~Fgg~~~~~~~~~~~~~~~~~d~~~~~~~~l~e~~~G~~~~~~~~~~~~C~~C~G~G~~~~~- 145 (315)
+.+|.++|++|||++. + +.+.+.+.++.|+.+.+.|||+|+|.|+++++.+.+.+.|+.|+|+|.....
T Consensus 86 ~~~~~~~~~~~~d~f~~~fgg~~-~--~~~~~~~~~g~di~~~l~vtlee~~~G~~~~i~~~r~~~C~~C~G~G~~~~~~ 162 (365)
T PRK14285 86 FSGFSDIFEDFGDIFDSFFTGNR-G--QDKNRKHEKGQDLTYQIEISLEDAYLGYKNNINITRNMLCESCLGKKSEKGTS 162 (365)
T ss_pred ccccccccccHHHHHHHhhcCCc-C--CCCCcCCCCCCCEEEEEEEEHHHhhCCeEEEEEeeecccCCCCCCcccCCCCC
Confidence 1235578888887421 1 1111223578999999999999999999999999999999999999998765
Q ss_pred ceecCCCcCCceEEEEEecCCcceeEeeeeCCCCCCCceEeCCCCCCCccCCceEEEEeEEEEEEecccccCCcEEEEcC
Q 021275 146 SMKCSGCQGSGMKVSIRHLGPSMIQQMQHPCNECKGTGETINDKDRCPQCKGEKVIQEKKVLEVIVEKGMQNGQKITFPG 225 (315)
Q Consensus 146 ~~~C~~C~G~G~~~~~~~~~~g~~~~~~~~C~~C~G~G~~~~~~~~C~~C~G~g~~~~~~~~~v~Ip~G~~~G~~i~l~g 225 (315)
..+|+.|+|+|+++. ++|++ +++.+|+.|.|+|+++. .+|+.|+|+|++.+.++++|+||||+++|++|+|+|
T Consensus 163 ~~~C~~C~G~G~~~~----~~G~~-~~~~~C~~C~G~G~~~~--~~C~~C~G~g~v~~~~~~~V~Ip~G~~~G~~i~~~g 235 (365)
T PRK14285 163 PSICNMCNGSGRVMQ----GGGFF-RVTTTCPKCYGNGKIIS--NPCKSCKGKGSLKKKETIELKIPAGIDDNQQIKMRG 235 (365)
T ss_pred CccCCCccCceeEEe----cCcee-EEeeecCCCCCcccccC--CCCCCCCCCCEEeccEEEEEEECCCCCCCCEEEEee
Confidence 567999999997653 56777 57999999999999987 899999999999999999999999999999999999
Q ss_pred CcCCCCC-CCccCEEEEEEEecCCCcEEeCCcEEEEEecCHHHHhCCCEEEEeCCCCCeEEEecCCCceeeCCcEEEEeC
Q 021275 226 EADEAPD-TVTGDIVFVLQQKEHPKFKRKGDDLFVEHTLSLTEALCGFQFVITHLDGRQLLIKSQPGEVVKPGKYNWMDV 304 (315)
Q Consensus 226 ~G~~~~~-~~~GDL~v~i~v~~~~~f~r~g~dL~~~~~I~l~~al~G~~~~v~tldG~~~~i~~~~~~v~~pg~~~~i~~ 304 (315)
+|++.++ +.+|||||+|++++|+.|+|+|+||+++++|||.+||+|+++.|+||||+.+.|+||++ ++||++++|+|
T Consensus 236 ~G~~~~~~~~~GDL~v~i~v~~h~~f~R~G~dL~~~~~Isl~eAl~G~~~~i~tldG~~v~V~Ip~g--~~~g~~irl~G 313 (365)
T PRK14285 236 KGSVNPDNQQYGDLYIKILIKPHKIFKRNGKDLYATLPISFTQAALGKEIKIQTIASKKIKIKIPKG--TENDEQIIIKN 313 (365)
T ss_pred ccccCCCCCCCCCEEEEEEEecCCCeEEeccceEEEEecCHHHHhCCCEEEEECCCCCEEEEEeCCC--cCCCcEEEECC
Confidence 9998754 66899999999999999999999999999999999999999999999999899999987 99999999999
Q ss_pred CCCcc
Q 021275 305 SLNLS 309 (315)
Q Consensus 305 ~~~~~ 309 (315)
+|.+.
T Consensus 314 kG~p~ 318 (365)
T PRK14285 314 EGMPI 318 (365)
T ss_pred CCccC
Confidence 99863
No 14
>PRK14297 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=1.8e-69 Score=516.45 Aligned_cols=302 Identities=34% Similarity=0.644 Sum_probs=265.5
Q ss_pred CeeeCCCCCCCHHHHHHHHHHHHHHhCCCCCCCH----HHHHHHHHHHhhcCCCccccccccccccccccc--cCC-C-C
Q 021275 1 MRFSESRKNASQDDLKKAYRKAAIKNHPDKGGDP----EKFKELAQAYEVLSDPEKREIYDQYGEDALKEG--MGG-G-G 72 (315)
Q Consensus 1 y~vLgv~~~a~~~~ik~ayr~la~~~hPd~~~~~----~~f~~i~~Ay~~L~d~~~R~~YD~~g~~~~~~g--~~~-~-~ 72 (315)
|+||||+++||.+|||+|||+||++||||+|++. ++|++|++||++|+||.+|++||+||++++..+ ++. + +
T Consensus 7 y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~~r~~yD~~G~~~~~~~~~~~~~~~~ 86 (380)
T PRK14297 7 YEVLGLEKGASDDEIKKAFRKLAIKYHPDKNKGNKEAEEKFKEINEAYQVLSDPQKKAQYDQFGTADFNGAGGFGSGGFG 86 (380)
T ss_pred HHhhCCCCCCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHhcCHhhhCchhhcCcccccccCCCCCCCCC
Confidence 8999999999999999999999999999999742 799999999999999999999999999877531 110 1 1
Q ss_pred C-----CCCCcccccCcccCCCCCCCCCCCCCcCCCcceeeeeeeeeeccccceeeEeeceeeEEccCCCCCCcccCC-c
Q 021275 73 G-----AHDPFDIFQSFFGGSPFGGGSSRGRRQRRGEDVIHPLKVSLEDLYNGTSKKLSLSRNVICTKCKGKGSKSGA-S 146 (315)
Q Consensus 73 ~-----~~~~~~~F~~~Fgg~~~~~~~~~~~~~~~~~d~~~~~~~~l~e~~~G~~~~~~~~~~~~C~~C~G~G~~~~~-~ 146 (315)
+ ..+|.|+|++|||++ ++++.++...+.++.|+.+.+.|||+|+|.|+++++.+.+.+.|+.|+|+|..... .
T Consensus 87 ~~~~~~~~~~~d~f~~~fgg~-~g~~~~~~~~~~kg~di~~~l~vsLee~~~G~~~~i~~~r~~~C~~C~G~G~~~~~~~ 165 (380)
T PRK14297 87 GFDFSDMGGFGDIFDSFFGGG-FGSSSRRRNGPQRGADIEYTINLTFEEAVFGVEKEISVTRNENCETCNGTGAKPGTSP 165 (380)
T ss_pred CcCcccccchhHHHHHHhccC-ccccccccCCCCCCCCEEEEEEEEHHHhcCCeEEEEEeeeeccCCCcccccccCCCcC
Confidence 1 123558899999852 21111111233578899999999999999999999999999999999999998765 5
Q ss_pred eecCCCcCCceEEEEEecCCcceeEeeeeCCCCCCCceEeCCCCCCCccCCceEEEEeEEEEEEecccccCCcEEEEcCC
Q 021275 147 MKCSGCQGSGMKVSIRHLGPSMIQQMQHPCNECKGTGETINDKDRCPQCKGEKVIQEKKVLEVIVEKGMQNGQKITFPGE 226 (315)
Q Consensus 147 ~~C~~C~G~G~~~~~~~~~~g~~~~~~~~C~~C~G~G~~~~~~~~C~~C~G~g~~~~~~~~~v~Ip~G~~~G~~i~l~g~ 226 (315)
.+|+.|+|+|++...+++++|+++ ++.+|+.|+|+|.++. .+|..|+|.|++.+.++++|.||||+++|++|+|+|+
T Consensus 166 ~~C~~C~G~G~~~~~~~~~~G~~~-~~~~C~~C~G~G~~~~--~~C~~C~G~g~v~~~~~i~V~Ip~G~~~G~~I~l~g~ 242 (380)
T PRK14297 166 KTCDKCGGTGQIRVQRNTPLGSFV-STTTCDKCGGSGKVIE--DPCNKCHGKGKVRKNRKIKVNVPAGVDTGNVIPLRGQ 242 (380)
T ss_pred ccCCCccCeEEEEEEEEcCCceeE-EEEeCCCCCCCceEcC--CCCCCCCCCeEEEeEeEEEEEeCCCCCCCcEEEEecC
Confidence 679999999999888999999876 4889999999999987 8999999999999999999999999999999999999
Q ss_pred cCCCC-CCCccCEEEEEEEecCCCcEEeCCcEEEEEecCHHHHhCCCEEEEeCCCCCeEEEecCCCceeeCCcEEEEeCC
Q 021275 227 ADEAP-DTVTGDIVFVLQQKEHPKFKRKGDDLFVEHTLSLTEALCGFQFVITHLDGRQLLIKSQPGEVVKPGKYNWMDVS 305 (315)
Q Consensus 227 G~~~~-~~~~GDL~v~i~v~~~~~f~r~g~dL~~~~~I~l~~al~G~~~~v~tldG~~~~i~~~~~~v~~pg~~~~i~~~ 305 (315)
|++.+ +..+|||||+|++++|+.|+|+|+||+++++|+|++||+|+++.|+||||+ +.|+||++ ++||++++|+|+
T Consensus 243 G~~~~~~~~~GDL~v~v~v~~h~~f~R~G~DL~~~~~Isl~eAl~G~~~~i~~ldg~-~~v~ip~g--~~~g~~~ri~g~ 319 (380)
T PRK14297 243 GEHGKNGGPTGDLYINIRVAPHKTFKRKGFDIYIDKHISFAKAALGTEIKVPTVDGE-VKYEVPAG--TQPGTVFRLKGK 319 (380)
T ss_pred ccCCCCCCCCccEEEEEEEcCCCCEEEeCCCEEEEEEeCHHHHhCCCcEEEEcCCCc-EEEEECCC--cCCCCEEEEcCC
Confidence 99864 567899999999999999999999999999999999999999999999997 89999988 999999999999
Q ss_pred CCcc
Q 021275 306 LNLS 309 (315)
Q Consensus 306 ~~~~ 309 (315)
|.+.
T Consensus 320 G~p~ 323 (380)
T PRK14297 320 GVPR 323 (380)
T ss_pred CcCC
Confidence 9864
No 15
>PRK14284 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=6.8e-69 Score=513.89 Aligned_cols=299 Identities=33% Similarity=0.596 Sum_probs=257.2
Q ss_pred CeeeCCCCCCCHHHHHHHHHHHHHHhCCCCCCCH----HHHHHHHHHHhhcCCCccccccccccccccccccC--CCCCC
Q 021275 1 MRFSESRKNASQDDLKKAYRKAAIKNHPDKGGDP----EKFKELAQAYEVLSDPEKREIYDQYGEDALKEGMG--GGGGA 74 (315)
Q Consensus 1 y~vLgv~~~a~~~~ik~ayr~la~~~hPd~~~~~----~~f~~i~~Ay~~L~d~~~R~~YD~~g~~~~~~g~~--~~~~~ 74 (315)
|+||||+++||.+|||+|||+||++||||+|++. ++|++|++||++|+||++|++||+||++++..+.+ +++++
T Consensus 4 y~iLgv~~~a~~~eikkayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~kR~~YD~~G~~g~~~g~~~~~~~g~ 83 (391)
T PRK14284 4 YTILGVSKTASPEEIKKAYRKLAVKYHPDKNPGDAEAEKRFKEVSEAYEVLSDAQKRESYDRYGKDGPFAGAGGFGGAGM 83 (391)
T ss_pred HHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchHHHHHHHHHHHHHHHhcCHHHHHHHHhccccccccccCCcCCCCc
Confidence 8999999999999999999999999999999843 79999999999999999999999999887632210 00010
Q ss_pred ------------------CCCcccccCcccCCC--CCCCCCCCCCcCCCcceeeeeeeeeeccccceeeEeeceeeEEcc
Q 021275 75 ------------------HDPFDIFQSFFGGSP--FGGGSSRGRRQRRGEDVIHPLKVSLEDLYNGTSKKLSLSRNVICT 134 (315)
Q Consensus 75 ------------------~~~~~~F~~~Fgg~~--~~~~~~~~~~~~~~~d~~~~~~~~l~e~~~G~~~~~~~~~~~~C~ 134 (315)
..+.++|++||++.+ |+++ ....++.++.|+.+.+.|||+|+|.|+++++.+.+.+.|+
T Consensus 84 ~~~~~~~~~~~~~f~~~~~~~~d~f~~~fgg~g~~~~~~-~~~~~~~~g~d~~~~l~vslee~~~G~~~~i~~~r~~~C~ 162 (391)
T PRK14284 84 GNMEDALRTFMGAFGGEFGGGGSFFEGLFGGLGEAFGMR-GGPAGARQGASKKVHITLSFEEAAKGVEKELLVSGYKSCD 162 (391)
T ss_pred CcccchhhhccccccccccccccchhhhccCcccccccc-ccCCCcCCCCCeEEEEEEEHHHHhCCeeEEEEEeeeccCC
Confidence 011367777876421 1111 1112235688999999999999999999999999999999
Q ss_pred CCCCCCcccCC-ceecCCCcCCceEEEEEecCCcceeEeeeeCCCCCCCceEeCCCCCCCccCCceEEEEeEEEEEEecc
Q 021275 135 KCKGKGSKSGA-SMKCSGCQGSGMKVSIRHLGPSMIQQMQHPCNECKGTGETINDKDRCPQCKGEKVIQEKKVLEVIVEK 213 (315)
Q Consensus 135 ~C~G~G~~~~~-~~~C~~C~G~G~~~~~~~~~~g~~~~~~~~C~~C~G~G~~~~~~~~C~~C~G~g~~~~~~~~~v~Ip~ 213 (315)
+|+|+|..... ..+|+.|+|+|.++..+ |+++ ++.+|+.|+|+|+++. ++|+.|.|.|++.+.++++|.|||
T Consensus 163 ~C~G~G~~~~~~~~~C~~C~G~G~v~~~~----G~~~-~~~~C~~C~G~G~~~~--~~C~~C~G~g~v~~~~~l~V~Ip~ 235 (391)
T PRK14284 163 ACSGSGANSSQGIKVCDRCKGSGQVVQSR----GFFS-MASTCPECGGEGRVIT--DPCSVCRGQGRIKDKRSVHVHIPA 235 (391)
T ss_pred CCcccccCCCCCCeecCccCCeeEEEEEe----ceEE-EEEECCCCCCCCcccC--CcCCCCCCcceecceEEEEEEECC
Confidence 99999998765 57799999999876543 4554 6789999999999987 899999999999999999999999
Q ss_pred cccCCcEEEEcCCcCCCC-CCCccCEEEEEEEecCCCcEEeCCcEEEEEecCHHHHhCCCEEEEeCCC-CCeEEEecCCC
Q 021275 214 GMQNGQKITFPGEADEAP-DTVTGDIVFVLQQKEHPKFKRKGDDLFVEHTLSLTEALCGFQFVITHLD-GRQLLIKSQPG 291 (315)
Q Consensus 214 G~~~G~~i~l~g~G~~~~-~~~~GDL~v~i~v~~~~~f~r~g~dL~~~~~I~l~~al~G~~~~v~tld-G~~~~i~~~~~ 291 (315)
|+++|++|+|+|+|++.+ ++.+|||||+|+++||+.|+|+|+||+++++|||.+||+|++++|+||| |+.+.|+||++
T Consensus 236 G~~~G~~i~~~g~G~~~~~~~~~GDL~v~i~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~v~tld~g~~i~v~Ip~g 315 (391)
T PRK14284 236 GVDSGMRLKMEGYGDAGQNGAPAGDLYVFIDVEPHPVFERRGDDLILELPIGFVDAALGMKKEIPTLLKEGTCRLTIPEG 315 (391)
T ss_pred CCCCCCEEEEeccccCCCCCCCCCCEEEEEEEecCCCceeecCCEEEEEEecHHHHhCCCeEEEeecCCCcEEEEEECCc
Confidence 999999999999999875 5778999999999999999999999999999999999999999999999 67799999987
Q ss_pred ceeeCCcEEEEeCCCCcc
Q 021275 292 EVVKPGKYNWMDVSLNLS 309 (315)
Q Consensus 292 ~v~~pg~~~~i~~~~~~~ 309 (315)
++||++++|+|+|.+.
T Consensus 316 --~~~g~~~~i~g~G~p~ 331 (391)
T PRK14284 316 --IQSGTILKVRGQGFPN 331 (391)
T ss_pred --cCCCeEEEECCCCCCC
Confidence 9999999999999874
No 16
>PRK14279 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=5.6e-69 Score=513.99 Aligned_cols=296 Identities=32% Similarity=0.582 Sum_probs=251.1
Q ss_pred CeeeCCCCCCCHHHHHHHHHHHHHHhCCCCCCCH----HHHHHHHHHHhhcCCCccccccccccccccccccC-------
Q 021275 1 MRFSESRKNASQDDLKKAYRKAAIKNHPDKGGDP----EKFKELAQAYEVLSDPEKREIYDQYGEDALKEGMG------- 69 (315)
Q Consensus 1 y~vLgv~~~a~~~~ik~ayr~la~~~hPd~~~~~----~~f~~i~~Ay~~L~d~~~R~~YD~~g~~~~~~g~~------- 69 (315)
|+||||+++||.+|||+|||+||++||||+|+++ ++|++|++||+||+||+||++||+||+++...++.
T Consensus 12 y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vLsD~~KR~~YD~~G~~~~~~g~~~~~~~~~ 91 (392)
T PRK14279 12 YKELGVSSDASAEEIKKAYRKLARELHPDANPGDPAAEERFKAVSEAHDVLSDPAKRKEYDETRRLFAGGGFGGRRFDGG 91 (392)
T ss_pred HHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCChHHHHHHHHHHHHHHHhcchhhhhHHHHhhhhccccccccccccCC
Confidence 7999999999999999999999999999999732 89999999999999999999999998743221110
Q ss_pred -CCCC--------CCCCc---------------ccccCcccCCCCCCCCCCCCCcCCCcceeeeeeeeeeccccceeeEe
Q 021275 70 -GGGG--------AHDPF---------------DIFQSFFGGSPFGGGSSRGRRQRRGEDVIHPLKVSLEDLYNGTSKKL 125 (315)
Q Consensus 70 -~~~~--------~~~~~---------------~~F~~~Fgg~~~~~~~~~~~~~~~~~d~~~~~~~~l~e~~~G~~~~~ 125 (315)
+.++ ..+++ ++|+.||+++ ++..+...+.++.|+.+.+.|||+|+|.|+++++
T Consensus 92 ~~~~g~~~~~~~~~~d~~~~f~~~~~~~~~~f~d~f~~~fg~~---~~~~~~~~~~~g~di~~~l~ltLee~~~G~~~~v 168 (392)
T PRK14279 92 GGFGGFGTGGDGAEFNLNDLFDAAGRGGGGGIGDLFGGLFNRG---GGSARPSRPRRGNDLETETTLDFVEAAKGVTMPL 168 (392)
T ss_pred CCCCCccccccccCcChhhhhcccccccccchhhhhhhhhcCC---CcccccCCCCCCCCeEEEEEEEHHHHhCCeEEEE
Confidence 0000 01222 3444445421 1111122345788999999999999999999999
Q ss_pred eceeeEEccCCCCCCcccCC-ceecCCCcCCceEEEEEecCCcceeEeeeeCCCCCCCceEeCCCCCCCccCCceEEEEe
Q 021275 126 SLSRNVICTKCKGKGSKSGA-SMKCSGCQGSGMKVSIRHLGPSMIQQMQHPCNECKGTGETINDKDRCPQCKGEKVIQEK 204 (315)
Q Consensus 126 ~~~~~~~C~~C~G~G~~~~~-~~~C~~C~G~G~~~~~~~~~~g~~~~~~~~C~~C~G~G~~~~~~~~C~~C~G~g~~~~~ 204 (315)
.+.+.+.|++|+|+|..... ..+|+.|+|+|+++..+ |++ +++.+|+.|+|+|+++. .+|..|.|.|++.+.
T Consensus 169 ~~~~~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~----g~~-~~~~~C~~C~G~G~~i~--~~C~~C~G~g~v~~~ 241 (392)
T PRK14279 169 RLTSPAPCTTCHGSGARPGTSPKVCPTCNGSGVISRNQ----GAF-GFSEPCTDCRGTGSIIE--DPCEECKGTGVTTRT 241 (392)
T ss_pred eeeccccCCCCccccccCCCCCCCCCCCcceEEEEEEe----cce-EEEEecCCCCceeEEeC--CcCCCCCCCeEEEEe
Confidence 99999999999999998764 56799999999876543 333 46799999999999987 899999999999999
Q ss_pred EEEEEEecccccCCcEEEEcCCcCCCC-CCCccCEEEEEEEecCCCcEEeCCcEEEEEecCHHHHhCCCEEEEeCCCCCe
Q 021275 205 KVLEVIVEKGMQNGQKITFPGEADEAP-DTVTGDIVFVLQQKEHPKFKRKGDDLFVEHTLSLTEALCGFQFVITHLDGRQ 283 (315)
Q Consensus 205 ~~~~v~Ip~G~~~G~~i~l~g~G~~~~-~~~~GDL~v~i~v~~~~~f~r~g~dL~~~~~I~l~~al~G~~~~v~tldG~~ 283 (315)
++++|.||||+++|++|+|+|+|++.+ +..+|||||+|+++||+.|+|+|+||+++++|||.+||+|+++.|+||||+
T Consensus 242 ~~~~V~Ip~G~~~G~~i~~~g~G~~~~~~~~~GDL~i~i~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~v~~ldg~- 320 (392)
T PRK14279 242 RTINVRIPPGVEDGQRIRLAGQGEAGLRGAPSGDLYVTVHVRPDKVFGRDGDDLTVTVPVSFTELALGSTLSVPTLDGP- 320 (392)
T ss_pred eeeEEEeCCCCCCCcEEEEeCCccCCCCCCCCCCEEEEEEEecCCcceeecCcEEEEEEccHHHHcCCceEEEEcCCce-
Confidence 999999999999999999999999875 566799999999999999999999999999999999999999999999997
Q ss_pred EEEecCCCceeeCCcEEEEeCCCCcc
Q 021275 284 LLIKSQPGEVVKPGKYNWMDVSLNLS 309 (315)
Q Consensus 284 ~~i~~~~~~v~~pg~~~~i~~~~~~~ 309 (315)
+.|+||++ ++||++++|+|+|.+.
T Consensus 321 i~v~Ip~g--~~~g~~iri~g~G~p~ 344 (392)
T PRK14279 321 VGVKVPAG--TADGRILRVRGRGVPK 344 (392)
T ss_pred EEEEECCC--CCCCCEEEECCCCCCC
Confidence 89999998 9999999999999763
No 17
>KOG0712 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=8.7e-70 Score=497.77 Aligned_cols=298 Identities=57% Similarity=0.959 Sum_probs=275.1
Q ss_pred CeeeCCCCCCCHHHHHHHHHHHHHHhCCCCCCCH-HHHHHHHHHHhhcCCCccccccccccccccccccCCCCCCCCCcc
Q 021275 1 MRFSESRKNASQDDLKKAYRKAAIKNHPDKGGDP-EKFKELAQAYEVLSDPEKREIYDQYGEDALKEGMGGGGGAHDPFD 79 (315)
Q Consensus 1 y~vLgv~~~a~~~~ik~ayr~la~~~hPd~~~~~-~~f~~i~~Ay~~L~d~~~R~~YD~~g~~~~~~g~~~~~~~~~~~~ 79 (315)
|+||+|+++||++|||+|||+||++||||+||++ ++|++|++||||||||+||++||+||+++++.|.++++ +..
T Consensus 7 y~il~v~~~As~~eikkayrkla~k~HpDkn~~~~ekfkei~~AyevLsd~ekr~~yD~~g~~~~~~g~~~~g-~~~--- 82 (337)
T KOG0712|consen 7 YDILGVSPDASEEEIKKAYRKLALKYHPDKNPDAGEKFKEISQAYEVLSDPEKREIYDQYGEEGLQGGGGGGG-FGG--- 82 (337)
T ss_pred ceeeccCCCcCHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHhcCHHHHHHHHhhhhhhhcccCCCCC-Ccc---
Confidence 8999999999999999999999999999999988 99999999999999999999999999999976533222 112
Q ss_pred cccCcccCCCCCCCCCCCCCcCCCcceeeeeeeeeeccccceeeEeeceeeEEccCCCCCCcccCCceecCCCcCCceEE
Q 021275 80 IFQSFFGGSPFGGGSSRGRRQRRGEDVIHPLKVSLEDLYNGTSKKLSLSRNVICTKCKGKGSKSGASMKCSGCQGSGMKV 159 (315)
Q Consensus 80 ~F~~~Fgg~~~~~~~~~~~~~~~~~d~~~~~~~~l~e~~~G~~~~~~~~~~~~C~~C~G~G~~~~~~~~C~~C~G~G~~~ 159 (315)
|++||+.++.+ + + ...++.|+.+.++++|+|+|.|.+.++.+++..+|+.|+|+|..+....+|+.|.|+|..+
T Consensus 83 -f~~~F~~g~~~-~-~---~~~rg~~~~~~~~~~Le~~y~G~s~kl~l~~~~iCs~C~GsGgksg~~~~C~~C~GsGv~~ 156 (337)
T KOG0712|consen 83 -FSQFFGFGGNG-G-R---GRQRGKDVVHQLKVTLEELYMGKSKKLFLSRNFICSKCSGSGGKSGSAPKCTTCRGSGVQT 156 (337)
T ss_pred -HHHhccCCCcC-c-c---ccccCCCceEEEEEEHHHhhcCCccceecccCccCCcCCCCCCCCCCCCCCCCCCCCCcee
Confidence 77777632211 1 1 1123899999999999999999999999999999999999999999888999999999999
Q ss_pred EEEecCCcceeEeeeeCCCCCCCceEeCCCCCCCccCCceEEEEeEEEEEEecccccCCcEEEEcCCcCCCCCCCccCEE
Q 021275 160 SIRHLGPSMIQQMQHPCNECKGTGETINDKDRCPQCKGEKVIQEKKVLEVIVEKGMQNGQKITFPGEADEAPDTVTGDIV 239 (315)
Q Consensus 160 ~~~~~~~g~~~~~~~~C~~C~G~G~~~~~~~~C~~C~G~g~~~~~~~~~v~Ip~G~~~G~~i~l~g~G~~~~~~~~GDL~ 239 (315)
..++++|||+|+++..|..|.|+|.++..++.|+.|.|.+++.+.+.++|.|++|+.+++++.+.|++++.++..+||++
T Consensus 157 ~~~~~gPg~~qs~q~~C~~C~G~G~~~~~kd~C~~C~G~~~v~~kkil~v~V~~g~~~~~ki~f~geadea~g~~pgD~v 236 (337)
T KOG0712|consen 157 RTRQMGPGMVQSPQLVCDSCNGSGETISLKDRCKTCSGAKVVREKKILEVHVEPGMPHGQKITFKGEADEAPGTKPGDVV 236 (337)
T ss_pred EEEeccccccccceeEeccCCCccccccccccCcccccchhhhhhheeeccccCCCcccceeeeeeeeeecCCCcCccEE
Confidence 99999999999999999999999999888999999999999999999999999999999999999999998888899999
Q ss_pred EEEEEecCCCcEEeCCcEEEEEecCHHHHhCCCEEEEeCCCCCeEEEecCCCceeeCCcEEEEeCCCCc
Q 021275 240 FVLQQKEHPKFKRKGDDLFVEHTLSLTEALCGFQFVITHLDGRQLLIKSQPGEVVKPGKYNWMDVSLNL 308 (315)
Q Consensus 240 v~i~v~~~~~f~r~g~dL~~~~~I~l~~al~G~~~~v~tldG~~~~i~~~~~~v~~pg~~~~i~~~~~~ 308 (315)
+.|..++|+.|.|+++||++..+|+|.+||+|+.+.+.||||+.+.|.++||+|++||.+++|+|+|-+
T Consensus 237 l~i~~k~h~~F~Rrg~dL~~~~~i~l~eal~G~~~~~~~ldGr~l~~~~~pg~vi~~~~~~~v~~~gmp 305 (337)
T KOG0712|consen 237 LLIDQKEHPGFDRRGSDLYRKLTISLVEALCGFQRVWETLDGRLLKLSSKPGEVISPGDTKRVEGEGMP 305 (337)
T ss_pred EEecccccccceecccccceeeecchhhccccceEEEEccCCceEEEecCCCceeChhHEEeecCCCcc
Confidence 999999999999999999999999999999999999999999999999999999999999999999865
No 18
>PRK14281 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=1.1e-68 Score=512.94 Aligned_cols=303 Identities=35% Similarity=0.639 Sum_probs=263.1
Q ss_pred CeeeCCCCCCCHHHHHHHHHHHHHHhCCCCCCCH----HHHHHHHHHHhhcCCCcccccccccccccccccc--CCCC--
Q 021275 1 MRFSESRKNASQDDLKKAYRKAAIKNHPDKGGDP----EKFKELAQAYEVLSDPEKREIYDQYGEDALKEGM--GGGG-- 72 (315)
Q Consensus 1 y~vLgv~~~a~~~~ik~ayr~la~~~hPd~~~~~----~~f~~i~~Ay~~L~d~~~R~~YD~~g~~~~~~g~--~~~~-- 72 (315)
|+||||+++||.+|||+|||+||++||||++++. ++|++|++||++|+||.+|++||+||++++..+. ++++
T Consensus 6 y~iLgv~~~a~~~eikkayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~~r~~yD~~g~~~~~~~~~~~~~~~~ 85 (397)
T PRK14281 6 YEVLGVSRSADKDEIKKAYRKLALKYHPDKNPDNKEAEEHFKEVNEAYEVLSNDDKRRRYDQFGHAGVGSSAASGGGPGY 85 (397)
T ss_pred hhhcCCCCCCCHHHHHHHHHHHHHHHCCCcCCCchHHHHHHHHHHHHHHHhhhhhhhhhhhhccchhhccccccCCCCCC
Confidence 8999999999999999999999999999999742 7999999999999999999999999998775211 0100
Q ss_pred --CCCCCcccc---cCcccCCC-C------------CCCCCCC--CCcCCCcceeeeeeeeeeccccceeeEeeceeeEE
Q 021275 73 --GAHDPFDIF---QSFFGGSP-F------------GGGSSRG--RRQRRGEDVIHPLKVSLEDLYNGTSKKLSLSRNVI 132 (315)
Q Consensus 73 --~~~~~~~~F---~~~Fgg~~-~------------~~~~~~~--~~~~~~~d~~~~~~~~l~e~~~G~~~~~~~~~~~~ 132 (315)
++.++.++| ++|||+++ + +++..+. ..+.++.|+.+.+.|||+|+|.|+++++.+.+.+.
T Consensus 86 ~~~~~~~~d~f~~f~~~Fgg~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~di~~~l~vtLee~~~G~~~~i~~~r~~~ 165 (397)
T PRK14281 86 GGGGGDFNDIFSAFNDMFGGGARRGGGSPFGFEDVFGGGGRRRRASAGIPGTDLKIRLKLTLEEIAKGVEKTLKIKKQVP 165 (397)
T ss_pred CcCCCCHHHHHHHHHHHhCCCcccccccccccccccCCCcccccccCCCCCCCEEEEEEeEHHHHhCCeEEEEEEEeeec
Confidence 112333444 57787421 0 1111111 12246889999999999999999999999999999
Q ss_pred ccCCCCCCcccCCceecCCCcCCceEEEEEecCCcceeEeeeeCCCCCCCceEeCCCCCCCccCCceEEEEeEEEEEEec
Q 021275 133 CTKCKGKGSKSGASMKCSGCQGSGMKVSIRHLGPSMIQQMQHPCNECKGTGETINDKDRCPQCKGEKVIQEKKVLEVIVE 212 (315)
Q Consensus 133 C~~C~G~G~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~~C~~C~G~G~~~~~~~~C~~C~G~g~~~~~~~~~v~Ip 212 (315)
|+.|+|+|.......+|+.|+|+|.+....++++|++++ +.+|+.|.|+|+++. ++|+.|.|.|++...++++|+||
T Consensus 166 C~~C~G~G~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~-~~~C~~C~G~G~~~~--~~C~~C~G~g~v~~~~~~~V~Ip 242 (397)
T PRK14281 166 CKECNGTGSKTGATETCPTCHGSGEVRQASKTMFGQFVN-ITACPTCGGEGRVVK--DRCPACYGEGIKQGEVTVKVTVP 242 (397)
T ss_pred CCCCCCcccCCCCCccCCCCCCCcEEEEEEecccceEEE-EEecCCCcceeeeeC--CCCCCCCCCccEecceEEEEecC
Confidence 999999999877677899999999998888999998875 779999999999987 89999999999999999999999
Q ss_pred ccccCCcEEEEcCCcCCCC-CCCccCEEEEEEEecCCCcEEeCCcEEEEEecCHHHHhCCCEEEEeCCCCCeEEEecCCC
Q 021275 213 KGMQNGQKITFPGEADEAP-DTVTGDIVFVLQQKEHPKFKRKGDDLFVEHTLSLTEALCGFQFVITHLDGRQLLIKSQPG 291 (315)
Q Consensus 213 ~G~~~G~~i~l~g~G~~~~-~~~~GDL~v~i~v~~~~~f~r~g~dL~~~~~I~l~~al~G~~~~v~tldG~~~~i~~~~~ 291 (315)
||+++|++|+|+|+|++.+ ++.+|||||+|++++|+.|+|+|+||+++++|||.+||+|+++.|+||||+ +.|+||++
T Consensus 243 ~G~~~G~~i~~~g~G~~~~~~~~~GDL~i~i~~~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~i~tldg~-i~v~ip~g 321 (397)
T PRK14281 243 AGVQDGNYLTLRGQGNAGPRGGAPGDLIVVIEEKPHELFVRNGDDVIYNLAVSYPDLVLGTKVEVPTLDGA-VKLTIPAG 321 (397)
T ss_pred CCCCCCCEEEEecccccCCCCCCCCcEEEEEEEcCCCCeEEecCCEEEEEEecHHHHhcCCeEEeecCCcc-EEEEeCCc
Confidence 9999999999999999875 568999999999999999999999999999999999999999999999997 88999988
Q ss_pred ceeeCCcEEEEeCCCCcc
Q 021275 292 EVVKPGKYNWMDVSLNLS 309 (315)
Q Consensus 292 ~v~~pg~~~~i~~~~~~~ 309 (315)
++||++++|+|+|.++
T Consensus 322 --~~~G~~~ri~g~G~P~ 337 (397)
T PRK14281 322 --TQPETMLRIPGKGIGH 337 (397)
T ss_pred --cCCCcEEEEcCCCCCC
Confidence 9999999999999864
No 19
>PRK14294 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=1.7e-68 Score=507.32 Aligned_cols=297 Identities=31% Similarity=0.561 Sum_probs=257.8
Q ss_pred CeeeCCCCCCCHHHHHHHHHHHHHHhCCCCCCCH----HHHHHHHHHHhhcCCCccccccccccccccccc-cCCCCCC-
Q 021275 1 MRFSESRKNASQDDLKKAYRKAAIKNHPDKGGDP----EKFKELAQAYEVLSDPEKREIYDQYGEDALKEG-MGGGGGA- 74 (315)
Q Consensus 1 y~vLgv~~~a~~~~ik~ayr~la~~~hPd~~~~~----~~f~~i~~Ay~~L~d~~~R~~YD~~g~~~~~~g-~~~~~~~- 74 (315)
|+||||+++||.+|||+|||+||++||||+++++ ++|++|++||+||+||.+|++||+||++++..+ +++.+++
T Consensus 7 y~~lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~~~~~f~~~~~Ay~vL~d~~~r~~yD~~G~~g~~~~~~~~~~~~~ 86 (366)
T PRK14294 7 YEILGVTRDASEEEIKKSYRKLAMKYHPDRNPGDKEAEELFKEAAEAYEVLSDPKKRGIYDQYGHEGLSGTGFSGFSGFD 86 (366)
T ss_pred HHHhCCCCCCCHHHHHHHHHHHHHHHCCCCCCCchHHHHHHHHHHHHHHHhccHHHHHHHHhhccccccCCCCCCcCccc
Confidence 8999999999999999999999999999999742 799999999999999999999999999877532 1111111
Q ss_pred ---CCCcccccCcccCCCCCCCCCCCCCcCCCcceeeeeeeeeeccccceeeEeeceeeEEccCCCCCCcccCC-ceecC
Q 021275 75 ---HDPFDIFQSFFGGSPFGGGSSRGRRQRRGEDVIHPLKVSLEDLYNGTSKKLSLSRNVICTKCKGKGSKSGA-SMKCS 150 (315)
Q Consensus 75 ---~~~~~~F~~~Fgg~~~~~~~~~~~~~~~~~d~~~~~~~~l~e~~~G~~~~~~~~~~~~C~~C~G~G~~~~~-~~~C~ 150 (315)
.+|.|+|++|||.++.++ .+....+.++.|+.+.+.|||+|+|.|+.+++.+.+.+.|+.|+|+|..... ..+|+
T Consensus 87 ~~~~~~~d~f~~~fg~g~~~~-~~~~~~~~~g~d~~~~l~lslee~~~G~~~~i~~~r~~~C~~C~G~G~~~~~~~~~C~ 165 (366)
T PRK14294 87 DIFSSFGDIFEDFFGFGGGRR-GRSRTAVRAGADLRYDLTLPFLEAAFGTEKEIRIQKLETCEECHGSGCEPGTSPTTCP 165 (366)
T ss_pred cchhhhhhhHHHhhccCCCcC-CcccCCCCCCCCceEEEEeeHHHhcCCeEEEEEeeecccCCCCCCccccCCCCcccCC
Confidence 234578888887211111 1111223578899999999999999999999999999999999999998765 56799
Q ss_pred CCcCCceEEEEEecCCcceeEeeeeCCCCCCCceEeCCCCCCCccCCceEEEEeEEEEEEecccccCCcEEEEcCCcCCC
Q 021275 151 GCQGSGMKVSIRHLGPSMIQQMQHPCNECKGTGETINDKDRCPQCKGEKVIQEKKVLEVIVEKGMQNGQKITFPGEADEA 230 (315)
Q Consensus 151 ~C~G~G~~~~~~~~~~g~~~~~~~~C~~C~G~G~~~~~~~~C~~C~G~g~~~~~~~~~v~Ip~G~~~G~~i~l~g~G~~~ 230 (315)
.|+|+|.++.. . |+++ ++.+|+.|.|+|+++. .+|+.|.|.|++.+.++++|.||||+++|++|+|+|+|++.
T Consensus 166 ~C~G~G~~~~~--~--G~~~-~~~~C~~C~G~G~~~~--~~C~~C~G~g~v~~~~~l~V~Ip~G~~~G~~i~~~g~G~~~ 238 (366)
T PRK14294 166 QCGGSGQVTQS--Q--GFFS-IRTTCPRCRGMGKVIV--SPCKTCHGQGRVRVSKTVQVKIPAGVDTGSRLRLRGEGEAG 238 (366)
T ss_pred CcCCeEEEEEE--e--eeEE-EEeeCCCCCCcCeecC--cCCCCCCCceEeecceeEEEecCCCCcCCcEEEEccCccCC
Confidence 99999977643 2 5554 7899999999999987 89999999999999999999999999999999999999986
Q ss_pred -CCCCccCEEEEEEEecCCCcEEeCCcEEEEEecCHHHHhCCCEEEEeCCCCCeEEEecCCCceeeCCcEEEEeCCCCc
Q 021275 231 -PDTVTGDIVFVLQQKEHPKFKRKGDDLFVEHTLSLTEALCGFQFVITHLDGRQLLIKSQPGEVVKPGKYNWMDVSLNL 308 (315)
Q Consensus 231 -~~~~~GDL~v~i~v~~~~~f~r~g~dL~~~~~I~l~~al~G~~~~v~tldG~~~~i~~~~~~v~~pg~~~~i~~~~~~ 308 (315)
.++.+|||||+|+++||+.|+|+|+||+++++|||.+||+|+++.|+||||+ +.|.||++ ++||++++|+|+|.+
T Consensus 239 ~~~~~~GDl~v~i~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~i~tldG~-~~v~ip~g--~~~g~~iri~G~G~p 314 (366)
T PRK14294 239 VRGGPPGDLYVFLTVEPHEFFERDGNDVHCKVPISFVQAALGAQIEVPTLEGE-RELKIPKG--TQPGDIFRFKGKGIP 314 (366)
T ss_pred CCCCCCCcEEEEEEEccCCcceecCCCEEEEEEeCHHHHhCCCeEEEECCCCc-EEEEECCC--cCCCCEEEECCCCCC
Confidence 4677899999999999999999999999999999999999999999999997 68999998 999999999999976
No 20
>TIGR02349 DnaJ_bact chaperone protein DnaJ. This model represents bacterial forms of DnaJ, part of the DnaK-DnaJ-GrpE chaperone system. The three components typically are encoded by consecutive genes. DnaJ homologs occur in many genomes, typically not near DnaK and GrpE-like genes; most such genes are not included by this family. Eukaryotic (mitochondrial and chloroplast) forms are not included in the scope of this family.
Probab=100.00 E-value=2.7e-68 Score=504.89 Aligned_cols=301 Identities=37% Similarity=0.671 Sum_probs=266.3
Q ss_pred CeeeCCCCCCCHHHHHHHHHHHHHHhCCCCCCCH---HHHHHHHHHHhhcCCCccccccccccccccccccCC-CC----
Q 021275 1 MRFSESRKNASQDDLKKAYRKAAIKNHPDKGGDP---EKFKELAQAYEVLSDPEKREIYDQYGEDALKEGMGG-GG---- 72 (315)
Q Consensus 1 y~vLgv~~~a~~~~ik~ayr~la~~~hPd~~~~~---~~f~~i~~Ay~~L~d~~~R~~YD~~g~~~~~~g~~~-~~---- 72 (315)
|+||||+++||.+|||+|||+||++||||+++++ ++|++|++||++|+|+.+|+.||+||++++..+.+. ++
T Consensus 3 y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~~~~~~~~f~~i~~Ay~vL~d~~~R~~yd~~g~~~~~~~~~~~~~~~~~ 82 (354)
T TIGR02349 3 YEILGVSKDASEEEIKKAYRKLAKKYHPDRNKDKEAEEKFKEINEAYEVLSDPEKRAQYDQFGHAGFNGGGGGGGGGFNG 82 (354)
T ss_pred HHhCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCccHHHHHHHHHHHHHHhhChHHHHhhhhcccccccccCcCCCCCcCC
Confidence 8999999999999999999999999999999743 799999999999999999999999999877532111 11
Q ss_pred ----CCCCCcccccCcccCCCCCCCCCCCCCcCCCcceeeeeeeeeeccccceeeEeeceeeEEccCCCCCCcccCC-ce
Q 021275 73 ----GAHDPFDIFQSFFGGSPFGGGSSRGRRQRRGEDVIHPLKVSLEDLYNGTSKKLSLSRNVICTKCKGKGSKSGA-SM 147 (315)
Q Consensus 73 ----~~~~~~~~F~~~Fgg~~~~~~~~~~~~~~~~~d~~~~~~~~l~e~~~G~~~~~~~~~~~~C~~C~G~G~~~~~-~~ 147 (315)
.+.++.++|++|||++. +++..+...+.++.|+.+.+.+||+|+|.|+++++.+.+.+.|+.|+|+|..... ..
T Consensus 83 ~~~~~~~~~~~~f~~~fg~~~-g~~~~~~~~~~~~~d~~~~l~vsLee~~~G~~~~i~~~r~~~C~~C~G~G~~~~~~~~ 161 (354)
T TIGR02349 83 FDIGFFGDFGDIFGDFFGGGG-GSGRRRRSGPRRGEDLRYDLELTFEEAVFGVEKEIEIPRKESCETCHGTGAKPGTDPK 161 (354)
T ss_pred ccccCcCchhhhHHHHhccCc-ccCccccCCCCCCCCeEEEEEEEHHHHhCCeeEEEEeecCCcCCCCCCCCCCCCCCCc
Confidence 12345678999998431 1111112234578999999999999999999999999999999999999998765 56
Q ss_pred ecCCCcCCceEEEEEecCCcceeEeeeeCCCCCCCceEeCCCCCCCccCCceEEEEeEEEEEEecccccCCcEEEEcCCc
Q 021275 148 KCSGCQGSGMKVSIRHLGPSMIQQMQHPCNECKGTGETINDKDRCPQCKGEKVIQEKKVLEVIVEKGMQNGQKITFPGEA 227 (315)
Q Consensus 148 ~C~~C~G~G~~~~~~~~~~g~~~~~~~~C~~C~G~G~~~~~~~~C~~C~G~g~~~~~~~~~v~Ip~G~~~G~~i~l~g~G 227 (315)
+|+.|+|+|.++..++++||++++ +.+|+.|.|+|+++. .+|+.|.|+|++.+.+.++|.||+|+++|++|+|+|+|
T Consensus 162 ~C~~C~G~G~~~~~~~~~~g~~~~-~~~C~~C~G~G~~~~--~~C~~C~G~g~v~~~~~l~V~Ip~G~~~G~~i~~~g~G 238 (354)
T TIGR02349 162 TCPTCGGTGQVRRQQGTPFGFFQQ-QQTCPTCGGEGKIIK--EPCSTCKGKGRVKERKTITVKIPAGVDTGQRLRVSGKG 238 (354)
T ss_pred cCCCCCCeeEEEEEEeccCCceEE-EEecCCCCCcceecC--CCCCCCCCCcEecccceEEEEECCCCCCCCEEEEecCc
Confidence 799999999999999999999886 779999999999987 89999999999999999999999999999999999999
Q ss_pred CCC-CCCCccCEEEEEEEecCCCcEEeCCcEEEEEecCHHHHhCCCEEEEeCCCCCeEEEecCCCceeeCCcEEEEeCCC
Q 021275 228 DEA-PDTVTGDIVFVLQQKEHPKFKRKGDDLFVEHTLSLTEALCGFQFVITHLDGRQLLIKSQPGEVVKPGKYNWMDVSL 306 (315)
Q Consensus 228 ~~~-~~~~~GDL~v~i~v~~~~~f~r~g~dL~~~~~I~l~~al~G~~~~v~tldG~~~~i~~~~~~v~~pg~~~~i~~~~ 306 (315)
++. .+..+|||||+|++++|+.|+|+|+||++++.|||.|||+|+++.|+|||| .+.|.+|++ ++||++++|+|+|
T Consensus 239 ~~~~~~~~~GDl~v~i~v~~h~~f~r~g~DL~~~~~isl~eAl~G~~~~i~~ldG-~i~v~ip~g--~~~g~~~~i~g~G 315 (354)
T TIGR02349 239 NAGENGGPNGDLYVVIRVKPHKIFERDGNDLYIEVPISFTQAILGGEIEVPTLDG-DVKLKIPAG--TQSGTVFRLKGKG 315 (354)
T ss_pred cCCCCCCCCCCEEEEEEEecCcceEEecCCEEEEEEeCHHHHhCCCeEEEecCCc-eEEEEECCc--ccCCcEEEECCCC
Confidence 986 456789999999999999999999999999999999999999999999999 589999987 9999999999999
Q ss_pred Cc
Q 021275 307 NL 308 (315)
Q Consensus 307 ~~ 308 (315)
.+
T Consensus 316 ~p 317 (354)
T TIGR02349 316 VP 317 (354)
T ss_pred cC
Confidence 76
No 21
>PRK14301 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=2e-68 Score=507.47 Aligned_cols=297 Identities=33% Similarity=0.602 Sum_probs=256.2
Q ss_pred CeeeCCCCCCCHHHHHHHHHHHHHHhCCCCCCCH----HHHHHHHHHHhhcCCCccccccccccccccccccCCCC--C-
Q 021275 1 MRFSESRKNASQDDLKKAYRKAAIKNHPDKGGDP----EKFKELAQAYEVLSDPEKREIYDQYGEDALKEGMGGGG--G- 73 (315)
Q Consensus 1 y~vLgv~~~a~~~~ik~ayr~la~~~hPd~~~~~----~~f~~i~~Ay~~L~d~~~R~~YD~~g~~~~~~g~~~~~--~- 73 (315)
|+||||+++||.+|||+|||+||++||||+++++ ++|++|++||+||+||.+|+.||+||++++..+.+.++ .
T Consensus 7 y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~kr~~yD~~g~~g~~~~~~~~g~~~~ 86 (373)
T PRK14301 7 YEVLGVSRDASEDEIKKAYRKLALQYHPDRNPDNPEAEQKFKEAAEAYEVLRDAEKRARYDRFGHAGVNGNGGFGGFSSA 86 (373)
T ss_pred HHhcCCCCCCCHHHHHHHHHHHHHHhCCCcCCCChHHHHHHHHHHHHHHHhcchhhhhhhhhccccccccCCCCCCcccc
Confidence 8999999999999999999999999999998742 69999999999999999999999999987753211010 1
Q ss_pred ---CCCCcccccCcccCCCCCCCCCCCCCcCCCcceeeeeeeeeeccccceeeEeeceeeEEccCCCCCCcccCC-ceec
Q 021275 74 ---AHDPFDIFQSFFGGSPFGGGSSRGRRQRRGEDVIHPLKVSLEDLYNGTSKKLSLSRNVICTKCKGKGSKSGA-SMKC 149 (315)
Q Consensus 74 ---~~~~~~~F~~~Fgg~~~~~~~~~~~~~~~~~d~~~~~~~~l~e~~~G~~~~~~~~~~~~C~~C~G~G~~~~~-~~~C 149 (315)
+.+|.++|++|||+++. +..+..++.++.|+.+.+.|||+|+|.|+++++.+.+.+.|+.|+|+|..... ..+|
T Consensus 87 ~~~~~~f~d~f~~~fg~g~~--~~~~~~~~~~g~di~~~l~vtLee~~~G~~k~i~~~r~~~C~~C~G~G~~~~~~~~~C 164 (373)
T PRK14301 87 EDIFSHFSDIFGDLFGFSGG--GSRRGPRPQAGSDLRYNLTVSFRQAAKGDEVTLRIPKNVTCDDCGGSGAAPGTSPETC 164 (373)
T ss_pred cccccchHHHHHHHhhccCc--ccccCCCCCCCCCEEEEEeccHHHHhCCceEEEEeeecccCCCCCCcccCCCCCCccc
Confidence 11234667777763211 11112234578999999999999999999999999999999999999998765 4679
Q ss_pred CCCcCCceEEEEEecCCcceeEeeeeCCCCCCCceEeCCCCCCCccCCceEEEEeEEEEEEecccccCCcEEEEcCCcCC
Q 021275 150 SGCQGSGMKVSIRHLGPSMIQQMQHPCNECKGTGETINDKDRCPQCKGEKVIQEKKVLEVIVEKGMQNGQKITFPGEADE 229 (315)
Q Consensus 150 ~~C~G~G~~~~~~~~~~g~~~~~~~~C~~C~G~G~~~~~~~~C~~C~G~g~~~~~~~~~v~Ip~G~~~G~~i~l~g~G~~ 229 (315)
+.|+|+|++... . |+++ .+.+|+.|+|+|+++. .+|+.|.|.|++.+.++++|.||+|+++|++|+|+|+|++
T Consensus 165 ~~C~G~G~v~~~--~--G~~~-~~~~C~~C~G~G~~~~--~~C~~C~G~g~v~~~~~l~V~Ip~G~~~G~~i~~~g~G~~ 237 (373)
T PRK14301 165 RHCGGSGQVRQS--Q--GFFQ-IAVPCPVCRGEGRVIT--HPCPKCKGSGIVQQTRELKVRIPAGVDTGSRLRLRGEGEP 237 (373)
T ss_pred CCccCeeEEEEE--e--eeEE-EEEeCCCCCceeeecC--CCCCCCCCCceeccceEEEEEeCCCCcCCCEEEEeccccC
Confidence 999999986543 2 4544 5899999999999987 8999999999999999999999999999999999999998
Q ss_pred CC-CCCccCEEEEEEEecCCCcEEeCCcEEEEEecCHHHHhCCCEEEEeCCCCCeEEEecCCCceeeCCcEEEEeCCCCc
Q 021275 230 AP-DTVTGDIVFVLQQKEHPKFKRKGDDLFVEHTLSLTEALCGFQFVITHLDGRQLLIKSQPGEVVKPGKYNWMDVSLNL 308 (315)
Q Consensus 230 ~~-~~~~GDL~v~i~v~~~~~f~r~g~dL~~~~~I~l~~al~G~~~~v~tldG~~~~i~~~~~~v~~pg~~~~i~~~~~~ 308 (315)
.+ ++.+|||||+|++++|+.|+|+|+||+++++|||.+||+|+++.|+||||+ +.|.||++ ++||++++|+|+|.+
T Consensus 238 ~~~~~~~GDLiv~i~v~~h~~f~r~G~DL~~~~~Isl~eAl~G~~~~v~tldG~-i~v~ip~g--~~~g~~~ri~g~G~p 314 (373)
T PRK14301 238 GVHGGPPGDLYVVITVEDDKIFQRQGQDLVVTQEISFVQAALGDRIEVPTLDDP-VTLDIPKG--TQSGEVFRLRGKGLP 314 (373)
T ss_pred CCCCCCCcCEEEEEEEEECCCceeecCcEEEEEEecHHHHhCCCeEEEecCCcc-EEEEECCC--cCCCcEEEEcCCCCC
Confidence 74 577899999999999999999999999999999999999999999999998 89999987 999999999999976
Q ss_pred c
Q 021275 309 S 309 (315)
Q Consensus 309 ~ 309 (315)
.
T Consensus 315 ~ 315 (373)
T PRK14301 315 Y 315 (373)
T ss_pred C
Confidence 3
No 22
>PRK14295 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=1e-67 Score=504.90 Aligned_cols=294 Identities=32% Similarity=0.629 Sum_probs=253.4
Q ss_pred CeeeCCCCCCCHHHHHHHHHHHHHHhCCCCCCCH----HHHHHHHHHHhhcCCCcccccccc----ccccccccccC-C-
Q 021275 1 MRFSESRKNASQDDLKKAYRKAAIKNHPDKGGDP----EKFKELAQAYEVLSDPEKREIYDQ----YGEDALKEGMG-G- 70 (315)
Q Consensus 1 y~vLgv~~~a~~~~ik~ayr~la~~~hPd~~~~~----~~f~~i~~Ay~~L~d~~~R~~YD~----~g~~~~~~g~~-~- 70 (315)
|+||||+++||.+|||+|||+||++||||+|+++ ++|++|++||+||+||.+|++||+ ||++++..+.+ +
T Consensus 12 y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~~r~~yD~~~~~~G~~g~~~~~~~~~ 91 (389)
T PRK14295 12 YKVLGVPKDATEAEIKKAYRKLAREYHPDANKGDAKAEERFKEISEAYDVLSDEKKRKEYDEARSLFGNGGFRPGPGGGG 91 (389)
T ss_pred HHhcCCCCCCCHHHHHHHHHHHHHHHCCCcCCCchhHHHHHHHHHHHHHHHCchhhHHHHHHHHhhhcccccccCCCCCC
Confidence 8999999999999999999999999999998742 899999999999999999999999 99887752110 0
Q ss_pred CCCC-CC--------------------CcccccCcccCCCCCCCCCCCCCcCCCcceeeeeeeeeeccccceeeEeecee
Q 021275 71 GGGA-HD--------------------PFDIFQSFFGGSPFGGGSSRGRRQRRGEDVIHPLKVSLEDLYNGTSKKLSLSR 129 (315)
Q Consensus 71 ~~~~-~~--------------------~~~~F~~~Fgg~~~~~~~~~~~~~~~~~d~~~~~~~~l~e~~~G~~~~~~~~~ 129 (315)
++++ .+ |.++|+.||+++ + + .+++.++.|+.+.+.|||+|+|.|+++++.+.+
T Consensus 92 ~~~~~~~~~~~f~~~~~~~~~~~~~~~f~d~f~~~fg~~----~-~-~~~~~~g~di~~~l~lsLee~~~G~~k~i~~~r 165 (389)
T PRK14295 92 GGGFNFDLGDLFGGGAQGGGGAGGGGGLGDVFGGLFNRG----G-R-RTQPRRGADVESEVTLSFTEAIDGATVPLRLTS 165 (389)
T ss_pred CCCCCcccccccccccccccccccccchhhhhcccccCC----C-C-CCCCCCCCCEEEEEEEEHHHHhCCceEEEEeec
Confidence 0000 01 223444444321 1 1 122356889999999999999999999999999
Q ss_pred eEEccCCCCCCcccCC-ceecCCCcCCceEEEEEecCCcceeEeeeeCCCCCCCceEeCCCCCCCccCCceEEEEeEEEE
Q 021275 130 NVICTKCKGKGSKSGA-SMKCSGCQGSGMKVSIRHLGPSMIQQMQHPCNECKGTGETINDKDRCPQCKGEKVIQEKKVLE 208 (315)
Q Consensus 130 ~~~C~~C~G~G~~~~~-~~~C~~C~G~G~~~~~~~~~~g~~~~~~~~C~~C~G~G~~~~~~~~C~~C~G~g~~~~~~~~~ 208 (315)
.+.|++|+|+|..... ..+|+.|+|+|.++... + +++ ++.+|+.|.|+|+++. .+|..|.|.|++.+.++++
T Consensus 166 ~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~--g--~~~-~~~~C~~C~G~G~~~~--~~C~~C~G~g~~~~~~~l~ 238 (389)
T PRK14295 166 QAPCPACSGTGAKNGTTPRVCPTCSGTGQVSRNS--G--GFS-LSEPCPDCKGRGLIAD--DPCLVCKGSGRAKSSRTMQ 238 (389)
T ss_pred cccCCCCcccccCCCCCCcCCCCCCCEeEEEEEe--c--ceE-EEEecCCCcceeEEec--cCCCCCCCCceEeeeeEEE
Confidence 9999999999998765 56799999999876543 3 333 6789999999999987 8999999999999999999
Q ss_pred EEecccccCCcEEEEcCCcCCC-CCCCccCEEEEEEEecCCCcEEeCCcEEEEEecCHHHHhCCCEEEEeCCCCCeEEEe
Q 021275 209 VIVEKGMQNGQKITFPGEADEA-PDTVTGDIVFVLQQKEHPKFKRKGDDLFVEHTLSLTEALCGFQFVITHLDGRQLLIK 287 (315)
Q Consensus 209 v~Ip~G~~~G~~i~l~g~G~~~-~~~~~GDL~v~i~v~~~~~f~r~g~dL~~~~~I~l~~al~G~~~~v~tldG~~~~i~ 287 (315)
|.||+|+++|++|+|+|+|++. .+..+|||||+|+++||+.|+|+|+||+++++|||.+||+|++++|+||||+.+.|+
T Consensus 239 V~Ip~G~~~G~~i~l~g~G~~~~~~~~~GDL~v~i~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~I~tldG~~~~v~ 318 (389)
T PRK14295 239 VRIPAGVSDGQRIRLRGKGAPGERGGPAGDLYVVVHVDPHPVFGRSGDNLTVTVPVTFPEAALGAEVRVPTLGGPPVTVK 318 (389)
T ss_pred EEeCCCCCCCCEEEEcccccCCCCCCCCccEEEEEEEecCCCEEEecCCEEEEEeecHHHHhCCCeEEEECCCCCEEEEE
Confidence 9999999999999999999986 466789999999999999999999999999999999999999999999999889999
Q ss_pred cCCCceeeCCcEEEEeCCCCcc
Q 021275 288 SQPGEVVKPGKYNWMDVSLNLS 309 (315)
Q Consensus 288 ~~~~~v~~pg~~~~i~~~~~~~ 309 (315)
||++ ++||++++|+|+|.+.
T Consensus 319 ip~g--~~~g~~iri~G~G~p~ 338 (389)
T PRK14295 319 LPPG--TPNGRVLRVRGKGAVR 338 (389)
T ss_pred ECCc--cCCCcEEEECCCCcCC
Confidence 9998 9999999999999763
No 23
>PRK14290 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=2e-67 Score=499.88 Aligned_cols=302 Identities=32% Similarity=0.568 Sum_probs=259.7
Q ss_pred CeeeCCCCCCCHHHHHHHHHHHHHHhCCCCCCCH-----HHHHHHHHHHhhcCCCccccccccccccccccccCCC--C-
Q 021275 1 MRFSESRKNASQDDLKKAYRKAAIKNHPDKGGDP-----EKFKELAQAYEVLSDPEKREIYDQYGEDALKEGMGGG--G- 72 (315)
Q Consensus 1 y~vLgv~~~a~~~~ik~ayr~la~~~hPd~~~~~-----~~f~~i~~Ay~~L~d~~~R~~YD~~g~~~~~~g~~~~--~- 72 (315)
|+||||+++||.+|||+|||+||++||||+++++ ++|++|++||++|+||.+|++||+||+.++..+.++. +
T Consensus 6 y~vLgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~~a~~~f~~i~~Ay~~L~d~~~r~~yd~~G~~~~~~~~~~~~~~~ 85 (365)
T PRK14290 6 YKILGVDRNASQEDIKKAFRELAKKWHPDLHPGNKAEAEEKFKEISEAYEVLSDPQKRRQYDQTGTVDFGAGGSNFNWDN 85 (365)
T ss_pred hhhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchhHHHHHHHHHHHHHHHhcChhhhhhhcccCCcccccCCCCccccc
Confidence 8999999999999999999999999999998742 8999999999999999999999999988764211000 0
Q ss_pred --CCCCCcccccCcccCCC----CCCCCCCCCCcCCCcceeeeeeeeeeccccceeeEeeceeeEEccCCCCCCcccCCc
Q 021275 73 --GAHDPFDIFQSFFGGSP----FGGGSSRGRRQRRGEDVIHPLKVSLEDLYNGTSKKLSLSRNVICTKCKGKGSKSGAS 146 (315)
Q Consensus 73 --~~~~~~~~F~~~Fgg~~----~~~~~~~~~~~~~~~d~~~~~~~~l~e~~~G~~~~~~~~~~~~C~~C~G~G~~~~~~ 146 (315)
.+.++.|+|+.|||+.. +++.....+...++.|+...+.|||+|+|.|+++++.+.+.+.|+.|+|+|......
T Consensus 86 ~~~~~~~~d~f~~~fg~~~~~~~~~~~~~~~~~~~~~~di~~~l~lsLee~~~G~~~~i~~~r~~~C~~C~G~g~~~~~~ 165 (365)
T PRK14290 86 FTHFSDINDIFNQIFGGNFGSDFFSGFGNQQSTRNIDLDIYTNLDISLEDAYYGTEKRIKYRRNAMCPDCSGTGAKNGKL 165 (365)
T ss_pred cccccchhHHHHHHhcCccccccccccccccCCCCCCCCEEEEEEecHHHhcCCEEEEEEeeecccCCCCccccCCCCCC
Confidence 12356688998887421 011011111123478999999999999999999999999999999999999987766
Q ss_pred eecCCCcCCceEEEEEecCCcceeEeeeeCCCCCCCceEeCCCCCCCccCCceEEEEeEEEEEEecccccCCcEEEEcCC
Q 021275 147 MKCSGCQGSGMKVSIRHLGPSMIQQMQHPCNECKGTGETINDKDRCPQCKGEKVIQEKKVLEVIVEKGMQNGQKITFPGE 226 (315)
Q Consensus 147 ~~C~~C~G~G~~~~~~~~~~g~~~~~~~~C~~C~G~G~~~~~~~~C~~C~G~g~~~~~~~~~v~Ip~G~~~G~~i~l~g~ 226 (315)
.+|+.|+|+|.+...+.+|+ +.++.+.+|+.|.|.|+++. .+|+.|+|+|++.+.++++|.||||+.+|++|+|+|+
T Consensus 166 ~~C~~C~G~G~~~~~~~~g~-~~~~~~~~C~~C~G~G~~~~--~~C~~C~G~g~v~~~~~~~V~Ip~G~~~G~~i~~~g~ 242 (365)
T PRK14290 166 ITCPTCHGTGQQRIVRGQGF-FRMVTVTTCRTCGGRGRIPE--EKCPRCNGTGTVVVNEDISVKIPKGATDNLRLRVKGK 242 (365)
T ss_pred ccCCCCCCcCEEEEEeccCe-EEEEEEEeCCCCCCceeEcc--CCCCCCCCceeEEEeeEEEEEECCCCCCCcEEEEccc
Confidence 78999999998777665443 22456789999999999976 8999999999999999999999999999999999999
Q ss_pred cCCCCCCCccCEEEEEEEecCCCcEEeCCcEEEEEecCHHHHhCCCEEEEeCCCCCeEEEecCCCceeeCCcEEEEeCCC
Q 021275 227 ADEAPDTVTGDIVFVLQQKEHPKFKRKGDDLFVEHTLSLTEALCGFQFVITHLDGRQLLIKSQPGEVVKPGKYNWMDVSL 306 (315)
Q Consensus 227 G~~~~~~~~GDL~v~i~v~~~~~f~r~g~dL~~~~~I~l~~al~G~~~~v~tldG~~~~i~~~~~~v~~pg~~~~i~~~~ 306 (315)
|+. +++.+|||||+|++++|+.|+|+|+||+++++|||.+||+|+++.|+|++|. +.|.||++ ++||++++|+|+|
T Consensus 243 G~~-~~~~~GDL~v~v~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~I~~~~g~-i~V~Ip~g--~~~g~~iri~g~G 318 (365)
T PRK14290 243 GQS-YGGRTGDLYVVLRVNNDPNIQRINDDLYVDQKINFPQAALGGEIEIKLFREK-YNLKIPEG--TQPGEVLKIKGAG 318 (365)
T ss_pred cCC-CCCCCCCEEEEEEEcCCCCEEEecCCEEEEEEeCHHHHhCCCEEEEEcCCce-EEEEECCc--cCCCcEEEECCCC
Confidence 986 6788999999999999999999999999999999999999999999999985 89999987 9999999999999
Q ss_pred Ccc
Q 021275 307 NLS 309 (315)
Q Consensus 307 ~~~ 309 (315)
.+.
T Consensus 319 ~p~ 321 (365)
T PRK14290 319 MPH 321 (365)
T ss_pred CCC
Confidence 763
No 24
>PRK10767 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=2.7e-67 Score=500.46 Aligned_cols=295 Identities=38% Similarity=0.698 Sum_probs=255.5
Q ss_pred CeeeCCCCCCCHHHHHHHHHHHHHHhCCCCCCCH----HHHHHHHHHHhhcCCCccccccccccccccccccC--CCC--
Q 021275 1 MRFSESRKNASQDDLKKAYRKAAIKNHPDKGGDP----EKFKELAQAYEVLSDPEKREIYDQYGEDALKEGMG--GGG-- 72 (315)
Q Consensus 1 y~vLgv~~~a~~~~ik~ayr~la~~~hPd~~~~~----~~f~~i~~Ay~~L~d~~~R~~YD~~g~~~~~~g~~--~~~-- 72 (315)
|+||||+++||.+|||+|||+||++||||+|++. ++|++|++||++|+||.+|+.||+||++++..+.+ +.+
T Consensus 7 y~iLgv~~~as~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~~L~d~~~r~~yd~~g~~~~~~~~~~~~~~~~ 86 (371)
T PRK10767 7 YEVLGVSRNASEDEIKKAYRKLAMKYHPDRNPGDKEAEEKFKEIKEAYEVLSDPQKRAAYDQYGHAAFEQGGGGGGFGGG 86 (371)
T ss_pred HHhcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCcHHHHHHHHHHHHHHHHhcchhhhhHhhhccccccccCCCCCCCCCc
Confidence 8999999999999999999999999999998742 79999999999999999999999999887753211 101
Q ss_pred -CCCC-CcccccCcccCCCCCCCCCCCCCcCCCcceeeeeeeeeeccccceeeEeeceeeEEccCCCCCCcccCC-ceec
Q 021275 73 -GAHD-PFDIFQSFFGGSPFGGGSSRGRRQRRGEDVIHPLKVSLEDLYNGTSKKLSLSRNVICTKCKGKGSKSGA-SMKC 149 (315)
Q Consensus 73 -~~~~-~~~~F~~~Fgg~~~~~~~~~~~~~~~~~d~~~~~~~~l~e~~~G~~~~~~~~~~~~C~~C~G~G~~~~~-~~~C 149 (315)
++.+ |.++|+.|||++. + ...+++.++.|+.+.+.|||+|+|.|+++++.+.+.+.|+.|+|+|..... ..+|
T Consensus 87 ~~~~~~f~~~f~~~fgg~~---~-~~~~~~~~g~di~~~l~vsLee~~~G~~~~v~~~r~~~C~~C~G~G~~~~~~~~~C 162 (371)
T PRK10767 87 GGFGDIFGDIFGDIFGGGR---G-GGRQRARRGADLRYNMEITLEEAVRGVTKEIRIPTLVTCDTCHGSGAKPGTSPKTC 162 (371)
T ss_pred cccccchhhhhhhhccCCc---c-ccCCCCCCCCCeEEEEEeehHHhhCCeeEEEeeeecccCCCCCCcccCCCCCCccC
Confidence 1112 3356677665321 1 111234578999999999999999999999999999999999999998765 4679
Q ss_pred CCCcCCceEEEEEecCCcceeEeeeeCCCCCCCceEeCCCCCCCccCCceEEEEeEEEEEEecccccCCcEEEEcCCcCC
Q 021275 150 SGCQGSGMKVSIRHLGPSMIQQMQHPCNECKGTGETINDKDRCPQCKGEKVIQEKKVLEVIVEKGMQNGQKITFPGEADE 229 (315)
Q Consensus 150 ~~C~G~G~~~~~~~~~~g~~~~~~~~C~~C~G~G~~~~~~~~C~~C~G~g~~~~~~~~~v~Ip~G~~~G~~i~l~g~G~~ 229 (315)
+.|+|+|+++..+ |+++ ++.+|+.|.|+|+++. .+|+.|.|+|++.+..+++|.||||+++|++|+|+|+|++
T Consensus 163 ~~C~G~G~~~~~~----g~~~-~~~~C~~C~G~G~~~~--~~C~~C~G~g~v~~~~~l~V~Ip~G~~~G~~i~~~g~G~~ 235 (371)
T PRK10767 163 PTCHGAGQVRMQQ----GFFT-VQQTCPTCHGRGKIIK--DPCKKCHGQGRVEKEKTLSVKIPAGVDTGDRIRLSGEGEA 235 (371)
T ss_pred CCCCCeeEEEEee----ceEE-EEEeCCCCCCceeECC--CCCCCCCCCceEeeeeeEEEecCCCCCCCcEEEEecCccC
Confidence 9999999765543 4554 6789999999999986 8999999999999999999999999999999999999998
Q ss_pred C-CCCCccCEEEEEEEecCCCcEEeCCcEEEEEecCHHHHhCCCEEEEeCCCCCeEEEecCCCceeeCCcEEEEeCCCCc
Q 021275 230 A-PDTVTGDIVFVLQQKEHPKFKRKGDDLFVEHTLSLTEALCGFQFVITHLDGRQLLIKSQPGEVVKPGKYNWMDVSLNL 308 (315)
Q Consensus 230 ~-~~~~~GDL~v~i~v~~~~~f~r~g~dL~~~~~I~l~~al~G~~~~v~tldG~~~~i~~~~~~v~~pg~~~~i~~~~~~ 308 (315)
. +++.+|||||+|++++|+.|+|+|+||++++.|+|.+||+|+++.|+|||| .+.|.||++ ++||++++|+|+|.+
T Consensus 236 ~~~~~~~GDL~v~i~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~i~~ldG-~i~v~ip~g--~~~g~~~~i~g~G~p 312 (371)
T PRK10767 236 GERGGPAGDLYVQIHVKEHPIFERDGNDLYCEVPISFTTAALGGEIEVPTLDG-RVKLKIPEG--TQTGKLFRLRGKGVK 312 (371)
T ss_pred CCCCCCCcCEEEEEEEeeCCCEEEecCCEEEEEEeCHHHHhCCCeEEEecCCC-cEEEEeCCC--CCCCCEEEECCCCcC
Confidence 5 466789999999999999999999999999999999999999999999999 489999988 999999999999976
Q ss_pred c
Q 021275 309 S 309 (315)
Q Consensus 309 ~ 309 (315)
.
T Consensus 313 ~ 313 (371)
T PRK10767 313 S 313 (371)
T ss_pred C
Confidence 3
No 25
>PRK14300 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=3e-67 Score=499.51 Aligned_cols=298 Identities=32% Similarity=0.603 Sum_probs=256.3
Q ss_pred CeeeCCCCCCCHHHHHHHHHHHHHHhCCCCCCCH---HHHHHHHHHHhhcCCCcccccccccccccccccc--CCC---C
Q 021275 1 MRFSESRKNASQDDLKKAYRKAAIKNHPDKGGDP---EKFKELAQAYEVLSDPEKREIYDQYGEDALKEGM--GGG---G 72 (315)
Q Consensus 1 y~vLgv~~~a~~~~ik~ayr~la~~~hPd~~~~~---~~f~~i~~Ay~~L~d~~~R~~YD~~g~~~~~~g~--~~~---~ 72 (315)
|+||||+++||.+|||+|||+||++||||+++++ ++|++|++||++|+|+.+|+.||+||++++..+. +++ +
T Consensus 6 y~iLgv~~~as~~eik~ayr~la~~~HPD~~~~~~~~~~f~~i~~Ay~~L~d~~~r~~yD~~G~~~~~~~~~~~~~g~~~ 85 (372)
T PRK14300 6 YQILGVSKTASQADLKKAYLKLAKQYHPDTTDAKDAEKKFKEINAAYDVLKDEQKRAAYDRFGHDAFQNQQSRGGGGNHG 85 (372)
T ss_pred HHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCcCHHHHHHHHHHHHHHhhhHhHhhHHHhccccccccccccCCCCCCC
Confidence 7999999999999999999999999999998743 7999999999999999999999999988765321 111 1
Q ss_pred CC-CCCcccccCcccCCCCCC-CCCCC-CCcCCCcceeeeeeeeeeccccceeeEeeceeeEEccCCCCCCcccCC-cee
Q 021275 73 GA-HDPFDIFQSFFGGSPFGG-GSSRG-RRQRRGEDVIHPLKVSLEDLYNGTSKKLSLSRNVICTKCKGKGSKSGA-SMK 148 (315)
Q Consensus 73 ~~-~~~~~~F~~~Fgg~~~~~-~~~~~-~~~~~~~d~~~~~~~~l~e~~~G~~~~~~~~~~~~C~~C~G~G~~~~~-~~~ 148 (315)
++ .++.++|++||++. |++ +.+.+ ..+.++.|+.+.+.+||+|+|.|+.+++.+.+.+.|+.|+|+|..... ..+
T Consensus 86 ~~~~~~~~~f~~~f~~~-~gg~~~~~~~~~~~~g~di~~~l~~sLee~~~G~~k~i~~~r~~~C~~C~G~g~~~~~~~~~ 164 (372)
T PRK14300 86 GFHPDINDIFGDFFSDF-MGGSRRSRPTSSKVRGSDLKYNLTINLEEAFHGIEKNISFSSEVKCDTCHGSGSEKGETVTT 164 (372)
T ss_pred ccccchhhhHHHHHHhh-cCCCCCCCCCcCCCCCCCeeEEEEEEHHHHhCCceEEEEeeeccccCCCCCcccCCCCCCcc
Confidence 11 13335566555431 111 11111 123468899999999999999999999999999999999999998765 567
Q ss_pred cCCCcCCceEEEEEecCCcceeEeeeeCCCCCCCceEeCCCCCCCccCCceEEEEeEEEEEEecccccCCcEEEEcCCcC
Q 021275 149 CSGCQGSGMKVSIRHLGPSMIQQMQHPCNECKGTGETINDKDRCPQCKGEKVIQEKKVLEVIVEKGMQNGQKITFPGEAD 228 (315)
Q Consensus 149 C~~C~G~G~~~~~~~~~~g~~~~~~~~C~~C~G~G~~~~~~~~C~~C~G~g~~~~~~~~~v~Ip~G~~~G~~i~l~g~G~ 228 (315)
|+.|+|+|.++.. .|+++ ++.+|+.|.|+|+++. .+|+.|+|+|++.+.++++|.||+|+++|++|+|+|+|+
T Consensus 165 C~~C~G~G~~~~~----~g~~~-~~~~C~~C~G~G~~~~--~~C~~C~G~g~v~~~~~~~V~Ip~G~~~G~~i~l~g~G~ 237 (372)
T PRK14300 165 CDACSGVGATRMQ----QGFFT-IEQACHKCQGNGQIIK--NPCKKCHGMGRYHKQRNLSVNIPAGVENGTRIRHTGEGE 237 (372)
T ss_pred CCCccCeEEEEEe----eceEE-EEEeCCCCCccceEeC--CCCCCCCCceEEEeeEEEEEEECCCCCCCcEEEEecccc
Confidence 9999999986642 25665 7889999999999987 899999999999999999999999999999999999999
Q ss_pred CC-CCCCccCEEEEEEEecCCCcEEeCCcEEEEEecCHHHHhCCCEEEEeCCCCCeEEEecCCCceeeCCcEEEEeCCCC
Q 021275 229 EA-PDTVTGDIVFVLQQKEHPKFKRKGDDLFVEHTLSLTEALCGFQFVITHLDGRQLLIKSQPGEVVKPGKYNWMDVSLN 307 (315)
Q Consensus 229 ~~-~~~~~GDL~v~i~v~~~~~f~r~g~dL~~~~~I~l~~al~G~~~~v~tldG~~~~i~~~~~~v~~pg~~~~i~~~~~ 307 (315)
+. +++.+|||||+|++++|+.|+|+|+||+++++|+|.+||+|+++.|+||||+.+.|+||++ ++||++++|+|+|-
T Consensus 238 ~~~~~~~~GDL~v~i~v~~h~~f~R~G~Dl~~~~~Isl~~Al~G~~~~i~~ldg~~i~v~Ip~g--~~~g~~iri~g~G~ 315 (372)
T PRK14300 238 AGIRGGNSGDLYVDIAIKPHDIYKVDGANLHCKLPISFVNAALGGEIEVPVIEGGKVNLTIPAG--TQNGDQLRLRSKGM 315 (372)
T ss_pred CCCCCCCCCCEEEEEEECCCCCeEEecCCEEEEEecCHHHHhCCCEEEEecCCCCEEEEEECCc--cCCCcEEEECCCCC
Confidence 86 5678899999999999999999999999999999999999999999999998899999998 99999999999996
Q ss_pred c
Q 021275 308 L 308 (315)
Q Consensus 308 ~ 308 (315)
+
T Consensus 316 p 316 (372)
T PRK14300 316 S 316 (372)
T ss_pred C
Confidence 5
No 26
>PRK14291 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=5.6e-67 Score=499.28 Aligned_cols=299 Identities=34% Similarity=0.659 Sum_probs=255.0
Q ss_pred CeeeCCCCCCCHHHHHHHHHHHHHHhCCCCCCCH---HHHHHHHHHHhhcCCCccccccccccccccccccC---CCC--
Q 021275 1 MRFSESRKNASQDDLKKAYRKAAIKNHPDKGGDP---EKFKELAQAYEVLSDPEKREIYDQYGEDALKEGMG---GGG-- 72 (315)
Q Consensus 1 y~vLgv~~~a~~~~ik~ayr~la~~~hPd~~~~~---~~f~~i~~Ay~~L~d~~~R~~YD~~g~~~~~~g~~---~~~-- 72 (315)
|+||||+++||.+|||+|||+||++||||+|+++ ++|++|++||++|+||.+|++||+||++++..+.. +..
T Consensus 6 Y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~~~~~~~~f~~i~~Ay~vLsd~~kR~~YD~~g~~~~~~~~~~~~~~~~~ 85 (382)
T PRK14291 6 YEILGVSRNATQEEIKKAYRRLARKYHPDFNKNPEAEEKFKEINEAYQVLSDPEKRKLYDQFGHAAFSGSGQQQQGQEGF 85 (382)
T ss_pred HHhhCCCCCCCHHHHHHHHHHHHHHHCCCCCCCccHHHHHHHHHHHHHHhcCHHHHHHHhhhcccccccccCcccccccc
Confidence 8999999999999999999999999999999753 89999999999999999999999999887642211 000
Q ss_pred ---CCCCCcccccCcc---c-CCCCCCC----CC--CCCCcCCCcceeeeeeeeeeccccceeeEeeceeeEEccCCCCC
Q 021275 73 ---GAHDPFDIFQSFF---G-GSPFGGG----SS--RGRRQRRGEDVIHPLKVSLEDLYNGTSKKLSLSRNVICTKCKGK 139 (315)
Q Consensus 73 ---~~~~~~~~F~~~F---g-g~~~~~~----~~--~~~~~~~~~d~~~~~~~~l~e~~~G~~~~~~~~~~~~C~~C~G~ 139 (315)
.+.++.++|.+|| | ++.|++. .+ ....+.++.|+.+.+.|||+|+|.|+.+++.+.+.+.|+.|+|+
T Consensus 86 ~~~~~~~~~d~f~~~f~~fg~~~~fg~~~~~~~~~~~~~~~~~g~di~~~l~vsLee~~~G~~~~i~~~r~~~C~~C~G~ 165 (382)
T PRK14291 86 SDFGGGNIEDILEDVFDIFGFGDIFGRRRATRERRKTYQRPVKGEDIYQTVEISLEEAYTGTTVSLEVPRYVPCEACGGT 165 (382)
T ss_pred ccccCCCHHHHHHHHHHhccccccccccccccccccccccccCCCCEEEEEEEEHHHhhCCEEEEEEEeeeccCCCCccc
Confidence 1123446666663 2 1112210 11 01223478899999999999999999999999999999999999
Q ss_pred CcccCC-ceecCCCcCCceEEEEEecCCcceeEeeeeCCCCCCCceEeCCCCCCCccCCceEEEEeEEEEEEecccccCC
Q 021275 140 GSKSGA-SMKCSGCQGSGMKVSIRHLGPSMIQQMQHPCNECKGTGETINDKDRCPQCKGEKVIQEKKVLEVIVEKGMQNG 218 (315)
Q Consensus 140 G~~~~~-~~~C~~C~G~G~~~~~~~~~~g~~~~~~~~C~~C~G~G~~~~~~~~C~~C~G~g~~~~~~~~~v~Ip~G~~~G 218 (315)
|..... ..+|+.|+|+|.++.. . + +++++.+|+.|.|+|. +. .+|+.|+|.|++.+.++++|.||||+.+|
T Consensus 166 G~~~~~~~~~C~~C~G~G~~~~~--~--g-~~~~~~~C~~C~G~G~-~~--~~C~~C~G~g~v~~~~~l~V~Ip~G~~~G 237 (382)
T PRK14291 166 GYDPGSGEKVCPTCGGSGEIYQR--G--G-FFRISQTCPTCGGEGV-LR--EPCSKCNGRGLVIKKETIKVRIPPGVDNG 237 (382)
T ss_pred cCCCCCCCccCCCCCCceEEEEe--c--c-eEEEEecCCCCCCceE-Ec--cCCCCCCCCceEEeeeEEEEEeCCCCCCC
Confidence 998765 5679999999976654 1 2 3457899999999995 44 79999999999999999999999999999
Q ss_pred cEEEEcCCcCCC-CCCCccCEEEEEEEecCCCcEEeCCcEEEEEecCHHHHhCCCEEEEeCCCCCeEEEecCCCceeeCC
Q 021275 219 QKITFPGEADEA-PDTVTGDIVFVLQQKEHPKFKRKGDDLFVEHTLSLTEALCGFQFVITHLDGRQLLIKSQPGEVVKPG 297 (315)
Q Consensus 219 ~~i~l~g~G~~~-~~~~~GDL~v~i~v~~~~~f~r~g~dL~~~~~I~l~~al~G~~~~v~tldG~~~~i~~~~~~v~~pg 297 (315)
++|+|+|+|++. +++.+|||||+|+++||+.|+|+|+||++++.|+|.+||+|+++.|+||||+.+.|.||++ ++||
T Consensus 238 ~~i~~~g~G~~~~~g~~~GDL~v~i~~~~h~~F~r~G~DL~~~~~Isl~eAl~G~~~~i~~ldG~~l~V~Ip~g--~~~G 315 (382)
T PRK14291 238 SKLRVPGKGHAGRFGGPPGDLYIIVKVKPHPLFERRGDNLYLDVNITVAEAVLGTELEVPLLDGKKEKVKIPPG--TKEG 315 (382)
T ss_pred CEEEEecCcCCCCCCCCCccEEEEEEEccCCCeeeecCCeEEEEEeeHHHHhCCCEEEEecCCCCEEEEEECCc--cCCC
Confidence 999999999986 4788999999999999999999999999999999999999999999999999899999998 9999
Q ss_pred cEEEEeCCCCcc
Q 021275 298 KYNWMDVSLNLS 309 (315)
Q Consensus 298 ~~~~i~~~~~~~ 309 (315)
++++|+|+|.+.
T Consensus 316 ~~i~i~G~G~p~ 327 (382)
T PRK14291 316 DKIRVPGKGMPR 327 (382)
T ss_pred CEEEECCCCCCC
Confidence 999999999763
No 27
>PRK14293 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=2.1e-66 Score=494.43 Aligned_cols=303 Identities=32% Similarity=0.586 Sum_probs=264.8
Q ss_pred CeeeCCCCCCCHHHHHHHHHHHHHHhCCCCCCCH---HHHHHHHHHHhhcCCCcccccccccccccccccc--CCCCCCC
Q 021275 1 MRFSESRKNASQDDLKKAYRKAAIKNHPDKGGDP---EKFKELAQAYEVLSDPEKREIYDQYGEDALKEGM--GGGGGAH 75 (315)
Q Consensus 1 y~vLgv~~~a~~~~ik~ayr~la~~~hPd~~~~~---~~f~~i~~Ay~~L~d~~~R~~YD~~g~~~~~~g~--~~~~~~~ 75 (315)
|+||||+++||.+|||+|||+||++||||+++++ ++|++|++||++|+||.+|++||+||++++..+. ++.++..
T Consensus 6 y~vLgv~~~a~~~eik~ayr~la~~~HPD~~~~~~a~~~f~~i~~Ay~vL~~~~~R~~yd~~g~~g~~~~~~~~~~~~~~ 85 (374)
T PRK14293 6 YEILGVSRDADKDELKRAYRRLARKYHPDVNKEPGAEDRFKEINRAYEVLSDPETRARYDQFGEAGVSGAAGFPDMGDMG 85 (374)
T ss_pred hhhcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCcCHHHHHHHHHHHHHHHhchHHHHHHhhccccccccCCCcCCccccc
Confidence 8999999999999999999999999999998754 8999999999999999999999999988765321 1111122
Q ss_pred CCcccccCcccCCCC-CC-C-CCCCCCcCCCcceeeeeeeeeeccccceeeEeeceeeEEccCCCCCCcccCC-ceecCC
Q 021275 76 DPFDIFQSFFGGSPF-GG-G-SSRGRRQRRGEDVIHPLKVSLEDLYNGTSKKLSLSRNVICTKCKGKGSKSGA-SMKCSG 151 (315)
Q Consensus 76 ~~~~~F~~~Fgg~~~-~~-~-~~~~~~~~~~~d~~~~~~~~l~e~~~G~~~~~~~~~~~~C~~C~G~G~~~~~-~~~C~~ 151 (315)
++.++|++||++.+. ++ + ..+.+.+.++.|+.+.+.+||+|+|.|+.+++.+.+.+.|+.|+|+|..... ..+|+.
T Consensus 86 ~~~d~f~~~fg~~~~~~~~~~~~~~~~~~kg~di~~~l~vsLee~~~G~~k~i~~~r~~~C~~C~G~G~~~~~~~~~C~~ 165 (374)
T PRK14293 86 GFADIFETFFSGFGGAGGQGGRRRRRGPQRGDDLRYDLKLDFREAIFGGEKEIRIPHLETCETCRGSGAKPGTGPTTCST 165 (374)
T ss_pred chHHHHHHHhcccCCCCCCCccccccCccCCCCeEEEEEeeHHHHhCCceEEEEeeccccCCCCCCcCCCCCCCCeeCCC
Confidence 345788888864111 11 0 1111234568899999999999999999999999999999999999998765 567999
Q ss_pred CcCCceEEEEEecCCcceeEeeeeCCCCCCCceEeCCCCCCCccCCceEEEEeEEEEEEecccccCCcEEEEcCCcCCC-
Q 021275 152 CQGSGMKVSIRHLGPSMIQQMQHPCNECKGTGETINDKDRCPQCKGEKVIQEKKVLEVIVEKGMQNGQKITFPGEADEA- 230 (315)
Q Consensus 152 C~G~G~~~~~~~~~~g~~~~~~~~C~~C~G~G~~~~~~~~C~~C~G~g~~~~~~~~~v~Ip~G~~~G~~i~l~g~G~~~- 230 (315)
|+|+|++...++++||++++ +.+|+.|.|+|+++. .+|+.|.|.|++.+.++++|.||||+++|++|+|+|+|++.
T Consensus 166 C~G~G~~~~~~~~~~g~~~~-~~~C~~C~G~G~~~~--~~C~~C~G~g~v~~~~~~~V~IppG~~~G~~i~l~g~G~~~~ 242 (374)
T PRK14293 166 CGGAGQVRRATRTPFGSFTQ-VSECPTCNGTGQVIE--DPCDACGGQGVKQVTKKLKINIPAGVDTGTRLRVSGEGDAGL 242 (374)
T ss_pred CCCcceEEEEEecCcceEEE-EeeCCCCCcceeEec--cCCCCCCCCcccccceEEEEEeCCCCCCCCEEEEccCccCCC
Confidence 99999999999999998875 689999999999987 89999999999999999999999999999999999999986
Q ss_pred CCCCccCEEEEEEEecCCCcEEeCCcEEEEEecCHHHHhCCCEEEEeCCCCCeEEEecCCCceeeCCcEEEEeCCCCcc
Q 021275 231 PDTVTGDIVFVLQQKEHPKFKRKGDDLFVEHTLSLTEALCGFQFVITHLDGRQLLIKSQPGEVVKPGKYNWMDVSLNLS 309 (315)
Q Consensus 231 ~~~~~GDL~v~i~v~~~~~f~r~g~dL~~~~~I~l~~al~G~~~~v~tldG~~~~i~~~~~~v~~pg~~~~i~~~~~~~ 309 (315)
++..+|||||+|++++|+.|+|+|+||+++++|||.+||+|+++.|+||||+ +.|.||++ ++||++++|+|+|.+.
T Consensus 243 ~~~~~GDL~v~v~v~~~~~f~r~g~DL~~~~~Isl~eAl~G~~~~i~~ldG~-~~i~ip~~--~~~g~~~ri~g~G~p~ 318 (374)
T PRK14293 243 RGGPPGDLYVYLFVKNDPEFRRDGINILSEIKISYLQAILGDTLEVDTVDGP-VELTIPAG--TQPNTVLTLENKGVPR 318 (374)
T ss_pred CCCCCcCEEEEEEEeCCCccChhhhceEEEeccCHHHHhCCCEEEecCCCCC-EEEEeCCC--CCCCCEEEECCCCCCC
Confidence 4567899999999999999999999999999999999999999999999997 78999987 9999999999999874
No 28
>PRK14292 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=7.3e-66 Score=490.65 Aligned_cols=301 Identities=32% Similarity=0.640 Sum_probs=263.0
Q ss_pred CeeeCCCCCCCHHHHHHHHHHHHHHhCCCCCCCH---HHHHHHHHHHhhcCCCccccccccccccccccccCC---CCCC
Q 021275 1 MRFSESRKNASQDDLKKAYRKAAIKNHPDKGGDP---EKFKELAQAYEVLSDPEKREIYDQYGEDALKEGMGG---GGGA 74 (315)
Q Consensus 1 y~vLgv~~~a~~~~ik~ayr~la~~~hPd~~~~~---~~f~~i~~Ay~~L~d~~~R~~YD~~g~~~~~~g~~~---~~~~ 74 (315)
|+||||+++||.+|||+|||+||++||||+++++ ++|++|++||++|+||.+|++||+||+++.....++ ++.+
T Consensus 5 y~~Lgv~~~a~~~~ik~ayr~l~~~~hpD~~~~~~a~~~~~~i~~Ay~vL~d~~~r~~yd~~G~~~~~~~~~~~~~~~~~ 84 (371)
T PRK14292 5 YELLGVSRTASADEIKSAYRKLALKYHPDRNKEKGAAEKFAQINEAYAVLSDAEKRAHYDRFGTAPGAGMPGGDPFGGMG 84 (371)
T ss_pred HHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCCChhHHHHHHHHHHHHHHhcchhhhhhHhhcCCcccccccCCcccCccC
Confidence 7999999999999999999999999999999754 899999999999999999999999998763211000 0111
Q ss_pred CCCcccccCcccCCCCCCCCCCCCCcCCCcceeeeeeeeeeccccceeeEeeceeeEEccCCCCCCcccCC--ceecCCC
Q 021275 75 HDPFDIFQSFFGGSPFGGGSSRGRRQRRGEDVIHPLKVSLEDLYNGTSKKLSLSRNVICTKCKGKGSKSGA--SMKCSGC 152 (315)
Q Consensus 75 ~~~~~~F~~~Fgg~~~~~~~~~~~~~~~~~d~~~~~~~~l~e~~~G~~~~~~~~~~~~C~~C~G~G~~~~~--~~~C~~C 152 (315)
.++.++|+.|||+++++++ ...+++.++.|+...+.+||+|++.|+++++.+.+.+.|+.|+|+|..... ..+|+.|
T Consensus 85 ~d~~d~f~~~fg~~~~~~~-~~~~~~~~g~d~~~~l~~sLee~~~G~~~~v~~~r~~~C~~C~G~G~~~~~~~~~~C~~C 163 (371)
T PRK14292 85 FDPMDIFEQLFGGAGFGGG-RGRRGPARGDDLETEARITLEQARAGEEVEVEVDRLTECEHCHGSRTEPGGKPPKTCPTC 163 (371)
T ss_pred CChHHHHHHhhCCCCcCCC-CCcccccCCCCeEEEEeccHHHHcCCeEEEEEEEeeecCCCCcccccCCCCCCCccCCCC
Confidence 3456889999985422211 111234578899999999999999999999999999999999999997654 5679999
Q ss_pred cCCceEEEEEecCCcceeEeeeeCCCCCCCceEeCCCCCCCccCCceEEEEeEEEEEEecccccCCcEEEEcCCcCCCCC
Q 021275 153 QGSGMKVSIRHLGPSMIQQMQHPCNECKGTGETINDKDRCPQCKGEKVIQEKKVLEVIVEKGMQNGQKITFPGEADEAPD 232 (315)
Q Consensus 153 ~G~G~~~~~~~~~~g~~~~~~~~C~~C~G~G~~~~~~~~C~~C~G~g~~~~~~~~~v~Ip~G~~~G~~i~l~g~G~~~~~ 232 (315)
+|+|.+...+++.+|+++. +.+|+.|+|.|+.+. .+|+.|.|+|++...++++|.||+|+++|++|+|+|+|++.++
T Consensus 164 ~G~G~~~~~~~~~~g~~~~-~~~C~~C~G~G~~~~--~~C~~C~G~g~v~~~~~~~V~Ip~G~~~G~~i~~~G~G~~~~~ 240 (371)
T PRK14292 164 RGAGAVRAQARTIFGVVET-QQPCPTCRGEGQIIT--DPCTVCRGRGRTLKAETVKVKLPRGIDEGYRIRVAGMGNEGPG 240 (371)
T ss_pred CCccEEEEEEeccCceEEE-eeecCCCcccceecC--CCCCCCCCceEEeecceEEEEECCCCCCCcEEEEecCcCCCCC
Confidence 9999998888888888865 789999999999987 9999999999999999999999999999999999999998766
Q ss_pred CCccCEEEEEEEecCCCcEEeCCcEEEEEecCHHHHhCCCEEEEeCCCCCeEEEecCCCceeeCCcEEEEeCCCCcc
Q 021275 233 TVTGDIVFVLQQKEHPKFKRKGDDLFVEHTLSLTEALCGFQFVITHLDGRQLLIKSQPGEVVKPGKYNWMDVSLNLS 309 (315)
Q Consensus 233 ~~~GDL~v~i~v~~~~~f~r~g~dL~~~~~I~l~~al~G~~~~v~tldG~~~~i~~~~~~v~~pg~~~~i~~~~~~~ 309 (315)
+. |||||+|++++|+.|+|+|+||+++++|+|.+||+|+++.|+||||+. .|.||++ ++||++++|+|+|.+.
T Consensus 241 ~~-GDL~v~i~v~~h~~f~r~g~dL~~~~~isl~eAl~G~~~~i~tldG~~-~v~ip~g--~~~g~~~~i~g~G~p~ 313 (371)
T PRK14292 241 GN-GDLYVHIEMEPHPELRREQEHLIYEARIGFAKAALGGQITVPTLDGPQ-VIEVKPG--TQHGDLHRLRGQGMPR 313 (371)
T ss_pred CC-CCEEEEEEEecCCccccchhceeEEeccCHHHHhCCCeEEEECCCCCE-EEecCCC--cCCCcEEEECCCCCCC
Confidence 55 999999999999999999999999999999999999999999999984 7999988 9999999999998763
No 29
>PRK14283 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=1.5e-65 Score=489.07 Aligned_cols=296 Identities=30% Similarity=0.574 Sum_probs=257.6
Q ss_pred CeeeCCCCCCCHHHHHHHHHHHHHHhCCCCCCCH---HHHHHHHHHHhhcCCCccccccccccccccccccC-C---CCC
Q 021275 1 MRFSESRKNASQDDLKKAYRKAAIKNHPDKGGDP---EKFKELAQAYEVLSDPEKREIYDQYGEDALKEGMG-G---GGG 73 (315)
Q Consensus 1 y~vLgv~~~a~~~~ik~ayr~la~~~hPd~~~~~---~~f~~i~~Ay~~L~d~~~R~~YD~~g~~~~~~g~~-~---~~~ 73 (315)
|+||||+++||.+|||+|||+||++||||+|+++ ++|++|++||++|+||.+|++||+||++++..... + ...
T Consensus 8 y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~a~~~f~~i~~Ay~~Lsd~~kR~~YD~~G~~g~~~~~~~~~~~~~~ 87 (378)
T PRK14283 8 YEVLGVDRNADKKEIKKAYRKLARKYHPDVSEEEGAEEKFKEISEAYAVLSDDEKRQRYDQFGHAGMDGFSQEDIFNNIN 87 (378)
T ss_pred HHhhCCCCCCCHHHHHHHHHHHHHHHCcCCCCCccHHHHHHHHHHHHHHhchhHHHHHHhhhcccccccccccccccccC
Confidence 8999999999999999999999999999998743 89999999999999999999999999887642100 0 000
Q ss_pred C----C----CCcccccCc-ccCCCCCCCCCCCCCcCCCcceeeeeeeeeeccccceeeEeeceeeEEccCCCCCCcccC
Q 021275 74 A----H----DPFDIFQSF-FGGSPFGGGSSRGRRQRRGEDVIHPLKVSLEDLYNGTSKKLSLSRNVICTKCKGKGSKSG 144 (315)
Q Consensus 74 ~----~----~~~~~F~~~-Fgg~~~~~~~~~~~~~~~~~d~~~~~~~~l~e~~~G~~~~~~~~~~~~C~~C~G~G~~~~ 144 (315)
. . ++.++|+.| |++ ++ ...+.++.|+.+.+.+||+|+|.|+.+++.+.+.+.|++|+|+|....
T Consensus 88 ~~~~~~~~~~~~~~~f~~~~fgg-----~~--~~~~~kg~di~~~l~vsLed~~~G~~~~i~~~r~~~C~~C~G~G~~~~ 160 (378)
T PRK14283 88 FEDIFQGFGFGIGNIFDMFGFGG-----GS--RHGPQRGADIYTEVEITLEEAASGVEKDIKVRHTKKCPVCNGSRAEPG 160 (378)
T ss_pred ccccccccccchhhhccccccCC-----CC--CCCccCCCCeEEEeeeeHHHHhCCcceEEEeeeeccCCCCCccccCCC
Confidence 0 0 122334443 331 11 122356889999999999999999999999999999999999999765
Q ss_pred C-ceecCCCcCCceEEEEEecCCcceeEeeeeCCCCCCCceEeCCCCCCCccCCceEEEEeEEEEEEecccccCCcEEEE
Q 021275 145 A-SMKCSGCQGSGMKVSIRHLGPSMIQQMQHPCNECKGTGETINDKDRCPQCKGEKVIQEKKVLEVIVEKGMQNGQKITF 223 (315)
Q Consensus 145 ~-~~~C~~C~G~G~~~~~~~~~~g~~~~~~~~C~~C~G~G~~~~~~~~C~~C~G~g~~~~~~~~~v~Ip~G~~~G~~i~l 223 (315)
. ..+|+.|+|+|++...+++++|+++. +.+|+.|.|+|+.+. .+|..|.|+|.+.+.++++|.||||+++|++|+|
T Consensus 161 ~~~~~C~~C~G~G~~~~~~~~~~g~~~~-~~~C~~C~G~G~~~~--~~C~~C~G~g~v~~~~~l~V~IppG~~~G~~i~l 237 (378)
T PRK14283 161 SEVKTCPTCGGTGQVKQVRNTILGQMMN-VTTCPDCQGEGKIVE--KPCSNCHGKGVVRETKTISVKIPAGVETGSRLRV 237 (378)
T ss_pred CCCccCCCcCCccEEEEEEeccCceEEE-EEECCCCCccceecC--CCCCCCCCceeeccceeEEEEECCCCCCCcEEEE
Confidence 5 56799999999999999999998764 579999999999976 8999999999999999999999999999999999
Q ss_pred cCCcCCCC-CCCccCEEEEEEEecCCCcEEeCCcEEEEEecCHHHHhCCCEEEEeCCCCCeEEEecCCCceeeCCcEEEE
Q 021275 224 PGEADEAP-DTVTGDIVFVLQQKEHPKFKRKGDDLFVEHTLSLTEALCGFQFVITHLDGRQLLIKSQPGEVVKPGKYNWM 302 (315)
Q Consensus 224 ~g~G~~~~-~~~~GDL~v~i~v~~~~~f~r~g~dL~~~~~I~l~~al~G~~~~v~tldG~~~~i~~~~~~v~~pg~~~~i 302 (315)
+|+|++.+ ++.+|||||+|+|++|+.|+|+|+||+++++|||.+|++|+++.|+|||| .+.|.||++ ++||++++|
T Consensus 238 ~g~G~~~~~~~~~GDLiv~i~v~~~~~f~r~G~DL~~~~~Isl~eAl~G~~~~i~tldG-~i~v~ip~g--~~~g~~~ri 314 (378)
T PRK14283 238 SGEGEMGDRGGEPGDLYVVIKVKPHKIFRREGANLYYEKPISFVQAALGDTVDVPTIDG-PVELKIPAG--TQSGTTFRL 314 (378)
T ss_pred eccccCCCCCCCCccEEEEEEEEcCCCEEEecCCEEEEEecCHHHHhcCCeEEEEcCCc-eEEEEeCCC--CCCCCEEEE
Confidence 99999864 57789999999999999999999999999999999999999999999999 589999987 999999999
Q ss_pred eCCCCcc
Q 021275 303 DVSLNLS 309 (315)
Q Consensus 303 ~~~~~~~ 309 (315)
+|+|.+.
T Consensus 315 ~g~G~p~ 321 (378)
T PRK14283 315 KGHGMPS 321 (378)
T ss_pred CCCCCCC
Confidence 9999763
No 30
>PRK14289 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=1.5e-65 Score=490.64 Aligned_cols=303 Identities=35% Similarity=0.653 Sum_probs=260.7
Q ss_pred CeeeCCCCCCCHHHHHHHHHHHHHHhCCCCCCCH----HHHHHHHHHHhhcCCCccccccccccccccccccCCC---CC
Q 021275 1 MRFSESRKNASQDDLKKAYRKAAIKNHPDKGGDP----EKFKELAQAYEVLSDPEKREIYDQYGEDALKEGMGGG---GG 73 (315)
Q Consensus 1 y~vLgv~~~a~~~~ik~ayr~la~~~hPd~~~~~----~~f~~i~~Ay~~L~d~~~R~~YD~~g~~~~~~g~~~~---~~ 73 (315)
|++|||+++||.+|||+|||+||++||||+|+++ ++|++|++||++|+||.+|++||+||+++++.+.+.+ +.
T Consensus 8 y~~Lgv~~~a~~~eik~ayr~la~~~HpD~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~yD~~G~~~~~~~~~~~~~~~~ 87 (386)
T PRK14289 8 YEVLGVSKTATVDEIKKAYRKKAIQYHPDKNPGDKEAEEKFKEAAEAYDVLSDPDKRSRYDQFGHAGVGGAAGGGGFSGE 87 (386)
T ss_pred HHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCChHHHHHHHHHHHHHHHhcCHHHHHHHHHhcccccccCCCCCCCCCC
Confidence 8999999999999999999999999999999743 7999999999999999999999999988765321110 00
Q ss_pred CCCCcccc---cCcccCC--CCC-----CCCCCCCCcCCCcceeeeeeeeeeccccceeeEeeceeeEEccCCCCCCccc
Q 021275 74 AHDPFDIF---QSFFGGS--PFG-----GGSSRGRRQRRGEDVIHPLKVSLEDLYNGTSKKLSLSRNVICTKCKGKGSKS 143 (315)
Q Consensus 74 ~~~~~~~F---~~~Fgg~--~~~-----~~~~~~~~~~~~~d~~~~~~~~l~e~~~G~~~~~~~~~~~~C~~C~G~G~~~ 143 (315)
..++.++| +++|++. +++ ++......+.++.|+.+.+.|||+|+|.|+++++.+.+.+.|+.|+|+|...
T Consensus 88 ~~~~~~~f~~f~~~fg~~~gg~~~~~~~~~~~~~~~~~~g~di~~~l~vsLee~~~G~~~~i~~~r~~~C~~C~G~G~~~ 167 (386)
T PRK14289 88 GMSMEDIFSMFGDIFGGHGGGFGGFGGFGGGGSQQRVFRGSDLRVKVKLNLKEISTGVEKKFKVKKYVPCSHCHGTGAEG 167 (386)
T ss_pred CcChhhhhHHhhhhhcccccCcccccccccccccCCCCCCCCeEEEEEEEHHHhhCCeEEEEEEEeecccCCCCCCCCCC
Confidence 12233333 2334421 100 0011112235688999999999999999999999999999999999999976
Q ss_pred CC-ceecCCCcCCceEEEEEecCCcceeEeeeeCCCCCCCceEeCCCCCCCccCCceEEEEeEEEEEEecccccCCcEEE
Q 021275 144 GA-SMKCSGCQGSGMKVSIRHLGPSMIQQMQHPCNECKGTGETINDKDRCPQCKGEKVIQEKKVLEVIVEKGMQNGQKIT 222 (315)
Q Consensus 144 ~~-~~~C~~C~G~G~~~~~~~~~~g~~~~~~~~C~~C~G~G~~~~~~~~C~~C~G~g~~~~~~~~~v~Ip~G~~~G~~i~ 222 (315)
.. ..+|+.|+|+|.++..+++++|+++. +.+|+.|.|+|+++. .+|+.|.|+|++.+.++++|+||+|+++|++|+
T Consensus 168 ~~~~~~C~~C~G~G~~~~~~~~~~G~~~~-~~~C~~C~G~G~~~~--~~C~~C~G~g~v~~~~~~~V~Ip~G~~~G~~i~ 244 (386)
T PRK14289 168 NNGSETCPTCKGSGSVTRVQNTILGTMQT-QSTCPTCNGEGKIIK--KKCKKCGGEGIVYGEEVITVKIPAGVAEGMQLS 244 (386)
T ss_pred CCCCCcCCCCcCeEEEEEEEecccceEEE-EEecCCCCccccccC--cCCCCCCCCcEEeeeEEEEEEeCCCCCCCCEEE
Confidence 54 56799999999999999999999875 999999999999987 899999999999999999999999999999999
Q ss_pred EcCCcCCC-CCCCccCEEEEEEEecCCCcEEeCCcEEEEEecCHHHHhCCCEEEEeCCCCCeEEEecCCCceeeCCcEEE
Q 021275 223 FPGEADEA-PDTVTGDIVFVLQQKEHPKFKRKGDDLFVEHTLSLTEALCGFQFVITHLDGRQLLIKSQPGEVVKPGKYNW 301 (315)
Q Consensus 223 l~g~G~~~-~~~~~GDL~v~i~v~~~~~f~r~g~dL~~~~~I~l~~al~G~~~~v~tldG~~~~i~~~~~~v~~pg~~~~ 301 (315)
|+|+|++. .++.+|||||+|++++|+.|+|+++||++++.|+|.+||+|+++.|+||||+ +.|.||++ +++|++++
T Consensus 245 l~g~G~~~~~~~~~GDL~v~v~v~~~~~f~r~g~DL~~~~~Isl~eAl~G~~~~i~~ldg~-i~v~ip~g--~~~g~~~r 321 (386)
T PRK14289 245 MNGKGNAGKHGGVNGDLLVVIEEEPHPELIRDENDLIYNLLLSVPTAALGGAVEVPTIDGK-AKVKIEAG--TQPGKVLR 321 (386)
T ss_pred EeccccCCCCCCCCccEEEEEEEecCCcccccccceeEEeccCHHHHhCCCeEEeecCCce-EEEEECCc--cCCCcEEE
Confidence 99999987 4677899999999999999999999999999999999999999999999996 89999988 99999999
Q ss_pred EeCCCCcc
Q 021275 302 MDVSLNLS 309 (315)
Q Consensus 302 i~~~~~~~ 309 (315)
|+|+|.+.
T Consensus 322 i~g~G~p~ 329 (386)
T PRK14289 322 LRNKGLPS 329 (386)
T ss_pred ECCCCcCC
Confidence 99999863
No 31
>PRK14299 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=3.3e-50 Score=371.14 Aligned_cols=226 Identities=39% Similarity=0.633 Sum_probs=188.7
Q ss_pred CeeeCCCCCCCHHHHHHHHHHHHHHhCCCCCCCH---HHHHHHHHHHhhcCCCccccccccccccccccccC-------C
Q 021275 1 MRFSESRKNASQDDLKKAYRKAAIKNHPDKGGDP---EKFKELAQAYEVLSDPEKREIYDQYGEDALKEGMG-------G 70 (315)
Q Consensus 1 y~vLgv~~~a~~~~ik~ayr~la~~~hPd~~~~~---~~f~~i~~Ay~~L~d~~~R~~YD~~g~~~~~~g~~-------~ 70 (315)
|+||||+++||.+|||+|||+||++||||+|+++ ++|++|++||++|+||.+|+.||+||++++..++. +
T Consensus 7 y~vLgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~~~~f~~i~~Ay~~L~d~~kr~~yD~~g~~~~~~~~~~~~~~~~~ 86 (291)
T PRK14299 7 YAILGVPKNASQDEIKKAFKKLARKYHPDVNKSPGAEEKFKEINEAYTVLSDPEKRRIYDTYGTTAASAGWQGPPPGPPG 86 (291)
T ss_pred HHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCChhHHHHHHHHHHHHHHhcCHHHHHHHHhcCCccccccccCCCCCCCC
Confidence 7899999999999999999999999999999754 89999999999999999999999999875432111 0
Q ss_pred CCC-----CCCCcccccCcccCC-CCCCCC----CCCCCcCCCcceeeeeeeeeeccccceeeEeeceeeEEccCCCCCC
Q 021275 71 GGG-----AHDPFDIFQSFFGGS-PFGGGS----SRGRRQRRGEDVIHPLKVSLEDLYNGTSKKLSLSRNVICTKCKGKG 140 (315)
Q Consensus 71 ~~~-----~~~~~~~F~~~Fgg~-~~~~~~----~~~~~~~~~~d~~~~~~~~l~e~~~G~~~~~~~~~~~~C~~C~G~G 140 (315)
.++ ..++.++|++|||+. ++++.. .....+.++.|+.+.+.|||+|++.|+++++.+.
T Consensus 87 ~~~~~~~~~~~~~d~f~~~fgg~~~~~~~g~~~~~~~~~~~~g~dl~~~l~isL~ea~~G~~~~i~l~------------ 154 (291)
T PRK14299 87 GGDFSGFNVGDFSDFFQQLFGGRGGFGGFGDLFGSVGRRARKGRDLEAELPLTLEEAYRGGEKVVEVA------------ 154 (291)
T ss_pred CCCccccCcCCHHHHHHHHhCCCCCCCCcccccccccCCCCCCCCEEEEEEecHHHHhCCCeEEEeeC------------
Confidence 011 124557888999752 111100 0012235688999999999999999998775321
Q ss_pred cccCCceecCCCcCCceEEEEEecCCcceeEeeeeCCCCCCCceEeCCCCCCCccCCceEEEEeEEEEEEecccccCCcE
Q 021275 141 SKSGASMKCSGCQGSGMKVSIRHLGPSMIQQMQHPCNECKGTGETINDKDRCPQCKGEKVIQEKKVLEVIVEKGMQNGQK 220 (315)
Q Consensus 141 ~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~~C~~C~G~G~~~~~~~~C~~C~G~g~~~~~~~~~v~Ip~G~~~G~~ 220 (315)
.++++|+||||+++|++
T Consensus 155 ---------------------------------------------------------------g~~~~V~Ip~G~~~G~~ 171 (291)
T PRK14299 155 ---------------------------------------------------------------GERLSVRIPPGVREGQV 171 (291)
T ss_pred ---------------------------------------------------------------CEEEEEecCCCcCCCcE
Confidence 24678999999999999
Q ss_pred EEEcCCcCCCCCCCccCEEEEEEEecCCCcEEeCCcEEEEEecCHHHHhCCCEEEEeCCCCCeEEEecCCCceeeCCcEE
Q 021275 221 ITFPGEADEAPDTVTGDIVFVLQQKEHPKFKRKGDDLFVEHTLSLTEALCGFQFVITHLDGRQLLIKSQPGEVVKPGKYN 300 (315)
Q Consensus 221 i~l~g~G~~~~~~~~GDL~v~i~v~~~~~f~r~g~dL~~~~~I~l~~al~G~~~~v~tldG~~~~i~~~~~~v~~pg~~~ 300 (315)
|+|+|+|++. |||||+|++++|+.|+|+|+||+++++|||.+||+|+++.|+||||+ +.|+||++ ++||+++
T Consensus 172 ir~~g~G~~~-----GDL~v~i~v~~h~~f~R~G~DL~~~~~Isl~eAl~G~~~~v~tldG~-~~v~ip~~--~~~g~~~ 243 (291)
T PRK14299 172 IRLAGKGRQG-----GDLYLVVRLLPHPVFRLEGDDLYATVDVPAPIAVVGGKVRVMTLDGP-VEVTIPPR--TQAGRKL 243 (291)
T ss_pred EEECCCCCCC-----CCEEEEEEEcCCCCeEEECCEEEEEEecCHHHHhCCCEEEEECCCCC-EEEEeCCC--cCCCCEE
Confidence 9999999863 99999999999999999999999999999999999999999999996 89999987 9999999
Q ss_pred EEeCCCCcc
Q 021275 301 WMDVSLNLS 309 (315)
Q Consensus 301 ~i~~~~~~~ 309 (315)
+|+|+|.+.
T Consensus 244 rl~g~G~p~ 252 (291)
T PRK14299 244 RLKGKGWPR 252 (291)
T ss_pred EECCCCCCC
Confidence 999999773
No 32
>PRK10266 curved DNA-binding protein CbpA; Provisional
Probab=100.00 E-value=4.7e-49 Score=365.98 Aligned_cols=242 Identities=31% Similarity=0.446 Sum_probs=196.1
Q ss_pred CeeeCCCCCCCHHHHHHHHHHHHHHhCCCCCCCH---HHHHHHHHHHhhcCCCcccccccccccc----ccccc--cCCC
Q 021275 1 MRFSESRKNASQDDLKKAYRKAAIKNHPDKGGDP---EKFKELAQAYEVLSDPEKREIYDQYGED----ALKEG--MGGG 71 (315)
Q Consensus 1 y~vLgv~~~a~~~~ik~ayr~la~~~hPd~~~~~---~~f~~i~~Ay~~L~d~~~R~~YD~~g~~----~~~~g--~~~~ 71 (315)
|+||||+++||.+|||+|||+||++||||+++++ ++|++|++||++|+||.+|+.||+||.. ++... ++++
T Consensus 7 y~~Lgv~~~a~~~eik~ayr~la~k~HPD~~~~~~~~~~f~~i~~Ay~~L~~~~kr~~yD~~g~~~~~~~~~~~~~~~~~ 86 (306)
T PRK10266 7 YAIMGVKPTDDLKTIKTAYRRLARKYHPDVSKEPDAEARFKEVAEAWEVLSDEQRRAEYDQLWQHRNDPQFNRQFQHGDG 86 (306)
T ss_pred HHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCccHHHHHHHHHHHHHHhhhHHHHHHHHHhhccccCcccccccccCCC
Confidence 7899999999999999999999999999998643 8999999999999999999999999854 22210 1111
Q ss_pred --CCCCCCcccccCcccCCCCCCCCCCCCCcCCCcceeeeeeeeeeccccceeeEeeceeeEEccCCCCCCcccCCceec
Q 021275 72 --GGAHDPFDIFQSFFGGSPFGGGSSRGRRQRRGEDVIHPLKVSLEDLYNGTSKKLSLSRNVICTKCKGKGSKSGASMKC 149 (315)
Q Consensus 72 --~~~~~~~~~F~~~Fgg~~~~~~~~~~~~~~~~~d~~~~~~~~l~e~~~G~~~~~~~~~~~~C~~C~G~G~~~~~~~~C 149 (315)
....+|.++|+.|||+++ +.+ +.....++.|+.+.+.|+|+|++.|+.+.+.+.+.+ |
T Consensus 87 ~~~~~~~~~~~f~~~~g~~~--~~~-~~~~~~kg~di~~~v~isLee~~~G~~k~i~~~~~~----~------------- 146 (306)
T PRK10266 87 QSFNAEDFDDIFSSIFGQHA--RQS-RQRPAARGHDIEIEVAVFLEETLTEHKRTISYNLPV----Y------------- 146 (306)
T ss_pred CCCCCCCHHHHHHHHhCCCC--CCC-CCCCCCCCCceEEEEEEEHHHhcCCceEEEEEeccc----c-------------
Confidence 112356678888887421 111 112234688999999999999999999888765432 2
Q ss_pred CCCcCCceEEEEEecCCcceeEeeeeCCCCCCCceEeCCCCCCCccCCceEEEEeEEEEEEecccccCCcEEEEcCCcCC
Q 021275 150 SGCQGSGMKVSIRHLGPSMIQQMQHPCNECKGTGETINDKDRCPQCKGEKVIQEKKVLEVIVEKGMQNGQKITFPGEADE 229 (315)
Q Consensus 150 ~~C~G~G~~~~~~~~~~g~~~~~~~~C~~C~G~G~~~~~~~~C~~C~G~g~~~~~~~~~v~Ip~G~~~G~~i~l~g~G~~ 229 (315)
.|.|. +. ....++++|.||+|+++|++|+|+|+|++
T Consensus 147 ---~g~G~---------------------------~~--------------~~~~~~~~V~Ip~G~~~G~~i~~~g~G~~ 182 (306)
T PRK10266 147 ---NAFGM---------------------------IE--------------QEIPKTLNVKIPAGVGNGQRIRLKGQGTP 182 (306)
T ss_pred ---cCCCe---------------------------EE--------------EeeeEEEEEEECCCCcCCcEEEEecCCcC
Confidence 12221 10 01235799999999999999999999998
Q ss_pred CC-CCCccCEEEEEEEecCCCcEEeCCcEEEEEecCHHHHhCCCEEEEeCCCCCeEEEecCCCceeeCCcEEEEeCCCCc
Q 021275 230 AP-DTVTGDIVFVLQQKEHPKFKRKGDDLFVEHTLSLTEALCGFQFVITHLDGRQLLIKSQPGEVVKPGKYNWMDVSLNL 308 (315)
Q Consensus 230 ~~-~~~~GDL~v~i~v~~~~~f~r~g~dL~~~~~I~l~~al~G~~~~v~tldG~~~~i~~~~~~v~~pg~~~~i~~~~~~ 308 (315)
.. +..+|||||+|+++||+.|+|+|+||+++++|||.+|++|+++.|+|+||+ +.|++|++ +++|++++|+|+|.+
T Consensus 183 ~~~~~~~GDl~v~i~v~ph~~f~r~g~DL~~~~~Isl~~al~G~~~~i~~~~g~-v~v~ip~g--~~~g~~~ri~g~G~p 259 (306)
T PRK10266 183 GENGGPNGDLWLVIHIAPHPLFDIVGQDLEIVVPLAPWEAALGAKVTVPTLKES-ILLTIPPG--SQAGQRLRVKGKGLV 259 (306)
T ss_pred CCCCCCCccEEEEEEEcCCCCeEEeCCceEEEEecCHHHHhCCCEEEeeCCCcc-EEEEeCCC--cCCCCEEEECCCCCC
Confidence 64 567899999999999999999999999999999999999999999999997 89999988 899999999999976
Q ss_pred c
Q 021275 309 S 309 (315)
Q Consensus 309 ~ 309 (315)
+
T Consensus 260 ~ 260 (306)
T PRK10266 260 S 260 (306)
T ss_pred C
Confidence 4
No 33
>KOG0715 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.6e-39 Score=295.51 Aligned_cols=239 Identities=31% Similarity=0.624 Sum_probs=202.3
Q ss_pred CeeeCCCCCCCHHHHHHHHHHHHHHhCCCCCCCH---HHHHHHHHHHhhcCCCccccccccccccccccccCCCCCCCCC
Q 021275 1 MRFSESRKNASQDDLKKAYRKAAIKNHPDKGGDP---EKFKELAQAYEVLSDPEKREIYDQYGEDALKEGMGGGGGAHDP 77 (315)
Q Consensus 1 y~vLgv~~~a~~~~ik~ayr~la~~~hPd~~~~~---~~f~~i~~Ay~~L~d~~~R~~YD~~g~~~~~~g~~~~~~~~~~ 77 (315)
|+||||+++|+..|||+||++||++||||.|.++ ++|++|.+|||+|+|++||+.||.++..+.. +...++
T Consensus 46 Y~vLgv~~~At~~EIK~Af~~LaKkyHPD~n~~~~a~~kF~eI~~AYEiLsd~eKR~~YD~~~~~~~~------~~~g~~ 119 (288)
T KOG0715|consen 46 YKVLGVSRNATLSEIKSAFRKLAKKYHPDVNKDKEASKKFKEISEAYEILSDEEKRQEYDVYGLEQHG------EFGGNP 119 (288)
T ss_pred hhhhCcCCCCCHHHHHHHHHHHHHhhCCCCCCCcchhhHHHHHHHHHHHhcCHHHHHHHHHhhhhccc------cccCCc
Confidence 8999999999999999999999999999999865 8999999999999999999999999876511 112367
Q ss_pred cccccCcccCCCCCCCCCCCCCcCCCcceeeeeeeeeeccccceeeEeeceeeEEccCCCCCCcccCC-ceecCCCcCCc
Q 021275 78 FDIFQSFFGGSPFGGGSSRGRRQRRGEDVIHPLKVSLEDLYNGTSKKLSLSRNVICTKCKGKGSKSGA-SMKCSGCQGSG 156 (315)
Q Consensus 78 ~~~F~~~Fgg~~~~~~~~~~~~~~~~~d~~~~~~~~l~e~~~G~~~~~~~~~~~~C~~C~G~G~~~~~-~~~C~~C~G~G 156 (315)
+++|..+|++. ..+...+.+.+..+.++|+++..|+.+.+.+.....|.+|.|.|...+. ...|..|.|.|
T Consensus 120 ~~~~~~~~~~~--------~~~~~~~~~~~~d~~~~f~~A~~g~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~ 191 (288)
T KOG0715|consen 120 FDVFLEFFGGK--------MNKRVPDKDQYYDLSLDFKEAVRGSKKRISFNVLSDCETCFGSGAEEGAKRESCKTCSGRG 191 (288)
T ss_pred cchHHHhhccc--------ccccccCcccccccccCHHHHhhccccceEEEeecccccccCcCcccccccccchhhhCcc
Confidence 88888888741 0111234566677999999999999999999999999999999987765 46699999999
Q ss_pred eEEEEEecCCcceeEeeeeCCCCCCCceEeCCCCCCCccCCceEEEEeEEEEEEecccccCCcEEEEcCCcCCCCCCCcc
Q 021275 157 MKVSIRHLGPSMIQQMQHPCNECKGTGETINDKDRCPQCKGEKVIQEKKVLEVIVEKGMQNGQKITFPGEADEAPDTVTG 236 (315)
Q Consensus 157 ~~~~~~~~~~g~~~~~~~~C~~C~G~G~~~~~~~~C~~C~G~g~~~~~~~~~v~Ip~G~~~G~~i~l~g~G~~~~~~~~G 236 (315)
.........+. .. +|..|.|.|.+.. ..|..|.|.+.+...+.+.|.+|+|+.++.+|++.+.|..
T Consensus 192 ~~~~~~~~~f~----~~-~~~~c~~~~~~~~--~~c~~~~g~~~v~~~k~i~i~~~~g~~~~~~l~~~~~~~~------- 257 (288)
T KOG0715|consen 192 LVSNPKEDPFI----LY-TCSYCLGRGLVLR--DNCQACSGAGQVRRAKDIMIVLPAGVRSADTLRFAGHGND------- 257 (288)
T ss_pred cccccccCCcc----ee-ecccccccceecc--chHHHhhcchhhhhheeEEeecCcccccccEEEEecCCcc-------
Confidence 54433333221 12 8999999999987 5599999999999999999999999999999999998743
Q ss_pred CEEEEEEEecCCCcEEeCCcEEEEEecCHHH
Q 021275 237 DIVFVLQQKEHPKFKRKGDDLFVEHTLSLTE 267 (315)
Q Consensus 237 DL~v~i~v~~~~~f~r~g~dL~~~~~I~l~~ 267 (315)
||+|.+.|.+++.|+|+|.|++++..|++.+
T Consensus 258 ~l~v~~~v~~~~~~~r~~~~i~~~~~i~~~~ 288 (288)
T KOG0715|consen 258 DLFVRLIVAKSPSFRREGKDILYDAIISFTQ 288 (288)
T ss_pred eEEEEEEeccCcccccccCcccccccccccC
Confidence 9999999999999999999999999998764
No 34
>KOG0713 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.5e-39 Score=295.03 Aligned_cols=278 Identities=38% Similarity=0.603 Sum_probs=208.0
Q ss_pred CeeeCCCCCCCHHHHHHHHHHHHHHhCCCCCCCH----HHHHHHHHHHhhcCCCccccccccccccccccccCCCCCCCC
Q 021275 1 MRFSESRKNASQDDLKKAYRKAAIKNHPDKGGDP----EKFKELAQAYEVLSDPEKREIYDQYGEDALKEGMGGGGGAHD 76 (315)
Q Consensus 1 y~vLgv~~~a~~~~ik~ayr~la~~~hPd~~~~~----~~f~~i~~Ay~~L~d~~~R~~YD~~g~~~~~~g~~~~~~~~~ 76 (315)
|+||||+++||..|||+||||||++||||+||++ ++|++|+.||||||||++|+.||+||++++......+.++..
T Consensus 19 YelLgV~k~Asd~eIKkAYRKLALk~HPDkNpddp~A~e~F~~in~AYEVLsDpekRk~YD~~GEegL~~~~~~~~~g~~ 98 (336)
T KOG0713|consen 19 YELLGVPKNASDQEIKKAYRKLALKYHPDKNPDDPNANEKFKEINAAYEVLSDPEKRKHYDTYGEEGLKDENKDGEGGGG 98 (336)
T ss_pred HHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHhhhHhhhcccccccccCCc
Confidence 8999999999999999999999999999999965 899999999999999999999999999999743111101111
Q ss_pred CcccccCcccCCCC--CCCCCCCCCcCCCcceeeeeeeeeeccccceeeEeeceeeEEccCCCCCCcccCCceecCCCcC
Q 021275 77 PFDIFQSFFGGSPF--GGGSSRGRRQRRGEDVIHPLKVSLEDLYNGTSKKLSLSRNVICTKCKGKGSKSGASMKCSGCQG 154 (315)
Q Consensus 77 ~~~~F~~~Fgg~~~--~~~~~~~~~~~~~~d~~~~~~~~l~e~~~G~~~~~~~~~~~~C~~C~G~G~~~~~~~~C~~C~G 154 (315)
-.++|+.||+..++ ++... .+...++.++...++.+++++|.+...+....+.+.|+ |.|+ . .|+=
T Consensus 99 ~~~~f~~~f~dfg~~~~g~~~-~e~~~~g~~V~~~~e~~~~h~y~~~~~e~~r~~~v~~~-~~g~--~--------~~~~ 166 (336)
T KOG0713|consen 99 GNDIFSAFFGDFGVTVGGNPL-EEALPKGSDVSSDLEKQLEHFYMGNFVEEVREKGVYKP-APGT--R--------KCNC 166 (336)
T ss_pred ccchHHHhhcccccccCCCcc-cCCCCCCceEEeehhhchhhhhcccHHHHHhccCceee-cCcc--c--------ccCC
Confidence 13455555542211 12111 12256788999999999999999876554433333332 1111 0 1111
Q ss_pred CceEEEEEecCCcceeEeeeeCCCCCCCceEeCCCCCCCccCCceEEEEeEEEEEEecccccCCcEEEEcCCcCCCCCCC
Q 021275 155 SGMKVSIRHLGPSMIQQMQHPCNECKGTGETINDKDRCPQCKGEKVIQEKKVLEVIVEKGMQNGQKITFPGEADEAPDTV 234 (315)
Q Consensus 155 ~G~~~~~~~~~~g~~~~~~~~C~~C~G~G~~~~~~~~C~~C~G~g~~~~~~~~~v~Ip~G~~~G~~i~l~g~G~~~~~~~ 234 (315)
. ..+..++.++|+++.++ +..|..|.+.+...++..+++.+..+...+....+..+|.+..-+.
T Consensus 167 ~-~~~~~~~~~~g~~~~~q---------------~~~~~~~~~~k~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~ 230 (336)
T KOG0713|consen 167 R-LEMFTQQEGPGRFQMLQ---------------EAVCDECPNVKLVLEEDPLEVEFERGDADGPEEIFELEGEPHIDGV 230 (336)
T ss_pred h-hhheeeccCCChhhhhh---------------hhhhccCCccceeecCCceeeeeeecccCCceeeeeccCCcceecc
Confidence 0 11223344444444433 2556666667777889999999999999999999999998877788
Q ss_pred ccCEEEEEEEecCCCcEEeCCcEEEEEecCHHHHhCCCEEEEeCCCCCeEEEecCCCceeeCCcEEEEeCCCCc
Q 021275 235 TGDIVFVLQQKEHPKFKRKGDDLFVEHTLSLTEALCGFQFVITHLDGRQLLIKSQPGEVVKPGKYNWMDVSLNL 308 (315)
Q Consensus 235 ~GDL~v~i~v~~~~~f~r~g~dL~~~~~I~l~~al~G~~~~v~tldG~~~~i~~~~~~v~~pg~~~~i~~~~~~ 308 (315)
+||+++.+..-+|+.|.|++++|++.+.+++.+++.|+..++.++|+..+.+. .-.+..|+..++..++++.
T Consensus 231 ~gD~~f~~~~y~~~~~~~k~~~~~~n~~~sl~~~~v~~~~e~~~~d~~~~~~~--r~~~~~p~~~~~~~~~~~~ 302 (336)
T KOG0713|consen 231 PGDLFFKIVSYTHPRFERKGDDLYTNVTISLEAALVGFEMEILHLDGHYVEVS--RKKITWPGARTRKKGEGMP 302 (336)
T ss_pred cCCceeeeEEecccceecCccchhhHHHHHHHHHHHHHHHHhhccchhhhhhh--hhhccccchhhhhhhccch
Confidence 99999999999999999999999999999999999999999999999865554 3456889999998888876
No 35
>TIGR03835 termin_org_DnaJ terminal organelle assembly protein TopJ. This model describes TopJ (MG_200, CbpA), a DnaJ homolog and probable assembly protein of the Mycoplasma terminal organelle. The terminal organelle is involved in both cytadherence and gliding motility.
Probab=100.00 E-value=1.1e-34 Score=285.82 Aligned_cols=103 Identities=17% Similarity=0.105 Sum_probs=96.8
Q ss_pred EEeEEEEEEecccccCCcEEEEcCCcCCCCCCCccCEEEEEEEecCCCcEEeCCcEEEEEecCHHHHhCCCEEEEeCCCC
Q 021275 202 QEKKVLEVIVEKGMQNGQKITFPGEADEAPDTVTGDIVFVLQQKEHPKFKRKGDDLFVEHTLSLTEALCGFQFVITHLDG 281 (315)
Q Consensus 202 ~~~~~~~v~Ip~G~~~G~~i~l~g~G~~~~~~~~GDL~v~i~v~~~~~f~r~g~dL~~~~~I~l~~al~G~~~~v~tldG 281 (315)
...++++|+||+|+++|++|+|+|+|+..+++. |||||+|++++|+.|+|+|+|||++++|+|.+||+|+++.|+||||
T Consensus 694 kE~ktLeVkIPpGVkdGqkIRf~GeGDegpgg~-GDLyVvIkVKPHp~FrRdGdDL~~~v~ISL~EALLGgtIeIpTLDG 772 (871)
T TIGR03835 694 NEAITLEIQLPITSQLNISAIFKGFGHDFGNGC-GDLKVVFKVIPSNFFQIKNDGLHVAALVDPLVAYNGGIIDVFGPNK 772 (871)
T ss_pred eeeEEEEEecCCCCCCCCEEEeccccCCCCCCC-CCEEEEEEEcCCCCeEEECCeEEEEEecCHHHHhcCCEEEeeCCCC
Confidence 456789999999999999999999999876554 9999999999999999999999999999999999999999999999
Q ss_pred CeEEEecCCCceeeCCcEEEEeCCCCc
Q 021275 282 RQLLIKSQPGEVVKPGKYNWMDVSLNL 308 (315)
Q Consensus 282 ~~~~i~~~~~~v~~pg~~~~i~~~~~~ 308 (315)
+ +.|+||++ ++||++++|+|+|.+
T Consensus 773 r-VkLkIPpg--TqpGqvLRIkGKGMP 796 (871)
T TIGR03835 773 L-FNVRIPGG--IKVNDQVIFKDLGLT 796 (871)
T ss_pred C-EEEeeCCC--CCCCcEEEECCCCCC
Confidence 7 88999987 999999999999976
No 36
>KOG0714 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.87 E-value=5.7e-22 Score=182.17 Aligned_cols=246 Identities=43% Similarity=0.705 Sum_probs=173.2
Q ss_pred CeeeCCCCCCCHHHHHHHHHHHHHHhCCCCCCCH-----HHHHHHHHHHhhcCCCccccccccccccccccccC--CC--
Q 021275 1 MRFSESRKNASQDDLKKAYRKAAIKNHPDKGGDP-----EKFKELAQAYEVLSDPEKREIYDQYGEDALKEGMG--GG-- 71 (315)
Q Consensus 1 y~vLgv~~~a~~~~ik~ayr~la~~~hPd~~~~~-----~~f~~i~~Ay~~L~d~~~R~~YD~~g~~~~~~g~~--~~-- 71 (315)
|+||+|.++|+.+||++||+++|++||||+++.+ ++|++|++||++|+|+.+|.+||+||++++.+... +.
T Consensus 6 ~~~l~i~~~as~~~i~ka~~~~a~~~hpdk~~~~~~~~~~~~~~~~ea~~~ls~~~kr~~~d~~~~~~~~~~~~~~~~~~ 85 (306)
T KOG0714|consen 6 YKILGIARSASEEDIKKAYRKLALKYHPDKNPSPKEVAEAKFKEIAEAYEVLSDPKKRKIYDQYGEEGLKGGGSFSSSFT 85 (306)
T ss_pred HHHhCccccccHHHHHHHHHHHHHhhCCCCCCCchhhHHHHHhhhhccccccCCHHHhhhccccCccccccCCCCCCCCC
Confidence 6899999999999999999999999999998754 57999999999999999999999999866653110 00
Q ss_pred C-----CCCCCcccccCcccCC-CCCCC---------------------------CCC---------CCCcCCCcceeee
Q 021275 72 G-----GAHDPFDIFQSFFGGS-PFGGG---------------------------SSR---------GRRQRRGEDVIHP 109 (315)
Q Consensus 72 ~-----~~~~~~~~F~~~Fgg~-~~~~~---------------------------~~~---------~~~~~~~~d~~~~ 109 (315)
. ....+.++|..|||.. .+... ... .........+...
T Consensus 86 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (306)
T KOG0714|consen 86 SELFYFLFRKPDKDFYEFFGVSSPFSGSKKGYRDKNAAPGEEAFKSEGKAFQSLYGPKRKQYDSSGSDRSARQSPPVEHP 165 (306)
T ss_pred CCcceeccCchhhhHHHHhCCCCCCccccccCCccccccCccccccccccccccCCCcccccccccccccccCCCCccCC
Confidence 0 1112234455555521 11000 000 0000011112223
Q ss_pred eeeeeeccccceeeEeeceeeEEccCCCCCCcccCCceecCCCcCCceEEEEEecCCcceeEeeeeCCCCCCCceEeCCC
Q 021275 110 LKVSLEDLYNGTSKKLSLSRNVICTKCKGKGSKSGASMKCSGCQGSGMKVSIRHLGPSMIQQMQHPCNECKGTGETINDK 189 (315)
Q Consensus 110 ~~~~l~e~~~G~~~~~~~~~~~~C~~C~G~G~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~~C~~C~G~G~~~~~~ 189 (315)
+.+++++.+.++.....+.+... ... +..
T Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~-----------------------------------------~~~------~~~---- 194 (306)
T KOG0714|consen 166 LRVSLEDLYKGESKKMKISRQSF-----------------------------------------TSN------GRE---- 194 (306)
T ss_pred cceeHHHhccccceeeecccccc-----------------------------------------cCC------ccc----
Confidence 33355555555554443332111 000 000
Q ss_pred CCCCccCCceEEEEeEEEEEEecccccCCcEEEEcCCcCCCCCCCccCEEEEEEEecCCCcEEeCCcEEEE--EecCHHH
Q 021275 190 DRCPQCKGEKVIQEKKVLEVIVEKGMQNGQKITFPGEADEAPDTVTGDIVFVLQQKEHPKFKRKGDDLFVE--HTLSLTE 267 (315)
Q Consensus 190 ~~C~~C~G~g~~~~~~~~~v~Ip~G~~~G~~i~l~g~G~~~~~~~~GDL~v~i~v~~~~~f~r~g~dL~~~--~~I~l~~ 267 (315)
.......+.+.+.+++..|+.+....+|...++..+-++++.+..++|..|.+.+.+|... ..|++.+
T Consensus 195 ----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~f~~~~~~~~~~~~~~~~l~~~~~~~~s~~~ 264 (306)
T KOG0714|consen 195 ----------GSSRSRYLSISIKPGWKEGTKITFPEEGDEEPGILPADIEFVVDEKPHPLFSRDGNDLSYSSGYEISLKE 264 (306)
T ss_pred ----------ccCccceeEEeccCCcccccceeccccccccCCcCcceeEEEEecCCcccccCCCccceecccceeehhh
Confidence 1123567789999999999999999999877667788999999999999999999999999 9999999
Q ss_pred HhCCCEEEEeCCCCCeEEEecCCC-ceeeCCcEEEEeCCCCcc
Q 021275 268 ALCGFQFVITHLDGRQLLIKSQPG-EVVKPGKYNWMDVSLNLS 309 (315)
Q Consensus 268 al~G~~~~v~tldG~~~~i~~~~~-~v~~pg~~~~i~~~~~~~ 309 (315)
|++|....++++++..+.+. .. .++.|+++.+|++.+.+.
T Consensus 265 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~ 305 (306)
T KOG0714|consen 265 ALLGVTVFVPTLDGRSYSLS--INKDLIEPGEEDVIPGEGLPC 305 (306)
T ss_pred hhcCcceeeecccCccccCc--ccccccCCCceeeecCCCCCC
Confidence 99999999999999855444 44 789999999999998763
No 37
>COG0484 DnaJ DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.76 E-value=1.7e-18 Score=161.68 Aligned_cols=139 Identities=20% Similarity=0.449 Sum_probs=98.1
Q ss_pred eeeeeee---ccccceeeEeeceeeEEccCCCCCCcccC--------CceecCCCcCCceEEEEEecCCcceeEeeeeCC
Q 021275 109 PLKVSLE---DLYNGTSKKLSLSRNVICTKCKGKGSKSG--------ASMKCSGCQGSGMKVSIRHLGPSMIQQMQHPCN 177 (315)
Q Consensus 109 ~~~~~l~---e~~~G~~~~~~~~~~~~C~~C~G~G~~~~--------~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~~C~ 177 (315)
.+.++-. +.|.|...+ ......+|++|+|+|.... ..++|+.|+|+| +.+..+|+
T Consensus 136 ~i~~~~~~~C~~C~GsGak-~gt~~~tC~tC~G~G~v~~~~~~g~~~~~~~C~~C~G~G-------------~~i~~pC~ 201 (371)
T COG0484 136 EIRVTRSVTCSTCHGSGAK-PGTDPKTCPTCNGSGQVRTVQRTGFFSFQQTCPTCNGTG-------------KIIKDPCG 201 (371)
T ss_pred eEecceeeECCcCCCCCCC-CCCCCCcCCCCCCcCeEEEEEeeeEEEEEEECCCCccce-------------eECCCCCC
Confidence 3444444 566666544 4446789999999998532 237899999999 56789999
Q ss_pred CCCCCceEeCCCC-----CCCccCCc----------------------------------------------------e-
Q 021275 178 ECKGTGETINDKD-----RCPQCKGE----------------------------------------------------K- 199 (315)
Q Consensus 178 ~C~G~G~~~~~~~-----~C~~C~G~----------------------------------------------------g- 199 (315)
+|+|.|.+...+. +--...|. |
T Consensus 202 ~C~G~G~v~~~~~i~V~IPaGv~~g~~ir~~g~G~~g~~Ggp~GDLyv~i~v~~h~~F~R~g~dL~~~~~Is~~~AalG~ 281 (371)
T COG0484 202 KCKGKGRVKKKKSISVNIPAGVDDGDRIRLSGEGEAGPNGGPAGDLYVFVHVKPHPIFERDGDDLYCEVPISFTEAALGG 281 (371)
T ss_pred CCCCCCeEeeeeEEEEECCCCCccCCEEEEecCcccCCCCCCCccEEEEEEeecCCCeEECCCceEeccccCHHHHhcCC
Confidence 9999998654110 00011111 1
Q ss_pred EEE---EeEEEEEEecccccCCcEEEEcCCcCCC-CCCCccCEEEEEEEecCCCcEEeCCcEEEEE
Q 021275 200 VIQ---EKKVLEVIVEKGMQNGQKITFPGEADEA-PDTVTGDIVFVLQQKEHPKFKRKGDDLFVEH 261 (315)
Q Consensus 200 ~~~---~~~~~~v~Ip~G~~~G~~i~l~g~G~~~-~~~~~GDL~v~i~v~~~~~f~r~g~dL~~~~ 261 (315)
.+. ....++|+||||+++|++++|+|+|++. .+...|||||+|+|..|+.+..++.+|+.++
T Consensus 282 ~i~vptl~g~~~l~ip~Gtq~G~~~rl~gkG~p~~~~~~~GDl~v~v~v~~P~~ls~~q~~lL~~~ 347 (371)
T COG0484 282 EIEVPTLDGRVKLKIPAGTQTGEVFRLRGKGMPKLRSGGRGDLYVRVKVETPKNLSDEQKELLEEF 347 (371)
T ss_pred EEEEEecCCCEEEecCCCCccCcEEEEcCCCccccCCCCcCCEEEEEEEEcCCCCCHHHHHHHHHH
Confidence 000 0113569999999999999999999996 5667799999999999999877777666543
No 38
>KOG0718 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.76 E-value=2.6e-19 Score=168.03 Aligned_cols=69 Identities=52% Similarity=0.871 Sum_probs=64.4
Q ss_pred CeeeCCCCCCCHHHHHHHHHHHHHHhCCCCCCCH-------HHHHHHHHHHhhcCCCccccccccccccccc-cccC
Q 021275 1 MRFSESRKNASQDDLKKAYRKAAIKNHPDKGGDP-------EKFKELAQAYEVLSDPEKREIYDQYGEDALK-EGMG 69 (315)
Q Consensus 1 y~vLgv~~~a~~~~ik~ayr~la~~~hPd~~~~~-------~~f~~i~~Ay~~L~d~~~R~~YD~~g~~~~~-~g~~ 69 (315)
|.+|+|+++||.+||++|||++++.||||++.++ ++|+.|.+||||||||.+|++||.||++|++ +|+.
T Consensus 12 Ya~LNlpkdAt~eeI~~AYrr~~~lfHPDkh~dpd~K~~AE~~F~~i~~AyEVLsDp~kRaIYD~~G~qGL~t~gwE 88 (546)
T KOG0718|consen 12 YALLNLPKDATDEEIKKAYRRLSRLFHPDKHTDPDQKKAAEEKFQRIQRAYEVLSDPQKRAIYDNYGEQGLKTEGWE 88 (546)
T ss_pred HHHhCCCcccCHHHHHHHHHHHHHhcCCcccCChhHHHHHHHHHHHHHHHHHHhcChHHHHHHHHhhhccccccCce
Confidence 7899999999999999999999999999998765 6899999999999999999999999999997 6653
No 39
>KOG0716 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.76 E-value=3.4e-19 Score=157.61 Aligned_cols=65 Identities=57% Similarity=0.952 Sum_probs=61.8
Q ss_pred CeeeCCCCCCCHHHHHHHHHHHHHHhCCCCCCC-H---HHHHHHHHHHhhcCCCccccccccccccccc
Q 021275 1 MRFSESRKNASQDDLKKAYRKAAIKNHPDKGGD-P---EKFKELAQAYEVLSDPEKREIYDQYGEDALK 65 (315)
Q Consensus 1 y~vLgv~~~a~~~~ik~ayr~la~~~hPd~~~~-~---~~f~~i~~Ay~~L~d~~~R~~YD~~g~~~~~ 65 (315)
|+|||++++|+.++||||||+||+++|||++++ + ++|++||+||+||+||.+|.+||.||+.++.
T Consensus 34 YdVLgl~k~at~d~IKKaYR~L~~k~HPD~~gd~P~~~dkf~eIN~Ay~ILsD~~kR~~YD~~g~~~l~ 102 (279)
T KOG0716|consen 34 YDVLGLPKTATKDEIKKAYRKLALKYHPDKNGDNPEATDKFKEINTAYAILSDPTKRNVYDEYGELGLK 102 (279)
T ss_pred HHHhCCCcccchHHHHHHHHHHHHHhCCCcCCCCchhHHHHHHHHHHHHHhcChhhhhhHHHhhhHHHH
Confidence 789999999999999999999999999999987 3 8999999999999999999999999988775
No 40
>PHA03102 Small T antigen; Reviewed
Probab=99.74 E-value=1.2e-18 Score=144.68 Aligned_cols=81 Identities=31% Similarity=0.407 Sum_probs=70.1
Q ss_pred CeeeCCCCCC--CHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHhhcCCCccccccccccccccccccCCCCCCCCCc
Q 021275 1 MRFSESRKNA--SQDDLKKAYRKAAIKNHPDKGGDPEKFKELAQAYEVLSDPEKREIYDQYGEDALKEGMGGGGGAHDPF 78 (315)
Q Consensus 1 y~vLgv~~~a--~~~~ik~ayr~la~~~hPd~~~~~~~f~~i~~Ay~~L~d~~~R~~YD~~g~~~~~~g~~~~~~~~~~~ 78 (315)
|+||||+++| |.++||+|||++|+++|||+++++++|++|++||++|+|+.+|..||.+|....... ...+.
T Consensus 8 ~~vLGl~~~A~~s~~eIKkAYr~la~~~HPDkgg~~e~~k~in~Ay~~L~d~~~r~~yd~~g~~~~~~~------~~~~~ 81 (153)
T PHA03102 8 MDLLGLPRSAWGNLPLMRKAYLRKCLEFHPDKGGDEEKMKELNTLYKKFRESVKSLRDLDGEEDSSSEE------EDVPS 81 (153)
T ss_pred HHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCchhHHHHHHHHHHHHHhhHHHhccccccCCcccccc------cccHH
Confidence 5799999999 999999999999999999999988999999999999999999999999997654322 12256
Q ss_pred ccccCcccC
Q 021275 79 DIFQSFFGG 87 (315)
Q Consensus 79 ~~F~~~Fgg 87 (315)
++|...||+
T Consensus 82 ~~f~~~fg~ 90 (153)
T PHA03102 82 GYVGATFGD 90 (153)
T ss_pred HHhhhhcCC
Confidence 677777764
No 41
>PTZ00341 Ring-infected erythrocyte surface antigen; Provisional
Probab=99.73 E-value=9.9e-19 Score=177.12 Aligned_cols=66 Identities=29% Similarity=0.518 Sum_probs=62.0
Q ss_pred CeeeCCCCCCCHHHHHHHHHHHHHHhCCCCCCCH---HHHHHHHHHHhhcCCCcccccccccccccccc
Q 021275 1 MRFSESRKNASQDDLKKAYRKAAIKNHPDKGGDP---EKFKELAQAYEVLSDPEKREIYDQYGEDALKE 66 (315)
Q Consensus 1 y~vLgv~~~a~~~~ik~ayr~la~~~hPd~~~~~---~~f~~i~~Ay~~L~d~~~R~~YD~~g~~~~~~ 66 (315)
|+||||+++||.++||+|||+||++||||+++++ ++|++|++||+|||||.+|+.||+||..++..
T Consensus 576 YdILGVs~dAS~~EIKKAYRKLAlkyHPDKN~~~~A~ekFq~I~EAYeVLSDp~kRk~YD~~G~~Gl~~ 644 (1136)
T PTZ00341 576 YDILGVGVNADMKEISERYFKLAENYYPPKRSGNEGFHKFKKINEAYQILGDIDKKKMYNKFGYDGIKG 644 (1136)
T ss_pred HHHcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHhhccccccCC
Confidence 8999999999999999999999999999999854 79999999999999999999999999887653
No 42
>PRK10767 chaperone protein DnaJ; Provisional
Probab=99.71 E-value=2.3e-17 Score=157.57 Aligned_cols=139 Identities=19% Similarity=0.431 Sum_probs=94.5
Q ss_pred eeeeeeeccc---cceeeEeeceeeEEccCCCCCCcccC------CceecCCCcCCceEEEEEecCCcceeEeeeeCCCC
Q 021275 109 PLKVSLEDLY---NGTSKKLSLSRNVICTKCKGKGSKSG------ASMKCSGCQGSGMKVSIRHLGPSMIQQMQHPCNEC 179 (315)
Q Consensus 109 ~~~~~l~e~~---~G~~~~~~~~~~~~C~~C~G~G~~~~------~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~~C~~C 179 (315)
.+.++....| .|.... .-.....|+.|+|+|.... ...+|+.|+|+|. .+..+|+.|
T Consensus 136 ~v~~~r~~~C~~C~G~G~~-~~~~~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~-------------~~~~~C~~C 201 (371)
T PRK10767 136 EIRIPTLVTCDTCHGSGAK-PGTSPKTCPTCHGAGQVRMQQGFFTVQQTCPTCHGRGK-------------IIKDPCKKC 201 (371)
T ss_pred EEeeeecccCCCCCCcccC-CCCCCccCCCCCCeeEEEEeeceEEEEEeCCCCCCcee-------------ECCCCCCCC
Confidence 3444445444 454433 2223468999999997531 2467999999993 456889999
Q ss_pred CCCceEeCCCC----------------------CCC--ccCCceEEEE--------------------------------
Q 021275 180 KGTGETINDKD----------------------RCP--QCKGEKVIQE-------------------------------- 203 (315)
Q Consensus 180 ~G~G~~~~~~~----------------------~C~--~C~G~g~~~~-------------------------------- 203 (315)
+|+|.+..... ... .=.|.-++..
T Consensus 202 ~G~g~v~~~~~l~V~Ip~G~~~G~~i~~~g~G~~~~~~~~~GDL~v~i~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~ 281 (371)
T PRK10767 202 HGQGRVEKEKTLSVKIPAGVDTGDRIRLSGEGEAGERGGPAGDLYVQIHVKEHPIFERDGNDLYCEVPISFTTAALGGEI 281 (371)
T ss_pred CCCceEeeeeeEEEecCCCCCCCcEEEEecCccCCCCCCCCcCEEEEEEEeeCCCEEEecCCEEEEEEeCHHHHhCCCeE
Confidence 99987543100 000 0001101110
Q ss_pred -----eEEEEEEecccccCCcEEEEcCCcCCCC-CCCccCEEEEEEEecCCCcEEeCCcEEEEE
Q 021275 204 -----KKVLEVIVEKGMQNGQKITFPGEADEAP-DTVTGDIVFVLQQKEHPKFKRKGDDLFVEH 261 (315)
Q Consensus 204 -----~~~~~v~Ip~G~~~G~~i~l~g~G~~~~-~~~~GDL~v~i~v~~~~~f~r~g~dL~~~~ 261 (315)
...++|.||+|+++|++++|+|+|++.. ++.+|||||+|+|..|+.|++++.+|+.++
T Consensus 282 ~i~~ldG~i~v~ip~g~~~g~~~~i~g~G~p~~~~~~~GDL~v~~~v~~P~~l~~~~~~ll~~l 345 (371)
T PRK10767 282 EVPTLDGRVKLKIPEGTQTGKLFRLRGKGVKSVRSGARGDLYCQVVVETPVNLTKRQKELLEEF 345 (371)
T ss_pred EEecCCCcEEEEeCCCCCCCCEEEECCCCcCCCCCCCCCCEEEEEEEECCCCCCHHHHHHHHHH
Confidence 0145699999999999999999999864 456799999999999999999998887664
No 43
>KOG0691 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.67 E-value=1.1e-17 Score=152.82 Aligned_cols=83 Identities=41% Similarity=0.646 Sum_probs=70.0
Q ss_pred CeeeCCCCCCCHHHHHHHHHHHHHHhCCCCCCCH----HHHHHHHHHHhhcCCCccccccccccccccccccCCCCCCCC
Q 021275 1 MRFSESRKNASQDDLKKAYRKAAIKNHPDKGGDP----EKFKELAQAYEVLSDPEKREIYDQYGEDALKEGMGGGGGAHD 76 (315)
Q Consensus 1 y~vLgv~~~a~~~~ik~ayr~la~~~hPd~~~~~----~~f~~i~~Ay~~L~d~~~R~~YD~~g~~~~~~g~~~~~~~~~ 76 (315)
|+||||+.+|+.+||++|||+.|++||||+||++ ++|+++.+||+||+|+.+|+.||.++..+...- ...+
T Consensus 8 Y~lLgi~~~at~~eIkKaYr~kaL~~HPDKNp~dP~A~ekFq~L~eAy~VL~D~~~R~~YDk~~k~~~~~~-----~~~d 82 (296)
T KOG0691|consen 8 YDLLGISEDATDAEIKKAYRKKALQYHPDKNPGDPQAAEKFQELSEAYEVLSDEESRAAYDKLRKSGSSAQ-----GRED 82 (296)
T ss_pred HHHhCCCCCCCHHHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhhcccch-----hhhh
Confidence 7899999999999999999999999999999965 899999999999999999999999987655321 2334
Q ss_pred CcccccCcccCC
Q 021275 77 PFDIFQSFFGGS 88 (315)
Q Consensus 77 ~~~~F~~~Fgg~ 88 (315)
..++|...|++.
T Consensus 83 ~~~~~r~~f~~d 94 (296)
T KOG0691|consen 83 QADGFRKKFGSD 94 (296)
T ss_pred HHHHHHHHhhhh
Confidence 556666666643
No 44
>COG2214 CbpA DnaJ-class molecular chaperone [Posttranslational modification, protein turnover, chaperones]
Probab=99.66 E-value=4.9e-16 Score=136.57 Aligned_cols=60 Identities=52% Similarity=0.826 Sum_probs=56.6
Q ss_pred CeeeCCCCCCCHHHHHHHHHHHHHHhCCCCCCCH-----HHHHHHHHHHhhcCCCcccccccccc
Q 021275 1 MRFSESRKNASQDDLKKAYRKAAIKNHPDKGGDP-----EKFKELAQAYEVLSDPEKREIYDQYG 60 (315)
Q Consensus 1 y~vLgv~~~a~~~~ik~ayr~la~~~hPd~~~~~-----~~f~~i~~Ay~~L~d~~~R~~YD~~g 60 (315)
|+||||+++|+..||++|||++|++||||+++.+ ++|+.|++||++|+|+.+|+.||+++
T Consensus 9 y~iLgv~~~as~~eik~ayrkla~~~HPD~~~~~~~~a~~~f~~i~~Ay~vLsd~~~r~~yd~~~ 73 (237)
T COG2214 9 YEILGVPPNASLEEIKKAYRKLALKYHPDRNPGDPKVAEEKFKEINEAYEILSDPERRAEYDKIG 73 (237)
T ss_pred HHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchhHHHHHHHHHHHHHHHhhCHHHHHHhhhhc
Confidence 7899999999999999999999999999998742 89999999999999999999999973
No 45
>KOG0717 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.66 E-value=3.1e-17 Score=154.15 Aligned_cols=65 Identities=42% Similarity=0.710 Sum_probs=60.3
Q ss_pred CeeeCCCCCCCHHHHHHHHHHHHHHhCCCCCCCH-----HHHHHHHHHHhhcCCCccccccccccccccc
Q 021275 1 MRFSESRKNASQDDLKKAYRKAAIKNHPDKGGDP-----EKFKELAQAYEVLSDPEKREIYDQYGEDALK 65 (315)
Q Consensus 1 y~vLgv~~~a~~~~ik~ayr~la~~~hPd~~~~~-----~~f~~i~~Ay~~L~d~~~R~~YD~~g~~~~~ 65 (315)
|+||||.++|++.+||++||+||++||||+||+. +.|+.|+.||+|||||..|+-||..-+.-|.
T Consensus 11 YE~L~v~~~a~d~eik~~YRklALq~HPDknpd~ieeat~~F~~i~aAYeVLSdp~eR~wyd~hreqil~ 80 (508)
T KOG0717|consen 11 YEVLGVERDADDDEIKKNYRKLALQYHPDKNPDRIEEATQQFQLIQAAYEVLSDPQERAWYDSHREQILR 80 (508)
T ss_pred HHHhcccccCCHHHHHHHHHHHHHhhCCCCCCccHHHHHHHHHHHHHHHHHhcChHhhhhHHHHHHHHhc
Confidence 8999999999999999999999999999999875 7999999999999999999999987665443
No 46
>PF00226 DnaJ: DnaJ domain; InterPro: IPR001623 The prokaryotic heat shock protein DnaJ interacts with the chaperone hsp70-like DnaK protein []. Structurally, the DnaJ protein consists of an N-terminal conserved domain (called 'J' domain) of about 70 amino acids, a glycine-rich region ('G' domain') of about 30 residues, a central domain containing four repeats of a CXXCXGXG motif ('CRR' domain) and a C-terminal region of 120 to 170 residues. Such a structure is shown in the following schematic representation: +------------+-+-------+-----+-----------+--------------------------------+ | N-terminal | | Gly-R | | CXXCXGXG | C-terminal | +------------+-+-------+-----+-----------+--------------------------------+ It is thought that the 'J' domain of DnaJ mediates the interaction with the dnaK protein and consists of four helices, the second of which has a charged surface that includes at least one pair of basic residues that are essential for interaction with the ATPase domain of Hsp70. The J- and CRR-domains are found in many prokaryotic and eukaryotic proteins [], either together or separately. In yeast, J-domains have been classified into 3 groups; the class III proteins are functionally distinct and do not appear to act as molecular chaperones []. ; GO: 0031072 heat shock protein binding; PDB: 2GUZ_C 2L6L_A 1HDJ_A 2EJ7_A 1FPO_C 2CUG_A 2QSA_A 2OCH_A 3BVO_B 3APQ_A ....
Probab=99.64 E-value=5.9e-17 Score=115.95 Aligned_cols=57 Identities=44% Similarity=0.756 Sum_probs=53.8
Q ss_pred CeeeCCCCCCCHHHHHHHHHHHHHHhCCCCCCC-H----HHHHHHHHHHhhcCCCccccccc
Q 021275 1 MRFSESRKNASQDDLKKAYRKAAIKNHPDKGGD-P----EKFKELAQAYEVLSDPEKREIYD 57 (315)
Q Consensus 1 y~vLgv~~~a~~~~ik~ayr~la~~~hPd~~~~-~----~~f~~i~~Ay~~L~d~~~R~~YD 57 (315)
|+||||+++|+.++|++||+++++++|||+++. . +.|..|++||++|+||.+|+.||
T Consensus 3 y~iLgl~~~~~~~eik~~y~~l~~~~HPD~~~~~~~~~~~~~~~i~~Ay~~L~~~~~R~~YD 64 (64)
T PF00226_consen 3 YEILGLPPDASDEEIKKAYRRLSKQYHPDKNSGDEAEAEEKFARINEAYEILSDPERRRRYD 64 (64)
T ss_dssp HHHCTSTTTSSHHHHHHHHHHHHHHTSTTTGTSTHHHHHHHHHHHHHHHHHHHSHHHHHHHH
T ss_pred HHHCCCCCCCCHHHHHHHHHhhhhccccccchhhhhhhhHHHHHHHHHHHHhCCHHHHHhcC
Confidence 789999999999999999999999999999764 3 69999999999999999999998
No 47
>KOG0719 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.64 E-value=6.4e-17 Score=139.97 Aligned_cols=62 Identities=40% Similarity=0.733 Sum_probs=58.1
Q ss_pred CeeeCCCCCCCHHHHHHHHHHHHHHhCCCCCCCH------HHHHHHHHHHhhcCCCcccccccccccc
Q 021275 1 MRFSESRKNASQDDLKKAYRKAAIKNHPDKGGDP------EKFKELAQAYEVLSDPEKREIYDQYGED 62 (315)
Q Consensus 1 y~vLgv~~~a~~~~ik~ayr~la~~~hPd~~~~~------~~f~~i~~Ay~~L~d~~~R~~YD~~g~~ 62 (315)
|+||||.++|+..+|++||++||++||||+++.. ++|++++.||+||+|.++|+.||+.|.-
T Consensus 17 YevLGVer~a~~~eIrkAY~klal~~HPDk~~eed~~ea~~kFq~l~k~y~iLsDeekR~~YDetG~i 84 (264)
T KOG0719|consen 17 YEVLGVERDATDKEIRKAYHKLALRLHPDKNHEEDKVEATEKFQQLQKAYQILSDEEKRAVYDETGSI 84 (264)
T ss_pred HHHhhhcccCCHHHHHHHHHHHHHHhCCCcchhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHhccCCC
Confidence 7899999999999999999999999999999643 7999999999999999999999998853
No 48
>PRK14288 chaperone protein DnaJ; Provisional
Probab=99.63 E-value=8.7e-16 Score=146.42 Aligned_cols=137 Identities=23% Similarity=0.507 Sum_probs=90.8
Q ss_pred eeeeeeec---cccceeeEeeceeeEEccCCCCCCcccC------CceecCCCcCCceEEEEEecCCcceeEeeeeCCCC
Q 021275 109 PLKVSLED---LYNGTSKKLSLSRNVICTKCKGKGSKSG------ASMKCSGCQGSGMKVSIRHLGPSMIQQMQHPCNEC 179 (315)
Q Consensus 109 ~~~~~l~e---~~~G~~~~~~~~~~~~C~~C~G~G~~~~------~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~~C~~C 179 (315)
++.++... .|.|....- .....|+.|+|+|.... ...+|+.|+|+| +.+..+|+.|
T Consensus 134 ~i~~~r~~~C~~C~G~G~~~--~~~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G-------------~~~~~~C~~C 198 (369)
T PRK14288 134 TIKVQYQSVCESCDGTGAKD--KALETCKQCNGQGQVFMRQGFMSFAQTCGACQGKG-------------KIIKTPCQAC 198 (369)
T ss_pred EEEEEeeccCCCCCCcccCC--CCCcCCCCCCCCcEEEEEeceEEEEEecCCCCCCc-------------eEccccCccC
Confidence 34444444 455655432 24578999999997532 235799999999 4457889999
Q ss_pred CCCceEeCCC----------------------CCCCcc-CCceEEEE---------------------------------
Q 021275 180 KGTGETINDK----------------------DRCPQC-KGEKVIQE--------------------------------- 203 (315)
Q Consensus 180 ~G~G~~~~~~----------------------~~C~~C-~G~g~~~~--------------------------------- 203 (315)
+|.|.+.... ..-... .|.=++..
T Consensus 199 ~G~g~v~~~~~l~V~IP~G~~~G~~i~l~g~G~~~~~~~~GDL~v~i~v~~h~~f~R~G~DL~~~~~Isl~eAllG~~i~ 278 (369)
T PRK14288 199 KGKTYILKDEEIDAIIPEGIDDQNRMVLKNKGNEYEKGKRGDLYLEARVKEDEHFKREGCDLFIEAPVFFTTIALGHTIK 278 (369)
T ss_pred CCcceEEEEEEEEEecCCCCCCCCEEEEccCccCCCCCCCCCEEEEEEEEECCCcEEeCCEEEEEEecCHHHHhcCCEEE
Confidence 9998653300 000000 01100000
Q ss_pred -----eEEEEEEecccccCCcEEEEcCCcCCCCCC-CccCEEEEEEEecCCCcEEeCCcEEEE
Q 021275 204 -----KKVLEVIVEKGMQNGQKITFPGEADEAPDT-VTGDIVFVLQQKEHPKFKRKGDDLFVE 260 (315)
Q Consensus 204 -----~~~~~v~Ip~G~~~G~~i~l~g~G~~~~~~-~~GDL~v~i~v~~~~~f~r~g~dL~~~ 260 (315)
...++|+||+++++|++++|+|+|++.++. ..|||||+|+|..|+.|+.++..|+.+
T Consensus 279 v~tLdG~~l~i~i~~~~~~g~~~~i~g~G~p~~~~~~~GDL~v~~~v~~P~~ls~~q~~~l~~ 341 (369)
T PRK14288 279 VPSLKGDELELKIPRNARDRQTFAFRNEGVKHPESSYRGSLIVELQVIYPKSLNKEQQELLEK 341 (369)
T ss_pred eecCCCCEEEEEeCCCCCCCcEEEEcCCCCCCCCCCCCCCEEEEEEEECCCCCCHHHHHHHHH
Confidence 014679999999999999999999997543 469999999999998887666544433
No 49
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.62 E-value=4e-16 Score=142.62 Aligned_cols=64 Identities=50% Similarity=0.738 Sum_probs=58.8
Q ss_pred CeeeCCCCCCCHHHHHHHHHHHHHHhCCCCCCCH-------HHHHHHHHHHhhcCCCccccccccccccccc
Q 021275 1 MRFSESRKNASQDDLKKAYRKAAIKNHPDKGGDP-------EKFKELAQAYEVLSDPEKREIYDQYGEDALK 65 (315)
Q Consensus 1 y~vLgv~~~a~~~~ik~ayr~la~~~hPd~~~~~-------~~f~~i~~Ay~~L~d~~~R~~YD~~g~~~~~ 65 (315)
|+||||.++|+..||.+|||+||.+||||...++ ++|-.|..|-|||+||++|+.||. |++.+.
T Consensus 397 YKILGVkRnAsKqEI~KAYRKlAqkWHPDNFqdEeEKKkAEKKFIDIAAAKEVLsd~EkRrqFDn-GeDPLD 467 (504)
T KOG0624|consen 397 YKILGVKRNASKQEITKAYRKLAQKWHPDNFQDEEEKKKAEKKFIDIAAAKEVLSDPEKRRQFDN-GEDPLD 467 (504)
T ss_pred HHHhhhcccccHHHHHHHHHHHHHhcCCccccCHHHHHHHHHhhhhHHHHHHhhcCHHHHhhccC-CCCCCC
Confidence 7999999999999999999999999999998775 589999999999999999999997 566553
No 50
>PRK14282 chaperone protein DnaJ; Provisional
Probab=99.56 E-value=7.4e-15 Score=140.16 Aligned_cols=139 Identities=22% Similarity=0.355 Sum_probs=94.9
Q ss_pred eeeeeeecc---ccceeeEeeceeeEEccCCCCCCcccC----------CceecCCCcCCceEEEEEecCCcceeEeeee
Q 021275 109 PLKVSLEDL---YNGTSKKLSLSRNVICTKCKGKGSKSG----------ASMKCSGCQGSGMKVSIRHLGPSMIQQMQHP 175 (315)
Q Consensus 109 ~~~~~l~e~---~~G~~~~~~~~~~~~C~~C~G~G~~~~----------~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~~ 175 (315)
.+.++.... |.|+... .......|+.|+|+|.... ...+|+.|+|+| +.+..+
T Consensus 146 ~i~~~r~~~C~~C~G~G~~-~~~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G-------------~~~~~~ 211 (369)
T PRK14282 146 PVEYDRYETCPHCGGTGVE-PGSGYVTCPKCHGTGRIREERRSFFGVFVSERTCERCGGTG-------------KIPGEY 211 (369)
T ss_pred EEEeeecccCCCCCccCCC-CCCCCcCCCCCCCcCEEEEEEEccCcceEEEEECCCCCCcc-------------eeCCCC
Confidence 344444444 4555443 2234578999999997542 235799999999 445788
Q ss_pred CCCCCCCceEeCC-----CCCCCcc-------------------CCc---------------------------------
Q 021275 176 CNECKGTGETIND-----KDRCPQC-------------------KGE--------------------------------- 198 (315)
Q Consensus 176 C~~C~G~G~~~~~-----~~~C~~C-------------------~G~--------------------------------- 198 (315)
|+.|+|.|.+... .-+=-.- .|.
T Consensus 212 C~~C~G~g~v~~~~~l~V~Ip~G~~~G~~i~~~g~G~~~~~~~~~GDl~i~i~v~~h~~F~r~G~DL~~~~~Isl~eAl~ 291 (369)
T PRK14282 212 CHECGGSGRIRRRVRTTVKIPAGVEDGTVLRITGGGNAGYYGGPYGDLYVIVRVRPDPRFKRSGSDLIYDVTIDYLQAIL 291 (369)
T ss_pred CCCCCCceeEEEEEEEEEEeCCCCCCCCEEEEecccCCCCCCCCCCCEEEEEEEecCCcEEEecCCEEEEEEeCHHHHhC
Confidence 9999999754320 0000000 011
Q ss_pred eEEEE-----eEEEEEEecccccCCcEEEEcCCcCCCC-CCCccCEEEEEEEecCCCcEEeCCcEEEEE
Q 021275 199 KVIQE-----KKVLEVIVEKGMQNGQKITFPGEADEAP-DTVTGDIVFVLQQKEHPKFKRKGDDLFVEH 261 (315)
Q Consensus 199 g~~~~-----~~~~~v~Ip~G~~~G~~i~l~g~G~~~~-~~~~GDL~v~i~v~~~~~f~r~g~dL~~~~ 261 (315)
|.... ...++|+||+|+++|++++|+|+|++.. ++.+|||||+|+|..|+.|++++.+|+.++
T Consensus 292 G~~~~i~~ldG~~i~v~Ip~g~~~g~~iri~GkG~p~~~~~~~GDL~V~~~v~~P~~l~~~~~~ll~~l 360 (369)
T PRK14282 292 GTTVEVPLPEGGTTMLKIPPGTQPETVFRLKGKGLPNMRYGRRGDLIVNVHVEIPKRLSREERKLLKEL 360 (369)
T ss_pred CCEEEEeCCCCcEEEEEeCCCcCCCCEEEECCCCCCCCCCCCCCCEEEEEEEECCCCCCHHHHHHHHHH
Confidence 00000 1146799999999999999999999863 456899999999999999999998887653
No 51
>smart00271 DnaJ DnaJ molecular chaperone homology domain.
Probab=99.54 E-value=1e-14 Score=102.77 Aligned_cols=52 Identities=58% Similarity=0.846 Sum_probs=48.3
Q ss_pred CeeeCCCCCCCHHHHHHHHHHHHHHhCCCCCCC--H---HHHHHHHHHHhhcCCCcc
Q 021275 1 MRFSESRKNASQDDLKKAYRKAAIKNHPDKGGD--P---EKFKELAQAYEVLSDPEK 52 (315)
Q Consensus 1 y~vLgv~~~a~~~~ik~ayr~la~~~hPd~~~~--~---~~f~~i~~Ay~~L~d~~~ 52 (315)
|+||||+++++.++|++||++|++++|||++++ + +.|++|++||++|+||.+
T Consensus 4 y~vLgl~~~~~~~~ik~ay~~l~~~~HPD~~~~~~~~~~~~~~~l~~Ay~~L~~~~~ 60 (60)
T smart00271 4 YEILGVPRDASLDEIKKAYRKLALKYHPDKNPGDKEEAEEKFKEINEAYEVLSDPEK 60 (60)
T ss_pred HHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchHHHHHHHHHHHHHHHHHcCCCC
Confidence 789999999999999999999999999999984 2 899999999999999854
No 52
>KOG0721 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.54 E-value=4.4e-15 Score=127.57 Aligned_cols=63 Identities=38% Similarity=0.644 Sum_probs=58.9
Q ss_pred CeeeCCCCCCCHHHHHHHHHHHHHHhCCCCCCC----HHHHHHHHHHHhhcCCCccccccccccccc
Q 021275 1 MRFSESRKNASQDDLKKAYRKAAIKNHPDKGGD----PEKFKELAQAYEVLSDPEKREIYDQYGEDA 63 (315)
Q Consensus 1 y~vLgv~~~a~~~~ik~ayr~la~~~hPd~~~~----~~~f~~i~~Ay~~L~d~~~R~~YD~~g~~~ 63 (315)
|+||||+++||++|||+|||+|++++|||++++ ++.|.+|++||+.|+|+..|..|..||+..
T Consensus 102 yEILGl~pgas~~eIKkaYR~LSik~HPDK~~~~~~~e~~~~~I~KAY~aLTD~~sreN~ekYG~PD 168 (230)
T KOG0721|consen 102 YEILGLDPGASEKEIKKAYRRLSIKYHPDKQPPEEGDEEFFEAIAKAYQALTDKKSRENWEKYGNPD 168 (230)
T ss_pred HHhhCCCCCCCHHHHHHHHHHhhhhhCCCcCCCcchhHHHHHHHHHHHHHhcchhhHHHHHHhCCCC
Confidence 789999999999999999999999999999765 278999999999999999999999999754
No 53
>PRK14298 chaperone protein DnaJ; Provisional
Probab=99.54 E-value=4.6e-15 Score=141.80 Aligned_cols=138 Identities=20% Similarity=0.371 Sum_probs=94.4
Q ss_pred eeeeeeecc---ccceeeEeeceeeEEccCCCCCCcccC----------CceecCCCcCCceEEEEEecCCcceeEeeee
Q 021275 109 PLKVSLEDL---YNGTSKKLSLSRNVICTKCKGKGSKSG----------ASMKCSGCQGSGMKVSIRHLGPSMIQQMQHP 175 (315)
Q Consensus 109 ~~~~~l~e~---~~G~~~~~~~~~~~~C~~C~G~G~~~~----------~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~~ 175 (315)
.+.++.... |.|...+ .-.....|+.|+|+|.... ...+|+.|+|+|. .+..+
T Consensus 135 ~i~~~r~~~C~~C~G~G~~-~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~-------------~~~~~ 200 (377)
T PRK14298 135 DIDVPRAERCSTCSGTGAK-PGTSPKRCPTCGGTGQVTTTRSTPLGQFVTTTTCSTCHGRGQ-------------VIESP 200 (377)
T ss_pred EEEEEeeccCCCCCCCccc-CCCCCCcCCCCCCccEEEEEEecCceeEEEEEeCCCCCCCCc-------------ccCCC
Confidence 344444444 4555443 2234478999999997532 2367999999993 45788
Q ss_pred CCCCCCCceEeCCCCCCCc------cC-------------------Cc--------------------------------
Q 021275 176 CNECKGTGETINDKDRCPQ------CK-------------------GE-------------------------------- 198 (315)
Q Consensus 176 C~~C~G~G~~~~~~~~C~~------C~-------------------G~-------------------------------- 198 (315)
|+.|+|+|.+... ..... =. |.
T Consensus 201 C~~C~G~g~v~~~-~~l~V~IppG~~~G~~i~~~g~G~~~~~~~~~GDL~i~i~v~~h~~F~R~G~DL~~~~~Isl~eAl 279 (377)
T PRK14298 201 CPVCSGTGKVRKT-RKITVNVPAGADSGLRLKLSGEGEAGSPGAPSGDLYIVLHVKEHDYFERVGDDIISEIPISFTQAA 279 (377)
T ss_pred CCCCCCccEEEEE-EEEEecCCCCCCCCCEEEEecccCCCCCCCCCcCEEEEEEEecCCCeEEEcCcEEEEEEeCHHHHh
Confidence 9999999875431 00000 00 11
Q ss_pred -eEEEE----eEEEEEEecccccCCcEEEEcCCcCCCC-CCCccCEEEEEEEecCCCcEEeCCcEEEEE
Q 021275 199 -KVIQE----KKVLEVIVEKGMQNGQKITFPGEADEAP-DTVTGDIVFVLQQKEHPKFKRKGDDLFVEH 261 (315)
Q Consensus 199 -g~~~~----~~~~~v~Ip~G~~~G~~i~l~g~G~~~~-~~~~GDL~v~i~v~~~~~f~r~g~dL~~~~ 261 (315)
|.... ...++|+||+|+++|++++|+|+|++.. +...|||||+|+|..|+.|++++.+|+.++
T Consensus 280 ~G~~~~i~tldG~i~v~ip~g~~~g~~lri~g~G~p~~~~~~~GDL~V~~~V~~P~~ls~~~~~ll~~l 348 (377)
T PRK14298 280 LGADIMVPTLYGKVKMNIPPGTQTHSVFRLKDKGMPRLHGHGKGDQLVKVIVKTPTKLTQEQKELLREF 348 (377)
T ss_pred CCCeEEEecCCCCEEEEeCCCcccCCEEEECCCCCCCCCCCCCCCEEEEEEEECCCCCCHHHHHHHHHH
Confidence 00000 0135699999999999999999999864 346799999999999999999988877664
No 54
>PRK14285 chaperone protein DnaJ; Provisional
Probab=99.53 E-value=1.8e-14 Score=137.26 Aligned_cols=138 Identities=21% Similarity=0.452 Sum_probs=94.2
Q ss_pred eeeeeeecc---ccceeeEeeceeeEEccCCCCCCcccC------CceecCCCcCCceEEEEEecCCcceeEeeeeCCCC
Q 021275 109 PLKVSLEDL---YNGTSKKLSLSRNVICTKCKGKGSKSG------ASMKCSGCQGSGMKVSIRHLGPSMIQQMQHPCNEC 179 (315)
Q Consensus 109 ~~~~~l~e~---~~G~~~~~~~~~~~~C~~C~G~G~~~~------~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~~C~~C 179 (315)
.+.++.... |.|+... .-.....|+.|+|+|.... ...+|+.|+|+|. .+..+|+.|
T Consensus 140 ~i~~~r~~~C~~C~G~G~~-~~~~~~~C~~C~G~G~~~~~~G~~~~~~~C~~C~G~G~-------------~~~~~C~~C 205 (365)
T PRK14285 140 NINITRNMLCESCLGKKSE-KGTSPSICNMCNGSGRVMQGGGFFRVTTTCPKCYGNGK-------------IISNPCKSC 205 (365)
T ss_pred EEEeeecccCCCCCCcccC-CCCCCccCCCccCceeEEecCceeEEeeecCCCCCccc-------------ccCCCCCCC
Confidence 344444444 5555443 2334578999999997532 2467999999993 457889999
Q ss_pred CCCceEeCCCCCCCc------cC-------------------CceEEEE-------------------------------
Q 021275 180 KGTGETINDKDRCPQ------CK-------------------GEKVIQE------------------------------- 203 (315)
Q Consensus 180 ~G~G~~~~~~~~C~~------C~-------------------G~g~~~~------------------------------- 203 (315)
+|+|.+... ..... =. |.=++..
T Consensus 206 ~G~g~v~~~-~~~~V~Ip~G~~~G~~i~~~g~G~~~~~~~~~GDL~v~i~v~~h~~f~R~G~dL~~~~~Isl~eAl~G~~ 284 (365)
T PRK14285 206 KGKGSLKKK-ETIELKIPAGIDDNQQIKMRGKGSVNPDNQQYGDLYIKILIKPHKIFKRNGKDLYATLPISFTQAALGKE 284 (365)
T ss_pred CCCCEEecc-EEEEEEECCCCCCCCEEEEeeccccCCCCCCCCCEEEEEEEecCCCeEEeccceEEEEecCHHHHhCCCE
Confidence 999865431 00000 00 1100000
Q ss_pred -------eEEEEEEecccccCCcEEEEcCCcCCCCCC-CccCEEEEEEEecCCCcEEeCCcEEEEE
Q 021275 204 -------KKVLEVIVEKGMQNGQKITFPGEADEAPDT-VTGDIVFVLQQKEHPKFKRKGDDLFVEH 261 (315)
Q Consensus 204 -------~~~~~v~Ip~G~~~G~~i~l~g~G~~~~~~-~~GDL~v~i~v~~~~~f~r~g~dL~~~~ 261 (315)
...++|+||+|+++|++|+|+|+|++.++. ..|||||+|+|+.|+.|++++..|+.++
T Consensus 285 ~~i~tldG~~v~V~Ip~g~~~g~~irl~GkG~p~~~~~~~GDL~V~~~v~~P~~l~~~q~~~l~~l 350 (365)
T PRK14285 285 IKIQTIASKKIKIKIPKGTENDEQIIIKNEGMPILHTEKFGNLILIIKIKTPKNLNSNAIKLLENL 350 (365)
T ss_pred EEEECCCCCEEEEEeCCCcCCCcEEEECCCCccCCCCCCCCCEEEEEEEECCCCCCHHHHHHHHHH
Confidence 015679999999999999999999987543 4699999999999999998887766553
No 55
>PRK14277 chaperone protein DnaJ; Provisional
Probab=99.53 E-value=8e-15 Score=140.68 Aligned_cols=137 Identities=24% Similarity=0.452 Sum_probs=89.0
Q ss_pred eeeeeeecc---ccceeeEeeceeeEEccCCCCCCcccC----------CceecCCCcCCceEEEEEecCCcceeEeeee
Q 021275 109 PLKVSLEDL---YNGTSKKLSLSRNVICTKCKGKGSKSG----------ASMKCSGCQGSGMKVSIRHLGPSMIQQMQHP 175 (315)
Q Consensus 109 ~~~~~l~e~---~~G~~~~~~~~~~~~C~~C~G~G~~~~----------~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~~ 175 (315)
++.++.... |.|.... .-.....|+.|+|+|.... ...+|+.|+|+| +.+..+
T Consensus 149 ~v~~~r~~~C~~C~G~G~~-~~~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G-------------~~~~~~ 214 (386)
T PRK14277 149 EIEVERFEKCDVCKGSGAK-PGSKPVTCPVCHGTGQVRTRQNTPFGRIVNIRTCDRCHGEG-------------KIITDP 214 (386)
T ss_pred EEEEEeeccCCCCCCCCcC-CCCCCccCCCCCCEEEEEEEEeccCceEEEEEECCCCCcce-------------eeccCC
Confidence 344444444 4554433 2233578999999997532 235799999999 345788
Q ss_pred CCCCCCCceEeCCCCCCCc------c-------------------CCceEEEE---------------------------
Q 021275 176 CNECKGTGETINDKDRCPQ------C-------------------KGEKVIQE--------------------------- 203 (315)
Q Consensus 176 C~~C~G~G~~~~~~~~C~~------C-------------------~G~g~~~~--------------------------- 203 (315)
|+.|+|+|.+...+ .... - .|.=++..
T Consensus 215 C~~C~G~g~v~~~~-~l~V~Ip~G~~~G~~i~~~g~G~~~~~~~~~GDL~v~i~v~~h~~F~R~G~DL~~~~~Isl~eAl 293 (386)
T PRK14277 215 CNKCGGTGRIRRRR-KIKVNIPAGIDDGQMITLRGEGEPGIKGGPNGDLYIVIKVKPHPLFKREGYNVYLEMPITFTDAA 293 (386)
T ss_pred CCCCCCCcEEeeee-EEEEecCCCccCCcEEEEccccccCCCCCCCccEEEEEEEecCCCeEEecCCEEEEEEcCHHHHh
Confidence 99999998753310 0000 0 01100000
Q ss_pred ----------eEEEEEEecccccCCcEEEEcCCcCCCC-CCCccCEEEEEEEecCCCcEEeCCcEEEE
Q 021275 204 ----------KKVLEVIVEKGMQNGQKITFPGEADEAP-DTVTGDIVFVLQQKEHPKFKRKGDDLFVE 260 (315)
Q Consensus 204 ----------~~~~~v~Ip~G~~~G~~i~l~g~G~~~~-~~~~GDL~v~i~v~~~~~f~r~g~dL~~~ 260 (315)
...++|.||+|+++|++++|+|+|++.. +...|||||+|+|.-|+.++.+..+|+.+
T Consensus 294 ~G~~~~i~tldG~~~v~ip~g~~~g~~~ri~g~G~p~~~~~~~GDL~v~~~V~~P~~Ls~~qk~~l~~ 361 (386)
T PRK14277 294 LGGEIEIPTLDGKVKFTIPEGTQTGTKFRLRGKGIPHLRGRGRGDQIVKVYIEVPKKLTEKQKELLRE 361 (386)
T ss_pred CCCEEEEEcCCCCEEEEECCCCCCCCEEEECCCCCCCCCCCCCCCEEEEEEEEeCCCCCHHHHHHHHH
Confidence 0035689999999999999999999864 34579999999999887666555444433
No 56
>PRK14290 chaperone protein DnaJ; Provisional
Probab=99.51 E-value=2.3e-14 Score=136.61 Aligned_cols=138 Identities=20% Similarity=0.420 Sum_probs=94.7
Q ss_pred eeeeeeecc---ccceeeEeeceeeEEccCCCCCCcccC----------CceecCCCcCCceEEEEEecCCcceeEeeee
Q 021275 109 PLKVSLEDL---YNGTSKKLSLSRNVICTKCKGKGSKSG----------ASMKCSGCQGSGMKVSIRHLGPSMIQQMQHP 175 (315)
Q Consensus 109 ~~~~~l~e~---~~G~~~~~~~~~~~~C~~C~G~G~~~~----------~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~~ 175 (315)
.+.+..... |.|....- .....|+.|+|+|.... ...+|+.|+|.|. .++.+
T Consensus 143 ~i~~~r~~~C~~C~G~g~~~--~~~~~C~~C~G~G~~~~~~~~g~~~~~~~~~C~~C~G~G~-------------~~~~~ 207 (365)
T PRK14290 143 RIKYRRNAMCPDCSGTGAKN--GKLITCPTCHGTGQQRIVRGQGFFRMVTVTTCRTCGGRGR-------------IPEEK 207 (365)
T ss_pred EEEeeecccCCCCccccCCC--CCCccCCCCCCcCEEEEEeccCeEEEEEEEeCCCCCCcee-------------EccCC
Confidence 344444444 55554432 24578999999997532 1357999999994 45789
Q ss_pred CCCCCCCceEeCCC---------------------CCCCc-cCCc---------------------------------eE
Q 021275 176 CNECKGTGETINDK---------------------DRCPQ-CKGE---------------------------------KV 200 (315)
Q Consensus 176 C~~C~G~G~~~~~~---------------------~~C~~-C~G~---------------------------------g~ 200 (315)
|+.|+|+|.+.... -.... =.|. |.
T Consensus 208 C~~C~G~g~v~~~~~~~V~Ip~G~~~G~~i~~~g~G~~~~~~~GDL~v~v~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~ 287 (365)
T PRK14290 208 CPRCNGTGTVVVNEDISVKIPKGATDNLRLRVKGKGQSYGGRTGDLYVVLRVNNDPNIQRINDDLYVDQKINFPQAALGG 287 (365)
T ss_pred CCCCCCceeEEEeeEEEEEECCCCCCCcEEEEccccCCCCCCCCCEEEEEEEcCCCCEEEecCCEEEEEEeCHHHHhCCC
Confidence 99999997753300 00000 0011 00
Q ss_pred E-E---EeEEEEEEecccccCCcEEEEcCCcCCCCC-CCccCEEEEEEEecCCCcEEeCCcEEEEE
Q 021275 201 I-Q---EKKVLEVIVEKGMQNGQKITFPGEADEAPD-TVTGDIVFVLQQKEHPKFKRKGDDLFVEH 261 (315)
Q Consensus 201 ~-~---~~~~~~v~Ip~G~~~G~~i~l~g~G~~~~~-~~~GDL~v~i~v~~~~~f~r~g~dL~~~~ 261 (315)
. . ...+++|+||+|+++|++|+|+|+|++.++ ..+|||||+|+|..|+.|++++.+|+.++
T Consensus 288 ~~~I~~~~g~i~V~Ip~g~~~g~~iri~g~G~p~~~~~~~GDL~V~~~V~~P~~l~~~~~~ll~~~ 353 (365)
T PRK14290 288 EIEIKLFREKYNLKIPEGTQPGEVLKIKGAGMPHLNGHGSGDLLVRINVEVPKRLTSKQKELIREF 353 (365)
T ss_pred EEEEEcCCceEEEEECCccCCCcEEEECCCCCCCCCCCCCCCEEEEEEEECCCCCCHHHHHHHHHH
Confidence 0 0 011467999999999999999999998743 46899999999999999999998887764
No 57
>PRK14294 chaperone protein DnaJ; Provisional
Probab=99.51 E-value=2.2e-14 Score=136.77 Aligned_cols=138 Identities=21% Similarity=0.446 Sum_probs=94.8
Q ss_pred eeeeeeecc---ccceeeEeeceeeEEccCCCCCCcccC------CceecCCCcCCceEEEEEecCCcceeEeeeeCCCC
Q 021275 109 PLKVSLEDL---YNGTSKKLSLSRNVICTKCKGKGSKSG------ASMKCSGCQGSGMKVSIRHLGPSMIQQMQHPCNEC 179 (315)
Q Consensus 109 ~~~~~l~e~---~~G~~~~~~~~~~~~C~~C~G~G~~~~------~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~~C~~C 179 (315)
.+.++.... |.|.... .-.....|+.|+|+|.... ...+|+.|+|+| +.+..+|+.|
T Consensus 138 ~i~~~r~~~C~~C~G~G~~-~~~~~~~C~~C~G~G~~~~~~G~~~~~~~C~~C~G~G-------------~~~~~~C~~C 203 (366)
T PRK14294 138 EIRIQKLETCEECHGSGCE-PGTSPTTCPQCGGSGQVTQSQGFFSIRTTCPRCRGMG-------------KVIVSPCKTC 203 (366)
T ss_pred EEEeeecccCCCCCCcccc-CCCCcccCCCcCCeEEEEEEeeeEEEEeeCCCCCCcC-------------eecCcCCCCC
Confidence 344444444 4554443 2233578999999997542 246799999999 4457889999
Q ss_pred CCCceEeCCCCCCCccC-------------------------Cc---------------------------------eEE
Q 021275 180 KGTGETINDKDRCPQCK-------------------------GE---------------------------------KVI 201 (315)
Q Consensus 180 ~G~G~~~~~~~~C~~C~-------------------------G~---------------------------------g~~ 201 (315)
+|.|.+... .....=. |. |..
T Consensus 204 ~G~g~v~~~-~~l~V~Ip~G~~~G~~i~~~g~G~~~~~~~~~GDl~v~i~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~ 282 (366)
T PRK14294 204 HGQGRVRVS-KTVQVKIPAGVDTGSRLRLRGEGEAGVRGGPPGDLYVFLTVEPHEFFERDGNDVHCKVPISFVQAALGAQ 282 (366)
T ss_pred CCceEeecc-eeEEEecCCCCcCCcEEEEccCccCCCCCCCCCcEEEEEEEccCCcceecCCCEEEEEEeCHHHHhCCCe
Confidence 999876431 1111100 11 000
Q ss_pred EE----eEEEEEEecccccCCcEEEEcCCcCCCCC-CCccCEEEEEEEecCCCcEEeCCcEEEEE
Q 021275 202 QE----KKVLEVIVEKGMQNGQKITFPGEADEAPD-TVTGDIVFVLQQKEHPKFKRKGDDLFVEH 261 (315)
Q Consensus 202 ~~----~~~~~v~Ip~G~~~G~~i~l~g~G~~~~~-~~~GDL~v~i~v~~~~~f~r~g~dL~~~~ 261 (315)
.. ...++|.||+|+++|++++|+|+|++.++ ..+|||||+|+|..|+.|++++.+|+.++
T Consensus 283 ~~i~tldG~~~v~ip~g~~~g~~iri~G~G~p~~~~~~~GDL~V~~~v~~P~~l~~~q~~ll~~~ 347 (366)
T PRK14294 283 IEVPTLEGERELKIPKGTQPGDIFRFKGKGIPSLRGGGRGDQIIEVEVKVPTRLTKKQEELLTEF 347 (366)
T ss_pred EEEECCCCcEEEEECCCcCCCCEEEECCCCCCCCCCCCCCCEEEEEEEECCCCCCHHHHHHHHHH
Confidence 00 01346999999999999999999998743 46899999999999999999888877664
No 58
>PF00684 DnaJ_CXXCXGXG: DnaJ central domain; InterPro: IPR001305 The hsp70 chaperone machine performs many diverse roles in the cell, including folding of nascent proteins, translocation of polypeptides across organelle membranes, coordinating responses to stress, and targeting selected proteins for degradation. DnaJ is a member of the hsp40 family of molecular chaperones, which is also called the J-protein family, the members of which regulate the activity of hsp70s. DnaJ (hsp40) binds to DnaK (hsp70) and stimulates its ATPase activity, generating the ADP-bound state of DnaK, which interacts stably with the polypeptide substrate []. Besides stimulating the ATPase activity of DnaK through its J-domain, DnaJ also associates with unfolded polypeptide chains and prevents their aggregation []. DnaJ consists of an N-terminal conserved domain (called 'J' domain) of about 70 amino acid residues, a glycine and phenylalanine-rich domain ('G/F' domain), a central cysteine rich domain (CR-type zinc finger) containing four repeats of a CXXCXGXG motif which can coordinate two zinc atom and a C-terminal domain (CTD) []. This entry represents the central cysteine-rich (CR) domain of DnaJ proteins. This central cysteine rich domain (CR-type zinc finger) has an overall V-shaped extended beta-hairpin topology and contains four repeats of the motif CXXCXGXG where X is any amino acid. The isolated cysteine rich domain folds in zinc dependent fashion. Each set of two repeats binds one unit of zinc. Although this domain has been implicated in substrate binding, no evidence of specific interaction between the isolated DnaJ cysteine rich domain and various hydrophobic peptides has been found [].; GO: 0031072 heat shock protein binding, 0051082 unfolded protein binding; PDB: 1NLT_A 2CTT_A 1EXK_A.
Probab=99.50 E-value=6.6e-14 Score=100.75 Aligned_cols=65 Identities=43% Similarity=0.947 Sum_probs=51.4
Q ss_pred ccCCCCCCcccC-CceecCCCcCCceEEEEEecCCcceeEeeeeCCCCCCCceEeCCCCCCCccCCce
Q 021275 133 CTKCKGKGSKSG-ASMKCSGCQGSGMKVSIRHLGPSMIQQMQHPCNECKGTGETINDKDRCPQCKGEK 199 (315)
Q Consensus 133 C~~C~G~G~~~~-~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~~C~~C~G~G~~~~~~~~C~~C~G~g 199 (315)
|+.|+|+|.... ...+|+.|+|+|+++..++ .++++++++.+|+.|+|+|+++ +.++|+.|+|+|
T Consensus 1 C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~-~~~~~~~~~~~C~~C~G~G~~i-~~~~C~~C~G~g 66 (66)
T PF00684_consen 1 CPKCNGTGAKPGKKPKTCPQCNGSGQVTRRQQ-TPGGVFQMQQTCPKCGGTGKII-EKDPCKTCKGSG 66 (66)
T ss_dssp -CCCTTTSB-STTT-EE-TTSSSSSEEEEEEE-SSSTTEEEEEE-TTTSSSSEE--TSSB-SSSTTSS
T ss_pred CCcCCCcccCCCCCCcCCcCCCCeeEEEEEEe-CCCeEEEEEEECCCCcceeeEE-CCCCCCCCCCcC
Confidence 899999999655 4678999999999998888 6667778899999999999999 569999999975
No 59
>cd06257 DnaJ DnaJ domain or J-domain. DnaJ/Hsp40 (heat shock protein 40) proteins are highly conserved and play crucial roles in protein translation, folding, unfolding, translocation, and degradation. They act primarily by stimulating the ATPase activity of Hsp70s, an important chaperonine family. Hsp40 proteins are characterized by the presence of a J domain, which mediates the interaction with Hsp70. They may contain other domains as well, and the architectures provide a means of classification.
Probab=99.50 E-value=3.2e-14 Score=98.41 Aligned_cols=49 Identities=55% Similarity=0.807 Sum_probs=46.3
Q ss_pred CeeeCCCCCCCHHHHHHHHHHHHHHhCCCCCCC----HHHHHHHHHHHhhcCC
Q 021275 1 MRFSESRKNASQDDLKKAYRKAAIKNHPDKGGD----PEKFKELAQAYEVLSD 49 (315)
Q Consensus 1 y~vLgv~~~a~~~~ik~ayr~la~~~hPd~~~~----~~~f~~i~~Ay~~L~d 49 (315)
|+||||+++++.++||++||+|+++||||+++. .+.|++|++||++|+|
T Consensus 3 y~vLgl~~~~~~~~ik~~y~~l~~~~HPD~~~~~~~~~~~~~~l~~Ay~~L~d 55 (55)
T cd06257 3 YDILGVPPDASDEEIKKAYRKLALKYHPDKNPDDPEAEEKFKEINEAYEVLSD 55 (55)
T ss_pred HHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHhcC
Confidence 789999999999999999999999999999985 2899999999999986
No 60
>PRK14279 chaperone protein DnaJ; Provisional
Probab=99.50 E-value=1.9e-14 Score=138.21 Aligned_cols=135 Identities=22% Similarity=0.474 Sum_probs=91.7
Q ss_pred eeeeeecc---ccceeeEeeceeeEEccCCCCCCcccC------CceecCCCcCCceEEEEEecCCcceeEeeeeCCCCC
Q 021275 110 LKVSLEDL---YNGTSKKLSLSRNVICTKCKGKGSKSG------ASMKCSGCQGSGMKVSIRHLGPSMIQQMQHPCNECK 180 (315)
Q Consensus 110 ~~~~l~e~---~~G~~~~~~~~~~~~C~~C~G~G~~~~------~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~~C~~C~ 180 (315)
+.++.... |.|.... .-.....|+.|+|+|.... ...+|+.|+|+| +.+..+|+.|+
T Consensus 168 v~~~~~~~C~~C~G~G~~-~~~~~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G-------------~~i~~~C~~C~ 233 (392)
T PRK14279 168 LRLTSPAPCTTCHGSGAR-PGTSPKVCPTCNGSGVISRNQGAFGFSEPCTDCRGTG-------------SIIEDPCEECK 233 (392)
T ss_pred EeeeccccCCCCcccccc-CCCCCCCCCCCcceEEEEEEecceEEEEecCCCCcee-------------EEeCCcCCCCC
Confidence 44444444 5555544 2334578999999998642 236799999999 45678899999
Q ss_pred CCceEeCCCCCCC-----------------------cc--CCceEEE---------------------------------
Q 021275 181 GTGETINDKDRCP-----------------------QC--KGEKVIQ--------------------------------- 202 (315)
Q Consensus 181 G~G~~~~~~~~C~-----------------------~C--~G~g~~~--------------------------------- 202 (315)
|.|.+... .... .. .|.=++.
T Consensus 234 G~g~v~~~-~~~~V~Ip~G~~~G~~i~~~g~G~~~~~~~~~GDL~i~i~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~ 312 (392)
T PRK14279 234 GTGVTTRT-RTINVRIPPGVEDGQRIRLAGQGEAGLRGAPSGDLYVTVHVRPDKVFGRDGDDLTVTVPVSFTELALGSTL 312 (392)
T ss_pred CCeEEEEe-eeeEEEeCCCCCCCcEEEEeCCccCCCCCCCCCCEEEEEEEecCCcceeecCcEEEEEEccHHHHcCCceE
Confidence 99876431 0110 00 1110000
Q ss_pred ----EeEEEEEEecccccCCcEEEEcCCcCCCCCCCccCEEEEEEEecCCCcEEeCCcEEE
Q 021275 203 ----EKKVLEVIVEKGMQNGQKITFPGEADEAPDTVTGDIVFVLQQKEHPKFKRKGDDLFV 259 (315)
Q Consensus 203 ----~~~~~~v~Ip~G~~~G~~i~l~g~G~~~~~~~~GDL~v~i~v~~~~~f~r~g~dL~~ 259 (315)
....++|+||+|+++|++|+|+|+|++..++.+|||||+|+|..|+.++.++..|+.
T Consensus 313 ~v~~ldg~i~v~Ip~g~~~g~~iri~g~G~p~~~~~~GDL~I~~~v~~P~~Ls~~q~~~l~ 373 (392)
T PRK14279 313 SVPTLDGPVGVKVPAGTADGRILRVRGRGVPKRSGGAGDLLVTVKVAVPPNLDGAAAEALE 373 (392)
T ss_pred EEEcCCceEEEEECCCCCCCCEEEECCCCCCCCCCCCCCEEEEEEEECCCCCCHHHHHHHH
Confidence 011467999999999999999999999766678999999999988876655544443
No 61
>PRK14301 chaperone protein DnaJ; Provisional
Probab=99.50 E-value=3.5e-14 Score=135.63 Aligned_cols=138 Identities=20% Similarity=0.460 Sum_probs=92.4
Q ss_pred eeeeeeeccc---cceeeEeeceeeEEccCCCCCCcccC------CceecCCCcCCceEEEEEecCCcceeEeeeeCCCC
Q 021275 109 PLKVSLEDLY---NGTSKKLSLSRNVICTKCKGKGSKSG------ASMKCSGCQGSGMKVSIRHLGPSMIQQMQHPCNEC 179 (315)
Q Consensus 109 ~~~~~l~e~~---~G~~~~~~~~~~~~C~~C~G~G~~~~------~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~~C~~C 179 (315)
++.++....| .|.... .-.....|+.|+|+|.... ...+|+.|+|+| +.+..+|+.|
T Consensus 138 ~i~~~r~~~C~~C~G~G~~-~~~~~~~C~~C~G~G~v~~~~G~~~~~~~C~~C~G~G-------------~~~~~~C~~C 203 (373)
T PRK14301 138 TLRIPKNVTCDDCGGSGAA-PGTSPETCRHCGGSGQVRQSQGFFQIAVPCPVCRGEG-------------RVITHPCPKC 203 (373)
T ss_pred EEEeeecccCCCCCCcccC-CCCCCcccCCccCeeEEEEEeeeEEEEEeCCCCCcee-------------eecCCCCCCC
Confidence 3444445444 454433 2234578999999997542 246799999999 4457889999
Q ss_pred CCCceEeCCC----------------------CCCCcc--CCceEEEE--------------------------------
Q 021275 180 KGTGETINDK----------------------DRCPQC--KGEKVIQE-------------------------------- 203 (315)
Q Consensus 180 ~G~G~~~~~~----------------------~~C~~C--~G~g~~~~-------------------------------- 203 (315)
+|.|.+.... ..-... .|.-++..
T Consensus 204 ~G~g~v~~~~~l~V~Ip~G~~~G~~i~~~g~G~~~~~~~~~GDLiv~i~v~~h~~f~r~G~DL~~~~~Isl~eAl~G~~~ 283 (373)
T PRK14301 204 KGSGIVQQTRELKVRIPAGVDTGSRLRLRGEGEPGVHGGPPGDLYVVITVEDDKIFQRQGQDLVVTQEISFVQAALGDRI 283 (373)
T ss_pred CCCceeccceEEEEEeCCCCcCCCEEEEeccccCCCCCCCCcCEEEEEEEEECCCceeecCcEEEEEEecHHHHhCCCeE
Confidence 9998754310 000000 01100000
Q ss_pred -----eEEEEEEecccccCCcEEEEcCCcCCCCC-CCccCEEEEEEEecCCCcEEeCCcEEEE
Q 021275 204 -----KKVLEVIVEKGMQNGQKITFPGEADEAPD-TVTGDIVFVLQQKEHPKFKRKGDDLFVE 260 (315)
Q Consensus 204 -----~~~~~v~Ip~G~~~G~~i~l~g~G~~~~~-~~~GDL~v~i~v~~~~~f~r~g~dL~~~ 260 (315)
...++|+||+|+++|++++|+|+|++..+ ..+|||||+|+|..|+.++.++.+|+.+
T Consensus 284 ~v~tldG~i~v~ip~g~~~g~~~ri~g~G~p~~~~~~~GDL~I~~~V~~P~~l~~~q~~~l~~ 346 (373)
T PRK14301 284 EVPTLDDPVTLDIPKGTQSGEVFRLRGKGLPYLGSSQKGDLLVEVSVVTPTKLTKRQEELLRE 346 (373)
T ss_pred EEecCCccEEEEECCCcCCCcEEEEcCCCCCCCCCCCCCCEEEEEEEECCCCCCHHHHHHHHH
Confidence 11366999999999999999999999743 4589999999999998887776665544
No 62
>PRK14284 chaperone protein DnaJ; Provisional
Probab=99.49 E-value=4.8e-14 Score=135.54 Aligned_cols=137 Identities=20% Similarity=0.433 Sum_probs=93.2
Q ss_pred eeeeeecc---ccceeeEeeceeeEEccCCCCCCcccC------CceecCCCcCCceEEEEEecCCcceeEeeeeCCCCC
Q 021275 110 LKVSLEDL---YNGTSKKLSLSRNVICTKCKGKGSKSG------ASMKCSGCQGSGMKVSIRHLGPSMIQQMQHPCNECK 180 (315)
Q Consensus 110 ~~~~l~e~---~~G~~~~~~~~~~~~C~~C~G~G~~~~------~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~~C~~C~ 180 (315)
+.++.... |.|+..+ .-.....|+.|+|+|.... ...+|+.|+|+| +.+..+|+.|+
T Consensus 153 i~~~r~~~C~~C~G~G~~-~~~~~~~C~~C~G~G~v~~~~G~~~~~~~C~~C~G~G-------------~~~~~~C~~C~ 218 (391)
T PRK14284 153 LLVSGYKSCDACSGSGAN-SSQGIKVCDRCKGSGQVVQSRGFFSMASTCPECGGEG-------------RVITDPCSVCR 218 (391)
T ss_pred EEEeeeccCCCCcccccC-CCCCCeecCccCCeeEEEEEeceEEEEEECCCCCCCC-------------cccCCcCCCCC
Confidence 34444444 5555544 2234578999999998532 236799999999 34578899999
Q ss_pred CCceEeCCCCCCCc------c-------------------CCc---------------------------------e---
Q 021275 181 GTGETINDKDRCPQ------C-------------------KGE---------------------------------K--- 199 (315)
Q Consensus 181 G~G~~~~~~~~C~~------C-------------------~G~---------------------------------g--- 199 (315)
|.|.+... ..-.. - .|. |
T Consensus 219 G~g~v~~~-~~l~V~Ip~G~~~G~~i~~~g~G~~~~~~~~~GDL~v~i~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~ 297 (391)
T PRK14284 219 GQGRIKDK-RSVHVHIPAGVDSGMRLKMEGYGDAGQNGAPAGDLYVFIDVEPHPVFERRGDDLILELPIGFVDAALGMKK 297 (391)
T ss_pred Ccceecce-EEEEEEECCCCCCCCEEEEeccccCCCCCCCCCCEEEEEEEecCCCceeecCCEEEEEEecHHHHhCCCeE
Confidence 99765320 00000 0 011 1
Q ss_pred EEE-E--eEEEEEEecccccCCcEEEEcCCcCCCC-CCCccCEEEEEEEecCCCcEEeCCcEEEEE
Q 021275 200 VIQ-E--KKVLEVIVEKGMQNGQKITFPGEADEAP-DTVTGDIVFVLQQKEHPKFKRKGDDLFVEH 261 (315)
Q Consensus 200 ~~~-~--~~~~~v~Ip~G~~~G~~i~l~g~G~~~~-~~~~GDL~v~i~v~~~~~f~r~g~dL~~~~ 261 (315)
.+. . ...++|+||+|+++|++++|+|+|++.. +..+|||||+|+|..|+.++.++.+|+.++
T Consensus 298 ~v~tld~g~~i~v~Ip~g~~~g~~~~i~g~G~p~~~~~~~GDL~V~~~v~~P~~l~~~q~~ll~~l 363 (391)
T PRK14284 298 EIPTLLKEGTCRLTIPEGIQSGTILKVRGQGFPNVHGKGRGDLLVRISVETPQNLSEEQKELLRQF 363 (391)
T ss_pred EEeecCCCcEEEEEECCccCCCeEEEECCCCCCCCCCCCCCcEEEEEEEECCCCCCHHHHHHHHHH
Confidence 111 1 1357799999999999999999999874 356899999999999988887776665543
No 63
>PRK14278 chaperone protein DnaJ; Provisional
Probab=99.47 E-value=1.1e-13 Score=132.51 Aligned_cols=137 Identities=23% Similarity=0.432 Sum_probs=90.9
Q ss_pred eeeeeeecc---ccceeeEeeceeeEEccCCCCCCcccC----------CceecCCCcCCceEEEEEecCCcceeEeeee
Q 021275 109 PLKVSLEDL---YNGTSKKLSLSRNVICTKCKGKGSKSG----------ASMKCSGCQGSGMKVSIRHLGPSMIQQMQHP 175 (315)
Q Consensus 109 ~~~~~l~e~---~~G~~~~~~~~~~~~C~~C~G~G~~~~----------~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~~ 175 (315)
.+.++.... |.|.... .......|+.|+|+|.... ...+|+.|+|+|. .+..+
T Consensus 133 ~i~~~~~~~C~~C~G~G~~-~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~-------------~~~~~ 198 (378)
T PRK14278 133 QVTVDTAVLCDRCHGKGTA-GDSKPVTCDTCGGRGEVQTVQRSFLGQVMTSRPCPTCRGVGE-------------VIPDP 198 (378)
T ss_pred EEEEEeeccCCCCcCccCC-CCCCceecCCccCceEEEEEEeccceeEEEEEECCCCCccce-------------eeCCC
Confidence 344444444 4555443 2334578999999997531 2357999999993 45788
Q ss_pred CCCCCCCceEeCCCCCCCc-------------------------cCCc--------------------------------
Q 021275 176 CNECKGTGETINDKDRCPQ-------------------------CKGE-------------------------------- 198 (315)
Q Consensus 176 C~~C~G~G~~~~~~~~C~~-------------------------C~G~-------------------------------- 198 (315)
|+.|+|+|.+... ..... -.|.
T Consensus 199 C~~C~G~g~v~~~-~~~~V~Ip~G~~~G~~i~~~g~G~~~~~~~~~GDL~v~i~~~~h~~F~R~G~DL~~~~~Isl~eAl 277 (378)
T PRK14278 199 CHECAGDGRVRAR-REITVKIPAGVGDGMRIRLAAQGEVGPGGGPAGDLYVEVHEQPHDVFVRDGDDLHCTVSVPMVDAA 277 (378)
T ss_pred CCCCCCceeEecc-eEEEEEECCCCCCCcEEEEccCcCCCCCCCCCCCEEEEEEECcCCCEEEcCCCEEEEEecCHHHHh
Confidence 9999999875431 00000 0011
Q ss_pred -eE---EE-E-eEEEEEEecccccCCcEEEEcCCcCCCC-CCCccCEEEEEEEecCCCcEEeCCcEEEE
Q 021275 199 -KV---IQ-E-KKVLEVIVEKGMQNGQKITFPGEADEAP-DTVTGDIVFVLQQKEHPKFKRKGDDLFVE 260 (315)
Q Consensus 199 -g~---~~-~-~~~~~v~Ip~G~~~G~~i~l~g~G~~~~-~~~~GDL~v~i~v~~~~~f~r~g~dL~~~ 260 (315)
|. +. . ...++|.||+|+++|++++|+|+|++.. ++.+|||||+|+|.-|+.++.+...|+.+
T Consensus 278 ~G~~~~i~tld~~~i~v~ip~g~~~g~~lrl~g~G~p~~~~~~~GDL~V~~~V~~P~~Ls~~qk~~l~~ 346 (378)
T PRK14278 278 LGTTVTVEAILDGPSEITIPPGTQPGSVITLRGRGMPHLRSGGRGDLHAHVEVVVPTRLDHEDIELLRE 346 (378)
T ss_pred cCCeEEEecCCCCeEEEEeCCCcCCCcEEEECCCCCCCCCCCCCCCEEEEEEEEcCCCCCHHHHHHHHH
Confidence 10 00 0 2256799999999999999999999864 45689999999999887666555544433
No 64
>PRK14286 chaperone protein DnaJ; Provisional
Probab=99.47 E-value=7.9e-14 Score=133.16 Aligned_cols=138 Identities=21% Similarity=0.442 Sum_probs=92.5
Q ss_pred eeeeeeecc---ccceeeEeeceeeEEccCCCCCCcccC------CceecCCCcCCceEEEEEecCCcceeEeeeeCCCC
Q 021275 109 PLKVSLEDL---YNGTSKKLSLSRNVICTKCKGKGSKSG------ASMKCSGCQGSGMKVSIRHLGPSMIQQMQHPCNEC 179 (315)
Q Consensus 109 ~~~~~l~e~---~~G~~~~~~~~~~~~C~~C~G~G~~~~------~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~~C~~C 179 (315)
.+.++.... |.|.... .......|+.|+|+|.... ...+|+.|+|+| +.+..+|+.|
T Consensus 144 ~i~~~r~~~C~~C~G~G~~-~~~~~~~C~~C~G~G~v~~~~G~~~~~~~C~~C~G~G-------------~~~~~~C~~C 209 (372)
T PRK14286 144 KIEIPRLESCVDCNGSGAS-KGSSPTTCPDCGGSGQIRRTQGFFSVATTCPTCRGKG-------------TVISNPCKTC 209 (372)
T ss_pred EEEeeccccCCCCcCCCcC-CCCCCccCCCCcCeEEEEEEeceEEEEEeCCCCCcee-------------eEecccCCCC
Confidence 344444444 4555443 2233478999999997532 236799999999 4457889999
Q ss_pred CCCceEeCCC----------------------CCCCc--cCCceEEEE--------------------------------
Q 021275 180 KGTGETINDK----------------------DRCPQ--CKGEKVIQE-------------------------------- 203 (315)
Q Consensus 180 ~G~G~~~~~~----------------------~~C~~--C~G~g~~~~-------------------------------- 203 (315)
+|+|.+...+ ..... -.|.-++..
T Consensus 210 ~G~g~~~~~~~l~V~Ip~G~~~G~~i~~~g~G~~~~~~~~~GDL~i~i~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~ 289 (372)
T PRK14286 210 GGQGLQEKRRTINIKIPPGVETGSRLKVSGEGEAGPNGGPHGDLYVVTHIKKHELFERQGNDLILVRKISLAQAILGAEI 289 (372)
T ss_pred CCCcEEecceEEEEEECCCCCCCCEEEECCccccCCCCCCCceEEEEEEEccCCCEEEecCCEEEEEEECHHHHhCCCEE
Confidence 9998764310 01111 112211111
Q ss_pred ------eEEEEEEecccccCCcEEEEcCCcCCCC-CCCccCEEEEEEEecCCCcEEeCCcEEEE
Q 021275 204 ------KKVLEVIVEKGMQNGQKITFPGEADEAP-DTVTGDIVFVLQQKEHPKFKRKGDDLFVE 260 (315)
Q Consensus 204 ------~~~~~v~Ip~G~~~G~~i~l~g~G~~~~-~~~~GDL~v~i~v~~~~~f~r~g~dL~~~ 260 (315)
...++|+||+|+++|++++|+|+|++.. +...|||||+|+|..|+.++.++.+|+.+
T Consensus 290 ~i~tldG~~i~v~ip~g~~~g~~~ri~G~G~P~~~~~~~GDL~V~~~V~~P~~Ls~~qk~~l~~ 353 (372)
T PRK14286 290 EVPTIDGKKAKMKIPEGTESGQVFRLKGHGMPYLGAYGKGDQHVIVKIEIPKKITRRQRELIEE 353 (372)
T ss_pred EEeCCCCCEEEEEeCCccCCCcEEEECCCCCCCCCCCCCCcEEEEEEEECCCCCCHHHHHHHHH
Confidence 1146799999999999999999999864 34679999999999888777666555443
No 65
>PRK14287 chaperone protein DnaJ; Provisional
Probab=99.47 E-value=6.3e-14 Score=133.78 Aligned_cols=138 Identities=18% Similarity=0.397 Sum_probs=92.7
Q ss_pred eeeeeeec---cccceeeEeeceeeEEccCCCCCCcccC----------CceecCCCcCCceEEEEEecCCcceeEeeee
Q 021275 109 PLKVSLED---LYNGTSKKLSLSRNVICTKCKGKGSKSG----------ASMKCSGCQGSGMKVSIRHLGPSMIQQMQHP 175 (315)
Q Consensus 109 ~~~~~l~e---~~~G~~~~~~~~~~~~C~~C~G~G~~~~----------~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~~ 175 (315)
++.++... .|.|+... .-.....|+.|+|+|.... ...+|+.|.|+|. .+..+
T Consensus 132 ~i~~~r~~~C~~C~G~G~~-~~~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~-------------~~~~~ 197 (371)
T PRK14287 132 EIEIPREETCGTCHGSGAK-PGTKPETCSHCGGSGQLNVEQNTPFGRVVNRRVCHHCEGTGK-------------IIKQK 197 (371)
T ss_pred EEEEeeeccCCCCCCcccC-CCCCCcccCCCCCEEEEEEEEecCCceEEEEEeCCCCCCCCc-------------ccccc
Confidence 44444444 45555543 3334578999999997532 2357999999994 45788
Q ss_pred CCCCCCCceEeCCCCCCCc------c-------------------CCceEEEE---------------------------
Q 021275 176 CNECKGTGETINDKDRCPQ------C-------------------KGEKVIQE--------------------------- 203 (315)
Q Consensus 176 C~~C~G~G~~~~~~~~C~~------C-------------------~G~g~~~~--------------------------- 203 (315)
|..|+|.|.+.. ...-.. = .|.=++..
T Consensus 198 C~~C~G~g~v~~-~~~l~V~Ip~G~~~G~~i~~~G~G~~~~~~~~~GDL~v~i~v~~h~~F~R~G~DL~~~~~Isl~eAl 276 (371)
T PRK14287 198 CATCGGKGKVRK-RKKINVKVPAGIDHGQQLRVSGQGEAGVNGGPPGDLYVVFNVKPHEFFERDGDDIYCEMPLTFPQVA 276 (371)
T ss_pred CCCCCCeeEEee-eEEEEEEECCcCCCCCEEEEccCCcCCCCCCCCccEEEEEEEecCCCEEEecCCeEEEEeccHHHHh
Confidence 999999876532 000000 0 01100000
Q ss_pred ----------eEEEEEEecccccCCcEEEEcCCcCCCC-CCCccCEEEEEEEecCCCcEEeCCcEEEEE
Q 021275 204 ----------KKVLEVIVEKGMQNGQKITFPGEADEAP-DTVTGDIVFVLQQKEHPKFKRKGDDLFVEH 261 (315)
Q Consensus 204 ----------~~~~~v~Ip~G~~~G~~i~l~g~G~~~~-~~~~GDL~v~i~v~~~~~f~r~g~dL~~~~ 261 (315)
...++|+||+|+++|++++|+|+|++.. +..+|||||+|+|..|+.|++++..|+.++
T Consensus 277 ~G~~~~i~~ldg~i~v~ip~g~~~g~~~ri~g~G~p~~~~~~~GDL~V~~~v~~P~~l~~~q~~ll~~l 345 (371)
T PRK14287 277 LGDEIEVPTLNGKVKLKIPAGTQTGTSFRLRGKGVPNVHGRGQGDQHVQVRVVTPKNLTEKEKELMREF 345 (371)
T ss_pred CCCEEEEEcCCCCEEEEECCCccCCcEEEEcCCCccCCCCCCCCCEEEEEEEEcCCCCCHHHHHHHHHH
Confidence 0135699999999999999999999864 346799999999999999888777665553
No 66
>PRK14300 chaperone protein DnaJ; Provisional
Probab=99.47 E-value=6.5e-14 Score=133.78 Aligned_cols=136 Identities=20% Similarity=0.452 Sum_probs=91.3
Q ss_pred eeeeeecc---ccceeeEeeceeeEEccCCCCCCcccC------CceecCCCcCCceEEEEEecCCcceeEeeeeCCCCC
Q 021275 110 LKVSLEDL---YNGTSKKLSLSRNVICTKCKGKGSKSG------ASMKCSGCQGSGMKVSIRHLGPSMIQQMQHPCNECK 180 (315)
Q Consensus 110 ~~~~l~e~---~~G~~~~~~~~~~~~C~~C~G~G~~~~------~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~~C~~C~ 180 (315)
+.++.... |.|.... .......|+.|+|+|.... ...+|+.|+|+|. .+..+|+.|+
T Consensus 140 i~~~r~~~C~~C~G~g~~-~~~~~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~-------------~~~~~C~~C~ 205 (372)
T PRK14300 140 ISFSSEVKCDTCHGSGSE-KGETVTTCDACSGVGATRMQQGFFTIEQACHKCQGNGQ-------------IIKNPCKKCH 205 (372)
T ss_pred EEeeeccccCCCCCcccC-CCCCCccCCCccCeEEEEEeeceEEEEEeCCCCCccce-------------EeCCCCCCCC
Confidence 44444444 4555443 2334578999999997532 2357999999994 4578899999
Q ss_pred CCceEeCCCCCCC-----------------------cc--CCc---------------------------------e---
Q 021275 181 GTGETINDKDRCP-----------------------QC--KGE---------------------------------K--- 199 (315)
Q Consensus 181 G~G~~~~~~~~C~-----------------------~C--~G~---------------------------------g--- 199 (315)
|+|.+... .... .- .|. |
T Consensus 206 G~g~v~~~-~~~~V~Ip~G~~~G~~i~l~g~G~~~~~~~~~GDL~v~i~v~~h~~f~R~G~Dl~~~~~Isl~~Al~G~~~ 284 (372)
T PRK14300 206 GMGRYHKQ-RNLSVNIPAGVENGTRIRHTGEGEAGIRGGNSGDLYVDIAIKPHDIYKVDGANLHCKLPISFVNAALGGEI 284 (372)
T ss_pred CceEEEee-EEEEEEECCCCCCCcEEEEeccccCCCCCCCCCCEEEEEEECCCCCeEEecCCEEEEEecCHHHHhCCCEE
Confidence 99876330 0000 00 011 0
Q ss_pred EEEE--eEEEEEEecccccCCcEEEEcCCcCCCC-CCCccCEEEEEEEecCCCcEEeCCcEEEE
Q 021275 200 VIQE--KKVLEVIVEKGMQNGQKITFPGEADEAP-DTVTGDIVFVLQQKEHPKFKRKGDDLFVE 260 (315)
Q Consensus 200 ~~~~--~~~~~v~Ip~G~~~G~~i~l~g~G~~~~-~~~~GDL~v~i~v~~~~~f~r~g~dL~~~ 260 (315)
.+.. ...++|+||+|+++|++|+|+|+|++.+ +..+|||||+|+|..|+.|+.++..|+.+
T Consensus 285 ~i~~ldg~~i~v~Ip~g~~~g~~iri~g~G~p~~~~~~~GDL~V~~~v~~P~~ls~~qk~~l~~ 348 (372)
T PRK14300 285 EVPVIEGGKVNLTIPAGTQNGDQLRLRSKGMSKMRSTIRGDMLTHIHVEVPKNLSKRQRELLEE 348 (372)
T ss_pred EEecCCCCEEEEEECCccCCCcEEEECCCCCCCCCCCCCCCEEEEEEEECCCCCCHHHHHHHHH
Confidence 0000 1257799999999999999999999874 35689999999999998877666555443
No 67
>PRK14295 chaperone protein DnaJ; Provisional
Probab=99.47 E-value=9.6e-14 Score=133.25 Aligned_cols=138 Identities=22% Similarity=0.458 Sum_probs=92.2
Q ss_pred eeeeeeec---cccceeeEeeceeeEEccCCCCCCcccC------CceecCCCcCCceEEEEEecCCcceeEeeeeCCCC
Q 021275 109 PLKVSLED---LYNGTSKKLSLSRNVICTKCKGKGSKSG------ASMKCSGCQGSGMKVSIRHLGPSMIQQMQHPCNEC 179 (315)
Q Consensus 109 ~~~~~l~e---~~~G~~~~~~~~~~~~C~~C~G~G~~~~------~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~~C~~C 179 (315)
++.++... .|.|.... .-.....|+.|+|+|.... ...+|+.|+|+| +.+..+|+.|
T Consensus 160 ~i~~~r~~~C~~C~G~G~~-~~~~~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G-------------~~~~~~C~~C 225 (389)
T PRK14295 160 PLRLTSQAPCPACSGTGAK-NGTTPRVCPTCSGTGQVSRNSGGFSLSEPCPDCKGRG-------------LIADDPCLVC 225 (389)
T ss_pred EEEeeccccCCCCcccccC-CCCCCcCCCCCCCEeEEEEEecceEEEEecCCCccee-------------EEeccCCCCC
Confidence 34444444 45555544 2334578999999997532 236799999999 4457889999
Q ss_pred CCCceEeCCC----------------------CCCCc--cCCc---------------------------------eEE-
Q 021275 180 KGTGETINDK----------------------DRCPQ--CKGE---------------------------------KVI- 201 (315)
Q Consensus 180 ~G~G~~~~~~----------------------~~C~~--C~G~---------------------------------g~~- 201 (315)
.|.|.+...+ ..... -.|. |..
T Consensus 226 ~G~g~~~~~~~l~V~Ip~G~~~G~~i~l~g~G~~~~~~~~~GDL~v~i~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~ 305 (389)
T PRK14295 226 KGSGRAKSSRTMQVRIPAGVSDGQRIRLRGKGAPGERGGPAGDLYVVVHVDPHPVFGRSGDNLTVTVPVTFPEAALGAEV 305 (389)
T ss_pred CCCceEeeeeEEEEEeCCCCCCCCEEEEcccccCCCCCCCCccEEEEEEEecCCCEEEecCCEEEEEeecHHHHhCCCeE
Confidence 9998654310 00000 0111 100
Q ss_pred EE----eEEEEEEecccccCCcEEEEcCCcCCCCCCCccCEEEEEEEecCCCcEEeCCcEEEE
Q 021275 202 QE----KKVLEVIVEKGMQNGQKITFPGEADEAPDTVTGDIVFVLQQKEHPKFKRKGDDLFVE 260 (315)
Q Consensus 202 ~~----~~~~~v~Ip~G~~~G~~i~l~g~G~~~~~~~~GDL~v~i~v~~~~~f~r~g~dL~~~ 260 (315)
.. ...++|+||+|+++|++++|+|+|++..++.+|||||+|+|.-|+.++.++..|+.+
T Consensus 306 ~I~tldG~~~~v~ip~g~~~g~~iri~G~G~p~~~~~~GDL~i~~~v~~P~~Ls~~qk~~l~~ 368 (389)
T PRK14295 306 RVPTLGGPPVTVKLPPGTPNGRVLRVRGKGAVRKDGTRGDLLVTVEVAVPKDLSGKAREALEA 368 (389)
T ss_pred EEECCCCCEEEEEECCccCCCcEEEECCCCcCCCCCCCCCEEEEEEEECCCCCCHHHHHHHHH
Confidence 00 115679999999999999999999997666789999999999888766655554443
No 68
>PRK14293 chaperone protein DnaJ; Provisional
Probab=99.45 E-value=1.2e-13 Score=132.18 Aligned_cols=139 Identities=19% Similarity=0.401 Sum_probs=93.8
Q ss_pred eeeeeeecc---ccceeeEeeceeeEEccCCCCCCcccC----------CceecCCCcCCceEEEEEecCCcceeEeeee
Q 021275 109 PLKVSLEDL---YNGTSKKLSLSRNVICTKCKGKGSKSG----------ASMKCSGCQGSGMKVSIRHLGPSMIQQMQHP 175 (315)
Q Consensus 109 ~~~~~l~e~---~~G~~~~~~~~~~~~C~~C~G~G~~~~----------~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~~ 175 (315)
.+.++.... |.|.... .......|+.|+|+|.... ...+|+.|.|+| +.+..+
T Consensus 137 ~i~~~r~~~C~~C~G~G~~-~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G-------------~~~~~~ 202 (374)
T PRK14293 137 EIRIPHLETCETCRGSGAK-PGTGPTTCSTCGGAGQVRRATRTPFGSFTQVSECPTCNGTG-------------QVIEDP 202 (374)
T ss_pred EEEeeccccCCCCCCcCCC-CCCCCeeCCCCCCcceEEEEEecCcceEEEEeeCCCCCcce-------------eEeccC
Confidence 344444444 4554443 2224578999999997531 135799999999 345788
Q ss_pred CCCCCCCceEeCCCCC-C---------------------Ccc--CCceEEEE----------------------------
Q 021275 176 CNECKGTGETINDKDR-C---------------------PQC--KGEKVIQE---------------------------- 203 (315)
Q Consensus 176 C~~C~G~G~~~~~~~~-C---------------------~~C--~G~g~~~~---------------------------- 203 (315)
|+.|.|+|.+...... . ..- .|.=++..
T Consensus 203 C~~C~G~g~v~~~~~~~V~IppG~~~G~~i~l~g~G~~~~~~~~~GDL~v~v~v~~~~~f~r~g~DL~~~~~Isl~eAl~ 282 (374)
T PRK14293 203 CDACGGQGVKQVTKKLKINIPAGVDTGTRLRVSGEGDAGLRGGPPGDLYVYLFVKNDPEFRRDGINILSEIKISYLQAIL 282 (374)
T ss_pred CCCCCCCcccccceEEEEEeCCCCCCCCEEEEccCccCCCCCCCCcCEEEEEEEeCCCccChhhhceEEEeccCHHHHhC
Confidence 9999999875431110 0 000 01101100
Q ss_pred ---------eEEEEEEecccccCCcEEEEcCCcCCCCCC--CccCEEEEEEEecCCCcEEeCCcEEEEE
Q 021275 204 ---------KKVLEVIVEKGMQNGQKITFPGEADEAPDT--VTGDIVFVLQQKEHPKFKRKGDDLFVEH 261 (315)
Q Consensus 204 ---------~~~~~v~Ip~G~~~G~~i~l~g~G~~~~~~--~~GDL~v~i~v~~~~~f~r~g~dL~~~~ 261 (315)
...++|.||+|+++|++++|+|+|++.+++ ..|||||+|+|..|+.|++++.+|+.++
T Consensus 283 G~~~~i~~ldG~~~i~ip~~~~~g~~~ri~g~G~p~~~~~~~~GDL~v~~~v~~P~~l~~~~~~l~~~l 351 (374)
T PRK14293 283 GDTLEVDTVDGPVELTIPAGTQPNTVLTLENKGVPRLGNPVARGDHLITVKVKIPTRISDEERELLEKL 351 (374)
T ss_pred CCEEEecCCCCCEEEEeCCCCCCCCEEEECCCCCCCCCCCCCcCCEEEEEEEECCCCCCHHHHHHHHHH
Confidence 013569999999999999999999987443 5799999999999999999888877664
No 69
>TIGR02349 DnaJ_bact chaperone protein DnaJ. This model represents bacterial forms of DnaJ, part of the DnaK-DnaJ-GrpE chaperone system. The three components typically are encoded by consecutive genes. DnaJ homologs occur in many genomes, typically not near DnaK and GrpE-like genes; most such genes are not included by this family. Eukaryotic (mitochondrial and chloroplast) forms are not included in the scope of this family.
Probab=99.45 E-value=1.4e-13 Score=130.93 Aligned_cols=136 Identities=20% Similarity=0.443 Sum_probs=90.6
Q ss_pred eeeeeeeccc---cceeeEeeceeeEEccCCCCCCcccC----------CceecCCCcCCceEEEEEecCCcceeEeeee
Q 021275 109 PLKVSLEDLY---NGTSKKLSLSRNVICTKCKGKGSKSG----------ASMKCSGCQGSGMKVSIRHLGPSMIQQMQHP 175 (315)
Q Consensus 109 ~~~~~l~e~~---~G~~~~~~~~~~~~C~~C~G~G~~~~----------~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~~ 175 (315)
.+.++....| .|.... .-.....|+.|+|+|.... ...+|+.|.|+|. .++.+
T Consensus 137 ~i~~~r~~~C~~C~G~G~~-~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~-------------~~~~~ 202 (354)
T TIGR02349 137 EIEIPRKESCETCHGTGAK-PGTDPKTCPTCGGTGQVRRQQGTPFGFFQQQQTCPTCGGEGK-------------IIKEP 202 (354)
T ss_pred EEEeecCCcCCCCCCCCCC-CCCCCccCCCCCCeeEEEEEEeccCCceEEEEecCCCCCcce-------------ecCCC
Confidence 3444444444 454433 2223578999999997432 2357999999993 45678
Q ss_pred CCCCCCCceEeCCCC----------------------CCCcc--CCc---------------------------------
Q 021275 176 CNECKGTGETINDKD----------------------RCPQC--KGE--------------------------------- 198 (315)
Q Consensus 176 C~~C~G~G~~~~~~~----------------------~C~~C--~G~--------------------------------- 198 (315)
|+.|+|.|.+..... ....- .|.
T Consensus 203 C~~C~G~g~v~~~~~l~V~Ip~G~~~G~~i~~~g~G~~~~~~~~~GDl~v~i~v~~h~~f~r~g~DL~~~~~isl~eAl~ 282 (354)
T TIGR02349 203 CSTCKGKGRVKERKTITVKIPAGVDTGQRLRVSGKGNAGENGGPNGDLYVVIRVKPHKIFERDGNDLYIEVPISFTQAIL 282 (354)
T ss_pred CCCCCCCcEecccceEEEEECCCCCCCCEEEEecCccCCCCCCCCCCEEEEEEEecCcceEEecCCEEEEEEeCHHHHhC
Confidence 999999986543110 00000 011
Q ss_pred eEEEE----eEEEEEEecccccCCcEEEEcCCcCCCCC-CCccCEEEEEEEecCCCcEEeCCcEE
Q 021275 199 KVIQE----KKVLEVIVEKGMQNGQKITFPGEADEAPD-TVTGDIVFVLQQKEHPKFKRKGDDLF 258 (315)
Q Consensus 199 g~~~~----~~~~~v~Ip~G~~~G~~i~l~g~G~~~~~-~~~GDL~v~i~v~~~~~f~r~g~dL~ 258 (315)
|.... ...++|.||+|+++|++++|+|+|++..+ ..+|||||+|+|..|+.|++++.+++
T Consensus 283 G~~~~i~~ldG~i~v~ip~g~~~g~~~~i~g~G~p~~~~~~~GDL~i~~~v~~P~~l~~~~~~~l 347 (354)
T TIGR02349 283 GGEIEVPTLDGDVKLKIPAGTQSGTVFRLKGKGVPRLRGNGRGDLLVTVKVETPKNLSKEQKELL 347 (354)
T ss_pred CCeEEEecCCceEEEEECCcccCCcEEEECCCCcCCCCCCCCCCEEEEEEEECCCCCCHHHHHHH
Confidence 00000 11467999999999999999999998743 46899999999999988887766543
No 70
>PRK14296 chaperone protein DnaJ; Provisional
Probab=99.44 E-value=1.8e-13 Score=130.61 Aligned_cols=137 Identities=20% Similarity=0.376 Sum_probs=88.8
Q ss_pred eeeeeeecc---ccceeeEeeceeeEEccCCCCCCcccC----------CceecCCCcCCceEEEEEecCCcceeEeeee
Q 021275 109 PLKVSLEDL---YNGTSKKLSLSRNVICTKCKGKGSKSG----------ASMKCSGCQGSGMKVSIRHLGPSMIQQMQHP 175 (315)
Q Consensus 109 ~~~~~l~e~---~~G~~~~~~~~~~~~C~~C~G~G~~~~----------~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~~ 175 (315)
.+.++.... |.|+..+ .-.....|+.|+|+|.... ...+|+.|+|+| +.+..+
T Consensus 143 ~i~~~~~~~C~~C~G~G~~-~~~~~~~C~~C~G~G~~~~~~~~g~~~~q~~~~C~~C~G~G-------------~~~~~~ 208 (372)
T PRK14296 143 IIELDLLTNCSKCFGSGAE-SNSDIHICNNCHGTGEVLVQKNMGFFQFQQSAKCNVCNGAG-------------KIIKNK 208 (372)
T ss_pred EEEEeeeeccCCCCCCccC-CCCCCccCCCCCCCceEEEEEeccceEEEEEecCCCcCCcc-------------eeeccc
Confidence 344444444 4554443 2234578999999998642 235799999999 445788
Q ss_pred CCCCCCCceEeCC----------------------CCCCCcc--CCc-----------eEEEE-----------------
Q 021275 176 CNECKGTGETIND----------------------KDRCPQC--KGE-----------KVIQE----------------- 203 (315)
Q Consensus 176 C~~C~G~G~~~~~----------------------~~~C~~C--~G~-----------g~~~~----------------- 203 (315)
|+.|+|.|.+... ...-..= .|. .+...
T Consensus 209 C~~C~G~g~v~~~~~~~V~Ip~G~~~G~~i~~~g~G~~~~~~~~~GDL~v~v~v~~h~~F~R~~G~DL~~~~~Isl~eAl 288 (372)
T PRK14296 209 CKNCKGKGKYLERKKIEVNIPKGIRPNQQIKLSQKGHASLNNGVNGDLIIDIYLKESKVFEIINNNDILMTYNISYLDAI 288 (372)
T ss_pred ccCCCCceEEEEEEEEEEEECCCCCCCCEEEEeccccCCCCCCCCccEEEEEEEeCCCCEEEeCCCcEEEEEecCHHHHh
Confidence 9999999765320 0000000 011 00000
Q ss_pred ----------eEEEEEEecccccCCcEEEEcCCcCCCC--CCCccCEEEEEEEecCCCcEEeCCcEEE
Q 021275 204 ----------KKVLEVIVEKGMQNGQKITFPGEADEAP--DTVTGDIVFVLQQKEHPKFKRKGDDLFV 259 (315)
Q Consensus 204 ----------~~~~~v~Ip~G~~~G~~i~l~g~G~~~~--~~~~GDL~v~i~v~~~~~f~r~g~dL~~ 259 (315)
...++|+||+++++|++++|+|+|+|.. ++..|||||+|+|.-|+.++.+...|+.
T Consensus 289 lG~~~~i~tldG~~~v~ip~~t~~g~~~ri~GkGmP~~~~~~~~GDL~V~~~V~~P~~Ls~~q~~~l~ 356 (372)
T PRK14296 289 LGNEIIIKTLDGDIKYKLPKSINSNELIIINNKGLYKSINKDKRGDLIIKVNIVVPKNLSKKEKELIE 356 (372)
T ss_pred CCCEEEeeCCCCCEEEEECCccCCCcEEEEcCCCCCcCCCCCCcCCEEEEEEEECCCCCCHHHHHHHH
Confidence 0035699999999999999999999842 3467999999999988776665554443
No 71
>PRK14276 chaperone protein DnaJ; Provisional
Probab=99.43 E-value=1.1e-13 Score=132.58 Aligned_cols=131 Identities=22% Similarity=0.434 Sum_probs=87.2
Q ss_pred ccccceeeEeeceeeEEccCCCCCCcccC----------CceecCCCcCCceEEEEEecCCcceeEeeeeCCCCCCCceE
Q 021275 116 DLYNGTSKKLSLSRNVICTKCKGKGSKSG----------ASMKCSGCQGSGMKVSIRHLGPSMIQQMQHPCNECKGTGET 185 (315)
Q Consensus 116 e~~~G~~~~~~~~~~~~C~~C~G~G~~~~----------~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~~C~~C~G~G~~ 185 (315)
+.|.|.... .-.....|+.|+|+|.... ...+|+.|+|+| +.+..+|+.|+|.|.+
T Consensus 150 ~~C~G~G~~-~~~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G-------------~~~~~~C~~C~G~g~~ 215 (380)
T PRK14276 150 HTCNGSGAK-PGTSPVTCGKCHGSGVITVDTQTPLGMMRRQVTCDVCHGTG-------------KEIKEPCQTCHGTGHE 215 (380)
T ss_pred CCCcCcccC-CCCCCccCCCCCCeeEEEEEEecCCceEEEEEECCCCCCCC-------------ccccCCCCCCCCceEE
Confidence 345565543 2233578999999997532 235799999999 3457889999999765
Q ss_pred eCC----------------------CCCCC--ccCCceEEEE-------------------------------------e
Q 021275 186 IND----------------------KDRCP--QCKGEKVIQE-------------------------------------K 204 (315)
Q Consensus 186 ~~~----------------------~~~C~--~C~G~g~~~~-------------------------------------~ 204 (315)
... ..... .-.|.-++.. .
T Consensus 216 ~~~~~l~V~Ip~G~~~G~~i~l~G~G~~~~~~~~~GDL~v~i~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~v~tld 295 (380)
T PRK14276 216 KQAHTVSVKIPAGVETGQQIRLQGQGEAGFNGGPYGDLYVVFRVEPSKKFERDGSTIYYTLPISFVQAALGDTVEVPTVH 295 (380)
T ss_pred EEEEEEEEEeCCCccCCcEEEEeccccCCCCCCCCcCEEEEEEEEECcceeeecceEEEEEecCHHHHhCCCeEEEEcCC
Confidence 320 00000 0011111110 0
Q ss_pred EEEEEEecccccCCcEEEEcCCcCCCC-CCCccCEEEEEEEecCCCcEEeCCcEEEE
Q 021275 205 KVLEVIVEKGMQNGQKITFPGEADEAP-DTVTGDIVFVLQQKEHPKFKRKGDDLFVE 260 (315)
Q Consensus 205 ~~~~v~Ip~G~~~G~~i~l~g~G~~~~-~~~~GDL~v~i~v~~~~~f~r~g~dL~~~ 260 (315)
..++|+||+|+++|++++|+|+|++.. +..+|||||+|+|..|+.++.+...|+.+
T Consensus 296 g~i~v~ip~g~~~g~~~~i~g~G~p~~~~~~~GDL~V~~~v~~P~~l~~~q~~~l~~ 352 (380)
T PRK14276 296 GDVELKIPAGTQTGKKFRLRGKGAPKLRGGGNGDQHVTVNIVTPTKLNDAQKEALKA 352 (380)
T ss_pred CcEEEEECCCCCCCCEEEECCCCcCCCCCCCCCCEEEEEEEECCCCCCHHHHHHHHH
Confidence 135699999999999999999999974 34679999999999888766655544433
No 72
>PRK14281 chaperone protein DnaJ; Provisional
Probab=99.43 E-value=2e-13 Score=131.43 Aligned_cols=136 Identities=21% Similarity=0.380 Sum_probs=90.2
Q ss_pred eeeeeeecc---ccceeeEeeceeeEEccCCCCCCcccC----------CceecCCCcCCceEEEEEecCCcceeEeeee
Q 021275 109 PLKVSLEDL---YNGTSKKLSLSRNVICTKCKGKGSKSG----------ASMKCSGCQGSGMKVSIRHLGPSMIQQMQHP 175 (315)
Q Consensus 109 ~~~~~l~e~---~~G~~~~~~~~~~~~C~~C~G~G~~~~----------~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~~ 175 (315)
++.++.... |.|....-. ....|+.|+|+|.... ...+|+.|+|+| +.+..+
T Consensus 157 ~i~~~r~~~C~~C~G~G~~~~--~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G-------------~~~~~~ 221 (397)
T PRK14281 157 TLKIKKQVPCKECNGTGSKTG--ATETCPTCHGSGEVRQASKTMFGQFVNITACPTCGGEG-------------RVVKDR 221 (397)
T ss_pred EEEEEeeecCCCCCCcccCCC--CCccCCCCCCCcEEEEEEecccceEEEEEecCCCccee-------------eeeCCC
Confidence 344554544 556544422 4578999999997532 235799999999 445788
Q ss_pred CCCCCCCceEeCCCCCCCc------c-------------------CCc--------------------------------
Q 021275 176 CNECKGTGETINDKDRCPQ------C-------------------KGE-------------------------------- 198 (315)
Q Consensus 176 C~~C~G~G~~~~~~~~C~~------C-------------------~G~-------------------------------- 198 (315)
|+.|+|.|.+... ..... - .|.
T Consensus 222 C~~C~G~g~v~~~-~~~~V~Ip~G~~~G~~i~~~g~G~~~~~~~~~GDL~i~i~~~~h~~F~R~G~DL~~~~~Isl~eAl 300 (397)
T PRK14281 222 CPACYGEGIKQGE-VTVKVTVPAGVQDGNYLTLRGQGNAGPRGGAPGDLIVVIEEKPHELFVRNGDDVIYNLAVSYPDLV 300 (397)
T ss_pred CCCCCCCccEecc-eEEEEecCCCCCCCCEEEEecccccCCCCCCCCcEEEEEEEcCCCCeEEecCCEEEEEEecHHHHh
Confidence 9999999776431 00000 0 011
Q ss_pred -eEEEE----eEEEEEEecccccCCcEEEEcCCcCCCC-CCCccCEEEEEEEecCCCcEEeCCcEEEE
Q 021275 199 -KVIQE----KKVLEVIVEKGMQNGQKITFPGEADEAP-DTVTGDIVFVLQQKEHPKFKRKGDDLFVE 260 (315)
Q Consensus 199 -g~~~~----~~~~~v~Ip~G~~~G~~i~l~g~G~~~~-~~~~GDL~v~i~v~~~~~f~r~g~dL~~~ 260 (315)
|.... ...++|+||+|+++|++++|+|+|++.. +...|||||+|+|.-|+.++.++..|+.+
T Consensus 301 ~G~~~~i~tldg~i~v~ip~g~~~G~~~ri~g~G~P~~~~~~~GDL~V~~~V~~P~~Ls~~qk~~l~~ 368 (397)
T PRK14281 301 LGTKVEVPTLDGAVKLTIPAGTQPETMLRIPGKGIGHLRGSGRGDQYVRVNVFVPKEVSHQDKELLKE 368 (397)
T ss_pred cCCeEEeecCCccEEEEeCCccCCCcEEEEcCCCCCCCCCCCCCCEEEEEEEEcCCCCCHHHHHHHHH
Confidence 00000 1145699999999999999999999864 34679999999999888766555544433
No 73
>PRK14280 chaperone protein DnaJ; Provisional
Probab=99.43 E-value=2.2e-13 Score=130.35 Aligned_cols=138 Identities=20% Similarity=0.427 Sum_probs=90.4
Q ss_pred eeeeeeecc---ccceeeEeeceeeEEccCCCCCCcccC----------CceecCCCcCCceEEEEEecCCcceeEeeee
Q 021275 109 PLKVSLEDL---YNGTSKKLSLSRNVICTKCKGKGSKSG----------ASMKCSGCQGSGMKVSIRHLGPSMIQQMQHP 175 (315)
Q Consensus 109 ~~~~~l~e~---~~G~~~~~~~~~~~~C~~C~G~G~~~~----------~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~~ 175 (315)
.+.++.... |.|.... .-.....|+.|+|+|.... ...+|+.|+|+| +.+..+
T Consensus 137 ~i~~~r~~~C~~C~G~G~~-~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G-------------~~~~~~ 202 (376)
T PRK14280 137 EIEIPKEETCDTCHGSGAK-PGTSKETCSHCGGSGQVSVEQNTPFGRVVNRQTCPHCNGTG-------------QEIKEK 202 (376)
T ss_pred EEEEeeeccCCCCCCcccC-CCCCCccCCCCCCEEEEEEEeecCCceEEEEEEcCCCCCCC-------------ceecCC
Confidence 344444444 4555433 2234578999999997531 235799999999 345788
Q ss_pred CCCCCCCceEeCC----------------------CCCC--CccCCceEEEE----------------------------
Q 021275 176 CNECKGTGETIND----------------------KDRC--PQCKGEKVIQE---------------------------- 203 (315)
Q Consensus 176 C~~C~G~G~~~~~----------------------~~~C--~~C~G~g~~~~---------------------------- 203 (315)
|+.|+|+|.+... .... ..-.|.-++..
T Consensus 203 C~~C~G~g~v~~~~~i~V~Ip~G~~~G~~i~l~G~G~~~~~~~~~GDL~v~i~v~~h~~F~R~G~DL~~~~~Isl~eAl~ 282 (376)
T PRK14280 203 CPTCHGKGKVRKRKKINVKIPAGVDNGQQIRVSGEGEPGVNGGPAGDLYVVFRVRPHEFFERDGDDIYCEMPLTFAQAAL 282 (376)
T ss_pred CCCCCCceEEEEEEEEEEEeCCCCcCCcEEEEcccccCCCCCCCCcCEEEEEEEecCCCeEEecCCEEEEEecCHHHHhC
Confidence 9999999865320 0000 00111201100
Q ss_pred ---------eEEEEEEecccccCCcEEEEcCCcCCCC-CCCccCEEEEEEEecCCCcEEeCCcEEEE
Q 021275 204 ---------KKVLEVIVEKGMQNGQKITFPGEADEAP-DTVTGDIVFVLQQKEHPKFKRKGDDLFVE 260 (315)
Q Consensus 204 ---------~~~~~v~Ip~G~~~G~~i~l~g~G~~~~-~~~~GDL~v~i~v~~~~~f~r~g~dL~~~ 260 (315)
...++|+||+|+++|++++|+|+|++.. +...|||||+|+|..|+.++.+...|+.+
T Consensus 283 G~~~~i~tldg~i~v~ip~g~~~g~~~~i~g~G~p~~~~~~~GDL~v~~~v~~P~~Ls~~q~~~l~~ 349 (376)
T PRK14280 283 GDEIEVPTLHGKVKLKIPAGTQTGTQFRLKGKGVPNVRGYGQGDQYVVVRVVTPTKLTDRQKELLRE 349 (376)
T ss_pred CCEEEEecCCceEEEEECCCCCCCcEEEEcCCCCCCCCCCCCCCEEEEEEEECCCCCCHHHHHHHHH
Confidence 1145699999999999999999999864 45689999999999887766555444433
No 74
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.41 E-value=1.1e-13 Score=129.28 Aligned_cols=81 Identities=49% Similarity=0.852 Sum_probs=66.5
Q ss_pred CeeeCCCCCCCHHHHHHHHHHHHHHhCCCCCCCH-----HHHHHHHHHHhhcCCCccccccccccccccccccCCCCCCC
Q 021275 1 MRFSESRKNASQDDLKKAYRKAAIKNHPDKGGDP-----EKFKELAQAYEVLSDPEKREIYDQYGEDALKEGMGGGGGAH 75 (315)
Q Consensus 1 y~vLgv~~~a~~~~ik~ayr~la~~~hPd~~~~~-----~~f~~i~~Ay~~L~d~~~R~~YD~~g~~~~~~g~~~~~~~~ 75 (315)
|.||||+++|+..|||+|||++|+.||||++... .+|+++.+||.+|+||.+|..||.- .. +... ++++++.
T Consensus 376 ykilGi~~~as~~eikkayrk~AL~~Hpd~~agsq~eaE~kFkevgeAy~il~d~~kr~r~dsg-~d-le~~-~~~~a~~ 452 (486)
T KOG0550|consen 376 YKILGISRNASDDEIKKAYRKLALVHHPDKNAGSQKEAEAKFKEVGEAYTILSDPMKRVRFDSG-QD-LEEV-GSGGAGF 452 (486)
T ss_pred HHHhhhhhhcccchhhhHHHHHHHHhCCCcCcchhHHHHHHHHHHHHHHHHhcCHHHHhhcccc-cc-hhhh-cCCCcCc
Confidence 7899999999999999999999999999998654 6899999999999999999999973 21 2111 1223567
Q ss_pred CCcccccCc
Q 021275 76 DPFDIFQSF 84 (315)
Q Consensus 76 ~~~~~F~~~ 84 (315)
+|+++|..|
T Consensus 453 dp~~~~~a~ 461 (486)
T KOG0550|consen 453 DPFNIFRAF 461 (486)
T ss_pred Chhhhhhhc
Confidence 888888776
No 75
>PTZ00100 DnaJ chaperone protein; Provisional
Probab=99.40 E-value=3e-13 Score=106.84 Aligned_cols=48 Identities=23% Similarity=0.447 Sum_probs=45.8
Q ss_pred CeeeCCCCCCCHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHhhcC
Q 021275 1 MRFSESRKNASQDDLKKAYRKAAIKNHPDKGGDPEKFKELAQAYEVLS 48 (315)
Q Consensus 1 y~vLgv~~~a~~~~ik~ayr~la~~~hPd~~~~~~~f~~i~~Ay~~L~ 48 (315)
|+||||+++||.+||++|||+|++++|||++++++.|++|++|||+|.
T Consensus 68 y~ILGv~~~As~~eIkkaYRrLa~~~HPDkgGs~~~~~kIneAyevL~ 115 (116)
T PTZ00100 68 YKILNISPTASKERIREAHKQLMLRNHPDNGGSTYIASKVNEAKDLLL 115 (116)
T ss_pred HHHcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHh
Confidence 689999999999999999999999999999888899999999999985
No 76
>KOG0722 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.40 E-value=6.9e-14 Score=122.57 Aligned_cols=59 Identities=37% Similarity=0.648 Sum_probs=55.9
Q ss_pred CeeeCCCCCCCHHHHHHHHHHHHHHhCCCCCCCH---HHHHHHHHHHhhcCCCccccccccc
Q 021275 1 MRFSESRKNASQDDLKKAYRKAAIKNHPDKGGDP---EKFKELAQAYEVLSDPEKREIYDQY 59 (315)
Q Consensus 1 y~vLgv~~~a~~~~ik~ayr~la~~~hPd~~~~~---~~f~~i~~Ay~~L~d~~~R~~YD~~ 59 (315)
|+||||+++|+.+||++|||+||+++|||+++++ +.|..|.+|||+|.|.+.|..||-+
T Consensus 36 YdVLgV~Rea~KseIakAYRqLARrhHPDr~r~~e~k~~F~~iAtayeilkd~e~rt~ydya 97 (329)
T KOG0722|consen 36 YDVLGVAREANKSEIAKAYRQLARRHHPDRNRDPESKKLFVKIATAYEILKDNETRTQYDYA 97 (329)
T ss_pred HHHhhhhhhccHHHHHHHHHHHHHHhCCcccCCchhhhhhhhhhcccccccchhhHHhHHHH
Confidence 7899999999999999999999999999998765 7899999999999999999999964
No 77
>PRK14292 chaperone protein DnaJ; Provisional
Probab=99.40 E-value=4.1e-13 Score=128.38 Aligned_cols=131 Identities=18% Similarity=0.425 Sum_probs=89.3
Q ss_pred ccccceeeEeeceeeEEccCCCCCCcccC----------CceecCCCcCCceEEEEEecCCcceeEeeeeCCCCCCCceE
Q 021275 116 DLYNGTSKKLSLSRNVICTKCKGKGSKSG----------ASMKCSGCQGSGMKVSIRHLGPSMIQQMQHPCNECKGTGET 185 (315)
Q Consensus 116 e~~~G~~~~~~~~~~~~C~~C~G~G~~~~----------~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~~C~~C~G~G~~ 185 (315)
+.|.|+...........|+.|+|+|.... ...+|+.|+|+|. .+..+|+.|+|+|.+
T Consensus 143 ~~C~G~G~~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~-------------~~~~~C~~C~G~g~v 209 (371)
T PRK14292 143 EHCHGSRTEPGGKPPKTCPTCRGAGAVRAQARTIFGVVETQQPCPTCRGEGQ-------------IITDPCTVCRGRGRT 209 (371)
T ss_pred CCCcccccCCCCCCCccCCCCCCccEEEEEEeccCceEEEeeecCCCcccce-------------ecCCCCCCCCCceEE
Confidence 44556554423233578999999997642 1357999999994 457889999999865
Q ss_pred eCCCCCCCc-------------cC----------CceEEEEe-------------------------------------E
Q 021275 186 INDKDRCPQ-------------CK----------GEKVIQEK-------------------------------------K 205 (315)
Q Consensus 186 ~~~~~~C~~-------------C~----------G~g~~~~~-------------------------------------~ 205 (315)
... ..... -. |.=++... .
T Consensus 210 ~~~-~~~~V~Ip~G~~~G~~i~~~G~G~~~~~~~GDL~v~i~v~~h~~f~r~g~dL~~~~~isl~eAl~G~~~~i~tldG 288 (371)
T PRK14292 210 LKA-ETVKVKLPRGIDEGYRIRVAGMGNEGPGGNGDLYVHIEMEPHPELRREQEHLIYEARIGFAKAALGGQITVPTLDG 288 (371)
T ss_pred eec-ceEEEEECCCCCCCcEEEEecCcCCCCCCCCCEEEEEEEecCCccccchhceeEEeccCHHHHhCCCeEEEECCCC
Confidence 431 00000 00 11111100 0
Q ss_pred EEEEEecccccCCcEEEEcCCcCCCC-CCCccCEEEEEEEecCCCcEEeCCcEEEE
Q 021275 206 VLEVIVEKGMQNGQKITFPGEADEAP-DTVTGDIVFVLQQKEHPKFKRKGDDLFVE 260 (315)
Q Consensus 206 ~~~v~Ip~G~~~G~~i~l~g~G~~~~-~~~~GDL~v~i~v~~~~~f~r~g~dL~~~ 260 (315)
...|.||+|+++|++++|+|+|++.. +..+|||||+|+|+.|+.|+.+...|+.+
T Consensus 289 ~~~v~ip~g~~~g~~~~i~g~G~p~~~~~~~GDL~V~~~v~~P~~l~~~q~~ll~~ 344 (371)
T PRK14292 289 PQVIEVKPGTQHGDLHRLRGQGMPRLQGAGTGDLIVEYEIAVPKQLSPEAREALEA 344 (371)
T ss_pred CEEEecCCCcCCCcEEEECCCCCCCCCCCCCCCEEEEEEEECCCCCCHHHHHHHHH
Confidence 23599999999999999999999874 45679999999999998887776665543
No 78
>PRK14297 chaperone protein DnaJ; Provisional
Probab=99.40 E-value=4.8e-13 Score=128.19 Aligned_cols=136 Identities=24% Similarity=0.418 Sum_probs=88.4
Q ss_pred eeeeeeecc---ccceeeEeeceeeEEccCCCCCCcccC----------CceecCCCcCCceEEEEEecCCcceeEeeee
Q 021275 109 PLKVSLEDL---YNGTSKKLSLSRNVICTKCKGKGSKSG----------ASMKCSGCQGSGMKVSIRHLGPSMIQQMQHP 175 (315)
Q Consensus 109 ~~~~~l~e~---~~G~~~~~~~~~~~~C~~C~G~G~~~~----------~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~~ 175 (315)
++.++.... |.|.... .-.....|+.|+|+|.... ...+|+.|+|+|. .+..+
T Consensus 142 ~i~~~r~~~C~~C~G~G~~-~~~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~-------------~~~~~ 207 (380)
T PRK14297 142 EISVTRNENCETCNGTGAK-PGTSPKTCDKCGGTGQIRVQRNTPLGSFVSTTTCDKCGGSGK-------------VIEDP 207 (380)
T ss_pred EEEeeeeccCCCccccccc-CCCcCccCCCccCeEEEEEEEEcCCceeEEEEeCCCCCCCce-------------EcCCC
Confidence 344444444 4554443 2233578999999997531 2467999999993 45688
Q ss_pred CCCCCCCceEeCCC-----CCCCccC-------------------CceEEEE----------------------------
Q 021275 176 CNECKGTGETINDK-----DRCPQCK-------------------GEKVIQE---------------------------- 203 (315)
Q Consensus 176 C~~C~G~G~~~~~~-----~~C~~C~-------------------G~g~~~~---------------------------- 203 (315)
|..|+|.|.+.... -+=-.-. |.=++..
T Consensus 208 C~~C~G~g~v~~~~~i~V~Ip~G~~~G~~I~l~g~G~~~~~~~~~GDL~v~v~v~~h~~f~R~G~DL~~~~~Isl~eAl~ 287 (380)
T PRK14297 208 CNKCHGKGKVRKNRKIKVNVPAGVDTGNVIPLRGQGEHGKNGGPTGDLYINIRVAPHKTFKRKGFDIYIDKHISFAKAAL 287 (380)
T ss_pred CCCCCCCeEEEeEeEEEEEeCCCCCCCcEEEEecCccCCCCCCCCccEEEEEEEcCCCCEEEeCCCEEEEEEeCHHHHhC
Confidence 99999998542200 0000000 1100000
Q ss_pred ---------eEEEEEEecccccCCcEEEEcCCcCCCC-CCCccCEEEEEEEecCCCcEEeCCcEE
Q 021275 204 ---------KKVLEVIVEKGMQNGQKITFPGEADEAP-DTVTGDIVFVLQQKEHPKFKRKGDDLF 258 (315)
Q Consensus 204 ---------~~~~~v~Ip~G~~~G~~i~l~g~G~~~~-~~~~GDL~v~i~v~~~~~f~r~g~dL~ 258 (315)
...++|+||+|+++|++++|+|+|++.. ++.+|||||+|+|.-|+.++.+...|+
T Consensus 288 G~~~~i~~ldg~~~v~ip~g~~~g~~~ri~g~G~p~~~~~~~GDL~v~~~v~~P~~ls~~q~~~l 352 (380)
T PRK14297 288 GTEIKVPTVDGEVKYEVPAGTQPGTVFRLKGKGVPRVNSTGRGNQYVTVIVDIPKKLNSKQKEAL 352 (380)
T ss_pred CCcEEEEcCCCcEEEEECCCcCCCCEEEEcCCCcCCCCCCCCCcEEEEEEEEcCCCCCHHHHHHH
Confidence 0135699999999999999999999864 456799999999998877665554444
No 79
>PTZ00037 DnaJ_C chaperone protein; Provisional
Probab=99.39 E-value=6.1e-13 Score=128.53 Aligned_cols=128 Identities=19% Similarity=0.340 Sum_probs=83.8
Q ss_pred ccccceeeEeeceeeEEccCCCCCCcccC----------CceecCCCcCCceEEEEEecCCcceeEeeeeCCCCCCCceE
Q 021275 116 DLYNGTSKKLSLSRNVICTKCKGKGSKSG----------ASMKCSGCQGSGMKVSIRHLGPSMIQQMQHPCNECKGTGET 185 (315)
Q Consensus 116 e~~~G~~~~~~~~~~~~C~~C~G~G~~~~----------~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~~C~~C~G~G~~ 185 (315)
..|.|+... ......|+.|+|+|.... ...+|+.|+|+|.++. ...+|+.|+|.|.+
T Consensus 154 ~~C~G~G~~--~~~~~~C~~C~G~G~~~~~~~~g~~~~q~~~~C~~C~G~G~~i~-----------~~~~C~~C~G~g~v 220 (421)
T PTZ00037 154 ANCEGHGGP--KDAFVDCKLCNGQGIRVQIRQMGSMIHQTQSTCNSCNGQGKIIP-----------ESKKCKNCSGKGVK 220 (421)
T ss_pred cccCCCCCC--CCCCccCCCCCCCCeEEEEEeecceeeEEEEeCCCCCCcceecc-----------ccccCCcCCCccee
Confidence 445666543 224578999999996321 2457999999995321 24789999999876
Q ss_pred eCCCCCCCc------cC------------------CceEEEE--------------------------------------
Q 021275 186 INDKDRCPQ------CK------------------GEKVIQE-------------------------------------- 203 (315)
Q Consensus 186 ~~~~~~C~~------C~------------------G~g~~~~-------------------------------------- 203 (315)
... ..... -. |.=++..
T Consensus 221 ~~~-~~l~V~Ip~G~~dG~~I~~~G~Gd~~~~~~pGDLiv~I~~~ph~~F~R~G~DL~~~~~Isl~eAllG~~i~I~tLd 299 (421)
T PTZ00037 221 KTR-KILEVNIDKGVPNQHKITFHGEADEKPNEIPGNVVFILNEKPHDTFKREGGDLFITKKISLYEALTGFVFYITHLD 299 (421)
T ss_pred eee-eEEEEeeCCCCCCCcEEEEecccCCCCCCCCCcEEEEEEecCCCCcEEeCCeEEEEEeCCHHHHhcCCEEEeeCCC
Confidence 431 00000 00 0100000
Q ss_pred eEEEEEEeccc--ccCCcEEEEcCCcCCCCC--CCccCEEEEEEEecC--CCcEEeCCcE
Q 021275 204 KKVLEVIVEKG--MQNGQKITFPGEADEAPD--TVTGDIVFVLQQKEH--PKFKRKGDDL 257 (315)
Q Consensus 204 ~~~~~v~Ip~G--~~~G~~i~l~g~G~~~~~--~~~GDL~v~i~v~~~--~~f~r~g~dL 257 (315)
...++|+||+| +++|++++|+|+|+|... +..|||||+|+|.-| ..++.+...|
T Consensus 300 G~~l~I~ip~g~vt~pg~~~~I~geGmP~~~~~~~rGDL~V~~~V~~P~~~~Ls~~qk~l 359 (421)
T PTZ00037 300 GRKLLVNTPPGEVVKPGDIKVINNEGMPTYKSPFKKGNLYVTFEVIFPVDRKFTNEEKEI 359 (421)
T ss_pred CCeEEEEeCCCcccCCCcEEEeCCCCcccCCCCCCCCCEEEEEEEEcCCCCCCCHHHHHH
Confidence 01466999999 999999999999999643 467999999999987 6665554433
No 80
>PRK14289 chaperone protein DnaJ; Provisional
Probab=99.38 E-value=5.2e-13 Score=128.28 Aligned_cols=136 Identities=18% Similarity=0.343 Sum_probs=88.9
Q ss_pred eeeeeeeccccceeeEe--eceeeEEccCCCCCCcccC----------CceecCCCcCCceEEEEEecCCcceeEeeeeC
Q 021275 109 PLKVSLEDLYNGTSKKL--SLSRNVICTKCKGKGSKSG----------ASMKCSGCQGSGMKVSIRHLGPSMIQQMQHPC 176 (315)
Q Consensus 109 ~~~~~l~e~~~G~~~~~--~~~~~~~C~~C~G~G~~~~----------~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~~C 176 (315)
.+.++....|..|.... .-.....|+.|+|+|.... ...+|+.|+|+|. .+...|
T Consensus 148 ~i~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~-------------~~~~~C 214 (386)
T PRK14289 148 KFKVKKYVPCSHCHGTGAEGNNGSETCPTCKGSGSVTRVQNTILGTMQTQSTCPTCNGEGK-------------IIKKKC 214 (386)
T ss_pred EEEEEeecccCCCCCCCCCCCCCCCcCCCCcCeEEEEEEEecccceEEEEEecCCCCcccc-------------ccCcCC
Confidence 45555555554443332 2234578999999998642 1357999999994 456789
Q ss_pred CCCCCCceEeCC----------------------CCCCCc--cCCceEEEE-----------------------------
Q 021275 177 NECKGTGETIND----------------------KDRCPQ--CKGEKVIQE----------------------------- 203 (315)
Q Consensus 177 ~~C~G~G~~~~~----------------------~~~C~~--C~G~g~~~~----------------------------- 203 (315)
+.|+|+|.+... ...... =.|.-++..
T Consensus 215 ~~C~G~g~v~~~~~~~V~Ip~G~~~G~~i~l~g~G~~~~~~~~~GDL~v~v~v~~~~~f~r~g~DL~~~~~Isl~eAl~G 294 (386)
T PRK14289 215 KKCGGEGIVYGEEVITVKIPAGVAEGMQLSMNGKGNAGKHGGVNGDLLVVIEEEPHPELIRDENDLIYNLLLSVPTAALG 294 (386)
T ss_pred CCCCCCcEEeeeEEEEEEeCCCCCCCCEEEEeccccCCCCCCCCccEEEEEEEecCCcccccccceeEEeccCHHHHhCC
Confidence 999999865430 000000 001100000
Q ss_pred --------eEEEEEEecccccCCcEEEEcCCcCCCC-CCCccCEEEEEEEecCCCcEEeCCcE
Q 021275 204 --------KKVLEVIVEKGMQNGQKITFPGEADEAP-DTVTGDIVFVLQQKEHPKFKRKGDDL 257 (315)
Q Consensus 204 --------~~~~~v~Ip~G~~~G~~i~l~g~G~~~~-~~~~GDL~v~i~v~~~~~f~r~g~dL 257 (315)
...++|.||+|+++|++++|+|+|++.+ ++.+|||||+|+|+-|..++.++..|
T Consensus 295 ~~~~i~~ldg~i~v~ip~g~~~g~~~ri~g~G~p~~~~~~~GDL~v~~~v~~P~~l~~~q~~~ 357 (386)
T PRK14289 295 GAVEVPTIDGKAKVKIEAGTQPGKVLRLRNKGLPSVNGYGTGDLLVNVSVYIPETLSKEEKQT 357 (386)
T ss_pred CeEEeecCCceEEEEECCccCCCcEEEECCCCcCCCCCCCCCcEEEEEEEEeCCCCCHHHHHH
Confidence 1146799999999999999999999864 45689999999999877655544443
No 81
>PRK14283 chaperone protein DnaJ; Provisional
Probab=99.37 E-value=1.1e-12 Score=125.64 Aligned_cols=131 Identities=22% Similarity=0.418 Sum_probs=87.3
Q ss_pred ccccceeeEeeceeeEEccCCCCCCcccC----------CceecCCCcCCceEEEEEecCCcceeEeeeeCCCCCCCceE
Q 021275 116 DLYNGTSKKLSLSRNVICTKCKGKGSKSG----------ASMKCSGCQGSGMKVSIRHLGPSMIQQMQHPCNECKGTGET 185 (315)
Q Consensus 116 e~~~G~~~~~~~~~~~~C~~C~G~G~~~~----------~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~~C~~C~G~G~~ 185 (315)
+.|.|.... .-.....|+.|+|+|.... ...+|+.|+|+|. .+..+|..|+|+|.+
T Consensus 150 ~~C~G~G~~-~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~-------------~~~~~C~~C~G~g~v 215 (378)
T PRK14283 150 PVCNGSRAE-PGSEVKTCPTCGGTGQVKQVRNTILGQMMNVTTCPDCQGEGK-------------IVEKPCSNCHGKGVV 215 (378)
T ss_pred CCCCccccC-CCCCCccCCCcCCccEEEEEEeccCceEEEEEECCCCCccce-------------ecCCCCCCCCCceee
Confidence 345665543 2234578999999998631 2367999999993 457889999999875
Q ss_pred eCCCC----------------------CCC--ccCCc---------------------------------eEEEE----e
Q 021275 186 INDKD----------------------RCP--QCKGE---------------------------------KVIQE----K 204 (315)
Q Consensus 186 ~~~~~----------------------~C~--~C~G~---------------------------------g~~~~----~ 204 (315)
..... +.. .=.|. |.... .
T Consensus 216 ~~~~~l~V~IppG~~~G~~i~l~g~G~~~~~~~~~GDLiv~i~v~~~~~f~r~G~DL~~~~~Isl~eAl~G~~~~i~tld 295 (378)
T PRK14283 216 RETKTISVKIPAGVETGSRLRVSGEGEMGDRGGEPGDLYVVIKVKPHKIFRREGANLYYEKPISFVQAALGDTVDVPTID 295 (378)
T ss_pred ccceeEEEEECCCCCCCcEEEEeccccCCCCCCCCccEEEEEEEEcCCCEEEecCCEEEEEecCHHHHhcCCeEEEEcCC
Confidence 43100 000 00111 11100 1
Q ss_pred EEEEEEecccccCCcEEEEcCCcCCCC-CCCccCEEEEEEEecCCCcEEeCCcEEEE
Q 021275 205 KVLEVIVEKGMQNGQKITFPGEADEAP-DTVTGDIVFVLQQKEHPKFKRKGDDLFVE 260 (315)
Q Consensus 205 ~~~~v~Ip~G~~~G~~i~l~g~G~~~~-~~~~GDL~v~i~v~~~~~f~r~g~dL~~~ 260 (315)
..++|.||+|+++|++++|+|+|++.. +..+|||||+|+|.-|+.++.++..|+.+
T Consensus 296 G~i~v~ip~g~~~g~~~ri~g~G~p~~~~~~~GdL~v~~~v~~P~~l~~~q~~ll~~ 352 (378)
T PRK14283 296 GPVELKIPAGTQSGTTFRLKGHGMPSLRWSGKGNLYVKVKVVVPKKLSPKQKELLRE 352 (378)
T ss_pred ceEEEEeCCCCCCCCEEEECCCCCCCCCCCCCCCEEEEEEEEeCCCCCHHHHHHHHH
Confidence 146799999999999999999999864 34679999999999777666555444433
No 82
>PRK05014 hscB co-chaperone HscB; Provisional
Probab=99.36 E-value=5.4e-13 Score=113.82 Aligned_cols=58 Identities=22% Similarity=0.307 Sum_probs=52.3
Q ss_pred CeeeCCCCC--CCHHHHHHHHHHHHHHhCCCCCCCH---------HHHHHHHHHHhhcCCCcccccccc
Q 021275 1 MRFSESRKN--ASQDDLKKAYRKAAIKNHPDKGGDP---------EKFKELAQAYEVLSDPEKREIYDQ 58 (315)
Q Consensus 1 y~vLgv~~~--a~~~~ik~ayr~la~~~hPd~~~~~---------~~f~~i~~Ay~~L~d~~~R~~YD~ 58 (315)
|++|||++. ++.++|+++||+|++++|||+..+. +.|+.||+||++|+||.+|+.|+.
T Consensus 4 f~llgl~~~~~~d~~~L~~~yr~l~~~~HPDk~~~~~~~~~~~a~~~s~~iN~AY~~L~dp~~Ra~Yll 72 (171)
T PRK05014 4 FTLFGLPARYDIDTQLLASRYQELQRQFHPDKFANASERERLLAVQQAATINDAYQTLKHPLKRAEYLL 72 (171)
T ss_pred HHHCCCCCCCCCCHHHHHHHHHHHHHHhCcCCCCCCcHHHHHHHHHHHHHHHHHHHHHCChhHHHHHHH
Confidence 789999996 6789999999999999999996532 478999999999999999999984
No 83
>PRK01356 hscB co-chaperone HscB; Provisional
Probab=99.36 E-value=4.5e-13 Score=113.69 Aligned_cols=58 Identities=29% Similarity=0.332 Sum_probs=52.7
Q ss_pred CeeeCCCCC--CCHHHHHHHHHHHHHHhCCCCCCCH-------HHHHHHHHHHhhcCCCcccccccc
Q 021275 1 MRFSESRKN--ASQDDLKKAYRKAAIKNHPDKGGDP-------EKFKELAQAYEVLSDPEKREIYDQ 58 (315)
Q Consensus 1 y~vLgv~~~--a~~~~ik~ayr~la~~~hPd~~~~~-------~~f~~i~~Ay~~L~d~~~R~~YD~ 58 (315)
|++|||++. ++.++|+++||+|++++|||++.+. +.|..||+||++|+||.+|+.|+.
T Consensus 5 f~llgl~~~f~id~~~L~~aYr~lq~~~HPDk~~~~~~k~~~~~~s~~in~AY~~L~dp~~Ra~YlL 71 (166)
T PRK01356 5 FQLLGLPQEYNIDLKILEKQYFAMQVKYHPDKAKTLQEKEQNLIIASELNNAYSTLKDALKRAEYML 71 (166)
T ss_pred HHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCCHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 789999997 7899999999999999999998654 357899999999999999999975
No 84
>PRK14291 chaperone protein DnaJ; Provisional
Probab=99.35 E-value=5.8e-12 Score=120.80 Aligned_cols=125 Identities=26% Similarity=0.446 Sum_probs=82.4
Q ss_pred eeeeeeeccc---cceeeEeeceeeEEccCCCCCCcccC------CceecCCCcCCceEEEEEecCCcceeEeeeeCCCC
Q 021275 109 PLKVSLEDLY---NGTSKKLSLSRNVICTKCKGKGSKSG------ASMKCSGCQGSGMKVSIRHLGPSMIQQMQHPCNEC 179 (315)
Q Consensus 109 ~~~~~l~e~~---~G~~~~~~~~~~~~C~~C~G~G~~~~------~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~~C~~C 179 (315)
++.++....| .|.... .......|+.|+|+|.... ...+|+.|+|+|. +..+|+.|
T Consensus 150 ~i~~~r~~~C~~C~G~G~~-~~~~~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~--------------~~~~C~~C 214 (382)
T PRK14291 150 SLEVPRYVPCEACGGTGYD-PGSGEKVCPTCGGSGEIYQRGGFFRISQTCPTCGGEGV--------------LREPCSKC 214 (382)
T ss_pred EEEEeeeccCCCCccccCC-CCCCCccCCCCCCceEEEEecceEEEEecCCCCCCceE--------------EccCCCCC
Confidence 4444545554 454433 2334578999999997532 2367999999993 35789999
Q ss_pred CCCceEeCCC-----CCCCcc-------------------CCc---------------------------------eEEE
Q 021275 180 KGTGETINDK-----DRCPQC-------------------KGE---------------------------------KVIQ 202 (315)
Q Consensus 180 ~G~G~~~~~~-----~~C~~C-------------------~G~---------------------------------g~~~ 202 (315)
+|.|.+.... -+=-.- .|. |...
T Consensus 215 ~G~g~v~~~~~l~V~Ip~G~~~G~~i~~~g~G~~~~~g~~~GDL~v~i~~~~h~~F~r~G~DL~~~~~Isl~eAl~G~~~ 294 (382)
T PRK14291 215 NGRGLVIKKETIKVRIPPGVDNGSKLRVPGKGHAGRFGGPPGDLYIIVKVKPHPLFERRGDNLYLDVNITVAEAVLGTEL 294 (382)
T ss_pred CCCceEEeeeEEEEEeCCCCCCCCEEEEecCcCCCCCCCCCccEEEEEEEccCCCeeeecCCeEEEEEeeHHHHhCCCEE
Confidence 9997653300 000000 001 0000
Q ss_pred E-----eEEEEEEecccccCCcEEEEcCCcCCCCC-CCccCEEEEEEEecCC
Q 021275 203 E-----KKVLEVIVEKGMQNGQKITFPGEADEAPD-TVTGDIVFVLQQKEHP 248 (315)
Q Consensus 203 ~-----~~~~~v~Ip~G~~~G~~i~l~g~G~~~~~-~~~GDL~v~i~v~~~~ 248 (315)
. ...++|+||+|+++|++|+|+|+|++..+ ..+|||||+|+|.-|.
T Consensus 295 ~i~~ldG~~l~V~Ip~g~~~G~~i~i~G~G~p~~~~~~~GDL~V~~~V~~P~ 346 (382)
T PRK14291 295 EVPLLDGKKEKVKIPPGTKEGDKIRVPGKGMPRLKGSGYGDLVVRVHIDVPK 346 (382)
T ss_pred EEecCCCCEEEEEECCccCCCCEEEECCCCCCCCCCCCCCCEEEEEEEEeCC
Confidence 0 11467999999999999999999998743 4689999999999775
No 85
>PHA02624 large T antigen; Provisional
Probab=99.28 E-value=2.5e-12 Score=127.03 Aligned_cols=56 Identities=34% Similarity=0.452 Sum_probs=54.4
Q ss_pred CeeeCCCCCC--CHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHhhcCCCcccccc
Q 021275 1 MRFSESRKNA--SQDDLKKAYRKAAIKNHPDKGGDPEKFKELAQAYEVLSDPEKREIY 56 (315)
Q Consensus 1 y~vLgv~~~a--~~~~ik~ayr~la~~~hPd~~~~~~~f~~i~~Ay~~L~d~~~R~~Y 56 (315)
|++|||+++| +.++||+|||++|++||||+++++++|++|++||++|+|+.+|+.|
T Consensus 14 yelLGL~~~A~gs~~eIKkAYRkLAkkyHPDKgGdeekfk~Ln~AYevL~d~~k~~r~ 71 (647)
T PHA02624 14 MDLLGLPMAAWGNLPLMRKAYLRKCKEYHPDKGGDEEKMKRLNSLYKKLQEGVKSARQ 71 (647)
T ss_pred HHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCcHHHHHHHHHHHHHHhcHHHhhhc
Confidence 6899999999 9999999999999999999998889999999999999999999998
No 86
>PRK03578 hscB co-chaperone HscB; Provisional
Probab=99.27 E-value=3.4e-12 Score=109.27 Aligned_cols=58 Identities=26% Similarity=0.349 Sum_probs=51.8
Q ss_pred CeeeCCCCC--CCHHHHHHHHHHHHHHhCCCCCCCH---------HHHHHHHHHHhhcCCCcccccccc
Q 021275 1 MRFSESRKN--ASQDDLKKAYRKAAIKNHPDKGGDP---------EKFKELAQAYEVLSDPEKREIYDQ 58 (315)
Q Consensus 1 y~vLgv~~~--a~~~~ik~ayr~la~~~hPd~~~~~---------~~f~~i~~Ay~~L~d~~~R~~YD~ 58 (315)
|++|||++. ++..+|+++||+|++++|||+++.. +.++.||+||++|+||.+|+.|+.
T Consensus 9 f~llglp~~f~~d~~~L~~~yr~lq~~~HPD~~~~~~~~e~~~a~~~s~~iN~AY~tL~~p~~Ra~Yll 77 (176)
T PRK03578 9 FSLFGLPARFALDEAALDAAYRTVQAQVHPDRFAAAGDAEKRVAMQWATRANEAYQTLRDPLKRARYLL 77 (176)
T ss_pred HHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCCHHHHHHHHHHHHHHHHHHHHhCChhhHHHHHH
Confidence 789999996 6889999999999999999997632 346899999999999999999985
No 87
>PRK00294 hscB co-chaperone HscB; Provisional
Probab=99.26 E-value=4.4e-12 Score=108.17 Aligned_cols=58 Identities=29% Similarity=0.468 Sum_probs=52.4
Q ss_pred CeeeCCCCC--CCHHHHHHHHHHHHHHhCCCCCCCH---------HHHHHHHHHHhhcCCCcccccccc
Q 021275 1 MRFSESRKN--ASQDDLKKAYRKAAIKNHPDKGGDP---------EKFKELAQAYEVLSDPEKREIYDQ 58 (315)
Q Consensus 1 y~vLgv~~~--a~~~~ik~ayr~la~~~hPd~~~~~---------~~f~~i~~Ay~~L~d~~~R~~YD~ 58 (315)
|++||+++. .+..+|+++||+|++++|||++... +.|..||+||++|+||.+|+.|+.
T Consensus 7 F~l~~l~~~f~id~~~L~~~Yr~Lq~~~HPDk~~~~~~~e~~~a~~~s~~IN~AY~~L~~p~~Ra~YlL 75 (173)
T PRK00294 7 FALFDLQPSFRLDLDQLATRYRELAREVHPDRFADAPEREQRLALERSASLNEAYQTLKSPPRRARYLL 75 (173)
T ss_pred hhhcCcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCcHHHHHHHHHHHHHHHHHHHHhCChhhhHHHHH
Confidence 789999998 5689999999999999999997532 479999999999999999999995
No 88
>KOG0720 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.25 E-value=3.3e-12 Score=120.65 Aligned_cols=59 Identities=44% Similarity=0.579 Sum_probs=56.2
Q ss_pred CeeeCCCCCCCHHHHHHHHHHHHHHhCCCCCCCH---HHHHHHHHHHhhcCCCccccccccc
Q 021275 1 MRFSESRKNASQDDLKKAYRKAAIKNHPDKGGDP---EKFKELAQAYEVLSDPEKREIYDQY 59 (315)
Q Consensus 1 y~vLgv~~~a~~~~ik~ayr~la~~~hPd~~~~~---~~f~~i~~Ay~~L~d~~~R~~YD~~ 59 (315)
|.+|||+.++|+++||+.|||+|...|||+|-.+ +.|+.++.|||+|+|+++|+.||.-
T Consensus 238 YsvlGl~~d~sd~~lKk~Yrk~A~LVhPDKn~~~~A~Eafk~Lq~Afevig~~~kR~eYd~e 299 (490)
T KOG0720|consen 238 YSALGLPSDCSDADLKKNYRKKAMLVHPDKNMIPRAEEAFKKLQVAFEVIGDSVKRKEYDLE 299 (490)
T ss_pred hhhcCCCCCCCHHHHHHHHHhhceEeCCCccCChhHHHHHHHHHHHHHHhcchhhhhHHHHH
Confidence 8899999999999999999999999999999755 8999999999999999999999973
No 89
>PF01556 CTDII: DnaJ C terminal domain; InterPro: IPR002939 Molecular chaperones are a diverse family of proteins that function to protect proteins in the intracellular milieu from irreversible aggregation during synthesis and in times of cellular stress. The bacterial molecular chaperone DnaK is an enzyme that couples cycles of ATP binding, hydrolysis, and ADP release by an N-terminal ATP-hydrolizing domain to cycles of sequestration and release of unfolded proteins by a C-terminal substrate binding domain. Dimeric GrpE is the co-chaperone for DnaK, and acts as a nucleotide exchange factor, stimulating the rate of ADP release 5000-fold []. DnaK is itself a weak ATPase; ATP hydrolysis by DnaK is stimulated by its interaction with another co-chaperone, DnaJ. Thus the co-chaperones DnaJ and GrpE are capable of tightly regulating the nucleotide-bound and substrate-bound state of DnaK in ways that are necessary for the normal housekeeping functions and stress-related functions of the DnaK molecular chaperone cycle. Besides stimulating the ATPase activity of DnaK through its J-domain, DnaJ also associates with unfolded polypeptide chains and prevents their aggregation []. Thus, DnaK and DnaJ may bind to one and the same polypeptide chain to form a ternary complex. The formation of a ternary complex may result in cis-interaction of the J-domain of DnaJ with the ATPase domain of DnaK. An unfolded polypeptide may enter the chaperone cycle by associating first either with ATP-liganded DnaK or with DnaJ. DnaK interacts with both the backbone and side chains of a peptide substrate; it thus shows binding polarity and admits only L-peptide segments. In contrast, DnaJ has been shown to bind both L- and D-peptides and is assumed to interact only with the side chains of the substrate. This domain consists of the C-terminal region of the DnaJ protein. The function of this domain is unknown. It is found associated with IPR001623 from INTERPRO and IPR001305 from INTERPRO. ; GO: 0051082 unfolded protein binding, 0006457 protein folding; PDB: 2Q2G_A 2QLD_A 3AGX_A 3AGZ_A 3AGY_A 3I38_J 3LZ8_B 2B26_B 1C3G_A 1XAO_B ....
Probab=99.07 E-value=1.5e-10 Score=86.70 Aligned_cols=52 Identities=35% Similarity=0.478 Sum_probs=44.6
Q ss_pred cEEEEEecCHHHHhCCCEEEEeCCCCCeEEEecCCCceeeCCcEEEEeCCCCcc
Q 021275 256 DLFVEHTLSLTEALCGFQFVITHLDGRQLLIKSQPGEVVKPGKYNWMDVSLNLS 309 (315)
Q Consensus 256 dL~~~~~I~l~~al~G~~~~v~tldG~~~~i~~~~~~v~~pg~~~~i~~~~~~~ 309 (315)
||+++++|+++||++|++++|+||||+.+.|++|++ +++|++++|+|+|-+.
T Consensus 1 DL~~~~~I~l~~al~G~~i~i~~l~g~~~~i~ip~~--~~~g~~~~i~g~G~p~ 52 (81)
T PF01556_consen 1 DLYCTIPISLKEALLGGTISIPTLDGKTIKIKIPPG--TQPGQQLRIKGKGMPK 52 (81)
T ss_dssp EEEEEEEEEHHHHHH-EEEEEE-TTS-EEEEEETST---STT-EEEETTESEEE
T ss_pred CeEEEEEeCHHHHhCCCEEEEECCCCCEEEEeccCc--cCCCcEEeecCCCCCc
Confidence 799999999999999999999999999999999988 9999999999999753
No 90
>COG5407 SEC63 Preprotein translocase subunit Sec63 [Intracellular trafficking and secretion]
Probab=98.99 E-value=1.3e-10 Score=109.42 Aligned_cols=63 Identities=37% Similarity=0.625 Sum_probs=58.3
Q ss_pred CeeeCCCCCCCHHHHHHHHHHHHHHhCCCCCCC---H------HHHHHHHHHHhhcCCCccccccccccccc
Q 021275 1 MRFSESRKNASQDDLKKAYRKAAIKNHPDKGGD---P------EKFKELAQAYEVLSDPEKREIYDQYGEDA 63 (315)
Q Consensus 1 y~vLgv~~~a~~~~ik~ayr~la~~~hPd~~~~---~------~~f~~i~~Ay~~L~d~~~R~~YD~~g~~~ 63 (315)
|+||||+.++|..+||++||+|+.+||||+-+. . +++.+|++||+.|+|+..|..|=.||...
T Consensus 101 yEILGI~~~ts~rdik~~yr~Ls~KfhpdK~~~mvn~~rse~Ee~y~~ItkAY~~lTd~k~renyl~yGtPd 172 (610)
T COG5407 101 YEILGIDQDTSERDIKKRYRMLSMKFHPDKAPPMVNELRSEYEEKYKTITKAYGLLTDKKRRENYLNYGTPD 172 (610)
T ss_pred HHhhcccCCCcHHHHHHHHHhheeecChhhcCCCChhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhcCCCC
Confidence 799999999999999999999999999999765 1 78999999999999999999999998643
No 91
>TIGR00714 hscB Fe-S protein assembly co-chaperone HscB. This model describes the small subunit, Hsc20 (20K heat shock cognate protein) of a pair of proteins Hsc66-Hsc20, related to the DnaK-DnaJ heat shock proteins, which also serve as molecular chaperones. Hsc20, unlike DnaJ, appears not to have chaperone activity on its own, but to act solely as a regulatory subunit for Hsc66 (i.e., to be a co-chaperone). The gene for Hsc20 in E. coli, hscB, is not induced by heat shock.
Probab=98.96 E-value=6.2e-10 Score=93.72 Aligned_cols=51 Identities=29% Similarity=0.380 Sum_probs=44.7
Q ss_pred CCCHHHHHHHHHHHHHHhCCCCCCCH---------HHHHHHHHHHhhcCCCccccccccc
Q 021275 9 NASQDDLKKAYRKAAIKNHPDKGGDP---------EKFKELAQAYEVLSDPEKREIYDQY 59 (315)
Q Consensus 9 ~a~~~~ik~ayr~la~~~hPd~~~~~---------~~f~~i~~Ay~~L~d~~~R~~YD~~ 59 (315)
+.+..+|+++||+|++++|||+.+.. +.|+.||+||++|+||.+|+.|+.-
T Consensus 2 ~iD~~~L~~~yr~lq~~~HPD~~~~~~~~~~~~a~~~s~~iN~AY~~L~~p~~Ra~ylL~ 61 (157)
T TIGR00714 2 QLDTQALSLRYQDLQRQYHPDKFASGSAQEQLAAVQQSTTLNQAYQTLKDPLMRAEYMLS 61 (157)
T ss_pred CCCHHHHHHHHHHHHHHHCcCCCCCCChhhhHHHHHHHHHHHHHHHHhCChhhhHHHHHH
Confidence 35788999999999999999985421 6899999999999999999999863
No 92
>PF01556 CTDII: DnaJ C terminal domain; InterPro: IPR002939 Molecular chaperones are a diverse family of proteins that function to protect proteins in the intracellular milieu from irreversible aggregation during synthesis and in times of cellular stress. The bacterial molecular chaperone DnaK is an enzyme that couples cycles of ATP binding, hydrolysis, and ADP release by an N-terminal ATP-hydrolizing domain to cycles of sequestration and release of unfolded proteins by a C-terminal substrate binding domain. Dimeric GrpE is the co-chaperone for DnaK, and acts as a nucleotide exchange factor, stimulating the rate of ADP release 5000-fold []. DnaK is itself a weak ATPase; ATP hydrolysis by DnaK is stimulated by its interaction with another co-chaperone, DnaJ. Thus the co-chaperones DnaJ and GrpE are capable of tightly regulating the nucleotide-bound and substrate-bound state of DnaK in ways that are necessary for the normal housekeeping functions and stress-related functions of the DnaK molecular chaperone cycle. Besides stimulating the ATPase activity of DnaK through its J-domain, DnaJ also associates with unfolded polypeptide chains and prevents their aggregation []. Thus, DnaK and DnaJ may bind to one and the same polypeptide chain to form a ternary complex. The formation of a ternary complex may result in cis-interaction of the J-domain of DnaJ with the ATPase domain of DnaK. An unfolded polypeptide may enter the chaperone cycle by associating first either with ATP-liganded DnaK or with DnaJ. DnaK interacts with both the backbone and side chains of a peptide substrate; it thus shows binding polarity and admits only L-peptide segments. In contrast, DnaJ has been shown to bind both L- and D-peptides and is assumed to interact only with the side chains of the substrate. This domain consists of the C-terminal region of the DnaJ protein. The function of this domain is unknown. It is found associated with IPR001623 from INTERPRO and IPR001305 from INTERPRO. ; GO: 0051082 unfolded protein binding, 0006457 protein folding; PDB: 2Q2G_A 2QLD_A 3AGX_A 3AGZ_A 3AGY_A 3I38_J 3LZ8_B 2B26_B 1C3G_A 1XAO_B ....
Probab=98.92 E-value=4.4e-10 Score=84.17 Aligned_cols=48 Identities=21% Similarity=0.412 Sum_probs=37.0
Q ss_pred EEEEEEecccccCCcEEEEcCCcCCCCC--CCccCEEEEEEEecCCCcEE
Q 021275 205 KVLEVIVEKGMQNGQKITFPGEADEAPD--TVTGDIVFVLQQKEHPKFKR 252 (315)
Q Consensus 205 ~~~~v~Ip~G~~~G~~i~l~g~G~~~~~--~~~GDL~v~i~v~~~~~f~r 252 (315)
+.++|+||+|+++|++++|+|+|++... ..+|||||+|+|.-|..++.
T Consensus 27 ~~~~i~ip~~~~~g~~~~i~g~G~p~~~~~~~~GdL~v~~~V~~P~~ls~ 76 (81)
T PF01556_consen 27 KTIKIKIPPGTQPGQQLRIKGKGMPKPKGGGKRGDLIVKFEVEFPKKLSP 76 (81)
T ss_dssp -EEEEEETST-STT-EEEETTESEEESSSTTSBEEEEEEEEEE--SSTSH
T ss_pred CEEEEeccCccCCCcEEeecCCCCCcCCCCCCcCCEEEEEEEECCCCCCH
Confidence 4678899999999999999999998633 37999999999998776654
No 93
>PRK01773 hscB co-chaperone HscB; Provisional
Probab=98.81 E-value=3.9e-09 Score=90.08 Aligned_cols=56 Identities=21% Similarity=0.257 Sum_probs=50.0
Q ss_pred CeeeCCCCC--CCHHHHHHHHHHHHHHhCCCCCCCH---------HHHHHHHHHHhhcCCCcccccc
Q 021275 1 MRFSESRKN--ASQDDLKKAYRKAAIKNHPDKGGDP---------EKFKELAQAYEVLSDPEKREIY 56 (315)
Q Consensus 1 y~vLgv~~~--a~~~~ik~ayr~la~~~hPd~~~~~---------~~f~~i~~Ay~~L~d~~~R~~Y 56 (315)
|++||+++. .+..+++++|++|.+++|||+.... +.-..||+||.+|+||.+|+.|
T Consensus 5 F~lf~lp~~F~iD~~~L~~~y~~Lq~~~HPD~f~~~~~~eq~~a~~~ss~iN~AY~tLkdPl~RA~Y 71 (173)
T PRK01773 5 FALFDLPVDFQLDNALLSERYLALQKSLHPDNFANSSAQEQRLAMQKSAEVNDALQILKDPILRAEA 71 (173)
T ss_pred HHhcCCCCCCCCCHHHHHHHHHHHHHHhCcCcccCCCHHHHHHHHHHHHHHHHHHHHHCChHHHHHH
Confidence 678999886 8999999999999999999996432 4678999999999999999988
No 94
>PLN03165 chaperone protein dnaJ-related; Provisional
Probab=98.80 E-value=1.2e-08 Score=80.17 Aligned_cols=60 Identities=28% Similarity=0.655 Sum_probs=49.3
Q ss_pred eEEccCCCCCCcccCCceecCCCcCCceEEEEEecCCcceeEeeeeCCCCCCCceEeCCCCCCCccCCceEEEE
Q 021275 130 NVICTKCKGKGSKSGASMKCSGCQGSGMKVSIRHLGPSMIQQMQHPCNECKGTGETINDKDRCPQCKGEKVIQE 203 (315)
Q Consensus 130 ~~~C~~C~G~G~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~~C~~C~G~G~~~~~~~~C~~C~G~g~~~~ 203 (315)
.+.|..|+|+|.. +|+.|+|+|++.... ++ .++.+.+|+.|+|+|+. .|+.|+|+|++..
T Consensus 41 ~v~C~~C~GsG~~-----~C~~C~G~G~v~~~~--~g--~~q~~~~C~~C~G~Gk~-----~C~~C~G~G~~~~ 100 (111)
T PLN03165 41 TQPCFPCSGTGAQ-----VCRFCVGSGNVTVEL--GG--GEKEVSKCINCDGAGSL-----TCTTCQGSGIQPR 100 (111)
T ss_pred CCCCCCCCCCCCc-----CCCCCcCcCeEEEEe--CC--cEEEEEECCCCCCccee-----eCCCCCCCEEEee
Confidence 4789999999983 799999999876443 32 25678999999999974 5999999998765
No 95
>PRK14299 chaperone protein DnaJ; Provisional
Probab=98.73 E-value=7.3e-09 Score=95.98 Aligned_cols=55 Identities=16% Similarity=0.203 Sum_probs=47.7
Q ss_pred EEEEEecccccCCcEEEEcCCcCCCCCCCccCEEEEEEEecCCCcEEeCCcEEEE
Q 021275 206 VLEVIVEKGMQNGQKITFPGEADEAPDTVTGDIVFVLQQKEHPKFKRKGDDLFVE 260 (315)
Q Consensus 206 ~~~v~Ip~G~~~G~~i~l~g~G~~~~~~~~GDL~v~i~v~~~~~f~r~g~dL~~~ 260 (315)
.++|+||+++++|++++|+|+|++..++..|||||+|+|..|+.++.++.+|+.+
T Consensus 228 ~~~v~ip~~~~~g~~~rl~g~G~p~~~~~~GDL~v~~~V~~P~~l~~~~~~~l~~ 282 (291)
T PRK14299 228 PVEVTIPPRTQAGRKLRLKGKGWPRGPAGRGDQYAEVRITIPTRPTPEEERLYKQ 282 (291)
T ss_pred CEEEEeCCCcCCCCEEEECCCCCCCCCCCCCCEEEEEEEECCCCCCHHHHHHHHH
Confidence 3678999999999999999999986556689999999999999998887766544
No 96
>KOG0712 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.67 E-value=3.8e-08 Score=91.44 Aligned_cols=128 Identities=22% Similarity=0.408 Sum_probs=83.1
Q ss_pred eeeeeeccccceeeEeecee-eEEccCCCCCCcccC-----------CceecCCCcCCceEEEEEecCCcceeEeeeeCC
Q 021275 110 LKVSLEDLYNGTSKKLSLSR-NVICTKCKGKGSKSG-----------ASMKCSGCQGSGMKVSIRHLGPSMIQQMQHPCN 177 (315)
Q Consensus 110 ~~~~l~e~~~G~~~~~~~~~-~~~C~~C~G~G~~~~-----------~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~~C~ 177 (315)
+.++..-+|.-|........ ...|+.|.|+|.... .+..|..|+|+|..+ ...+.|+
T Consensus 122 l~l~~~~iCs~C~GsGgksg~~~~C~~C~GsGv~~~~~~~gPg~~qs~q~~C~~C~G~G~~~-----------~~kd~C~ 190 (337)
T KOG0712|consen 122 LFLSRNFICSKCSGSGGKSGSAPKCTTCRGSGVQTRTRQMGPGMVQSPQLVCDSCNGSGETI-----------SLKDRCK 190 (337)
T ss_pred eecccCccCCcCCCCCCCCCCCCCCCCCCCCCceeEEEeccccccccceeEeccCCCccccc-----------cccccCc
Confidence 44444444544433333332 246999999998653 125699999999532 3578999
Q ss_pred CCCCCceEeCCC---CCCCc--------------------------------------------------------cCCc
Q 021275 178 ECKGTGETINDK---DRCPQ--------------------------------------------------------CKGE 198 (315)
Q Consensus 178 ~C~G~G~~~~~~---~~C~~--------------------------------------------------------C~G~ 198 (315)
.|.|++.+...+ ..-+. |.+.
T Consensus 191 ~C~G~~~v~~kkil~v~V~~g~~~~~ki~f~geadea~g~~pgD~vl~i~~k~h~~F~Rrg~dL~~~~~i~l~eal~G~~ 270 (337)
T KOG0712|consen 191 TCSGAKVVREKKILEVHVEPGMPHGQKITFKGEADEAPGTKPGDVVLLIDQKEHPGFDRRGSDLYRKLTISLVEALCGFQ 270 (337)
T ss_pred ccccchhhhhhheeeccccCCCcccceeeeeeeeeecCCCcCccEEEEecccccccceecccccceeeecchhhccccce
Confidence 999995432200 00011 1111
Q ss_pred eEE--EEeEEEEEEeccc--ccCCcEEEEcCCcCCCCCCCccCEEEEEEEecCC
Q 021275 199 KVI--QEKKVLEVIVEKG--MQNGQKITFPGEADEAPDTVTGDIVFVLQQKEHP 248 (315)
Q Consensus 199 g~~--~~~~~~~v~Ip~G--~~~G~~i~l~g~G~~~~~~~~GDL~v~i~v~~~~ 248 (315)
... .....+++.++|| +.+|++.++.|+||+..+...|||||.+.|+-++
T Consensus 271 ~~~~~ldGr~l~~~~~pg~vi~~~~~~~v~~~gmp~~~~~~g~lyi~~~v~fp~ 324 (337)
T KOG0712|consen 271 RVWETLDGRLLKLSSKPGEVISPGDTKRVEGEGMPIFRNPKGDLYIKFEVKFPK 324 (337)
T ss_pred EEEEccCCceEEEecCCCceeChhHEEeecCCCcccccCCCCcEEEEEEEEcCC
Confidence 111 1123567999998 9999999999999998655599999999999776
No 97
>KOG1150 consensus Predicted molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.60 E-value=2.2e-08 Score=85.32 Aligned_cols=57 Identities=30% Similarity=0.489 Sum_probs=51.7
Q ss_pred CeeeCCCCCCCHHHHHHHHHHHHHHhCCCCCCCH-----HHHHHHHHHHhhcCCCccccccc
Q 021275 1 MRFSESRKNASQDDLKKAYRKAAIKNHPDKGGDP-----EKFKELAQAYEVLSDPEKREIYD 57 (315)
Q Consensus 1 y~vLgv~~~a~~~~ik~ayr~la~~~hPd~~~~~-----~~f~~i~~Ay~~L~d~~~R~~YD 57 (315)
|+||.|.++.+.++||+.||+|++..|||+|+++ ..|.-+.+||..|-|+.-|..-+
T Consensus 56 feVLqIdpev~~edikkryRklSilVHPDKN~Dd~~rAqkAFdivkKA~k~l~n~~~rkr~~ 117 (250)
T KOG1150|consen 56 FEVLQIDPEVTDEDIKKRYRKLSILVHPDKNPDDAERAQKAFDIVKKAYKLLENDKIRKRCL 117 (250)
T ss_pred HHHHhcCCCCCHHHHHHHHHhhheeecCCCCcccHHHHHHHHHHHHHHHHHHhCHHHHHHHH
Confidence 7899999999999999999999999999999976 68999999999999987655443
No 98
>KOG0723 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.58 E-value=9.3e-08 Score=73.37 Aligned_cols=48 Identities=27% Similarity=0.505 Sum_probs=45.6
Q ss_pred eeCCCCCCCHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHhhcCCC
Q 021275 3 FSESRKNASQDDLKKAYRKAAIKNHPDKGGDPEKFKELAQAYEVLSDP 50 (315)
Q Consensus 3 vLgv~~~a~~~~ik~ayr~la~~~hPd~~~~~~~f~~i~~Ay~~L~d~ 50 (315)
||||+++++.+.||+|+||+....|||+..++..-.+||||+++|...
T Consensus 61 IL~v~~s~~k~KikeaHrriM~~NHPD~GGSPYlAsKINEAKdlLe~~ 108 (112)
T KOG0723|consen 61 ILGVTPSLDKDKIKEAHRRIMLANHPDRGGSPYLASKINEAKDLLEGT 108 (112)
T ss_pred HhCCCccccHHHHHHHHHHHHHcCCCcCCCCHHHHHHHHHHHHHHhcc
Confidence 899999999999999999999999999999999999999999999743
No 99
>COG5269 ZUO1 Ribosome-associated chaperone zuotin [Translation, ribosomal structure and biogenesis / Posttranslational modification, protein turnover, chaperones]
Probab=98.52 E-value=4.6e-08 Score=86.98 Aligned_cols=60 Identities=35% Similarity=0.371 Sum_probs=52.7
Q ss_pred CeeeCCCC---CCCHHHHHHHHHHHHHHhCCCCCC------CHHHHHHHHHHHhhcCCCcccccccccc
Q 021275 1 MRFSESRK---NASQDDLKKAYRKAAIKNHPDKGG------DPEKFKELAQAYEVLSDPEKREIYDQYG 60 (315)
Q Consensus 1 y~vLgv~~---~a~~~~ik~ayr~la~~~hPd~~~------~~~~f~~i~~Ay~~L~d~~~R~~YD~~g 60 (315)
|.+||++. -|++.+|.+|.++...+||||+.. ..+.|+.|+.||++|+|+.+|.+||..-
T Consensus 46 Ya~lgLskyR~ka~~~qi~kah~kkv~kyHPDk~aa~g~~~~d~fFk~iqkA~evL~D~~~R~qyDS~d 114 (379)
T COG5269 46 YALLGLSKYRTKAIPPQILKAHKKKVYKYHPDKTAAGGNKGCDEFFKLIQKAREVLGDRKLRLQYDSND 114 (379)
T ss_pred HHHhchHhhhcCCCcHHHHHHHHHHHHHhCccchhccCCCCcHHHHHHHHHHHHHhccHHHHhhccccc
Confidence 67899986 478899999999999999999962 1289999999999999999999999743
No 100
>PRK10266 curved DNA-binding protein CbpA; Provisional
Probab=98.50 E-value=8.4e-08 Score=89.56 Aligned_cols=52 Identities=27% Similarity=0.374 Sum_probs=43.6
Q ss_pred EEEEEecccccCCcEEEEcCCcCCCCCCCccCEEEEEEEecCCCcEEeCCcEE
Q 021275 206 VLEVIVEKGMQNGQKITFPGEADEAPDTVTGDIVFVLQQKEHPKFKRKGDDLF 258 (315)
Q Consensus 206 ~~~v~Ip~G~~~G~~i~l~g~G~~~~~~~~GDL~v~i~v~~~~~f~r~g~dL~ 258 (315)
.++|+||+|+++|++++|+|+|++.++ ..|||||+|+|..|+.+.-+...|+
T Consensus 236 ~v~v~ip~g~~~g~~~ri~g~G~p~~~-~~GdL~v~~~v~~P~~l~~~q~~l~ 287 (306)
T PRK10266 236 SILLTIPPGSQAGQRLRVKGKGLVSKK-QTGDLYAVLKIVMPPKPDEKTAALW 287 (306)
T ss_pred cEEEEeCCCcCCCCEEEECCCCCCCCC-CCCCEEEEEEEECCCCCCHHHHHHH
Confidence 378999999999999999999998654 5799999999999988765544443
No 101
>PF00684 DnaJ_CXXCXGXG: DnaJ central domain; InterPro: IPR001305 The hsp70 chaperone machine performs many diverse roles in the cell, including folding of nascent proteins, translocation of polypeptides across organelle membranes, coordinating responses to stress, and targeting selected proteins for degradation. DnaJ is a member of the hsp40 family of molecular chaperones, which is also called the J-protein family, the members of which regulate the activity of hsp70s. DnaJ (hsp40) binds to DnaK (hsp70) and stimulates its ATPase activity, generating the ADP-bound state of DnaK, which interacts stably with the polypeptide substrate []. Besides stimulating the ATPase activity of DnaK through its J-domain, DnaJ also associates with unfolded polypeptide chains and prevents their aggregation []. DnaJ consists of an N-terminal conserved domain (called 'J' domain) of about 70 amino acid residues, a glycine and phenylalanine-rich domain ('G/F' domain), a central cysteine rich domain (CR-type zinc finger) containing four repeats of a CXXCXGXG motif which can coordinate two zinc atom and a C-terminal domain (CTD) []. This entry represents the central cysteine-rich (CR) domain of DnaJ proteins. This central cysteine rich domain (CR-type zinc finger) has an overall V-shaped extended beta-hairpin topology and contains four repeats of the motif CXXCXGXG where X is any amino acid. The isolated cysteine rich domain folds in zinc dependent fashion. Each set of two repeats binds one unit of zinc. Although this domain has been implicated in substrate binding, no evidence of specific interaction between the isolated DnaJ cysteine rich domain and various hydrophobic peptides has been found [].; GO: 0031072 heat shock protein binding, 0051082 unfolded protein binding; PDB: 1NLT_A 2CTT_A 1EXK_A.
Probab=98.34 E-value=2.5e-07 Score=66.44 Aligned_cols=53 Identities=34% Similarity=0.846 Sum_probs=35.8
Q ss_pred cccceeeEeeceeeEEccCCCCCCcccC----------CceecCCCcCCceEEEEEecCCcceeEe-eeeCCCCCCCc
Q 021275 117 LYNGTSKKLSLSRNVICTKCKGKGSKSG----------ASMKCSGCQGSGMKVSIRHLGPSMIQQM-QHPCNECKGTG 183 (315)
Q Consensus 117 ~~~G~~~~~~~~~~~~C~~C~G~G~~~~----------~~~~C~~C~G~G~~~~~~~~~~g~~~~~-~~~C~~C~G~G 183 (315)
.|.|...+ +......|+.|+|+|.... ...+|+.|+|+| +.+ ..+|+.|+|+|
T Consensus 3 ~C~G~G~~-~~~~~~~C~~C~G~G~~~~~~~~~~~~~~~~~~C~~C~G~G-------------~~i~~~~C~~C~G~g 66 (66)
T PF00684_consen 3 KCNGTGAK-PGKKPKTCPQCNGSGQVTRRQQTPGGVFQMQQTCPKCGGTG-------------KIIEKDPCKTCKGSG 66 (66)
T ss_dssp CCTTTSB--STTT-EE-TTSSSSSEEEEEEESSSTTEEEEEE-TTTSSSS-------------EE-TSSB-SSSTTSS
T ss_pred cCCCcccC-CCCCCcCCcCCCCeeEEEEEEeCCCeEEEEEEECCCCccee-------------eEECCCCCCCCCCcC
Confidence 45665554 4445679999999999743 236799999999 445 88999999986
No 102
>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]
Probab=98.32 E-value=5e-07 Score=92.94 Aligned_cols=48 Identities=31% Similarity=0.495 Sum_probs=41.5
Q ss_pred CeeeCCCCC----CCHHHHHHHHHHHHHHhCCCCCCCH-HHHHHHHHHHhhcC
Q 021275 1 MRFSESRKN----ASQDDLKKAYRKAAIKNHPDKGGDP-EKFKELAQAYEVLS 48 (315)
Q Consensus 1 y~vLgv~~~----a~~~~ik~ayr~la~~~hPd~~~~~-~~f~~i~~Ay~~L~ 48 (315)
|+||.|+-+ -..+.||++|+|||.+||||+||.- ++|.++|+|||.|+
T Consensus 1284 ~eiL~i~l~n~~hD~~~KirrqY~kLA~kYHPDKNPEGRemFe~VnKAYE~L~ 1336 (2235)
T KOG1789|consen 1284 REILSVDLTNEEHDKPAKIRRQYYKLAAKYHPDKNPEGREMFERVNKAYELLS 1336 (2235)
T ss_pred HHHhccccCCCCcccHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHHH
Confidence 567777743 2347899999999999999999976 99999999999998
No 103
>TIGR02642 phage_xxxx uncharacterized phage protein. This uncharacterized protein is found in prophage regions of Shewanella oneidensis MR-1, Vibrio vulnificus YJ016, Yersinia pseudotuberculosis IP 32953, and Aeromonas hydrophila ATCC7966. It appears to have regions of sequence similarity to phage lambda antitermination protein Q.
Probab=98.31 E-value=8.6e-07 Score=76.13 Aligned_cols=51 Identities=22% Similarity=0.454 Sum_probs=40.1
Q ss_pred eeeCCCCCCCceEeCCCCCCCccCCceEEEEeEEEEEEecccccCCcEEEEc
Q 021275 173 QHPCNECKGTGETINDKDRCPQCKGEKVIQEKKVLEVIVEKGMQNGQKITFP 224 (315)
Q Consensus 173 ~~~C~~C~G~G~~~~~~~~C~~C~G~g~~~~~~~~~v~Ip~G~~~G~~i~l~ 224 (315)
+.+|+.|+|+|+++...++|+.|+|.|.+..+..+.+++ .|+.+|++|++.
T Consensus 99 ~~~C~~C~G~G~~i~~~~~C~~C~G~G~v~~~~~~~~k~-~g~~~g~~it~~ 149 (186)
T TIGR02642 99 SCKCPRCRGTGLIQRRQRECDTCAGTGRFRPTVEDLLKS-FGVDSGAAIVLK 149 (186)
T ss_pred CCcCCCCCCeeEEecCCCCCCCCCCccEEeeeEEEEEEe-eeccCCceeeHH
Confidence 345666666666665446788888888888899999999 999999999875
No 104
>PRK09430 djlA Dna-J like membrane chaperone protein; Provisional
Probab=98.28 E-value=4.7e-07 Score=82.77 Aligned_cols=32 Identities=28% Similarity=0.466 Sum_probs=30.6
Q ss_pred CeeeCCCCCCCHHHHHHHHHHHHHHhCCCCCC
Q 021275 1 MRFSESRKNASQDDLKKAYRKAAIKNHPDKGG 32 (315)
Q Consensus 1 y~vLgv~~~a~~~~ik~ayr~la~~~hPd~~~ 32 (315)
|+||||+++||.+|||+|||+|+++||||+..
T Consensus 203 y~vLgv~~~as~~eIk~aYr~L~~~~HPDk~~ 234 (267)
T PRK09430 203 YKVLGVSESDDDQEIKRAYRKLMSEHHPDKLV 234 (267)
T ss_pred HHHcCCCCCCCHHHHHHHHHHHHHHhCcCCCC
Confidence 78999999999999999999999999999964
No 105
>KOG0568 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.22 E-value=1.1e-06 Score=76.69 Aligned_cols=49 Identities=27% Similarity=0.596 Sum_probs=44.5
Q ss_pred CeeeCCCCCCCHHHHHHHHHHHHHHhCCCCCCCH---HHHHHHHHHHh-hcCC
Q 021275 1 MRFSESRKNASQDDLKKAYRKAAIKNHPDKGGDP---EKFKELAQAYE-VLSD 49 (315)
Q Consensus 1 y~vLgv~~~a~~~~ik~ayr~la~~~hPd~~~~~---~~f~~i~~Ay~-~L~d 49 (315)
|++|||...|+.++++.||..||+++|||...+. +.|.+|.+||. ||+.
T Consensus 50 fril~v~e~~~adevr~af~~lakq~hpdsgs~~adaa~f~qideafrkvlq~ 102 (342)
T KOG0568|consen 50 FRILGVEEGADADEVREAFHDLAKQVHPDSGSEEADAARFIQIDEAFRKVLQE 102 (342)
T ss_pred HHHhcccccCchhHHHHHHHHHHHHcCCCCCCccccHHHHHHHHHHHHHHHHH
Confidence 6899999999999999999999999999987543 89999999998 7763
No 106
>COG1107 Archaea-specific RecJ-like exonuclease, contains DnaJ-type Zn finger domain [DNA replication, recombination, and repair]
Probab=98.12 E-value=1.5e-06 Score=84.97 Aligned_cols=72 Identities=26% Similarity=0.679 Sum_probs=37.2
Q ss_pred EEccCCCCCCcccCCceecCCCcCCceEEEEEe--------cCCcceeEeeeeCCCCCCCceEeCCCCCCCccCCceEEE
Q 021275 131 VICTKCKGKGSKSGASMKCSGCQGSGMKVSIRH--------LGPSMIQQMQHPCNECKGTGETINDKDRCPQCKGEKVIQ 202 (315)
Q Consensus 131 ~~C~~C~G~G~~~~~~~~C~~C~G~G~~~~~~~--------~~~g~~~~~~~~C~~C~G~G~~~~~~~~C~~C~G~g~~~ 202 (315)
..|+.|+|+|........|+.|+|+|+.-.+.. .+.-++.....+|+.|+|+|.+.- ...|+.|.|.|.+.
T Consensus 3 ~~C~~C~g~G~i~v~~e~c~vc~gtG~~~~~d~k~~~~~~~~~~D~~~~~~~pc~~c~gkG~V~v-~~~c~~c~G~gkv~ 81 (715)
T COG1107 3 KKCPECGGKGKIVVGEEECPVCHGTGFSDDFDPKGVANLSRETVDLFASFEIPCPKCRGKGTVTV-YDTCPECGGTGKVL 81 (715)
T ss_pred ccccccCCCceEeeeeeecccccccccccccChhhhhhhhhccccccccCCCCCCeeccceeEEE-EeecccCCCceeEE
Confidence 356666666666555566666666665421110 011111223446666666666532 35666666665544
Q ss_pred E
Q 021275 203 E 203 (315)
Q Consensus 203 ~ 203 (315)
.
T Consensus 82 ~ 82 (715)
T COG1107 82 T 82 (715)
T ss_pred e
Confidence 3
No 107
>TIGR03835 termin_org_DnaJ terminal organelle assembly protein TopJ. This model describes TopJ (MG_200, CbpA), a DnaJ homolog and probable assembly protein of the Mycoplasma terminal organelle. The terminal organelle is involved in both cytadherence and gliding motility.
Probab=98.12 E-value=4.3e-06 Score=84.57 Aligned_cols=65 Identities=40% Similarity=0.717 Sum_probs=60.8
Q ss_pred CeeeCCCCCCCHHHHHHHHHHHHHHhCCCCCCCH---HHHHHHHHHHhhcCCCccccccccccccccc
Q 021275 1 MRFSESRKNASQDDLKKAYRKAAIKNHPDKGGDP---EKFKELAQAYEVLSDPEKREIYDQYGEDALK 65 (315)
Q Consensus 1 y~vLgv~~~a~~~~ik~ayr~la~~~hPd~~~~~---~~f~~i~~Ay~~L~d~~~R~~YD~~g~~~~~ 65 (315)
|+||||+++|+.++||+|||+||++||||+++++ ++|++|++||++|+||.+|+.||+||..+..
T Consensus 5 YeVLGVs~dAS~eEIKKAYRKLAKKyHPDKn~~~eAeekFqeINEAYEVLSDP~KRa~YD~fG~aG~d 72 (871)
T TIGR03835 5 YEVLGIDRDADEQEIKKAFRKLAKKYHPDRNKAPDAASIFAEINEANDVLSNPKKRANYDKYGHDGVD 72 (871)
T ss_pred hHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCChhHHHHHHHHHHHHHHhCCHHHHHHHhhhcccccc
Confidence 8999999999999999999999999999998754 6899999999999999999999999987653
No 108
>KOG2813 consensus Predicted molecular chaperone, contains DnaJ domain [Posttranslational modification, protein turnover, chaperones]
Probab=97.88 E-value=1.4e-05 Score=72.79 Aligned_cols=70 Identities=27% Similarity=0.642 Sum_probs=47.1
Q ss_pred ccccceeeEeeceeeEEccCCCCCCcccC---Cc-----------------eecCCCcCCceEEEEEecCCcceeEeeee
Q 021275 116 DLYNGTSKKLSLSRNVICTKCKGKGSKSG---AS-----------------MKCSGCQGSGMKVSIRHLGPSMIQQMQHP 175 (315)
Q Consensus 116 e~~~G~~~~~~~~~~~~C~~C~G~G~~~~---~~-----------------~~C~~C~G~G~~~~~~~~~~g~~~~~~~~ 175 (315)
+.|++|.... ...|+.|+|.|..+. +. ..|.-|+|+| ..+
T Consensus 188 ~~ch~c~gRG----~~vc~gc~g~G~~~y~~~~~m~c~sc~G~~~~k~gt~~~C~~C~G~G----------------~~~ 247 (406)
T KOG2813|consen 188 TFCHACLGRG----AMVCHGCSGSGSNSYGIGTPMHCMSCTGVPPPKIGTHDLCYMCHGRG----------------IKE 247 (406)
T ss_pred hhhhcccCCC----ceeccCcCCCCccccccCcceecccccCCCCCCCCccchhhhccCCC----------------ccc
Confidence 4555554332 567999999985321 22 3366666666 567
Q ss_pred CCCCCCCceEeCCCCCCCccCCceEEEEeEEEEEE
Q 021275 176 CNECKGTGETINDKDRCPQCKGEKVIQEKKVLEVI 210 (315)
Q Consensus 176 C~~C~G~G~~~~~~~~C~~C~G~g~~~~~~~~~v~ 210 (315)
|++|.|+|. .+|.+|.|.|.......+.|.
T Consensus 248 C~tC~grG~-----k~C~TC~gtgsll~~t~~vV~ 277 (406)
T KOG2813|consen 248 CHTCKGRGK-----KPCTTCSGTGSLLNYTRIVVY 277 (406)
T ss_pred CCcccCCCC-----cccccccCccceeeeEEEEEE
Confidence 888888886 689999988877776665544
No 109
>PLN03165 chaperone protein dnaJ-related; Provisional
Probab=97.51 E-value=6.6e-05 Score=59.17 Aligned_cols=49 Identities=31% Similarity=0.704 Sum_probs=37.0
Q ss_pred ccccceeeEeeceeeEEccCCCCCCcccC-----C--ceecCCCcCCceEEEEEecCCcceeEeeeeCCCCCCCceEeC
Q 021275 116 DLYNGTSKKLSLSRNVICTKCKGKGSKSG-----A--SMKCSGCQGSGMKVSIRHLGPSMIQQMQHPCNECKGTGETIN 187 (315)
Q Consensus 116 e~~~G~~~~~~~~~~~~C~~C~G~G~~~~-----~--~~~C~~C~G~G~~~~~~~~~~g~~~~~~~~C~~C~G~G~~~~ 187 (315)
..|.|... ..|+.|+|+|.... . ..+|+.|+|+| +..|+.|+|+|.+..
T Consensus 45 ~~C~GsG~-------~~C~~C~G~G~v~~~~~g~~q~~~~C~~C~G~G----------------k~~C~~C~G~G~~~~ 100 (111)
T PLN03165 45 FPCSGTGA-------QVCRFCVGSGNVTVELGGGEKEVSKCINCDGAG----------------SLTCTTCQGSGIQPR 100 (111)
T ss_pred CCCCCCCC-------cCCCCCcCcCeEEEEeCCcEEEEEECCCCCCcc----------------eeeCCCCCCCEEEee
Confidence 45666554 28999999998632 1 35799999999 235999999999764
No 110
>COG1107 Archaea-specific RecJ-like exonuclease, contains DnaJ-type Zn finger domain [DNA replication, recombination, and repair]
Probab=97.35 E-value=0.00024 Score=69.93 Aligned_cols=57 Identities=28% Similarity=0.689 Sum_probs=40.8
Q ss_pred cccceeeEeeceeeEEccCCCCCCcccC------------------C-ceecCCCcCCceEEEEEecCCcceeEeeeeCC
Q 021275 117 LYNGTSKKLSLSRNVICTKCKGKGSKSG------------------A-SMKCSGCQGSGMKVSIRHLGPSMIQQMQHPCN 177 (315)
Q Consensus 117 ~~~G~~~~~~~~~~~~C~~C~G~G~~~~------------------~-~~~C~~C~G~G~~~~~~~~~~g~~~~~~~~C~ 177 (315)
.|.|.++. .+ ....|+.|+|+|.... . ..+|+.|+|+|.+ .+..+|+
T Consensus 7 ~C~g~G~i-~v-~~e~c~vc~gtG~~~~~d~k~~~~~~~~~~D~~~~~~~pc~~c~gkG~V------------~v~~~c~ 72 (715)
T COG1107 7 ECGGKGKI-VV-GEEECPVCHGTGFSDDFDPKGVANLSRETVDLFASFEIPCPKCRGKGTV------------TVYDTCP 72 (715)
T ss_pred ccCCCceE-ee-eeeecccccccccccccChhhhhhhhhccccccccCCCCCCeeccceeE------------EEEeecc
Confidence 46664433 22 3467999999998632 1 1579999999953 3468999
Q ss_pred CCCCCceEeC
Q 021275 178 ECKGTGETIN 187 (315)
Q Consensus 178 ~C~G~G~~~~ 187 (315)
.|.|+|++..
T Consensus 73 ~c~G~gkv~~ 82 (715)
T COG1107 73 ECGGTGKVLT 82 (715)
T ss_pred cCCCceeEEe
Confidence 9999998865
No 111
>KOG2813 consensus Predicted molecular chaperone, contains DnaJ domain [Posttranslational modification, protein turnover, chaperones]
Probab=96.94 E-value=0.00049 Score=62.98 Aligned_cols=60 Identities=35% Similarity=0.841 Sum_probs=42.7
Q ss_pred EEccCCCCCCcccCCceecCCCcCCceE--------EEEEecC---CcceeEeeeeCCCCCCCceEeCCCCCCCccCCce
Q 021275 131 VICTKCKGKGSKSGASMKCSGCQGSGMK--------VSIRHLG---PSMIQQMQHPCNECKGTGETINDKDRCPQCKGEK 199 (315)
Q Consensus 131 ~~C~~C~G~G~~~~~~~~C~~C~G~G~~--------~~~~~~~---~g~~~~~~~~C~~C~G~G~~~~~~~~C~~C~G~g 199 (315)
..|..|.|+|. +.|+.|+|.|.- -.....| ++ -...+.|..|+|+|. .+|++|+|+|
T Consensus 188 ~~ch~c~gRG~-----~vc~gc~g~G~~~y~~~~~m~c~sc~G~~~~k--~gt~~~C~~C~G~G~-----~~C~tC~grG 255 (406)
T KOG2813|consen 188 TFCHACLGRGA-----MVCHGCSGSGSNSYGIGTPMHCMSCTGVPPPK--IGTHDLCYMCHGRGI-----KECHTCKGRG 255 (406)
T ss_pred hhhhcccCCCc-----eeccCcCCCCccccccCcceecccccCCCCCC--CCccchhhhccCCCc-----ccCCcccCCC
Confidence 56999999995 569999999931 1112222 11 012467999999997 7899999998
Q ss_pred EEE
Q 021275 200 VIQ 202 (315)
Q Consensus 200 ~~~ 202 (315)
.+.
T Consensus 256 ~k~ 258 (406)
T KOG2813|consen 256 KKP 258 (406)
T ss_pred Ccc
Confidence 764
No 112
>TIGR02642 phage_xxxx uncharacterized phage protein. This uncharacterized protein is found in prophage regions of Shewanella oneidensis MR-1, Vibrio vulnificus YJ016, Yersinia pseudotuberculosis IP 32953, and Aeromonas hydrophila ATCC7966. It appears to have regions of sequence similarity to phage lambda antitermination protein Q.
Probab=96.36 E-value=0.0051 Score=53.01 Aligned_cols=28 Identities=29% Similarity=0.832 Sum_probs=14.7
Q ss_pred eEEccCCCCCCcccCCceecCCCcCCce
Q 021275 130 NVICTKCKGKGSKSGASMKCSGCQGSGM 157 (315)
Q Consensus 130 ~~~C~~C~G~G~~~~~~~~C~~C~G~G~ 157 (315)
...|+.|+|+|.......+|+.|+|+|.
T Consensus 99 ~~~C~~C~G~G~~i~~~~~C~~C~G~G~ 126 (186)
T TIGR02642 99 SCKCPRCRGTGLIQRRQRECDTCAGTGR 126 (186)
T ss_pred CCcCCCCCCeeEEecCCCCCCCCCCccE
Confidence 4556666666654433344555555554
No 113
>PF03656 Pam16: Pam16; InterPro: IPR005341 The Pam16 protein is the fifth essential subunit of the pre-sequence translocase-associated protein import motor (PAM) []. In Saccharomyces cerevisiae (Baker's yeast), Pam16 is required for preprotein translocation into the matrix, but not for protein insertion into the inner membrane [].; PDB: 2GUZ_J.
Probab=96.14 E-value=0.0088 Score=48.39 Aligned_cols=48 Identities=23% Similarity=0.365 Sum_probs=38.5
Q ss_pred eeeCCCCCCCHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHhhcCC
Q 021275 2 RFSESRKNASQDDLKKAYRKAAIKNHPDKGGDPEKFKELAQAYEVLSD 49 (315)
Q Consensus 2 ~vLgv~~~a~~~~ik~ayr~la~~~hPd~~~~~~~f~~i~~Ay~~L~d 49 (315)
.||||++.++.++|.+.|.+|-...+|++.++...-.+|..|.|.|..
T Consensus 62 ~ILnv~~~~~~eeI~k~y~~Lf~~Nd~~kGGSfYLQSKV~rAKErl~~ 109 (127)
T PF03656_consen 62 QILNVKEELSREEIQKRYKHLFKANDPSKGGSFYLQSKVFRAKERLEQ 109 (127)
T ss_dssp HHHT--G--SHHHHHHHHHHHHHHT-CCCTS-HHHHHHHHHHHHHHHH
T ss_pred HHcCCCCccCHHHHHHHHHHHHhccCCCcCCCHHHHHHHHHHHHHHHH
Confidence 589999999999999999999999999999888888899999998863
No 114
>KOG3192 consensus Mitochondrial J-type chaperone [Posttranslational modification, protein turnover, chaperones]
Probab=96.06 E-value=0.0049 Score=51.01 Aligned_cols=52 Identities=37% Similarity=0.512 Sum_probs=41.1
Q ss_pred CCCCCCHHHHHHHHHHHHHHhCCCCCCCH---------HHHHHHHHHHhhcCCCccccccc
Q 021275 6 SRKNASQDDLKKAYRKAAIKNHPDKGGDP---------EKFKELAQAYEVLSDPEKREIYD 57 (315)
Q Consensus 6 v~~~a~~~~ik~ayr~la~~~hPd~~~~~---------~~f~~i~~Ay~~L~d~~~R~~YD 57 (315)
++...+++-++..|.-..++.|||+...+ +...++|+||.+|.||-+|+.|=
T Consensus 18 ~~~~~~p~~l~~~~~~~skkL~~d~~~~~~~~~~d~a~eqSa~lnkAY~TLk~pL~RA~Yi 78 (168)
T KOG3192|consen 18 LSFKIDPDKLKEKYTDISKKLHPDRPGLSFAGDTDQASEQSAELNKAYDTLKDPLARARYL 78 (168)
T ss_pred cCCCCCcchhhHHHHHHHHhhCcccccccccccchhHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 34445566666688889999999984322 56889999999999999999984
No 115
>COG1076 DjlA DnaJ-domain-containing proteins 1 [Posttranslational modification, protein turnover, chaperones]
Probab=94.93 E-value=0.011 Score=50.53 Aligned_cols=47 Identities=36% Similarity=0.508 Sum_probs=40.3
Q ss_pred HHHHHHHHHHHHHHhCCCCCCCH---------HHHHHHHHHHhhcCCCcccccccc
Q 021275 12 QDDLKKAYRKAAIKNHPDKGGDP---------EKFKELAQAYEVLSDPEKREIYDQ 58 (315)
Q Consensus 12 ~~~ik~ayr~la~~~hPd~~~~~---------~~f~~i~~Ay~~L~d~~~R~~YD~ 58 (315)
.+.++..|+.+.+.+|||+...+ +.+..++.||.+|.||-+|+.|=.
T Consensus 17 ~~~l~~~~~~~~~~~~~dr~~~~~~~~~~~~l~~~~~~~~a~~tLk~~l~ra~~~l 72 (174)
T COG1076 17 LDALKLQYRELQRAYHPDRFGKASEAEQRKALQQSAEVNPAYQTLKDPLLRAEYLL 72 (174)
T ss_pred HhHhhhhHHHHHHhhCcccccccchHHHHHHHHHHHHhcchHHHHHHHHHHHHHHH
Confidence 35688999999999999997543 578999999999999999998853
No 116
>KOG0715 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=91.67 E-value=0.072 Score=49.36 Aligned_cols=60 Identities=25% Similarity=0.591 Sum_probs=42.7
Q ss_pred eeccccceeeEeeceeeEEccCCCCCCcccC------CceecCCCcCCceEEEEEecCCcceeEeeeeCCCCCCCceEeC
Q 021275 114 LEDLYNGTSKKLSLSRNVICTKCKGKGSKSG------ASMKCSGCQGSGMKVSIRHLGPSMIQQMQHPCNECKGTGETIN 187 (315)
Q Consensus 114 l~e~~~G~~~~~~~~~~~~C~~C~G~G~~~~------~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~~C~~C~G~G~~~~ 187 (315)
..+.|.|...+ .......|..|.|+|.... ...+|+.|.|.|. .....|..|.|.|.+..
T Consensus 166 ~~~t~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~c~~~~~-------------~~~~~c~~~~g~~~v~~ 231 (288)
T KOG0715|consen 166 DCETCFGSGAE-EGAKRESCKTCSGRGLVSNPKEDPFILYTCSYCLGRGL-------------VLRDNCQACSGAGQVRR 231 (288)
T ss_pred ccccccCcCcc-cccccccchhhhCcccccccccCCcceeecccccccce-------------eccchHHHhhcchhhhh
Confidence 34566666633 5667789999999994332 1237999999994 33455999999996654
No 117
>PF11833 DUF3353: Protein of unknown function (DUF3353); InterPro: IPR021788 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 205 to 258 amino acids in length.
Probab=90.38 E-value=0.57 Score=40.81 Aligned_cols=38 Identities=18% Similarity=0.369 Sum_probs=31.8
Q ss_pred CCCCCHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHhhcC
Q 021275 7 RKNASQDDLKKAYRKAAIKNHPDKGGDPEKFKELAQAYEVLS 48 (315)
Q Consensus 7 ~~~a~~~~ik~ayr~la~~~hPd~~~~~~~f~~i~~Ay~~L~ 48 (315)
+++||.+||.+|+.++..+| ..|++.-.+|-.||+.+.
T Consensus 1 S~~ASfeEIq~Arn~ll~~y----~gd~~~~~~IEaAYD~IL 38 (194)
T PF11833_consen 1 SEDASFEEIQAARNRLLAQY----AGDEKSREAIEAAYDAIL 38 (194)
T ss_pred CCCCCHHHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHHH
Confidence 58999999999999999998 345577788999998553
No 118
>COG1076 DjlA DnaJ-domain-containing proteins 1 [Posttranslational modification, protein turnover, chaperones]
Probab=90.08 E-value=0.11 Score=44.53 Aligned_cols=48 Identities=33% Similarity=0.447 Sum_probs=38.5
Q ss_pred CeeeCCCCCCCHHHHHHHHHHHHHHhCCCCCCCH-HHHHHHHHHHhhcC
Q 021275 1 MRFSESRKNASQDDLKKAYRKAAIKNHPDKGGDP-EKFKELAQAYEVLS 48 (315)
Q Consensus 1 y~vLgv~~~a~~~~ik~ayr~la~~~hPd~~~~~-~~f~~i~~Ay~~L~ 48 (315)
|++|++...++..+|+++|+++...+|||+-... ..-+.+..|-+.+.
T Consensus 116 l~~l~~~~~~~~~~i~~~~r~l~~e~~~d~a~~~~~~~e~~~~~~~~~~ 164 (174)
T COG1076 116 LKVLGVEIKADQDAIKKAYRKLLSEQHPDKAAAKGLKLEFIEKLKEKLQ 164 (174)
T ss_pred HHHhcCchhhhHHHHHHHHHHHHHhcCHHHHHHhcCCHHHHHHHHHHHH
Confidence 5689999999999999999999999999985432 45666666666553
No 119
>cd03031 GRX_GRX_like Glutaredoxin (GRX) family, GRX-like domain containing protein subfamily; composed of uncharacterized eukaryotic proteins containing a GRX-like domain having only one conserved cysteine, aligning to the C-terminal cysteine of the CXXC motif of GRXs. This subfamily is predominantly composed of plant proteins. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins via a redox active CXXC motif using a similar dithiol mechanism employed by TRXs. GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. Proteins containing only the C-terminal cysteine are generally redox inactive.
Probab=88.11 E-value=0.44 Score=39.67 Aligned_cols=24 Identities=33% Similarity=0.688 Sum_probs=15.9
Q ss_pred EEccCCCCCCcccCCceecCCCcCCceEE
Q 021275 131 VICTKCKGKGSKSGASMKCSGCQGSGMKV 159 (315)
Q Consensus 131 ~~C~~C~G~G~~~~~~~~C~~C~G~G~~~ 159 (315)
..|..|.|.+.. +|..|+|+=.++
T Consensus 100 ~~C~~Cgg~rfv-----~C~~C~Gs~k~~ 123 (147)
T cd03031 100 GVCEGCGGARFV-----PCSECNGSCKVF 123 (147)
T ss_pred CCCCCCCCcCeE-----ECCCCCCcceEE
Confidence 457778777654 477777776543
No 120
>KOG2824 consensus Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=88.07 E-value=0.5 Score=43.00 Aligned_cols=51 Identities=31% Similarity=0.646 Sum_probs=32.4
Q ss_pred EEccCCCCCCcccCCceecCCCcCCceEEEEEecCCcceeEeeeeCCCCCCCceEeCCCCCCCccC
Q 021275 131 VICTKCKGKGSKSGASMKCSGCQGSGMKVSIRHLGPSMIQQMQHPCNECKGTGETINDKDRCPQCK 196 (315)
Q Consensus 131 ~~C~~C~G~G~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~~C~~C~G~G~~~~~~~~C~~C~ 196 (315)
-.|..|.|.++. +|..|+|+=.+...- ..-+ .-.+|..|+-.|-+ +|+.|.
T Consensus 230 ~~C~~CGg~rFl-----pC~~C~GS~kv~~~~-~~~~----~~~rC~~CNENGLv-----rCp~Cs 280 (281)
T KOG2824|consen 230 GVCESCGGARFL-----PCSNCHGSCKVHEEE-EDDG----GVLRCLECNENGLV-----RCPVCS 280 (281)
T ss_pred CcCCCcCCcceE-----ecCCCCCceeeeeec-cCCC----cEEECcccCCCCce-----eCCccC
Confidence 568888877764 588888887544310 0101 13578888888874 577775
No 121
>PF13446 RPT: A repeated domain in UCH-protein
Probab=86.68 E-value=0.87 Score=31.78 Aligned_cols=41 Identities=15% Similarity=0.268 Sum_probs=30.2
Q ss_pred CeeeCCCCCCCHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHhhcC
Q 021275 1 MRFSESRKNASQDDLKKAYRKAAIKNHPDKGGDPEKFKELAQAYEVLS 48 (315)
Q Consensus 1 y~vLgv~~~a~~~~ik~ayr~la~~~hPd~~~~~~~f~~i~~Ay~~L~ 48 (315)
|++|||+++.+++.|-.+|+.... ..| .....+.+|..++.
T Consensus 8 y~~Lgi~~~~~Dd~Ii~~f~~~~~-~~P------~~~~~~r~AL~~Ia 48 (62)
T PF13446_consen 8 YEILGIDEDTDDDFIISAFQSKVN-DDP------SQKDTLREALRVIA 48 (62)
T ss_pred HHHhCcCCCCCHHHHHHHHHHHHH-cCh------HhHHHHHHHHHHHH
Confidence 678999999999999999999776 222 34445556666554
No 122
>KOG0431 consensus Auxilin-like protein and related proteins containing DnaJ domain [General function prediction only]
Probab=85.02 E-value=0.85 Score=44.99 Aligned_cols=26 Identities=42% Similarity=0.553 Sum_probs=22.2
Q ss_pred CCCCHHHHHHHHHHHHHHhCCCCCCC
Q 021275 8 KNASQDDLKKAYRKAAIKNHPDKGGD 33 (315)
Q Consensus 8 ~~a~~~~ik~ayr~la~~~hPd~~~~ 33 (315)
.=.+.++||+||||..+..||||-+.
T Consensus 398 DLVtp~~VKKaYrKA~L~VHPDKlqq 423 (453)
T KOG0431|consen 398 DLVTPAQVKKAYRKAVLCVHPDKLQQ 423 (453)
T ss_pred hccCHHHHHHHHHhhhheeCcccccC
Confidence 33578999999999999999999653
No 123
>KOG0724 consensus Zuotin and related molecular chaperones (DnaJ superfamily), contains DNA-binding domains [Posttranslational modification, protein turnover, chaperones]
Probab=84.31 E-value=1 Score=42.53 Aligned_cols=51 Identities=41% Similarity=0.694 Sum_probs=41.9
Q ss_pred CCCHHHHHHHHHHHHHHhCCCCCC--------CHHHHHHHHHHHhhcCCCccccccccc
Q 021275 9 NASQDDLKKAYRKAAIKNHPDKGG--------DPEKFKELAQAYEVLSDPEKREIYDQY 59 (315)
Q Consensus 9 ~a~~~~ik~ayr~la~~~hPd~~~--------~~~~f~~i~~Ay~~L~d~~~R~~YD~~ 59 (315)
-++..+|..+|+..++..||++-. ..+.|++|.+||++|++..+|..+|..
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~i~ka~~i~~~~~~~~t~~~~ 61 (335)
T KOG0724|consen 3 LASEDELRLAYREMALKSHPEKKSFYEKLSLWTEEEFKKIEKALAILDDDEPRRTPDSW 61 (335)
T ss_pred cccHHHHHHHHHHHhhhcCcHHHHHHHHhhhhHHHHHHHHHHHHHHHhccccccchhhh
Confidence 367789999999999999999863 127899999999999997776666653
No 124
>smart00709 Zpr1 Duplicated domain in the epidermal growth factor- and elongation factor-1alpha-binding protein Zpr1. Also present in archaeal proteins.
Probab=81.64 E-value=5.8 Score=33.44 Aligned_cols=20 Identities=25% Similarity=0.316 Sum_probs=13.1
Q ss_pred EEEEEecccccCCcEEEEcC
Q 021275 206 VLEVIVEKGMQNGQKITFPG 225 (315)
Q Consensus 206 ~~~v~Ip~G~~~G~~i~l~g 225 (315)
.+.+.||||...|..-.+.|
T Consensus 81 El~~ei~pg~~~g~itTVEG 100 (160)
T smart00709 81 ELDLEIPPGPLGGFITTVEG 100 (160)
T ss_pred eeeEEecCCCCCcEEEehHH
Confidence 44577777777776666654
No 125
>TIGR00630 uvra excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=81.20 E-value=1.1 Score=48.24 Aligned_cols=33 Identities=33% Similarity=0.804 Sum_probs=19.6
Q ss_pred ecCCCcCCceEEEEEecCCcceeEeeeeCCCCCCCce
Q 021275 148 KCSGCQGSGMKVSIRHLGPSMIQQMQHPCNECKGTGE 184 (315)
Q Consensus 148 ~C~~C~G~G~~~~~~~~~~g~~~~~~~~C~~C~G~G~ 184 (315)
.|+.|.|.|++....++ +-.+..+|+.|+|+.+
T Consensus 738 ~C~~C~G~G~~~~~~~f----~~~~~~~C~~C~G~R~ 770 (924)
T TIGR00630 738 RCEACQGDGVIKIEMHF----LPDVYVPCEVCKGKRY 770 (924)
T ss_pred CCCCCccceEEEEEccC----CCCcccCCCCcCCcee
Confidence 48888888865532222 2224556777777654
No 126
>KOG2824 consensus Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=79.13 E-value=1.8 Score=39.43 Aligned_cols=40 Identities=25% Similarity=0.754 Sum_probs=29.3
Q ss_pred eecCCCcCCceEEEEEecCCcceeEeeeeCCCCCCCceEeC------CCCCCCccCCceEEE
Q 021275 147 MKCSGCQGSGMKVSIRHLGPSMIQQMQHPCNECKGTGETIN------DKDRCPQCKGEKVIQ 202 (315)
Q Consensus 147 ~~C~~C~G~G~~~~~~~~~~g~~~~~~~~C~~C~G~G~~~~------~~~~C~~C~G~g~~~ 202 (315)
..|..|+|.++ -+|..|+|+-++.. .-.+|..|+-+|.+.
T Consensus 230 ~~C~~CGg~rF----------------lpC~~C~GS~kv~~~~~~~~~~~rC~~CNENGLvr 275 (281)
T KOG2824|consen 230 GVCESCGGARF----------------LPCSNCHGSCKVHEEEEDDGGVLRCLECNENGLVR 275 (281)
T ss_pred CcCCCcCCcce----------------EecCCCCCceeeeeeccCCCcEEECcccCCCCcee
Confidence 46999999884 47999999877665 224788888777653
No 127
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=75.12 E-value=2.7 Score=45.32 Aligned_cols=33 Identities=36% Similarity=0.823 Sum_probs=20.5
Q ss_pred ecCCCcCCceEEEEEecCCcceeEeeeeCCCCCCCce
Q 021275 148 KCSGCQGSGMKVSIRHLGPSMIQQMQHPCNECKGTGE 184 (315)
Q Consensus 148 ~C~~C~G~G~~~~~~~~~~g~~~~~~~~C~~C~G~G~ 184 (315)
.|+.|.|.|.+....++-+ .+..+|+.|+|+..
T Consensus 740 ~C~~C~G~G~~~~~~~f~~----~~~~~C~~C~G~R~ 772 (943)
T PRK00349 740 RCEACQGDGVIKIEMHFLP----DVYVPCDVCKGKRY 772 (943)
T ss_pred CCCcccccceEEEEeccCC----CccccCccccCccc
Confidence 4888999887654333322 23456777777655
No 128
>cd03031 GRX_GRX_like Glutaredoxin (GRX) family, GRX-like domain containing protein subfamily; composed of uncharacterized eukaryotic proteins containing a GRX-like domain having only one conserved cysteine, aligning to the C-terminal cysteine of the CXXC motif of GRXs. This subfamily is predominantly composed of plant proteins. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins via a redox active CXXC motif using a similar dithiol mechanism employed by TRXs. GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. Proteins containing only the C-terminal cysteine are generally redox inactive.
Probab=73.88 E-value=3.2 Score=34.49 Aligned_cols=39 Identities=33% Similarity=0.982 Sum_probs=28.1
Q ss_pred eecCCCcCCceEEEEEecCCcceeEeeeeCCCCCCCceEeCCC-------CCCCccCCceEE
Q 021275 147 MKCSGCQGSGMKVSIRHLGPSMIQQMQHPCNECKGTGETINDK-------DRCPQCKGEKVI 201 (315)
Q Consensus 147 ~~C~~C~G~G~~~~~~~~~~g~~~~~~~~C~~C~G~G~~~~~~-------~~C~~C~G~g~~ 201 (315)
..|..|.|.++ .+|..|+|+-++..+. .+|+.|+-.|.+
T Consensus 100 ~~C~~Cgg~rf----------------v~C~~C~Gs~k~~~~~~~~~~~~~rC~~Cnengl~ 145 (147)
T cd03031 100 GVCEGCGGARF----------------VPCSECNGSCKVFAENATAAGGFLRCPECNENGLV 145 (147)
T ss_pred CCCCCCCCcCe----------------EECCCCCCcceEEeccCcccccEEECCCCCccccc
Confidence 35888888883 4788888887776544 478888876654
No 129
>TIGR00310 ZPR1_znf ZPR1 zinc finger domain.
Probab=73.53 E-value=13 Score=32.40 Aligned_cols=35 Identities=20% Similarity=0.395 Sum_probs=20.7
Q ss_pred ecCCCcCCceEEEEEec-CC--cceeEeeeeCCCCCCC
Q 021275 148 KCSGCQGSGMKVSIRHL-GP--SMIQQMQHPCNECKGT 182 (315)
Q Consensus 148 ~C~~C~G~G~~~~~~~~-~~--g~~~~~~~~C~~C~G~ 182 (315)
.|+.|++.|........ -| +-+-.+...|+.|+=+
T Consensus 2 ~Cp~C~~~~~~~~~~~~~IP~F~evii~sf~C~~CGyr 39 (192)
T TIGR00310 2 DCPSCGGECETVMKTVNDIPYFGEVLETSTICEHCGYR 39 (192)
T ss_pred cCCCCCCCCEEEEEEEcCCCCcceEEEEEEECCCCCCc
Confidence 47777777765433333 33 3333456788888765
No 130
>COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair]
Probab=71.06 E-value=4.4 Score=42.55 Aligned_cols=34 Identities=32% Similarity=0.723 Sum_probs=22.7
Q ss_pred eecCCCcCCceEEEEEecCCcceeEeeeeCCCCCCCce
Q 021275 147 MKCSGCQGSGMKVSIRHLGPSMIQQMQHPCNECKGTGE 184 (315)
Q Consensus 147 ~~C~~C~G~G~~~~~~~~~~g~~~~~~~~C~~C~G~G~ 184 (315)
-.|..|.|.|.+....++-|. +..+|+.|+|+-+
T Consensus 731 GRCe~C~GdG~ikIeM~FLpd----Vyv~CevC~GkRY 764 (935)
T COG0178 731 GRCEACQGDGVIKIEMHFLPD----VYVPCEVCHGKRY 764 (935)
T ss_pred cCCccccCCceEEEEeccCCC----ceeeCCCcCCccc
Confidence 458899999976655554442 4567777777754
No 131
>PRK14714 DNA polymerase II large subunit; Provisional
Probab=70.74 E-value=4.2 Score=44.51 Aligned_cols=67 Identities=18% Similarity=0.482 Sum_probs=40.3
Q ss_pred ceeeEeeceeeEEccCCCCCCcccCCceecCCCcCCceEEEEEecCCcceeEeeeeCCCCCCCceEeCC---CCCCCccC
Q 021275 120 GTSKKLSLSRNVICTKCKGKGSKSGASMKCSGCQGSGMKVSIRHLGPSMIQQMQHPCNECKGTGETIND---KDRCPQCK 196 (315)
Q Consensus 120 G~~~~~~~~~~~~C~~C~G~G~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~~C~~C~G~G~~~~~---~~~C~~C~ 196 (315)
+...++.+. ...||.|...... ..|+.|+..=. ....|+.|+.. +... ...|+.|.
T Consensus 658 ~G~ieVEV~-~rkCPkCG~~t~~----~fCP~CGs~te--------------~vy~CPsCGae--v~~des~a~~CP~CG 716 (1337)
T PRK14714 658 GGVIEVEVG-RRRCPSCGTETYE----NRCPDCGTHTE--------------PVYVCPDCGAE--VPPDESGRVECPRCD 716 (1337)
T ss_pred CCeEEEEEE-EEECCCCCCcccc----ccCcccCCcCC--------------CceeCccCCCc--cCCCccccccCCCCC
Confidence 333333443 5789999875432 37999998641 12379999874 1110 13899999
Q ss_pred CceEEEEeEEE
Q 021275 197 GEKVIQEKKVL 207 (315)
Q Consensus 197 G~g~~~~~~~~ 207 (315)
..-.....+.+
T Consensus 717 tplv~~~~~~i 727 (1337)
T PRK14714 717 VELTPYQRRTI 727 (1337)
T ss_pred CcccccceEEe
Confidence 77555444433
No 132
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=70.10 E-value=2.9 Score=47.84 Aligned_cols=33 Identities=30% Similarity=0.629 Sum_probs=21.3
Q ss_pred ecCCCcCCceEEEEEecCCcceeEeeeeCCCCCCCce
Q 021275 148 KCSGCQGSGMKVSIRHLGPSMIQQMQHPCNECKGTGE 184 (315)
Q Consensus 148 ~C~~C~G~G~~~~~~~~~~g~~~~~~~~C~~C~G~G~ 184 (315)
.|+.|+|.|++....++ +--+..+|+.|+|+.+
T Consensus 1609 rC~~C~G~G~i~i~m~f----l~dv~~~C~~C~G~R~ 1641 (1809)
T PRK00635 1609 QCSDCWGLGYQWIDRAF----YALEKRPCPTCSGFRI 1641 (1809)
T ss_pred CCCCCccCceEEEeccc----CCCcccCCCCCCCcCC
Confidence 48899999976543332 2334567888877755
No 133
>TIGR00630 uvra excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=65.89 E-value=2.8 Score=45.12 Aligned_cols=32 Identities=28% Similarity=0.563 Sum_probs=25.7
Q ss_pred eeCCCCCCCceEeC-------CCCCCCccCCceEEEEeE
Q 021275 174 HPCNECKGTGETIN-------DKDRCPQCKGEKVIQEKK 205 (315)
Q Consensus 174 ~~C~~C~G~G~~~~-------~~~~C~~C~G~g~~~~~~ 205 (315)
-.|+.|.|.|.+.. ....|+.|+|+.+..+.-
T Consensus 737 G~C~~C~G~G~~~~~~~f~~~~~~~C~~C~G~R~~~e~l 775 (924)
T TIGR00630 737 GRCEACQGDGVIKIEMHFLPDVYVPCEVCKGKRYNRETL 775 (924)
T ss_pred CCCCCCccceEEEEEccCCCCcccCCCCcCCceeChHHH
Confidence 46999999999862 246999999998877643
No 134
>PF07709 SRR: Seven Residue Repeat; InterPro: IPR011714 This repeat is found in some Plasmodium and Theileria proteins.
Probab=64.54 E-value=4.6 Score=19.55 Aligned_cols=13 Identities=54% Similarity=0.851 Sum_probs=10.5
Q ss_pred HHHHHHHHHhhcC
Q 021275 36 KFKELAQAYEVLS 48 (315)
Q Consensus 36 ~f~~i~~Ay~~L~ 48 (315)
.|.++..||+.|+
T Consensus 2 ~~~~V~~aY~~l~ 14 (14)
T PF07709_consen 2 KFEKVKNAYEQLS 14 (14)
T ss_pred cHHHHHHHHHhcC
Confidence 5788899998874
No 135
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=60.57 E-value=3.4 Score=44.55 Aligned_cols=28 Identities=25% Similarity=0.616 Sum_probs=22.6
Q ss_pred EEccCCCCCCcccC-------CceecCCCcCCceE
Q 021275 131 VICTKCKGKGSKSG-------ASMKCSGCQGSGMK 158 (315)
Q Consensus 131 ~~C~~C~G~G~~~~-------~~~~C~~C~G~G~~ 158 (315)
-.|+.|.|.|.... ...+|+.|+|+.+.
T Consensus 739 G~C~~C~G~G~~~~~~~f~~~~~~~C~~C~G~R~~ 773 (943)
T PRK00349 739 GRCEACQGDGVIKIEMHFLPDVYVPCDVCKGKRYN 773 (943)
T ss_pred CCCCcccccceEEEEeccCCCccccCccccCcccc
Confidence 46999999999753 23689999999874
No 136
>TIGR03655 anti_R_Lar restriction alleviation protein, Lar family. Restriction alleviation proteins provide a countermeasure to host cell restriction enzyme defense against foreign DNA such as phage or plasmids. This family consists of homologs to the phage antirestriction protein Lar, and most members belong to phage genomes or prophage regions of bacterial genomes.
Probab=60.27 E-value=15 Score=24.66 Aligned_cols=10 Identities=30% Similarity=0.866 Sum_probs=6.5
Q ss_pred ecCCCcCCce
Q 021275 148 KCSGCQGSGM 157 (315)
Q Consensus 148 ~C~~C~G~G~ 157 (315)
+||-|+|...
T Consensus 3 PCPfCGg~~~ 12 (53)
T TIGR03655 3 PCPFCGGADV 12 (53)
T ss_pred CCCCCCCcce
Confidence 4666766665
No 137
>KOG3442 consensus Uncharacterized conserved protein [Function unknown]
Probab=60.21 E-value=14 Score=29.63 Aligned_cols=47 Identities=19% Similarity=0.256 Sum_probs=36.5
Q ss_pred eeeCCCCCCCHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHhhcC
Q 021275 2 RFSESRKNASQDDLKKAYRKAAIKNHPDKGGDPEKFKELAQAYEVLS 48 (315)
Q Consensus 2 ~vLgv~~~a~~~~ik~ayr~la~~~hPd~~~~~~~f~~i~~Ay~~L~ 48 (315)
.||+|+...+.+||.+.|..|-....+.+.++=..-.++-.|-|-|.
T Consensus 63 qILnV~~~ln~eei~k~yehLFevNdkskGGSFYLQSKVfRAkErld 109 (132)
T KOG3442|consen 63 QILNVKEPLNREEIEKRYEHLFEVNDKSKGGSFYLQSKVFRAKERLD 109 (132)
T ss_pred hHhCCCCCCCHHHHHHHHHHHHhccCcccCcceeehHHHHHHHHHHH
Confidence 48999999999999999999999998887765434444555666553
No 138
>PRK12380 hydrogenase nickel incorporation protein HybF; Provisional
Probab=58.48 E-value=12 Score=29.62 Aligned_cols=39 Identities=15% Similarity=0.383 Sum_probs=20.3
Q ss_pred ccceeeEeec-eeeEEccCCCCCCcccCCceecCCCcCCc
Q 021275 118 YNGTSKKLSL-SRNVICTKCKGKGSKSGASMKCSGCQGSG 156 (315)
Q Consensus 118 ~~G~~~~~~~-~~~~~C~~C~G~G~~~~~~~~C~~C~G~G 156 (315)
+.|+...+.. +-...|..|+-.-........||.|++..
T Consensus 57 ~egA~L~I~~vp~~~~C~~Cg~~~~~~~~~~~CP~Cgs~~ 96 (113)
T PRK12380 57 AQGCDLHIVYKPAQAWCWDCSQVVEIHQHDAQCPHCHGER 96 (113)
T ss_pred cCCCEEEEEeeCcEEEcccCCCEEecCCcCccCcCCCCCC
Confidence 4455544433 34567888874443333333466666554
No 139
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=57.95 E-value=14 Score=38.82 Aligned_cols=50 Identities=22% Similarity=0.606 Sum_probs=34.1
Q ss_pred eEEccCCCCCCcccCCceecCCCcCCceEEEEEecCCcceeEeeeeCCCCCCCceEeCCCCCCCccCCc
Q 021275 130 NVICTKCKGKGSKSGASMKCSGCQGSGMKVSIRHLGPSMIQQMQHPCNECKGTGETINDKDRCPQCKGE 198 (315)
Q Consensus 130 ~~~C~~C~G~G~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~~C~~C~G~G~~~~~~~~C~~C~G~ 198 (315)
...|..|. ....|+.|...= ..++.. -+-.|..|+-...+ ...|+.|.+.
T Consensus 435 ~l~C~~Cg-------~v~~Cp~Cd~~l---t~H~~~------~~L~CH~Cg~~~~~---p~~Cp~Cgs~ 484 (730)
T COG1198 435 LLLCRDCG-------YIAECPNCDSPL---TLHKAT------GQLRCHYCGYQEPI---PQSCPECGSE 484 (730)
T ss_pred eeecccCC-------CcccCCCCCcce---EEecCC------CeeEeCCCCCCCCC---CCCCCCCCCC
Confidence 48899995 346799999761 112211 14579999877433 3799999987
No 140
>COG1326 Uncharacterized archaeal Zn-finger protein [General function prediction only]
Probab=57.83 E-value=1.1e+02 Score=26.69 Aligned_cols=19 Identities=37% Similarity=0.686 Sum_probs=13.5
Q ss_pred EEEeccc--ccCCcEEEEcCC
Q 021275 208 EVIVEKG--MQNGQKITFPGE 226 (315)
Q Consensus 208 ~v~Ip~G--~~~G~~i~l~g~ 226 (315)
.+.+||| ++-|+.|.+.++
T Consensus 66 ~vel~~gE~l~vGDei~vd~e 86 (201)
T COG1326 66 EVELDPGETLKVGDEIEVDGE 86 (201)
T ss_pred eEecCCCCeEecCCEEEEcCC
Confidence 4777777 777777777653
No 141
>PRK04023 DNA polymerase II large subunit; Validated
Probab=57.72 E-value=7.8 Score=41.55 Aligned_cols=72 Identities=17% Similarity=0.357 Sum_probs=43.5
Q ss_pred eeecccc-ceeeEeeceeeEEccCCCCCCcccCCceecCCCcCCceEEEEEecCCcceeEeeeeCCCCCCCceEeCCCCC
Q 021275 113 SLEDLYN-GTSKKLSLSRNVICTKCKGKGSKSGASMKCSGCQGSGMKVSIRHLGPSMIQQMQHPCNECKGTGETINDKDR 191 (315)
Q Consensus 113 ~l~e~~~-G~~~~~~~~~~~~C~~C~G~G~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~~C~~C~G~G~~~~~~~~ 191 (315)
++.+++. +...++.+. ...|+.|.-.+ ....|+.|+..-. ....|+.|.-... ...
T Consensus 609 ~i~~A~~~~g~~eVEVg-~RfCpsCG~~t----~~frCP~CG~~Te--------------~i~fCP~CG~~~~----~y~ 665 (1121)
T PRK04023 609 DINKAAKYKGTIEVEIG-RRKCPSCGKET----FYRRCPFCGTHTE--------------PVYRCPRCGIEVE----EDE 665 (1121)
T ss_pred cHHHHHhcCCceeeccc-CccCCCCCCcC----CcccCCCCCCCCC--------------cceeCccccCcCC----CCc
Confidence 3456665 444444433 36799997664 2357999998621 1347999954432 367
Q ss_pred CCccCCceEEEEeEEE
Q 021275 192 CPQCKGEKVIQEKKVL 207 (315)
Q Consensus 192 C~~C~G~g~~~~~~~~ 207 (315)
|+.|.-.-.....+.+
T Consensus 666 CPKCG~El~~~s~~~i 681 (1121)
T PRK04023 666 CEKCGREPTPYSKRKI 681 (1121)
T ss_pred CCCCCCCCCccceEEe
Confidence 9999976544444433
No 142
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=56.83 E-value=5 Score=46.04 Aligned_cols=29 Identities=24% Similarity=0.541 Sum_probs=22.9
Q ss_pred eEEccCCCCCCcccC-------CceecCCCcCCceE
Q 021275 130 NVICTKCKGKGSKSG-------ASMKCSGCQGSGMK 158 (315)
Q Consensus 130 ~~~C~~C~G~G~~~~-------~~~~C~~C~G~G~~ 158 (315)
.-.|+.|+|.|.... ...+|+.|+|+.+.
T Consensus 1607 ~GrC~~C~G~G~i~i~m~fl~dv~~~C~~C~G~R~~ 1642 (1809)
T PRK00635 1607 QGQCSDCWGLGYQWIDRAFYALEKRPCPTCSGFRIQ 1642 (1809)
T ss_pred CCCCCCCccCceEEEecccCCCcccCCCCCCCcCCC
Confidence 356999999998642 23789999999874
No 143
>TIGR00340 zpr1_rel ZPR1-related zinc finger protein. A model ZPR1_znf (TIGR00310) has been created to describe the domain shared by this protein and ZPR1.
Probab=56.71 E-value=28 Score=29.40 Aligned_cols=20 Identities=25% Similarity=0.369 Sum_probs=12.2
Q ss_pred EEEEEecccc-cCCcEEEEcC
Q 021275 206 VLEVIVEKGM-QNGQKITFPG 225 (315)
Q Consensus 206 ~~~v~Ip~G~-~~G~~i~l~g 225 (315)
.+.+.||||. ..|..-.+.|
T Consensus 78 El~lei~pg~~~~G~iTTVEG 98 (163)
T TIGR00340 78 ELGIKIEPGPASQGYISNIEG 98 (163)
T ss_pred ceeEEecCCCcCCceEEehHh
Confidence 3457777776 5666555644
No 144
>PF14687 DUF4460: Domain of unknown function (DUF4460)
Probab=56.63 E-value=21 Score=28.15 Aligned_cols=42 Identities=33% Similarity=0.401 Sum_probs=31.3
Q ss_pred CCCCHHHHHHHHHHHHHHhCCCCCCCH--------HHHHHHHHHHhhcCC
Q 021275 8 KNASQDDLKKAYRKAAIKNHPDKGGDP--------EKFKELAQAYEVLSD 49 (315)
Q Consensus 8 ~~a~~~~ik~ayr~la~~~hPd~~~~~--------~~f~~i~~Ay~~L~d 49 (315)
+..+..+++.|.|.+-++.|||..... +-++.++.-.+.|..
T Consensus 4 r~~~~~~l~~aLr~Fy~~VHPDlF~~~P~~k~~Ne~SLk~Ln~~Ld~l~~ 53 (112)
T PF14687_consen 4 RNLSSPDLRSALRPFYFAVHPDLFGQHPEEKQVNEESLKLLNSYLDSLKK 53 (112)
T ss_pred hhhhhHHHHHHHHHHHHHhCCcccccChHHHHhhHHHHHHHHHHHHHHhc
Confidence 456778999999999999999964321 456777766666654
No 145
>PF03589 Antiterm: Antitermination protein; InterPro: IPR003222 This entry consists of antitermination proteins found in bacteriophages, such as protein Q from phage lambda, and some bacterial homologues. Protein Q positively regulates expression of the phage late gene operon by binding to the bacterial host RNA polymerase (RNAP) and modifying it. The modified RNAP transcribes through termination sites that otherwise prevent expression of the regulated genes [].; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent
Probab=56.44 E-value=4.5 Score=31.03 Aligned_cols=12 Identities=33% Similarity=0.969 Sum_probs=7.7
Q ss_pred eeCCCCCCCceE
Q 021275 174 HPCNECKGTGET 185 (315)
Q Consensus 174 ~~C~~C~G~G~~ 185 (315)
..|..|.|.|..
T Consensus 33 k~c~rcgg~G~s 44 (95)
T PF03589_consen 33 KDCERCGGRGYS 44 (95)
T ss_pred hhhhhhcCCCCC
Confidence 456666666664
No 146
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=55.56 E-value=13 Score=37.18 Aligned_cols=53 Identities=25% Similarity=0.580 Sum_probs=33.1
Q ss_pred eEEccCCCCCCcccCCceecCCCcCCceEEEEEecCCcceeEeeeeCCCCCCCceEeCCCCCCCccCCceEE
Q 021275 130 NVICTKCKGKGSKSGASMKCSGCQGSGMKVSIRHLGPSMIQQMQHPCNECKGTGETINDKDRCPQCKGEKVI 201 (315)
Q Consensus 130 ~~~C~~C~G~G~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~~C~~C~G~G~~~~~~~~C~~C~G~g~~ 201 (315)
...|..|. ....|+.|.+.= .+. +. .-.-.|..|+-+-. ....|+.|.+....
T Consensus 213 ~~~C~~Cg-------~~~~C~~C~~~l-~~h--~~------~~~l~Ch~Cg~~~~---~~~~Cp~C~s~~l~ 265 (505)
T TIGR00595 213 NLLCRSCG-------YILCCPNCDVSL-TYH--KK------EGKLRCHYCGYQEP---IPKTCPQCGSEDLV 265 (505)
T ss_pred eeEhhhCc-------CccCCCCCCCce-EEe--cC------CCeEEcCCCcCcCC---CCCCCCCCCCCeeE
Confidence 47899995 346799998631 111 10 11457999975433 34799999886443
No 147
>TIGR00757 RNaseEG ribonuclease, Rne/Rng family. The C-terminal half of RNase E (excluded from the seed alignment for this model) lacks ribonuclease activity but participates in mRNA degradation by organizing the degradosome.
Probab=54.62 E-value=6 Score=38.65 Aligned_cols=28 Identities=25% Similarity=0.552 Sum_probs=19.3
Q ss_pred EEEecCCcceeEeeeeCCCCCCCceEeC
Q 021275 160 SIRHLGPSMIQQMQHPCNECKGTGETIN 187 (315)
Q Consensus 160 ~~~~~~~g~~~~~~~~C~~C~G~G~~~~ 187 (315)
.+.+.++.+...+..+|+.|+|+|++..
T Consensus 377 TRkr~~~sL~e~~~~~Cp~C~G~G~v~s 404 (414)
T TIGR00757 377 TRKRLRESLMEVLGTVCPHCSGTGIVKT 404 (414)
T ss_pred eccccCcChHHHhcCCCCCCcCeeEEcc
Confidence 3445555566667788888888888754
No 148
>PF07092 DUF1356: Protein of unknown function (DUF1356); InterPro: IPR009790 This family consists of several hypothetical mammalian proteins of around 250 residues in length. The function of this family is unknown.
Probab=53.86 E-value=6 Score=35.49 Aligned_cols=15 Identities=33% Similarity=0.862 Sum_probs=11.2
Q ss_pred eEEccCCCCCCcccC
Q 021275 130 NVICTKCKGKGSKSG 144 (315)
Q Consensus 130 ~~~C~~C~G~G~~~~ 144 (315)
.++||+|+|+|..+.
T Consensus 38 ~vtCPTCqGtGrIP~ 52 (238)
T PF07092_consen 38 SVTCPTCQGTGRIPR 52 (238)
T ss_pred CCcCCCCcCCccCCc
Confidence 467888888888764
No 149
>PF07739 TipAS: TipAS antibiotic-recognition domain; InterPro: IPR012925 TipAL is a bacterial transcriptional regulator of the MerR family. The tipA gene can be expressed as a long form, TipAL, and a short form, TipAS, which constitutes the C-terminal part of TipAL. TipAS forms the antibiotic-recognition domain []. This domain, which has an alpha-helical globin-like fold, is also found at the C terminus of other MerR family transcription factors, including Mta, a central regulator of multidrug resistance in Bacillus subtilis [], and SkgA from Caulobacter crescentus []. ; GO: 0003677 DNA binding, 0045892 negative regulation of transcription, DNA-dependent; PDB: 1NY9_A 3HH0_A 3QAO_A.
Probab=53.79 E-value=13 Score=28.86 Aligned_cols=52 Identities=27% Similarity=0.544 Sum_probs=35.3
Q ss_pred CCCCCCCH-HHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHhhcCCCccccccc-cccc
Q 021275 5 ESRKNASQ-DDLKKAYRKAAIKNHPDKGGDPEKFKELAQAYEVLSDPEKREIYD-QYGE 61 (315)
Q Consensus 5 gv~~~a~~-~~ik~ayr~la~~~hPd~~~~~~~f~~i~~Ay~~L~d~~~R~~YD-~~g~ 61 (315)
|++++... .++-+.++.+...+++ .+++.+..+.+.| +.||.-++.|| .++.
T Consensus 51 g~~p~s~evq~l~~~~~~~~~~~~~---~~~~~~~~l~~~y--~~~~~~~~~~~~~~~~ 104 (118)
T PF07739_consen 51 GVDPDSPEVQELAERWMELINQFTG---GDPELLRGLAQMY--VEDPRFAAMYDKKFGP 104 (118)
T ss_dssp T--TT-HHHHHHHHHHHHHHHHSS------HHHHHHHHHHT--TSTHHHHHHHG-GGST
T ss_pred CCCcCCHHHHHHHHHHHHHHHHHhC---CCHHHHHHHHHHH--HcCHHHHhhccccCCH
Confidence 55666544 4577888888887776 4568999999999 67888888888 5554
No 150
>COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair]
Probab=52.40 E-value=6.1 Score=41.60 Aligned_cols=29 Identities=24% Similarity=0.565 Sum_probs=23.2
Q ss_pred EEccCCCCCCcccC-------CceecCCCcCCceEE
Q 021275 131 VICTKCKGKGSKSG-------ASMKCSGCQGSGMKV 159 (315)
Q Consensus 131 ~~C~~C~G~G~~~~-------~~~~C~~C~G~G~~~ 159 (315)
-.|+.|+|.|.... ...+|+.|+|+-+.-
T Consensus 731 GRCe~C~GdG~ikIeM~FLpdVyv~CevC~GkRYn~ 766 (935)
T COG0178 731 GRCEACQGDGVIKIEMHFLPDVYVPCEVCHGKRYNR 766 (935)
T ss_pred cCCccccCCceEEEEeccCCCceeeCCCcCCccccc
Confidence 56999999999643 247899999998753
No 151
>TIGR00100 hypA hydrogenase nickel insertion protein HypA. In Hpylori, hypA mutant abolished hydrogenase activity and decrease in urease activity. Nickel supplementation in media restored urease activity and partial hydrogenase activity. HypA probably involved in inserting Ni in enzymes.
Probab=50.92 E-value=18 Score=28.68 Aligned_cols=39 Identities=18% Similarity=0.370 Sum_probs=18.9
Q ss_pred ccceeeEeec-eeeEEccCCCCCCcccCCceecCCCcCCc
Q 021275 118 YNGTSKKLSL-SRNVICTKCKGKGSKSGASMKCSGCQGSG 156 (315)
Q Consensus 118 ~~G~~~~~~~-~~~~~C~~C~G~G~~~~~~~~C~~C~G~G 156 (315)
+.|+...+.. +-...|..|+-.-........||.|++..
T Consensus 57 ~ega~L~I~~~p~~~~C~~Cg~~~~~~~~~~~CP~Cgs~~ 96 (115)
T TIGR00100 57 AEGAKLNIEDEPVECECEDCSEEVSPEIDLYRCPKCHGIM 96 (115)
T ss_pred cCCCEEEEEeeCcEEEcccCCCEEecCCcCccCcCCcCCC
Confidence 3444444432 23467888863332222234466666554
No 152
>PRK14559 putative protein serine/threonine phosphatase; Provisional
Probab=47.91 E-value=13 Score=38.40 Aligned_cols=49 Identities=29% Similarity=0.741 Sum_probs=30.9
Q ss_pred EEccCCCCCCcccCCceecCCCcCCceEEEEEecCCcceeEeeeeCCCCCCCceEeCCCCCCCccCCc
Q 021275 131 VICTKCKGKGSKSGASMKCSGCQGSGMKVSIRHLGPSMIQQMQHPCNECKGTGETINDKDRCPQCKGE 198 (315)
Q Consensus 131 ~~C~~C~G~G~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~~C~~C~G~G~~~~~~~~C~~C~G~ 198 (315)
..||.|+-. ......-|+.|+.+- ....|+.|+-. +....+.|+.|.-.
T Consensus 2 ~~Cp~Cg~~--n~~~akFC~~CG~~l---------------~~~~Cp~CG~~--~~~~~~fC~~CG~~ 50 (645)
T PRK14559 2 LICPQCQFE--NPNNNRFCQKCGTSL---------------THKPCPQCGTE--VPVDEAHCPNCGAE 50 (645)
T ss_pred CcCCCCCCc--CCCCCccccccCCCC---------------CCCcCCCCCCC--CCcccccccccCCc
Confidence 469999643 122235599995443 12579999766 22345789999865
No 153
>PF01155 HypA: Hydrogenase expression/synthesis hypA family; InterPro: IPR000688 Bacterial membrane-bound nickel-dependent hydrogenases requires a number of accessory proteins which are involved in their maturation. The exact role of these proteins is not yet clear, but some seem to be required for the incorporation of the nickel ions []. One of these proteins is generally known as hypA. It is a protein of about 12 to 14 kDa that contains, in its C-terminal region, four conserved cysteines that form a zinc-finger like motif. Escherichia coli has two proteins that belong to this family, hypA and hybF. A homologue, MJ0214, has also been found in a number of archaeal species, including the genome of Methanocaldococcus jannaschii (Methanococcus jannaschii).; GO: 0016151 nickel ion binding, 0006464 protein modification process; PDB: 2KDX_A 3A44_D 3A43_B.
Probab=46.98 E-value=15 Score=28.93 Aligned_cols=42 Identities=12% Similarity=0.372 Sum_probs=21.6
Q ss_pred ccccceeeEeece-eeEEccCCCCCCcccCCceecCCCcCCce
Q 021275 116 DLYNGTSKKLSLS-RNVICTKCKGKGSKSGASMKCSGCQGSGM 157 (315)
Q Consensus 116 e~~~G~~~~~~~~-~~~~C~~C~G~G~~~~~~~~C~~C~G~G~ 157 (315)
..+.|+...+... -...|..|+-..........||.|++...
T Consensus 55 T~~e~a~L~Ie~~p~~~~C~~Cg~~~~~~~~~~~CP~Cgs~~~ 97 (113)
T PF01155_consen 55 TILEGAELEIEEVPARARCRDCGHEFEPDEFDFSCPRCGSPDV 97 (113)
T ss_dssp STTTT-EEEEEEE--EEEETTTS-EEECHHCCHH-SSSSSS-E
T ss_pred CCccCCEEEEEecCCcEECCCCCCEEecCCCCCCCcCCcCCCc
Confidence 3455555554433 45778888766554444455777777664
No 154
>PRK12336 translation initiation factor IF-2 subunit beta; Provisional
Probab=46.27 E-value=1.5e+02 Score=25.94 Aligned_cols=12 Identities=42% Similarity=0.523 Sum_probs=7.6
Q ss_pred HHHHHHHhhcCC
Q 021275 38 KELAQAYEVLSD 49 (315)
Q Consensus 38 ~~i~~Ay~~L~d 49 (315)
..+..||+.|.+
T Consensus 5 ~lL~r~~~~l~~ 16 (201)
T PRK12336 5 SLLDRAMEVLPE 16 (201)
T ss_pred HHHHHHHHHCCc
Confidence 456677777754
No 155
>PF13719 zinc_ribbon_5: zinc-ribbon domain
Probab=45.83 E-value=12 Score=23.30 Aligned_cols=11 Identities=18% Similarity=0.730 Sum_probs=6.3
Q ss_pred EEccCCCCCCc
Q 021275 131 VICTKCKGKGS 141 (315)
Q Consensus 131 ~~C~~C~G~G~ 141 (315)
+.||.|+-.-.
T Consensus 3 i~CP~C~~~f~ 13 (37)
T PF13719_consen 3 ITCPNCQTRFR 13 (37)
T ss_pred EECCCCCceEE
Confidence 56777765433
No 156
>PRK00464 nrdR transcriptional regulator NrdR; Validated
Probab=44.28 E-value=26 Score=29.30 Aligned_cols=37 Identities=14% Similarity=0.249 Sum_probs=21.1
Q ss_pred ecCCCcCCc-eEEEEEecCCcceeEeeeeCCCCCCCce
Q 021275 148 KCSGCQGSG-MKVSIRHLGPSMIQQMQHPCNECKGTGE 184 (315)
Q Consensus 148 ~C~~C~G~G-~~~~~~~~~~g~~~~~~~~C~~C~G~G~ 184 (315)
.||.|+..- .++...-+.+|........|+.|+.+=.
T Consensus 2 ~cp~c~~~~~~~~~s~~~~~~~~~~~~~~c~~c~~~f~ 39 (154)
T PRK00464 2 RCPFCGHPDTRVIDSRPAEDGNAIRRRRECLACGKRFT 39 (154)
T ss_pred cCCCCCCCCCEeEeccccCCCCceeeeeeccccCCcce
Confidence 477777766 4445555555533222367777766643
No 157
>PF03833 PolC_DP2: DNA polymerase II large subunit DP2; InterPro: IPR016033 DP2 is the large subunit of a two-subunit novel archaebacterial replicative DNA polymerase first characterised for Pyrococcus furiosus. The structure of DP2 appears to be organised as a ~950 residue component separated from a ~300 residue component by a ~150 residue intein. The other subunit, DP1, has sequence similarity to the eukaryotic DNA polymerase delta small subunit. This entry represents the N-terminal ~950 residue component of DP2.; GO: 0003887 DNA-directed DNA polymerase activity; PDB: 3O59_X.
Probab=43.87 E-value=7.6 Score=40.86 Aligned_cols=56 Identities=23% Similarity=0.523 Sum_probs=0.0
Q ss_pred eEEccCCCCCCcccCCceecCCCcCCceEEEEEecCCcceeEeeeeCCCCCCCceEeCCCCCCCccCCceEEEEeEEE
Q 021275 130 NVICTKCKGKGSKSGASMKCSGCQGSGMKVSIRHLGPSMIQQMQHPCNECKGTGETINDKDRCPQCKGEKVIQEKKVL 207 (315)
Q Consensus 130 ~~~C~~C~G~G~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~~C~~C~G~G~~~~~~~~C~~C~G~g~~~~~~~~ 207 (315)
...|+.|.-... ...|+.|+..=. ..-.|+.|+-.- ....|+.|.-.......+.+
T Consensus 655 ~r~Cp~Cg~~t~----~~~Cp~CG~~T~--------------~~~~Cp~C~~~~----~~~~C~~C~~~~~~~~~~~i 710 (900)
T PF03833_consen 655 RRRCPKCGKETF----YNRCPECGSHTE--------------PVYVCPDCGIEV----EEDECPKCGRETTSYSKQKI 710 (900)
T ss_dssp ------------------------------------------------------------------------------
T ss_pred cccCcccCCcch----hhcCcccCCccc--------------cceecccccccc----CccccccccccCcccceeec
Confidence 356888864332 246888877542 234688886542 23689999877544444433
No 158
>PRK11712 ribonuclease G; Provisional
Probab=43.12 E-value=10 Score=37.80 Aligned_cols=29 Identities=17% Similarity=0.410 Sum_probs=19.8
Q ss_pred EEEEecCCcceeEeeeeCCCCCCCceEeC
Q 021275 159 VSIRHLGPSMIQQMQHPCNECKGTGETIN 187 (315)
Q Consensus 159 ~~~~~~~~g~~~~~~~~C~~C~G~G~~~~ 187 (315)
+.+.+.++.+...+..+||.|+|+|.+..
T Consensus 388 mTRkR~r~sl~~~l~~~Cp~C~G~G~v~s 416 (489)
T PRK11712 388 MTRKRTRESLEHVLCGECPTCHGRGTVKT 416 (489)
T ss_pred EEecccCCChHHHhcCCCCCCCCCCCcCC
Confidence 34445556666667788888888887654
No 159
>COG3128 PiuC Uncharacterized iron-regulated protein [Function unknown]
Probab=43.10 E-value=43 Score=29.04 Aligned_cols=46 Identities=28% Similarity=0.304 Sum_probs=36.8
Q ss_pred EeCCcEEEEEecCHHHHhCCCEEEEeCCCCCeEEEecCCCc-eeeCCc
Q 021275 252 RKGDDLFVEHTLSLTEALCGFQFVITHLDGRQLLIKSQPGE-VVKPGK 298 (315)
Q Consensus 252 r~g~dL~~~~~I~l~~al~G~~~~v~tldG~~~~i~~~~~~-v~~pg~ 298 (315)
|--.||.+++-.+=.|---|++..|.-+.|. ..|++|+|+ |+.|++
T Consensus 113 ~lrtdls~tlfl~DPedYdGGeLVv~dtYg~-h~VklPAGdLVlypSt 159 (229)
T COG3128 113 RLRTDLSCTLFLSDPEDYDGGELVVNDTYGN-HRVKLPAGDLVLYPST 159 (229)
T ss_pred eeEeeeeeeeecCCccccCCceEEEeccccc-eEEeccCCCEEEcccc
Confidence 5556788887777778889999999999994 789999998 556654
No 160
>PF10041 DUF2277: Uncharacterized conserved protein (DUF2277); InterPro: IPR018735 Members of this family of hypothetical bacterial proteins have no known function.
Probab=42.92 E-value=84 Score=23.00 Aligned_cols=46 Identities=20% Similarity=0.174 Sum_probs=32.1
Q ss_pred eeCCCCCCCHHHHHHHHHHHHHHhCCCCCCCH---HHHH----HHHHHHhhcC
Q 021275 3 FSESRKNASQDDLKKAYRKAAIKNHPDKGGDP---EKFK----ELAQAYEVLS 48 (315)
Q Consensus 3 vLgv~~~a~~~~ik~ayr~la~~~hPd~~~~~---~~f~----~i~~Ay~~L~ 48 (315)
+-|+.+.|+++||..|-.+..+|..=-..|+. +.|. +|..|-.-|.
T Consensus 8 L~~fePpaT~~EI~aAAlQyVRKvSG~~~Ps~an~eaF~~AV~eva~at~~LL 60 (78)
T PF10041_consen 8 LRNFEPPATDEEIRAAALQYVRKVSGFRKPSAANAEAFDRAVAEVAAATRRLL 60 (78)
T ss_pred hcCCCCCCCHHHHHHHHHHHHHHHccCCCcchhhHHHHHHHHHHHHHHHHHHH
Confidence 45788999999999999999998765555543 4443 4555544443
No 161
>PF02814 UreE_N: UreE urease accessory protein, N-terminal domain; InterPro: IPR004029 Urease and other nickel metalloenzymes are synthesised as precursors devoid of the metalloenzyme active site. These precursors then undergo a complex post-translational maturation process that requires a number of accessory proteins. Members of this group are nickel-binding proteins required for urease metallocentre assembly []. They are believed to function as metallochaperones to deliver nickel to urease apoprotein [, ]. It has been shown by yeast two-hybrid analysis that UreE forms a dimeric complex with UreG in Helicobacter pylori []. The UreDFG-apoenzyme complex has also been shown to exist [, ] and is believed to be, with the addition of UreE, the assembly system for active urease []. The complexes, rather than the individual proteins, presumably bind to UreB via UreE/H recognition sites. The structure of Klebsiella aerogenes UreE reveals a unique two-domain architecture.The N-terminal domain is structurally related to a heat shock protein, while the C-terminal domain shows homology to the Atx1 copper metallochaperone [, ]. Significantly, the metal-binding sites in UreE and Atx1 are distinct in location and types of residues despite the relationship between these proteins and the mechanism for UreE activation of urease is proposed to be different from the thiol ligand exchange mechanism used by the copper metallochaperones. The N-terminal domain is termed the peptide-binding domain. Deletion of this domain does not eliminate enzymatic activity, and the truncated protein can still activate urease [].; GO: 0016151 nickel ion binding, 0006461 protein complex assembly, 0019627 urea metabolic process; PDB: 3NXZ_B 3TJA_B 3LA0_B 3TJ9_B 3NY0_A 3L9Z_A 3TJ8_A 1EAR_A 1EB0_A 1GMU_B ....
Probab=42.68 E-value=47 Score=23.21 Aligned_cols=47 Identities=26% Similarity=0.321 Sum_probs=29.2
Q ss_pred EEEEecCHHHHhCCCEEEEeCCCCCeEEEecCCCceeeCCcEEEEeCC
Q 021275 258 FVEHTLSLTEALCGFQFVITHLDGRQLLIKSQPGEVVKPGKYNWMDVS 305 (315)
Q Consensus 258 ~~~~~I~l~~al~G~~~~v~tldG~~~~i~~~~~~v~~pg~~~~i~~~ 305 (315)
.-.+.++..++. =....+.|-+|+.+-|.+|.+..+++|.+....+.
T Consensus 16 ~~~v~L~~~~r~-k~r~r~~t~~G~ei~i~L~r~~~L~~GDvL~~d~g 62 (65)
T PF02814_consen 16 IDTVTLDWDERQ-KRRLRLTTDDGREIGIDLPRGTVLRDGDVLYLDDG 62 (65)
T ss_dssp EEEEEE-GGGCT-SSEEEEE-TTS-EEEEE-SSTTT--TTEEEEECTS
T ss_pred ceEEEECHHHhc-ceEEEEECCCCCEEEEECCCCcccCCCCEEEeCCC
Confidence 334555555533 33456788999999999999999999999877653
No 162
>COG5552 Uncharacterized conserved protein [Function unknown]
Probab=41.72 E-value=87 Score=22.81 Aligned_cols=33 Identities=9% Similarity=-0.042 Sum_probs=26.3
Q ss_pred eeeCCCCCCCHHHHHHHHHHHHHHhCCCCCCCH
Q 021275 2 RFSESRKNASQDDLKKAYRKAAIKNHPDKGGDP 34 (315)
Q Consensus 2 ~vLgv~~~a~~~~ik~ayr~la~~~hPd~~~~~ 34 (315)
++.|+++.|+..||+.|-++..++..=-..|+.
T Consensus 7 ~LfnfdPPAT~~EvrdAAlQfVRKlSGtT~PS~ 39 (88)
T COG5552 7 ELFNFDPPATPVEVRDAALQFVRKLSGTTHPSA 39 (88)
T ss_pred HHhCCCCCCCcHHHHHHHHHHHHHhcCCCCcch
Confidence 367899999999999999888888765555543
No 163
>PF07092 DUF1356: Protein of unknown function (DUF1356); InterPro: IPR009790 This family consists of several hypothetical mammalian proteins of around 250 residues in length. The function of this family is unknown.
Probab=41.60 E-value=17 Score=32.64 Aligned_cols=10 Identities=50% Similarity=1.268 Sum_probs=5.6
Q ss_pred ecCCCcCCce
Q 021275 148 KCSGCQGSGM 157 (315)
Q Consensus 148 ~C~~C~G~G~ 157 (315)
+||+|+|+|+
T Consensus 40 tCPTCqGtGr 49 (238)
T PF07092_consen 40 TCPTCQGTGR 49 (238)
T ss_pred cCCCCcCCcc
Confidence 4555555554
No 164
>COG1724 Predicted RNA binding protein (dsRBD-like fold), HicA family [General function prediction only]
Probab=41.25 E-value=10 Score=26.87 Aligned_cols=32 Identities=28% Similarity=0.485 Sum_probs=25.3
Q ss_pred CCEEEEeCCCCCeEEEecCCCceeeCCcEEEE
Q 021275 271 GFQFVITHLDGRQLLIKSQPGEVVKPGKYNWM 302 (315)
Q Consensus 271 G~~~~v~tldG~~~~i~~~~~~v~~pg~~~~i 302 (315)
|--+...++||+.++|...|++.+.||..+.|
T Consensus 28 GSH~q~kHp~~~~vtVP~Hp~~dl~~Gtl~~I 59 (66)
T COG1724 28 GSHRQYKHPDGGRVTVPFHPGEDLPPGTLRSI 59 (66)
T ss_pred cceeEEEcCCCCEEEecCCCccccCcHHHHHH
Confidence 55567789998888888889999999876544
No 165
>PF08273 Prim_Zn_Ribbon: Zinc-binding domain of primase-helicase; InterPro: IPR013237 This entry is represented by bacteriophage T7 Gp4. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This entry represents a zinc binding domain found in the N-terminal region of the bacteriophage T7 Gp4 and P4 alpha protein. P4 is a multifunctional protein with origin recognition, helicase and primase activities [, , ].; GO: 0003896 DNA primase activity, 0004386 helicase activity, 0008270 zinc ion binding; PDB: 1NUI_B.
Probab=40.50 E-value=24 Score=22.52 Aligned_cols=12 Identities=33% Similarity=0.692 Sum_probs=4.9
Q ss_pred eEEccCCCCCCc
Q 021275 130 NVICTKCKGKGS 141 (315)
Q Consensus 130 ~~~C~~C~G~G~ 141 (315)
...||.|.|+..
T Consensus 3 h~pCP~CGG~Dr 14 (40)
T PF08273_consen 3 HGPCPICGGKDR 14 (40)
T ss_dssp EE--TTTT-TTT
T ss_pred CCCCCCCcCccc
Confidence 345666666554
No 166
>PF12434 Malate_DH: Malate dehydrogenase enzyme
Probab=40.08 E-value=40 Score=19.50 Aligned_cols=17 Identities=29% Similarity=0.550 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHhCC
Q 021275 12 QDDLKKAYRKAAIKNHP 28 (315)
Q Consensus 12 ~~~ik~ayr~la~~~hP 28 (315)
.++.+.+.|+.|+.||-
T Consensus 10 ~~~~r~~lR~AALeYHe 26 (28)
T PF12434_consen 10 KEDKRAQLRQAALEYHE 26 (28)
T ss_pred hHHHHHHHHHHHHHhcc
Confidence 46789999999999993
No 167
>PF14353 CpXC: CpXC protein
Probab=39.61 E-value=13 Score=29.73 Aligned_cols=14 Identities=14% Similarity=0.373 Sum_probs=9.7
Q ss_pred eeeeCCCCCCCceE
Q 021275 172 MQHPCNECKGTGET 185 (315)
Q Consensus 172 ~~~~C~~C~G~G~~ 185 (315)
...+||.|+....+
T Consensus 37 ~~~~CP~Cg~~~~~ 50 (128)
T PF14353_consen 37 FSFTCPSCGHKFRL 50 (128)
T ss_pred CEEECCCCCCceec
Confidence 35678888777664
No 168
>PRK13263 ureE urease accessory protein UreE; Provisional
Probab=39.38 E-value=2.3e+02 Score=24.93 Aligned_cols=48 Identities=19% Similarity=0.221 Sum_probs=37.6
Q ss_pred EEEEEecCHHHHhCCCEEEEeCCCCCeEEEecCCCceeeCCcEEEEeCC
Q 021275 257 LFVEHTLSLTEALCGFQFVITHLDGRQLLIKSQPGEVVKPGKYNWMDVS 305 (315)
Q Consensus 257 L~~~~~I~l~~al~G~~~~v~tldG~~~~i~~~~~~v~~pg~~~~i~~~ 305 (315)
..-++.|++.+ ..-....+.|-+|+.+-|.+|.+.++++|.+....+.
T Consensus 21 ~~~~V~L~~dd-r~KrR~R~~td~G~evgl~LpRg~~L~dGDvL~~ddg 68 (206)
T PRK13263 21 RAPTLTLAFDA-RCKSRLAATLDTGREVAVVLPRGTVLRDGDVLVAEDG 68 (206)
T ss_pred eeeEEEECHHH-hhcceEEEECCCCCEEEEECCCCCccCCCCEEEeCCC
Confidence 34567777765 4445667889999999999999999999999987655
No 169
>PRK03564 formate dehydrogenase accessory protein FdhE; Provisional
Probab=38.31 E-value=33 Score=32.12 Aligned_cols=10 Identities=20% Similarity=0.637 Sum_probs=6.6
Q ss_pred eEEccCCCCC
Q 021275 130 NVICTKCKGK 139 (315)
Q Consensus 130 ~~~C~~C~G~ 139 (315)
...||.|.+.
T Consensus 187 ~~~CPvCGs~ 196 (309)
T PRK03564 187 RQFCPVCGSM 196 (309)
T ss_pred CCCCCCCCCc
Confidence 4567777665
No 170
>KOG0527 consensus HMG-box transcription factor [Transcription]
Probab=38.30 E-value=24 Score=33.42 Aligned_cols=41 Identities=29% Similarity=0.455 Sum_probs=33.0
Q ss_pred HHHHHHHHHhCCCCCCCHHHHHHHHHHHhhcCCCcccccccc
Q 021275 17 KAYRKAAIKNHPDKGGDPEKFKELAQAYEVLSDPEKREIYDQ 58 (315)
Q Consensus 17 ~ayr~la~~~hPd~~~~~~~f~~i~~Ay~~L~d~~~R~~YD~ 58 (315)
+..||...+-.||-+. .|.-|+|-+-|..|++.+||-.+|.
T Consensus 75 q~~RRkma~qnP~mHN-SEISK~LG~~WK~Lse~EKrPFi~E 115 (331)
T KOG0527|consen 75 QGQRRKLAKQNPKMHN-SEISKRLGAEWKLLSEEEKRPFVDE 115 (331)
T ss_pred HHHHHHHHHhCcchhh-HHHHHHHHHHHhhcCHhhhccHHHH
Confidence 4556655666788763 4999999999999999999998884
No 171
>PF03367 zf-ZPR1: ZPR1 zinc-finger domain; InterPro: IPR004457 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents ZPR1-type zinc finger domains. An orthologous protein found once in each of the completed archaeal genomes corresponds to a zinc finger-containing domain repeated as the N-terminal and C-terminal halves of the mouse protein ZPR1. ZPR1 is an experimentally proven zinc-binding protein that binds the tyrosine kinase domain of the epidermal growth factor receptor (EGFR); binding is inhibited by EGF stimulation and tyrosine phosphorylation, and activation by EGF is followed by some redistribution of ZPR1 to the nucleus. By analogy, other proteins with the ZPR1 zinc finger domain may be regulatory proteins that sense protein phosphorylation state and/or participate in signal transduction (see also IPR004470 from INTERPRO). Deficiencies in ZPR1 may contribute to neurodegenerative disorders. ZPR1 appears to be down-regulated in patients with spinal muscular atrophy (SMA), a disease characterised by degeneration of the alpha-motor neurons in the spinal cord that can arise from mutations affecting the expression of Survival Motor Neurons (SMN) []. ZPR1 interacts with complexes formed by SMN [], and may act as a modifier that effects the severity of SMA. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 2QKD_A.
Probab=37.99 E-value=50 Score=27.81 Aligned_cols=34 Identities=21% Similarity=0.448 Sum_probs=17.3
Q ss_pred eecCCCcCCceEEEEEecCC--cceeEeeeeCCCCC
Q 021275 147 MKCSGCQGSGMKVSIRHLGP--SMIQQMQHPCNECK 180 (315)
Q Consensus 147 ~~C~~C~G~G~~~~~~~~~~--g~~~~~~~~C~~C~ 180 (315)
..|+.|+..|........-| +-+-.+...|+.|+
T Consensus 2 s~Cp~C~~~~~~~~~~~~IP~F~evii~sf~C~~CG 37 (161)
T PF03367_consen 2 SLCPNCGENGTTRILLTDIPYFKEVIIMSFECEHCG 37 (161)
T ss_dssp EE-TTTSSCCEEEEEEEEETTTEEEEEEEEE-TTT-
T ss_pred CcCCCCCCCcEEEEEEEcCCCCceEEEEEeECCCCC
Confidence 35888888886533222222 33334566788885
No 172
>CHL00062 psbB photosystem II 47 kDa protein
Probab=37.64 E-value=83 Score=31.05 Aligned_cols=27 Identities=37% Similarity=0.722 Sum_probs=21.8
Q ss_pred HHHHHhhcCCCcccccccccccccccccc
Q 021275 40 LAQAYEVLSDPEKREIYDQYGEDALKEGM 68 (315)
Q Consensus 40 i~~Ay~~L~d~~~R~~YD~~g~~~~~~g~ 68 (315)
++|||+.+ |+|-+.||--|....+.|.
T Consensus 298 ~~~a~~~i--p~kl~fydyign~pakggl 324 (504)
T CHL00062 298 LSEAWSKI--PEKLAFYDYIGNNPAKGGL 324 (504)
T ss_pred HHHHHHhc--chhhhhhhhcCCCcccCcc
Confidence 67899977 8999999999887766543
No 173
>PF13453 zf-TFIIB: Transcription factor zinc-finger
Probab=37.14 E-value=39 Score=21.28 Aligned_cols=9 Identities=33% Similarity=0.907 Sum_probs=5.3
Q ss_pred eeeCCCCCC
Q 021275 173 QHPCNECKG 181 (315)
Q Consensus 173 ~~~C~~C~G 181 (315)
-..|+.|+|
T Consensus 19 id~C~~C~G 27 (41)
T PF13453_consen 19 IDVCPSCGG 27 (41)
T ss_pred EEECCCCCe
Confidence 355666665
No 174
>PRK00564 hypA hydrogenase nickel incorporation protein; Provisional
Probab=36.81 E-value=51 Score=26.12 Aligned_cols=39 Identities=10% Similarity=0.252 Sum_probs=19.9
Q ss_pred ccceeeEee-ceeeEEccCCCCCCcccCCc-eecCCCcCCc
Q 021275 118 YNGTSKKLS-LSRNVICTKCKGKGSKSGAS-MKCSGCQGSG 156 (315)
Q Consensus 118 ~~G~~~~~~-~~~~~~C~~C~G~G~~~~~~-~~C~~C~G~G 156 (315)
+.|+...+. .+....|..|+-.-...... ..||.|++..
T Consensus 58 ~ega~L~Ie~vp~~~~C~~Cg~~~~~~~~~~~~CP~Cgs~~ 98 (117)
T PRK00564 58 CKDAILDIVDEKVELECKDCSHVFKPNALDYGVCEKCHSKN 98 (117)
T ss_pred cCCCEEEEEecCCEEEhhhCCCccccCCccCCcCcCCCCCc
Confidence 445554443 33457788887443332222 2366666555
No 175
>PRK05580 primosome assembly protein PriA; Validated
Probab=35.13 E-value=49 Score=34.51 Aligned_cols=53 Identities=19% Similarity=0.634 Sum_probs=33.2
Q ss_pred eEEccCCCCCCcccCCceecCCCcCCceEEEEEecCCcceeEeeeeCCCCCCCceEeCCCCCCCccCCceEE
Q 021275 130 NVICTKCKGKGSKSGASMKCSGCQGSGMKVSIRHLGPSMIQQMQHPCNECKGTGETINDKDRCPQCKGEKVI 201 (315)
Q Consensus 130 ~~~C~~C~G~G~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~~C~~C~G~G~~~~~~~~C~~C~G~g~~ 201 (315)
...|..|. ....|+.|.+ ..... .. .-.-.|..|+-+-. ....|+.|.+..+.
T Consensus 381 ~~~C~~Cg-------~~~~C~~C~~-~l~~h--~~------~~~l~Ch~Cg~~~~---~~~~Cp~Cg~~~l~ 433 (679)
T PRK05580 381 FLLCRDCG-------WVAECPHCDA-SLTLH--RF------QRRLRCHHCGYQEP---IPKACPECGSTDLV 433 (679)
T ss_pred ceEhhhCc-------CccCCCCCCC-ceeEE--CC------CCeEECCCCcCCCC---CCCCCCCCcCCeeE
Confidence 47899995 3456999998 32211 00 11346999975533 23789999887433
No 176
>PF08792 A2L_zn_ribbon: A2L zinc ribbon domain; InterPro: IPR014900 This zinc ribbon protein is found associated with some viral A2L transcription factors [].
Probab=34.39 E-value=31 Score=20.93 Aligned_cols=10 Identities=60% Similarity=1.428 Sum_probs=5.6
Q ss_pred ecCCCcCCce
Q 021275 148 KCSGCQGSGM 157 (315)
Q Consensus 148 ~C~~C~G~G~ 157 (315)
.|+.|++.|.
T Consensus 5 ~C~~C~~~~i 14 (33)
T PF08792_consen 5 KCSKCGGNGI 14 (33)
T ss_pred EcCCCCCCeE
Confidence 4556666553
No 177
>PRK04023 DNA polymerase II large subunit; Validated
Probab=33.96 E-value=25 Score=37.95 Aligned_cols=47 Identities=15% Similarity=0.328 Sum_probs=31.7
Q ss_pred ccccceeeEeeceeeEEccCCCCCCcccCCceecCCCcCCceEEEEEecCCcceeEeeeeCCCCCCCc
Q 021275 116 DLYNGTSKKLSLSRNVICTKCKGKGSKSGASMKCSGCQGSGMKVSIRHLGPSMIQQMQHPCNECKGTG 183 (315)
Q Consensus 116 e~~~G~~~~~~~~~~~~C~~C~G~G~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~~C~~C~G~G 183 (315)
..|..|+... ....|+.|... ......|+.|.-.. ....|+.|+-.-
T Consensus 627 RfCpsCG~~t---~~frCP~CG~~---Te~i~fCP~CG~~~---------------~~y~CPKCG~El 673 (1121)
T PRK04023 627 RKCPSCGKET---FYRRCPFCGTH---TEPVYRCPRCGIEV---------------EEDECEKCGREP 673 (1121)
T ss_pred ccCCCCCCcC---CcccCCCCCCC---CCcceeCccccCcC---------------CCCcCCCCCCCC
Confidence 4577777663 44689999866 33456799995444 246799998663
No 178
>PF07754 DUF1610: Domain of unknown function (DUF1610); InterPro: IPR011668 This domain is found in archaeal species. It is likely to bind zinc via its four well-conserved cysteine residues.
Probab=33.33 E-value=34 Score=19.28 Aligned_cols=7 Identities=43% Similarity=1.440 Sum_probs=3.7
Q ss_pred eeeCCCC
Q 021275 173 QHPCNEC 179 (315)
Q Consensus 173 ~~~C~~C 179 (315)
..+|+.|
T Consensus 16 ~f~CPnC 22 (24)
T PF07754_consen 16 PFPCPNC 22 (24)
T ss_pred eEeCCCC
Confidence 4455555
No 179
>PRK12380 hydrogenase nickel incorporation protein HybF; Provisional
Probab=33.16 E-value=52 Score=25.93 Aligned_cols=7 Identities=29% Similarity=0.752 Sum_probs=3.8
Q ss_pred eecCCCc
Q 021275 147 MKCSGCQ 153 (315)
Q Consensus 147 ~~C~~C~ 153 (315)
..|..|+
T Consensus 71 ~~C~~Cg 77 (113)
T PRK12380 71 AWCWDCS 77 (113)
T ss_pred EEcccCC
Confidence 3466665
No 180
>PF08271 TF_Zn_Ribbon: TFIIB zinc-binding; InterPro: IPR013137 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a zinc finger motif found in transcription factor IIB (TFIIB). In eukaryotes the initiation of transcription of protein encoding genes by the polymerase II complexe (Pol II) is modulated by general and specific transcription factors. The general transcription factors operate through common promoters elements (such as the TATA box). At least seven different proteins associate to form the general transcription factors: TFIIA, -IIB, -IID, -IIE, -IIF, -IIG, and -IIH []. TFIIB and TFIID are responsible for promoter recognition and interaction with pol II; together with Pol II, they form a minimal initiation complex capable of transcription under certain conditions. The TATA box of a Pol II promoter is bound in the initiation complex by the TBP subunit of TFIID, which bends the DNA around the C-terminal domain of TFIIB whereas the N-terminal zinc finger of TFIIB interacts with Pol II [, ]. The TFIIB zinc finger adopts a zinc ribbon fold characterised by two beta-hairpins forming two structurally similar zinc-binding sub-sites []. The zinc finger contacts the rbp1 subunit of Pol II through its dock domain, a conserved region of about 70 amino acids located close to the polymerase active site []. In the Pol II complex this surface is located near the RNA exit groove. Interestingly this sequence is best conserved in the three polymerases that utilise a TFIIB-like general transcription factor (Pol II, Pol III, and archaeal RNA polymerase) but not in Pol I []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0006355 regulation of transcription, DNA-dependent; PDB: 1VD4_A 1PFT_A 3K1F_M 3K7A_M 1RO4_A 1RLY_A 1DL6_A.
Probab=33.09 E-value=38 Score=21.56 Aligned_cols=9 Identities=33% Similarity=0.951 Sum_probs=5.0
Q ss_pred ecCCCcCCc
Q 021275 148 KCSGCQGSG 156 (315)
Q Consensus 148 ~C~~C~G~G 156 (315)
.||.|+.+-
T Consensus 2 ~Cp~Cg~~~ 10 (43)
T PF08271_consen 2 KCPNCGSKE 10 (43)
T ss_dssp SBTTTSSSE
T ss_pred CCcCCcCCc
Confidence 466666544
No 181
>PF02736 Myosin_N: Myosin N-terminal SH3-like domain; InterPro: IPR004009 This domain has an SH3-like fold. It is found at the N terminus of many but not all myosins. The function of this domain is unknown.; GO: 0003774 motor activity, 0005524 ATP binding, 0016459 myosin complex; PDB: 2EC6_A 2W4H_M 1O1E_P 1O1D_D 1O18_A 1O1C_P 1O1B_D 1O1F_A 2W4A_M 2W4G_M ....
Probab=32.71 E-value=67 Score=20.38 Aligned_cols=35 Identities=17% Similarity=0.290 Sum_probs=23.9
Q ss_pred cEEeCCcEEEEEecCHHHHhCCCEEEEeCCCCCeEEEe
Q 021275 250 FKRKGDDLFVEHTLSLTEALCGFQFVITHLDGRQLLIK 287 (315)
Q Consensus 250 f~r~g~dL~~~~~I~l~~al~G~~~~v~tldG~~~~i~ 287 (315)
|-.+..+-+..-.|. ...|..+.|.+.+|+++.|+
T Consensus 5 WvpD~~egfv~g~I~---~~~g~~vtV~~~~G~~~tv~ 39 (42)
T PF02736_consen 5 WVPDPKEGFVKGEII---EEEGDKVTVKTEDGKEVTVK 39 (42)
T ss_dssp EEEESSSSEEEEEEE---EEESSEEEEEETTTEEEEEE
T ss_pred EEeCCcccEEEEEEE---EEcCCEEEEEECCCCEEEeC
Confidence 334455556665555 56789999999999866554
No 182
>TIGR00100 hypA hydrogenase nickel insertion protein HypA. In Hpylori, hypA mutant abolished hydrogenase activity and decrease in urease activity. Nickel supplementation in media restored urease activity and partial hydrogenase activity. HypA probably involved in inserting Ni in enzymes.
Probab=32.39 E-value=57 Score=25.73 Aligned_cols=9 Identities=33% Similarity=0.944 Sum_probs=4.7
Q ss_pred eCCCCCCCc
Q 021275 175 PCNECKGTG 183 (315)
Q Consensus 175 ~C~~C~G~G 183 (315)
.||.|++..
T Consensus 88 ~CP~Cgs~~ 96 (115)
T TIGR00100 88 RCPKCHGIM 96 (115)
T ss_pred cCcCCcCCC
Confidence 455555544
No 183
>PF13717 zinc_ribbon_4: zinc-ribbon domain
Probab=30.37 E-value=30 Score=21.30 Aligned_cols=9 Identities=33% Similarity=1.169 Sum_probs=5.4
Q ss_pred EEccCCCCC
Q 021275 131 VICTKCKGK 139 (315)
Q Consensus 131 ~~C~~C~G~ 139 (315)
+.|+.|+-.
T Consensus 3 i~Cp~C~~~ 11 (36)
T PF13717_consen 3 ITCPNCQAK 11 (36)
T ss_pred EECCCCCCE
Confidence 566666644
No 184
>cd01388 SOX-TCF_HMG-box SOX-TCF_HMG-box, class I member of the HMG-box superfamily of DNA-binding proteins. These proteins contain a single HMG box, and bind the minor groove of DNA in a highly sequence-specific manner. Members include SRY and its homologs in insects and vertebrates, and transcription factor-like proteins, TCF-1, -3, -4, and LEF-1. They appear to bind the minor groove of the A/T C A A A G/C-motif.
Probab=29.82 E-value=31 Score=24.47 Aligned_cols=41 Identities=27% Similarity=0.414 Sum_probs=30.6
Q ss_pred HHHHHHHHHhCCCCCCCHHHHHHHHHHHhhcCCCcccccccc
Q 021275 17 KAYRKAAIKNHPDKGGDPEKFKELAQAYEVLSDPEKREIYDQ 58 (315)
Q Consensus 17 ~ayr~la~~~hPd~~~~~~~f~~i~~Ay~~L~d~~~R~~YD~ 58 (315)
+.+|...++-||+.. ..+..+.|.+.|..|++.+|...+|.
T Consensus 14 ~~~r~~~~~~~p~~~-~~eisk~l~~~Wk~ls~~eK~~y~~~ 54 (72)
T cd01388 14 KRHRRKVLQEYPLKE-NRAISKILGDRWKALSNEEKQPYYEE 54 (72)
T ss_pred HHHHHHHHHHCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 445666667899863 34888899999999998887665554
No 185
>PRK03681 hypA hydrogenase nickel incorporation protein; Validated
Probab=29.59 E-value=68 Score=25.27 Aligned_cols=20 Identities=20% Similarity=0.468 Sum_probs=10.9
Q ss_pred ccceeeEeece-eeEEccCCC
Q 021275 118 YNGTSKKLSLS-RNVICTKCK 137 (315)
Q Consensus 118 ~~G~~~~~~~~-~~~~C~~C~ 137 (315)
+.|+...+... ....|.+|+
T Consensus 57 ~egA~L~i~~~p~~~~C~~Cg 77 (114)
T PRK03681 57 AEGCKLHLEEQEAECWCETCQ 77 (114)
T ss_pred cCCCEEEEEeeCcEEEcccCC
Confidence 44554444332 346687776
No 186
>PF01155 HypA: Hydrogenase expression/synthesis hypA family; InterPro: IPR000688 Bacterial membrane-bound nickel-dependent hydrogenases requires a number of accessory proteins which are involved in their maturation. The exact role of these proteins is not yet clear, but some seem to be required for the incorporation of the nickel ions []. One of these proteins is generally known as hypA. It is a protein of about 12 to 14 kDa that contains, in its C-terminal region, four conserved cysteines that form a zinc-finger like motif. Escherichia coli has two proteins that belong to this family, hypA and hybF. A homologue, MJ0214, has also been found in a number of archaeal species, including the genome of Methanocaldococcus jannaschii (Methanococcus jannaschii).; GO: 0016151 nickel ion binding, 0006464 protein modification process; PDB: 2KDX_A 3A44_D 3A43_B.
Probab=29.13 E-value=27 Score=27.51 Aligned_cols=25 Identities=24% Similarity=0.527 Sum_probs=9.7
Q ss_pred eeCCCCCCCceEeCCCCCCCccCCc
Q 021275 174 HPCNECKGTGETINDKDRCPQCKGE 198 (315)
Q Consensus 174 ~~C~~C~G~G~~~~~~~~C~~C~G~ 198 (315)
..|..|+-...+......|+.|.+.
T Consensus 71 ~~C~~Cg~~~~~~~~~~~CP~Cgs~ 95 (113)
T PF01155_consen 71 ARCRDCGHEFEPDEFDFSCPRCGSP 95 (113)
T ss_dssp EEETTTS-EEECHHCCHH-SSSSSS
T ss_pred EECCCCCCEEecCCCCCCCcCCcCC
Confidence 3444444443333222345555544
No 187
>COG2371 UreE Urease accessory protein UreE [Posttranslational modification, protein turnover, chaperones]
Probab=28.99 E-value=1.2e+02 Score=25.36 Aligned_cols=37 Identities=19% Similarity=0.232 Sum_probs=31.2
Q ss_pred EEEEeCCCCCeEEEecCCCceeeCCcEEEEeCCCCcce
Q 021275 273 QFVITHLDGRQLLIKSQPGEVVKPGKYNWMDVSLNLSA 310 (315)
Q Consensus 273 ~~~v~tldG~~~~i~~~~~~v~~pg~~~~i~~~~~~~~ 310 (315)
...+.|.+|+.+-|.+|.+.+..+|++...++ +++-+
T Consensus 35 r~R~~t~~G~ev~l~L~~~~~L~~GD~L~~~d-~~~i~ 71 (155)
T COG2371 35 RLRKTTDDGREVGLRLPRGVLLRDGDVLLAED-GELIV 71 (155)
T ss_pred EEEEeCCCCcEEEEEcCCCccccCCCEEEeCC-CcEEE
Confidence 34677889999999999998999999999998 77644
No 188
>PRK14873 primosome assembly protein PriA; Provisional
Probab=28.97 E-value=66 Score=33.52 Aligned_cols=51 Identities=22% Similarity=0.674 Sum_probs=33.1
Q ss_pred eEEccCCCCCCcccCCceecCCCcCCceEEEEEecCCcceeEeeeeCCCCCCCceEeCCCCCCCccCCceE
Q 021275 130 NVICTKCKGKGSKSGASMKCSGCQGSGMKVSIRHLGPSMIQQMQHPCNECKGTGETINDKDRCPQCKGEKV 200 (315)
Q Consensus 130 ~~~C~~C~G~G~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~~C~~C~G~G~~~~~~~~C~~C~G~g~ 200 (315)
...|..|. ....|+.|.+.=. + +. . .-.-.|..|+-.- . ...|+.|.+...
T Consensus 383 ~l~C~~Cg-------~~~~C~~C~~~L~-~--h~-~-----~~~l~Ch~CG~~~--~--p~~Cp~Cgs~~l 433 (665)
T PRK14873 383 SLACARCR-------TPARCRHCTGPLG-L--PS-A-----GGTPRCRWCGRAA--P--DWRCPRCGSDRL 433 (665)
T ss_pred eeEhhhCc-------CeeECCCCCCcee-E--ec-C-----CCeeECCCCcCCC--c--CccCCCCcCCcc
Confidence 37899995 4567999997421 1 10 0 1135699998642 2 389999998743
No 189
>smart00276 GLECT Galectin. Galectin - galactose-binding lectin
Probab=28.20 E-value=68 Score=25.50 Aligned_cols=41 Identities=20% Similarity=0.274 Sum_probs=27.7
Q ss_pred EEEecccccCCcEEEEcCCcCCCCC-------CCccCEEEEEEEecCC
Q 021275 208 EVIVEKGMQNGQKITFPGEADEAPD-------TVTGDIVFVLQQKEHP 248 (315)
Q Consensus 208 ~v~Ip~G~~~G~~i~l~g~G~~~~~-------~~~GDL~v~i~v~~~~ 248 (315)
+..||.++.+|+.|.+.|.=...++ ...+|+.+++++..+.
T Consensus 2 ~~~lp~~l~~G~~i~i~G~~~~~~~~F~inl~~~~~di~lH~n~rf~~ 49 (128)
T smart00276 2 TLPIPGGLKPGQTLTVRGIVLPDAKRFSINLLTGGDDIALHFNPRFNE 49 (128)
T ss_pred cccCCCCCCCCCEEEEEEEECCCCCEEEEEeecCCCCEEEEEeccCCC
Confidence 3568999999999999985543211 1235777777766553
No 190
>cd01491 Ube1_repeat1 Ubiquitin activating enzyme (E1), repeat 1. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the first repeat of Ub-E1.
Probab=28.13 E-value=2e+02 Score=26.54 Aligned_cols=59 Identities=20% Similarity=0.222 Sum_probs=40.1
Q ss_pred cccccCCcEEEEcC-CcCCCCCCCccCEEEEEEEecCCCcEEe---------CCcEEEEEecCHHHHhCCCE
Q 021275 212 EKGMQNGQKITFPG-EADEAPDTVTGDIVFVLQQKEHPKFKRK---------GDDLFVEHTLSLTEALCGFQ 273 (315)
Q Consensus 212 p~G~~~G~~i~l~g-~G~~~~~~~~GDL~v~i~v~~~~~f~r~---------g~dL~~~~~I~l~~al~G~~ 273 (315)
+.|.++|+.++|+. +||+..+ +.-..+|+++.+..|+-. ..-+..+++++...|..|+-
T Consensus 186 ~h~l~~gd~V~f~ev~gm~~lN---~~~~~~v~~~~~~~f~i~d~~~~~~y~~gG~~~qvK~~~~~~~~g~~ 254 (286)
T cd01491 186 RHGFEDGDYVTFSEVEGMTELN---GCEPRKIKVKGPYTFSIGDTSSFSEYIRGGIVTQVKLSPMAAFFGGL 254 (286)
T ss_pred ccCCcCCCEEEEeccCcchhhC---CCccEEEEECCCCeEEECcCcCcCccccCcEEEEEecccHHHHhhhH
Confidence 67999999999987 8886532 223467777766667653 12345666777777777764
No 191
>PRK00488 pheS phenylalanyl-tRNA synthetase subunit alpha; Validated
Probab=27.87 E-value=51 Score=31.32 Aligned_cols=20 Identities=55% Similarity=1.295 Sum_probs=11.9
Q ss_pred eEEccCCCCCCcccCCceecCCCcCCce
Q 021275 130 NVICTKCKGKGSKSGASMKCSGCQGSGM 157 (315)
Q Consensus 130 ~~~C~~C~G~G~~~~~~~~C~~C~G~G~ 157 (315)
.+.|..|+|.| |+.|+++|.
T Consensus 260 dv~~~~~~g~g--------c~~ck~~~W 279 (339)
T PRK00488 260 DVSCFKCGGKG--------CRVCKGTGW 279 (339)
T ss_pred EEEEeccCCCc--------ccccCCCCc
Confidence 35566666554 566666664
No 192
>PRK09678 DNA-binding transcriptional regulator; Provisional
Probab=27.17 E-value=2.1e+02 Score=20.67 Aligned_cols=35 Identities=23% Similarity=0.551 Sum_probs=23.9
Q ss_pred eecCCCcCCceEEEEEecCCcceeEeeeeCC--CCCCC
Q 021275 147 MKCSGCQGSGMKVSIRHLGPSMIQQMQHPCN--ECKGT 182 (315)
Q Consensus 147 ~~C~~C~G~G~~~~~~~~~~g~~~~~~~~C~--~C~G~ 182 (315)
..||.|+..-.+..++.+..+ +......|. .|+-+
T Consensus 2 m~CP~Cg~~a~irtSr~~s~~-~~~~Y~qC~N~eCg~t 38 (72)
T PRK09678 2 FHCPLCQHAAHARTSRYITDT-TKERYHQCQNVNCSAT 38 (72)
T ss_pred ccCCCCCCccEEEEChhcChh-hheeeeecCCCCCCCE
Confidence 358888888877777777766 344566776 77544
No 193
>COG1530 CafA Ribonucleases G and E [Translation, ribosomal structure and biogenesis]
Probab=27.10 E-value=68 Score=32.09 Aligned_cols=29 Identities=24% Similarity=0.584 Sum_probs=22.1
Q ss_pred EEEEecCCcceeEeeeeCCCCCCCceEeC
Q 021275 159 VSIRHLGPSMIQQMQHPCNECKGTGETIN 187 (315)
Q Consensus 159 ~~~~~~~~g~~~~~~~~C~~C~G~G~~~~ 187 (315)
+...+.++.+......+|+.|.|+|.+..
T Consensus 381 mtR~R~~~sl~~~~~~~cp~c~G~g~v~~ 409 (487)
T COG1530 381 MTRKRTRESLLEVLSERCPGCKGTGHVRS 409 (487)
T ss_pred EEEEecCCCCceeeeeECCCceeeEEEec
Confidence 34445577777888899999999998765
No 194
>cd01389 MATA_HMG-box MATA_HMG-box, class I member of the HMG-box superfamily of DNA-binding proteins. These proteins contain a single HMG box, and bind the minor groove of DNA in a highly sequence-specific manner. Members include the fungal mating type gene products MC, MATA1 and Ste11.
Probab=26.56 E-value=39 Score=24.25 Aligned_cols=43 Identities=9% Similarity=0.059 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHhCCCCCCCHHHHHHHHHHHhhcCCCcccccccc
Q 021275 15 LKKAYRKAAIKNHPDKGGDPEKFKELAQAYEVLSDPEKREIYDQ 58 (315)
Q Consensus 15 ik~ayr~la~~~hPd~~~~~~~f~~i~~Ay~~L~d~~~R~~YD~ 58 (315)
-.+.+|...+..||+.. ..+..+.|.+.|..|++.++...++.
T Consensus 12 f~~~~r~~~~~~~p~~~-~~eisk~~g~~Wk~ls~eeK~~y~~~ 54 (77)
T cd01389 12 YRQDKHAQLKTENPGLT-NNEISRIIGRMWRSESPEVKAYYKEL 54 (77)
T ss_pred HHHHHHHHHHHHCCCCC-HHHHHHHHHHHHhhCCHHHHHHHHHH
Confidence 34567778888899874 33888899999999998777654454
No 195
>cd00084 HMG-box High Mobility Group (HMG)-box is found in a variety of eukaryotic chromosomal proteins and transcription factors. HMGs bind to the minor groove of DNA and have been classified by DNA binding preferences. Two phylogenically distinct groups of Class I proteins bind DNA in a sequence specific fashion and contain a single HMG box. One group (SOX-TCF) includes transcription factors, TCF-1, -3, -4; and also SRY and LEF-1, which bind four-way DNA junctions and duplex DNA targets. The second group (MATA) includes fungal mating type gene products MC, MATA1 and Ste11. Class II and III proteins (HMGB-UBF) bind DNA in a non-sequence specific fashion and contain two or more tandem HMG boxes. Class II members include non-histone chromosomal proteins, HMG1 and HMG2, which bind to bent or distorted DNA such as four-way DNA junctions, synthetic DNA cruciforms, kinked cisplatin-modified DNA, DNA bulges, cross-overs in supercoiled DNA, and can cause looping of linear DNA. Class III member
Probab=26.39 E-value=34 Score=23.14 Aligned_cols=43 Identities=21% Similarity=0.279 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHhCCCCCCCHHHHHHHHHHHhhcCCCcccccccc
Q 021275 15 LKKAYRKAAIKNHPDKGGDPEKFKELAQAYEVLSDPEKREIYDQ 58 (315)
Q Consensus 15 ik~ayr~la~~~hPd~~~~~~~f~~i~~Ay~~L~d~~~R~~YD~ 58 (315)
-.+.++.-.+..||+.+ ..+..+.+.+.|..|++.++...+|.
T Consensus 11 f~~~~~~~~~~~~~~~~-~~~i~~~~~~~W~~l~~~~k~~y~~~ 53 (66)
T cd00084 11 FSQEHRAEVKAENPGLS-VGEISKILGEMWKSLSEEEKKKYEEK 53 (66)
T ss_pred HHHHHHHHHHHHCcCCC-HHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 34566777778888854 23788899999999997666554443
No 196
>KOG1758 consensus Mitochondrial F1F0-ATP synthase, subunit delta/ATP16 [Energy production and conversion]
Probab=25.99 E-value=1.3e+02 Score=25.13 Aligned_cols=41 Identities=22% Similarity=0.226 Sum_probs=30.3
Q ss_pred CEEEEeCCCCCeEEE--ecCCCceeeCCcEEEEeCCCCcceee
Q 021275 272 FQFVITHLDGRQLLI--KSQPGEVVKPGKYNWMDVSLNLSAFV 312 (315)
Q Consensus 272 ~~~~v~tldG~~~~i--~~~~~~v~~pg~~~~i~~~~~~~~~~ 312 (315)
..+.|||++|+.=.+ .+|-=++++||-+-...+.++.+-|.
T Consensus 47 ~qVdvPt~sG~~GVLanHVPti~~LkPGvvsV~~~~~~~~k~F 89 (159)
T KOG1758|consen 47 TQVDVPTLSGQIGVLANHVPTIQVLKPGVVSVHEGSGTKSKYF 89 (159)
T ss_pred EEEeccccCcceeeecccCcchheeccceEEEEeCCCcEEEEE
Confidence 357889999973222 36656789999999999999984443
No 197
>PRK03824 hypA hydrogenase nickel incorporation protein; Provisional
Probab=25.02 E-value=87 Score=25.46 Aligned_cols=11 Identities=18% Similarity=0.637 Sum_probs=6.6
Q ss_pred eeEEccCCCCC
Q 021275 129 RNVICTKCKGK 139 (315)
Q Consensus 129 ~~~~C~~C~G~ 139 (315)
....|..|+-.
T Consensus 69 ~~~~C~~CG~~ 79 (135)
T PRK03824 69 AVLKCRNCGNE 79 (135)
T ss_pred eEEECCCCCCE
Confidence 34667777633
No 198
>cd01390 HMGB-UBF_HMG-box HMGB-UBF_HMG-box, class II and III members of the HMG-box superfamily of DNA-binding proteins. These proteins bind the minor groove of DNA in a non-sequence specific fashion and contain two or more tandem HMG boxes. Class II members include non-histone chromosomal proteins, HMG1 and HMG2, which bind to bent or distorted DNA such as four-way DNA junctions, synthetic DNA cruciforms, kinked cisplatin-modified DNA, DNA bulges, cross-overs in supercoiled DNA, and can cause looping of linear DNA. Class III members include nucleolar and mitochondrial transcription factors, UBF and mtTF1, which bind four-way DNA junctions.
Probab=24.64 E-value=39 Score=23.03 Aligned_cols=40 Identities=28% Similarity=0.358 Sum_probs=28.2
Q ss_pred HHHHHHHHhCCCCCCCHHHHHHHHHHHhhcCCCcccccccc
Q 021275 18 AYRKAAIKNHPDKGGDPEKFKELAQAYEVLSDPEKREIYDQ 58 (315)
Q Consensus 18 ayr~la~~~hPd~~~~~~~f~~i~~Ay~~L~d~~~R~~YD~ 58 (315)
..|.-.+.-||+.. ..+..+.|.+.|..|++.++....+.
T Consensus 14 ~~r~~~~~~~p~~~-~~~i~~~~~~~W~~ls~~eK~~y~~~ 53 (66)
T cd01390 14 EQRPKLKKENPDAS-VTEVTKILGEKWKELSEEEKKKYEEK 53 (66)
T ss_pred HHHHHHHHHCcCCC-HHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 34555566788843 33888999999999997766655454
No 199
>PF12387 Peptidase_C74: Pestivirus NS2 peptidase; InterPro: IPR022120 The pestivirus NS2 peptidase is responsible for single cleavage between NS2 and NS3 of the Bovine viral diarrhea virus 1 polyprotein, a cleavage that is correlated with cytopathogenicity []. The peptidase is activated by its interaction with 'J-domain protein interacting with viral protein' - Jiv. ; GO: 0003968 RNA-directed RNA polymerase activity, 0004197 cysteine-type endopeptidase activity, 0004252 serine-type endopeptidase activity, 0016817 hydrolase activity, acting on acid anhydrides, 0017111 nucleoside-triphosphatase activity, 0070008 serine-type exopeptidase activity
Probab=24.56 E-value=51 Score=28.06 Aligned_cols=23 Identities=35% Similarity=0.923 Sum_probs=13.6
Q ss_pred EEccCCCCCCcccCCceecCCCcCCc
Q 021275 131 VICTKCKGKGSKSGASMKCSGCQGSG 156 (315)
Q Consensus 131 ~~C~~C~G~G~~~~~~~~C~~C~G~G 156 (315)
+.|..|.+.-... .+||.|++.|
T Consensus 163 ilCtvCe~r~w~g---~~CPKCGr~G 185 (200)
T PF12387_consen 163 ILCTVCEGREWKG---GNCPKCGRHG 185 (200)
T ss_pred EEEeeeecCccCC---CCCCcccCCC
Confidence 6677777654322 3366666666
No 200
>PF09285 Elong-fact-P_C: Elongation factor P, C-terminal; InterPro: IPR015365 These nucleic acid binding domains are predominantly found in elongation factor P, where they adopt an OB-fold, with five beta-strands forming a beta-barrel in a Greek-key topology []. ; GO: 0043043 peptide biosynthetic process, 0005737 cytoplasm; PDB: 1YBY_A 3OYY_B 1UEB_B 3HUW_V 3HUY_V 3A5Z_H.
Probab=24.53 E-value=72 Score=21.92 Aligned_cols=20 Identities=25% Similarity=0.237 Sum_probs=13.9
Q ss_pred EEEEEecccccCCcEEEEcC
Q 021275 206 VLEVIVEKGMQNGQKITFPG 225 (315)
Q Consensus 206 ~~~v~Ip~G~~~G~~i~l~g 225 (315)
-+.|.+|+-++.|++|++.-
T Consensus 29 G~~i~VP~FI~~Gd~I~VdT 48 (56)
T PF09285_consen 29 GAEIQVPLFIEEGDKIKVDT 48 (56)
T ss_dssp S-EEEEETT--TT-EEEEET
T ss_pred CCEEEccceecCCCEEEEEC
Confidence 35799999999999999974
No 201
>PRK14890 putative Zn-ribbon RNA-binding protein; Provisional
Probab=24.04 E-value=71 Score=22.20 Aligned_cols=17 Identities=29% Similarity=1.099 Sum_probs=7.9
Q ss_pred CCCCCCCceEeCCCCCCCccC
Q 021275 176 CNECKGTGETINDKDRCPQCK 196 (315)
Q Consensus 176 C~~C~G~G~~~~~~~~C~~C~ 196 (315)
|.+|+-.+.. ..|+.|.
T Consensus 39 C~~CRk~~~~----Y~CP~CG 55 (59)
T PRK14890 39 CEKCRKQSNP----YTCPKCG 55 (59)
T ss_pred chhHHhcCCc----eECCCCC
Confidence 5555444322 3455554
No 202
>PRK14113 urease accessory protein UreE; Provisional
Probab=24.01 E-value=2.1e+02 Score=23.87 Aligned_cols=46 Identities=11% Similarity=0.009 Sum_probs=35.7
Q ss_pred EEEecCHHHHhCCCEEEEeCCCCCeEEEecCCCceeeCCcEEEEeCC
Q 021275 259 VEHTLSLTEALCGFQFVITHLDGRQLLIKSQPGEVVKPGKYNWMDVS 305 (315)
Q Consensus 259 ~~~~I~l~~al~G~~~~v~tldG~~~~i~~~~~~v~~pg~~~~i~~~ 305 (315)
-++.+++ +...=....+.|-+|+.+-|.+|.+.++.+|++....+.
T Consensus 17 ~~v~L~~-~~r~r~R~R~~t~~G~e~~l~L~r~~~L~dGD~L~~ddg 62 (152)
T PRK14113 17 DSITLDH-DTRKKGRIKSVTDNGEEIGVFLERGHPLLVGEILKTECG 62 (152)
T ss_pred cEEEECH-HHhhhceEEEEcCCCcEEEEECCCCcccCCCCEEEcCCC
Confidence 3466666 445666778889999999999999989999999876654
No 203
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=23.96 E-value=54 Score=29.92 Aligned_cols=33 Identities=27% Similarity=0.414 Sum_probs=25.2
Q ss_pred EEEecCHHHHhCCC-EEEEeCCCCCeEEEecCCC
Q 021275 259 VEHTLSLTEALCGF-QFVITHLDGRQLLIKSQPG 291 (315)
Q Consensus 259 ~~~~I~l~~al~G~-~~~v~tldG~~~~i~~~~~ 291 (315)
++.+|-|+||++|- ..+|++.|+..-.+.|.|.
T Consensus 18 YDhTIRfWqa~tG~C~rTiqh~dsqVNrLeiTpd 51 (311)
T KOG0315|consen 18 YDHTIRFWQALTGICSRTIQHPDSQVNRLEITPD 51 (311)
T ss_pred CcceeeeeehhcCeEEEEEecCccceeeEEEcCC
Confidence 34678999999995 5789999998656665543
No 204
>PF13533 Biotin_lipoyl_2: Biotin-lipoyl like
Probab=23.68 E-value=1.7e+02 Score=19.05 Aligned_cols=32 Identities=25% Similarity=0.204 Sum_probs=24.2
Q ss_pred EEEeCC-CCCeEEEecCCCceeeCCcEEEEeCC
Q 021275 274 FVITHL-DGRQLLIKSQPGEVVKPGKYNWMDVS 305 (315)
Q Consensus 274 ~~v~tl-dG~~~~i~~~~~~v~~pg~~~~i~~~ 305 (315)
+.|..+ +|+...|.+..|+.++-|+++..=..
T Consensus 3 ~~I~~~~~G~V~~v~V~~G~~VkkGd~L~~ld~ 35 (50)
T PF13533_consen 3 VTIQAPVSGRVESVYVKEGQQVKKGDVLLVLDS 35 (50)
T ss_pred EEEeCCCCEEEEEEEecCCCEEcCCCEEEEECc
Confidence 455444 78777899999999999998866443
No 205
>COG0089 RplW Ribosomal protein L23 [Translation, ribosomal structure and biogenesis]
Probab=23.43 E-value=70 Score=24.48 Aligned_cols=21 Identities=14% Similarity=0.118 Sum_probs=16.6
Q ss_pred eeCCCCCCCHHHHHHHHHHHH
Q 021275 3 FSESRKNASQDDLKKAYRKAA 23 (315)
Q Consensus 3 vLgv~~~a~~~~ik~ayr~la 23 (315)
++-|+++|+..+||+|...|-
T Consensus 25 vF~V~~~AtK~~IK~AvE~lF 45 (94)
T COG0089 25 VFIVDPDATKPEIKAAVEELF 45 (94)
T ss_pred EEEECCCCCHHHHHHHHHHHh
Confidence 466888899999998887753
No 206
>PF04246 RseC_MucC: Positive regulator of sigma(E), RseC/MucC; InterPro: IPR007359 This bacterial family of integral membrane proteins represents a positive regulator of the sigma(E) transcription factor, namely RseC/MucC. The sigma(E) transcription factor is up-regulated by cell envelope protein misfolding, and regulates the expression of genes that are collectively termed ECF (devoted to Extra-Cellular Functions) []. In Pseudomonas aeruginosa, derepression of sigma(E) is associated with the alginate-overproducing phenotype characteristic of chronic respiratory tract colonization in cystic fibrosis patients. The mechanism by which RseC/MucC positively regulates the sigma(E) transcription factor is unknown. RseC is also thought to have a role in thiamine biosynthesis in Salmonella typhimurium []. In addition, this family also includes an N-terminal part of RnfF, a Rhodobacter capsulatus protein, of unknown function, that is essential for nitrogen fixation. This protein also contains a domain found in ApbE protein IPR003374 from INTERPRO, which is itself involved in thiamine biosynthesis.
Probab=22.88 E-value=69 Score=25.78 Aligned_cols=22 Identities=9% Similarity=0.092 Sum_probs=15.5
Q ss_pred eEEEEEEecccccCCcEEEEcC
Q 021275 204 KKVLEVIVEKGMQNGQKITFPG 225 (315)
Q Consensus 204 ~~~~~v~Ip~G~~~G~~i~l~g 225 (315)
...+++.-+.+.+.||.+.+.-
T Consensus 41 ~~~~~~~~~~~~~~GD~V~v~i 62 (135)
T PF04246_consen 41 PITFRAPNPIGAKVGDRVEVEI 62 (135)
T ss_pred cEEEEecCCCCCCCCCEEEEEe
Confidence 3556666677888888877753
No 207
>cd01802 AN1_N ubiquitin-like domain of AN1. AN1 (also known as ANUBL1 and RSD-7) is ubiquitin-like protein with a testis-specific expression in rats that has an N-terminal ubiquitin-like domain and a C-terminal zinc-binding domain. Unlike ubiquitin polyproteins and most ubiquitin fusion proteins, the N-terminal ubiquitin-like domain of An1 does not undergo proteolytic processing. The function of AN1 is unknown.
Probab=22.82 E-value=1.5e+02 Score=22.83 Aligned_cols=43 Identities=21% Similarity=0.368 Sum_probs=28.7
Q ss_pred ecCCCcEEeC-CcEEEEEecCHHHHhCCCEEEEeCCCCCeEEEecCCCc
Q 021275 245 KEHPKFKRKG-DDLFVEHTLSLTEALCGFQFVITHLDGRQLLIKSQPGE 292 (315)
Q Consensus 245 ~~~~~f~r~g-~dL~~~~~I~l~~al~G~~~~v~tldG~~~~i~~~~~~ 292 (315)
+++|.|..+. ..+++-++ +.+ +..+.|.++.|+++.|.+.+.+
T Consensus 5 ~~~~~~~~~~~~~~~~~~~--~~~---~M~I~Vk~l~G~~~~leV~~~~ 48 (103)
T cd01802 5 KEPPFFNEDNMGPFHYKLP--FYD---TMELFIETLTGTCFELRVSPFE 48 (103)
T ss_pred cCCCccccCCcceeEEeec--cCC---CEEEEEEcCCCCEEEEEeCCCC
Confidence 4667776654 24555444 222 5788999999998888877654
No 208
>PF14354 Lar_restr_allev: Restriction alleviation protein Lar
Probab=22.78 E-value=1.1e+02 Score=20.62 Aligned_cols=9 Identities=22% Similarity=0.792 Sum_probs=5.2
Q ss_pred eeeCCCCCC
Q 021275 173 QHPCNECKG 181 (315)
Q Consensus 173 ~~~C~~C~G 181 (315)
...|..|+.
T Consensus 29 ~V~C~~Cga 37 (61)
T PF14354_consen 29 YVECTDCGA 37 (61)
T ss_pred EEEcCCCCC
Confidence 345766654
No 209
>smart00440 ZnF_C2C2 C2C2 Zinc finger. Nucleic-acid-binding motif in transcriptional elongation factor TFIIS and RNA polymerases.
Probab=22.78 E-value=1.6e+02 Score=18.52 Aligned_cols=17 Identities=12% Similarity=0.249 Sum_probs=9.6
Q ss_pred ecCCCcCCceEEEEEec
Q 021275 148 KCSGCQGSGMKVSIRHL 164 (315)
Q Consensus 148 ~C~~C~G~G~~~~~~~~ 164 (315)
.|+.|+.........|+
T Consensus 2 ~Cp~C~~~~a~~~q~Q~ 18 (40)
T smart00440 2 PCPKCGNREATFFQLQT 18 (40)
T ss_pred cCCCCCCCeEEEEEEcc
Confidence 47777666655544433
No 210
>PRK00762 hypA hydrogenase nickel incorporation protein; Provisional
Probab=22.75 E-value=1.2e+02 Score=24.29 Aligned_cols=22 Identities=9% Similarity=0.354 Sum_probs=12.1
Q ss_pred cccceeeEeec-eeeEEccCCCCC
Q 021275 117 LYNGTSKKLSL-SRNVICTKCKGK 139 (315)
Q Consensus 117 ~~~G~~~~~~~-~~~~~C~~C~G~ 139 (315)
.+.|+...+.. +-...| .|+-.
T Consensus 56 ~~egA~L~I~~vp~~~~C-~Cg~~ 78 (124)
T PRK00762 56 IAEDADLIVEMIPVEIEC-ECGYE 78 (124)
T ss_pred CcCCCEEEEEecCeeEEe-eCcCc
Confidence 44555555443 345678 88744
No 211
>smart00778 Prim_Zn_Ribbon Zinc-binding domain of primase-helicase. This region represents the zinc binding domain. It is found in the N-terminal region of the bacteriophage P4 alpha protein, which is a multifunctional protein with origin recognition, helicase and primase activities.
Probab=22.44 E-value=65 Score=20.14 Aligned_cols=11 Identities=27% Similarity=0.712 Sum_probs=5.3
Q ss_pred EEccCCCCCCc
Q 021275 131 VICTKCKGKGS 141 (315)
Q Consensus 131 ~~C~~C~G~G~ 141 (315)
..||.|.|+..
T Consensus 4 ~pCP~CGG~Dr 14 (37)
T smart00778 4 GPCPNCGGSDR 14 (37)
T ss_pred cCCCCCCCccc
Confidence 34555555443
No 212
>PF13248 zf-ribbon_3: zinc-ribbon domain
Probab=22.03 E-value=44 Score=18.87 Aligned_cols=20 Identities=35% Similarity=0.811 Sum_probs=9.5
Q ss_pred eCCCCCCCceEeCCCCCCCccC
Q 021275 175 PCNECKGTGETINDKDRCPQCK 196 (315)
Q Consensus 175 ~C~~C~G~G~~~~~~~~C~~C~ 196 (315)
.|+.|+- .+....+.|+.|.
T Consensus 4 ~Cp~Cg~--~~~~~~~fC~~CG 23 (26)
T PF13248_consen 4 FCPNCGA--EIDPDAKFCPNCG 23 (26)
T ss_pred CCcccCC--cCCcccccChhhC
Confidence 4555543 1222345666664
No 213
>COG3058 FdhE Uncharacterized protein involved in formate dehydrogenase formation [Posttranslational modification, protein turnover, chaperones]
Probab=21.93 E-value=40 Score=31.00 Aligned_cols=16 Identities=13% Similarity=0.239 Sum_probs=10.9
Q ss_pred ceeeEEccCCCCCCcc
Q 021275 127 LSRNVICTKCKGKGSK 142 (315)
Q Consensus 127 ~~~~~~C~~C~G~G~~ 142 (315)
+.+...||.|.+.-..
T Consensus 182 ~e~~~~CPvCGS~Pva 197 (308)
T COG3058 182 NESRQYCPVCGSMPVA 197 (308)
T ss_pred ccccccCCCcCCCCcc
Confidence 3556789999876544
No 214
>PF12791 RsgI_N: Anti-sigma factor N-terminus; InterPro: IPR024449 The heat shock genes in Bacillus subtilis can be classified into several groups according to their regulation [], and the sigma gene, sigI, of Bacillus subtilis belongs to the group IV heat-shock response genes and has many orthologues in the bacterial phylum Firmicutes []. Regulation of sigma factor I is carried out by RsgI from the same operon. This entry represents the N-terminal cytoplasmic portion of RsgI ('upstream' of the single transmembrane helix) which has been shown to interact directly with Sigma-I [].
Probab=21.71 E-value=2.2e+02 Score=18.92 Aligned_cols=37 Identities=22% Similarity=0.213 Sum_probs=28.6
Q ss_pred CCCEEEEeCCCCCeEEEecCCCceeeCCcEEEEeCCCCc
Q 021275 270 CGFQFVITHLDGRQLLIKSQPGEVVKPGKYNWMDVSLNL 308 (315)
Q Consensus 270 ~G~~~~v~tldG~~~~i~~~~~~v~~pg~~~~i~~~~~~ 308 (315)
.+-...|-|.||.-+.|+.+++ .+-|++..++.....
T Consensus 4 ~~~~aiVlT~dGeF~~ik~~~~--~~vG~eI~~~~~~~~ 40 (56)
T PF12791_consen 4 KKKYAIVLTPDGEFIKIKRKPG--MEVGQEIEFDEKDII 40 (56)
T ss_pred cCCEEEEEcCCCcEEEEeCCCC--CcccCEEEEechhhc
Confidence 3556788999999999998766 777888877765543
No 215
>KOG0005 consensus Ubiquitin-like protein [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=21.69 E-value=75 Score=22.16 Aligned_cols=21 Identities=19% Similarity=0.438 Sum_probs=17.3
Q ss_pred EEEEeCCCCCeEEEecCCCce
Q 021275 273 QFVITHLDGRQLLIKSQPGEV 293 (315)
Q Consensus 273 ~~~v~tldG~~~~i~~~~~~v 293 (315)
.+.|.||.|+.+.|.|.|.+-
T Consensus 2 ~iKvktLt~KeIeidIep~Dk 22 (70)
T KOG0005|consen 2 LIKVKTLTGKEIEIDIEPTDK 22 (70)
T ss_pred eeeEeeeccceEEEeeCcchH
Confidence 478899999999998887753
No 216
>TIGR02098 MJ0042_CXXC MJ0042 family finger-like domain. This domain contains a CXXCX(19)CXXC motif suggestive of both zinc fingers and thioredoxin, usually found at the N-terminus of prokaryotic proteins. One partially characterized gene, agmX, is among a large set in Myxococcus whose interruption affects adventurous gliding motility.
Probab=21.57 E-value=76 Score=19.33 Aligned_cols=8 Identities=25% Similarity=0.800 Sum_probs=4.4
Q ss_pred eeCCCCCC
Q 021275 174 HPCNECKG 181 (315)
Q Consensus 174 ~~C~~C~G 181 (315)
..|+.|+.
T Consensus 26 v~C~~C~~ 33 (38)
T TIGR02098 26 VRCGKCGH 33 (38)
T ss_pred EECCCCCC
Confidence 45666653
No 217
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=21.44 E-value=64 Score=33.98 Aligned_cols=38 Identities=18% Similarity=0.556 Sum_probs=25.1
Q ss_pred EEccCCCCCCccc--CCceecCCCcCCceEEEEEecCCcceeEeeeeCCCCCCC
Q 021275 131 VICTKCKGKGSKS--GASMKCSGCQGSGMKVSIRHLGPSMIQQMQHPCNECKGT 182 (315)
Q Consensus 131 ~~C~~C~G~G~~~--~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~~C~~C~G~ 182 (315)
..|+.|...=..- .....|..|+-.. .+...|+.|++.
T Consensus 445 ~~Cp~Cd~~lt~H~~~~~L~CH~Cg~~~--------------~~p~~Cp~Cgs~ 484 (730)
T COG1198 445 AECPNCDSPLTLHKATGQLRCHYCGYQE--------------PIPQSCPECGSE 484 (730)
T ss_pred ccCCCCCcceEEecCCCeeEeCCCCCCC--------------CCCCCCCCCCCC
Confidence 5689998652221 1246688888664 246779999888
No 218
>PRK13261 ureE urease accessory protein UreE; Provisional
Probab=21.19 E-value=3.1e+02 Score=22.85 Aligned_cols=46 Identities=20% Similarity=0.278 Sum_probs=35.9
Q ss_pred EEEecCHHHHhCCCEEEEeCCCCCeEEEecCCCceeeCCcEEEEeCC
Q 021275 259 VEHTLSLTEALCGFQFVITHLDGRQLLIKSQPGEVVKPGKYNWMDVS 305 (315)
Q Consensus 259 ~~~~I~l~~al~G~~~~v~tldG~~~~i~~~~~~v~~pg~~~~i~~~ 305 (315)
-.+.++..++ .-....+.|-+|+.+-|.+|.+..+++|++....+.
T Consensus 22 ~~v~L~~~~r-~k~r~r~~t~~G~e~~i~L~r~~~L~dGDvL~~d~~ 67 (159)
T PRK13261 22 ETVTLEADER-VKRRLRVTTDHGEEIGLRLPRGTVLRDGDVLFLDDG 67 (159)
T ss_pred eEEEECHHHh-hceeEEEECCCCCEEEEECCCCCccCCCCEEEeCCC
Confidence 3466776664 444567788899999999999889999999988773
No 219
>COG5402 Uncharacterized conserved protein [Function unknown]
Probab=21.02 E-value=1.5e+02 Score=25.24 Aligned_cols=38 Identities=24% Similarity=0.324 Sum_probs=28.9
Q ss_pred HhCCCEEEEeCCCCCeEEEecCCCceeeCCcEEEEeCCCCcc
Q 021275 268 ALCGFQFVITHLDGRQLLIKSQPGEVVKPGKYNWMDVSLNLS 309 (315)
Q Consensus 268 al~G~~~~v~tldG~~~~i~~~~~~v~~pg~~~~i~~~~~~~ 309 (315)
||.+.++ +..-||+ +.|++.|. -+||.-.-|+|+||+-
T Consensus 126 Al~s~~V-lrs~Dg~-~~I~vsp~--a~pgnWl~~~g~g~f~ 163 (194)
T COG5402 126 ALNSRTV-LRSADGS-WVITVSPD--AQPGNWLPVRGEGNFI 163 (194)
T ss_pred heeceee-eeecCCc-EEEEECCC--CCCCceeEecCCccEE
Confidence 4555443 3566887 67888777 8999999999999974
No 220
>PRK05580 primosome assembly protein PriA; Validated
Probab=20.91 E-value=68 Score=33.45 Aligned_cols=39 Identities=21% Similarity=0.532 Sum_probs=24.6
Q ss_pred eEEccCCCCCCcc--cCCceecCCCcCCceEEEEEecCCcceeEeeeeCCCCCCC
Q 021275 130 NVICTKCKGKGSK--SGASMKCSGCQGSGMKVSIRHLGPSMIQQMQHPCNECKGT 182 (315)
Q Consensus 130 ~~~C~~C~G~G~~--~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~~C~~C~G~ 182 (315)
...|+.|.+.=.. ......|..|+-+- .+...|+.|++.
T Consensus 390 ~~~C~~C~~~l~~h~~~~~l~Ch~Cg~~~--------------~~~~~Cp~Cg~~ 430 (679)
T PRK05580 390 VAECPHCDASLTLHRFQRRLRCHHCGYQE--------------PIPKACPECGST 430 (679)
T ss_pred ccCCCCCCCceeEECCCCeEECCCCcCCC--------------CCCCCCCCCcCC
Confidence 4679999874221 12345688888654 235678888776
No 221
>PRK14714 DNA polymerase II large subunit; Provisional
Probab=20.54 E-value=63 Score=35.91 Aligned_cols=35 Identities=26% Similarity=0.727 Sum_probs=25.9
Q ss_pred ceecCCCcCCceEEEEEecCCcceeEeeeeCCCCCCCceEeCCCCCCCccCCc
Q 021275 146 SMKCSGCQGSGMKVSIRHLGPSMIQQMQHPCNECKGTGETINDKDRCPQCKGE 198 (315)
Q Consensus 146 ~~~C~~C~G~G~~~~~~~~~~g~~~~~~~~C~~C~G~G~~~~~~~~C~~C~G~ 198 (315)
...|+.|+.... ...|+.|+..-.. ...|+.|...
T Consensus 667 ~rkCPkCG~~t~---------------~~fCP~CGs~te~---vy~CPsCGae 701 (1337)
T PRK14714 667 RRRCPSCGTETY---------------ENRCPDCGTHTEP---VYVCPDCGAE 701 (1337)
T ss_pred EEECCCCCCccc---------------cccCcccCCcCCC---ceeCccCCCc
Confidence 467999998652 3489999887432 2589999975
No 222
>smart00841 Elong-fact-P_C Elongation factor P, C-terminal. These nucleic acid binding domains are predominantly found in elongation factor P, where they adopt an OB-fold, with five beta-strands forming a beta-barrel in a Greek-key topology PUBMED:15210970.
Probab=20.54 E-value=80 Score=21.68 Aligned_cols=20 Identities=25% Similarity=0.134 Sum_probs=17.4
Q ss_pred EEEEEecccccCCcEEEEcC
Q 021275 206 VLEVIVEKGMQNGQKITFPG 225 (315)
Q Consensus 206 ~~~v~Ip~G~~~G~~i~l~g 225 (315)
-++|.+|+-++.|++|++.-
T Consensus 29 G~~i~VP~FI~~Gd~I~V~T 48 (56)
T smart00841 29 GAVVQVPLFINEGDKIKVDT 48 (56)
T ss_pred CCEEEcCCcccCCCEEEEEC
Confidence 46799999999999999864
No 223
>PF05180 zf-DNL: DNL zinc finger; InterPro: IPR007853 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The DNL-type zinc finger is found in Tim15, a zinc finger protein essential for protein import into mitochondria. Mitochondrial functions rely on the correct transport of resident proteins synthesized in the cytosol to mitochondria. Protein import into mitochondria is mediated by membrane protein complexes, protein translocators, in the outer and inner mitochondrial membranes, in cooperation with their assistant proteins in the cytosol, intermembrane space and matrix. Proteins destined to the mitochondrial matrix cross the outer membrane with the aid of the outer membrane translocator, the tOM40 complex, and then the inner membrane with the aid of the inner membrane translocator, the TIM23 complex, and mitochondrial motor and chaperone (MMC) proteins including mitochondrial heat- shock protein 70 (mtHsp70), and translocase in the inner mitochondrial membrane (Tim)15. Tim15 is also known as zinc finger motif (Zim)17 or mtHsp70 escort protein (Hep)1. Tim15 contains a zinc-finger motif (CXXC and CXXC) of ~100 residues, which has been named DNL after a short C-terminal motif of D(N/H)L [, , ]. The DNL-type zinc finger is an L-shaped molecule. The two CXXC motifs are located at the end of the L, and are sandwiched by two- stranded antiparallel beta-sheets. Two short alpha-helices constitute another leg of the L. The outer (convex) face of the L has a large acidic groove, which is lined with five acidic residues, whereas the inner (concave) face of the L has two positively charged residues, next to the CXXC motifs []. This entry represents the DNL-type zinc finger.; GO: 0008270 zinc ion binding; PDB: 2E2Z_A.
Probab=20.45 E-value=63 Score=23.00 Aligned_cols=11 Identities=18% Similarity=0.664 Sum_probs=6.4
Q ss_pred eecCCCcCCce
Q 021275 147 MKCSGCQGSGM 157 (315)
Q Consensus 147 ~~C~~C~G~G~ 157 (315)
-||..|+.+-.
T Consensus 5 FTC~~C~~Rs~ 15 (66)
T PF05180_consen 5 FTCNKCGTRSA 15 (66)
T ss_dssp EEETTTTEEEE
T ss_pred EEcCCCCCccc
Confidence 35677765543
No 224
>PF01096 TFIIS_C: Transcription factor S-II (TFIIS); InterPro: IPR001222 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a zinc finger motif found in transcription factor IIs (TFIIS). In eukaryotes the initiation of transcription of protein encoding genes by polymerase II (Pol II) is modulated by general and specific transcription factors. The general transcription factors operate through common promoters elements (such as the TATA box). At least eight different proteins associate to form the general transcription factors: TFIIA, -IIB, -IID, -IIE, -IIF, -IIG, -IIH and -IIS []. During mRNA elongation, Pol II can encounter DNA sequences that cause reverse movement of the enzyme. Such backtracking involves extrusion of the RNA 3'-end into the pore, and can lead to transcriptional arrest. Escape from arrest requires cleavage of the extruded RNA with the help of TFIIS, which induces mRNA cleavage by enhancing the intrinsic nuclease activity of RNA polymerase (Pol) II, past template-encoded pause sites []. TFIIS extends from the polymerase surface via a pore to the internal active site. Two essential and invariant acidic residues in a TFIIS loop complement the Pol II active site and could position a metal ion and a water molecule for hydrolytic RNA cleavage. TFIIS also induces extensive structural changes in Pol II that would realign nucleic acids in the active centre. TFIIS is a protein of about 300 amino acids. It contains three regions: a variable N-terminal domain not required for TFIIS activity; a conserved central domain required for Pol II binding; and a conserved C-terminal C4-type zinc finger essential for RNA cleavage. The zinc finger folds in a conformation termed a zinc ribbon [] characterised by a three-stranded antiparallel beta-sheet and two beta-hairpins. A backbone model for Pol II-TFIIS complex was obtained from X-ray analysis. It shows that a beta hairpin protrudes from the zinc finger and complements the pol II active site []. Some viral proteins also contain the TFIIS zinc ribbon C-terminal domain. The Vaccinia virus protein, unlike its eukaryotic homologue, is an integral RNA polymerase subunit rather than a readily separable transcription factor []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003676 nucleic acid binding, 0008270 zinc ion binding, 0006351 transcription, DNA-dependent; PDB: 3M4O_I 3S14_I 2E2J_I 4A3J_I 3HOZ_I 1TWA_I 3S1Q_I 3S1N_I 1TWG_I 3I4M_I ....
Probab=20.44 E-value=1.7e+02 Score=18.16 Aligned_cols=17 Identities=18% Similarity=0.270 Sum_probs=8.8
Q ss_pred ecCCCcCCceEEEEEec
Q 021275 148 KCSGCQGSGMKVSIRHL 164 (315)
Q Consensus 148 ~C~~C~G~G~~~~~~~~ 164 (315)
+|+.|+.........|+
T Consensus 2 ~Cp~Cg~~~a~~~~~Q~ 18 (39)
T PF01096_consen 2 KCPKCGHNEAVFFQIQT 18 (39)
T ss_dssp --SSS-SSEEEEEEESS
T ss_pred CCcCCCCCeEEEEEeec
Confidence 47777777766554444
No 225
>COG0143 MetG Methionyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=20.39 E-value=66 Score=32.74 Aligned_cols=68 Identities=15% Similarity=0.308 Sum_probs=37.6
Q ss_pred EEccCCCCCCcccCCceecCCCcCCceEEEEEecCCcceeEeeeeCCCCCCCceEeC-CCCCCCccCCceEEEEeEEEEE
Q 021275 131 VICTKCKGKGSKSGASMKCSGCQGSGMKVSIRHLGPSMIQQMQHPCNECKGTGETIN-DKDRCPQCKGEKVIQEKKVLEV 209 (315)
Q Consensus 131 ~~C~~C~G~G~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~~C~~C~G~G~~~~-~~~~C~~C~G~g~~~~~~~~~v 209 (315)
--|+.|.---..+...-+|+.|++... -.+.|..|+..-.... ....|..|..+-..+.+...-+
T Consensus 127 ~Yc~~~e~fl~dr~v~g~cp~cg~~~a--------------rGD~Ce~Cg~~~~P~~l~~p~~~i~g~~p~~r~~~hyFf 192 (558)
T COG0143 127 LYCVSCERFLPDRYVEGTCPKCGGEDA--------------RGDQCENCGRTLDPTELINPVCVISGATPEVREEEHYFF 192 (558)
T ss_pred eEcccccccccchheeccCCCcCcccc--------------CcchhhhccCcCCchhcCCCeeEeeCCCcccccceeEEE
Confidence 446666544444444456777775541 1356777754433211 1467778877766666665554
Q ss_pred Eec
Q 021275 210 IVE 212 (315)
Q Consensus 210 ~Ip 212 (315)
+++
T Consensus 193 ~L~ 195 (558)
T COG0143 193 RLS 195 (558)
T ss_pred EHH
Confidence 444
No 226
>PF01333 Apocytochr_F_C: Apocytochrome F, C-terminal; InterPro: IPR002325 The cytochrome b6f integral membrane protein complex transfers electrons between the two reaction centre complexes of oxygenic photosynthetic membranes, and participates in formation of the transmembrane electrochemical proton gradient by also transferring protons from the stromal to the internal lumen compartment []. The cytochrome b6f complex contains four polypeptides: cytochrome f (285 aa); cytochrome b6 (215 aa); Rieske iron-sulphur protein (179 aa); and subunit IV (160 aa) []. In its structure and functions, the cytochrome b6f complex bears extensive analogy to the cytochrome bc1 complex of mitochondria and photosynthetic purple bacteria; cytochrome f (cyt f) plays a role analogous to that of cytochrome c1, in spite of their different structures [].; GO: 0005506 iron ion binding, 0009055 electron carrier activity, 0020037 heme binding, 0015979 photosynthesis, 0031361 integral to thylakoid membrane; PDB: 2E75_C 2E74_C 1VF5_P 2D2C_P 2E76_C 1TU2_B 2ZT9_C 1E2V_A 1CFM_A 1E2W_B ....
Probab=20.37 E-value=65 Score=25.56 Aligned_cols=31 Identities=23% Similarity=0.433 Sum_probs=19.7
Q ss_pred CCCEEEEeCCCCCeEEEecCCCc--eeeCCcEE
Q 021275 270 CGFQFVITHLDGRQLLIKSQPGE--VVKPGKYN 300 (315)
Q Consensus 270 ~G~~~~v~tldG~~~~i~~~~~~--v~~pg~~~ 300 (315)
-|..+.|.|-||+.+.-+||+|= +++.|+..
T Consensus 22 gg~~vtI~~~dG~~v~~~IP~GpeLiV~eG~~V 54 (118)
T PF01333_consen 22 GGYEVTIETSDGETVVETIPAGPELIVSEGQSV 54 (118)
T ss_dssp SEEEEEEETTTSEEEEEEEESSS-BS--TT-EE
T ss_pred CCEEEEEECCCCCEEEEecCCCCeEEEcCCCEE
Confidence 35568899999987777777653 34555544
No 227
>TIGR03039 PS_II_CP47 photosystem II chlorophyll-binding protein CP47.
Probab=20.20 E-value=2.2e+02 Score=28.20 Aligned_cols=27 Identities=37% Similarity=0.705 Sum_probs=21.3
Q ss_pred HHHHHhhcCCCcccccccccccccccccc
Q 021275 40 LAQAYEVLSDPEKREIYDQYGEDALKEGM 68 (315)
Q Consensus 40 i~~Ay~~L~d~~~R~~YD~~g~~~~~~g~ 68 (315)
++|||+.+ |+|-+.||--|....+.|.
T Consensus 298 ~~~a~~~i--p~kl~fydyign~pakggl 324 (504)
T TIGR03039 298 LEEAWSAI--PEKLAFYDYVGNSPAKGGL 324 (504)
T ss_pred HHHHHhhC--chhhhhhhhcCCCcccCce
Confidence 67888866 8999999998887766543
Done!