Query 021276
Match_columns 315
No_of_seqs 167 out of 1558
Neff 10.1
Searched_HMMs 29240
Date Mon Mar 25 15:19:40 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021276.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/021276hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1okc_A ADP, ATP carrier protei 100.0 5.7E-56 2E-60 384.0 27.2 288 9-302 3-297 (297)
2 2lck_A Mitochondrial uncouplin 100.0 8.1E-57 2.8E-61 390.2 20.8 286 15-308 3-292 (303)
3 1okc_A ADP, ATP carrier protei 100.0 8E-36 2.7E-40 257.7 16.3 192 113-304 5-203 (297)
4 2lck_A Mitochondrial uncouplin 100.0 3.2E-35 1.1E-39 254.5 17.5 185 118-306 4-196 (303)
5 3tgu_G UQCRQ, mitochondrial ub 29.3 28 0.00097 22.6 1.9 41 269-309 33-73 (81)
6 1pp9_G Ubiquinol-cytochrome C 18.6 52 0.0018 21.4 1.6 41 269-309 33-73 (81)
7 3f2e_A SIRV coat protein; four 16.2 44 0.0015 21.2 0.7 34 252-285 6-43 (100)
8 2bnk_A Early protein GP16.7; D 14.6 1.3E+02 0.0045 17.9 2.4 46 231-277 20-65 (67)
9 1q90_R Cytochrome B6-F complex 14.3 1.8E+02 0.0062 16.7 3.0 25 10-35 11-35 (49)
10 3cx5_H Cytochrome B-C1 complex 11.3 1.5E+02 0.0052 19.8 2.3 38 268-305 42-79 (93)
No 1
>1okc_A ADP, ATP carrier protein heart isoform T1; mitochondrial transporter, nucleotide translocation, membrane protein, transport; HET: CXT CDL LDM PC1; 2.2A {Bos taurus} SCOP: f.42.1.1 PDB: 2c3e_A*
Probab=100.00 E-value=5.7e-56 Score=384.01 Aligned_cols=288 Identities=24% Similarity=0.398 Sum_probs=241.7
Q ss_pred CchhhHHHHHHHHHHHHHHHHhhchHHHHHHHHhccCCCCCCCCCcCcccHHHHHHHHHHhhchhhccccchhhhhhhcc
Q 021276 9 NSKGILCNAGAGAAAGIIAATFVCPLDVIKTRLQVHGLPKLTNGTVKGSLIVGSLEQIFQKEGLRGMYRGLSPTVLALLP 88 (315)
Q Consensus 9 ~~~~~~~~~~~g~~a~~~~~~i~~Pld~~k~~~Q~~~~~~~~~~~~~~~~~~~~~~~i~~~~G~~~l~~G~~~~~~~~~~ 88 (315)
++.+....+++|++||+++.++++|+|++|+|+|++...........+.+.++++++++++||++|||||+.+++++.++
T Consensus 3 ~~~~~~~~~~aG~~ag~~~~~~~~Pld~vKtrlQ~~~~~~~~~~~~~~~~~~~~~~~i~~~eG~~glyrG~~~~l~~~~~ 82 (297)
T 1okc_A 3 QALSFLKDFLAGGVAAAISKTAVAPIERVKLLLQVQHASKQISAEKQYKGIIDCVVRIPKEQGFLSFWRGNLANVIRYFP 82 (297)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHGGGCSSCCGGGSCCSHHHHHHHHHHHHCGGGGGTTTHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHhcccccccccccccccHHHHHHHHHhccchhheecccHHHHHHHHH
Confidence 34577889999999999999999999999999999864322222234456999999999999999999999999999999
Q ss_pred chhHHHHHHHHHHHhhccCCC-CCC--CchHHHHHHHHHHHHHHHHhhccHHHHHHHHhhcCCCC-CCcCCCcHHHHHHH
Q 021276 89 NWAVYFTMYEQLKSFLCSEDK-NHH--LSVGANVIAAAVAGAATTIATNPLWVVKTRLQTQGMKA-GVVPYRSTLSALSR 164 (315)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~-~~~--~~~~~~~~~g~~ag~~~~~i~~P~d~ik~r~~~~~~~~-~~~~~~~~~~~~~~ 164 (315)
..+++|.+||.+++.+....+ ... ......+++|++||+++.++++|+|+||+|+|.+.... ....|++.++++++
T Consensus 83 ~~~~~f~~ye~~k~~~~~~~~~~~~~~~~~~~~~~ag~~ag~~~~~~~~Pld~vktrlq~~~~~~~~~~~~~~~~~~~~~ 162 (297)
T 1okc_A 83 TQALNFAFKDKYKQIFLGGVDRHKQFWRYFAGNLASGGAAGATSLCFVYPLDFARTRLAADVGKGAAQREFTGLGNCITK 162 (297)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSSTTTCSCSSHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccccCcccchHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHhccccCCCcCcCCCCHHHHHHH
Confidence 999999999999995433221 111 23457889999999999999999999999999985322 23468999999999
Q ss_pred HHHhhChhhhccchhhhhcc-hhhhhhhHhhHHHHHHHHHhcCCCCCCCCChHHHHHHHHHHHHHHhhhcccHHHHHHHH
Q 021276 165 IAQEEGIRGLYSGLVPALAG-ISHVAIQFPTYEKIKMHLADQGNTSMDKLSARDVAVASSVSKIFASTLTYPHEVVRSRL 243 (315)
Q Consensus 165 i~~~~G~~~ly~G~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~Pld~ik~r~ 243 (315)
|+++||+++||||+.+++++ ++..+++|.+||.+++.+.+. +..+....+++|+++|++++++++|+|+||+||
T Consensus 163 i~~~eG~~glyrG~~~~l~~~~~~~~~~f~~ye~~k~~~~~~-----~~~~~~~~~~~g~~ag~~a~~~t~P~dvvktr~ 237 (297)
T 1okc_A 163 IFKSDGLRGLYQGFNVSVQGIIIYRAAYFGVYDTAKGMLPDP-----KNVHIIVSWMIAQTVTAVAGLVSYPFDTVRRRM 237 (297)
T ss_dssp HHHHHCHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHSSCGG-----GCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhccHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHhccC-----CCccHHHHHHHHHHHHHHHHHhcChHHHHHHHH
Confidence 99999999999999999997 679999999999999976432 224567778999999999999999999999999
Q ss_pred hhcCCC--CCCCCCCHHHHHHHHHHhcCccccccchhhhHhhhccchhhHHHHHHHHHHHh
Q 021276 244 QEQGHH--SEKRYSGVVDCIKKVFQQEGLPGFYRGCATNLLRTTPAAVITFTSFEMIHRFL 302 (315)
Q Consensus 244 q~~~~~--~~~~~~~~~~~~~~i~~~~G~~~ly~G~~~~~~~~~~~~~~~~~~y~~~~~~~ 302 (315)
|.+... ....|.++++|+++++++||++|||||+.++++|. +..++.|.+||.+++++
T Consensus 238 q~~~~~~~~~~~y~~~~~~~~~i~~~eG~~glyrG~~~~~~r~-~~~~~~f~~ye~~k~~l 297 (297)
T 1okc_A 238 MMQSGRKGADIMYTGTVDCWRKIAKDEGPKAFFKGAWSNVLRG-MGGAFVLVLYDEIKKFV 297 (297)
T ss_dssp HTTTTCCGGGCSCSSHHHHHHHHHHHHCGGGGGTTHHHHHHHH-HHHHHHHHHHHTC----
T ss_pred hhcCCCCCCCCCCCCHHHHHHHHHHHcCcCeEecchHHHHHhh-ccceeeehHHHHHHhhC
Confidence 997542 23579999999999999999999999999999996 56789999999988764
No 2
>2lck_A Mitochondrial uncoupling protein 2; membrane protein, proton translocator, mitochondrial carrier transport protein, structural genomics; NMR {Mus musculus}
Probab=100.00 E-value=8.1e-57 Score=390.15 Aligned_cols=286 Identities=26% Similarity=0.412 Sum_probs=250.3
Q ss_pred HHHHHHHHHHHHHHHhhchHHHHHHHHhccCCCCCC---CCCcCcccHHHHHHHHHHhhchhhccccchhhhhhhccchh
Q 021276 15 CNAGAGAAAGIIAATFVCPLDVIKTRLQVHGLPKLT---NGTVKGSLIVGSLEQIFQKEGLRGMYRGLSPTVLALLPNWA 91 (315)
Q Consensus 15 ~~~~~g~~a~~~~~~i~~Pld~~k~~~Q~~~~~~~~---~~~~~~~~~~~~~~~i~~~~G~~~l~~G~~~~~~~~~~~~~ 91 (315)
.++++|++||+++.++++|+|++|+|+|++...... .......+.++++++++++||+++||||+.+++++.++..+
T Consensus 3 ~~~~aG~~ag~~~~~~~~Pld~iKtrlQ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~eG~~glyrG~~~~l~~~~~~~~ 82 (303)
T 2lck_A 3 VKFLGAGTAACIADLITFPLDTAKVRLQIQGESQGLVRTAASAQYRGVLGTILTMVRTEGPRSLYNGLVAGLQRQMSFAS 82 (303)
T ss_dssp CHHHHHHHHHHHHHHTTHHHHHHHHHSSCCTTCCSHHHHCSCSSCSCHHHHHHHHHHHHCHHHHHSSHHHHHHHHHHHHH
T ss_pred hhHHhHHHHHHHHHHHcCcHHHHHHHHHhhhccccccccccCCCCCCHHHHHHHHHHhhCHHHHHcCCHHHHHHHHHHHH
Confidence 368999999999999999999999999998653210 01223456999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhccCCCCCCCchHHHHHHHHHHHHHHHHhhccHHHHHHHHhhcCCCCCCcCCCcHHHHHHHHHHhhCh
Q 021276 92 VYFTMYEQLKSFLCSEDKNHHLSVGANVIAAAVAGAATTIATNPLWVVKTRLQTQGMKAGVVPYRSTLSALSRIAQEEGI 171 (315)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ag~~~~~i~~P~d~ik~r~~~~~~~~~~~~~~~~~~~~~~i~~~~G~ 171 (315)
++|.+||.+++.+.+..+ ..+....+++|++||+++.++++|+|+||+|+|.+........|++.++++++|+++||+
T Consensus 83 i~f~~ye~~k~~~~~~~~--~~~~~~~~~ag~~ag~~~~~~~~Pld~vktrlq~~~~~~~~~~~~~~~~~~~~i~~~eG~ 160 (303)
T 2lck_A 83 VRIGLYDSVKQFYTKGSE--HAGIGSRLLAGSTTGALAVAVAQPTDVVKVRFQAQARAGGGRRYQSTVEAYKTIAREEGI 160 (303)
T ss_dssp HTTTHHHHHHHHHSCCCS--SCCHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHSCSCCCSSSCCCHHHHHHHHHHHHCH
T ss_pred HHHHHHHHHHHHHhcCCc--CCcHHHHHHHHHHHHHHHHHHcCcHHHHHHHHhcccccCCCCCCCCHHHHHHHHHHhcCh
Confidence 999999999998865422 356778999999999999999999999999999986543345689999999999999999
Q ss_pred hhhccchhhhhcc-hhhhhhhHhhHHHHHHHHHhcCCCCCCCCChHHHHHHHHHHHHHHhhhcccHHHHHHHHhhcCCCC
Q 021276 172 RGLYSGLVPALAG-ISHVAIQFPTYEKIKMHLADQGNTSMDKLSARDVAVASSVSKIFASTLTYPHEVVRSRLQEQGHHS 250 (315)
Q Consensus 172 ~~ly~G~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~Pld~ik~r~q~~~~~~ 250 (315)
++||||+.+++++ ++..+++|.+||.+|+.+.+... ...+....+++|++||++++++++|+|+||+|||.+..
T Consensus 161 ~glyrG~~~~l~~~~~~~~i~f~~ye~~k~~l~~~~~---~~~~~~~~~~~g~~ag~~~~~~~~P~dvvktrlq~~~~-- 235 (303)
T 2lck_A 161 RGLWKGTSPNVARNAIVNCAELVTYDLIKDTLLKANL---MTDDLPCHFTSAFGAGFCTTVIASPVDVVKTRYMNSAL-- 235 (303)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTTS---CCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCS--
T ss_pred hhhhCCccHHHHHHHHHHHHHHHHHHHHHHHHHhccC---CCCchHHHHHHHHHHHHHHHHHcCHHHHHHHHHHhccc--
Confidence 9999999999997 67999999999999998765432 23456778999999999999999999999999999743
Q ss_pred CCCCCCHHHHHHHHHHhcCccccccchhhhHhhhccchhhHHHHHHHHHHHhhccCCC
Q 021276 251 EKRYSGVVDCIKKVFQQEGLPGFYRGCATNLLRTTPAAVITFTSFEMIHRFLVSYFPP 308 (315)
Q Consensus 251 ~~~~~~~~~~~~~i~~~~G~~~ly~G~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~ 308 (315)
..|.++++|+++++++||++|||||+.++++|.+|..+++|.+||.+++++.+....
T Consensus 236 -~~y~~~~~~~~~i~~~eG~~glyrG~~~~~~r~~p~~~i~f~~ye~~k~~l~~~~~~ 292 (303)
T 2lck_A 236 -GQYHSAGHCALTMLRKEGPRAFYKGFMPSFLRLGSWNVVMFVTYEQLKRALMAAYQS 292 (303)
T ss_dssp -SSCCSHHHHHHHHHHSSCTHHHHSCCHHHHHHHHHHHHHHHHHHHHHHSCCCCHHHH
T ss_pred -cccCCHHHHHHHHHHHcChHHhhccHHHHHHHHHhHHHHHHHHHHHHHHHHHHhccC
Confidence 469999999999999999999999999999999999999999999999988765543
No 3
>1okc_A ADP, ATP carrier protein heart isoform T1; mitochondrial transporter, nucleotide translocation, membrane protein, transport; HET: CXT CDL LDM PC1; 2.2A {Bos taurus} SCOP: f.42.1.1 PDB: 2c3e_A*
Probab=100.00 E-value=8e-36 Score=257.72 Aligned_cols=192 Identities=21% Similarity=0.344 Sum_probs=164.3
Q ss_pred CchHHHHHHHHHHHHHHHHhhccHHHHHHHHhhcCCCC---CCcCCCcHHHHHHHHHHhhChhhhccchhhhhcc-hhhh
Q 021276 113 LSVGANVIAAAVAGAATTIATNPLWVVKTRLQTQGMKA---GVVPYRSTLSALSRIAQEEGIRGLYSGLVPALAG-ISHV 188 (315)
Q Consensus 113 ~~~~~~~~~g~~ag~~~~~i~~P~d~ik~r~~~~~~~~---~~~~~~~~~~~~~~i~~~~G~~~ly~G~~~~l~~-~~~~ 188 (315)
.+....+++|++||+++.++++|+|+||+|+|.+.... ....|++.++++++|+++||+++||||+.+.+++ ++..
T Consensus 5 ~~~~~~~~aG~~ag~~~~~~~~Pld~vKtrlQ~~~~~~~~~~~~~~~~~~~~~~~i~~~eG~~glyrG~~~~l~~~~~~~ 84 (297)
T 1okc_A 5 LSFLKDFLAGGVAAAISKTAVAPIERVKLLLQVQHASKQISAEKQYKGIIDCVVRIPKEQGFLSFWRGNLANVIRYFPTQ 84 (297)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHGGGCSSCCGGGSCCSHHHHHHHHHHHHCGGGGGTTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHhcccccccccccccccHHHHHHHHHhccchhheecccHHHHHHHHHHH
Confidence 35567899999999999999999999999999985321 2245899999999999999999999999999996 6789
Q ss_pred hhhHhhHHHHHHHHHhcCCCCCC-CCChHHHHHHHHHHHHHHhhhcccHHHHHHHHhhcCCC--CCCCCCCHHHHHHHHH
Q 021276 189 AIQFPTYEKIKMHLADQGNTSMD-KLSARDVAVASSVSKIFASTLTYPHEVVRSRLQEQGHH--SEKRYSGVVDCIKKVF 265 (315)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~a~~~~~~~~~Pld~ik~r~q~~~~~--~~~~~~~~~~~~~~i~ 265 (315)
+++|.+||.+++.+....+.+.+ .......+++|++||+++.++++|+|+||+|||++... ....|.++++|+++++
T Consensus 85 ~~~f~~ye~~k~~~~~~~~~~~~~~~~~~~~~~ag~~ag~~~~~~~~Pld~vktrlq~~~~~~~~~~~~~~~~~~~~~i~ 164 (297)
T 1okc_A 85 ALNFAFKDKYKQIFLGGVDRHKQFWRYFAGNLASGGAAGATSLCFVYPLDFARTRLAADVGKGAAQREFTGLGNCITKIF 164 (297)
T ss_dssp HHHHHHHHHHHHHHHTTCCTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSSTTTCSCSSHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccccCcccchHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHhccccCCCcCcCCCCHHHHHHHHH
Confidence 99999999999965443222111 12345678999999999999999999999999998532 2457899999999999
Q ss_pred HhcCccccccchhhhHhhhccchhhHHHHHHHHHHHhhc
Q 021276 266 QQEGLPGFYRGCATNLLRTTPAAVITFTSFEMIHRFLVS 304 (315)
Q Consensus 266 ~~~G~~~ly~G~~~~~~~~~~~~~~~~~~y~~~~~~~~~ 304 (315)
++||++|||||+.++++|.+|..++.|.+||.+++.+.+
T Consensus 165 ~~eG~~glyrG~~~~l~~~~~~~~~~f~~ye~~k~~~~~ 203 (297)
T 1okc_A 165 KSDGLRGLYQGFNVSVQGIIIYRAAYFGVYDTAKGMLPD 203 (297)
T ss_dssp HHHCHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHSSCG
T ss_pred HhccHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 999999999999999999999999999999999998754
No 4
>2lck_A Mitochondrial uncoupling protein 2; membrane protein, proton translocator, mitochondrial carrier transport protein, structural genomics; NMR {Mus musculus}
Probab=100.00 E-value=3.2e-35 Score=254.53 Aligned_cols=185 Identities=26% Similarity=0.469 Sum_probs=165.0
Q ss_pred HHHHHHHHHHHHHHhhccHHHHHHHHhhcCCCCC------CcCCCcHHHHHHHHHHhhChhhhccchhhhhcc-hhhhhh
Q 021276 118 NVIAAAVAGAATTIATNPLWVVKTRLQTQGMKAG------VVPYRSTLSALSRIAQEEGIRGLYSGLVPALAG-ISHVAI 190 (315)
Q Consensus 118 ~~~~g~~ag~~~~~i~~P~d~ik~r~~~~~~~~~------~~~~~~~~~~~~~i~~~~G~~~ly~G~~~~l~~-~~~~~~ 190 (315)
.+++|++||+++.++++|+|+||+|+|.+..... ...|++.++++++|+++||+++||||+.+.+++ ++..++
T Consensus 4 ~~~aG~~ag~~~~~~~~Pld~iKtrlQ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~eG~~glyrG~~~~l~~~~~~~~i 83 (303)
T 2lck_A 4 KFLGAGTAACIADLITFPLDTAKVRLQIQGESQGLVRTAASAQYRGVLGTILTMVRTEGPRSLYNGLVAGLQRQMSFASV 83 (303)
T ss_dssp HHHHHHHHHHHHHHTTHHHHHHHHHSSCCTTCCSHHHHCSCSSCSCHHHHHHHHHHHHCHHHHHSSHHHHHHHHHHHHHH
T ss_pred hHHhHHHHHHHHHHHcCcHHHHHHHHHhhhccccccccccCCCCCCHHHHHHHHHHhhCHHHHHcCCHHHHHHHHHHHHH
Confidence 5789999999999999999999999999864321 245899999999999999999999999999996 679999
Q ss_pred hHhhHHHHHHHHHhcCCCCCCCCChHHHHHHHHHHHHHHhhhcccHHHHHHHHhhcCCC-CCCCCCCHHHHHHHHHHhcC
Q 021276 191 QFPTYEKIKMHLADQGNTSMDKLSARDVAVASSVSKIFASTLTYPHEVVRSRLQEQGHH-SEKRYSGVVDCIKKVFQQEG 269 (315)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~Pld~ik~r~q~~~~~-~~~~~~~~~~~~~~i~~~~G 269 (315)
+|.+||.+|+.+.+..+ ..+....+++|+++|+++.++++|+|+||+|||++... ....|.++++|+++++++||
T Consensus 84 ~f~~ye~~k~~~~~~~~----~~~~~~~~~ag~~ag~~~~~~~~Pld~vktrlq~~~~~~~~~~~~~~~~~~~~i~~~eG 159 (303)
T 2lck_A 84 RIGLYDSVKQFYTKGSE----HAGIGSRLLAGSTTGALAVAVAQPTDVVKVRFQAQARAGGGRRYQSTVEAYKTIAREEG 159 (303)
T ss_dssp TTTHHHHHHHHHSCCCS----SCCHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHSCSCCCSSSCCCHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhcCCc----CCcHHHHHHHHHHHHHHHHHHcCcHHHHHHHHhcccccCCCCCCCCHHHHHHHHHHhcC
Confidence 99999999998865421 35677889999999999999999999999999998542 34578999999999999999
Q ss_pred ccccccchhhhHhhhccchhhHHHHHHHHHHHhhccC
Q 021276 270 LPGFYRGCATNLLRTTPAAVITFTSFEMIHRFLVSYF 306 (315)
Q Consensus 270 ~~~ly~G~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~ 306 (315)
++|||||+.++++|.+|..++.|.+||.+++.+.+..
T Consensus 160 ~~glyrG~~~~l~~~~~~~~i~f~~ye~~k~~l~~~~ 196 (303)
T 2lck_A 160 IRGLWKGTSPNVARNAIVNCAELVTYDLIKDTLLKAN 196 (303)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTT
T ss_pred hhhhhCCccHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 9999999999999999999999999999999987643
No 5
>3tgu_G UQCRQ, mitochondrial ubiquinol-cytochrome C reductase UB binding protein QP-C; cytochrome BC1, membrane protein, heme protein, rieske iron protein; HET: HEM WF3 UQ CDL PEE HEC BOG; 2.70A {Gallus gallus} PDB: 3cwb_G* 3h1i_G* 3h1h_G* 3h1k_G* 3h1l_G* 3h1j_G* 3l71_G* 3l72_G* 3l73_G* 3l74_G* 3l75_G* 3l70_G*
Probab=29.31 E-value=28 Score=22.64 Aligned_cols=41 Identities=10% Similarity=0.242 Sum_probs=31.2
Q ss_pred CccccccchhhhHhhhccchhhHHHHHHHHHHHhhccCCCC
Q 021276 269 GLPGFYRGCATNLLRTTPAAVITFTSFEMIHRFLVSYFPPD 309 (315)
Q Consensus 269 G~~~ly~G~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~ 309 (315)
|+...+|-+..+++..+|..++...+|+..++..+......
T Consensus 33 ~i~N~~RR~~~q~l~v~pPfi~~Y~i~~Wa~~~ne~l~rKn 73 (81)
T 3tgu_G 33 ALPNVWRRFSSQVFKVAPPFLGAYLLYSWGTQEFERLKRKN 73 (81)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCC
T ss_pred hhhHHHHHHHHhhhHhhHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 45556666778888899999999999999888776554443
No 6
>1pp9_G Ubiquinol-cytochrome C reductase complex ubiquino protein QP-C; cytochrome BC1, membrane protein, heme protein, rieske iron protein, cytochrome B, complex III; HET: BHG HEM HEC SMA UQ CDL PEE; 2.10A {Bos taurus} SCOP: f.23.13.1 PDB: 1bgy_G* 1be3_G* 1l0n_G* 1ntk_G* 1ntm_G* 1ntz_G* 1nu1_G* 1l0l_G* 1ppj_G* 1sqb_G* 1sqp_G* 1sqq_G* 1sqv_G* 1sqx_G* 2a06_G* 2fyu_G* 2ybb_G* 1bcc_G* 2bcc_G* 3bcc_G* ...
Probab=18.62 E-value=52 Score=21.37 Aligned_cols=41 Identities=17% Similarity=0.264 Sum_probs=31.4
Q ss_pred CccccccchhhhHhhhccchhhHHHHHHHHHHHhhccCCCC
Q 021276 269 GLPGFYRGCATNLLRTTPAAVITFTSFEMIHRFLVSYFPPD 309 (315)
Q Consensus 269 G~~~ly~G~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~ 309 (315)
|+...+|-+..+.+..+|..++...+|+..++..+.....+
T Consensus 33 ~i~n~~RR~~~~~l~v~pPfv~~Y~i~~Wa~~~~e~~~rKn 73 (81)
T 1pp9_G 33 GIPNVLRRTRACILRVAPPFVAFYLVYTWGTQEFEKSKRKN 73 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSC
T ss_pred hhhHHHHHHHhcceeeehhHHHHHHHHHHHHHHHHHHhCCC
Confidence 44556777778888899999999999999888776554443
No 7
>3f2e_A SIRV coat protein; four helix bundle, virus coat protein, viral protein; HET: CIT; 1.67A {Sulfolobus islandicus rudivirus 1 variorganism_taxid}
Probab=16.16 E-value=44 Score=21.25 Aligned_cols=34 Identities=21% Similarity=0.502 Sum_probs=22.5
Q ss_pred CCCCCHHHHHHHHHHhcCc----cccccchhhhHhhhc
Q 021276 252 KRYSGVVDCIKKVFQQEGL----PGFYRGCATNLLRTT 285 (315)
Q Consensus 252 ~~~~~~~~~~~~i~~~~G~----~~ly~G~~~~~~~~~ 285 (315)
+++.++-+-...++.+-|+ +++|.|++....|..
T Consensus 6 pkftsvne~vsavltqygvtgpnraiyqgfglkvaral 43 (100)
T 3f2e_A 6 PKFTAVAEQVSAVLSQYGITGPNRAIYQGFGLKVARAL 43 (100)
T ss_dssp --CHHHHHHHHHHHHHHTCCGGGHHHHHHHHHHHHHHH
T ss_pred ccchhHHHHHHHHHHHhcCCCccHHHHhhhhHHHHHHH
Confidence 4556666666677777776 558888887776654
No 8
>2bnk_A Early protein GP16.7; DNA-binding protein; 2.9A {Bacillus phage PHI29} SCOP: a.251.1.1 PDB: 2c5r_A 1zae_A
Probab=14.65 E-value=1.3e+02 Score=17.92 Aligned_cols=46 Identities=17% Similarity=0.403 Sum_probs=29.1
Q ss_pred hhcccHHHHHHHHhhcCCCCCCCCCCHHHHHHHHHHhcCccccccch
Q 021276 231 TLTYPHEVVRSRLQEQGHHSEKRYSGVVDCIKKVFQQEGLPGFYRGC 277 (315)
Q Consensus 231 ~~~~Pld~ik~r~q~~~~~~~~~~~~~~~~~~~i~~~~G~~~ly~G~ 277 (315)
-+--|+|.|---- .+.......-.++...-|..|+-|.-+-+|||.
T Consensus 20 nIrIP~DIIEdl~-~~~L~te~EVmnYiEnqR~~WKLEN~KKly~g~ 65 (67)
T 2bnk_A 20 NIRIPSDIIEDLV-NQRLQSEQEVLNYIETQRTYWKLENQKKLYRGS 65 (67)
T ss_dssp TCCCCHHHHHHHH-TTCCCCSHHHHHHHHHHHHHHHHHTTSCCCCSC
T ss_pred CCcCcHHHHHHHH-HHhhhhHHHHHHHHHhhHhHHhhhhhHHHHhcc
Confidence 4677888886544 332222222233455567778889999999996
No 9
>1q90_R Cytochrome B6-F complex iron-sulfur subunit; membrane protein complex, photosynthesis, electron transfer, oxydoreductase, chlorophyll; HET: HEM CL1 BCR TDS SQD LFA LMG; 3.10A {Chlamydomonas reinhardtii} SCOP: f.23.12.1
Probab=14.27 E-value=1.8e+02 Score=16.73 Aligned_cols=25 Identities=24% Similarity=0.270 Sum_probs=13.8
Q ss_pred chhhHHHHHHHHHHHHHHHHhhchHH
Q 021276 10 SKGILCNAGAGAAAGIIAATFVCPLD 35 (315)
Q Consensus 10 ~~~~~~~~~~g~~a~~~~~~i~~Pld 35 (315)
..++++.++.| +.+.....+.+|.-
T Consensus 11 RRqfln~l~~G-~~a~~a~~~~~P~v 35 (49)
T 1q90_R 11 KRNIMNLILAG-GAGLPITTLALGYG 35 (49)
T ss_dssp HHHHHHHHHHH-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH-HHHHHHHHHHHhhh
Confidence 45555555554 44556666666653
No 10
>3cx5_H Cytochrome B-C1 complex subunit 8; complex III, electron transfer complex, cytochrome BC1 complex, mitochondrialtransmembrane complex; HET: M3L SUC 6PH UMQ HEM SMA 8PE 9PE CN5 7PH CN3; 1.90A {Saccharomyces cerevisiae} SCOP: f.23.13.1 PDB: 1kb9_H* 1kyo_H* 1p84_H* 1ezv_G* 3cxh_H* 2ibz_G*
Probab=11.33 E-value=1.5e+02 Score=19.75 Aligned_cols=38 Identities=11% Similarity=0.038 Sum_probs=30.8
Q ss_pred cCccccccchhhhHhhhccchhhHHHHHHHHHHHhhcc
Q 021276 268 EGLPGFYRGCATNLLRTTPAAVITFTSFEMIHRFLVSY 305 (315)
Q Consensus 268 ~G~~~ly~G~~~~~~~~~~~~~~~~~~y~~~~~~~~~~ 305 (315)
.|+...+|-+..+.+..+|..++...+|+..++..+..
T Consensus 42 ~~i~N~~RR~~~q~l~v~pPfv~~Y~i~~Wa~~~~e~l 79 (93)
T 3cx5_H 42 NAVFNSFRRFKSQFLYVLIPAGIYWYWWKNGNEYNEFL 79 (93)
T ss_dssp TTSSSCSHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hcchHHHHHHHhcceEEechHhHHHHHHHHHHHHHHHH
Confidence 46777888888888899999999999998888765543
Done!