Query 021278
Match_columns 315
No_of_seqs 128 out of 1408
Neff 9.9
Searched_HMMs 46136
Date Fri Mar 29 08:59:56 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021278.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/021278hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK06753 hypothetical protein; 100.0 8.9E-37 1.9E-41 276.0 29.9 271 6-301 90-361 (373)
2 PRK06475 salicylate hydroxylas 100.0 3.6E-36 7.9E-41 274.1 28.9 268 6-298 99-379 (400)
3 TIGR03219 salicylate_mono sali 100.0 6E-36 1.3E-40 273.9 27.4 263 7-287 98-382 (414)
4 PRK07588 hypothetical protein; 100.0 1E-35 2.2E-40 270.6 27.1 269 6-297 95-368 (391)
5 COG0654 UbiH 2-polyprenyl-6-me 100.0 1.2E-35 2.6E-40 269.2 26.0 268 5-296 95-368 (387)
6 PLN02927 antheraxanthin epoxid 100.0 1E-34 2.2E-39 272.7 29.2 259 8-279 188-447 (668)
7 PRK08013 oxidoreductase; Provi 100.0 5.3E-35 1.1E-39 266.3 25.3 268 8-298 105-377 (400)
8 PRK05868 hypothetical protein; 100.0 1.5E-34 3.3E-39 260.5 27.0 263 8-293 99-367 (372)
9 PRK08850 2-octaprenyl-6-methox 100.0 2.6E-34 5.6E-39 262.4 25.3 266 8-297 105-376 (405)
10 TIGR01989 COQ6 Ubiquinone bios 100.0 3.9E-34 8.5E-39 263.2 26.3 280 8-303 111-433 (437)
11 PRK06617 2-octaprenyl-6-methox 100.0 2.9E-34 6.2E-39 259.3 23.6 257 7-298 97-358 (374)
12 PRK08163 salicylate hydroxylas 100.0 2.6E-33 5.6E-38 255.3 28.8 267 7-298 102-375 (396)
13 PRK05714 2-octaprenyl-3-methyl 100.0 1.1E-33 2.4E-38 258.4 25.6 284 8-314 106-401 (405)
14 PRK06183 mhpA 3-(3-hydroxyphen 100.0 1.6E-33 3.4E-38 265.6 25.9 263 8-297 107-377 (538)
15 KOG2614 Kynurenine 3-monooxyge 100.0 4.9E-34 1.1E-38 246.7 18.8 305 7-311 96-410 (420)
16 PRK08849 2-octaprenyl-3-methyl 100.0 2.1E-33 4.6E-38 254.6 23.6 260 9-299 105-370 (384)
17 PRK09126 hypothetical protein; 100.0 2.4E-33 5.2E-38 255.2 23.4 268 8-298 104-375 (392)
18 PRK06847 hypothetical protein; 100.0 1.6E-32 3.4E-37 248.4 28.1 263 8-296 101-372 (375)
19 PRK06996 hypothetical protein; 100.0 2.7E-33 5.8E-38 255.0 22.9 265 7-300 108-382 (398)
20 PRK07333 2-octaprenyl-6-methox 100.0 9.3E-33 2E-37 252.3 25.2 263 9-296 106-373 (403)
21 PRK07364 2-octaprenyl-6-methox 100.0 4.9E-33 1.1E-37 255.0 23.1 266 9-297 116-388 (415)
22 PRK07236 hypothetical protein; 100.0 2.1E-32 4.6E-37 248.3 26.9 248 10-279 96-376 (386)
23 PRK08773 2-octaprenyl-3-methyl 100.0 6.2E-33 1.3E-37 252.4 23.3 273 8-303 107-382 (392)
24 PRK07538 hypothetical protein; 100.0 2.2E-32 4.8E-37 250.2 27.0 243 7-273 95-361 (413)
25 PRK07045 putative monooxygenas 100.0 3.8E-32 8.2E-37 246.9 28.2 264 8-294 100-374 (388)
26 TIGR01984 UbiH 2-polyprenyl-6- 100.0 1.4E-32 3.1E-37 249.3 25.0 265 8-298 99-368 (382)
27 TIGR01988 Ubi-OHases Ubiquinon 100.0 4.1E-32 8.9E-37 246.5 24.5 268 7-297 99-370 (385)
28 PRK07494 2-octaprenyl-6-methox 100.0 3.2E-32 6.9E-37 247.5 23.7 268 8-302 105-376 (388)
29 PTZ00367 squalene epoxidase; P 100.0 4.9E-31 1.1E-35 246.5 32.0 288 6-314 123-454 (567)
30 PRK08020 ubiF 2-octaprenyl-3-m 100.0 1.2E-31 2.6E-36 243.9 25.7 270 8-303 106-381 (391)
31 PRK08243 4-hydroxybenzoate 3-m 100.0 1.7E-31 3.6E-36 242.8 25.8 271 6-302 95-377 (392)
32 PRK06185 hypothetical protein; 100.0 2.2E-31 4.7E-36 243.5 25.5 266 8-299 102-380 (407)
33 PLN02985 squalene monooxygenas 100.0 1.2E-30 2.5E-35 242.8 30.6 285 8-314 141-440 (514)
34 PRK06834 hypothetical protein; 100.0 4.6E-31 9.9E-36 244.9 27.8 256 7-295 93-353 (488)
35 PRK07608 ubiquinone biosynthes 100.0 3.1E-31 6.7E-36 241.0 23.5 267 8-299 105-375 (388)
36 PRK08244 hypothetical protein; 100.0 2E-30 4.4E-35 242.3 27.8 258 8-293 94-358 (493)
37 PRK05732 2-octaprenyl-6-methox 100.0 1.1E-30 2.3E-35 238.1 24.6 268 8-298 106-377 (395)
38 PRK08294 phenol 2-monooxygenas 100.0 2.1E-30 4.6E-35 246.8 25.3 258 6-283 133-417 (634)
39 PRK06184 hypothetical protein; 100.0 1.5E-30 3.3E-35 243.6 23.9 244 7-279 102-353 (502)
40 PRK08132 FAD-dependent oxidore 100.0 9.2E-30 2E-34 240.6 28.5 259 8-295 119-388 (547)
41 PF01494 FAD_binding_3: FAD bi 100.0 4.3E-31 9.3E-36 236.8 18.2 243 4-271 101-356 (356)
42 TIGR02360 pbenz_hydroxyl 4-hyd 100.0 8.8E-30 1.9E-34 231.0 26.3 266 10-302 99-377 (390)
43 PRK07190 hypothetical protein; 100.0 1.1E-29 2.3E-34 235.6 26.0 243 7-279 102-348 (487)
44 PRK06126 hypothetical protein; 100.0 2.7E-29 5.9E-34 237.5 27.5 243 8-279 120-376 (545)
45 PLN00093 geranylgeranyl diphos 99.9 2.5E-24 5.4E-29 197.6 24.5 249 8-288 126-394 (450)
46 TIGR02023 BchP-ChlP geranylger 99.9 2E-23 4.3E-28 189.6 27.2 239 10-285 88-342 (388)
47 PF08491 SE: Squalene epoxidas 99.9 1.3E-23 2.8E-28 175.7 23.3 238 57-314 2-243 (276)
48 TIGR02028 ChlP geranylgeranyl 99.9 3.2E-23 7E-28 188.4 25.6 249 9-289 88-356 (398)
49 PRK11445 putative oxidoreducta 99.9 1.5E-23 3.3E-28 187.7 23.2 245 7-296 92-343 (351)
50 TIGR02032 GG-red-SF geranylger 99.9 1.2E-23 2.6E-28 184.0 21.7 206 6-227 83-295 (295)
51 PRK08255 salicylyl-CoA 5-hydro 99.9 3.2E-24 7E-29 208.9 17.8 254 5-294 88-360 (765)
52 COG0644 FixC Dehydrogenases (f 99.9 1.6E-20 3.5E-25 170.7 25.6 244 6-279 87-340 (396)
53 PRK10015 oxidoreductase; Provi 99.9 1.5E-20 3.1E-25 172.3 23.3 254 7-281 101-374 (429)
54 TIGR01790 carotene-cycl lycope 99.9 1.3E-19 2.7E-24 164.9 25.0 240 6-277 77-332 (388)
55 PRK10157 putative oxidoreducta 99.9 2.1E-19 4.5E-24 164.9 25.4 254 6-280 100-372 (428)
56 KOG1298 Squalene monooxygenase 99.9 2.4E-19 5.1E-24 153.6 22.7 293 2-314 135-440 (509)
57 KOG3855 Monooxygenase involved 99.9 3.4E-21 7.3E-26 166.3 11.3 273 9-294 145-461 (481)
58 PLN02697 lycopene epsilon cycl 99.8 1.7E-16 3.7E-21 147.5 24.8 249 9-279 187-455 (529)
59 TIGR01789 lycopene_cycl lycope 99.8 2.2E-16 4.8E-21 142.0 21.6 231 6-275 81-318 (370)
60 PF04820 Trp_halogenase: Trypt 99.8 5.5E-17 1.2E-21 149.3 17.8 248 5-294 145-402 (454)
61 PLN02463 lycopene beta cyclase 99.7 2.8E-15 6E-20 137.4 23.8 207 7-233 107-334 (447)
62 PF05834 Lycopene_cycl: Lycope 99.5 4.9E-12 1.1E-16 114.3 22.4 204 6-229 79-290 (374)
63 TIGR01377 soxA_mon sarcosine o 98.0 0.00086 1.9E-08 60.8 17.7 69 10-79 141-212 (380)
64 TIGR02352 thiamin_ThiO glycine 97.9 0.0023 5E-08 56.9 19.1 59 10-69 133-194 (337)
65 PRK11259 solA N-methyltryptoph 97.8 0.0019 4.2E-08 58.4 17.3 58 11-69 146-205 (376)
66 TIGR00562 proto_IX_ox protopor 97.8 0.0054 1.2E-07 57.2 20.5 59 15-74 226-284 (462)
67 KOG2415 Electron transfer flav 97.7 0.0045 9.8E-08 55.2 17.4 218 5-233 174-424 (621)
68 PRK12409 D-amino acid dehydrog 97.7 0.0052 1.1E-07 56.4 18.3 63 15-77 198-268 (410)
69 TIGR01373 soxB sarcosine oxida 97.7 0.0029 6.2E-08 58.1 16.3 68 11-79 180-252 (407)
70 PF01266 DAO: FAD dependent ox 97.6 0.0013 2.7E-08 58.8 12.9 69 7-76 140-212 (358)
71 TIGR03197 MnmC_Cterm tRNA U-34 97.6 0.003 6.4E-08 57.4 14.7 60 10-69 131-191 (381)
72 PRK11883 protoporphyrinogen ox 97.5 0.0075 1.6E-07 56.0 16.9 56 15-70 222-277 (451)
73 PRK12416 protoporphyrinogen ox 97.5 0.0054 1.2E-07 57.3 15.9 60 15-75 227-286 (463)
74 PRK01747 mnmC bifunctional tRN 97.5 0.0038 8.1E-08 61.1 14.7 60 10-69 404-464 (662)
75 PRK07233 hypothetical protein; 97.4 0.013 2.8E-07 54.1 17.6 59 15-74 199-259 (434)
76 PF01593 Amino_oxidase: Flavin 97.4 0.002 4.3E-08 59.0 11.2 46 26-71 223-268 (450)
77 PRK00711 D-amino acid dehydrog 97.3 0.041 8.9E-07 50.5 18.6 65 12-77 199-267 (416)
78 PLN02612 phytoene desaturase 97.2 0.019 4.1E-07 55.1 16.1 60 15-75 309-372 (567)
79 PLN02676 polyamine oxidase 97.2 0.0055 1.2E-07 57.5 11.8 57 14-70 224-288 (487)
80 TIGR02734 crtI_fam phytoene de 97.2 0.054 1.2E-06 51.2 18.5 61 14-74 219-282 (502)
81 PRK11728 hydroxyglutarate oxid 97.1 0.0097 2.1E-07 54.3 12.8 68 9-77 144-214 (393)
82 TIGR03467 HpnE squalene-associ 97.0 0.025 5.3E-07 51.9 14.5 56 18-74 201-259 (419)
83 TIGR02730 carot_isom carotene 96.8 0.053 1.1E-06 51.1 15.3 62 14-75 229-293 (493)
84 PRK13369 glycerol-3-phosphate 96.8 0.1 2.2E-06 49.4 16.9 67 11-77 152-226 (502)
85 PRK04176 ribulose-1,5-biphosph 96.8 0.0043 9.3E-08 53.1 7.0 68 7-74 97-179 (257)
86 PRK12266 glpD glycerol-3-phosp 96.7 0.093 2E-06 49.7 15.8 59 11-69 152-217 (508)
87 TIGR00292 thiazole biosynthesi 96.6 0.009 2E-07 51.0 7.6 68 7-74 93-176 (254)
88 PF13738 Pyr_redox_3: Pyridine 96.6 0.0068 1.5E-07 49.6 6.5 59 11-69 79-139 (203)
89 PLN02268 probable polyamine ox 96.4 0.071 1.5E-06 49.3 13.0 42 26-67 210-251 (435)
90 TIGR03329 Phn_aa_oxid putative 96.4 0.049 1.1E-06 50.9 11.9 58 10-69 179-238 (460)
91 PLN02576 protoporphyrinogen ox 96.4 0.15 3.3E-06 48.0 15.2 52 15-66 240-295 (496)
92 TIGR02733 desat_CrtD C-3',4' d 96.0 1.1 2.5E-05 42.1 18.9 60 14-74 232-299 (492)
93 PLN02976 amine oxidase 95.9 0.52 1.1E-05 49.5 16.9 49 15-66 937-995 (1713)
94 PLN02328 lysine-specific histo 95.8 0.57 1.2E-05 46.6 16.4 50 15-68 438-487 (808)
95 COG1231 Monoamine oxidase [Ami 95.6 1.4 3.1E-05 40.3 16.5 209 18-232 209-448 (450)
96 PLN02568 polyamine oxidase 95.5 0.047 1E-06 51.9 7.6 60 8-67 234-295 (539)
97 PRK05257 malate:quinone oxidor 95.5 0.094 2E-06 49.4 9.2 70 9-78 178-257 (494)
98 COG0579 Predicted dehydrogenas 95.4 0.31 6.8E-06 44.7 12.1 69 10-78 149-222 (429)
99 PLN03000 amine oxidase 95.4 0.91 2E-05 45.4 15.9 48 15-66 382-429 (881)
100 PRK13339 malate:quinone oxidor 95.3 0.12 2.6E-06 48.6 9.2 71 8-78 178-258 (497)
101 COG2081 Predicted flavoprotein 95.2 0.065 1.4E-06 47.9 6.8 55 14-68 111-167 (408)
102 TIGR01320 mal_quin_oxido malat 95.2 0.16 3.4E-06 47.7 9.7 70 9-78 173-251 (483)
103 PRK04965 NADH:flavorubredoxin 95.1 0.1 2.3E-06 47.3 8.3 53 25-77 196-250 (377)
104 COG0665 DadA Glycine/D-amino a 95.0 1.7 3.8E-05 39.2 15.9 59 11-70 153-214 (387)
105 PLN02529 lysine-specific histo 94.9 1.2 2.5E-05 44.1 14.9 49 15-67 358-406 (738)
106 COG3380 Predicted NAD/FAD-depe 94.9 0.28 6.2E-06 41.7 9.2 183 26-229 117-329 (331)
107 PLN02464 glycerol-3-phosphate 94.8 1.5 3.3E-05 42.7 15.6 65 11-75 229-304 (627)
108 TIGR00275 flavoprotein, HI0933 94.8 0.15 3.3E-06 46.6 8.3 55 13-68 104-160 (400)
109 PLN02487 zeta-carotene desatur 94.6 3.6 7.8E-05 39.6 17.2 50 25-75 308-366 (569)
110 TIGR02732 zeta_caro_desat caro 94.5 1.2 2.6E-05 41.8 13.9 50 25-75 232-290 (474)
111 TIGR02731 phytoene_desat phyto 94.3 1.5 3.3E-05 40.8 14.0 60 15-75 214-282 (453)
112 PRK05192 tRNA uridine 5-carbox 94.1 0.15 3.3E-06 48.8 6.9 59 10-69 96-158 (618)
113 PF01134 GIDA: Glucose inhibit 94.0 0.19 4.2E-06 45.4 7.1 58 9-67 90-151 (392)
114 PRK05249 soluble pyridine nucl 93.8 0.25 5.4E-06 46.2 7.6 47 25-71 229-275 (461)
115 PF13454 NAD_binding_9: FAD-NA 93.7 0.4 8.6E-06 37.6 7.6 57 10-66 90-155 (156)
116 PF03486 HI0933_like: HI0933-l 93.5 0.18 3.8E-06 46.3 5.9 55 14-68 109-166 (409)
117 PF00070 Pyr_redox: Pyridine n 93.4 0.22 4.9E-06 34.0 5.0 37 14-52 44-80 (80)
118 PTZ00383 malate:quinone oxidor 93.0 0.3 6.5E-06 46.0 6.8 67 9-76 206-282 (497)
119 PRK15317 alkyl hydroperoxide r 92.7 0.29 6.2E-06 46.5 6.3 57 12-68 264-322 (517)
120 PRK06116 glutathione reductase 92.7 0.39 8.4E-06 44.7 7.1 47 25-71 221-268 (450)
121 TIGR01292 TRX_reduct thioredox 92.2 0.6 1.3E-05 40.5 7.3 55 13-68 56-112 (300)
122 COG2509 Uncharacterized FAD-de 91.9 3 6.6E-05 38.3 11.3 52 17-68 176-230 (486)
123 PRK09754 phenylpropionate diox 91.8 0.73 1.6E-05 42.1 7.7 45 25-70 199-243 (396)
124 PRK07845 flavoprotein disulfid 91.5 0.7 1.5E-05 43.3 7.4 47 25-71 231-277 (466)
125 PLN02507 glutathione reductase 91.3 0.81 1.7E-05 43.3 7.5 47 25-71 257-303 (499)
126 PRK09897 hypothetical protein; 91.2 0.69 1.5E-05 44.0 7.0 40 27-66 124-164 (534)
127 PRK07208 hypothetical protein; 90.9 13 0.00029 34.8 15.4 56 15-70 219-282 (479)
128 KOG2844 Dimethylglycine dehydr 90.9 15 0.00033 35.7 15.0 69 10-79 183-255 (856)
129 PRK06416 dihydrolipoamide dehy 90.8 0.84 1.8E-05 42.7 7.1 47 25-71 226-275 (462)
130 TIGR03140 AhpF alkyl hydropero 90.6 0.71 1.5E-05 43.8 6.6 57 12-68 265-323 (515)
131 PLN02172 flavin-containing mon 90.6 0.69 1.5E-05 43.2 6.3 59 11-69 108-174 (461)
132 PF12831 FAD_oxidored: FAD dep 90.4 0.081 1.7E-06 48.9 0.0 66 9-75 85-156 (428)
133 TIGR03378 glycerol3P_GlpB glyc 90.3 1.2 2.5E-05 40.9 7.3 59 11-69 260-324 (419)
134 TIGR01350 lipoamide_DH dihydro 90.2 1.1 2.4E-05 41.8 7.5 56 16-71 213-272 (461)
135 TIGR01424 gluta_reduc_2 glutat 90.1 1.1 2.4E-05 41.7 7.3 46 25-70 220-265 (446)
136 TIGR03377 glycerol3P_GlpA glyc 90.0 6.7 0.00015 37.3 12.6 68 10-77 124-200 (516)
137 PRK07846 mycothione reductase; 89.9 0.95 2.1E-05 42.2 6.6 46 25-70 219-264 (451)
138 PRK09231 fumarate reductase fl 89.5 1.2 2.5E-05 43.1 7.1 57 15-71 134-199 (582)
139 PF06039 Mqo: Malate:quinone o 89.3 1.4 3E-05 40.6 6.9 70 10-79 177-256 (488)
140 TIGR00551 nadB L-aspartate oxi 87.9 1.2 2.6E-05 42.0 5.9 59 14-72 128-193 (488)
141 TIGR03452 mycothione_red mycot 87.7 1.8 3.9E-05 40.4 6.9 46 25-70 222-267 (452)
142 PTZ00363 rab-GDP dissociation 87.4 1.7 3.8E-05 40.3 6.5 53 15-67 233-289 (443)
143 TIGR00136 gidA glucose-inhibit 87.3 1.9 4.2E-05 41.5 6.9 59 10-69 92-155 (617)
144 PRK07818 dihydrolipoamide dehy 87.3 2.3 5E-05 39.8 7.4 56 16-71 215-276 (466)
145 COG1232 HemY Protoporphyrinoge 87.3 25 0.00054 32.7 15.7 61 14-76 215-275 (444)
146 KOG1346 Programmed cell death 87.1 0.5 1.1E-05 42.6 2.6 65 11-75 390-458 (659)
147 TIGR03862 flavo_PP4765 unchara 86.9 2.3 4.9E-05 38.6 6.8 62 14-77 86-161 (376)
148 KOG0685 Flavin-containing amin 86.8 1.3 2.7E-05 40.8 5.1 49 15-63 224-281 (498)
149 PRK07804 L-aspartate oxidase; 86.3 1.8 3.9E-05 41.4 6.1 57 15-71 145-213 (541)
150 PRK06327 dihydrolipoamide dehy 86.3 2.4 5.3E-05 39.8 7.0 47 25-71 237-287 (475)
151 TIGR02374 nitri_red_nirB nitri 86.2 2.5 5.5E-05 42.4 7.4 45 25-69 195-239 (785)
152 COG1249 Lpd Pyruvate/2-oxoglut 86.0 3.1 6.7E-05 38.8 7.3 47 25-71 227-275 (454)
153 PTZ00052 thioredoxin reductase 85.6 3 6.4E-05 39.5 7.2 47 25-71 235-281 (499)
154 TIGR01423 trypano_reduc trypan 85.3 3.1 6.8E-05 39.2 7.2 47 25-71 244-291 (486)
155 KOG1336 Monodehydroascorbate/f 85.1 2 4.3E-05 39.6 5.4 45 26-70 269-315 (478)
156 TIGR01176 fum_red_Fp fumarate 84.9 3.4 7.5E-05 39.9 7.4 57 14-70 132-197 (580)
157 TIGR01421 gluta_reduc_1 glutat 84.8 3.3 7.2E-05 38.6 7.1 47 25-71 220-268 (450)
158 TIGR01812 sdhA_frdA_Gneg succi 84.5 3.1 6.7E-05 40.0 6.9 58 15-72 130-195 (566)
159 PRK06115 dihydrolipoamide dehy 84.4 3.6 7.8E-05 38.5 7.2 46 25-70 228-278 (466)
160 TIGR03364 HpnW_proposed FAD de 84.4 3.4 7.3E-05 37.1 6.8 55 10-69 141-198 (365)
161 PTZ00318 NADH dehydrogenase-li 84.3 3.3 7.1E-05 38.3 6.8 40 25-68 241-280 (424)
162 PRK06912 acoL dihydrolipoamide 84.2 4.2 9.2E-05 38.0 7.5 47 25-71 224-271 (458)
163 PF13434 K_oxygenase: L-lysine 84.1 2.4 5.3E-05 37.9 5.6 41 27-67 294-340 (341)
164 TIGR01813 flavo_cyto_c flavocy 83.9 3.6 7.7E-05 38.1 6.9 56 14-69 130-193 (439)
165 PRK08010 pyridine nucleotide-d 83.6 4.1 8.9E-05 37.8 7.2 54 16-70 201-256 (441)
166 PRK06370 mercuric reductase; V 83.6 4.7 0.0001 37.7 7.6 47 25-71 225-274 (463)
167 PRK11101 glpA sn-glycerol-3-ph 83.5 3.4 7.4E-05 39.6 6.7 68 10-77 145-221 (546)
168 COG0578 GlpA Glycerol-3-phosph 82.9 44 0.00096 31.8 13.6 53 25-77 177-235 (532)
169 TIGR03385 CoA_CoA_reduc CoA-di 82.9 4.6 0.0001 37.2 7.2 43 25-69 192-234 (427)
170 TIGR03169 Nterm_to_SelD pyridi 82.7 3.8 8.2E-05 36.8 6.4 40 25-68 204-243 (364)
171 TIGR02485 CobZ_N-term precorri 82.3 4.7 0.0001 37.3 7.0 59 15-73 124-188 (432)
172 TIGR02053 MerA mercuric reduct 82.2 4.6 0.0001 37.7 7.0 47 25-71 220-269 (463)
173 COG1233 Phytoene dehydrogenase 81.9 2.4 5.2E-05 40.0 4.9 53 14-66 224-279 (487)
174 PRK05329 anaerobic glycerol-3- 81.8 5.3 0.00011 36.9 7.0 53 15-67 260-317 (422)
175 PRK14694 putative mercuric red 81.8 5.9 0.00013 37.1 7.5 56 15-71 219-276 (468)
176 PRK14989 nitrite reductase sub 81.6 5.3 0.00011 40.5 7.4 46 25-70 200-247 (847)
177 KOG2820 FAD-dependent oxidored 81.6 34 0.00073 30.5 11.2 63 17-79 156-225 (399)
178 TIGR01438 TGR thioredoxin and 81.0 6.2 0.00013 37.2 7.3 46 25-70 233-281 (484)
179 PRK08274 tricarballylate dehyd 80.6 5 0.00011 37.5 6.6 58 14-71 131-195 (466)
180 PF00743 FMO-like: Flavin-bind 80.4 3.6 7.8E-05 39.2 5.5 60 10-69 80-151 (531)
181 PRK07251 pyridine nucleotide-d 79.9 6.2 0.00013 36.6 6.9 45 25-70 211-255 (438)
182 PRK14727 putative mercuric red 79.1 7.5 0.00016 36.6 7.2 46 25-71 241-286 (479)
183 COG2072 TrkA Predicted flavopr 79.0 6.3 0.00014 36.7 6.6 58 12-69 84-145 (443)
184 PRK06481 fumarate reductase fl 78.7 7.8 0.00017 36.7 7.3 56 15-70 191-253 (506)
185 PRK06467 dihydrolipoamide dehy 78.4 6.9 0.00015 36.7 6.8 45 27-71 229-277 (471)
186 PRK09564 coenzyme A disulfide 77.9 8.5 0.00018 35.6 7.2 54 15-69 192-247 (444)
187 PRK05945 sdhA succinate dehydr 77.8 8.9 0.00019 37.0 7.4 57 14-70 135-199 (575)
188 PRK13512 coenzyme A disulfide 77.8 8 0.00017 35.9 6.9 42 25-70 202-243 (438)
189 PRK06175 L-aspartate oxidase; 77.6 8.3 0.00018 35.8 7.0 55 15-69 129-190 (433)
190 KOG1399 Flavin-containing mono 75.2 8.6 0.00019 35.8 6.3 63 5-67 81-152 (448)
191 PF13434 K_oxygenase: L-lysine 74.7 6.5 0.00014 35.2 5.3 67 8-74 89-165 (341)
192 PRK06292 dihydrolipoamide dehy 74.1 13 0.00029 34.6 7.4 56 16-71 212-271 (460)
193 PRK13748 putative mercuric red 73.9 13 0.00028 35.7 7.5 45 25-70 323-367 (561)
194 COG1251 NirB NAD(P)H-nitrite r 73.9 2.3 4.9E-05 41.4 2.2 52 26-77 201-254 (793)
195 PRK08401 L-aspartate oxidase; 73.7 11 0.00025 35.2 6.8 57 14-72 120-179 (466)
196 PRK07121 hypothetical protein; 73.7 12 0.00026 35.3 7.0 55 15-69 178-240 (492)
197 PRK05976 dihydrolipoamide dehy 73.4 14 0.0003 34.7 7.3 46 25-70 234-283 (472)
198 PRK06069 sdhA succinate dehydr 73.1 11 0.00023 36.5 6.6 57 16-72 139-204 (577)
199 PF01946 Thi4: Thi4 family; PD 71.8 17 0.00037 30.2 6.5 66 7-72 89-169 (230)
200 PRK06134 putative FAD-binding 71.7 15 0.00032 35.5 7.3 54 16-69 219-279 (581)
201 PF09465 LBR_tudor: Lamin-B re 71.1 12 0.00027 23.4 4.2 31 25-55 17-47 (55)
202 PTZ00058 glutathione reductase 70.8 18 0.00038 34.9 7.5 46 25-70 291-338 (561)
203 PRK09754 phenylpropionate diox 70.5 10 0.00022 34.7 5.6 42 25-68 71-112 (396)
204 COG3486 IucD Lysine/ornithine 70.5 13 0.00027 33.9 5.9 50 25-74 291-346 (436)
205 COG0492 TrxB Thioredoxin reduc 70.1 18 0.00039 31.8 6.8 56 11-68 58-115 (305)
206 COG1252 Ndh NADH dehydrogenase 69.5 13 0.00028 34.1 5.9 44 26-73 223-268 (405)
207 KOG1335 Dihydrolipoamide dehyd 68.8 19 0.00042 32.6 6.6 53 15-69 257-315 (506)
208 TIGR01292 TRX_reduct thioredox 66.9 19 0.00042 30.9 6.5 51 16-67 182-237 (300)
209 TIGR03169 Nterm_to_SelD pyridi 66.6 9.9 0.00022 34.1 4.7 41 26-69 68-108 (364)
210 PRK06854 adenylylsulfate reduc 65.5 23 0.00051 34.5 7.2 57 13-69 131-196 (608)
211 PRK06263 sdhA succinate dehydr 65.2 20 0.00044 34.3 6.7 56 14-69 134-198 (543)
212 PF00890 FAD_binding_2: FAD bi 64.8 21 0.00046 32.7 6.6 58 12-69 139-204 (417)
213 PRK09564 coenzyme A disulfide 64.6 18 0.00038 33.5 6.1 44 26-69 70-116 (444)
214 PRK08071 L-aspartate oxidase; 64.4 17 0.00037 34.5 6.0 55 15-69 131-191 (510)
215 COG1635 THI4 Ribulose 1,5-bisp 63.7 49 0.0011 27.7 7.5 68 7-74 102-184 (262)
216 PRK10262 thioredoxin reductase 63.5 25 0.00053 31.0 6.5 52 16-67 187-247 (321)
217 KOG0042 Glycerol-3-phosphate d 61.5 40 0.00087 32.1 7.4 62 13-74 225-293 (680)
218 PLN02546 glutathione reductase 61.3 27 0.00059 33.6 6.7 47 25-71 306-353 (558)
219 PRK12837 3-ketosteroid-delta-1 60.8 35 0.00076 32.4 7.4 43 25-67 187-235 (513)
220 PRK08275 putative oxidoreducta 60.0 29 0.00063 33.4 6.7 56 15-70 138-202 (554)
221 KOG1336 Monodehydroascorbate/f 59.7 16 0.00035 33.8 4.6 39 26-66 141-179 (478)
222 TIGR03385 CoA_CoA_reduc CoA-di 59.2 25 0.00055 32.3 6.0 43 26-68 58-103 (427)
223 KOG2853 Possible oxidoreductas 57.9 1.4E+02 0.0031 26.8 15.3 33 45-77 295-330 (509)
224 PRK07573 sdhA succinate dehydr 56.6 42 0.00091 33.0 7.3 53 18-70 174-234 (640)
225 TIGR02374 nitri_red_nirB nitri 56.6 21 0.00046 35.9 5.4 42 25-68 67-108 (785)
226 PRK12842 putative succinate de 56.4 43 0.00092 32.4 7.2 54 15-68 215-275 (574)
227 PRK04965 NADH:flavorubredoxin 56.4 23 0.00049 32.0 5.2 41 26-69 72-112 (377)
228 PRK13512 coenzyme A disulfide 55.7 31 0.00067 32.0 6.0 45 25-69 71-118 (438)
229 PRK12843 putative FAD-binding 55.7 46 0.00099 32.2 7.3 58 15-72 222-286 (578)
230 PRK08205 sdhA succinate dehydr 55.7 42 0.0009 32.5 7.0 57 14-70 140-208 (583)
231 PF07992 Pyr_redox_2: Pyridine 55.4 10 0.00022 30.5 2.5 45 25-69 71-123 (201)
232 PRK09077 L-aspartate oxidase; 55.4 33 0.00071 32.8 6.2 59 14-72 138-211 (536)
233 TIGR03140 AhpF alkyl hydropero 55.0 39 0.00084 32.2 6.6 43 25-67 401-449 (515)
234 PRK14989 nitrite reductase sub 52.3 28 0.00062 35.4 5.4 43 25-69 72-114 (847)
235 COG0446 HcaD Uncharacterized N 51.7 48 0.001 29.9 6.6 43 26-68 192-237 (415)
236 PRK07843 3-ketosteroid-delta-1 50.6 69 0.0015 30.9 7.6 54 16-69 210-270 (557)
237 PRK07512 L-aspartate oxidase; 50.1 37 0.00079 32.3 5.6 55 15-69 137-198 (513)
238 TIGR01811 sdhA_Bsu succinate d 49.7 64 0.0014 31.4 7.3 46 25-70 146-198 (603)
239 PLN00128 Succinate dehydrogena 48.5 56 0.0012 32.1 6.7 57 14-70 187-252 (635)
240 PTZ00139 Succinate dehydrogena 48.2 54 0.0012 32.0 6.5 55 15-69 167-230 (617)
241 KOG3851 Sulfide:quinone oxidor 47.4 16 0.00035 32.3 2.4 35 33-69 112-146 (446)
242 PRK06452 sdhA succinate dehydr 47.2 72 0.0016 30.8 7.1 56 15-70 137-200 (566)
243 PTZ00153 lipoamide dehydrogena 46.9 65 0.0014 31.8 6.8 46 25-70 367-429 (659)
244 PRK09078 sdhA succinate dehydr 46.5 67 0.0014 31.3 6.9 55 15-69 150-213 (598)
245 PLN02661 Putative thiazole syn 46.3 1.2E+02 0.0025 27.5 7.7 55 14-68 172-244 (357)
246 TIGR01816 sdhA_forward succina 46.2 84 0.0018 30.3 7.4 56 15-70 120-183 (565)
247 PRK07057 sdhA succinate dehydr 45.9 65 0.0014 31.3 6.7 56 15-70 149-213 (591)
248 PTZ00318 NADH dehydrogenase-li 45.6 67 0.0015 29.6 6.5 42 192-233 308-349 (424)
249 TIGR03143 AhpF_homolog putativ 45.3 56 0.0012 31.4 6.1 56 12-69 58-115 (555)
250 PRK15317 alkyl hydroperoxide r 45.2 64 0.0014 30.7 6.5 43 25-67 400-448 (517)
251 PRK07845 flavoprotein disulfid 44.7 72 0.0016 29.9 6.6 43 26-69 106-152 (466)
252 PRK10262 thioredoxin reductase 44.5 73 0.0016 27.9 6.4 53 14-68 63-117 (321)
253 PRK14694 putative mercuric red 44.2 58 0.0013 30.5 5.9 40 26-68 111-152 (468)
254 KOG1346 Programmed cell death 43.5 33 0.00071 31.5 3.8 58 7-69 255-312 (659)
255 PF00732 GMC_oxred_N: GMC oxid 43.4 69 0.0015 27.6 6.0 56 14-69 193-259 (296)
256 PRK12844 3-ketosteroid-delta-1 42.9 93 0.002 30.0 7.2 55 15-69 209-270 (557)
257 PRK12835 3-ketosteroid-delta-1 42.6 82 0.0018 30.6 6.8 45 25-69 226-276 (584)
258 KOG0029 Amine oxidase [Seconda 42.4 62 0.0014 30.7 5.8 41 26-66 228-269 (501)
259 KOG0174 20S proteasome, regula 41.8 36 0.00078 27.5 3.4 19 25-43 12-30 (224)
260 KOG4254 Phytoene desaturase [C 41.5 41 0.00088 31.3 4.1 50 25-74 277-327 (561)
261 PRK13977 myosin-cross-reactive 41.4 81 0.0018 30.5 6.3 54 14-67 226-292 (576)
262 PRK08958 sdhA succinate dehydr 40.7 1E+02 0.0023 29.9 7.2 57 14-70 143-208 (588)
263 PLN02172 flavin-containing mon 40.4 32 0.00068 32.3 3.5 40 26-68 249-288 (461)
264 PRK05675 sdhA succinate dehydr 40.2 99 0.0021 29.9 6.9 57 14-70 126-191 (570)
265 PRK12845 3-ketosteroid-delta-1 39.5 1.1E+02 0.0024 29.6 7.1 57 16-72 219-282 (564)
266 PRK12839 hypothetical protein; 39.0 1.2E+02 0.0025 29.5 7.2 58 12-69 212-277 (572)
267 PRK08626 fumarate reductase fl 37.5 1.2E+02 0.0026 30.0 7.1 55 16-70 160-222 (657)
268 PF10387 DUF2442: Protein of u 37.3 60 0.0013 21.8 3.7 25 35-59 1-26 (79)
269 TIGR01372 soxA sarcosine oxida 36.7 1E+02 0.0022 32.2 6.7 46 25-70 364-413 (985)
270 PF01356 A_amylase_inhib: Alph 36.3 1.1E+02 0.0024 19.9 4.3 37 24-60 4-44 (68)
271 TIGR01810 betA choline dehydro 35.9 80 0.0017 30.1 5.6 53 16-68 196-256 (532)
272 TIGR01424 gluta_reduc_2 glutat 32.4 1.3E+02 0.0027 28.0 6.2 40 25-68 103-142 (446)
273 PRK12770 putative glutamate sy 32.1 66 0.0014 28.7 4.1 36 192-232 315-350 (352)
274 COG1252 Ndh NADH dehydrogenase 32.0 1E+02 0.0022 28.4 5.2 40 191-233 290-333 (405)
275 PRK12810 gltD glutamate syntha 31.8 96 0.0021 29.1 5.3 37 192-233 430-466 (471)
276 PRK12834 putative FAD-binding 31.7 2E+02 0.0043 27.7 7.5 49 26-74 166-233 (549)
277 COG0029 NadB Aspartate oxidase 31.6 69 0.0015 30.1 4.1 58 15-72 134-200 (518)
278 PRK12770 putative glutamate sy 31.1 1.2E+02 0.0025 27.1 5.5 45 25-69 223-287 (352)
279 COG0445 GidA Flavin-dependent 30.3 50 0.0011 31.6 3.0 62 5-67 86-157 (621)
280 PRK05976 dihydrolipoamide dehy 30.2 1.6E+02 0.0034 27.6 6.4 42 26-68 106-154 (472)
281 COG3634 AhpF Alkyl hydroperoxi 30.1 1.7E+02 0.0037 26.5 6.0 61 14-77 266-331 (520)
282 PRK06467 dihydrolipoamide dehy 30.0 1.5E+02 0.0032 27.8 6.2 41 25-68 106-148 (471)
283 PF00996 GDI: GDP dissociation 29.6 1.4E+02 0.003 27.8 5.8 50 15-64 233-285 (438)
284 PRK07803 sdhA succinate dehydr 29.4 1.3E+02 0.0027 29.6 5.8 44 27-70 166-215 (626)
285 PRK02106 choline dehydrogenase 29.3 1.6E+02 0.0034 28.3 6.4 44 25-68 214-262 (560)
286 smart00035 CLa CLUSTERIN alpha 28.8 2.2E+02 0.0049 23.4 6.0 57 203-278 87-143 (216)
287 COG4529 Uncharacterized protei 27.9 1.8E+02 0.0039 27.3 6.1 57 11-67 97-163 (474)
288 PRK14727 putative mercuric red 27.8 1.9E+02 0.004 27.2 6.5 28 41-68 133-162 (479)
289 PRK13984 putative oxidoreducta 27.4 76 0.0016 30.9 3.9 36 192-233 568-603 (604)
290 KOG2665 Predicted FAD-dependen 27.0 1.4E+02 0.003 26.7 4.8 49 26-74 210-263 (453)
291 TIGR03452 mycothione_red mycot 27.0 98 0.0021 28.8 4.4 39 26-69 106-144 (452)
292 TIGR02462 pyranose_ox pyranose 26.6 1.7E+02 0.0036 28.2 5.9 51 24-74 226-285 (544)
293 PLN02507 glutathione reductase 25.9 2.5E+02 0.0055 26.6 7.0 41 26-69 138-180 (499)
294 PRK08351 DNA-directed RNA poly 25.4 70 0.0015 20.6 2.2 24 57-80 31-54 (61)
295 PRK12814 putative NADPH-depend 25.3 2.4E+02 0.0053 27.8 7.0 43 25-67 374-436 (652)
296 COG2907 Predicted NAD/FAD-bind 24.5 94 0.002 28.0 3.5 41 27-67 232-272 (447)
297 COG1995 PdxA Pyridoxal phospha 24.4 1E+02 0.0022 27.3 3.7 38 191-233 200-237 (332)
298 PRK12810 gltD glutamate syntha 24.1 1.1E+02 0.0024 28.7 4.2 34 26-68 207-240 (471)
299 PF00743 FMO-like: Flavin-bind 23.1 71 0.0015 30.6 2.7 23 46-68 309-332 (531)
300 PLN02815 L-aspartate oxidase 23.1 1.9E+02 0.0041 28.2 5.7 56 15-70 156-224 (594)
301 PF10819 DUF2564: Protein of u 23.0 89 0.0019 21.2 2.4 31 197-227 18-49 (79)
302 PRK06416 dihydrolipoamide dehy 22.8 2.5E+02 0.0054 26.1 6.3 41 25-68 105-146 (462)
303 PRK11749 dihydropyrimidine deh 22.7 1.6E+02 0.0035 27.4 5.0 36 193-233 418-453 (457)
304 TIGR01316 gltA glutamate synth 22.6 2.7E+02 0.0059 25.9 6.5 33 193-230 416-448 (449)
305 KOG2404 Fumarate reductase, fl 22.4 1E+02 0.0022 27.5 3.3 48 25-72 157-210 (477)
306 PTZ00306 NADH-dependent fumara 22.2 3.3E+02 0.0072 29.1 7.6 45 25-69 560-621 (1167)
307 COG0090 RplB Ribosomal protein 22.1 1.7E+02 0.0038 25.0 4.4 32 33-67 76-111 (275)
308 COG3486 IucD Lysine/ornithine 22.0 2E+02 0.0043 26.5 5.1 66 5-70 89-159 (436)
309 PRK11749 dihydropyrimidine deh 21.4 1.3E+02 0.0027 28.1 4.1 33 26-67 204-236 (457)
310 PRK01909 pdxA 4-hydroxythreoni 21.4 1.4E+02 0.0031 26.6 4.0 38 191-233 197-234 (329)
311 PRK08010 pyridine nucleotide-d 21.0 3.4E+02 0.0074 25.0 6.8 42 25-69 90-132 (441)
312 TIGR00557 pdxA 4-hydroxythreon 20.7 1.5E+02 0.0032 26.3 4.0 38 191-233 194-231 (320)
313 PRK05312 pdxA 4-hydroxythreoni 20.6 1.5E+02 0.0032 26.6 4.0 38 191-233 206-243 (336)
314 PRK07846 mycothione reductase; 20.6 1.8E+02 0.0039 27.1 4.9 32 192-228 292-323 (451)
315 PRK13748 putative mercuric red 20.4 3E+02 0.0066 26.3 6.5 41 26-69 203-245 (561)
316 PRK03371 pdxA 4-hydroxythreoni 20.2 1.5E+02 0.0032 26.4 3.9 38 191-233 200-237 (326)
317 PRK06370 mercuric reductase; V 20.2 2.5E+02 0.0055 26.1 5.8 38 26-69 109-146 (463)
No 1
>PRK06753 hypothetical protein; Provisional
Probab=100.00 E-value=8.9e-37 Score=275.96 Aligned_cols=271 Identities=25% Similarity=0.415 Sum_probs=210.2
Q ss_pred ccceeeeHHHHHHHHHhhCCCCcEEecceEEEEEeeCCeeEEEecCCCEEeecEEEecCCCchhhhhhhCCC-CCccccc
Q 021278 6 HEMRCVRRKLLLETLAKELPSGTIRYSSQVVSIEESGHFKLLHLADGTILKTKVLIGCDGVNSIVAKWLGFK-NPAFVGR 84 (315)
Q Consensus 6 ~~~~~i~R~~L~~~L~~~~~~~~i~~~~~v~~~~~~~~~~~v~~~~g~~~~ad~vVgADG~~S~vr~~l~~~-~~~~~~~ 84 (315)
...+.++|..|.+.|.+++++.+|++|++|++++.++++++|++++|+++++|+||||||.+|.||+.++.. ...+.+.
T Consensus 90 ~~~~~i~R~~l~~~L~~~~~~~~i~~~~~v~~i~~~~~~v~v~~~~g~~~~~~~vigadG~~S~vR~~~~~~~~~~~~g~ 169 (373)
T PRK06753 90 TLNVTLHRQTLIDIIKSYVKEDAIFTGKEVTKIENETDKVTIHFADGESEAFDLCIGADGIHSKVRQSVNADSKVRYQGY 169 (373)
T ss_pred CccccccHHHHHHHHHHhCCCceEEECCEEEEEEecCCcEEEEECCCCEEecCEEEECCCcchHHHHHhCCCCCceEcce
Confidence 345789999999999999888899999999999988888999999999999999999999999999999654 3455667
Q ss_pred eEEEeeeecCCCCCCCCceEEEecCCeEEEEEecCCCeEEEEEEeeCCCCCcccccChHHHHHHHHHHhcCCChHHHHHH
Q 021278 85 SAIRGYSDFKGSHGFEPNFLQFFGKGLRSGFIPCDDQTIYWFFTWTSSSQDKELEDHSAELKQFVLGKLHDLPAQVKAVI 164 (315)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (315)
.++.+.+...... .......+++.+++++++|..++..+|.+.+..+....... ....+.+.+.+.++.+.++.++
T Consensus 170 ~~~~~~~~~~~~~-~~~~~~~~~~~~g~~~~~p~~~~~~~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~~~~ 245 (373)
T PRK06753 170 TCFRGLIDDIDLK-LPDCAKEYWGTKGRFGIVPLLNNQAYWFITINAKERDPKYS---SFGKPHLQAYFNHYPNEVREIL 245 (373)
T ss_pred EEEEEEecccccc-CccceEEEEcCCCEEEEEEcCCCeEEEEEEeccccCCcccc---cccHHHHHHHHhcCChHHHHHH
Confidence 7777765433211 12233445566667789999999888877664332211111 1123566677778888888888
Q ss_pred HcCCCcceeeccccccCcccccccCcCCCcEEEeccCCCCCCCCCccchhhhhhHHHHHHHHHHHHHhccCCCCCCchhh
Q 021278 165 EKTPLDSIISSRLQYRQPQEVLWGNISRGSVCVAGDALHPMTPDIGQGGCAALEDGIVLARCINEALKTKQGVGEEDEEE 244 (315)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~LiGDAAh~~~P~~G~G~~~al~da~~La~~l~~~~~~~~~~~~~~~~~ 244 (315)
+..........++....+ .++|..+||+|||||||+|+|+.|||+|+||+||..|+++|.. .
T Consensus 246 ~~~~~~~~~~~~~~~~~~----~~~~~~~rv~LiGDAAh~~~P~~GqG~n~ai~Da~~L~~~L~~---~----------- 307 (373)
T PRK06753 246 DKQSETGILHHDIYDLKP----LKSFVYGRIVLLGDAAHATTPNMGQGAGQAMEDAIVLANCLNA---Y----------- 307 (373)
T ss_pred HhCCcccceeeccccccc----cccccCCCEEEEecccccCCCCcCccHHHHHHHHHHHHHHhhh---c-----------
Confidence 765432323333333333 2478999999999999999999999999999999999999953 1
Q ss_pred hhHHHHHHHHHHHHhhhhhHHHHHHHHHHhhhhhccCchHHHHHHHHHHHHHHHhhh
Q 021278 245 FNKRVEMGLKRYAKERRWRCFELISIAYLVGSIQQSDGKILNFLRDKILASFLVGLL 301 (315)
Q Consensus 245 s~~~~~~~l~~Y~~~r~~~~~~~~~~s~~~~~~~~~~~~~~~~~r~~~l~~~~~~~~ 301 (315)
+.+++|+.|+++|++++...++.++.+..+++.+.+....+|+..++.......
T Consensus 308 ---~~~~al~~Y~~~r~~~~~~~~~~s~~~~~~~~~~~~~~~~~r~~~l~~~~~~~~ 361 (373)
T PRK06753 308 ---DFEKALQRYDKIRVKHTAKVIKRSRKIGKIAQIESKLLVALRNRVMKRMPNALA 361 (373)
T ss_pred ---cHHHHHHHHHHHhhHHHHHHHHHHHHHhHHHhcCCchHHHHHHHHHHhCChhhh
Confidence 568899999999999999999999999999999898899999999987654443
No 2
>PRK06475 salicylate hydroxylase; Provisional
Probab=100.00 E-value=3.6e-36 Score=274.08 Aligned_cols=268 Identities=20% Similarity=0.207 Sum_probs=201.1
Q ss_pred ccceeeeHHHHHHHHHhhC---CCCcEEecceEEEEEeeCCeeEEEec---CCCEEeecEEEecCCCchhhhhhhCCCCC
Q 021278 6 HEMRCVRRKLLLETLAKEL---PSGTIRYSSQVVSIEESGHFKLLHLA---DGTILKTKVLIGCDGVNSIVAKWLGFKNP 79 (315)
Q Consensus 6 ~~~~~i~R~~L~~~L~~~~---~~~~i~~~~~v~~~~~~~~~~~v~~~---~g~~~~ad~vVgADG~~S~vr~~l~~~~~ 79 (315)
..++.++|..|.+.|++++ ++++++++++|++++.++++++|++. ++++++||+||||||.+|.||+.++...+
T Consensus 99 ~~~~~i~r~~l~~~L~~~~~~~~~i~v~~~~~v~~~~~~~~~v~v~~~~~~~~~~~~adlvIgADG~~S~vR~~~~~~~~ 178 (400)
T PRK06475 99 HPYIVCHRADLQSALLDACRNNPGIEIKLGAEMTSQRQTGNSITATIIRTNSVETVSAAYLIACDGVWSMLRAKAGFSKA 178 (400)
T ss_pred CCceeECHHHHHHHHHHHHHhcCCcEEEECCEEEEEecCCCceEEEEEeCCCCcEEecCEEEECCCccHhHHhhcCCCCC
Confidence 3456799999999999987 35899999999999988888888873 34589999999999999999999977777
Q ss_pred ccccceEEEeeeecCCCC-------CCCCceEEEecCCeEEEEEecCCCeEEEEEEeeCCCCCcccccChHHHHHHHHHH
Q 021278 80 AFVGRSAIRGYSDFKGSH-------GFEPNFLQFFGKGLRSGFIPCDDQTIYWFFTWTSSSQDKELEDHSAELKQFVLGK 152 (315)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (315)
.|.+..++++.+..+... ........+++++.++.++|+.++..++++.+.......... ......+.+.+.
T Consensus 179 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~ 257 (400)
T PRK06475 179 RFSGHIAWRTTLAADALPASFLSAMPEHKAVSAWLGNKAHFIAYPVKGGKFFNFVAITGGENPGEVW-SKTGDKAHLKSI 257 (400)
T ss_pred CcCCceEEEEEeehhhcchhhhhhcccCCceEEEEcCCCEEEEEEccCCcEEEEEEEEcCCCCcccC-CCCCCHHHHHHH
Confidence 788888888887654211 112234566788889999999988766655543322111111 111123577778
Q ss_pred hcCCChHHHHHHHcCCCcceeeccccccCcccccccCcCCCcEEEeccCCCCCCCCCccchhhhhhHHHHHHHHHHHHHh
Q 021278 153 LHDLPAQVKAVIEKTPLDSIISSRLQYRQPQEVLWGNISRGSVCVAGDALHPMTPDIGQGGCAALEDGIVLARCINEALK 232 (315)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~LiGDAAh~~~P~~G~G~~~al~da~~La~~l~~~~~ 232 (315)
+.+|.+.+..+++..+ ....+++....+. +.|..|||+|||||||+++|+.|||+|+||+||..|+++|..
T Consensus 258 ~~~~~~~~~~~i~~~~--~~~~~~l~~~~~~----~~~~~grvvLiGDAAH~~~P~~GqG~n~aieDa~~La~~L~~--- 328 (400)
T PRK06475 258 YADWNKPVLQILAAID--EWTYWPLFEMADA----QFVGPDRTIFLGDASHAVTPFAAQGAAMAIEDAAALAEALDS--- 328 (400)
T ss_pred hcCCChHHHHHHhcCC--ceeECcCcccCCC----cceecCCEEEEecccccCCchhhhhHHHHHHHHHHHHHHHhc---
Confidence 8899999888887654 3344555443332 234679999999999999999999999999999999999953
Q ss_pred ccCCCCCCchhhhhHHHHHHHHHHHHhhhhhHHHHHHHHHHhhhhhccCchHHHHHHHHHHHHHHH
Q 021278 233 TKQGVGEEDEEEFNKRVEMGLKRYAKERRWRCFELISIAYLVGSIQQSDGKILNFLRDKILASFLV 298 (315)
Q Consensus 233 ~~~~~~~~~~~~s~~~~~~~l~~Y~~~r~~~~~~~~~~s~~~~~~~~~~~~~~~~~r~~~l~~~~~ 298 (315)
. +...+|+.|++.|++++..++..++.....++.. ++....|+..+.....
T Consensus 329 ~--------------~~~~aL~~Ye~~R~~r~~~~~~~s~~~~~~~~~~-~~~~~~r~~~~~~~~~ 379 (400)
T PRK06475 329 D--------------DQSAGLKRFDSVRKERIAAVAKRGQLNRFAYHAT-GIFALGRNMLFAIRSP 379 (400)
T ss_pred C--------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHhhcCh
Confidence 1 4668999999999999999999998655555544 4567778888865543
No 3
>TIGR03219 salicylate_mono salicylate 1-monooxygenase. Members of this protein family are salicylate 1-monooxygenase, also called salicylate hydroxylase. This enzyme converts salicylate to catechol, which is a common intermediate in the degradation of a number of aromatic compounds (phenol, toluene, benzoate, etc.). The gene for this protein may occur in catechol degradation genes, such as those of the meta-cleavage pathway.
Probab=100.00 E-value=6e-36 Score=273.94 Aligned_cols=263 Identities=22% Similarity=0.277 Sum_probs=201.5
Q ss_pred cceeeeHHHHHHHHHhhCCCCcEEecceEEEEEeeCCeeEEEecCCCEEeecEEEecCCCchhhhhhhC------CCCCc
Q 021278 7 EMRCVRRKLLLETLAKELPSGTIRYSSQVVSIEESGHFKLLHLADGTILKTKVLIGCDGVNSIVAKWLG------FKNPA 80 (315)
Q Consensus 7 ~~~~i~R~~L~~~L~~~~~~~~i~~~~~v~~~~~~~~~~~v~~~~g~~~~ad~vVgADG~~S~vr~~l~------~~~~~ 80 (315)
....++|..|.+.|.+.+++..++++++|++++.++++++|.+++|++++||+||||||.+|.||+.+- ...+.
T Consensus 98 ~~~~i~R~~l~~~L~~~~~~~~v~~~~~v~~i~~~~~~~~v~~~~g~~~~ad~vVgADG~~S~vR~~l~~~~~~~~~~p~ 177 (414)
T TIGR03219 98 GQSSVHRADFLDALLKHLPEGIASFGKRATQIEEQAEEVQVLFTDGTEYRCDLLIGADGIKSALRDYVLQGQGQAPVRPR 177 (414)
T ss_pred CcccCCHHHHHHHHHHhCCCceEEcCCEEEEEEecCCcEEEEEcCCCEEEeeEEEECCCccHHHHHHhcCccCCCCCCcc
Confidence 335789999999999999888899999999999988889999999999999999999999999999872 12456
Q ss_pred cccceEEEeeeecCCC----------CCCCCceEEEecCCeEEEEEecCCCeEEEEEEeeCCCCC------cccccChHH
Q 021278 81 FVGRSAIRGYSDFKGS----------HGFEPNFLQFFGKGLRSGFIPCDDQTIYWFFTWTSSSQD------KELEDHSAE 144 (315)
Q Consensus 81 ~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~------~~~~~~~~~ 144 (315)
+.+..++++.+..... .........+++.+.+++++|+.++...+++.+..++.. .......+.
T Consensus 178 ~~g~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (414)
T TIGR03219 178 FSGTCAYRGLVDSLQLREAYRAAGLDEHLVDVPQMYLGLDGHILTFPVRQGRLINVVAFISDRSQPKPTWPSDTPWVREA 257 (414)
T ss_pred ccCcEEEEEEeeHHHHhhhhccccccccccccceEEEcCCCeEEEEECCCCcEEEEEEEEcCcccccCCCCCCCcccCcc
Confidence 7788888887754321 011122346678888888999998876554444322211 111111233
Q ss_pred HHHHHHHHhcCCChHHHHHHHcCCCcceeeccccccCcccccccCcCCCcEEEeccCCCCCCCCCccchhhhhhHHHHHH
Q 021278 145 LKQFVLGKLHDLPAQVKAVIEKTPLDSIISSRLQYRQPQEVLWGNISRGSVCVAGDALHPMTPDIGQGGCAALEDGIVLA 224 (315)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~LiGDAAh~~~P~~G~G~~~al~da~~La 224 (315)
.++.+.+.+.+|++.+..++...+.. ..+++....+ +++|++|||+|||||||.|+|+.|||+|+||+||..|+
T Consensus 258 ~~~~l~~~~~~~~~~v~~~~~~~~~~--~~~~~~~~~~----~~~w~~grv~LiGDAAH~m~P~~GqGa~~AieDA~~La 331 (414)
T TIGR03219 258 TQREMLDAFAGWGDAARALLECIPAP--TLWALHDLAE----LPGYVHGRVALIGDAAHAMLPHQGAGAGQGLEDAYFLA 331 (414)
T ss_pred CHHHHHHHhcCCCHHHHHHHHhCCCC--Cceeeeeccc----ccceeeCcEEEEEcccCCCCCCcCcchHhHHHHHHHHH
Confidence 45778888899999999988876432 2233333333 34799999999999999999999999999999999999
Q ss_pred HHHHHHHhccCCCCCCchhhhhHHHHHHHHHHHHhhhhhHHHHHHHHHHhhhhhccCchHHHH
Q 021278 225 RCINEALKTKQGVGEEDEEEFNKRVEMGLKRYAKERRWRCFELISIAYLVGSIQQSDGKILNF 287 (315)
Q Consensus 225 ~~l~~~~~~~~~~~~~~~~~s~~~~~~~l~~Y~~~r~~~~~~~~~~s~~~~~~~~~~~~~~~~ 287 (315)
++|.....+ ..+++.+|+.|+++|++++..+++.|+.+..+++..++....
T Consensus 332 ~~L~~~~~~------------~~~~~~al~~Ye~~R~~r~~~~~~~s~~~~~~~~~~~~~~~~ 382 (414)
T TIGR03219 332 RLLGDTELE------------AGDLPALLEAYDDVRRPRACRVQRTSREAGELYELRDPAVGA 382 (414)
T ss_pred HHHHhhccC------------cchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcCCChhccC
Confidence 999875432 247899999999999999999999999999998877754443
No 4
>PRK07588 hypothetical protein; Provisional
Probab=100.00 E-value=1e-35 Score=270.56 Aligned_cols=269 Identities=16% Similarity=0.162 Sum_probs=201.2
Q ss_pred ccceeeeHHHHHHHHHhhCCC-CcEEecceEEEEEeeCCeeEEEecCCCEEeecEEEecCCCchhhhhhhC-CCC--Ccc
Q 021278 6 HEMRCVRRKLLLETLAKELPS-GTIRYSSQVVSIEESGHFKLLHLADGTILKTKVLIGCDGVNSIVAKWLG-FKN--PAF 81 (315)
Q Consensus 6 ~~~~~i~R~~L~~~L~~~~~~-~~i~~~~~v~~~~~~~~~~~v~~~~g~~~~ad~vVgADG~~S~vr~~l~-~~~--~~~ 81 (315)
..++.++|..|.+.|++++++ ++|+++++|++++.++++++|++++|+++++|+||||||++|.||+.+. ... ..+
T Consensus 95 ~~~~~i~r~~l~~~L~~~~~~~v~i~~~~~v~~i~~~~~~v~v~~~~g~~~~~d~vIgADG~~S~vR~~~~~~~~~~~~~ 174 (391)
T PRK07588 95 DDFTSLPRGDLAAAIYTAIDGQVETIFDDSIATIDEHRDGVRVTFERGTPRDFDLVIGADGLHSHVRRLVFGPERDFEHY 174 (391)
T ss_pred CceEEEEHHHHHHHHHHhhhcCeEEEeCCEEeEEEECCCeEEEEECCCCEEEeCEEEECCCCCccchhhccCCccceEEE
Confidence 356789999999999998765 8999999999999988899999999999999999999999999999863 222 223
Q ss_pred ccceEEEeeeecCCCCCCCCceEEEecCCeEEEEEecCCCeEEEEEEeeCCCCCcccccChHHHHHHHHHHhcCCChHHH
Q 021278 82 VGRSAIRGYSDFKGSHGFEPNFLQFFGKGLRSGFIPCDDQTIYWFFTWTSSSQDKELEDHSAELKQFVLGKLHDLPAQVK 161 (315)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (315)
.+...+......... .....+..+.+++.++.++|++++...+.+.+..+.. ....+.+...+.+++.+.++.+...
T Consensus 175 ~g~~~~~~~~~~~~~-~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~ 251 (391)
T PRK07588 175 LGCKVAACVVDGYRP-RDERTYVLYNEVGRQVARVALRGDRTLFLFIFRAEHD--NPPLTPAEEKQLLRDQFGDVGWETP 251 (391)
T ss_pred cCcEEEEEEcCCCCC-CCCceEEEEeCCCCEEEEEecCCCCeEEEEEEEcCCc--cccCCHHHHHHHHHHHhccCCccHH
Confidence 333333322211111 1123355566777788899998887655555443321 1233566778888888888776555
Q ss_pred HHHHcCCC-cceeeccccccCcccccccCcCCCcEEEeccCCCCCCCCCccchhhhhhHHHHHHHHHHHHHhccCCCCCC
Q 021278 162 AVIEKTPL-DSIISSRLQYRQPQEVLWGNISRGSVCVAGDALHPMTPDIGQGGCAALEDGIVLARCINEALKTKQGVGEE 240 (315)
Q Consensus 162 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~v~LiGDAAh~~~P~~G~G~~~al~da~~La~~l~~~~~~~~~~~~~ 240 (315)
.++...+. ..+...++ ....+++|..|||+|||||||.|+|+.|||+|+||+||..|++.|....
T Consensus 252 ~~~~~~~~~~~~~~~~~-----~~~~~~~w~~grv~LiGDAAH~~~P~~GqG~n~aieDa~~La~~L~~~~--------- 317 (391)
T PRK07588 252 DILAALDDVEDLYFDVV-----SQIRMDRWSRGRVALVGDAAACPSLLGGEGSGLAITEAYVLAGELARAG--------- 317 (391)
T ss_pred HHHHhhhcccchheeee-----eeeccCccccCCEEEEEccccCCCCccCCcHHHHHHHHHHHHHHHHhcc---------
Confidence 55544321 11111111 1112357899999999999999999999999999999999999997521
Q ss_pred chhhhhHHHHHHHHHHHHhhhhhHHHHHHHHHHhhhhhccCchHHHHHHHHHHHHHH
Q 021278 241 DEEEFNKRVEMGLKRYAKERRWRCFELISIAYLVGSIQQSDGKILNFLRDKILASFL 297 (315)
Q Consensus 241 ~~~~s~~~~~~~l~~Y~~~r~~~~~~~~~~s~~~~~~~~~~~~~~~~~r~~~l~~~~ 297 (315)
...+.+|+.|++.|++++..++..++.+..+++..+++...+|+..+..+-
T Consensus 318 ------~~~~~al~~Y~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~ 368 (391)
T PRK07588 318 ------GDHRRAFDAYEKRLRPFIAGKQAAAAKFLSVFAPKTRFGLYVRNIAMKIMN 368 (391)
T ss_pred ------CCHHHHHHHHHHHHHHHHHHHHhhcccccccccCCCHHHHHHHHHHHHHhc
Confidence 146789999999999999999999999999999999999999999998655
No 5
>COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]
Probab=100.00 E-value=1.2e-35 Score=269.22 Aligned_cols=268 Identities=24% Similarity=0.300 Sum_probs=201.5
Q ss_pred CccceeeeHHHHHHHHHhhC---CCCcEEecceEEEEEeeCCeeEEEec-CCCEEeecEEEecCCCchhhhhhhCCCCCc
Q 021278 5 EHEMRCVRRKLLLETLAKEL---PSGTIRYSSQVVSIEESGHFKLLHLA-DGTILKTKVLIGCDGVNSIVAKWLGFKNPA 80 (315)
Q Consensus 5 ~~~~~~i~R~~L~~~L~~~~---~~~~i~~~~~v~~~~~~~~~~~v~~~-~g~~~~ad~vVgADG~~S~vr~~l~~~~~~ 80 (315)
+...+++.|..|.+.|.+++ ++++++++++|+.++.+++.++|++. +|++++|||||||||.+|.||+.+++....
T Consensus 95 ~~~~~~~~~~~l~~~L~~~~~~~~~v~~~~~~~v~~~~~~~~~v~v~l~~dG~~~~a~llVgADG~~S~vR~~~~~~~~~ 174 (387)
T COG0654 95 GALGYVVPRSDLLNALLEAARALPNVTLRFGAEVEAVEQDGDGVTVTLSFDGETLDADLLVGADGANSAVRRAAGIAEFS 174 (387)
T ss_pred CcceEEeEhHHHHHHHHHHHhhCCCcEEEcCceEEEEEEcCCceEEEEcCCCcEEecCEEEECCCCchHHHHhcCCCCcc
Confidence 55678999999999999987 34899999999999999999889998 999999999999999999999999943222
Q ss_pred --cccceEEEeeeecCCCCCCCCceEEEecCCeEEEEEecCCCeEEEEEEeeCCCCCcccccChHHHHHHHHHHhcCCCh
Q 021278 81 --FVGRSAIRGYSDFKGSHGFEPNFLQFFGKGLRSGFIPCDDQTIYWFFTWTSSSQDKELEDHSAELKQFVLGKLHDLPA 158 (315)
Q Consensus 81 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (315)
.+....+.+.+..+ .+.......++.+.+.+.++|.+++...................+.+.+.+.+.+.+....+
T Consensus 175 ~~~y~~~~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 252 (387)
T COG0654 175 GRDYGQTALVANVEPE--EPHEGRAGERFTHAGPFALLPLPDNRSSVVWSLPPGPAEDLQGLSDEEFLRELQRRLGERDP 252 (387)
T ss_pred CCCCCceEEEEEeecC--CCCCCeEEEEecCCCceEEEecCCCceeEEEECChhhHHHHhcCCHHHHHHHHHHhcCcccc
Confidence 34555555555554 22234444566666777799999644322222222222223445566666666666543322
Q ss_pred HHHHHHHcCCCcceeeccccccCcccccccCcCCCcEEEeccCCCCCCCCCccchhhhhhHHHHHHHHHHHHHhccCCCC
Q 021278 159 QVKAVIEKTPLDSIISSRLQYRQPQEVLWGNISRGSVCVAGDALHPMTPDIGQGGCAALEDGIVLARCINEALKTKQGVG 238 (315)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~LiGDAAh~~~P~~G~G~~~al~da~~La~~l~~~~~~~~~~~ 238 (315)
.-..........+++.. ..+++|..+|++|||||||+++|++|||+|+||+||..|+++|..+....
T Consensus 253 ----~~~~~~~~~~~~~pl~~-----~~a~~~~~~Rv~LiGDAAH~~~P~~gQG~nlgl~Da~~La~~L~~~~~~~---- 319 (387)
T COG0654 253 ----LGRVTLVSSRSAFPLSL-----RVAERYRRGRVVLIGDAAHAMHPLAGQGANLALEDAAALAEALAAAPRPG---- 319 (387)
T ss_pred ----cceEEEccccccccccc-----hhhhheecCcEEEEeeccccCCCccccchhhhhhhHHHHHHHHHHHhhcC----
Confidence 11111112333444433 33457889999999999999999999999999999999999999987731
Q ss_pred CCchhhhhHHHHHHHHHHHHhhhhhHHHHHHHHHHhhhhhccCchHHHHHHHHHHHHH
Q 021278 239 EEDEEEFNKRVEMGLKRYAKERRWRCFELISIAYLVGSIQQSDGKILNFLRDKILASF 296 (315)
Q Consensus 239 ~~~~~~s~~~~~~~l~~Y~~~r~~~~~~~~~~s~~~~~~~~~~~~~~~~~r~~~l~~~ 296 (315)
.+ +.+|+.|+++|++++...+..+..+...+....+....+|+..++.+
T Consensus 320 --------~~-~~~L~~Y~~~R~~~~~~~~~~s~~~~~~~~~~~~~~~~~r~~~l~~~ 368 (387)
T COG0654 320 --------AD-AAALAAYEARRRPRAEAIQKLSRALGRLFSADGPFARFLRNLGLRLL 368 (387)
T ss_pred --------cc-HHHHHHHHHhhhhHHHHHHHHHHHHhhhhccCCcHHHHHHHHHHHhh
Confidence 12 89999999999999999999999999999999999999999999875
No 6
>PLN02927 antheraxanthin epoxidase/zeaxanthin epoxidase
Probab=100.00 E-value=1e-34 Score=272.67 Aligned_cols=259 Identities=26% Similarity=0.392 Sum_probs=204.8
Q ss_pred ceeeeHHHHHHHHHhhCCCCcEEecceEEEEEeeCCeeEEEecCCCEEeecEEEecCCCchhhhhhh-CCCCCccccceE
Q 021278 8 MRCVRRKLLLETLAKELPSGTIRYSSQVVSIEESGHFKLLHLADGTILKTKVLIGCDGVNSIVAKWL-GFKNPAFVGRSA 86 (315)
Q Consensus 8 ~~~i~R~~L~~~L~~~~~~~~i~~~~~v~~~~~~~~~~~v~~~~g~~~~ad~vVgADG~~S~vr~~l-~~~~~~~~~~~~ 86 (315)
.+.|+|..|.+.|.++++...++++++|++++.++++++|++.+|+++++|+||||||++|.+|+.+ +..++.+.++.+
T Consensus 188 ~~~I~R~~L~~~L~~alg~~~i~~g~~V~~I~~~~d~VtV~~~dG~ti~aDlVVGADG~~S~vR~~l~g~~~~~~sG~~~ 267 (668)
T PLN02927 188 TRVISRMTLQQILARAVGEDVIRNESNVVDFEDSGDKVTVVLENGQRYEGDLLVGADGIWSKVRNNLFGRSEATYSGYTC 267 (668)
T ss_pred EEEEeHHHHHHHHHhhCCCCEEEcCCEEEEEEEeCCEEEEEECCCCEEEcCEEEECCCCCcHHHHHhcCCCCCcccceEE
Confidence 4689999999999998876668999999999998899999999999999999999999999999987 666777888999
Q ss_pred EEeeeecCCCCCCCCceEEEecCCeEEEEEecCCCeEEEEEEeeCCCCCcccccChHHHHHHHHHHhcCCChHHHHHHHc
Q 021278 87 IRGYSDFKGSHGFEPNFLQFFGKGLRSGFIPCDDQTIYWFFTWTSSSQDKELEDHSAELKQFVLGKLHDLPAQVKAVIEK 166 (315)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (315)
+++.++.............+.+.+.++..+|..++.+.|+..+..+.. .....+..++.+++.+.+|.+.+.+++..
T Consensus 268 ~rgi~~~~p~~~~~~~~~~~~G~~~~~v~~~v~~g~~~~~~f~~~p~~---~~~~~~~~~e~L~~~f~~w~~~v~elI~~ 344 (668)
T PLN02927 268 YTGIADFIPADIESVGYRVFLGHKQYFVSSDVGGGKMQWYAFHEEPAG---GADAPNGMKKRLFEIFDGWCDNVLDLLHA 344 (668)
T ss_pred EEEEcCCCcccccccceEEEEcCCeEEEEEcCCCCeEEEEEEEECCcc---ccccchhHHHHHHHHhccCCHHHHHHHHh
Confidence 988877643221122345667888888888888887777655433221 11234567788999999999999998887
Q ss_pred CCCcceeeccccccCcccccccCcCCCcEEEeccCCCCCCCCCccchhhhhhHHHHHHHHHHHHHhccCCCCCCchhhhh
Q 021278 167 TPLDSIISSRLQYRQPQEVLWGNISRGSVCVAGDALHPMTPDIGQGGCAALEDGIVLARCINEALKTKQGVGEEDEEEFN 246 (315)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~LiGDAAh~~~P~~G~G~~~al~da~~La~~l~~~~~~~~~~~~~~~~~s~ 246 (315)
.+...+..+.++...+.. +|..|||+|+|||||+|+|+.|||+|+||+||..|+.+|..++.... ...+.
T Consensus 345 t~~~~i~~~~iyd~~p~~----~W~~grVvLiGDAAH~~~P~~GqG~n~AieDa~~La~~L~~~~~~~~------~~~~~ 414 (668)
T PLN02927 345 TEEDAILRRDIYDRSPGF----TWGKGRVTLLGDSIHAMQPNMGQGGCMAIEDSFQLALELDEAWKQSV------ETNTP 414 (668)
T ss_pred CccccceeeeEEeccCCC----ccccCcEEEEcCccCCCCCccccchHHHHHHHHHHHHHHHHhhcccc------ccCCc
Confidence 654445556666555543 78999999999999999999999999999999999999988764310 00112
Q ss_pred HHHHHHHHHHHHhhhhhHHHHHHHHHHhhhhhc
Q 021278 247 KRVEMGLKRYAKERRWRCFELISIAYLVGSIQQ 279 (315)
Q Consensus 247 ~~~~~~l~~Y~~~r~~~~~~~~~~s~~~~~~~~ 279 (315)
..++++|+.|+++|++++..++..++....++.
T Consensus 415 ~~~~~aL~~Ye~~R~~rv~~i~~~ar~a~~~~~ 447 (668)
T PLN02927 415 VDVVSSLKRYEESRRLRVAIIHAMARMAAIMAS 447 (668)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 357899999999999999999999887777764
No 7
>PRK08013 oxidoreductase; Provisional
Probab=100.00 E-value=5.3e-35 Score=266.34 Aligned_cols=268 Identities=15% Similarity=0.174 Sum_probs=187.3
Q ss_pred ceeeeHHHHHHHHHhhC---CCCcEEecceEEEEEeeCCeeEEEecCCCEEeecEEEecCCCchhhhhhhCCCCCcc-cc
Q 021278 8 MRCVRRKLLLETLAKEL---PSGTIRYSSQVVSIEESGHFKLLHLADGTILKTKVLIGCDGVNSIVAKWLGFKNPAF-VG 83 (315)
Q Consensus 8 ~~~i~R~~L~~~L~~~~---~~~~i~~~~~v~~~~~~~~~~~v~~~~g~~~~ad~vVgADG~~S~vr~~l~~~~~~~-~~ 83 (315)
.+.++|..|++.|.+++ ++++++++++|+++++++++++|++.+|++++||+||||||.+|.||+.++++.... +.
T Consensus 105 ~~~i~r~~l~~~L~~~~~~~~~v~i~~~~~v~~i~~~~~~v~v~~~~g~~i~a~lvVgADG~~S~vR~~~~~~~~~~~~~ 184 (400)
T PRK08013 105 GHIIENSVIHYALWQKAQQSSDITLLAPAELQQVAWGENEAFLTLKDGSMLTARLVVGADGANSWLRNKADIPLTFWDYQ 184 (400)
T ss_pred EEEEEhHHHHHHHHHHHhcCCCcEEEcCCeeEEEEecCCeEEEEEcCCCEEEeeEEEEeCCCCcHHHHHcCCCccccccC
Confidence 46899999999999876 358999999999999988899999999999999999999999999999998874432 34
Q ss_pred ceEEEeeeecCCCCCCCCceEEEecCCeEEEEEecCCCeE-EEEEEeeCCCCCcccccChHHHHHHHHHHhcCCChHHHH
Q 021278 84 RSAIRGYSDFKGSHGFEPNFLQFFGKGLRSGFIPCDDQTI-YWFFTWTSSSQDKELEDHSAELKQFVLGKLHDLPAQVKA 162 (315)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (315)
..++++.+....+.. ......|.++ +.+.++|..++.. .++.....+..........+++.+.+...+. +.+..
T Consensus 185 ~~~~~~~v~~~~~~~-~~~~~~~~~~-g~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~---~~l~~ 259 (400)
T PRK08013 185 HHALVATIRTEEPHD-AVARQVFHGD-GILAFLPLSDPHLCSIVWSLSPEEAQRMQQAPEEEFNRALAIAFD---NRLGL 259 (400)
T ss_pred cEEEEEEEeccCCCC-CEEEEEEcCC-CCEEEEECCCCCeEEEEEEcCHHHHHHHHcCCHHHHHHHHHHHHh---HhhCc
Confidence 555555554433221 1123344444 4666889976542 2332221111001112334444444443221 11110
Q ss_pred HHHcCCCcceeeccccccCcccccccCcCCCcEEEeccCCCCCCCCCccchhhhhhHHHHHHHHHHHHHhccCCCCCCch
Q 021278 163 VIEKTPLDSIISSRLQYRQPQEVLWGNISRGSVCVAGDALHPMTPDIGQGGCAALEDGIVLARCINEALKTKQGVGEEDE 242 (315)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~LiGDAAh~~~P~~G~G~~~al~da~~La~~l~~~~~~~~~~~~~~~ 242 (315)
. ... .....+++.. ..+++|++|||+|||||||.++|+.|||+|+||+||..|+++|...+... ..
T Consensus 260 ~-~~~--~~~~~~~l~~-----~~~~~~~~grv~LiGDAAH~~~P~~GQG~n~gi~Da~~La~~L~~~~~~~----~~-- 325 (400)
T PRK08013 260 C-ELE--SERQVFPLTG-----RYARQFAAHRLALVGDAAHTIHPLAGQGVNLGFMDAAELIAELRRLHRQG----KD-- 325 (400)
T ss_pred e-Eec--CCccEEecce-----eecccccCCcEEEEechhhcCCccccCchhhhHHHHHHHHHHHHHHHhcC----CC--
Confidence 0 000 0111233222 23568999999999999999999999999999999999999999876431 00
Q ss_pred hhhhHHHHHHHHHHHHhhhhhHHHHHHHHHHhhhhhccCchHHHHHHHHHHHHHHH
Q 021278 243 EEFNKRVEMGLKRYAKERRWRCFELISIAYLVGSIQQSDGKILNFLRDKILASFLV 298 (315)
Q Consensus 243 ~~s~~~~~~~l~~Y~~~r~~~~~~~~~~s~~~~~~~~~~~~~~~~~r~~~l~~~~~ 298 (315)
.....+|+.|+++|++++..++..++.+..++.+.++....+|++.++.+..
T Consensus 326 ----~~~~~~L~~Y~~~R~~~~~~~~~~~~~~~~l~~~~~~~~~~~R~~~l~~~~~ 377 (400)
T PRK08013 326 ----IGQHLYLRRYERSRKHSAALMLAGMQGFRDLFAGNNPAKKLLRDIGLKLADT 377 (400)
T ss_pred ----cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHhh
Confidence 0123579999999999999999999999999999999999999999886533
No 8
>PRK05868 hypothetical protein; Validated
Probab=100.00 E-value=1.5e-34 Score=260.48 Aligned_cols=263 Identities=15% Similarity=0.097 Sum_probs=187.9
Q ss_pred ceeeeHHHHHHHHHhhC-CCCcEEecceEEEEEeeCCeeEEEecCCCEEeecEEEecCCCchhhhhhhCCCCCc-cccce
Q 021278 8 MRCVRRKLLLETLAKEL-PSGTIRYSSQVVSIEESGHFKLLHLADGTILKTKVLIGCDGVNSIVAKWLGFKNPA-FVGRS 85 (315)
Q Consensus 8 ~~~i~R~~L~~~L~~~~-~~~~i~~~~~v~~~~~~~~~~~v~~~~g~~~~ad~vVgADG~~S~vr~~l~~~~~~-~~~~~ 85 (315)
.+.+.|..|.+.|.+++ ++++++++++|+++++++++++|++++|++++||+||||||.+|.||+.+..+... ....-
T Consensus 99 ~~~i~R~~L~~~l~~~~~~~v~i~~~~~v~~i~~~~~~v~v~~~dg~~~~adlvIgADG~~S~vR~~~~~~~~~~~~~~g 178 (372)
T PRK05868 99 DIELLRDDLVELLYGATQPSVEYLFDDSISTLQDDGDSVRVTFERAAAREFDLVIGADGLHSNVRRLVFGPEEQFVKRLG 178 (372)
T ss_pred eEEEEHHHHHHHHHHhccCCcEEEeCCEEEEEEecCCeEEEEECCCCeEEeCEEEECCCCCchHHHHhcCCcccceeecc
Confidence 46899999999998876 45899999999999988888999999999999999999999999999998433222 22222
Q ss_pred EEEeeeecCCCCCCCCceEEEecCCeEEEEEecCCCeE-EEEEEeeCCCCCcccccChHHHHHHHHHHhc--CCC-hHHH
Q 021278 86 AIRGYSDFKGSHGFEPNFLQFFGKGLRSGFIPCDDQTI-YWFFTWTSSSQDKELEDHSAELKQFVLGKLH--DLP-AQVK 161 (315)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~-~~~~ 161 (315)
.+.+++..+.....+....++++.+.+++++|..++.. ..++.+........ ....+..++.+.+.|. +|. +.+.
T Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~f~~~~w~~~~l~ 257 (372)
T PRK05868 179 THAAIFTVPNFLELDYWQTWHYGDSTMAGVYSARNNTEARAALAFMDTELRID-YRDTEAQFAELQRRMAEDGWVRAQLL 257 (372)
T ss_pred eEEEEEEcCCCCCCCcceEEEecCCcEEEEEecCCCCceEEEEEEecCCcccc-cCChHHHHHHHHHHHhhCCCchHHHH
Confidence 22333333332222222233468888888999987543 34454443221111 1224456778888887 454 3333
Q ss_pred HHHHcCCCcceeeccccccCcccccccCcCCCcEEEeccCCCCCCCCCccchhhhhhHHHHHHHHHHHHHhccCCCCCCc
Q 021278 162 AVIEKTPLDSIISSRLQYRQPQEVLWGNISRGSVCVAGDALHPMTPDIGQGGCAALEDGIVLARCINEALKTKQGVGEED 241 (315)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~LiGDAAh~~~P~~G~G~~~al~da~~La~~l~~~~~~~~~~~~~~ 241 (315)
+.+...+ .+....+. ...+++|++|||+|||||||+++|+.|||+|+||+||..|+++|...
T Consensus 258 ~~~~~~~--~~~~~~~~-----~~~~~~w~~grv~LvGDAAH~~~P~~GqGa~~AleDa~~La~~L~~~----------- 319 (372)
T PRK05868 258 HYMRSAP--DFYFDEMS-----QILMDRWSRGRVALVGDAGYCCSPLSGQGTSVALLGAYILAGELKAA----------- 319 (372)
T ss_pred hhcccCC--ceeeccce-----EEecCCCCCCCeeeeecccccCCCccCccHHHHHHHHHHHHHHHHhc-----------
Confidence 3332221 22111111 12235899999999999999999999999999999999999999662
Q ss_pred hhhhhHHHHHHHHHHHHhhhhhHHHHHHHHHHhhhhhccCchHHHHHHHHHH
Q 021278 242 EEEFNKRVEMGLKRYAKERRWRCFELISIAYLVGSIQQSDGKILNFLRDKIL 293 (315)
Q Consensus 242 ~~~s~~~~~~~l~~Y~~~r~~~~~~~~~~s~~~~~~~~~~~~~~~~~r~~~l 293 (315)
.++.+++|+.|++.+++++.+.+........++...+.+..++|+..+
T Consensus 320 ----~~~~~~al~~ye~~~~~~~~~~q~~~~~~~~~~~p~~~~~~~~~~~~~ 367 (372)
T PRK05868 320 ----GDDYQLGFANYHAEFHGFVERNQWLVSDNIPGGAPIPQEEFERIVHSI 367 (372)
T ss_pred ----CCCHHHHHHHHHHHHhHHHHHhhhhhhccCCcccCCCHHHHHHhhccc
Confidence 125889999999999999999999999999999999988888776554
No 9
>PRK08850 2-octaprenyl-6-methoxyphenol hydroxylase; Validated
Probab=100.00 E-value=2.6e-34 Score=262.39 Aligned_cols=266 Identities=18% Similarity=0.215 Sum_probs=194.6
Q ss_pred ceeeeHHHHHHHHHhhC---CCCcEEecceEEEEEeeCCeeEEEecCCCEEeecEEEecCCCchhhhhhhCCCCCc-ccc
Q 021278 8 MRCVRRKLLLETLAKEL---PSGTIRYSSQVVSIEESGHFKLLHLADGTILKTKVLIGCDGVNSIVAKWLGFKNPA-FVG 83 (315)
Q Consensus 8 ~~~i~R~~L~~~L~~~~---~~~~i~~~~~v~~~~~~~~~~~v~~~~g~~~~ad~vVgADG~~S~vr~~l~~~~~~-~~~ 83 (315)
.+.+.|..|.+.|++++ ++++++++++|++++.+++++.|++++|++++||+||||||.+|.+|+.++++... .++
T Consensus 105 g~~~~~~~l~~~L~~~~~~~~~v~v~~~~~v~~i~~~~~~~~v~~~~g~~~~a~lvIgADG~~S~vR~~~~~~~~~~~~~ 184 (405)
T PRK08850 105 GHIVENRVIQLALLEQVQKQDNVTLLMPARCQSIAVGESEAWLTLDNGQALTAKLVVGADGANSWLRRQMDIPLTHWDYG 184 (405)
T ss_pred EEEEEHHHHHHHHHHHHhcCCCeEEEcCCeeEEEEeeCCeEEEEECCCCEEEeCEEEEeCCCCChhHHHcCCCeeEEeec
Confidence 45788999999999876 45899999999999998888999999999999999999999999999999887433 346
Q ss_pred ceEEEeeeecCCCCCCCCceEEEecCCeEEEEEecCCCeEEEEEEeeCCCCC-c-ccccChHHHHHHHHHHhcCCChHHH
Q 021278 84 RSAIRGYSDFKGSHGFEPNFLQFFGKGLRSGFIPCDDQTIYWFFTWTSSSQD-K-ELEDHSAELKQFVLGKLHDLPAQVK 161 (315)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (315)
..++.+.+..+..+ ......++++++.+.++|+.++..+ .+.|..+... . ....+.+++.+.+.+.+... +.
T Consensus 185 ~~~~~~~v~~~~~~--~~~~~~~~~~~g~~~~lp~~~~~~~-~~~w~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---~~ 258 (405)
T PRK08850 185 HSALVANVRTVDPH--NSVARQIFTPQGPLAFLPMSEPNMS-SIVWSTEPLRAEALLAMSDEQFNKALTAEFDNR---LG 258 (405)
T ss_pred cEEEEEEEEccCCC--CCEEEEEEcCCCceEEEECCCCCeE-EEEEECCHHHHHHHHcCCHHHHHHHHHHHHhhh---hC
Confidence 67777777554322 2233455666677779999865432 2233332211 1 12334455666666554321 10
Q ss_pred HHHHcCCCcceeeccccccCcccccccCcCCCcEEEeccCCCCCCCCCccchhhhhhHHHHHHHHHHHHHhccCCCCCCc
Q 021278 162 AVIEKTPLDSIISSRLQYRQPQEVLWGNISRGSVCVAGDALHPMTPDIGQGGCAALEDGIVLARCINEALKTKQGVGEED 241 (315)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~LiGDAAh~~~P~~G~G~~~al~da~~La~~l~~~~~~~~~~~~~~ 241 (315)
. +... .....+|+.. ...++|.++||+|+|||||.++|+.|||+|+||+||..|+++|...+... .
T Consensus 259 ~-~~~~--~~~~~~pl~~-----~~~~~~~~~rv~LiGDAAH~~~P~~GQG~n~ai~Da~~La~~L~~~~~~~----~-- 324 (405)
T PRK08850 259 L-CEVV--GERQAFPLKM-----RYARDFVRERVALVGDAAHTIHPLAGQGVNLGLLDAASLAQEILALWQQG----R-- 324 (405)
T ss_pred c-EEEc--ccccEEecce-----eeccccccCcEEEEEhhhhcCCccccccHHHHHHHHHHHHHHHHHHHhcC----C--
Confidence 0 0000 1112233322 22457999999999999999999999999999999999999998876431 0
Q ss_pred hhhhhHHHHHHHHHHHHhhhhhHHHHHHHHHHhhhhhccCchHHHHHHHHHHHHHH
Q 021278 242 EEEFNKRVEMGLKRYAKERRWRCFELISIAYLVGSIQQSDGKILNFLRDKILASFL 297 (315)
Q Consensus 242 ~~~s~~~~~~~l~~Y~~~r~~~~~~~~~~s~~~~~~~~~~~~~~~~~r~~~l~~~~ 297 (315)
....+.+|+.|+++|++++..++..+..+..+++..++....+|++.+..+.
T Consensus 325 ----~~~~~~~L~~Y~~~R~~~~~~~~~~~~~l~~~~~~~~~~~~~~R~~~l~~~~ 376 (405)
T PRK08850 325 ----DIGLKRNLRGYERWRKAEAAKMIAAMQGFRDLFSGSNPAKKLVRGIGMSLAG 376 (405)
T ss_pred ----CcchHHHHHHHHHHHhHHHHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHHh
Confidence 1134689999999999999999999999999999999999999999997443
No 10
>TIGR01989 COQ6 Ubiquinone biosynthesis mono0xygenase COQ6. This model represents the monooxygenase responsible for the 4-hydroxylateion of the phenol ring in the aerobic biosynthesis of ubiquinone
Probab=100.00 E-value=3.9e-34 Score=263.21 Aligned_cols=280 Identities=19% Similarity=0.194 Sum_probs=197.3
Q ss_pred ceeeeHHHHHHHHHhhC---C--CCcEEecceEEEEEee-------CCeeEEEecCCCEEeecEEEecCCCchhhhhhhC
Q 021278 8 MRCVRRKLLLETLAKEL---P--SGTIRYSSQVVSIEES-------GHFKLLHLADGTILKTKVLIGCDGVNSIVAKWLG 75 (315)
Q Consensus 8 ~~~i~R~~L~~~L~~~~---~--~~~i~~~~~v~~~~~~-------~~~~~v~~~~g~~~~ad~vVgADG~~S~vr~~l~ 75 (315)
.+.++|..|.+.|.+++ + +++++++++|++++.. +++++|++.+|++++||+||||||.+|.||+.+|
T Consensus 111 ~~~i~~~~l~~~L~~~~~~~~~~~v~i~~~~~v~~i~~~~~~~~~~~~~v~v~~~~g~~i~a~llVgADG~~S~vR~~~g 190 (437)
T TIGR01989 111 ACIIENDNIQNSLYNRLQEYNGDNVKILNPARLISVTIPSKYPNDNSNWVHITLSDGQVLYTKLLIGADGSNSNVRKAAN 190 (437)
T ss_pred EEEEEHHHHHHHHHHHHHhCCCCCeEEecCCeeEEEEeccccccCCCCceEEEEcCCCEEEeeEEEEecCCCChhHHHcC
Confidence 56899999999999876 3 4799999999999752 4568999999999999999999999999999998
Q ss_pred CCCCcc-ccceEEEeeeecCCCCCCCCceEEEecCCeEEEEEecCCCeEEEEEEeeCCCCCcccccChHHHHHHHHHHhc
Q 021278 76 FKNPAF-VGRSAIRGYSDFKGSHGFEPNFLQFFGKGLRSGFIPCDDQTIYWFFTWTSSSQDKELEDHSAELKQFVLGKLH 154 (315)
Q Consensus 76 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (315)
+..... +.+.++.+.+...........+..|. +++.+.++|++++..+|+..............+.+++.+.+.+.+.
T Consensus 191 i~~~g~~y~q~~~v~~v~~~~~~~~~~~~~~f~-~~g~~~~lPl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 269 (437)
T TIGR01989 191 IDTTGWNYNQHAVVATLKLEEATENDVAWQRFL-PTGPIALLPLPDNNSTLVWSTSPEEALRLLSLPPEDFVDALNAAFD 269 (437)
T ss_pred CCccceeeccEEEEEEEEcccCCCCCeEEEEEC-CCCCEEEeECCCCCEEEEEeCCHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 875543 34456666665543222223344444 5556778999888755543332211111234556777777766551
Q ss_pred ----CCCh------HHHHHHH--------------------cCCCcceeeccccccCcccccccCcCCCcEEEeccCCCC
Q 021278 155 ----DLPA------QVKAVIE--------------------KTPLDSIISSRLQYRQPQEVLWGNISRGSVCVAGDALHP 204 (315)
Q Consensus 155 ----~~~~------~~~~~~~--------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~LiGDAAh~ 204 (315)
.++. .+.++.. .........+++.. ..+++|..+||+|+|||||.
T Consensus 270 ~~~~~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~rv~l~GDAAH~ 344 (437)
T TIGR01989 270 LGYSDHPYSYLLDYAMEKLNEDIGFRTEGSKSCFQVPPRVIGVVDKSRAAFPLGL-----GHADEYVTKRVALVGDAAHR 344 (437)
T ss_pred ccccccccccccccccccccccccccccccccccccCchhheeecccceeEEecc-----cchhhccCCCEEEEchhhcC
Confidence 1100 0000000 00000111222221 23457899999999999999
Q ss_pred CCCCCccchhhhhhHHHHHHHHHHHHHhccCCCCCCchhhhhHHHHHHHHHHHHhhhhhHHHHHHHHHHhhhhhccCchH
Q 021278 205 MTPDIGQGGCAALEDGIVLARCINEALKTKQGVGEEDEEEFNKRVEMGLKRYAKERRWRCFELISIAYLVGSIQQSDGKI 284 (315)
Q Consensus 205 ~~P~~G~G~~~al~da~~La~~l~~~~~~~~~~~~~~~~~s~~~~~~~l~~Y~~~r~~~~~~~~~~s~~~~~~~~~~~~~ 284 (315)
++|+.|||+|+||+||..|+++|..++... . ......+|+.|+++|+++++.++..++.+..+|...++.
T Consensus 345 ~~P~~GqG~n~~l~Da~~La~~L~~~~~~~----~------~~~~~~~L~~Y~~~R~~~~~~v~~~t~~l~~l~~~~~~~ 414 (437)
T TIGR01989 345 VHPLAGQGVNLGFGDVASLVKALAEAVSVG----A------DIGSISSLKPYERERYAKNVVLLGLVDKLHKLYATDFPP 414 (437)
T ss_pred CCCChhhhHHHHHHHHHHHHHHHHHHHhcC----C------ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccH
Confidence 999999999999999999999999876541 0 012357899999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhhcc
Q 021278 285 LNFLRDKILASFLVGLLLK 303 (315)
Q Consensus 285 ~~~~r~~~l~~~~~~~~~~ 303 (315)
...+|++.|..+.....+|
T Consensus 415 ~~~~R~~~l~~~~~~~~~k 433 (437)
T TIGR01989 415 VVALRTFGLNLTNYIGPLK 433 (437)
T ss_pred HHHHHHHHHHHhhhCHHhH
Confidence 9999999998666544443
No 11
>PRK06617 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=100.00 E-value=2.9e-34 Score=259.27 Aligned_cols=257 Identities=18% Similarity=0.172 Sum_probs=181.3
Q ss_pred cceeeeHHHHHHHHHhhCC---CCcEEecceEEEEEeeCCeeEEEecCCCEEeecEEEecCCCchhhhhhhCCCCCcccc
Q 021278 7 EMRCVRRKLLLETLAKELP---SGTIRYSSQVVSIEESGHFKLLHLADGTILKTKVLIGCDGVNSIVAKWLGFKNPAFVG 83 (315)
Q Consensus 7 ~~~~i~R~~L~~~L~~~~~---~~~i~~~~~v~~~~~~~~~~~v~~~~g~~~~ad~vVgADG~~S~vr~~l~~~~~~~~~ 83 (315)
..+.++|..|++.|++++. +++++++++++++..++++++|.+.++ +++||+||||||.+|.||+.++........
T Consensus 97 ~g~~v~r~~L~~~L~~~~~~~~~v~~~~~~~v~~i~~~~~~v~v~~~~~-~~~adlvIgADG~~S~vR~~l~~~~~~~~y 175 (374)
T PRK06617 97 LGYVVKNSDFKKILLSKITNNPLITLIDNNQYQEVISHNDYSIIKFDDK-QIKCNLLIICDGANSKVRSHYFANEIEKPY 175 (374)
T ss_pred cEEEEEHHHHHHHHHHHHhcCCCcEEECCCeEEEEEEcCCeEEEEEcCC-EEeeCEEEEeCCCCchhHHhcCCCcccccC
Confidence 3588999999999999863 378999999999999888899999776 999999999999999999999766432222
Q ss_pred ceEEEeeeecCCCCCCCCceEEEecCCeEEEEEecCCCeEEEEEEeeCCCCC--cccccChHHHHHHHHHHhcCCChHHH
Q 021278 84 RSAIRGYSDFKGSHGFEPNFLQFFGKGLRSGFIPCDDQTIYWFFTWTSSSQD--KELEDHSAELKQFVLGKLHDLPAQVK 161 (315)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (315)
+.++.+.+....++. ...+..|... +.+.++|++++... .+.|..+... .......+++.+.+...+. +.+.
T Consensus 176 ~~~~~~~v~~~~~~~-~~~~~~~~~~-g~~~~lPl~~~~~~-~~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~ 249 (374)
T PRK06617 176 QTALTFNIKHEKPHE-NCAMEHFLPL-GPFALLPLKDQYAS-SVIWSTSSDQAALIVNLPVEEVRFLTQRNAG---NSLG 249 (374)
T ss_pred CeEEEEEEeccCCCC-CEEEEEecCC-CCEEEeECCCCCeE-EEEEeCCHHHHHHHHcCCHHHHHHHHHHhhc---hhcC
Confidence 556666655433221 1223344344 45778999887522 2223222111 1112223334333322221 1111
Q ss_pred HHHHcCCCcceeeccccccCcccccccCcCCCcEEEeccCCCCCCCCCccchhhhhhHHHHHHHHHHHHHhccCCCCCCc
Q 021278 162 AVIEKTPLDSIISSRLQYRQPQEVLWGNISRGSVCVAGDALHPMTPDIGQGGCAALEDGIVLARCINEALKTKQGVGEED 241 (315)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~LiGDAAh~~~P~~G~G~~~al~da~~La~~l~~~~~~~~~~~~~~ 241 (315)
.+ . .......+++... .+++|+++||+|||||||.++|+.|||+|+||+||..|+++|..
T Consensus 250 ~i-~--~~~~~~~~~l~~~-----~~~~~~~grv~LiGDAAH~~~P~~GQG~n~gl~Da~~La~~L~~------------ 309 (374)
T PRK06617 250 KI-T--IDSEISSFPLKAR-----IANRYFHNRIVLIADTAHTVHPLAGQGLNQGIKDIEILSMIVSN------------ 309 (374)
T ss_pred ce-e--eccceeEEEeeee-----eccceecCCEEEEEcccccCCCCccccHHHHHHHHHHHHHHHcC------------
Confidence 11 0 0112333444333 23579999999999999999999999999999999999998832
Q ss_pred hhhhhHHHHHHHHHHHHhhhhhHHHHHHHHHHhhhhhccCchHHHHHHHHHHHHHHH
Q 021278 242 EEEFNKRVEMGLKRYAKERRWRCFELISIAYLVGSIQQSDGKILNFLRDKILASFLV 298 (315)
Q Consensus 242 ~~~s~~~~~~~l~~Y~~~r~~~~~~~~~~s~~~~~~~~~~~~~~~~~r~~~l~~~~~ 298 (315)
..+|+.|+++|++++..++..++.+..+|++..++...+|++.|..+-.
T Consensus 310 --------~~~L~~Ye~~R~~~~~~~~~~t~~l~~~f~~~~~~~~~~R~~~l~~~~~ 358 (374)
T PRK06617 310 --------NGTLQEYQKLRQEDNFIMYKLTDELNNIFSNYSKNLRCLRQIGFKVINN 358 (374)
T ss_pred --------cchHHHHHHHHhHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHhc
Confidence 1489999999999999999999999999999999999999999975443
No 12
>PRK08163 salicylate hydroxylase; Provisional
Probab=100.00 E-value=2.6e-33 Score=255.34 Aligned_cols=267 Identities=24% Similarity=0.310 Sum_probs=200.2
Q ss_pred cceeeeHHHHHHHHHhhCC---CCcEEecceEEEEEeeCCeeEEEecCCCEEeecEEEecCCCchhhhhhh-CCCCCccc
Q 021278 7 EMRCVRRKLLLETLAKELP---SGTIRYSSQVVSIEESGHFKLLHLADGTILKTKVLIGCDGVNSIVAKWL-GFKNPAFV 82 (315)
Q Consensus 7 ~~~~i~R~~L~~~L~~~~~---~~~i~~~~~v~~~~~~~~~~~v~~~~g~~~~ad~vVgADG~~S~vr~~l-~~~~~~~~ 82 (315)
+...++|..|.+.|.+++. +++++++++|++++.+++++.|.+.+|++++||+||+|||.+|.+|+.+ +. .+.+.
T Consensus 102 ~~~~i~r~~l~~~L~~~~~~~~~v~~~~~~~v~~i~~~~~~v~v~~~~g~~~~ad~vV~AdG~~S~~r~~~~g~-~~~~~ 180 (396)
T PRK08163 102 PYAVIHRADIHLSLLEAVLDHPLVEFRTSTHVVGIEQDGDGVTVFDQQGNRWTGDALIGCDGVKSVVRQSLVGD-APRVT 180 (396)
T ss_pred cEEEEEHHHHHHHHHHHHHhcCCcEEEeCCEEEEEecCCCceEEEEcCCCEEecCEEEECCCcChHHHhhccCC-CCCcc
Confidence 4567999999999999873 4899999999999988888999999999999999999999999999988 44 45667
Q ss_pred cceEEEeeeecCCCCC-C-CCceEEEecCCeEEEEEecCCCeEEEE-EEeeCCCCCcccccChHHHHHHHHHHhcCCChH
Q 021278 83 GRSAIRGYSDFKGSHG-F-EPNFLQFFGKGLRSGFIPCDDQTIYWF-FTWTSSSQDKELEDHSAELKQFVLGKLHDLPAQ 159 (315)
Q Consensus 83 ~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~p~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (315)
+...+++.+....... . ......+.+++.++..+|+.++..+++ +.+..+. ....... ....+.+.+.|.++.+.
T Consensus 181 g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~p~~~g~~~~~~~~~~~~~-~~~~~~~-~~~~~~l~~~~~~~~~~ 258 (396)
T PRK08163 181 GHVVYRAVIDVDDMPEDLRINAPVLWAGPHCHLVHYPLRGGEQYNLVVTFHSRE-QEEWGVK-DGSKEEVLSYFEGIHPR 258 (396)
T ss_pred ccEEEEEEEeHHHCcchhccCccEEEEcCCceEEEEEecCCeEEEEEEEECCCC-CcccccC-CCCHHHHHHHHcCCChH
Confidence 7777777776432211 1 122345567777888999987764333 3332221 1111111 11246677888899988
Q ss_pred HHHHHHcCCCcceeeccccccCcccccccCcCCCcEEEeccCCCCCCCCCccchhhhhhHHHHHHHHHHHHHhccCCCCC
Q 021278 160 VKAVIEKTPLDSIISSRLQYRQPQEVLWGNISRGSVCVAGDALHPMTPDIGQGGCAALEDGIVLARCINEALKTKQGVGE 239 (315)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~LiGDAAh~~~P~~G~G~~~al~da~~La~~l~~~~~~~~~~~~ 239 (315)
+..++.... .+..+.+....+ +++|..|||+|||||||+|+|+.|||+|+||+||..|+++|...
T Consensus 259 ~~~~~~~~~--~~~~~~~~~~~~----~~~~~~grv~LiGDAAH~~~P~~GqG~n~ai~Da~~La~~L~~~--------- 323 (396)
T PRK08163 259 PRQMLDKPT--SWKRWATADREP----VAKWSTGRVTLLGDAAHPMTQYMAQGACMALEDAVTLGKALEGC--------- 323 (396)
T ss_pred HHHHHhcCC--ceeEccccCCCc----ccccccCcEEEEecccccCCcchhccHHHHHHHHHHHHHHHHhc---------
Confidence 888876543 222333333333 34789999999999999999999999999999999999999652
Q ss_pred CchhhhhHHHHHHHHHHHHhhhhhHHHHHHHHHHhhhhhccCchHHHHHHHHHHHHHHH
Q 021278 240 EDEEEFNKRVEMGLKRYAKERRWRCFELISIAYLVGSIQQSDGKILNFLRDKILASFLV 298 (315)
Q Consensus 240 ~~~~~s~~~~~~~l~~Y~~~r~~~~~~~~~~s~~~~~~~~~~~~~~~~~r~~~l~~~~~ 298 (315)
..+++.+|+.|+++|++++..++..++.+..+++.+ .....+|+..+.....
T Consensus 324 ------~~~~~~al~~y~~~R~~r~~~~~~~s~~~~~~~~~~-~~~~~~r~~~~~~~~~ 375 (396)
T PRK08163 324 ------DGDAEAAFALYESVRIPRTARVVLSAREMGRIYHAK-GVERQVRNLLWKGRTQ 375 (396)
T ss_pred ------cccHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhCCC-CHHHHHHHHHhhccCh
Confidence 125788999999999999999999999999999876 4678888888865443
No 13
>PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=100.00 E-value=1.1e-33 Score=258.41 Aligned_cols=284 Identities=20% Similarity=0.261 Sum_probs=197.3
Q ss_pred ceeeeHHHHHHHHHhhCC--CCcEEecceEEEEEeeCCeeEEEecCCCEEeecEEEecCCCchhhhhhhCCCCCcc-ccc
Q 021278 8 MRCVRRKLLLETLAKELP--SGTIRYSSQVVSIEESGHFKLLHLADGTILKTKVLIGCDGVNSIVAKWLGFKNPAF-VGR 84 (315)
Q Consensus 8 ~~~i~R~~L~~~L~~~~~--~~~i~~~~~v~~~~~~~~~~~v~~~~g~~~~ad~vVgADG~~S~vr~~l~~~~~~~-~~~ 84 (315)
.+.++|..|.+.|.+++. ++++++++++++++.++++++|++.+|++++||+||||||.+|.||+.+++..+.. +..
T Consensus 106 g~~i~~~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~~v~v~~~~g~~~~a~~vVgAdG~~S~vR~~lg~~~~~~~~~~ 185 (405)
T PRK05714 106 GHIVENRVVQDALLERLHDSDIGLLANARLEQMRRSGDDWLLTLADGRQLRAPLVVAADGANSAVRRLAGCATREWDYLH 185 (405)
T ss_pred EEEEEhHHHHHHHHHHHhcCCCEEEcCCEEEEEEEcCCeEEEEECCCCEEEeCEEEEecCCCchhHHhcCCCcccccCCc
Confidence 467999999999998774 48999999999999988889999999999999999999999999999998764332 223
Q ss_pred eEEEeeeecCCCCCCCCceEEEecCCeEEEEEecCCCe-EEE-EEEeeCCCCC--cccccChHHHHHHHHHHhcCCChHH
Q 021278 85 SAIRGYSDFKGSHGFEPNFLQFFGKGLRSGFIPCDDQT-IYW-FFTWTSSSQD--KELEDHSAELKQFVLGKLHDLPAQV 160 (315)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~-~~~-~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (315)
.++...+..+.... ...+.. +.+++.+.++|++++. ..| .+.|..+... .....+.+++.+.+.+.|.. .+
T Consensus 186 ~~~~~~~~~~~~~~-~~~~~~-~~~~g~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~~ 260 (405)
T PRK05714 186 HAIVTSVRCSEPHR-ATAWQR-FTDDGPLAFLPLERDGDEHWCSIVWSTTPEEAERLMALDDDAFCAALERAFEG---RL 260 (405)
T ss_pred eEEEEEEEcCCCCC-CEEEEE-cCCCCCeEEeeCCCCCCCCeEEEEEECCHHHHHHHHCCCHHHHHHHHHHHHHH---Hh
Confidence 33333333332221 122333 4555677799996432 222 3344333211 11223455666666665432 22
Q ss_pred HHHHHcCCCcceeeccccccCcccccccCcCCCcEEEeccCCCCCCCCCccchhhhhhHHHHHHHHHHHHHhccCCCCCC
Q 021278 161 KAVIEKTPLDSIISSRLQYRQPQEVLWGNISRGSVCVAGDALHPMTPDIGQGGCAALEDGIVLARCINEALKTKQGVGEE 240 (315)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~LiGDAAh~~~P~~G~G~~~al~da~~La~~l~~~~~~~~~~~~~ 240 (315)
.+++... ....+++... .+++|.++||+|||||||+++|+.|||+|+||+||..|+++|..+.... .
T Consensus 261 ~~~~~~~---~~~~~~l~~~-----~~~~~~~~rv~LlGDAAH~~~P~~GQG~n~al~DA~~La~~L~~~~~~g----~- 327 (405)
T PRK05714 261 GEVLSAD---PRLCVPLRQR-----HAKRYVEPGLALIGDAAHTIHPLAGQGVNLGFLDAAVLAEVLLHAAERG----E- 327 (405)
T ss_pred CCceecC---CccEEeccee-----ehhhhccCCEEEEEeccccCCCcccccccHHHHHHHHHHHHHHHHHhcC----C-
Confidence 2222221 2233443332 2458999999999999999999999999999999999999998765431 0
Q ss_pred chhhhhHHHHHHHHHHHHhhhhhHHHHHHHHHHhhhhhccCchHHHHHHHHHHHH-----HHHhhhcccccccCCCCcC
Q 021278 241 DEEEFNKRVEMGLKRYAKERRWRCFELISIAYLVGSIQQSDGKILNFLRDKILAS-----FLVGLLLKKADFDCGNLTS 314 (315)
Q Consensus 241 ~~~~s~~~~~~~l~~Y~~~r~~~~~~~~~~s~~~~~~~~~~~~~~~~~r~~~l~~-----~~~~~~~~~~~~~~~~~~~ 314 (315)
......+|+.|+++|++++..++..++.+.++|+..+++...+|+..++. .+.+.+.+.+-=..|.||+
T Consensus 328 -----~~~~~~~L~~Ye~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~l~~~~~~~~~k~~~~~~~~g~~~~~~~ 401 (405)
T PRK05714 328 -----RLADVRVLSRFERRRMPHNLALMAAMEGFERLFQADPLPLRWLRNTGLKLVDQMPEAKALFVRQALGLSGDLPE 401 (405)
T ss_pred -----CcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHHhhCHHHHHHHHHHHhcCCCCCch
Confidence 01235899999999999999999999999999999999999999999974 3344444433322355653
No 14
>PRK06183 mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Validated
Probab=100.00 E-value=1.6e-33 Score=265.57 Aligned_cols=263 Identities=21% Similarity=0.255 Sum_probs=187.4
Q ss_pred ceeeeHHHHHHHHHhhC---CCCcEEecceEEEEEeeCCeeEEEec--CC--CEEeecEEEecCCCchhhhhhhCCCCCc
Q 021278 8 MRCVRRKLLLETLAKEL---PSGTIRYSSQVVSIEESGHFKLLHLA--DG--TILKTKVLIGCDGVNSIVAKWLGFKNPA 80 (315)
Q Consensus 8 ~~~i~R~~L~~~L~~~~---~~~~i~~~~~v~~~~~~~~~~~v~~~--~g--~~~~ad~vVgADG~~S~vr~~l~~~~~~ 80 (315)
...++|..|++.|.+.+ ++++|+++++|+++++++++++|+++ +| .+++||+||||||.+|.||+.+|+....
T Consensus 107 ~~~~~q~~le~~L~~~~~~~~gv~v~~g~~v~~i~~~~~~v~v~~~~~~G~~~~i~ad~vVgADG~~S~vR~~lg~~~~~ 186 (538)
T PRK06183 107 RNAFHQPLLEAVLRAGLARFPHVRVRFGHEVTALTQDDDGVTVTLTDADGQRETVRARYVVGCDGANSFVRRTLGVPFED 186 (538)
T ss_pred hccCChHHHHHHHHHHHHhCCCcEEEcCCEEEEEEEcCCeEEEEEEcCCCCEEEEEEEEEEecCCCchhHHHHcCCeeeC
Confidence 35789999999999865 56999999999999999999988886 46 4799999999999999999999876443
Q ss_pred cccceE-EEeeeecCCCCCCCCceEEEecCCeEEEEEecCCCeEEEEEEeeCCCCCcccccChHHHHHHHHHHhcCCChH
Q 021278 81 FVGRSA-IRGYSDFKGSHGFEPNFLQFFGKGLRSGFIPCDDQTIYWFFTWTSSSQDKELEDHSAELKQFVLGKLHDLPAQ 159 (315)
Q Consensus 81 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (315)
...... +...+..............+++++..+.++|.+++..+|.+......... ...+++. +.+.+..+...
T Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~r~~~~~~~~~~~~-~~~~~~~----~~~~l~~~~~~ 261 (538)
T PRK06183 187 LTFPERWLVVDVLIANDPLGGPHTYQYCDPARPYTSVRLPHGRRRWEFMLLPGETEE-QLASPEN----VWRLLAPWGPT 261 (538)
T ss_pred CCccceEEEEEEecccCccCCCceEEEECCCCCEEEEEcCCCeEEEEEEeCCCCChh-hcCCHHH----HHHHHHhhCCC
Confidence 322211 11111122111112234456677778889999988877766654332211 1112333 33333333110
Q ss_pred HHHHHHcCCCcceeeccccccCcccccccCcCCCcEEEeccCCCCCCCCCccchhhhhhHHHHHHHHHHHHHhccCCCCC
Q 021278 160 VKAVIEKTPLDSIISSRLQYRQPQEVLWGNISRGSVCVAGDALHPMTPDIGQGGCAALEDGIVLARCINEALKTKQGVGE 239 (315)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~LiGDAAh~~~P~~G~G~~~al~da~~La~~l~~~~~~~~~~~~ 239 (315)
.. .. +......+.+. ...+++|..|||+|+|||||.++|+.|||+|+||+||.+|++.|...+.+.
T Consensus 262 ~~-~~---~~~~~~~~~~~-----~~~a~~~~~gRv~L~GDAAH~~~P~~GQG~n~gi~DA~~La~kLa~~~~g~----- 327 (538)
T PRK06183 262 PD-DA---ELIRHAVYTFH-----ARVADRWRSGRVLLAGDAAHLMPPFAGQGMNSGIRDAANLAWKLAAVLRGR----- 327 (538)
T ss_pred Cc-ce---EEEEEEeeeEc-----cEEhhhhccCCEEEEechhhcCCCccccchhhhHHHHHHHHHHHHHHHcCC-----
Confidence 00 00 00011111111 123468999999999999999999999999999999999999999876652
Q ss_pred CchhhhhHHHHHHHHHHHHhhhhhHHHHHHHHHHhhhhhccCchHHHHHHHHHHHHHH
Q 021278 240 EDEEEFNKRVEMGLKRYAKERRWRCFELISIAYLVGSIQQSDGKILNFLRDKILASFL 297 (315)
Q Consensus 240 ~~~~~s~~~~~~~l~~Y~~~r~~~~~~~~~~s~~~~~~~~~~~~~~~~~r~~~l~~~~ 297 (315)
..+.+|+.|+++|++++..+++.+..+..++...++....+|+..++.+.
T Consensus 328 --------~~~~~L~~Ye~eR~p~~~~~~~~s~~~~~~~~~~~~~~~~~R~~~l~~~~ 377 (538)
T PRK06183 328 --------AGDALLDTYEQERRPHARAMIDLAVRLGRVICPTDRLAAALRDAVLRALN 377 (538)
T ss_pred --------CcHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCHHHHHHHHHHHHhhh
Confidence 45789999999999999999999999999999999999999998887543
No 15
>KOG2614 consensus Kynurenine 3-monooxygenase and related flavoprotein monooxygenases [Energy production and conversion; General function prediction only]
Probab=100.00 E-value=4.9e-34 Score=246.74 Aligned_cols=305 Identities=38% Similarity=0.563 Sum_probs=219.3
Q ss_pred cceeeeHHHHHHHHHhhCCCCcEEecc------eEEEEEeeCCeeEEEecCCCEEeecEEEecCCCchhhhhhhCCCCCc
Q 021278 7 EMRCVRRKLLLETLAKELPSGTIRYSS------QVVSIEESGHFKLLHLADGTILKTKVLIGCDGVNSIVAKWLGFKNPA 80 (315)
Q Consensus 7 ~~~~i~R~~L~~~L~~~~~~~~i~~~~------~v~~~~~~~~~~~v~~~~g~~~~ad~vVgADG~~S~vr~~l~~~~~~ 80 (315)
-.+++.|..+.+.|.++.|.-+|+++. ....++..+....|++.+|.++++|++|||||++|.||++|+...|.
T Consensus 96 i~r~~~r~ll~~lL~~a~~~~~ikf~~~~~~~~~~~~~~~~~~~~~v~l~~g~~~~~dlligCDGa~S~Vr~~l~~~~p~ 175 (420)
T KOG2614|consen 96 ILRINRRNLLQELLAEALPTGTIKFHSNLSCTSKDVEIETLGKKLVVHLSDGTTVKGDLLIGCDGAYSKVRKWLGFKEPR 175 (420)
T ss_pred HHHHHHHHHHHHHHHhhcCCCeeecccccccccccceeeecccccceecCCCcEEEeeEEEEcCchHHHHHHHhcccCCc
Confidence 355678888888888888888888886 44455555566788999999999999999999999999999888899
Q ss_pred cccceEEEeeeecCCCCCCCCceEEEecCCeEEEEEecCCCeEEEEEEeeCCCCCcccccChHHHHHHHHHHhcCCChHH
Q 021278 81 FVGRSAIRGYSDFKGSHGFEPNFLQFFGKGLRSGFIPCDDQTIYWFFTWTSSSQDKELEDHSAELKQFVLGKLHDLPAQV 160 (315)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (315)
|.++.++++.--++...++......+.+++.+.+..|......+|....+...........++..++...+..+.|+..+
T Consensus 176 ~~~~~ayrg~~~~~~~~~~~~~vf~~~~~~~~~~~~~~~~~~~y~~~~k~~t~t~~~~~~e~~~l~~~~~~v~~~~~en~ 255 (420)
T KOG2614|consen 176 YDGSQAYRGLGFIPNGIPFGKKVFAIYGNGLHSWPRPGFHLIAYWFLDKSLTSTDFAPFDEPEKLKKTSLEVVDFFPENF 255 (420)
T ss_pred ceeEEEEeeeeeccCCCCcccceecccCCeEEEcccCCceEEEEEeecCCcccccccCcCCHHHHhhhHHHHHHHhHHhH
Confidence 99999999987666555543333333334444433333333333333111111111223456667777777777888899
Q ss_pred HHHHHcCCCcceeeccccccCcccccccCcCCCcEEEeccCCCCCCCCCccchhhhhhHHHHHHHHHHHHHhccCCCCCC
Q 021278 161 KAVIEKTPLDSIISSRLQYRQPQEVLWGNISRGSVCVAGDALHPMTPDIGQGGCAALEDGIVLARCINEALKTKQGVGEE 240 (315)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~LiGDAAh~~~P~~G~G~~~al~da~~La~~l~~~~~~~~~~~~~ 240 (315)
.+++.....+.+...++..++|....+.+..+++|+|+|||||+|.|+.|||+|+||||+.+|+++|.++....+..+..
T Consensus 256 ~d~i~~~~~e~i~~t~l~~r~p~~~i~~~~s~~~vvL~GDAaHaM~Pf~GQG~n~a~ED~~VLa~~L~~~~~d~s~~~~~ 335 (420)
T KOG2614|consen 256 PDIIELTGEESIVRTPLADRPPWPLISVKCSPGNVVLLGDAAHAMTPFLGQGGNCAFEDCVVLAECLDEAINDVSLAGEE 335 (420)
T ss_pred HHHHHhcChHHhhhchhhhcCCcCeeeeccCCCeEEEecccccccCCcccccccchHHHHHHHHHHHHHhccchhccccc
Confidence 99999888778878888888888766667778899999999999999999999999999999999999987632111211
Q ss_pred c--hhhhhHHHHHHHHHHHHhhhhhHHHHHHHHHHhhhhhccCchH--HHHHHHHHHHHHHHhhhcccccccCCC
Q 021278 241 D--EEEFNKRVEMGLKRYAKERRWRCFELISIAYLVGSIQQSDGKI--LNFLRDKILASFLVGLLLKKADFDCGN 311 (315)
Q Consensus 241 ~--~~~s~~~~~~~l~~Y~~~r~~~~~~~~~~s~~~~~~~~~~~~~--~~~~r~~~l~~~~~~~~~~~~~~~~~~ 311 (315)
- -+.+...++.+...|..+|..+.-++.-.+...+.+-....|. ...+|+..+-..+.+...+...+++|.
T Consensus 336 ~s~~~e~~~~ie~a~~~Y~~~r~~r~~rl~~~~~l~gi~~~s~~~l~~m~~F~d~~ys~~l~~~~~~~~~~~~g~ 410 (420)
T KOG2614|consen 336 YSRENESHAIIELAMYSYKEERWRRLLRLKVDAYLVGILPQSFGPLYLMVSFRDIIYSEALERLGIKKKILNDGS 410 (420)
T ss_pred eecccchhHHHHHHHHHHHHHHHHHHhhhhhhheeeEeccccccchhhccchhhhhHHHHHHHHHhhhhhhcccc
Confidence 1 1333445789999999999777777766666666666666666 556666666666665666666666664
No 16
>PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=100.00 E-value=2.1e-33 Score=254.55 Aligned_cols=260 Identities=20% Similarity=0.208 Sum_probs=184.5
Q ss_pred eeeeHHHHHHHHHhhC---CCCcEEecceEEEEEeeCCeeEEEecCCCEEeecEEEecCCCchhhhhhhCCCCCcc-ccc
Q 021278 9 RCVRRKLLLETLAKEL---PSGTIRYSSQVVSIEESGHFKLLHLADGTILKTKVLIGCDGVNSIVAKWLGFKNPAF-VGR 84 (315)
Q Consensus 9 ~~i~R~~L~~~L~~~~---~~~~i~~~~~v~~~~~~~~~~~v~~~~g~~~~ad~vVgADG~~S~vr~~l~~~~~~~-~~~ 84 (315)
+.+.|..|...|++++ ++++++++++|++++.++++++|++++|.+++||+||||||.+|.+|+.+++..... +..
T Consensus 105 ~~i~~~~l~~~L~~~~~~~~~i~i~~~~~v~~~~~~~~~~~v~~~~g~~~~~~lvIgADG~~S~vR~~~gi~~~~~~~~~ 184 (384)
T PRK08849 105 YIVENRLIQLGLWQQFAQYPNLTLMCPEKLADLEFSAEGNRVTLESGAEIEAKWVIGADGANSQVRQLAGIGITAWDYRQ 184 (384)
T ss_pred EEEEcHHHHHHHHHHHHhCCCeEEECCCceeEEEEcCCeEEEEECCCCEEEeeEEEEecCCCchhHHhcCCCceeccCCC
Confidence 5677778999998875 468999999999999998999999999999999999999999999999998763322 222
Q ss_pred eEEEeeeecCCCCCCCCceEEEecCCeEEEEEecCCCeEEEEEEeeCCCCC--cccccChHHHHHHHHHHhcCCChHHHH
Q 021278 85 SAIRGYSDFKGSHGFEPNFLQFFGKGLRSGFIPCDDQTIYWFFTWTSSSQD--KELEDHSAELKQFVLGKLHDLPAQVKA 162 (315)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (315)
.++...+...... .+..+..++..+.. .++|+.++...+ .|...... .....+++.+.+.+.+.+.+....+
T Consensus 185 ~~~v~~~~~~~~~-~~~~~~~~~~~g~~-~~~pl~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-- 258 (384)
T PRK08849 185 HCMLINVETEQPQ-QDITWQQFTPSGPR-SFLPLCGNQGSL--VWYDSPKRIKQLSAMNPEQLRSEILRHFPAELGEI-- 258 (384)
T ss_pred eEEEEEEEcCCCC-CCEEEEEeCCCCCE-EEeEcCCCceEE--EEECCHHHHHHHHcCCHHHHHHHHHHHhhhhhCcE--
Confidence 3333333333222 12334444444444 357887664322 22222111 1122356677777776654322111
Q ss_pred HHHcCCCcceeeccccccCcccccccCcCCCcEEEeccCCCCCCCCCccchhhhhhHHHHHHHHHHHHHhccCCCCCCch
Q 021278 163 VIEKTPLDSIISSRLQYRQPQEVLWGNISRGSVCVAGDALHPMTPDIGQGGCAALEDGIVLARCINEALKTKQGVGEEDE 242 (315)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~LiGDAAh~~~P~~G~G~~~al~da~~La~~l~~~~~~~~~~~~~~~ 242 (315)
.......+++. ...+++|.+||++|||||||.|+|+.|||+|+||+||..|+++|... .
T Consensus 259 -----~~~~~~~~~l~-----~~~~~~~~~grv~LlGDAAH~~~P~~GQG~n~al~Da~~L~~~l~~~--~--------- 317 (384)
T PRK08849 259 -----KVLQHGSFPLT-----RRHAQQYVKNNCVLLGDAAHTINPLAGQGVNLGFKDVDVLLAETEKQ--G--------- 317 (384)
T ss_pred -----EeccceEeecc-----ccccchhccCCEEEEEcccccCCCCccchHhHHHHHHHHHHHHHHhc--C---------
Confidence 11112223321 12345899999999999999999999999999999999999988641 1
Q ss_pred hhhhHHHHHHHHHHHHhhhhhHHHHHHHHHHhhhhhccCchHHHHHHHHHHHHHHHh
Q 021278 243 EEFNKRVEMGLKRYAKERRWRCFELISIAYLVGSIQQSDGKILNFLRDKILASFLVG 299 (315)
Q Consensus 243 ~~s~~~~~~~l~~Y~~~r~~~~~~~~~~s~~~~~~~~~~~~~~~~~r~~~l~~~~~~ 299 (315)
...+++|+.|+++|+++....+..++.+.++|+..++....+|+..|..+-..
T Consensus 318 ----~~~~~~L~~Ye~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~l~~~~~~ 370 (384)
T PRK08849 318 ----VLNDASFARYERRRRPDNLLMQTGMDLFYKTFSNSLTPLKFVRNAALKLAENS 370 (384)
T ss_pred ----CCcHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHhcc
Confidence 24578999999999999999999999999999998888999999999754433
No 17
>PRK09126 hypothetical protein; Provisional
Probab=100.00 E-value=2.4e-33 Score=255.19 Aligned_cols=268 Identities=17% Similarity=0.171 Sum_probs=196.0
Q ss_pred ceeeeHHHHHHHHHhhC---CCCcEEecceEEEEEeeCCeeEEEecCCCEEeecEEEecCCCchhhhhhhCCCCC-cccc
Q 021278 8 MRCVRRKLLLETLAKEL---PSGTIRYSSQVVSIEESGHFKLLHLADGTILKTKVLIGCDGVNSIVAKWLGFKNP-AFVG 83 (315)
Q Consensus 8 ~~~i~R~~L~~~L~~~~---~~~~i~~~~~v~~~~~~~~~~~v~~~~g~~~~ad~vVgADG~~S~vr~~l~~~~~-~~~~ 83 (315)
.+.++|..|.+.|++++ ++++|+++++|++++.+++++.|++++|++++||+||||||.+|.+|+.+++... ...+
T Consensus 104 g~~~~~~~l~~~l~~~~~~~~g~~i~~~~~v~~~~~~~~~~~v~~~~g~~~~a~~vI~AdG~~S~vr~~~g~~~~~~~~~ 183 (392)
T PRK09126 104 GYLVPNHLIRRAAYEAVSQQDGIELLTGTRVTAVRTDDDGAQVTLANGRRLTARLLVAADSRFSATRRQLGIGADMHDFG 183 (392)
T ss_pred eEEEeHHHHHHHHHHHHhhCCCcEEEcCCeEEEEEEcCCeEEEEEcCCCEEEeCEEEEeCCCCchhhHhcCCCccccccC
Confidence 45689999999999876 4699999999999998888888999999999999999999999999999986632 2334
Q ss_pred ceEEEeeeecCCCCCCCCceEEEecCCeEEEEEecCCCeEEEEEEeeCCCCCcccccChHHHHHHHHHHhcCCChHHHHH
Q 021278 84 RSAIRGYSDFKGSHGFEPNFLQFFGKGLRSGFIPCDDQTIYWFFTWTSSSQDKELEDHSAELKQFVLGKLHDLPAQVKAV 163 (315)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (315)
...+.+.+..+.. .......+++.+.+++++|..++..+|++.+..+........+.+++.+++.+.+.......
T Consensus 184 ~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--- 258 (392)
T PRK09126 184 RTMLVCRMRHELP--HHHTAWEWFGYGQTLALLPLNGHLSSLVLTLPPDQIEALLALDPEAFAAEVTARFKGRLGAM--- 258 (392)
T ss_pred CeEEEEEEeccCC--CCCEEEEEecCCCCeEEeECCCCCEEEEEECCHHHHHHHHcCCHHHHHHHHHHHHhhhccCe---
Confidence 4444433333221 12334556777778889999988766665443221111122345566666665554321111
Q ss_pred HHcCCCcceeeccccccCcccccccCcCCCcEEEeccCCCCCCCCCccchhhhhhHHHHHHHHHHHHHhccCCCCCCchh
Q 021278 164 IEKTPLDSIISSRLQYRQPQEVLWGNISRGSVCVAGDALHPMTPDIGQGGCAALEDGIVLARCINEALKTKQGVGEEDEE 243 (315)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~LiGDAAh~~~P~~G~G~~~al~da~~La~~l~~~~~~~~~~~~~~~~ 243 (315)
.. ......+++.. ..+++|..+|++|+|||||.++|+.|||+|+||+||..|+++|..++... .
T Consensus 259 -~~--~~~~~~~~~~~-----~~~~~~~~~rv~LvGDAAh~~~P~~GqG~~~ai~da~~la~~L~~~~~~~----~---- 322 (392)
T PRK09126 259 -RL--VSSRHAYPLVA-----VYAHRFVAKRFALIGDAAVGMHPVTAHGFNLGLKGQDILARLILAAARRG----Q---- 322 (392)
T ss_pred -EE--cCCCcEeechH-----HHHHHHhhcceEEEehhhhcCCCcccchhhhhHHHHHHHHHHHHHHHhcC----C----
Confidence 00 11222333322 22357899999999999999999999999999999999999999876531 0
Q ss_pred hhhHHHHHHHHHHHHhhhhhHHHHHHHHHHhhhhhccCchHHHHHHHHHHHHHHH
Q 021278 244 EFNKRVEMGLKRYAKERRWRCFELISIAYLVGSIQQSDGKILNFLRDKILASFLV 298 (315)
Q Consensus 244 ~s~~~~~~~l~~Y~~~r~~~~~~~~~~s~~~~~~~~~~~~~~~~~r~~~l~~~~~ 298 (315)
....+++|+.|+++|++++..++..++.+..+++.+++....+|+++++.+..
T Consensus 323 --~~~~~~~l~~Y~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ 375 (392)
T PRK09126 323 --DIGAASLLERYERKHRLATRPLYHATNAIAALYTDDRPPARLLRRAVLRAANR 375 (392)
T ss_pred --CCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHHhh
Confidence 11357899999999999999999999999999999999999999999986653
No 18
>PRK06847 hypothetical protein; Provisional
Probab=100.00 E-value=1.6e-32 Score=248.41 Aligned_cols=263 Identities=22% Similarity=0.336 Sum_probs=197.7
Q ss_pred ceeeeHHHHHHHHHhhC--CCCcEEecceEEEEEeeCCeeEEEecCCCEEeecEEEecCCCchhhhhhh-CCC-CCcccc
Q 021278 8 MRCVRRKLLLETLAKEL--PSGTIRYSSQVVSIEESGHFKLLHLADGTILKTKVLIGCDGVNSIVAKWL-GFK-NPAFVG 83 (315)
Q Consensus 8 ~~~i~R~~L~~~L~~~~--~~~~i~~~~~v~~~~~~~~~~~v~~~~g~~~~ad~vVgADG~~S~vr~~l-~~~-~~~~~~ 83 (315)
...++|..|.+.|.+.+ .+++++++++|++++.+++++.|.+++|++++||+||+|||.+|.+|+.+ +.. .+.+.+
T Consensus 101 ~~~i~r~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~~~~v~~~~g~~~~ad~vI~AdG~~s~~r~~l~~~~~~~~~~g 180 (375)
T PRK06847 101 GGGIMRPALARILADAARAAGADVRLGTTVTAIEQDDDGVTVTFSDGTTGRYDLVVGADGLYSKVRSLVFPDEPEPEYTG 180 (375)
T ss_pred cccCcHHHHHHHHHHHHHHhCCEEEeCCEEEEEEEcCCEEEEEEcCCCEEEcCEEEECcCCCcchhhHhcCCCCCceecc
Confidence 46789999999999877 35899999999999988888889999999999999999999999999988 543 556677
Q ss_pred ceEEEeeeecCCCCCCCCceEEEecCCeEEEEEecCCCeEEEEEEeeCCCCCcccccChHHHHHHHHHHhcCCCh-HHHH
Q 021278 84 RSAIRGYSDFKGSHGFEPNFLQFFGKGLRSGFIPCDDQTIYWFFTWTSSSQDKELEDHSAELKQFVLGKLHDLPA-QVKA 162 (315)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 162 (315)
...+.+.++.+.. .. ....+.+++..++++|..++..++++....+. ....+.+.+.+.+.+.+..+.+ ....
T Consensus 181 ~~~~~~~~~~~~~--~~-~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (375)
T PRK06847 181 QGVWRAVLPRPAE--VD-RSLMYLGPTTKAGVVPLSEDLMYLFVTEPRPD---NPRIEPDTLAALLRELLAPFGGPVLQE 254 (375)
T ss_pred ceEEEEEecCCCC--cc-ceEEEeCCCcEEEEEcCCCCeEEEEEeccCcc---cccCChHHHHHHHHHHHhhcCchHHHH
Confidence 7777766544322 12 23566777788889999888765554432211 1233456667778888877765 4444
Q ss_pred HHHcCC-CcceeeccccccCcccccccCcCCCcEEEeccCCCCCCCCCccchhhhhhHHHHHHHHHHHHHhccCCCCCCc
Q 021278 163 VIEKTP-LDSIISSRLQYRQPQEVLWGNISRGSVCVAGDALHPMTPDIGQGGCAALEDGIVLARCINEALKTKQGVGEED 241 (315)
Q Consensus 163 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~v~LiGDAAh~~~P~~G~G~~~al~da~~La~~l~~~~~~~~~~~~~~ 241 (315)
+..... .......++..... ..+|..|||+|||||||.++|+.|||+|+||+||..|+++|.+ .
T Consensus 255 ~~~~~~~~~~~~~~~~~~~~~----~~~~~~grv~LiGDAaH~~~P~~GqG~n~aieDA~~La~~L~~---~-------- 319 (375)
T PRK06847 255 LREQITDDAQVVYRPLETLLV----PAPWHRGRVVLIGDAAHATTPHLAQGAGMAIEDAIVLAEELAR---H-------- 319 (375)
T ss_pred HHHhcCCccceeeccHhhccC----CCCccCCeEEEEechhccCCCCccccHHHHHHHHHHHHHHHhh---C--------
Confidence 443221 11222333322221 2368999999999999999999999999999999999999976 1
Q ss_pred hhhhhHHHHHHHHHHHHhhhhhHHHHHHHHHHhhhhhccCch---HHHHHHHHHHHHH
Q 021278 242 EEEFNKRVEMGLKRYAKERRWRCFELISIAYLVGSIQQSDGK---ILNFLRDKILASF 296 (315)
Q Consensus 242 ~~~s~~~~~~~l~~Y~~~r~~~~~~~~~~s~~~~~~~~~~~~---~~~~~r~~~l~~~ 296 (315)
...+++|+.|+++|++++..+++.++.+...+....+ ....+|++++..+
T Consensus 320 -----~~~~~al~~Y~~~R~~r~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 372 (375)
T PRK06847 320 -----DSLEAALQAYYARRWERCRMVVEASARIGRIEIEGGDKAEHAGLMRESMELLA 372 (375)
T ss_pred -----CcHHHHHHHHHHHHHHHHHHHHHHHHHhhheecCCCCccchHHHHHHHHHHhc
Confidence 2578899999999999999999999999999865555 6667777776654
No 19
>PRK06996 hypothetical protein; Provisional
Probab=100.00 E-value=2.7e-33 Score=255.00 Aligned_cols=265 Identities=15% Similarity=0.137 Sum_probs=192.0
Q ss_pred cceeeeHHHHHHHHHhhCCC--CcEEecceEEEEEeeCCeeEEEecCC---CEEeecEEEecCCC-chhhhhhhCCC-CC
Q 021278 7 EMRCVRRKLLLETLAKELPS--GTIRYSSQVVSIEESGHFKLLHLADG---TILKTKVLIGCDGV-NSIVAKWLGFK-NP 79 (315)
Q Consensus 7 ~~~~i~R~~L~~~L~~~~~~--~~i~~~~~v~~~~~~~~~~~v~~~~g---~~~~ad~vVgADG~-~S~vr~~l~~~-~~ 79 (315)
..+.++|..|.+.|.+++.+ +++++++++++++.++++++|++.++ ++++||+||||||. +|.+|+.+++. ..
T Consensus 108 ~g~~v~r~~l~~~L~~~~~~~g~~~~~~~~v~~~~~~~~~v~v~~~~~~g~~~i~a~lvIgADG~~~s~~r~~~~~~~~~ 187 (398)
T PRK06996 108 LGYVVRYGSLVAALARAVRGTPVRWLTSTTAHAPAQDADGVTLALGTPQGARTLRARIAVQAEGGLFHDQKADAGDSARR 187 (398)
T ss_pred CEEEEEhHHHHHHHHHHHHhCCCEEEcCCeeeeeeecCCeEEEEECCCCcceEEeeeEEEECCCCCchHHHHHcCCCcee
Confidence 35789999999999998743 88999999999999899999999865 58999999999996 58889888766 33
Q ss_pred ccccceEEEeeeecCCCCCCCCceEEEecCCeEEEEEecCCCeEE-EEEEeeCCCCC--cccccChHHHHHHHHHHhcCC
Q 021278 80 AFVGRSAIRGYSDFKGSHGFEPNFLQFFGKGLRSGFIPCDDQTIY-WFFTWTSSSQD--KELEDHSAELKQFVLGKLHDL 156 (315)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~-~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~ 156 (315)
.+++..++++.+....+.. ...+..+ ...+.+.++|..++... +.+.+...... .....+.+++.+.+.+.+.+.
T Consensus 188 ~~~~~~~~~~~v~~~~~~~-~~~~~~~-~~~G~~~~lp~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 265 (398)
T PRK06996 188 RDYGQTAIVGTVTVSAPRP-GWAWERF-THEGPLALLPLGGPRQADYALVWCCAPDEAARRAALPDDAFLAELGAAFGTR 265 (398)
T ss_pred eecCCeEEEEEEEccCCCC-CEEEEEe-cCCCCeEEeECCCCCCCcEEEEEECCHHHHHHHHcCCHHHHHHHHHHHhccc
Confidence 4467778888776543322 1223334 44455778898866421 22333222211 112345566777777766543
Q ss_pred ChHHHHHHHcCCCcceeeccccccCcccccccCcCCCcEEEeccCCCCCCCCCccchhhhhhHHHHHHHHHHHHHhccCC
Q 021278 157 PAQVKAVIEKTPLDSIISSRLQYRQPQEVLWGNISRGSVCVAGDALHPMTPDIGQGGCAALEDGIVLARCINEALKTKQG 236 (315)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~LiGDAAh~~~P~~G~G~~~al~da~~La~~l~~~~~~~~~ 236 (315)
...+ .... ....+++.. ...++|..|||+|||||||.++|+.|||+|+||+||..|+++|.. .+
T Consensus 266 ~~~~---~~~~---~~~~~~l~~-----~~~~~~~~grv~LiGDAAH~~~P~~GQG~n~ai~Da~~La~~L~~--~~--- 329 (398)
T PRK06996 266 MGRF---TRIA---GRHAFPLGL-----NAARTLVNGRIAAVGNAAQTLHPVAGQGLNLGLRDAHTLADALSD--HG--- 329 (398)
T ss_pred cCce---EEec---ceEEEeeec-----ccccceecCCEEEEEhhhccCCcccchhHHHHHHHHHHHHHHHHh--cC---
Confidence 2211 1111 111233321 223479999999999999999999999999999999999999965 11
Q ss_pred CCCCchhhhhHHHHHHHHHHHHhhhhhHHHHHHHHHHhhhhhccCchHHHHHHHHHHHHHHHhh
Q 021278 237 VGEEDEEEFNKRVEMGLKRYAKERRWRCFELISIAYLVGSIQQSDGKILNFLRDKILASFLVGL 300 (315)
Q Consensus 237 ~~~~~~~~s~~~~~~~l~~Y~~~r~~~~~~~~~~s~~~~~~~~~~~~~~~~~r~~~l~~~~~~~ 300 (315)
....+|+.|+++|++++..++..+..+..+++..++....+|+..+..+....
T Consensus 330 -----------~~~~~L~~Y~~~R~~~~~~~~~~s~~l~~~~~~~~~~~~~~R~~~l~~~~~~~ 382 (398)
T PRK06996 330 -----------ATPLALATFAARRALDRRVTIGATDLLPRLFTVDSRPLAHLRGAALTALEFVP 382 (398)
T ss_pred -----------CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHhHHHHHHhhCH
Confidence 24567999999999999999999999999999999999999999997544433
No 20
>PRK07333 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=100.00 E-value=9.3e-33 Score=252.25 Aligned_cols=263 Identities=20% Similarity=0.245 Sum_probs=190.7
Q ss_pred eeeeHHHHHHHHHhhCC--CCcEEecceEEEEEeeCCeeEEEecCCCEEeecEEEecCCCchhhhhhhCCCCCc-cccce
Q 021278 9 RCVRRKLLLETLAKELP--SGTIRYSSQVVSIEESGHFKLLHLADGTILKTKVLIGCDGVNSIVAKWLGFKNPA-FVGRS 85 (315)
Q Consensus 9 ~~i~R~~L~~~L~~~~~--~~~i~~~~~v~~~~~~~~~~~v~~~~g~~~~ad~vVgADG~~S~vr~~l~~~~~~-~~~~~ 85 (315)
+.++|..|.+.|.+++. +++++++++|++++.+++++.|++++|++++||+||+|||.+|.+|+.+|+.... ..+..
T Consensus 106 ~~i~r~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~~v~v~~~~g~~~~ad~vI~AdG~~S~vr~~~g~~~~~~~~~~~ 185 (403)
T PRK07333 106 HMVENRVLINALRKRAEALGIDLREATSVTDFETRDEGVTVTLSDGSVLEARLLVAADGARSKLRELAGIKTVGWDYGQS 185 (403)
T ss_pred EEeEhHHHHHHHHHHHHhCCCEEEcCCEEEEEEEcCCEEEEEECCCCEEEeCEEEEcCCCChHHHHHcCCCcccccCCCE
Confidence 57999999999999873 5899999999999998888999999999999999999999999999999876432 23445
Q ss_pred EEEeeeecCCCCCCCCceEEEecCCeEEEEEecCCCeEEEEEEeeCCCCC--cccccChHHHHHHHHHHhcCCChHHHHH
Q 021278 86 AIRGYSDFKGSHGFEPNFLQFFGKGLRSGFIPCDDQTIYWFFTWTSSSQD--KELEDHSAELKQFVLGKLHDLPAQVKAV 163 (315)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (315)
++.+.+...... ......++..++.++++|.+++...|. +..+... .......+.+.+.+.+.+..+...+.
T Consensus 186 ~~~~~~~~~~~~--~~~~~~~~~~~g~~~~~Pl~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-- 259 (403)
T PRK07333 186 GIVCTVEHERPH--GGRAEEHFLPAGPFAILPLKGNRSSLV--WTERTADAERLVALDDLVFEAELEQRFGHRLGELK-- 259 (403)
T ss_pred EEEEEEEcCCCC--CCEEEEEeCCCCceEEeECCCCCeEEE--EECCHHHHHHHHCCCHHHHHHHHHHHhhhhcCceE--
Confidence 555554443222 122334445566677999998876543 3222111 11122334455555555443322111
Q ss_pred HHcCCCcceeeccccccCcccccccCcCCCcEEEeccCCCCCCCCCccchhhhhhHHHHHHHHHHHHHhccCCCCCCchh
Q 021278 164 IEKTPLDSIISSRLQYRQPQEVLWGNISRGSVCVAGDALHPMTPDIGQGGCAALEDGIVLARCINEALKTKQGVGEEDEE 243 (315)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~LiGDAAh~~~P~~G~G~~~al~da~~La~~l~~~~~~~~~~~~~~~~ 243 (315)
.. .....+++.. ...++|+.+||+|||||||.++|+.|||+|+||+||..|+++|...+... .
T Consensus 260 --~~--~~~~~~~~~~-----~~~~~~~~grv~LvGDAAH~~~P~~GqG~n~ai~Da~~La~~L~~~~~~~----~---- 322 (403)
T PRK07333 260 --VL--GKRRAFPLGL-----TLARSFVAPRFALVGDAAHGIHPIAGQGLNLGLKDVAALAEVVVEAARLG----L---- 322 (403)
T ss_pred --ec--cCccEeechh-----hhhhhccCCCEEEEechhhcCCCccccchhhhHHHHHHHHHHHHHHHhcC----C----
Confidence 00 1111222211 23457899999999999999999999999999999999999999876531 0
Q ss_pred hhhHHHHHHHHHHHHhhhhhHHHHHHHHHHhhhhhccCchHHHHHHHHHHHHH
Q 021278 244 EFNKRVEMGLKRYAKERRWRCFELISIAYLVGSIQQSDGKILNFLRDKILASF 296 (315)
Q Consensus 244 ~s~~~~~~~l~~Y~~~r~~~~~~~~~~s~~~~~~~~~~~~~~~~~r~~~l~~~ 296 (315)
....+++|+.|+++|+++....+..++.+..+++.+++....+|+..++.+
T Consensus 323 --~~~~~~~L~~Ye~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~ 373 (403)
T PRK07333 323 --DIGSLDVLERYQRWRRFDTVRMGVTTDVLNRLFSNDSTLLRSVRDIGLGLV 373 (403)
T ss_pred --CCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHH
Confidence 013578999999999999999999999999999999999999999888754
No 21
>PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=100.00 E-value=4.9e-33 Score=255.02 Aligned_cols=266 Identities=19% Similarity=0.195 Sum_probs=185.3
Q ss_pred eeeeHHHHHHHHHhhC---CCCcEEecceEEEEEeeCCeeEEEecCC---CEEeecEEEecCCCchhhhhhhCCCCCccc
Q 021278 9 RCVRRKLLLETLAKEL---PSGTIRYSSQVVSIEESGHFKLLHLADG---TILKTKVLIGCDGVNSIVAKWLGFKNPAFV 82 (315)
Q Consensus 9 ~~i~R~~L~~~L~~~~---~~~~i~~~~~v~~~~~~~~~~~v~~~~g---~~~~ad~vVgADG~~S~vr~~l~~~~~~~~ 82 (315)
+.+.+..|.+.|++++ ++++++++++|++++.++++++|++.++ .+++||+||||||.+|.+|+.+++....+.
T Consensus 116 ~~~~~~~l~~~L~~~~~~~~~v~i~~~~~v~~v~~~~~~~~v~~~~~~~~~~i~adlvIgADG~~S~vR~~~~~~~~~~~ 195 (415)
T PRK07364 116 YVGEHQVLLEALQEFLQSCPNITWLCPAEVVSVEYQQDAATVTLEIEGKQQTLQSKLVVAADGARSPIRQAAGIKTKGWK 195 (415)
T ss_pred EEEecHHHHHHHHHHHhcCCCcEEEcCCeeEEEEecCCeeEEEEccCCcceEEeeeEEEEeCCCCchhHHHhCCCceeec
Confidence 3444457888888876 4689999999999998888888888743 369999999999999999999987644332
Q ss_pred -cceEEEeeeecCCCCCCCCceEEEecCCeEEEEEecCCCeEEEEEEeeCCCCCcccccChHHHHHHHHHHhcCCChHHH
Q 021278 83 -GRSAIRGYSDFKGSHGFEPNFLQFFGKGLRSGFIPCDDQTIYWFFTWTSSSQDKELEDHSAELKQFVLGKLHDLPAQVK 161 (315)
Q Consensus 83 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (315)
...++.+.+..+.... ...+..|+.. +.++++|++++...++.....+........+.+++.+.+.+.+.++.+.+.
T Consensus 196 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~-g~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 273 (415)
T PRK07364 196 YWQSCVTATVKHEAPHN-DIAYERFWPS-GPFAILPLPGNRCQIVWTAPHAQAKALLALPEAEFLAELQQRYGDQLGKLE 273 (415)
T ss_pred CCCEEEEEEEEccCCCC-CEEEEEecCC-CCeEEeECCCCCEEEEEECCHHHHHHHHCCCHHHHHHHHHHHhhhhhcCce
Confidence 2334444444332221 1223334444 456689998887555433211110111223456666777766654433221
Q ss_pred HHHHcCCCcceeeccccccCcccccccCcCCCcEEEeccCCCCCCCCCccchhhhhhHHHHHHHHHHHHHhccCCCCCCc
Q 021278 162 AVIEKTPLDSIISSRLQYRQPQEVLWGNISRGSVCVAGDALHPMTPDIGQGGCAALEDGIVLARCINEALKTKQGVGEED 241 (315)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~LiGDAAh~~~P~~G~G~~~al~da~~La~~l~~~~~~~~~~~~~~ 241 (315)
.. .....+++... .+++|+++|++|||||||+++|+.|||+|+||+||..|+++|...+... .
T Consensus 274 ----~~--~~~~~~~~~~~-----~~~~~~~~rv~LvGDAAh~~~P~~GqG~n~al~DA~~La~~L~~~~~~~----~-- 336 (415)
T PRK07364 274 ----LL--GDRFLFPVQLM-----QSDRYVQHRLALVGDAAHCCHPVGGQGLNLGIRDAAALAQVLQTAHQRG----E-- 336 (415)
T ss_pred ----ec--CCCceecchhh-----hhhhhcCCcEEEEecccccCCCcccccHhHHHHHHHHHHHHHHHHHhcC----C--
Confidence 00 11223333222 2357899999999999999999999999999999999999998865431 0
Q ss_pred hhhhhHHHHHHHHHHHHhhhhhHHHHHHHHHHhhhhhccCchHHHHHHHHHHHHHH
Q 021278 242 EEEFNKRVEMGLKRYAKERRWRCFELISIAYLVGSIQQSDGKILNFLRDKILASFL 297 (315)
Q Consensus 242 ~~~s~~~~~~~l~~Y~~~r~~~~~~~~~~s~~~~~~~~~~~~~~~~~r~~~l~~~~ 297 (315)
......+|+.|++.|+++....+..++.+..++..++++...+|+..++.+.
T Consensus 337 ----~~~~~~~L~~Y~~~R~~~~~~~~~~s~~~~~~~~~~~~~~~~~r~~~~~~~~ 388 (415)
T PRK07364 337 ----DIGSLAVLKRYERWRKRENWLILGFTDLLDRLFSNQWWPLVVVRRLGLWLLR 388 (415)
T ss_pred ----CcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHh
Confidence 0012479999999999999999999999999999999999999999887544
No 22
>PRK07236 hypothetical protein; Provisional
Probab=100.00 E-value=2.1e-32 Score=248.27 Aligned_cols=248 Identities=19% Similarity=0.252 Sum_probs=184.3
Q ss_pred eeeHHHHHHHHHhhCCCCcEEecceEEEEEeeCCeeEEEecCCCEEeecEEEecCCCchhhhhhh-CCCCCccccceEEE
Q 021278 10 CVRRKLLLETLAKELPSGTIRYSSQVVSIEESGHFKLLHLADGTILKTKVLIGCDGVNSIVAKWL-GFKNPAFVGRSAIR 88 (315)
Q Consensus 10 ~i~R~~L~~~L~~~~~~~~i~~~~~v~~~~~~~~~~~v~~~~g~~~~ad~vVgADG~~S~vr~~l-~~~~~~~~~~~~~~ 88 (315)
.+.|..|.+.|.++++++++++|++|++++.++++++|++++|++++||+||||||++|.||+.+ +...+.|.+..+++
T Consensus 96 ~~~~~~l~~~L~~~~~~~~i~~~~~v~~i~~~~~~v~v~~~~g~~~~ad~vIgADG~~S~vR~~l~~~~~~~~~g~~~~~ 175 (386)
T PRK07236 96 QTSWNVLYRALRAAFPAERYHLGETLVGFEQDGDRVTARFADGRRETADLLVGADGGRSTVRAQLLPDVRPTYAGYVAWR 175 (386)
T ss_pred ccCHHHHHHHHHHhCCCcEEEcCCEEEEEEecCCeEEEEECCCCEEEeCEEEECCCCCchHHHHhCCCCCCCcCCeEEEE
Confidence 46789999999999888899999999999998888999999999999999999999999999988 43466677888888
Q ss_pred eeeecCCCC-----CCCCceEEEecCCeEEEEEecCCC---------eEEEEEEeeCCCCC---c--------c------
Q 021278 89 GYSDFKGSH-----GFEPNFLQFFGKGLRSGFIPCDDQ---------TIYWFFTWTSSSQD---K--------E------ 137 (315)
Q Consensus 89 ~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~p~~~~---------~~~~~~~~~~~~~~---~--------~------ 137 (315)
+.+...... .....+..+.+++.++..+|+++. ...|......+... . .
T Consensus 176 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (386)
T PRK07236 176 GLVDEAALPPEARAALRDRFTFQLGPGSHILGYPVPGEDGSTEPGKRRYNWVWYRNAPAGEELDELLTDRDGTRRPFSVP 255 (386)
T ss_pred EecchHHcCchhhhhcccceEEEEcCCceEEEEECCCCCCCcCCCCcEEEEEEEecCCCccchhhhcccCCCccccCCCC
Confidence 775432111 112334555677777778887642 23343333222100 0 0
Q ss_pred cccChHHHHHHHHHHhcC-CChHHHHHHHcCCCcceeeccccccCcccccccCcCCCcEEEeccCCCCCCCCCccchhhh
Q 021278 138 LEDHSAELKQFVLGKLHD-LPAQVKAVIEKTPLDSIISSRLQYRQPQEVLWGNISRGSVCVAGDALHPMTPDIGQGGCAA 216 (315)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~LiGDAAh~~~P~~G~G~~~a 216 (315)
.....++..+.+.+.+.+ |++.+..++...... ..+++.... .++|..|||+|||||||+++|+.|||+|+|
T Consensus 256 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~-----~~~~~~grv~LiGDAAH~~~P~~GqG~n~a 328 (386)
T PRK07236 256 PGALRDDVLAELRDDAAELLAPVFAELVEATAQP--FVQAIFDLE-----VPRMAFGRVALLGDAAFVARPHTAAGVAKA 328 (386)
T ss_pred ccccCHHHHHHHHHHHHHhcCHHHHHHHhhCcCc--hhhhhhccc-----CcccccCcEEEEecccccCCCcchhhHHHH
Confidence 011234556677776665 888888888775421 122332221 347899999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHhccCCCCCCchhhhhHHHHHHHHHHHHhhhhhHHHHHHHHHHhhhhhc
Q 021278 217 LEDGIVLARCINEALKTKQGVGEEDEEEFNKRVEMGLKRYAKERRWRCFELISIAYLVGSIQQ 279 (315)
Q Consensus 217 l~da~~La~~l~~~~~~~~~~~~~~~~~s~~~~~~~l~~Y~~~r~~~~~~~~~~s~~~~~~~~ 279 (315)
|+||..|+++|.... ++.+.+|+.|+++|++++..++..++.+...+.
T Consensus 329 ieDA~~La~~L~~~~---------------~~~~~al~~Ye~~R~~r~~~~~~~s~~~~~~~~ 376 (386)
T PRK07236 329 AADAVALAEALAAAA---------------GDIDAALAAWEAERLAVGAAIVARGRRLGARLQ 376 (386)
T ss_pred HHHHHHHHHHHHhcc---------------cchHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 999999999997631 147889999999999999999999999888765
No 23
>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated
Probab=100.00 E-value=6.2e-33 Score=252.39 Aligned_cols=273 Identities=20% Similarity=0.217 Sum_probs=196.2
Q ss_pred ceeeeHHHHHHHHHhhC--CCCcEEecceEEEEEeeCCeeEEEecCCCEEeecEEEecCCCchhhhhhhCCCCCcc-ccc
Q 021278 8 MRCVRRKLLLETLAKEL--PSGTIRYSSQVVSIEESGHFKLLHLADGTILKTKVLIGCDGVNSIVAKWLGFKNPAF-VGR 84 (315)
Q Consensus 8 ~~~i~R~~L~~~L~~~~--~~~~i~~~~~v~~~~~~~~~~~v~~~~g~~~~ad~vVgADG~~S~vr~~l~~~~~~~-~~~ 84 (315)
.+.++|..|.+.|.+++ .+++++++++|++++.++++++|++.+|++++||+||+|||.+|.+|+.+++..+.. +..
T Consensus 107 ~~~v~~~~l~~~L~~~~~~~gv~i~~~~~v~~i~~~~~~v~v~~~~g~~~~a~~vV~AdG~~S~vr~~~g~~~~~~~~~~ 186 (392)
T PRK08773 107 GWIVENDLLVDRLWAALHAAGVQLHCPARVVALEQDADRVRLRLDDGRRLEAALAIAADGAASTLRELAGLPVSRHDYAQ 186 (392)
T ss_pred EEEEEhHHHHHHHHHHHHhCCCEEEcCCeEEEEEecCCeEEEEECCCCEEEeCEEEEecCCCchHHHhhcCCceEEEecc
Confidence 47899999999999876 358999999999999988888899999999999999999999999999998775432 233
Q ss_pred eEEEeeeecCCCCCCCCceEEEecCCeEEEEEecCCCeEEEEEEeeCCCCCcccccChHHHHHHHHHHhcCCChHHHHHH
Q 021278 85 SAIRGYSDFKGSHGFEPNFLQFFGKGLRSGFIPCDDQTIYWFFTWTSSSQDKELEDHSAELKQFVLGKLHDLPAQVKAVI 164 (315)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (315)
.++.+.+....+.. ...+.. +.+++.+.++|.+++...|+..+...........+.+++.+.+.+.+.++...+..
T Consensus 187 ~~~~~~v~~~~~~~-~~~~~~-~~~~g~~~~lP~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~-- 262 (392)
T PRK08773 187 RGVVAFVDTEHPHQ-ATAWQR-FLPTGPLALLPFADGRSSIVWTLPDAEAERVLALDEAAFSRELTQAFAARLGEVRV-- 262 (392)
T ss_pred EEEEEEEEccCCCC-CEEEEE-eCCCCcEEEEECCCCceEEEEECCHHHHHHHHcCCHHHHHHHHHHHHhhhhcCeEe--
Confidence 44444444332221 222333 44555677999988875544433221111112234556666777666543322111
Q ss_pred HcCCCcceeeccccccCcccccccCcCCCcEEEeccCCCCCCCCCccchhhhhhHHHHHHHHHHHHHhccCCCCCCchhh
Q 021278 165 EKTPLDSIISSRLQYRQPQEVLWGNISRGSVCVAGDALHPMTPDIGQGGCAALEDGIVLARCINEALKTKQGVGEEDEEE 244 (315)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~LiGDAAh~~~P~~G~G~~~al~da~~La~~l~~~~~~~~~~~~~~~~~ 244 (315)
. .....+++.. ..+++|..+||+|+|||||.++|+.|||+|+||+||..|+++|.+++... .
T Consensus 263 --~--~~~~~~~l~~-----~~~~~~~~~rv~LiGDAAH~~~P~~GqG~n~al~Da~~La~~L~~~~~~~----~----- 324 (392)
T PRK08773 263 --A--SPRTAFPLRR-----QLVQQYVSGRVLTLGDAAHVVHPLAGQGVNLGLRDVAALQQLVRQAHARR----A----- 324 (392)
T ss_pred --c--CCccEeechh-----hhhhhhcCCcEEEEechhhcCCCchhchhhhhHHHHHHHHHHHHHHHhcC----C-----
Confidence 0 1111233322 23458999999999999999999999999999999999999999876531 0
Q ss_pred hhHHHHHHHHHHHHhhhhhHHHHHHHHHHhhhhhccCchHHHHHHHHHHHHHHHhhhcc
Q 021278 245 FNKRVEMGLKRYAKERRWRCFELISIAYLVGSIQQSDGKILNFLRDKILASFLVGLLLK 303 (315)
Q Consensus 245 s~~~~~~~l~~Y~~~r~~~~~~~~~~s~~~~~~~~~~~~~~~~~r~~~l~~~~~~~~~~ 303 (315)
......+|++|+++|+++..........+.++|.+.++....+|+..+..+...+.+|
T Consensus 325 -~~~~~~~l~~y~~~R~~~~~~~~~~~~~l~~~f~~~~~~~~~~r~~~l~~~~~~~~~k 382 (392)
T PRK08773 325 -DWAAPHRLQRWARTRRSDNTVAAYGFDAINRVFSNDEMHLTLLRGSVLGLAGKLPPLV 382 (392)
T ss_pred -CcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHhhCHHHH
Confidence 0124579999999999998888888789999999999999999999998766555444
No 24
>PRK07538 hypothetical protein; Provisional
Probab=100.00 E-value=2.2e-32 Score=250.24 Aligned_cols=243 Identities=23% Similarity=0.281 Sum_probs=176.8
Q ss_pred cceeeeHHHHHHHHHhhCC---C-CcEEecceEEEEEeeCCeeEEEecCC-----CEEeecEEEecCCCchhhhhhhCCC
Q 021278 7 EMRCVRRKLLLETLAKELP---S-GTIRYSSQVVSIEESGHFKLLHLADG-----TILKTKVLIGCDGVNSIVAKWLGFK 77 (315)
Q Consensus 7 ~~~~i~R~~L~~~L~~~~~---~-~~i~~~~~v~~~~~~~~~~~v~~~~g-----~~~~ad~vVgADG~~S~vr~~l~~~ 77 (315)
+.+.++|..|++.|++++. + .+|+++++|++++++++++.+.+.++ .+++||+||||||.+|.||+.++..
T Consensus 95 ~~~~i~R~~l~~~L~~~~~~~~g~~~i~~~~~v~~~~~~~~~~~~~~~~~~~g~~~~~~adlvIgADG~~S~vR~~l~~~ 174 (413)
T PRK07538 95 PQYSIHRGELQMLLLDAVRERLGPDAVRTGHRVVGFEQDADVTVVFLGDRAGGDLVSVRGDVLIGADGIHSAVRAQLYPD 174 (413)
T ss_pred ceEEEEHHHHHHHHHHHHHhhcCCcEEEcCCEEEEEEecCCceEEEEeccCCCccceEEeeEEEECCCCCHHHhhhhcCC
Confidence 3467999999999998752 3 57999999999998888777777654 3899999999999999999999544
Q ss_pred --CCccccceEEEeeeecCCCCCCCCceEEEec-CCeEEEEEecCCC-------eEEEEEEeeCCCC--CcccccChHHH
Q 021278 78 --NPAFVGRSAIRGYSDFKGSHGFEPNFLQFFG-KGLRSGFIPCDDQ-------TIYWFFTWTSSSQ--DKELEDHSAEL 145 (315)
Q Consensus 78 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~p~~~~-------~~~~~~~~~~~~~--~~~~~~~~~~~ 145 (315)
.+.+.+...+++.++.+... ......+.+ .+..+.++|+.++ .+.|.+....+.. ........+..
T Consensus 175 ~~~~~~~g~~~~~~~~~~~~~~--~~~~~~~~g~~~~~~~~~p~~~~~~~~g~~~~~w~~~~~~~~~~~~~~~~~~~~~~ 252 (413)
T PRK07538 175 EGPPRWNGVMMWRGVTEAPPFL--TGRSMVMAGHLDGKLVVYPISEPVDADGRQLINWVAEVRVDDAGAPRREDWNRPGD 252 (413)
T ss_pred CCCCcccceEEEEEeecCcccc--CCCcEEEEcCCCCEEEEEECCCCcccCCceEEEEEEEEcCCccCCCcccccCCccC
Confidence 56677778888776654321 222223333 3566778998763 5667766643321 11111112333
Q ss_pred HHHHHHHhcCCChH---HHHHHHcCCCcceeeccccccCcccccccCcCCCcEEEeccCCCCCCCCCccchhhhhhHHHH
Q 021278 146 KQFVLGKLHDLPAQ---VKAVIEKTPLDSIISSRLQYRQPQEVLWGNISRGSVCVAGDALHPMTPDIGQGGCAALEDGIV 222 (315)
Q Consensus 146 ~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~LiGDAAh~~~P~~G~G~~~al~da~~ 222 (315)
.+++.+.+.+|... +..++.... .+..+++....+. ++|+.|||+|||||||.|+|++|||+|+||+||..
T Consensus 253 ~~~~~~~~~~~~~~~~~~~~~i~~~~--~~~~~p~~~~~~~----~~w~~grv~LvGDAAH~~~P~~GqG~~~Ai~Da~~ 326 (413)
T PRK07538 253 LEDFLPHFADWRFDWLDVPALIRAAE--AIYEYPMVDRDPL----PRWTRGRVTLLGDAAHPMYPVGSNGASQAILDARA 326 (413)
T ss_pred HHHHHHHhcCCCCCcccHHHHHhcCc--ceeeccccccCCC----CcccCCcEEEEeeccCcCCCCCcccHHHHHHHHHH
Confidence 46666677766543 455665432 3444555544443 47999999999999999999999999999999999
Q ss_pred HHHHHHHHHhccCCCCCCchhhhhHHHHHHHHHHHHhhhhhHHHHHHHHHH
Q 021278 223 LARCINEALKTKQGVGEEDEEEFNKRVEMGLKRYAKERRWRCFELISIAYL 273 (315)
Q Consensus 223 La~~l~~~~~~~~~~~~~~~~~s~~~~~~~l~~Y~~~r~~~~~~~~~~s~~ 273 (315)
|+++|... .+.+++|+.|+++|++++...+..++.
T Consensus 327 La~~L~~~----------------~~~~~aL~~Ye~~R~~~~~~~~~~s~~ 361 (413)
T PRK07538 327 LADALAAH----------------GDPEAALAAYEAERRPATAQIVLANRL 361 (413)
T ss_pred HHHHHHhc----------------CCHHHHHHHHHHHhhHHHHHHHHHhhh
Confidence 99999862 147889999999999999999999888
No 25
>PRK07045 putative monooxygenase; Reviewed
Probab=100.00 E-value=3.8e-32 Score=246.92 Aligned_cols=264 Identities=18% Similarity=0.228 Sum_probs=185.7
Q ss_pred ceeeeHHHHHHHHHhhC---CCCcEEecceEEEEEeeCCe--eEEEecCCCEEeecEEEecCCCchhhhhhh-CCCC--C
Q 021278 8 MRCVRRKLLLETLAKEL---PSGTIRYSSQVVSIEESGHF--KLLHLADGTILKTKVLIGCDGVNSIVAKWL-GFKN--P 79 (315)
Q Consensus 8 ~~~i~R~~L~~~L~~~~---~~~~i~~~~~v~~~~~~~~~--~~v~~~~g~~~~ad~vVgADG~~S~vr~~l-~~~~--~ 79 (315)
.+.++|..|.+.|.+++ ++++++++++|++++.++++ +.|++.+|+++++|+||||||.+|.||+.+ +.+. .
T Consensus 100 ~~~i~r~~l~~~L~~~~~~~~gv~i~~~~~v~~i~~~~~~~~~~v~~~~g~~~~~~~vIgADG~~S~vR~~~~~~~~~~~ 179 (388)
T PRK07045 100 FILIPCEQLRRLLLAKLDGLPNVRLRFETSIERIERDADGTVTSVTLSDGERVAPTVLVGADGARSMIRDDVLRMPAERV 179 (388)
T ss_pred eEEccHHHHHHHHHHHHhcCCCeeEEeCCEEEEEEECCCCcEEEEEeCCCCEEECCEEEECCCCChHHHHHhhCCCcccC
Confidence 46789999999999876 45899999999999987665 468899999999999999999999999964 5542 2
Q ss_pred ccccceEEEeeeecCCCCCCCCceEEEec-CCeEEEEEecCCCeEEEEEEeeCCCCCccc-ccChHHHHHHHHHHhcCCC
Q 021278 80 AFVGRSAIRGYSDFKGSHGFEPNFLQFFG-KGLRSGFIPCDDQTIYWFFTWTSSSQDKEL-EDHSAELKQFVLGKLHDLP 157 (315)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 157 (315)
.+.... +.+.+...... +.....+++ .+++++++|..++...|++.+..+...... ....+++.+.+.+.+ .
T Consensus 180 ~~~~~~-~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~ 253 (388)
T PRK07045 180 PYATPM-AFGTIALTDSV--RECNRLYVDSNQGLAYFYPIGDQATRLVVSFPADEMQGYLADTTRTKLLARLNEFV---G 253 (388)
T ss_pred CCCcce-eEEEEeccCCc--cccceEEEcCCCceEEEEEcCCCcEEEEEEeccccchhccCCCCHHHHHHHHhhhc---C
Confidence 232322 33444433222 122223343 355667899988877776665433221111 123344444444322 2
Q ss_pred hHHHHHHHcCCC-cceeeccccccCcccccccCcCCCcEEEeccCCCCCCCCCccchhhhhhHHHHHHHHHHHHHhccCC
Q 021278 158 AQVKAVIEKTPL-DSIISSRLQYRQPQEVLWGNISRGSVCVAGDALHPMTPDIGQGGCAALEDGIVLARCINEALKTKQG 236 (315)
Q Consensus 158 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~v~LiGDAAh~~~P~~G~G~~~al~da~~La~~l~~~~~~~~~ 236 (315)
+.....+..... ..+...++. ...+++|+.|||+|||||||.++|++|||+|+||+||..|+++|..++.+
T Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~grv~LiGDAAH~~~P~~GqG~n~ai~Da~~La~~L~~~~~~--- 325 (388)
T PRK07045 254 DESADAMAAIGAGTAFPLIPLG-----RMNLDRYHKRNVVLLGDAAHSIHPITGQGMNLAIEDAGELGACLDLHLSG--- 325 (388)
T ss_pred ccchHHHhccCcccccceeecC-----ccccccccCCCEEEEEccccccCCCccccHHHHHHHHHHHHHHHHhhcCC---
Confidence 333333332211 111112222 12345789999999999999999999999999999999999999886553
Q ss_pred CCCCchhhhhHHHHHHHHHHHHhhhhhHHHHHHHHHHhhhhhccCchHHHHHHHHHHH
Q 021278 237 VGEEDEEEFNKRVEMGLKRYAKERRWRCFELISIAYLVGSIQQSDGKILNFLRDKILA 294 (315)
Q Consensus 237 ~~~~~~~~s~~~~~~~l~~Y~~~r~~~~~~~~~~s~~~~~~~~~~~~~~~~~r~~~l~ 294 (315)
....+++|+.|+++|+++...++..++.+...+++..+....+|.+++.
T Consensus 326 ---------~~~~~~~L~~Ye~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 374 (388)
T PRK07045 326 ---------QIALADALERFERIRRPVNEAVISYGHALATTYHDRAALVANFRSQLQT 374 (388)
T ss_pred ---------chhHHHHHHHHHHHhhhHHHHHHhhhHHHhhhcccchhHHHHHHhhhhc
Confidence 2356889999999999999999999999999999999999888877664
No 26
>TIGR01984 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase. This model represents the FAD-dependent monoxygenase responsible for the second hydroxylation step in the aerobic ubiquinone bioynthetic pathway. The scope of this model is limited to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyzes the final hydroxylation step. The enzyme has also been named VisB due to a mutant VISible light sensitive phenotype.
Probab=100.00 E-value=1.4e-32 Score=249.28 Aligned_cols=265 Identities=18% Similarity=0.165 Sum_probs=191.8
Q ss_pred ceeeeHHHHHHHHHhhCC---CCcEEecceEEEEEeeCCeeEEEecCCCEEeecEEEecCCCchhhhhhhCCCCCc-ccc
Q 021278 8 MRCVRRKLLLETLAKELP---SGTIRYSSQVVSIEESGHFKLLHLADGTILKTKVLIGCDGVNSIVAKWLGFKNPA-FVG 83 (315)
Q Consensus 8 ~~~i~R~~L~~~L~~~~~---~~~i~~~~~v~~~~~~~~~~~v~~~~g~~~~ad~vVgADG~~S~vr~~l~~~~~~-~~~ 83 (315)
.+.++|..|.+.|.+++. +++++++++|++++.++++++|++++|++++||+||+|||.+|.+|+.++++... ..+
T Consensus 99 ~~~i~r~~l~~~L~~~~~~~~gv~~~~~~~v~~i~~~~~~~~v~~~~g~~~~ad~vV~AdG~~S~vr~~l~~~~~~~~~~ 178 (382)
T TIGR01984 99 GYVVELADLGQALLSRLALLTNIQLYCPARYKEIIRNQDYVRVTLDNGQQLRAKLLIAADGANSKVRELLSIPTEEHDYN 178 (382)
T ss_pred EEEEEcHHHHHHHHHHHHhCCCcEEEcCCeEEEEEEcCCeEEEEECCCCEEEeeEEEEecCCChHHHHHcCCCCcccccC
Confidence 478999999999999763 6899999999999988888999999999999999999999999999999866333 344
Q ss_pred ceEEEeeeecCCCCCCCCceEEEecCCeEEEEEecCCC-eEEEEEEeeCCCCCcccccChHHHHHHHHHHhcCCChHHHH
Q 021278 84 RSAIRGYSDFKGSHGFEPNFLQFFGKGLRSGFIPCDDQ-TIYWFFTWTSSSQDKELEDHSAELKQFVLGKLHDLPAQVKA 162 (315)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (315)
...+...+....+.. .....++..+..+.++|.+++ ...+.+....+........+.+++.+.+.+.+. +.+..
T Consensus 179 ~~~~~~~~~~~~~~~--~~~~~~~~~~g~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~ 253 (382)
T TIGR01984 179 QTALIANIRHEQPHQ--GCAFERFTPHGPLALLPLKDNYRSSLVWCLPSKQADTIANLPDAEFLAELQQAFG---WRLGK 253 (382)
T ss_pred CEEEEEEEEecCCCC--CEEEEeeCCCCCeEECcCCCCCCEEEEEECCHHHHHHHHcCCHHHHHHHHHHHHh---hhccC
Confidence 566666555433221 222233455556778999888 443333322111101112344556666665442 11111
Q ss_pred HHHcCCCcceeeccccccCcccccccCcCCCcEEEeccCCCCCCCCCccchhhhhhHHHHHHHHHHHHHhccCCCCCCch
Q 021278 163 VIEKTPLDSIISSRLQYRQPQEVLWGNISRGSVCVAGDALHPMTPDIGQGGCAALEDGIVLARCINEALKTKQGVGEEDE 242 (315)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~LiGDAAh~~~P~~G~G~~~al~da~~La~~l~~~~~~~~~~~~~~~ 242 (315)
+.. ......+++.. ...++|..+||+|||||||+++|++|||+|+||+||..|+++|..+...
T Consensus 254 ~~~---~~~~~~~~~~~-----~~~~~~~~~rv~LvGDAAh~~~P~~GqG~~~al~Da~~La~~L~~~~~~--------- 316 (382)
T TIGR01984 254 ITQ---VGERKTYPLKL-----RIAETHVHPRVVLIGNAAQTLHPIAGQGFNLGLRDVETLAEVLIDARID--------- 316 (382)
T ss_pred eEE---cCCccEeecch-----hhhhheecCCEEEEeecccccCCccccchhhhHHHHHHHHHHHHHhccC---------
Confidence 111 11222233322 2345789999999999999999999999999999999999999876422
Q ss_pred hhhhHHHHHHHHHHHHhhhhhHHHHHHHHHHhhhhhccCchHHHHHHHHHHHHHHH
Q 021278 243 EEFNKRVEMGLKRYAKERRWRCFELISIAYLVGSIQQSDGKILNFLRDKILASFLV 298 (315)
Q Consensus 243 ~~s~~~~~~~l~~Y~~~r~~~~~~~~~~s~~~~~~~~~~~~~~~~~r~~~l~~~~~ 298 (315)
...+++|+.|+++|+++....+..+..+..++..+++....+|+.+++.+..
T Consensus 317 ----~~~~~~l~~Y~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ 368 (382)
T TIGR01984 317 ----LGTYALLQEYLRRRQFDQFITIGLTDGLNRLFSNHIPLLRALRNLGLLALEN 368 (382)
T ss_pred ----ccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHhc
Confidence 1357899999999999999999999999999999998899999999887654
No 27
>TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family. This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4, ) and UbiF (which acts at position 5). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) maki
Probab=100.00 E-value=4.1e-32 Score=246.52 Aligned_cols=268 Identities=21% Similarity=0.239 Sum_probs=194.1
Q ss_pred cceeeeHHHHHHHHHhhCC---CCcEEecceEEEEEeeCCeeEEEecCCCEEeecEEEecCCCchhhhhhhCCCCCc-cc
Q 021278 7 EMRCVRRKLLLETLAKELP---SGTIRYSSQVVSIEESGHFKLLHLADGTILKTKVLIGCDGVNSIVAKWLGFKNPA-FV 82 (315)
Q Consensus 7 ~~~~i~R~~L~~~L~~~~~---~~~i~~~~~v~~~~~~~~~~~v~~~~g~~~~ad~vVgADG~~S~vr~~l~~~~~~-~~ 82 (315)
..+.++|..|.+.|++.+. +++|+++++|++++.+++++.|++++|+++++|+||+|||.+|.+|+.++++... ..
T Consensus 99 ~~~~i~r~~l~~~L~~~~~~~~~~~v~~~~~v~~i~~~~~~~~v~~~~g~~~~~~~vi~adG~~S~vr~~l~~~~~~~~~ 178 (385)
T TIGR01988 99 LGYVVENRVLQQALWERLQEYPNVTLLCPARVVELPRHSDHVELTLDDGQQLRARLLVGADGANSKVRQLAGIPTTGWDY 178 (385)
T ss_pred cEEEEEcHHHHHHHHHHHHhCCCcEEecCCeEEEEEecCCeeEEEECCCCEEEeeEEEEeCCCCCHHHHHcCCCcccccc
Confidence 3578999999999999773 3899999999999988888999999999999999999999999999999765332 22
Q ss_pred cceEEEeeeecCCCCCCCCceEEEecCCeEEEEEecCCCeEEEEEEeeCCCCCcccccChHHHHHHHHHHhcCCChHHHH
Q 021278 83 GRSAIRGYSDFKGSHGFEPNFLQFFGKGLRSGFIPCDDQTIYWFFTWTSSSQDKELEDHSAELKQFVLGKLHDLPAQVKA 162 (315)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (315)
+...+.+.+..+... ......++.+++.++++|.+++...+.+.............+.+++.+.+.+.+..+...
T Consensus 179 ~~~~~~~~~~~~~~~--~~~~~~~~~~~g~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 253 (385)
T TIGR01988 179 GQSAVVANVKHERPH--QGTAWERFTPTGPLALLPLPDNRSSLVWTLPPEEAERLLALSDEEFLAELQRAFGSRLGA--- 253 (385)
T ss_pred CCeEEEEEEEecCCC--CCEEEEEecCCCCEEEeECCCCCeEEEEECCHHHHHHHHcCCHHHHHHHHHHHHhhhcCc---
Confidence 344444444433222 122223444556677999999876554443221111112234566667776655433221
Q ss_pred HHHcCCCcceeeccccccCcccccccCcCCCcEEEeccCCCCCCCCCccchhhhhhHHHHHHHHHHHHHhccCCCCCCch
Q 021278 163 VIEKTPLDSIISSRLQYRQPQEVLWGNISRGSVCVAGDALHPMTPDIGQGGCAALEDGIVLARCINEALKTKQGVGEEDE 242 (315)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~LiGDAAh~~~P~~G~G~~~al~da~~La~~l~~~~~~~~~~~~~~~ 242 (315)
+ .. ......+++.. ...++|..+||+|||||||.++|++|||+|+||+||..|++.|..++... .
T Consensus 254 ~-~~--~~~~~~~~~~~-----~~~~~~~~~~v~LiGDAah~~~P~~G~G~~~Ai~da~~La~~L~~~~~~~----~--- 318 (385)
T TIGR01988 254 I-TL--VGERHAFPLSL-----THAKRYVAPRLALIGDAAHTIHPLAGQGLNLGLRDVAALAEVLEDARRRG----E--- 318 (385)
T ss_pred e-Ee--ccCcceeechh-----hhhhheecCceEEEecccccCCccccchhhhhHHHHHHHHHHHHHHHhcC----C---
Confidence 1 10 11222333322 12346889999999999999999999999999999999999999876531 0
Q ss_pred hhhhHHHHHHHHHHHHhhhhhHHHHHHHHHHhhhhhccCchHHHHHHHHHHHHHH
Q 021278 243 EEFNKRVEMGLKRYAKERRWRCFELISIAYLVGSIQQSDGKILNFLRDKILASFL 297 (315)
Q Consensus 243 ~~s~~~~~~~l~~Y~~~r~~~~~~~~~~s~~~~~~~~~~~~~~~~~r~~~l~~~~ 297 (315)
....+.+|+.|+++|++++...+..++.+..++..+++....+|+.+++.+.
T Consensus 319 ---~~~~~~~l~~y~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~ 370 (385)
T TIGR01988 319 ---DIGSPRVLQRYERRRRFDNAAMLGATDGLNRLFSNDFPPLRLLRNLGLRLLN 370 (385)
T ss_pred ---CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHh
Confidence 0124789999999999999999999999999999999899999999888654
No 28
>PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=100.00 E-value=3.2e-32 Score=247.47 Aligned_cols=268 Identities=18% Similarity=0.144 Sum_probs=191.4
Q ss_pred ceeeeHHHHHHHHHhhCCC--CcEEecceEEEEEeeCCeeEEEecCCCEEeecEEEecCCCchhhhhhhCCCCC-ccccc
Q 021278 8 MRCVRRKLLLETLAKELPS--GTIRYSSQVVSIEESGHFKLLHLADGTILKTKVLIGCDGVNSIVAKWLGFKNP-AFVGR 84 (315)
Q Consensus 8 ~~~i~R~~L~~~L~~~~~~--~~i~~~~~v~~~~~~~~~~~v~~~~g~~~~ad~vVgADG~~S~vr~~l~~~~~-~~~~~ 84 (315)
.+.++|..|.+.|.+++.. ...+++++|++++.++++++|++++|++++||+||+|||.+|.+|+.+++... ..+++
T Consensus 105 g~~i~~~~l~~~L~~~~~~~~~~~~~~~~v~~i~~~~~~~~v~~~~g~~~~a~~vI~AdG~~S~vr~~~g~~~~~~~~~~ 184 (388)
T PRK07494 105 GYNIPNWLLNRALEARVAELPNITRFGDEAESVRPREDEVTVTLADGTTLSARLVVGADGRNSPVREAAGIGVRTWSYPQ 184 (388)
T ss_pred EEEeEhHHHHHHHHHHHhcCCCcEEECCeeEEEEEcCCeEEEEECCCCEEEEeEEEEecCCCchhHHhcCCCceecCCCC
Confidence 4689999999999997632 23388999999999888899999999999999999999999999999987743 23455
Q ss_pred eEEEeeeecCCCCCCCCceEEEecCCeEEEEEecCCCeEEEEEEeeCCCCCcccccChHHHHHHHHHHhcCCChHHHHHH
Q 021278 85 SAIRGYSDFKGSHGFEPNFLQFFGKGLRSGFIPCDDQTIYWFFTWTSSSQDKELEDHSAELKQFVLGKLHDLPAQVKAVI 164 (315)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (315)
.++.+.+..+.++ ......++...+.+.++|++++...++.....+........+.+++.+.+.+.+.. .+
T Consensus 185 ~~~~~~v~~~~~~--~~~~~~~~~~~g~~~~~Pl~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~l 255 (388)
T PRK07494 185 KALVLNFTHSRPH--QNVSTEFHTEGGPFTQVPLPGRRSSLVWVVRPAEAERLLALSDAALSAAIEERMQS-------ML 255 (388)
T ss_pred EEEEEEEeccCCC--CCEEEEEeCCCCcEEEEECCCCcEEEEEECCHHHHHHHHcCCHHHHHHHHHHHHhh-------hc
Confidence 5665555443222 22222334455567789998776433322211111111233455665655554332 22
Q ss_pred HcCC-CcceeeccccccCcccccccCcCCCcEEEeccCCCCCCCCCccchhhhhhHHHHHHHHHHHHHhccCCCCCCchh
Q 021278 165 EKTP-LDSIISSRLQYRQPQEVLWGNISRGSVCVAGDALHPMTPDIGQGGCAALEDGIVLARCINEALKTKQGVGEEDEE 243 (315)
Q Consensus 165 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~v~LiGDAAh~~~P~~G~G~~~al~da~~La~~l~~~~~~~~~~~~~~~~ 243 (315)
.... ......+++.. ...++|..+||+|+|||||.++|++|||+|+||+||..|+++|......
T Consensus 256 ~~~~~~~~~~~~~l~~-----~~~~~~~~~rv~LiGDAAH~~~P~~GqG~n~~l~Da~~La~~L~~~~~~---------- 320 (388)
T PRK07494 256 GKLTLEPGRQAWPLSG-----QVAHRFAAGRTALVGEAAHVFPPIGAQGLNLGLRDVATLVEIVEDRPED---------- 320 (388)
T ss_pred CCeEEccCCcEeechH-----HHHHhhccCceEEEEhhhhcCCchhhcccchhHHHHHHHHHHHHhcCCC----------
Confidence 1111 11222344432 2235789999999999999999999999999999999999999873322
Q ss_pred hhhHHHHHHHHHHHHhhhhhHHHHHHHHHHhhhhhccCchHHHHHHHHHHHHHHHhhhc
Q 021278 244 EFNKRVEMGLKRYAKERRWRCFELISIAYLVGSIQQSDGKILNFLRDKILASFLVGLLL 302 (315)
Q Consensus 244 ~s~~~~~~~l~~Y~~~r~~~~~~~~~~s~~~~~~~~~~~~~~~~~r~~~l~~~~~~~~~ 302 (315)
....++|+.|+++|++++...+..+..+...+....+....+|+.+|..+...+.+
T Consensus 321 ---~~~~~~L~~Y~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~l~~~~~~~~~ 376 (388)
T PRK07494 321 ---PGSAAVLAAYDRARRPDILSRTASVDLLNRSLLSDFLPVQDLRAAGLHLLYSFGPL 376 (388)
T ss_pred ---cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHhhCHHH
Confidence 24678999999999999999999999999999999999999999999865544433
No 29
>PTZ00367 squalene epoxidase; Provisional
Probab=100.00 E-value=4.9e-31 Score=246.55 Aligned_cols=288 Identities=18% Similarity=0.152 Sum_probs=195.9
Q ss_pred ccceeeeHHHHHHHHHhhC-----CCCcEEecceEEEEEeeCC-------eeEEEecC----------------------
Q 021278 6 HEMRCVRRKLLLETLAKEL-----PSGTIRYSSQVVSIEESGH-------FKLLHLAD---------------------- 51 (315)
Q Consensus 6 ~~~~~i~R~~L~~~L~~~~-----~~~~i~~~~~v~~~~~~~~-------~~~v~~~~---------------------- 51 (315)
...+.++|..|.+.|.+++ +++++.. .+|+++..+++ +++++..+
T Consensus 123 ~~g~~~~rg~~~~~Lr~~a~~~~~~~V~v~~-~~v~~l~~~~~~~~~~v~gV~~~~~~~~~~~~~~f~~~~~~~~~~~~~ 201 (567)
T PTZ00367 123 ASGVSFHFGDFVQNLRSHVFHNCQDNVTMLE-GTVNSLLEEGPGFSERAYGVEYTEAEKYDVPENPFREDPPSANPSATT 201 (567)
T ss_pred CceeEeEHHHHHHHHHHHHHhhcCCCcEEEE-eEEEEeccccCccCCeeEEEEEecCCcccccccccccccccccccccc
Confidence 3456788999999998865 5688865 57888755432 35555554
Q ss_pred -CCEEeecEEEecCCCchhhhhhhCCCCCccccceEEEeeeecCCCCCCCCceEEEecCCeEEEEEecCCCeEEEEEEee
Q 021278 52 -GTILKTKVLIGCDGVNSIVAKWLGFKNPAFVGRSAIRGYSDFKGSHGFEPNFLQFFGKGLRSGFIPCDDQTIYWFFTWT 130 (315)
Q Consensus 52 -g~~~~ad~vVgADG~~S~vr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~ 130 (315)
+++++||+||||||.+|.+|+.++...+.+.....+.+.+......+.+.....+++++..++++|++++..++.+.+.
T Consensus 202 ~g~~~~AdLvVgADG~~S~vR~~l~~~~~~~~~~s~~~g~~~~~~~lp~~~~~~v~~g~~gpi~~yPl~~~~~r~lv~~~ 281 (567)
T PTZ00367 202 VRKVATAPLVVMCDGGMSKFKSRYQHYTPASENHSHFVGLVLKNVRLPKEQHGTVFLGKTGPILSYRLDDNELRVLVDYN 281 (567)
T ss_pred cceEEEeCEEEECCCcchHHHHHccCCCCCcCcceEEEEEEEecccCCCCCeeEEEEcCCceEEEEEcCCCeEEEEEEec
Confidence 5689999999999999999999976544443444444433222222223445667888899999999999887776654
Q ss_pred CCCCCcccccChHHHHHHHHHHhc-CCChHHHHHH-HcCC-CcceeeccccccCcccccccCcCCCcEEEeccCCCCCCC
Q 021278 131 SSSQDKELEDHSAELKQFVLGKLH-DLPAQVKAVI-EKTP-LDSIISSRLQYRQPQEVLWGNISRGSVCVAGDALHPMTP 207 (315)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~v~LiGDAAh~~~P 207 (315)
.+..+ +.++..+.+.+.+. .+++.+.+.+ .... ...+...+....++ ..|.++|++|||||||+++|
T Consensus 282 ~~~~p-----~~~~~~~~l~~~~~p~l~~~l~~~f~~~l~~~~~l~~~p~~~~p~-----~~~~~~gvvLIGDAAH~mhP 351 (567)
T PTZ00367 282 KPTLP-----SLEEQSEWLIEDVAPHLPENMRESFIRASKDTKRIRSMPNARYPP-----AFPSIKGYVGIGDHANQRHP 351 (567)
T ss_pred CCcCC-----ChHHHHHHHHHhhcccCcHHHHHHHHHhhcccCCeEEeeHhhCCC-----ccCCCCCEEEEEcccCCCCC
Confidence 32211 11223344444332 3455555533 2211 12333344444332 24678999999999999999
Q ss_pred CCccchhhhhhHHHHHHHHHHHHHhccCCCCCCchhhhhHHHHHHHH----HHHHhhhhhHHHHHHHHHHhhhhhccCch
Q 021278 208 DIGQGGCAALEDGIVLARCINEALKTKQGVGEEDEEEFNKRVEMGLK----RYAKERRWRCFELISIAYLVGSIQQSDGK 283 (315)
Q Consensus 208 ~~G~G~~~al~da~~La~~l~~~~~~~~~~~~~~~~~s~~~~~~~l~----~Y~~~r~~~~~~~~~~s~~~~~~~~~~~~ 283 (315)
++|||+|+||+||..|++.|....+.. + .+......++++|+ .|++.|+++...++..+..+..+|..
T Consensus 352 ~~GQGmn~AleDA~~La~~L~~~~~~~---~--~d~~d~~~v~~aL~~~~~~Y~~~Rk~~a~~i~~ls~aL~~lf~~--- 423 (567)
T PTZ00367 352 LTGGGMTCCFSDCIRLAKSLTGIKSLR---S--IDQNEMAEIEDAIQAAILSYARNRKTHASTINILSWALYSVFSS--- 423 (567)
T ss_pred cccccHHHHHHHHHHHHHHHHhhhccc---C--CCchhHHHHHHHHHHhHHHHHHHhhhhHHHHHHHHHHHHHHhCh---
Confidence 999999999999999999997643211 0 01111224566676 99999999999999999999999988
Q ss_pred HHHHHHHHHHHHHHHh--hhcccccccCCCCcC
Q 021278 284 ILNFLRDKILASFLVG--LLLKKADFDCGNLTS 314 (315)
Q Consensus 284 ~~~~~r~~~l~~~~~~--~~~~~~~~~~~~~~~ 314 (315)
..+|+.+++.+... .+........|..|+
T Consensus 424 --~~lr~~~~~y~~~gg~~~~~p~~ll~g~~~~ 454 (567)
T PTZ00367 424 --PALRDACLDYFSLGGECVTGPMSLLSGLDPS 454 (567)
T ss_pred --HHHHHHHHHHHhcCCccccccHHHHcCCCCC
Confidence 57999999988766 666666666666664
No 30
>PRK08020 ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed
Probab=100.00 E-value=1.2e-31 Score=243.94 Aligned_cols=270 Identities=23% Similarity=0.211 Sum_probs=188.3
Q ss_pred ceeeeHHHHHHHHHhhC---CCCcEEecceEEEEEeeCCeeEEEecCCCEEeecEEEecCCCchhhhhhhCCCCCcc-cc
Q 021278 8 MRCVRRKLLLETLAKEL---PSGTIRYSSQVVSIEESGHFKLLHLADGTILKTKVLIGCDGVNSIVAKWLGFKNPAF-VG 83 (315)
Q Consensus 8 ~~~i~R~~L~~~L~~~~---~~~~i~~~~~v~~~~~~~~~~~v~~~~g~~~~ad~vVgADG~~S~vr~~l~~~~~~~-~~ 83 (315)
.+.++|..|.+.|.+++ ++++++++++|++++.+++++.|.+.+|++++||+||+|||.+|.+|+.+++..... +.
T Consensus 106 g~~i~r~~l~~~L~~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g~~~~a~~vI~AdG~~S~vR~~~~~~~~~~~y~ 185 (391)
T PRK08020 106 GYMVENRVLQLALWQALEAHPNVTLRCPASLQALQRDDDGWELTLADGEEIQAKLVIGADGANSQVRQMAGIGVHGWQYR 185 (391)
T ss_pred EEEEEcHHHHHHHHHHHHcCCCcEEEcCCeeEEEEEcCCeEEEEECCCCEEEeCEEEEeCCCCchhHHHcCCCccccCCC
Confidence 46899999999998865 468999999999999888888899999999999999999999999999997653321 23
Q ss_pred ceEEEeeeecCCCCCCCCceEEEecCCeEEEEEecCCCeEEEEEEeeCCCCC--cccccChHHHHHHHHHHhcCCChHHH
Q 021278 84 RSAIRGYSDFKGSHGFEPNFLQFFGKGLRSGFIPCDDQTIYWFFTWTSSSQD--KELEDHSAELKQFVLGKLHDLPAQVK 161 (315)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (315)
..++.+.+..+... ....+..++..+. ..++|..++...+ .+...... .....+.+++.+.+.+.+. +.+.
T Consensus 186 ~~~~~~~~~~~~~~-~~~~~~~~~~~g~-~~~~p~~~~~~~~--v~~~~~~~~~~~~~~~~~~~~~~l~~~~~---~~~~ 258 (391)
T PRK08020 186 QSCMLISVKCENPP-GDSTWQQFTPSGP-RAFLPLFDNWASL--VWYDSPARIRQLQAMSMAQLQQEIAAHFP---ARLG 258 (391)
T ss_pred ceEEEEEEEecCCC-CCEEEEEEcCCCC-EEEeECCCCcEEE--EEECCHHHHHHHHCCCHHHHHHHHHHHhh---hhcc
Confidence 44445555444322 1223444444443 4478987664322 23222111 1112234445444444332 2111
Q ss_pred HHHHcCCCcceeeccccccCcccccccCcCCCcEEEeccCCCCCCCCCccchhhhhhHHHHHHHHHHHHHhccCCCCCCc
Q 021278 162 AVIEKTPLDSIISSRLQYRQPQEVLWGNISRGSVCVAGDALHPMTPDIGQGGCAALEDGIVLARCINEALKTKQGVGEED 241 (315)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~LiGDAAh~~~P~~G~G~~~al~da~~La~~l~~~~~~~~~~~~~~ 241 (315)
.+.. . ....+++.. ..+++|..+|++|+|||||.++|+.|||+|+||+||..|+++|.+..... .
T Consensus 259 ~~~~-~---~~~~~pl~~-----~~~~~~~~~rv~LvGDAAH~~~P~~GqG~n~al~Da~~La~~L~~~~~~~----~-- 323 (391)
T PRK08020 259 AVTP-V---AAGAFPLTR-----RHALQYVQPGLALVGDAAHTINPLAGQGVNLGYRDVDALLDVLVNARSYG----E-- 323 (391)
T ss_pred ceEe-c---cccEeecce-----eehhhhccCcEEEEechhhccCCcccchhHHHHHHHHHHHHHHHHHHhcC----C--
Confidence 1100 0 111233322 22457899999999999999999999999999999999999998865431 0
Q ss_pred hhhhhHHHHHHHHHHHHhhhhhHHHHHHHHHHhhhhhccCchHHHHHHHHHHHHHHHhhhcc
Q 021278 242 EEEFNKRVEMGLKRYAKERRWRCFELISIAYLVGSIQQSDGKILNFLRDKILASFLVGLLLK 303 (315)
Q Consensus 242 ~~~s~~~~~~~l~~Y~~~r~~~~~~~~~~s~~~~~~~~~~~~~~~~~r~~~l~~~~~~~~~~ 303 (315)
......+|+.|+++|+++....+..+..+..+|+++.++...+|++.|..+-....+|
T Consensus 324 ----~~~~~~~L~~Y~~~R~~~~~~~~~~~~~l~~~~~~~~~~~~~~R~~~l~~~~~~~~~k 381 (391)
T PRK08020 324 ----AWASEAVLKRYQRRRMADNLLMQSGMDLFYAGFSNNLPPLRFARNLGLMAAQRAGVLK 381 (391)
T ss_pred ----CcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHhcCHHHH
Confidence 0135689999999999999999999999999999999999999999998655444433
No 31
>PRK08243 4-hydroxybenzoate 3-monooxygenase; Validated
Probab=100.00 E-value=1.7e-31 Score=242.80 Aligned_cols=271 Identities=14% Similarity=0.124 Sum_probs=180.0
Q ss_pred ccceeeeHHHHHHHHHhhC--CCCcEEecceEEEEEe-eCCeeEEEe-cCCC--EEeecEEEecCCCchhhhhhhCCCC-
Q 021278 6 HEMRCVRRKLLLETLAKEL--PSGTIRYSSQVVSIEE-SGHFKLLHL-ADGT--ILKTKVLIGCDGVNSIVAKWLGFKN- 78 (315)
Q Consensus 6 ~~~~~i~R~~L~~~L~~~~--~~~~i~~~~~v~~~~~-~~~~~~v~~-~~g~--~~~ad~vVgADG~~S~vr~~l~~~~- 78 (315)
.....++|..|.+.|++.+ .++++++++++++++. +++.+.|++ .+|+ +++||+||||||.+|.||+.++...
T Consensus 95 ~~~~~~~~~~l~~~Ll~~a~~~gv~v~~~~~v~~i~~~~~~~~~V~~~~~G~~~~i~ad~vVgADG~~S~vR~~~~~~~~ 174 (392)
T PRK08243 95 RAVTVYGQTEVTRDLMAARLAAGGPIRFEASDVALHDFDSDRPYVTYEKDGEEHRLDCDFIAGCDGFHGVSRASIPAGAL 174 (392)
T ss_pred ceEEEeCcHHHHHHHHHHHHhCCCeEEEeeeEEEEEecCCCceEEEEEcCCeEEEEEeCEEEECCCCCCchhhhcCcchh
Confidence 3445677889888888765 4589999999999987 566777887 4664 7899999999999999999996643
Q ss_pred Cccccc--eEEEeeeecCCCCCCCCceEEEecCCeEEEEEecCCCeEEEEEEeeCCCCCcccccChHHHHHHHHHHhcCC
Q 021278 79 PAFVGR--SAIRGYSDFKGSHGFEPNFLQFFGKGLRSGFIPCDDQTIYWFFTWTSSSQDKELEDHSAELKQFVLGKLHDL 156 (315)
Q Consensus 79 ~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (315)
..+... ..+.+.+.... +......+......+..++|.+++...+++.+...... .....+.+.+.+.+.+.+.
T Consensus 175 ~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~ 250 (392)
T PRK08243 175 RTFERVYPFGWLGILAEAP--PVSDELIYANHERGFALCSMRSPTRSRYYLQCPLDDKV--EDWSDERFWDELRRRLPPE 250 (392)
T ss_pred hceecccCceEEEEeCCCC--CCCCceEEeeCCCceEEEecCCCCcEEEEEEecCCCCc--ccCChhHHHHHHHHhcCcc
Confidence 222222 23333321111 11122222223344444444445544444444322211 1123455566777666542
Q ss_pred ChHHHHHHHcCCCcceeeccccccCcccccccCcCCCcEEEeccCCCCCCCCCccchhhhhhHHHHHHHHHHHHHhccCC
Q 021278 157 PAQVKAVIEKTPLDSIISSRLQYRQPQEVLWGNISRGSVCVAGDALHPMTPDIGQGGCAALEDGIVLARCINEALKTKQG 236 (315)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~LiGDAAh~~~P~~G~G~~~al~da~~La~~l~~~~~~~~~ 236 (315)
.. ..+. ..+......+++. ...+++|..|||+|||||||.++|++|||+|+||+||..|+++|..++.+
T Consensus 251 ~~--~~~~-~~~~~~~~~~~~~-----~~~~~~~~~grvvLvGDAAH~~~P~~GqG~n~ai~Da~~La~~L~~~~~~--- 319 (392)
T PRK08243 251 DA--ERLV-TGPSIEKSIAPLR-----SFVAEPMQYGRLFLAGDAAHIVPPTGAKGLNLAASDVRYLARALVEFYRE--- 319 (392)
T ss_pred cc--cccc-cCccccccceeee-----eceeccceeCCEEEEecccccCCCCcCcchhHHHHHHHHHHHHHHHHhcc---
Confidence 10 0011 0000001111221 22345788999999999999999999999999999999999999887654
Q ss_pred CCCCchhhhhHHHHHHHHHHHHhhhhhHHHHHHHHHHhhhhhcc---CchHHHHHHHHHHHHHHHhhhc
Q 021278 237 VGEEDEEEFNKRVEMGLKRYAKERRWRCFELISIAYLVGSIQQS---DGKILNFLRDKILASFLVGLLL 302 (315)
Q Consensus 237 ~~~~~~~~s~~~~~~~l~~Y~~~r~~~~~~~~~~s~~~~~~~~~---~~~~~~~~r~~~l~~~~~~~~~ 302 (315)
..+++|+.|+++|++++...+..+..+..+++. ..++...+|+..|+.++..+..
T Consensus 320 -----------~~~~~L~~Ye~~r~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 377 (392)
T PRK08243 320 -----------GDTALLDAYSATALRRVWKAERFSWWMTSMLHRFPDDDPFDQRIQLAELDYLTSSRAA 377 (392)
T ss_pred -----------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHHhcCHHH
Confidence 357899999999999999999999999999875 4557788899999988776653
No 32
>PRK06185 hypothetical protein; Provisional
Probab=100.00 E-value=2.2e-31 Score=243.52 Aligned_cols=266 Identities=17% Similarity=0.182 Sum_probs=185.7
Q ss_pred ceeeeHHHHHHHHHhhC---CCCcEEecceEEEEEeeCCee---EEEecCCC-EEeecEEEecCCCchhhhhhhCCCCCc
Q 021278 8 MRCVRRKLLLETLAKEL---PSGTIRYSSQVVSIEESGHFK---LLHLADGT-ILKTKVLIGCDGVNSIVAKWLGFKNPA 80 (315)
Q Consensus 8 ~~~i~R~~L~~~L~~~~---~~~~i~~~~~v~~~~~~~~~~---~v~~~~g~-~~~ad~vVgADG~~S~vr~~l~~~~~~ 80 (315)
...++|..|.+.|.+++ ++++++++++|+++..+++++ .+...+|+ +++||+||+|||.+|.+|+.+|+..+.
T Consensus 102 ~~~v~~~~l~~~L~~~~~~~~~v~i~~~~~v~~~~~~~~~v~~v~~~~~~g~~~i~a~~vI~AdG~~S~vr~~~gi~~~~ 181 (407)
T PRK06185 102 IAMMPQWDFLDFLAEEASAYPNFTLRMGAEVTGLIEEGGRVTGVRARTPDGPGEIRADLVVGADGRHSRVRALAGLEVRE 181 (407)
T ss_pred EEEeehHHHHHHHHHHHhhCCCcEEEeCCEEEEEEEeCCEEEEEEEEcCCCcEEEEeCEEEECCCCchHHHHHcCCCccc
Confidence 45789999999998865 468999999999998887764 34445664 799999999999999999999886443
Q ss_pred c-ccceEEEeeeecCCCCCCCCceEEEecCCeEEEEEecCCCeEEEEEEeeCCCCCc--ccccChHHHHHHHHHHhcCCC
Q 021278 81 F-VGRSAIRGYSDFKGSHGFEPNFLQFFGKGLRSGFIPCDDQTIYWFFTWTSSSQDK--ELEDHSAELKQFVLGKLHDLP 157 (315)
Q Consensus 81 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~ 157 (315)
+ ++....+.. .+...........++.+++.+.++|.. +. |.+.+..+.... ....+.+++.+.+. ++.
T Consensus 182 ~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~g~~~llP~~-~~--~~i~~~~~~~~~~~~~~~~~~~~~~~~~----~~~ 252 (407)
T PRK06185 182 FGAPMDVLWFR--LPREPDDPESLMGRFGPGQGLIMIDRG-DY--WQCGYVIPKGGYAALRAAGLEAFRERVA----ELA 252 (407)
T ss_pred cCCCceeEEEe--cCCCCCCCcccceEecCCcEEEEEcCC-Ce--EEEEEEecCCCchhhhhhhHHHHHHHHH----HhC
Confidence 2 222333322 332222111223355666777799987 54 334443332211 12233444444444 333
Q ss_pred hHHHHHHHcC-CCcceeeccccccCcccccccCcCCCcEEEeccCCCCCCCCCccchhhhhhHHHHHHHHHHHHHhccCC
Q 021278 158 AQVKAVIEKT-PLDSIISSRLQYRQPQEVLWGNISRGSVCVAGDALHPMTPDIGQGGCAALEDGIVLARCINEALKTKQG 236 (315)
Q Consensus 158 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~v~LiGDAAh~~~P~~G~G~~~al~da~~La~~l~~~~~~~~~ 236 (315)
+.+...+... .......+++... .+++|.++|++|||||||.++|++|||+|+||+||..|++.|..++...
T Consensus 253 p~~~~~l~~~~~~~~~~~~~l~~~-----~~~~~~~~rv~LvGDAAh~~~P~~GqG~nlgl~Da~~La~~l~~~~~~~-- 325 (407)
T PRK06185 253 PELADRVAELKSWDDVKLLDVRVD-----RLRRWHRPGLLCIGDAAHAMSPVGGVGINLAIQDAVAAANILAEPLRRG-- 325 (407)
T ss_pred ccHHHHHhhcCCccccEEEEEecc-----ccccccCCCeEEEeccccccCcccccchhHHHHHHHHHHHHHHHHhccC--
Confidence 3333333322 1223334444322 2357899999999999999999999999999999999999999877651
Q ss_pred CCCCchhhhhHHHHHHHHHHHHhhhhhHHHHHHHHHHhhhhhccCc--hHHHHHHHHHHHHHHHh
Q 021278 237 VGEEDEEEFNKRVEMGLKRYAKERRWRCFELISIAYLVGSIQQSDG--KILNFLRDKILASFLVG 299 (315)
Q Consensus 237 ~~~~~~~~s~~~~~~~l~~Y~~~r~~~~~~~~~~s~~~~~~~~~~~--~~~~~~r~~~l~~~~~~ 299 (315)
+..+..|+.|+++|+++....+..+..+.++|.++. +....+|+..|..+-..
T Consensus 326 ----------~~~~~~L~~Y~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~l~~~~~~ 380 (407)
T PRK06185 326 ----------RVSDRDLAAVQRRREFPTRVTQALQRRIQRRLLAPALAGRGPLGPPLLLRLLNRL 380 (407)
T ss_pred ----------CccHHHHHHHHHHhhhHHHHHHHHHHHHHHhhccccccCccccCCchHHHHHHhC
Confidence 123489999999999999999999999999999888 88999999999854433
No 33
>PLN02985 squalene monooxygenase
Probab=100.00 E-value=1.2e-30 Score=242.84 Aligned_cols=285 Identities=14% Similarity=0.117 Sum_probs=195.9
Q ss_pred ceeeeHHHHHHHHHhhC---CCCcEEecceEEEEEeeCCe---eEEEecCCC--EEeecEEEecCCCchhhhhhhCCCCC
Q 021278 8 MRCVRRKLLLETLAKEL---PSGTIRYSSQVVSIEESGHF---KLLHLADGT--ILKTKVLIGCDGVNSIVAKWLGFKNP 79 (315)
Q Consensus 8 ~~~i~R~~L~~~L~~~~---~~~~i~~~~~v~~~~~~~~~---~~v~~~~g~--~~~ad~vVgADG~~S~vr~~l~~~~~ 79 (315)
.+.++|..|.+.|++++ +++++..+ +++++..+++. +++..++|+ +++||+||||||.+|.+|+.++...+
T Consensus 141 g~~i~r~~l~~~L~~~a~~~~~V~i~~g-tvv~li~~~~~v~gV~~~~~dG~~~~~~AdLVVgADG~~S~vR~~l~~~~~ 219 (514)
T PLN02985 141 ARSFHNGRFVQRLRQKASSLPNVRLEEG-TVKSLIEEKGVIKGVTYKNSAGEETTALAPLTVVCDGCYSNLRRSLNDNNA 219 (514)
T ss_pred eeeeecHHHHHHHHHHHHhCCCeEEEee-eEEEEEEcCCEEEEEEEEcCCCCEEEEECCEEEECCCCchHHHHHhccCCC
Confidence 46899999999999876 45888876 56676655443 334445665 46799999999999999999976543
Q ss_pred c-cccceEEEeeeecCCCCCCCCceEEEecCCeEEEEEecCCCeEEEEEEeeCCCCCcccccChHHHHHHHHHHh-cCCC
Q 021278 80 A-FVGRSAIRGYSDFKGSHGFEPNFLQFFGKGLRSGFIPCDDQTIYWFFTWTSSSQDKELEDHSAELKQFVLGKL-HDLP 157 (315)
Q Consensus 80 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 157 (315)
. ++...++ +......+.+...+++++.+.++.++|+++++.++......+..+ +.+..+..+.+.+.. +.++
T Consensus 220 ~~~s~~~~~---~~~~~~~~~~~~~~~~~~~~~~~l~ypi~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~p~~p 293 (514)
T PLN02985 220 EVLSYQVGY---ISKNCRLEEPEKLHLIMSKPSFTMLYQISSTDVRCVFEVLPDNIP---SIANGEMSTFVKNTIAPQVP 293 (514)
T ss_pred cceeEeEEE---EEccccCCCCCcceEEcCCCceEEEEEeCCCeEEEEEEEeCCCCC---CcChhhHHHHHHhccccccC
Confidence 2 2222222 222222223444567778888899999999887666555433211 112334445544432 2445
Q ss_pred hHHHHHHHc--CCCcceeeccccccCcccccccCcCCCcEEEeccCCCCCCCCCccchhhhhhHHHHHHHHHHHHHhccC
Q 021278 158 AQVKAVIEK--TPLDSIISSRLQYRQPQEVLWGNISRGSVCVAGDALHPMTPDIGQGGCAALEDGIVLARCINEALKTKQ 235 (315)
Q Consensus 158 ~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~LiGDAAh~~~P~~G~G~~~al~da~~La~~l~~~~~~~~ 235 (315)
+.+.+.+.. .+...+...+....+ ...|.++|++|||||||+++|++|||||+|++||..|++.|.....-
T Consensus 294 ~~l~~~f~~~~~~~~~~~~~p~~~l~-----~~~~~~~~vvLiGDAaH~~~P~~GQGmn~AleDA~vLa~lL~~~~~~-- 366 (514)
T PLN02985 294 PKLRKIFLKGIDEGAHIKVVPTKRMS-----ATLSDKKGVIVLGDAFNMRHPAIASGMMVLLSDILILRRLLQPLSNL-- 366 (514)
T ss_pred HHHHHHHHhhcccccceeecCccccc-----ccccCCCCEEEEecccccCCCCccccHhHHHHHHHHHHHHhhhcccc--
Confidence 555554432 111123333332221 12456789999999999999999999999999999999999763210
Q ss_pred CCCCCchhhhhHHHHHHHHHHHHhhhhhHHHHHHHHHHhhhhhc-cCchHHHHHHHHHHHHHHHh--hhcccccccCCCC
Q 021278 236 GVGEEDEEEFNKRVEMGLKRYAKERRWRCFELISIAYLVGSIQQ-SDGKILNFLRDKILASFLVG--LLLKKADFDCGNL 312 (315)
Q Consensus 236 ~~~~~~~~~s~~~~~~~l~~Y~~~r~~~~~~~~~~s~~~~~~~~-~~~~~~~~~r~~~l~~~~~~--~~~~~~~~~~~~~ 312 (315)
.+.....++|+.|+++|++++..++..|+.+..+|. .++.....+|+.+|+.+... .+........|..
T Consensus 367 --------~~~~~~~~aL~~y~~~Rk~r~~~i~~la~al~~~f~a~~~~~~~~l~~~~f~y~~~g~~~~~~~~~ll~~~~ 438 (514)
T PLN02985 367 --------GNANKVSEVIKSFYDIRKPMSATVNTLGNAFSQVLVASTDEAKEAMRQGCYDYLCSGGFRTSGMMALLGGMN 438 (514)
T ss_pred --------cchhHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHcCCccccccHHHHcCCC
Confidence 012367899999999999999999999999999996 56777899999999887766 6666666666666
Q ss_pred cC
Q 021278 313 TS 314 (315)
Q Consensus 313 ~~ 314 (315)
|+
T Consensus 439 ~~ 440 (514)
T PLN02985 439 PR 440 (514)
T ss_pred CC
Confidence 64
No 34
>PRK06834 hypothetical protein; Provisional
Probab=100.00 E-value=4.6e-31 Score=244.90 Aligned_cols=256 Identities=18% Similarity=0.156 Sum_probs=185.8
Q ss_pred cceeeeHHHHHHHHHhhCC--CCcEEecceEEEEEeeCCeeEEEecCCCEEeecEEEecCCCchhhhhhhCCCCCccc-c
Q 021278 7 EMRCVRRKLLLETLAKELP--SGTIRYSSQVVSIEESGHFKLLHLADGTILKTKVLIGCDGVNSIVAKWLGFKNPAFV-G 83 (315)
Q Consensus 7 ~~~~i~R~~L~~~L~~~~~--~~~i~~~~~v~~~~~~~~~~~v~~~~g~~~~ad~vVgADG~~S~vr~~l~~~~~~~~-~ 83 (315)
..+.+.|..|.+.|.+.+. +++|+++++|++++++++++.|++.+|++++||+||+|||.+|.||+.+|+..+... .
T Consensus 93 ~~~~i~q~~le~~L~~~l~~~gv~i~~~~~v~~v~~~~~~v~v~~~~g~~i~a~~vVgADG~~S~vR~~lgi~~~g~~~~ 172 (488)
T PRK06834 93 YGLALWQNHIERILAEWVGELGVPIYRGREVTGFAQDDTGVDVELSDGRTLRAQYLVGCDGGRSLVRKAAGIDFPGWDPT 172 (488)
T ss_pred ccccccHHHHHHHHHHHHHhCCCEEEcCCEEEEEEEcCCeEEEEECCCCEEEeCEEEEecCCCCCcHhhcCCCCCCCCcc
Confidence 3467899999999998774 489999999999999988999999888899999999999999999999998765442 2
Q ss_pred ceEEEeeeecCCCCCCCCceEEEecCCeEEEEEecC-CCeEEEEEEeeCCCCCcccccChHHHHHHHHHHhc-CCChHHH
Q 021278 84 RSAIRGYSDFKGSHGFEPNFLQFFGKGLRSGFIPCD-DQTIYWFFTWTSSSQDKELEDHSAELKQFVLGKLH-DLPAQVK 161 (315)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 161 (315)
...+.+.+..+... .+..+....+...+.|.. ++..++. +..+........+.+++.+.+.+.+. ++..
T Consensus 173 ~~~~~~dv~~~~~~----~~~~~~~~~g~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~--- 243 (488)
T PRK06834 173 TSYLIAEVEMTEEP----EWGVHRDALGIHAFGRLEDEGPVRVM--VTEKQVGATGEPTLDDLREALIAVYGTDYGI--- 243 (488)
T ss_pred eEEEEEEEEecCCC----CcceeeCCCceEEEeccCCCCeEEEE--EecCCCCCCCCCCHHHHHHHHHHhhCCCCcc---
Confidence 33444444433221 122233444455567765 4543332 22222222224466777777776654 2211
Q ss_pred HHHHcCCCcceeeccccccCcccccccCcCCCcEEEeccCCCCCCCCCccchhhhhhHHHHHHHHHHHHHhccCCCCCCc
Q 021278 162 AVIEKTPLDSIISSRLQYRQPQEVLWGNISRGSVCVAGDALHPMTPDIGQGGCAALEDGIVLARCINEALKTKQGVGEED 241 (315)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~LiGDAAh~~~P~~G~G~~~al~da~~La~~l~~~~~~~~~~~~~~ 241 (315)
.....+..++. ....+++|..|||+|+|||||.++|++|||+|+||+||.+|+|.|+..+.+.
T Consensus 244 -----~~~~~~~~~~~-----~~r~a~~~~~gRV~LaGDAAH~~~P~gGQG~N~gi~DA~nLawkLa~vl~g~------- 306 (488)
T PRK06834 244 -----HSPTWISRFTD-----MARQAASYRDGRVLLAGDAAHVHSPVGGQGLNTGVQDAVNLGWKLAQVVKGT------- 306 (488)
T ss_pred -----ccceeEEeccc-----cceecccccCCcEEEEeeccccCCccccccccccHHHHHHHHHHHHHHHcCC-------
Confidence 01111122222 1233568999999999999999999999999999999999999999988763
Q ss_pred hhhhhHHHHHHHHHHHHhhhhhHHHHHHHHHHhhhhhccCchHHHHHHHHHHHH
Q 021278 242 EEEFNKRVEMGLKRYAKERRWRCFELISIAYLVGSIQQSDGKILNFLRDKILAS 295 (315)
Q Consensus 242 ~~~s~~~~~~~l~~Y~~~r~~~~~~~~~~s~~~~~~~~~~~~~~~~~r~~~l~~ 295 (315)
..+.+|+.|+++|++....++..+..+..++. +++....+|+..+..
T Consensus 307 ------~~~~lLd~Ye~eRrp~~~~~~~~t~~~~~~~~-~~~~~~~lR~~~~~~ 353 (488)
T PRK06834 307 ------SPESLLDTYHAERHPVAARVLRNTMAQVALLR-PDDRTEALRDIVAEL 353 (488)
T ss_pred ------CcHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-CChHHHHHHHHHHHH
Confidence 46789999999999999999999988887776 677789999988763
No 35
>PRK07608 ubiquinone biosynthesis hydroxylase family protein; Provisional
Probab=100.00 E-value=3.1e-31 Score=241.04 Aligned_cols=267 Identities=20% Similarity=0.190 Sum_probs=188.3
Q ss_pred ceeeeHHHHHHHHHhhCC---CCcEEecceEEEEEeeCCeeEEEecCCCEEeecEEEecCCCchhhhhhhCCCCCcc-cc
Q 021278 8 MRCVRRKLLLETLAKELP---SGTIRYSSQVVSIEESGHFKLLHLADGTILKTKVLIGCDGVNSIVAKWLGFKNPAF-VG 83 (315)
Q Consensus 8 ~~~i~R~~L~~~L~~~~~---~~~i~~~~~v~~~~~~~~~~~v~~~~g~~~~ad~vVgADG~~S~vr~~l~~~~~~~-~~ 83 (315)
.+.++|..|.+.|.+++. +++++ +++|++++.+++++.|++.+|.+++||+||+|||.+|.+|+.++...... ..
T Consensus 105 ~~~i~~~~l~~~L~~~~~~~~~v~~~-~~~v~~i~~~~~~~~v~~~~g~~~~a~~vI~adG~~S~vr~~~~~~~~~~~~~ 183 (388)
T PRK07608 105 AWIVESSLIERALWAALRFQPNLTWF-PARAQGLEVDPDAATLTLADGQVLRADLVVGADGAHSWVRSQAGIKAERRPYR 183 (388)
T ss_pred EEEEEhHHHHHHHHHHHHhCCCcEEE-cceeEEEEecCCeEEEEECCCCEEEeeEEEEeCCCCchHHHhcCCCccccccC
Confidence 467999999999998773 37777 99999999888888999999989999999999999999999998764322 22
Q ss_pred ceEEEeeeecCCCCCCCCceEEEecCCeEEEEEecCCCeEEEEEEeeCCCCCcccccChHHHHHHHHHHhcCCChHHHHH
Q 021278 84 RSAIRGYSDFKGSHGFEPNFLQFFGKGLRSGFIPCDDQTIYWFFTWTSSSQDKELEDHSAELKQFVLGKLHDLPAQVKAV 163 (315)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (315)
..++...+..+... ......++.++.+++++|.+++...+.+.............+++++.+.+...+.+. +..
T Consensus 184 ~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~- 257 (388)
T PRK07608 184 QTGVVANFKAERPH--RGTAYQWFRDDGILALLPLPDGHVSMVWSARTAHADELLALSPEALAARVERASGGR---LGR- 257 (388)
T ss_pred CEEEEEEEEecCCC--CCEEEEEecCCCCEEEeECCCCCeEEEEECCHHHHHHHHCCCHHHHHHHHHHHHHHh---cCC-
Confidence 33444444333221 222345567777888999999875443332211111112234555555555443211 111
Q ss_pred HHcCCCcceeeccccccCcccccccCcCCCcEEEeccCCCCCCCCCccchhhhhhHHHHHHHHHHHHHhccCCCCCCchh
Q 021278 164 IEKTPLDSIISSRLQYRQPQEVLWGNISRGSVCVAGDALHPMTPDIGQGGCAALEDGIVLARCINEALKTKQGVGEEDEE 243 (315)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~LiGDAAh~~~P~~G~G~~~al~da~~La~~l~~~~~~~~~~~~~~~~ 243 (315)
+... .....+++.. ...++|..+||+|||||||+++|++|||+|+||+||..|+++|.......
T Consensus 258 ~~~~--~~~~~~~~~~-----~~~~~~~~~rv~liGDAAh~~~P~~GqG~n~ai~da~~La~~L~~~~~~~--------- 321 (388)
T PRK07608 258 LECV--TPAAGFPLRL-----QRVDRLVAPRVALVGDAAHLIHPLAGQGMNLGLRDVAALADVLAGREPFR--------- 321 (388)
T ss_pred ceec--CCcceeecch-----hhhhhhhcCceEEEeccccccCCccccccchhHHHHHHHHHHHHHhhccC---------
Confidence 1110 0111222221 22357899999999999999999999999999999999999998754210
Q ss_pred hhhHHHHHHHHHHHHhhhhhHHHHHHHHHHhhhhhccCchHHHHHHHHHHHHHHHh
Q 021278 244 EFNKRVEMGLKRYAKERRWRCFELISIAYLVGSIQQSDGKILNFLRDKILASFLVG 299 (315)
Q Consensus 244 ~s~~~~~~~l~~Y~~~r~~~~~~~~~~s~~~~~~~~~~~~~~~~~r~~~l~~~~~~ 299 (315)
.....++|+.|+++|++++...+..++.+..+++.+++....+|+..++.+...
T Consensus 322 --~~~~~~~l~~Ye~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~ 375 (388)
T PRK07608 322 --DLGDLRLLRRYERARREDILALQVATDGLQRLFALPGPLARWLRNAGMALVGAL 375 (388)
T ss_pred --CCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHhhC
Confidence 012347999999999999999999999999999999999999999999876533
No 36
>PRK08244 hypothetical protein; Provisional
Probab=99.98 E-value=2e-30 Score=242.30 Aligned_cols=258 Identities=19% Similarity=0.123 Sum_probs=182.3
Q ss_pred ceeeeHHHHHHHHHhhC--CCCcEEecceEEEEEeeCCeeEEEec--CC-CEEeecEEEecCCCchhhhhhhCCCCCcc-
Q 021278 8 MRCVRRKLLLETLAKEL--PSGTIRYSSQVVSIEESGHFKLLHLA--DG-TILKTKVLIGCDGVNSIVAKWLGFKNPAF- 81 (315)
Q Consensus 8 ~~~i~R~~L~~~L~~~~--~~~~i~~~~~v~~~~~~~~~~~v~~~--~g-~~~~ad~vVgADG~~S~vr~~l~~~~~~~- 81 (315)
.+.++|..|++.|.+.+ .++++++++++++++.++++++|+++ +| .+++||+||||||.+|.||+.+|+..+..
T Consensus 94 ~~~i~q~~le~~L~~~~~~~gv~v~~~~~v~~i~~~~~~v~v~~~~~~g~~~i~a~~vVgADG~~S~vR~~lgi~~~g~~ 173 (493)
T PRK08244 94 TLFLPQAETEKVLEEHARSLGVEIFRGAEVLAVRQDGDGVEVVVRGPDGLRTLTSSYVVGADGAGSIVRKQAGIAFPGTD 173 (493)
T ss_pred EEEecHHHHHHHHHHHHHHcCCeEEeCCEEEEEEEcCCeEEEEEEeCCccEEEEeCEEEECCCCChHHHHhcCCCccCCC
Confidence 46799999999999876 35899999999999998888888775 45 47999999999999999999998764332
Q ss_pred ccceEEEeeeecCCCCCCCCceEEEecCCeEEEEEecCCCeEEEEEEeeCCCC-CcccccChHHHHHHHHHHhcCCChHH
Q 021278 82 VGRSAIRGYSDFKGSHGFEPNFLQFFGKGLRSGFIPCDDQTIYWFFTWTSSSQ-DKELEDHSAELKQFVLGKLHDLPAQV 160 (315)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (315)
.....+.+.+...... +.....++.+++.++++|.+++..+|.+....... ......+.+++.+.+.+.+....
T Consensus 174 ~~~~~~~~~~~~~~~~--~~~~~~~~~~~g~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--- 248 (493)
T PRK08244 174 ATFTAMLGDVVLKDPP--PSSVLSLCTREGGVMIVPLSGGIYRVLIIDPERPQVPKDEPVTLEELKTSLIRICGTDF--- 248 (493)
T ss_pred cceEEEEEEEEecCCC--CcceeEEEeCCceEEEEECCCCeEEEEEEcCCcccccCCCCCCHHHHHHHHHHhhCCCC---
Confidence 2334444444333222 22233445677778899999887665543322111 11223456666666665443110
Q ss_pred HHHHHcCCCcceeeccccccCcccccccCcCCCcEEEeccCCCCCCCCCccchhhhhhHHHHHHHHHHHHHhccCCCCCC
Q 021278 161 KAVIEKTPLDSIISSRLQYRQPQEVLWGNISRGSVCVAGDALHPMTPDIGQGGCAALEDGIVLARCINEALKTKQGVGEE 240 (315)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~LiGDAAh~~~P~~G~G~~~al~da~~La~~l~~~~~~~~~~~~~ 240 (315)
..........+++. ....++|.+|||+|+|||||.++|++|||+|+||+||.+|++.|..++.+.
T Consensus 249 ----~~~~~~~~~~~~~~-----~~~a~~~~~gRv~L~GDAAH~~~P~~GqG~n~gi~DA~~La~~La~~l~g~------ 313 (493)
T PRK08244 249 ----GLNDPVWMSRFGNA-----TRQAERYRSGRIFLAGDAAHIHFPAGGQGLNVGLQDAMNLGWKLAAAIKGW------ 313 (493)
T ss_pred ----CcCCeeEEEecccc-----eeeHhhhccCcEEEeecceeccCCccccccccchhhHHHHHHHHHHHHcCC------
Confidence 00011111122221 123457899999999999999999999999999999999999999987652
Q ss_pred chhhhhHHHHHHHHHHHHhhhhhHHHHHHHHHHhhhhhccCchHHHHHHHHHH
Q 021278 241 DEEEFNKRVEMGLKRYAKERRWRCFELISIAYLVGSIQQSDGKILNFLRDKIL 293 (315)
Q Consensus 241 ~~~~s~~~~~~~l~~Y~~~r~~~~~~~~~~s~~~~~~~~~~~~~~~~~r~~~l 293 (315)
..+.+|+.|+++|++....++..+.....++... +....+|+...
T Consensus 314 -------~~~~lL~~Ye~eR~~~~~~~~~~~~~~~~~~~~~-~~~~~~R~~~~ 358 (493)
T PRK08244 314 -------APDWLLDSYHAERHPVGTALLRNTEVQTKLFDFT-RPGLALRSMLS 358 (493)
T ss_pred -------CCchhhhhhHHHHHHHHHHHHHHhHHHHHHhcCC-chhHHHHHHHH
Confidence 4567899999999999999999998888888654 55667777543
No 37
>PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=99.98 E-value=1.1e-30 Score=238.11 Aligned_cols=268 Identities=17% Similarity=0.141 Sum_probs=189.9
Q ss_pred ceeeeHHHHHHHHHhhC---CCCcEEecceEEEEEeeCCeeEEEecCCCEEeecEEEecCCCchhhhhhhCCCCCc-ccc
Q 021278 8 MRCVRRKLLLETLAKEL---PSGTIRYSSQVVSIEESGHFKLLHLADGTILKTKVLIGCDGVNSIVAKWLGFKNPA-FVG 83 (315)
Q Consensus 8 ~~~i~R~~L~~~L~~~~---~~~~i~~~~~v~~~~~~~~~~~v~~~~g~~~~ad~vVgADG~~S~vr~~l~~~~~~-~~~ 83 (315)
.+.++|..|.+.|.+.+ ++++++++++|+++..+++++.|++.+|.++++|+||+|||.+|.+|+.+++.... +.+
T Consensus 106 ~~~~~~~~l~~~l~~~~~~~~g~~~~~~~~v~~i~~~~~~~~v~~~~g~~~~a~~vI~AdG~~S~vr~~~~~~~~~~~~~ 185 (395)
T PRK05732 106 GYVVELHDVGQRLFALLDKAPGVTLHCPARVANVERTQGSVRVTLDDGETLTGRLLVAADGSHSALREALGIDWQQHPYE 185 (395)
T ss_pred EEEEEhHHHHHHHHHHHhcCCCcEEEcCCEEEEEEEcCCeEEEEECCCCEEEeCEEEEecCCChhhHHhhCCCccceecC
Confidence 36789999999998865 45899999999999988888889999998999999999999999999999776332 335
Q ss_pred ceEEEeeeecCCCCCCCCceEEEecCCeEEEEEecCCCeEEEEEEeeCCCCCcccccChHHHHHHHHHHhcCCChHHHHH
Q 021278 84 RSAIRGYSDFKGSHGFEPNFLQFFGKGLRSGFIPCDDQTIYWFFTWTSSSQDKELEDHSAELKQFVLGKLHDLPAQVKAV 163 (315)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (315)
...+.+.+....... ...+. .+..++.++++|.+++...++..+..+........+.+++.+.+.+.+. + ....+
T Consensus 186 ~~~~~~~~~~~~~~~-~~~~~-~~~~~g~~~~~p~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~--~~~~~ 260 (395)
T PRK05732 186 QVAVIANVTTSEAHQ-GRAFE-RFTEHGPLALLPMSDGRCSLVWCHPLEDAEEVLSWSDAQFLAELQQAFG-W--RLGRI 260 (395)
T ss_pred CEEEEEEEEecCCCC-CEEEE-eecCCCCEEEeECCCCCeEEEEECCHHHHHHHHcCCHHHHHHHHHHHHH-h--hhcce
Confidence 555555544332211 12222 2334456778999988765544432211111112244555566665442 1 11111
Q ss_pred HHcCCCcceeeccccccCcccccccCcCCCcEEEeccCCCCCCCCCccchhhhhhHHHHHHHHHHHHHhccCCCCCCchh
Q 021278 164 IEKTPLDSIISSRLQYRQPQEVLWGNISRGSVCVAGDALHPMTPDIGQGGCAALEDGIVLARCINEALKTKQGVGEEDEE 243 (315)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~LiGDAAh~~~P~~G~G~~~al~da~~La~~l~~~~~~~~~~~~~~~~ 243 (315)
.. ......+++... ..++|.++||+|+|||||.++|++|||+|+||+||..|+++|..++... +
T Consensus 261 ~~---~~~~~~~~l~~~-----~~~~~~~grv~LvGDAAh~~~P~~GqG~~~al~Da~~La~~L~~~~~~~---~----- 324 (395)
T PRK05732 261 TH---AGKRSAYPLALV-----TAAQQISHRLALVGNAAQTLHPIAGQGFNLGLRDVMSLAETLTQALARG---E----- 324 (395)
T ss_pred ee---cCCcceeccccc-----chhhhccCcEEEEeecccccCCccccccchHHHHHHHHHHHHHHHHhcC---C-----
Confidence 11 111222333222 2346889999999999999999999999999999999999998876541 0
Q ss_pred hhhHHHHHHHHHHHHhhhhhHHHHHHHHHHhhhhhccCchHHHHHHHHHHHHHHH
Q 021278 244 EFNKRVEMGLKRYAKERRWRCFELISIAYLVGSIQQSDGKILNFLRDKILASFLV 298 (315)
Q Consensus 244 ~s~~~~~~~l~~Y~~~r~~~~~~~~~~s~~~~~~~~~~~~~~~~~r~~~l~~~~~ 298 (315)
....+++|+.|+++|+++....+..+..+..++..+.++...+|+..++.+..
T Consensus 325 --~~~~~~~l~~Y~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ 377 (395)
T PRK05732 325 --DIGDYAVLQRYQQRRQQDREATIGFTDGLVRLFANRWAPLVVGRNLGLMAMDL 377 (395)
T ss_pred --CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHcc
Confidence 01235889999999999999999999999999999888999999999876554
No 38
>PRK08294 phenol 2-monooxygenase; Provisional
Probab=99.98 E-value=2.1e-30 Score=246.78 Aligned_cols=258 Identities=18% Similarity=0.149 Sum_probs=174.6
Q ss_pred ccceeeeHHHHHHHHHhhCCC----CcEEecceEEEEEeeCC---eeEEEec------CC--CEEeecEEEecCCCchhh
Q 021278 6 HEMRCVRRKLLLETLAKELPS----GTIRYSSQVVSIEESGH---FKLLHLA------DG--TILKTKVLIGCDGVNSIV 70 (315)
Q Consensus 6 ~~~~~i~R~~L~~~L~~~~~~----~~i~~~~~v~~~~~~~~---~~~v~~~------~g--~~~~ad~vVgADG~~S~v 70 (315)
++.+.++|..+.+.|.+.+.. +++++|++|++++.+++ .|+|+++ +| ++++|||||||||++|.|
T Consensus 133 ~~~~~l~Q~~le~~L~~~l~~~g~~v~v~~g~~v~~~~~~~~~~~~V~v~l~~~~~~~~g~~~tv~A~~lVGaDGa~S~V 212 (634)
T PRK08294 133 FPHVIVNQARVHDYFLDVMRNSPTRLEPDYGREFVDLEVDEEGEYPVTVTLRRTDGEHEGEEETVRAKYVVGCDGARSRV 212 (634)
T ss_pred CccEeeCHHHHHHHHHHHHHhcCCceEEEeCcEEEEEEECCCCCCCEEEEEEECCCCCCCceEEEEeCEEEECCCCchHH
Confidence 345789999999999987632 57899999999987643 3888885 34 489999999999999999
Q ss_pred hhhhCCCCCccccceEEEeeeecC--CCCCC-CCceEEEecCCeEEEEEecCCCe-EEEEEEeeCCCC---CcccccChH
Q 021278 71 AKWLGFKNPAFVGRSAIRGYSDFK--GSHGF-EPNFLQFFGKGLRSGFIPCDDQT-IYWFFTWTSSSQ---DKELEDHSA 143 (315)
Q Consensus 71 r~~l~~~~~~~~~~~~~~~~~~~~--~~~~~-~~~~~~~~~~~~~~~~~p~~~~~-~~~~~~~~~~~~---~~~~~~~~~ 143 (315)
|+.+|+........ ..+++++.. ...+. .....+..+.++.+.++|.+++. +++++.....+. ......+.+
T Consensus 213 R~~lgi~~~G~~~~-~~~~v~dv~~~~~~p~~~~~~~~~~~~~g~~~~~P~~~g~~~r~~~~~~~~~~~~~~~~~~~t~e 291 (634)
T PRK08294 213 RKAIGRELRGDSAN-HAWGVMDVLAVTDFPDIRLKCAIQSASEGSILLIPREGGYLVRLYVDLGEVPPDERVAVRNTTVE 291 (634)
T ss_pred HHhcCCCccCCccc-ceEEEEEEEEccCCCCcceEEEEecCCCceEEEEECCCCeEEEEEEecCcCCCccccccccCCHH
Confidence 99998875443211 122332221 11111 11222333566788899999885 444433221111 112345677
Q ss_pred HHHHHHHHHhcCCChHHHHHHHcCCCcceeeccccccCcccccc----c-CcCCCcEEEeccCCCCCCCCCccchhhhhh
Q 021278 144 ELKQFVLGKLHDLPAQVKAVIEKTPLDSIISSRLQYRQPQEVLW----G-NISRGSVCVAGDALHPMTPDIGQGGCAALE 218 (315)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~-~~~~~~v~LiGDAAh~~~P~~G~G~~~al~ 218 (315)
++.+.+.+.+..+...+. ....+..+++..+....+.. . .|..|||+|+|||||.++|.+|||||+||+
T Consensus 292 ~l~~~~~~~~~p~~~~~~------~v~w~s~y~i~~r~a~~f~~~~~~~~~~r~gRVfLaGDAAH~hsP~~GQGmN~giq 365 (634)
T PRK08294 292 EVIAKAQRILHPYTLDVK------EVAWWSVYEVGQRLTDRFDDVPAEEAGTRLPRVFIAGDACHTHSAKAGQGMNVSMQ 365 (634)
T ss_pred HHHHHHHHhcCCCCCcee------EEeEEecccccceehhhcccccccccccccCCEEEEecCccCCCCccccchhhHHH
Confidence 777777665543322211 11222333332222211100 0 134699999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhccCCCCCCchhhhhHHHHHHHHHHHHhhhhhHHHHHHHHHHhhhhhccCch
Q 021278 219 DGIVLARCINEALKTKQGVGEEDEEEFNKRVEMGLKRYAKERRWRCFELISIAYLVGSIQQSDGK 283 (315)
Q Consensus 219 da~~La~~l~~~~~~~~~~~~~~~~~s~~~~~~~l~~Y~~~r~~~~~~~~~~s~~~~~~~~~~~~ 283 (315)
||.+|+|.|+.++.+. ..+++|+.|+++|+++.+.+++.++.+..+|.....
T Consensus 366 DA~nLawkLa~vl~g~-------------a~~~lL~tYe~ERrp~a~~li~~~~~~~~l~~~~~~ 417 (634)
T PRK08294 366 DGFNLGWKLAAVLSGR-------------SPPELLHTYSAERQAIAQELIDFDREWSTMMAAPPK 417 (634)
T ss_pred HHHHHHHHHHHHHcCC-------------CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCc
Confidence 9999999999988763 567899999999999999999999999999976543
No 39
>PRK06184 hypothetical protein; Provisional
Probab=99.98 E-value=1.5e-30 Score=243.60 Aligned_cols=244 Identities=18% Similarity=0.164 Sum_probs=170.5
Q ss_pred cceeeeHHHHHHHHHhhCC--CCcEEecceEEEEEeeCCeeEEEe---cCCCEEeecEEEecCCCchhhhhhhCCCCCcc
Q 021278 7 EMRCVRRKLLLETLAKELP--SGTIRYSSQVVSIEESGHFKLLHL---ADGTILKTKVLIGCDGVNSIVAKWLGFKNPAF 81 (315)
Q Consensus 7 ~~~~i~R~~L~~~L~~~~~--~~~i~~~~~v~~~~~~~~~~~v~~---~~g~~~~ad~vVgADG~~S~vr~~l~~~~~~~ 81 (315)
..+.++|..|++.|.+++. +++|+++++|++++++++++++++ .++++++||+||||||.+|.||+.+|+.....
T Consensus 102 ~~~~i~q~~le~~L~~~l~~~gv~i~~~~~v~~i~~~~~~v~v~~~~~~~~~~i~a~~vVgADG~~S~vR~~lgi~~~g~ 181 (502)
T PRK06184 102 LPLMVPQWRTERILRERLAELGHRVEFGCELVGFEQDADGVTARVAGPAGEETVRARYLVGADGGRSFVRKALGIGFPGE 181 (502)
T ss_pred cceecCHHHHHHHHHHHHHHCCCEEEeCcEEEEEEEcCCcEEEEEEeCCCeEEEEeCEEEECCCCchHHHHhCCCCcccC
Confidence 3468999999999998773 489999999999999888888887 55678999999999999999999998875443
Q ss_pred cc-c-eEEEeeeecCCCCCCCCceEEEecCC-eEEEEEecCCCeEEEEEEeeCCCCCcccccChHHHHHHHHHHhcCCCh
Q 021278 82 VG-R-SAIRGYSDFKGSHGFEPNFLQFFGKG-LRSGFIPCDDQTIYWFFTWTSSSQDKELEDHSAELKQFVLGKLHDLPA 158 (315)
Q Consensus 82 ~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (315)
.. . ..+.+.+..+.. ....+..+.... .++.++|+.++.. |.+.+..+.. .....+.+++.+.+...+.....
T Consensus 182 ~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~p~~~~~~-~~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~ 257 (502)
T PRK06184 182 TLGIDRMLVADVSLTGL--DRDAWHQWPDGDMGMIALCPLPGTDL-FQIQAPLPPG-GEPDLSADGLTALLAERTGRTDI 257 (502)
T ss_pred cCCCceEEEEEEEeecC--CCcceEEccCCCCcEEEEEEccCCCe-EEEEEEcCCC-ccCCCCHHHHHHHHHHhcCCCCc
Confidence 21 1 233333333221 123344555443 6777899976643 3333322221 11234566665555544331111
Q ss_pred HHHHHHHcCCCcceeeccccccCcccccccCcCCCcEEEeccCCCCCCCCCccchhhhhhHHHHHHHHHHHHHhccCCCC
Q 021278 159 QVKAVIEKTPLDSIISSRLQYRQPQEVLWGNISRGSVCVAGDALHPMTPDIGQGGCAALEDGIVLARCINEALKTKQGVG 238 (315)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~LiGDAAh~~~P~~G~G~~~al~da~~La~~l~~~~~~~~~~~ 238 (315)
. .........+++ ....+++|..|||+|+|||||.++|+.|||+|+||+||..|++.|+.++.+
T Consensus 258 ~------~~~~~~~~~~~~-----~~~~a~~~~~gRv~L~GDAAH~~~P~~GqG~n~gi~DA~~LawkLa~vl~g----- 321 (502)
T PRK06184 258 R------LHSVTWASAFRM-----NARLADRYRVGRVFLAGDAAHVHPPAGGQGLNTSVQDAYNLGWKLAAVLAG----- 321 (502)
T ss_pred c------eeeeeeeecccc-----ceeEhhhhcCCcEEEeccccccCCCcccccccchHHHHHHHHHHHHHHHcC-----
Confidence 0 000011111211 122345789999999999999999999999999999999999999987764
Q ss_pred CCchhhhhHHHHHHHHHHHHhhhhhHHHHHHHHHHhhhhhc
Q 021278 239 EEDEEEFNKRVEMGLKRYAKERRWRCFELISIAYLVGSIQQ 279 (315)
Q Consensus 239 ~~~~~~s~~~~~~~l~~Y~~~r~~~~~~~~~~s~~~~~~~~ 279 (315)
..+.+|+.|+++|++++..+++.+..+...+.
T Consensus 322 ---------~~~~lL~~Ye~eR~p~~~~~~~~s~~~~~~~~ 353 (502)
T PRK06184 322 ---------APEALLDTYEEERRPVAAAVLGLSTELLDAIK 353 (502)
T ss_pred ---------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 35779999999999999999999998887764
No 40
>PRK08132 FAD-dependent oxidoreductase; Provisional
Probab=99.97 E-value=9.2e-30 Score=240.57 Aligned_cols=259 Identities=20% Similarity=0.221 Sum_probs=176.5
Q ss_pred ceeeeHHHHHHHHHhhC---CCCcEEecceEEEEEeeCCeeEEEec--CCC-EEeecEEEecCCCchhhhhhhCCCCCcc
Q 021278 8 MRCVRRKLLLETLAKEL---PSGTIRYSSQVVSIEESGHFKLLHLA--DGT-ILKTKVLIGCDGVNSIVAKWLGFKNPAF 81 (315)
Q Consensus 8 ~~~i~R~~L~~~L~~~~---~~~~i~~~~~v~~~~~~~~~~~v~~~--~g~-~~~ad~vVgADG~~S~vr~~l~~~~~~~ 81 (315)
...++|..|++.|.+++ ++++|+++++|++++.+++++++++. ++. +++||+||||||.+|.||+.+|+.....
T Consensus 119 ~~~~~q~~le~~L~~~~~~~~~v~v~~~~~v~~i~~~~~~v~v~~~~~~g~~~i~ad~vVgADG~~S~vR~~lg~~~~g~ 198 (547)
T PRK08132 119 FINLQQYYVEGYLVERAQALPNIDLRWKNKVTGLEQHDDGVTLTVETPDGPYTLEADWVIACDGARSPLREMLGLEFEGR 198 (547)
T ss_pred eEecCHHHHHHHHHHHHHhCCCcEEEeCCEEEEEEEcCCEEEEEEECCCCcEEEEeCEEEECCCCCcHHHHHcCCCCCCc
Confidence 45689999999999876 45899999999999998888777664 444 7999999999999999999998864433
Q ss_pred c-cceEEEeeeecCCCCCCCCceEEEe----cCCeEEEEEecCCCeEEEEEEeeCCCCCcccccChHHHHHHHHHHhcCC
Q 021278 82 V-GRSAIRGYSDFKGSHGFEPNFLQFF----GKGLRSGFIPCDDQTIYWFFTWTSSSQDKELEDHSAELKQFVLGKLHDL 156 (315)
Q Consensus 82 ~-~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (315)
. ....+...+...... +.....++ .++..+.+.|.+++.+++.+...... ......+.+++.+.+.+.+...
T Consensus 199 ~~~~~~~~~d~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~ 275 (547)
T PRK08132 199 TFEDRFLIADVKMKADF--PTERWFWFDPPFHPGQSVLLHRQPDNVWRIDFQLGWDA-DPEAEKKPENVIPRVRALLGED 275 (547)
T ss_pred cccceEEEEEEEecCCC--CCeeeEEEeccCCCCcEEEEEeCCCCeEEEEEecCCCC-CchhhcCHHHHHHHHHHHcCCC
Confidence 2 122222222222221 12212233 24455656676666533322221111 1111233445544444443210
Q ss_pred ChHHHHHHHcCCCcceeeccccccCcccccccCcCCCcEEEeccCCCCCCCCCccchhhhhhHHHHHHHHHHHHHhccCC
Q 021278 157 PAQVKAVIEKTPLDSIISSRLQYRQPQEVLWGNISRGSVCVAGDALHPMTPDIGQGGCAALEDGIVLARCINEALKTKQG 236 (315)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~LiGDAAh~~~P~~G~G~~~al~da~~La~~l~~~~~~~~~ 236 (315)
.. .+......+.+ ....+++|.+|||+|+|||||.++|++|||+|+||+||.+|++.|+..+.+.
T Consensus 276 -~~-------~~~~~~~~~~~-----~~~~a~~~~~gRV~L~GDAAH~~~P~~GqG~n~gi~DA~~LawkLa~vl~g~-- 340 (547)
T PRK08132 276 -VP-------FELEWVSVYTF-----QCRRMDRFRHGRVLFAGDAAHQVSPFGARGANSGIQDADNLAWKLALVLRGR-- 340 (547)
T ss_pred -CC-------eeEEEEEeeee-----eeeeecccccccEEEEecccccCCCcccccccchHHHHHHHHHHHHHHHcCC--
Confidence 00 00001111111 1223457999999999999999999999999999999999999999987753
Q ss_pred CCCCchhhhhHHHHHHHHHHHHhhhhhHHHHHHHHHHhhhhhccCchHHHHHHHHHHHH
Q 021278 237 VGEEDEEEFNKRVEMGLKRYAKERRWRCFELISIAYLVGSIQQSDGKILNFLRDKILAS 295 (315)
Q Consensus 237 ~~~~~~~~s~~~~~~~l~~Y~~~r~~~~~~~~~~s~~~~~~~~~~~~~~~~~r~~~l~~ 295 (315)
..+.+|+.|+++|+++++.+++.+..+..++...++....+|+..+..
T Consensus 341 -----------~~~~lL~~Ye~eR~p~~~~~~~~s~~~~~~~~~~~~~~~~~r~~~~~~ 388 (547)
T PRK08132 341 -----------APDSLLDSYASEREFAADENIRNSTRSTDFITPKSPVSRLFRDAVLRL 388 (547)
T ss_pred -----------CcHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCHHHHHHHHHHHhh
Confidence 467899999999999999999999999999888888888888887763
No 41
>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways. In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....
Probab=99.97 E-value=4.3e-31 Score=236.85 Aligned_cols=243 Identities=25% Similarity=0.263 Sum_probs=159.8
Q ss_pred CCccceeeeHHHHHHHHHhhCC--CCcEEecceEEEEEeeCCeeEEEecCC-----CEEeecEEEecCCCchhhhhhhCC
Q 021278 4 GEHEMRCVRRKLLLETLAKELP--SGTIRYSSQVVSIEESGHFKLLHLADG-----TILKTKVLIGCDGVNSIVAKWLGF 76 (315)
Q Consensus 4 ~~~~~~~i~R~~L~~~L~~~~~--~~~i~~~~~v~~~~~~~~~~~v~~~~g-----~~~~ad~vVgADG~~S~vr~~l~~ 76 (315)
.......++|..|++.|.+.+. ++++++++++++++++++++++.+.++ .+++||+||||||++|.||+.+++
T Consensus 101 ~~~~~~~~~r~~l~~~L~~~~~~~gv~i~~~~~v~~~~~d~~~~~~~~~~~~~g~~~~i~adlvVgADG~~S~vR~~l~~ 180 (356)
T PF01494_consen 101 KGPYGHVIDRPELDRALREEAEERGVDIRFGTRVVSIEQDDDGVTVVVRDGEDGEEETIEADLVVGADGAHSKVRKQLGI 180 (356)
T ss_dssp GSSCEEEEEHHHHHHHHHHHHHHHTEEEEESEEEEEEEEETTEEEEEEEETCTCEEEEEEESEEEE-SGTT-HHHHHTTG
T ss_pred cCCcchhhhHHHHHHhhhhhhhhhhhhheeeeecccccccccccccccccccCCceeEEEEeeeecccCcccchhhhccc
Confidence 4566788999999999999863 399999999999999988876666443 279999999999999999999987
Q ss_pred CCCccccc--eEEEeeeecC-CCCCCCCceEEEecCCeEEEEEecCC-CeEEEEEEeeCCCCC--cccccChHHHHHHHH
Q 021278 77 KNPAFVGR--SAIRGYSDFK-GSHGFEPNFLQFFGKGLRSGFIPCDD-QTIYWFFTWTSSSQD--KELEDHSAELKQFVL 150 (315)
Q Consensus 77 ~~~~~~~~--~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~p~~~-~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~ 150 (315)
..+..... ..+....... ..........+...+...+.++|..+ +...+.+.+...... .......+.+.+.+.
T Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (356)
T PF01494_consen 181 DRPGPDTVYRWGWFGIVFDSDLSDPWEDHCFIYSPPSGGFAIIPLENGDRSRFVWFLPFDESKEERPEEFSPEELFANLP 260 (356)
T ss_dssp GEEEEEEEEEEEEEEEEEECHSHTTTSCEEEEEEETTEEEEEEEETTTTEEEEEEEEETTTTTCCSTHCHHHHHHHHHHH
T ss_pred cccCccccccccccccccccccccccccccccccccccceeEeeccCCccceEEEeeecccccccccccccccccccccc
Confidence 63333211 2222221111 11111222334445556667899987 433344444333221 222233344444444
Q ss_pred HHhcCCChHHHHHHHcCCCcceeeccccccCcccccccCcCCCcEEEeccCCCCCCCCCccchhhhhhHHHHHHHHHHHH
Q 021278 151 GKLHDLPAQVKAVIEKTPLDSIISSRLQYRQPQEVLWGNISRGSVCVAGDALHPMTPDIGQGGCAALEDGIVLARCINEA 230 (315)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~LiGDAAh~~~P~~G~G~~~al~da~~La~~l~~~ 230 (315)
+.+.... ... ....+..+++.. ...++|.+|||+|||||||+|+|+.|||+|+||+||..|+++|..+
T Consensus 261 ~~~~~~~------~~~-~~~~~~~~~~~~-----~~~~~~~~grv~LiGDAAh~~~P~~GqG~n~Ai~da~~La~~L~~~ 328 (356)
T PF01494_consen 261 EIFGPDL------LET-EIDEISAWPIPQ-----RVADRWVKGRVLLIGDAAHAMDPFSGQGINMAIEDAAALAELLAAA 328 (356)
T ss_dssp HHHHTCH------HHH-EEEEEEEEEEEE-----EEESSSEETTEEE-GGGTEEE-CCTSHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccc------ccc-cccccccccccc-----ccccccccceeEEeccceeeecccccCCCCcccccHHHHHHHHHHH
Confidence 4332111 111 112333333322 2345789999999999999999999999999999999999999998
Q ss_pred HhccCCCCCCchhhhhHHHHHHHHHHHHhhhhhHHHHHHHH
Q 021278 231 LKTKQGVGEEDEEEFNKRVEMGLKRYAKERRWRCFELISIA 271 (315)
Q Consensus 231 ~~~~~~~~~~~~~~s~~~~~~~l~~Y~~~r~~~~~~~~~~s 271 (315)
+.+. ..+++|+.|+++|+++++.+++.+
T Consensus 329 ~~g~-------------~~~~~l~~Y~~~r~~~~~~~~~~~ 356 (356)
T PF01494_consen 329 LKGE-------------ASEEALKAYEQERRPRARKAVQFD 356 (356)
T ss_dssp HTTS-------------SHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hcCC-------------cHHHHHHHHHHHHHHHHHHHHhCC
Confidence 8753 567889999999999999998764
No 42
>TIGR02360 pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase. Members of this family are the enzyme 4-hydroxybenzoate 3-monooxygenase, also called p-hydroxybenzoate hydroxylase. It converts 4-hydroxybenzoate + NADPH + molecular oxygen to protocatechuate + NADPH + water. It contains monooxygenase (pfam01360) and FAD binding (pfam01494) domains. Pathways that contain this enzyme include the protocatechuate 4,5-degradation pathway.
Probab=99.97 E-value=8.8e-30 Score=231.02 Aligned_cols=266 Identities=14% Similarity=0.161 Sum_probs=175.7
Q ss_pred eeeHHHHHHHHHhhCC--CCcEEecceEEEEEe-eCCeeEEEec-CCC--EEeecEEEecCCCchhhhhhhCCCC-Cccc
Q 021278 10 CVRRKLLLETLAKELP--SGTIRYSSQVVSIEE-SGHFKLLHLA-DGT--ILKTKVLIGCDGVNSIVAKWLGFKN-PAFV 82 (315)
Q Consensus 10 ~i~R~~L~~~L~~~~~--~~~i~~~~~v~~~~~-~~~~~~v~~~-~g~--~~~ad~vVgADG~~S~vr~~l~~~~-~~~~ 82 (315)
...|..|...|.+++. +++++++++++.+.. +++.+.|++. +|+ +++||+||||||.+|.||++++... +.+.
T Consensus 99 ~~~~~~l~~~L~~~~~~~g~~~~~~~~~v~~~~~~~~~~~V~~~~~g~~~~i~adlvIGADG~~S~VR~~l~~~~~~~~~ 178 (390)
T TIGR02360 99 VYGQTEVTRDLMEAREAAGLTTVYDADDVRLHDLAGDRPYVTFERDGERHRLDCDFIAGCDGFHGVSRASIPAEVLKEFE 178 (390)
T ss_pred EeCHHHHHHHHHHHHHhcCCeEEEeeeeEEEEecCCCccEEEEEECCeEEEEEeCEEEECCCCchhhHHhcCcccceeee
Confidence 4467888888888763 478999999888865 5566778885 775 7999999999999999999985543 2233
Q ss_pred cc--eEEEeeeecCCCCCCCCceEEEecCCeEEEEEecCCC-eEEEEEEeeCCCCCcccccChHHHHHHHHHHhcCCChH
Q 021278 83 GR--SAIRGYSDFKGSHGFEPNFLQFFGKGLRSGFIPCDDQ-TIYWFFTWTSSSQDKELEDHSAELKQFVLGKLHDLPAQ 159 (315)
Q Consensus 83 ~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (315)
+. ..+.+++..... .... .++.+.+..+.++|+.++ ...|+..+.... .......+.+.+.+.+.+ .+.
T Consensus 179 ~~~~~~~~~l~~~~~~--~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~---~~~ 250 (390)
T TIGR02360 179 RVYPFGWLGILSETPP--VSHE-LIYSNHERGFALCSMRSATRSRYYVQVPLTD--KVEDWSDDRFWAELKRRL---PSE 250 (390)
T ss_pred ccCCcceEEEecCCCC--CCCc-eEEEeCCCceEEEeccCCCcceEEEEcCCCC--ChhhCChhHHHHHHHHhc---Cch
Confidence 32 244454432211 1122 244455566667777543 223544432221 111222344556666554 233
Q ss_pred HHHHHHcCCCcceeeccccccCcccccccCcCCCcEEEeccCCCCCCCCCccchhhhhhHHHHHHHHHHHHHhccCCCCC
Q 021278 160 VKAVIEKTPLDSIISSRLQYRQPQEVLWGNISRGSVCVAGDALHPMTPDIGQGGCAALEDGIVLARCINEALKTKQGVGE 239 (315)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~LiGDAAh~~~P~~G~G~~~al~da~~La~~l~~~~~~~~~~~~ 239 (315)
+...+...+.......++. ....++|..|||+|||||||.++|+.|||+|+||+||..|+++|......
T Consensus 251 ~~~~~~~~~~~~~~~~~l~-----~~~~~~~~~grvvLvGDAAH~~~P~~GQG~n~aieDA~~La~~L~~~~~~------ 319 (390)
T TIGR02360 251 AAERLVTGPSIEKSIAPLR-----SFVCEPMQYGRLFLAGDAAHIVPPTGAKGLNLAASDVHYLYEALLEHYQE------ 319 (390)
T ss_pred hhhhhccCCccceeeeeHH-----hhccccCccCCEEEEEccccCCCCCcCCchhHHHHHHHHHHHHHHHHhcc------
Confidence 4434332221111222221 23345789999999999999999999999999999999999999775332
Q ss_pred CchhhhhHHHHHHHHHHHHhhhhhHHHHHHHHHHhhhhhcc---CchHHHHHHHHHHHHHHHhhhc
Q 021278 240 EDEEEFNKRVEMGLKRYAKERRWRCFELISIAYLVGSIQQS---DGKILNFLRDKILASFLVGLLL 302 (315)
Q Consensus 240 ~~~~~s~~~~~~~l~~Y~~~r~~~~~~~~~~s~~~~~~~~~---~~~~~~~~r~~~l~~~~~~~~~ 302 (315)
..+.+|+.|++.|++++..+++.|+.+..+++. ..+....++.+-+..++.++..
T Consensus 320 --------~~~~al~~Y~~~R~~r~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 377 (390)
T TIGR02360 320 --------GSSAGIEGYSARALARVWKAERFSWWMTSLLHRFPDTDAFDQRIQQAELEYLLGSEAA 377 (390)
T ss_pred --------ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHhCCHHH
Confidence 467899999999999999999999999888762 2345555566667666655543
No 43
>PRK07190 hypothetical protein; Provisional
Probab=99.97 E-value=1.1e-29 Score=235.56 Aligned_cols=243 Identities=15% Similarity=0.143 Sum_probs=172.3
Q ss_pred cceeeeHHHHHHHHHhhC--CCCcEEecceEEEEEeeCCeeEEEecCCCEEeecEEEecCCCchhhhhhhCCCCCccccc
Q 021278 7 EMRCVRRKLLLETLAKEL--PSGTIRYSSQVVSIEESGHFKLLHLADGTILKTKVLIGCDGVNSIVAKWLGFKNPAFVGR 84 (315)
Q Consensus 7 ~~~~i~R~~L~~~L~~~~--~~~~i~~~~~v~~~~~~~~~~~v~~~~g~~~~ad~vVgADG~~S~vr~~l~~~~~~~~~~ 84 (315)
..+.+.+..+++.|.+++ .+++|+++++|++++++++++.+.+.+|++++|++||||||.+|.||+.+|++.+.....
T Consensus 102 ~~~~~~q~~le~~L~~~~~~~Gv~v~~~~~v~~l~~~~~~v~v~~~~g~~v~a~~vVgADG~~S~vR~~lgi~f~g~~~~ 181 (487)
T PRK07190 102 HFLMLGQSYVEKLLDDKLKEAGAAVKRNTSVVNIELNQAGCLTTLSNGERIQSRYVIGADGSRSFVRNHFNVPFEIIRPQ 181 (487)
T ss_pred ceEecCHHHHHHHHHHHHHHCCCEEEeCCEEEEEEEcCCeeEEEECCCcEEEeCEEEECCCCCHHHHHHcCCCccccccc
Confidence 356789999999998876 359999999999999998888888888889999999999999999999999875543322
Q ss_pred eEE-EeeeecCCCCCCCCceEEEecCCeEEEEEecCCCeEEEEEEeeCCCCCcccccChHHHHHHHHHHhcCCChHHHHH
Q 021278 85 SAI-RGYSDFKGSHGFEPNFLQFFGKGLRSGFIPCDDQTIYWFFTWTSSSQDKELEDHSAELKQFVLGKLHDLPAQVKAV 163 (315)
Q Consensus 85 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (315)
..+ ..........+.......+....+.+.++|.+++..++++.. + ....+.+++.+.+.+.+......
T Consensus 182 ~~~~~~d~~~~~~~~~~~~~~~~~~~~g~~~~~p~~~~~~r~~~~~--~----~~~~t~~~~~~~l~~~~~~~~~~---- 251 (487)
T PRK07190 182 IIWAVIDGVIDTDFPKVPEIIVFQAETSDVAWIPREGEIDRFYVRM--D----TKDFTLEQAIAKINHAMQPHRLG---- 251 (487)
T ss_pred eeEEEEEEEEccCCCCCcceEEEEcCCCCEEEEECCCCEEEEEEEc--C----CCCCCHHHHHHHHHHhcCCCCCc----
Confidence 211 111112211111122223444555677899987765544322 1 12345666666666544322111
Q ss_pred HHcCCCcceeeccccccCcccccccCcC-CCcEEEeccCCCCCCCCCccchhhhhhHHHHHHHHHHHHHhccCCCCCCch
Q 021278 164 IEKTPLDSIISSRLQYRQPQEVLWGNIS-RGSVCVAGDALHPMTPDIGQGGCAALEDGIVLARCINEALKTKQGVGEEDE 242 (315)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~LiGDAAh~~~P~~G~G~~~al~da~~La~~l~~~~~~~~~~~~~~~ 242 (315)
......+..+++. ...+++|. .|||+|+|||||.++|++|||||+||+||.+|+|.|+.++.+.
T Consensus 252 --~~~~~w~s~~~~~-----~r~a~~~r~~gRV~LaGDAAH~h~P~gGQGmN~giqDA~nL~wkLa~v~~g~-------- 316 (487)
T PRK07190 252 --FKEIVWFSQFSVK-----ESVAEHFFIQDRIFLAGDACHIHSVNGGQGLNTGLADAFNLIWKLNMVIHHG-------- 316 (487)
T ss_pred --eEEEEEEEEeeeC-----cEehhhcCcCCcEEEEecccccCCCccccchhhhHHHHHHHHHHHHHHHcCC--------
Confidence 1111122233332 23345775 7999999999999999999999999999999999999887763
Q ss_pred hhhhHHHHHHHHHHHHhhhhhHHHHHHHHHHhhhhhc
Q 021278 243 EEFNKRVEMGLKRYAKERRWRCFELISIAYLVGSIQQ 279 (315)
Q Consensus 243 ~~s~~~~~~~l~~Y~~~r~~~~~~~~~~s~~~~~~~~ 279 (315)
..+..|+.|+++|++..+.++..++.+.....
T Consensus 317 -----a~~~lLdtY~~eR~p~a~~vl~~t~~~~~~~~ 348 (487)
T PRK07190 317 -----ASPELLQSYEAERKPVAQGVIETSGELVRSTK 348 (487)
T ss_pred -----CcHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 45789999999999999999999998877654
No 44
>PRK06126 hypothetical protein; Provisional
Probab=99.97 E-value=2.7e-29 Score=237.47 Aligned_cols=243 Identities=22% Similarity=0.322 Sum_probs=168.1
Q ss_pred ceeeeHHHHHHHHHhhC---CCCcEEecceEEEEEeeCCeeEEEecC---CC--EEeecEEEecCCCchhhhhhhCCCCC
Q 021278 8 MRCVRRKLLLETLAKEL---PSGTIRYSSQVVSIEESGHFKLLHLAD---GT--ILKTKVLIGCDGVNSIVAKWLGFKNP 79 (315)
Q Consensus 8 ~~~i~R~~L~~~L~~~~---~~~~i~~~~~v~~~~~~~~~~~v~~~~---g~--~~~ad~vVgADG~~S~vr~~l~~~~~ 79 (315)
...++|..|.+.|.+++ ++++|+++++|++++.+++++++++.+ |+ ++++|+||||||.+|.||+.+|+...
T Consensus 120 ~~~i~q~~l~~~L~~~~~~~~~v~i~~~~~v~~i~~~~~~v~v~~~~~~~g~~~~i~ad~vVgADG~~S~VR~~lgi~~~ 199 (545)
T PRK06126 120 PHRIPQKYLEPILLEHAAAQPGVTLRYGHRLTDFEQDADGVTATVEDLDGGESLTIRADYLVGCDGARSAVRRSLGISYE 199 (545)
T ss_pred cccCCHHHHHHHHHHHHHhCCCceEEeccEEEEEEECCCeEEEEEEECCCCcEEEEEEEEEEecCCcchHHHHhcCCccc
Confidence 56799999999999875 468999999999999988887777643 54 78999999999999999999987644
Q ss_pred ccc-cceEEEeeeecCCC---CCCCCce-EEEecCCeEEEEEecCCCeEEEEEE-eeCCCCCcccccChHHHHHHHHHHh
Q 021278 80 AFV-GRSAIRGYSDFKGS---HGFEPNF-LQFFGKGLRSGFIPCDDQTIYWFFT-WTSSSQDKELEDHSAELKQFVLGKL 153 (315)
Q Consensus 80 ~~~-~~~~~~~~~~~~~~---~~~~~~~-~~~~~~~~~~~~~p~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (315)
... ....+..++..+.. ......+ .++++++....++|..++.. |.+. +.... .....+.+++.+.+.+.+
T Consensus 200 g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~-~~~~~~~~~~--~~~~~~~~~~~~~~~~~~ 276 (545)
T PRK06126 200 GTSGLQRDLSIYIRAPGLAALVGHDPAWMYWLFNPDRRGVLVAIDGRDE-WLFHQLRGGE--DEFTIDDVDARAFVRRGV 276 (545)
T ss_pred cCCCcceEEEEEEEcCchHHHhcCCCceEEEEECCCccEEEEEECCCCe-EEEEEecCCC--CCCCCCHHHHHHHHHHhc
Confidence 322 11222223333211 1112223 33455555555667665543 4443 22221 122345666777777665
Q ss_pred cCCChHHHHHHHcCCCcceeeccccccCcccccccCcCCCcEEEeccCCCCCCCCCccchhhhhhHHHHHHHHHHHHHhc
Q 021278 154 HDLPAQVKAVIEKTPLDSIISSRLQYRQPQEVLWGNISRGSVCVAGDALHPMTPDIGQGGCAALEDGIVLARCINEALKT 233 (315)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~LiGDAAh~~~P~~G~G~~~al~da~~La~~l~~~~~~ 233 (315)
.. .+...+. ....+. .....+++|.+|||+|+|||||.++|+.|||+|+||+||..|++.|..++.+
T Consensus 277 ~~---~~~~~i~-----~~~~w~-----~~~~~a~~~~~gRv~L~GDAAH~~~P~~GqG~N~gieDa~~La~~La~~~~~ 343 (545)
T PRK06126 277 GE---DIDYEVL-----SVVPWT-----GRRLVADSYRRGRVFLAGDAAHLFTPTGGYGMNTGIGDAVNLAWKLAAVLNG 343 (545)
T ss_pred CC---CCCeEEE-----eecccc-----hhheehhhhccCCEEEechhhccCCCCcCcccchhHHHHHHHHHHHHHHHcC
Confidence 41 1110000 001111 1223456899999999999999999999999999999999999999987765
Q ss_pred cCCCCCCchhhhhHHHHHHHHHHHHhhhhhHHHHHHHHHHhhhhhc
Q 021278 234 KQGVGEEDEEEFNKRVEMGLKRYAKERRWRCFELISIAYLVGSIQQ 279 (315)
Q Consensus 234 ~~~~~~~~~~~s~~~~~~~l~~Y~~~r~~~~~~~~~~s~~~~~~~~ 279 (315)
. ..+++|+.|+++|++++..+++.+..+...+.
T Consensus 344 ~-------------~~~~lL~~Y~~eR~p~~~~~~~~s~~~~~~~~ 376 (545)
T PRK06126 344 W-------------AGPALLDSYEAERRPIAARNTDYARRNADALG 376 (545)
T ss_pred C-------------CcHHHHhhhHHHhhHHHHHHHHHHHHHHHHhc
Confidence 3 45789999999999999999999998877664
No 45
>PLN00093 geranylgeranyl diphosphate reductase; Provisional
Probab=99.93 E-value=2.5e-24 Score=197.58 Aligned_cols=249 Identities=17% Similarity=0.151 Sum_probs=161.5
Q ss_pred ceeeeHHHHHHHHHhhC--CCCcEEecceEEEEEee---CCeeEEEecC-------C--CEEeecEEEecCCCchhhhhh
Q 021278 8 MRCVRRKLLLETLAKEL--PSGTIRYSSQVVSIEES---GHFKLLHLAD-------G--TILKTKVLIGCDGVNSIVAKW 73 (315)
Q Consensus 8 ~~~i~R~~L~~~L~~~~--~~~~i~~~~~v~~~~~~---~~~~~v~~~~-------g--~~~~ad~vVgADG~~S~vr~~ 73 (315)
..+++|..|++.|.+++ .+++++.+ ++++++.. ++.+.|.+.+ | .+++||+||||||++|.||+.
T Consensus 126 ~~~v~R~~~d~~L~~~A~~~Ga~~~~~-~v~~i~~~~~~~~~~~v~~~~~~~~~~~g~~~~v~a~~VIgADG~~S~vrr~ 204 (450)
T PLN00093 126 IGMVRREVLDSFLRERAQSNGATLING-LFTRIDVPKDPNGPYVIHYTSYDSGSGAGTPKTLEVDAVIGADGANSRVAKD 204 (450)
T ss_pred EEEecHHHHHHHHHHHHHHCCCEEEec-eEEEEEeccCCCCcEEEEEEeccccccCCCccEEEeCEEEEcCCcchHHHHH
Confidence 34699999999999976 45888876 57777643 2346666643 3 489999999999999999999
Q ss_pred hCCCCCccccceEEEeeeecCCC--CCCCCceEEEec----CCeEEEEEecCCCeEEEEEEeeCCCCCcccccChHHHHH
Q 021278 74 LGFKNPAFVGRSAIRGYSDFKGS--HGFEPNFLQFFG----KGLRSGFIPCDDQTIYWFFTWTSSSQDKELEDHSAELKQ 147 (315)
Q Consensus 74 l~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~----~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (315)
++..... ...++...+..+.. ...+....++++ ++++.|+||..+. ....+..... ..+...+.+
T Consensus 205 lg~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~p~~Y~WifP~g~~-~~VG~g~~~~------~~~~~~~~~ 275 (450)
T PLN00093 205 IDAGDYD--YAIAFQERIKIPDDKMEYYEDLAEMYVGDDVSPDFYGWVFPKCDH-VAVGTGTVVN------KPAIKKYQR 275 (450)
T ss_pred hCCCCcc--eeEEEEEEEeCChhhccccCCeEEEEeCCCCCCCceEEEEECCCc-EEEEEEEccC------CCChHHHHH
Confidence 9876322 22333333333321 111223345554 4578899999853 3333322111 112233333
Q ss_pred HHHHHhcCCChHHHHHHHcCCCcceeeccccccCcccccccCcCCCcEEEeccCCCCCCCCCccchhhhhhHHHHHHHHH
Q 021278 148 FVLGKLHDLPAQVKAVIEKTPLDSIISSRLQYRQPQEVLWGNISRGSVCVAGDALHPMTPDIGQGGCAALEDGIVLARCI 227 (315)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~LiGDAAh~~~P~~G~G~~~al~da~~La~~l 227 (315)
.+.+.+. ..+...+.......+++... ..+|..+|++|||||||.++|++|+|++.||.++..+++.+
T Consensus 276 ~l~~~~~-------~~l~~~~~~~~~~~~ip~~~-----~~~~~~~~vlLvGDAAg~v~P~tGeGI~~Am~sg~~AAe~i 343 (450)
T PLN00093 276 ATRNRAK-------DKIAGGKIIRVEAHPIPEHP-----RPRRVRGRVALVGDAAGYVTKCSGEGIYFAAKSGRMCAEAI 343 (450)
T ss_pred HHHHHhh-------hhcCCCeEEEEEEEEccccc-----ccceeCCCcEEEeccccCCCccccccHHHHHHHHHHHHHHH
Confidence 4433221 11111111122334443322 23578899999999999999999999999999999999999
Q ss_pred HHHHhccCCCCCCchhhhhHHHHHHHHHHHHhhhhhHHHHHHHHHHhhhhhccCchHHHHH
Q 021278 228 NEALKTKQGVGEEDEEEFNKRVEMGLKRYAKERRWRCFELISIAYLVGSIQQSDGKILNFL 288 (315)
Q Consensus 228 ~~~~~~~~~~~~~~~~~s~~~~~~~l~~Y~~~r~~~~~~~~~~s~~~~~~~~~~~~~~~~~ 288 (315)
.+++... +.+.....|+.|++.++......+..+..+..++..+++....+
T Consensus 344 ~~~~~~g----------~~~~s~~~L~~Y~~~~~~~~g~~~~~~~~l~~~~~~~~~~~~~~ 394 (450)
T PLN00093 344 VEGSENG----------TRMVDEADLREYLRKWDKKYWPTYKVLDILQKVFYRSNPAREAF 394 (450)
T ss_pred HHHHhcC----------CCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHH
Confidence 9877641 00123467899999999999999999999999987765554433
No 46
>TIGR02023 BchP-ChlP geranylgeranyl reductase. This model represents a group of geranylgeranyl reductases specific for the biosyntheses of bacteriochlorophyll and chlorophyll. It is unclear whether the processes of isoprenoid ligation to the chlorin ring and reduction of the geranylgeranyl chain to a phytyl chain are necessarily ordered the same way in all species (see introduction to ).
Probab=99.93 E-value=2e-23 Score=189.58 Aligned_cols=239 Identities=18% Similarity=0.171 Sum_probs=159.0
Q ss_pred eeeHHHHHHHHHhhC--CCCcEEecceEEEEEeeCCeeEEEecC------C--CEEeecEEEecCCCchhhhhhhCCCCC
Q 021278 10 CVRRKLLLETLAKEL--PSGTIRYSSQVVSIEESGHFKLLHLAD------G--TILKTKVLIGCDGVNSIVAKWLGFKNP 79 (315)
Q Consensus 10 ~i~R~~L~~~L~~~~--~~~~i~~~~~v~~~~~~~~~~~v~~~~------g--~~~~ad~vVgADG~~S~vr~~l~~~~~ 79 (315)
.++|..|++.|.+++ .+++++.+ +|+++..+++++.|++.+ + .+++||+||||||.+|.+|+.++.+..
T Consensus 88 ~~~r~~fd~~L~~~a~~~G~~v~~~-~v~~v~~~~~~~~v~~~~~~~~~~~~~~~i~a~~VI~AdG~~S~v~r~lg~~~~ 166 (388)
T TIGR02023 88 MVRREVFDSYLRERAQKAGAELIHG-LFLKLERDRDGVTLTYRTPKKGAGGEKGSVEADVVIGADGANSPVAKELGLPKN 166 (388)
T ss_pred eeeHHHHHHHHHHHHHhCCCEEEee-EEEEEEEcCCeEEEEEEeccccCCCcceEEEeCEEEECCCCCcHHHHHcCCCCC
Confidence 699999999999986 35888765 699998888888887764 2 379999999999999999999987632
Q ss_pred ccccceEEEeeeecCCC-C-CCCCceEEEec----CCeEEEEEecCCCeEEEEEEeeCCCCCcccccChHHHHHHHHHHh
Q 021278 80 AFVGRSAIRGYSDFKGS-H-GFEPNFLQFFG----KGLRSGFIPCDDQTIYWFFTWTSSSQDKELEDHSAELKQFVLGKL 153 (315)
Q Consensus 80 ~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~----~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (315)
.. ...++...+..+.. . ..+....++++ ++++.+++|..+. ....... .. ...+.+++.+.+.+.+
T Consensus 167 ~~-~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~y~wv~P~~~~-~~vg~~~-~~-----~~~~~~~~~~~l~~~~ 238 (388)
T TIGR02023 167 LP-RVIAYQERIKLPDDKMAYYEELADVYYGGEVSPDFYGWVFPKGDH-IAVGTGT-GT-----HGFDAKQLQANLRRRA 238 (388)
T ss_pred Cc-EEEEEEEEecCCchhcccCCCeEEEEECCCcCCCceEEEeeCCCe-eEEeEEE-CC-----CCCCHHHHHHHHHHhh
Confidence 21 22334333332221 1 11222334433 4578889999753 3332221 11 1123444545555443
Q ss_pred cCCChHHHHHHHcCCCcceeeccccccCcccccccCcCCCcEEEeccCCCCCCCCCccchhhhhhHHHHHHHHHHHHHhc
Q 021278 154 HDLPAQVKAVIEKTPLDSIISSRLQYRQPQEVLWGNISRGSVCVAGDALHPMTPDIGQGGCAALEDGIVLARCINEALKT 233 (315)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~LiGDAAh~~~P~~G~G~~~al~da~~La~~l~~~~~~ 233 (315)
. +. ..+.......+++.. + .++|..++++|||||||.++|++|+|+++||.++..+++.|.+++..
T Consensus 239 ~-~~--------~~~~~~~~~~~ip~~-~----~~~~~~~~v~lvGDAAg~v~P~tG~GI~~A~~sg~~aa~~i~~~l~~ 304 (388)
T TIGR02023 239 G-LD--------GGQTIRREAAPIPMK-P----RPRWDFGRAMLVGDAAGLVTPASGEGIYFAMKSGQMAAQAIAEYLQN 304 (388)
T ss_pred C-CC--------CceEeeeeeEecccc-c----cccccCCCEEEEeccccCcCCcccccHHHHHHHHHHHHHHHHHHHhc
Confidence 2 10 000001111222221 1 23578899999999999999999999999999999999999998764
Q ss_pred cCCCCCCchhhhhHHHHHHHHHHHHhhhhhHHHHHHHHHHhhhhhccCchHH
Q 021278 234 KQGVGEEDEEEFNKRVEMGLKRYAKERRWRCFELISIAYLVGSIQQSDGKIL 285 (315)
Q Consensus 234 ~~~~~~~~~~~s~~~~~~~l~~Y~~~r~~~~~~~~~~s~~~~~~~~~~~~~~ 285 (315)
. ..+.|+.|++.++......+...+....++...+...
T Consensus 305 ~--------------~~~~L~~Y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 342 (388)
T TIGR02023 305 G--------------DATDLRHYERKFMKLYGTTFRVLRVLQMVYYRSDRRR 342 (388)
T ss_pred C--------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHH
Confidence 1 2467999999999999888888888877775444333
No 47
>PF08491 SE: Squalene epoxidase; InterPro: IPR013698 This domain is found in squalene epoxidase (SE) and related proteins which are found in taxonomically diverse groups of eukaryotes and also in bacteria. SE was first cloned from Saccharomyces cerevisiae (Baker's yeast) where it was named ERG1. It contains a putative FAD binding site and is a key enzyme in the sterol biosynthetic pathway []. Putative transmembrane regions are found to the protein's C terminus. ; GO: 0004506 squalene monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process, 0016021 integral to membrane
Probab=99.93 E-value=1.3e-23 Score=175.68 Aligned_cols=238 Identities=19% Similarity=0.134 Sum_probs=178.1
Q ss_pred ecEEEecCCCchhhhhhhCCCCCccccceEEEeeeecCCCCCCCCceEEEecCCeEEEEEecCCCeEEEEEEeeCCCCCc
Q 021278 57 TKVLIGCDGVNSIVAKWLGFKNPAFVGRSAIRGYSDFKGSHGFEPNFLQFFGKGLRSGFIPCDDQTIYWFFTWTSSSQDK 136 (315)
Q Consensus 57 ad~vVgADG~~S~vr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~ 136 (315)
|.++|.|||..|..|+.+....+ .....++|.+-.....+.+...++++++...+.+|+++.++.+..+-+..+..+
T Consensus 2 A~LtivaDG~~S~fRk~l~~~~~--~v~S~fvGl~l~~~~lp~~~~ghvil~~~~pil~YqI~~~etR~Lvdvp~~k~P- 78 (276)
T PF08491_consen 2 APLTIVADGCFSKFRKELSDNKP--QVRSYFVGLILKDAPLPKPNHGHVILGKPGPILLYQISSNETRVLVDVPGPKLP- 78 (276)
T ss_pred CCEEEEecCCchHHHHhhcCCCC--ceeeeEEEEEEcCCCCCCCCceEEEEcCCCcEEEEEcCCCceEEEEEeCCCccC-
Confidence 78999999999999999973333 334455565555555566777899999999999999999999888877544222
Q ss_pred ccccChHHHHHHHHHHhc-CCChHHHHHHHc-CCCcceeeccccccCcccccccCcCCCcEEEeccCCCCCCCCCccchh
Q 021278 137 ELEDHSAELKQFVLGKLH-DLPAQVKAVIEK-TPLDSIISSRLQYRQPQEVLWGNISRGSVCVAGDALHPMTPDIGQGGC 214 (315)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~LiGDAAh~~~P~~G~G~~ 214 (315)
..+..++++.+++... .+++.++..+.. .+.+.++..|....++. .....+++++|||+++.||.+|+||+
T Consensus 79 --~~~~g~l~~yl~~~v~P~LP~~lr~~f~~al~~~rirsMPn~~lp~~-----~~~~~G~vllGDA~nmrHPLTGgGMT 151 (276)
T PF08491_consen 79 --SVSNGELKEYLREVVAPQLPEELRPSFEKALEDGRIRSMPNSFLPAS-----PNWKPGVVLLGDAANMRHPLTGGGMT 151 (276)
T ss_pred --CccchHHHHHHHHHHHhhchHHHHHHHHHHhccCCcceecccccCCC-----CCCCCCEEEEehhhcCcCCccccchh
Confidence 2234466677766543 556666654332 33334555555444443 34568999999999999999999999
Q ss_pred hhhhHHHHHHHHHHHHHhccCCCCCCchhhhhHHHHHHHHHHHHhhhhhHHHHHHHHHHhhhhhccCchHHHHHHHHHHH
Q 021278 215 AALEDGIVLARCINEALKTKQGVGEEDEEEFNKRVEMGLKRYAKERRWRCFELISIAYLVGSIQQSDGKILNFLRDKILA 294 (315)
Q Consensus 215 ~al~da~~La~~l~~~~~~~~~~~~~~~~~s~~~~~~~l~~Y~~~r~~~~~~~~~~s~~~~~~~~~~~~~~~~~r~~~l~ 294 (315)
.|+.|+..|++.|...- +-...+...++++.|..+|++....+.-++..+..+|..++.....+|+.+++
T Consensus 152 VAl~Dv~lL~~lL~~~~----------dl~d~~~v~~~l~~f~~~Rk~~~s~iNiLA~aLY~lF~a~~~~l~~Lr~gcf~ 221 (276)
T PF08491_consen 152 VALNDVVLLRDLLSPIP----------DLSDTKAVLEALKKFHWKRKPLSSVINILAQALYSLFAADDDYLKALRQGCFK 221 (276)
T ss_pred hHHHHHHHHHHHHhhhc----------CcccHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 99999999999998860 11114567899999999999999999999999999999999999999999999
Q ss_pred HHHHh--hhcccccccCCCCcC
Q 021278 295 SFLVG--LLLKKADFDCGNLTS 314 (315)
Q Consensus 295 ~~~~~--~~~~~~~~~~~~~~~ 314 (315)
.+... ..........|..|+
T Consensus 222 Yf~~GG~~~~gpv~LLsgl~p~ 243 (276)
T PF08491_consen 222 YFQLGGECVSGPVALLSGLNPR 243 (276)
T ss_pred HHHcCCCCCcchHHHhccCCCC
Confidence 87765 455555555555553
No 48
>TIGR02028 ChlP geranylgeranyl reductase. This model represents the reductase which acts reduces the geranylgeranyl group to the phytyl group in the side chain of chlorophyll. It is unclear whether the enzyme has a preference for acting before or after the attachment of the side chain to chlorophyllide a by chlorophyll synthase. This clade is restricted to plants and cyanobacteria to separate it from the homologues which act in the biosynthesis of bacteriochlorophyll.
Probab=99.92 E-value=3.2e-23 Score=188.37 Aligned_cols=249 Identities=17% Similarity=0.123 Sum_probs=158.8
Q ss_pred eeeeHHHHHHHHHhhC--CCCcEEecceEEEEEee---CCeeEEEec--C-----C--CEEeecEEEecCCCchhhhhhh
Q 021278 9 RCVRRKLLLETLAKEL--PSGTIRYSSQVVSIEES---GHFKLLHLA--D-----G--TILKTKVLIGCDGVNSIVAKWL 74 (315)
Q Consensus 9 ~~i~R~~L~~~L~~~~--~~~~i~~~~~v~~~~~~---~~~~~v~~~--~-----g--~~~~ad~vVgADG~~S~vr~~l 74 (315)
..++|..|++.|.+++ .+++++.++ +++++.. ++.+.|++. + | .+++||+||||||.+|.||+.+
T Consensus 88 ~~v~R~~~d~~L~~~a~~~G~~v~~~~-~~~i~~~~~~~~~~~v~~~~~~~~~~~g~~~~i~a~~VIgADG~~S~v~~~~ 166 (398)
T TIGR02028 88 GMLRREVLDSFLRRRAADAGATLINGL-VTKLSLPADADDPYTLHYISSDSGGPSGTRCTLEVDAVIGADGANSRVAKEI 166 (398)
T ss_pred eeeeHHHHHHHHHHHHHHCCcEEEcce-EEEEEeccCCCceEEEEEeeccccccCCCccEEEeCEEEECCCcchHHHHHh
Confidence 4699999999999987 458998875 7776532 334555542 2 3 3799999999999999999999
Q ss_pred CCCCCccccceEEEeeeecCCCC-CC-CCceEEEec----CCeEEEEEecCCCeEEEEEEeeCCCCCcccccChHHHHHH
Q 021278 75 GFKNPAFVGRSAIRGYSDFKGSH-GF-EPNFLQFFG----KGLRSGFIPCDDQTIYWFFTWTSSSQDKELEDHSAELKQF 148 (315)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~----~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (315)
+.... .....+...+..+... .. +....++++ ++++.|+||..+. ....+... . .....+.+.+.
T Consensus 167 g~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~p~gY~WifP~~~~-~~VG~g~~-~-----~~~~~~~~~~~ 237 (398)
T TIGR02028 167 DAGDY--SYAIAFQERIRLPDEKMAYYDDLAEMYVGDDVSPDFYGWVFPKCDH-VAVGTGTV-A-----AKPEIKRLQSG 237 (398)
T ss_pred CCCCc--ceEEEEEEEeeCChhhcccCCCeEEEEeCCCCCCCceEEEEECCCe-EEEEEEeC-C-----CCccHHHHHHh
Confidence 87532 1223333333333221 11 223444554 4578999999853 33333211 1 01112223222
Q ss_pred HHHHhcCCChHHHHHHHcCCCcceeeccccccCcccccccCcCCCcEEEeccCCCCCCCCCccchhhhhhHHHHHHHHHH
Q 021278 149 VLGKLHDLPAQVKAVIEKTPLDSIISSRLQYRQPQEVLWGNISRGSVCVAGDALHPMTPDIGQGGCAALEDGIVLARCIN 228 (315)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~LiGDAAh~~~P~~G~G~~~al~da~~La~~l~ 228 (315)
+.... ...+...+...+...+++... .+++..+|++|||||||.++|++|+||++||.++..+++.+.
T Consensus 238 l~~~~-------~~~~~~~~~~~~~~~~ip~~~-----~~~~~~~~~llvGDAAg~v~P~tGeGI~~A~~sg~~aa~~i~ 305 (398)
T TIGR02028 238 IRARA-------AGKVAGGRIIRVEAHPIPEHP-----RPRRVVGRVALVGDAAGYVTKCSGEGIYFAAKSGRMCAEAIV 305 (398)
T ss_pred hhhhh-------hhccCCCcEEEEEEEeccccc-----cccEECCCEEEEEcCCCCCCcccccchHHHHHHHHHHHHHHH
Confidence 22110 011111111123334443322 235778999999999999999999999999999999999999
Q ss_pred HHHhccCCCCCCchhhhhHHHHHHHHHHHHhhhhhHHHHHHHHHHhhhhhccCchHHHHHH
Q 021278 229 EALKTKQGVGEEDEEEFNKRVEMGLKRYAKERRWRCFELISIAYLVGSIQQSDGKILNFLR 289 (315)
Q Consensus 229 ~~~~~~~~~~~~~~~~s~~~~~~~l~~Y~~~r~~~~~~~~~~s~~~~~~~~~~~~~~~~~r 289 (315)
+++... . .......|+.|++..+......+..+..+.+++..++.....+.
T Consensus 306 ~~~~~~----~------~~~~~~~l~~Y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 356 (398)
T TIGR02028 306 EESRLG----G------AVTEEGDLAGYLRRWDKEYRPTYRVLDLLQRVFYRSNAGREAFV 356 (398)
T ss_pred HHHhcC----C------CcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHH
Confidence 987642 0 00245679999999999999999999999998876554444443
No 49
>PRK11445 putative oxidoreductase; Provisional
Probab=99.92 E-value=1.5e-23 Score=187.71 Aligned_cols=245 Identities=20% Similarity=0.127 Sum_probs=148.5
Q ss_pred cceeeeHHHHHHHHHhhC-CCCcEEecceEEEEEeeCCeeEEEe-cCCC--EEeecEEEecCCCchhhhhhhCCCCCccc
Q 021278 7 EMRCVRRKLLLETLAKEL-PSGTIRYSSQVVSIEESGHFKLLHL-ADGT--ILKTKVLIGCDGVNSIVAKWLGFKNPAFV 82 (315)
Q Consensus 7 ~~~~i~R~~L~~~L~~~~-~~~~i~~~~~v~~~~~~~~~~~v~~-~~g~--~~~ad~vVgADG~~S~vr~~l~~~~~~~~ 82 (315)
..+.++|..|++.|.+.+ ++++++++++|++++.+++++.|.+ ++|+ +++||+||+|||.+|.+|+.++.... ..
T Consensus 92 ~~~~i~R~~~~~~L~~~~~~gv~v~~~~~v~~i~~~~~~~~v~~~~~g~~~~i~a~~vV~AdG~~S~vr~~l~~~~~-~~ 170 (351)
T PRK11445 92 SYINIDRHKFDLWLKSLIPASVEVYHNSLCRKIWREDDGYHVIFRADGWEQHITARYLVGADGANSMVRRHLYPDHQ-IR 170 (351)
T ss_pred CcccccHHHHHHHHHHHHhcCCEEEcCCEEEEEEEcCCEEEEEEecCCcEEEEEeCEEEECCCCCcHHhHHhcCCCc-hh
Confidence 446799999999999865 4599999999999998888888876 5665 79999999999999999999865422 22
Q ss_pred cceEEEeeeecCCCCCCCCceEEEec---CCeEEEEEecCCCeEEEEEEeeCCCCCcccccChHHHHHHHHHHhcCCChH
Q 021278 83 GRSAIRGYSDFKGSHGFEPNFLQFFG---KGLRSGFIPCDDQTIYWFFTWTSSSQDKELEDHSAELKQFVLGKLHDLPAQ 159 (315)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (315)
.+.++..++......+ .+..+++ ...+.+.+|..+... ....+. . .+..+..+.+.+.+......
T Consensus 171 ~~~~~~~~~~~~~~~~---~~~~~f~~~~~~~~~W~~p~~~~~~-~g~~~~-~-------~~~~~~~~~l~~~l~~~~~~ 238 (351)
T PRK11445 171 KYVAIQQWFAEKHPVP---FYSCIFDNEITDCYSWSISKDGYFI-FGGAYP-M-------KDGRERFETLKEKLSAFGFQ 238 (351)
T ss_pred hEEEEEEEecCCCCCC---CcceEEeccCCCceEEEeCCCCcEE-eccccc-c-------cchHHHHHHHHHHHHhcccc
Confidence 3334443333222211 1112222 245667788755322 111111 0 01111222333332222211
Q ss_pred HHHHHHcCCCcceeeccccccCcccccccCcCCCcEEEeccCCCCCCCCCccchhhhhhHHHHHHHHHHHHHhccCCCCC
Q 021278 160 VKAVIEKTPLDSIISSRLQYRQPQEVLWGNISRGSVCVAGDALHPMTPDIGQGGCAALEDGIVLARCINEALKTKQGVGE 239 (315)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~LiGDAAh~~~P~~G~G~~~al~da~~La~~l~~~~~~~~~~~~ 239 (315)
..+.+... ....+. +.......+.++|++|||||||.++|++|+|+++||+|+..|+++|.+.
T Consensus 239 ~~~~~~~~-----~~~~~~---~~~~~~~~~~~~~vvlVGDAAg~i~P~tG~Gi~~al~sa~~la~~l~~~--------- 301 (351)
T PRK11445 239 FGKPVKTE-----ACTVLR---PSRWQDFVCGKDNAFLIGEAAGFISPSSLEGISYALDSARILSEVLNKQ--------- 301 (351)
T ss_pred cccccccc-----cccccC---cccccccccCCCCEEEEEcccCccCCccCccHHHHHHhHHHHHHHHHhc---------
Confidence 11111110 001110 0000000234689999999999999999999999999999999999763
Q ss_pred CchhhhhHHHHHHHHHHHHhhhhhHHHHHHHHHHhhhhhccCchHHHHHHHHHHHHH
Q 021278 240 EDEEEFNKRVEMGLKRYAKERRWRCFELISIAYLVGSIQQSDGKILNFLRDKILASF 296 (315)
Q Consensus 240 ~~~~~s~~~~~~~l~~Y~~~r~~~~~~~~~~s~~~~~~~~~~~~~~~~~r~~~l~~~ 296 (315)
.+..++.|++.++.-...+ +.+.+-.+.-...++|.++|+.-
T Consensus 302 ---------~~~~~~~y~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~ 343 (351)
T PRK11445 302 ---------PEKLNTAYWRKTRKLRLKL------FGKILKSPFMYNPALRKLIMRSG 343 (351)
T ss_pred ---------ccchHHHHHHHHHHHHHHH------HHHHhcChhhhhHHHHHHHHHhc
Confidence 2446889988776655333 33334444445667788877753
No 50
>TIGR02032 GG-red-SF geranylgeranyl reductase family. This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates.
Probab=99.92 E-value=1.2e-23 Score=183.95 Aligned_cols=206 Identities=21% Similarity=0.221 Sum_probs=137.5
Q ss_pred ccceeeeHHHHHHHHHhhCC--CCcEEecceEEEEEeeCCeeEEEecCC-CEEeecEEEecCCCchhhhhhhCCCCCccc
Q 021278 6 HEMRCVRRKLLLETLAKELP--SGTIRYSSQVVSIEESGHFKLLHLADG-TILKTKVLIGCDGVNSIVAKWLGFKNPAFV 82 (315)
Q Consensus 6 ~~~~~i~R~~L~~~L~~~~~--~~~i~~~~~v~~~~~~~~~~~v~~~~g-~~~~ad~vVgADG~~S~vr~~l~~~~~~~~ 82 (315)
...+.++|..|.+.|.+.+. +++++++++|+++..+++++.+.+.++ .+++||+||+|||.+|.+|+.++.......
T Consensus 83 ~~~~~i~r~~l~~~l~~~~~~~gv~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~a~~vv~a~G~~s~~~~~~~~~~~~~~ 162 (295)
T TIGR02032 83 ELAYVIDRDAFDEQLAERAQEAGAELRLGTTVLDVEIHDDRVVVIVRGGEGTVTAKIVIGADGSRSIVAKKLGLRKEPRE 162 (295)
T ss_pred CcEEEEEHHHHHHHHHHHHHHcCCEEEeCcEEeeEEEeCCEEEEEEcCccEEEEeCEEEECCCcchHHHHhcCCCCCCcc
Confidence 34578999999999999874 489999999999998888877777654 589999999999999999998876543222
Q ss_pred cceEEEeeeecCCCCCCCCceEEEec----CCeEEEEEecCCCeEEEEEEeeCCCCCcccccChHHHHHHHHHHhcCCCh
Q 021278 83 GRSAIRGYSDFKGSHGFEPNFLQFFG----KGLRSGFIPCDDQTIYWFFTWTSSSQDKELEDHSAELKQFVLGKLHDLPA 158 (315)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (315)
....+.+.+..+..........++.+ ++.+.+++|.+++...+.+...... ...+.++..+.+.+.+..
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~v~~~~~~~~----~~~~~~~~~~~~~~~~~~--- 235 (295)
T TIGR02032 163 LGVAARAEVEMPDEEVDEDFVEVYIDRGISPGGYGWVFPKGDGTANVGVGSRSAE----EGEDLKKYLKDFLARRPE--- 235 (295)
T ss_pred eeeEEEEEEecCCcccCcceEEEEcCCCcCCCceEEEEeCCCCeEEEeeeeccCC----CCCCHHHHHHHHHHhCcc---
Confidence 22344444444432222233444443 3577889999988755544432221 122333333444433221
Q ss_pred HHHHHHHcCCCcceeeccccccCcccccccCcCCCcEEEeccCCCCCCCCCccchhhhhhHHHHHHHHH
Q 021278 159 QVKAVIEKTPLDSIISSRLQYRQPQEVLWGNISRGSVCVAGDALHPMTPDIGQGGCAALEDGIVLARCI 227 (315)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~LiGDAAh~~~P~~G~G~~~al~da~~La~~l 227 (315)
+...+......+++... ....+|.++|++|+|||||+++|+.|||+++||+||..++++|
T Consensus 236 -----l~~~~~~~~~~~~~~~~----~~~~~~~~~~v~liGDAA~~~~P~~g~G~~~a~~~a~~aa~~~ 295 (295)
T TIGR02032 236 -----LKDAETVEVIGAPIPIG----RPDDKTVRGNVLLVGDAAGHVKPLTGEGIYYAMRSGDVAAEVI 295 (295)
T ss_pred -----cccCcEEeeeceeeccC----CCCCccccCCEEEEecccCCCCCccCCcHHHHHHHHHHHHhhC
Confidence 11111111122222222 2234788999999999999999999999999999999999875
No 51
>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed
Probab=99.92 E-value=3.2e-24 Score=208.91 Aligned_cols=254 Identities=19% Similarity=0.149 Sum_probs=162.8
Q ss_pred CccceeeeHHHHHHHHHhhCC--CCcEEecceEEEEEeeCCeeEEEecCCCEEeecEEEecCCCchhhhhhhCCC--CCc
Q 021278 5 EHEMRCVRRKLLLETLAKELP--SGTIRYSSQVVSIEESGHFKLLHLADGTILKTKVLIGCDGVNSIVAKWLGFK--NPA 80 (315)
Q Consensus 5 ~~~~~~i~R~~L~~~L~~~~~--~~~i~~~~~v~~~~~~~~~~~v~~~~g~~~~ad~vVgADG~~S~vr~~l~~~--~~~ 80 (315)
+..+..++|..|.+.|.+++. ++++++++++++++.. ..++|+||||||.+|.+|+.++.. ...
T Consensus 88 g~~~~~i~R~~L~~~L~e~a~~~GV~i~~g~~v~~i~~~------------~~~~D~VVgADG~~S~vR~~~~~~~~~~~ 155 (765)
T PRK08255 88 GHGFAGIGRKRLLNILQARCEELGVKLVFETEVPDDQAL------------AADADLVIASDGLNSRIRTRYADTFQPDI 155 (765)
T ss_pred CeeEecCCHHHHHHHHHHHHHHcCCEEEeCCccCchhhh------------hcCCCEEEEcCCCCHHHHHHHHhhcCCce
Confidence 334567999999999999874 4899999998876421 247999999999999999977321 111
Q ss_pred ccc--ceEEEeeeecCCCCCCCCceE-EEecCCe-EEEEEecCCCeEEEEEEeeCCCC--CcccccChHHHHHHHHHHhc
Q 021278 81 FVG--RSAIRGYSDFKGSHGFEPNFL-QFFGKGL-RSGFIPCDDQTIYWFFTWTSSSQ--DKELEDHSAELKQFVLGKLH 154 (315)
Q Consensus 81 ~~~--~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-~~~~~p~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~ 154 (315)
... .+.+.+...... . ..+. .....+. ....||..++..+|++....+.. ......+.++..+.+.+.|.
T Consensus 156 ~~~~~~~~w~g~~~~~~--~--~~~~~~~~~~g~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~f~ 231 (765)
T PRK08255 156 DTRRCRFVWLGTHKVFD--A--FTFAFEETEHGWFQAHAYRFDDDTSTFIVETPEEVWRAAGLDEMSQEESIAFCEKLFA 231 (765)
T ss_pred ecCCCceEEecCCCccc--c--eeEEEEecCCceEEEEEeeeCCCCcEEEEEcCHHHHHhcCCccCCHHHHHHHHHHHhH
Confidence 111 122222211100 0 0000 1112221 23457887777666655422110 01122356677888888888
Q ss_pred CCChHHHHHHHcCCCcceeeccccccCcccccccCcCCCc----EEEeccCCCCCCCCCccchhhhhhHHHHHHHHHHHH
Q 021278 155 DLPAQVKAVIEKTPLDSIISSRLQYRQPQEVLWGNISRGS----VCVAGDALHPMTPDIGQGGCAALEDGIVLARCINEA 230 (315)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----v~LiGDAAh~~~P~~G~G~~~al~da~~La~~l~~~ 230 (315)
+|.+... ++..........+.... ...+++|+.+| |+|+|||||+++|+.|||+|+||+||..|+++|...
T Consensus 232 ~~~~~~~-li~~~~~~~~~~w~~~~----~~~~~~w~~gr~~~~v~liGDAAH~~~P~~GqG~~~aieDa~~La~~L~~~ 306 (765)
T PRK08255 232 DYLDGHP-LMSNASHLRGSAWINFP----RVVCERWVHWNRRVPVVLMGDAAHTAHFSIGSGTKLALEDAIELARCLHEH 306 (765)
T ss_pred HhcCCCc-ccccccccccceeeecc----eeccCCCccCCCcccEEEEEcCcccCCCCcchhHHHHHHHHHHHHHHHHHc
Confidence 7765432 33222110111111111 12245899999 999999999999999999999999999999999763
Q ss_pred HhccCCCCCCchhhhhHHHHHHHHHHHHhhhhhHHHHHHHHHHhhhhhccCch-----HHHHHHHHHHH
Q 021278 231 LKTKQGVGEEDEEEFNKRVEMGLKRYAKERRWRCFELISIAYLVGSIQQSDGK-----ILNFLRDKILA 294 (315)
Q Consensus 231 ~~~~~~~~~~~~~~s~~~~~~~l~~Y~~~r~~~~~~~~~~s~~~~~~~~~~~~-----~~~~~r~~~l~ 294 (315)
. ..++.+|+.|++.|+++++.+++.|+.+..++...++ ...+.++...+
T Consensus 307 ~---------------~~~~~al~~ye~~R~~r~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~r 360 (765)
T PRK08255 307 P---------------GDLPAALAAYEEERRVEVLRIQNAARNSTEWFENVERYAGLEPEQFAYSLLTR 360 (765)
T ss_pred c---------------ccHHHHHHHHHHHHHHHHHHHHHHHHHhCceeeecchhhCCCHHHHHHHHHHh
Confidence 1 1578999999999999999999999998888865433 33444444444
No 52
>COG0644 FixC Dehydrogenases (flavoproteins) [Energy production and conversion]
Probab=99.88 E-value=1.6e-20 Score=170.72 Aligned_cols=244 Identities=19% Similarity=0.150 Sum_probs=165.2
Q ss_pred ccceeeeHHHHHHHHHhhCC--CCcEEecceEEEEEeeCCeeEEEe-cCCCEEeecEEEecCCCchhhhhhhCCCCCc-c
Q 021278 6 HEMRCVRRKLLLETLAKELP--SGTIRYSSQVVSIEESGHFKLLHL-ADGTILKTKVLIGCDGVNSIVAKWLGFKNPA-F 81 (315)
Q Consensus 6 ~~~~~i~R~~L~~~L~~~~~--~~~i~~~~~v~~~~~~~~~~~v~~-~~g~~~~ad~vVgADG~~S~vr~~l~~~~~~-~ 81 (315)
...+.|+|..|+++|.+++. +++++.++++..+..+++++.+.. .++.+++|++||+|||.+|.+++.++..... .
T Consensus 87 ~~~y~v~R~~fd~~La~~A~~aGae~~~~~~~~~~~~~~~~~~~~~~~~~~e~~a~~vI~AdG~~s~l~~~lg~~~~~~~ 166 (396)
T COG0644 87 GEGYIVDRAKFDKWLAERAEEAGAELYPGTRVTGVIREDDGVVVGVRAGDDEVRAKVVIDADGVNSALARKLGLKDRKPE 166 (396)
T ss_pred CceEEEEhHHhhHHHHHHHHHcCCEEEeceEEEEEEEeCCcEEEEEEcCCEEEEcCEEEECCCcchHHHHHhCCCCCChh
Confidence 34789999999999999874 599999999999999988755444 4447999999999999999999999887221 1
Q ss_pred ccceEEEeeeecCCCCCCCCceEEE-----ecCCeEEEEEecCCCeEEEEEEeeCCCCCcccccChHHHHHHHHHHhcCC
Q 021278 82 VGRSAIRGYSDFKGSHGFEPNFLQF-----FGKGLRSGFIPCDDQTIYWFFTWTSSSQDKELEDHSAELKQFVLGKLHDL 156 (315)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (315)
....+..-.+..+ ........+ ...+++.++||..++.....+...... ....... +..+.+.+.
T Consensus 167 ~~~~~~~e~~~~~---~~~~~~~~~~~~~~~~~~Gy~wifP~~~~~~~VG~g~~~~~--~~~~~~~-~~l~~f~~~---- 236 (396)
T COG0644 167 DYAIGVKEVIEVP---DDGDVEEFLYGPLDVGPGGYGWIFPLGDGHANVGIGVLLDD--PSLSPFL-ELLERFKEH---- 236 (396)
T ss_pred heeEEeEEEEecC---CCCceEEEEecCCccCCCceEEEEECCCceEEEEEEEecCC--cCCCchH-HHHHHHHhC----
Confidence 2223333344444 111222222 245789999999999777776654443 1111111 222333322
Q ss_pred ChHHHHHHHcCCCcceeeccccccCcccccccC-cCCCcEEEeccCCCCCCCCCccchhhhhhHHHHHHHHHHHHHhccC
Q 021278 157 PAQVKAVIEKTPLDSIISSRLQYRQPQEVLWGN-ISRGSVCVAGDALHPMTPDIGQGGCAALEDGIVLARCINEALKTKQ 235 (315)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~LiGDAAh~~~P~~G~G~~~al~da~~La~~l~~~~~~~~ 235 (315)
++ ....+...+........++...+.. . ++.++++||||||.+++|++|+|+..||.+|..+++.|.++...
T Consensus 237 ~~-~~~~~~~~~~~~~~~~~ip~~g~~~----~~~~~~~~~lvGDAAg~v~p~~g~Gi~~A~~sg~~Aa~~i~~~~~~-- 309 (396)
T COG0644 237 PA-IRKLLLGGKILEYAAGGIPEGGPAS----RPLVGDGVLLVGDAAGFVNPLTGEGIRYAIKSGKLAAEAIAEALEG-- 309 (396)
T ss_pred cc-cchhccCCceEEEeeeecccCCcCC----CccccCCEEEEeccccCCCCcccCcHHHHHHHHHHHHHHHHHHHHc--
Confidence 11 1111111111222233333333222 3 67899999999999999999999999999999999999998775
Q ss_pred CCCCCchhhhhHHHHHHHHHHHHhhhhhHHHHHHHHHHhhhhhc
Q 021278 236 GVGEEDEEEFNKRVEMGLKRYAKERRWRCFELISIAYLVGSIQQ 279 (315)
Q Consensus 236 ~~~~~~~~~s~~~~~~~l~~Y~~~r~~~~~~~~~~s~~~~~~~~ 279 (315)
. ...|..|++..++...............+.
T Consensus 310 ------------~-~~~l~~Y~~~~~~~~~~~~~~~~~~~~~~~ 340 (396)
T COG0644 310 ------------G-EEALAEYERLLRKSLAREDLKSLRLLKLLL 340 (396)
T ss_pred ------------C-hhHHHHHHHHHHHHHHHHHHHHhhhhhhHH
Confidence 2 667888999988888777777766666655
No 53
>PRK10015 oxidoreductase; Provisional
Probab=99.88 E-value=1.5e-20 Score=172.35 Aligned_cols=254 Identities=14% Similarity=0.079 Sum_probs=156.6
Q ss_pred cceeeeHHHHHHHHHhhC--CCCcEEecceEEEEEeeCCeeEEEecCCCEEeecEEEecCCCchhhhhhhCCCCCcccc-
Q 021278 7 EMRCVRRKLLLETLAKEL--PSGTIRYSSQVVSIEESGHFKLLHLADGTILKTKVLIGCDGVNSIVAKWLGFKNPAFVG- 83 (315)
Q Consensus 7 ~~~~i~R~~L~~~L~~~~--~~~~i~~~~~v~~~~~~~~~~~v~~~~g~~~~ad~vVgADG~~S~vr~~l~~~~~~~~~- 83 (315)
..+.+.|..|+++|.+++ .+++++.+++|+++..+++++.+...++.+++||+||+|||.+|.+++.++........
T Consensus 101 ~~~~v~R~~fd~~L~~~a~~~Gv~i~~~~~V~~i~~~~~~v~~v~~~~~~i~A~~VI~AdG~~s~v~~~lg~~~~~~~~~ 180 (429)
T PRK10015 101 ASYTVLRNRLDPWLMEQAEQAGAQFIPGVRVDALVREGNKVTGVQAGDDILEANVVILADGVNSMLGRSLGMVPASDPHH 180 (429)
T ss_pred CceEeehhHHHHHHHHHHHHcCCEEECCcEEEEEEEeCCEEEEEEeCCeEEECCEEEEccCcchhhhcccCCCcCCCcCe
Confidence 468899999999999877 45999999999999877666654445567899999999999999999999775332211
Q ss_pred -ceEEEeeeecCCCC---CC-----CCceEEEec--CCe---EEEEEecCCCeEEEEEEeeCCCCCcccccChHHHHHHH
Q 021278 84 -RSAIRGYSDFKGSH---GF-----EPNFLQFFG--KGL---RSGFIPCDDQTIYWFFTWTSSSQDKELEDHSAELKQFV 149 (315)
Q Consensus 84 -~~~~~~~~~~~~~~---~~-----~~~~~~~~~--~~~---~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (315)
..++...+..+... .+ ...+.++.+ .++ ..++||. .+.+...+....... .....++.++.+.+
T Consensus 181 ~~~gvk~~~~~~~~~i~~~~~~~~~~g~~w~~~g~~~~g~~g~G~~~~~-~d~v~vGv~~~~~~~-~~~~~~~~~~l~~~ 258 (429)
T PRK10015 181 YAVGVKEVIGLTPEQINDRFNITGEEGAAWLFAGSPSDGLMGGGFLYTN-KDSISLGLVCGLGDI-AHAQKSVPQMLEDF 258 (429)
T ss_pred EEEEEEEEEeCCHHHhhHhhcCCCCCCeEEEecCccCCCCCCceEEEEc-CCcEEEEEEEehhhh-ccCCCCHHHHHHHH
Confidence 23333333332110 00 111112221 111 1223343 344444433322110 11223344443333
Q ss_pred HHHhcCCChHHHHHHHcCCCcceeeccccccCcccccccCcCCCcEEEeccCCCCCC--CCCccchhhhhhHHHHHHHHH
Q 021278 150 LGKLHDLPAQVKAVIEKTPLDSIISSRLQYRQPQEVLWGNISRGSVCVAGDALHPMT--PDIGQGGCAALEDGIVLARCI 227 (315)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~LiGDAAh~~~--P~~G~G~~~al~da~~La~~l 227 (315)
. ..+.+...+...+........++..... ..++.+.+++++|||||+.++ |++|+||+.||.++..+|+.+
T Consensus 259 ~-----~~p~~~~~~~~~~~~e~~~~~ip~gg~~--~~~~~~~~g~llvGDAAg~v~p~~~~g~Gi~~A~~SG~~AAe~i 331 (429)
T PRK10015 259 K-----QHPAIRPLISGGKLLEYSAHMVPEGGLA--MVPQLVNDGVMIVGDAAGFCLNLGFTVRGMDLAIASAQAAATTV 331 (429)
T ss_pred h-----hChHHHHHhcCCEEEEEeeEEcccCCcc--cCCccccCCeEEEecccccccccCccccchhHHHHHHHHHHHHH
Confidence 2 3455556654433222222222221110 123568999999999999998 569999999999999999999
Q ss_pred HHHHhccCCCCCCchhhhhHHHHHHHHHHHHhhhhh-HHHHHHHHHHhhhhhccC
Q 021278 228 NEALKTKQGVGEEDEEEFNKRVEMGLKRYAKERRWR-CFELISIAYLVGSIQQSD 281 (315)
Q Consensus 228 ~~~~~~~~~~~~~~~~~s~~~~~~~l~~Y~~~r~~~-~~~~~~~s~~~~~~~~~~ 281 (315)
.+++... +.....|+.|++..+.. +.+.....+.+..++.++
T Consensus 332 ~~a~~~~------------d~s~~~l~~Y~~~~~~~~~~~~l~~~~~~~~~~~~~ 374 (429)
T PRK10015 332 IAAKERA------------DFSASSLAQYKRELEQSCVMRDMQHFRKIPALMENP 374 (429)
T ss_pred HHHHhcC------------CCccccHHHHHHHHHHCHHHHHHHHHhChHhhhcCc
Confidence 9988752 23566789999988866 555567777777777655
No 54
>TIGR01790 carotene-cycl lycopene cyclase family protein. This family includes lycopene beta and epsilion cyclases (which form beta and delta carotene, respectively) from bacteria and plants as well as the plant capsanthin/capsorubin and neoxanthin cyclases which appear to have evolved from the plant lycopene cyclases. The plant lycopene epsilon cyclases also transform neurosporene to alpha zeacarotene.
Probab=99.86 E-value=1.3e-19 Score=164.90 Aligned_cols=240 Identities=16% Similarity=0.061 Sum_probs=147.6
Q ss_pred ccceeeeHHHHHHHHHhhCC--CCcEEecceEEEEEee-CCeeEEEecCCCEEeecEEEecCCCchhhhhhhCCCCCccc
Q 021278 6 HEMRCVRRKLLLETLAKELP--SGTIRYSSQVVSIEES-GHFKLLHLADGTILKTKVLIGCDGVNSIVAKWLGFKNPAFV 82 (315)
Q Consensus 6 ~~~~~i~R~~L~~~L~~~~~--~~~i~~~~~v~~~~~~-~~~~~v~~~~g~~~~ad~vVgADG~~S~vr~~l~~~~~~~~ 82 (315)
+....++|..|++.|.+.+. +++++ ..+|+.++.+ ++.+.|++.+|.+++|++||+|||.+|.+++..........
T Consensus 77 ~~~~~i~~~~l~~~l~~~~~~~gv~~~-~~~v~~i~~~~~~~~~v~~~~g~~~~a~~VI~A~G~~s~~~~~~~~~~~~~q 155 (388)
T TIGR01790 77 TAYGSVDSTRLHEELLQKCPEGGVLWL-ERKAIHAEADGVALSTVYCAGGQRIQARLVIDARGFGPLVQYVRFPLNVGFQ 155 (388)
T ss_pred CceeEEcHHHHHHHHHHHHHhcCcEEE-ccEEEEEEecCCceeEEEeCCCCEEEeCEEEECCCCchhcccccCCCCceEE
Confidence 34557999999999998774 36775 5688888877 55678888888899999999999999977643311111111
Q ss_pred cceEEEeeeecCCCCCCCCc-eEE-Ee-c--------CCe--EEEEEecCCCeEEEEEEeeCCCCCcccccChHHHHHHH
Q 021278 83 GRSAIRGYSDFKGSHGFEPN-FLQ-FF-G--------KGL--RSGFIPCDDQTIYWFFTWTSSSQDKELEDHSAELKQFV 149 (315)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~-~~~-~~-~--------~~~--~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (315)
......+..+.+...... ..+ +. . ... +.+.+|..++..++.... - ......+.+++++.+
T Consensus 156 --~~~G~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~f~~~lP~~~~~~~v~~~~--~--~~~~~~~~~~~~~~l 229 (388)
T TIGR01790 156 --VAYGVEARLSRPPHGPSSMVIMDARVDQLAAPELKGYRPTFLYAMPLGSTRVFIEETS--L--ADRPALPRDRLRQRI 229 (388)
T ss_pred --EEEEEEEEEcCCCCCCCceEEEeccccccccccccCCCCceEEEeecCCCeEEEEecc--c--cCCCCCCHHHHHHHH
Confidence 122222333321111111 111 11 1 112 677899988765332111 0 011223466777777
Q ss_pred HHHhcCCChHHHHHHHcCCCcceeeccccccCcccccccCcCCCcEEEeccCCCCCCCCCccchhhhhhHHHHHHHHHHH
Q 021278 150 LGKLHDLPAQVKAVIEKTPLDSIISSRLQYRQPQEVLWGNISRGSVCVAGDALHPMTPDIGQGGCAALEDGIVLARCINE 229 (315)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~LiGDAAh~~~P~~G~G~~~al~da~~La~~l~~ 229 (315)
.+.+........+++.. .....|+.... ++..+|+++||||||+++|++|+|++.|+++|..+++.|.+
T Consensus 230 ~~~~~~~g~~~~~i~~~----~~~~iP~~~~~-------~~~~~rv~liGdAAg~~~P~tG~Gi~~al~~a~~la~~l~~ 298 (388)
T TIGR01790 230 LARLNAQGWQIKTIEEE----EWGALPVGLPG-------PFLPQRVAAFGAAAGMVHPTTGYSVARALSDAPGLAAAIAQ 298 (388)
T ss_pred HHHHHHcCCeeeEEEee----eeEEEecccCC-------CccCCCeeeeechhcCcCCcccccHHHHHHHHHHHHHHHHH
Confidence 76665433221111111 11122222111 23688999999999999999999999999999999999999
Q ss_pred HHhccCCCCCCchhhhhHHHHHHHHHHHHhhhhhHHHHHHHHHHhhhh
Q 021278 230 ALKTKQGVGEEDEEEFNKRVEMGLKRYAKERRWRCFELISIAYLVGSI 277 (315)
Q Consensus 230 ~~~~~~~~~~~~~~~s~~~~~~~l~~Y~~~r~~~~~~~~~~s~~~~~~ 277 (315)
++.. ..+.+++.|++..+++..+..........+
T Consensus 299 ~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 332 (388)
T TIGR01790 299 ALCQ--------------SSELATAAWDGLWPTERRRQRYFRLLGRML 332 (388)
T ss_pred Hhcc--------------CHHHHHHHHHHhchHHHHHHHHHHHHHHHH
Confidence 8765 357888889877666666644443333333
No 55
>PRK10157 putative oxidoreductase FixC; Provisional
Probab=99.86 E-value=2.1e-19 Score=164.91 Aligned_cols=254 Identities=16% Similarity=0.114 Sum_probs=154.7
Q ss_pred ccceeeeHHHHHHHHHhhC--CCCcEEecceEEEEEeeCCeeEEEecCCCEEeecEEEecCCCchhhhhhhCCCCCcccc
Q 021278 6 HEMRCVRRKLLLETLAKEL--PSGTIRYSSQVVSIEESGHFKLLHLADGTILKTKVLIGCDGVNSIVAKWLGFKNPAFVG 83 (315)
Q Consensus 6 ~~~~~i~R~~L~~~L~~~~--~~~~i~~~~~v~~~~~~~~~~~v~~~~g~~~~ad~vVgADG~~S~vr~~l~~~~~~~~~ 83 (315)
...+.+.|..|+++|.+++ .+++++++++|+++..+++.+.+...++.+++||+||+|||.+|.+++.+|...+....
T Consensus 100 ~~~~~v~R~~fD~~L~~~a~~~Gv~i~~~~~V~~i~~~~g~v~~v~~~g~~i~A~~VI~A~G~~s~l~~~lgl~~~~~~~ 179 (428)
T PRK10157 100 QRSYSVLRSKFDAWLMEQAEEAGAQLITGIRVDNLVQRDGKVVGVEADGDVIEAKTVILADGVNSILAEKLGMAKRVKPT 179 (428)
T ss_pred CCceeeEHHHHHHHHHHHHHHCCCEEECCCEEEEEEEeCCEEEEEEcCCcEEECCEEEEEeCCCHHHHHHcCCCCCCCCc
Confidence 3467899999999999987 45999999999999887776655556778999999999999999999999876433333
Q ss_pred ceEE--EeeeecCCCC--------CCCCceEEEec---CC--eEEEEEecCCCeEEEEEEeeCCCCCcccccChHHHHHH
Q 021278 84 RSAI--RGYSDFKGSH--------GFEPNFLQFFG---KG--LRSGFIPCDDQTIYWFFTWTSSSQDKELEDHSAELKQF 148 (315)
Q Consensus 84 ~~~~--~~~~~~~~~~--------~~~~~~~~~~~---~~--~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (315)
..++ ...+..+... ..+....++.+ .+ +..++++. ++.+...+....+. ......++.++.+.
T Consensus 180 ~~av~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~g~~ggG~~~~~-~~~~svG~~~~~~~-~~~~~~~~~~~l~~ 257 (428)
T PRK10157 180 DVAVGVKELIELPKSVIEDRFQLQGNQGAACLFAGSPTDGLMGGGFLYTN-ENTLSLGLVCGLHH-LHDAKKSVPQMLED 257 (428)
T ss_pred EEEEEEEEEEEcCHHHHHHhhccCCCCCeEEEEEECCCCCCcCceeEEEc-CCeEEEEEEEehHH-hcccCCCHHHHHHH
Confidence 3333 2223332110 01111222322 11 01124443 33333333322211 11122334444333
Q ss_pred HHHHhcCCChHHHHHHHcCCCcceeeccccccCcccccccCcCCCcEEEeccCCCCCCC--CCccchhhhhhHHHHHHHH
Q 021278 149 VLGKLHDLPAQVKAVIEKTPLDSIISSRLQYRQPQEVLWGNISRGSVCVAGDALHPMTP--DIGQGGCAALEDGIVLARC 226 (315)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~LiGDAAh~~~P--~~G~G~~~al~da~~La~~ 226 (315)
+. . .+.+...+............++.... ...++.+.+++++|||||+.++| ++|+|++.||.++..+|+.
T Consensus 258 ~~----~-~p~v~~~~~~~~~~~~~~~~ip~~g~--~~~~~~~~~g~llvGDAAg~v~p~g~~g~Gi~~A~~SG~lAAea 330 (428)
T PRK10157 258 FK----Q-HPAVAPLIAGGKLVEYSAHVVPEAGI--NMLPELVGDGVLIAGDAAGMCMNLGFTIRGMDLAIAAGEAAAKT 330 (428)
T ss_pred HH----h-CchHHHHhCCCeEHHHHhhHhhcCCc--ccCCceecCCeEEEecccccccccCceeeeHHHHHHHHHHHHHH
Confidence 32 2 33444444332211121221211110 01224578999999999999998 6999999999999999999
Q ss_pred HHHHHhccCCCCCCchhhhhHHHHHHHHHHHHhhhhhHHHHHHHHHHhhhhhcc
Q 021278 227 INEALKTKQGVGEEDEEEFNKRVEMGLKRYAKERRWRCFELISIAYLVGSIQQS 280 (315)
Q Consensus 227 l~~~~~~~~~~~~~~~~~s~~~~~~~l~~Y~~~r~~~~~~~~~~s~~~~~~~~~ 280 (315)
+.+++.. ++.....|+.|++..+..+.......+....++..
T Consensus 331 i~~a~~~------------~~~s~~~l~~Y~~~l~~~~~~~l~~~~~~~~~~~~ 372 (428)
T PRK10157 331 VLSAMKS------------DDFSKQKLAEYRQHLESGPLRDMRMYQKLPAFLDN 372 (428)
T ss_pred HHHHHhc------------CCcchhhHHHHHHHHHHhHHHHHHHHhccHHHhcC
Confidence 9998876 23456689999988777775666666555555543
No 56
>KOG1298 consensus Squalene monooxygenase [Lipid transport and metabolism]
Probab=99.86 E-value=2.4e-19 Score=153.58 Aligned_cols=293 Identities=14% Similarity=0.074 Sum_probs=209.9
Q ss_pred CCCCccceeeeHHHHHHHHHhhC---CCCcEEecceEEEEEeeCC---eeEEEecCCC--EEeecEEEecCCCchhhhhh
Q 021278 2 FSGEHEMRCVRRKLLLETLAKEL---PSGTIRYSSQVVSIEESGH---FKLLHLADGT--ILKTKVLIGCDGVNSIVAKW 73 (315)
Q Consensus 2 ~~~~~~~~~i~R~~L~~~L~~~~---~~~~i~~~~~v~~~~~~~~---~~~v~~~~g~--~~~ad~vVgADG~~S~vr~~ 73 (315)
|...+..+.++...|.+.|++.+ |++++..|+ |.++-++++ ||+...+.|+ +..|.+-|.|||..|..||+
T Consensus 135 f~~d~~GrsFhnGRFvq~lR~ka~slpNV~~eeGt-V~sLlee~gvvkGV~yk~k~gee~~~~ApLTvVCDGcfSnlRrs 213 (509)
T KOG1298|consen 135 FPSDPSGRSFHNGRFVQRLRKKAASLPNVRLEEGT-VKSLLEEEGVVKGVTYKNKEGEEVEAFAPLTVVCDGCFSNLRRS 213 (509)
T ss_pred CCCCcccceeeccHHHHHHHHHHhcCCCeEEeeee-HHHHHhccCeEEeEEEecCCCceEEEecceEEEecchhHHHHHH
Confidence 34566788999999999999976 778888765 445544443 2444445554 56789999999999999999
Q ss_pred hCCCCCccccceEEEeeeecCCCCCCCCceEEEecCCeEEEEEecCCCeEEEEEEeeCCCCCcccccChHHHHHHHHHHh
Q 021278 74 LGFKNPAFVGRSAIRGYSDFKGSHGFEPNFLQFFGKGLRSGFIPCDDQTIYWFFTWTSSSQDKELEDHSAELKQFVLGKL 153 (315)
Q Consensus 74 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (315)
+..++-.. -...+.|.+-.....+.+...++.+++.....+||++..+.++.+.+..+.-+ +....+....+++..
T Consensus 214 L~~~~v~~-V~S~fVG~vl~N~~l~~p~hghvIL~~pspil~Y~ISStEvRcl~~v~g~~~P---si~~gem~~~mk~~v 289 (509)
T KOG1298|consen 214 LCDPKVEE-VPSYFVGLVLKNCRLPAPNHGHVILSKPSPILVYQISSTEVRCLVDVPGQKLP---SIANGEMATYMKESV 289 (509)
T ss_pred hcCCcccc-cchheeeeeecCCCCCCCCcceEEecCCCcEEEEEecchheEEEEecCcccCC---cccchhHHHHHHHhh
Confidence 95543221 12233444444444555677889999999999999999999998877554432 222334556666654
Q ss_pred c-CCChHHHHHHH-cCCCcceeeccccccCcccccccCcCCCcEEEeccCCCCCCCCCccchhhhhhHHHHHHHHHHHHH
Q 021278 154 H-DLPAQVKAVIE-KTPLDSIISSRLQYRQPQEVLWGNISRGSVCVAGDALHPMTPDIGQGGCAALEDGIVLARCINEAL 231 (315)
Q Consensus 154 ~-~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~LiGDAAh~~~P~~G~G~~~al~da~~La~~l~~~~ 231 (315)
. +.++.+++.+. ....+.++.-|.+..++- ...+.+++|+|||..+=||.+|.||..|+.|+..|-+.|....
T Consensus 290 ~PqiP~~lR~~F~~av~~g~irsmpn~~mpa~-----~~~~~G~illGDAfNMRHPltggGMtV~l~Di~lLr~ll~pl~ 364 (509)
T KOG1298|consen 290 APQIPEKLRESFLEAVDEGNIRSMPNSSMPAT-----LNDKKGVILLGDAFNMRHPLTGGGMTVALSDIVLLRRLLKPLP 364 (509)
T ss_pred CcCCCHHHHHHHHHHhhccchhcCccccCCCC-----cCCCCceEEEcccccccCCccCCceEeehhHHHHHHHHhcccc
Confidence 4 56666666443 343345555554444432 3457899999999999999999999999999999988886521
Q ss_pred hccCCCCCCchhhhhHHHHHHHHHHHHhhhhhHHHHHHHHHHhhhhhcc-CchHHHHHHHHHHHHHHHh--hhccccccc
Q 021278 232 KTKQGVGEEDEEEFNKRVEMGLKRYAKERRWRCFELISIAYLVGSIQQS-DGKILNFLRDKILASFLVG--LLLKKADFD 308 (315)
Q Consensus 232 ~~~~~~~~~~~~~s~~~~~~~l~~Y~~~r~~~~~~~~~~s~~~~~~~~~-~~~~~~~~r~~~l~~~~~~--~~~~~~~~~ 308 (315)
+....+.+.+.++.|...|++....+.-++..+..+|.. .+.....+|..++..+-.. +..+...+.
T Consensus 365 ----------dL~d~ekv~~~i~sFy~~RKp~s~tINtLa~Aly~vf~as~dea~~~mr~gCfdYl~~GG~c~sGpv~lL 434 (509)
T KOG1298|consen 365 ----------DLSDAEKVSDYIKSFYWIRKPYSATINTLANALYQVFVASTDEARKAMRKGCFDYLKRGGFCVSGPVALL 434 (509)
T ss_pred ----------ccccHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhcCCccccchHHHh
Confidence 222356788999999999999999888999999999975 8888999999999876543 555666666
Q ss_pred CCCCcC
Q 021278 309 CGNLTS 314 (315)
Q Consensus 309 ~~~~~~ 314 (315)
.|..|+
T Consensus 435 sGlnP~ 440 (509)
T KOG1298|consen 435 SGLNPR 440 (509)
T ss_pred cCCCCC
Confidence 666554
No 57
>KOG3855 consensus Monooxygenase involved in coenzyme Q (ubiquinone) biosynthesis [Coenzyme transport and metabolism; Energy production and conversion]
Probab=99.85 E-value=3.4e-21 Score=166.31 Aligned_cols=273 Identities=17% Similarity=0.225 Sum_probs=190.5
Q ss_pred eeeeHHHHHHHHHh-----hCCCCcEEecceEEEEEee------CC--eeEEEecCCCEEeecEEEecCCCchhhhhhhC
Q 021278 9 RCVRRKLLLETLAK-----ELPSGTIRYSSQVVSIEES------GH--FKLLHLADGTILKTKVLIGCDGVNSIVAKWLG 75 (315)
Q Consensus 9 ~~i~R~~L~~~L~~-----~~~~~~i~~~~~v~~~~~~------~~--~~~v~~~~g~~~~ad~vVgADG~~S~vr~~l~ 75 (315)
..+.-..+...|+. +.++++|....+++.+..- +. ...+++.+|..+..||||||||.+|.||+..+
T Consensus 145 ~iien~nIq~sL~~s~~~s~~~nv~vi~~~k~~~~~~~~~l~~~~n~~~~~i~l~dg~~~~~~LLigAdg~Ns~vR~~sn 224 (481)
T KOG3855|consen 145 FIIENDNIQCSLYNSQLDSESDNVTVINMAKVIDCTIPEYLIKNDNGMWFHITLTDGINFATDLLIGADGFNSVVRKASN 224 (481)
T ss_pred eeeehhHHHHHHHHHHHhhhcCceeeecccceeeeccccccCCCCCcceEEEEeccCceeeeceeeccccccchhhhhcC
Confidence 45555566666663 2356999999998888752 22 36788999999999999999999999999999
Q ss_pred CCCCcc-ccceEEEeeeecCC-CCCCCCceEEEecCCeEEEEEecCCCeEEEEEEeeCCCCCcc--cccChHHHHHHHHH
Q 021278 76 FKNPAF-VGRSAIRGYSDFKG-SHGFEPNFLQFFGKGLRSGFIPCDDQTIYWFFTWTSSSQDKE--LEDHSAELKQFVLG 151 (315)
Q Consensus 76 ~~~~~~-~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~ 151 (315)
++.... +.+.+.++...... .......|+.|+..|... ++|.+++. -.++|...+.... ....+|.+.+.+-.
T Consensus 225 id~~~~ny~~havVAtl~l~~~~~~~~~AwQRFlP~GpiA-llpl~d~~--s~LvWSts~~~a~~L~~lp~e~fv~~lNs 301 (481)
T KOG3855|consen 225 IDVASWNYDQHAVVATLKLEEEAILNGVAWQRFLPTGPIA-LLPLSDTL--SSLVWSTSPENASILKSLPEERFVDLLNS 301 (481)
T ss_pred CCcccccccceeeeEEEEecccccccchhHHhcCCCCcee-eccccccc--ccceeecCHHHHHHHhcCCchhHHHHHHH
Confidence 986665 45566666666655 333345677777777665 89998875 3455544443322 44556667777766
Q ss_pred HhcCCChHH-----------------HHHHHcCC-Ccceee--------ccccccCcccc-cccCcCCCcEEEeccCCCC
Q 021278 152 KLHDLPAQV-----------------KAVIEKTP-LDSIIS--------SRLQYRQPQEV-LWGNISRGSVCVAGDALHP 204 (315)
Q Consensus 152 ~~~~~~~~~-----------------~~~~~~~~-~~~~~~--------~~~~~~~~~~~-~~~~~~~~~v~LiGDAAh~ 204 (315)
.|.-..+.+ ..++...+ ..+... ...+...|+.+ +++.|+.+|+.|||||||-
T Consensus 302 af~~q~~~~~~~~~~~~al~~~~~~~~sl~~~~k~~~~~q~pp~V~~v~dksRa~FPLgf~ha~~yV~~~~Al~GDAAHr 381 (481)
T KOG3855|consen 302 AFSSQNPRAAYSDDADFALNGRAQLSESLLNTSKRLANQQYPPSVFEVGDKSRAQFPLGFGHADEYVTDRVALIGDAAHR 381 (481)
T ss_pred HHhccCCCchhhhchhhhhcchhhccHHHHhccCcccccccCCeEEEecccceeecccccccHHHhcCCchhhhcchhhc
Confidence 664221111 11222111 111111 11223334432 4567899999999999999
Q ss_pred CCCCCccchhhhhhHHHHHHHHHHHHHhccCCCCCCchhhhhHHHHHHHHHHHHhhhhhHHHHHHHHHHhhhhhccCchH
Q 021278 205 MTPDIGQGGCAALEDGIVLARCINEALKTKQGVGEEDEEEFNKRVEMGLKRYAKERRWRCFELISIAYLVGSIQQSDGKI 284 (315)
Q Consensus 205 ~~P~~G~G~~~al~da~~La~~l~~~~~~~~~~~~~~~~~s~~~~~~~l~~Y~~~r~~~~~~~~~~s~~~~~~~~~~~~~ 284 (315)
++|.+|||.|+++.|+..|...|..+.... -.+ ....-|+.|+.+|.+.--.+......+.++++.+.|.
T Consensus 382 ~hPlAgqGvNlg~~dV~~L~~sL~~ai~~g----~Dl------gS~~~L~~y~~~~~~~N~~ll~~vdkl~klY~t~~p~ 451 (481)
T KOG3855|consen 382 VHPLAGQGVNLGFSDVKILVDSLSEAIVSG----LDL------GSVEHLEPYERERLQHNYVLLGAVDKLHKLYATSAPP 451 (481)
T ss_pred cccCcccccCCChhhHHHHHHHHHHHHHhc----ccc------cchhhhhHHHHHHhhhcchHHHHHHHHHHHHhccCCc
Confidence 999999999999999999999999987762 111 2356789999999999999999999999999988887
Q ss_pred HHHHHHHHHH
Q 021278 285 LNFLRDKILA 294 (315)
Q Consensus 285 ~~~~r~~~l~ 294 (315)
.-.+|.+.+.
T Consensus 452 vV~~rt~GL~ 461 (481)
T KOG3855|consen 452 VVLLRTFGLQ 461 (481)
T ss_pred EEEEeccchh
Confidence 7777766554
No 58
>PLN02697 lycopene epsilon cyclase
Probab=99.77 E-value=1.7e-16 Score=147.53 Aligned_cols=249 Identities=15% Similarity=0.131 Sum_probs=156.6
Q ss_pred eeeeHHHHHHHHHhhCC--CCcEEecceEEEEEeeCCeeE-EEecCCCEEeecEEEecCCCchhhhhhhCCC--CCcccc
Q 021278 9 RCVRRKLLLETLAKELP--SGTIRYSSQVVSIEESGHFKL-LHLADGTILKTKVLIGCDGVNSIVAKWLGFK--NPAFVG 83 (315)
Q Consensus 9 ~~i~R~~L~~~L~~~~~--~~~i~~~~~v~~~~~~~~~~~-v~~~~g~~~~ad~vVgADG~~S~vr~~l~~~--~~~~~~ 83 (315)
..|+|..|++.|.+++. ++++ .+++|++++.+++++. +.+.+|.+++|++||+|||.+|. +.++.+ .+....
T Consensus 187 g~V~R~~L~~~Ll~~a~~~GV~~-~~~~V~~I~~~~~~~~vv~~~dG~~i~A~lVI~AdG~~S~--rl~~~~~~~~~~~~ 263 (529)
T PLN02697 187 GRVSRTLLHEELLRRCVESGVSY-LSSKVDRITEASDGLRLVACEDGRVIPCRLATVASGAASG--RLLQYEVGGPRVCV 263 (529)
T ss_pred cEEcHHHHHHHHHHHHHhcCCEE-EeeEEEEEEEcCCcEEEEEEcCCcEEECCEEEECCCcChh--hhhccccCCCCccc
Confidence 36999999999999874 4777 6789999988777654 45678889999999999999993 333322 222223
Q ss_pred ceEEEeeeecCCCCCCCCceEEEec---------------CCeEEEEEecCCCeEEEEEEeeCCCCCcccccChHHHHHH
Q 021278 84 RSAIRGYSDFKGSHGFEPNFLQFFG---------------KGLRSGFIPCDDQTIYWFFTWTSSSQDKELEDHSAELKQF 148 (315)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (315)
+.++...+++.... ++....++++ ...+.+++|.++++.+.--+.-... ...+.+.+++.
T Consensus 264 Q~a~Gi~ve~~~~~-~d~~~~vlMD~r~~~~~~~~~~~~~~p~FlYvlP~~~~~~~VE~T~l~~~----~~l~~~~l~~~ 338 (529)
T PLN02697 264 QTAYGVEVEVENNP-YDPSLMVFMDYRDYFKEKVSHLEAEYPTFLYAMPMSSTRVFFEETCLASK----DAMPFDLLKKR 338 (529)
T ss_pred EEEEEEEEEecCCC-CCcchheeeccccccccccccccCCCceEEEEeecCCCeEEEEEeeeccC----CCCCHHHHHHH
Confidence 44444444444322 2222223322 1257888999998866523321111 12235666777
Q ss_pred HHHHhcCCChHHHHHHHcCCCcceeeccccccCcccccccCcCCCcEEEeccCCCCCCCCCccchhhhhhHHHHHHHHHH
Q 021278 149 VLGKLHDLPAQVKAVIEKTPLDSIISSRLQYRQPQEVLWGNISRGSVCVAGDALHPMTPDIGQGGCAALEDGIVLARCIN 228 (315)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~LiGDAAh~~~P~~G~G~~~al~da~~La~~l~ 228 (315)
+.+++........++++. ..-..|+.. +. +. ..+++++|||||+.++|.+|.|+..++.+|..+|++|+
T Consensus 339 L~~~l~~~Gi~~~~i~~~----E~g~iPm~g--~~----~~-~~~~vl~vG~AAG~vhPsTGy~v~~~l~~A~~~A~~ia 407 (529)
T PLN02697 339 LMSRLETMGIRILKTYEE----EWSYIPVGG--SL----PN-TEQKNLAFGAAASMVHPATGYSVVRSLSEAPKYASVIA 407 (529)
T ss_pred HHHHHHhCCCCcceEEEE----EeeeecCCC--CC----cc-cCCCeeEeehhhcCCCCchhhhHHHHHHhHHHHHHHHH
Confidence 777665432221111111 111223211 11 12 26799999999999999999999999999999999999
Q ss_pred HHHhccCCCCCCchhhhhHHHHHHHHHHHHhhhhhHHHHHHHHHHhhhhhc
Q 021278 229 EALKTKQGVGEEDEEEFNKRVEMGLKRYAKERRWRCFELISIAYLVGSIQQ 279 (315)
Q Consensus 229 ~~~~~~~~~~~~~~~~s~~~~~~~l~~Y~~~r~~~~~~~~~~s~~~~~~~~ 279 (315)
+++.... ........+....+++.|++.+.....+...+-.....++.
T Consensus 408 ~~l~~~~---~~~~~~~~~~~~~~l~~~~~lw~~e~~r~~~~~~~g~~~l~ 455 (529)
T PLN02697 408 RILKNVS---SGGKLGTSNSSNISMQAWNTLWPQERKRQRAFFLFGLALIL 455 (529)
T ss_pred HHhhCCc---cccccccccchHHHHHHHHHhChHHHHHHHHHHHHHHHHHH
Confidence 9988620 00000001356788999999988877777666555555544
No 59
>TIGR01789 lycopene_cycl lycopene cyclase. This model represents a family of bacterial lycopene cyclases catalyzing the transformation of lycopene to carotene. These enzymes are found in a limited spectrum of alpha and gamma proteobacteria as well as Flavobacterium.
Probab=99.75 E-value=2.2e-16 Score=141.95 Aligned_cols=231 Identities=14% Similarity=0.079 Sum_probs=138.9
Q ss_pred ccceeeeHHHHHHHHHhhCCCCcEEecceEEEEEeeCCeeEEEecCCCEEeecEEEecCCCchhhhhhhCCCCCccccce
Q 021278 6 HEMRCVRRKLLLETLAKELPSGTIRYSSQVVSIEESGHFKLLHLADGTILKTKVLIGCDGVNSIVAKWLGFKNPAFVGRS 85 (315)
Q Consensus 6 ~~~~~i~R~~L~~~L~~~~~~~~i~~~~~v~~~~~~~~~~~v~~~~g~~~~ad~vVgADG~~S~vr~~l~~~~~~~~~~~ 85 (315)
+...+|+|.+|.+.|.++++.. ++.+++|+++ +++++ ++.+|++++||+||+|||.+|.-... ..++...
T Consensus 81 ~~Y~~I~r~~f~~~l~~~l~~~-i~~~~~V~~v--~~~~v--~l~dg~~~~A~~VI~A~G~~s~~~~~-----~~~Q~f~ 150 (370)
T TIGR01789 81 TAYRSMTSTRFHEGLLQAFPEG-VILGRKAVGL--DADGV--DLAPGTRINARSVIDCRGFKPSAHLK-----GGFQVFL 150 (370)
T ss_pred CCceEEEHHHHHHHHHHhhccc-EEecCEEEEE--eCCEE--EECCCCEEEeeEEEECCCCCCCcccc-----ceeeEEE
Confidence 4667999999999999887544 8889999988 44554 44889999999999999999752111 1111222
Q ss_pred EEEeeeecCCCCCCCCceE-EEe---cCC-eEEEEEecCCCeEEEEEEeeCCCCCcccccChHHHHHHHHHHhcCCChHH
Q 021278 86 AIRGYSDFKGSHGFEPNFL-QFF---GKG-LRSGFIPCDDQTIYWFFTWTSSSQDKELEDHSAELKQFVLGKLHDLPAQV 160 (315)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~-~~~---~~~-~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (315)
++. +....+...+.... -+. ..+ .+.+.+|.++++.+|-.+.-.+. ...+.+.+++.+.+++.......
T Consensus 151 G~~--~r~~~p~~~~~~~lMD~~~~q~~g~~F~Y~lP~~~~~~lvE~T~~s~~----~~l~~~~l~~~l~~~~~~~g~~~ 224 (370)
T TIGR01789 151 GRE--MRLQEPHGLENPIIMDATVDQLAGYRFVYVLPLGSHDLLIEDTYYADD----PLLDRNALSQRIDQYARANGWQN 224 (370)
T ss_pred EEE--EEEcCCCCCCccEEEeeeccCCCCceEEEECcCCCCeEEEEEEeccCC----CCCCHHHHHHHHHHHHHHhCCCc
Confidence 222 33333221111111 111 233 45555999999877644332221 22346666666666554322222
Q ss_pred HHHHHcCCCcceeeccccccCcccccccCc-CCCcEEEeccCCCCCCCCCccchhhhhhHHHHHHHHHH-HHHhccCCCC
Q 021278 161 KAVIEKTPLDSIISSRLQYRQPQEVLWGNI-SRGSVCVAGDALHPMTPDIGQGGCAALEDGIVLARCIN-EALKTKQGVG 238 (315)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~LiGDAAh~~~P~~G~G~~~al~da~~La~~l~-~~~~~~~~~~ 238 (315)
.+++... ....|+....+.. ..| .+++++++|||||.++|.+|+|++.|++||..|++.+. +
T Consensus 225 ~~i~~~e----~g~iPm~~~~~~~---~~~~~~~~v~~iG~AAg~~~P~tGyg~~~a~~~a~~la~~~~~~--------- 288 (370)
T TIGR01789 225 GTPVRHE----QGVLPVLLGGDFS---AYQDEVRIVAIAGLRAGLTHPTTGYSLPVAVENADALAAQPDLS--------- 288 (370)
T ss_pred eEEEEee----eeEEeeecCCCcc---cccccCCceeeeecccccccccccccHHHHHHHHHHHHhccCcC---------
Confidence 2222211 1122321111000 012 25569999999999999999999999999999998885 2
Q ss_pred CCchhhhhHHHHHHHHHHHHhhhhhHHHHHHHHHHhh
Q 021278 239 EEDEEEFNKRVEMGLKRYAKERRWRCFELISIAYLVG 275 (315)
Q Consensus 239 ~~~~~~s~~~~~~~l~~Y~~~r~~~~~~~~~~s~~~~ 275 (315)
.....+++..|...|..+.....-..+.+.
T Consensus 289 -------~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll 318 (370)
T TIGR01789 289 -------SEQLAAFIDSRARRHWSKTGYYRLLNRMLF 318 (370)
T ss_pred -------ccchhhhhhHHHHHHHHHhHHHHHHHHHHh
Confidence 113445678888888777775555544443
No 60
>PF04820 Trp_halogenase: Tryptophan halogenase; InterPro: IPR006905 Tryptophan halogenase catalyses the chlorination of tryptophan to form 7-chlorotryptophan. This is the first step in the biosynthesis of pyrrolnitrin, an antibiotic with broad-spectrum anti-fungal activity. Tryptophan halogenase is NADH-dependent [].; PDB: 2PYX_B 2OAL_B 2E4G_A 2OAM_A 2OA1_B 2O9Z_A 3I3L_A 2AQJ_A 2ARD_A 2JKC_A ....
Probab=99.75 E-value=5.5e-17 Score=149.32 Aligned_cols=248 Identities=17% Similarity=0.127 Sum_probs=156.3
Q ss_pred CccceeeeHHHHHHHHHhhC--CCCcEEecceEEEEEeeCCe--eEEEecCCCEEeecEEEecCCCchhhhhh-hCCCCC
Q 021278 5 EHEMRCVRRKLLLETLAKEL--PSGTIRYSSQVVSIEESGHF--KLLHLADGTILKTKVLIGCDGVNSIVAKW-LGFKNP 79 (315)
Q Consensus 5 ~~~~~~i~R~~L~~~L~~~~--~~~~i~~~~~v~~~~~~~~~--~~v~~~~g~~~~ad~vVgADG~~S~vr~~-l~~~~~ 79 (315)
-...+.++|..|++.|++.+ .+++++.+ +|+++..++++ ..|.+++|++++||++|+|+|.+|.+.+. ++....
T Consensus 145 ~~~ayhlDR~~fd~~L~~~A~~~Gv~~~~g-~V~~v~~~~~g~i~~v~~~~g~~i~ad~~IDASG~~s~L~~~~L~~~~~ 223 (454)
T PF04820_consen 145 FNYAYHLDRAKFDQFLRRHAEERGVEVIEG-TVVDVELDEDGRITAVRLDDGRTIEADFFIDASGRRSLLARKALKVGFR 223 (454)
T ss_dssp SS-EEEEEHHHHHHHHHHHHHHTT-EEEET--EEEEEE-TTSEEEEEEETTSEEEEESEEEE-SGGG-CCCCCCT-EEEE
T ss_pred CCeeEEEeHHHHHHHHHHHHhcCCCEEEeC-EEEEEEEcCCCCEEEEEECCCCEEEEeEEEECCCccchhhHhhhcCCCc
Confidence 45668899999999999987 56999988 48888877665 46888999999999999999999998665 443322
Q ss_pred ccccc----eEEEeeeecCCCCCCCCceEEEecCCeEEEEEecCCCeEEEEEEeeCCCCCcccccChHHHHHHHHHHhcC
Q 021278 80 AFVGR----SAIRGYSDFKGSHGFEPNFLQFFGKGLRSGFIPCDDQTIYWFFTWTSSSQDKELEDHSAELKQFVLGKLHD 155 (315)
Q Consensus 80 ~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (315)
..... .++...+.... ...+.......+.+.++.+|+.++... .+++..... +.++..+.+.+.+..
T Consensus 224 ~~~~~L~~d~av~~~~~~~~--~~~~~T~~~a~~~GW~W~IPL~~~~~~-G~V~s~~~~------s~~~A~~~l~~~l~~ 294 (454)
T PF04820_consen 224 DWSDWLPNDRAVAVQVPNED--PPEPYTRSTAFEAGWIWYIPLQNRRGS-GYVYSSDFI------SDDEAEAELLAYLGG 294 (454)
T ss_dssp EETTTCEEEEEEEEEEE-SS--CTTSSEEEEEESSEEEEEEEESSEEEE-EEEEETTTS------HHHHHHHHHHHHHTC
T ss_pred cccccccccEEEEEecCcCC--CCCCceeEEecCCceEEEccCCCcceE-EEEeccccC------CHHHHHHHHHHhcch
Confidence 22222 23332333332 223333344456677779999988655 555543322 344444556655442
Q ss_pred CChHHHHHHHcCCCcceeeccccccCcccccccCcCCCcEEEeccCCCCCCCCCccchhhhhhHHHHHHHHHHHHHhccC
Q 021278 156 LPAQVKAVIEKTPLDSIISSRLQYRQPQEVLWGNISRGSVCVAGDALHPMTPDIGQGGCAALEDGIVLARCINEALKTKQ 235 (315)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~LiGDAAh~~~P~~G~G~~~al~da~~La~~l~~~~~~~~ 235 (315)
... ..+ ...++... ...+...+|+++|||||+.++|+.++|+.+++..+..+++.|..
T Consensus 295 ~~~-------~~~----~~i~~~~g-----~~~~~~~~n~vavGdAAgFiDPL~StGI~la~~aa~~l~~~l~~------ 352 (454)
T PF04820_consen 295 SPE-------AEP----RHIRFRSG-----RRKQFWGKNCVAVGDAAGFIDPLESTGIHLALSAAEALAEALPD------ 352 (454)
T ss_dssp HCT-------TSC----EEEE-S-E-----EESSSEETTEEE-CCCTEE--GGGSHHHHHHHHHHHHHHHTHHC------
T ss_pred hhh-------cch----hhhccccc-----chhhcccCCEEEEcchhhccCccccccHHHHHHHHHHHHHhccc------
Confidence 211 000 11111111 12344578899999999999999999999999977777776654
Q ss_pred CCCCCchhhhhHHHHHHHHHHHHhhhhhHHHHHHHHHHhhhhh-ccCchHHHHHHHHHHH
Q 021278 236 GVGEEDEEEFNKRVEMGLKRYAKERRWRCFELISIAYLVGSIQ-QSDGKILNFLRDKILA 294 (315)
Q Consensus 236 ~~~~~~~~~s~~~~~~~l~~Y~~~r~~~~~~~~~~s~~~~~~~-~~~~~~~~~~r~~~l~ 294 (315)
.+..+.+++.|++..+...+...++-....... +...++++..|..-++
T Consensus 353 ----------~~~~~~~~~~Yn~~~~~~~~~~~~fi~~hY~~~~r~ds~FW~~~~~~~~~ 402 (454)
T PF04820_consen 353 ----------DDFSPAALDRYNRRMRREYERIRDFISLHYQLSRRRDSPFWRARRSMSIP 402 (454)
T ss_dssp ----------TTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHS-SSHHHHHHCCSGCH
T ss_pred ----------CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHccccCCCCHHHHhccccCCC
Confidence 112367899999999999999999877777753 3555777777744443
No 61
>PLN02463 lycopene beta cyclase
Probab=99.72 E-value=2.8e-15 Score=137.38 Aligned_cols=207 Identities=16% Similarity=0.178 Sum_probs=132.3
Q ss_pred cceeeeHHHHHHHHHhhCC--CCcEEecceEEEEEeeCCeeEEEecCCCEEeecEEEecCCCchhhhhhhCCCCCccccc
Q 021278 7 EMRCVRRKLLLETLAKELP--SGTIRYSSQVVSIEESGHFKLLHLADGTILKTKVLIGCDGVNSIVAKWLGFKNPAFVGR 84 (315)
Q Consensus 7 ~~~~i~R~~L~~~L~~~~~--~~~i~~~~~v~~~~~~~~~~~v~~~~g~~~~ad~vVgADG~~S~vr~~l~~~~~~~~~~ 84 (315)
.+..|+|..|.+.|.+++. +++++ ..+|++++.+++++.|++++|.+++||+||+|||.+|.+++.. .+...++
T Consensus 107 ~y~~V~R~~L~~~Ll~~~~~~GV~~~-~~~V~~I~~~~~~~~V~~~dG~~i~A~lVI~AdG~~s~l~~~~---~~~~~g~ 182 (447)
T PLN02463 107 PYGRVNRKKLKSKMLERCIANGVQFH-QAKVKKVVHEESKSLVVCDDGVKIQASLVLDATGFSRCLVQYD---KPFNPGY 182 (447)
T ss_pred cceeEEHHHHHHHHHHHHhhcCCEEE-eeEEEEEEEcCCeEEEEECCCCEEEcCEEEECcCCCcCccCCC---CCCCccc
Confidence 4456899999999999874 47775 5799999988888899999999999999999999999886532 2222233
Q ss_pred e-EEEeeeecCCCCCCCCceEEEe-------c---------C--CeEEEEEecCCCeEEEEEEeeCCCCCcccccChHHH
Q 021278 85 S-AIRGYSDFKGSHGFEPNFLQFF-------G---------K--GLRSGFIPCDDQTIYWFFTWTSSSQDKELEDHSAEL 145 (315)
Q Consensus 85 ~-~~~~~~~~~~~~~~~~~~~~~~-------~---------~--~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (315)
. ++...++.... +++.....++ + . ..+.+.+|.++++++.-.+.-... ...+.++.
T Consensus 183 Q~a~Gi~~ev~~~-p~d~~~~vlMD~r~~~~~~~~~~~~~~~~~p~FlY~~P~~~~~~~vEeT~l~s~----~~~~~~~l 257 (447)
T PLN02463 183 QVAYGILAEVDSH-PFDLDKMLFMDWRDSHLGNNPELRARNSKLPTFLYAMPFSSNRIFLEETSLVAR----PGLPMDDI 257 (447)
T ss_pred eeeeeEEeecCCC-CcccccchhhhcChhhccccchhhhccCCCCceEEEEecCCCeEEEEeeeeecC----CCCCHHHH
Confidence 2 32223333321 1111111110 0 0 247789999998754332210010 11235666
Q ss_pred HHHHHHHhcCCChHHHHHHHcCCCcceeeccccccCcccccccCcCCCcEEEeccCCCCCCCCCccchhhhhhHHHHHHH
Q 021278 146 KQFVLGKLHDLPAQVKAVIEKTPLDSIISSRLQYRQPQEVLWGNISRGSVCVAGDALHPMTPDIGQGGCAALEDGIVLAR 225 (315)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~LiGDAAh~~~P~~G~G~~~al~da~~La~ 225 (315)
++.+.+.+........++... .....|+. .+. +...+++++|||||+.++|.+|.|+..++..+..+|+
T Consensus 258 k~~L~~~l~~~Gi~~~~i~~~----E~~~IPmg--~~~-----~~~~~~~~~~G~aag~v~p~tG~~i~~~~~~~~~~a~ 326 (447)
T PLN02463 258 QERMVARLRHLGIKVKSVEED----EKCVIPMG--GPL-----PVIPQRVLGIGGTAGMVHPSTGYMVARTLAAAPIVAD 326 (447)
T ss_pred HHHHHHHHHHCCCCcceeeee----eeeEeeCC--CCC-----CCCCCCEEEecchhcCcCCCccccHHHHHHHHHHHHH
Confidence 677776665333221111111 11112221 111 1246799999999999999999999999999999999
Q ss_pred HHHHHHhc
Q 021278 226 CINEALKT 233 (315)
Q Consensus 226 ~l~~~~~~ 233 (315)
++.+++..
T Consensus 327 ~~~~~~~~ 334 (447)
T PLN02463 327 AIVEYLGS 334 (447)
T ss_pred HHHHHHhc
Confidence 99999885
No 62
>PF05834 Lycopene_cycl: Lycopene cyclase protein; InterPro: IPR008671 This family consists of lycopene beta and epsilon cyclase proteins. Carotenoids with cyclic end groups are essential components of the photosynthetic membranes in all plants, algae, and cyanobacteria. These lipid-soluble compounds protect against photo-oxidation, harvest light for photosynthesis, and dissipate excess light energy absorbed by the antenna pigments. The cyclisation of lycopene (psi, psi-carotene) is a key branch point in the pathway of carotenoid biosynthesis. Two types of cyclic end groups are found in higher plant carotenoids: the beta and epsilon rings. Carotenoids with two beta rings are ubiquitous, and those with one beta and one epsilon ring are common; however, carotenoids with two epsilon rings are rare [].; GO: 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0016117 carotenoid biosynthetic process
Probab=99.51 E-value=4.9e-12 Score=114.31 Aligned_cols=204 Identities=19% Similarity=0.115 Sum_probs=134.1
Q ss_pred ccceeeeHHHHHHHHHhhCC-CCcEEecceEEEEEeeCCeeEEEecCCCEEeecEEEecCCCchhhhhhhCCCCCccccc
Q 021278 6 HEMRCVRRKLLLETLAKELP-SGTIRYSSQVVSIEESGHFKLLHLADGTILKTKVLIGCDGVNSIVAKWLGFKNPAFVGR 84 (315)
Q Consensus 6 ~~~~~i~R~~L~~~L~~~~~-~~~i~~~~~v~~~~~~~~~~~v~~~~g~~~~ad~vVgADG~~S~vr~~l~~~~~~~~~~ 84 (315)
+.+.+|+|..|++.|.+++. +..++.+.+|.+++..++++.|.+++|.+++|++||+|+|..|...+..+ .+
T Consensus 79 ~~Y~~i~~~~f~~~l~~~~~~~~~~~~~~~V~~i~~~~~~~~v~~~~g~~i~a~~VvDa~g~~~~~~~~~~-------~Q 151 (374)
T PF05834_consen 79 YPYCMIDRADFYEFLLERAAAGGVIRLNARVTSIEETGDGVLVVLADGRTIRARVVVDARGPSSPKARPLG-------LQ 151 (374)
T ss_pred cceEEEEHHHHHHHHHHHhhhCCeEEEccEEEEEEecCceEEEEECCCCEEEeeEEEECCCcccccccccc-------cc
Confidence 46679999999999999986 46788999999999999988899999999999999999997766211111 12
Q ss_pred eEEEeeeecCCCC--CCCCceEEEe-----cCCeEEEEEecCCCeEEEEEEeeCCCCCcccccChHHHHHHHHHHhcCCC
Q 021278 85 SAIRGYSDFKGSH--GFEPNFLQFF-----GKGLRSGFIPCDDQTIYWFFTWTSSSQDKELEDHSAELKQFVLGKLHDLP 157 (315)
Q Consensus 85 ~~~~~~~~~~~~~--~~~~~~~~~~-----~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (315)
.++...++...+. +....+.-|. +...+++.+|.++++...-.++-... ...+.+.+++.+.+++....
T Consensus 152 ~f~G~~v~~~~~~f~~~~~~lMD~r~~~~~~~~~F~Y~lP~~~~~alvE~T~fs~~----~~~~~~~~~~~l~~~l~~~g 227 (374)
T PF05834_consen 152 HFYGWEVETDEPVFDPDTATLMDFRVPQSADGPSFLYVLPFSEDRALVEETSFSPR----PALPEEELKARLRRYLERLG 227 (374)
T ss_pred eeEEEEEeccCCCCCCCceEEEEecccCCCCCceEEEEEEcCCCeEEEEEEEEcCC----CCCCHHHHHHHHHHHHHHcC
Confidence 2222233444331 1111111121 22367888999999865543332221 22446677777777776544
Q ss_pred hHHHHHHHcCCCcceeeccccccCcccccccCcCCCcEEEeccCCCCCCCCCccchhhhhhHHHHHHHHHHH
Q 021278 158 AQVKAVIEKTPLDSIISSRLQYRQPQEVLWGNISRGSVCVAGDALHPMTPDIGQGGCAALEDGIVLARCINE 229 (315)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~LiGDAAh~~~P~~G~G~~~al~da~~La~~l~~ 229 (315)
....++++.. .-..|+....+. +-..++++.+|+||+.++|.+|.++..++..+..+++.|.+
T Consensus 228 ~~~~~i~~~E----~G~IPm~~~~~~-----~~~~~~v~~iG~agG~v~PsTGYs~~~~~~~a~~ia~~l~~ 290 (374)
T PF05834_consen 228 IDDYEILEEE----RGVIPMTTGGFP-----PRFGQRVIRIGTAGGMVKPSTGYSFARIQRQADAIADALAK 290 (374)
T ss_pred CCceeEEEee----cceeecccCCCc-----cccCCCeeeEEccccCCCCcccHHHHHHHHHHHHHHHHHhh
Confidence 3333332221 112233111111 22466799999999999999999999999998888888876
No 63
>TIGR01377 soxA_mon sarcosine oxidase, monomeric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=97.96 E-value=0.00086 Score=60.81 Aligned_cols=69 Identities=22% Similarity=0.280 Sum_probs=52.2
Q ss_pred eeeHHHHHHHHHhhC--CCCcEEecceEEEEEeeCCeeEEEecCCCEEeecEEEecCCC-chhhhhhhCCCCC
Q 021278 10 CVRRKLLLETLAKEL--PSGTIRYSSQVVSIEESGHFKLLHLADGTILKTKVLIGCDGV-NSIVAKWLGFKNP 79 (315)
Q Consensus 10 ~i~R~~L~~~L~~~~--~~~~i~~~~~v~~~~~~~~~~~v~~~~g~~~~ad~vVgADG~-~S~vr~~l~~~~~ 79 (315)
.++-..+.+.|.+.+ .+++++.+++|++++.+++++.|...++ +++||.||.|.|. .|.+++.++...+
T Consensus 141 ~i~p~~~~~~l~~~~~~~g~~~~~~~~V~~i~~~~~~~~v~~~~~-~i~a~~vV~aaG~~~~~l~~~~g~~~~ 212 (380)
T TIGR01377 141 VLYAEKALRALQELAEAHGATVRDGTKVVEIEPTELLVTVKTTKG-SYQANKLVVTAGAWTSKLLSPLGIEIP 212 (380)
T ss_pred EEcHHHHHHHHHHHHHHcCCEEECCCeEEEEEecCCeEEEEeCCC-EEEeCEEEEecCcchHHHhhhcccCCC
Confidence 456667777777654 4689999999999998877777776665 7899877777776 4778888776543
No 64
>TIGR02352 thiamin_ThiO glycine oxidase ThiO. This family consists of the homotetrameric, FAD-dependent glycine oxidase ThiO, from species such as Bacillus subtilis that use glycine in thiamine biosynthesis. In general, members of this family will not be found in species such as E. coli that instead use tyrosine and the ThiH protein.
Probab=97.89 E-value=0.0023 Score=56.86 Aligned_cols=59 Identities=22% Similarity=0.191 Sum_probs=46.8
Q ss_pred eeeHHHHHHHHHhhC--CCCcEEecceEEEEEeeCCeeE-EEecCCCEEeecEEEecCCCchh
Q 021278 10 CVRRKLLLETLAKEL--PSGTIRYSSQVVSIEESGHFKL-LHLADGTILKTKVLIGCDGVNSI 69 (315)
Q Consensus 10 ~i~R~~L~~~L~~~~--~~~~i~~~~~v~~~~~~~~~~~-v~~~~g~~~~ad~vVgADG~~S~ 69 (315)
.++-..|...|.+.+ .+++++.+++|++++.+++++. |...+| +++||.||.|.|.+|.
T Consensus 133 ~v~p~~l~~~l~~~~~~~g~~~~~~~~v~~i~~~~~~~~~v~~~~g-~~~a~~vV~a~G~~~~ 194 (337)
T TIGR02352 133 HVDPRALLKALEKALEKLGVEIIEHTEVQHIEIRGEKVTAIVTPSG-DVQADQVVLAAGAWAG 194 (337)
T ss_pred eEChHHHHHHHHHHHHHcCCEEEccceEEEEEeeCCEEEEEEcCCC-EEECCEEEEcCChhhh
Confidence 456677777887765 3599999999999998777654 555555 8999999999999875
No 65
>PRK11259 solA N-methyltryptophan oxidase; Provisional
Probab=97.81 E-value=0.0019 Score=58.40 Aligned_cols=58 Identities=21% Similarity=0.284 Sum_probs=44.4
Q ss_pred eeHHHHHHHHHhhC--CCCcEEecceEEEEEeeCCeeEEEecCCCEEeecEEEecCCCchh
Q 021278 11 VRRKLLLETLAKEL--PSGTIRYSSQVVSIEESGHFKLLHLADGTILKTKVLIGCDGVNSI 69 (315)
Q Consensus 11 i~R~~L~~~L~~~~--~~~~i~~~~~v~~~~~~~~~~~v~~~~g~~~~ad~vVgADG~~S~ 69 (315)
++-..+...+.+.+ .+++++.+++|++++.+++++.|...+| +++||.||.|+|.++.
T Consensus 146 v~p~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g-~~~a~~vV~A~G~~~~ 205 (376)
T PRK11259 146 LRPELAIKAHLRLAREAGAELLFNEPVTAIEADGDGVTVTTADG-TYEAKKLVVSAGAWVK 205 (376)
T ss_pred EcHHHHHHHHHHHHHHCCCEEECCCEEEEEEeeCCeEEEEeCCC-EEEeeEEEEecCcchh
Confidence 34444444454443 4699999999999998877788887776 7999999999999864
No 66
>TIGR00562 proto_IX_ox protoporphyrinogen oxidase. This protein is a flavoprotein and has a beta-alpha-beta dinucleotide binding motif near the amino end.
Probab=97.79 E-value=0.0054 Score=57.21 Aligned_cols=59 Identities=20% Similarity=0.250 Sum_probs=46.8
Q ss_pred HHHHHHHhhCCCCcEEecceEEEEEeeCCeeEEEecCCCEEeecEEEecCCCchhhhhhh
Q 021278 15 LLLETLAKELPSGTIRYSSQVVSIEESGHFKLLHLADGTILKTKVLIGCDGVNSIVAKWL 74 (315)
Q Consensus 15 ~L~~~L~~~~~~~~i~~~~~v~~~~~~~~~~~v~~~~g~~~~ad~vVgADG~~S~vr~~l 74 (315)
.|-+.|.+.+..++|+++++|.+|+.++++++|+..+|++++||.||-|--.... .+.+
T Consensus 226 ~l~~~l~~~l~~~~i~~~~~V~~I~~~~~~~~v~~~~g~~~~ad~VI~t~P~~~~-~~ll 284 (462)
T TIGR00562 226 TLPEEIEKRLKLTKVYKGTKVTKLSHRGSNYTLELDNGVTVETDSVVVTAPHKAA-AGLL 284 (462)
T ss_pred HHHHHHHHHhccCeEEcCCeEEEEEecCCcEEEEECCCcEEEcCEEEECCCHHHH-HHHh
Confidence 4556666666557899999999999988888898888889999999998876533 4444
No 67
>KOG2415 consensus Electron transfer flavoprotein ubiquinone oxidoreductase [Energy production and conversion]
Probab=97.73 E-value=0.0045 Score=55.24 Aligned_cols=218 Identities=13% Similarity=0.051 Sum_probs=130.9
Q ss_pred CccceeeeHHHHHHHHHhhCCC--CcEEecceEEEEEeeCCe-e-EEEe------cCC---------CEEeecEEEecCC
Q 021278 5 EHEMRCVRRKLLLETLAKELPS--GTIRYSSQVVSIEESGHF-K-LLHL------ADG---------TILKTKVLIGCDG 65 (315)
Q Consensus 5 ~~~~~~i~R~~L~~~L~~~~~~--~~i~~~~~v~~~~~~~~~-~-~v~~------~~g---------~~~~ad~vVgADG 65 (315)
+...+.++=..|.++|-+.+++ ++|..+..+.++-.++++ | -|.. ++| -+++|+.-|-|.|
T Consensus 174 NhGNYvv~L~~~v~wLg~kAEe~GvEiyPg~aaSevly~edgsVkGiaT~D~GI~k~G~pKd~FerGme~hak~TifAEG 253 (621)
T KOG2415|consen 174 NHGNYVVSLGQLVRWLGEKAEELGVEIYPGFAASEVLYDEDGSVKGIATNDVGISKDGAPKDTFERGMEFHAKVTIFAEG 253 (621)
T ss_pred cCCcEEEEHHHHHHHHHHHHHhhCceeccccchhheeEcCCCcEeeEeeccccccCCCCccccccccceecceeEEEecc
Confidence 4557889999999999998754 999999999999988765 2 1222 122 3799999999999
Q ss_pred Cchhhhhhh----CCC---CCccccceEEEeeeecCCCCCCCCceEEEec-------CCeEEEEEecCCCeEEEEEEeeC
Q 021278 66 VNSIVAKWL----GFK---NPAFVGRSAIRGYSDFKGSHGFEPNFLQFFG-------KGLRSGFIPCDDQTIYWFFTWTS 131 (315)
Q Consensus 66 ~~S~vr~~l----~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~p~~~~~~~~~~~~~~ 131 (315)
.+..+.+++ +.. +++-++ .++.-+.+.++....+....+.++ -|+.+ +|-+.++.+...++...
T Consensus 254 c~G~Lskqi~kkf~Lr~n~e~qtYg-lGlKEvWei~~~~~~pG~v~HT~GwPl~~~tYGGsF-lYh~~d~~VavGlVVgL 331 (621)
T KOG2415|consen 254 CHGSLSKQIIKKFDLRENCEPQTYG-LGLKEVWEIDPENHNPGEVAHTLGWPLDNDTYGGSF-LYHFNDPLVAVGLVVGL 331 (621)
T ss_pred ccchhHHHHHHHhCcccCCCcceec-cccceeEecChhhcCCcceeeeccCcccCCccCcee-EEEcCCCeEEEEEEEEe
Confidence 998887766 222 111111 122222333333222333333222 12334 56677777666666544
Q ss_pred CCCCcccccChHHHHHHHHHHhcCCChHHHHHHHcCCCcceeeccccccCcccccccCcCCCcEEEeccCCCCCCCCCcc
Q 021278 132 SSQDKELEDHSAELKQFVLGKLHDLPAQVKAVIEKTPLDSIISSRLQYRQPQEVLWGNISRGSVCVAGDALHPMTPDIGQ 211 (315)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~LiGDAAh~~~P~~G~ 211 (315)
+-.+.. .++ + ++|.+. .-.|.+.++++..+--..-...+...-. +..++.+-.+-+|||=+|++++=----
T Consensus 332 dY~NP~--lsP--~-~EFQk~--K~hP~i~~vleGgk~i~YgARaLNEGGf--QsiPkl~FPGG~liGcSaGFlNVpKIK 402 (621)
T KOG2415|consen 332 DYKNPY--LSP--Y-KEFQKM--KHHPSISKVLEGGKRIAYGARALNEGGF--QSIPKLVFPGGALIGCSAGFLNVPKIK 402 (621)
T ss_pred cCCCCC--CCH--H-HHHHHh--hcCcchhhhhcCcceeeehhhhhccCCc--ccCcccccCCceEeecccccccccccc
Confidence 432222 223 1 233322 2356677777664311111111111100 011234555678999999999998999
Q ss_pred chhhhhhHHHHHHHHHHHHHhc
Q 021278 212 GGCAALEDGIVLARCINEALKT 233 (315)
Q Consensus 212 G~~~al~da~~La~~l~~~~~~ 233 (315)
|-..||.++..+|+.+-.++.+
T Consensus 403 GTHtAMKSGmlAAesif~ai~~ 424 (621)
T KOG2415|consen 403 GTHTAMKSGMLAAESIFEAIKG 424 (621)
T ss_pred cchhhhhcchhHHHHHHHHHhc
Confidence 9999999999999999888765
No 68
>PRK12409 D-amino acid dehydrogenase small subunit; Provisional
Probab=97.68 E-value=0.0052 Score=56.43 Aligned_cols=63 Identities=27% Similarity=0.334 Sum_probs=46.3
Q ss_pred HHHHHHHhhC--CCCcEEecceEEEEEeeCCeeEEEecCC-----CEEeecEEEecCCCchh-hhhhhCCC
Q 021278 15 LLLETLAKEL--PSGTIRYSSQVVSIEESGHFKLLHLADG-----TILKTKVLIGCDGVNSI-VAKWLGFK 77 (315)
Q Consensus 15 ~L~~~L~~~~--~~~~i~~~~~v~~~~~~~~~~~v~~~~g-----~~~~ad~vVgADG~~S~-vr~~l~~~ 77 (315)
.+.+.|.+.+ .+++++++++|++++.+++++++...++ .+++||.||.|.|.+|. +.+.++..
T Consensus 198 ~~~~~l~~~a~~~G~~i~~~~~V~~i~~~~~~~~v~~~~~~~~~~~~i~a~~vV~a~G~~s~~l~~~~~~~ 268 (410)
T PRK12409 198 KFTTGLAAACARLGVQFRYGQEVTSIKTDGGGVVLTVQPSAEHPSRTLEFDGVVVCAGVGSRALAAMLGDR 268 (410)
T ss_pred HHHHHHHHHHHhCCCEEEcCCEEEEEEEeCCEEEEEEEcCCCCccceEecCEEEECCCcChHHHHHHhCCC
Confidence 5556666555 3699999999999998777776655443 37999999999999974 34445543
No 69
>TIGR01373 soxB sarcosine oxidase, beta subunit family, heterotetrameric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms.
Probab=97.67 E-value=0.0029 Score=58.07 Aligned_cols=68 Identities=22% Similarity=0.254 Sum_probs=48.7
Q ss_pred eeHHHHHHHHHhhC--CCCcEEecceEEEEEee-CCee-EEEecCCCEEeec-EEEecCCCchhhhhhhCCCCC
Q 021278 11 VRRKLLLETLAKEL--PSGTIRYSSQVVSIEES-GHFK-LLHLADGTILKTK-VLIGCDGVNSIVAKWLGFKNP 79 (315)
Q Consensus 11 i~R~~L~~~L~~~~--~~~~i~~~~~v~~~~~~-~~~~-~v~~~~g~~~~ad-~vVgADG~~S~vr~~l~~~~~ 79 (315)
++-..+...|.+.+ .++++..+++|++++.. ++.+ .|...+| +++|+ +||+|+|..|.+++.++...+
T Consensus 180 v~p~~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~~~~~~~~v~t~~g-~i~a~~vVvaagg~~~~l~~~~g~~~~ 252 (407)
T TIGR01373 180 ARHDAVAWGYARGADRRGVDIIQNCEVTGFIRRDGGRVIGVETTRG-FIGAKKVGVAVAGHSSVVAAMAGFRLP 252 (407)
T ss_pred CCHHHHHHHHHHHHHHCCCEEEeCCEEEEEEEcCCCcEEEEEeCCc-eEECCEEEECCChhhHHHHHHcCCCCC
Confidence 44556666666655 35999999999999764 3443 4655666 68886 678889998899988776544
No 70
>PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1.1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A ....
Probab=97.61 E-value=0.0013 Score=58.80 Aligned_cols=69 Identities=25% Similarity=0.323 Sum_probs=54.3
Q ss_pred cceeeeHHHHHHHHHhhC--CCCcEEecceEEEEEeeCCeeE-EEecCCCEEeecEEEecCCCchhh-hhhhCC
Q 021278 7 EMRCVRRKLLLETLAKEL--PSGTIRYSSQVVSIEESGHFKL-LHLADGTILKTKVLIGCDGVNSIV-AKWLGF 76 (315)
Q Consensus 7 ~~~~i~R~~L~~~L~~~~--~~~~i~~~~~v~~~~~~~~~~~-v~~~~g~~~~ad~vVgADG~~S~v-r~~l~~ 76 (315)
....++-..|.+.|.+.+ .+++++.+++|++++.++++++ |...+|+ ++||.||-|.|.+|.- .+.++.
T Consensus 140 ~~g~i~~~~l~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~v~gv~~~~g~-i~ad~vV~a~G~~s~~l~~~~~~ 212 (358)
T PF01266_consen 140 EGGVIDPRRLIQALAAEAQRAGVEIRTGTEVTSIDVDGGRVTGVRTSDGE-IRADRVVLAAGAWSPQLLPLLGL 212 (358)
T ss_dssp TEEEEEHHHHHHHHHHHHHHTT-EEEESEEEEEEEEETTEEEEEEETTEE-EEECEEEE--GGGHHHHHHTTTT
T ss_pred ccccccccchhhhhHHHHHHhhhhccccccccchhhcccccccccccccc-cccceeEecccccceeeeecccc
Confidence 445678888888888876 4699999999999999999988 9999998 9999999999998755 334444
No 71
>TIGR03197 MnmC_Cterm tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal domain. In Escherichia coli, the protein previously designated YfcK is now identified as the bifunctional enzyme MnmC. It acts, following the action of the heterotetramer of GidA and MnmE, in the modification of U-34 of certain tRNA to 5-methylaminomethyl-2-thiouridine (mnm5s2U). In other bacterial, the corresponding proteins are usually but always found as a single polypeptide chain, but occasionally as the product of tandem genes. This model represents the C-terminal region of the multifunctional protein.
Probab=97.56 E-value=0.003 Score=57.44 Aligned_cols=60 Identities=18% Similarity=0.262 Sum_probs=51.2
Q ss_pred eeeHHHHHHHHHhhCC-CCcEEecceEEEEEeeCCeeEEEecCCCEEeecEEEecCCCchh
Q 021278 10 CVRRKLLLETLAKELP-SGTIRYSSQVVSIEESGHFKLLHLADGTILKTKVLIGCDGVNSI 69 (315)
Q Consensus 10 ~i~R~~L~~~L~~~~~-~~~i~~~~~v~~~~~~~~~~~v~~~~g~~~~ad~vVgADG~~S~ 69 (315)
.++-..+.+.|.+++. +++++.+++|++++.+++++.|...+|+.++||.||-|.|.++.
T Consensus 131 ~idp~~~~~~l~~~~~~G~~i~~~~~V~~i~~~~~~~~v~t~~g~~~~a~~vV~a~G~~~~ 191 (381)
T TIGR03197 131 WLSPPQLCRALLAHAGIRLTLHFNTEITSLERDGEGWQLLDANGEVIAASVVVLANGAQAG 191 (381)
T ss_pred ccChHHHHHHHHhccCCCcEEEeCCEEEEEEEcCCeEEEEeCCCCEEEcCEEEEcCCcccc
Confidence 4677788888887764 58999999999999887788888888888999999999999874
No 72
>PRK11883 protoporphyrinogen oxidase; Reviewed
Probab=97.50 E-value=0.0075 Score=55.98 Aligned_cols=56 Identities=27% Similarity=0.379 Sum_probs=44.7
Q ss_pred HHHHHHHhhCCCCcEEecceEEEEEeeCCeeEEEecCCCEEeecEEEecCCCchhh
Q 021278 15 LLLETLAKELPSGTIRYSSQVVSIEESGHFKLLHLADGTILKTKVLIGCDGVNSIV 70 (315)
Q Consensus 15 ~L~~~L~~~~~~~~i~~~~~v~~~~~~~~~~~v~~~~g~~~~ad~vVgADG~~S~v 70 (315)
.|.+.|.+.++..+|+++++|++|+.+++++.|.+.+|++++||.||.|--.....
T Consensus 222 ~l~~~l~~~l~~~~i~~~~~V~~i~~~~~~~~v~~~~g~~~~~d~vI~a~p~~~~~ 277 (451)
T PRK11883 222 SLIEALEEKLPAGTIHKGTPVTKIDKSGDGYEIVLSNGGEIEADAVIVAVPHPVLP 277 (451)
T ss_pred HHHHHHHHhCcCCeEEeCCEEEEEEEcCCeEEEEECCCCEEEcCEEEECCCHHHHH
Confidence 35555666554447999999999999888888999999999999999997765433
No 73
>PRK12416 protoporphyrinogen oxidase; Provisional
Probab=97.50 E-value=0.0054 Score=57.27 Aligned_cols=60 Identities=10% Similarity=0.202 Sum_probs=47.5
Q ss_pred HHHHHHHhhCCCCcEEecceEEEEEeeCCeeEEEecCCCEEeecEEEecCCCchhhhhhhC
Q 021278 15 LLLETLAKELPSGTIRYSSQVVSIEESGHFKLLHLADGTILKTKVLIGCDGVNSIVAKWLG 75 (315)
Q Consensus 15 ~L~~~L~~~~~~~~i~~~~~v~~~~~~~~~~~v~~~~g~~~~ad~vVgADG~~S~vr~~l~ 75 (315)
.|.+.|.+.+++++|+++++|.+|+.+++++.|...+|+++.||.||.|--. ...++.+.
T Consensus 227 ~l~~~l~~~l~~~~i~~~~~V~~I~~~~~~~~v~~~~g~~~~ad~VI~a~p~-~~~~~ll~ 286 (463)
T PRK12416 227 TIIDRLEEVLTETVVKKGAVTTAVSKQGDRYEISFANHESIQADYVVLAAPH-DIAETLLQ 286 (463)
T ss_pred HHHHHHHHhcccccEEcCCEEEEEEEcCCEEEEEECCCCEEEeCEEEECCCH-HHHHhhcC
Confidence 4667777776557899999999999988888898888889999999998843 33455553
No 74
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=97.45 E-value=0.0038 Score=61.07 Aligned_cols=60 Identities=20% Similarity=0.216 Sum_probs=51.1
Q ss_pred eeeHHHHHHHHHhhCC-CCcEEecceEEEEEeeCCeeEEEecCCCEEeecEEEecCCCchh
Q 021278 10 CVRRKLLLETLAKELP-SGTIRYSSQVVSIEESGHFKLLHLADGTILKTKVLIGCDGVNSI 69 (315)
Q Consensus 10 ~i~R~~L~~~L~~~~~-~~~i~~~~~v~~~~~~~~~~~v~~~~g~~~~ad~vVgADG~~S~ 69 (315)
.++...|.+.|.+.+. +++++++++|++++.+++++.|...+|..++||.||.|+|.+|.
T Consensus 404 ~v~p~~l~~aL~~~a~~Gv~i~~~~~V~~i~~~~~~~~v~t~~g~~~~ad~VV~A~G~~s~ 464 (662)
T PRK01747 404 WLCPAELCRALLALAGQQLTIHFGHEVARLEREDDGWQLDFAGGTLASAPVVVLANGHDAA 464 (662)
T ss_pred eeCHHHHHHHHHHhcccCcEEEeCCEeeEEEEeCCEEEEEECCCcEEECCEEEECCCCCcc
Confidence 3567788888888764 48999999999999888888888888888899999999999974
No 75
>PRK07233 hypothetical protein; Provisional
Probab=97.45 E-value=0.013 Score=54.08 Aligned_cols=59 Identities=22% Similarity=0.230 Sum_probs=44.7
Q ss_pred HHHHHHHhhCC--CCcEEecceEEEEEeeCCeeEEEecCCCEEeecEEEecCCCchhhhhhh
Q 021278 15 LLLETLAKELP--SGTIRYSSQVVSIEESGHFKLLHLADGTILKTKVLIGCDGVNSIVAKWL 74 (315)
Q Consensus 15 ~L~~~L~~~~~--~~~i~~~~~v~~~~~~~~~~~v~~~~g~~~~ad~vVgADG~~S~vr~~l 74 (315)
.|.+.|.+.+. +++|+.+++|++++.+++++++...++.+++||.||.|-..+. +.+.+
T Consensus 199 ~l~~~l~~~l~~~g~~v~~~~~V~~i~~~~~~~~~~~~~~~~~~ad~vI~a~p~~~-~~~ll 259 (434)
T PRK07233 199 TLIDALAEAIEARGGEIRLGTPVTSVVIDGGGVTGVEVDGEEEDFDAVISTAPPPI-LARLV 259 (434)
T ss_pred HHHHHHHHHHHhcCceEEeCCCeeEEEEcCCceEEEEeCCceEECCEEEECCCHHH-HHhhc
Confidence 35666666553 5899999999999988777765557778999999999988754 34444
No 76
>PF01593 Amino_oxidase: Flavin containing amine oxidoreductase This is a subset of the Pfam family; InterPro: IPR002937 This entry consists of various amine oxidases, including maize polyamine oxidase (PAO) [], L-amino acid oxidases (LAO) and various flavin containing monoamine oxidases (MAO). The aligned region includes the flavin binding site of these enzymes. In vertebrates MAO plays an important role in regulating the intracellular levels of amines via their oxidation; these include various neurotransmitters, neurotoxins and trace amines []. In lower eukaryotes such as aspergillus and in bacteria the main role of amine oxidases is to provide a source of ammonium []. PAOs in plants, bacteria and protozoa oxidise spermidine and spermine to an aminobutyral, diaminopropane and hydrogen peroxide and are involved in the catabolism of polyamines []. Other members of this family include tryptophan 2-monooxygenase, putrescine oxidase, corticosteroid binding proteins and antibacterial glycoproteins.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2Z3Y_A 2UXN_A 2Y48_A 2HKO_A 2XAF_A 2X0L_A 2XAJ_A 2UXX_A 2V1D_A 2Z5U_A ....
Probab=97.37 E-value=0.002 Score=58.97 Aligned_cols=46 Identities=20% Similarity=0.268 Sum_probs=39.9
Q ss_pred CCcEEecceEEEEEeeCCeeEEEecCCCEEeecEEEecCCCchhhh
Q 021278 26 SGTIRYSSQVVSIEESGHFKLLHLADGTILKTKVLIGCDGVNSIVA 71 (315)
Q Consensus 26 ~~~i~~~~~v~~~~~~~~~~~v~~~~g~~~~ad~vVgADG~~S~vr 71 (315)
+.+|+++++|++|+.++++++|.+++|++++||.||.|=......+
T Consensus 223 g~~i~l~~~V~~I~~~~~~v~v~~~~g~~~~ad~VI~a~p~~~l~~ 268 (450)
T PF01593_consen 223 GGEIRLNTPVTRIEREDGGVTVTTEDGETIEADAVISAVPPSVLKN 268 (450)
T ss_dssp GGGEESSEEEEEEEEESSEEEEEETTSSEEEESEEEE-S-HHHHHT
T ss_pred CceeecCCcceeccccccccccccccceEEecceeeecCchhhhhh
Confidence 4599999999999999999999999999999999999988776655
No 77
>PRK00711 D-amino acid dehydrogenase small subunit; Validated
Probab=97.26 E-value=0.041 Score=50.52 Aligned_cols=65 Identities=18% Similarity=0.202 Sum_probs=46.3
Q ss_pred eHHHHHHHHHhhC--CCCcEEecceEEEEEeeCCeeE-EEecCCCEEeecEEEecCCCchhh-hhhhCCC
Q 021278 12 RRKLLLETLAKEL--PSGTIRYSSQVVSIEESGHFKL-LHLADGTILKTKVLIGCDGVNSIV-AKWLGFK 77 (315)
Q Consensus 12 ~R~~L~~~L~~~~--~~~~i~~~~~v~~~~~~~~~~~-v~~~~g~~~~ad~vVgADG~~S~v-r~~l~~~ 77 (315)
+=..+.+.|.+.+ .+++|+.+++|++++.+++++. |... +.+++||.||-|.|.+|.- -+.++..
T Consensus 199 ~p~~~~~~l~~~~~~~G~~i~~~~~V~~i~~~~~~~~~v~t~-~~~~~a~~VV~a~G~~~~~l~~~~g~~ 267 (416)
T PRK00711 199 DCQLFTQRLAAMAEQLGVKFRFNTPVDGLLVEGGRITGVQTG-GGVITADAYVVALGSYSTALLKPLGVD 267 (416)
T ss_pred CHHHHHHHHHHHHHHCCCEEEcCCEEEEEEecCCEEEEEEeC-CcEEeCCEEEECCCcchHHHHHHhCCC
Confidence 3346666666654 4699999999999988777653 5444 4589999999999998842 3334443
No 78
>PLN02612 phytoene desaturase
Probab=97.22 E-value=0.019 Score=55.08 Aligned_cols=60 Identities=22% Similarity=0.336 Sum_probs=44.0
Q ss_pred HHHHHHHhhC--CCCcEEecceEEEEEeeCCe--eEEEecCCCEEeecEEEecCCCchhhhhhhC
Q 021278 15 LLLETLAKEL--PSGTIRYSSQVVSIEESGHF--KLLHLADGTILKTKVLIGCDGVNSIVAKWLG 75 (315)
Q Consensus 15 ~L~~~L~~~~--~~~~i~~~~~v~~~~~~~~~--~~v~~~~g~~~~ad~vVgADG~~S~vr~~l~ 75 (315)
.|.+.|.+.+ .+++|++|++|.+|+.++++ +.|.+.+|++++||.||-|... ...++.++
T Consensus 309 ~l~~~l~~~l~~~G~~I~l~~~V~~I~~~~~g~v~~v~~~~G~~~~ad~VI~a~p~-~~l~~Ll~ 372 (567)
T PLN02612 309 RLCMPIVDHFQSLGGEVRLNSRIKKIELNDDGTVKHFLLTNGSVVEGDVYVSATPV-DILKLLLP 372 (567)
T ss_pred HHHHHHHHHHHhcCCEEEeCCeeeEEEECCCCcEEEEEECCCcEEECCEEEECCCH-HHHHHhCc
Confidence 3555555543 36899999999999987665 3467788999999999999865 34455543
No 79
>PLN02676 polyamine oxidase
Probab=97.16 E-value=0.0055 Score=57.53 Aligned_cols=57 Identities=18% Similarity=0.208 Sum_probs=47.1
Q ss_pred HHHHHHHHhhCC--------CCcEEecceEEEEEeeCCeeEEEecCCCEEeecEEEecCCCchhh
Q 021278 14 KLLLETLAKELP--------SGTIRYSSQVVSIEESGHFKLLHLADGTILKTKVLIGCDGVNSIV 70 (315)
Q Consensus 14 ~~L~~~L~~~~~--------~~~i~~~~~v~~~~~~~~~~~v~~~~g~~~~ad~vVgADG~~S~v 70 (315)
..|.+.|.+.+. +.+|++|++|.+|+.++++|+|++++|++++||.||.|......-
T Consensus 224 ~~l~~~La~~~~~~~~~~~~~~~I~l~~~V~~I~~~~~gV~V~~~~G~~~~a~~VIvtvPl~vLk 288 (487)
T PLN02676 224 ESLVYYLAEQFLSTKSGKITDPRLKLNKVVREISYSKNGVTVKTEDGSVYRAKYVIVSVSLGVLQ 288 (487)
T ss_pred HHHHHHHHhhcccccccccCCCceecCCEeeEEEEcCCcEEEEECCCCEEEeCEEEEccChHHhc
Confidence 355666666542 357999999999999999999999999999999999999876543
No 80
>TIGR02734 crtI_fam phytoene desaturase. Phytoene is converted to lycopene by desaturation at four (two symmetrical pairs of) sites. This is achieved by two enzymes (crtP and crtQ) in cyanobacteria (Gloeobacter being an exception) and plants, but by a single enzyme in most other bacteria and in fungi. This single enzyme is called the bacterial-type phytoene desaturase, or CrtI. Most members of this family, part of the larger Pfam family pfam01593, which also contains amino oxidases, are CrtI itself; it is likely that all members act on either phytoene or on related compounds such as dehydrosqualene, for carotenoid biosynthesis.
Probab=97.15 E-value=0.054 Score=51.17 Aligned_cols=61 Identities=26% Similarity=0.436 Sum_probs=49.3
Q ss_pred HHHHHHHHhhCC--CCcEEecceEEEEEeeCCe-eEEEecCCCEEeecEEEecCCCchhhhhhh
Q 021278 14 KLLLETLAKELP--SGTIRYSSQVVSIEESGHF-KLLHLADGTILKTKVLIGCDGVNSIVAKWL 74 (315)
Q Consensus 14 ~~L~~~L~~~~~--~~~i~~~~~v~~~~~~~~~-~~v~~~~g~~~~ad~vVgADG~~S~vr~~l 74 (315)
..|.+.|.+.+. +++|+++++|.++..++++ +.|.+++|++++||.||.|=+......+.+
T Consensus 219 ~~l~~al~~~~~~~G~~i~~~~~V~~i~~~~~~~~~V~~~~g~~~~ad~VI~a~~~~~~~~~l~ 282 (502)
T TIGR02734 219 GALVAAMAKLAEDLGGELRLNAEVIRIETEGGRATAVHLADGERLDADAVVSNADLHHTYRRLL 282 (502)
T ss_pred HHHHHHHHHHHHHCCCEEEECCeEEEEEeeCCEEEEEEECCCCEEECCEEEECCcHHHHHHHhc
Confidence 466777776653 5899999999999987766 578888999999999999988877776655
No 81
>PRK11728 hydroxyglutarate oxidase; Provisional
Probab=97.13 E-value=0.0097 Score=54.34 Aligned_cols=68 Identities=25% Similarity=0.449 Sum_probs=55.0
Q ss_pred eeeeHHHHHHHHHhhC--CCCcEEecceEEEEEeeCCeeEEEecCCCEEeecEEEecCCCch-hhhhhhCCC
Q 021278 9 RCVRRKLLLETLAKEL--PSGTIRYSSQVVSIEESGHFKLLHLADGTILKTKVLIGCDGVNS-IVAKWLGFK 77 (315)
Q Consensus 9 ~~i~R~~L~~~L~~~~--~~~~i~~~~~v~~~~~~~~~~~v~~~~g~~~~ad~vVgADG~~S-~vr~~l~~~ 77 (315)
-.++...+.+.|.+.+ .+++++++++|.+++.+++++.|...++ +++||.||.|+|.+| .+.+.+|..
T Consensus 144 g~vd~~~l~~aL~~~~~~~Gv~i~~~~~V~~i~~~~~~~~V~~~~g-~i~ad~vV~A~G~~s~~l~~~~g~~ 214 (393)
T PRK11728 144 GIVDYRAVAEAMAELIQARGGEIRLGAEVTALDEHANGVVVRTTQG-EYEARTLINCAGLMSDRLAKMAGLE 214 (393)
T ss_pred eEECHHHHHHHHHHHHHhCCCEEEcCCEEEEEEecCCeEEEEECCC-EEEeCEEEECCCcchHHHHHHhCCC
Confidence 3567788888888766 3589999999999988777777777666 799999999999998 456777764
No 82
>TIGR03467 HpnE squalene-associated FAD-dependent desaturase. The sequences in this family are members of the pfam01593 superfamily of flavin-containing amine oxidases which include the phytoene desaturases. These sequences also include a FAD-dependent oxidoreductase domain, pfam01266. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of squalene, the condensation product of the polyisoprenoid farnesyl pyrophosphate. This gene and its association with hopene biosynthesis in Zymomonas mobilis has been noted in the literature where the gene symbol hpnE was assigned. This gene is also found in contexts where the downstream conversion of squalene to hopenes is not evidence. The precise nature of the reaction catalyzed by this enzyme is unknown at this time.
Probab=97.01 E-value=0.025 Score=51.88 Aligned_cols=56 Identities=21% Similarity=0.201 Sum_probs=41.0
Q ss_pred HHHHhhC--CCCcEEecceEEEEEeeCCeeEEEe-cCCCEEeecEEEecCCCchhhhhhh
Q 021278 18 ETLAKEL--PSGTIRYSSQVVSIEESGHFKLLHL-ADGTILKTKVLIGCDGVNSIVAKWL 74 (315)
Q Consensus 18 ~~L~~~~--~~~~i~~~~~v~~~~~~~~~~~v~~-~~g~~~~ad~vVgADG~~S~vr~~l 74 (315)
+.|.+.+ .+++|++|++|++|+.+++++++.. .+|+++.||.||.|-..... .+.+
T Consensus 201 ~~l~~~l~~~g~~i~~~~~V~~i~~~~~~~~~~~~~~g~~~~~d~vi~a~p~~~~-~~ll 259 (419)
T TIGR03467 201 EPARRWLDSRGGEVRLGTRVRSIEANAGGIRALVLSGGETLPADAVVLAVPPRHA-ASLL 259 (419)
T ss_pred HHHHHHHHHcCCEEEcCCeeeEEEEcCCcceEEEecCCccccCCEEEEcCCHHHH-HHhC
Confidence 3344443 2589999999999999888766544 46788999999998776543 4444
No 83
>TIGR02730 carot_isom carotene isomerase. Members of this family, including sll0033 (crtH) of Synechocystis sp. PCC 6803, catalyze a cis-trans isomerization of carotenes to the all-trans lycopene, a reaction that can also occur non-enzymatically in light through photoisomerization.
Probab=96.83 E-value=0.053 Score=51.15 Aligned_cols=62 Identities=27% Similarity=0.297 Sum_probs=49.6
Q ss_pred HHHHHHHHhhC--CCCcEEecceEEEEEeeCCe-eEEEecCCCEEeecEEEecCCCchhhhhhhC
Q 021278 14 KLLLETLAKEL--PSGTIRYSSQVVSIEESGHF-KLLHLADGTILKTKVLIGCDGVNSIVAKWLG 75 (315)
Q Consensus 14 ~~L~~~L~~~~--~~~~i~~~~~v~~~~~~~~~-~~v~~~~g~~~~ad~vVgADG~~S~vr~~l~ 75 (315)
..|.+.|.+.+ .+++|+++++|.++..++++ ..|.+.+|++++||.||.|=|....+++.++
T Consensus 229 ~~l~~~L~~~~~~~G~~i~~~~~V~~I~~~~~~~~gv~~~~g~~~~ad~vV~a~~~~~~~~~Ll~ 293 (493)
T TIGR02730 229 GQIAESLVKGLEKHGGQIRYRARVTKIILENGKAVGVKLADGEKIYAKRIVSNATRWDTFGKLLK 293 (493)
T ss_pred HHHHHHHHHHHHHCCCEEEeCCeeeEEEecCCcEEEEEeCCCCEEEcCEEEECCChHHHHHHhCC
Confidence 45666676665 35999999999999876554 5677888999999999999998888877764
No 84
>PRK13369 glycerol-3-phosphate dehydrogenase; Provisional
Probab=96.80 E-value=0.1 Score=49.37 Aligned_cols=67 Identities=19% Similarity=0.191 Sum_probs=49.4
Q ss_pred eeHHHHHHHHHhhC--CCCcEEecceEEEEEeeCCeeEEEecCC----CEEeecEEEecCCCchh-hhh-hhCCC
Q 021278 11 VRRKLLLETLAKEL--PSGTIRYSSQVVSIEESGHFKLLHLADG----TILKTKVLIGCDGVNSI-VAK-WLGFK 77 (315)
Q Consensus 11 i~R~~L~~~L~~~~--~~~~i~~~~~v~~~~~~~~~~~v~~~~g----~~~~ad~vVgADG~~S~-vr~-~l~~~ 77 (315)
++-..|...|...+ .+++++.+++|+++..+++.+.|...++ .+++|++||.|+|.+|. +.+ .+|..
T Consensus 152 vd~~rl~~~l~~~a~~~Ga~i~~~~~V~~i~~~~~~~~v~~~~~~g~~~~i~a~~VVnAaG~wa~~l~~~~~g~~ 226 (502)
T PRK13369 152 VDDARLVVLNALDAAERGATILTRTRCVSARREGGLWRVETRDADGETRTVRARALVNAAGPWVTDVIHRVAGSN 226 (502)
T ss_pred ecHHHHHHHHHHHHHHCCCEEecCcEEEEEEEcCCEEEEEEEeCCCCEEEEEecEEEECCCccHHHHHhhccCCC
Confidence 45566666666554 4599999999999998877777776654 36999999999999874 344 33543
No 85
>PRK04176 ribulose-1,5-biphosphate synthetase; Provisional
Probab=96.80 E-value=0.0043 Score=53.10 Aligned_cols=68 Identities=13% Similarity=0.107 Sum_probs=53.0
Q ss_pred cceeeeHHHHHHHHHhhC--CCCcEEecceEEEEEeeCC-ee---EEEe----c-----CCCEEeecEEEecCCCchhhh
Q 021278 7 EMRCVRRKLLLETLAKEL--PSGTIRYSSQVVSIEESGH-FK---LLHL----A-----DGTILKTKVLIGCDGVNSIVA 71 (315)
Q Consensus 7 ~~~~i~R~~L~~~L~~~~--~~~~i~~~~~v~~~~~~~~-~~---~v~~----~-----~g~~~~ad~vVgADG~~S~vr 71 (315)
..+.+++..|...|.+++ .+++++.+++|.++..+++ .+ .+.. . +..+++|++||.|+|.+|.+.
T Consensus 97 g~~~vd~~~l~~~L~~~A~~~Gv~I~~~t~V~dl~~~~~g~V~Gvv~~~~~v~~~g~~~~~~~i~Ak~VI~ATG~~a~v~ 176 (257)
T PRK04176 97 GLYVADSVEAAAKLAAAAIDAGAKIFNGVSVEDVILREDPRVAGVVINWTPVEMAGLHVDPLTIEAKAVVDATGHDAEVV 176 (257)
T ss_pred cceeccHHHHHHHHHHHHHHcCCEEEcCceeceeeEeCCCcEEEEEEccccccccCCCCCcEEEEcCEEEEEeCCCcHHH
Confidence 346789999999999876 4599999999999987655 32 2211 1 224799999999999999998
Q ss_pred hhh
Q 021278 72 KWL 74 (315)
Q Consensus 72 ~~l 74 (315)
+.+
T Consensus 177 ~~l 179 (257)
T PRK04176 177 SVL 179 (257)
T ss_pred HHH
Confidence 877
No 86
>PRK12266 glpD glycerol-3-phosphate dehydrogenase; Reviewed
Probab=96.70 E-value=0.093 Score=49.69 Aligned_cols=59 Identities=20% Similarity=0.249 Sum_probs=44.3
Q ss_pred eeHHHHHHHHHhhC--CCCcEEecceEEEEEeeCCeeEEEecC---CC--EEeecEEEecCCCchh
Q 021278 11 VRRKLLLETLAKEL--PSGTIRYSSQVVSIEESGHFKLLHLAD---GT--ILKTKVLIGCDGVNSI 69 (315)
Q Consensus 11 i~R~~L~~~L~~~~--~~~~i~~~~~v~~~~~~~~~~~v~~~~---g~--~~~ad~vVgADG~~S~ 69 (315)
++-..|...|...+ .+++++.+++|+++..+++.+.|...+ |+ +++|+.||.|.|.+|.
T Consensus 152 vd~~rl~~~l~~~A~~~Ga~i~~~~~V~~i~~~~~~~~v~~~~~~~g~~~~i~a~~VVnAaG~wa~ 217 (508)
T PRK12266 152 VDDARLVVLNARDAAERGAEILTRTRVVSARRENGLWHVTLEDTATGKRYTVRARALVNAAGPWVK 217 (508)
T ss_pred cCHHHHHHHHHHHHHHcCCEEEcCcEEEEEEEeCCEEEEEEEEcCCCCEEEEEcCEEEECCCccHH
Confidence 44455555555443 469999999999998877767676654 43 7999999999999873
No 87
>TIGR00292 thiazole biosynthesis enzyme. This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis.
Probab=96.61 E-value=0.009 Score=51.00 Aligned_cols=68 Identities=12% Similarity=0.114 Sum_probs=52.7
Q ss_pred cceeeeHHHHHHHHHhhC--CCCcEEecceEEEEEeeCC--ee-EEEec-----------CCCEEeecEEEecCCCchhh
Q 021278 7 EMRCVRRKLLLETLAKEL--PSGTIRYSSQVVSIEESGH--FK-LLHLA-----------DGTILKTKVLIGCDGVNSIV 70 (315)
Q Consensus 7 ~~~~i~R~~L~~~L~~~~--~~~~i~~~~~v~~~~~~~~--~~-~v~~~-----------~g~~~~ad~vVgADG~~S~v 70 (315)
..+..+|..+.+.|.+++ .+++++.+++|.++..+++ .+ -|... +..+++|++||.|+|..|.+
T Consensus 93 g~~~~~~~el~~~L~~~a~e~GV~I~~~t~V~dli~~~~~~~V~GVv~~~~~v~~~g~~~d~~~i~Ak~VVdATG~~a~v 172 (254)
T TIGR00292 93 GYVVADSAEFISTLASKALQAGAKIFNGTSVEDLITRDDTVGVAGVVINWSAIELAGLHVDPLTQRSRVVVDATGHDAEI 172 (254)
T ss_pred ceEEeeHHHHHHHHHHHHHHcCCEEECCcEEEEEEEeCCCCceEEEEeCCccccccCCCCCCEEEEcCEEEEeecCCchH
Confidence 345678999999999876 3499999999999988766 22 22221 23479999999999999988
Q ss_pred hhhh
Q 021278 71 AKWL 74 (315)
Q Consensus 71 r~~l 74 (315)
.+.+
T Consensus 173 ~~~l 176 (254)
T TIGR00292 173 VAVC 176 (254)
T ss_pred HHHH
Confidence 8777
No 88
>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A ....
Probab=96.56 E-value=0.0068 Score=49.63 Aligned_cols=59 Identities=19% Similarity=0.210 Sum_probs=44.2
Q ss_pred eeHHHHHHHHHhhC--CCCcEEecceEEEEEeeCCeeEEEecCCCEEeecEEEecCCCchh
Q 021278 11 VRRKLLLETLAKEL--PSGTIRYSSQVVSIEESGHFKLLHLADGTILKTKVLIGCDGVNSI 69 (315)
Q Consensus 11 i~R~~L~~~L~~~~--~~~~i~~~~~v~~~~~~~~~~~v~~~~g~~~~ad~vVgADG~~S~ 69 (315)
..+.++.+.|.+-+ -+.+++++++|++++.+++++.|+++++++++||.||.|.|..|.
T Consensus 79 ~~~~~v~~yl~~~~~~~~l~i~~~~~V~~v~~~~~~w~v~~~~~~~~~a~~VVlAtG~~~~ 139 (203)
T PF13738_consen 79 PSGEEVLDYLQEYAERFGLEIRFNTRVESVRRDGDGWTVTTRDGRTIRADRVVLATGHYSH 139 (203)
T ss_dssp EBHHHHHHHHHHHHHHTTGGEETS--EEEEEEETTTEEEEETTS-EEEEEEEEE---SSCS
T ss_pred CCHHHHHHHHHHHHhhcCcccccCCEEEEEEEeccEEEEEEEecceeeeeeEEEeeeccCC
Confidence 66777777776644 246799999999999999899999999999999999999998764
No 89
>PLN02268 probable polyamine oxidase
Probab=96.42 E-value=0.071 Score=49.34 Aligned_cols=42 Identities=19% Similarity=0.124 Sum_probs=37.5
Q ss_pred CCcEEecceEEEEEeeCCeeEEEecCCCEEeecEEEecCCCc
Q 021278 26 SGTIRYSSQVVSIEESGHFKLLHLADGTILKTKVLIGCDGVN 67 (315)
Q Consensus 26 ~~~i~~~~~v~~~~~~~~~~~v~~~~g~~~~ad~vVgADG~~ 67 (315)
+++|+++++|++|...+++++|++.+|+++.||.||.|--..
T Consensus 210 ~~~i~~~~~V~~i~~~~~~v~v~~~~g~~~~ad~VIva~P~~ 251 (435)
T PLN02268 210 GLDIRLNHRVTKIVRRYNGVKVTVEDGTTFVADAAIIAVPLG 251 (435)
T ss_pred cCceeCCCeeEEEEEcCCcEEEEECCCcEEEcCEEEEecCHH
Confidence 467999999999999888899999999999999999997544
No 90
>TIGR03329 Phn_aa_oxid putative aminophosphonate oxidoreductase. This clade of sequences are members of the pfam01266 family of FAD-dependent oxidoreductases. Characterized proteins within this family include glycerol-3-phosphate dehydrogenase (1.1.99.5), sarcosine oxidase beta subunit (1.5.3.1) and a number of deaminating amino acid oxidases (1.4.-.-). These genes have been consistently observed in a genomic context including genes for the import and catabolism of 2-aminoethylphosphonate (AEP). If the substrate of this oxidoreductase is AEP itself, then it is probably acting in the manner of a deaminating oxidase, resulting in the same product (phosphonoacetaldehyde) as the transaminase PhnW (TIGR02326), but releasing ammonia instead of coupling to pyruvate:alanine. Alternatively, it is reasonable to suppose that the various ABC cassette transporters which are also associated with these loci allow the import of phosphonates closely related to AEP which may not be substrates for PhnW.
Probab=96.41 E-value=0.049 Score=50.86 Aligned_cols=58 Identities=17% Similarity=0.204 Sum_probs=44.5
Q ss_pred eeeHHHHHHHHHhhC--CCCcEEecceEEEEEeeCCeeEEEecCCCEEeecEEEecCCCchh
Q 021278 10 CVRRKLLLETLAKEL--PSGTIRYSSQVVSIEESGHFKLLHLADGTILKTKVLIGCDGVNSI 69 (315)
Q Consensus 10 ~i~R~~L~~~L~~~~--~~~~i~~~~~v~~~~~~~~~~~v~~~~g~~~~ad~vVgADG~~S~ 69 (315)
.++-..|.+.|.+.+ .+++|+.+++|++++. ++.+.|...+| +++||.||.|-|.+|.
T Consensus 179 ~i~P~~l~~~L~~~a~~~Gv~i~~~t~V~~i~~-~~~~~v~t~~g-~v~A~~VV~Atga~s~ 238 (460)
T TIGR03329 179 SVQPGLLVRGLRRVALELGVEIHENTPMTGLEE-GQPAVVRTPDG-QVTADKVVLALNAWMA 238 (460)
T ss_pred EECHHHHHHHHHHHHHHcCCEEECCCeEEEEee-CCceEEEeCCc-EEECCEEEEccccccc
Confidence 456677778887765 3599999999999975 44456666655 6999999999998864
No 91
>PLN02576 protoporphyrinogen oxidase
Probab=96.38 E-value=0.15 Score=48.01 Aligned_cols=52 Identities=19% Similarity=0.268 Sum_probs=39.1
Q ss_pred HHHHHHHhhCCCCcEEecceEEEEEeeCCe-eEEEec--CCC-EEeecEEEecCCC
Q 021278 15 LLLETLAKELPSGTIRYSSQVVSIEESGHF-KLLHLA--DGT-ILKTKVLIGCDGV 66 (315)
Q Consensus 15 ~L~~~L~~~~~~~~i~~~~~v~~~~~~~~~-~~v~~~--~g~-~~~ad~vVgADG~ 66 (315)
.|.+.|.+.++..+|++|++|++|+..+++ +.|.++ +|+ +++||.||-|--.
T Consensus 240 ~L~~~la~~l~~~~i~l~~~V~~I~~~~~~~~~v~~~~~~g~~~~~ad~VI~a~P~ 295 (496)
T PLN02576 240 TLPDALAKRLGKDKVKLNWKVLSLSKNDDGGYSLTYDTPEGKVNVTAKAVVMTAPL 295 (496)
T ss_pred HHHHHHHHhhCcCcEEcCCEEEEEEECCCCcEEEEEecCCCceeEEeCEEEECCCH
Confidence 466777766644689999999999988776 666654 453 7999999998643
No 92
>TIGR02733 desat_CrtD C-3',4' desaturase CrtD. Members of this family are slr1293, a carotenoid biosynthesis protein which was shown to be the C-3',4' desaturase (CrtD) of myxoxanthophyll biosynthesis in Synechocystis sp. strain PCC 6803, and close homologs (presumed to be functionally equivalent) from other cyanobacteria, where myxoxanthophyll biosynthesis is either known or expected. This enzyme can act on neurosporene and so presumably catalyzes the first step that is committed to myxoxanthophyll.
Probab=96.00 E-value=1.1 Score=42.12 Aligned_cols=60 Identities=18% Similarity=0.233 Sum_probs=41.4
Q ss_pred HHHHHHHHhhC--CCCcEEecceEEEEEeeCCe-eEEEecCC-----CEEeecEEEecCCCchhhhhhh
Q 021278 14 KLLLETLAKEL--PSGTIRYSSQVVSIEESGHF-KLLHLADG-----TILKTKVLIGCDGVNSIVAKWL 74 (315)
Q Consensus 14 ~~L~~~L~~~~--~~~~i~~~~~v~~~~~~~~~-~~v~~~~g-----~~~~ad~vVgADG~~S~vr~~l 74 (315)
..|-+.|.+.+ .+++|+++++|.+|..++++ ..|...++ ++++||.||.+=..+-. .+.+
T Consensus 232 ~~l~~aL~~~~~~~G~~i~~~~~V~~I~~~~~~~~gv~~~~~~~~~~~~~~ad~VI~~~~~~~~-~~ll 299 (492)
T TIGR02733 232 QTLSDRLVEALKRDGGNLLTGQRVTAIHTKGGRAGWVVVVDSRKQEDLNVKADDVVANLPPQSL-LELL 299 (492)
T ss_pred HHHHHHHHHHHHhcCCEEeCCceEEEEEEeCCeEEEEEEecCCCCceEEEECCEEEECCCHHHH-HHhc
Confidence 34666666665 46899999999999987764 23444444 57899999888766433 3444
No 93
>PLN02976 amine oxidase
Probab=95.94 E-value=0.52 Score=49.47 Aligned_cols=49 Identities=12% Similarity=0.102 Sum_probs=38.1
Q ss_pred HHHHHHHhhCCCCcEEecceEEEEEee----------CCeeEEEecCCCEEeecEEEecCCC
Q 021278 15 LLLETLAKELPSGTIRYSSQVVSIEES----------GHFKLLHLADGTILKTKVLIGCDGV 66 (315)
Q Consensus 15 ~L~~~L~~~~~~~~i~~~~~v~~~~~~----------~~~~~v~~~~g~~~~ad~vVgADG~ 66 (315)
.|.+.|.+. ..|++|+.|+.|... +++|.|++.+|++++||.||.+==.
T Consensus 937 qLIeALAe~---L~IrLNtpVtrId~s~~d~~~~~s~~dGVtVtTsDGetftADaVIVTVPL 995 (1713)
T PLN02976 937 NVVESLAEG---LDIHLNHVVTDVSYGSKDAGASGSSRKKVKVSTSNGSEFLGDAVLITVPL 995 (1713)
T ss_pred HHHHHHHhh---CCeecCCeEEEEEecCCcccccccCCCcEEEEECCCCEEEeceEEEeCCH
Confidence 445555554 459999999999884 3568999999999999999987543
No 94
>PLN02328 lysine-specific histone demethylase 1 homolog
Probab=95.85 E-value=0.57 Score=46.62 Aligned_cols=50 Identities=22% Similarity=0.250 Sum_probs=39.5
Q ss_pred HHHHHHHhhCCCCcEEecceEEEEEeeCCeeEEEecCCCEEeecEEEecCCCch
Q 021278 15 LLLETLAKELPSGTIRYSSQVVSIEESGHFKLLHLADGTILKTKVLIGCDGVNS 68 (315)
Q Consensus 15 ~L~~~L~~~~~~~~i~~~~~v~~~~~~~~~~~v~~~~g~~~~ad~vVgADG~~S 68 (315)
.|.+.|.+.+ .|++|+.|++|...+++|.| ..+|++++||.||.+--..-
T Consensus 438 ~Li~aLa~~L---~I~ln~~V~~I~~~~dgV~V-~~~G~~~~AD~VIvTvPl~v 487 (808)
T PLN02328 438 TFVRELAKDL---PIFYERTVESIRYGVDGVIV-YAGGQEFHGDMVLCTVPLGV 487 (808)
T ss_pred HHHHHHHhhC---CcccCCeeEEEEEcCCeEEE-EeCCeEEEcCEEEECCCHHH
Confidence 4555555544 59999999999999888877 46788999999999876654
No 95
>COG1231 Monoamine oxidase [Amino acid transport and metabolism]
Probab=95.59 E-value=1.4 Score=40.30 Aligned_cols=209 Identities=16% Similarity=0.078 Sum_probs=107.6
Q ss_pred HHHHhhCC---CCcEEecceEEEEEeeCCeeEEEecCCCEEeecEEEecCCCchhhhhhhCCCCC--ccc--------cc
Q 021278 18 ETLAKELP---SGTIRYSSQVVSIEESGHFKLLHLADGTILKTKVLIGCDGVNSIVAKWLGFKNP--AFV--------GR 84 (315)
Q Consensus 18 ~~L~~~~~---~~~i~~~~~v~~~~~~~~~~~v~~~~g~~~~ad~vVgADG~~S~vr~~l~~~~~--~~~--------~~ 84 (315)
+.|.+++. +..|.++.+|..|.+++++|+|++.+..++.+||+|++==.. +..++...++ ... ..
T Consensus 209 d~la~Afa~ql~~~I~~~~~V~rI~q~~~gV~Vt~~~~~~~~ad~~i~tiPl~--~l~qI~f~P~l~~~~~~a~~~~~y~ 286 (450)
T COG1231 209 DQLAEAFAKQLGTRILLNEPVRRIDQDGDGVTVTADDVGQYVADYVLVTIPLA--ILGQIDFAPLLPAEYKQAAKGVPYG 286 (450)
T ss_pred HHHHHHHHHHhhceEEecCceeeEEEcCCeEEEEeCCcceEEecEEEEecCHH--HHhhcccCCCCCHHHHHHhcCcCcc
Confidence 44444442 268999999999999999999999998899999999874432 2333322211 110 11
Q ss_pred eEEEeeeecCCCCCC--C-CceEEEecCCeEEEEEecC---CCeEEEEEEee-CCCCCcccccChHHHHHHHHHHhcCCC
Q 021278 85 SAIRGYSDFKGSHGF--E-PNFLQFFGKGLRSGFIPCD---DQTIYWFFTWT-SSSQDKELEDHSAELKQFVLGKLHDLP 157 (315)
Q Consensus 85 ~~~~~~~~~~~~~~~--~-~~~~~~~~~~~~~~~~p~~---~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (315)
......+.++.+.-. . -....+.+....+..+|.+ ++.......+. .+....-...++++..+..+..+..+.
T Consensus 287 ~~~K~~v~f~rpFWee~~~l~G~~~tD~~~~~i~~~s~~~~~G~gVl~g~~~~g~~A~~~~~~~~~~r~~~vl~~l~~~~ 366 (450)
T COG1231 287 SATKIGVAFSRPFWEEAGILGGESLTDLGLGFISYPSAPFADGPGVLLGSYAFGDDALVIDALPEAERRQKVLARLAKLF 366 (450)
T ss_pred hheeeeeecCchhhhhcccCCceEeecCCcceEecCccccCCCceEEEeeeeccccceeEecCCHHHHHHHHHHhHhhhC
Confidence 122233444433211 1 1223444445555566655 44322222111 222222245667777777777766544
Q ss_pred h-HHHHHHHcCCCcceeecccccc-----Ccccc--cccCc--CCCcEEEec-cCCCCCCCCCccchhhhhhHHHHHHHH
Q 021278 158 A-QVKAVIEKTPLDSIISSRLQYR-----QPQEV--LWGNI--SRGSVCVAG-DALHPMTPDIGQGGCAALEDGIVLARC 226 (315)
Q Consensus 158 ~-~~~~~~~~~~~~~~~~~~~~~~-----~~~~~--~~~~~--~~~~v~LiG-DAAh~~~P~~G~G~~~al~da~~La~~ 226 (315)
+ ....-++....-.++..+.... .+... .-..+ -.|||.++| . ..|..+.=+--||+++...+..
T Consensus 367 g~~a~~~f~~~~~~~W~~dpwt~G~~aa~~~g~~~~~~~~l~~p~gRIh~AgtE----has~~~Gw~eGAi~Sg~~AA~e 442 (450)
T COG1231 367 GDEAADPFDYGASVDWSKDPWTLGGTAAYPPGQRTKLYPTLPAPHGRIHFAGTE----HASEFGGWLEGAIRSGQRAAAE 442 (450)
T ss_pred ChhhccccccceeeecccCCcCCccccccCCcccccccccccCCCCceEEeeec----ccccccchhHHHHHHHHHHHHH
Confidence 4 3333333211111111111111 11000 00011 357888888 4 3455555566788888888877
Q ss_pred HHHHHh
Q 021278 227 INEALK 232 (315)
Q Consensus 227 l~~~~~ 232 (315)
|...+.
T Consensus 443 i~~~l~ 448 (450)
T COG1231 443 IHALLS 448 (450)
T ss_pred HHHhhc
Confidence 766443
No 96
>PLN02568 polyamine oxidase
Probab=95.54 E-value=0.047 Score=51.93 Aligned_cols=60 Identities=28% Similarity=0.383 Sum_probs=50.2
Q ss_pred ceeeeHH--HHHHHHHhhCCCCcEEecceEEEEEeeCCeeEEEecCCCEEeecEEEecCCCc
Q 021278 8 MRCVRRK--LLLETLAKELPSGTIRYSSQVVSIEESGHFKLLHLADGTILKTKVLIGCDGVN 67 (315)
Q Consensus 8 ~~~i~R~--~L~~~L~~~~~~~~i~~~~~v~~~~~~~~~~~v~~~~g~~~~ad~vVgADG~~ 67 (315)
.+.+... .|.+.|.+.+++..|++|++|+.|+.+++++.|++.+|++++||.||.+=-..
T Consensus 234 ~~~i~gG~~~Li~~La~~L~~~~I~ln~~V~~I~~~~~~v~V~~~dG~~~~aD~VIvTvPl~ 295 (539)
T PLN02568 234 EITIAKGYLSVIEALASVLPPGTIQLGRKVTRIEWQDEPVKLHFADGSTMTADHVIVTVSLG 295 (539)
T ss_pred eEEECCcHHHHHHHHHhhCCCCEEEeCCeEEEEEEeCCeEEEEEcCCCEEEcCEEEEcCCHH
Confidence 3445443 38888888887778999999999999999999999999999999999986654
No 97
>PRK05257 malate:quinone oxidoreductase; Validated
Probab=95.46 E-value=0.094 Score=49.39 Aligned_cols=70 Identities=14% Similarity=0.089 Sum_probs=50.9
Q ss_pred eeeeHHHHHHHHHhhCC--C-CcEEecceEEEEEeeCCe-eEEEec---CCC--EEeecEEEecCC-CchhhhhhhCCCC
Q 021278 9 RCVRRKLLLETLAKELP--S-GTIRYSSQVVSIEESGHF-KLLHLA---DGT--ILKTKVLIGCDG-VNSIVAKWLGFKN 78 (315)
Q Consensus 9 ~~i~R~~L~~~L~~~~~--~-~~i~~~~~v~~~~~~~~~-~~v~~~---~g~--~~~ad~vVgADG-~~S~vr~~l~~~~ 78 (315)
..++-..+.+.|.+.+. + ++|+++++|++++.++++ +.|... +|+ +++|++||.|.| ..+.+++.+|+..
T Consensus 178 g~Vd~~~l~~aL~~~a~~~Ggv~i~~~teV~~I~~~~dg~~~v~~~~~~~G~~~~i~A~~VVvaAGg~s~~L~~~~Gi~~ 257 (494)
T PRK05257 178 TDVNFGALTRQLVGYLQKQGNFELQLGHEVRDIKRNDDGSWTVTVKDLKTGEKRTVRAKFVFIGAGGGALPLLQKSGIPE 257 (494)
T ss_pred eEECHHHHHHHHHHHHHhCCCeEEEeCCEEEEEEECCCCCEEEEEEEcCCCceEEEEcCEEEECCCcchHHHHHHcCCCc
Confidence 35777788888887663 3 799999999999986654 666543 353 699998865555 5556788877763
No 98
>COG0579 Predicted dehydrogenase [General function prediction only]
Probab=95.43 E-value=0.31 Score=44.66 Aligned_cols=69 Identities=25% Similarity=0.311 Sum_probs=53.3
Q ss_pred eeeHHHHHHHHHhhC--CCCcEEecceEEEEEeeCCe-eEEEecCCCE-EeecEEEecCCCchhh-hhhhCCCC
Q 021278 10 CVRRKLLLETLAKEL--PSGTIRYSSQVVSIEESGHF-KLLHLADGTI-LKTKVLIGCDGVNSIV-AKWLGFKN 78 (315)
Q Consensus 10 ~i~R~~L~~~L~~~~--~~~~i~~~~~v~~~~~~~~~-~~v~~~~g~~-~~ad~vVgADG~~S~v-r~~l~~~~ 78 (315)
.|+-..+...|.+.+ .++++++|++|+.++.++++ ..+...+|++ ++|++||-|=|.+|-- .+.+|++.
T Consensus 149 iV~~~~~t~~l~e~a~~~g~~i~ln~eV~~i~~~~dg~~~~~~~~g~~~~~ak~Vin~AGl~Ad~la~~~g~~~ 222 (429)
T COG0579 149 IVDPGELTRALAEEAQANGVELRLNTEVTGIEKQSDGVFVLNTSNGEETLEAKFVINAAGLYADPLAQMAGIPE 222 (429)
T ss_pred eEcHHHHHHHHHHHHHHcCCEEEecCeeeEEEEeCCceEEEEecCCcEEEEeeEEEECCchhHHHHHHHhCCCc
Confidence 455555666666654 35999999999999999884 5667778876 9999999999988754 56667765
No 99
>PLN03000 amine oxidase
Probab=95.40 E-value=0.91 Score=45.44 Aligned_cols=48 Identities=15% Similarity=0.198 Sum_probs=37.9
Q ss_pred HHHHHHHhhCCCCcEEecceEEEEEeeCCeeEEEecCCCEEeecEEEecCCC
Q 021278 15 LLLETLAKELPSGTIRYSSQVVSIEESGHFKLLHLADGTILKTKVLIGCDGV 66 (315)
Q Consensus 15 ~L~~~L~~~~~~~~i~~~~~v~~~~~~~~~~~v~~~~g~~~~ad~vVgADG~ 66 (315)
.|.+.|.+.+ .|++++.|++|+..+++++|+.. +++++||.||.+=-.
T Consensus 382 ~LieaLa~~L---~I~Ln~~Vt~I~~~~dgV~V~~~-~~~~~AD~VIvTVPl 429 (881)
T PLN03000 382 RLVQALAENV---PILYEKTVQTIRYGSNGVKVIAG-NQVYEGDMVLCTVPL 429 (881)
T ss_pred HHHHHHHhhC---CcccCCcEEEEEECCCeEEEEEC-CcEEEeceEEEcCCH
Confidence 4555666554 59999999999999999988865 358999999988644
No 100
>PRK13339 malate:quinone oxidoreductase; Reviewed
Probab=95.28 E-value=0.12 Score=48.56 Aligned_cols=71 Identities=20% Similarity=0.184 Sum_probs=53.1
Q ss_pred ceeeeHHHHHHHHHhhC---CCCcEEecceEEEEEee-CCeeEEEe---cCCC--EEeecEEEecCCCch-hhhhhhCCC
Q 021278 8 MRCVRRKLLLETLAKEL---PSGTIRYSSQVVSIEES-GHFKLLHL---ADGT--ILKTKVLIGCDGVNS-IVAKWLGFK 77 (315)
Q Consensus 8 ~~~i~R~~L~~~L~~~~---~~~~i~~~~~v~~~~~~-~~~~~v~~---~~g~--~~~ad~vVgADG~~S-~vr~~l~~~ 77 (315)
...|+...|.+.|.+.+ ++++++++++|++++.+ +++++|.+ .+++ +++||+||-|-|.+| .+.+.+|++
T Consensus 178 ~~~VD~~~L~~aL~~~l~~~~Gv~i~~~~~V~~I~~~~d~~w~v~v~~t~~g~~~~i~Ad~VV~AAGawS~~La~~~Gi~ 257 (497)
T PRK13339 178 GTDVNFGALTRKLAKHLESHPNAQVKYNHEVVDLERLSDGGWEVTVKDRNTGEKREQVADYVFIGAGGGAIPLLQKSGIP 257 (497)
T ss_pred ceecCHHHHHHHHHHHHHhCCCcEEEeCCEEEEEEECCCCCEEEEEEecCCCceEEEEcCEEEECCCcchHHHHHHcCCC
Confidence 35688888888888765 35999999999999877 55677764 3342 689999976666665 567777776
Q ss_pred C
Q 021278 78 N 78 (315)
Q Consensus 78 ~ 78 (315)
+
T Consensus 258 ~ 258 (497)
T PRK13339 258 E 258 (497)
T ss_pred c
Confidence 4
No 101
>COG2081 Predicted flavoproteins [General function prediction only]
Probab=95.20 E-value=0.065 Score=47.93 Aligned_cols=55 Identities=33% Similarity=0.329 Sum_probs=47.7
Q ss_pred HHHHHHHHhhC--CCCcEEecceEEEEEeeCCeeEEEecCCCEEeecEEEecCCCch
Q 021278 14 KLLLETLAKEL--PSGTIRYSSQVVSIEESGHFKLLHLADGTILKTKVLIGCDGVNS 68 (315)
Q Consensus 14 ~~L~~~L~~~~--~~~~i~~~~~v~~~~~~~~~~~v~~~~g~~~~ad~vVgADG~~S 68 (315)
+.+.++|+.++ .+|+|+.+++|.+++.++.+-.+...+|++++||-||-|-|-.|
T Consensus 111 ~~Iv~~ll~~~~~~gV~i~~~~~v~~v~~~~~~f~l~t~~g~~i~~d~lilAtGG~S 167 (408)
T COG2081 111 SPIVDALLKELEALGVTIRTRSRVSSVEKDDSGFRLDTSSGETVKCDSLILATGGKS 167 (408)
T ss_pred HHHHHHHHHHHHHcCcEEEecceEEeEEecCceEEEEcCCCCEEEccEEEEecCCcC
Confidence 56677777776 45999999999999999888889999999999999999999665
No 102
>TIGR01320 mal_quin_oxido malate:quinone-oxidoreductase. This membrane-associated enzyme is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in E. coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase.
Probab=95.17 E-value=0.16 Score=47.74 Aligned_cols=70 Identities=20% Similarity=0.247 Sum_probs=51.8
Q ss_pred eeeeHHHHHHHHHhhC--CCCcEEecceEEEEEeeCC-eeEEEec---CC--CEEeecEE-EecCCCchhhhhhhCCCC
Q 021278 9 RCVRRKLLLETLAKEL--PSGTIRYSSQVVSIEESGH-FKLLHLA---DG--TILKTKVL-IGCDGVNSIVAKWLGFKN 78 (315)
Q Consensus 9 ~~i~R~~L~~~L~~~~--~~~~i~~~~~v~~~~~~~~-~~~v~~~---~g--~~~~ad~v-VgADG~~S~vr~~l~~~~ 78 (315)
-.|+-..|.+.|.+.+ .+++++++++|++++.+++ ++.|... +| .+++||+| ++|+|..+.+++.+|+..
T Consensus 173 g~Vdp~~l~~aL~~~a~~~Gv~i~~~t~V~~i~~~~~~~v~v~~~~~~~g~~~~i~A~~VV~AAG~~s~~La~~~Gi~~ 251 (483)
T TIGR01320 173 TDVDFGALTKQLLGYLVQNGTTIRFGHEVRNLKRQSDGSWTVTVKNTRTGGKRTLNTRFVFVGAGGGALPLLQKSGIPE 251 (483)
T ss_pred EEECHHHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCCeEEEEEeeccCCceEEEECCEEEECCCcchHHHHHHcCCCc
Confidence 3577788888888776 3699999999999988654 4666532 34 26899998 555666677788888774
No 103
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=95.15 E-value=0.1 Score=47.29 Aligned_cols=53 Identities=17% Similarity=0.236 Sum_probs=43.2
Q ss_pred CCCcEEecceEEEEEeeCCeeEEEecCCCEEeecEEEecCCCchh--hhhhhCCC
Q 021278 25 PSGTIRYSSQVVSIEESGHFKLLHLADGTILKTKVLIGCDGVNSI--VAKWLGFK 77 (315)
Q Consensus 25 ~~~~i~~~~~v~~~~~~~~~~~v~~~~g~~~~ad~vVgADG~~S~--vr~~l~~~ 77 (315)
.++++++++++.+++.+++++.|.+.+|+++.+|+||.|.|..+. +.+..|+.
T Consensus 196 ~gV~i~~~~~v~~i~~~~~~~~v~~~~g~~i~~D~vI~a~G~~p~~~l~~~~gl~ 250 (377)
T PRK04965 196 MGVHLLLKSQLQGLEKTDSGIRATLDSGRSIEVDAVIAAAGLRPNTALARRAGLA 250 (377)
T ss_pred CCCEEEECCeEEEEEccCCEEEEEEcCCcEEECCEEEECcCCCcchHHHHHCCCC
Confidence 369999999999998877777888999999999999999998653 34444443
No 104
>COG0665 DadA Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]
Probab=94.97 E-value=1.7 Score=39.22 Aligned_cols=59 Identities=20% Similarity=0.226 Sum_probs=42.5
Q ss_pred eeHHHHHHHHHhhCC--C-CcEEecceEEEEEeeCCeeEEEecCCCEEeecEEEecCCCchhh
Q 021278 11 VRRKLLLETLAKELP--S-GTIRYSSQVVSIEESGHFKLLHLADGTILKTKVLIGCDGVNSIV 70 (315)
Q Consensus 11 i~R~~L~~~L~~~~~--~-~~i~~~~~v~~~~~~~~~~~v~~~~g~~~~ad~vVgADG~~S~v 70 (315)
++=..+.+.|.+.+. + ..+..++.+..++.....+.|...+|+ ++||.||-|-|.++..
T Consensus 153 ~~p~~~~~~l~~~~~~~G~~~~~~~~~~~~~~~~~~~~~v~t~~g~-i~a~~vv~a~G~~~~~ 214 (387)
T COG0665 153 LDPRLLTRALAAAAEELGVVIIEGGTPVTSLERDGRVVGVETDGGT-IEADKVVLAAGAWAGE 214 (387)
T ss_pred CCHHHHHHHHHHHHHhcCCeEEEccceEEEEEecCcEEEEEeCCcc-EEeCEEEEcCchHHHH
Confidence 344566666766552 3 567778889888875344667767777 9999999999999765
No 105
>PLN02529 lysine-specific histone demethylase 1
Probab=94.86 E-value=1.2 Score=44.11 Aligned_cols=49 Identities=12% Similarity=0.152 Sum_probs=37.8
Q ss_pred HHHHHHHhhCCCCcEEecceEEEEEeeCCeeEEEecCCCEEeecEEEecCCCc
Q 021278 15 LLLETLAKELPSGTIRYSSQVVSIEESGHFKLLHLADGTILKTKVLIGCDGVN 67 (315)
Q Consensus 15 ~L~~~L~~~~~~~~i~~~~~v~~~~~~~~~~~v~~~~g~~~~ad~vVgADG~~ 67 (315)
.|.+.|.+ +..|++|++|.+|+.++++|+|+. ++++++||.||.+==..
T Consensus 358 ~Li~aLA~---~L~IrLnt~V~~I~~~~dGVtV~t-~~~~~~AD~VIVTVPlg 406 (738)
T PLN02529 358 RLINALCE---GVPIFYGKTVDTIKYGNDGVEVIA-GSQVFQADMVLCTVPLG 406 (738)
T ss_pred HHHHHHHh---cCCEEcCCceeEEEEcCCeEEEEE-CCEEEEcCEEEECCCHH
Confidence 44555554 356999999999999999988874 45689999999876554
No 106
>COG3380 Predicted NAD/FAD-dependent oxidoreductase [General function prediction only]
Probab=94.86 E-value=0.28 Score=41.68 Aligned_cols=183 Identities=14% Similarity=0.124 Sum_probs=94.7
Q ss_pred CCcEEecceEEEEEeeCCeeEEEecCCC-EEeecEEEec--------------CCCchhhhhhhCCCCCccccceEEEee
Q 021278 26 SGTIRYSSQVVSIEESGHFKLLHLADGT-ILKTKVLIGC--------------DGVNSIVAKWLGFKNPAFVGRSAIRGY 90 (315)
Q Consensus 26 ~~~i~~~~~v~~~~~~~~~~~v~~~~g~-~~~ad~vVgA--------------DG~~S~vr~~l~~~~~~~~~~~~~~~~ 90 (315)
+.+|+.+++|+.+...++.++++.++|. ...+|.||-| |+..-.+|..+ ..-.|.+.....--
T Consensus 117 dL~V~~~~rVt~v~~~~~~W~l~~~~g~~~~~~d~vvla~PAPQ~~~LLt~~~~~~p~~l~~~~--a~V~y~Pc~s~~lg 194 (331)
T COG3380 117 DLTVVLETRVTEVARTDNDWTLHTDDGTRHTQFDDVVLAIPAPQTATLLTTDADDLPAALRAAL--ADVVYAPCWSAVLG 194 (331)
T ss_pred cchhhhhhhhhhheecCCeeEEEecCCCcccccceEEEecCCCcchhhcCcccccchHHHHHhh--ccceehhHHHHHhc
Confidence 5789999999999998888999997775 5667666654 44444444443 11112222111111
Q ss_pred eecCCCCCCCCceEEEecCCeEEEEEecC--------CCeEEEEEEeeCCCCCcccccChHHHHHHHHHHhcCCCh---H
Q 021278 91 SDFKGSHGFEPNFLQFFGKGLRSGFIPCD--------DQTIYWFFTWTSSSQDKELEDHSAELKQFVLGKLHDLPA---Q 159 (315)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~ 159 (315)
++.+...+.+. .+-++..+.++..+ .+ ..|++...++........+.++....+...+..+.. .
T Consensus 195 ~~q~l~~P~~G----~~vdg~~laWla~d~sK~g~~p~~-~~~vvqasp~wSr~h~~~~~e~~i~~l~aA~~~~~~~~~~ 269 (331)
T COG3380 195 YPQPLDRPWPG----NFVDGHPLAWLARDASKKGHVPDG-EIWVVQASPDWSREHLDHPAEQVIVALRAAAQELDGDRLP 269 (331)
T ss_pred CCccCCCCCCC----cccCCCeeeeeeccccCCCCCCcC-ceEEEEeCchHHHHhhcCCHHHHHHHHHHhhhhccCCCCC
Confidence 12222222222 23333333333322 22 246666555554444556677777777777764433 1
Q ss_pred HHHHHHcCCCcceeeccccccCccccccc----CcCCCcEEEeccCCCCCCCCCccchhhhhhHHHHHHHHHHH
Q 021278 160 VKAVIEKTPLDSIISSRLQYRQPQEVLWG----NISRGSVCVAGDALHPMTPDIGQGGCAALEDGIVLARCINE 229 (315)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~v~LiGDAAh~~~P~~G~G~~~al~da~~La~~l~~ 229 (315)
...+.. ...+++..|...... --...++...||.+|. .=+--|..++..+++.|.+
T Consensus 270 ~p~~s~--------~H~WrYA~P~~~~~~~~L~ad~~~~l~~cGDwc~G------grVEgA~LSGlAaA~~i~~ 329 (331)
T COG3380 270 EPDWSD--------AHRWRYAIPNDAVAGPPLDADRELPLYACGDWCAG------GRVEGAVLSGLAAADHILN 329 (331)
T ss_pred cchHHH--------hhccccccccccccCCccccCCCCceeeecccccC------cchhHHHhccHHHHHHHHh
Confidence 122211 122222333321111 1146789999999775 1233456666666666654
No 107
>PLN02464 glycerol-3-phosphate dehydrogenase
Probab=94.79 E-value=1.5 Score=42.67 Aligned_cols=65 Identities=18% Similarity=0.104 Sum_probs=47.2
Q ss_pred eeHHHHHHHHHhhC--CCCcEEecceEEEEEeeC--Cee-EEEe---cCCC--EEeecEEEecCCCchh-hhhhhC
Q 021278 11 VRRKLLLETLAKEL--PSGTIRYSSQVVSIEESG--HFK-LLHL---ADGT--ILKTKVLIGCDGVNSI-VAKWLG 75 (315)
Q Consensus 11 i~R~~L~~~L~~~~--~~~~i~~~~~v~~~~~~~--~~~-~v~~---~~g~--~~~ad~vVgADG~~S~-vr~~l~ 75 (315)
++-..|...|.+.+ .+++++.+++|+++..++ +++ .|.. .+++ +++||.||-|.|.+|. +++.++
T Consensus 229 vdp~rl~~al~~~A~~~Ga~i~~~~~V~~l~~~~~~g~v~gV~v~d~~tg~~~~i~a~~VVnAaGaws~~l~~~~g 304 (627)
T PLN02464 229 MNDSRLNVALACTAALAGAAVLNYAEVVSLIKDESTGRIVGARVRDNLTGKEFDVYAKVVVNAAGPFCDEVRKMAD 304 (627)
T ss_pred EcHHHHHHHHHHHHHhCCcEEEeccEEEEEEEecCCCcEEEEEEEECCCCcEEEEEeCEEEECCCHhHHHHHHhcc
Confidence 46667777777765 459999999999998763 433 3443 2343 6899999999999975 566664
No 108
>TIGR00275 flavoprotein, HI0933 family. The model when searched with a partial length search brings in proteins with a dinucleotide-binding motif (Rossman fold) over the initial 40 residues of the model, including oxidoreductases and dehydrogenases. Partially characterized members include an FAD-binding protein from Bacillus cereus and flavoprotein HI0933 from Haemophilus influenzae.
Probab=94.75 E-value=0.15 Score=46.63 Aligned_cols=55 Identities=24% Similarity=0.141 Sum_probs=44.0
Q ss_pred HHHHHHHHHhhC--CCCcEEecceEEEEEeeCCeeEEEecCCCEEeecEEEecCCCch
Q 021278 13 RKLLLETLAKEL--PSGTIRYSSQVVSIEESGHFKLLHLADGTILKTKVLIGCDGVNS 68 (315)
Q Consensus 13 R~~L~~~L~~~~--~~~~i~~~~~v~~~~~~~~~~~v~~~~g~~~~ad~vVgADG~~S 68 (315)
...+.+.|.+.+ .+++++++++|++++.+++.+.|.. ++.++.||.||.|+|..|
T Consensus 104 a~~v~~~L~~~l~~~gv~i~~~~~V~~i~~~~~~~~v~~-~~~~i~ad~VIlAtG~~s 160 (400)
T TIGR00275 104 AADVLDALLNELKELGVEILTNSKVKSIKKDDNGFGVET-SGGEYEADKVILATGGLS 160 (400)
T ss_pred HHHHHHHHHHHHHHCCCEEEeCCEEEEEEecCCeEEEEE-CCcEEEcCEEEECCCCcc
Confidence 356666666665 3599999999999987777666766 566899999999999987
No 109
>PLN02487 zeta-carotene desaturase
Probab=94.56 E-value=3.6 Score=39.55 Aligned_cols=50 Identities=14% Similarity=0.101 Sum_probs=36.5
Q ss_pred CCCcEEecceEEEEEeeC--Ce----eEEEe---cCCCEEeecEEEecCCCchhhhhhhC
Q 021278 25 PSGTIRYSSQVVSIEESG--HF----KLLHL---ADGTILKTKVLIGCDGVNSIVAKWLG 75 (315)
Q Consensus 25 ~~~~i~~~~~v~~~~~~~--~~----~~v~~---~~g~~~~ad~vVgADG~~S~vr~~l~ 75 (315)
.+++|+++++|.+++.+. ++ +.|.+ .+++++.+|.||-|=+.. .+.+.+.
T Consensus 308 ~Gg~V~l~~~V~~I~~~~~~~g~~~v~gv~~~~~~~~~~~~aD~VV~A~p~~-~~~~Llp 366 (569)
T PLN02487 308 RGGRFHLRWGCREILYDKSPDGETYVTGLKVSKATEKEIVKADAYVAACDVP-GIKRLLP 366 (569)
T ss_pred cCCEEEeCCceEEEEEecCCCCceeEEEEEEecCCCceEEECCEEEECCCHH-HHHHhCC
Confidence 469999999999999863 22 33555 233478999999999988 4566663
No 110
>TIGR02732 zeta_caro_desat carotene 7,8-desaturase. Carotene 7,8-desaturase, also called zeta-carotene desaturase, catalyzes multiple steps in the pathway from geranylgeranyl-PP to all-trans-lycopene in plants and cyanobacteria. A similar enzyme and pathway is found in the green sulfur bacterium Chlorobium tepidum.
Probab=94.53 E-value=1.2 Score=41.80 Aligned_cols=50 Identities=14% Similarity=0.151 Sum_probs=35.8
Q ss_pred CCCcEEecceEEEEEeeC--Ce---e-EEEecCC---CEEeecEEEecCCCchhhhhhhC
Q 021278 25 PSGTIRYSSQVVSIEESG--HF---K-LLHLADG---TILKTKVLIGCDGVNSIVAKWLG 75 (315)
Q Consensus 25 ~~~~i~~~~~v~~~~~~~--~~---~-~v~~~~g---~~~~ad~vVgADG~~S~vr~~l~ 75 (315)
.+++|+.+++|.+++.++ ++ + .|.+.+| +++.||.||-|-..+ .+++.+.
T Consensus 232 ~Gg~i~~~~~V~~I~~~~~~~~~~~v~~v~~~~g~~~~~~~aD~VVlA~p~~-~~~~Ll~ 290 (474)
T TIGR02732 232 RGGKFHLRHKVREIKYEKSSDGSTRVTGLIMSKPEGKKVIKADAYVAACDVP-GIKRLLP 290 (474)
T ss_pred CCCEEECCCEEEEEEEecCCCCceeEEEEEEecCCcceEEECCEEEECCChH-HHHhhCC
Confidence 469999999999998754 22 2 2345544 468999999999987 3455553
No 111
>TIGR02731 phytoene_desat phytoene desaturase. Plants and cyanobacteria (and, supposedly, Chlorobium tepidum) have a conserved pathway from two molecules geranylgeranyl-PP to one of all-trans-lycopene. Members of this family are the enzyme pytoene desaturase (also called phytoene dehydrogenase). This model does not include the region of the chloroplast transit peptide in plants. A closely related family, excluded by this model, is zeta-carotene desaturase, another enzyme in the same pathway.
Probab=94.30 E-value=1.5 Score=40.79 Aligned_cols=60 Identities=18% Similarity=0.201 Sum_probs=42.6
Q ss_pred HHHHHHHhhC--CCCcEEecceEEEEEeeCCe-e-EEEecCCC-----EEeecEEEecCCCchhhhhhhC
Q 021278 15 LLLETLAKEL--PSGTIRYSSQVVSIEESGHF-K-LLHLADGT-----ILKTKVLIGCDGVNSIVAKWLG 75 (315)
Q Consensus 15 ~L~~~L~~~~--~~~~i~~~~~v~~~~~~~~~-~-~v~~~~g~-----~~~ad~vVgADG~~S~vr~~l~ 75 (315)
.|.+.|.+.+ .+++|+.|++|++|+.++++ + .|.+.+++ ++.||.||-|-..+. +++.+.
T Consensus 214 ~l~~~l~~~l~~~g~~i~l~~~V~~I~~~~~~~v~~v~~~~~~~~~~~~~~a~~VI~a~p~~~-~~~lL~ 282 (453)
T TIGR02731 214 RLCQPIVDYITSRGGEVRLNSRLKEIVLNEDGSVKHFVLADGEGQRRFEVTADAYVSAMPVDI-FKLLLP 282 (453)
T ss_pred HHHHHHHHHHHhcCCEEeCCCeeEEEEECCCCCEEEEEEecCCCCceeEEECCEEEEcCCHHH-HHhhCc
Confidence 3555555554 35899999999999865544 3 46666654 789999999987754 566663
No 112
>PRK05192 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; Validated
Probab=94.12 E-value=0.15 Score=48.79 Aligned_cols=59 Identities=17% Similarity=0.125 Sum_probs=46.0
Q ss_pred eeeHHHHHHHHHhhC---CCCcEEecceEEEEEeeCCee-EEEecCCCEEeecEEEecCCCchh
Q 021278 10 CVRRKLLLETLAKEL---PSGTIRYSSQVVSIEESGHFK-LLHLADGTILKTKVLIGCDGVNSI 69 (315)
Q Consensus 10 ~i~R~~L~~~L~~~~---~~~~i~~~~~v~~~~~~~~~~-~v~~~~g~~~~ad~vVgADG~~S~ 69 (315)
.++|..+.+.|.+.+ +++++. ...|+++..+++.+ .|...+|..+.|+.||.|+|.++.
T Consensus 96 QiDr~ly~kaL~e~L~~~~nV~I~-q~~V~~Li~e~grV~GV~t~dG~~I~Ak~VIlATGTFL~ 158 (618)
T PRK05192 96 QADRKLYRAAMREILENQPNLDLF-QGEVEDLIVENGRVVGVVTQDGLEFRAKAVVLTTGTFLR 158 (618)
T ss_pred hcCHHHHHHHHHHHHHcCCCcEEE-EeEEEEEEecCCEEEEEEECCCCEEECCEEEEeeCcchh
Confidence 477888888887655 457775 56788887776664 477888999999999999998763
No 113
>PF01134 GIDA: Glucose inhibited division protein A; InterPro: IPR002218 GidA is a tRNA modification enzyme found in bacteria and mitochondria. Though its precise molecular function of these proteins is not known, it is involved in the 5-carboxymethylaminomethyl modification of the wobble uridine base in some tRNAs [, ]. Sequence variations in the human mitochondrial protein may influence the severity of aminoglycoside-induced deafness []. This entry is found in GidA and related proteins, such as the methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase enzyme TrmFO.; GO: 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing; PDB: 3CES_C 3CP2_A 3G05_A 2CUL_A 3CP8_A 2ZXI_B 2ZXH_A 3G5S_A 3G5R_A 3G5Q_A.
Probab=94.05 E-value=0.19 Score=45.41 Aligned_cols=58 Identities=19% Similarity=0.199 Sum_probs=46.9
Q ss_pred eeeeHHHHHHHHHhhC---CCCcEEecceEEEEEeeCCe-eEEEecCCCEEeecEEEecCCCc
Q 021278 9 RCVRRKLLLETLAKEL---PSGTIRYSSQVVSIEESGHF-KLLHLADGTILKTKVLIGCDGVN 67 (315)
Q Consensus 9 ~~i~R~~L~~~L~~~~---~~~~i~~~~~v~~~~~~~~~-~~v~~~~g~~~~ad~vVgADG~~ 67 (315)
..++|..+.+.+.+.+ ++++|. ..+|+++..+++. ..|.+.+|+++.||.||.|+|.+
T Consensus 90 ~qvDr~~y~~~~~~~l~~~~nl~i~-~~~V~~l~~e~~~v~GV~~~~g~~~~a~~vVlaTGtf 151 (392)
T PF01134_consen 90 AQVDRDKYSRAMREKLESHPNLTII-QGEVTDLIVENGKVKGVVTKDGEEIEADAVVLATGTF 151 (392)
T ss_dssp EEE-HHHHHHHHHHHHHTSTTEEEE-ES-EEEEEECTTEEEEEEETTSEEEEECEEEE-TTTG
T ss_pred hhccHHHHHHHHHHHHhcCCCeEEE-EcccceEEecCCeEEEEEeCCCCEEecCEEEEecccc
Confidence 4899999999998876 568886 5789999887776 56888999999999999999993
No 114
>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional
Probab=93.76 E-value=0.25 Score=46.16 Aligned_cols=47 Identities=23% Similarity=0.321 Sum_probs=41.0
Q ss_pred CCCcEEecceEEEEEeeCCeeEEEecCCCEEeecEEEecCCCchhhh
Q 021278 25 PSGTIRYSSQVVSIEESGHFKLLHLADGTILKTKVLIGCDGVNSIVA 71 (315)
Q Consensus 25 ~~~~i~~~~~v~~~~~~~~~~~v~~~~g~~~~ad~vVgADG~~S~vr 71 (315)
.+++++.+++|++++.+++++.+++.+|+++++|.||.|.|....+.
T Consensus 229 ~gI~v~~~~~v~~i~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~~ 275 (461)
T PRK05249 229 SGVTIRHNEEVEKVEGGDDGVIVHLKSGKKIKADCLLYANGRTGNTD 275 (461)
T ss_pred cCCEEEECCEEEEEEEeCCeEEEEECCCCEEEeCEEEEeecCCcccc
Confidence 36999999999999877777778888888999999999999987654
No 115
>PF13454 NAD_binding_9: FAD-NAD(P)-binding
Probab=93.73 E-value=0.4 Score=37.58 Aligned_cols=57 Identities=23% Similarity=0.282 Sum_probs=42.4
Q ss_pred eeeHHHHHHHHHhhC-------C-CCcE-EecceEEEEEeeCCeeEEEecCCCEEeecEEEecCCC
Q 021278 10 CVRRKLLLETLAKEL-------P-SGTI-RYSSQVVSIEESGHFKLLHLADGTILKTKVLIGCDGV 66 (315)
Q Consensus 10 ~i~R~~L~~~L~~~~-------~-~~~i-~~~~~v~~~~~~~~~~~v~~~~g~~~~ad~vVgADG~ 66 (315)
.++|..+-+.|.+.+ + +++| +...+|+++...+++..|..++|..+.+|.||-|.|-
T Consensus 90 f~pR~~~G~YL~~~~~~~~~~~~~~i~v~~~~~~V~~i~~~~~~~~v~~~~g~~~~~d~VvLa~Gh 155 (156)
T PF13454_consen 90 FPPRALFGEYLRDRFDRLLARLPAGITVRHVRAEVVDIRRDDDGYRVVTADGQSIRADAVVLATGH 155 (156)
T ss_pred CCCHHHHHHHHHHHHHHHHHhhcCCcEEEEEeeEEEEEEEcCCcEEEEECCCCEEEeCEEEECCCC
Confidence 456666665555532 2 2222 2456899999998888999999999999999999984
No 116
>PF03486 HI0933_like: HI0933-like protein; InterPro: IPR004792 This is a family of conserved hypothetical proteins that may include proteins with a dinucleotide-binding motif (Rossman fold), including oxidoreductases and dehydrogenases.; PDB: 2I0Z_A 3V76_A 2GQF_A.
Probab=93.46 E-value=0.18 Score=46.28 Aligned_cols=55 Identities=22% Similarity=0.248 Sum_probs=38.0
Q ss_pred HHHHHHHHhhC--CCCcEEecceEEEEEeeCCe-eEEEecCCCEEeecEEEecCCCch
Q 021278 14 KLLLETLAKEL--PSGTIRYSSQVVSIEESGHF-KLLHLADGTILKTKVLIGCDGVNS 68 (315)
Q Consensus 14 ~~L~~~L~~~~--~~~~i~~~~~v~~~~~~~~~-~~v~~~~g~~~~ad~vVgADG~~S 68 (315)
.++.+.|.+++ .+++|+++++|.+++.++++ ..|.++++.++.||-||-|.|-.|
T Consensus 109 ~~Vv~~L~~~l~~~gv~i~~~~~V~~i~~~~~~~f~v~~~~~~~~~a~~vILAtGG~S 166 (409)
T PF03486_consen 109 SSVVDALLEELKRLGVEIHFNTRVKSIEKKEDGVFGVKTKNGGEYEADAVILATGGKS 166 (409)
T ss_dssp HHHHHHHHHHHHHHT-EEE-S--EEEEEEETTEEEEEEETTTEEEEESEEEE----SS
T ss_pred HHHHHHHHHHHHHcCCEEEeCCEeeeeeecCCceeEeeccCcccccCCEEEEecCCCC
Confidence 45556666665 36999999999999998887 778887888999999999988765
No 117
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=93.35 E-value=0.22 Score=33.99 Aligned_cols=37 Identities=32% Similarity=0.397 Sum_probs=29.3
Q ss_pred HHHHHHHHhhCCCCcEEecceEEEEEeeCCeeEEEecCC
Q 021278 14 KLLLETLAKELPSGTIRYSSQVVSIEESGHFKLLHLADG 52 (315)
Q Consensus 14 ~~L~~~L~~~~~~~~i~~~~~v~~~~~~~~~~~v~~~~g 52 (315)
..+.+.|.+. ++++++++++.+++.++++++|.++||
T Consensus 44 ~~~~~~l~~~--gV~v~~~~~v~~i~~~~~~~~V~~~~g 80 (80)
T PF00070_consen 44 KILEEYLRKR--GVEVHTNTKVKEIEKDGDGVEVTLEDG 80 (80)
T ss_dssp HHHHHHHHHT--TEEEEESEEEEEEEEETTSEEEEEETS
T ss_pred HHHHHHHHHC--CCEEEeCCEEEEEEEeCCEEEEEEecC
Confidence 3344455543 799999999999999988877988886
No 118
>PTZ00383 malate:quinone oxidoreductase; Provisional
Probab=92.99 E-value=0.3 Score=45.99 Aligned_cols=67 Identities=21% Similarity=0.324 Sum_probs=51.0
Q ss_pred eeeeHHHHHHHHHhhCC------C--CcEEecceEEEEEee-CCeeEEEecCCCEEeecEEEecCCCchh-hhhhhCC
Q 021278 9 RCVRRKLLLETLAKELP------S--GTIRYSSQVVSIEES-GHFKLLHLADGTILKTKVLIGCDGVNSI-VAKWLGF 76 (315)
Q Consensus 9 ~~i~R~~L~~~L~~~~~------~--~~i~~~~~v~~~~~~-~~~~~v~~~~g~~~~ad~vVgADG~~S~-vr~~l~~ 76 (315)
..++-..|.+.|.+.+. + ++|+.+++|++++.+ ++.+.|...+| +++||.||-|-|.+|. +.+.+|+
T Consensus 206 ~~Vd~~~L~~al~~~a~~~~~~~G~~v~i~~~t~V~~I~~~~~~~~~V~T~~G-~i~A~~VVvaAG~~S~~La~~~Gi 282 (497)
T PTZ00383 206 TTVDYQKLSESFVKHARRDALVPGKKISINLNTEVLNIERSNDSLYKIHTNRG-EIRARFVVVSACGYSLLFAQKMGY 282 (497)
T ss_pred EEECHHHHHHHHHHHHHhhhhhcCCCEEEEeCCEEEEEEecCCCeEEEEECCC-EEEeCEEEECcChhHHHHHHHhCC
Confidence 35677777777776552 3 678999999999987 44567777666 6999999999999884 5666665
No 119
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=92.68 E-value=0.29 Score=46.51 Aligned_cols=57 Identities=21% Similarity=0.263 Sum_probs=46.8
Q ss_pred eHHHHHHHHHhhCC--CCcEEecceEEEEEeeCCeeEEEecCCCEEeecEEEecCCCch
Q 021278 12 RRKLLLETLAKELP--SGTIRYSSQVVSIEESGHFKLLHLADGTILKTKVLIGCDGVNS 68 (315)
Q Consensus 12 ~R~~L~~~L~~~~~--~~~i~~~~~v~~~~~~~~~~~v~~~~g~~~~ad~vVgADG~~S 68 (315)
.-..|.+.|.+.+. +++++.+++|.++..+++.+.|.+.+|+++++|.||.|+|.++
T Consensus 264 ~~~~l~~~l~~~~~~~gv~i~~~~~V~~I~~~~~~~~V~~~~g~~i~a~~vViAtG~~~ 322 (517)
T PRK15317 264 EGPKLAAALEEHVKEYDVDIMNLQRASKLEPAAGLIEVELANGAVLKAKTVILATGARW 322 (517)
T ss_pred CHHHHHHHHHHHHHHCCCEEEcCCEEEEEEecCCeEEEEECCCCEEEcCEEEECCCCCc
Confidence 44566666666552 4899999999999888777888888888999999999999976
No 120
>PRK06116 glutathione reductase; Validated
Probab=92.68 E-value=0.39 Score=44.71 Aligned_cols=47 Identities=19% Similarity=0.159 Sum_probs=40.0
Q ss_pred CCCcEEecceEEEEEeeCCe-eEEEecCCCEEeecEEEecCCCchhhh
Q 021278 25 PSGTIRYSSQVVSIEESGHF-KLLHLADGTILKTKVLIGCDGVNSIVA 71 (315)
Q Consensus 25 ~~~~i~~~~~v~~~~~~~~~-~~v~~~~g~~~~ad~vVgADG~~S~vr 71 (315)
.+++++++++|.+++.++++ +.|.+.+|+++++|.||.|-|....+.
T Consensus 221 ~GV~i~~~~~V~~i~~~~~g~~~v~~~~g~~i~~D~Vv~a~G~~p~~~ 268 (450)
T PRK06116 221 KGIRLHTNAVPKAVEKNADGSLTLTLEDGETLTVDCLIWAIGREPNTD 268 (450)
T ss_pred CCcEEECCCEEEEEEEcCCceEEEEEcCCcEEEeCEEEEeeCCCcCCC
Confidence 36999999999999876555 778888899999999999999876554
No 121
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=92.16 E-value=0.6 Score=40.49 Aligned_cols=55 Identities=20% Similarity=0.284 Sum_probs=43.5
Q ss_pred HHHHHHHHHhhC--CCCcEEecceEEEEEeeCCeeEEEecCCCEEeecEEEecCCCch
Q 021278 13 RKLLLETLAKEL--PSGTIRYSSQVVSIEESGHFKLLHLADGTILKTKVLIGCDGVNS 68 (315)
Q Consensus 13 R~~L~~~L~~~~--~~~~i~~~~~v~~~~~~~~~~~v~~~~g~~~~ad~vVgADG~~S 68 (315)
...+...|.+.+ .++++++ ++|++++.+++.+.|..+++.++++|+||.|.|...
T Consensus 56 ~~~~~~~l~~~~~~~gv~~~~-~~v~~v~~~~~~~~v~~~~~~~~~~d~liiAtG~~~ 112 (300)
T TIGR01292 56 GPELMEKMKEQAVKFGAEIIY-EEVIKVDLSDRPFKVKTGDGKEYTAKAVIIATGASA 112 (300)
T ss_pred hHHHHHHHHHHHHHcCCeEEE-EEEEEEEecCCeeEEEeCCCCEEEeCEEEECCCCCc
Confidence 345555665544 3588888 899999988777888888888999999999999864
No 122
>COG2509 Uncharacterized FAD-dependent dehydrogenases [General function prediction only]
Probab=91.90 E-value=3 Score=38.27 Aligned_cols=52 Identities=19% Similarity=0.335 Sum_probs=42.6
Q ss_pred HHHHHhhCC--CCcEEecceEEEEEeeCCe-eEEEecCCCEEeecEEEecCCCch
Q 021278 17 LETLAKELP--SGTIRYSSQVVSIEESGHF-KLLHLADGTILKTKVLIGCDGVNS 68 (315)
Q Consensus 17 ~~~L~~~~~--~~~i~~~~~v~~~~~~~~~-~~v~~~~g~~~~ad~vVgADG~~S 68 (315)
.+.+++.+. +++++++++|.+++..++. ..|..++|.++.+|+||-|=|..+
T Consensus 176 vkni~~~l~~~G~ei~f~t~VeDi~~~~~~~~~v~~~~g~~i~~~~vvlA~Grsg 230 (486)
T COG2509 176 VKNIREYLESLGGEIRFNTEVEDIEIEDNEVLGVKLTKGEEIEADYVVLAPGRSG 230 (486)
T ss_pred HHHHHHHHHhcCcEEEeeeEEEEEEecCCceEEEEccCCcEEecCEEEEccCcch
Confidence 344444442 4999999999999988775 568889999999999999999876
No 123
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=91.83 E-value=0.73 Score=42.11 Aligned_cols=45 Identities=20% Similarity=0.228 Sum_probs=38.3
Q ss_pred CCCcEEecceEEEEEeeCCeeEEEecCCCEEeecEEEecCCCchhh
Q 021278 25 PSGTIRYSSQVVSIEESGHFKLLHLADGTILKTKVLIGCDGVNSIV 70 (315)
Q Consensus 25 ~~~~i~~~~~v~~~~~~~~~~~v~~~~g~~~~ad~vVgADG~~S~v 70 (315)
.++++++++++.+++. ++.+.|.+.+|+++.||+||.|-|.....
T Consensus 199 ~GV~i~~~~~V~~i~~-~~~~~v~l~~g~~i~aD~Vv~a~G~~pn~ 243 (396)
T PRK09754 199 AGVRILLNNAIEHVVD-GEKVELTLQSGETLQADVVIYGIGISAND 243 (396)
T ss_pred CCCEEEeCCeeEEEEc-CCEEEEEECCCCEEECCEEEECCCCChhh
Confidence 4699999999999976 45577888999999999999999987543
No 124
>PRK07845 flavoprotein disulfide reductase; Reviewed
Probab=91.53 E-value=0.7 Score=43.27 Aligned_cols=47 Identities=21% Similarity=0.196 Sum_probs=40.8
Q ss_pred CCCcEEecceEEEEEeeCCeeEEEecCCCEEeecEEEecCCCchhhh
Q 021278 25 PSGTIRYSSQVVSIEESGHFKLLHLADGTILKTKVLIGCDGVNSIVA 71 (315)
Q Consensus 25 ~~~~i~~~~~v~~~~~~~~~~~v~~~~g~~~~ad~vVgADG~~S~vr 71 (315)
.+++++.++++.+++.+++++.|.+.+|+++++|.||-|-|....+.
T Consensus 231 ~gV~i~~~~~v~~v~~~~~~~~v~~~~g~~l~~D~vl~a~G~~pn~~ 277 (466)
T PRK07845 231 RGMTVLKRSRAESVERTGDGVVVTLTDGRTVEGSHALMAVGSVPNTA 277 (466)
T ss_pred CCcEEEcCCEEEEEEEeCCEEEEEECCCcEEEecEEEEeecCCcCCC
Confidence 36999999999999877777888888899999999999999876654
No 125
>PLN02507 glutathione reductase
Probab=91.26 E-value=0.81 Score=43.28 Aligned_cols=47 Identities=6% Similarity=0.017 Sum_probs=40.7
Q ss_pred CCCcEEecceEEEEEeeCCeeEEEecCCCEEeecEEEecCCCchhhh
Q 021278 25 PSGTIRYSSQVVSIEESGHFKLLHLADGTILKTKVLIGCDGVNSIVA 71 (315)
Q Consensus 25 ~~~~i~~~~~v~~~~~~~~~~~v~~~~g~~~~ad~vVgADG~~S~vr 71 (315)
.+++++.+++|.+++.+++++.|.+.+|+++++|+||-|-|....+.
T Consensus 257 ~GI~i~~~~~V~~i~~~~~~~~v~~~~g~~i~~D~vl~a~G~~pn~~ 303 (499)
T PLN02507 257 RGINLHPRTNLTQLTKTEGGIKVITDHGEEFVADVVLFATGRAPNTK 303 (499)
T ss_pred CCCEEEeCCEEEEEEEeCCeEEEEECCCcEEEcCEEEEeecCCCCCC
Confidence 36999999999999877777788888888999999999999886653
No 126
>PRK09897 hypothetical protein; Provisional
Probab=91.18 E-value=0.69 Score=43.98 Aligned_cols=40 Identities=13% Similarity=0.039 Sum_probs=34.9
Q ss_pred CcEEecceEEEEEeeCCeeEEEecCC-CEEeecEEEecCCC
Q 021278 27 GTIRYSSQVVSIEESGHFKLLHLADG-TILKTKVLIGCDGV 66 (315)
Q Consensus 27 ~~i~~~~~v~~~~~~~~~~~v~~~~g-~~~~ad~vVgADG~ 66 (315)
++++.+++|++++.+++++.|+++++ ..+.||.||.|+|-
T Consensus 124 V~v~~~~~V~~I~~~~~g~~V~t~~gg~~i~aD~VVLAtGh 164 (534)
T PRK09897 124 VAVYESCQVTDLQITNAGVMLATNQDLPSETFDLAVIATGH 164 (534)
T ss_pred EEEEECCEEEEEEEeCCEEEEEECCCCeEEEcCEEEECCCC
Confidence 57788999999999888888888664 78999999999995
No 127
>PRK07208 hypothetical protein; Provisional
Probab=90.88 E-value=13 Score=34.76 Aligned_cols=56 Identities=25% Similarity=0.409 Sum_probs=38.7
Q ss_pred HHHHHHHhhC--CCCcEEecceEEEEEeeCCee--EEEec--CCC--EEeecEEEecCCCchhh
Q 021278 15 LLLETLAKEL--PSGTIRYSSQVVSIEESGHFK--LLHLA--DGT--ILKTKVLIGCDGVNSIV 70 (315)
Q Consensus 15 ~L~~~L~~~~--~~~~i~~~~~v~~~~~~~~~~--~v~~~--~g~--~~~ad~vVgADG~~S~v 70 (315)
.|.+.|.+.+ .+++|++|++|+++..+++++ .+... +|. +++||.||-|=......
T Consensus 219 ~l~~~L~~~l~~~g~~i~~~~~V~~I~~~~~~~v~~~~~~~~~g~~~~~~ad~VI~a~p~~~l~ 282 (479)
T PRK07208 219 QLWETAAEKLEALGGKVVLNAKVVGLHHDGDGRIAVVVVNDTDGTEETVTADQVISSMPLRELV 282 (479)
T ss_pred hHHHHHHHHHHHcCCEEEeCCEEEEEEEcCCcEEEEEEEEcCCCCEEEEEcCEEEECCCHHHHH
Confidence 3555665555 358999999999999887653 23332 353 68899999887665544
No 128
>KOG2844 consensus Dimethylglycine dehydrogenase precursor [Amino acid transport and metabolism]
Probab=90.87 E-value=15 Score=35.68 Aligned_cols=69 Identities=17% Similarity=0.214 Sum_probs=50.6
Q ss_pred eeeHHHHHHHHHhhCC--CCcEEecceEEEEEeeCCe-eEEEecCCCEEeecEEEecCCCch-hhhhhhCCCCC
Q 021278 10 CVRRKLLLETLAKELP--SGTIRYSSQVVSIEESGHF-KLLHLADGTILKTKVLIGCDGVNS-IVAKWLGFKNP 79 (315)
Q Consensus 10 ~i~R~~L~~~L~~~~~--~~~i~~~~~v~~~~~~~~~-~~v~~~~g~~~~ad~vVgADG~~S-~vr~~l~~~~~ 79 (315)
+++-..|-+.|..++. ++.|..++.|+++....++ +.|+.+.| .|++..+|-|-|.+- .|-+..+...|
T Consensus 183 ~~DP~~lC~ala~~A~~~GA~viE~cpV~~i~~~~~~~~gVeT~~G-~iet~~~VNaaGvWAr~Vg~m~gvkvP 255 (856)
T KOG2844|consen 183 VMDPAGLCQALARAASALGALVIENCPVTGLHVETDKFGGVETPHG-SIETECVVNAAGVWAREVGAMAGVKVP 255 (856)
T ss_pred ccCHHHHHHHHHHHHHhcCcEEEecCCcceEEeecCCccceeccCc-ceecceEEechhHHHHHhhhhcCCccc
Confidence 6778889999998774 4999999999999876554 45555444 478999999999874 33333354433
No 129
>PRK06416 dihydrolipoamide dehydrogenase; Reviewed
Probab=90.75 E-value=0.84 Score=42.66 Aligned_cols=47 Identities=15% Similarity=0.188 Sum_probs=39.5
Q ss_pred CCCcEEecceEEEEEeeCCeeEEEecCC---CEEeecEEEecCCCchhhh
Q 021278 25 PSGTIRYSSQVVSIEESGHFKLLHLADG---TILKTKVLIGCDGVNSIVA 71 (315)
Q Consensus 25 ~~~~i~~~~~v~~~~~~~~~~~v~~~~g---~~~~ad~vVgADG~~S~vr 71 (315)
.+++++.+++|.+++.+++++.+.+.++ +++.+|.||-|-|....+.
T Consensus 226 ~gV~i~~~~~V~~i~~~~~~v~v~~~~gg~~~~i~~D~vi~a~G~~p~~~ 275 (462)
T PRK06416 226 RGIKIKTGAKAKKVEQTDDGVTVTLEDGGKEETLEADYVLVAVGRRPNTE 275 (462)
T ss_pred cCCEEEeCCEEEEEEEeCCEEEEEEEeCCeeEEEEeCEEEEeeCCccCCC
Confidence 3699999999999988777777877766 6799999999999886543
No 130
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=90.62 E-value=0.71 Score=43.84 Aligned_cols=57 Identities=19% Similarity=0.246 Sum_probs=45.3
Q ss_pred eHHHHHHHHHhhC--CCCcEEecceEEEEEeeCCeeEEEecCCCEEeecEEEecCCCch
Q 021278 12 RRKLLLETLAKEL--PSGTIRYSSQVVSIEESGHFKLLHLADGTILKTKVLIGCDGVNS 68 (315)
Q Consensus 12 ~R~~L~~~L~~~~--~~~~i~~~~~v~~~~~~~~~~~v~~~~g~~~~ad~vVgADG~~S 68 (315)
....|.+.|.+.+ .+++++.+++|.+++.+++.+.|.+++|.++++|.||.|.|.+.
T Consensus 265 ~~~~l~~~l~~~l~~~gv~i~~~~~V~~I~~~~~~~~v~~~~g~~i~~d~lIlAtGa~~ 323 (515)
T TIGR03140 265 TGSQLAANLEEHIKQYPIDLMENQRAKKIETEDGLIVVTLESGEVLKAKSVIVATGARW 323 (515)
T ss_pred CHHHHHHHHHHHHHHhCCeEEcCCEEEEEEecCCeEEEEECCCCEEEeCEEEECCCCCc
Confidence 3445555555544 35899999999999887777788888888999999999999874
No 131
>PLN02172 flavin-containing monooxygenase FMO GS-OX
Probab=90.55 E-value=0.69 Score=43.23 Aligned_cols=59 Identities=14% Similarity=0.126 Sum_probs=46.0
Q ss_pred eeHHHHHHHHHhhCCC--Cc--EEecceEEEEEeeCCeeEEEecCC--C--EEeecEEEecCCCchh
Q 021278 11 VRRKLLLETLAKELPS--GT--IRYSSQVVSIEESGHFKLLHLADG--T--ILKTKVLIGCDGVNSI 69 (315)
Q Consensus 11 i~R~~L~~~L~~~~~~--~~--i~~~~~v~~~~~~~~~~~v~~~~g--~--~~~ad~vVgADG~~S~ 69 (315)
..+.++.+.|.+.+.. +. |+++++|++++..++++.|+.+++ . +..+|.||.|.|..+.
T Consensus 108 p~~~ev~~YL~~~a~~fgl~~~I~~~t~V~~V~~~~~~w~V~~~~~~~~~~~~~~d~VIvAtG~~~~ 174 (461)
T PLN02172 108 PSHREVLAYLQDFAREFKIEEMVRFETEVVRVEPVDGKWRVQSKNSGGFSKDEIFDAVVVCNGHYTE 174 (461)
T ss_pred CCHHHHHHHHHHHHHHcCCcceEEecCEEEEEeecCCeEEEEEEcCCCceEEEEcCEEEEeccCCCC
Confidence 3667888888877633 44 899999999998877888887643 2 4679999999998753
No 132
>PF12831 FAD_oxidored: FAD dependent oxidoreductase; PDB: 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A.
Probab=90.39 E-value=0.081 Score=48.94 Aligned_cols=66 Identities=18% Similarity=0.229 Sum_probs=0.0
Q ss_pred eeeeHHHHHHHHHhhC--CCCcEEecceEEEEEeeCCe-eEEEecC--C-CEEeecEEEecCCCchhhhhhhC
Q 021278 9 RCVRRKLLLETLAKEL--PSGTIRYSSQVVSIEESGHF-KLLHLAD--G-TILKTKVLIGCDGVNSIVAKWLG 75 (315)
Q Consensus 9 ~~i~R~~L~~~L~~~~--~~~~i~~~~~v~~~~~~~~~-~~v~~~~--g-~~~~ad~vVgADG~~S~vr~~l~ 75 (315)
+.+++..+...|.+.+ .+++|++++.|+++..++++ +.|.+++ | .+++|+++|.|+|-. .+....|
T Consensus 85 ~~~~~~~~~~~l~~~l~e~gv~v~~~t~v~~v~~~~~~i~~V~~~~~~g~~~i~A~~~IDaTG~g-~l~~~aG 156 (428)
T PF12831_consen 85 VPFDPEVFKAVLDEMLAEAGVEVLLGTRVVDVIRDGGRITGVIVETKSGRKEIRAKVFIDATGDG-DLAALAG 156 (428)
T ss_dssp -------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccc
Confidence 3566666666666655 45999999999999998765 3344443 4 589999999999954 4444443
No 133
>TIGR03378 glycerol3P_GlpB glycerol-3-phosphate dehydrogenase, anaerobic, B subunit. Members of this protein family are the B subunit, product of the glpB gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.
Probab=90.30 E-value=1.2 Score=40.92 Aligned_cols=59 Identities=17% Similarity=0.095 Sum_probs=44.6
Q ss_pred eeHHHHHHHHHhhC--CCCcEEecceEEEEEeeCCeeEEEe-cCC--CEEeecEEEecCCCc-hh
Q 021278 11 VRRKLLLETLAKEL--PSGTIRYSSQVVSIEESGHFKLLHL-ADG--TILKTKVLIGCDGVN-SI 69 (315)
Q Consensus 11 i~R~~L~~~L~~~~--~~~~i~~~~~v~~~~~~~~~~~v~~-~~g--~~~~ad~vVgADG~~-S~ 69 (315)
+.=..|.+.|.+++ -++++..+++|.+++.++++++... +++ .+++||-+|-|.|.+ |.
T Consensus 260 v~G~RL~~aL~~~~~~~Gg~il~g~~V~~i~~~~~~v~~V~t~~g~~~~l~AD~vVLAaGaw~S~ 324 (419)
T TIGR03378 260 LLGIRLEEALKHRFEQLGGVMLPGDRVLRAEFEGNRVTRIHTRNHRDIPLRADHFVLASGSFFSN 324 (419)
T ss_pred CcHHHHHHHHHHHHHHCCCEEEECcEEEEEEeeCCeEEEEEecCCccceEECCEEEEccCCCcCH
Confidence 33445666666655 3589999999999998888766433 554 489999999999999 75
No 134
>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.
Probab=90.21 E-value=1.1 Score=41.78 Aligned_cols=56 Identities=16% Similarity=0.189 Sum_probs=43.3
Q ss_pred HHHHHHhhC--CCCcEEecceEEEEEeeCCeeEEEecCC--CEEeecEEEecCCCchhhh
Q 021278 16 LLETLAKEL--PSGTIRYSSQVVSIEESGHFKLLHLADG--TILKTKVLIGCDGVNSIVA 71 (315)
Q Consensus 16 L~~~L~~~~--~~~~i~~~~~v~~~~~~~~~~~v~~~~g--~~~~ad~vVgADG~~S~vr 71 (315)
+.+.+.+.+ .+++++.+++|.+++.+++++.+.+.+| .++.+|.||.|.|....+.
T Consensus 213 ~~~~~~~~l~~~gi~i~~~~~v~~i~~~~~~v~v~~~~g~~~~i~~D~vi~a~G~~p~~~ 272 (461)
T TIGR01350 213 VSKVVAKALKKKGVKILTNTKVTAVEKNDDQVVYENKGGETETLTGEKVLVAVGRKPNTE 272 (461)
T ss_pred HHHHHHHHHHHcCCEEEeCCEEEEEEEeCCEEEEEEeCCcEEEEEeCEEEEecCCcccCC
Confidence 334444433 3599999999999988777777777777 4899999999999987654
No 135
>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.
Probab=90.11 E-value=1.1 Score=41.67 Aligned_cols=46 Identities=15% Similarity=0.142 Sum_probs=39.7
Q ss_pred CCCcEEecceEEEEEeeCCeeEEEecCCCEEeecEEEecCCCchhh
Q 021278 25 PSGTIRYSSQVVSIEESGHFKLLHLADGTILKTKVLIGCDGVNSIV 70 (315)
Q Consensus 25 ~~~~i~~~~~v~~~~~~~~~~~v~~~~g~~~~ad~vVgADG~~S~v 70 (315)
.+++++.++++.+++..++++.|++.+++++.+|.||-|-|....+
T Consensus 220 ~gV~i~~~~~v~~i~~~~~~~~v~~~~g~~i~~D~viva~G~~pn~ 265 (446)
T TIGR01424 220 RGIRIHPQTSLTSITKTDDGLKVTLSHGEEIVADVVLFATGRSPNT 265 (446)
T ss_pred CCCEEEeCCEEEEEEEcCCeEEEEEcCCcEeecCEEEEeeCCCcCC
Confidence 3699999999999987777777888888899999999999987654
No 136
>TIGR03377 glycerol3P_GlpA glycerol-3-phosphate dehydrogenase, anaerobic, A subunit. Members of this protein family are the A subunit, product of the glpA gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.
Probab=90.02 E-value=6.7 Score=37.25 Aligned_cols=68 Identities=16% Similarity=0.196 Sum_probs=48.7
Q ss_pred eeeHHHHHHHHHhhC--CCCcEEecceEEEEEeeCCee-EEEec---CCC--EEeecEEEecCCCchhh-hhhhCCC
Q 021278 10 CVRRKLLLETLAKEL--PSGTIRYSSQVVSIEESGHFK-LLHLA---DGT--ILKTKVLIGCDGVNSIV-AKWLGFK 77 (315)
Q Consensus 10 ~i~R~~L~~~L~~~~--~~~~i~~~~~v~~~~~~~~~~-~v~~~---~g~--~~~ad~vVgADG~~S~v-r~~l~~~ 77 (315)
.++=..|...|.+.+ -+++|..+++|++++.+++++ .|.+. +|+ +++|+.||-|-|.+|.- .+.+|..
T Consensus 124 ~vdp~~l~~al~~~A~~~Ga~i~~~t~V~~i~~~~~~v~gv~v~~~~~g~~~~i~a~~VVnAaG~wa~~l~~~~g~~ 200 (516)
T TIGR03377 124 TVDPFRLVAANVLDAQEHGARIFTYTKVTGLIREGGRVTGVKVEDHKTGEEERIEAQVVINAAGIWAGRIAEYAGLD 200 (516)
T ss_pred EECHHHHHHHHHHHHHHcCCEEEcCcEEEEEEEECCEEEEEEEEEcCCCcEEEEEcCEEEECCCcchHHHHHhcCCC
Confidence 456666776776655 359999999999999877763 24443 343 79999999999998753 4445553
No 137
>PRK07846 mycothione reductase; Reviewed
Probab=89.86 E-value=0.95 Score=42.19 Aligned_cols=46 Identities=24% Similarity=0.317 Sum_probs=40.1
Q ss_pred CCCcEEecceEEEEEeeCCeeEEEecCCCEEeecEEEecCCCchhh
Q 021278 25 PSGTIRYSSQVVSIEESGHFKLLHLADGTILKTKVLIGCDGVNSIV 70 (315)
Q Consensus 25 ~~~~i~~~~~v~~~~~~~~~~~v~~~~g~~~~ad~vVgADG~~S~v 70 (315)
.+++++.++++++++.+++++.|.+.+|+++.+|.||.|-|....+
T Consensus 219 ~~v~i~~~~~v~~i~~~~~~v~v~~~~g~~i~~D~vl~a~G~~pn~ 264 (451)
T PRK07846 219 KRWDVRLGRNVVGVSQDGSGVTLRLDDGSTVEADVLLVATGRVPNG 264 (451)
T ss_pred cCeEEEeCCEEEEEEEcCCEEEEEECCCcEeecCEEEEEECCccCc
Confidence 3589999999999987776778888888999999999999998765
No 138
>PRK09231 fumarate reductase flavoprotein subunit; Validated
Probab=89.54 E-value=1.2 Score=43.08 Aligned_cols=57 Identities=18% Similarity=0.168 Sum_probs=42.8
Q ss_pred HHHHHHHhhC---CCCcEEecceEEEEEeeCCeeE----EEecCCC--EEeecEEEecCCCchhhh
Q 021278 15 LLLETLAKEL---PSGTIRYSSQVVSIEESGHFKL----LHLADGT--ILKTKVLIGCDGVNSIVA 71 (315)
Q Consensus 15 ~L~~~L~~~~---~~~~i~~~~~v~~~~~~~~~~~----v~~~~g~--~~~ad~vVgADG~~S~vr 71 (315)
.|...|.+++ ++++++.++.++++..+++.+. +...+|. .++|+.||.|+|..|.+-
T Consensus 134 ~i~~~L~~~~~~~~~i~i~~~~~v~~Li~~~g~v~Gv~~~~~~~g~~~~i~AkaVIlATGG~~~l~ 199 (582)
T PRK09231 134 HMLHTLFQTSLKYPQIQRFDEHFVLDILVDDGHVRGLVAMNMMEGTLVQIRANAVVMATGGAGRVY 199 (582)
T ss_pred HHHHHHHHHhhcCCCcEEEeCeEEEEEEEeCCEEEEEEEEEcCCCcEEEEECCEEEECCCCCcCCC
Confidence 4666676654 4689999999999987666532 2345664 789999999999999763
No 139
>PF06039 Mqo: Malate:quinone oxidoreductase (Mqo); InterPro: IPR006231 The membrane-associated enzyme, malate:quinone-oxidoreductase, is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in Escherichia coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase []. ; GO: 0008924 malate dehydrogenase (quinone) activity, 0006099 tricarboxylic acid cycle, 0055114 oxidation-reduction process
Probab=89.27 E-value=1.4 Score=40.64 Aligned_cols=70 Identities=17% Similarity=0.171 Sum_probs=52.1
Q ss_pred eeeHHHHHHHHHhhC---CCCcEEecceEEEEEeeCCe-eEEEecC---C--CEEeecEEEecCCCchhh-hhhhCCCCC
Q 021278 10 CVRRKLLLETLAKEL---PSGTIRYSSQVVSIEESGHF-KLLHLAD---G--TILKTKVLIGCDGVNSIV-AKWLGFKNP 79 (315)
Q Consensus 10 ~i~R~~L~~~L~~~~---~~~~i~~~~~v~~~~~~~~~-~~v~~~~---g--~~~~ad~vVgADG~~S~v-r~~l~~~~~ 79 (315)
.|+=..|-+.|.+.+ ++++++++++|++++..+++ +.|...+ | .+++|++|+..-|.+|.- -+..|+++-
T Consensus 177 DVnFG~LTr~l~~~l~~~~~~~~~~~~eV~~i~r~~dg~W~v~~~~~~~~~~~~v~a~FVfvGAGG~aL~LLqksgi~e~ 256 (488)
T PF06039_consen 177 DVNFGALTRQLVEYLQKQKGFELHLNHEVTDIKRNGDGRWEVKVKDLKTGEKREVRAKFVFVGAGGGALPLLQKSGIPEG 256 (488)
T ss_pred cccHHHHHHHHHHHHHhCCCcEEEecCEeCeeEECCCCCEEEEEEecCCCCeEEEECCEEEECCchHhHHHHHHcCChhh
Confidence 455556666666654 56999999999999998776 8887643 3 489999998888888764 566677643
No 140
>TIGR00551 nadB L-aspartate oxidase. L-aspartate oxidase is the B protein, NadB, of the quinolinate synthetase complex. Quinolinate synthetase makes a precursor of the pyridine nucleotide portion of NAD. This model identifies proteins that cluster as L-aspartate oxidase (a flavoprotein difficult to separate from the set of closely related flavoprotein subunits of succinate dehydrogenase and fumarate reductase) by both UPGMA and neighbor-joining trees. The most distant protein accepted as an L-aspartate oxidase (NadB), that from Pyrococcus horikoshii, not only clusters with other NadB but is just one gene away from NadA.
Probab=87.85 E-value=1.2 Score=41.96 Aligned_cols=59 Identities=10% Similarity=0.093 Sum_probs=44.0
Q ss_pred HHHHHHHHhhC---CCCcEEecceEEEEEeeCCeeE-EEecC-C--CEEeecEEEecCCCchhhhh
Q 021278 14 KLLLETLAKEL---PSGTIRYSSQVVSIEESGHFKL-LHLAD-G--TILKTKVLIGCDGVNSIVAK 72 (315)
Q Consensus 14 ~~L~~~L~~~~---~~~~i~~~~~v~~~~~~~~~~~-v~~~~-g--~~~~ad~vVgADG~~S~vr~ 72 (315)
..+.+.|.+++ +++++++++.++++..+++.+. |...+ + ..++|+.||.|+|..|.+..
T Consensus 128 ~~l~~~L~~~~~~~~gi~i~~~~~v~~l~~~~g~v~Gv~~~~~~~~~~i~A~~VVlAtGG~~~~~~ 193 (488)
T TIGR00551 128 REVITTLVKKALNHPNIRIIEGENALDLLIETGRVVGVWVWNRETVETCHADAVVLATGGAGKLYQ 193 (488)
T ss_pred HHHHHHHHHHHHhcCCcEEEECeEeeeeeccCCEEEEEEEEECCcEEEEEcCEEEECCCcccCCCC
Confidence 46777777765 4699999999999987665543 44433 3 37899999999999997644
No 141
>TIGR03452 mycothione_red mycothione reductase. Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.
Probab=87.69 E-value=1.8 Score=40.36 Aligned_cols=46 Identities=26% Similarity=0.320 Sum_probs=39.6
Q ss_pred CCCcEEecceEEEEEeeCCeeEEEecCCCEEeecEEEecCCCchhh
Q 021278 25 PSGTIRYSSQVVSIEESGHFKLLHLADGTILKTKVLIGCDGVNSIV 70 (315)
Q Consensus 25 ~~~~i~~~~~v~~~~~~~~~~~v~~~~g~~~~ad~vVgADG~~S~v 70 (315)
.+++++.+++|.+++.+++++.|.+.+|+++++|.||.|-|....+
T Consensus 222 ~gI~i~~~~~V~~i~~~~~~v~v~~~~g~~i~~D~vl~a~G~~pn~ 267 (452)
T TIGR03452 222 KKWDIRLGRNVTAVEQDGDGVTLTLDDGSTVTADVLLVATGRVPNG 267 (452)
T ss_pred cCCEEEeCCEEEEEEEcCCeEEEEEcCCCEEEcCEEEEeeccCcCC
Confidence 3589999999999987777788888888899999999999987644
No 142
>PTZ00363 rab-GDP dissociation inhibitor; Provisional
Probab=87.39 E-value=1.7 Score=40.32 Aligned_cols=53 Identities=15% Similarity=0.043 Sum_probs=42.1
Q ss_pred HHHHHHHhhC--CCCcEEecceEEEEEeeCCe--eEEEecCCCEEeecEEEecCCCc
Q 021278 15 LLLETLAKEL--PSGTIRYSSQVVSIEESGHF--KLLHLADGTILKTKVLIGCDGVN 67 (315)
Q Consensus 15 ~L~~~L~~~~--~~~~i~~~~~v~~~~~~~~~--~~v~~~~g~~~~ad~vVgADG~~ 67 (315)
.|-+.|.+.+ .+++++.+++|.++..++++ +.|.+.+|++++|+.||+.....
T Consensus 233 ~L~qal~r~~a~~Gg~~~L~~~V~~I~~~~~g~~~~V~~~~Ge~i~a~~VV~~~s~~ 289 (443)
T PTZ00363 233 GLPQAFSRLCAIYGGTYMLNTPVDEVVFDENGKVCGVKSEGGEVAKCKLVICDPSYF 289 (443)
T ss_pred HHHHHHHHHHHHcCcEEEcCCeEEEEEEcCCCeEEEEEECCCcEEECCEEEECcccc
Confidence 5667776554 46899999999999887543 67889999999999999865554
No 143
>TIGR00136 gidA glucose-inhibited division protein A. GidA, the longer of two forms of GidA-related proteins, appears to be present in all complete eubacterial genomes so far, as well as Saccharomyces cerevisiae. A subset of these organisms have a closely related protein. GidA is absent in the Archaea. It appears to act with MnmE, in an alpha2/beta2 heterotetramer, in the 5-carboxymethylaminomethyl modification of uridine 34 in certain tRNAs. The shorter, related protein, previously called gid or gidA(S), is now called TrmFO (see model TIGR00137).
Probab=87.33 E-value=1.9 Score=41.46 Aligned_cols=59 Identities=17% Similarity=0.157 Sum_probs=44.7
Q ss_pred eeeHHHHHHHHHhhC---CCCcEEecceEEEEEee-CCe-eEEEecCCCEEeecEEEecCCCchh
Q 021278 10 CVRRKLLLETLAKEL---PSGTIRYSSQVVSIEES-GHF-KLLHLADGTILKTKVLIGCDGVNSI 69 (315)
Q Consensus 10 ~i~R~~L~~~L~~~~---~~~~i~~~~~v~~~~~~-~~~-~~v~~~~g~~~~ad~vVgADG~~S~ 69 (315)
.++|..+.+.|.+.+ +++++..+ .|+++..+ ++. ..|...+|..++|+.||.|.|.++.
T Consensus 92 QVDr~~y~~~L~e~Le~~pgV~Ile~-~Vv~li~e~~g~V~GV~t~~G~~I~Ad~VILATGtfL~ 155 (617)
T TIGR00136 92 QIDKVLYRKAMRNALENQPNLSLFQG-EVEDLILEDNDEIKGVVTQDGLKFRAKAVIITTGTFLR 155 (617)
T ss_pred hCCHHHHHHHHHHHHHcCCCcEEEEe-EEEEEEEecCCcEEEEEECCCCEEECCEEEEccCcccC
Confidence 578888888887655 55777654 67777654 333 5677888899999999999999964
No 144
>PRK07818 dihydrolipoamide dehydrogenase; Reviewed
Probab=87.30 E-value=2.3 Score=39.81 Aligned_cols=56 Identities=21% Similarity=0.293 Sum_probs=41.2
Q ss_pred HHHHHHhhC--CCCcEEecceEEEEEeeCCeeEEEec--CCC--EEeecEEEecCCCchhhh
Q 021278 16 LLETLAKEL--PSGTIRYSSQVVSIEESGHFKLLHLA--DGT--ILKTKVLIGCDGVNSIVA 71 (315)
Q Consensus 16 L~~~L~~~~--~~~~i~~~~~v~~~~~~~~~~~v~~~--~g~--~~~ad~vVgADG~~S~vr 71 (315)
+.+.|.+.+ .+++++.+++|++++.+++.+.+.+. +|+ ++++|.||-|-|....+.
T Consensus 215 ~~~~l~~~l~~~gV~i~~~~~v~~i~~~~~~~~v~~~~~~g~~~~i~~D~vi~a~G~~pn~~ 276 (466)
T PRK07818 215 VSKEIAKQYKKLGVKILTGTKVESIDDNGSKVTVTVSKKDGKAQELEADKVLQAIGFAPRVE 276 (466)
T ss_pred HHHHHHHHHHHCCCEEEECCEEEEEEEeCCeEEEEEEecCCCeEEEEeCEEEECcCcccCCC
Confidence 334444433 36999999999999876666666654 563 799999999999876653
No 145
>COG1232 HemY Protoporphyrinogen oxidase [Coenzyme metabolism]
Probab=87.27 E-value=25 Score=32.69 Aligned_cols=61 Identities=26% Similarity=0.332 Sum_probs=44.2
Q ss_pred HHHHHHHHhhCCCCcEEecceEEEEEeeCCeeEEEecCCCEEeecEEEecCCCchhhhhhhCC
Q 021278 14 KLLLETLAKELPSGTIRYSSQVVSIEESGHFKLLHLADGTILKTKVLIGCDGVNSIVAKWLGF 76 (315)
Q Consensus 14 ~~L~~~L~~~~~~~~i~~~~~v~~~~~~~~~~~v~~~~g~~~~ad~vVgADG~~S~vr~~l~~ 76 (315)
..|.+.|.+.++ ++|+++++|+.+..+..+..+.+.+|.++.||-||-+= ....+-+.++.
T Consensus 215 ~~l~~al~~~l~-~~i~~~~~V~~i~~~~~~~~~~~~~g~~~~~D~VI~t~-p~~~l~~ll~~ 275 (444)
T COG1232 215 QSLIEALAEKLE-AKIRTGTEVTKIDKKGAGKTIVDVGGEKITADGVISTA-PLPELARLLGD 275 (444)
T ss_pred HHHHHHHHHHhh-hceeecceeeEEEEcCCccEEEEcCCceEEcceEEEcC-CHHHHHHHcCC
Confidence 356667776654 34999999999999977778888899998888888653 33344455543
No 146
>KOG1346 consensus Programmed cell death 8 (apoptosis-inducing factor) [Signal transduction mechanisms]
Probab=87.06 E-value=0.5 Score=42.64 Aligned_cols=65 Identities=23% Similarity=0.292 Sum_probs=50.3
Q ss_pred eeHHHHHHHHHhhC--CCCcEEecceEEEEEeeCCeeEEEecCCCEEeecEEEecCCC--chhhhhhhC
Q 021278 11 VRRKLLLETLAKEL--PSGTIRYSSQVVSIEESGHFKLLHLADGTILKTKVLIGCDGV--NSIVAKWLG 75 (315)
Q Consensus 11 i~R~~L~~~L~~~~--~~~~i~~~~~v~~~~~~~~~~~v~~~~g~~~~ad~vVgADG~--~S~vr~~l~ 75 (315)
|--.-|-++-.+.+ .++.|+.+..|.++......+.+.+.||.+++.|+||.|-|. +|-+.+.-|
T Consensus 390 iLPeyls~wt~ekir~~GV~V~pna~v~sv~~~~~nl~lkL~dG~~l~tD~vVvavG~ePN~ela~~sg 458 (659)
T KOG1346|consen 390 ILPEYLSQWTIEKIRKGGVDVRPNAKVESVRKCCKNLVLKLSDGSELRTDLVVVAVGEEPNSELAEASG 458 (659)
T ss_pred hhHHHHHHHHHHHHHhcCceeccchhhhhhhhhccceEEEecCCCeeeeeeEEEEecCCCchhhccccc
Confidence 33444445544444 569999999999999988889999999999999999999994 565554443
No 147
>TIGR03862 flavo_PP4765 uncharacterized flavoprotein, PP_4765 family. This model describes a sharply distinctive clade of proteins within the larger family of flavoproteins described by Pfam model pfam03486 and TIGRFAMs model TIGR00275. The function is unknown.
Probab=86.92 E-value=2.3 Score=38.59 Aligned_cols=62 Identities=18% Similarity=0.171 Sum_probs=44.5
Q ss_pred HHHHHHHHhhC--CCCcEEecceEEEEEeeCCeeEEEecCC-CEEeecEEEecCCCch-----------hhhhhhCCC
Q 021278 14 KLLLETLAKEL--PSGTIRYSSQVVSIEESGHFKLLHLADG-TILKTKVLIGCDGVNS-----------IVAKWLGFK 77 (315)
Q Consensus 14 ~~L~~~L~~~~--~~~~i~~~~~v~~~~~~~~~~~v~~~~g-~~~~ad~vVgADG~~S-----------~vr~~l~~~ 77 (315)
.+..+.|.+++ .+++|+++++|.++ ++++..+.+.++ .+++||-||-|-|-.| .+.+.+|..
T Consensus 86 ~sVv~~L~~~l~~~gV~i~~~~~V~~i--~~~~~~v~~~~~~~~~~a~~vIlAtGG~s~p~~Gs~g~gy~la~~lGh~ 161 (376)
T TIGR03862 86 APLLRAWLKRLAEQGVQFHTRHRWIGW--QGGTLRFETPDGQSTIEADAVVLALGGASWSQLGSDGAWQQVLDQRGVS 161 (376)
T ss_pred HHHHHHHHHHHHHCCCEEEeCCEEEEE--eCCcEEEEECCCceEEecCEEEEcCCCccccccCCCcHHHHHHHHCCCc
Confidence 45556666665 46999999999999 333456666543 4799999999999876 556667654
No 148
>KOG0685 consensus Flavin-containing amine oxidase [Coenzyme transport and metabolism]
Probab=86.83 E-value=1.3 Score=40.81 Aligned_cols=49 Identities=20% Similarity=0.280 Sum_probs=37.2
Q ss_pred HHHHHHHhhCCCCcEEec--------ceEEEEEeeC-CeeEEEecCCCEEeecEEEec
Q 021278 15 LLLETLAKELPSGTIRYS--------SQVVSIEESG-HFKLLHLADGTILKTKVLIGC 63 (315)
Q Consensus 15 ~L~~~L~~~~~~~~i~~~--------~~v~~~~~~~-~~~~v~~~~g~~~~ad~vVgA 63 (315)
.+.+.|....|+..+..| ++|.+++.++ +.+.|.+.||+.+.||.||.-
T Consensus 224 ~iL~~l~~~~p~~~i~~~~~~~~~~~~rv~~I~~~~~~~v~l~c~dg~v~~adhVIvT 281 (498)
T KOG0685|consen 224 RILKLLMAVIPAQNIELGLWKRIHLNTRVENINWKNTGEVKLRCSDGEVFHADHVIVT 281 (498)
T ss_pred HHHHHHhccCCCcchhcCchhhhcccccceeeccCCCCcEEEEEeCCcEEeccEEEEE
Confidence 344445545566555555 9999999886 459999999999999999864
No 149
>PRK07804 L-aspartate oxidase; Provisional
Probab=86.27 E-value=1.8 Score=41.44 Aligned_cols=57 Identities=16% Similarity=0.162 Sum_probs=41.0
Q ss_pred HHHHHHHhhC--CCCcEEecceEEEEEeeCC-e---eEEE-----ecCC-CEEeecEEEecCCCchhhh
Q 021278 15 LLLETLAKEL--PSGTIRYSSQVVSIEESGH-F---KLLH-----LADG-TILKTKVLIGCDGVNSIVA 71 (315)
Q Consensus 15 ~L~~~L~~~~--~~~~i~~~~~v~~~~~~~~-~---~~v~-----~~~g-~~~~ad~vVgADG~~S~vr 71 (315)
.+.+.|.+++ .++++++++.++++..+++ . +.+. ..++ ..+.|+.||.|+|..|.++
T Consensus 145 ~i~~~L~~~~~~~gV~i~~~~~v~~Li~~~~g~v~Gv~~~~~~~~~~~g~~~i~Ak~VIlATGG~~~~~ 213 (541)
T PRK07804 145 EVQRALDAAVRADPLDIREHALALDLLTDGTGAVAGVTLHVLGEGSPDGVGAVHAPAVVLATGGLGQLY 213 (541)
T ss_pred HHHHHHHHHHHhCCCEEEECeEeeeeEEcCCCeEEEEEEEeccCCCCCcEEEEEcCeEEECCCCCCCCC
Confidence 4666676665 2499999999999987654 3 3333 1233 3689999999999998654
No 150
>PRK06327 dihydrolipoamide dehydrogenase; Validated
Probab=86.26 E-value=2.4 Score=39.76 Aligned_cols=47 Identities=17% Similarity=0.115 Sum_probs=38.6
Q ss_pred CCCcEEecceEEEEEeeCCeeEEEecCC----CEEeecEEEecCCCchhhh
Q 021278 25 PSGTIRYSSQVVSIEESGHFKLLHLADG----TILKTKVLIGCDGVNSIVA 71 (315)
Q Consensus 25 ~~~~i~~~~~v~~~~~~~~~~~v~~~~g----~~~~ad~vVgADG~~S~vr 71 (315)
.+++++.+++|++++.+++++.|.+.++ +++++|.||-|-|....+.
T Consensus 237 ~gi~i~~~~~v~~i~~~~~~v~v~~~~~~g~~~~i~~D~vl~a~G~~p~~~ 287 (475)
T PRK06327 237 QGLDIHLGVKIGEIKTGGKGVSVAYTDADGEAQTLEVDKLIVSIGRVPNTD 287 (475)
T ss_pred cCcEEEeCcEEEEEEEcCCEEEEEEEeCCCceeEEEcCEEEEccCCccCCC
Confidence 4699999999999988777777776553 4799999999999887654
No 151
>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit.
Probab=86.23 E-value=2.5 Score=42.41 Aligned_cols=45 Identities=16% Similarity=0.251 Sum_probs=38.1
Q ss_pred CCCcEEecceEEEEEeeCCeeEEEecCCCEEeecEEEecCCCchh
Q 021278 25 PSGTIRYSSQVVSIEESGHFKLLHLADGTILKTKVLIGCDGVNSI 69 (315)
Q Consensus 25 ~~~~i~~~~~v~~~~~~~~~~~v~~~~g~~~~ad~vVgADG~~S~ 69 (315)
.+++++.+++++++..++....|.+++|+++.+|+||-|-|....
T Consensus 195 ~GV~v~~~~~v~~i~~~~~~~~v~~~dG~~i~~D~Vi~a~G~~Pn 239 (785)
T TIGR02374 195 KGLTFLLEKDTVEIVGATKADRIRFKDGSSLEADLIVMAAGIRPN 239 (785)
T ss_pred cCCEEEeCCceEEEEcCCceEEEEECCCCEEEcCEEEECCCCCcC
Confidence 369999999999997655556788999999999999999997643
No 152
>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]
Probab=85.96 E-value=3.1 Score=38.77 Aligned_cols=47 Identities=17% Similarity=0.239 Sum_probs=40.9
Q ss_pred CCCcEEecceEEEEEeeCCeeEEEecCCC--EEeecEEEecCCCchhhh
Q 021278 25 PSGTIRYSSQVVSIEESGHFKLLHLADGT--ILKTKVLIGCDGVNSIVA 71 (315)
Q Consensus 25 ~~~~i~~~~~v~~~~~~~~~~~v~~~~g~--~~~ad~vVgADG~~S~vr 71 (315)
.+++++.+++++.++..++++.+++++|+ ++++|.|+.|-|+.-.+-
T Consensus 227 ~gv~i~~~~~v~~~~~~~~~v~v~~~~g~~~~~~ad~vLvAiGR~Pn~~ 275 (454)
T COG1249 227 GGVKILLNTKVTAVEKKDDGVLVTLEDGEGGTIEADAVLVAIGRKPNTD 275 (454)
T ss_pred CCeEEEccceEEEEEecCCeEEEEEecCCCCEEEeeEEEEccCCccCCC
Confidence 45899999999999998877889999886 799999999999975554
No 153
>PTZ00052 thioredoxin reductase; Provisional
Probab=85.63 E-value=3 Score=39.51 Aligned_cols=47 Identities=13% Similarity=0.072 Sum_probs=40.1
Q ss_pred CCCcEEecceEEEEEeeCCeeEEEecCCCEEeecEEEecCCCchhhh
Q 021278 25 PSGTIRYSSQVVSIEESGHFKLLHLADGTILKTKVLIGCDGVNSIVA 71 (315)
Q Consensus 25 ~~~~i~~~~~v~~~~~~~~~~~v~~~~g~~~~ad~vVgADG~~S~vr 71 (315)
.+++++.++++.+++..++.+.|.+++|+++.+|.||-|-|....+.
T Consensus 235 ~GV~i~~~~~v~~v~~~~~~~~v~~~~g~~i~~D~vl~a~G~~pn~~ 281 (499)
T PTZ00052 235 QGTLFLEGVVPINIEKMDDKIKVLFSDGTTELFDTVLYATGRKPDIK 281 (499)
T ss_pred cCCEEEcCCeEEEEEEcCCeEEEEECCCCEEEcCEEEEeeCCCCCcc
Confidence 36999999999999876666778888899999999999999987654
No 154
>TIGR01423 trypano_reduc trypanothione-disulfide reductase. Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.
Probab=85.33 E-value=3.1 Score=39.21 Aligned_cols=47 Identities=13% Similarity=0.076 Sum_probs=39.0
Q ss_pred CCCcEEecceEEEEEeeCCe-eEEEecCCCEEeecEEEecCCCchhhh
Q 021278 25 PSGTIRYSSQVVSIEESGHF-KLLHLADGTILKTKVLIGCDGVNSIVA 71 (315)
Q Consensus 25 ~~~~i~~~~~v~~~~~~~~~-~~v~~~~g~~~~ad~vVgADG~~S~vr 71 (315)
.+++++.++++.+++.++++ ..|.+.+++++++|.||-|-|....+.
T Consensus 244 ~GI~i~~~~~v~~i~~~~~~~~~v~~~~g~~i~~D~vl~a~G~~Pn~~ 291 (486)
T TIGR01423 244 NGINIMTNENPAKVTLNADGSKHVTFESGKTLDVDVVMMAIGRVPRTQ 291 (486)
T ss_pred cCCEEEcCCEEEEEEEcCCceEEEEEcCCCEEEcCEEEEeeCCCcCcc
Confidence 46999999999999876544 567778888999999999999886654
No 155
>KOG1336 consensus Monodehydroascorbate/ferredoxin reductase [General function prediction only]
Probab=85.12 E-value=2 Score=39.55 Aligned_cols=45 Identities=18% Similarity=0.221 Sum_probs=39.9
Q ss_pred CCcEEecceEEEEEeeCCe--eEEEecCCCEEeecEEEecCCCchhh
Q 021278 26 SGTIRYSSQVVSIEESGHF--KLLHLADGTILKTKVLIGCDGVNSIV 70 (315)
Q Consensus 26 ~~~i~~~~~v~~~~~~~~~--~~v~~~~g~~~~ad~vVgADG~~S~v 70 (315)
++++..++.+++++.++++ ..|.+.+|.++.||+||-.-|+.+.+
T Consensus 269 gVk~~~~t~~s~l~~~~~Gev~~V~l~dg~~l~adlvv~GiG~~p~t 315 (478)
T KOG1336|consen 269 GVKFYLGTVVSSLEGNSDGEVSEVKLKDGKTLEADLVVVGIGIKPNT 315 (478)
T ss_pred CeEEEEecceeecccCCCCcEEEEEeccCCEeccCeEEEeecccccc
Confidence 4999999999999998754 77999999999999999999987654
No 156
>TIGR01176 fum_red_Fp fumarate reductase, flavoprotein subunit. The terms succinate dehydrogenase and fumarate reductase may be used interchangeably in certain systems. However, a number of species have distinct complexes, with the fumarate reductase active under anaerobic conditions. This model represents the fumarate reductase flavoprotein subunit from several such species in which a distinct succinate dehydrogenase is also found. Not all bona fide fumarate reductases will be found by this model.
Probab=84.89 E-value=3.4 Score=39.87 Aligned_cols=57 Identities=16% Similarity=0.087 Sum_probs=42.7
Q ss_pred HHHHHHHHhhC---CCCcEEecceEEEEEeeCCeeE----EEecCCC--EEeecEEEecCCCchhh
Q 021278 14 KLLLETLAKEL---PSGTIRYSSQVVSIEESGHFKL----LHLADGT--ILKTKVLIGCDGVNSIV 70 (315)
Q Consensus 14 ~~L~~~L~~~~---~~~~i~~~~~v~~~~~~~~~~~----v~~~~g~--~~~ad~vVgADG~~S~v 70 (315)
..|.+.|.+++ ++++++.++.++++..+++.+. +...+|. .+.|+.||.|+|-.|.+
T Consensus 132 ~~i~~~L~~~~~~~~~i~i~~~~~v~~Li~~~g~v~Gv~~~~~~~g~~~~i~AkaVILATGG~~~~ 197 (580)
T TIGR01176 132 FHMLHTLFQTSLTYPQIMRYDEWFVTDLLVDDGRVCGLVAIEMAEGRLVTILADAVVLATGGAGRV 197 (580)
T ss_pred HHHHHHHHHHHHhcCCCEEEeCeEEEEEEeeCCEEEEEEEEEcCCCcEEEEecCEEEEcCCCCccc
Confidence 35677777654 4689999999999987766532 2334664 68999999999999865
No 157
>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.
Probab=84.82 E-value=3.3 Score=38.57 Aligned_cols=47 Identities=21% Similarity=0.199 Sum_probs=38.7
Q ss_pred CCCcEEecceEEEEEeeCCe-eEEEecCC-CEEeecEEEecCCCchhhh
Q 021278 25 PSGTIRYSSQVVSIEESGHF-KLLHLADG-TILKTKVLIGCDGVNSIVA 71 (315)
Q Consensus 25 ~~~~i~~~~~v~~~~~~~~~-~~v~~~~g-~~~~ad~vVgADG~~S~vr 71 (315)
.+++++.++++.+++.++++ +.|.+++| +++.+|.||-|-|....+.
T Consensus 220 ~gI~i~~~~~v~~i~~~~~~~~~v~~~~g~~~i~~D~vi~a~G~~pn~~ 268 (450)
T TIGR01421 220 EGINVHKLSKPVKVEKTVEGKLVIHFEDGKSIDDVDELIWAIGRKPNTK 268 (450)
T ss_pred cCCEEEcCCEEEEEEEeCCceEEEEECCCcEEEEcCEEEEeeCCCcCcc
Confidence 46999999999999876544 67888888 5799999999999886653
No 158
>TIGR01812 sdhA_frdA_Gneg succinate dehydrogenase or fumarate reductase, flavoprotein subunitGram-negative/mitochondrial subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in Gram-negative bacteria, mitochondria, and some Archaea. Mitochondrial forms interact with ubiquinone and are designated EC 1.3.5.1, but can be degraded to 1.3.99.1. Some isozymes in E. coli and other species run primarily in the opposite direction and are designated fumarate reductase.
Probab=84.46 E-value=3.1 Score=40.03 Aligned_cols=58 Identities=16% Similarity=0.122 Sum_probs=41.9
Q ss_pred HHHHHHHhhC--CCCcEEecceEEEEEeeCCeeE-EE---ecCCC--EEeecEEEecCCCchhhhh
Q 021278 15 LLLETLAKEL--PSGTIRYSSQVVSIEESGHFKL-LH---LADGT--ILKTKVLIGCDGVNSIVAK 72 (315)
Q Consensus 15 ~L~~~L~~~~--~~~~i~~~~~v~~~~~~~~~~~-v~---~~~g~--~~~ad~vVgADG~~S~vr~ 72 (315)
.+...|.+++ .++++++++.++++..+++.+. |. ..+|+ .+.|+.||.|+|..|.+..
T Consensus 130 ~i~~~L~~~~~~~gv~i~~~~~v~~L~~~~g~v~Gv~~~~~~~g~~~~i~Ak~VVlAtGG~~~~~~ 195 (566)
T TIGR01812 130 ALLHTLYEQCLKLGVSFFNEYFALDLIHDDGRVRGVVAYDLKTGEIVFFRAKAVVLATGGYGRIYK 195 (566)
T ss_pred HHHHHHHHHHHHcCCEEEeccEEEEEEEeCCEEEEEEEEECCCCcEEEEECCeEEECCCcccCCCC
Confidence 3555555544 3699999999999987766532 22 24564 6899999999999987654
No 159
>PRK06115 dihydrolipoamide dehydrogenase; Reviewed
Probab=84.44 E-value=3.6 Score=38.54 Aligned_cols=46 Identities=15% Similarity=0.159 Sum_probs=36.3
Q ss_pred CCCcEEecceEEEEEeeCCeeEEEec---CC--CEEeecEEEecCCCchhh
Q 021278 25 PSGTIRYSSQVVSIEESGHFKLLHLA---DG--TILKTKVLIGCDGVNSIV 70 (315)
Q Consensus 25 ~~~~i~~~~~v~~~~~~~~~~~v~~~---~g--~~~~ad~vVgADG~~S~v 70 (315)
.+++++.+++|.+++.+++++.+.+. +| +++.+|.||-|-|....+
T Consensus 228 ~gV~i~~~~~V~~i~~~~~~v~v~~~~~~~g~~~~i~~D~vi~a~G~~pn~ 278 (466)
T PRK06115 228 QGMKFKLGSKVTGATAGADGVSLTLEPAAGGAAETLQADYVLVAIGRRPYT 278 (466)
T ss_pred cCCEEEECcEEEEEEEcCCeEEEEEEEcCCCceeEEEeCEEEEccCCcccc
Confidence 36999999999999876666666553 23 479999999999988654
No 160
>TIGR03364 HpnW_proposed FAD dependent oxidoreductase TIGR03364. This clade of FAD dependent oxidoreductases (members of the pfam01266 family) is syntenically associated with a family of proposed phosphonatase-like enzymes (TIGR03351) and is also found (less frequently) in association with phosphonate transporter components. A likely role for this enzyme involves the oxidative deamination of an aminophosphonate differring slightly from 2-aminoethylphosphonate, possibly 1-hydroxy-2-aminoethylphosphonate (see the comments for TIGR03351). Many members of the larger FAD dependent oxidoreductase family act as amino acid oxidative deaminases.
Probab=84.39 E-value=3.4 Score=37.12 Aligned_cols=55 Identities=18% Similarity=0.275 Sum_probs=41.3
Q ss_pred eeeHHHHHHHHHhhC---CCCcEEecceEEEEEeeCCeeEEEecCCCEEeecEEEecCCCchh
Q 021278 10 CVRRKLLLETLAKEL---PSGTIRYSSQVVSIEESGHFKLLHLADGTILKTKVLIGCDGVNSI 69 (315)
Q Consensus 10 ~i~R~~L~~~L~~~~---~~~~i~~~~~v~~~~~~~~~~~v~~~~g~~~~ad~vVgADG~~S~ 69 (315)
.++=..+...|.+.+ .+++++.+++|.+++.. .|...+| +++||.||-|.|.+|.
T Consensus 141 ~v~p~~~~~~l~~~~~~~~Gv~i~~~t~V~~i~~~----~v~t~~g-~i~a~~VV~A~G~~s~ 198 (365)
T TIGR03364 141 RVEPREAIPALAAYLAEQHGVEFHWNTAVTSVETG----TVRTSRG-DVHADQVFVCPGADFE 198 (365)
T ss_pred eECHHHHHHHHHHHHHhcCCCEEEeCCeEEEEecC----eEEeCCC-cEEeCEEEECCCCChh
Confidence 355566777777654 37999999999999643 4666666 4789999999999873
No 161
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Probab=84.27 E-value=3.3 Score=38.26 Aligned_cols=40 Identities=23% Similarity=0.340 Sum_probs=33.4
Q ss_pred CCCcEEecceEEEEEeeCCeeEEEecCCCEEeecEEEecCCCch
Q 021278 25 PSGTIRYSSQVVSIEESGHFKLLHLADGTILKTKVLIGCDGVNS 68 (315)
Q Consensus 25 ~~~~i~~~~~v~~~~~~~~~~~v~~~~g~~~~ad~vVgADG~~S 68 (315)
.+++++.+++|.++.. + .|.+++|+++.+|+||-|-|...
T Consensus 241 ~gV~v~~~~~v~~v~~--~--~v~~~~g~~i~~d~vi~~~G~~~ 280 (424)
T PTZ00318 241 LGVDIRTKTAVKEVLD--K--EVVLKDGEVIPTGLVVWSTGVGP 280 (424)
T ss_pred CCCEEEeCCeEEEEeC--C--EEEECCCCEEEccEEEEccCCCC
Confidence 4699999999998864 3 36688999999999999999653
No 162
>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated
Probab=84.23 E-value=4.2 Score=37.96 Aligned_cols=47 Identities=9% Similarity=0.070 Sum_probs=35.6
Q ss_pred CCCcEEecceEEEEEeeCCeeEEEecCC-CEEeecEEEecCCCchhhh
Q 021278 25 PSGTIRYSSQVVSIEESGHFKLLHLADG-TILKTKVLIGCDGVNSIVA 71 (315)
Q Consensus 25 ~~~~i~~~~~v~~~~~~~~~~~v~~~~g-~~~~ad~vVgADG~~S~vr 71 (315)
.++++++++++.+++.++..+.+...++ .++++|+||-|.|....+.
T Consensus 224 ~GI~i~~~~~V~~i~~~~~~v~~~~~g~~~~i~~D~vivA~G~~p~~~ 271 (458)
T PRK06912 224 DGVKIFTGAALKGLNSYKKQALFEYEGSIQEVNAEFVLVSVGRKPRVQ 271 (458)
T ss_pred CCCEEEECCEEEEEEEcCCEEEEEECCceEEEEeCEEEEecCCccCCC
Confidence 3699999999999987665554443222 3799999999999887653
No 163
>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B.
Probab=84.07 E-value=2.4 Score=37.88 Aligned_cols=41 Identities=22% Similarity=0.203 Sum_probs=31.9
Q ss_pred CcEEecceEEEEEeeCC-eeEEEecCC-----CEEeecEEEecCCCc
Q 021278 27 GTIRYSSQVVSIEESGH-FKLLHLADG-----TILKTKVLIGCDGVN 67 (315)
Q Consensus 27 ~~i~~~~~v~~~~~~~~-~~~v~~~~g-----~~~~ad~vVgADG~~ 67 (315)
+.++.+++|++++..++ ++.+.+.+. .++++|+||.|.|.+
T Consensus 294 ~~l~~~~~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~D~VilATGy~ 340 (341)
T PF13434_consen 294 LRLLPNTEVTSAEQDGDGGVRLTLRHRQTGEEETLEVDAVILATGYR 340 (341)
T ss_dssp SEEETTEEEEEEEEES-SSEEEEEEETTT--EEEEEESEEEE---EE
T ss_pred eEEeCCCEEEEEEECCCCEEEEEEEECCCCCeEEEecCEEEEcCCcc
Confidence 89999999999999885 788888762 378999999999963
No 164
>TIGR01813 flavo_cyto_c flavocytochrome c. This model describes a family of redox proteins related to the succinate dehydrogenases and fumarate reductases of E. coli, mitochondria, and other well-characterized systems. A member of this family from Shewanella frigidimarina NCIMB400 is characterized as a water-soluble periplasmic protein with four heme groups, a non-covalently bound FAD, and essentially unidirectional fumarate reductase activity. At least seven distinct members of this family are found in Shewanella oneidensis, a species able to use a wide variety of pathways for respiraton.
Probab=83.93 E-value=3.6 Score=38.14 Aligned_cols=56 Identities=14% Similarity=0.100 Sum_probs=40.6
Q ss_pred HHHHHHHHhhC--CCCcEEecceEEEEEeeCC-e---eEEEecCCC--EEeecEEEecCCCchh
Q 021278 14 KLLLETLAKEL--PSGTIRYSSQVVSIEESGH-F---KLLHLADGT--ILKTKVLIGCDGVNSI 69 (315)
Q Consensus 14 ~~L~~~L~~~~--~~~~i~~~~~v~~~~~~~~-~---~~v~~~~g~--~~~ad~vVgADG~~S~ 69 (315)
..|.+.|.+.+ .+++++++++|+++..+++ . +.+...+++ .+.++.||-|.|..+.
T Consensus 130 ~~l~~~l~~~~~~~gv~i~~~~~v~~l~~~~~g~v~Gv~~~~~~g~~~~~~a~~VVlAtGg~~~ 193 (439)
T TIGR01813 130 AEIVQKLYKKAKKEGIDTRLNSKVEDLIQDDQGTVVGVVVKGKGKGIYIKAAKAVVLATGGFGS 193 (439)
T ss_pred HHHHHHHHHHHHHcCCEEEeCCEeeEeEECCCCcEEEEEEEeCCCeEEEEecceEEEecCCCCC
Confidence 35666676655 3599999999999988644 2 333333443 4789999999998886
No 165
>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=83.61 E-value=4.1 Score=37.79 Aligned_cols=54 Identities=17% Similarity=0.190 Sum_probs=40.2
Q ss_pred HHHHHHhhC--CCCcEEecceEEEEEeeCCeeEEEecCCCEEeecEEEecCCCchhh
Q 021278 16 LLETLAKEL--PSGTIRYSSQVVSIEESGHFKLLHLADGTILKTKVLIGCDGVNSIV 70 (315)
Q Consensus 16 L~~~L~~~~--~~~~i~~~~~v~~~~~~~~~~~v~~~~g~~~~ad~vVgADG~~S~v 70 (315)
+.+.|.+.+ .+++++.++++.+++.+++++.+...++ ++.+|.||-|-|....+
T Consensus 201 ~~~~l~~~l~~~gV~v~~~~~v~~i~~~~~~v~v~~~~g-~i~~D~vl~a~G~~pn~ 256 (441)
T PRK08010 201 IADNIATILRDQGVDIILNAHVERISHHENQVQVHSEHA-QLAVDALLIASGRQPAT 256 (441)
T ss_pred HHHHHHHHHHhCCCEEEeCCEEEEEEEcCCEEEEEEcCC-eEEeCEEEEeecCCcCC
Confidence 334444433 3699999999999987766676765554 58999999999988754
No 166
>PRK06370 mercuric reductase; Validated
Probab=83.58 E-value=4.7 Score=37.66 Aligned_cols=47 Identities=11% Similarity=0.126 Sum_probs=36.5
Q ss_pred CCCcEEecceEEEEEeeCCeeEEEec--C-CCEEeecEEEecCCCchhhh
Q 021278 25 PSGTIRYSSQVVSIEESGHFKLLHLA--D-GTILKTKVLIGCDGVNSIVA 71 (315)
Q Consensus 25 ~~~~i~~~~~v~~~~~~~~~~~v~~~--~-g~~~~ad~vVgADG~~S~vr 71 (315)
.+++++++++|.+++.+++++.|.+. + +.++.+|.||-|-|......
T Consensus 225 ~GV~i~~~~~V~~i~~~~~~~~v~~~~~~~~~~i~~D~Vi~A~G~~pn~~ 274 (463)
T PRK06370 225 EGIDVRLNAECIRVERDGDGIAVGLDCNGGAPEITGSHILVAVGRVPNTD 274 (463)
T ss_pred CCCEEEeCCEEEEEEEcCCEEEEEEEeCCCceEEEeCEEEECcCCCcCCC
Confidence 46999999999999887666555442 3 35799999999999876543
No 167
>PRK11101 glpA sn-glycerol-3-phosphate dehydrogenase subunit A; Provisional
Probab=83.51 E-value=3.4 Score=39.58 Aligned_cols=68 Identities=13% Similarity=0.195 Sum_probs=47.7
Q ss_pred eeeHHHHHHHHHhhC--CCCcEEecceEEEEEeeCCeeE-EEec---CC--CEEeecEEEecCCCchh-hhhhhCCC
Q 021278 10 CVRRKLLLETLAKEL--PSGTIRYSSQVVSIEESGHFKL-LHLA---DG--TILKTKVLIGCDGVNSI-VAKWLGFK 77 (315)
Q Consensus 10 ~i~R~~L~~~L~~~~--~~~~i~~~~~v~~~~~~~~~~~-v~~~---~g--~~~~ad~vVgADG~~S~-vr~~l~~~ 77 (315)
.++-..|...|...+ -++++..+++|+++..+++++. |.+. ++ .+++|+.||-|.|.+|. +.+..+..
T Consensus 145 ~vdp~rl~~al~~~A~~~Ga~i~~~t~V~~i~~~~~~v~gv~v~d~~~g~~~~i~A~~VVnAaG~wa~~l~~~~g~~ 221 (546)
T PRK11101 145 TVDPFRLTAANMLDAKEHGAQILTYHEVTGLIREGDTVCGVRVRDHLTGETQEIHAPVVVNAAGIWGQHIAEYADLR 221 (546)
T ss_pred EECHHHHHHHHHHHHHhCCCEEEeccEEEEEEEcCCeEEEEEEEEcCCCcEEEEECCEEEECCChhHHHHHHhcCCC
Confidence 456566666665544 3599999999999988776532 4442 23 37999999999999874 45555543
No 168
>COG0578 GlpA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=82.94 E-value=44 Score=31.82 Aligned_cols=53 Identities=13% Similarity=0.172 Sum_probs=40.9
Q ss_pred CCCcEEecceEEEEEeeCCeeEEEecCC---C--EEeecEEEecCCCchhh-hhhhCCC
Q 021278 25 PSGTIRYSSQVVSIEESGHFKLLHLADG---T--ILKTKVLIGCDGVNSIV-AKWLGFK 77 (315)
Q Consensus 25 ~~~~i~~~~~v~~~~~~~~~~~v~~~~g---~--~~~ad~vVgADG~~S~v-r~~l~~~ 77 (315)
.++++...++|+++..+++-+.|.+.|. + +++|+.||=|-|.++-- ++..+..
T Consensus 177 ~Ga~il~~~~v~~~~re~~v~gV~~~D~~tg~~~~ira~~VVNAaGpW~d~i~~~~~~~ 235 (532)
T COG0578 177 HGAEILTYTRVESLRREGGVWGVEVEDRETGETYEIRARAVVNAAGPWVDEILEMAGLE 235 (532)
T ss_pred cccchhhcceeeeeeecCCEEEEEEEecCCCcEEEEEcCEEEECCCccHHHHHHhhccc
Confidence 4589999999999999887445666553 2 69999999999999854 5555433
No 169
>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase. Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.
Probab=82.86 E-value=4.6 Score=37.24 Aligned_cols=43 Identities=19% Similarity=0.273 Sum_probs=35.2
Q ss_pred CCCcEEecceEEEEEeeCCeeEEEecCCCEEeecEEEecCCCchh
Q 021278 25 PSGTIRYSSQVVSIEESGHFKLLHLADGTILKTKVLIGCDGVNSI 69 (315)
Q Consensus 25 ~~~~i~~~~~v~~~~~~~~~~~v~~~~g~~~~ad~vVgADG~~S~ 69 (315)
.++++++++++.+++.++. + +.+.+|+++.+|.||.|.|....
T Consensus 192 ~gV~v~~~~~v~~i~~~~~-~-v~~~~g~~i~~D~vi~a~G~~p~ 234 (427)
T TIGR03385 192 HEINLRLNEEVDSIEGEER-V-KVFTSGGVYQADMVILATGIKPN 234 (427)
T ss_pred cCCEEEeCCEEEEEecCCC-E-EEEcCCCEEEeCEEEECCCccCC
Confidence 3699999999999976443 3 56778899999999999998744
No 170
>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein. Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.
Probab=82.69 E-value=3.8 Score=36.84 Aligned_cols=40 Identities=20% Similarity=0.258 Sum_probs=33.5
Q ss_pred CCCcEEecceEEEEEeeCCeeEEEecCCCEEeecEEEecCCCch
Q 021278 25 PSGTIRYSSQVVSIEESGHFKLLHLADGTILKTKVLIGCDGVNS 68 (315)
Q Consensus 25 ~~~~i~~~~~v~~~~~~~~~~~v~~~~g~~~~ad~vVgADG~~S 68 (315)
.+++++.++++.+++.+ .|.+++|+++.+|+||-|-|...
T Consensus 204 ~gV~v~~~~~v~~i~~~----~v~~~~g~~i~~D~vi~a~G~~p 243 (364)
T TIGR03169 204 RGIEVHEGAPVTRGPDG----ALILADGRTLPADAILWATGARA 243 (364)
T ss_pred CCCEEEeCCeeEEEcCC----eEEeCCCCEEecCEEEEccCCCh
Confidence 36999999999988532 47778899999999999999764
No 171
>TIGR02485 CobZ_N-term precorrin 3B synthase CobZ. CobZ is essential for cobalamin biosynthesis (by knockout of the R. capsulatus gene ) and is complemented by the characterized precorrin 3B synthase CobG. The enzyme has been shown to contain flavin, heme and Fe-S cluster cofactors and is believed to require dioxygen as a substrate. This model identifies the N-terminal portion of the R. capsulatus gene which, in other species exists as a separate protein. The C-terminal portion is homologous to the 2-component signal transduction system protein CitB (TIGR02484).
Probab=82.33 E-value=4.7 Score=37.28 Aligned_cols=59 Identities=19% Similarity=0.116 Sum_probs=41.9
Q ss_pred HHHHHHHhhC--CCCcEEecceEEEEEeeC--Cee-EEEecC-CCEEeecEEEecCCCchhhhhh
Q 021278 15 LLLETLAKEL--PSGTIRYSSQVVSIEESG--HFK-LLHLAD-GTILKTKVLIGCDGVNSIVAKW 73 (315)
Q Consensus 15 ~L~~~L~~~~--~~~~i~~~~~v~~~~~~~--~~~-~v~~~~-g~~~~ad~vVgADG~~S~vr~~ 73 (315)
.+.+.|.+.+ .+++|+++++|+++..++ +.+ .|...+ +.+++|+.||-|.|-.+.-+..
T Consensus 124 ~l~~~L~~~a~~~Gv~i~~~~~v~~l~~~~~~g~v~gv~~~~~~~~i~ak~VIlAtGG~~~n~~~ 188 (432)
T TIGR02485 124 ALTNALYSSAERLGVEIRYGIAVDRIPPEAFDGAHDGPLTTVGTHRITTQALVLAAGGLGANRDW 188 (432)
T ss_pred HHHHHHHHHHHHcCCEEEeCCEEEEEEecCCCCeEEEEEEcCCcEEEEcCEEEEcCCCcccCHHH
Confidence 4666676655 359999999999998763 333 234433 3589999999999987765443
No 172
>TIGR02053 MerA mercuric reductase. This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.
Probab=82.24 E-value=4.6 Score=37.73 Aligned_cols=47 Identities=15% Similarity=0.136 Sum_probs=36.7
Q ss_pred CCCcEEecceEEEEEeeCCeeEEEecC---CCEEeecEEEecCCCchhhh
Q 021278 25 PSGTIRYSSQVVSIEESGHFKLLHLAD---GTILKTKVLIGCDGVNSIVA 71 (315)
Q Consensus 25 ~~~~i~~~~~v~~~~~~~~~~~v~~~~---g~~~~ad~vVgADG~~S~vr 71 (315)
.+++++++++|.+++.+++.+.+++++ ++++++|.||-|-|....+.
T Consensus 220 ~gV~i~~~~~V~~i~~~~~~~~v~~~~~~~~~~i~~D~ViiA~G~~p~~~ 269 (463)
T TIGR02053 220 EGIEVVTSAQVKAVSVRGGGKIITVEKPGGQGEVEADELLVATGRRPNTD 269 (463)
T ss_pred cCCEEEcCcEEEEEEEcCCEEEEEEEeCCCceEEEeCEEEEeECCCcCCC
Confidence 369999999999998766665565542 35899999999999876543
No 173
>COG1233 Phytoene dehydrogenase and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=81.86 E-value=2.4 Score=39.99 Aligned_cols=53 Identities=21% Similarity=0.250 Sum_probs=41.7
Q ss_pred HHHHHHHHhhC--CCCcEEecceEEEEEeeCC-eeEEEecCCCEEeecEEEecCCC
Q 021278 14 KLLLETLAKEL--PSGTIRYSSQVVSIEESGH-FKLLHLADGTILKTKVLIGCDGV 66 (315)
Q Consensus 14 ~~L~~~L~~~~--~~~~i~~~~~v~~~~~~~~-~~~v~~~~g~~~~ad~vVgADG~ 66 (315)
..|.+.|.+.+ .+++|++|++|.+|..+++ ++++...+|+.+++|.||.+=..
T Consensus 224 ~al~~aL~~~~~~~Gg~I~~~~~V~~I~v~~g~g~~~~~~~g~~~~ad~vv~~~~~ 279 (487)
T COG1233 224 GALVDALAELAREHGGEIRTGAEVSQILVEGGKGVGVRTSDGENIEADAVVSNADP 279 (487)
T ss_pred HHHHHHHHHHHHHcCCEEECCCceEEEEEeCCcceEEeccccceeccceeEecCch
Confidence 45667777766 3599999999999998876 47788888878899988876555
No 174
>PRK05329 anaerobic glycerol-3-phosphate dehydrogenase subunit B; Validated
Probab=81.83 E-value=5.3 Score=36.90 Aligned_cols=53 Identities=17% Similarity=0.157 Sum_probs=39.9
Q ss_pred HHHHHHHhhC--CCCcEEecceEEEEEeeCCeeEEEe-cCC--CEEeecEEEecCCCc
Q 021278 15 LLLETLAKEL--PSGTIRYSSQVVSIEESGHFKLLHL-ADG--TILKTKVLIGCDGVN 67 (315)
Q Consensus 15 ~L~~~L~~~~--~~~~i~~~~~v~~~~~~~~~~~v~~-~~g--~~~~ad~vVgADG~~ 67 (315)
.+.+.|.+++ .+++++.+++|.+++.+++++.+.. .++ .+++||.||-|-|..
T Consensus 260 rL~~aL~~~l~~~Gv~I~~g~~V~~v~~~~~~V~~v~~~~g~~~~i~AD~VVLAtGrf 317 (422)
T PRK05329 260 RLQNALRRAFERLGGRIMPGDEVLGAEFEGGRVTAVWTRNHGDIPLRARHFVLATGSF 317 (422)
T ss_pred HHHHHHHHHHHhCCCEEEeCCEEEEEEEeCCEEEEEEeeCCceEEEECCEEEEeCCCc
Confidence 4666666655 3689999999999998777765433 344 368999999999975
No 175
>PRK14694 putative mercuric reductase; Provisional
Probab=81.82 E-value=5.9 Score=37.10 Aligned_cols=56 Identities=13% Similarity=0.144 Sum_probs=41.0
Q ss_pred HHHHHHHhhC--CCCcEEecceEEEEEeeCCeeEEEecCCCEEeecEEEecCCCchhhh
Q 021278 15 LLLETLAKEL--PSGTIRYSSQVVSIEESGHFKLLHLADGTILKTKVLIGCDGVNSIVA 71 (315)
Q Consensus 15 ~L~~~L~~~~--~~~~i~~~~~v~~~~~~~~~~~v~~~~g~~~~ad~vVgADG~~S~vr 71 (315)
.+.+.+.+.+ .+++++.++++.+++.+++.+.+...+ .++++|.||-|-|....+.
T Consensus 219 ~~~~~l~~~l~~~GI~v~~~~~v~~i~~~~~~~~v~~~~-~~i~~D~vi~a~G~~pn~~ 276 (468)
T PRK14694 219 AVGEAIEAAFRREGIEVLKQTQASEVDYNGREFILETNA-GTLRAEQLLVATGRTPNTE 276 (468)
T ss_pred HHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCEEEEEECC-CEEEeCEEEEccCCCCCcC
Confidence 3444444443 469999999999998766666666544 4799999999999887653
No 176
>PRK14989 nitrite reductase subunit NirD; Provisional
Probab=81.65 E-value=5.3 Score=40.48 Aligned_cols=46 Identities=20% Similarity=0.291 Sum_probs=38.1
Q ss_pred CCCcEEecceEEEEEeeC--CeeEEEecCCCEEeecEEEecCCCchhh
Q 021278 25 PSGTIRYSSQVVSIEESG--HFKLLHLADGTILKTKVLIGCDGVNSIV 70 (315)
Q Consensus 25 ~~~~i~~~~~v~~~~~~~--~~~~v~~~~g~~~~ad~vVgADG~~S~v 70 (315)
.+++++.++++.++..++ ....|.+.+|+++.+|+||-|-|.....
T Consensus 200 ~GV~v~~~~~v~~I~~~~~~~~~~v~~~dG~~i~~D~Vv~A~G~rPn~ 247 (847)
T PRK14989 200 MGVRVHTSKNTLEIVQEGVEARKTMRFADGSELEVDFIVFSTGIRPQD 247 (847)
T ss_pred CCCEEEcCCeEEEEEecCCCceEEEEECCCCEEEcCEEEECCCcccCc
Confidence 369999999999997653 2356888999999999999999977544
No 177
>KOG2820 consensus FAD-dependent oxidoreductase [General function prediction only]
Probab=81.63 E-value=34 Score=30.51 Aligned_cols=63 Identities=22% Similarity=0.246 Sum_probs=45.2
Q ss_pred HHHHHhhC--CCCcEEecceEEEEEee---CCeeEEEecCCCEEeecEEEecCCCc--hhhhhhhCCCCC
Q 021278 17 LETLAKEL--PSGTIRYSSQVVSIEES---GHFKLLHLADGTILKTKVLIGCDGVN--SIVAKWLGFKNP 79 (315)
Q Consensus 17 ~~~L~~~~--~~~~i~~~~~v~~~~~~---~~~~~v~~~~g~~~~ad~vVgADG~~--S~vr~~l~~~~~ 79 (315)
.+.|.+.+ -++.++.|.+|..++.. +..+.|...+|+.+.|+=+|-+-|++ +.++..+++..|
T Consensus 156 lk~~~~~~~~~G~i~~dg~~v~~~~~~~e~~~~v~V~Tt~gs~Y~akkiI~t~GaWi~klL~~~~~~~~P 225 (399)
T KOG2820|consen 156 LKALQDKARELGVIFRDGEKVKFIKFVDEEGNHVSVQTTDGSIYHAKKIIFTVGAWINKLLPTSLAIGFP 225 (399)
T ss_pred HHHHHHHHHHcCeEEecCcceeeEeeccCCCceeEEEeccCCeeecceEEEEecHHHHhhcCcccccCCc
Confidence 34444444 35899999999998854 33477888899999999999999975 444554555444
No 178
>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein. This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.
Probab=81.04 E-value=6.2 Score=37.19 Aligned_cols=46 Identities=7% Similarity=0.001 Sum_probs=37.5
Q ss_pred CCCcEEecceEEEEEeeCCeeEEEecCC---CEEeecEEEecCCCchhh
Q 021278 25 PSGTIRYSSQVVSIEESGHFKLLHLADG---TILKTKVLIGCDGVNSIV 70 (315)
Q Consensus 25 ~~~~i~~~~~v~~~~~~~~~~~v~~~~g---~~~~ad~vVgADG~~S~v 70 (315)
.+++++.++++.+++..++.+.|++.++ +++.+|.||-|=|....+
T Consensus 233 ~gV~i~~~~~v~~v~~~~~~~~v~~~~~~~~~~i~~D~vl~a~G~~pn~ 281 (484)
T TIGR01438 233 HGVKFKRQFVPIKVEQIEAKVKVTFTDSTNGIEEEYDTVLLAIGRDACT 281 (484)
T ss_pred cCCEEEeCceEEEEEEcCCeEEEEEecCCcceEEEeCEEEEEecCCcCC
Confidence 3699999999999987666677777766 379999999999986554
No 179
>PRK08274 tricarballylate dehydrogenase; Validated
Probab=80.58 E-value=5 Score=37.54 Aligned_cols=58 Identities=21% Similarity=0.222 Sum_probs=40.9
Q ss_pred HHHHHHHHhhC--CCCcEEecceEEEEEeeCCeeE-EEe--cCC--CEEeecEEEecCCCchhhh
Q 021278 14 KLLLETLAKEL--PSGTIRYSSQVVSIEESGHFKL-LHL--ADG--TILKTKVLIGCDGVNSIVA 71 (315)
Q Consensus 14 ~~L~~~L~~~~--~~~~i~~~~~v~~~~~~~~~~~-v~~--~~g--~~~~ad~vVgADG~~S~vr 71 (315)
..+...|.+.+ .+++++++++|+++..+++++. |.. .++ .+++|+.||.|.|..+.-+
T Consensus 131 ~~l~~~l~~~~~~~gv~i~~~t~v~~l~~~~g~v~gv~~~~~~g~~~~i~a~~VIlAtGg~~~n~ 195 (466)
T PRK08274 131 KALVNALYRSAERLGVEIRYDAPVTALELDDGRFVGARAGSAAGGAERIRAKAVVLAAGGFESNR 195 (466)
T ss_pred HHHHHHHHHHHHHCCCEEEcCCEEEEEEecCCeEEEEEEEccCCceEEEECCEEEECCCCCCCCH
Confidence 34666666654 3599999999999987665532 444 233 3689999999999766433
No 180
>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []. Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....
Probab=80.36 E-value=3.6 Score=39.25 Aligned_cols=60 Identities=18% Similarity=0.152 Sum_probs=45.8
Q ss_pred eeeHHHHHHHHHhhCCC----CcEEecceEEEEEeeCC-----eeEEEecCC-C--EEeecEEEecCCCchh
Q 021278 10 CVRRKLLLETLAKELPS----GTIRYSSQVVSIEESGH-----FKLLHLADG-T--ILKTKVLIGCDGVNSI 69 (315)
Q Consensus 10 ~i~R~~L~~~L~~~~~~----~~i~~~~~v~~~~~~~~-----~~~v~~~~g-~--~~~ad~vVgADG~~S~ 69 (315)
-.++.++.+.|.+-+.. -.|+++++|++++..++ .++|+.+++ . +..+|.||.|.|.++.
T Consensus 80 f~~~~~v~~Yl~~Ya~~f~L~~~I~fnt~V~~v~~~~d~~~~~~W~V~~~~~g~~~~~~fD~VvvatG~~~~ 151 (531)
T PF00743_consen 80 FPSHSEVLEYLESYAEHFGLRKHIRFNTEVVSVERDPDFSATGKWEVTTENDGKEETEEFDAVVVATGHFSK 151 (531)
T ss_dssp SEBHHHHHHHHHHHHHHTTGGGGEETSEEEEEEEEETTTT-ETEEEEEETTTTEEEEEEECEEEEEE-SSSC
T ss_pred CCCHHHHHHHHHHHHhhhCCcceEEEccEEeEeeeccccCCCceEEEEeecCCeEEEEEeCeEEEcCCCcCC
Confidence 36888999999886532 58999999999998653 488887654 2 4568999999999874
No 181
>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=79.91 E-value=6.2 Score=36.56 Aligned_cols=45 Identities=11% Similarity=0.166 Sum_probs=36.4
Q ss_pred CCCcEEecceEEEEEeeCCeeEEEecCCCEEeecEEEecCCCchhh
Q 021278 25 PSGTIRYSSQVVSIEESGHFKLLHLADGTILKTKVLIGCDGVNSIV 70 (315)
Q Consensus 25 ~~~~i~~~~~v~~~~~~~~~~~v~~~~g~~~~ad~vVgADG~~S~v 70 (315)
.+++++.+++|++++.+++++.+. .+++++.+|.||-|-|....+
T Consensus 211 ~GI~i~~~~~V~~i~~~~~~v~v~-~~g~~i~~D~viva~G~~p~~ 255 (438)
T PRK07251 211 DGITFLLNAHTTEVKNDGDQVLVV-TEDETYRFDALLYATGRKPNT 255 (438)
T ss_pred cCCEEEcCCEEEEEEecCCEEEEE-ECCeEEEcCEEEEeeCCCCCc
Confidence 369999999999998766666554 356789999999999987654
No 182
>PRK14727 putative mercuric reductase; Provisional
Probab=79.11 E-value=7.5 Score=36.57 Aligned_cols=46 Identities=15% Similarity=0.138 Sum_probs=37.6
Q ss_pred CCCcEEecceEEEEEeeCCeeEEEecCCCEEeecEEEecCCCchhhh
Q 021278 25 PSGTIRYSSQVVSIEESGHFKLLHLADGTILKTKVLIGCDGVNSIVA 71 (315)
Q Consensus 25 ~~~~i~~~~~v~~~~~~~~~~~v~~~~g~~~~ad~vVgADG~~S~vr 71 (315)
.+++++.+++|.+++.+++++.|...++ ++.+|.||-|-|....+.
T Consensus 241 ~GV~i~~~~~V~~i~~~~~~~~v~~~~g-~i~aD~VlvA~G~~pn~~ 286 (479)
T PRK14727 241 EGIEVLNNTQASLVEHDDNGFVLTTGHG-ELRAEKLLISTGRHANTH 286 (479)
T ss_pred CCCEEEcCcEEEEEEEeCCEEEEEEcCC-eEEeCEEEEccCCCCCcc
Confidence 3699999999999987777777766554 689999999999987654
No 183
>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]
Probab=79.01 E-value=6.3 Score=36.70 Aligned_cols=58 Identities=17% Similarity=0.130 Sum_probs=40.5
Q ss_pred eHHHHHHHHHhhCCCCcEEecceEEEEEeeC--CeeEEEecCCCE--EeecEEEecCCCchh
Q 021278 12 RRKLLLETLAKELPSGTIRYSSQVVSIEESG--HFKLLHLADGTI--LKTKVLIGCDGVNSI 69 (315)
Q Consensus 12 ~R~~L~~~L~~~~~~~~i~~~~~v~~~~~~~--~~~~v~~~~g~~--~~ad~vVgADG~~S~ 69 (315)
.+..+...+.+....-.|.++++|..+..++ +.++|+.+++.+ ++||.||-|.|..|.
T Consensus 84 ~~~y~~~~~~~y~~~~~i~~~~~v~~~~~~~~~~~w~V~~~~~~~~~~~a~~vV~ATG~~~~ 145 (443)
T COG2072 84 IKDYIKDYLEKYGLRFQIRFNTRVEVADWDEDTKRWTVTTSDGGTGELTADFVVVATGHLSE 145 (443)
T ss_pred HHHHHHHHHHHcCceeEEEcccceEEEEecCCCCeEEEEEcCCCeeeEecCEEEEeecCCCC
Confidence 3555555555543445677777776666654 469999998865 569999999999653
No 184
>PRK06481 fumarate reductase flavoprotein subunit; Validated
Probab=78.69 E-value=7.8 Score=36.73 Aligned_cols=56 Identities=14% Similarity=0.149 Sum_probs=40.0
Q ss_pred HHHHHHHhhC--CCCcEEecceEEEEEeeCCe---eEEEecCCC--EEeecEEEecCCCchhh
Q 021278 15 LLLETLAKEL--PSGTIRYSSQVVSIEESGHF---KLLHLADGT--ILKTKVLIGCDGVNSIV 70 (315)
Q Consensus 15 ~L~~~L~~~~--~~~~i~~~~~v~~~~~~~~~---~~v~~~~g~--~~~ad~vVgADG~~S~v 70 (315)
.+.+.|.+.+ .+++++++++|+++..+++. +.+...+++ +++||.||.|.|-.+.-
T Consensus 191 ~l~~~L~~~~~~~gv~i~~~t~v~~l~~~~g~V~Gv~~~~~~g~~~~i~a~~VVlAtGG~~~n 253 (506)
T PRK06481 191 YLVDGLLKNVQERKIPLFVNADVTKITEKDGKVTGVKVKINGKETKTISSKAVVVTTGGFGAN 253 (506)
T ss_pred HHHHHHHHHHHHcCCeEEeCCeeEEEEecCCEEEEEEEEeCCCeEEEEecCeEEEeCCCcccC
Confidence 3556666554 45999999999999876554 333334443 68999999999977654
No 185
>PRK06467 dihydrolipoamide dehydrogenase; Reviewed
Probab=78.41 E-value=6.9 Score=36.71 Aligned_cols=45 Identities=9% Similarity=0.003 Sum_probs=37.2
Q ss_pred CcEEecceEEEEEeeCCeeEEEecCC----CEEeecEEEecCCCchhhh
Q 021278 27 GTIRYSSQVVSIEESGHFKLLHLADG----TILKTKVLIGCDGVNSIVA 71 (315)
Q Consensus 27 ~~i~~~~~v~~~~~~~~~~~v~~~~g----~~~~ad~vVgADG~~S~vr 71 (315)
++++.+++|++++.+++++.+.+.++ .++++|.||-|-|....+.
T Consensus 229 v~i~~~~~v~~i~~~~~~~~v~~~~~~~~~~~i~~D~vi~a~G~~pn~~ 277 (471)
T PRK06467 229 FNIMLETKVTAVEAKEDGIYVTMEGKKAPAEPQRYDAVLVAVGRVPNGK 277 (471)
T ss_pred eEEEcCCEEEEEEEcCCEEEEEEEeCCCcceEEEeCEEEEeecccccCC
Confidence 89999999999987777777776543 3699999999999987664
No 186
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=77.91 E-value=8.5 Score=35.65 Aligned_cols=54 Identities=17% Similarity=0.171 Sum_probs=36.9
Q ss_pred HHHHHHHhhC--CCCcEEecceEEEEEeeCCeeEEEecCCCEEeecEEEecCCCchh
Q 021278 15 LLLETLAKEL--PSGTIRYSSQVVSIEESGHFKLLHLADGTILKTKVLIGCDGVNSI 69 (315)
Q Consensus 15 ~L~~~L~~~~--~~~~i~~~~~v~~~~~~~~~~~v~~~~g~~~~ad~vVgADG~~S~ 69 (315)
.+.+.|.+.+ .+++++.++++.+++.++....+.. ++.++.+|+||.|-|....
T Consensus 192 ~~~~~l~~~l~~~gI~v~~~~~v~~i~~~~~~~~v~~-~~~~i~~d~vi~a~G~~p~ 247 (444)
T PRK09564 192 EITDVMEEELRENGVELHLNEFVKSLIGEDKVEGVVT-DKGEYEADVVIVATGVKPN 247 (444)
T ss_pred HHHHHHHHHHHHCCCEEEcCCEEEEEecCCcEEEEEe-CCCEEEcCEEEECcCCCcC
Confidence 3344444433 3599999999999965433233443 4558999999999998643
No 187
>PRK05945 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=77.80 E-value=8.9 Score=37.03 Aligned_cols=57 Identities=23% Similarity=0.274 Sum_probs=41.4
Q ss_pred HHHHHHHHhhC--CCCcEEecceEEEEEeeCCee---E-EEecCCC--EEeecEEEecCCCchhh
Q 021278 14 KLLLETLAKEL--PSGTIRYSSQVVSIEESGHFK---L-LHLADGT--ILKTKVLIGCDGVNSIV 70 (315)
Q Consensus 14 ~~L~~~L~~~~--~~~~i~~~~~v~~~~~~~~~~---~-v~~~~g~--~~~ad~vVgADG~~S~v 70 (315)
..+.+.|.+++ .+++++.++.++++..+++.+ . +...+++ .+.|+.||.|+|..+.+
T Consensus 135 ~~i~~~L~~~~~~~gi~i~~~t~v~~L~~~~g~v~Gv~~~~~~~g~~~~i~AkaVVlATGG~~~~ 199 (575)
T PRK05945 135 HAILHELVNNLRRYGVTIYDEWYVMRLILEDNQAKGVVMYHIADGRLEVVRAKAVMFATGGYGRV 199 (575)
T ss_pred HHHHHHHHHHHhhCCCEEEeCcEEEEEEEECCEEEEEEEEEcCCCeEEEEECCEEEECCCCCcCC
Confidence 34666666655 459999999999998765542 2 2334564 68999999999998864
No 188
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=77.76 E-value=8 Score=35.89 Aligned_cols=42 Identities=12% Similarity=0.180 Sum_probs=34.4
Q ss_pred CCCcEEecceEEEEEeeCCeeEEEecCCCEEeecEEEecCCCchhh
Q 021278 25 PSGTIRYSSQVVSIEESGHFKLLHLADGTILKTKVLIGCDGVNSIV 70 (315)
Q Consensus 25 ~~~~i~~~~~v~~~~~~~~~~~v~~~~g~~~~ad~vVgADG~~S~v 70 (315)
.+++++.++++.+++. + .|++++|+++++|+||-|-|....+
T Consensus 202 ~gI~i~~~~~v~~i~~--~--~v~~~~g~~~~~D~vl~a~G~~pn~ 243 (438)
T PRK13512 202 REIPYRLNEEIDAING--N--EVTFKSGKVEHYDMIIEGVGTHPNS 243 (438)
T ss_pred cCCEEEECCeEEEEeC--C--EEEECCCCEEEeCEEEECcCCCcCh
Confidence 3699999999999963 2 4677888899999999999987543
No 189
>PRK06175 L-aspartate oxidase; Provisional
Probab=77.59 E-value=8.3 Score=35.75 Aligned_cols=55 Identities=24% Similarity=0.081 Sum_probs=39.5
Q ss_pred HHHHHHHhhC---CCCcEEecceEEEEEeeCCee-EEE-ecCCC--EEeecEEEecCCCchh
Q 021278 15 LLLETLAKEL---PSGTIRYSSQVVSIEESGHFK-LLH-LADGT--ILKTKVLIGCDGVNSI 69 (315)
Q Consensus 15 ~L~~~L~~~~---~~~~i~~~~~v~~~~~~~~~~-~v~-~~~g~--~~~ad~vVgADG~~S~ 69 (315)
.+.+.|.+++ ++++|+++++++++..+++.+ .|. ..++. ++.|+-||.|.|..+.
T Consensus 129 ~l~~~L~~~~~~~~gV~i~~~t~v~~Li~~~~~v~Gv~~~~~g~~~~i~Ak~VILAtGG~~~ 190 (433)
T PRK06175 129 KVEKILLKKVKKRKNITIIENCYLVDIIENDNTCIGAICLKDNKQINIYSKVTILATGGIGG 190 (433)
T ss_pred HHHHHHHHHHHhcCCCEEEECcEeeeeEecCCEEEEEEEEECCcEEEEEcCeEEEccCcccc
Confidence 4666666554 369999999999998765542 222 23444 6899999999998764
No 190
>KOG1399 consensus Flavin-containing monooxygenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=75.20 E-value=8.6 Score=35.78 Aligned_cols=63 Identities=14% Similarity=0.136 Sum_probs=50.8
Q ss_pred CccceeeeHHHHHHHHHhhCCC----CcEEecceEEEEEeeC-CeeEEEecCC----CEEeecEEEecCCCc
Q 021278 5 EHEMRCVRRKLLLETLAKELPS----GTIRYSSQVVSIEESG-HFKLLHLADG----TILKTKVLIGCDGVN 67 (315)
Q Consensus 5 ~~~~~~i~R~~L~~~L~~~~~~----~~i~~~~~v~~~~~~~-~~~~v~~~~g----~~~~ad~vVgADG~~ 67 (315)
...-+..++.++.+.|.+-+.. ..|+++++|..++... +.|.|...++ ++.-+|.||.|.|-+
T Consensus 81 ~~~~~~p~~~e~~~YL~~yA~~F~l~~~i~f~~~v~~v~~~~~gkW~V~~~~~~~~~~~~ifd~VvVctGh~ 152 (448)
T KOG1399|consen 81 RDPRYFPSHREVLEYLRDYAKHFDLLKMINFNTEVVRVDSIDKGKWRVTTKDNGTQIEEEIFDAVVVCTGHY 152 (448)
T ss_pred cCcccCCCHHHHHHHHHHHHHhcChhhheEecccEEEEeeccCCceeEEEecCCcceeEEEeeEEEEcccCc
Confidence 3455567788999999887744 5799999999999887 6788888765 366789999999999
No 191
>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B.
Probab=74.67 E-value=6.5 Score=35.17 Aligned_cols=67 Identities=19% Similarity=0.315 Sum_probs=42.4
Q ss_pred ceeeeHHHHHHHHHhhCCC--CcEEecceEEEEEeeCC----eeEEEec----CCCEEeecEEEecCCCchhhhhhh
Q 021278 8 MRCVRRKLLLETLAKELPS--GTIRYSSQVVSIEESGH----FKLLHLA----DGTILKTKVLIGCDGVNSIVAKWL 74 (315)
Q Consensus 8 ~~~i~R~~L~~~L~~~~~~--~~i~~~~~v~~~~~~~~----~~~v~~~----~g~~~~ad~vVgADG~~S~vr~~l 74 (315)
...+.|.++.+.|.-.+.. ..++++++|++|+..++ .++|+.. ++.++.|+-||-|-|..-.+...+
T Consensus 89 ~~~p~R~ef~dYl~Wva~~~~~~v~~~~~V~~I~~~~~~~~~~~~V~~~~~~g~~~~~~ar~vVla~G~~P~iP~~~ 165 (341)
T PF13434_consen 89 YFFPSRREFNDYLRWVAEQLDNQVRYGSEVTSIEPDDDGDEDLFRVTTRDSDGDGETYRARNVVLATGGQPRIPEWF 165 (341)
T ss_dssp -SS-BHHHHHHHHHHHHCCGTTTEEESEEEEEEEEEEETTEEEEEEEEEETTS-EEEEEESEEEE----EE---GGG
T ss_pred CCCCCHHHHHHHHHHHHHhCCCceEECCEEEEEEEecCCCccEEEEEEeecCCCeeEEEeCeEEECcCCCCCCCcch
Confidence 3457888888887765544 45999999999997654 3777774 235899999999999554444444
No 192
>PRK06292 dihydrolipoamide dehydrogenase; Validated
Probab=74.11 E-value=13 Score=34.59 Aligned_cols=56 Identities=18% Similarity=0.181 Sum_probs=39.0
Q ss_pred HHHHHHhhCCC-CcEEecceEEEEEeeCC-eeEEEecCC--CEEeecEEEecCCCchhhh
Q 021278 16 LLETLAKELPS-GTIRYSSQVVSIEESGH-FKLLHLADG--TILKTKVLIGCDGVNSIVA 71 (315)
Q Consensus 16 L~~~L~~~~~~-~~i~~~~~v~~~~~~~~-~~~v~~~~g--~~~~ad~vVgADG~~S~vr 71 (315)
+.+.+.+.+.. +++++++++.+++.+++ ++++.+.++ .++++|+||.|-|....+.
T Consensus 212 ~~~~~~~~l~~~I~i~~~~~v~~i~~~~~~~v~~~~~~~~~~~i~~D~vi~a~G~~p~~~ 271 (460)
T PRK06292 212 VSKQAQKILSKEFKIKLGAKVTSVEKSGDEKVEELEKGGKTETIEADYVLVATGRRPNTD 271 (460)
T ss_pred HHHHHHHHHhhccEEEcCCEEEEEEEcCCceEEEEEcCCceEEEEeCEEEEccCCccCCC
Confidence 33444443322 89999999999987654 455545444 4799999999999876554
No 193
>PRK13748 putative mercuric reductase; Provisional
Probab=73.95 E-value=13 Score=35.72 Aligned_cols=45 Identities=13% Similarity=0.090 Sum_probs=36.4
Q ss_pred CCCcEEecceEEEEEeeCCeeEEEecCCCEEeecEEEecCCCchhh
Q 021278 25 PSGTIRYSSQVVSIEESGHFKLLHLADGTILKTKVLIGCDGVNSIV 70 (315)
Q Consensus 25 ~~~~i~~~~~v~~~~~~~~~~~v~~~~g~~~~ad~vVgADG~~S~v 70 (315)
.+++++.++++.+++.+++.+.+...++ ++.+|.||-|-|....+
T Consensus 323 ~gI~i~~~~~v~~i~~~~~~~~v~~~~~-~i~~D~vi~a~G~~pn~ 367 (561)
T PRK13748 323 EGIEVLEHTQASQVAHVDGEFVLTTGHG-ELRADKLLVATGRAPNT 367 (561)
T ss_pred CCCEEEcCCEEEEEEecCCEEEEEecCC-eEEeCEEEEccCCCcCC
Confidence 3699999999999987666666666554 69999999999987655
No 194
>COG1251 NirB NAD(P)H-nitrite reductase [Energy production and conversion]
Probab=73.91 E-value=2.3 Score=41.42 Aligned_cols=52 Identities=17% Similarity=0.227 Sum_probs=40.3
Q ss_pred CCcEEecceEEEEEeeCCeeEEEecCCCEEeecEEEecCCCc--hhhhhhhCCC
Q 021278 26 SGTIRYSSQVVSIEESGHFKLLHLADGTILKTKVLIGCDGVN--SIVAKWLGFK 77 (315)
Q Consensus 26 ~~~i~~~~~v~~~~~~~~~~~v~~~~g~~~~ad~vVgADG~~--S~vr~~l~~~ 77 (315)
+++++.++.+..+..++.-..|.|+||..+.||+||-|+|.+ ..+.+..|+.
T Consensus 201 Gi~~~l~~~t~ei~g~~~~~~vr~~DG~~i~ad~VV~a~GIrPn~ela~~aGla 254 (793)
T COG1251 201 GIKVLLEKNTEEIVGEDKVEGVRFADGTEIPADLVVMAVGIRPNDELAKEAGLA 254 (793)
T ss_pred cceeecccchhhhhcCcceeeEeecCCCcccceeEEEecccccccHhHHhcCcC
Confidence 488999888888776554577999999999999999999975 3344554443
No 195
>PRK08401 L-aspartate oxidase; Provisional
Probab=73.71 E-value=11 Score=35.23 Aligned_cols=57 Identities=19% Similarity=0.114 Sum_probs=41.1
Q ss_pred HHHHHHHHhhC--CCCcEEecceEEEEEeeCCeeE-EEecCCCEEeecEEEecCCCchhhhh
Q 021278 14 KLLLETLAKEL--PSGTIRYSSQVVSIEESGHFKL-LHLADGTILKTKVLIGCDGVNSIVAK 72 (315)
Q Consensus 14 ~~L~~~L~~~~--~~~~i~~~~~v~~~~~~~~~~~-v~~~~g~~~~ad~vVgADG~~S~vr~ 72 (315)
..+.+.|.+.+ .++++..+ .++.+..+++.+. |.. ++..++++.||.|.|..|....
T Consensus 120 ~~i~~~L~~~~~~~gv~i~~~-~v~~l~~~~g~v~Gv~~-~g~~i~a~~VVLATGG~~~~~~ 179 (466)
T PRK08401 120 KHIIKILYKHARELGVNFIRG-FAEELAIKNGKAYGVFL-DGELLKFDATVIATGGFSGLFK 179 (466)
T ss_pred HHHHHHHHHHHHhcCCEEEEe-EeEEEEeeCCEEEEEEE-CCEEEEeCeEEECCCcCcCCCC
Confidence 35677777665 35888875 7888876555543 333 5678999999999999998654
No 196
>PRK07121 hypothetical protein; Validated
Probab=73.65 E-value=12 Score=35.34 Aligned_cols=55 Identities=18% Similarity=0.242 Sum_probs=39.8
Q ss_pred HHHHHHHhhC--CCCcEEecceEEEEEeeCC-ee-EEEec-CCC--EEee-cEEEecCCCchh
Q 021278 15 LLLETLAKEL--PSGTIRYSSQVVSIEESGH-FK-LLHLA-DGT--ILKT-KVLIGCDGVNSI 69 (315)
Q Consensus 15 ~L~~~L~~~~--~~~~i~~~~~v~~~~~~~~-~~-~v~~~-~g~--~~~a-d~vVgADG~~S~ 69 (315)
.+.+.|.+++ .+++|+++++++++..+++ .+ .|... +++ +++| +.||.|.|-.+.
T Consensus 178 ~~~~~L~~~~~~~gv~i~~~~~v~~l~~~~~g~v~Gv~~~~~~~~~~i~a~k~VVlAtGg~~~ 240 (492)
T PRK07121 178 MLMDPLAKRAAALGVQIRYDTRATRLIVDDDGRVVGVEARRYGETVAIRARKGVVLAAGGFAM 240 (492)
T ss_pred HHHHHHHHHHHhCCCEEEeCCEEEEEEECCCCCEEEEEEEeCCcEEEEEeCCEEEECCCCcCc
Confidence 4666776665 3599999999999987643 32 24333 333 6889 999999998875
No 197
>PRK05976 dihydrolipoamide dehydrogenase; Validated
Probab=73.42 E-value=14 Score=34.71 Aligned_cols=46 Identities=9% Similarity=0.061 Sum_probs=34.7
Q ss_pred CCCcEEecceEEEEEee-CCee-EEEecCCC--EEeecEEEecCCCchhh
Q 021278 25 PSGTIRYSSQVVSIEES-GHFK-LLHLADGT--ILKTKVLIGCDGVNSIV 70 (315)
Q Consensus 25 ~~~~i~~~~~v~~~~~~-~~~~-~v~~~~g~--~~~ad~vVgADG~~S~v 70 (315)
.+++++.+++|.+++.. ++++ .+...+|+ ++.+|+||.|-|....+
T Consensus 234 ~gI~i~~~~~v~~i~~~~~~~~~~~~~~~g~~~~i~~D~vi~a~G~~p~~ 283 (472)
T PRK05976 234 LGVRVVTGAKVLGLTLKKDGGVLIVAEHNGEEKTLEADKVLVSVGRRPNT 283 (472)
T ss_pred cCCEEEeCcEEEEEEEecCCCEEEEEEeCCceEEEEeCEEEEeeCCccCC
Confidence 36999999999999752 3443 34455664 79999999999997654
No 198
>PRK06069 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=73.10 E-value=11 Score=36.53 Aligned_cols=57 Identities=16% Similarity=0.085 Sum_probs=40.8
Q ss_pred HHHHHHhhC---CCCcEEecceEEEEEeeCCeeE-E---EecCCC--EEeecEEEecCCCchhhhh
Q 021278 16 LLETLAKEL---PSGTIRYSSQVVSIEESGHFKL-L---HLADGT--ILKTKVLIGCDGVNSIVAK 72 (315)
Q Consensus 16 L~~~L~~~~---~~~~i~~~~~v~~~~~~~~~~~-v---~~~~g~--~~~ad~vVgADG~~S~vr~ 72 (315)
+.+.|.+++ .+++++.++.++++..+++.+. | ...+++ .+.|+.||.|+|-.+.+..
T Consensus 139 i~~~L~~~~~~~~gv~i~~~~~v~~Li~~~g~v~Gv~~~~~~~g~~~~i~Ak~VIlATGG~~~~~~ 204 (577)
T PRK06069 139 IMHTLYSRALRFDNIHFYDEHFVTSLIVENGVFKGVTAIDLKRGEFKVFQAKAGIIATGGAGRLYG 204 (577)
T ss_pred HHHHHHHHHHhcCCCEEEECCEEEEEEEECCEEEEEEEEEcCCCeEEEEECCcEEEcCchhcccCC
Confidence 555666543 4689999999999987655431 2 234564 6899999999999876543
No 199
>PF01946 Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K.
Probab=71.81 E-value=17 Score=30.22 Aligned_cols=66 Identities=17% Similarity=0.178 Sum_probs=45.5
Q ss_pred cceeeeHHHHHHHHHhhC--CCCcEEecceEEEEEeeC-Cee---EEEec---------CCCEEeecEEEecCCCchhhh
Q 021278 7 EMRCVRRKLLLETLAKEL--PSGTIRYSSQVVSIEESG-HFK---LLHLA---------DGTILKTKVLIGCDGVNSIVA 71 (315)
Q Consensus 7 ~~~~i~R~~L~~~L~~~~--~~~~i~~~~~v~~~~~~~-~~~---~v~~~---------~g~~~~ad~vVgADG~~S~vr 71 (315)
..+..+-..+...|..++ ++++|+..+.|.++-..+ +++ .+... |.-+++|++||.|.|-.+.+-
T Consensus 89 g~~v~d~~~~~s~L~s~a~~aGakifn~~~vEDvi~r~~~rV~GvViNWt~V~~~glHvDPl~i~ak~ViDaTGHda~v~ 168 (230)
T PF01946_consen 89 GYYVADSVEFTSTLASKAIDAGAKIFNLTSVEDVIVREDDRVAGVVINWTPVEMAGLHVDPLTIRAKVVIDATGHDAEVV 168 (230)
T ss_dssp EEEES-HHHHHHHHHHHHHTTTEEEEETEEEEEEEEECSCEEEEEEEEEHHHHTT--T-B-EEEEESEEEE---SSSSST
T ss_pred eEEEEcHHHHHHHHHHHHhcCCCEEEeeeeeeeeEEEcCCeEEEEEEEehHHhHhhcCCCcceEEEeEEEeCCCCchHHH
Confidence 466778888888888876 679999999999998877 442 22221 234899999999999877553
Q ss_pred h
Q 021278 72 K 72 (315)
Q Consensus 72 ~ 72 (315)
+
T Consensus 169 ~ 169 (230)
T PF01946_consen 169 R 169 (230)
T ss_dssp S
T ss_pred H
Confidence 3
No 200
>PRK06134 putative FAD-binding dehydrogenase; Reviewed
Probab=71.70 E-value=15 Score=35.55 Aligned_cols=54 Identities=15% Similarity=0.021 Sum_probs=37.7
Q ss_pred HHHHHHhhC--CCCcEEecceEEEEEeeCCee-EEEe--cCCC-EEee-cEEEecCCCchh
Q 021278 16 LLETLAKEL--PSGTIRYSSQVVSIEESGHFK-LLHL--ADGT-ILKT-KVLIGCDGVNSI 69 (315)
Q Consensus 16 L~~~L~~~~--~~~~i~~~~~v~~~~~~~~~~-~v~~--~~g~-~~~a-d~vVgADG~~S~ 69 (315)
|.+.|.+.+ .+++|+++++|+++..+++.+ .|.. .++. +++| +.||-|.|..+.
T Consensus 219 l~~~L~~~a~~~Gv~i~~~t~v~~l~~~~g~v~GV~~~~~~~~~~i~a~k~VVlAtGg~~~ 279 (581)
T PRK06134 219 LVARLLKSAEDLGVRIWESAPARELLREDGRVAGAVVETPGGLQEIRARKGVVLAAGGFPH 279 (581)
T ss_pred HHHHHHHHHHhCCCEEEcCCEEEEEEEeCCEEEEEEEEECCcEEEEEeCCEEEEcCCCccc
Confidence 455666655 459999999999988765543 2333 3333 6889 888888887774
No 201
>PF09465 LBR_tudor: Lamin-B receptor of TUDOR domain; InterPro: IPR019023 The Lamin-B receptor is a chromatin and lamin binding protein in the inner nuclear membrane. It is one of the integral inner nuclear envelope membrane proteins responsible for targeting nuclear membranes to chromatin, being a downstream effector of Ran, a small Ras-like nuclear GTPase which regulates NE assembly. Lamin-B receptor interacts with importin beta, a Ran-binding protein, thereby directly contributing to the fusion of membrane vesicles and the formation of the nuclear envelope []. ; PDB: 2L8D_A 2DIG_A.
Probab=71.13 E-value=12 Score=23.38 Aligned_cols=31 Identities=26% Similarity=0.428 Sum_probs=25.7
Q ss_pred CCCcEEecceEEEEEeeCCeeEEEecCCCEE
Q 021278 25 PSGTIRYSSQVVSIEESGHFKLLHLADGTIL 55 (315)
Q Consensus 25 ~~~~i~~~~~v~~~~~~~~~~~v~~~~g~~~ 55 (315)
|+..+.+..+|.+++...+...|.++||++.
T Consensus 17 P~s~lYYe~kV~~~d~~~~~y~V~Y~DGtel 47 (55)
T PF09465_consen 17 PGSSLYYEGKVLSYDSKSDRYTVLYEDGTEL 47 (55)
T ss_dssp TTTS-EEEEEEEEEETTTTEEEEEETTS-EE
T ss_pred CCCCcEEEEEEEEecccCceEEEEEcCCCEE
Confidence 6778889999999999899899999999864
No 202
>PTZ00058 glutathione reductase; Provisional
Probab=70.81 E-value=18 Score=34.89 Aligned_cols=46 Identities=22% Similarity=0.179 Sum_probs=36.0
Q ss_pred CCCcEEecceEEEEEeeCC-eeEEEecCC-CEEeecEEEecCCCchhh
Q 021278 25 PSGTIRYSSQVVSIEESGH-FKLLHLADG-TILKTKVLIGCDGVNSIV 70 (315)
Q Consensus 25 ~~~~i~~~~~v~~~~~~~~-~~~v~~~~g-~~~~ad~vVgADG~~S~v 70 (315)
.+++++.++++.+++.+++ ++.+.+.++ +++++|.||-|-|....+
T Consensus 291 ~GV~i~~~~~V~~I~~~~~~~v~v~~~~~~~~i~aD~VlvA~Gr~Pn~ 338 (561)
T PTZ00058 291 NNINIITHANVEEIEKVKEKNLTIYLSDGRKYEHFDYVIYCVGRSPNT 338 (561)
T ss_pred CCCEEEeCCEEEEEEecCCCcEEEEECCCCEEEECCEEEECcCCCCCc
Confidence 3699999999999987644 466666554 479999999999987554
No 203
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=70.54 E-value=10 Score=34.66 Aligned_cols=42 Identities=12% Similarity=0.139 Sum_probs=35.3
Q ss_pred CCCcEEecceEEEEEeeCCeeEEEecCCCEEeecEEEecCCCch
Q 021278 25 PSGTIRYSSQVVSIEESGHFKLLHLADGTILKTKVLIGCDGVNS 68 (315)
Q Consensus 25 ~~~~i~~~~~v~~~~~~~~~~~v~~~~g~~~~ad~vVgADG~~S 68 (315)
.+++++.+++|+.++.+.. .|.+.+|.++.+|.||-|.|...
T Consensus 71 ~~i~~~~g~~V~~id~~~~--~v~~~~g~~~~yd~LViATGs~~ 112 (396)
T PRK09754 71 NNVHLHSGVTIKTLGRDTR--ELVLTNGESWHWDQLFIATGAAA 112 (396)
T ss_pred CCCEEEcCCEEEEEECCCC--EEEECCCCEEEcCEEEEccCCCC
Confidence 3589999999999977654 46678889999999999999985
No 204
>COG3486 IucD Lysine/ornithine N-monooxygenase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=70.47 E-value=13 Score=33.92 Aligned_cols=50 Identities=26% Similarity=0.292 Sum_probs=39.2
Q ss_pred CCCcEEecceEEEEEeeCCe-eEEEecCC-----CEEeecEEEecCCCchhhhhhh
Q 021278 25 PSGTIRYSSQVVSIEESGHF-KLLHLADG-----TILKTKVLIGCDGVNSIVAKWL 74 (315)
Q Consensus 25 ~~~~i~~~~~v~~~~~~~~~-~~v~~~~g-----~~~~ad~vVgADG~~S~vr~~l 74 (315)
+.+.++.++.|.+++..+++ +.+.+... ++++.|.||-|.|.+=.+-..+
T Consensus 291 ~~v~l~~~~ev~~~~~~G~g~~~l~~~~~~~~~~~t~~~D~vIlATGY~~~~P~fL 346 (436)
T COG3486 291 PDVRLLSLSEVQSVEPAGDGRYRLTLRHHETGELETVETDAVILATGYRRAVPSFL 346 (436)
T ss_pred CCeeeccccceeeeecCCCceEEEEEeeccCCCceEEEeeEEEEecccccCCchhh
Confidence 55899999999999998877 77776533 4889999999999984444333
No 205
>COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=70.07 E-value=18 Score=31.85 Aligned_cols=56 Identities=20% Similarity=0.198 Sum_probs=41.9
Q ss_pred eeHHHHHHHHHhhC--CCCcEEecceEEEEEeeCCeeEEEecCCCEEeecEEEecCCCch
Q 021278 11 VRRKLLLETLAKEL--PSGTIRYSSQVVSIEESGHFKLLHLADGTILKTKVLIGCDGVNS 68 (315)
Q Consensus 11 i~R~~L~~~L~~~~--~~~~i~~~~~v~~~~~~~~~~~v~~~~g~~~~ad~vVgADG~~S 68 (315)
+.=..|.+.+.+.+ .++++.. ..|.+++..++...|...+++ ++|+.||-|.|...
T Consensus 58 ~~g~~L~~~~~~~a~~~~~~~~~-~~v~~v~~~~~~F~v~t~~~~-~~ak~vIiAtG~~~ 115 (305)
T COG0492 58 ILGPELMEQMKEQAEKFGVEIVE-DEVEKVELEGGPFKVKTDKGT-YEAKAVIIATGAGA 115 (305)
T ss_pred CchHHHHHHHHHHHhhcCeEEEE-EEEEEEeecCceEEEEECCCe-EEEeEEEECcCCcc
Confidence 44566777777776 5577776 677777776655667777777 99999999999974
No 206
>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]
Probab=69.45 E-value=13 Score=34.10 Aligned_cols=44 Identities=20% Similarity=0.299 Sum_probs=35.9
Q ss_pred CCcEEecceEEEEEeeCCeeEEEecCCC-EEeecEEEecCCCc-hhhhhh
Q 021278 26 SGTIRYSSQVVSIEESGHFKLLHLADGT-ILKTKVLIGCDGVN-SIVAKW 73 (315)
Q Consensus 26 ~~~i~~~~~v~~~~~~~~~~~v~~~~g~-~~~ad~vVgADG~~-S~vr~~ 73 (315)
+++|+.++.|++++.+. |++++|. +|.++.+|=|-|.. |.+-+.
T Consensus 223 GV~v~l~~~Vt~v~~~~----v~~~~g~~~I~~~tvvWaaGv~a~~~~~~ 268 (405)
T COG1252 223 GVEVLLGTPVTEVTPDG----VTLKDGEEEIPADTVVWAAGVRASPLLKD 268 (405)
T ss_pred CCEEEcCCceEEECCCc----EEEccCCeeEecCEEEEcCCCcCChhhhh
Confidence 69999999999997765 7788887 59999999999964 444444
No 207
>KOG1335 consensus Dihydrolipoamide dehydrogenase [Energy production and conversion]
Probab=68.80 E-value=19 Score=32.58 Aligned_cols=53 Identities=19% Similarity=0.266 Sum_probs=40.5
Q ss_pred HHHHHHHhhCCCCcEEecceEEEEEeeCC-eeEEEecC---C--CEEeecEEEecCCCchh
Q 021278 15 LLLETLAKELPSGTIRYSSQVVSIEESGH-FKLLHLAD---G--TILKTKVLIGCDGVNSI 69 (315)
Q Consensus 15 ~L~~~L~~~~~~~~i~~~~~v~~~~~~~~-~~~v~~~~---g--~~~~ad~vVgADG~~S~ 69 (315)
.+.+.|.. .+.+++.+++|.+.+.+++ .+.|++.+ + ++++||.+..|-|++--
T Consensus 257 ~~qr~L~k--QgikF~l~tkv~~a~~~~dg~v~i~ve~ak~~k~~tle~DvlLVsiGRrP~ 315 (506)
T KOG1335|consen 257 AFQRVLQK--QGIKFKLGTKVTSATRNGDGPVEIEVENAKTGKKETLECDVLLVSIGRRPF 315 (506)
T ss_pred HHHHHHHh--cCceeEeccEEEEeeccCCCceEEEEEecCCCceeEEEeeEEEEEccCccc
Confidence 34444444 5799999999999999988 46666654 3 37999999999998643
No 208
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=66.86 E-value=19 Score=30.94 Aligned_cols=51 Identities=24% Similarity=0.257 Sum_probs=35.1
Q ss_pred HHHHHHhhCCCCcEEecceEEEEEeeCCeeEEEec---CC--CEEeecEEEecCCCc
Q 021278 16 LLETLAKELPSGTIRYSSQVVSIEESGHFKLLHLA---DG--TILKTKVLIGCDGVN 67 (315)
Q Consensus 16 L~~~L~~~~~~~~i~~~~~v~~~~~~~~~~~v~~~---~g--~~~~ad~vVgADG~~ 67 (315)
+.+.|.+ ..++++++++++.+++.++....+++. ++ .++.+|+||-|.|..
T Consensus 182 ~~~~l~~-~~gv~~~~~~~v~~i~~~~~~~~v~~~~~~~g~~~~i~~D~vi~a~G~~ 237 (300)
T TIGR01292 182 LLDRLRK-NPNIEFLWNSTVKEIVGDNKVEGVKIKNTVTGEEEELKVDGVFIAIGHE 237 (300)
T ss_pred HHHHHHh-CCCeEEEeccEEEEEEccCcEEEEEEEecCCCceEEEEccEEEEeeCCC
Confidence 3444442 247999999999999865532334443 23 479999999999965
No 209
>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein. Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.
Probab=66.61 E-value=9.9 Score=34.12 Aligned_cols=41 Identities=17% Similarity=0.118 Sum_probs=33.3
Q ss_pred CCcEEecceEEEEEeeCCeeEEEecCCCEEeecEEEecCCCchh
Q 021278 26 SGTIRYSSQVVSIEESGHFKLLHLADGTILKTKVLIGCDGVNSI 69 (315)
Q Consensus 26 ~~~i~~~~~v~~~~~~~~~~~v~~~~g~~~~ad~vVgADG~~S~ 69 (315)
+++++.+ +|++++.++. .|.+++|+++++|+||-|-|....
T Consensus 68 gv~~~~~-~v~~id~~~~--~V~~~~g~~~~yD~LviAtG~~~~ 108 (364)
T TIGR03169 68 GARFVIA-EATGIDPDRR--KVLLANRPPLSYDVLSLDVGSTTP 108 (364)
T ss_pred CCEEEEE-EEEEEecccC--EEEECCCCcccccEEEEccCCCCC
Confidence 5787775 7888877665 577788989999999999998754
No 210
>PRK06854 adenylylsulfate reductase subunit alpha; Validated
Probab=65.51 E-value=23 Score=34.46 Aligned_cols=57 Identities=9% Similarity=0.051 Sum_probs=40.9
Q ss_pred HHHHHHHHHhhC---CCCcEEecceEEEEEeeCCeeE-E---EecCCC--EEeecEEEecCCCchh
Q 021278 13 RKLLLETLAKEL---PSGTIRYSSQVVSIEESGHFKL-L---HLADGT--ILKTKVLIGCDGVNSI 69 (315)
Q Consensus 13 R~~L~~~L~~~~---~~~~i~~~~~v~~~~~~~~~~~-v---~~~~g~--~~~ad~vVgADG~~S~ 69 (315)
-..+...|.+++ .+++++.++.|+++..+++.+. | ...+++ .+.|+.||.|.|..+.
T Consensus 131 G~~~~~~L~~~a~~~ggV~i~~~~~v~~Li~~~g~v~Gv~~~~~~~g~~~~i~AkaVILATGG~~~ 196 (608)
T PRK06854 131 GESYKPIVAEAAKKALGDNVLNRVFITDLLVDDNRIAGAVGFSVRENKFYVFKAKAVIVATGGAAG 196 (608)
T ss_pred hHHHHHHHHHHHHhcCCCEEEeCCEEEEEEEeCCEEEEEEEEEccCCcEEEEECCEEEECCCchhh
Confidence 345666776655 3499999999999986655432 2 223454 6899999999998774
No 211
>PRK06263 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=65.22 E-value=20 Score=34.31 Aligned_cols=56 Identities=13% Similarity=0.048 Sum_probs=40.5
Q ss_pred HHHHHHHHhhC--CCCcEEecceEEEEEeeCCe-eE-EEe---cCCC--EEeecEEEecCCCchh
Q 021278 14 KLLLETLAKEL--PSGTIRYSSQVVSIEESGHF-KL-LHL---ADGT--ILKTKVLIGCDGVNSI 69 (315)
Q Consensus 14 ~~L~~~L~~~~--~~~~i~~~~~v~~~~~~~~~-~~-v~~---~~g~--~~~ad~vVgADG~~S~ 69 (315)
..+...|.+.+ .+++|+++++++++..++++ +. |.. .++. .++|+-||.|.|-.+.
T Consensus 134 ~~i~~~L~~~~~~~gv~i~~~t~v~~Li~~~~~~v~Gv~~~~~~~g~~~~i~AkaVIlATGG~~~ 198 (543)
T PRK06263 134 HEMMMGLMEYLIKERIKILEEVMAIKLIVDENREVIGAIFLDLRNGEIFPIYAKATILATGGAGQ 198 (543)
T ss_pred HHHHHHHHHHHhcCCCEEEeCeEeeeeEEeCCcEEEEEEEEECCCCcEEEEEcCcEEECCCCCCC
Confidence 34566666655 46999999999999876554 32 222 4564 6899999999998874
No 212
>PF00890 FAD_binding_2: FAD binding domain of the Pfam family.; InterPro: IPR003953 In bacteria two distinct, membrane-bound, enzyme complexes are responsible for the interconversion of fumarate and succinate (1.3.99.1 from EC): fumarate reductase (Frd) is used in anaerobic growth, and succinate dehydrogenase (Sdh) is used in aerobic growth. Both complexes consist of two main components: a membrane-extrinsic component composed of a FAD-binding flavoprotein and an iron-sulphur protein; and an hydrophobic component composed of a membrane anchor protein and/or a cytochrome B. In eukaryotes mitochondrial succinate dehydrogenase (ubiquinone) (1.3.5.1 from EC) is an enzyme composed of two subunits: a FAD flavoprotein and and iron-sulphur protein. The flavoprotein subunit is a protein of about 60 to 70 Kd to which FAD is covalently bound to a histidine residue which is located in the N-terminal section of the protein []. The sequence around that histidine is well conserved in Frd and Sdh from various bacterial and eukaryotic species []. This family includes members that bind FAD such as the flavoprotein subunits from succinate and fumarate dehydrogenase, aspartate oxidase and the alpha subunit of adenylylsulphate reductase. ; GO: 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2BS4_A 2BS3_A 2BS2_A 1E7P_J 1QLB_A 1KNR_A 1KNP_A 1CHU_A 2E5V_A 3AEF_A ....
Probab=64.77 E-value=21 Score=32.65 Aligned_cols=58 Identities=26% Similarity=0.251 Sum_probs=40.2
Q ss_pred eHHHHHHHHHhhC--CCCcEEecceEEEEEeeCCee-EEEec---CCC--EEeecEEEecCCCchh
Q 021278 12 RRKLLLETLAKEL--PSGTIRYSSQVVSIEESGHFK-LLHLA---DGT--ILKTKVLIGCDGVNSI 69 (315)
Q Consensus 12 ~R~~L~~~L~~~~--~~~~i~~~~~v~~~~~~~~~~-~v~~~---~g~--~~~ad~vVgADG~~S~ 69 (315)
.-..+.+.|.+.+ .+++|+++++++++..++++| .|..+ +|+ +++|+-||-|.|-.+.
T Consensus 139 ~g~~~~~~l~~~~~~~gv~i~~~~~~~~Li~e~g~V~Gv~~~~~~~g~~~~i~A~aVIlAtGG~~~ 204 (417)
T PF00890_consen 139 GGKALIEALAKAAEEAGVDIRFNTRVTDLITEDGRVTGVVAENPADGEFVRIKAKAVILATGGFGG 204 (417)
T ss_dssp HHHHHHHHHHHHHHHTTEEEEESEEEEEEEEETTEEEEEEEEETTTCEEEEEEESEEEE----BGG
T ss_pred cHHHHHHHHHHHHhhcCeeeeccceeeeEEEeCCceeEEEEEECCCCeEEEEeeeEEEeccCcccc
Confidence 3456777777765 349999999999999987763 24443 454 6889999999999885
No 213
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=64.63 E-value=18 Score=33.53 Aligned_cols=44 Identities=16% Similarity=0.262 Sum_probs=34.4
Q ss_pred CCcEEecceEEEEEeeCCeeEEEe-cCCCEEe--ecEEEecCCCchh
Q 021278 26 SGTIRYSSQVVSIEESGHFKLLHL-ADGTILK--TKVLIGCDGVNSI 69 (315)
Q Consensus 26 ~~~i~~~~~v~~~~~~~~~~~v~~-~~g~~~~--ad~vVgADG~~S~ 69 (315)
+++++.+++|++++.++..+.+.- .++.+++ +|+||-|.|....
T Consensus 70 gv~~~~~~~V~~id~~~~~v~~~~~~~~~~~~~~yd~lviAtG~~~~ 116 (444)
T PRK09564 70 GIDVKTEHEVVKVDAKNKTITVKNLKTGSIFNDTYDKLMIATGARPI 116 (444)
T ss_pred CCeEEecCEEEEEECCCCEEEEEECCCCCEEEecCCEEEECCCCCCC
Confidence 588999999999988777666653 2355666 9999999998753
No 214
>PRK08071 L-aspartate oxidase; Provisional
Probab=64.42 E-value=17 Score=34.51 Aligned_cols=55 Identities=20% Similarity=0.175 Sum_probs=39.9
Q ss_pred HHHHHHHhhC-CCCcEEecceEEEEEeeCCeeE-EEe--cCCC--EEeecEEEecCCCchh
Q 021278 15 LLLETLAKEL-PSGTIRYSSQVVSIEESGHFKL-LHL--ADGT--ILKTKVLIGCDGVNSI 69 (315)
Q Consensus 15 ~L~~~L~~~~-~~~~i~~~~~v~~~~~~~~~~~-v~~--~~g~--~~~ad~vVgADG~~S~ 69 (315)
.+.+.|.+++ .+++++.++.++++..+++.+. |.. .+++ .++|+.||-|.|..+.
T Consensus 131 ~i~~~L~~~~~~gV~i~~~~~v~~Li~~~g~v~Gv~~~~~~g~~~~i~Ak~VVlATGG~~~ 191 (510)
T PRK08071 131 NLLEHLLQELVPHVTVVEQEMVIDLIIENGRCIGVLTKDSEGKLKRYYADYVVLASGGCGG 191 (510)
T ss_pred HHHHHHHHHHhcCCEEEECeEhhheeecCCEEEEEEEEECCCcEEEEEcCeEEEecCCCcc
Confidence 4666676655 4699999999999976655432 333 2343 6899999999999875
No 215
>COG1635 THI4 Ribulose 1,5-bisphosphate synthetase, converts PRPP to RuBP, flavoprotein [Carbohydrate transport and metabolism]
Probab=63.68 E-value=49 Score=27.73 Aligned_cols=68 Identities=13% Similarity=0.165 Sum_probs=49.8
Q ss_pred cceeeeHHHHHHHHHhhC--CCCcEEecceEEEEEeeCC-e---eEEEec---------CCCEEeecEEEecCCCchhhh
Q 021278 7 EMRCVRRKLLLETLAKEL--PSGTIRYSSQVVSIEESGH-F---KLLHLA---------DGTILKTKVLIGCDGVNSIVA 71 (315)
Q Consensus 7 ~~~~i~R~~L~~~L~~~~--~~~~i~~~~~v~~~~~~~~-~---~~v~~~---------~g~~~~ad~vVgADG~~S~vr 71 (315)
..++.+-..+...|..++ .+++|..++.|.++...++ + +.+... |.-+++|++||.|.|-.-.|-
T Consensus 102 g~~v~ds~e~~skl~~~a~~aGaki~n~~~veDvi~r~~~rVaGvVvNWt~V~~~~lhvDPl~i~a~~VvDaTGHda~v~ 181 (262)
T COG1635 102 GYYVADSAEFASKLAARALDAGAKIFNGVSVEDVIVRDDPRVAGVVVNWTPVQMAGLHVDPLTIRAKAVVDATGHDAEVV 181 (262)
T ss_pred ceEEecHHHHHHHHHHHHHhcCceeeecceEEEEEEecCCceEEEEEecchhhhcccccCcceeeEEEEEeCCCCchHHH
Confidence 356777778888888776 4599999999999988766 3 222221 335899999999999876665
Q ss_pred hhh
Q 021278 72 KWL 74 (315)
Q Consensus 72 ~~l 74 (315)
+.+
T Consensus 182 ~~~ 184 (262)
T COG1635 182 SFL 184 (262)
T ss_pred HHH
Confidence 544
No 216
>PRK10262 thioredoxin reductase; Provisional
Probab=63.45 E-value=25 Score=30.96 Aligned_cols=52 Identities=13% Similarity=0.082 Sum_probs=36.0
Q ss_pred HHHHHHhhC--CCCcEEecceEEEEEeeCCee-EEEecCC------CEEeecEEEecCCCc
Q 021278 16 LLETLAKEL--PSGTIRYSSQVVSIEESGHFK-LLHLADG------TILKTKVLIGCDGVN 67 (315)
Q Consensus 16 L~~~L~~~~--~~~~i~~~~~v~~~~~~~~~~-~v~~~~g------~~~~ad~vVgADG~~ 67 (315)
+.+.+.+++ .+++++.+++++++..+++++ .|.++++ +++.+|.||-|-|..
T Consensus 187 ~~~~~~~~l~~~gV~i~~~~~v~~v~~~~~~~~~v~~~~~~~~~~~~~i~~D~vv~a~G~~ 247 (321)
T PRK10262 187 LIKRLMDKVENGNIILHTNRTLEEVTGDQMGVTGVRLRDTQNSDNIESLDVAGLFVAIGHS 247 (321)
T ss_pred HHHHHHhhccCCCeEEEeCCEEEEEEcCCccEEEEEEEEcCCCCeEEEEECCEEEEEeCCc
Confidence 445555554 349999999999998765432 3555432 378999999888875
No 217
>KOG0042 consensus Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=61.53 E-value=40 Score=32.08 Aligned_cols=62 Identities=21% Similarity=0.162 Sum_probs=38.6
Q ss_pred HHHHHHHHHhhCCCCcEEecceEEEEEeeCCe--eEEEecC---CC--EEeecEEEecCCCchhhhhhh
Q 021278 13 RKLLLETLAKELPSGTIRYSSQVVSIEESGHF--KLLHLAD---GT--ILKTKVLIGCDGVNSIVAKWL 74 (315)
Q Consensus 13 R~~L~~~L~~~~~~~~i~~~~~v~~~~~~~~~--~~v~~~~---g~--~~~ad~vVgADG~~S~vr~~l 74 (315)
|..|--+|....-++++.--.+|.++-.++++ +.+...| |+ +|+|+.||-|.|..|--=+.|
T Consensus 225 Rmnl~vAlTA~r~GA~v~Nh~ev~~Llkd~~~kv~Ga~~rD~iTG~e~~I~Ak~VVNATGpfsDsIr~M 293 (680)
T KOG0042|consen 225 RMNLAVALTAARNGATVLNHVEVVSLLKDKDGKVIGARARDHITGKEYEIRAKVVVNATGPFSDSIRKM 293 (680)
T ss_pred HHHHHHHHHHHhcchhhhhHHHHHHHhhCCCCceeeeEEEEeecCcEEEEEEEEEEeCCCCccHHHHhh
Confidence 44444444433334566656677777666554 2344443 43 789999999999988665555
No 218
>PLN02546 glutathione reductase
Probab=61.25 E-value=27 Score=33.60 Aligned_cols=47 Identities=13% Similarity=0.013 Sum_probs=35.5
Q ss_pred CCCcEEecceEEEEEeeCC-eeEEEecCCCEEeecEEEecCCCchhhh
Q 021278 25 PSGTIRYSSQVVSIEESGH-FKLLHLADGTILKTKVLIGCDGVNSIVA 71 (315)
Q Consensus 25 ~~~~i~~~~~v~~~~~~~~-~~~v~~~~g~~~~ad~vVgADG~~S~vr 71 (315)
.+++++.++++.+++..++ .+.+...+++...+|.||-|-|....+.
T Consensus 306 ~GV~i~~~~~v~~i~~~~~g~v~v~~~~g~~~~~D~Viva~G~~Pnt~ 353 (558)
T PLN02546 306 RGIEFHTEESPQAIIKSADGSLSLKTNKGTVEGFSHVMFATGRKPNTK 353 (558)
T ss_pred CCcEEEeCCEEEEEEEcCCCEEEEEECCeEEEecCEEEEeeccccCCC
Confidence 4699999999999986543 3556555555555899999999887664
No 219
>PRK12837 3-ketosteroid-delta-1-dehydrogenase; Provisional
Probab=60.83 E-value=35 Score=32.44 Aligned_cols=43 Identities=16% Similarity=0.322 Sum_probs=30.3
Q ss_pred CCCcEEecceEEEEEeeCCee-EEEe-cCCC--EEeec--EEEecCCCc
Q 021278 25 PSGTIRYSSQVVSIEESGHFK-LLHL-ADGT--ILKTK--VLIGCDGVN 67 (315)
Q Consensus 25 ~~~~i~~~~~v~~~~~~~~~~-~v~~-~~g~--~~~ad--~vVgADG~~ 67 (315)
++++|+++++++++..+++.| .|.. .++. +++|+ +|+++.|..
T Consensus 187 ~gv~i~~~t~~~~Li~~~g~v~Gv~~~~~g~~~~i~A~k~VIlAtGG~~ 235 (513)
T PRK12837 187 PNARLRLNTPLVELVVEDGRVVGAVVERGGERRRVRARRGVLLAAGGFE 235 (513)
T ss_pred CCCEEEeCCEEEEEEecCCEEEEEEEEECCcEEEEEeCceEEEeCCCcc
Confidence 469999999999998775543 2322 3443 68886 888888863
No 220
>PRK08275 putative oxidoreductase; Provisional
Probab=60.04 E-value=29 Score=33.37 Aligned_cols=56 Identities=14% Similarity=0.135 Sum_probs=40.3
Q ss_pred HHHHHHHhhC--CCCcEEecceEEEEEee-CCee-EEE---ecCCC--EEeecEEEecCCCchhh
Q 021278 15 LLLETLAKEL--PSGTIRYSSQVVSIEES-GHFK-LLH---LADGT--ILKTKVLIGCDGVNSIV 70 (315)
Q Consensus 15 ~L~~~L~~~~--~~~~i~~~~~v~~~~~~-~~~~-~v~---~~~g~--~~~ad~vVgADG~~S~v 70 (315)
.+.+.|.+++ .+++|+.++.++++..+ ++.+ -|. ..+|+ .+.|+.||-|.|..+.+
T Consensus 138 ~i~~~L~~~~~~~gv~i~~~~~v~~Li~~~~g~v~Gv~~~~~~~g~~~~i~Ak~VIlATGG~~~~ 202 (554)
T PRK08275 138 DIKKVLYRQLKRARVLITNRIMATRLLTDADGRVAGALGFDCRTGEFLVIRAKAVILCCGAAGRL 202 (554)
T ss_pred HHHHHHHHHHHHCCCEEEcceEEEEEEEcCCCeEEEEEEEecCCCcEEEEECCEEEECCCCcccc
Confidence 4666676655 46999999999999876 3432 222 23554 58999999999998754
No 221
>KOG1336 consensus Monodehydroascorbate/ferredoxin reductase [General function prediction only]
Probab=59.68 E-value=16 Score=33.85 Aligned_cols=39 Identities=26% Similarity=0.284 Sum_probs=35.7
Q ss_pred CCcEEecceEEEEEeeCCeeEEEecCCCEEeecEEEecCCC
Q 021278 26 SGTIRYSSQVVSIEESGHFKLLHLADGTILKTKVLIGCDGV 66 (315)
Q Consensus 26 ~~~i~~~~~v~~~~~~~~~~~v~~~~g~~~~ad~vVgADG~ 66 (315)
+++++.++.|+.++.... +|.+.+|++++++.+|-|.|.
T Consensus 141 gIe~~~~t~v~~~D~~~K--~l~~~~Ge~~kys~LilATGs 179 (478)
T KOG1336|consen 141 GIELILGTSVVKADLASK--TLVLGNGETLKYSKLIIATGS 179 (478)
T ss_pred CceEEEcceeEEeecccc--EEEeCCCceeecceEEEeecC
Confidence 489999999999988776 489999999999999999999
No 222
>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase. Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.
Probab=59.17 E-value=25 Score=32.35 Aligned_cols=43 Identities=9% Similarity=0.176 Sum_probs=33.3
Q ss_pred CCcEEecceEEEEEeeCCeeEEEec-CCCEEe--ecEEEecCCCch
Q 021278 26 SGTIRYSSQVVSIEESGHFKLLHLA-DGTILK--TKVLIGCDGVNS 68 (315)
Q Consensus 26 ~~~i~~~~~v~~~~~~~~~~~v~~~-~g~~~~--ad~vVgADG~~S 68 (315)
+++++.+++|++++..+..+.+.-. ++++++ +|.||-|.|...
T Consensus 58 gv~~~~~~~V~~id~~~~~v~~~~~~~~~~~~~~yd~lIiATG~~p 103 (427)
T TIGR03385 58 GIDVKTNHEVIEVNDERQTVVVRNNKTNETYEESYDYLILSPGASP 103 (427)
T ss_pred CCeEEecCEEEEEECCCCEEEEEECCCCCEEecCCCEEEECCCCCC
Confidence 5888889999999877766655533 245777 999999999854
No 223
>KOG2853 consensus Possible oxidoreductase [General function prediction only]
Probab=57.93 E-value=1.4e+02 Score=26.83 Aligned_cols=33 Identities=21% Similarity=0.281 Sum_probs=23.8
Q ss_pred eEEEecCC--CEEeecEEEecCCCchh-hhhhhCCC
Q 021278 45 KLLHLADG--TILKTKVLIGCDGVNSI-VAKWLGFK 77 (315)
Q Consensus 45 ~~v~~~~g--~~~~ad~vVgADG~~S~-vr~~l~~~ 77 (315)
+.|...|+ .+++++++|-|-|++|. |.+..|+.
T Consensus 295 vvV~m~d~~~r~vk~al~V~aAGa~s~QvArlAgIG 330 (509)
T KOG2853|consen 295 VVVRMNDALARPVKFALCVNAAGAWSGQVARLAGIG 330 (509)
T ss_pred eEEecCchhcCceeEEEEEeccCccHHHHHHHhccC
Confidence 44555454 37999999999999985 46666654
No 224
>PRK07573 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=56.62 E-value=42 Score=32.95 Aligned_cols=53 Identities=8% Similarity=0.092 Sum_probs=38.0
Q ss_pred HHHHhhC--CCCcEEecceEEEEEeeCCeeE-EEec---CCC--EEeecEEEecCCCchhh
Q 021278 18 ETLAKEL--PSGTIRYSSQVVSIEESGHFKL-LHLA---DGT--ILKTKVLIGCDGVNSIV 70 (315)
Q Consensus 18 ~~L~~~~--~~~~i~~~~~v~~~~~~~~~~~-v~~~---~g~--~~~ad~vVgADG~~S~v 70 (315)
+.|.+.+ .+++|++++.++++..+++.+. |... +|. .+.|+.||-|.|-.+.+
T Consensus 174 ~~L~~~~~~~gV~i~~~t~v~~Li~d~g~V~GV~~~~~~~g~~~~i~AkaVVLATGG~g~~ 234 (640)
T PRK07573 174 QALSRQIAAGTVKMYTRTEMLDLVVVDGRARGIVARNLVTGEIERHTADAVVLATGGYGNV 234 (640)
T ss_pred HHHHHHHHhcCCEEEeceEEEEEEEeCCEEEEEEEEECCCCcEEEEECCEEEECCCCcccC
Confidence 4444333 4699999999999987665532 4332 454 68999999999998764
No 225
>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit.
Probab=56.59 E-value=21 Score=35.94 Aligned_cols=42 Identities=19% Similarity=0.177 Sum_probs=35.4
Q ss_pred CCCcEEecceEEEEEeeCCeeEEEecCCCEEeecEEEecCCCch
Q 021278 25 PSGTIRYSSQVVSIEESGHFKLLHLADGTILKTKVLIGCDGVNS 68 (315)
Q Consensus 25 ~~~~i~~~~~v~~~~~~~~~~~v~~~~g~~~~ad~vVgADG~~S 68 (315)
.+++++.+++|++++.+.. .|.+.+|.++.+|.||-|.|...
T Consensus 67 ~gv~~~~g~~V~~Id~~~k--~V~~~~g~~~~yD~LVlATGs~p 108 (785)
T TIGR02374 67 HGITLYTGETVIQIDTDQK--QVITDAGRTLSYDKLILATGSYP 108 (785)
T ss_pred CCCEEEcCCeEEEEECCCC--EEEECCCcEeeCCEEEECCCCCc
Confidence 3589999999999977654 57778899999999999999864
No 226
>PRK12842 putative succinate dehydrogenase; Reviewed
Probab=56.44 E-value=43 Score=32.39 Aligned_cols=54 Identities=17% Similarity=0.047 Sum_probs=36.7
Q ss_pred HHHHHHHhhC--CCCcEEecceEEEEEeeCCee-EEEec--CCC-EEeec-EEEecCCCch
Q 021278 15 LLLETLAKEL--PSGTIRYSSQVVSIEESGHFK-LLHLA--DGT-ILKTK-VLIGCDGVNS 68 (315)
Q Consensus 15 ~L~~~L~~~~--~~~~i~~~~~v~~~~~~~~~~-~v~~~--~g~-~~~ad-~vVgADG~~S 68 (315)
.|...|.+.+ .+++|+.+++|+++..+++.+ .|... ++. .+.++ -||-|.|..+
T Consensus 215 ~l~~~L~~~~~~~Gv~i~~~~~v~~l~~~~g~V~GV~~~~~~~~~~i~a~k~VVlAtGg~~ 275 (574)
T PRK12842 215 ALAARLAKSALDLGIPILTGTPARELLTEGGRVVGARVIDAGGERRITARRGVVLACGGFS 275 (574)
T ss_pred HHHHHHHHHHHhCCCEEEeCCEEEEEEeeCCEEEEEEEEcCCceEEEEeCCEEEEcCCCcc
Confidence 3555565544 459999999999998876653 24443 333 57885 6777888776
No 227
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=56.38 E-value=23 Score=32.03 Aligned_cols=41 Identities=12% Similarity=0.173 Sum_probs=32.7
Q ss_pred CCcEEecceEEEEEeeCCeeEEEecCCCEEeecEEEecCCCchh
Q 021278 26 SGTIRYSSQVVSIEESGHFKLLHLADGTILKTKVLIGCDGVNSI 69 (315)
Q Consensus 26 ~~~i~~~~~v~~~~~~~~~~~v~~~~g~~~~ad~vVgADG~~S~ 69 (315)
+++++.+++|++++.+... |.. ++.++++|.||-|-|....
T Consensus 72 gv~~~~~~~V~~id~~~~~--v~~-~~~~~~yd~LVlATG~~~~ 112 (377)
T PRK04965 72 NLRLFPHTWVTDIDAEAQV--VKS-QGNQWQYDKLVLATGASAF 112 (377)
T ss_pred CCEEECCCEEEEEECCCCE--EEE-CCeEEeCCEEEECCCCCCC
Confidence 5889999999999876543 443 5678999999999998753
No 228
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=55.70 E-value=31 Score=31.99 Aligned_cols=45 Identities=13% Similarity=0.069 Sum_probs=34.6
Q ss_pred CCCcEEecceEEEEEeeCCeeEEEecC-CC--EEeecEEEecCCCchh
Q 021278 25 PSGTIRYSSQVVSIEESGHFKLLHLAD-GT--ILKTKVLIGCDGVNSI 69 (315)
Q Consensus 25 ~~~~i~~~~~v~~~~~~~~~~~v~~~~-g~--~~~ad~vVgADG~~S~ 69 (315)
.+++++.+++|++++.++..+.+.-.+ ++ ++++|.||-|.|.+..
T Consensus 71 ~~i~v~~~~~V~~Id~~~~~v~~~~~~~~~~~~~~yd~lviAtGs~~~ 118 (438)
T PRK13512 71 KQITVKTYHEVIAINDERQTVTVLNRKTNEQFEESYDKLILSPGASAN 118 (438)
T ss_pred CCCEEEeCCEEEEEECCCCEEEEEECCCCcEEeeecCEEEECCCCCCC
Confidence 368899999999998887766665432 23 4789999999998753
No 229
>PRK12843 putative FAD-binding dehydrogenase; Reviewed
Probab=55.68 E-value=46 Score=32.22 Aligned_cols=58 Identities=16% Similarity=0.073 Sum_probs=39.7
Q ss_pred HHHHHHHhhC--CCCcEEecceEEEEEeeCCee-EEEec-CCC--EEee-cEEEecCCCchhhhh
Q 021278 15 LLLETLAKEL--PSGTIRYSSQVVSIEESGHFK-LLHLA-DGT--ILKT-KVLIGCDGVNSIVAK 72 (315)
Q Consensus 15 ~L~~~L~~~~--~~~~i~~~~~v~~~~~~~~~~-~v~~~-~g~--~~~a-d~vVgADG~~S~vr~ 72 (315)
.|...|.+++ .+++|+.+++++++..+++.+ .|... +++ ++.| +-||-|.|..+.-.+
T Consensus 222 ~l~~aL~~~~~~~Gv~i~~~t~v~~Li~~~g~V~GV~~~~~g~~~~i~A~~~VVlAtGg~~~n~e 286 (578)
T PRK12843 222 ALIGRLLYSLRARGVRILTQTDVESLETDHGRVIGATVVQGGVRRRIRARGGVVLATGGFNRHPQ 286 (578)
T ss_pred HHHHHHHHHHHhCCCEEEeCCEEEEEEeeCCEEEEEEEecCCeEEEEEccceEEECCCCcccCHH
Confidence 3555666655 469999999999988765543 24343 333 5776 788889998887533
No 230
>PRK08205 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=55.66 E-value=42 Score=32.54 Aligned_cols=57 Identities=18% Similarity=0.183 Sum_probs=41.0
Q ss_pred HHHHHHHHhhC--CCCcEEecceEEEEEeeC----Cee-EEE---ecCCC--EEeecEEEecCCCchhh
Q 021278 14 KLLLETLAKEL--PSGTIRYSSQVVSIEESG----HFK-LLH---LADGT--ILKTKVLIGCDGVNSIV 70 (315)
Q Consensus 14 ~~L~~~L~~~~--~~~~i~~~~~v~~~~~~~----~~~-~v~---~~~g~--~~~ad~vVgADG~~S~v 70 (315)
..+.+.|.+.+ .+++++.++.++++..++ +.+ -|. .+++. .++|+-||.|.|-.+.+
T Consensus 140 ~~i~~~L~~~~~~~gv~i~~~~~v~~Li~~~~~~~g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG~~~~ 208 (583)
T PRK08205 140 HMILQTLYQNCVKHGVEFFNEFYVLDLLLTETPSGPVAAGVVAYELATGEIHVFHAKAVVFATGGSGRV 208 (583)
T ss_pred HHHHHHHHHHHHhcCCEEEeCCEEEEEEecCCccCCcEEEEEEEEcCCCeEEEEEeCeEEECCCCCccc
Confidence 45667777765 459999999999997654 332 222 24554 68999999999998854
No 231
>PF07992 Pyr_redox_2: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR023753 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes the FAD binding domain which has a nested NADH binding domain and is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3IC9_A 1Q1W_A 3LB8_A 1Q1R_B 3GD4_A 1GV4_A 3GD3_A 2EQ9_E 2EQ6_B 2EQ8_E ....
Probab=55.40 E-value=10 Score=30.51 Aligned_cols=45 Identities=24% Similarity=0.296 Sum_probs=33.4
Q ss_pred CCCcEEecceEEEEEeeCCe-----eEE---EecCCCEEeecEEEecCCCchh
Q 021278 25 PSGTIRYSSQVVSIEESGHF-----KLL---HLADGTILKTKVLIGCDGVNSI 69 (315)
Q Consensus 25 ~~~~i~~~~~v~~~~~~~~~-----~~v---~~~~g~~~~ad~vVgADG~~S~ 69 (315)
.+++++.+.++.+++..... +.+ ...++.++.+|+||.|.|..+.
T Consensus 71 ~~v~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~d~lviAtG~~~~ 123 (201)
T PF07992_consen 71 RGVEIRLNAKVVSIDPESKRVVCPAVTIQVVETGDGREIKYDYLVIATGSRPR 123 (201)
T ss_dssp HTHEEEHHHTEEEEEESTTEEEETCEEEEEEETTTEEEEEEEEEEEESTEEEE
T ss_pred ceEEEeeccccccccccccccccCcccceeeccCCceEecCCeeeecCccccc
Confidence 35888889999999887763 222 2234468999999999997644
No 232
>PRK09077 L-aspartate oxidase; Provisional
Probab=55.37 E-value=33 Score=32.85 Aligned_cols=59 Identities=17% Similarity=0.121 Sum_probs=41.9
Q ss_pred HHHHHHHHhhC---CCCcEEecceEEEEEeeC------Cee-EEEe---cCCC--EEeecEEEecCCCchhhhh
Q 021278 14 KLLLETLAKEL---PSGTIRYSSQVVSIEESG------HFK-LLHL---ADGT--ILKTKVLIGCDGVNSIVAK 72 (315)
Q Consensus 14 ~~L~~~L~~~~---~~~~i~~~~~v~~~~~~~------~~~-~v~~---~~g~--~~~ad~vVgADG~~S~vr~ 72 (315)
..+...|.+++ ++++|+.++.++.+..++ +.+ .|.+ .+++ .+.|+.||.|.|..+.+..
T Consensus 138 ~~i~~~L~~~~~~~~~I~v~~~~~v~~Li~~~~~~~~~g~v~Gv~~~~~~~g~~~~i~Ak~VVlATGG~~~~~~ 211 (536)
T PRK09077 138 KAVQTTLVERARNHPNITVLERHNAIDLITSDKLGLPGRRVVGAYVLNRNKERVETIRAKFVVLATGGASKVYL 211 (536)
T ss_pred HHHHHHHHHHHHhCCCcEEEeeEEeeeeeecccccCCCCEEEEEEEEECCCCcEEEEecCeEEECCCCCCCCCC
Confidence 35666676654 579999999999987643 332 2433 2454 6899999999999987654
No 233
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=55.05 E-value=39 Score=32.17 Aligned_cols=43 Identities=21% Similarity=0.124 Sum_probs=32.9
Q ss_pred CCCcEEecceEEEEEeeCCee-EEEecCC-----CEEeecEEEecCCCc
Q 021278 25 PSGTIRYSSQVVSIEESGHFK-LLHLADG-----TILKTKVLIGCDGVN 67 (315)
Q Consensus 25 ~~~~i~~~~~v~~~~~~~~~~-~v~~~~g-----~~~~ad~vVgADG~~ 67 (315)
.++++++++.+++++.+++++ .|.++++ +++.+|.||.|-|..
T Consensus 401 ~gV~i~~~~~v~~i~~~~~~v~~v~~~~~~~~~~~~i~~D~vi~a~G~~ 449 (515)
T TIGR03140 401 PNVDILTSAQTTEIVGDGDKVTGIRYQDRNSGEEKQLDLDGVFVQIGLV 449 (515)
T ss_pred CCCEEEECCeeEEEEcCCCEEEEEEEEECCCCcEEEEEcCEEEEEeCCc
Confidence 479999999999998765554 3666542 368999999988875
No 234
>PRK14989 nitrite reductase subunit NirD; Provisional
Probab=52.25 E-value=28 Score=35.37 Aligned_cols=43 Identities=14% Similarity=0.196 Sum_probs=35.3
Q ss_pred CCCcEEecceEEEEEeeCCeeEEEecCCCEEeecEEEecCCCchh
Q 021278 25 PSGTIRYSSQVVSIEESGHFKLLHLADGTILKTKVLIGCDGVNSI 69 (315)
Q Consensus 25 ~~~~i~~~~~v~~~~~~~~~~~v~~~~g~~~~ad~vVgADG~~S~ 69 (315)
.+++++.+++|++++.+.. .|...+|+++++|.||-|.|....
T Consensus 72 ~gI~~~~g~~V~~Id~~~~--~V~~~~G~~i~yD~LVIATGs~p~ 114 (847)
T PRK14989 72 HGIKVLVGERAITINRQEK--VIHSSAGRTVFYDKLIMATGSYPW 114 (847)
T ss_pred CCCEEEcCCEEEEEeCCCc--EEEECCCcEEECCEEEECCCCCcC
Confidence 3689999999999976543 466788899999999999998654
No 235
>COG0446 HcaD Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]
Probab=51.68 E-value=48 Score=29.88 Aligned_cols=43 Identities=21% Similarity=0.277 Sum_probs=36.7
Q ss_pred CCcEEecceEEEEEeeCCeeE---EEecCCCEEeecEEEecCCCch
Q 021278 26 SGTIRYSSQVVSIEESGHFKL---LHLADGTILKTKVLIGCDGVNS 68 (315)
Q Consensus 26 ~~~i~~~~~v~~~~~~~~~~~---v~~~~g~~~~ad~vVgADG~~S 68 (315)
+++++.+.++.+++.+.+.+. +...++..+++|+++.+-|..-
T Consensus 192 gi~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~d~~~~~~g~~p 237 (415)
T COG0446 192 GVELLLGTKVVGVEGKGNTLVVERVVGIDGEEIKADLVIIGPGERP 237 (415)
T ss_pred CcEEEeCCceEEEEcccCcceeeEEEEeCCcEEEeeEEEEeecccc
Confidence 488999999999998877643 6778889999999999999764
No 236
>PRK07843 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=50.64 E-value=69 Score=30.86 Aligned_cols=54 Identities=15% Similarity=0.156 Sum_probs=33.8
Q ss_pred HHHHHHhhC--CCCcEEecceEEEEEeeCCeeE-EEec-CCC--EEeec-EEEecCCCchh
Q 021278 16 LLETLAKEL--PSGTIRYSSQVVSIEESGHFKL-LHLA-DGT--ILKTK-VLIGCDGVNSI 69 (315)
Q Consensus 16 L~~~L~~~~--~~~~i~~~~~v~~~~~~~~~~~-v~~~-~g~--~~~ad-~vVgADG~~S~ 69 (315)
+...|.+.+ .+++|+++++++++..++++++ |... +++ .++|+ -||-|.|-.+.
T Consensus 210 ~~~~L~~~~~~~gv~v~~~t~v~~l~~~~g~v~Gv~~~~~g~~~~i~A~~~VIlAtGG~~~ 270 (557)
T PRK07843 210 LAAGLRIGLQRAGVPVLLNTPLTDLYVEDGRVTGVHAAESGEPQLIRARRGVILASGGFEH 270 (557)
T ss_pred HHHHHHHHHHcCCCEEEeCCEEEEEEEeCCEEEEEEEEeCCcEEEEEeceeEEEccCCcCc
Confidence 455555544 4599999999999988766533 3333 443 58885 35555554443
No 237
>PRK07512 L-aspartate oxidase; Provisional
Probab=50.12 E-value=37 Score=32.33 Aligned_cols=55 Identities=15% Similarity=0.121 Sum_probs=39.0
Q ss_pred HHHHHHHhhC---CCCcEEecceEEEEEeeCCee-EEEec-CCC--EEeecEEEecCCCchh
Q 021278 15 LLLETLAKEL---PSGTIRYSSQVVSIEESGHFK-LLHLA-DGT--ILKTKVLIGCDGVNSI 69 (315)
Q Consensus 15 ~L~~~L~~~~---~~~~i~~~~~v~~~~~~~~~~-~v~~~-~g~--~~~ad~vVgADG~~S~ 69 (315)
.+.+.|.+++ ++++++.++.++++..+++.+ .|... ++. .+.|+-||.|.|-.+.
T Consensus 137 ~l~~~L~~~~~~~~gV~i~~~~~v~~Li~~~g~v~Gv~~~~~~~~~~i~Ak~VVLATGG~~~ 198 (513)
T PRK07512 137 AIMRALIAAVRATPSITVLEGAEARRLLVDDGAVAGVLAATAGGPVVLPARAVVLATGGIGG 198 (513)
T ss_pred HHHHHHHHHHHhCCCCEEEECcChhheeecCCEEEEEEEEeCCeEEEEECCEEEEcCCCCcC
Confidence 4666676654 369999999999987655542 23332 333 6899999999998764
No 238
>TIGR01811 sdhA_Bsu succinate dehydrogenase or fumarate reductase, flavoprotein subunit, Bacillus subtilis subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in the low-GC Gram-positive bacteria and a few other lineages. This enzyme may act in a complete or partial TCA cycle, or act in the opposite direction as fumarate reductase. In some but not all species, succinate dehydrogenase and fumarate reductase may be encoded as separate isozymes.
Probab=49.74 E-value=64 Score=31.43 Aligned_cols=46 Identities=11% Similarity=-0.091 Sum_probs=33.6
Q ss_pred CCCcEEecceEEEEEeeCC-ee-EEEec---CCC--EEeecEEEecCCCchhh
Q 021278 25 PSGTIRYSSQVVSIEESGH-FK-LLHLA---DGT--ILKTKVLIGCDGVNSIV 70 (315)
Q Consensus 25 ~~~~i~~~~~v~~~~~~~~-~~-~v~~~---~g~--~~~ad~vVgADG~~S~v 70 (315)
.+++++++++++++..+++ .+ -|... ++. .+.|+.||.|.|-.+.+
T Consensus 146 ~gV~i~~~t~v~~Li~dd~grV~GV~~~~~~~g~~~~i~AkaVVLATGG~g~~ 198 (603)
T TIGR01811 146 GLVEKYEGWEMLDIIVVDGNRARGIIARNLVTGEIETHSADAVILATGGYGNV 198 (603)
T ss_pred CCcEEEeCcEEEEEEEcCCCEEEEEEEEECCCCcEEEEEcCEEEECCCCCcCc
Confidence 3699999999999987543 32 23332 453 68999999999987654
No 239
>PLN00128 Succinate dehydrogenase [ubiquinone] flavoprotein subunit
Probab=48.49 E-value=56 Score=32.08 Aligned_cols=57 Identities=14% Similarity=0.032 Sum_probs=40.2
Q ss_pred HHHHHHHHhhC--CCCcEEecceEEEEEee-CCee-EEEe---cCCC--EEeecEEEecCCCchhh
Q 021278 14 KLLLETLAKEL--PSGTIRYSSQVVSIEES-GHFK-LLHL---ADGT--ILKTKVLIGCDGVNSIV 70 (315)
Q Consensus 14 ~~L~~~L~~~~--~~~~i~~~~~v~~~~~~-~~~~-~v~~---~~g~--~~~ad~vVgADG~~S~v 70 (315)
..+...|.+++ .+++++.++.++++..+ ++.+ -|.. .+|+ .+.|+-||.|+|-.+..
T Consensus 187 ~~i~~~L~~~a~~~gv~i~~~~~~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVILATGG~g~~ 252 (635)
T PLN00128 187 HAMLHTLYGQAMKHNTQFFVEYFALDLIMDSDGACQGVIALNMEDGTLHRFRAHSTILATGGYGRA 252 (635)
T ss_pred HHHHHHHHHHHHhCCCEEEEeeEEEEEEEcCCCEEEEEEEEEcCCCeEEEEEcCeEEECCCCCccc
Confidence 34666666654 46999999999998765 3432 2332 3564 68999999999988753
No 240
>PTZ00139 Succinate dehydrogenase [ubiquinone] flavoprotein subunit; Provisional
Probab=48.17 E-value=54 Score=32.04 Aligned_cols=55 Identities=11% Similarity=0.022 Sum_probs=39.7
Q ss_pred HHHHHHHhhC--CCCcEEecceEEEEEe-eCCeeE-EE---ecCCC--EEeecEEEecCCCchh
Q 021278 15 LLLETLAKEL--PSGTIRYSSQVVSIEE-SGHFKL-LH---LADGT--ILKTKVLIGCDGVNSI 69 (315)
Q Consensus 15 ~L~~~L~~~~--~~~~i~~~~~v~~~~~-~~~~~~-v~---~~~g~--~~~ad~vVgADG~~S~ 69 (315)
.+...|.+++ .+++++.++.++++.. +++.+. |. ..+|. .+.|+.||.|.|-.+.
T Consensus 167 ~i~~~L~~~a~~~gv~i~~~~~~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG~~~ 230 (617)
T PTZ00139 167 AMLHTLYGQSLKYDCNFFIEYFALDLIMDEDGECRGVIAMSMEDGSIHRFRAHYTVIATGGYGR 230 (617)
T ss_pred HHHHHHHHHHHhCCCEEEeceEEEEEEECCCCEEEEEEEEECCCCeEEEEECCcEEEeCCCCcc
Confidence 6677777755 4599999999999887 344322 32 24564 6889999999998764
No 241
>KOG3851 consensus Sulfide:quinone oxidoreductase/flavo-binding protein [Energy production and conversion]
Probab=47.44 E-value=16 Score=32.25 Aligned_cols=35 Identities=11% Similarity=0.104 Sum_probs=26.3
Q ss_pred ceEEEEEeeCCeeEEEecCCCEEeecEEEecCCCchh
Q 021278 33 SQVVSIEESGHFKLLHLADGTILKTKVLIGCDGVNSI 69 (315)
Q Consensus 33 ~~v~~~~~~~~~~~v~~~~g~~~~ad~vVgADG~~S~ 69 (315)
-+|.+++.++ -+|..++|++|.+||+|-|-|++=.
T Consensus 112 ekv~~f~P~~--N~v~t~gg~eIsYdylviA~Giql~ 146 (446)
T KOG3851|consen 112 EKVKEFNPDK--NTVVTRGGEEISYDYLVIAMGIQLD 146 (446)
T ss_pred HHHHhcCCCc--CeEEccCCcEEeeeeEeeeeeceec
Confidence 3455554444 4688899999999999999998743
No 242
>PRK06452 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=47.20 E-value=72 Score=30.82 Aligned_cols=56 Identities=16% Similarity=0.093 Sum_probs=40.3
Q ss_pred HHHHHHHhhC--CCCcEEecceEEEEEeeCCeeE-EEec---CCC--EEeecEEEecCCCchhh
Q 021278 15 LLLETLAKEL--PSGTIRYSSQVVSIEESGHFKL-LHLA---DGT--ILKTKVLIGCDGVNSIV 70 (315)
Q Consensus 15 ~L~~~L~~~~--~~~~i~~~~~v~~~~~~~~~~~-v~~~---~g~--~~~ad~vVgADG~~S~v 70 (315)
.+...|.+++ .+++++.++.++++..+++.+. |... +++ .++|+-||-|.|-.+.+
T Consensus 137 ~i~~~L~~~~~~~gv~i~~~~~~~~Li~~~g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG~~~l 200 (566)
T PRK06452 137 ALLHTLFERTSGLNVDFYNEWFSLDLVTDNKKVVGIVAMQMKTLTPFFFKTKAVVLATGGMGML 200 (566)
T ss_pred HHHHHHHHHHHhCCCEEEeCcEEEEEEEECCEEEEEEEEECCCCeEEEEEeCeEEECCCccccc
Confidence 4556666654 3599999999999998765432 3332 333 68899999999988754
No 243
>PTZ00153 lipoamide dehydrogenase; Provisional
Probab=46.94 E-value=65 Score=31.77 Aligned_cols=46 Identities=4% Similarity=0.034 Sum_probs=34.7
Q ss_pred CCCcEEecceEEEEEeeCCe--eEEEecC-------C--------CEEeecEEEecCCCchhh
Q 021278 25 PSGTIRYSSQVVSIEESGHF--KLLHLAD-------G--------TILKTKVLIGCDGVNSIV 70 (315)
Q Consensus 25 ~~~~i~~~~~v~~~~~~~~~--~~v~~~~-------g--------~~~~ad~vVgADG~~S~v 70 (315)
.+++|+.+++|.+++.+++. +.+.+.+ + +++++|.||-|-|..-.+
T Consensus 367 ~GV~I~~~~~V~~I~~~~~~~~v~v~~~~~~~~~~~~~~~~~~~~~~i~aD~VlvAtGr~Pnt 429 (659)
T PTZ00153 367 KPVRVHLNTLIEYVRAGKGNQPVIIGHSERQTGESDGPKKNMNDIKETYVDSCLVATGRKPNT 429 (659)
T ss_pred CCcEEEcCCEEEEEEecCCceEEEEEEeccccccccccccccccceEEEcCEEEEEECcccCC
Confidence 45999999999999876543 5665431 1 279999999999987554
No 244
>PRK09078 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=46.54 E-value=67 Score=31.29 Aligned_cols=55 Identities=15% Similarity=0.125 Sum_probs=40.4
Q ss_pred HHHHHHHhhC--CCCcEEecceEEEEEeeC-Cee-EEE---ecCCC--EEeecEEEecCCCchh
Q 021278 15 LLLETLAKEL--PSGTIRYSSQVVSIEESG-HFK-LLH---LADGT--ILKTKVLIGCDGVNSI 69 (315)
Q Consensus 15 ~L~~~L~~~~--~~~~i~~~~~v~~~~~~~-~~~-~v~---~~~g~--~~~ad~vVgADG~~S~ 69 (315)
.+...|.+.+ .+++++.++.++++..++ +.+ -|. .++|. .+.|+-||-|.|-.+.
T Consensus 150 ~i~~~L~~~~~~~gi~i~~~~~v~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG~~~ 213 (598)
T PRK09078 150 AILHTLYQQSLKHNAEFFIEYFALDLIMDDGGVCRGVVAWNLDDGTLHRFRAHMVVLATGGYGR 213 (598)
T ss_pred HHHHHHHHHHhhcCCEEEEeEEEEEEEEcCCCEEEEEEEEECCCCcEEEEEcCEEEECCCCCcc
Confidence 4667777655 459999999999998765 332 233 24564 7899999999998875
No 245
>PLN02661 Putative thiazole synthesis
Probab=46.26 E-value=1.2e+02 Score=27.46 Aligned_cols=55 Identities=15% Similarity=0.262 Sum_probs=37.4
Q ss_pred HHHHHHHHhhC---CCCcEEecceEEEEEeeCCe---eEEEe----cC--C------CEEeecEEEecCCCch
Q 021278 14 KLLLETLAKEL---PSGTIRYSSQVVSIEESGHF---KLLHL----AD--G------TILKTKVLIGCDGVNS 68 (315)
Q Consensus 14 ~~L~~~L~~~~---~~~~i~~~~~v~~~~~~~~~---~~v~~----~~--g------~~~~ad~vVgADG~~S 68 (315)
..+.+.|.+++ ++++++.++.++++..+++. +.+.. .+ + ..++|+.||-|.|-.+
T Consensus 172 ~e~~stLi~ka~~~~gVkI~~~t~V~DLI~~~grVaGVVvnw~~v~~~~~~~s~~dp~~I~AkaVVlATGh~g 244 (357)
T PLN02661 172 ALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGDRVGGVVTNWALVAQNHDTQSCMDPNVMEAKVVVSSCGHDG 244 (357)
T ss_pred HHHHHHHHHHHHhcCCCEEEeCeEeeeEEecCCEEEEEEeecchhhhccCCCCccceeEEECCEEEEcCCCCC
Confidence 44445566543 56999999999999887664 22211 11 1 2689999999999554
No 246
>TIGR01816 sdhA_forward succinate dehydrogenase, flavoprotein subunit, E. coli/mitochondrial subgroup. Succinate dehydrogenase and fumarate reductase are homologous enzymes reversible in principle but favored under different circumstances. This model represents a narrowly defined clade of the succinate dehydrogenase flavoprotein subunit as found in mitochondria, in Rickettsia, in E. coli and other Proteobacteria, and in a few other lineages. However, this model excludes all known fumarate reductases. It also excludes putative succinate dehydrogenases that appear to diverged before the split between E. coli succinate dehydrogenase and fumarate reductase.
Probab=46.15 E-value=84 Score=30.33 Aligned_cols=56 Identities=13% Similarity=0.076 Sum_probs=41.1
Q ss_pred HHHHHHHhhC--CCCcEEecceEEEEEeeCCee-EEE---ecCCC--EEeecEEEecCCCchhh
Q 021278 15 LLLETLAKEL--PSGTIRYSSQVVSIEESGHFK-LLH---LADGT--ILKTKVLIGCDGVNSIV 70 (315)
Q Consensus 15 ~L~~~L~~~~--~~~~i~~~~~v~~~~~~~~~~-~v~---~~~g~--~~~ad~vVgADG~~S~v 70 (315)
.+...|.+++ .+++|..++.++++..+++.+ -|. ..+|. .+.|+-||-|.|-.+.+
T Consensus 120 ~i~~~L~~~~~~~gi~i~~~~~~~~Li~~~g~v~Ga~~~~~~~g~~~~i~AkaVILATGG~~~~ 183 (565)
T TIGR01816 120 AILHTLYQQNLKADTSFFNEYFALDLLMEDGECRGVIAYCLETGEIHRFRAKAVVLATGGYGRI 183 (565)
T ss_pred HHHHHHHHHHHhCCCEEEeccEEEEEEeeCCEEEEEEEEEcCCCcEEEEEeCeEEECCCCcccc
Confidence 5677777765 459999999999998765542 222 23554 68999999999988754
No 247
>PRK07057 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=45.88 E-value=65 Score=31.29 Aligned_cols=56 Identities=16% Similarity=0.097 Sum_probs=40.0
Q ss_pred HHHHHHHhhC--CCCcEEecceEEEEEeeC-Ce-eEEEe---cCCC--EEeecEEEecCCCchhh
Q 021278 15 LLLETLAKEL--PSGTIRYSSQVVSIEESG-HF-KLLHL---ADGT--ILKTKVLIGCDGVNSIV 70 (315)
Q Consensus 15 ~L~~~L~~~~--~~~~i~~~~~v~~~~~~~-~~-~~v~~---~~g~--~~~ad~vVgADG~~S~v 70 (315)
.|...|.+.+ .+++++.++.++++..++ +. +-|.. .++. .+.|+-||.|.|-.+.+
T Consensus 149 ~l~~~L~~~~~~~gi~i~~~~~~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVILATGG~~~~ 213 (591)
T PRK07057 149 ALLHTLYQQNVAAKTQFFVEWMALDLIRDADGDVLGVTALEMETGDVYILEAKTTLFATGGAGRI 213 (591)
T ss_pred HHHHHHHHHHHhcCCEEEeCcEEEEEEEcCCCeEEEEEEEEcCCCeEEEEECCeEEECCCCcccc
Confidence 4666776654 458999999999998753 33 22332 3454 68899999999998764
No 248
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Probab=45.62 E-value=67 Score=29.62 Aligned_cols=42 Identities=24% Similarity=0.224 Sum_probs=30.3
Q ss_pred CCcEEEeccCCCCCCCCCccchhhhhhHHHHHHHHHHHHHhc
Q 021278 192 RGSVCVAGDALHPMTPDIGQGGCAALEDGIVLARCINEALKT 233 (315)
Q Consensus 192 ~~~v~LiGDAAh~~~P~~G~G~~~al~da~~La~~l~~~~~~ 233 (315)
..+|..+||+|..-.+-...-...|+..+..+|+.|...+.+
T Consensus 308 ~~~IfAiGD~a~~~~~~~~~~~~~A~~qg~~~A~ni~~~l~g 349 (424)
T PTZ00318 308 IPNVFALGDCAANEERPLPTLAQVASQQGVYLAKEFNNELKG 349 (424)
T ss_pred CCCEEEEeccccCCCCCCCCchHHHHHHHHHHHHHHHHHhcC
Confidence 468999999998633211222356899999999999887764
No 249
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=45.29 E-value=56 Score=31.44 Aligned_cols=56 Identities=16% Similarity=0.250 Sum_probs=39.2
Q ss_pred eHHHHHHHHHhhCC--CCcEEecceEEEEEeeCCeeEEEecCCCEEeecEEEecCCCchh
Q 021278 12 RRKLLLETLAKELP--SGTIRYSSQVVSIEESGHFKLLHLADGTILKTKVLIGCDGVNSI 69 (315)
Q Consensus 12 ~R~~L~~~L~~~~~--~~~i~~~~~v~~~~~~~~~~~v~~~~g~~~~ad~vVgADG~~S~ 69 (315)
....+.+.+.+.+. +++++ +++|++++.+++...|...++ ++.++.||-|.|.+..
T Consensus 58 ~~~~l~~~l~~~~~~~gv~~~-~~~V~~i~~~~~~~~V~~~~g-~~~a~~lVlATGa~p~ 115 (555)
T TIGR03143 58 TGPELMQEMRQQAQDFGVKFL-QAEVLDVDFDGDIKTIKTARG-DYKTLAVLIATGASPR 115 (555)
T ss_pred CHHHHHHHHHHHHHHcCCEEe-ccEEEEEEecCCEEEEEecCC-EEEEeEEEECCCCccC
Confidence 44566666665542 46764 678888887666566666555 6889999999999753
No 250
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=45.19 E-value=64 Score=30.67 Aligned_cols=43 Identities=23% Similarity=0.229 Sum_probs=32.9
Q ss_pred CCCcEEecceEEEEEeeCCeeE-EEecC---CC--EEeecEEEecCCCc
Q 021278 25 PSGTIRYSSQVVSIEESGHFKL-LHLAD---GT--ILKTKVLIGCDGVN 67 (315)
Q Consensus 25 ~~~~i~~~~~v~~~~~~~~~~~-v~~~~---g~--~~~ad~vVgADG~~ 67 (315)
+++++++++.+++++.+++.++ |++++ ++ ++.+|.|+-|-|..
T Consensus 400 ~gI~i~~~~~v~~i~~~~g~v~~v~~~~~~~g~~~~i~~D~v~~~~G~~ 448 (517)
T PRK15317 400 PNVTIITNAQTTEVTGDGDKVTGLTYKDRTTGEEHHLELEGVFVQIGLV 448 (517)
T ss_pred CCcEEEECcEEEEEEcCCCcEEEEEEEECCCCcEEEEEcCEEEEeECCc
Confidence 5799999999999987655543 55543 33 68899999998875
No 251
>PRK07845 flavoprotein disulfide reductase; Reviewed
Probab=44.67 E-value=72 Score=29.86 Aligned_cols=43 Identities=19% Similarity=0.154 Sum_probs=31.5
Q ss_pred CCcEEecceEEEEE--eeCCeeEEEecCCC--EEeecEEEecCCCchh
Q 021278 26 SGTIRYSSQVVSIE--ESGHFKLLHLADGT--ILKTKVLIGCDGVNSI 69 (315)
Q Consensus 26 ~~~i~~~~~v~~~~--~~~~~~~v~~~~g~--~~~ad~vVgADG~~S~ 69 (315)
+++++.+.- +.++ .+++.+.|..++|+ ++++|.||-|.|....
T Consensus 106 gV~~~~g~~-~~~~~~~~~~~v~V~~~~g~~~~~~~d~lViATGs~p~ 152 (466)
T PRK07845 106 GVRVIAGRG-RLIDPGLGPHRVKVTTADGGEETLDADVVLIATGASPR 152 (466)
T ss_pred CCEEEEEEE-EEeecccCCCEEEEEeCCCceEEEecCEEEEcCCCCCC
Confidence 588887643 3333 45566788877776 7999999999999763
No 252
>PRK10262 thioredoxin reductase; Provisional
Probab=44.54 E-value=73 Score=27.92 Aligned_cols=53 Identities=15% Similarity=0.178 Sum_probs=34.0
Q ss_pred HHHHHHHHhhCC--CCcEEecceEEEEEeeCCeeEEEecCCCEEeecEEEecCCCch
Q 021278 14 KLLLETLAKELP--SGTIRYSSQVVSIEESGHFKLLHLADGTILKTKVLIGCDGVNS 68 (315)
Q Consensus 14 ~~L~~~L~~~~~--~~~i~~~~~v~~~~~~~~~~~v~~~~g~~~~ad~vVgADG~~S 68 (315)
..+.+.+.+.+. +.+++.+ +|.+++..++.+++...+ .++++|.||-|.|.+.
T Consensus 63 ~~~~~~~~~~~~~~~~~~~~~-~v~~v~~~~~~~~v~~~~-~~~~~d~vilAtG~~~ 117 (321)
T PRK10262 63 PLLMERMHEHATKFETEIIFD-HINKVDLQNRPFRLTGDS-GEYTCDALIIATGASA 117 (321)
T ss_pred HHHHHHHHHHHHHCCCEEEee-EEEEEEecCCeEEEEecC-CEEEECEEEECCCCCC
Confidence 344444444432 2456664 567777766666665433 4789999999999874
No 253
>PRK14694 putative mercuric reductase; Provisional
Probab=44.18 E-value=58 Score=30.50 Aligned_cols=40 Identities=13% Similarity=0.069 Sum_probs=28.9
Q ss_pred CCcEEecceEEEEEeeCCeeEEEecCCC--EEeecEEEecCCCch
Q 021278 26 SGTIRYSSQVVSIEESGHFKLLHLADGT--ILKTKVLIGCDGVNS 68 (315)
Q Consensus 26 ~~~i~~~~~v~~~~~~~~~~~v~~~~g~--~~~ad~vVgADG~~S 68 (315)
++++..+ +++.+ +.+.+.|++.+|. ++++|.||-|.|...
T Consensus 111 ~v~~~~g-~v~~i--d~~~~~V~~~~g~~~~~~~d~lViATGs~p 152 (468)
T PRK14694 111 AITVLNG-EARFV--DERTLTVTLNDGGEQTVHFDRAFIGTGARP 152 (468)
T ss_pred CeEEEEE-EEEEe--cCCEEEEEecCCCeEEEECCEEEEeCCCCC
Confidence 4566665 35555 3455778888774 799999999999864
No 254
>KOG1346 consensus Programmed cell death 8 (apoptosis-inducing factor) [Signal transduction mechanisms]
Probab=43.49 E-value=33 Score=31.54 Aligned_cols=58 Identities=21% Similarity=0.188 Sum_probs=43.7
Q ss_pred cceeeeHHHHHHHHHhhCCCCcEEecceEEEEEeeCCeeEEEecCCCEEeecEEEecCCCchh
Q 021278 7 EMRCVRRKLLLETLAKELPSGTIRYSSQVVSIEESGHFKLLHLADGTILKTKVLIGCDGVNSI 69 (315)
Q Consensus 7 ~~~~i~R~~L~~~L~~~~~~~~i~~~~~v~~~~~~~~~~~v~~~~g~~~~ad~vVgADG~~S~ 69 (315)
+.+.|+-.+|....- .++.+..|.+|+.+..++.. |.+.||.+|.+|=..-|.|..-+
T Consensus 255 d~FfvspeDLp~~~n---GGvAvl~G~kvvkid~~d~~--V~LnDG~~I~YdkcLIATG~~Pk 312 (659)
T KOG1346|consen 255 DGFFVSPEDLPKAVN---GGVAVLRGRKVVKIDEEDKK--VILNDGTTIGYDKCLIATGVRPK 312 (659)
T ss_pred CcceeChhHCccccc---CceEEEeccceEEeecccCe--EEecCCcEeehhheeeecCcCcc
Confidence 445566666653322 35899999999999887764 88899999999888888897643
No 255
>PF00732 GMC_oxred_N: GMC oxidoreductase; InterPro: IPR000172 The glucose-methanol-choline (GMC) oxidoreductases are FAD flavoproteins oxidoreductases [, ]. These enzymes include a variety of proteins; choline dehydrogenase (CHD), methanol oxidase (MOX) and cellobiose dehydrogenase (1.1.99.18 from EC) [] which share a number of regions of sequence similarities. One of these regions, located in the N-terminal section, corresponds to the FAD ADP- binding domain. The function of the other conserved domains is not yet known.; GO: 0016614 oxidoreductase activity, acting on CH-OH group of donors, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 3Q9T_B 1B4V_A 3GYJ_A 1CBO_A 1B8S_A 1N4V_A 1N4W_A 3CNJ_A 1IJH_A 2GEW_A ....
Probab=43.38 E-value=69 Score=27.60 Aligned_cols=56 Identities=23% Similarity=0.207 Sum_probs=36.2
Q ss_pred HHHHHHHHhhC--CCCcEEecceEEEEEee--CCe-eEEEe--cCCC----EEeecEEEecCCCchh
Q 021278 14 KLLLETLAKEL--PSGTIRYSSQVVSIEES--GHF-KLLHL--ADGT----ILKTKVLIGCDGVNSI 69 (315)
Q Consensus 14 ~~L~~~L~~~~--~~~~i~~~~~v~~~~~~--~~~-~~v~~--~~g~----~~~ad~vVgADG~~S~ 69 (315)
......|..+. ++.+|+.+++|.+|..+ +.+ ..|++ .++. .+.++.||-|=|+-..
T Consensus 193 s~~~~~L~~a~~~~n~~l~~~~~V~~i~~~~~~~~a~gV~~~~~~~~~~~~~~~ak~VIlaAGai~T 259 (296)
T PF00732_consen 193 SAATTYLPPALKRPNLTLLTNARVTRIIFDGDGGRATGVEYVDNDGGVQRRIVAAKEVILAAGAIGT 259 (296)
T ss_dssp HHHHHHHHHHTTTTTEEEEESEEEEEEEEETTSTEEEEEEEEETTTSEEEEEEEEEEEEE-SHHHHH
T ss_pred ehhhcccchhhccCCccEEcCcEEEEEeeeccccceeeeeeeecCCcceeeeccceeEEeccCCCCC
Confidence 34444555544 46999999999999765 333 33444 4443 5678999999997443
No 256
>PRK12844 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=42.88 E-value=93 Score=29.99 Aligned_cols=55 Identities=7% Similarity=0.093 Sum_probs=35.5
Q ss_pred HHHHHHHhhC--CCCcEEecceEEEEEeeCCee-EEEe-cCCC--EEeec-EEEecCCCchh
Q 021278 15 LLLETLAKEL--PSGTIRYSSQVVSIEESGHFK-LLHL-ADGT--ILKTK-VLIGCDGVNSI 69 (315)
Q Consensus 15 ~L~~~L~~~~--~~~~i~~~~~v~~~~~~~~~~-~v~~-~~g~--~~~ad-~vVgADG~~S~ 69 (315)
.|...|.+++ .+++|+++++|+++..+++.| .|.. .+++ .+.|+ -||-|.|-.+.
T Consensus 209 ~l~~~l~~~~~~~gv~i~~~~~v~~Li~~~g~v~Gv~~~~~g~~~~i~A~~aVIlAtGG~~~ 270 (557)
T PRK12844 209 ALIGRMLEAALAAGVPLWTNTPLTELIVEDGRVVGVVVVRDGREVLIRARRGVLLASGGFGH 270 (557)
T ss_pred HHHHHHHHHHHhCCCEEEeCCEEEEEEEeCCEEEEEEEEECCeEEEEEecceEEEecCCccC
Confidence 3555565554 459999999999998776542 2333 3443 57884 46666665554
No 257
>PRK12835 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=42.59 E-value=82 Score=30.56 Aligned_cols=45 Identities=9% Similarity=0.008 Sum_probs=31.1
Q ss_pred CCCcEEecceEEEEEeeCC-ee-EEEe-cCCC--EEeec-EEEecCCCchh
Q 021278 25 PSGTIRYSSQVVSIEESGH-FK-LLHL-ADGT--ILKTK-VLIGCDGVNSI 69 (315)
Q Consensus 25 ~~~~i~~~~~v~~~~~~~~-~~-~v~~-~~g~--~~~ad-~vVgADG~~S~ 69 (315)
.+++|+++++++++..+++ .| -|.. .++. .++|+ -||-|.|-.+.
T Consensus 226 ~gv~i~~~~~~~~Li~d~~g~V~Gv~~~~~~~~~~i~a~~aVilAtGGf~~ 276 (584)
T PRK12835 226 AGVPLWLDSPMTELITDPDGAVVGAVVEREGRTLRIGARRGVILATGGFDH 276 (584)
T ss_pred CCceEEeCCEEEEEEECCCCcEEEEEEEeCCcEEEEEeceeEEEecCcccC
Confidence 4599999999999998644 32 2333 3343 57886 47778887764
No 258
>KOG0029 consensus Amine oxidase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=42.38 E-value=62 Score=30.71 Aligned_cols=41 Identities=10% Similarity=0.045 Sum_probs=33.8
Q ss_pred CCcEEecceEEEEEeeCCe-eEEEecCCCEEeecEEEecCCC
Q 021278 26 SGTIRYSSQVVSIEESGHF-KLLHLADGTILKTKVLIGCDGV 66 (315)
Q Consensus 26 ~~~i~~~~~v~~~~~~~~~-~~v~~~~g~~~~ad~vVgADG~ 66 (315)
+..|++++.|..|...+++ +.+++.++..+.+|+||.+==.
T Consensus 228 ~l~I~~~~~v~~i~~~~~~~~~~~~~~~~~~~~d~vvvt~pl 269 (501)
T KOG0029|consen 228 GLDIHLNKRVRKIKYGDDGAVKVTVETGDGYEADAVVVTVPL 269 (501)
T ss_pred CcceeeceeeEEEEEecCCceEEEEECCCeeEeeEEEEEccH
Confidence 5899999999999988776 5677788777999999887543
No 259
>KOG0174 consensus 20S proteasome, regulatory subunit beta type PSMB6/PSMB9/PRE3 [Posttranslational modification, protein turnover, chaperones]
Probab=41.81 E-value=36 Score=27.46 Aligned_cols=19 Identities=16% Similarity=0.443 Sum_probs=16.1
Q ss_pred CCCcEEecceEEEEEeeCC
Q 021278 25 PSGTIRYSSQVVSIEESGH 43 (315)
Q Consensus 25 ~~~~i~~~~~v~~~~~~~~ 43 (315)
|..++..|+++..++.+++
T Consensus 12 ~~~evstGTTImAv~y~gG 30 (224)
T KOG0174|consen 12 PKEEVSTGTTIMAVEYDGG 30 (224)
T ss_pred cccccccCceEEEEEEcCc
Confidence 5568999999999998776
No 260
>KOG4254 consensus Phytoene desaturase [Coenzyme transport and metabolism]
Probab=41.52 E-value=41 Score=31.29 Aligned_cols=50 Identities=24% Similarity=0.197 Sum_probs=42.6
Q ss_pred CCCcEEecceEEEEEeeCCe-eEEEecCCCEEeecEEEecCCCchhhhhhh
Q 021278 25 PSGTIRYSSQVVSIEESGHF-KLLHLADGTILKTKVLIGCDGVNSIVAKWL 74 (315)
Q Consensus 25 ~~~~i~~~~~v~~~~~~~~~-~~v~~~~g~~~~ad~vVgADG~~S~vr~~l 74 (315)
.+.+|.+..+|.+|..+.+. +-|.++||++++++.||-=-+.+-+.-+.+
T Consensus 277 ~GaeI~tka~Vq~Illd~gka~GV~L~dG~ev~sk~VvSNAt~~~Tf~kLl 327 (561)
T KOG4254|consen 277 AGAEIFTKATVQSILLDSGKAVGVRLADGTEVRSKIVVSNATPWDTFEKLL 327 (561)
T ss_pred ccceeeehhhhhheeccCCeEEEEEecCCcEEEeeeeecCCchHHHHHHhC
Confidence 35899999999999988755 679999999999999998888887766666
No 261
>PRK13977 myosin-cross-reactive antigen; Provisional
Probab=41.38 E-value=81 Score=30.48 Aligned_cols=54 Identities=20% Similarity=0.318 Sum_probs=36.3
Q ss_pred HHHHHHHHhhC--CCCcEEecceEEEEEee-CC--e--eEEEec-CCC-----EEeecEEEecCCCc
Q 021278 14 KLLLETLAKEL--PSGTIRYSSQVVSIEES-GH--F--KLLHLA-DGT-----ILKTKVLIGCDGVN 67 (315)
Q Consensus 14 ~~L~~~L~~~~--~~~~i~~~~~v~~~~~~-~~--~--~~v~~~-~g~-----~~~ad~vVgADG~~ 67 (315)
..|..-|.+.+ .+++++++++|+++..+ ++ + ..|.+. +|. ....|+||.+.|..
T Consensus 226 eSLV~PL~~~Le~~GV~f~~~t~VtdL~~~~d~~~~~VtgI~~~~~~~~~~I~l~~~DlVivTnGs~ 292 (576)
T PRK13977 226 ESLVLPLIKYLEDHGVDFQYGTKVTDIDFDITGGKKTATAIHLTRNGKEETIDLTEDDLVFVTNGSI 292 (576)
T ss_pred hHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCCCceEEEEEEEEeCCceeEEEecCCCEEEEeCCcC
Confidence 44555555554 46999999999999875 22 2 234443 332 35689999999965
No 262
>PRK08958 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=40.67 E-value=1e+02 Score=29.88 Aligned_cols=57 Identities=16% Similarity=0.118 Sum_probs=41.1
Q ss_pred HHHHHHHHhhC--CCCcEEecceEEEEEee-CCee-EEE---ecCCC--EEeecEEEecCCCchhh
Q 021278 14 KLLLETLAKEL--PSGTIRYSSQVVSIEES-GHFK-LLH---LADGT--ILKTKVLIGCDGVNSIV 70 (315)
Q Consensus 14 ~~L~~~L~~~~--~~~~i~~~~~v~~~~~~-~~~~-~v~---~~~g~--~~~ad~vVgADG~~S~v 70 (315)
..|...|.+++ .+++++.++.++++..+ ++.+ -|. ..+|. .+.|+-||-|.|-.+.+
T Consensus 143 ~~i~~~L~~~~~~~gi~i~~~~~~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVILATGG~~~~ 208 (588)
T PRK08958 143 HALLHTLYQQNLKNHTTIFSEWYALDLVKNQDGAVVGCTAICIETGEVVYFKARATVLATGGAGRI 208 (588)
T ss_pred HHHHHHHHHHhhhcCCEEEeCcEEEEEEECCCCEEEEEEEEEcCCCcEEEEEcCeEEECCCCcccc
Confidence 45677777755 45899999999999875 3432 232 23554 68899999999998754
No 263
>PLN02172 flavin-containing monooxygenase FMO GS-OX
Probab=40.42 E-value=32 Score=32.28 Aligned_cols=40 Identities=13% Similarity=0.362 Sum_probs=29.1
Q ss_pred CCcEEecceEEEEEeeCCeeEEEecCCCEEeecEEEecCCCch
Q 021278 26 SGTIRYSSQVVSIEESGHFKLLHLADGTILKTKVLIGCDGVNS 68 (315)
Q Consensus 26 ~~~i~~~~~v~~~~~~~~~~~v~~~~g~~~~ad~vVgADG~~S 68 (315)
...+..+..+..+..+ + .|.|+||+++.+|.||-|-|..-
T Consensus 249 ~~~v~~~~~I~~~~~~-g--~V~f~DG~~~~~D~Ii~~TGy~~ 288 (461)
T PLN02172 249 QNNLWMHSEIDTAHED-G--SIVFKNGKVVYADTIVHCTGYKY 288 (461)
T ss_pred CCceEECCcccceecC-C--eEEECCCCCccCCEEEECCcCCc
Confidence 3456666666554432 2 38899999999999999999864
No 264
>PRK05675 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=40.23 E-value=99 Score=29.92 Aligned_cols=57 Identities=18% Similarity=0.122 Sum_probs=41.3
Q ss_pred HHHHHHHHhhC--CCCcEEecceEEEEEeeC-Cee-EEE---ecCCC--EEeecEEEecCCCchhh
Q 021278 14 KLLLETLAKEL--PSGTIRYSSQVVSIEESG-HFK-LLH---LADGT--ILKTKVLIGCDGVNSIV 70 (315)
Q Consensus 14 ~~L~~~L~~~~--~~~~i~~~~~v~~~~~~~-~~~-~v~---~~~g~--~~~ad~vVgADG~~S~v 70 (315)
..+...|.+.+ .+++|+.++.++++..++ +.+ -|. ..+|+ .+.|+-||-|.|-.+.+
T Consensus 126 ~~i~~~L~~~~~~~gi~i~~~~~~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG~~~~ 191 (570)
T PRK05675 126 HALLHTLYQGNLKNGTTFLNEWYAVDLVKNQDGAVVGVIAICIETGETVYIKSKATVLATGGAGRI 191 (570)
T ss_pred HHHHHHHHHHHhccCCEEEECcEEEEEEEcCCCeEEEEEEEEcCCCcEEEEecCeEEECCCCcccc
Confidence 45677777765 459999999999998753 332 232 24564 68899999999988754
No 265
>PRK12845 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=39.54 E-value=1.1e+02 Score=29.57 Aligned_cols=57 Identities=12% Similarity=0.070 Sum_probs=36.9
Q ss_pred HHHHHHhhC--CCCcEEecceEEEEEeeCCee-EEEe-cCCC--EEee-cEEEecCCCchhhhh
Q 021278 16 LLETLAKEL--PSGTIRYSSQVVSIEESGHFK-LLHL-ADGT--ILKT-KVLIGCDGVNSIVAK 72 (315)
Q Consensus 16 L~~~L~~~~--~~~~i~~~~~v~~~~~~~~~~-~v~~-~~g~--~~~a-d~vVgADG~~S~vr~ 72 (315)
|...|.+++ .+++|+++++++++..+++.| -|.. .++. .+.+ +-||-|.|-.+...+
T Consensus 219 l~~~L~~~~~~~Gv~i~~~t~v~~Li~~~g~V~GV~~~~~g~~~~i~a~kaVILAtGGf~~n~e 282 (564)
T PRK12845 219 LAAGLFAGVLRAGIPIWTETSLVRLTDDGGRVTGAVVDHRGREVTVTARRGVVLAAGGFDHDME 282 (564)
T ss_pred HHHHHHHHHHHCCCEEEecCEeeEEEecCCEEEEEEEEECCcEEEEEcCCEEEEecCCccccHH
Confidence 344555544 469999999999998654443 2322 2343 4666 578888888876543
No 266
>PRK12839 hypothetical protein; Provisional
Probab=39.02 E-value=1.2e+02 Score=29.48 Aligned_cols=58 Identities=14% Similarity=0.102 Sum_probs=36.5
Q ss_pred eHHHHHHHHHhhC--CCCcEEecceEEEEEeeC-Ce---eEEEecCCC-EEee-cEEEecCCCchh
Q 021278 12 RRKLLLETLAKEL--PSGTIRYSSQVVSIEESG-HF---KLLHLADGT-ILKT-KVLIGCDGVNSI 69 (315)
Q Consensus 12 ~R~~L~~~L~~~~--~~~~i~~~~~v~~~~~~~-~~---~~v~~~~g~-~~~a-d~vVgADG~~S~ 69 (315)
.-..|...|.+.+ .+++|+.+++++++..++ ++ |.+.-.++. ++.+ +-||-|.|-.+.
T Consensus 212 ~g~~l~~~L~~~a~~~Gv~i~~~t~v~~Li~~~~g~V~GV~~~~~~g~~~i~aak~VVLAtGGf~~ 277 (572)
T PRK12839 212 NGTALTGRLLRSADDLGVDLRVSTSATSLTTDKNGRVTGVRVQGPDGAVTVEATRGVVLATGGFPN 277 (572)
T ss_pred cHHHHHHHHHHHHHHCCCEEEcCCEEEEEEECCCCcEEEEEEEeCCCcEEEEeCCEEEEcCCCccc
Confidence 3445666676665 459999999999997653 33 333333454 4444 667667766654
No 267
>PRK08626 fumarate reductase flavoprotein subunit; Provisional
Probab=37.46 E-value=1.2e+02 Score=29.98 Aligned_cols=55 Identities=13% Similarity=0.193 Sum_probs=38.9
Q ss_pred HHHHHHhhC--CCCcEEecceEEEEEeeCCe---eEEE-ecCCC--EEeecEEEecCCCchhh
Q 021278 16 LLETLAKEL--PSGTIRYSSQVVSIEESGHF---KLLH-LADGT--ILKTKVLIGCDGVNSIV 70 (315)
Q Consensus 16 L~~~L~~~~--~~~~i~~~~~v~~~~~~~~~---~~v~-~~~g~--~~~ad~vVgADG~~S~v 70 (315)
+...|.+++ .+++|+.++.++++..+++. +.+. ..+|+ .+.|+-||-|.|-.+.+
T Consensus 160 l~~~L~~~~~~~gv~i~~~~~~~~Li~~~g~v~Gv~~~~~~~G~~~~i~AkaVVLATGG~g~~ 222 (657)
T PRK08626 160 MLYAVDNEAIKLGVPVHDRKEAIALIHDGKRCYGAVVRCLITGELRAYVAKATLIATGGYGRI 222 (657)
T ss_pred HHHHHHHHHHhCCCEEEeeEEEEEEEEECCEEEEEEEEEcCCCcEEEEEcCeEEECCCcccCC
Confidence 444555544 46999999999999876654 3333 24564 57899999999977754
No 268
>PF10387 DUF2442: Protein of unknown function (DUF2442); InterPro: IPR018841 Several proteins in this entry are annotated as being putative molybdopterin-guanine dinucleotide biosynthesis proteins, but this has not been confirmed. The function of these proteins is therefore not known. ; PDB: 2AUW_B 2X8N_A 3K8R_B.
Probab=37.28 E-value=60 Score=21.79 Aligned_cols=25 Identities=12% Similarity=0.190 Sum_probs=17.7
Q ss_pred EEEEEeeCC-eeEEEecCCCEEeecE
Q 021278 35 VVSIEESGH-FKLLHLADGTILKTKV 59 (315)
Q Consensus 35 v~~~~~~~~-~~~v~~~~g~~~~ad~ 59 (315)
|++|...++ .+.|+|+||++...|+
T Consensus 1 i~~V~~~~~~~L~v~f~dG~~~~~dl 26 (79)
T PF10387_consen 1 IISVKPLDDYRLRVTFSDGETRIFDL 26 (79)
T ss_dssp -EEEEEETTTEEEEEETTS-EEEEEC
T ss_pred CeEEEEcCCcEEEEEEcCCCEEEEEh
Confidence 467777777 7899999998766554
No 269
>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form. This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=36.66 E-value=1e+02 Score=32.15 Aligned_cols=46 Identities=17% Similarity=0.152 Sum_probs=34.1
Q ss_pred CCCcEEecceEEEEEeeCCeeEEEec----CCCEEeecEEEecCCCchhh
Q 021278 25 PSGTIRYSSQVVSIEESGHFKLLHLA----DGTILKTKVLIGCDGVNSIV 70 (315)
Q Consensus 25 ~~~~i~~~~~v~~~~~~~~~~~v~~~----~g~~~~ad~vVgADG~~S~v 70 (315)
.+++++.++.++.+..++....|.++ +++++.||.|+-+-|....+
T Consensus 364 ~GV~i~~~~~v~~i~g~~~v~~V~l~~~~g~~~~i~~D~V~va~G~~Pnt 413 (985)
T TIGR01372 364 LGIEVLTGHVVAATEGGKRVSGVAVARNGGAGQRLEADALAVSGGWTPVV 413 (985)
T ss_pred cCCEEEcCCeEEEEecCCcEEEEEEEecCCceEEEECCEEEEcCCcCchh
Confidence 36999999999999765432234443 34689999999999987654
No 270
>PF01356 A_amylase_inhib: Alpha amylase inhibitor; InterPro: IPR000833 Alpha-amylase inhibitor inhibits mammalian alpha-amylases specifically, by forming a tight stoichiometric 1:1 complex with alpha-amylase. The inhibitor has no action on plant and microbial alpha amylases. A crystal structure has been determined for tendamistat, the 74-amino acid inhibitor produced by Streptomyces tendae that targets a wide range of mammalian alpha-amylases []. The binding of tendamistat to alpha-amylase leads to the steric blockage of the active site of the enzyme. The crystal structure of tendamistat revealed an immunoglobulin-like fold that could potentially adopt multiple conformations. Such molecular flexibility could enable an induced-fit type of binding that would both optimise binding and allow broad target specificity. More information about this protein can be found at Protein of the Month: alpha-Amylase [].; GO: 0015066 alpha-amylase inhibitor activity; PDB: 2KER_A 3AIT_A 1BVN_T 1HOE_A 4AIT_A 2AIT_A 1OK0_A.
Probab=36.29 E-value=1.1e+02 Score=19.94 Aligned_cols=37 Identities=14% Similarity=0.161 Sum_probs=25.1
Q ss_pred CCC-CcEEecceEEEEEeeC-C--eeEEEecCCCEEeecEE
Q 021278 24 LPS-GTIRYSSQVVSIEESG-H--FKLLHLADGTILKTKVL 60 (315)
Q Consensus 24 ~~~-~~i~~~~~v~~~~~~~-~--~~~v~~~~g~~~~ad~v 60 (315)
+|. +++..+.+.+.+..+- + .++|.+.||+...++.+
T Consensus 4 APaCV~~~qsWRYT~v~N~Ca~tvsVtV~Y~dG~~~PCrv~ 44 (68)
T PF01356_consen 4 APACVEYYQSWRYTDVTNGCADTVSVTVEYTDGQEVPCRVI 44 (68)
T ss_dssp SSTTEEEEE-SSEEEEEE-SSS-EEEEEEETTS-CEEEEEE
T ss_pred CceeEEEecceEEEEeeCCCcccEEEEEEEeCCCcceeEEe
Confidence 355 7888999999998763 3 37788899987766554
No 271
>TIGR01810 betA choline dehydrogenase. This enzyme is a member of the GMC oxidoreductase family (pfam00732 and pfam05199), sharing a common evoluntionary origin and enzymatic reaction with alcohol dehydrogenase. Outgrouping from this model, Caulobacter crescentus shares sequence homology with choline dehydrogenase, yet other genes participating in this enzymatic reaction have not currently been identified.
Probab=35.87 E-value=80 Score=30.14 Aligned_cols=53 Identities=21% Similarity=0.207 Sum_probs=36.0
Q ss_pred HHHHHHhhC--CCCcEEecceEEEEEeeCCe-eEEEecCC-C---EEeecEEEecCCC-ch
Q 021278 16 LLETLAKEL--PSGTIRYSSQVVSIEESGHF-KLLHLADG-T---ILKTKVLIGCDGV-NS 68 (315)
Q Consensus 16 L~~~L~~~~--~~~~i~~~~~v~~~~~~~~~-~~v~~~~g-~---~~~ad~vVgADG~-~S 68 (315)
....|.... ++++|+.+++|.+|..+++. +.|.+.++ . .+.++.||-|=|+ .|
T Consensus 196 ~~~~l~~a~~r~nl~i~~~~~V~rI~~~~~ra~GV~~~~~~~~~~~~~ak~VIlaAGai~S 256 (532)
T TIGR01810 196 ARAYLHPAMKRPNLEVQTRAFVTKINFEGNRATGVEFKKGGRKEHTEANKEVILSAGAINS 256 (532)
T ss_pred HHHHhhhhccCCCeEEEeCCEEEEEEecCCeEEEEEEEeCCcEEEEEEeeeEEEccCCCCC
Confidence 444444332 56999999999999987654 33555332 2 3578999999997 54
No 272
>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.
Probab=32.44 E-value=1.3e+02 Score=28.00 Aligned_cols=40 Identities=13% Similarity=0.053 Sum_probs=27.3
Q ss_pred CCCcEEecceEEEEEeeCCeeEEEecCCCEEeecEEEecCCCch
Q 021278 25 PSGTIRYSSQVVSIEESGHFKLLHLADGTILKTKVLIGCDGVNS 68 (315)
Q Consensus 25 ~~~~i~~~~~v~~~~~~~~~~~v~~~~g~~~~ad~vVgADG~~S 68 (315)
.++++..+ ++..+. .+.+.|. .+|+++++|.||-|.|..-
T Consensus 103 ~gV~~~~g-~~~~v~--~~~v~v~-~~g~~~~~d~lIiATGs~p 142 (446)
T TIGR01424 103 AGVELLEG-RARLVG--PNTVEVL-QDGTTYTAKKILIAVGGRP 142 (446)
T ss_pred CCcEEEEE-EEEEec--CCEEEEe-cCCeEEEcCEEEEecCCcC
Confidence 35777776 555553 3344443 4677899999999999764
No 273
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=32.14 E-value=66 Score=28.73 Aligned_cols=36 Identities=33% Similarity=0.442 Sum_probs=28.2
Q ss_pred CCcEEEeccCCCCCCCCCccchhhhhhHHHHHHHHHHHHHh
Q 021278 192 RGSVCVAGDALHPMTPDIGQGGCAALEDGIVLARCINEALK 232 (315)
Q Consensus 192 ~~~v~LiGDAAh~~~P~~G~G~~~al~da~~La~~l~~~~~ 232 (315)
..+|..+||+++. |. =+..|+.++..++..|.+.+.
T Consensus 315 ~~~vyaiGD~~~~--~~---~~~~A~~~g~~aa~~i~~~l~ 350 (352)
T PRK12770 315 REGVFAAGDVVTG--PS---KIGKAIKSGLRAAQSIHEWLD 350 (352)
T ss_pred CCCEEEEcccccC--cc---hHHHHHHHHHHHHHHHHHHHh
Confidence 4699999999874 22 257899999999998877664
No 274
>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]
Probab=32.04 E-value=1e+02 Score=28.40 Aligned_cols=40 Identities=30% Similarity=0.380 Sum_probs=32.8
Q ss_pred CCCcEEEeccCCCCCC----CCCccchhhhhhHHHHHHHHHHHHHhc
Q 021278 191 SRGSVCVAGDALHPMT----PDIGQGGCAALEDGIVLARCINEALKT 233 (315)
Q Consensus 191 ~~~~v~LiGDAAh~~~----P~~G~G~~~al~da~~La~~l~~~~~~ 233 (315)
....|+.+||.|.+.+ |.++| .|++.+..+++.|.+.+.+
T Consensus 290 ~~~~IFa~GD~A~~~~~~p~P~tAQ---~A~Qqg~~~a~ni~~~l~g 333 (405)
T COG1252 290 GHPDIFAAGDCAAVIDPRPVPPTAQ---AAHQQGEYAAKNIKARLKG 333 (405)
T ss_pred CCCCeEEEeccccCCCCCCCCChhH---HHHHHHHHHHHHHHHHhcC
Confidence 4568999999999987 45554 6788899999999887776
No 275
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=31.76 E-value=96 Score=29.08 Aligned_cols=37 Identities=27% Similarity=0.205 Sum_probs=28.7
Q ss_pred CCcEEEeccCCCCCCCCCccchhhhhhHHHHHHHHHHHHHhc
Q 021278 192 RGSVCVAGDALHPMTPDIGQGGCAALEDGIVLARCINEALKT 233 (315)
Q Consensus 192 ~~~v~LiGDAAh~~~P~~G~G~~~al~da~~La~~l~~~~~~ 233 (315)
..+|+.+||+++. | .-+..|+.++..+|..|.+.+.+
T Consensus 430 ~~gVfa~GD~~~g--~---~~~~~Av~~G~~AA~~i~~~L~g 466 (471)
T PRK12810 430 NPKVFAAGDMRRG--Q---SLVVWAIAEGRQAARAIDAYLMG 466 (471)
T ss_pred CCCEEEccccCCC--c---hhHHHHHHHHHHHHHHHHHHHhc
Confidence 4589999999872 1 13567999999999999887765
No 276
>PRK12834 putative FAD-binding dehydrogenase; Reviewed
Probab=31.65 E-value=2e+02 Score=27.67 Aligned_cols=49 Identities=12% Similarity=0.029 Sum_probs=35.4
Q ss_pred CCcEEecceEEEEEeeCCee-EEEe---cC--------------C-CEEeecEEEecCCCchhhhhhh
Q 021278 26 SGTIRYSSQVVSIEESGHFK-LLHL---AD--------------G-TILKTKVLIGCDGVNSIVAKWL 74 (315)
Q Consensus 26 ~~~i~~~~~v~~~~~~~~~~-~v~~---~~--------------g-~~~~ad~vVgADG~~S~vr~~l 74 (315)
+++++++++++++..+++.| -|.. ++ + ..+.|+-||-|.|-.+...+.+
T Consensus 166 gv~i~~~t~~~~Li~~~g~V~Gv~~~~~~~~~~~~~~~~~~~~~~~~~i~AkaVILATGGf~~n~em~ 233 (549)
T PRK12834 166 LVRFRFRHRVDELVVTDGAVTGVRGTVLEPSDAERGEASSREVVGEFELRAQAVIVTSGGIGGNHELV 233 (549)
T ss_pred CceEEecCEeeEEEEeCCEEEEEEEEecccccccccccccccccceEEEecCEEEEeCCCcccCHHHH
Confidence 59999999999998765543 2332 11 1 2688999999999888765444
No 277
>COG0029 NadB Aspartate oxidase [Coenzyme metabolism]
Probab=31.63 E-value=69 Score=30.12 Aligned_cols=58 Identities=12% Similarity=0.122 Sum_probs=42.0
Q ss_pred HHHHHHHhhC---CCCcEEecceEEEEEeeCC-ee-EEEe--cCC--CEEeecEEEecCCCchhhhh
Q 021278 15 LLLETLAKEL---PSGTIRYSSQVVSIEESGH-FK-LLHL--ADG--TILKTKVLIGCDGVNSIVAK 72 (315)
Q Consensus 15 ~L~~~L~~~~---~~~~i~~~~~v~~~~~~~~-~~-~v~~--~~g--~~~~ad~vVgADG~~S~vr~ 72 (315)
.+...|.+++ |+++|..++.+..+..+++ .+ -|.+ .++ .++.++.||-|.|--+.+=+
T Consensus 134 ~I~~~L~~~v~~~p~I~v~e~~~a~~li~~~~~~~~Gv~~~~~~~~~~~~~a~~vVLATGG~g~ly~ 200 (518)
T COG0029 134 EIMTALLKKVRNRPNITVLEGAEALDLIIEDGIGVAGVLVLNRNGELGTFRAKAVVLATGGLGGLYA 200 (518)
T ss_pred HHHHHHHHHHhcCCCcEEEecchhhhhhhcCCceEeEEEEecCCCeEEEEecCeEEEecCCCccccc
Confidence 4455566655 7899999999999988877 33 3443 333 47899999999998777643
No 278
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=31.10 E-value=1.2e+02 Score=27.15 Aligned_cols=45 Identities=16% Similarity=0.059 Sum_probs=31.5
Q ss_pred CCCcEEecceEEEEEeeCCeeEEEec------------------C--CCEEeecEEEecCCCchh
Q 021278 25 PSGTIRYSSQVVSIEESGHFKLLHLA------------------D--GTILKTKVLIGCDGVNSI 69 (315)
Q Consensus 25 ~~~~i~~~~~v~~~~~~~~~~~v~~~------------------~--g~~~~ad~vVgADG~~S~ 69 (315)
.++++++++.+++++.++.-..|++. + ++++.+|.||-|-|....
T Consensus 223 ~gi~i~~~~~v~~i~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~D~vi~a~G~~p~ 287 (352)
T PRK12770 223 RGVEFLELVTPVRIIGEGRVEGVELAKMRLGEPDESGRPRPVPIPGSEFVLEADTVVFAIGEIPT 287 (352)
T ss_pred cCCEEeeccCceeeecCCcEeEEEEEEEEecCcCcccCcCceecCCCeEEEECCEEEECcccCCC
Confidence 36999999999998754322223321 2 247999999999998753
No 279
>COG0445 GidA Flavin-dependent tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Cell cycle control, cell division, chromosome partitioning]
Probab=30.28 E-value=50 Score=31.55 Aligned_cols=62 Identities=16% Similarity=0.087 Sum_probs=43.4
Q ss_pred CccceeeeHHHHHHHHHhhC--------CCCcEEecceEEEEEee-CCe-eEEEecCCCEEeecEEEecCCCc
Q 021278 5 EHEMRCVRRKLLLETLAKEL--------PSGTIRYSSQVVSIEES-GHF-KLLHLADGTILKTKVLIGCDGVN 67 (315)
Q Consensus 5 ~~~~~~i~R~~L~~~L~~~~--------~~~~i~~~~~v~~~~~~-~~~-~~v~~~~g~~~~ad~vVgADG~~ 67 (315)
-.+...-.|...|+.|+++. ++..|+.+ .|+++..+ ++. +.|..++|..+.|+.||-+.|.+
T Consensus 86 KGPAVra~RaQaDk~~Y~~~mk~~le~~~NL~l~q~-~v~dli~e~~~~v~GV~t~~G~~~~a~aVVlTTGTF 157 (621)
T COG0445 86 KGPAVRAPRAQADKWLYRRAMKNELENQPNLHLLQG-EVEDLIVEEGQRVVGVVTADGPEFHAKAVVLTTGTF 157 (621)
T ss_pred CcchhcchhhhhhHHHHHHHHHHHHhcCCCceehHh-hhHHHhhcCCCeEEEEEeCCCCeeecCEEEEeeccc
Confidence 44455556777777776643 55777764 45566554 433 56888999999999999999986
No 280
>PRK05976 dihydrolipoamide dehydrogenase; Validated
Probab=30.25 E-value=1.6e+02 Score=27.62 Aligned_cols=42 Identities=10% Similarity=-0.011 Sum_probs=30.3
Q ss_pred CCcEEecceEEEEEee-----CCeeEEEecCC--CEEeecEEEecCCCch
Q 021278 26 SGTIRYSSQVVSIEES-----GHFKLLHLADG--TILKTKVLIGCDGVNS 68 (315)
Q Consensus 26 ~~~i~~~~~v~~~~~~-----~~~~~v~~~~g--~~~~ad~vVgADG~~S 68 (315)
+++++.|. ++.+..+ ++.+.|...+| .++++|.||-|.|...
T Consensus 106 gv~~~~g~-a~~i~~~~~~~~~~~~~v~~~~g~~~~~~~d~lViATGs~p 154 (472)
T PRK05976 106 KIDVFHGI-GRILGPSIFSPMPGTVSVETETGENEMIIPENLLIATGSRP 154 (472)
T ss_pred CCEEEEEE-EEEeCCCCCcCCceEEEEEeCCCceEEEEcCEEEEeCCCCC
Confidence 57888864 4445433 22577877777 4799999999999865
No 281
>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]
Probab=30.08 E-value=1.7e+02 Score=26.46 Aligned_cols=61 Identities=18% Similarity=0.273 Sum_probs=45.8
Q ss_pred HHHHHHHHhhCCC--CcEEecceEEEEEee---CCeeEEEecCCCEEeecEEEecCCCchhhhhhhCCC
Q 021278 14 KLLLETLAKELPS--GTIRYSSQVVSIEES---GHFKLLHLADGTILKTKVLIGCDGVNSIVAKWLGFK 77 (315)
Q Consensus 14 ~~L~~~L~~~~~~--~~i~~~~~v~~~~~~---~~~~~v~~~~g~~~~ad~vVgADG~~S~vr~~l~~~ 77 (315)
..|-..|.+++.. +++....+.++++.- ++-..|++++|...+++-||-+.|++ =|.++.+
T Consensus 266 pkl~~ale~Hv~~Y~vDimn~qra~~l~~a~~~~~l~ev~l~nGavLkaktvIlstGAr---WRn~nvP 331 (520)
T COG3634 266 PKLAAALEAHVKQYDVDVMNLQRASKLEPAAVEGGLIEVELANGAVLKARTVILATGAR---WRNMNVP 331 (520)
T ss_pred hHHHHHHHHHHhhcCchhhhhhhhhcceecCCCCccEEEEecCCceeccceEEEecCcc---hhcCCCC
Confidence 4566666666643 788888888888763 33488999999999999999999985 3456555
No 282
>PRK06467 dihydrolipoamide dehydrogenase; Reviewed
Probab=30.05 E-value=1.5e+02 Score=27.84 Aligned_cols=41 Identities=17% Similarity=0.090 Sum_probs=28.7
Q ss_pred CCCcEEecceEEEEEeeCCeeEEEecCC--CEEeecEEEecCCCch
Q 021278 25 PSGTIRYSSQVVSIEESGHFKLLHLADG--TILKTKVLIGCDGVNS 68 (315)
Q Consensus 25 ~~~~i~~~~~v~~~~~~~~~~~v~~~~g--~~~~ad~vVgADG~~S 68 (315)
.+++++.+.-. - .++..+.|...+| .++++|.||-|.|...
T Consensus 106 ~gV~~~~g~a~-~--~~~~~v~v~~~~g~~~~~~~d~lViATGs~p 148 (471)
T PRK06467 106 RKVTVVNGLGK-F--TGGNTLEVTGEDGKTTVIEFDNAIIAAGSRP 148 (471)
T ss_pred CCCEEEEEEEE-E--ccCCEEEEecCCCceEEEEcCEEEEeCCCCC
Confidence 35788876422 2 2455677776666 4799999999999864
No 283
>PF00996 GDI: GDP dissociation inhibitor; InterPro: IPR018203 Rab proteins constitute a family of small GTPases that serve a regulatory role in vesicular membrane traffic [, ]; C-terminal geranylgeranylation is crucial for their membrane association and function. This post-translational modification is catalysed by Rab geranylgeranyl transferase (Rab-GGTase), a multi-subunit enzyme that contains a catalytic heterodimer and an accessory component, termed Rab escort protein (REP)-1 []. REP-1 presents newly- synthesised Rab proteins to the catalytic component, and forms a stable complex with the prenylated proteins following the transfer reaction. The mechanism of REP-1-mediated membrane association of Rab5 is similar to that mediated by Rab GDP dissociation inhibitor (GDI). REP-1 and Rab GDI also share other functional properties, including the ability to inhibit the release of GDP and to remove Rab proteins from membranes. The crystal structure of the bovine alpha-isoform of Rab GDI has been determined to a resolution of 1.81A []. The protein is composed of two main structural units: a large complex multi-sheet domain I, and a smaller alpha-helical domain II. The structural organisation of domain I is closely related to FAD-containing monooxygenases and oxidases []. Conserved regions common to GDI and the choroideraemia gene product, which delivers Rab to catalytic subunits of Rab geranylgeranyltransferase II, are clustered on one face of the domain []. The two most conserved regions form a compact structure at the apex of the molecule; site-directed mutagenesis has shown these regions to play a critical role in the binding of Rab proteins [].; PDB: 1VG9_C 1VG0_A 1LTX_R 3P1W_A 3CPH_H 3CPJ_G 3CPI_H 1UKV_G 2BCG_G 1GND_A ....
Probab=29.60 E-value=1.4e+02 Score=27.82 Aligned_cols=50 Identities=20% Similarity=0.230 Sum_probs=33.5
Q ss_pred HHHHHHHhhC--CCCcEEecceEEEEEeeCCeeEE-EecCCCEEeecEEEecC
Q 021278 15 LLLETLAKEL--PSGTIRYSSQVVSIEESGHFKLL-HLADGTILKTKVLIGCD 64 (315)
Q Consensus 15 ~L~~~L~~~~--~~~~i~~~~~v~~~~~~~~~~~v-~~~~g~~~~ad~vVgAD 64 (315)
+|-|...+.+ -+.++..++.+.++..++++..+ ...+|++++|++||+..
T Consensus 233 ELpQ~FcRl~AV~GG~Y~L~~~i~~i~~~~~g~~~gV~s~ge~v~~k~vI~dp 285 (438)
T PF00996_consen 233 ELPQAFCRLSAVYGGTYMLNRPIDEIVVDEDGKVIGVKSEGEVVKAKKVIGDP 285 (438)
T ss_dssp HHHHHHHHHHHHTT-EEESS--EEEEEEETTTEEEEEEETTEEEEESEEEEEG
T ss_pred cHHHHHHHHhhhcCcEEEeCCccceeeeecCCeEEEEecCCEEEEcCEEEECC
Confidence 5666666533 56899999999999886654222 22478999999999654
No 284
>PRK07803 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=29.44 E-value=1.3e+02 Score=29.59 Aligned_cols=44 Identities=7% Similarity=0.045 Sum_probs=32.3
Q ss_pred CcEEecceEEEEEeeCCeeE-EE---ecCCC--EEeecEEEecCCCchhh
Q 021278 27 GTIRYSSQVVSIEESGHFKL-LH---LADGT--ILKTKVLIGCDGVNSIV 70 (315)
Q Consensus 27 ~~i~~~~~v~~~~~~~~~~~-v~---~~~g~--~~~ad~vVgADG~~S~v 70 (315)
++++.++.++++..+++.+. |. ..++. .+.|+.||-|.|-.+..
T Consensus 166 v~i~~~~~v~~L~~~~g~v~Gv~~~~~~~g~~~~i~Ak~VVlATGG~~~~ 215 (626)
T PRK07803 166 IKVFAECTITELLKDGGRIAGAFGYWRESGRFVLFEAPAVVLATGGIGKS 215 (626)
T ss_pred eEEEeCCEEEEEEEECCEEEEEEEEECCCCeEEEEEcCeEEECCCcccCC
Confidence 89999999999987655432 22 23554 68999999999975543
No 285
>PRK02106 choline dehydrogenase; Validated
Probab=29.32 E-value=1.6e+02 Score=28.35 Aligned_cols=44 Identities=18% Similarity=0.076 Sum_probs=31.7
Q ss_pred CCCcEEecceEEEEEeeCCe-eEEEecC--CC--EEeecEEEecCCCch
Q 021278 25 PSGTIRYSSQVVSIEESGHF-KLLHLAD--GT--ILKTKVLIGCDGVNS 68 (315)
Q Consensus 25 ~~~~i~~~~~v~~~~~~~~~-~~v~~~~--g~--~~~ad~vVgADG~~S 68 (315)
++++|+.+++|..|..+++. +.|++.+ +. .+.++-||-|=|+-.
T Consensus 214 ~nl~i~~~a~V~rI~~~~~~a~GV~~~~~~~~~~~~~ak~VILaaGai~ 262 (560)
T PRK02106 214 PNLTIVTHALTDRILFEGKRAVGVEYERGGGRETARARREVILSAGAIN 262 (560)
T ss_pred CCcEEEcCCEEEEEEEeCCeEEEEEEEeCCcEEEEEeeeeEEEccCCCC
Confidence 56999999999999988654 3355433 22 467888888888643
No 286
>smart00035 CLa CLUSTERIN alpha chain.
Probab=28.77 E-value=2.2e+02 Score=23.43 Aligned_cols=57 Identities=18% Similarity=0.156 Sum_probs=41.4
Q ss_pred CCCCCCCccchhhhhhHHHHHHHHHHHHHhccCCCCCCchhhhhHHHHHHHHHHHHhhhhhHHHHHHHHHHhhhhh
Q 021278 203 HPMTPDIGQGGCAALEDGIVLARCINEALKTKQGVGEEDEEEFNKRVEMGLKRYAKERRWRCFELISIAYLVGSIQ 278 (315)
Q Consensus 203 h~~~P~~G~G~~~al~da~~La~~l~~~~~~~~~~~~~~~~~s~~~~~~~l~~Y~~~r~~~~~~~~~~s~~~~~~~ 278 (315)
...+|..+ =+..-+++|..||+.+.+ ..++.|+.|+..+......+-.+..+.++..
T Consensus 87 s~~~P~q~-~Lr~El~eAL~LaE~ftq------------------qYd~lL~~~q~~m~nTs~Lle~ln~QFgWVS 143 (216)
T smart00035 87 STNNPDQP-QLRQELDESLQLAERFTQ------------------QYDQLLQSYQKKMLNTSSLLEQLNEQFGWVS 143 (216)
T ss_pred cCCCcchH-HHHHHHHHHHHHHHHHHH------------------HHHHHHHHHHHHHHhHHHHHHHHHHHhhHHH
Confidence 34555444 367788888888888877 6778899998888877777776766666654
No 287
>COG4529 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=27.89 E-value=1.8e+02 Score=27.30 Aligned_cols=57 Identities=19% Similarity=0.222 Sum_probs=37.5
Q ss_pred eeHHHHHHHHHhhC-------CCC-cEEecceEEEEEee--CCeeEEEecCCCEEeecEEEecCCCc
Q 021278 11 VRRKLLLETLAKEL-------PSG-TIRYSSQVVSIEES--GHFKLLHLADGTILKTKVLIGCDGVN 67 (315)
Q Consensus 11 i~R~~L~~~L~~~~-------~~~-~i~~~~~v~~~~~~--~~~~~v~~~~g~~~~ad~vVgADG~~ 67 (315)
.+|..|-..|.+.+ +.. -.+...+.+++... ..+..+...+|++..||.+|-|.|-.
T Consensus 97 ~pR~lfG~Yl~e~l~~l~~~~~~~~v~~~~~~a~~~~~~~n~~~~~~~~~~g~~~~ad~~Vlatgh~ 163 (474)
T COG4529 97 PPRRLFGEYLREQLAALLARGRQTRVRTIREEATSVRQDTNAGGYLVTTADGPSEIADIIVLATGHS 163 (474)
T ss_pred cchhHHHHHHHHHHHHHHHhcCccceeEEeeeeecceeccCCceEEEecCCCCeeeeeEEEEeccCC
Confidence 34555555554432 222 34455667777666 45678888999999999999998853
No 288
>PRK14727 putative mercuric reductase; Provisional
Probab=27.82 E-value=1.9e+02 Score=27.24 Aligned_cols=28 Identities=21% Similarity=0.373 Sum_probs=22.0
Q ss_pred eCCeeEEEecCCC--EEeecEEEecCCCch
Q 021278 41 SGHFKLLHLADGT--ILKTKVLIGCDGVNS 68 (315)
Q Consensus 41 ~~~~~~v~~~~g~--~~~ad~vVgADG~~S 68 (315)
+++.+.|..++|+ ++++|.||-|.|..-
T Consensus 133 ~~~~v~v~~~~g~~~~~~~d~lViATGs~p 162 (479)
T PRK14727 133 DGNTLVVRLHDGGERVLAADRCLIATGSTP 162 (479)
T ss_pred cCCEEEEEeCCCceEEEEeCEEEEecCCCC
Confidence 3456778777774 699999999999854
No 289
>PRK13984 putative oxidoreductase; Provisional
Probab=27.38 E-value=76 Score=30.86 Aligned_cols=36 Identities=22% Similarity=0.196 Sum_probs=29.2
Q ss_pred CCcEEEeccCCCCCCCCCccchhhhhhHHHHHHHHHHHHHhc
Q 021278 192 RGSVCVAGDALHPMTPDIGQGGCAALEDGIVLARCINEALKT 233 (315)
Q Consensus 192 ~~~v~LiGDAAh~~~P~~G~G~~~al~da~~La~~l~~~~~~ 233 (315)
..+|+.+||+++.. .+..|+.++..+|..|.+.|.+
T Consensus 568 ~~gVfAaGD~~~~~------~~v~Ai~~G~~AA~~I~~~L~~ 603 (604)
T PRK13984 568 IPWLFAGGDIVHGP------DIIHGVADGYWAAEGIDMYLRK 603 (604)
T ss_pred CCCEEEecCcCCch------HHHHHHHHHHHHHHHHHHHhcc
Confidence 46999999998632 3678999999999999887653
No 290
>KOG2665 consensus Predicted FAD-dependent oxidoreductase [Function unknown]
Probab=27.04 E-value=1.4e+02 Score=26.67 Aligned_cols=49 Identities=20% Similarity=0.257 Sum_probs=37.2
Q ss_pred CCcEEecceEEEEEeeCCe-----eEEEecCCCEEeecEEEecCCCchhhhhhh
Q 021278 26 SGTIRYSSQVVSIEESGHF-----KLLHLADGTILKTKVLIGCDGVNSIVAKWL 74 (315)
Q Consensus 26 ~~~i~~~~~v~~~~~~~~~-----~~v~~~~g~~~~ad~vVgADG~~S~vr~~l 74 (315)
+..+..+-++..+.++.+. ++|.-..+++++++++|.|-|..|---..+
T Consensus 210 gg~i~~n~~l~g~~~n~~~~~~Ypivv~ngk~ee~r~~~~vtc~gl~sdr~aa~ 263 (453)
T KOG2665|consen 210 GGRIYTNFRLQGIAQNKEATFSYPIVVLNGKGEEKRTKNVVTCAGLQSDRCAAL 263 (453)
T ss_pred cccccccceeccchhccCCCCCCceEEecCccceeEEeEEEEeccccHhHHHHH
Confidence 4688889999999887553 455555578999999999999887643433
No 291
>TIGR03452 mycothione_red mycothione reductase. Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.
Probab=27.04 E-value=98 Score=28.84 Aligned_cols=39 Identities=10% Similarity=0.075 Sum_probs=26.6
Q ss_pred CCcEEecceEEEEEeeCCeeEEEecCCCEEeecEEEecCCCchh
Q 021278 26 SGTIRYSSQVVSIEESGHFKLLHLADGTILKTKVLIGCDGVNSI 69 (315)
Q Consensus 26 ~~~i~~~~~v~~~~~~~~~~~v~~~~g~~~~ad~vVgADG~~S~ 69 (315)
++++..|+.+.. +.-+|...+|+++++|.||-|.|....
T Consensus 106 gv~~~~g~~~~~-----~~~~V~~~~g~~~~~d~lIiATGs~p~ 144 (452)
T TIGR03452 106 NIDVYDGHARFV-----GPRTLRTGDGEEITGDQIVIAAGSRPY 144 (452)
T ss_pred CeEEEEEEEEEe-----cCCEEEECCCcEEEeCEEEEEECCCCC
Confidence 466666554333 223455677888999999999998753
No 292
>TIGR02462 pyranose_ox pyranose oxidase. Pyranose oxidase (also called glucose 2-oxidase) converts D-glucose and molecular oxygen to 2-dehydro-D-glucose and hydrogen peroxide. Peroxide production is believed to be important to the wood rot fungi in which this enzyme is found for lignin degradation.
Probab=26.60 E-value=1.7e+02 Score=28.23 Aligned_cols=51 Identities=10% Similarity=-0.030 Sum_probs=35.0
Q ss_pred CCCCcEEecceEEEEEeeCC---eeE-EEec---CCC--EEeecEEEecCCCchhhhhhh
Q 021278 24 LPSGTIRYSSQVVSIEESGH---FKL-LHLA---DGT--ILKTKVLIGCDGVNSIVAKWL 74 (315)
Q Consensus 24 ~~~~~i~~~~~v~~~~~~~~---~~~-v~~~---~g~--~~~ad~vVgADG~~S~vr~~l 74 (315)
.++++|+.++.|+.++.+++ +++ |.+. +|+ +++|++||-|-|.--..|=.|
T Consensus 226 ~~n~~l~~~a~v~~i~~d~~~~~~v~~v~~~d~~~g~~~~v~A~~vVLAagaIetpRLLL 285 (544)
T TIGR02462 226 SERFTLLTNHRCTRLVRNETNESEIEAALVRDLLSGDRFEIKADVYVLACGAVHNPQILV 285 (544)
T ss_pred CCCEEEEcCCEEEEEEeCCCCCceeEEEEEEECCCCcEEEEECCEEEEccCchhhHHHHH
Confidence 36699999999999987643 232 4333 343 689999888888654444444
No 293
>PLN02507 glutathione reductase
Probab=25.91 E-value=2.5e+02 Score=26.57 Aligned_cols=41 Identities=12% Similarity=0.037 Sum_probs=28.5
Q ss_pred CCcEEecceEEEEEeeCCeeEEEecCCC--EEeecEEEecCCCchh
Q 021278 26 SGTIRYSSQVVSIEESGHFKLLHLADGT--ILKTKVLIGCDGVNSI 69 (315)
Q Consensus 26 ~~~i~~~~~v~~~~~~~~~~~v~~~~g~--~~~ad~vVgADG~~S~ 69 (315)
++++..+ ++..+ +.+.+.|...+|+ ++++|.||-|-|....
T Consensus 138 gV~~i~g-~a~~v--d~~~v~V~~~~g~~~~~~~d~LIIATGs~p~ 180 (499)
T PLN02507 138 GVKLYEG-EGKIV--GPNEVEVTQLDGTKLRYTAKHILIATGSRAQ 180 (499)
T ss_pred CcEEEEE-EEEEe--cCCEEEEEeCCCcEEEEEcCEEEEecCCCCC
Confidence 4666654 33333 4556778888876 5899999999998653
No 294
>PRK08351 DNA-directed RNA polymerase subunit E''; Validated
Probab=25.40 E-value=70 Score=20.61 Aligned_cols=24 Identities=42% Similarity=0.362 Sum_probs=21.0
Q ss_pred ecEEEecCCCchhhhhhhCCCCCc
Q 021278 57 TKVLIGCDGVNSIVAKWLGFKNPA 80 (315)
Q Consensus 57 ad~vVgADG~~S~vr~~l~~~~~~ 80 (315)
+.+||-.|=-+|.+.+.+|+..|.
T Consensus 31 ~G~viI~dPe~S~IAk~l~i~~pG 54 (61)
T PRK08351 31 FDLVIIIDVENSRIAKKLGAKVPG 54 (61)
T ss_pred ccEEEEeCCcHhHHHHHhCCCCCC
Confidence 459999999999999999998764
No 295
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=25.27 E-value=2.4e+02 Score=27.78 Aligned_cols=43 Identities=26% Similarity=0.275 Sum_probs=30.1
Q ss_pred CCCcEEecceEEEEEeeCCeeEEE---ec---------------CCC--EEeecEEEecCCCc
Q 021278 25 PSGTIRYSSQVVSIEESGHFKLLH---LA---------------DGT--ILKTKVLIGCDGVN 67 (315)
Q Consensus 25 ~~~~i~~~~~v~~~~~~~~~~~v~---~~---------------~g~--~~~ad~vVgADG~~ 67 (315)
.++++++++.+.++..+++++.++ ++ +|+ ++.+|.||.|-|..
T Consensus 374 eGV~i~~~~~~~~i~~~~~~~~v~~~~~~~~~~d~~G~~~~~~~~g~~~~i~~D~VI~AiG~~ 436 (652)
T PRK12814 374 EGVSLRELAAPVSIERSEGGLELTAIKMQQGEPDESGRRRPVPVEGSEFTLQADTVISAIGQQ 436 (652)
T ss_pred cCCcEEeccCcEEEEecCCeEEEEEEEEEecccCCCCCCcceecCCceEEEECCEEEECCCCc
Confidence 469999999999987665543332 11 122 58899999999864
No 296
>COG2907 Predicted NAD/FAD-binding protein [General function prediction only]
Probab=24.46 E-value=94 Score=28.03 Aligned_cols=41 Identities=17% Similarity=0.148 Sum_probs=35.3
Q ss_pred CcEEecceEEEEEeeCCeeEEEecCCCEEeecEEEecCCCc
Q 021278 27 GTIRYSSQVVSIEESGHFKLLHLADGTILKTKVLIGCDGVN 67 (315)
Q Consensus 27 ~~i~~~~~v~~~~~~~~~~~v~~~~g~~~~ad~vVgADG~~ 67 (315)
..|..++.|..+..-++++.|...+|++-+.|-||-|-=..
T Consensus 232 ~~i~t~~~V~~l~rlPdGv~l~~~~G~s~rFD~vViAth~d 272 (447)
T COG2907 232 GRIETRTPVCRLRRLPDGVVLVNADGESRRFDAVVIATHPD 272 (447)
T ss_pred ceeecCCceeeeeeCCCceEEecCCCCccccceeeeecChH
Confidence 46999999999999999999999999998898888775544
No 297
>COG1995 PdxA Pyridoxal phosphate biosynthesis protein [Coenzyme metabolism]
Probab=24.39 E-value=1e+02 Score=27.29 Aligned_cols=38 Identities=29% Similarity=0.476 Sum_probs=33.0
Q ss_pred CCCcEEEeccCCCCCCCCCccchhhhhhHHHHHHHHHHHHHhc
Q 021278 191 SRGSVCVAGDALHPMTPDIGQGGCAALEDGIVLARCINEALKT 233 (315)
Q Consensus 191 ~~~~v~LiGDAAh~~~P~~G~G~~~al~da~~La~~l~~~~~~ 233 (315)
...|+.+.| +||+.|+|-..|.||-..+...++++-..
T Consensus 200 ~~PriaVaG-----LNPHaGE~G~lG~EE~diI~Paie~aR~~ 237 (332)
T COG1995 200 AEPRIAVAG-----LNPHAGEGGLLGREEIDIIIPAIEEARAE 237 (332)
T ss_pred CCcceEEec-----cCCCCCcCCCCCchhHHHHHHHHHHHHHh
Confidence 456888888 99999999999999999999988886554
No 298
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=24.07 E-value=1.1e+02 Score=28.67 Aligned_cols=34 Identities=9% Similarity=0.094 Sum_probs=20.7
Q ss_pred CCcEEecceEEEEEeeCCeeEEEecCCCEEeecEEEecCCCch
Q 021278 26 SGTIRYSSQVVSIEESGHFKLLHLADGTILKTKVLIGCDGVNS 68 (315)
Q Consensus 26 ~~~i~~~~~v~~~~~~~~~~~v~~~~g~~~~ad~vVgADG~~S 68 (315)
+++++.++.+.. + +.. +.....+|.||-|.|...
T Consensus 207 gv~~~~~~~v~~-~-------~~~-~~~~~~~d~vvlAtGa~~ 240 (471)
T PRK12810 207 GIEFRTNVEVGK-D-------ITA-EELLAEYDAVFLGTGAYK 240 (471)
T ss_pred CcEEEeCCEECC-c-------CCH-HHHHhhCCEEEEecCCCC
Confidence 578888876632 1 000 011246899999999873
No 299
>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []. Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....
Probab=23.14 E-value=71 Score=30.61 Aligned_cols=23 Identities=26% Similarity=0.434 Sum_probs=15.2
Q ss_pred EEEecCCCEE-eecEEEecCCCch
Q 021278 46 LLHLADGTIL-KTKVLIGCDGVNS 68 (315)
Q Consensus 46 ~v~~~~g~~~-~ad~vVgADG~~S 68 (315)
.|.|+||+++ .+|.||-|.|...
T Consensus 309 ~v~F~DGs~~e~vD~II~~TGY~~ 332 (531)
T PF00743_consen 309 SVIFEDGSTEEDVDVIIFCTGYKF 332 (531)
T ss_dssp EEEETTSEEEEE-SEEEE---EE-
T ss_pred cccccccccccccccccccccccc
Confidence 4779999875 6999999999864
No 300
>PLN02815 L-aspartate oxidase
Probab=23.09 E-value=1.9e+02 Score=28.18 Aligned_cols=56 Identities=14% Similarity=0.053 Sum_probs=39.0
Q ss_pred HHHHHHHhhC---CCCcEEecceEEEEEeeC-Ce---e-EEEe---cCCC--EEeecEEEecCCCchhh
Q 021278 15 LLLETLAKEL---PSGTIRYSSQVVSIEESG-HF---K-LLHL---ADGT--ILKTKVLIGCDGVNSIV 70 (315)
Q Consensus 15 ~L~~~L~~~~---~~~~i~~~~~v~~~~~~~-~~---~-~v~~---~~g~--~~~ad~vVgADG~~S~v 70 (315)
.+...|.+++ ++++|+.++.++++..++ ++ + -|.+ .+|. .+.|+-||-|.|-.+.+
T Consensus 156 ~i~~~L~~~~~~~~~i~i~~~~~~~~Li~~~~g~~~~v~Gv~~~~~~~g~~~~i~AkaVILATGG~g~~ 224 (594)
T PLN02815 156 EIERALLEAVKNDPNITFFEHHFAIDLLTSQDGGSIVCHGADVLDTRTGEVVRFISKVTLLASGGAGHI 224 (594)
T ss_pred HHHHHHHHHHHhcCCCEEEeceEhheeeeecCCCccEEEEEEEEEcCCCeEEEEEeceEEEcCCcceee
Confidence 4666676655 468999999999988753 21 1 2332 3454 67899999999977643
No 301
>PF10819 DUF2564: Protein of unknown function (DUF2564) ; InterPro: IPR020314 This entry contains proteins with no known function.
Probab=22.99 E-value=89 Score=21.17 Aligned_cols=31 Identities=29% Similarity=0.366 Sum_probs=25.1
Q ss_pred EeccCCCCCCCCCccchhhhhhHHH-HHHHHH
Q 021278 197 VAGDALHPMTPDIGQGGCAALEDGI-VLARCI 227 (315)
Q Consensus 197 LiGDAAh~~~P~~G~G~~~al~da~-~La~~l 227 (315)
+||-|-+.|+|..=+..+.|++||. .|....
T Consensus 18 mvG~AT~smdp~~Le~A~qAve~Ar~ql~~a~ 49 (79)
T PF10819_consen 18 MVGQATMSMDPDQLEHATQAVEDAREQLSQAK 49 (79)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 3678888999999999999999998 454443
No 302
>PRK06416 dihydrolipoamide dehydrogenase; Reviewed
Probab=22.78 E-value=2.5e+02 Score=26.13 Aligned_cols=41 Identities=12% Similarity=0.028 Sum_probs=27.8
Q ss_pred CCCcEEecceEEEEEeeCCeeEEEecC-CCEEeecEEEecCCCch
Q 021278 25 PSGTIRYSSQVVSIEESGHFKLLHLAD-GTILKTKVLIGCDGVNS 68 (315)
Q Consensus 25 ~~~~i~~~~~v~~~~~~~~~~~v~~~~-g~~~~ad~vVgADG~~S 68 (315)
.+++++.++ ++.+ +...+.|...+ +.++++|.||-|.|...
T Consensus 105 ~gv~~~~g~-~~~~--~~~~~~v~~~~~~~~~~~d~lViAtGs~p 146 (462)
T PRK06416 105 NKVDIIRGE-AKLV--DPNTVRVMTEDGEQTYTAKNIILATGSRP 146 (462)
T ss_pred CCCEEEEEE-EEEc--cCCEEEEecCCCcEEEEeCEEEEeCCCCC
Confidence 357888764 3332 34456666444 36899999999999865
No 303
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=22.68 E-value=1.6e+02 Score=27.42 Aligned_cols=36 Identities=28% Similarity=0.254 Sum_probs=28.2
Q ss_pred CcEEEeccCCCCCCCCCccchhhhhhHHHHHHHHHHHHHhc
Q 021278 193 GSVCVAGDALHPMTPDIGQGGCAALEDGIVLARCINEALKT 233 (315)
Q Consensus 193 ~~v~LiGDAAh~~~P~~G~G~~~al~da~~La~~l~~~~~~ 233 (315)
.+|..+||++.. ..-+..|+.++..+|..|.+.+.+
T Consensus 418 ~~VfA~GD~~~~-----~~~~~~A~~~G~~aA~~I~~~l~g 453 (457)
T PRK11749 418 PGVFAGGDIVTG-----AATVVWAVGDGKDAAEAIHEYLEG 453 (457)
T ss_pred CCEEEeCCcCCC-----chHHHHHHHHHHHHHHHHHHHHhc
Confidence 589999999842 124568999999999999887765
No 304
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=22.60 E-value=2.7e+02 Score=25.91 Aligned_cols=33 Identities=27% Similarity=0.272 Sum_probs=23.9
Q ss_pred CcEEEeccCCCCCCCCCccchhhhhhHHHHHHHHHHHH
Q 021278 193 GSVCVAGDALHPMTPDIGQGGCAALEDGIVLARCINEA 230 (315)
Q Consensus 193 ~~v~LiGDAAh~~~P~~G~G~~~al~da~~La~~l~~~ 230 (315)
.+|..+||+++. | .-+..|+.++..+|..|.+.
T Consensus 416 ~~VfA~GD~~~g--~---~~v~~Ai~~G~~AA~~I~~~ 448 (449)
T TIGR01316 416 PGVFAGGDIILG--A---ATVIRAMGQGKRAAKSINEY 448 (449)
T ss_pred CCEEEecCCCCC--c---HHHHHHHHHHHHHHHHHHhh
Confidence 478999999752 1 23567888888888887664
No 305
>KOG2404 consensus Fumarate reductase, flavoprotein subunit [Energy production and conversion]
Probab=22.38 E-value=1e+02 Score=27.48 Aligned_cols=48 Identities=21% Similarity=0.177 Sum_probs=35.9
Q ss_pred CC-CcEEecceEEEEEeeCCeeE-EEe--cCCC--EEeecEEEecCCCchhhhh
Q 021278 25 PS-GTIRYSSQVVSIEESGHFKL-LHL--ADGT--ILKTKVLIGCDGVNSIVAK 72 (315)
Q Consensus 25 ~~-~~i~~~~~v~~~~~~~~~~~-v~~--~~g~--~~~ad~vVgADG~~S~vr~ 72 (315)
|+ +.|..+++|+.+..+.+.|. |.+ .+|+ .+.++-||-|.|-.+..-+
T Consensus 157 pe~~ki~~nskvv~il~n~gkVsgVeymd~sgek~~~~~~~VVlatGGf~ysd~ 210 (477)
T KOG2404|consen 157 PELVKILLNSKVVDILRNNGKVSGVEYMDASGEKSKIIGDAVVLATGGFGYSDK 210 (477)
T ss_pred hHHHhhhhcceeeeeecCCCeEEEEEEEcCCCCccceecCceEEecCCcCcChH
Confidence 44 89999999999998777642 333 3343 6889999999998886533
No 306
>PTZ00306 NADH-dependent fumarate reductase; Provisional
Probab=22.24 E-value=3.3e+02 Score=29.11 Aligned_cols=45 Identities=20% Similarity=0.040 Sum_probs=33.1
Q ss_pred CCCcEEecceEEEEEeeC-----C----ee-EEEec-----CCC--EEeecEEEecCCCchh
Q 021278 25 PSGTIRYSSQVVSIEESG-----H----FK-LLHLA-----DGT--ILKTKVLIGCDGVNSI 69 (315)
Q Consensus 25 ~~~~i~~~~~v~~~~~~~-----~----~~-~v~~~-----~g~--~~~ad~vVgADG~~S~ 69 (315)
.+++|+++++++++..++ + .| -|..+ +|+ .+.|+-||-|.|-.+.
T Consensus 560 ~gv~i~~~t~~~~LI~d~~~~~~G~~~~~V~Gv~~~~~~~~~g~~~~i~AkaVILATGGf~~ 621 (1167)
T PTZ00306 560 GRVTIMTETTVTSLLSESSARPDGVREIRVTGVRYKQASDASGQVMDLLADAVILATGGFSN 621 (1167)
T ss_pred CCcEEEECCEEEEEEecCCcccCCCccceEEEEEEEecccCCCcEEEEEeceEEEecCCccc
Confidence 369999999999998753 1 22 23333 454 6899999999998775
No 307
>COG0090 RplB Ribosomal protein L2 [Translation, ribosomal structure and biogenesis]
Probab=22.07 E-value=1.7e+02 Score=24.97 Aligned_cols=32 Identities=22% Similarity=0.312 Sum_probs=24.9
Q ss_pred ceEEEEEeeCCe----eEEEecCCCEEeecEEEecCCCc
Q 021278 33 SQVVSIEESGHF----KLLHLADGTILKTKVLIGCDGVN 67 (315)
Q Consensus 33 ~~v~~~~~~~~~----~~v~~~~g~~~~ad~vVgADG~~ 67 (315)
.+|..|+.+++. ..|.++||+.. |+++++|..
T Consensus 76 g~V~~IeyDP~RsA~IAlv~y~dGek~---yilAp~Gl~ 111 (275)
T COG0090 76 GKVEDIEYDPNRSAPIALVVYEDGEKR---YILAPEGLK 111 (275)
T ss_pred EEEEEEEECCCCCcceEEEEecCCCEE---EEEccCccc
Confidence 478899988775 56788999864 888888875
No 308
>COG3486 IucD Lysine/ornithine N-monooxygenase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=22.02 E-value=2e+02 Score=26.53 Aligned_cols=66 Identities=17% Similarity=0.228 Sum_probs=46.6
Q ss_pred CccceeeeHHHHHHHHHhhCCC-CcEEecceEEEEEee-CCe-eE--EEecCCCEEeecEEEecCCCchhh
Q 021278 5 EHEMRCVRRKLLLETLAKELPS-GTIRYSSQVVSIEES-GHF-KL--LHLADGTILKTKVLIGCDGVNSIV 70 (315)
Q Consensus 5 ~~~~~~i~R~~L~~~L~~~~~~-~~i~~~~~v~~~~~~-~~~-~~--v~~~~g~~~~ad~vVgADG~~S~v 70 (315)
.++.+.+.|.++.+.+.=.+.. -.+++|.+|..|... .+. +. +...+++.++|+=||..-|..=.+
T Consensus 89 ~~e~f~i~R~Ey~dY~~Waa~~l~~~rfg~~V~~i~~~~~d~~~~~~~~t~~~~~y~ar~lVlg~G~~P~I 159 (436)
T COG3486 89 NYETFHIPRREYNDYCQWAASQLPSLRFGEEVTDISSLDGDAVVRLFVVTANGTVYRARNLVLGVGTQPYI 159 (436)
T ss_pred hhhcccccHHHHHHHHHHHHhhCCccccCCeeccccccCCcceeEEEEEcCCCcEEEeeeEEEccCCCcCC
Confidence 3567789999998887765544 689999999977332 232 23 444566789998888888876444
No 309
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=21.41 E-value=1.3e+02 Score=28.11 Aligned_cols=33 Identities=15% Similarity=0.060 Sum_probs=21.8
Q ss_pred CCcEEecceEEEEEeeCCeeEEEecCCCEEeecEEEecCCCc
Q 021278 26 SGTIRYSSQVVSIEESGHFKLLHLADGTILKTKVLIGCDGVN 67 (315)
Q Consensus 26 ~~~i~~~~~v~~~~~~~~~~~v~~~~g~~~~ad~vVgADG~~ 67 (315)
+++++.++.+.. .+.+++. .+.+|.||-|.|..
T Consensus 204 gv~~~~~~~v~~--------~v~~~~~-~~~~d~vvlAtGa~ 236 (457)
T PRK11749 204 GVEIRTNTEVGR--------DITLDEL-RAGYDAVFIGTGAG 236 (457)
T ss_pred CCEEEeCCEECC--------ccCHHHH-HhhCCEEEEccCCC
Confidence 588888877621 1222222 26799999999985
No 310
>PRK01909 pdxA 4-hydroxythreonine-4-phosphate dehydrogenase; Validated
Probab=21.37 E-value=1.4e+02 Score=26.58 Aligned_cols=38 Identities=21% Similarity=0.356 Sum_probs=32.9
Q ss_pred CCCcEEEeccCCCCCCCCCccchhhhhhHHHHHHHHHHHHHhc
Q 021278 191 SRGSVCVAGDALHPMTPDIGQGGCAALEDGIVLARCINEALKT 233 (315)
Q Consensus 191 ~~~~v~LiGDAAh~~~P~~G~G~~~al~da~~La~~l~~~~~~ 233 (315)
.+.||.+.| ++|+.|+|-..|-|+...+..+++.+-..
T Consensus 197 ~~PrIaV~G-----LNPHAGE~G~~G~EE~~iI~PAi~~~~~~ 234 (329)
T PRK01909 197 AAPRILVTG-----LNPHAGENGYLGREEIDVIEPALARARAA 234 (329)
T ss_pred CCCCEEEEe-----eCCCCCCCCCCcHHHHHHHHHHHHHHHHC
Confidence 356888888 99999999999999999999999886554
No 311
>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=20.99 E-value=3.4e+02 Score=25.03 Aligned_cols=42 Identities=17% Similarity=0.231 Sum_probs=28.9
Q ss_pred CCCcEEecceEEEEEeeCCeeEEEecCCC-EEeecEEEecCCCchh
Q 021278 25 PSGTIRYSSQVVSIEESGHFKLLHLADGT-ILKTKVLIGCDGVNSI 69 (315)
Q Consensus 25 ~~~~i~~~~~v~~~~~~~~~~~v~~~~g~-~~~ad~vVgADG~~S~ 69 (315)
.++++..+ ++..+ +.+.+.|...++. ++++|.||-|.|....
T Consensus 90 ~gv~~~~g-~~~~i--~~~~~~v~~~~g~~~~~~d~lviATGs~p~ 132 (441)
T PRK08010 90 PNIDVIDG-QAEFI--NNHSLRVHRPEGNLEIHGEKIFINTGAQTV 132 (441)
T ss_pred CCcEEEEE-EEEEe--cCCEEEEEeCCCeEEEEeCEEEEcCCCcCC
Confidence 35666665 33333 3455777777775 7999999999998653
No 312
>TIGR00557 pdxA 4-hydroxythreonine-4-phosphate dehydrogenase. This model represents PdxA, an NAD+-dependent 4-hydroxythreonine 4-phosphate dehydrogenase (EC 1.1.1.262) active in pyridoxal phosphate biosynthesis.
Probab=20.66 E-value=1.5e+02 Score=26.34 Aligned_cols=38 Identities=24% Similarity=0.442 Sum_probs=32.8
Q ss_pred CCCcEEEeccCCCCCCCCCccchhhhhhHHHHHHHHHHHHHhc
Q 021278 191 SRGSVCVAGDALHPMTPDIGQGGCAALEDGIVLARCINEALKT 233 (315)
Q Consensus 191 ~~~~v~LiGDAAh~~~P~~G~G~~~al~da~~La~~l~~~~~~ 233 (315)
.+.||.+.| ++|+.|+|-..|-|+...+...+.++-..
T Consensus 194 ~~PrIaV~g-----LNPHAGE~G~~G~EE~~iI~PAI~~~~~~ 231 (320)
T TIGR00557 194 ARPRIAVAG-----LNPHAGEGGHLGREEIDIIIPALEALRAE 231 (320)
T ss_pred CCCCEEEEe-----cCCCCCCCCCCcHHHHHHHHHHHHHHHHC
Confidence 356888887 99999999999999999999999886544
No 313
>PRK05312 pdxA 4-hydroxythreonine-4-phosphate dehydrogenase; Provisional
Probab=20.64 E-value=1.5e+02 Score=26.58 Aligned_cols=38 Identities=29% Similarity=0.475 Sum_probs=32.9
Q ss_pred CCCcEEEeccCCCCCCCCCccchhhhhhHHHHHHHHHHHHHhc
Q 021278 191 SRGSVCVAGDALHPMTPDIGQGGCAALEDGIVLARCINEALKT 233 (315)
Q Consensus 191 ~~~~v~LiGDAAh~~~P~~G~G~~~al~da~~La~~l~~~~~~ 233 (315)
.+.||.+.| ++|+.|+|-..|-|+...+..++.++...
T Consensus 206 ~~PrIaV~G-----LNPHAGE~G~~G~EE~~iI~PAI~~~~~~ 243 (336)
T PRK05312 206 ASPRLAVAG-----LNPHAGEGGALGREDIDIIAPAIEQLRAE 243 (336)
T ss_pred CCCCEEEEe-----eCCCCCCCCCCcHHHHHHHHHHHHHHHHC
Confidence 356888887 99999999999999999999999886544
No 314
>PRK07846 mycothione reductase; Reviewed
Probab=20.61 E-value=1.8e+02 Score=27.10 Aligned_cols=32 Identities=19% Similarity=0.138 Sum_probs=23.7
Q ss_pred CCcEEEeccCCCCCCCCCccchhhhhhHHHHHHHHHH
Q 021278 192 RGSVCVAGDALHPMTPDIGQGGCAALEDGIVLARCIN 228 (315)
Q Consensus 192 ~~~v~LiGDAAh~~~P~~G~G~~~al~da~~La~~l~ 228 (315)
..+|..+||+++. .|+ ...|...+..+++.|.
T Consensus 292 ~p~IyA~GD~~~~-~~l----~~~A~~~g~~~a~ni~ 323 (451)
T PRK07846 292 AEGVFALGDVSSP-YQL----KHVANHEARVVQHNLL 323 (451)
T ss_pred CCCEEEEeecCCC-ccC----hhHHHHHHHHHHHHHc
Confidence 4689999999974 232 2577888888887775
No 315
>PRK13748 putative mercuric reductase; Provisional
Probab=20.45 E-value=3e+02 Score=26.34 Aligned_cols=41 Identities=12% Similarity=0.151 Sum_probs=27.7
Q ss_pred CCcEEecceEEEEEeeCCeeEEEecCCC--EEeecEEEecCCCchh
Q 021278 26 SGTIRYSSQVVSIEESGHFKLLHLADGT--ILKTKVLIGCDGVNSI 69 (315)
Q Consensus 26 ~~~i~~~~~v~~~~~~~~~~~v~~~~g~--~~~ad~vVgADG~~S~ 69 (315)
++++..+ ++.. .++..+.|...+|+ ++++|.||-|.|....
T Consensus 203 ~v~~~~g-~~~~--~~~~~~~v~~~~g~~~~~~~d~lviAtGs~p~ 245 (561)
T PRK13748 203 AITVLHG-EARF--KDDQTLIVRLNDGGERVVAFDRCLIATGASPA 245 (561)
T ss_pred CeEEEEE-EEEE--ecCCEEEEEeCCCceEEEEcCEEEEcCCCCCC
Confidence 4566665 2332 23455777777764 6999999999998653
No 316
>PRK03371 pdxA 4-hydroxythreonine-4-phosphate dehydrogenase 2; Provisional
Probab=20.21 E-value=1.5e+02 Score=26.39 Aligned_cols=38 Identities=21% Similarity=0.347 Sum_probs=32.7
Q ss_pred CCCcEEEeccCCCCCCCCCccchhhhhhHHHHHHHHHHHHHhc
Q 021278 191 SRGSVCVAGDALHPMTPDIGQGGCAALEDGIVLARCINEALKT 233 (315)
Q Consensus 191 ~~~~v~LiGDAAh~~~P~~G~G~~~al~da~~La~~l~~~~~~ 233 (315)
.+.||.+.| +||+.|+|-..|-|+...+...+.++-..
T Consensus 200 ~~PrIaV~g-----LNPHAGE~G~~G~EE~~iI~PAi~~~~~~ 237 (326)
T PRK03371 200 VKPRIAVAG-----VNPHAGENGLFGDEEIRIVTPAIEAMRAK 237 (326)
T ss_pred CCCCEEEEe-----eCCCCCCCCCCcHHHHHHHHHHHHHHHHC
Confidence 356888887 99999999999999999999999886543
No 317
>PRK06370 mercuric reductase; Validated
Probab=20.21 E-value=2.5e+02 Score=26.11 Aligned_cols=38 Identities=16% Similarity=0.122 Sum_probs=26.2
Q ss_pred CCcEEecceEEEEEeeCCeeEEEecCCCEEeecEEEecCCCchh
Q 021278 26 SGTIRYSSQVVSIEESGHFKLLHLADGTILKTKVLIGCDGVNSI 69 (315)
Q Consensus 26 ~~~i~~~~~v~~~~~~~~~~~v~~~~g~~~~ad~vVgADG~~S~ 69 (315)
+++++.|+.+. .++..+.+ ++.++++|.||-|.|....
T Consensus 109 gv~v~~g~~~~---~~~~~v~v---~~~~~~~d~lViATGs~p~ 146 (463)
T PRK06370 109 GVDVFRGHARF---ESPNTVRV---GGETLRAKRIFINTGARAA 146 (463)
T ss_pred CcEEEEEEEEE---ccCCEEEE---CcEEEEeCEEEEcCCCCCC
Confidence 67888777542 22333444 4568999999999998654
Done!