Query 021275
Match_columns 315
No_of_seqs 285 out of 2127
Neff 7.9
Searched_HMMs 29240
Date Mon Mar 25 15:18:52 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021275.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/021275hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3lz8_A Putative chaperone DNAJ 100.0 1.5E-55 5E-60 411.0 17.4 242 1-309 31-283 (329)
2 1nlt_A Protein YDJ1, mitochond 100.0 2.8E-53 9.7E-58 381.8 23.1 209 100-309 8-216 (248)
3 3agx_A DNAJ homolog subfamily 100.0 3.6E-35 1.2E-39 251.9 15.7 143 104-309 3-145 (181)
4 2q2g_A HSP40 protein, heat sho 100.0 6.5E-33 2.2E-37 237.8 17.5 142 103-309 3-145 (180)
5 1c3g_A Heat shock protein 40; 100.0 4.4E-31 1.5E-35 224.4 15.6 138 104-309 1-139 (170)
6 1bq0_A DNAJ, HSP40; chaperone, 99.8 1.8E-22 6.2E-27 157.4 3.2 86 1-86 6-98 (103)
7 1hdj_A Human HSP40, HDJ-1; mol 99.8 3.7E-21 1.3E-25 142.0 3.6 65 1-65 6-73 (77)
8 2ctr_A DNAJ homolog subfamily 99.8 9.2E-21 3.1E-25 143.5 4.6 67 1-67 10-79 (88)
9 2och_A Hypothetical protein DN 99.8 6E-21 2E-25 139.4 3.0 62 1-62 11-73 (73)
10 2o37_A Protein SIS1; HSP40, J- 99.8 9.1E-21 3.1E-25 144.7 3.2 67 1-67 11-78 (92)
11 2ej7_A HCG3 gene; HCG3 protein 99.8 1.3E-20 4.5E-25 140.7 3.7 64 1-64 12-80 (82)
12 2ctt_A DNAJ homolog subfamily 99.8 2.4E-20 8.3E-25 145.5 4.6 101 104-211 2-103 (104)
13 2ctp_A DNAJ homolog subfamily 99.8 1.8E-20 6.1E-25 138.7 2.7 63 1-63 10-75 (78)
14 2dn9_A DNAJ homolog subfamily 99.8 1.9E-20 6.6E-25 138.8 2.5 63 1-63 10-76 (79)
15 2cug_A Mkiaa0962 protein; DNAJ 99.8 2.9E-20 1E-24 140.7 2.4 62 1-62 20-84 (88)
16 2dmx_A DNAJ homolog subfamily 99.8 3.2E-20 1.1E-24 141.7 2.1 66 1-66 12-82 (92)
17 2lgw_A DNAJ homolog subfamily 99.8 3.6E-20 1.2E-24 143.1 1.8 65 1-65 5-74 (99)
18 2ctw_A DNAJ homolog subfamily 99.8 1.3E-19 4.3E-24 142.6 2.9 65 1-65 20-88 (109)
19 2ctq_A DNAJ homolog subfamily 99.8 7.6E-20 2.6E-24 144.6 1.4 65 1-65 23-91 (112)
20 2yua_A Williams-beuren syndrom 99.8 2.6E-19 8.9E-24 138.4 3.6 59 1-59 20-82 (99)
21 1wjz_A 1700030A21RIK protein; 99.7 4.9E-19 1.7E-23 135.5 2.0 61 1-61 19-89 (94)
22 1faf_A Large T antigen; J doma 99.7 5E-19 1.7E-23 131.0 1.9 62 1-63 14-77 (79)
23 1gh6_A Large T antigen; tumor 99.7 1.8E-19 6.2E-24 142.4 -0.7 61 1-61 11-73 (114)
24 3apq_A DNAJ homolog subfamily 99.7 8.5E-19 2.9E-23 152.9 2.0 67 1-67 5-75 (210)
25 2pf4_E Small T antigen; PP2A, 99.7 3E-19 1E-23 150.6 -1.5 61 1-61 14-76 (174)
26 2qsa_A DNAJ homolog DNJ-2; J-d 99.7 1.1E-18 3.7E-23 137.3 0.4 62 1-62 18-87 (109)
27 2ys8_A RAB-related GTP-binding 99.7 1E-17 3.5E-22 127.1 3.2 55 1-55 30-87 (90)
28 2l6l_A DNAJ homolog subfamily 99.7 1.6E-17 5.4E-22 138.7 2.8 61 1-61 13-83 (155)
29 2guz_A Mitochondrial import in 99.6 3.7E-17 1.3E-21 118.5 3.0 54 1-54 17-71 (71)
30 1iur_A KIAA0730 protein; DNAJ 99.6 4.4E-17 1.5E-21 122.8 1.4 55 1-55 19-78 (88)
31 1xao_A YDJ1, mitochondrial pro 99.6 2E-15 6.7E-20 120.7 7.0 61 249-309 1-61 (121)
32 1nlt_A Protein YDJ1, mitochond 99.6 4E-15 1.4E-19 133.3 8.6 134 109-258 32-247 (248)
33 3i38_A Putative chaperone DNAJ 99.6 3.6E-15 1.2E-19 116.9 7.2 62 245-309 2-63 (109)
34 2qwo_B Putative tyrosine-prote 99.6 3.5E-16 1.2E-20 118.4 1.3 49 1-49 36-91 (92)
35 1fpo_A HSC20, chaperone protei 99.6 3.3E-16 1.1E-20 132.6 1.2 60 1-60 4-74 (171)
36 3hho_A CO-chaperone protein HS 99.6 4.6E-16 1.6E-20 132.1 1.5 59 1-59 7-76 (174)
37 3bvo_A CO-chaperone protein HS 99.5 6.4E-16 2.2E-20 134.5 1.3 58 1-58 46-114 (207)
38 3apo_A DNAJ homolog subfamily 99.5 3.9E-16 1.3E-20 160.8 -1.8 67 1-67 24-94 (780)
39 3ag7_A Putative uncharacterize 99.5 1.8E-15 6.2E-20 117.9 1.9 50 1-51 44-104 (106)
40 3uo3_A J-type CO-chaperone JAC 99.5 2.8E-15 9.6E-20 127.9 0.6 59 1-59 14-80 (181)
41 1exk_A DNAJ protein; extended 99.5 1E-13 3.5E-18 102.4 7.1 77 120-203 1-78 (79)
42 3i38_A Putative chaperone DNAJ 99.1 1.2E-11 4.2E-16 96.7 2.4 51 207-258 40-90 (109)
43 2guz_B Mitochondrial import in 99.0 1.1E-10 3.6E-15 82.4 3.6 48 1-48 7-57 (65)
44 1xao_A YDJ1, mitochondrial pro 99.0 1.2E-10 4E-15 92.9 3.2 52 206-257 35-91 (121)
45 3agx_A DNAJ homolog subfamily 98.7 3.6E-09 1.2E-13 90.1 3.5 51 206-256 121-173 (181)
46 2q2g_A HSP40 protein, heat sho 98.7 5.6E-09 1.9E-13 88.8 3.6 50 206-255 121-172 (180)
47 1c3g_A Heat shock protein 40; 98.7 3.3E-09 1.1E-13 89.4 1.7 49 206-254 115-165 (170)
48 3lz8_A Putative chaperone DNAJ 98.6 1.2E-08 4E-13 94.8 2.4 52 207-259 260-311 (329)
49 1n4c_A Auxilin; four helix bun 98.5 2.3E-08 7.8E-13 84.6 2.6 33 1-33 120-152 (182)
50 1exk_A DNAJ protein; extended 98.3 2.7E-07 9.2E-12 67.5 2.6 58 116-187 15-78 (79)
51 2ctt_A DNAJ homolog subfamily 98.3 3.2E-07 1.1E-11 70.8 3.0 58 116-187 32-95 (104)
52 3lcz_A YCZA, inhibitor of trap 97.7 6.6E-06 2.3E-10 55.2 0.7 30 172-203 8-37 (53)
53 3lcz_A YCZA, inhibitor of trap 97.5 5.6E-05 1.9E-09 50.6 3.0 14 173-186 23-36 (53)
54 2bx9_A Anti-trap, AT, tryptoph 97.4 0.0001 3.5E-09 49.4 3.0 25 131-157 10-34 (53)
55 3pmq_A Decaheme cytochrome C M 97.3 3.1E-06 1.1E-10 84.8 -7.0 50 107-156 168-221 (669)
56 2bx9_A Anti-trap, AT, tryptoph 96.9 0.00042 1.4E-08 46.3 2.3 27 147-186 10-36 (53)
57 2y4t_A DNAJ homolog subfamily 95.3 0.011 3.7E-07 54.8 3.9 34 1-34 385-418 (450)
58 3pmq_A Decaheme cytochrome C M 40.7 5.4 0.00018 39.9 -0.2 47 146-199 191-256 (669)
59 2qkd_A Zinc finger protein ZPR 40.7 40 0.0014 31.5 5.7 36 147-182 221-258 (404)
60 2bx2_L Ribonuclease E, RNAse E 40.7 6.3 0.00022 38.2 0.3 28 160-187 395-422 (517)
61 1ltl_A DNA replication initiat 39.9 51 0.0017 28.9 6.1 17 9-25 8-24 (279)
62 2kdx_A HYPA, hydrogenase/ureas 37.6 26 0.00088 26.6 3.3 40 117-156 59-100 (119)
63 1cf7_A Protein (transcription 37.4 23 0.0008 24.8 2.8 45 8-59 8-52 (76)
64 2qkd_A Zinc finger protein ZPR 36.6 36 0.0012 31.8 4.7 36 147-182 13-50 (404)
65 1uzc_A Hypothetical protein FL 36.4 32 0.0011 23.8 3.3 52 8-59 10-65 (71)
66 2cqn_A Formin-binding protein 35.7 15 0.00051 25.9 1.5 51 10-61 6-63 (77)
67 1ckt_A High mobility group 1 p 35.6 46 0.0016 22.2 4.1 42 17-58 14-56 (71)
68 1qo8_A Flavocytochrome C3 fuma 35.0 7.1 0.00024 37.9 -0.4 66 132-199 14-86 (566)
69 2vl6_A SSO MCM N-TER, minichro 31.7 1.9E+02 0.0067 24.7 8.6 14 14-27 9-22 (268)
70 2d7l_A WD repeat and HMG-box D 29.9 16 0.00055 25.8 0.9 44 16-59 17-60 (81)
71 3a43_A HYPD, hydrogenase nicke 29.3 47 0.0016 26.0 3.7 25 118-142 57-82 (139)
72 1y0p_A Fumarate reductase flav 29.2 8.3 0.00028 37.5 -1.0 65 132-198 13-88 (571)
73 3nyb_B Protein AIR2; polya RNA 29.2 24 0.00081 25.2 1.7 53 129-186 4-59 (83)
74 2b7e_A PRE-mRNA processing pro 28.6 25 0.00084 23.5 1.6 47 13-59 3-55 (59)
75 1i11_A Transcription factor SO 28.0 24 0.00082 24.5 1.6 42 16-58 16-57 (81)
76 1gmu_A UREE; metallochaperone; 27.6 1.2E+02 0.0041 23.7 5.8 46 259-305 16-61 (143)
77 1sif_A Ubiquitin; hydrophobic 27.5 43 0.0015 23.5 2.9 25 268-292 6-30 (88)
78 2vf7_A UVRA2, excinuclease ABC 27.3 26 0.00089 36.0 2.2 33 148-184 640-672 (842)
79 2jrp_A Putative cytoplasmic pr 27.2 1.2E+02 0.0041 21.5 5.1 24 131-154 3-26 (81)
80 1ear_A Urease accessory protei 26.5 1.3E+02 0.0044 23.7 5.8 47 258-305 20-66 (147)
81 1wz6_A HMG-box transcription f 26.4 29 0.001 24.1 1.8 42 16-58 19-60 (82)
82 1hry_A Human SRY; DNA, DNA-bin 26.2 30 0.001 23.6 1.8 42 16-58 16-57 (76)
83 1ny9_A Transcriptional activat 25.7 64 0.0022 25.0 3.9 53 5-61 71-124 (143)
84 3jt0_A Lamin-B1; structural ge 25.5 80 0.0027 24.9 4.4 38 268-306 51-88 (144)
85 3nm9_A HMG-D, high mobility gr 25.0 56 0.0019 22.0 3.0 38 16-57 15-52 (73)
86 4a3n_A Transcription factor SO 25.0 17 0.00057 24.5 0.2 42 16-58 14-55 (71)
87 2crj_A SWI/SNF-related matrix- 24.7 34 0.0012 24.5 1.9 42 16-58 19-60 (92)
88 1hme_A High mobility group pro 23.9 38 0.0013 23.1 2.0 42 16-58 18-59 (77)
89 1k99_A Upstream binding factor 23.8 46 0.0016 24.2 2.5 43 16-59 22-64 (99)
90 2r6f_A Excinuclease ABC subuni 23.8 41 0.0014 35.1 2.9 33 148-184 755-787 (972)
91 1z6h_A Biotin/lipoyl attachmen 22.3 1.7E+02 0.0057 19.0 5.3 28 273-300 36-64 (72)
92 2eqz_A High mobility group pro 22.1 41 0.0014 23.6 1.9 43 16-58 27-70 (86)
93 1v2y_A 3300001G02RIK protein; 22.0 65 0.0022 23.9 3.0 21 272-292 8-28 (105)
94 3vdz_A Ubiquitin-40S ribosomal 21.1 50 0.0017 24.4 2.3 38 254-291 15-55 (111)
95 1qyp_A RNA polymerase II; tran 20.3 1.1E+02 0.0036 19.7 3.5 16 148-163 17-32 (57)
No 1
>3lz8_A Putative chaperone DNAJ; structure genomics, structural genomics, PSI-2, protein STRU initiative; 2.90A {Klebsiella pneumoniae subsp} PDB: 2kqx_A
Probab=100.00 E-value=1.5e-55 Score=410.97 Aligned_cols=242 Identities=28% Similarity=0.406 Sum_probs=127.6
Q ss_pred CeeeCCCCCCCHHHHHHHHHHHHHHhCCCCCCCH---HHHHHHHHHHhhcCCCccccccccccccccccccCC-----CC
Q 021275 1 MRFSESRKNASQDDLKKAYRKAAIKNHPDKGGDP---EKFKELAQAYEVLSDPEKREIYDQYGEDALKEGMGG-----GG 72 (315)
Q Consensus 1 y~vLgv~~~a~~~~ik~ayr~la~~~hPd~~~~~---~~f~~i~~Ay~~L~d~~~R~~YD~~g~~~~~~g~~~-----~~ 72 (315)
|+||||+++||.+|||+|||+||++||||+++++ ++|++|++||++|+||.+|+.||+|+......++.+ ++
T Consensus 31 Y~vLgv~~~as~~eIk~aYr~la~~~HPDk~~~~~a~~~f~~i~~Ay~vL~d~~~R~~YD~~~~~~~~~~~~~~~~~~~~ 110 (329)
T 3lz8_A 31 YAILGVQPTDDLKTIKTAYRRLARKYHPDVSKENDAEAKFKDLAEAWEVLKDEQRRAEYDQLWQHRNDPGFGRQRQTHEQ 110 (329)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHcCcCCCCCHHHHHHHHHHHHHHHCCCCCCChHHHHHHHHHHHHHHHhhhhhhhcccchhhccccCCCcccccccccC
Confidence 8999999999999999999999999999998754 799999999999999999999999854432111110 01
Q ss_pred --CCCCCcccccCcccCCCCCCCCCCCCCcCCCcceeeeeeeeeeccccceeeEeeceeeEEccCCCCCCcccCCceecC
Q 021275 73 --GAHDPFDIFQSFFGGSPFGGGSSRGRRQRRGEDVIHPLKVSLEDLYNGTSKKLSLSRNVICTKCKGKGSKSGASMKCS 150 (315)
Q Consensus 73 --~~~~~~~~F~~~Fgg~~~~~~~~~~~~~~~~~d~~~~~~~~l~e~~~G~~~~~~~~~~~~C~~C~G~G~~~~~~~~C~ 150 (315)
+..+|.|+|++|||++++++ +.+.+.++.|+.+.+.|+|+|+|.|+++++.+.+.+.| |
T Consensus 111 ~f~~~~f~diF~~~Fg~~g~~~---~~~~~~~g~Dl~~~l~vsleea~~G~~k~i~i~~~v~~----g------------ 171 (329)
T 3lz8_A 111 SYSQQDFDDIFSSMFGQQAHQR---RRQHAARGHDLEIEVAVFLEETLAEQTRTISYNLPVYN----V------------ 171 (329)
T ss_dssp -----------------------------CCCCCCEEEEECCCTTGGGSCEEEEEEEEEEECC----S------------
T ss_pred CcCCCchhhhhHhhhcCcCCCC---CCCCcCCCCCEEEEEecchhhhhhccceEEEEEEEeec----C------------
Confidence 12357789999998532211 11234678999999999999999999999988865422 1
Q ss_pred CCcCCceEEEEEecCCcceeEeeeeCCCCCCCceEeCCCCCCCccCCceEEEEeEEEEEEecccccCCcEEEEcCCcCCC
Q 021275 151 GCQGSGMKVSIRHLGPSMIQQMQHPCNECKGTGETINDKDRCPQCKGEKVIQEKKVLEVIVEKGMQNGQKITFPGEADEA 230 (315)
Q Consensus 151 ~C~G~G~~~~~~~~~~g~~~~~~~~C~~C~G~G~~~~~~~~C~~C~G~g~~~~~~~~~v~Ip~G~~~G~~i~l~g~G~~~ 230 (315)
.| .+ .+...++++|+||||+++|++|+|+|+|++.
T Consensus 172 ----~G---------------------------~v--------------~~~~~~~l~V~IP~Gv~~G~~Irl~G~G~~g 206 (329)
T 3lz8_A 172 ----FG---------------------------MI--------------ESETPKTLNVKIPAGVVDGQRIRLKGQGTPG 206 (329)
T ss_dssp ----CC----------------------------C--------------CEEEEEEEEEEECTTCCTTCEEEESSCSCCC
T ss_pred ----Ce---------------------------EE--------------EEecceEEEEeCCCCCCCCCEEEEcccccCC
Confidence 12 11 1223568999999999999999999999987
Q ss_pred -CCCCccCEEEEEEEecCCCcEEeCCcEEEEEecCHHHHhCCCEEEEeCCCCCeEEEecCCCceeeCCcEEEEeCCCCcc
Q 021275 231 -PDTVTGDIVFVLQQKEHPKFKRKGDDLFVEHTLSLTEALCGFQFVITHLDGRQLLIKSQPGEVVKPGKYNWMDVSLNLS 309 (315)
Q Consensus 231 -~~~~~GDL~v~i~v~~~~~f~r~g~dL~~~~~I~l~~al~G~~~~v~tldG~~~~i~~~~~~v~~pg~~~~i~~~~~~~ 309 (315)
.++.+|||||+|+|+||+.|+|+|+||+++++|+|+|||+|++++|+||||+ +.|+||++ ++||++++|+|+|-+.
T Consensus 207 ~~gg~~GDL~v~I~v~~h~~F~R~G~DL~~~~~Isl~eAllG~~v~VptLdG~-v~l~ip~g--t~~g~~~rl~G~GmP~ 283 (329)
T 3lz8_A 207 ENGGPNGDLWLVIHIAPHPLFDIVGHNLEIVLPLAPWEAALGAKVTVPTLKES-ILLTVPPG--SQAGQRLRIKGKGLVS 283 (329)
T ss_dssp ---CCCCCEEEEECCCCCSSCEEETTEEEEEEEECHHHHHHCEEEEECCSSSC-EEEEECTT--CCTTCEEEETTCSCBC
T ss_pred CCCCCCCcEEEEEEEecCCccEEcCCcEEEEEECCHHHHcCCCeEEEECCCCC-EEEEECCC--CCCCCEEEEcCCCCCC
Confidence 4678999999999999999999999999999999999999999999999997 79999998 8999999999999874
No 2
>1nlt_A Protein YDJ1, mitochondrial protein import protein MAS5; beta-strands, chaperone, heat shock, mitochondrion; 2.70A {Saccharomyces cerevisiae} SCOP: b.4.1.1 b.4.1.1 g.54.1.1
Probab=100.00 E-value=2.8e-53 Score=381.81 Aligned_cols=209 Identities=44% Similarity=0.885 Sum_probs=200.5
Q ss_pred cCCCcceeeeeeeeeeccccceeeEeeceeeEEccCCCCCCcccCCceecCCCcCCceEEEEEecCCcceeEeeeeCCCC
Q 021275 100 QRRGEDVIHPLKVSLEDLYNGTSKKLSLSRNVICTKCKGKGSKSGASMKCSGCQGSGMKVSIRHLGPSMIQQMQHPCNEC 179 (315)
Q Consensus 100 ~~~~~d~~~~~~~~l~e~~~G~~~~~~~~~~~~C~~C~G~G~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~~C~~C 179 (315)
+.++.|+.+.+.|||+|+|.|+++++.+.+.+.|++|+|+|+..++..+|+.|+|+|+++..+++++ |+++++.+|+.|
T Consensus 8 ~~~g~d~~~~l~vslee~~~G~~k~i~~~r~~~C~~C~G~G~~~g~~~~C~~C~G~G~~~~~~~~g~-~~~~~~~~C~~C 86 (248)
T 1nlt_A 8 PQRGKDIKHEISASLEELYKGRTAKLALNKQILCKECEGRGGKKGAVKKCTSCNGQGIKFVTRQMGP-MIQRFQTECDVC 86 (248)
T ss_dssp CCBCCCEEEEEEECTTHHHHCEEEEEEEEEEEECTTTTTCSBSTTTCCCCTTSSSSSCEEEEEESSS-EEEEEECSCTTC
T ss_pred CCCCCCEEEEEEecHHHhcCCceEEEEeeEEEeCCCCcCccCCCCCCccCCCCCCCcEEEEEEecCc-eEEEEEEcCCCC
Confidence 3578999999999999999999999999999999999999998887788999999999999999999 888899999999
Q ss_pred CCCceEeCCCCCCCccCCceEEEEeEEEEEEecccccCCcEEEEcCCcCCCCCCCccCEEEEEEEecCCCcEEeCCcEEE
Q 021275 180 KGTGETINDKDRCPQCKGEKVIQEKKVLEVIVEKGMQNGQKITFPGEADEAPDTVTGDIVFVLQQKEHPKFKRKGDDLFV 259 (315)
Q Consensus 180 ~G~G~~~~~~~~C~~C~G~g~~~~~~~~~v~Ip~G~~~G~~i~l~g~G~~~~~~~~GDL~v~i~v~~~~~f~r~g~dL~~ 259 (315)
+|+|+++...++|+.|+|.|++.+.++++|+||||+++|++|+|+|+|++.+++.+|||||+|+++||+.|+|+|+|||+
T Consensus 87 ~G~G~~i~~~~~C~~C~G~g~~~~~~~l~V~Ip~G~~~G~~ir~~g~G~~~~~g~~GDl~v~i~v~~h~~F~R~G~DL~~ 166 (248)
T 1nlt_A 87 HGTGDIIDPKDRCKSCNGKKVENERKILEVHVEPGMKDGQRIVFKGEADQAPDVIPGDVVFIVSERPHKSFKRDGDDLVY 166 (248)
T ss_dssp SSSSSCCCTTSBCSSSTTSCEEEEEEEEEEEECTTCCTTCEEEETTCSCCCTTCBCCCEEEEEEECCCSSCEEETTEEEE
T ss_pred CCcCEEeccCCCCcccCCCceEeeeEEEEEEECCCccCCCEEEEeeeecCCCCCCcceEEEEEEEecCccceeeCCEEEE
Confidence 99999996669999999999999999999999999999999999999999888899999999999999999999999999
Q ss_pred EEecCHHHHhCCCEEEEeCCCCCeEEEecCCCceeeCCcEEEEeCCCCcc
Q 021275 260 EHTLSLTEALCGFQFVITHLDGRQLLIKSQPGEVVKPGKYNWMDVSLNLS 309 (315)
Q Consensus 260 ~~~I~l~~al~G~~~~v~tldG~~~~i~~~~~~v~~pg~~~~i~~~~~~~ 309 (315)
+++|||+|||+|++++|+||||+.+.|++|||+|++||++++|+|+|-+.
T Consensus 167 ~~~Isl~eAllG~~i~v~tldG~~~~i~ip~g~vt~~g~~~rl~g~Gmp~ 216 (248)
T 1nlt_A 167 EAEIDLLTAIAGGEFALEHVSGDWLKVGIVPGEVIAPGMRKVIEGKGMPI 216 (248)
T ss_dssp EEEEEHHHHHHCBCCEEECSSSCEEECCBCTTTTCSTTCEEEETTCSCBC
T ss_pred EEEeCHHHHhcCCEEEEeCCCCCEEEEEeCCCCeeCCCeEEEEcCCCCcc
Confidence 99999999999999999999998899999999999999999999999874
No 3
>3agx_A DNAJ homolog subfamily B member 1; chaperone; 1.85A {Homo sapiens} PDB: 3agy_A 3agz_A 2qld_A
Probab=100.00 E-value=3.6e-35 Score=251.94 Aligned_cols=143 Identities=37% Similarity=0.601 Sum_probs=124.6
Q ss_pred cceeeeeeeeeeccccceeeEeeceeeEEccCCCCCCcccCCceecCCCcCCceEEEEEecCCcceeEeeeeCCCCCCCc
Q 021275 104 EDVIHPLKVSLEDLYNGTSKKLSLSRNVICTKCKGKGSKSGASMKCSGCQGSGMKVSIRHLGPSMIQQMQHPCNECKGTG 183 (315)
Q Consensus 104 ~d~~~~~~~~l~e~~~G~~~~~~~~~~~~C~~C~G~G~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~~C~~C~G~G 183 (315)
+|+.+.+.+||+|+|.|+++++.+.+ +|+.|+|.
T Consensus 3 ~d~~~~l~islee~~~G~~k~i~i~~---------------------------------------------~c~~c~G~- 36 (181)
T 3agx_A 3 PPVTHDLRVSLEEIYSGCTKKMKISH---------------------------------------------KRLNPDGK- 36 (181)
T ss_dssp ---CEEEEECHHHHHHCEEEEEEEEE---------------------------------------------EEECTTSS-
T ss_pred CCEEEEEEEEHHHhcCCcEEEEEEec---------------------------------------------ccCCCCCc-
Confidence 57889999999999999999976542 12222222
Q ss_pred eEeCCCCCCCccCCceEEEEeEEEEEEecccccCCcEEEEcCCcCCCCCCCccCEEEEEEEecCCCcEEeCCcEEEEEec
Q 021275 184 ETINDKDRCPQCKGEKVIQEKKVLEVIVEKGMQNGQKITFPGEADEAPDTVTGDIVFVLQQKEHPKFKRKGDDLFVEHTL 263 (315)
Q Consensus 184 ~~~~~~~~C~~C~G~g~~~~~~~~~v~Ip~G~~~G~~i~l~g~G~~~~~~~~GDL~v~i~v~~~~~f~r~g~dL~~~~~I 263 (315)
|++.+.++++|+||||+++|++|+|+|+|++.+++.+|||||+|++++|+.|+|+|+||+++++|
T Consensus 37 ---------------g~~~~~~~l~V~Ip~G~~~G~~ir~~G~G~~~~~g~~GDl~v~i~~~~h~~F~R~G~DL~~~~~I 101 (181)
T 3agx_A 37 ---------------SIRNEDKILTIEVKKGWKEGTKITFPKEGDQTSNNIPADIVFVLKDKPHNIFKRDGSDVIYPARI 101 (181)
T ss_dssp ---------------CEEEEEEEEEEEECTTCCTTCEEEETTCSCCCSSSCCCCEEEEEEECCCSSCEEETTEEEEEEEE
T ss_pred ---------------eEEEEeEEEEEEECCCccCCcEEEEeeccccCCCCCcccEEEEEEEeccccceeeCCcEEEEEEc
Confidence 24456889999999999999999999999998888999999999999999999999999999999
Q ss_pred CHHHHhCCCEEEEeCCCCCeEEEecCCCceeeCCcEEEEeCCCCcc
Q 021275 264 SLTEALCGFQFVITHLDGRQLLIKSQPGEVVKPGKYNWMDVSLNLS 309 (315)
Q Consensus 264 ~l~~al~G~~~~v~tldG~~~~i~~~~~~v~~pg~~~~i~~~~~~~ 309 (315)
||++|++|++++|+||||+.+.|++|++ ++||++++|+|+|-+.
T Consensus 102 sl~eAllG~~i~v~tldG~~~~i~i~~~--t~~g~~~rl~g~Gmp~ 145 (181)
T 3agx_A 102 SLREALCGCTVNVPTLDGRTIPVVFKDV--IRPGMRRKVPGEGLPL 145 (181)
T ss_dssp EHHHHHHCEEEEEECTTSCEEEEEECSC--CCTTCEEEETTCSCBC
T ss_pred CHHHHhCCCEEEeECCCCCEEEEECCCc--cCCCcEEEECCcCCCc
Confidence 9999999999999999998889999876 9999999999999874
No 4
>2q2g_A HSP40 protein, heat shock 40 kDa protein, putative (fragment); malaria, structural genomics, structural genomics consortium, SGC; 1.90A {Cryptosporidium parvum iowa II}
Probab=100.00 E-value=6.5e-33 Score=237.77 Aligned_cols=142 Identities=35% Similarity=0.555 Sum_probs=130.5
Q ss_pred CcceeeeeeeeeeccccceeeEeeceeeEEccCCCCCCcccCCceecCCCcCCceEEEEEecCCcceeEeeeeCCCCCCC
Q 021275 103 GEDVIHPLKVSLEDLYNGTSKKLSLSRNVICTKCKGKGSKSGASMKCSGCQGSGMKVSIRHLGPSMIQQMQHPCNECKGT 182 (315)
Q Consensus 103 ~~d~~~~~~~~l~e~~~G~~~~~~~~~~~~C~~C~G~G~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~~C~~C~G~ 182 (315)
+.|+.+.+.+||+|+|.|+++++.+.+.+.|+.
T Consensus 3 g~d~~~~l~islee~~~G~~k~i~~~~~~~c~~----------------------------------------------- 35 (180)
T 2q2g_A 3 PRSHEVPLLVTLEELYLGKRKKIKVTRKRFIEH----------------------------------------------- 35 (180)
T ss_dssp -CEEEEEEEECHHHHHHCEEEEEEEEEEEEETT-----------------------------------------------
T ss_pred CCCEEEEEEeeHHHhcCCcEEEEEEeEEEecCC-----------------------------------------------
Confidence 679999999999999999999999998887741
Q ss_pred ceEeCCCCCCCccCCceEEEEeEEEEEEecccccCCcEEEEcCCcCC-CCCCCccCEEEEEEEecCCCcEEeCCcEEEEE
Q 021275 183 GETINDKDRCPQCKGEKVIQEKKVLEVIVEKGMQNGQKITFPGEADE-APDTVTGDIVFVLQQKEHPKFKRKGDDLFVEH 261 (315)
Q Consensus 183 G~~~~~~~~C~~C~G~g~~~~~~~~~v~Ip~G~~~G~~i~l~g~G~~-~~~~~~GDL~v~i~v~~~~~f~r~g~dL~~~~ 261 (315)
|++.+.++++|+||||+++|++|+|+|+|++ .+++.+|||||+|++++|+.|+|+|+||++++
T Consensus 36 ----------------g~~~~~~~l~V~Ip~G~~~G~~ir~~g~G~~g~~gg~~GDl~v~i~~~~h~~F~R~G~DL~~~~ 99 (180)
T 2q2g_A 36 ----------------KVRNEENIVEVEIKPGWKDGTKLTYSGEGDQESPGTSPGDLVLIIQTKTHPRFTRDDCHLIMKV 99 (180)
T ss_dssp ----------------EEEEEEEEEEEEECTTCCTTCEEEETTCSCCSSTTSCCCEEEEEEEECCCSSCEEETTEEEEEE
T ss_pred ----------------ceEEeeEEEEEEECCCCcCCcEEEEeeccCCCCCCCccccEEEEEEEEecccEEEcCCEEEEEE
Confidence 1345578899999999999999999999999 58889999999999999999999999999999
Q ss_pred ecCHHHHhCCCEEEEeCCCCCeEEEecCCCceeeCCcEEEEeCCCCcc
Q 021275 262 TLSLTEALCGFQFVITHLDGRQLLIKSQPGEVVKPGKYNWMDVSLNLS 309 (315)
Q Consensus 262 ~I~l~~al~G~~~~v~tldG~~~~i~~~~~~v~~pg~~~~i~~~~~~~ 309 (315)
+|||+||++|++++|+||||+.+.|++|++ ++||++++|+|+|-+.
T Consensus 100 ~Isl~eAllG~~i~v~tldG~~v~i~ip~~--t~~g~~~rl~g~Gmp~ 145 (180)
T 2q2g_A 100 TIPLVRALTGFTCPVTTLDNRNLQIPIKEI--VNPKTRKIVPNEGMPI 145 (180)
T ss_dssp EEEHHHHHHCEEEEEECTTCCEEEEEECSC--CCTTCEEEETTCSCBC
T ss_pred EcCHHHHhCCCEEEeeCCCCCEEEEECCCc--cCCCEEEEECCcCCCc
Confidence 999999999999999999998889999876 9999999999999774
No 5
>1c3g_A Heat shock protein 40; beta sheets, short helices, chaperone; 2.70A {Saccharomyces cerevisiae} SCOP: b.4.1.1 b.4.1.1 PDB: 2b26_A
Probab=99.97 E-value=4.4e-31 Score=224.41 Aligned_cols=138 Identities=34% Similarity=0.507 Sum_probs=124.2
Q ss_pred cceeeeeeeeeeccccceeeEeeceeeEEccCCCCCCcccCCceecCCCcCCceEEEEEecCCcceeEeeeeCCCCCCCc
Q 021275 104 EDVIHPLKVSLEDLYNGTSKKLSLSRNVICTKCKGKGSKSGASMKCSGCQGSGMKVSIRHLGPSMIQQMQHPCNECKGTG 183 (315)
Q Consensus 104 ~d~~~~~~~~l~e~~~G~~~~~~~~~~~~C~~C~G~G~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~~C~~C~G~G 183 (315)
+|+.+.+.+||+|+|.|+++++.+.+.. + .|
T Consensus 1 ~d~~~~l~islee~~~G~~k~i~~~~~~----~------------------~G--------------------------- 31 (170)
T 1c3g_A 1 ETVQVNLPVSLEDLFVGKKKSFKIGRKG----P------------------HG--------------------------- 31 (170)
T ss_dssp CEEEEEEEECHHHHHHTCEEEEEEEEEE----T------------------TT---------------------------
T ss_pred CCEEEEEEeEHHHhhCCcEEEEEEEEec----C------------------CC---------------------------
Confidence 3788999999999999999999887541 0 11
Q ss_pred eEeCCCCCCCccCCceEEEEeEEEEEEecccccCCcEEEEcCCcCCC-CCCCccCEEEEEEEecCCCcEEeCCcEEEEEe
Q 021275 184 ETINDKDRCPQCKGEKVIQEKKVLEVIVEKGMQNGQKITFPGEADEA-PDTVTGDIVFVLQQKEHPKFKRKGDDLFVEHT 262 (315)
Q Consensus 184 ~~~~~~~~C~~C~G~g~~~~~~~~~v~Ip~G~~~G~~i~l~g~G~~~-~~~~~GDL~v~i~v~~~~~f~r~g~dL~~~~~ 262 (315)
.+ +.++++|+||||+++|++|+|+|+|++. +++.+|||||+|++++|+.|+|+|+||+++++
T Consensus 32 ----------------~~-~~~~l~V~Ip~G~~~G~~ir~~g~G~~~~~gg~~GDl~v~i~v~~h~~F~R~G~DL~~~~~ 94 (170)
T 1c3g_A 32 ----------------AS-EKTQIDIQLKPGWKAGTKITYKNQGDYNPQTGRRKTLQFVIQEKSHPNFKRDGDDLIYTLP 94 (170)
T ss_dssp ----------------EE-EEEEEEEECCTTCCTTCEEEESSCSSBCSSSSCBCEEEEEEEECCCSSEEEETTEEEEEEC
T ss_pred ----------------cE-EeEEEEEEeCCCccCCCEEEEeccccCCCCCCccccEEEEEEEccCCccEEeCCcEeEEEE
Confidence 22 4688999999999999999999999954 78899999999999999999999999999999
Q ss_pred cCHHHHhCCCEEEEeCCCCCeEEEecCCCceeeCCcEEEEeCCCCcc
Q 021275 263 LSLTEALCGFQFVITHLDGRQLLIKSQPGEVVKPGKYNWMDVSLNLS 309 (315)
Q Consensus 263 I~l~~al~G~~~~v~tldG~~~~i~~~~~~v~~pg~~~~i~~~~~~~ 309 (315)
|||++|++|++++|+||||+.+.|++|++ ++||++++|+|+|-+.
T Consensus 95 Isl~eAllG~~~~v~tldG~~~~i~i~~~--t~~g~~~rl~g~G~p~ 139 (170)
T 1c3g_A 95 LSFKESLLGFSKTIQTIDGRTLPLSRVQP--VQPSQTSTYPGQGMPT 139 (170)
T ss_dssp CBHHHHHHCEEEEEECSSSCEEEEEESSC--CCTTCEEECTTCSCBC
T ss_pred cCHHHHhCCCeEEeeCCCCCEEEEECCCc--cCCCcEEEEeCCCCCc
Confidence 99999999999999999998889999877 9999999999999874
No 6
>1bq0_A DNAJ, HSP40; chaperone, heat shock, protein folding, DNAK; NMR {Escherichia coli} SCOP: a.2.3.1 PDB: 1xbl_A 1bqz_A
Probab=99.85 E-value=1.8e-22 Score=157.39 Aligned_cols=86 Identities=45% Similarity=0.792 Sum_probs=62.6
Q ss_pred CeeeCCCCCCCHHHHHHHHHHHHHHhCCCCCCCH----HHHHHHHHHHhhcCCCccccccccccccccccccCCCC---C
Q 021275 1 MRFSESRKNASQDDLKKAYRKAAIKNHPDKGGDP----EKFKELAQAYEVLSDPEKREIYDQYGEDALKEGMGGGG---G 73 (315)
Q Consensus 1 y~vLgv~~~a~~~~ik~ayr~la~~~hPd~~~~~----~~f~~i~~Ay~~L~d~~~R~~YD~~g~~~~~~g~~~~~---~ 73 (315)
|+||||+++||.++||+|||+|+++||||++++. ++|++|++||++|+||.+|+.||++|++++..+..+++ +
T Consensus 6 y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~YD~~~~~~~~~~~~~~~~~~~ 85 (103)
T 1bq0_A 6 YEILGVSKTAEEREIRKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYEVLTDSQKRAAYDQYGHAAFEQGGMGGGGFGG 85 (103)
T ss_dssp TTTTSSCSSCCHHHHHHHHHHHHTTTCTTTCTTTCTHHHHHHHHTTTTTSTTCSHHHHHTTTSTTTSSCSCC--------
T ss_pred HHHcCcCCCCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHHCCHHHHHHHHHHhhhhhcccCcCCCCCCC
Confidence 8999999999999999999999999999998742 79999999999999999999999999988764321111 1
Q ss_pred CCCCcccccCccc
Q 021275 74 AHDPFDIFQSFFG 86 (315)
Q Consensus 74 ~~~~~~~F~~~Fg 86 (315)
..++.++|+++|+
T Consensus 86 ~~~~~~~f~~~f~ 98 (103)
T 1bq0_A 86 GADFSDIFGDVFG 98 (103)
T ss_dssp -------------
T ss_pred CCCHHHHHHHHHH
Confidence 1245567777775
No 7
>1hdj_A Human HSP40, HDJ-1; molecular chaperone; NMR {Homo sapiens} SCOP: a.2.3.1
Probab=99.82 E-value=3.7e-21 Score=142.03 Aligned_cols=65 Identities=54% Similarity=0.969 Sum_probs=61.3
Q ss_pred CeeeCCCCCCCHHHHHHHHHHHHHHhCCCCCCCH---HHHHHHHHHHhhcCCCccccccccccccccc
Q 021275 1 MRFSESRKNASQDDLKKAYRKAAIKNHPDKGGDP---EKFKELAQAYEVLSDPEKREIYDQYGEDALK 65 (315)
Q Consensus 1 y~vLgv~~~a~~~~ik~ayr~la~~~hPd~~~~~---~~f~~i~~Ay~~L~d~~~R~~YD~~g~~~~~ 65 (315)
|+||||+++||.++||+|||+|++++|||+++++ +.|++|++||++|+||.+|+.||++|.+++.
T Consensus 6 y~iLgv~~~as~~~Ik~ayr~l~~~~HPD~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~~~ 73 (77)
T 1hdj_A 6 YQTLGLARGASDEEIKRAYRRQALRYHPDKNKEPGAEEKFKEIAEAYDVLSDPRKREIFDRYGEEGLK 73 (77)
T ss_dssp HHHHTCCTTCCHHHHHHHHHHHHHTTCTTTCCCTTHHHHHHHHHHHHHHTTCHHHHHHHHHTCGGGCC
T ss_pred HHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCccHHHHHHHHHHHHHHHCCHHHHHHHHHHcccccc
Confidence 7899999999999999999999999999998754 8999999999999999999999999988765
No 8
>2ctr_A DNAJ homolog subfamily B member 9; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.81 E-value=9.2e-21 Score=143.50 Aligned_cols=67 Identities=45% Similarity=0.737 Sum_probs=62.7
Q ss_pred CeeeCCCCCCCHHHHHHHHHHHHHHhCCCCCCCH---HHHHHHHHHHhhcCCCccccccccccccccccc
Q 021275 1 MRFSESRKNASQDDLKKAYRKAAIKNHPDKGGDP---EKFKELAQAYEVLSDPEKREIYDQYGEDALKEG 67 (315)
Q Consensus 1 y~vLgv~~~a~~~~ik~ayr~la~~~hPd~~~~~---~~f~~i~~Ay~~L~d~~~R~~YD~~g~~~~~~g 67 (315)
|+||||+++|+.+|||+|||+|+++||||+++++ ++|++|++||++|+||.+|+.||.+|+.++..+
T Consensus 10 y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~a~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~~~~~ 79 (88)
T 2ctr_A 10 YDILGVPKSASERQIKKAFHKLAMKYHPDKNKSPDAEAKFREIAEAYETLSDANRRKEYDTLGHSAFTSG 79 (88)
T ss_dssp HHHHTCCTTCCHHHHHHHHHHHHHHTCTTTCCSHHHHHHHHHHHHHHHHHHSSHHHHHHHHTCHHHHTCS
T ss_pred HHHcCcCCCCCHHHHHHHHHHHHHHHCcCCCCChHHHHHHHHHHHHHHHHCCHHHHHHHHHhCccccccC
Confidence 7899999999999999999999999999999875 799999999999999999999999998877643
No 9
>2och_A Hypothetical protein DNJ-12; HSP40, J-domain, chaperone, APC90013.2, structural genomics, protein structure initiative; 1.86A {Caenorhabditis elegans} PDB: 2lo1_A
Probab=99.81 E-value=6e-21 Score=139.45 Aligned_cols=62 Identities=56% Similarity=0.844 Sum_probs=57.8
Q ss_pred CeeeCCCCCCCHHHHHHHHHHHHHHhCCCCCCCH-HHHHHHHHHHhhcCCCcccccccccccc
Q 021275 1 MRFSESRKNASQDDLKKAYRKAAIKNHPDKGGDP-EKFKELAQAYEVLSDPEKREIYDQYGED 62 (315)
Q Consensus 1 y~vLgv~~~a~~~~ik~ayr~la~~~hPd~~~~~-~~f~~i~~Ay~~L~d~~~R~~YD~~g~~ 62 (315)
|+||||+++|+.++||+|||+|+++||||++++. +.|++|++||++|+||.+|+.||++|++
T Consensus 11 y~iLgl~~~a~~~eIk~ayr~l~~~~HPD~~~~~~~~f~~i~~Ay~~L~d~~~R~~YD~~g~~ 73 (73)
T 2och_A 11 YDVLGVKPDASDNELKKAYRKMALKFHPDKNPDGAEQFKQISQAYEVLSDEKKRQIYDQGGEE 73 (73)
T ss_dssp HHHHTCCTTCCHHHHHHHHHHHHHHTCTTTCTTCHHHHHHHHHHHHHHTSHHHHHHHHHTC--
T ss_pred HHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCcCHHHHHHHHHHHHHHHCCHHHHHHHHhcCCC
Confidence 7899999999999999999999999999999864 8999999999999999999999999863
No 10
>2o37_A Protein SIS1; HSP40, J-domain, cochaperone, APC90055.5, structural genomics, PSI-2, protein structure initiative; 1.25A {Saccharomyces cerevisiae}
Probab=99.80 E-value=9.1e-21 Score=144.70 Aligned_cols=67 Identities=52% Similarity=0.877 Sum_probs=62.6
Q ss_pred CeeeCCCCCCCHHHHHHHHHHHHHHhCCCCCCC-HHHHHHHHHHHhhcCCCccccccccccccccccc
Q 021275 1 MRFSESRKNASQDDLKKAYRKAAIKNHPDKGGD-PEKFKELAQAYEVLSDPEKREIYDQYGEDALKEG 67 (315)
Q Consensus 1 y~vLgv~~~a~~~~ik~ayr~la~~~hPd~~~~-~~~f~~i~~Ay~~L~d~~~R~~YD~~g~~~~~~g 67 (315)
|+||||+++|+.++||+|||+|+++||||+++. .++|++|++||++|+||.+|+.||+++++++..+
T Consensus 11 y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~~f~~i~~Ay~~L~d~~~R~~YD~~~~~~~~~~ 78 (92)
T 2o37_A 11 YDLLGVSPSANEQELKKGYRKAALKYHPDKPTGDTEKFKEISEAFEILNDPQKREIYDQYGLEAARSG 78 (92)
T ss_dssp HHHHTCCTTCCHHHHHHHHHHHHHHHCTTSTTCCHHHHHHHHHHHHHHTSHHHHHHHHHHCHHHHHTT
T ss_pred HHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCChHHHHHHHHHHHHHHCCHHHHHHHHHHCHHHhhcc
Confidence 789999999999999999999999999999864 4899999999999999999999999999887643
No 11
>2ej7_A HCG3 gene; HCG3 protein, DNAJ domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.80 E-value=1.3e-20 Score=140.69 Aligned_cols=64 Identities=48% Similarity=0.805 Sum_probs=59.7
Q ss_pred CeeeCCCCCCCHHHHHHHHHHHHHHhCCCCCCCH-----HHHHHHHHHHhhcCCCcccccccccccccc
Q 021275 1 MRFSESRKNASQDDLKKAYRKAAIKNHPDKGGDP-----EKFKELAQAYEVLSDPEKREIYDQYGEDAL 64 (315)
Q Consensus 1 y~vLgv~~~a~~~~ik~ayr~la~~~hPd~~~~~-----~~f~~i~~Ay~~L~d~~~R~~YD~~g~~~~ 64 (315)
|+||||+++|+.++||+|||+|+++||||+++.. ++|++|++||++|+||.+|+.||++|+.++
T Consensus 12 y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~YD~~g~~~~ 80 (82)
T 2ej7_A 12 YEVLDVPRQASSEAIKKAYRKLALKWHPDKNPENKEEAERRFKQVAEAYEVLSDAKKRDIYDRYGSGPS 80 (82)
T ss_dssp HHHTTCCTTCCHHHHHHHHHHHHTTSCTTTCSTTHHHHHHHHHHHHHHHHHHSSTTHHHHHHHTCCCSC
T ss_pred HHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHHHCCHHHHHHHHHcCcccc
Confidence 7899999999999999999999999999999863 689999999999999999999999997654
No 12
>2ctt_A DNAJ homolog subfamily A member 3; ZING finger, beta-hairpin, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.80 E-value=2.4e-20 Score=145.55 Aligned_cols=101 Identities=27% Similarity=0.589 Sum_probs=88.1
Q ss_pred cceeeeeeeeeeccccceeeEeeceeeEEccCCCCCCcccCC-ceecCCCcCCceEEEEEecCCcceeEeeeeCCCCCCC
Q 021275 104 EDVIHPLKVSLEDLYNGTSKKLSLSRNVICTKCKGKGSKSGA-SMKCSGCQGSGMKVSIRHLGPSMIQQMQHPCNECKGT 182 (315)
Q Consensus 104 ~d~~~~~~~~l~e~~~G~~~~~~~~~~~~C~~C~G~G~~~~~-~~~C~~C~G~G~~~~~~~~~~g~~~~~~~~C~~C~G~ 182 (315)
.++.+.|.|+|+|+|+|..+++.+.+.+.|+.|+|+|...+. ..+|+.|+|+|++...+ |+ ++ .+.+|+.|+|+
T Consensus 2 ~~~~~~l~vslee~~~G~~~~i~~~~~~~C~~C~G~G~~~g~~~~~C~~C~G~G~~~~~~--G~--~~-~~~~C~~C~G~ 76 (104)
T 2ctt_A 2 SSGSSGMELTFNQAAKGVNKEFTVNIMDTCERCNGKGNEPGTKVQHCHYCGGSGMETINT--GP--FV-MRSTCRRCGGR 76 (104)
T ss_dssp CCCCCCCCCCCSSCCSSSCTTCCSSCCEECSSSSSSSSCTTCCCEECSSSSSSCEEEEEE--TT--EE-EEEECSSSSSS
T ss_pred CceEEEEEEEHHHHcCCCEEEEEeeeeeECCCCcCCccCCCCCCccCCCCCCCEEEEEEe--CC--EE-EEEECCcCCCc
Confidence 467889999999999999999999999999999999998876 47899999999765543 43 33 57899999999
Q ss_pred ceEeCCCCCCCccCCceEEEEeEEEEEEe
Q 021275 183 GETINDKDRCPQCKGEKVIQEKKVLEVIV 211 (315)
Q Consensus 183 G~~~~~~~~C~~C~G~g~~~~~~~~~v~I 211 (315)
|+++. ++|+.|+|.|++.+.++|+|+|
T Consensus 77 G~~i~--~~C~~C~G~G~v~~~k~l~V~~ 103 (104)
T 2ctt_A 77 GSIII--SPCVVCRGAGQAKQKKRSGPSS 103 (104)
T ss_dssp SEECS--SCCSSSSSCSEECCCCSSCCSC
T ss_pred ceECC--CcCCCCCCeeEEEEEEEEEEEc
Confidence 99987 9999999999999888877754
No 13
>2ctp_A DNAJ homolog subfamily B member 12; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.79 E-value=1.8e-20 Score=138.67 Aligned_cols=63 Identities=51% Similarity=0.834 Sum_probs=59.4
Q ss_pred CeeeCCCCCCCHHHHHHHHHHHHHHhCCCCCCCH---HHHHHHHHHHhhcCCCccccccccccccc
Q 021275 1 MRFSESRKNASQDDLKKAYRKAAIKNHPDKGGDP---EKFKELAQAYEVLSDPEKREIYDQYGEDA 63 (315)
Q Consensus 1 y~vLgv~~~a~~~~ik~ayr~la~~~hPd~~~~~---~~f~~i~~Ay~~L~d~~~R~~YD~~g~~~ 63 (315)
|+||||+++|+.++||+|||+|+++||||+++.+ ++|++|++||++|+||.+|+.||++|+.+
T Consensus 10 y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~~~~f~~i~~Ay~~L~d~~~R~~YD~~~~~~ 75 (78)
T 2ctp_A 10 YEILGVSRGASDEDLKKAYRRLALKFHPDKNHAPGATEAFKAIGTAYAVLSNPEKRKQYDQFGSGP 75 (78)
T ss_dssp HHHHTCCTTCCHHHHHHHHHHHHTTSCTTTCSSHHHHHHHHHHHHHHHHHTSHHHHHHHHHTCSCS
T ss_pred HHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCccHHHHHHHHHHHHHHHCCHHHHHHHHHcCccc
Confidence 7899999999999999999999999999999765 89999999999999999999999998754
No 14
>2dn9_A DNAJ homolog subfamily A member 3; J-domain, TID1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.79 E-value=1.9e-20 Score=138.82 Aligned_cols=63 Identities=51% Similarity=0.741 Sum_probs=58.8
Q ss_pred CeeeCCCCCCCHHHHHHHHHHHHHHhCCCCCCCH----HHHHHHHHHHhhcCCCccccccccccccc
Q 021275 1 MRFSESRKNASQDDLKKAYRKAAIKNHPDKGGDP----EKFKELAQAYEVLSDPEKREIYDQYGEDA 63 (315)
Q Consensus 1 y~vLgv~~~a~~~~ik~ayr~la~~~hPd~~~~~----~~f~~i~~Ay~~L~d~~~R~~YD~~g~~~ 63 (315)
|+||||+++|+.++||+|||+|+++||||++++. ++|++|++||++|+||.+|+.||++|..+
T Consensus 10 y~iLgv~~~a~~~~Ik~ayr~l~~~~HPD~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~YD~~g~~~ 76 (79)
T 2dn9_A 10 YQILGVPRNASQKEIKKAYYQLAKKYHPDTNKDDPKAKEKFSQLAEAYEVLSDEVKRKQYDAYGSGP 76 (79)
T ss_dssp HHHHTCCTTCCHHHHHHHHHHHHHHTCTTTCSSCTTHHHHHHHHHHHHHHHHSHHHHHHHHHSCCCC
T ss_pred HHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHhccCcC
Confidence 7899999999999999999999999999998742 89999999999999999999999998653
No 15
>2cug_A Mkiaa0962 protein; DNAJ-like domain, structural genomics, molecular chaperone, NPPSFA; NMR {Mus musculus}
Probab=99.78 E-value=2.9e-20 Score=140.71 Aligned_cols=62 Identities=48% Similarity=0.803 Sum_probs=58.7
Q ss_pred CeeeCCCCCCCHHHHHHHHHHHHHHhCCCCCCCH---HHHHHHHHHHhhcCCCcccccccccccc
Q 021275 1 MRFSESRKNASQDDLKKAYRKAAIKNHPDKGGDP---EKFKELAQAYEVLSDPEKREIYDQYGED 62 (315)
Q Consensus 1 y~vLgv~~~a~~~~ik~ayr~la~~~hPd~~~~~---~~f~~i~~Ay~~L~d~~~R~~YD~~g~~ 62 (315)
|+||||+++|+.++||+|||+|+++||||+++++ ++|++|++||++|+||.+|+.||++|+.
T Consensus 20 y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~~~~f~~i~~Ay~~L~d~~~R~~YD~~g~~ 84 (88)
T 2cug_A 20 YRVLGVSRTASQADIKKAYKKLAREWHPDKNKDPGAEDRFIQISKAYEILSNEEKRTNYDHYGSG 84 (88)
T ss_dssp HHHHTCCTTCCHHHHHHHHHHHHHHSCTTTCCSTTHHHHHHHHHHHHHHHHSHHHHHHHHHHTTC
T ss_pred HHHcCcCCCCCHHHHHHHHHHHHHHHCcCCCCChhHHHHHHHHHHHHHHHCCHHHHHHHHHcCCC
Confidence 7899999999999999999999999999998754 8999999999999999999999999864
No 16
>2dmx_A DNAJ homolog subfamily B member 8; DNAJ J domain, helix-turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.78 E-value=3.2e-20 Score=141.68 Aligned_cols=66 Identities=47% Similarity=0.732 Sum_probs=61.2
Q ss_pred CeeeCCCCCCCHHHHHHHHHHHHHHhCCCCCCCH-----HHHHHHHHHHhhcCCCcccccccccccccccc
Q 021275 1 MRFSESRKNASQDDLKKAYRKAAIKNHPDKGGDP-----EKFKELAQAYEVLSDPEKREIYDQYGEDALKE 66 (315)
Q Consensus 1 y~vLgv~~~a~~~~ik~ayr~la~~~hPd~~~~~-----~~f~~i~~Ay~~L~d~~~R~~YD~~g~~~~~~ 66 (315)
|+||||+++|+.++||+|||+|+++||||+++.. ++|++|++||++|+||.+|+.||++|..++..
T Consensus 12 y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~~~~ 82 (92)
T 2dmx_A 12 YEVLGVQASASPEDIKKAYRKLALRWHPDKNPDNKEEAEKKFKLVSEAYEVLSDSKKRSLYDRAGCDSWRA 82 (92)
T ss_dssp HHHHTCCTTCCTTHHHHHHHHHHHHTCTTTCSSCSHHHHHHHHHHHHHHHHHHSHHHHHHHHHHCSCSSCC
T ss_pred HHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCCccHHHHHHHHHHHHHHHHHHCCHHHHHHHHHhCcccccC
Confidence 7899999999999999999999999999998752 79999999999999999999999999876653
No 17
>2lgw_A DNAJ homolog subfamily B member 2; J domain, HSJ1A, CO-chaperon, chaperone; NMR {Homo sapiens}
Probab=99.77 E-value=3.6e-20 Score=143.13 Aligned_cols=65 Identities=55% Similarity=0.894 Sum_probs=59.1
Q ss_pred CeeeCCCCCCCHHHHHHHHHHHHHHhCCCCCCCH-----HHHHHHHHHHhhcCCCccccccccccccccc
Q 021275 1 MRFSESRKNASQDDLKKAYRKAAIKNHPDKGGDP-----EKFKELAQAYEVLSDPEKREIYDQYGEDALK 65 (315)
Q Consensus 1 y~vLgv~~~a~~~~ik~ayr~la~~~hPd~~~~~-----~~f~~i~~Ay~~L~d~~~R~~YD~~g~~~~~ 65 (315)
|+||||+++|+.+|||+|||+|+++||||++++. ++|++|++||++|+||.+|+.||++|.+++.
T Consensus 5 Y~iLgv~~~as~~eIk~aYr~la~~~HPDk~~~~~~~a~~~f~~I~~AY~vL~d~~~R~~YD~~g~~~~~ 74 (99)
T 2lgw_A 5 YEILDVPRSASADDIKKAYRRKALQWHPDKNPDNKEFAEKKFKEVAEAYEVLSDKHKREIYDRYGREGLT 74 (99)
T ss_dssp HHHSSSCTTSCHHHHHHHHHHHHHHTSTTTCCSCCHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHC---
T ss_pred HHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCccHHHHHHHHHHHHHHHHHHCCHHHHHHHHHhCccccc
Confidence 7899999999999999999999999999998753 7999999999999999999999999987765
No 18
>2ctw_A DNAJ homolog subfamily C member 5; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.76 E-value=1.3e-19 Score=142.61 Aligned_cols=65 Identities=49% Similarity=0.765 Sum_probs=60.9
Q ss_pred CeeeCCCCCCCHHHHHHHHHHHHHHhCCCCCCC----HHHHHHHHHHHhhcCCCccccccccccccccc
Q 021275 1 MRFSESRKNASQDDLKKAYRKAAIKNHPDKGGD----PEKFKELAQAYEVLSDPEKREIYDQYGEDALK 65 (315)
Q Consensus 1 y~vLgv~~~a~~~~ik~ayr~la~~~hPd~~~~----~~~f~~i~~Ay~~L~d~~~R~~YD~~g~~~~~ 65 (315)
|+||||+++|+.++||+|||+|++++|||++++ .++|++|++||++|+||.+|+.||++|..++.
T Consensus 20 Y~vLgv~~~as~~eIk~aYr~la~~~HPDk~~~~~~a~~~f~~i~~Ay~vL~d~~~R~~YD~~g~~~~~ 88 (109)
T 2ctw_A 20 YHVLGLDKNATSDDIKKSYRKLALKYHPDKNPDNPEAADKFKEINNAHAILTDATKRNIYDKYGSLGLY 88 (109)
T ss_dssp HHHHTCCTTCCHHHHHHHHHHHHHHSCTTTSTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHTCHHHHH
T ss_pred HHHcCcCCCCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHHcCHHHHHHHHHhcccccc
Confidence 789999999999999999999999999999985 27999999999999999999999999987764
No 19
>2ctq_A DNAJ homolog subfamily C member 12; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.76 E-value=7.6e-20 Score=144.60 Aligned_cols=65 Identities=25% Similarity=0.469 Sum_probs=60.6
Q ss_pred CeeeCCCCCCCHHHHHHHHHHHHHHhCCCCCCC----HHHHHHHHHHHhhcCCCccccccccccccccc
Q 021275 1 MRFSESRKNASQDDLKKAYRKAAIKNHPDKGGD----PEKFKELAQAYEVLSDPEKREIYDQYGEDALK 65 (315)
Q Consensus 1 y~vLgv~~~a~~~~ik~ayr~la~~~hPd~~~~----~~~f~~i~~Ay~~L~d~~~R~~YD~~g~~~~~ 65 (315)
|+||||+++|+.++||+|||+|+++||||++++ .++|++|++||++|+||.+|+.||+++..++.
T Consensus 23 Y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~a~~~f~~i~~Ay~vL~d~~~R~~YD~~~~~~~~ 91 (112)
T 2ctq_A 23 YTLLGCDELSSVEQILAEFKVRALECHPDKHPENPKAVETFQKLQKAKEILTNEESRARYDHWRRSQMS 91 (112)
T ss_dssp HHHTTCCTTSCHHHHHHHHHHHHHTTCTTTCTTCSTHHHHHHHHHHHHHHHHSHHHHHHHHHHHHHTCS
T ss_pred HHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHHCCHHHHHHHHHhhhhccC
Confidence 789999999999999999999999999999974 28999999999999999999999999987654
No 20
>2yua_A Williams-beuren syndrome chromosome region 18 protein; J domain, all helix protein, chaperone, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.75 E-value=2.6e-19 Score=138.45 Aligned_cols=59 Identities=31% Similarity=0.505 Sum_probs=55.8
Q ss_pred CeeeCCCCCCCHHHHHHHHHHHHHHhCCCCCCC----HHHHHHHHHHHhhcCCCccccccccc
Q 021275 1 MRFSESRKNASQDDLKKAYRKAAIKNHPDKGGD----PEKFKELAQAYEVLSDPEKREIYDQY 59 (315)
Q Consensus 1 y~vLgv~~~a~~~~ik~ayr~la~~~hPd~~~~----~~~f~~i~~Ay~~L~d~~~R~~YD~~ 59 (315)
|+||||+++|+.++||+|||+|+++||||++++ .++|++|++||++|+||.+|+.||++
T Consensus 20 Y~vLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~YD~~ 82 (99)
T 2yua_A 20 YDLLGVPSTATQAQIKAAYYRQCFLYHPDRNSGSAEAAERFTRISQAYVVLGSATLRRKYDRG 82 (99)
T ss_dssp HHHHTCCTTCCHHHHHHHHHHHHHHSCTTTCSSCSHHHHHHHHHHHHHHHTTSHHHHHHHHHT
T ss_pred HHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHh
Confidence 789999999999999999999999999999874 27999999999999999999999984
No 21
>1wjz_A 1700030A21RIK protein; J-domain, DNAJ like protein, structural genomics, riken structural genomics/proteomics initiative, RSGI, chaperone; NMR {Mus musculus} SCOP: a.2.3.1
Probab=99.73 E-value=4.9e-19 Score=135.55 Aligned_cols=61 Identities=31% Similarity=0.514 Sum_probs=56.5
Q ss_pred CeeeCCCCCCCHHHHHHHHHHHHHHhCCCCCCC-------H---HHHHHHHHHHhhcCCCccccccccccc
Q 021275 1 MRFSESRKNASQDDLKKAYRKAAIKNHPDKGGD-------P---EKFKELAQAYEVLSDPEKREIYDQYGE 61 (315)
Q Consensus 1 y~vLgv~~~a~~~~ik~ayr~la~~~hPd~~~~-------~---~~f~~i~~Ay~~L~d~~~R~~YD~~g~ 61 (315)
|+||||+++|+.+|||+|||+|+++||||+++. + ++|++|++||++|+||.+|+.||.+..
T Consensus 19 y~iLgv~~~as~~eIk~aYr~l~~~~HPDk~~~~~~~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~YD~~l~ 89 (94)
T 1wjz_A 19 YSILGADPSANMSDLKQKYQKLILLYHPDKQSADVPAGTMEECMQKFIEIDQAWKILGNEETKKKYDLQRS 89 (94)
T ss_dssp HHHTTCCTTCCHHHHHHHHHHTTSSSCSTTCCTTCCHHHHHHHHHHHHHHHHHHHHHSSSSHHHHHHHHSC
T ss_pred HHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCCChhhhHHHHHHHHHHHHHHHHHCCHHHHHHHHHHcc
Confidence 789999999999999999999999999999863 1 799999999999999999999998653
No 22
>1faf_A Large T antigen; J domain, HPD motif, anti-parallel hairpin of helices, viral protein; NMR {Murine polyomavirus} SCOP: a.2.3.1
Probab=99.73 E-value=5e-19 Score=131.03 Aligned_cols=62 Identities=18% Similarity=0.341 Sum_probs=57.1
Q ss_pred CeeeCCCCC--CCHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHhhcCCCccccccccccccc
Q 021275 1 MRFSESRKN--ASQDDLKKAYRKAAIKNHPDKGGDPEKFKELAQAYEVLSDPEKREIYDQYGEDA 63 (315)
Q Consensus 1 y~vLgv~~~--a~~~~ik~ayr~la~~~hPd~~~~~~~f~~i~~Ay~~L~d~~~R~~YD~~g~~~ 63 (315)
|+||||+++ |+.++||+|||+||+++|||++++.++|++|++||++|+|+.+|+. |.||+.+
T Consensus 14 y~iLgl~~~~~a~~~eIk~aYr~la~~~HPDk~~~~~~f~~i~~AYe~L~~~~~r~~-~~~g~~~ 77 (79)
T 1faf_A 14 LELLKLPRQLWGDFGRMQQAYKQQSLLLHPDKGGSHALMQELNSLWGTFKTEVYNLR-MNLGGTG 77 (79)
T ss_dssp HHHHTCCSSSTTCHHHHHHHHHHHHHHSSGGGSCCHHHHHHHHHHHHHHHHHHHHHT-TCCSSCC
T ss_pred HHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCCHHHHHHHHHHHHHHhhHHHHHH-HhcCCcc
Confidence 689999999 9999999999999999999999999999999999999999999988 5577543
No 23
>1gh6_A Large T antigen; tumor suppressor, oncoprotein, antitumor protein; 3.20A {Simian virus 40} SCOP: a.2.3.1
Probab=99.73 E-value=1.8e-19 Score=142.39 Aligned_cols=61 Identities=33% Similarity=0.479 Sum_probs=58.8
Q ss_pred CeeeCCCCCCCH--HHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHhhcCCCccccccccccc
Q 021275 1 MRFSESRKNASQ--DDLKKAYRKAAIKNHPDKGGDPEKFKELAQAYEVLSDPEKREIYDQYGE 61 (315)
Q Consensus 1 y~vLgv~~~a~~--~~ik~ayr~la~~~hPd~~~~~~~f~~i~~Ay~~L~d~~~R~~YD~~g~ 61 (315)
|+||||+++|+. ++||+|||+||+++|||++++.++|++|++||++|+||.+|+.||.+|.
T Consensus 11 Y~iLgv~~~as~~~~eIk~aYr~la~~~HPDk~~~~e~f~~I~~AYevL~d~~~R~~~~~~~~ 73 (114)
T 1gh6_A 11 MDLLGLERSAWGNIPLMRKAYLKKCKEFHPDKGGDEEKMKKMNTLYKKMEDGVKYAHQPDFGG 73 (114)
T ss_dssp HHHTTCCTTSCSCHHHHHHHHHHTTTTCCTTTCCTTTTTHHHHHHHHHHHHHHHSCCSSCCSC
T ss_pred HHHcCCCCCCCcCHHHHHHHHHHHHHHHCCCCCccHHHHHHHHHHHHHHCCHHHHHHhhhccc
Confidence 789999999999 9999999999999999999988999999999999999999999999875
No 24
>3apq_A DNAJ homolog subfamily C member 10; thioredoxin fold, DNAJ domain, endoplasmic reticulum, oxidor; 1.84A {Mus musculus}
Probab=99.72 E-value=8.5e-19 Score=152.92 Aligned_cols=67 Identities=37% Similarity=0.675 Sum_probs=61.8
Q ss_pred CeeeCCCCCCCHHHHHHHHHHHHHHhCCCCCCCH----HHHHHHHHHHhhcCCCccccccccccccccccc
Q 021275 1 MRFSESRKNASQDDLKKAYRKAAIKNHPDKGGDP----EKFKELAQAYEVLSDPEKREIYDQYGEDALKEG 67 (315)
Q Consensus 1 y~vLgv~~~a~~~~ik~ayr~la~~~hPd~~~~~----~~f~~i~~Ay~~L~d~~~R~~YD~~g~~~~~~g 67 (315)
|+||||+++|+.++||+|||+||++||||++++. ++|++|++||++|+||.+|+.||++|+.++...
T Consensus 5 y~~l~~~~~a~~~~ik~ay~~l~~~~HPD~~~~~~~~~~~f~~i~~Ay~~L~~~~~r~~yd~~~~~~~~~~ 75 (210)
T 3apq_A 5 YSLLGVSKTASSREIRQAFKKLALKLHPDKNPNNPNAHGDFLKINRAYEVLKDEDLRKKYDKYGEKGLEDN 75 (210)
T ss_dssp HHHHTCCTTCCHHHHHHHHHHHHHHHCGGGCTTCTTHHHHHHHHHHHHHHHTSHHHHHHHHHHTTTTCCTT
T ss_pred HHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHhcccccccc
Confidence 7899999999999999999999999999998632 799999999999999999999999998877543
No 25
>2pf4_E Small T antigen; PP2A, SV40, DNAJ, aalpha subunit, hydrolase regulat protein complex; 3.10A {Simian virus 40} PDB: 2pkg_C
Probab=99.71 E-value=3e-19 Score=150.63 Aligned_cols=61 Identities=33% Similarity=0.474 Sum_probs=55.9
Q ss_pred CeeeCCCCCCC--HHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHhhcCCCccccccccccc
Q 021275 1 MRFSESRKNAS--QDDLKKAYRKAAIKNHPDKGGDPEKFKELAQAYEVLSDPEKREIYDQYGE 61 (315)
Q Consensus 1 y~vLgv~~~a~--~~~ik~ayr~la~~~hPd~~~~~~~f~~i~~Ay~~L~d~~~R~~YD~~g~ 61 (315)
|+||||+++|+ .+|||+|||+||+++|||+++++++|++|++||++|+||.+|+.||++|.
T Consensus 14 Y~vLGl~~~as~~~~eIKkAYRkLa~~~HPDk~~~~e~F~~I~~AYevLsdp~kR~~YD~~G~ 76 (174)
T 2pf4_E 14 MDLLGLERSAWGNIPLMRKAYLKKCKEFHPDKGGDEEKMKKMNTLYKKMEDGVKYAHQPDFGG 76 (174)
T ss_dssp HHTTTCCGGGTTCHHHHHHHHHHHGGGCSCC---CCTTTTHHHHHHHHHHHHHHHHTSCGGGG
T ss_pred HHHcCCCCCCCcCHHHHHHHHHHHHHHHCcCCCCCHHHHHHHHHHHHHhCCHHHHHHHhccCC
Confidence 78999999999 69999999999999999999988999999999999999999999999985
No 26
>2qsa_A DNAJ homolog DNJ-2; J-domain, HSP40, APC90001.8, structural genomics, PSI-2, Pro structure initiative; 1.68A {Caenorhabditis elegans}
Probab=99.70 E-value=1.1e-18 Score=137.30 Aligned_cols=62 Identities=37% Similarity=0.601 Sum_probs=58.1
Q ss_pred CeeeCCCCCC-CHHHHHHHHHHHHHHhCCCCCCC-------HHHHHHHHHHHhhcCCCcccccccccccc
Q 021275 1 MRFSESRKNA-SQDDLKKAYRKAAIKNHPDKGGD-------PEKFKELAQAYEVLSDPEKREIYDQYGED 62 (315)
Q Consensus 1 y~vLgv~~~a-~~~~ik~ayr~la~~~hPd~~~~-------~~~f~~i~~Ay~~L~d~~~R~~YD~~g~~ 62 (315)
|+||||+++| +.++||+|||+|++++|||++++ .++|++|++||++|+||.+|+.||+++..
T Consensus 18 y~iLgv~~~a~s~~eIk~aYr~l~~~~HPDk~~~~~~~~~a~~~f~~i~~AY~~L~d~~~R~~YD~~~~~ 87 (109)
T 2qsa_A 18 YDVLEVNREEFDKQKLAKAYRALARKHHPDRVKNKEEKLLAEERFRVIATAYETLKDDEAKTNYDYYLDH 87 (109)
T ss_dssp HHHTTCCGGGCCHHHHHHHHHHHHHHTCGGGCCSHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHC
T ss_pred HHHcCCCCCCCCHHHHHHHHHHHHHHHCcCCCCCccccHHHHHHHHHHHHHHHHHCCHHHHHHHHHhccC
Confidence 6899999999 99999999999999999999986 27999999999999999999999998753
No 27
>2ys8_A RAB-related GTP-binding protein RABJ; DNAJ domain, RAS-associated protein RAP1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.68 E-value=1e-17 Score=127.13 Aligned_cols=55 Identities=35% Similarity=0.444 Sum_probs=51.5
Q ss_pred CeeeCCCCCCCHHHHHHHHHHHHHHhCCCCCCCH---HHHHHHHHHHhhcCCCccccc
Q 021275 1 MRFSESRKNASQDDLKKAYRKAAIKNHPDKGGDP---EKFKELAQAYEVLSDPEKREI 55 (315)
Q Consensus 1 y~vLgv~~~a~~~~ik~ayr~la~~~hPd~~~~~---~~f~~i~~Ay~~L~d~~~R~~ 55 (315)
|+||||+++|+.+|||+|||+|+++||||+++++ ++|++|++||++|+||.+|+.
T Consensus 30 y~iLgv~~~as~~eIk~aYr~la~~~HPDk~~~~~~~~~f~~i~~Ay~~L~d~~~R~~ 87 (90)
T 2ys8_A 30 WDMLGVKPGASRDEVNKAYRKLAVLLHPDKCVAPGSEDAFKAVVNARTALLKNIKSGP 87 (90)
T ss_dssp HHHHTCCTTCCHHHHHHHHHHHHHHHCTTTCCCTTHHHHHHHHHHHHHHHHHHHCCSC
T ss_pred HHHcCcCCCCCHHHHHHHHHHHHHHHCcCCCCCccHHHHHHHHHHHHHHHCCcccccC
Confidence 7899999999999999999999999999999654 899999999999999999874
No 28
>2l6l_A DNAJ homolog subfamily C member 24; DPH4, Zn-CSL, J-domain, chaperone; NMR {Homo sapiens}
Probab=99.66 E-value=1.6e-17 Score=138.73 Aligned_cols=61 Identities=31% Similarity=0.488 Sum_probs=56.8
Q ss_pred CeeeCCCCCCCHHHHHHHHHHHHHHhCCCCCCCH----------HHHHHHHHHHhhcCCCccccccccccc
Q 021275 1 MRFSESRKNASQDDLKKAYRKAAIKNHPDKGGDP----------EKFKELAQAYEVLSDPEKREIYDQYGE 61 (315)
Q Consensus 1 y~vLgv~~~a~~~~ik~ayr~la~~~hPd~~~~~----------~~f~~i~~Ay~~L~d~~~R~~YD~~g~ 61 (315)
|+||||+++|+.++||+|||+|++++|||+++.+ ++|++|++||++|+||.+|+.||..+.
T Consensus 13 y~iLgv~~~a~~~eIk~aYr~l~~~~HPDk~~~~~~~~~~~~a~~~f~~i~~Ay~~L~dp~~R~~Yd~~~~ 83 (155)
T 2l6l_A 13 YSILGADPSANISDLKQKYQKLILMYHPDKQSTDVPAGTVEECVQKFIEIDQAWKILGNEETKREYDLQRC 83 (155)
T ss_dssp HHHHTCCTTCCHHHHHHHHHHHHHHHSCCCCCCCCTTHHHHHHHHHHHHHHHHHHHSSSHHHHCHHHHHHH
T ss_pred hHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCCchhHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHcc
Confidence 7899999999999999999999999999998643 799999999999999999999998664
No 29
>2guz_A Mitochondrial import inner membrane translocase subunit TIM14; DNAJ-fold, chaperone, protein transport; HET: FLC; 2.00A {Saccharomyces cerevisiae}
Probab=99.65 E-value=3.7e-17 Score=118.48 Aligned_cols=54 Identities=26% Similarity=0.434 Sum_probs=50.5
Q ss_pred CeeeCCCC-CCCHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHhhcCCCcccc
Q 021275 1 MRFSESRK-NASQDDLKKAYRKAAIKNHPDKGGDPEKFKELAQAYEVLSDPEKRE 54 (315)
Q Consensus 1 y~vLgv~~-~a~~~~ik~ayr~la~~~hPd~~~~~~~f~~i~~Ay~~L~d~~~R~ 54 (315)
|+||||++ +||.++||+|||+|+++||||+++++++|++|++||++|+|+..|+
T Consensus 17 y~iLgl~~~~a~~~eIk~ayr~l~~~~HPDk~g~~~~f~~i~~Aye~L~~~~~rk 71 (71)
T 2guz_A 17 LQILNLTENTLTKKKLKEVHRKIMLANHPDKGGSPFLATKINEAKDFLEKRGISK 71 (71)
T ss_dssp HHHTTCCTTTCCHHHHHHHHHHHHHHHCGGGTCCHHHHHHHHHHHHHHHHHCCCC
T ss_pred HHHcCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHhhhhhcC
Confidence 67999999 7999999999999999999999988899999999999999887664
No 30
>1iur_A KIAA0730 protein; DNAJ like domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Homo sapiens} SCOP: a.2.3.1
Probab=99.63 E-value=4.4e-17 Score=122.83 Aligned_cols=55 Identities=25% Similarity=0.299 Sum_probs=50.6
Q ss_pred CeeeCCCCCCCHHHHHHHHHHHHHHhCCCCCCCH-----HHHHHHHHHHhhcCCCccccc
Q 021275 1 MRFSESRKNASQDDLKKAYRKAAIKNHPDKGGDP-----EKFKELAQAYEVLSDPEKREI 55 (315)
Q Consensus 1 y~vLgv~~~a~~~~ik~ayr~la~~~hPd~~~~~-----~~f~~i~~Ay~~L~d~~~R~~ 55 (315)
|+||||+++||.+|||+|||+||++||||++++. ++|++|++||++|+|...|..
T Consensus 19 y~vLgv~~~as~~eIKkaYrkla~~~HPDk~~~~~~~a~~~F~~I~~AYevL~~~~~r~~ 78 (88)
T 1iur_A 19 TSVVEQAWKLPESERKKIIRRLYLKWHPDKNPENHDIANEVFKHLQNEINRLEKQAFLDQ 78 (88)
T ss_dssp HHHHHHTTSSCSHHHHHHHHHHHHHTCTTTSSSCHHHHHHHHHHHHHHHHHHHHHTTCSS
T ss_pred HHHhCCCCCCCHHHHHHHHHHHHHHHCCCCCCCchHHHHHHHHHHHHHHHHHHhhccccc
Confidence 6899999999999999999999999999999862 799999999999999877743
No 31
>1xao_A YDJ1, mitochondrial protein import protein MAS5; beta sheets, chaperone; 2.07A {Saccharomyces cerevisiae}
Probab=99.58 E-value=2e-15 Score=120.72 Aligned_cols=61 Identities=34% Similarity=0.540 Sum_probs=58.3
Q ss_pred CcEEeCCcEEEEEecCHHHHhCCCEEEEeCCCCCeEEEecCCCceeeCCcEEEEeCCCCcc
Q 021275 249 KFKRKGDDLFVEHTLSLTEALCGFQFVITHLDGRQLLIKSQPGEVVKPGKYNWMDVSLNLS 309 (315)
Q Consensus 249 ~f~r~g~dL~~~~~I~l~~al~G~~~~v~tldG~~~~i~~~~~~v~~pg~~~~i~~~~~~~ 309 (315)
.|+|+|+||+++++|+|++||+|++++|+||||+.+.|++|+|+|++||++++|+|+|.+.
T Consensus 1 ~F~R~G~DL~~~~~Isl~eAllG~~i~v~tldG~~~~v~ip~g~v~~~G~~~rl~G~Gmp~ 61 (121)
T 1xao_A 1 SFKRDGDDLVYEAEIDLLTAIAGGEFALEHVSGDWLKVGIVPGEVIAPGMRKVIEGKGMPI 61 (121)
T ss_dssp CCEEETTEEEEEEEEEHHHHHHCEEEEEECTTSCEEEEEECTTSCCCTTCEEEETTCSCC-
T ss_pred CceEECCeEEEEEEcCHHHHhCCCEEEEecCCCCEEEEEeCCCCeeCCCcEEEECCCCCCC
Confidence 4999999999999999999999999999999999899999999999999999999999874
No 32
>1nlt_A Protein YDJ1, mitochondrial protein import protein MAS5; beta-strands, chaperone, heat shock, mitochondrion; 2.70A {Saccharomyces cerevisiae} SCOP: b.4.1.1 b.4.1.1 g.54.1.1
Probab=99.57 E-value=4e-15 Score=133.31 Aligned_cols=134 Identities=19% Similarity=0.338 Sum_probs=83.6
Q ss_pred eeeeeee---ccccceeeEeeceeeEEccCCCCCCcccC----------CceecCCCcCCceEEEEEecCCcceeEe--e
Q 021275 109 PLKVSLE---DLYNGTSKKLSLSRNVICTKCKGKGSKSG----------ASMKCSGCQGSGMKVSIRHLGPSMIQQM--Q 173 (315)
Q Consensus 109 ~~~~~l~---e~~~G~~~~~~~~~~~~C~~C~G~G~~~~----------~~~~C~~C~G~G~~~~~~~~~~g~~~~~--~ 173 (315)
.+.++.. +.|.|...+ ... ...|+.|+|+|.... ...+|+.|+|+|. .+ .
T Consensus 32 ~i~~~r~~~C~~C~G~G~~-~g~-~~~C~~C~G~G~~~~~~~~g~~~~~~~~~C~~C~G~G~-------------~i~~~ 96 (248)
T 1nlt_A 32 KLALNKQILCKECEGRGGK-KGA-VKKCTSCNGQGIKFVTRQMGPMIQRFQTECDVCHGTGD-------------IIDPK 96 (248)
T ss_dssp EEEEEEEEECTTTTTCSBS-TTT-CCCCTTSSSSSCEEEEEESSSEEEEEECSCTTCSSSSS-------------CCCTT
T ss_pred EEEeeEEEeCCCCcCccCC-CCC-CccCCCCCCCcEEEEEEecCceEEEEEEcCCCCCCcCE-------------EeccC
Confidence 3444444 445665544 222 378999999997521 2457999999993 44 7
Q ss_pred eeCCCCCCCceEeCCCCCCCc------------------------cCCceEEEEe-------------------------
Q 021275 174 HPCNECKGTGETINDKDRCPQ------------------------CKGEKVIQEK------------------------- 204 (315)
Q Consensus 174 ~~C~~C~G~G~~~~~~~~C~~------------------------C~G~g~~~~~------------------------- 204 (315)
.+|+.|+|.|.+... ..... -.|.-++...
T Consensus 97 ~~C~~C~G~g~~~~~-~~l~V~Ip~G~~~G~~ir~~g~G~~~~~g~~GDl~v~i~v~~h~~F~R~G~DL~~~~~Isl~eA 175 (248)
T 1nlt_A 97 DRCKSCNGKKVENER-KILEVHVEPGMKDGQRIVFKGEADQAPDVIPGDVVFIVSERPHKSFKRDGDDLVYEAEIDLLTA 175 (248)
T ss_dssp SBCSSSTTSCEEEEE-EEEEEEECTTCCTTCEEEETTCSCCCTTCBCCCEEEEEEECCCSSCEEETTEEEEEEEEEHHHH
T ss_pred CCCcccCCCceEeee-EEEEEEECCCccCCCEEEEeeeecCCCCCCcceEEEEEEEecCccceeeCCEEEEEEEeCHHHH
Confidence 899999999876430 00000 0011111110
Q ss_pred -------------EEEEEEeccc--ccCCcEEEEcCCcCCCC-CCCccCEEEEEEEecCCC--cEEeCCcEE
Q 021275 205 -------------KVLEVIVEKG--MQNGQKITFPGEADEAP-DTVTGDIVFVLQQKEHPK--FKRKGDDLF 258 (315)
Q Consensus 205 -------------~~~~v~Ip~G--~~~G~~i~l~g~G~~~~-~~~~GDL~v~i~v~~~~~--f~r~g~dL~ 258 (315)
..++|+|||| +++|++++|+|+|++.. +...|||||+|+|..|+. ++.++.+|+
T Consensus 176 llG~~i~v~tldG~~~~i~ip~g~vt~~g~~~rl~g~Gmp~~~~~~~GDL~V~~~V~~P~~~~Ls~~q~~~l 247 (248)
T 1nlt_A 176 IAGGEFALEHVSGDWLKVGIVPGEVIAPGMRKVIEGKGMPIPKYGGYGNLIIKFTIKDPENHFTSEENLKKL 247 (248)
T ss_dssp HHCBCCEEECSSSCEEECCBCTTTTCSTTCEEEETTCSCBCSSSCSBCCEEEEEEEECCC------------
T ss_pred hcCCEEEEeCCCCCEEEEEeCCCCeeCCCeEEEEcCCCCccCCCCCcCCEEEEEEEECCCCCCCCHHHHHhh
Confidence 0466999999 99999999999999964 336799999999998887 777776654
No 33
>3i38_A Putative chaperone DNAJ; structural genomics, protein structure initiative, midwest center for structural genomics, MCSG; 2.30A {Klebsiella pneumoniae subsp}
Probab=99.57 E-value=3.6e-15 Score=116.95 Aligned_cols=62 Identities=24% Similarity=0.329 Sum_probs=57.8
Q ss_pred ecCCCcEEeCCcEEEEEecCHHHHhCCCEEEEeCCCCCeEEEecCCCceeeCCcEEEEeCCCCcc
Q 021275 245 KEHPKFKRKGDDLFVEHTLSLTEALCGFQFVITHLDGRQLLIKSQPGEVVKPGKYNWMDVSLNLS 309 (315)
Q Consensus 245 ~~~~~f~r~g~dL~~~~~I~l~~al~G~~~~v~tldG~~~~i~~~~~~v~~pg~~~~i~~~~~~~ 309 (315)
+||+.|+|+|+||+++++|+|.||++|++++|+||||. +.|+||+| ++||++++|+|+|.+.
T Consensus 2 kph~~F~R~G~DL~~~~~Isl~eAl~G~~i~v~tldG~-~~v~ip~g--~~~G~~~rl~G~G~p~ 63 (109)
T 3i38_A 2 NAHPLFDIVGHNLEIVLPLAPWEAALGAKVTVPTLKES-ILLTVPPG--SQAGQRLRIKGKGLVS 63 (109)
T ss_dssp --CCCCEEETTEEEEEEEECHHHHHHCEEEEECCSSSC-EEEEECTT--CCTTCEEEETTCSCBC
T ss_pred CCCCCeEEECCEEEEEEEcCHHHHhCCCEEEEEcCCCC-EEEeeCCC--cCcCeEEEECCccCCC
Confidence 68999999999999999999999999999999999995 89999999 9999999999999874
No 34
>2qwo_B Putative tyrosine-protein phosphatase auxilin; chaperone-cochaperone complex, ATP-binding, nucleotide-bindi nucleus, phosphorylation, stress response; HET: ADP; 1.70A {Bos taurus} PDB: 2qwp_B* 2qwq_B* 2qwr_B* 2qwn_B* 1nz6_A
Probab=99.57 E-value=3.5e-16 Score=118.37 Aligned_cols=49 Identities=27% Similarity=0.367 Sum_probs=45.3
Q ss_pred CeeeCCCCCCCHHHHHHHHHHHHHHhCCCCCCCH-------HHHHHHHHHHhhcCC
Q 021275 1 MRFSESRKNASQDDLKKAYRKAAIKNHPDKGGDP-------EKFKELAQAYEVLSD 49 (315)
Q Consensus 1 y~vLgv~~~a~~~~ik~ayr~la~~~hPd~~~~~-------~~f~~i~~Ay~~L~d 49 (315)
|++|||++.||.+|||+|||++|++||||+++++ ++|++|++||++|.+
T Consensus 36 y~~Lgv~~~as~~eIKkAYRklal~~HPDK~~~~~~~~~A~~~F~~i~eAyevL~~ 91 (92)
T 2qwo_B 36 WKPVGMADLVTPEQVKKVYRKAVLVVHPCKATGQPYEQYAKMIFMELNDAWSEFEN 91 (92)
T ss_dssp CCCCCGGGSSSHHHHHHHHHHHHHHTCHHHHTTSTTHHHHHHHHHHHHHHHHHHHH
T ss_pred CeecCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchhHhHHHHHHHHHHHHHHHHHh
Confidence 8899999999999999999999999999998742 589999999999964
No 35
>1fpo_A HSC20, chaperone protein HSCB; molecular chaperone; 1.80A {Escherichia coli} SCOP: a.2.3.1 a.23.1.1
Probab=99.57 E-value=3.3e-16 Score=132.58 Aligned_cols=60 Identities=18% Similarity=0.196 Sum_probs=55.7
Q ss_pred CeeeCCCCCC--CHHHHHHHHHHHHHHhCCCCCCCH---------HHHHHHHHHHhhcCCCcccccccccc
Q 021275 1 MRFSESRKNA--SQDDLKKAYRKAAIKNHPDKGGDP---------EKFKELAQAYEVLSDPEKREIYDQYG 60 (315)
Q Consensus 1 y~vLgv~~~a--~~~~ik~ayr~la~~~hPd~~~~~---------~~f~~i~~Ay~~L~d~~~R~~YD~~g 60 (315)
|+||||++++ |.++||+|||+|+++||||++++. ++|+.|++||++|+||.+|+.||...
T Consensus 4 y~lLgl~~~a~i~~~eIk~aYr~L~~~~HPDk~~~~~~~e~~~a~~~f~~In~AY~vL~dp~~R~~Yd~~l 74 (171)
T 1fpo_A 4 FTLFGLPARYQLDTQALSLRFQDLQRQYHPDKFASGSQAEQLAAVQQSATINQAWQTLRHPLMRAEYLLSL 74 (171)
T ss_dssp HHHTTCCSSSCCCHHHHHHHHHHHHHHTCGGGGTTSCHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHT
T ss_pred HHHCCCCCCCCCCHHHHHHHHHHHHHHhCcCCCCCCCHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHh
Confidence 7899999999 999999999999999999998752 48999999999999999999999864
No 36
>3hho_A CO-chaperone protein HSCB homolog; structural genomics, IDP01304, center for structural genomics of infectious diseases, CSGI; 2.15A {Vibrio cholerae}
Probab=99.56 E-value=4.6e-16 Score=132.09 Aligned_cols=59 Identities=20% Similarity=0.282 Sum_probs=54.9
Q ss_pred CeeeCCCCCCC--HHHHHHHHHHHHHHhCCCCCCCH---------HHHHHHHHHHhhcCCCccccccccc
Q 021275 1 MRFSESRKNAS--QDDLKKAYRKAAIKNHPDKGGDP---------EKFKELAQAYEVLSDPEKREIYDQY 59 (315)
Q Consensus 1 y~vLgv~~~a~--~~~ik~ayr~la~~~hPd~~~~~---------~~f~~i~~Ay~~L~d~~~R~~YD~~ 59 (315)
|+||||+++++ .++||+|||+|+++||||++++. ++|+.|++||++|+||.+|+.||..
T Consensus 7 Y~iLgl~~~a~id~~eIk~aYr~l~~~~HPDk~~~~~~~e~~~a~~~f~~In~AY~vL~dp~~R~~Yd~~ 76 (174)
T 3hho_A 7 FELFGLPIQFELDGSLLSSQFRALQKRFHPDNFATASERDRLMAVQQAAQINDAYQTLKDPLRRAEYLLS 76 (174)
T ss_dssp HHHTTCCSSSCCCHHHHHHHHHHHHHHHCGGGSTTSCHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHH
T ss_pred HHHcCcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCcHHHHHHHHHHHHHHHHHHHHHcChHHHHHHHHH
Confidence 78999999998 99999999999999999998642 5899999999999999999999974
No 37
>3bvo_A CO-chaperone protein HSCB, mitochondrial precurso; structural genomics medical relev protein structure initiative, PSI-2; 3.00A {Homo sapiens}
Probab=99.55 E-value=6.4e-16 Score=134.54 Aligned_cols=58 Identities=19% Similarity=0.308 Sum_probs=53.4
Q ss_pred CeeeCCCCC--CCHHHHHHHHHHHHHHhCCCCCCCH---------HHHHHHHHHHhhcCCCcccccccc
Q 021275 1 MRFSESRKN--ASQDDLKKAYRKAAIKNHPDKGGDP---------EKFKELAQAYEVLSDPEKREIYDQ 58 (315)
Q Consensus 1 y~vLgv~~~--a~~~~ik~ayr~la~~~hPd~~~~~---------~~f~~i~~Ay~~L~d~~~R~~YD~ 58 (315)
|+||||+++ ++.++||+|||+|+++||||++++. ++|++|++||++|+||.+|+.||.
T Consensus 46 y~lLgv~~~~~a~~~eIk~aYr~L~~~~HPDk~~~~~~~e~~~a~~~f~~In~AY~vLsdp~~R~~Yd~ 114 (207)
T 3bvo_A 46 FSLMDCNRSFRVDTAKLQHRYQQLQRLVHPDFFSQRSQTEKDFSEKHSTLVNDAYKTLLAPLSRGLYLL 114 (207)
T ss_dssp HHHTTSCSCSCCCHHHHHHHHHHHHHHHCGGGGTTSCHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHH
T ss_pred HHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHH
Confidence 789999986 7999999999999999999998742 579999999999999999999995
No 38
>3apo_A DNAJ homolog subfamily C member 10; PDI family, thioredoxin, endoplasmic reticulum, oxidoreducta; 2.40A {Mus musculus}
Probab=99.53 E-value=3.9e-16 Score=160.83 Aligned_cols=67 Identities=37% Similarity=0.675 Sum_probs=39.5
Q ss_pred CeeeCCCCCCCHHHHHHHHHHHHHHhCCCCCCCH----HHHHHHHHHHhhcCCCccccccccccccccccc
Q 021275 1 MRFSESRKNASQDDLKKAYRKAAIKNHPDKGGDP----EKFKELAQAYEVLSDPEKREIYDQYGEDALKEG 67 (315)
Q Consensus 1 y~vLgv~~~a~~~~ik~ayr~la~~~hPd~~~~~----~~f~~i~~Ay~~L~d~~~R~~YD~~g~~~~~~g 67 (315)
|+||||+++||.+|||+|||+||++||||++++. ++|++|++||++|+||.+|+.||+||++++..+
T Consensus 24 y~~lg~~~~a~~~~i~~ay~~l~~~~hpd~~~~~~~~~~~f~~i~~ay~~L~~~~~r~~yd~~~~~~~~~~ 94 (780)
T 3apo_A 24 YSLLGVSKTASSREIRQAFKKLALKLHPDKNPNNPNAHGDFLKINRAYEVLKDEDLRKKYDKYGEKGLEDN 94 (780)
T ss_dssp HHHHTCCTTCCHHHHHHHHCC-----------------------CTHHHHHHSHHHHHHHTTC--------
T ss_pred HHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCChHHHHHHHHHHHHHHHHcChHHHHHHHhhcccccccC
Confidence 7899999999999999999999999999998642 799999999999999999999999999887654
No 39
>3ag7_A Putative uncharacterized protein F9E10.5; J-domain, AN auxilin-like J-domain containing protein, JAC1, chloroplast accumulation response; 1.80A {Arabidopsis thaliana}
Probab=99.52 E-value=1.8e-15 Score=117.91 Aligned_cols=50 Identities=20% Similarity=0.309 Sum_probs=45.6
Q ss_pred CeeeCCCCCCCHHHHHHHHHHHHHHhCCCCCCC-----------HHHHHHHHHHHhhcCCCc
Q 021275 1 MRFSESRKNASQDDLKKAYRKAAIKNHPDKGGD-----------PEKFKELAQAYEVLSDPE 51 (315)
Q Consensus 1 y~vLgv~~~a~~~~ik~ayr~la~~~hPd~~~~-----------~~~f~~i~~Ay~~L~d~~ 51 (315)
|+||+++. ||.++||+|||+||++||||++++ .++|++|++||++|+|+.
T Consensus 44 Y~vl~~~~-As~~eIKkAYRklal~~HPDK~~~~~~~~e~~~~A~~~F~~I~~AYevLsd~~ 104 (106)
T 3ag7_A 44 KPVPLMDM-IEGNAVRKSYQRALLILHPDKLQQKGASANQKYMAEKVFELLQEAWDHFNTLG 104 (106)
T ss_dssp CCCCGGGS-CSHHHHHHHHHHHHHHHCHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred HHHcCCCC-CCHHHHHHHHHHHHHHHCcCcCCCcccchhhHHHHHHHHHHHHHHHHHHcCcc
Confidence 78999996 999999999999999999999752 268999999999999975
No 40
>3uo3_A J-type CO-chaperone JAC1, mitochondrial; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, J-protein; 1.85A {Saccharomyces cerevisiae} PDB: 3uo2_A
Probab=99.49 E-value=2.8e-15 Score=127.85 Aligned_cols=59 Identities=31% Similarity=0.455 Sum_probs=54.0
Q ss_pred Ceee------CCCC-CCCHHHHHHHHHHHHHHhCCCCCCC-HHHHHHHHHHHhhcCCCccccccccc
Q 021275 1 MRFS------ESRK-NASQDDLKKAYRKAAIKNHPDKGGD-PEKFKELAQAYEVLSDPEKREIYDQY 59 (315)
Q Consensus 1 y~vL------gv~~-~a~~~~ik~ayr~la~~~hPd~~~~-~~~f~~i~~Ay~~L~d~~~R~~YD~~ 59 (315)
|+|| |+++ +||.++||+|||+|+++||||++++ .++|++|++||++|+||.+|+.||..
T Consensus 14 y~ll~~~~p~~~~~~~a~~~eIk~aYr~la~~~HPDk~~~a~~~f~~i~~AY~vL~dp~~R~~Yd~~ 80 (181)
T 3uo3_A 14 YELFPKTFPKKLPIWTIDQSRLRKEYRQLQAQHHPDMAQQGSEQSSTLNQAYHTLKDPLRRSQYMLK 80 (181)
T ss_dssp GGGCTTTCTTCSCCSCCCHHHHHHHHHHHHHTCCTTSCCSCSSGGGSHHHHHHHHHSHHHHHHHHHH
T ss_pred HHHhccccccCCCCCCCCHHHHHHHHHHHHHHhCcCCCccHHHHHHHHHHHHHHHcChHHHHHHHHH
Confidence 7899 4654 9999999999999999999999984 48999999999999999999999984
No 41
>1exk_A DNAJ protein; extended beta-hairpin, CXXCXGXG, zinc-binding motif, chaperone; NMR {Escherichia coli} SCOP: g.54.1.1
Probab=99.46 E-value=1e-13 Score=102.35 Aligned_cols=77 Identities=30% Similarity=0.759 Sum_probs=64.1
Q ss_pred ceeeEeeceeeEEccCCCCCCcccCC-ceecCCCcCCceEEEEEecCCcceeEeeeeCCCCCCCceEeCCCCCCCccCCc
Q 021275 120 GTSKKLSLSRNVICTKCKGKGSKSGA-SMKCSGCQGSGMKVSIRHLGPSMIQQMQHPCNECKGTGETINDKDRCPQCKGE 198 (315)
Q Consensus 120 G~~~~~~~~~~~~C~~C~G~G~~~~~-~~~C~~C~G~G~~~~~~~~~~g~~~~~~~~C~~C~G~G~~~~~~~~C~~C~G~ 198 (315)
|.++++.+.+.+.|+.|+|+|..... ..+|+.|+|+|.++..+ |+++ ++.+|+.|+|+|+++. ++|+.|+|.
T Consensus 1 G~~~~i~~~~~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~----g~~~-~~~~C~~C~G~G~~~~--~~C~~C~G~ 73 (79)
T 1exk_A 1 GVTKEIRIPTLEECDVCHGSGAKPGTQPQTCPTCHGSGQVQMRQ----GFFA-VQQTCPHCQGRGTLIK--DPCNKCHGH 73 (79)
T ss_dssp CTTTSCCCCCEEECGGGTTTSBCSSSCCEECTTTTTSSEEEEEE----TTEE-EEEECTTTTTSSEECS--SBCGGGTTS
T ss_pred CcEEEEEcccceECCCCcccccCCCccCCCCCCCcCeEEEEEEc----CCCE-EeeECcCCCCccEECC--CcCCCCCCe
Confidence 45677889999999999999987665 46899999999876533 4444 6789999999999986 899999999
Q ss_pred eEEEE
Q 021275 199 KVIQE 203 (315)
Q Consensus 199 g~~~~ 203 (315)
|++.+
T Consensus 74 G~~~~ 78 (79)
T 1exk_A 74 GRVER 78 (79)
T ss_dssp SEEEC
T ss_pred EEEee
Confidence 98854
No 42
>3i38_A Putative chaperone DNAJ; structural genomics, protein structure initiative, midwest center for structural genomics, MCSG; 2.30A {Klebsiella pneumoniae subsp}
Probab=99.13 E-value=1.2e-11 Score=96.70 Aligned_cols=51 Identities=25% Similarity=0.371 Sum_probs=43.9
Q ss_pred EEEEecccccCCcEEEEcCCcCCCCCCCccCEEEEEEEecCCCcEEeCCcEE
Q 021275 207 LEVIVEKGMQNGQKITFPGEADEAPDTVTGDIVFVLQQKEHPKFKRKGDDLF 258 (315)
Q Consensus 207 ~~v~Ip~G~~~G~~i~l~g~G~~~~~~~~GDL~v~i~v~~~~~f~r~g~dL~ 258 (315)
++|+||+|+++|++++|+|+|++..+ .+|||||+|+|..|+.++.++.+|+
T Consensus 40 ~~v~ip~g~~~G~~~rl~G~G~p~~~-~~GDL~v~~~V~~P~~Ls~~q~~~l 90 (109)
T 3i38_A 40 ILLTVPPGSQAGQRLRIKGKGLVSKT-HTGDLFAVIKIVMPTKPDEKARELW 90 (109)
T ss_dssp EEEEECTTCCTTCEEEETTCSCBCSS-CBCCEEEEEEECCCSSCCHHHHHHH
T ss_pred EEEeeCCCcCcCeEEEECCccCCCCC-CCcCEEEEEEEECCCCCCHHHHHHH
Confidence 67999999999999999999999754 7899999999998887766555444
No 43
>2guz_B Mitochondrial import inner membrane translocase subunit TIM16; DNAJ-fold, chaperone, protein transport; HET: FLC; 2.00A {Saccharomyces cerevisiae}
Probab=99.04 E-value=1.1e-10 Score=82.43 Aligned_cols=48 Identities=17% Similarity=0.180 Sum_probs=45.5
Q ss_pred CeeeCCCCC---CCHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHhhcC
Q 021275 1 MRFSESRKN---ASQDDLKKAYRKAAIKNHPDKGGDPEKFKELAQAYEVLS 48 (315)
Q Consensus 1 y~vLgv~~~---a~~~~ik~ayr~la~~~hPd~~~~~~~f~~i~~Ay~~L~ 48 (315)
|.||||+++ ++.++|++|||+|...+|||+.+++..+.+|++|++.|.
T Consensus 7 ~~ILgv~~~~~~a~~~~Ik~~yr~Lm~~nhPDkGGS~yl~~ki~~Ake~l~ 57 (65)
T 2guz_B 7 CKILNIEESKGDLNMDKINNRFNYLFEVNDKEKGGSFYLQSKVYRAAERLK 57 (65)
T ss_dssp HHHTTCCGGGTCCSHHHHHHHHHHHHHHTCGGGTCCHHHHHHHHHHHHHHH
T ss_pred HHHhCCCCCcCcCCHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHH
Confidence 469999999 999999999999999999999999999999999999985
No 44
>1xao_A YDJ1, mitochondrial protein import protein MAS5; beta sheets, chaperone; 2.07A {Saccharomyces cerevisiae}
Probab=99.01 E-value=1.2e-10 Score=92.89 Aligned_cols=52 Identities=15% Similarity=0.191 Sum_probs=40.8
Q ss_pred EEEEEeccc--ccCCcEEEEcCCcCCCCC-CCccCEEEEEEEecCCC--cEEeCCcE
Q 021275 206 VLEVIVEKG--MQNGQKITFPGEADEAPD-TVTGDIVFVLQQKEHPK--FKRKGDDL 257 (315)
Q Consensus 206 ~~~v~Ip~G--~~~G~~i~l~g~G~~~~~-~~~GDL~v~i~v~~~~~--f~r~g~dL 257 (315)
.+.|+||+| +++|++++|+|+|++..+ ..+|||||+|+|..|.. ++.++.+|
T Consensus 35 ~~~v~ip~g~v~~~G~~~rl~G~Gmp~~~~~~~GDL~V~~~V~~P~~~~ls~~q~~~ 91 (121)
T 1xao_A 35 WLKVGIVPGEVIAPGMRKVIEGKGMPIPKYGGYGNLIIKFTIKFPENHFTSEENLKK 91 (121)
T ss_dssp EEEEEECTTSCCCTTCEEEETTCSCC------CCCEEEEEEEECCCTTCSCHHHHHH
T ss_pred EEEEEeCCCCeeCCCcEEEECCCCCCCCCCCCCCCEEEEEEEECCCCCCCCHHHHHH
Confidence 467999999 999999999999999643 36899999999998876 66555444
No 45
>3agx_A DNAJ homolog subfamily B member 1; chaperone; 1.85A {Homo sapiens} PDB: 3agy_A 3agz_A 2qld_A
Probab=98.75 E-value=3.6e-09 Score=90.06 Aligned_cols=51 Identities=16% Similarity=0.326 Sum_probs=42.3
Q ss_pred EEEEEecccccCCcEEEEcCCcCCCC--CCCccCEEEEEEEecCCCcEEeCCc
Q 021275 206 VLEVIVEKGMQNGQKITFPGEADEAP--DTVTGDIVFVLQQKEHPKFKRKGDD 256 (315)
Q Consensus 206 ~~~v~Ip~G~~~G~~i~l~g~G~~~~--~~~~GDL~v~i~v~~~~~f~r~g~d 256 (315)
.++|+||+|+++|++++|+|+|++.. .+.+|||||+|+|..|+.++.++.+
T Consensus 121 ~~~i~i~~~t~~g~~~rl~g~Gmp~~~~~~~~GDL~V~~~V~~P~~ls~~q~~ 173 (181)
T 3agx_A 121 TIPVVFKDVIRPGMRRKVPGEGLPLPKTPEKRGDLIIEFEVIFPERIPQTSRT 173 (181)
T ss_dssp EEEEEECSCCCTTCEEEETTCSCBCSSSTTSBCCEEEEEEEECCSCCCHHHHH
T ss_pred EEEEECCCccCCCcEEEECCcCCCcCCCCCCcCCEEEEEEEECCCCCCHHHHH
Confidence 46788999999999999999999964 3568999999999988776654433
No 46
>2q2g_A HSP40 protein, heat shock 40 kDa protein, putative (fragment); malaria, structural genomics, structural genomics consortium, SGC; 1.90A {Cryptosporidium parvum iowa II}
Probab=98.71 E-value=5.6e-09 Score=88.85 Aligned_cols=50 Identities=10% Similarity=0.144 Sum_probs=41.8
Q ss_pred EEEEEecccccCCcEEEEcCCcCCCC--CCCccCEEEEEEEecCCCcEEeCC
Q 021275 206 VLEVIVEKGMQNGQKITFPGEADEAP--DTVTGDIVFVLQQKEHPKFKRKGD 255 (315)
Q Consensus 206 ~~~v~Ip~G~~~G~~i~l~g~G~~~~--~~~~GDL~v~i~v~~~~~f~r~g~ 255 (315)
.++|+||+|+++|++++|+|+|++.. .+.+|||||+|+|..|..++.++.
T Consensus 121 ~v~i~ip~~t~~g~~~rl~g~Gmp~~~~~~~~GDL~V~~~V~~P~~Ls~~q~ 172 (180)
T 2q2g_A 121 NLQIPIKEIVNPKTRKIVPNEGMPIKNQPGQKGDLILEFDICFPKSLTPEQK 172 (180)
T ss_dssp EEEEEECSCCCTTCEEEETTCSCBCSSSTTCBCCEEEEEEEECCSCCCHHHH
T ss_pred EEEEECCCccCCCEEEEECCcCCCcCCCCCCcCCEEEEEEEECCCCCCHHHH
Confidence 46788999999999999999999963 256899999999998876655443
No 47
>1c3g_A Heat shock protein 40; beta sheets, short helices, chaperone; 2.70A {Saccharomyces cerevisiae} SCOP: b.4.1.1 b.4.1.1 PDB: 2b26_A
Probab=98.70 E-value=3.3e-09 Score=89.44 Aligned_cols=49 Identities=16% Similarity=0.277 Sum_probs=41.0
Q ss_pred EEEEEecccccCCcEEEEcCCcCCCC--CCCccCEEEEEEEecCCCcEEeC
Q 021275 206 VLEVIVEKGMQNGQKITFPGEADEAP--DTVTGDIVFVLQQKEHPKFKRKG 254 (315)
Q Consensus 206 ~~~v~Ip~G~~~G~~i~l~g~G~~~~--~~~~GDL~v~i~v~~~~~f~r~g 254 (315)
.++|+||+|+++|++++|+|+|++.. .+.+|||||+|+|..|+.++.++
T Consensus 115 ~~~i~i~~~t~~g~~~rl~g~G~p~~~~~~~~GDL~V~~~V~~P~~Ls~~q 165 (170)
T 1c3g_A 115 TLPLSRVQPVQPSQTSTYPGQGMPTPKNPSQRGNLIVKYKVDYPISLNDAQ 165 (170)
T ss_dssp EEEEEESSCCCTTCEEECTTCSCBCSSCTTSBCCEEEEECCBCCSSCCTTH
T ss_pred EEEEECCCccCCCcEEEEeCCCCCcCCCCCCCCCEEEEEEEECCCCCCHHH
Confidence 46788999999999999999999963 24679999999999887665443
No 48
>3lz8_A Putative chaperone DNAJ; structure genomics, structural genomics, PSI-2, protein STRU initiative; 2.90A {Klebsiella pneumoniae subsp} PDB: 2kqx_A
Probab=98.60 E-value=1.2e-08 Score=94.78 Aligned_cols=52 Identities=27% Similarity=0.370 Sum_probs=43.9
Q ss_pred EEEEecccccCCcEEEEcCCcCCCCCCCccCEEEEEEEecCCCcEEeCCcEEE
Q 021275 207 LEVIVEKGMQNGQKITFPGEADEAPDTVTGDIVFVLQQKEHPKFKRKGDDLFV 259 (315)
Q Consensus 207 ~~v~Ip~G~~~G~~i~l~g~G~~~~~~~~GDL~v~i~v~~~~~f~r~g~dL~~ 259 (315)
++|+||+|+++|++++|+|+|++.. +.+|||||+|+|.-|+.++.++..|+.
T Consensus 260 v~l~ip~gt~~g~~~rl~G~GmP~~-~~rGDL~v~~~V~~P~~l~~~q~~~l~ 311 (329)
T 3lz8_A 260 ILLTVPPGSQAGQRLRIKGKGLVSK-THTGDLFAVIKIVMPTKPDEKARELWQ 311 (329)
T ss_dssp EEEEECTTCCTTCEEEETTCSCBCS-SCBCCEEEEEEECCCSSCCHHHHHHHH
T ss_pred EEEEECCCCCCCCEEEEcCCCCCCC-CCCCCEEEEEEEECCCCCCHHHHHHHH
Confidence 4789999999999999999999875 568999999999988877665555443
No 49
>1n4c_A Auxilin; four helix bundle, protein binding; NMR {Bos taurus} SCOP: a.2.3.1 PDB: 1xi5_J
Probab=98.54 E-value=2.3e-08 Score=84.64 Aligned_cols=33 Identities=30% Similarity=0.435 Sum_probs=31.5
Q ss_pred CeeeCCCCCCCHHHHHHHHHHHHHHhCCCCCCC
Q 021275 1 MRFSESRKNASQDDLKKAYRKAAIKNHPDKGGD 33 (315)
Q Consensus 1 y~vLgv~~~a~~~~ik~ayr~la~~~hPd~~~~ 33 (315)
|+||||+++|+.++||+|||+|+++||||++++
T Consensus 120 Y~vLgv~~~As~~eIKkAYRklal~~HPDK~~~ 152 (182)
T 1n4c_A 120 WKPVGMADLVTPEQVKKVYRKAVLVVHPDKATG 152 (182)
T ss_dssp CCCCCGGGGSSHHHHHHHHHHHHHHTCGGGGSS
T ss_pred hhcCCCCCCCCHHHHHHHHHHHHHHHCcCcCCC
Confidence 899999999999999999999999999999764
No 50
>1exk_A DNAJ protein; extended beta-hairpin, CXXCXGXG, zinc-binding motif, chaperone; NMR {Escherichia coli} SCOP: g.54.1.1
Probab=98.29 E-value=2.7e-07 Score=67.50 Aligned_cols=58 Identities=31% Similarity=0.769 Sum_probs=43.1
Q ss_pred ccccceeeEeeceeeEEccCCCCCCcccC------CceecCCCcCCceEEEEEecCCcceeEeeeeCCCCCCCceEeC
Q 021275 116 DLYNGTSKKLSLSRNVICTKCKGKGSKSG------ASMKCSGCQGSGMKVSIRHLGPSMIQQMQHPCNECKGTGETIN 187 (315)
Q Consensus 116 e~~~G~~~~~~~~~~~~C~~C~G~G~~~~------~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~~C~~C~G~G~~~~ 187 (315)
+.|.|.... .......|+.|+|+|.... ...+|+.|+|+| +.+..+|+.|+|.|.+..
T Consensus 15 ~~C~G~G~~-~~~~~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G-------------~~~~~~C~~C~G~G~~~~ 78 (79)
T 1exk_A 15 DVCHGSGAK-PGTQPQTCPTCHGSGQVQMRQGFFAVQQTCPHCQGRG-------------TLIKDPCNKCHGHGRVER 78 (79)
T ss_dssp GGGTTTSBC-SSSCCEECTTTTTSSEEEEEETTEEEEEECTTTTTSS-------------EECSSBCGGGTTSSEEEC
T ss_pred CCCcccccC-CCccCCCCCCCcCeEEEEEEcCCCEEeeECcCCCCcc-------------EECCCcCCCCCCeEEEee
Confidence 456666543 3344579999999998642 135799999999 345789999999998753
No 51
>2ctt_A DNAJ homolog subfamily A member 3; ZING finger, beta-hairpin, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.28 E-value=3.2e-07 Score=70.81 Aligned_cols=58 Identities=26% Similarity=0.638 Sum_probs=43.2
Q ss_pred ccccceeeEeeceeeEEccCCCCCCcccC------CceecCCCcCCceEEEEEecCCcceeEeeeeCCCCCCCceEeC
Q 021275 116 DLYNGTSKKLSLSRNVICTKCKGKGSKSG------ASMKCSGCQGSGMKVSIRHLGPSMIQQMQHPCNECKGTGETIN 187 (315)
Q Consensus 116 e~~~G~~~~~~~~~~~~C~~C~G~G~~~~------~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~~C~~C~G~G~~~~ 187 (315)
+.|.|...+ +......|+.|+|+|.... ...+|+.|+|+| +.+..+|+.|+|.|.+..
T Consensus 32 ~~C~G~G~~-~g~~~~~C~~C~G~G~~~~~~G~~~~~~~C~~C~G~G-------------~~i~~~C~~C~G~G~v~~ 95 (104)
T 2ctt_A 32 ERCNGKGNE-PGTKVQHCHYCGGSGMETINTGPFVMRSTCRRCGGRG-------------SIIISPCVVCRGAGQAKQ 95 (104)
T ss_dssp SSSSSSSSC-TTCCCEECSSSSSSCEEEEEETTEEEEEECSSSSSSS-------------EECSSCCSSSSSCSEECC
T ss_pred CCCcCCccC-CCCCCccCCCCCCCEEEEEEeCCEEEEEECCcCCCcc-------------eECCCcCCCCCCeeEEEE
Confidence 445665543 3334578999999997531 236799999999 456789999999999864
No 52
>3lcz_A YCZA, inhibitor of trap, regulated by T-box (Trp) seque; anti-trap, tryptophan RNA-binding attenuation PROT transcription attenuation; 2.06A {Bacillus licheniformis} PDB: 3ld0_A
Probab=97.71 E-value=6.6e-06 Score=55.23 Aligned_cols=30 Identities=33% Similarity=0.929 Sum_probs=19.0
Q ss_pred eeeeCCCCCCCceEeCCCCCCCccCCceEEEE
Q 021275 172 MQHPCNECKGTGETINDKDRCPQCKGEKVIQE 203 (315)
Q Consensus 172 ~~~~C~~C~G~G~~~~~~~~C~~C~G~g~~~~ 203 (315)
++.+|+.|+|+|.++. ++|+.|+|.|.+.+
T Consensus 8 ~~~~C~~C~GsG~~i~--~~C~~C~G~G~v~~ 37 (53)
T 3lcz_A 8 LETTCPNCNGSGREEP--EPCPKCLGKGVILT 37 (53)
T ss_dssp HEEECTTTTTSCEETT--EECTTTTTSSEEEC
T ss_pred eeccCcCCcccccCCC--CcCCCCCCcEEEEE
Confidence 4566666666666655 66666666666544
No 53
>3lcz_A YCZA, inhibitor of trap, regulated by T-box (Trp) seque; anti-trap, tryptophan RNA-binding attenuation PROT transcription attenuation; 2.06A {Bacillus licheniformis} PDB: 3ld0_A
Probab=97.51 E-value=5.6e-05 Score=50.65 Aligned_cols=14 Identities=36% Similarity=1.013 Sum_probs=7.4
Q ss_pred eeeCCCCCCCceEe
Q 021275 173 QHPCNECKGTGETI 186 (315)
Q Consensus 173 ~~~C~~C~G~G~~~ 186 (315)
..+|+.|+|+|.+.
T Consensus 23 ~~~C~~C~G~G~v~ 36 (53)
T 3lcz_A 23 PEPCPKCLGKGVIL 36 (53)
T ss_dssp TEECTTTTTSSEEE
T ss_pred CCcCCCCCCcEEEE
Confidence 45555555555543
No 54
>2bx9_A Anti-trap, AT, tryptophan RNA-binding attenuator protein-inhibit protein; transcription regulation; 2.80A {Bacillus subtilis} PDB: 2ko8_A* 2zp8_E* 2zp9_C*
Probab=97.38 E-value=0.0001 Score=49.37 Aligned_cols=25 Identities=40% Similarity=1.039 Sum_probs=12.8
Q ss_pred EEccCCCCCCcccCCceecCCCcCCce
Q 021275 131 VICTKCKGKGSKSGASMKCSGCQGSGM 157 (315)
Q Consensus 131 ~~C~~C~G~G~~~~~~~~C~~C~G~G~ 157 (315)
..|+.|+|+|.... .+|+.|+|+|.
T Consensus 10 ~~C~~C~GsG~~~~--~~C~~C~G~G~ 34 (53)
T 2bx9_A 10 VACPKCERAGEIEG--TPCPACSGKGV 34 (53)
T ss_dssp EECTTTTTSSEETT--EECTTTTTSSE
T ss_pred ccCCCCcceeccCC--CCCccCCCCcc
Confidence 45666666655432 34555555553
No 55
>3pmq_A Decaheme cytochrome C MTRF; greek KEY, C type cytochrome, outer membrane, electron trans; HET: HEC; 3.20A {Shewanella oneidensis}
Probab=97.34 E-value=3.1e-06 Score=84.76 Aligned_cols=50 Identities=18% Similarity=0.244 Sum_probs=45.0
Q ss_pred eeeeeeeeeccccceeeEeeceeeEEccCCCCCCcccCC----ceecCCCcCCc
Q 021275 107 IHPLKVSLEDLYNGTSKKLSLSRNVICTKCKGKGSKSGA----SMKCSGCQGSG 156 (315)
Q Consensus 107 ~~~~~~~l~e~~~G~~~~~~~~~~~~C~~C~G~G~~~~~----~~~C~~C~G~G 156 (315)
...+.++|+|+..|..+++.+.+...|..|+|+|...+. ..+|+.|+|+.
T Consensus 168 ~~~l~i~feeA~~G~~k~i~v~~~~~C~tCHGsGA~~Gt~~~~~~tC~tCHGs~ 221 (669)
T 3pmq_A 168 ITNQHYDWQSSGNMLAYTRNLVSIDTCNSCHSNLAFHGGRYNQVETCVTCHNSK 221 (669)
T ss_dssp SCCCEEEEECSSSSCCCCCCCCCSHHHHHHHSSCCTTTTTSCSSSCSTTTSSTT
T ss_pred eEEEEEEhHHhhCCCceEEEeccCCcCCCCCCCCCcCCccCcCCccCCCCCCCc
Confidence 457899999999999999999999999999999998764 46899999993
No 56
>2bx9_A Anti-trap, AT, tryptophan RNA-binding attenuator protein-inhibit protein; transcription regulation; 2.80A {Bacillus subtilis} PDB: 2ko8_A* 2zp8_E* 2zp9_C*
Probab=96.90 E-value=0.00042 Score=46.34 Aligned_cols=27 Identities=30% Similarity=0.840 Sum_probs=17.6
Q ss_pred eecCCCcCCceEEEEEecCCcceeEeeeeCCCCCCCceEe
Q 021275 147 MKCSGCQGSGMKVSIRHLGPSMIQQMQHPCNECKGTGETI 186 (315)
Q Consensus 147 ~~C~~C~G~G~~~~~~~~~~g~~~~~~~~C~~C~G~G~~~ 186 (315)
.+|+.|+|+|. .+..+|+.|+|.|.++
T Consensus 10 ~~C~~C~GsG~-------------~~~~~C~~C~G~G~v~ 36 (53)
T 2bx9_A 10 VACPKCERAGE-------------IEGTPCPACSGKGVIL 36 (53)
T ss_dssp EECTTTTTSSE-------------ETTEECTTTTTSSEEE
T ss_pred ccCCCCcceec-------------cCCCCCccCCCCccEE
Confidence 46777777773 2345677777777654
No 57
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=95.29 E-value=0.011 Score=54.80 Aligned_cols=34 Identities=32% Similarity=0.539 Sum_probs=31.5
Q ss_pred CeeeCCCCCCCHHHHHHHHHHHHHHhCCCCCCCH
Q 021275 1 MRFSESRKNASQDDLKKAYRKAAIKNHPDKGGDP 34 (315)
Q Consensus 1 y~vLgv~~~a~~~~ik~ayr~la~~~hPd~~~~~ 34 (315)
|.+||+.+.++.++|+++|+++++++|||+.+.+
T Consensus 385 y~~lg~~~~~~~~~~~~~y~~~~l~~~pd~~~~~ 418 (450)
T 2y4t_A 385 YKILGVKRNAKKQEIIKAYRKLALQWHPDNFQNE 418 (450)
T ss_dssp GGGSCSSTTCCTTHHHHHHHHHHHHSCGGGCCSH
T ss_pred HHHhCCCccCCHHHHHHHHHHHHHHhCCCCCCCc
Confidence 6789999999999999999999999999998764
No 58
>3pmq_A Decaheme cytochrome C MTRF; greek KEY, C type cytochrome, outer membrane, electron trans; HET: HEC; 3.20A {Shewanella oneidensis}
Probab=40.74 E-value=5.4 Score=39.94 Aligned_cols=47 Identities=13% Similarity=0.357 Sum_probs=29.7
Q ss_pred ceecCCCcCCceEEEEEecCCcceeEeeeeCCCCCCCceE-------------------eCCCCCCCccCCce
Q 021275 146 SMKCSGCQGSGMKVSIRHLGPSMIQQMQHPCNECKGTGET-------------------INDKDRCPQCKGEK 199 (315)
Q Consensus 146 ~~~C~~C~G~G~~~~~~~~~~g~~~~~~~~C~~C~G~G~~-------------------~~~~~~C~~C~G~g 199 (315)
..+|..|+|+|- -+|-...-..+|+.|+|.... ......|..|+...
T Consensus 191 ~~~C~tCHGsGA-------~~Gt~~~~~~tC~tCHGs~~~~~~~~~~~~~iH~iH~G~fP~~~~~C~~CH~~~ 256 (669)
T 3pmq_A 191 IDTCNSCHSNLA-------FHGGRYNQVETCVTCHNSKKVSNAADIFPQMIHSKHLTGFPQSISNCQTCHADN 256 (669)
T ss_dssp SHHHHHHHSSCC-------TTTTTSCSSSCSTTTSSTTTCCCSSCSHHHHHHHHTTSSCSSCTTCCTTTSCCC
T ss_pred CCcCCCCCCCCC-------cCCccCcCCccCCCCCCCcccCCccccccceeeeeeccCCCCccCcchhhcCCc
Confidence 367999999993 122101124689999998311 11236799999865
No 59
>2qkd_A Zinc finger protein ZPR1; helical hairpins, beta helix, anti-parrallel beta sheet, double straded anti-parallel beta helix, metal binding protein; 2.00A {Mus musculus}
Probab=40.72 E-value=40 Score=31.52 Aligned_cols=36 Identities=17% Similarity=0.353 Sum_probs=19.2
Q ss_pred eecCCCcCCceEEEEEecCC--cceeEeeeeCCCCCCC
Q 021275 147 MKCSGCQGSGMKVSIRHLGP--SMIQQMQHPCNECKGT 182 (315)
Q Consensus 147 ~~C~~C~G~G~~~~~~~~~~--g~~~~~~~~C~~C~G~ 182 (315)
..|+.|+..|........-| +-+..+...|+.|+=+
T Consensus 221 s~Cp~C~~~~~t~~~~~~IP~F~eViims~~C~~CGyr 258 (404)
T 2qkd_A 221 TNCPECNAPAQTNMKLVQIPHFKEVIIMATNCENCGHR 258 (404)
T ss_dssp ECCTTTCCTTCEEEEEECCTTSCCEEEEEEECSSSCCE
T ss_pred ccCccCCCccEEEEEEEeCCCCCcEEEEEEECCCCCCc
Confidence 34666666666433222222 3333456778888654
No 60
>2bx2_L Ribonuclease E, RNAse E; RNA-binding, RNA turnover, RNA processing, hydrolase, endonu nuclease; 2.85A {Escherichia coli} PDB: 2c0b_L 2c4r_L 2vmk_A 2vrt_A 1slj_A 1smx_A 1sn8_A
Probab=40.69 E-value=6.3 Score=38.19 Aligned_cols=28 Identities=36% Similarity=0.694 Sum_probs=18.0
Q ss_pred EEEecCCcceeEeeeeCCCCCCCceEeC
Q 021275 160 SIRHLGPSMIQQMQHPCNECKGTGETIN 187 (315)
Q Consensus 160 ~~~~~~~g~~~~~~~~C~~C~G~G~~~~ 187 (315)
.+.+..+.+...+..+|+.|.|+|.+.+
T Consensus 395 TRkR~r~sL~e~~~~~Cp~C~G~G~v~s 422 (517)
T 2bx2_L 395 SRQRLSPSLGESSHHVCPRCSGTGTVRD 422 (517)
T ss_dssp EECCCSCCHHHHHCCCCSSSSSSSCCCC
T ss_pred eecCcCcChhhhhcCcCCCcCCceeECC
Confidence 3444555555556678888888887654
No 61
>1ltl_A DNA replication initiator (CDC21/CDC54); HET: DNA; 3.00A {Methanothermobacterthermautotrophicus} SCOP: b.40.4.11
Probab=39.94 E-value=51 Score=28.88 Aligned_cols=17 Identities=0% Similarity=-0.035 Sum_probs=10.9
Q ss_pred CCCHHHHHHHHHHHHHH
Q 021275 9 NASQDDLKKAYRKAAIK 25 (315)
Q Consensus 9 ~a~~~~ik~ayr~la~~ 25 (315)
.++..+|++.|+...+.
T Consensus 8 ~~~~~~~~~~f~~Fl~~ 24 (279)
T 1ltl_A 8 TVDKSKTLTKFEEFFSL 24 (279)
T ss_dssp -CCHHHHHHHHHHHTTS
T ss_pred cCChHHHHHHHHHHhcc
Confidence 45677888877666544
No 62
>2kdx_A HYPA, hydrogenase/urease nickel incorporation protein HYPA; metallochaperone, metal-binding, metal- binding protein; NMR {Helicobacter pylori}
Probab=37.63 E-value=26 Score=26.60 Aligned_cols=40 Identities=10% Similarity=0.278 Sum_probs=21.6
Q ss_pred cccceeeEeec-eeeEEccCCCCCCcccCCce-ecCCCcCCc
Q 021275 117 LYNGTSKKLSL-SRNVICTKCKGKGSKSGASM-KCSGCQGSG 156 (315)
Q Consensus 117 ~~~G~~~~~~~-~~~~~C~~C~G~G~~~~~~~-~C~~C~G~G 156 (315)
.+.|+...+.. +....|..|.-.-....... .||.|++.-
T Consensus 59 ~~e~a~L~i~~~p~~~~C~~CG~~~e~~~~~~~~CP~Cgs~~ 100 (119)
T 2kdx_A 59 VCKDAILDIVDEKVELECKDCSHVFKPNALDYGVCEKCHSKN 100 (119)
T ss_dssp TTSSCCEEEEEECCEEECSSSSCEECSCCSTTCCCSSSSSCC
T ss_pred hhcCcEEEEEeccceEEcCCCCCEEeCCCCCCCcCccccCCC
Confidence 34454444432 23567888865433333345 677777664
No 63
>1cf7_A Protein (transcription factor E2F-4); E2F, winged-helix, DNA-binding domain, cell cycle, transcription/DNA complex; HET: DNA; 2.60A {Homo sapiens} SCOP: a.4.5.17
Probab=37.44 E-value=23 Score=24.82 Aligned_cols=45 Identities=27% Similarity=0.223 Sum_probs=33.2
Q ss_pred CCCCHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHhhcCCCccccccccc
Q 021275 8 KNASQDDLKKAYRKAAIKNHPDKGGDPEKFKELAQAYEVLSDPEKREIYDQY 59 (315)
Q Consensus 8 ~~a~~~~ik~ayr~la~~~hPd~~~~~~~f~~i~~Ay~~L~d~~~R~~YD~~ 59 (315)
++.|...+-+.|-++... +|+..-+ +++|.+.|.-.++|++||-.
T Consensus 8 ~~~SL~~lt~kFi~l~~~-~~~~~i~------l~~aa~~L~v~~kRRiYDI~ 52 (76)
T 1cf7_A 8 HEKSLGLLTTKFVSLLQE-AKDGVLD------LKLAADTLAVRQKRRIYDIT 52 (76)
T ss_dssp TTTCHHHHHHHHHHHHHH-SSTTEEE------HHHHHHHTTTCCTHHHHHHH
T ss_pred ccCcHHHHHHHHHHHHHh-CCCCcCc------HHHHHHHhCCccceehhhHH
Confidence 456788888889888765 4554322 78888888755799999964
No 64
>2qkd_A Zinc finger protein ZPR1; helical hairpins, beta helix, anti-parrallel beta sheet, double straded anti-parallel beta helix, metal binding protein; 2.00A {Mus musculus}
Probab=36.64 E-value=36 Score=31.77 Aligned_cols=36 Identities=19% Similarity=0.346 Sum_probs=21.3
Q ss_pred eecCCCcCCceEEEEEecCC--cceeEeeeeCCCCCCC
Q 021275 147 MKCSGCQGSGMKVSIRHLGP--SMIQQMQHPCNECKGT 182 (315)
Q Consensus 147 ~~C~~C~G~G~~~~~~~~~~--g~~~~~~~~C~~C~G~ 182 (315)
..|+.|+..|........-| +-+..+...|+.|+=+
T Consensus 13 s~Cp~C~~~g~t~~~~~~IP~F~eVii~Sf~C~~CGyr 50 (404)
T 2qkd_A 13 SLCMNCYRNGTTRLLLTKIPFFREIIVSSFSCEHCGWN 50 (404)
T ss_dssp EECTTTSSEEEEEEEEEEETTTEEEEEEEEECTTTCCE
T ss_pred ccCCCCCCCceEEEEEEcCCCCceEEEEEEECCCCCCc
Confidence 45888877776544333333 3333456788888655
No 65
>1uzc_A Hypothetical protein FLJ21157; nuclear protein, structure, transcription, phosphopeptide recognition, RNA polymerase II carboxyl- terminal domain; NMR {Homo sapiens} SCOP: a.159.2.1 PDB: 2kzg_A 2lks_A 2l9v_A
Probab=36.37 E-value=32 Score=23.76 Aligned_cols=52 Identities=15% Similarity=0.362 Sum_probs=29.5
Q ss_pred CCCCHHHHHHHHHHHHHHhCCCCCCCH-HHHHHHH--HHHhhcCC-Cccccccccc
Q 021275 8 KNASQDDLKKAYRKAAIKNHPDKGGDP-EKFKELA--QAYEVLSD-PEKREIYDQY 59 (315)
Q Consensus 8 ~~a~~~~ik~ayr~la~~~hPd~~~~~-~~f~~i~--~Ay~~L~d-~~~R~~YD~~ 59 (315)
.-+|.+|.+++|++|....+-+-...= ...+.|. .-|.+|.+ .++++.|+.|
T Consensus 10 ~~~t~eea~~~F~~LL~e~~V~~~~tWe~~~~~i~~DpRY~al~~~~eRk~~F~ey 65 (71)
T 1uzc_A 10 TWNTKEEAKQAFKELLKEKRVPSNASWEQAMKMIINDPRYSALAKLSEKKQAFNAY 65 (71)
T ss_dssp CCCSHHHHHHHHHHHHHHTTCCTTCCHHHHHHHHHTSGGGGGCSSHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHcCcCCCCCHHHHHHHHccCccccccCCHHHHHHHHHHH
Confidence 357899999999999998753322110 2222221 12556654 3455555554
No 66
>2cqn_A Formin-binding protein 3; FF domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.159.2.1
Probab=35.72 E-value=15 Score=25.92 Aligned_cols=51 Identities=18% Similarity=0.343 Sum_probs=36.6
Q ss_pred CCHHHHHHHHHHHHHHhCCCCCCCH------HHHHHHHHHHhhcCC-Cccccccccccc
Q 021275 10 ASQDDLKKAYRKAAIKNHPDKGGDP------EKFKELAQAYEVLSD-PEKREIYDQYGE 61 (315)
Q Consensus 10 a~~~~ik~ayr~la~~~hPd~~~~~------~~f~~i~~Ay~~L~d-~~~R~~YD~~g~ 61 (315)
.-...++.+|+.+.+...|...... .+|..-. +|..+.+ .+++.+|+.|-.
T Consensus 6 ~r~rrl~~~F~~mLk~~~p~I~~~s~We~vr~~~e~~~-~fkav~~E~eR~~lFeeYi~ 63 (77)
T 2cqn_A 6 SGMKRKESAFKSMLKQAAPPIELDAVWEDIRERFVKEP-AFEDITLESERKRIFKDFMH 63 (77)
T ss_dssp CSHHHHHHHHHHHHHTCSSCCCTTCCHHHHHHHHTTSH-HHHTCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHccCH-HHHhcCCHHHHHHHHHHHHH
Confidence 3456789999999888878776653 3454433 7888876 577788888753
No 67
>1ckt_A High mobility group 1 protein; high-mobility group domain, BENT DNA, protein-drug-DNA compl regulation-DNA complex; HET: DNA 5IU; 2.50A {Rattus norvegicus} SCOP: a.21.1.1 PDB: 1j3x_A
Probab=35.60 E-value=46 Score=22.18 Aligned_cols=42 Identities=26% Similarity=0.376 Sum_probs=30.6
Q ss_pred HHHHHHHHHhCCCCCCC-HHHHHHHHHHHhhcCCCcccccccc
Q 021275 17 KAYRKAAIKNHPDKGGD-PEKFKELAQAYEVLSDPEKREIYDQ 58 (315)
Q Consensus 17 ~ayr~la~~~hPd~~~~-~~~f~~i~~Ay~~L~d~~~R~~YD~ 58 (315)
+..|...+.-||+...+ .+..+.|.+.|..|++.+|....+.
T Consensus 14 ~~~r~~~~~~~p~~~~~~~eisk~lg~~Wk~ls~~eK~~y~~~ 56 (71)
T 1ckt_A 14 QTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDM 56 (71)
T ss_dssp HHHHHHHHHHCTTCCCCHHHHHHHHHHHHHTCCTTTSHHHHHH
T ss_pred HHHHHHHHHHCCCCCCcHHHHHHHHHHHHhhCCHHHHHHHHHH
Confidence 34555566779997642 4888999999999998877655443
No 68
>1qo8_A Flavocytochrome C3 fumarate reductase; oxidoreductase; HET: HEM FAD; 2.15A {Shewanella frigidimarina} SCOP: a.138.1.3 c.3.1.4 d.168.1.1
Probab=34.99 E-value=7.1 Score=37.91 Aligned_cols=66 Identities=21% Similarity=0.482 Sum_probs=33.6
Q ss_pred EccCCCCCCcccC-----CceecCCCcCCceEEEEE--ecCCcceeEeeeeCCCCCCCceEeCCCCCCCccCCce
Q 021275 132 ICTKCKGKGSKSG-----ASMKCSGCQGSGMKVSIR--HLGPSMIQQMQHPCNECKGTGETINDKDRCPQCKGEK 199 (315)
Q Consensus 132 ~C~~C~G~G~~~~-----~~~~C~~C~G~G~~~~~~--~~~~g~~~~~~~~C~~C~G~G~~~~~~~~C~~C~G~g 199 (315)
.|..||+.+.... ....|-+|++.-..+... ...+-....-...|..||-.-.. ....|..|+...
T Consensus 14 ~C~~CH~~~~~~~~~~~~~~~~C~~CH~~~~~~~~~~~~~~~h~~~~~~~~C~~CH~~h~~--~~~~c~~ch~~~ 86 (566)
T 1qo8_A 14 SCQSCHAKPIKVTDSETHENAQCKSCHGEYAELANDKLQFDPHNSHLGDINCTSCHKGHEE--PKFYCNECHSFD 86 (566)
T ss_dssp CGGGTSCSSCCCCTTCHHHHHHHHHHHCCHHHHCCSSSSSCTTSSTTCSCCGGGTSCSSSC--CCCGGGGTCCCC
T ss_pred ChhhhCCCccccccccCccCCHHhhhCcCHHHHhhccccCCcchhcCCCCCchhhCcCCcC--cCchhhhhcCCC
Confidence 6888888765321 123588888752111000 00000000013578888865433 236788887653
No 69
>2vl6_A SSO MCM N-TER, minichromosome maintenance protein MCM; helicase, hydrolase, zinc-finger, ATP-binding, DNA-BIND ssDNA binding; 2.8A {Sulfolobus solfataricus}
Probab=31.68 E-value=1.9e+02 Score=24.74 Aligned_cols=14 Identities=7% Similarity=0.131 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHhC
Q 021275 14 DLKKAYRKAAIKNH 27 (315)
Q Consensus 14 ~ik~ayr~la~~~h 27 (315)
+++++|+...+.|.
T Consensus 9 ~~~~~f~~Fl~~f~ 22 (268)
T 2vl6_A 9 DYRDVFIEFLTTFK 22 (268)
T ss_dssp CHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHhhh
Confidence 67788888877765
No 70
>2d7l_A WD repeat and HMG-box DNA binding protein 1; high mobility group box domain, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=29.90 E-value=16 Score=25.84 Aligned_cols=44 Identities=20% Similarity=0.306 Sum_probs=33.8
Q ss_pred HHHHHHHHHHhCCCCCCCHHHHHHHHHHHhhcCCCccccccccc
Q 021275 16 KKAYRKAAIKNHPDKGGDPEKFKELAQAYEVLSDPEKREIYDQY 59 (315)
Q Consensus 16 k~ayr~la~~~hPd~~~~~~~f~~i~~Ay~~L~d~~~R~~YD~~ 59 (315)
-+.+|...+.-||+.....+..+.+.+.|..|++.+|....|..
T Consensus 17 ~~e~R~~ik~~~P~~~~~~eisK~lge~Wk~ls~eeK~~y~~~A 60 (81)
T 2d7l_A 17 LEENRSNILSDNPDFSDEADIIKEGMIRFRVLSTEERKVWANKA 60 (81)
T ss_dssp HHHHHHHHHHHCTTCCSHHHHHHHHHHHHSSSCHHHHHHHHHHT
T ss_pred HHHHHHHHHHHCCCCchhHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 45677778888999862348899999999999988777655553
No 71
>3a43_A HYPD, hydrogenase nickel incorporation protein HYPA; [NIFE] hydrogenase maturation, zinc-finger, nickel binding, metal-binding; HET: FME; 2.30A {Pyrococcus kodakaraensis} PDB: 3a44_A*
Probab=29.30 E-value=47 Score=25.98 Aligned_cols=25 Identities=12% Similarity=0.194 Sum_probs=12.8
Q ss_pred ccceeeEeec-eeeEEccCCCCCCcc
Q 021275 118 YNGTSKKLSL-SRNVICTKCKGKGSK 142 (315)
Q Consensus 118 ~~G~~~~~~~-~~~~~C~~C~G~G~~ 142 (315)
+.|+...+.. .-...|..|+-....
T Consensus 57 ~e~A~L~i~~~p~~~~C~~CG~~~~~ 82 (139)
T 3a43_A 57 AEGAEIEFVEEEAVFKCRNCNYEWKL 82 (139)
T ss_dssp TTTCEEEEEEECCEEEETTTCCEEEG
T ss_pred ccCCEEEEEecCCcEECCCCCCEEec
Confidence 3444433332 235678888655443
No 72
>1y0p_A Fumarate reductase flavoprotein subunit; flavocytochrome, mesaconate, oxidoreductase; HET: HEM FAD; 1.50A {Shewanella frigidimarina} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 PDB: 1qjd_A* 2b7s_A* 1jry_A* 2b7r_A* 1ksu_A* 1jrz_A* 1jrx_A* 1m64_A* 1p2h_A* 1p2e_A* 1kss_A* 1e39_A* 1q9i_A* 1lj1_A*
Probab=29.24 E-value=8.3 Score=37.46 Aligned_cols=65 Identities=18% Similarity=0.469 Sum_probs=33.1
Q ss_pred EccCCCCCCcccC------CceecCCCcCCceEEEEE----ecCCcceeE-eeeeCCCCCCCceEeCCCCCCCccCCc
Q 021275 132 ICTKCKGKGSKSG------ASMKCSGCQGSGMKVSIR----HLGPSMIQQ-MQHPCNECKGTGETINDKDRCPQCKGE 198 (315)
Q Consensus 132 ~C~~C~G~G~~~~------~~~~C~~C~G~G~~~~~~----~~~~g~~~~-~~~~C~~C~G~G~~~~~~~~C~~C~G~ 198 (315)
.|..||+...... ....|-.|+......... ...+-.... -...|..||..=.. ....|..|+..
T Consensus 13 ~C~~CH~~~~~~~~~~~~~~~~~C~~CH~~~~~~~~~~~~~~~~~h~~H~~~~~~C~~CH~~h~~--~~~~C~~CH~~ 88 (571)
T 1y0p_A 13 ECDSCHTPDGELSNDSLTYENTQCVSCHGTLAEVAETTKHEHYNAHASHFPGEVACTSCHSAHEK--SMVYCDSCHSF 88 (571)
T ss_dssp CGGGTSCTTCCCCCTTCHHHHHHHHHHHCCHHHHHTTSCCSSCCTTSCSCCSCCCGGGTCCSSSC--BCCGGGGTCCC
T ss_pred ChhhcCCCcccccccccccccchhhhhCcChhhcccccccccCCccccccCCCCCccccCccccC--CCccccccChh
Confidence 6889998764321 124588888753100000 000000000 13579999876332 23678888864
No 73
>3nyb_B Protein AIR2; polya RNA polymerase, zinc knuckle protein, RNA surveillance binds to TRF4P/AIR2P heterodimer; 2.70A {Saccharomyces cerevisiae}
Probab=29.22 E-value=24 Score=25.23 Aligned_cols=53 Identities=23% Similarity=0.290 Sum_probs=27.7
Q ss_pred eeEEccCCCCCCcccCC---ceecCCCcCCceEEEEEecCCcceeEeeeeCCCCCCCceEe
Q 021275 129 RNVICTKCKGKGSKSGA---SMKCSGCQGSGMKVSIRHLGPSMIQQMQHPCNECKGTGETI 186 (315)
Q Consensus 129 ~~~~C~~C~G~G~~~~~---~~~C~~C~G~G~~~~~~~~~~g~~~~~~~~C~~C~G~G~~~ 186 (315)
+.+.|..|+..|-.... ...|-.|...|.+....... .....|-.|...|.+.
T Consensus 4 k~~~C~~Cg~~GH~~~~Cp~~~rcY~c~~~gh~~~~c~~p-----~~~~~CYnCG~~GH~~ 59 (83)
T 3nyb_B 4 KKVQCTLCKSKKHSKERCPSIWRAYILVDDNEKAKPKVLP-----FHTIYCYNCGGKGHFG 59 (83)
T ss_dssp ---CCSSSCCSSSCGGGCGGGTCCCCBC------------------CCCBCSSSSCBSSCG
T ss_pred ccCCCCCCCCCCCccccCCCcccccccccCCcccccccCC-----CCCCeecccCCCCcCc
Confidence 45779999998876542 24588898888643211111 1246799999888864
No 74
>2b7e_A PRE-mRNA processing protein PRP40; structural protein; NMR {Saccharomyces cerevisiae} SCOP: a.159.2.1
Probab=28.63 E-value=25 Score=23.51 Aligned_cols=47 Identities=23% Similarity=0.417 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHHhCCCCCCC-HHHHHHH---HHHHhhcCC-Cc-cccccccc
Q 021275 13 DDLKKAYRKAAIKNHPDKGGD-PEKFKEL---AQAYEVLSD-PE-KREIYDQY 59 (315)
Q Consensus 13 ~~ik~ayr~la~~~hPd~~~~-~~~f~~i---~~Ay~~L~d-~~-~R~~YD~~ 59 (315)
+|..+||.+|.+...=|..-+ ....+.| .--|.+|.| |. +++.|+.|
T Consensus 3 eEae~aF~~lL~~~~V~s~wsweqamr~i~i~DPrY~al~d~~~eRK~~Fe~Y 55 (59)
T 2b7e_A 3 MEAEKEFITMLKENQVDSTWSFSRIISELGTRDPRYWMVDDDPLWKKEMFEKY 55 (59)
T ss_dssp THHHHHHHHHHHHTTCCSSCCHHHHHHHHHHHCTHHHHSCCCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHcCCCCCCcHHHHHHHhccCCCccccccCCHHHHHHHHHHH
Confidence 578899999998775443222 1556666 345889996 54 66677765
No 75
>1i11_A Transcription factor SOX-5; HMG BOX, DNA bending, DNA recognition, chromatin, DNA binding protein, DNA sequence specific, testis determining.; NMR {Mus musculus} SCOP: a.21.1.1
Probab=28.04 E-value=24 Score=24.53 Aligned_cols=42 Identities=21% Similarity=0.410 Sum_probs=30.8
Q ss_pred HHHHHHHHHHhCCCCCCCHHHHHHHHHHHhhcCCCcccccccc
Q 021275 16 KKAYRKAAIKNHPDKGGDPEKFKELAQAYEVLSDPEKREIYDQ 58 (315)
Q Consensus 16 k~ayr~la~~~hPd~~~~~~~f~~i~~Ay~~L~d~~~R~~YD~ 58 (315)
.+.+|...+.-||+.. ..+..+.|.+.|..|++.++...++.
T Consensus 16 ~~~~r~~~~~~~p~~~-~~eisk~lg~~Wk~ls~eeK~~y~~~ 57 (81)
T 1i11_A 16 AKDERRKILQAFPDMH-NSNISKILGSRWKAMTNLEKQPYYEE 57 (81)
T ss_dssp HHHHHHHHHTTCSSCC-HHHHHHHHHHHHTTSCSGGGHHHHHH
T ss_pred HHHHHHHHHHHCCCCC-HHHHHHHHHhhhhhCCHHHHHHHHHH
Confidence 3456666677788864 33888899999999998777665554
No 76
>1gmu_A UREE; metallochaperone; 1.5A {Klebsiella aerogenes} SCOP: b.107.1.1 d.58.38.1 PDB: 1gmw_A 1gmw_D 1gmv_A
Probab=27.56 E-value=1.2e+02 Score=23.72 Aligned_cols=46 Identities=17% Similarity=0.134 Sum_probs=38.3
Q ss_pred EEEecCHHHHhCCCEEEEeCCCCCeEEEecCCCceeeCCcEEEEeCC
Q 021275 259 VEHTLSLTEALCGFQFVITHLDGRQLLIKSQPGEVVKPGKYNWMDVS 305 (315)
Q Consensus 259 ~~~~I~l~~al~G~~~~v~tldG~~~~i~~~~~~v~~pg~~~~i~~~ 305 (315)
-++.++..+. .-....+.|-+|+.+-|.+|.+.++++|++....+.
T Consensus 16 ~~v~L~~~~r-~k~R~r~~t~~G~e~~l~L~r~~~L~dGDvL~~ddg 61 (143)
T 1gmu_A 16 ASVTLPIDVR-VKSRVKVTLNDGRDAGLLLPRGLLLRGGDVLSNEEG 61 (143)
T ss_dssp EEEEECHHHH-TCSEEEEECTTSCEEEEECCSSCCCCTTCEEECTTS
T ss_pred eEEEeCHHHH-hcceEEEECCCCCEEEEECCCCcccCCCCEEEECCC
Confidence 4577888887 445678899999999999999999999999988764
No 77
>1sif_A Ubiquitin; hydrophobic mutants, folding, stability, structural protein; 2.18A {Homo sapiens} SCOP: d.15.1.1
Probab=27.45 E-value=43 Score=23.51 Aligned_cols=25 Identities=28% Similarity=0.631 Sum_probs=18.4
Q ss_pred HhCCCEEEEeCCCCCeEEEecCCCc
Q 021275 268 ALCGFQFVITHLDGRQLLIKSQPGE 292 (315)
Q Consensus 268 al~G~~~~v~tldG~~~~i~~~~~~ 292 (315)
-|.|..+.|.+++|+.+.|.+++.+
T Consensus 6 ~~~~~~i~v~~~~G~~~~l~v~~~~ 30 (88)
T 1sif_A 6 HLQGLQLFIKTLTGKTFTVEMEPSD 30 (88)
T ss_dssp ----CEEEEEETTSCEEEEECCTTS
T ss_pred cccceEEEEEeCCCCEEEEEECCCC
Confidence 3678999999999998888887665
No 78
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=27.30 E-value=26 Score=36.04 Aligned_cols=33 Identities=30% Similarity=0.701 Sum_probs=22.2
Q ss_pred ecCCCcCCceEEEEEecCCcceeEeeeeCCCCCCCce
Q 021275 148 KCSGCQGSGMKVSIRHLGPSMIQQMQHPCNECKGTGE 184 (315)
Q Consensus 148 ~C~~C~G~G~~~~~~~~~~g~~~~~~~~C~~C~G~G~ 184 (315)
.|+.|.|.|.+....++ +..+..+|+.|+|+.+
T Consensus 640 ~c~~c~g~G~~~~~~~f----~~~v~~~c~~c~G~r~ 672 (842)
T 2vf7_A 640 RCEHCQGEGWVMVELLF----LPSVYAPCPVCHGTRY 672 (842)
T ss_dssp BCTTTTTCSEEEETTCS----SSCEEEECTTTTTCCB
T ss_pred ccccccCCCccchhhhc----CCccceecccccCccc
Confidence 49999999965432222 2235678999988864
No 79
>2jrp_A Putative cytoplasmic protein; two-zinc binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium LT2}
Probab=27.24 E-value=1.2e+02 Score=21.47 Aligned_cols=24 Identities=21% Similarity=0.703 Sum_probs=11.0
Q ss_pred EEccCCCCCCcccCCceecCCCcC
Q 021275 131 VICTKCKGKGSKSGASMKCSGCQG 154 (315)
Q Consensus 131 ~~C~~C~G~G~~~~~~~~C~~C~G 154 (315)
..||.|+-.=...+....|..|+.
T Consensus 3 ~~CP~C~~~l~~~~~~~~C~~C~~ 26 (81)
T 2jrp_A 3 ITCPVCHHALERNGDTAHCETCAK 26 (81)
T ss_dssp CCCSSSCSCCEECSSEEECTTTCC
T ss_pred CCCCCCCCccccCCCceECccccc
Confidence 356666643222222334666654
No 80
>1ear_A Urease accessory protein UREE; chaperone, putative NI-chaperone, urease operon; 1.7A {Bacillus pasteurii} SCOP: b.107.1.1 d.58.38.1 PDB: 1eb0_A
Probab=26.53 E-value=1.3e+02 Score=23.68 Aligned_cols=47 Identities=9% Similarity=0.013 Sum_probs=38.6
Q ss_pred EEEEecCHHHHhCCCEEEEeCCCCCeEEEecCCCceeeCCcEEEEeCC
Q 021275 258 FVEHTLSLTEALCGFQFVITHLDGRQLLIKSQPGEVVKPGKYNWMDVS 305 (315)
Q Consensus 258 ~~~~~I~l~~al~G~~~~v~tldG~~~~i~~~~~~v~~pg~~~~i~~~ 305 (315)
.-++.++..+. .=....+.|-+|+.+-|.+|.+.++++|++......
T Consensus 20 ~d~v~L~~~~r-~k~R~r~~t~~G~e~~l~L~r~~~L~dGDvL~~ddg 66 (147)
T 1ear_A 20 VDWLEVEWEDL-NKRILRKETENGTDIAIKLENSGTLRYGDVLYESDD 66 (147)
T ss_dssp EEEEEECGGGG-GCSEEEEECTTCCEEEEECSSCCCCCTTEEEEECSS
T ss_pred ceEEEeCHHHH-hcceeEEECCCCCEEEEECCCCcccCCCCEEEECCC
Confidence 35578888776 444678899999999999999999999999988863
No 81
>1wz6_A HMG-box transcription factor BBX; bobby SOX homolog, HMG_BOX domain, structural genomics, NPPSFA, riken structural genomics/proteomics initiative; NMR {Mus musculus}
Probab=26.41 E-value=29 Score=24.12 Aligned_cols=42 Identities=29% Similarity=0.278 Sum_probs=31.2
Q ss_pred HHHHHHHHHHhCCCCCCCHHHHHHHHHHHhhcCCCcccccccc
Q 021275 16 KKAYRKAAIKNHPDKGGDPEKFKELAQAYEVLSDPEKREIYDQ 58 (315)
Q Consensus 16 k~ayr~la~~~hPd~~~~~~~f~~i~~Ay~~L~d~~~R~~YD~ 58 (315)
.+.+|...+.-||+.... +..+.|.+.|..|++.+|....|.
T Consensus 19 ~~~~r~~~~~~~p~~~~~-eisk~lg~~Wk~ls~~eK~~y~~~ 60 (82)
T 1wz6_A 19 CKRHRSLVRQEHPRLDNR-GATKILADWWAVLDPKEKQKYTDM 60 (82)
T ss_dssp HHHHHHHHHHHCSSSCTT-HHHHHHHHHHHTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCCHH-HHHHHHHHHHhhCCHHHHHHHHHH
Confidence 456677777789986543 888899999999997766554454
No 82
>1hry_A Human SRY; DNA, DNA-binding protein, DNA binding protein/DNA complex; HET: DNA; NMR {Homo sapiens} SCOP: a.21.1.1 PDB: 1hrz_A*
Probab=26.19 E-value=30 Score=23.60 Aligned_cols=42 Identities=19% Similarity=0.375 Sum_probs=30.5
Q ss_pred HHHHHHHHHHhCCCCCCCHHHHHHHHHHHhhcCCCcccccccc
Q 021275 16 KKAYRKAAIKNHPDKGGDPEKFKELAQAYEVLSDPEKREIYDQ 58 (315)
Q Consensus 16 k~ayr~la~~~hPd~~~~~~~f~~i~~Ay~~L~d~~~R~~YD~ 58 (315)
.+.+|...+.-||+.... +..+.|.+.|..|++.+|....+.
T Consensus 16 ~~~~r~~~~~~~p~~~~~-eisk~lg~~Wk~ls~~eK~~y~~~ 57 (76)
T 1hry_A 16 SRDQRRKMALENPRMRNS-EISKQLGYQWKMLTEAEKWPFFQE 57 (76)
T ss_dssp HHHHHHHHHHHCSCCSSS-HHHHHHHHHHHTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHCcCCCHH-HHHHHHHhHHHhCCHHHHHHHHHH
Confidence 455666677789987543 788899999999987666554443
No 83
>1ny9_A Transcriptional activator TIPA-S; all alpha, globin like; NMR {Streptomyces lividans} SCOP: a.181.1.1
Probab=25.69 E-value=64 Score=24.99 Aligned_cols=53 Identities=21% Similarity=0.155 Sum_probs=34.9
Q ss_pred CCCCCCCH-HHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHhhcCCCccccccccccc
Q 021275 5 ESRKNASQ-DDLKKAYRKAAIKNHPDKGGDPEKFKELAQAYEVLSDPEKREIYDQYGE 61 (315)
Q Consensus 5 gv~~~a~~-~~ik~ayr~la~~~hPd~~~~~~~f~~i~~Ay~~L~d~~~R~~YD~~g~ 61 (315)
|++++... .++-+.++.+...+.++. +++.|..|.+-|. .||.-++.||++|.
T Consensus 71 g~~p~s~eaq~l~~~h~~~l~~~~~~~--s~e~~~~L~~mYv--~D~rF~~~~d~~~~ 124 (143)
T 1ny9_A 71 GEPADSEGAMDAAEDHRQGIARNHYDC--GYEMHTCLGEMYV--SDERFTRNIDAAKP 124 (143)
T ss_dssp TCCTTCHHHHHHHHHHHHHHHHHSSCC--CHHHHHHHHHHTT--STHHHHHHHGGGST
T ss_pred CCCCCCHHHHHHHHHHHHHHHHhCCCC--CHHHHHHHHHHHh--cCHHHHHhHcccCh
Confidence 44444432 346666776654544443 5588888888876 78888899998864
No 84
>3jt0_A Lamin-B1; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG, HR5546A, LMNB1_human; 2.39A {Homo sapiens}
Probab=25.53 E-value=80 Score=24.93 Aligned_cols=38 Identities=13% Similarity=0.202 Sum_probs=27.5
Q ss_pred HhCCCEEEEeCCCCCeEEEecCCCceeeCCcEEEEeCCC
Q 021275 268 ALCGFQFVITHLDGRQLLIKSQPGEVVKPGKYNWMDVSL 306 (315)
Q Consensus 268 al~G~~~~v~tldG~~~~i~~~~~~v~~pg~~~~i~~~~ 306 (315)
.|-|+.+. ...+|+.+..+.|++.+++||...+|=.+|
T Consensus 51 ~LgGW~L~-r~v~g~~~~y~FP~~~~L~pg~~VtVwa~g 88 (144)
T 3jt0_A 51 PMGGWEMI-RKIGDTSVSYKYTSRYVLKAGQTVTIWAAN 88 (144)
T ss_dssp ECTTCEEE-EEETTEEEEEECCTTCEECTTCEEEEEETT
T ss_pred ecCCcEEE-EEeCCCceEEEcCCCcEECCCCEEEEEECC
Confidence 45566665 445776666888889999999988887644
No 85
>3nm9_A HMG-D, high mobility group protein D; DNA bending, non-sequence-specific, HMG chromosomal protein; HET: DNA; 2.85A {Drosophila melanogaster} SCOP: a.21.1.1 PDB: 1e7j_A* 1hma_A 1qrv_A*
Probab=25.05 E-value=56 Score=22.05 Aligned_cols=38 Identities=13% Similarity=0.237 Sum_probs=28.5
Q ss_pred HHHHHHHHHHhCCCCCCCHHHHHHHHHHHhhcCCCccccccc
Q 021275 16 KKAYRKAAIKNHPDKGGDPEKFKELAQAYEVLSDPEKREIYD 57 (315)
Q Consensus 16 k~ayr~la~~~hPd~~~~~~~f~~i~~Ay~~L~d~~~R~~YD 57 (315)
.+.+|...+.-||+... .+..+.|.+.|..|++ |+.|.
T Consensus 15 ~~~~r~~~~~~~p~~~~-~eisk~lg~~Wk~ls~---K~~y~ 52 (73)
T 3nm9_A 15 LNSARESIKRENPGIKV-TEVAKRGGELWRAMKD---KSEWE 52 (73)
T ss_dssp HHHHHHHHHHHSSSCCH-HHHHHHHHHHHHHCSC---CHHHH
T ss_pred HHHHHHHHHHHCCCCCH-HHHHHHHHHHHHcCCc---hHHHH
Confidence 45566777788998753 4888999999999987 55554
No 86
>4a3n_A Transcription factor SOX-17; 2.40A {Homo sapiens} SCOP: a.21.1.0
Probab=25.00 E-value=17 Score=24.46 Aligned_cols=42 Identities=29% Similarity=0.393 Sum_probs=30.9
Q ss_pred HHHHHHHHHHhCCCCCCCHHHHHHHHHHHhhcCCCcccccccc
Q 021275 16 KKAYRKAAIKNHPDKGGDPEKFKELAQAYEVLSDPEKREIYDQ 58 (315)
Q Consensus 16 k~ayr~la~~~hPd~~~~~~~f~~i~~Ay~~L~d~~~R~~YD~ 58 (315)
.+.+|...+..||+.. ..+..+.|.+.|..|++.+|....|.
T Consensus 14 ~~~~r~~~~~~~p~~~-~~eisk~lg~~Wk~ls~~eK~~y~~~ 55 (71)
T 4a3n_A 14 AKDERKRLAQQNPDLH-NAELSKMLGKSWKALTLAEKRPFVEE 55 (71)
T ss_dssp HHHHHHHHHTTCTTSC-HHHHHHHHHHHHHHSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 4566777778888875 33788899999999997776554443
No 87
>2crj_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; structural DNA-binding protein BRAF35, DNA-bending; NMR {Mus musculus}
Probab=24.71 E-value=34 Score=24.47 Aligned_cols=42 Identities=29% Similarity=0.343 Sum_probs=31.5
Q ss_pred HHHHHHHHHHhCCCCCCCHHHHHHHHHHHhhcCCCcccccccc
Q 021275 16 KKAYRKAAIKNHPDKGGDPEKFKELAQAYEVLSDPEKREIYDQ 58 (315)
Q Consensus 16 k~ayr~la~~~hPd~~~~~~~f~~i~~Ay~~L~d~~~R~~YD~ 58 (315)
.+.+|...+.-||+.. ..+..+.|.+.|..|++.+|....+.
T Consensus 19 ~~~~r~~~~~~~p~~~-~~eisk~lg~~Wk~ls~eeK~~Y~~~ 60 (92)
T 2crj_A 19 LNERREQIRTRHPDLP-FPEITKMLGAEWSKLQPAEKQRYLDE 60 (92)
T ss_dssp HHHHHHHHHHHCTTCC-HHHHHHHHHHHHHTCCTTHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 4556666777889865 33888899999999998877665554
No 88
>1hme_A High mobility group protein fragment-B; DNA-binding; NMR {Rattus norvegicus} SCOP: a.21.1.1 PDB: 1hmf_A 1nhm_A 1nhn_A 1hsm_A 1hsn_A 1j3c_A 1j3d_A 2yqi_A
Probab=23.95 E-value=38 Score=23.08 Aligned_cols=42 Identities=17% Similarity=0.224 Sum_probs=30.1
Q ss_pred HHHHHHHHHHhCCCCCCCHHHHHHHHHHHhhcCCCcccccccc
Q 021275 16 KKAYRKAAIKNHPDKGGDPEKFKELAQAYEVLSDPEKREIYDQ 58 (315)
Q Consensus 16 k~ayr~la~~~hPd~~~~~~~f~~i~~Ay~~L~d~~~R~~YD~ 58 (315)
.+.+|...+.-||+.. ..+..+.|.+.|..|++.++....+.
T Consensus 18 ~~~~r~~~~~~~p~~~-~~eisk~lg~~Wk~ls~~eK~~y~~~ 59 (77)
T 1hme_A 18 CSEYRPKIKGEHPGLS-IGDVAKKLGEMWNNTAADDKQPYEKK 59 (77)
T ss_dssp HHHHHHHHHHHCTTCC-HHHHHHHHHHHHHHSCGGGSHHHHHH
T ss_pred HHHHHHHHHHHCCCCC-HHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 3455666667788864 33888999999999997776554443
No 89
>1k99_A Upstream binding factor 1; alpha-helix, L-shape, DNA binding protein; NMR {Homo sapiens} SCOP: a.21.1.1
Probab=23.80 E-value=46 Score=24.23 Aligned_cols=43 Identities=21% Similarity=0.293 Sum_probs=32.1
Q ss_pred HHHHHHHHHHhCCCCCCCHHHHHHHHHHHhhcCCCccccccccc
Q 021275 16 KKAYRKAAIKNHPDKGGDPEKFKELAQAYEVLSDPEKREIYDQY 59 (315)
Q Consensus 16 k~ayr~la~~~hPd~~~~~~~f~~i~~Ay~~L~d~~~R~~YD~~ 59 (315)
.+.+|...+.-||+.. ..+..+.|.+.|..|++.++....|..
T Consensus 22 ~~~~r~~ik~~~P~~~-~~eisk~lg~~Wk~ls~eeK~~Y~~~A 64 (99)
T 1k99_A 22 FMEKRAKYAKLHPEMS-NLDLTKILSKKYKELPEKKKMKYIQDF 64 (99)
T ss_dssp HHHHHHHHHTTCTTSC-SHHHHHHHHHHHHHSCSTTHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCC-HHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 4455666677788864 348889999999999988877665543
No 90
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=23.80 E-value=41 Score=35.14 Aligned_cols=33 Identities=27% Similarity=0.772 Sum_probs=21.9
Q ss_pred ecCCCcCCceEEEEEecCCcceeEeeeeCCCCCCCce
Q 021275 148 KCSGCQGSGMKVSIRHLGPSMIQQMQHPCNECKGTGE 184 (315)
Q Consensus 148 ~C~~C~G~G~~~~~~~~~~g~~~~~~~~C~~C~G~G~ 184 (315)
.|+.|.|.|.+....++ +..+..+|..|+|...
T Consensus 755 rC~~C~g~G~i~~em~f----l~~v~~~ce~c~G~r~ 787 (972)
T 2r6f_A 755 RCEACHGDGIIKIEMHF----LPDVYVPCEVCHGKRY 787 (972)
T ss_dssp BCTTTTTCSEEEECCSS----SCCEEEECTTTTTCCB
T ss_pred cccccccccceeeehhc----cccccccccccccccc
Confidence 49999999975433222 2334678888888753
No 91
>1z6h_A Biotin/lipoyl attachment protein; solution structure, biosynthetic protein; HET: BTI; NMR {Bacillus subtilis} PDB: 1z7t_A 2b8f_A 2b8g_A*
Probab=22.32 E-value=1.7e+02 Score=19.03 Aligned_cols=28 Identities=21% Similarity=0.262 Sum_probs=20.4
Q ss_pred EEEEeCC-CCCeEEEecCCCceeeCCcEE
Q 021275 273 QFVITHL-DGRQLLIKSQPGEVVKPGKYN 300 (315)
Q Consensus 273 ~~~v~tl-dG~~~~i~~~~~~v~~pg~~~ 300 (315)
...|..+ +|....+.+.+|+.+.+|+..
T Consensus 36 ~~~i~ap~~G~v~~~~v~~G~~V~~G~~l 64 (72)
T 1z6h_A 36 EIPIVADRSGIVKEVKKKEGDFVNEGDVL 64 (72)
T ss_dssp EEEEECSSCEEEEEESSCTTCEECTTCEE
T ss_pred EEEEECCCCcEEEEEecCCCCEECCCCEE
Confidence 4556555 787656778889999998764
No 92
>2eqz_A High mobility group protein B3; HMG-box domain, mobility group protein 2A, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=22.10 E-value=41 Score=23.64 Aligned_cols=43 Identities=19% Similarity=0.268 Sum_probs=31.3
Q ss_pred HHHHHHHHHHhCCCCCCC-HHHHHHHHHHHhhcCCCcccccccc
Q 021275 16 KKAYRKAAIKNHPDKGGD-PEKFKELAQAYEVLSDPEKREIYDQ 58 (315)
Q Consensus 16 k~ayr~la~~~hPd~~~~-~~~f~~i~~Ay~~L~d~~~R~~YD~ 58 (315)
.+.+|...+.-||+...+ .+..+.|.+.|..|++.++....|.
T Consensus 27 ~~~~r~~~k~~~p~~~~~~~eisk~lg~~Wk~ls~~eK~~y~~~ 70 (86)
T 2eqz_A 27 VQTCREEHKKKNPEVPVNFAEFSKKCSERWKTMSGKEKSKFDEM 70 (86)
T ss_dssp HHHHHHHHHHHCTTSCCCHHHHHHHHHHHHHSSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 345566667789997643 4888999999999998776655443
No 93
>1v2y_A 3300001G02RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=21.98 E-value=65 Score=23.89 Aligned_cols=21 Identities=10% Similarity=0.248 Sum_probs=17.4
Q ss_pred CEEEEeCCCCCeEEEecCCCc
Q 021275 272 FQFVITHLDGRQLLIKSQPGE 292 (315)
Q Consensus 272 ~~~~v~tldG~~~~i~~~~~~ 292 (315)
..+.|.+++|+.+.|.+++.+
T Consensus 8 M~I~Vk~l~g~~~~v~V~~~~ 28 (105)
T 1v2y_A 8 MTVRVCKMDGEVMPVVVVQNA 28 (105)
T ss_dssp EEEEEECSSSCEEEEEECTTC
T ss_pred EEEEEEecCCCEEEEEECCCC
Confidence 457889999999999888765
No 94
>3vdz_A Ubiquitin-40S ribosomal protein S27A; gadolinium, MRI contrast agent, peptide-based contrast agent lanthanide binding TAG; 2.40A {Synthetic construct} PDB: 2ojr_A
Probab=21.06 E-value=50 Score=24.43 Aligned_cols=38 Identities=21% Similarity=0.549 Sum_probs=20.6
Q ss_pred CCcEEEEEecC---HHHHhCCCEEEEeCCCCCeEEEecCCC
Q 021275 254 GDDLFVEHTLS---LTEALCGFQFVITHLDGRQLLIKSQPG 291 (315)
Q Consensus 254 g~dL~~~~~I~---l~~al~G~~~~v~tldG~~~~i~~~~~ 291 (315)
+.+++++-..+ ..+......+.|.+++|+.+.|.+++.
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~~m~I~Vk~~~G~~~~l~v~~~ 55 (111)
T 3vdz_A 15 GDELYIDTDNDGSIDGDELLAMQIFVKTLTGKTITLEVEPS 55 (111)
T ss_dssp GGGEEECTTCSSCCCTGGGGCEEEEEECSSSCEEEEEECTT
T ss_pred CceeccccccccccCcCCCccEEEEEEeCCCCEEEEEeCCC
Confidence 44555554443 333334556666777776666665544
No 95
>1qyp_A RNA polymerase II; transcription, RPB9, Zn ribbon, hyperthermophilic, extremophIle; NMR {Thermococcus celer} SCOP: g.41.3.1
Probab=20.25 E-value=1.1e+02 Score=19.73 Aligned_cols=16 Identities=13% Similarity=0.196 Sum_probs=7.9
Q ss_pred ecCCCcCCceEEEEEe
Q 021275 148 KCSGCQGSGMKVSIRH 163 (315)
Q Consensus 148 ~C~~C~G~G~~~~~~~ 163 (315)
+|+.|+..-......|
T Consensus 17 ~Cp~Cg~~~~~~~q~Q 32 (57)
T 1qyp_A 17 TCPKCGNDTAYWWEMQ 32 (57)
T ss_dssp CCTTTCCSEEEEEEEC
T ss_pred ECCCCCCCEEEEEEee
Confidence 4666666444444333
Done!