BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 021279
         (315 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2E7U|A Chain A, Crystal Structure Of Glutamate-1-Semialdehyde
           2,1-Aminomutase From Thermus Thermophilus Hb8
          Length = 424

 Score = 29.3 bits (64), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 11/25 (44%), Positives = 18/25 (72%)

Query: 231 EENTAMRATMEELGKKVEAGIDQIL 255
           EEN    A +E+LG ++EAG+ ++L
Sbjct: 317 EENPGYYAYLEDLGARLEAGLKEVL 341


>pdb|3RUI|A Chain A, Crystal Structure Of Atg7c-Atg8 Complex
          Length = 340

 Score = 28.1 bits (61), Expect = 5.8,   Method: Compositional matrix adjust.
 Identities = 12/35 (34%), Positives = 22/35 (62%)

Query: 275 ITALEGMFDSFNMKIKKHIQNKSDCGKPKAPINAS 309
           IT ++    S++  +++ + N  DCGKPKA + A+
Sbjct: 61  ITFVDNGTVSYSNPVRQALYNFEDCGKPKAELAAA 95


>pdb|3T7E|A Chain A, Atg8 Transfer From Atg7 To Atg3: A Distinctive E1-E2
           Architecture And Mechanism In The Autophagy Pathway
          Length = 344

 Score = 28.1 bits (61), Expect = 6.8,   Method: Compositional matrix adjust.
 Identities = 12/35 (34%), Positives = 22/35 (62%)

Query: 275 ITALEGMFDSFNMKIKKHIQNKSDCGKPKAPINAS 309
           IT ++    S++  +++ + N  DCGKPKA + A+
Sbjct: 65  ITFVDNGTVSYSNPVRQALYNFEDCGKPKAELAAA 99


>pdb|3VH3|A Chain A, Crystal Structure Of Atg7ctd-Atg8 Complex
 pdb|3VH4|A Chain A, Crystal Structure Of Atg7ctd-Atg8-Mgatp Complex
          Length = 340

 Score = 28.1 bits (61), Expect = 7.0,   Method: Compositional matrix adjust.
 Identities = 12/35 (34%), Positives = 22/35 (62%)

Query: 275 ITALEGMFDSFNMKIKKHIQNKSDCGKPKAPINAS 309
           IT ++    S++  +++ + N  DCGKPKA + A+
Sbjct: 61  ITFVDNGTVSYSNPVRQALYNFEDCGKPKAELAAA 95


>pdb|4GSL|A Chain A, Crystal Structure Of An Atg7-Atg3 Crosslinked Complex
 pdb|4GSL|B Chain B, Crystal Structure Of An Atg7-Atg3 Crosslinked Complex
          Length = 615

 Score = 27.7 bits (60), Expect = 8.9,   Method: Compositional matrix adjust.
 Identities = 12/35 (34%), Positives = 22/35 (62%)

Query: 275 ITALEGMFDSFNMKIKKHIQNKSDCGKPKAPINAS 309
           IT ++    S++  +++ + N  DCGKPKA + A+
Sbjct: 353 ITFVDNGTVSYSNPVRQALYNFEDCGKPKAELAAA 387


>pdb|3VH2|A Chain A, Crystal Structure Of Saccharomyces Cerevisiae Atg7 (1-613)
          Length = 616

 Score = 27.7 bits (60), Expect = 8.9,   Method: Compositional matrix adjust.
 Identities = 12/35 (34%), Positives = 22/35 (62%)

Query: 275 ITALEGMFDSFNMKIKKHIQNKSDCGKPKAPINAS 309
           IT ++    S++  +++ + N  DCGKPKA + A+
Sbjct: 354 ITFVDNGTVSYSNPVRQALYNFEDCGKPKAELAAA 388


>pdb|3VH1|A Chain A, Crystal Structure Of Saccharomyces Cerevisiae Atg7 (1-595)
          Length = 598

 Score = 27.7 bits (60), Expect = 9.6,   Method: Compositional matrix adjust.
 Identities = 12/35 (34%), Positives = 22/35 (62%)

Query: 275 ITALEGMFDSFNMKIKKHIQNKSDCGKPKAPINAS 309
           IT ++    S++  +++ + N  DCGKPKA + A+
Sbjct: 354 ITFVDNGTVSYSNPVRQALYNFEDCGKPKAELAAA 388


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.313    0.127    0.344 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,718,519
Number of Sequences: 62578
Number of extensions: 270676
Number of successful extensions: 632
Number of sequences better than 100.0: 30
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 22
Number of HSP's that attempted gapping in prelim test: 619
Number of HSP's gapped (non-prelim): 33
length of query: 315
length of database: 14,973,337
effective HSP length: 99
effective length of query: 216
effective length of database: 8,778,115
effective search space: 1896072840
effective search space used: 1896072840
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 51 (24.3 bits)