Query 021279
Match_columns 315
No_of_seqs 6 out of 8
Neff 1.8
Searched_HMMs 46136
Date Fri Mar 29 09:00:23 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021279.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/021279hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR02169 SMC_prok_A chromosom 94.5 6.2 0.00013 39.9 19.6 68 217-284 427-494 (1164)
2 TIGR02169 SMC_prok_A chromosom 93.6 6.4 0.00014 39.7 17.4 9 164-172 807-815 (1164)
3 PHA02562 46 endonuclease subun 92.4 10 0.00022 36.0 17.5 78 215-292 321-398 (562)
4 PRK04778 septation ring format 91.9 14 0.00031 36.6 17.1 112 67-183 213-338 (569)
5 COG1196 Smc Chromosome segrega 91.5 17 0.00037 39.0 18.1 65 112-176 715-786 (1163)
6 PF07888 CALCOCO1: Calcium bin 91.2 18 0.00039 37.4 17.2 162 114-281 144-319 (546)
7 TIGR02168 SMC_prok_B chromosom 90.9 19 0.00041 36.2 18.5 9 114-122 678-686 (1179)
8 PF09730 BicD: Microtubule-ass 89.4 32 0.0007 36.5 17.8 115 109-231 261-387 (717)
9 KOG0810 SNARE protein Syntaxin 89.1 13 0.00027 35.4 13.3 68 159-228 79-148 (297)
10 TIGR02168 SMC_prok_B chromosom 88.9 27 0.00059 35.1 19.4 17 26-42 112-128 (1179)
11 KOG4674 Uncharacterized conser 88.8 20 0.00044 41.6 16.8 166 112-290 100-294 (1822)
12 PF09728 Taxilin: Myosin-like 88.5 22 0.00048 33.4 18.5 99 109-212 53-151 (309)
13 TIGR00606 rad50 rad50. This fa 88.4 39 0.00084 36.9 17.9 82 212-293 956-1041(1311)
14 PF06160 EzrA: Septation ring 88.0 31 0.00067 34.5 18.7 211 67-283 209-431 (560)
15 PRK02224 chromosome segregatio 87.4 35 0.00076 34.7 15.9 17 58-75 155-171 (880)
16 PHA02562 46 endonuclease subun 86.7 29 0.00064 32.9 14.6 25 155-179 299-323 (562)
17 KOG0971 Microtubule-associated 86.5 8.2 0.00018 42.7 11.6 71 198-279 481-552 (1243)
18 COG4026 Uncharacterized protei 86.3 2.8 6.1E-05 40.1 7.3 71 207-291 115-195 (290)
19 PF10498 IFT57: Intra-flagella 85.5 25 0.00054 34.0 13.3 90 200-289 256-351 (359)
20 PF09726 Macoilin: Transmembra 84.7 45 0.00097 35.0 15.5 60 221-283 542-601 (697)
21 KOG3684 Ca2+-activated K+ chan 83.6 34 0.00074 35.3 13.8 126 146-290 332-465 (489)
22 KOG0996 Structural maintenance 83.1 59 0.0013 37.0 16.2 149 109-286 774-955 (1293)
23 COG1196 Smc Chromosome segrega 83.1 73 0.0016 34.4 16.8 56 241-296 831-886 (1163)
24 KOG0612 Rho-associated, coiled 81.8 81 0.0018 36.0 16.7 26 155-180 494-519 (1317)
25 PF00038 Filament: Intermediat 80.5 42 0.0009 29.9 19.6 138 109-247 99-253 (312)
26 KOG0288 WD40 repeat protein Ti 79.7 19 0.00041 36.8 10.4 79 205-284 29-122 (459)
27 KOG0243 Kinesin-like protein [ 79.3 44 0.00096 37.2 13.7 98 111-231 409-511 (1041)
28 COG0419 SbcC ATPase involved i 79.2 87 0.0019 32.8 17.9 61 60-123 418-491 (908)
29 PF04849 HAP1_N: HAP1 N-termin 78.4 31 0.00066 33.4 11.0 85 143-247 215-299 (306)
30 PRK10884 SH3 domain-containing 77.4 40 0.00088 30.3 10.8 15 201-215 137-151 (206)
31 PF08317 Spc7: Spc7 kinetochor 77.2 62 0.0014 30.1 16.9 175 67-257 76-263 (325)
32 PRK04778 septation ring format 77.2 40 0.00086 33.6 11.8 134 156-289 276-420 (569)
33 PF00769 ERM: Ezrin/radixin/mo 76.0 62 0.0013 29.4 13.0 137 114-259 48-230 (246)
34 KOG0978 E3 ubiquitin ligase in 75.5 1.2E+02 0.0026 32.5 17.5 91 200-290 465-562 (698)
35 PF10211 Ax_dynein_light: Axon 75.3 39 0.00085 29.6 10.0 67 111-183 82-148 (189)
36 KOG0161 Myosin class II heavy 74.9 1.8E+02 0.0038 34.6 17.3 34 140-173 1061-1094(1930)
37 PF15619 Lebercilin: Ciliary p 74.8 62 0.0013 28.8 12.6 43 206-248 71-113 (194)
38 TIGR03752 conj_TIGR03752 integ 74.6 27 0.00059 35.6 10.0 83 138-240 49-132 (472)
39 COG1340 Uncharacterized archae 73.2 93 0.002 30.2 15.1 62 231-292 165-226 (294)
40 COG5074 t-SNARE complex subuni 71.5 12 0.00026 36.0 6.4 64 193-259 44-118 (280)
41 PF08537 NBP1: Fungal Nap bind 71.4 12 0.00026 36.6 6.4 57 190-246 169-225 (323)
42 KOG0982 Centrosomal protein Nu 70.0 49 0.0011 34.2 10.5 142 86-243 313-487 (502)
43 PF09789 DUF2353: Uncharacteri 69.4 1E+02 0.0023 30.0 12.2 41 200-247 76-116 (319)
44 PF05701 WEMBL: Weak chloropla 69.0 1.3E+02 0.0028 30.1 18.1 107 151-262 224-333 (522)
45 PF13870 DUF4201: Domain of un 68.5 71 0.0015 26.9 13.2 71 220-290 94-176 (177)
46 PF05622 HOOK: HOOK protein; 68.5 2.7 5.9E-05 42.5 1.6 70 212-285 313-389 (713)
47 KOG4360 Uncharacterized coiled 67.6 66 0.0014 33.9 11.0 83 145-247 216-298 (596)
48 KOG0804 Cytoplasmic Zn-finger 67.5 1.1E+02 0.0024 31.7 12.5 108 155-278 339-447 (493)
49 PF10168 Nup88: Nuclear pore c 64.3 2E+02 0.0043 30.5 17.8 114 116-249 546-664 (717)
50 COG1579 Zn-ribbon protein, pos 62.7 1.4E+02 0.0029 28.1 12.0 118 148-267 17-139 (239)
51 PF00038 Filament: Intermediat 62.4 1.1E+02 0.0025 27.1 17.3 34 111-144 80-113 (312)
52 PF15254 CCDC14: Coiled-coil d 62.3 1.5E+02 0.0033 32.6 12.8 111 193-303 421-569 (861)
53 KOG0250 DNA repair protein RAD 61.8 2E+02 0.0043 32.5 13.8 107 150-260 276-387 (1074)
54 PF06005 DUF904: Protein of un 60.9 76 0.0017 24.6 8.4 33 205-237 6-38 (72)
55 PF05557 MAD: Mitotic checkpoi 60.8 13 0.00028 37.8 4.6 126 115-249 401-535 (722)
56 KOG0249 LAR-interacting protei 60.8 30 0.00066 37.7 7.4 87 147-240 97-183 (916)
57 PRK10884 SH3 domain-containing 60.0 1.3E+02 0.0029 27.1 11.3 19 162-180 93-111 (206)
58 PF04849 HAP1_N: HAP1 N-termin 59.8 89 0.0019 30.4 9.8 147 121-280 75-241 (306)
59 PF10186 Atg14: UV radiation r 59.5 1.2E+02 0.0025 26.2 13.8 85 157-241 22-108 (302)
60 PF06160 EzrA: Septation ring 59.2 1.2E+02 0.0027 30.4 11.0 88 196-294 278-372 (560)
61 KOG0161 Myosin class II heavy 59.1 3.8E+02 0.0082 32.1 16.7 70 110-179 842-911 (1930)
62 PF09766 FimP: Fms-interacting 58.4 79 0.0017 30.2 9.1 104 68-172 28-146 (355)
63 PF04048 Sec8_exocyst: Sec8 ex 57.8 1.1E+02 0.0024 25.4 11.5 94 165-282 43-136 (142)
64 PRK11637 AmiB activator; Provi 57.7 1.8E+02 0.0038 27.8 18.7 28 207-234 163-190 (428)
65 PF05622 HOOK: HOOK protein; 57.0 3.5 7.7E-05 41.7 0.0 86 196-285 339-424 (713)
66 PF14662 CCDC155: Coiled-coil 56.1 1.7E+02 0.0037 27.1 18.4 81 147-240 58-139 (193)
67 TIGR00634 recN DNA repair prot 55.8 2.2E+02 0.0048 28.3 15.2 106 113-228 212-322 (563)
68 PF04899 MbeD_MobD: MbeD/MobD 55.5 38 0.00083 26.4 5.4 51 154-213 6-59 (70)
69 PRK13922 rod shape-determining 55.1 76 0.0016 28.3 8.0 41 197-241 70-110 (276)
70 PRK11448 hsdR type I restricti 54.6 45 0.00098 36.7 7.7 44 137-180 159-202 (1123)
71 TIGR00606 rad50 rad50. This fa 54.5 3.3E+02 0.0073 30.0 16.7 36 215-250 879-914 (1311)
72 KOG1962 B-cell receptor-associ 54.4 1.5E+02 0.0033 27.6 10.0 70 193-264 143-212 (216)
73 PF12128 DUF3584: Protein of u 53.8 3.4E+02 0.0073 29.8 19.4 98 87-185 562-679 (1201)
74 PF03915 AIP3: Actin interacti 53.1 68 0.0015 32.1 8.0 78 112-192 245-332 (424)
75 PF11932 DUF3450: Protein of u 52.1 1.7E+02 0.0037 26.0 9.8 44 201-244 40-83 (251)
76 PF05837 CENP-H: Centromere pr 51.7 1.3E+02 0.0027 24.3 9.4 38 150-187 5-49 (106)
77 smart00338 BRLZ basic region l 51.6 37 0.0008 24.4 4.6 33 152-184 23-55 (65)
78 PF00170 bZIP_1: bZIP transcri 50.5 42 0.0009 24.2 4.7 33 151-183 22-54 (64)
79 KOG0994 Extracellular matrix g 50.1 2.8E+02 0.0061 32.5 12.7 59 126-185 1496-1554(1758)
80 PF13643 DUF4145: Domain of un 49.6 77 0.0017 23.0 6.0 51 124-187 14-66 (87)
81 PF02785 Biotin_carb_C: Biotin 49.2 5 0.00011 32.6 -0.3 22 24-45 73-94 (107)
82 PF10174 Cast: RIM-binding pro 48.8 3.8E+02 0.0083 29.0 17.7 68 68-141 137-204 (775)
83 PLN03229 acetyl-coenzyme A car 48.7 2.3E+02 0.0051 30.9 11.5 63 229-301 576-638 (762)
84 PF04156 IncA: IncA protein; 48.0 1.6E+02 0.0035 24.5 13.4 15 270-284 176-190 (191)
85 COG5185 HEC1 Protein involved 47.5 3.3E+02 0.0071 29.0 12.0 52 164-225 273-324 (622)
86 KOG4643 Uncharacterized coiled 47.4 3.4E+02 0.0074 31.0 12.7 74 154-236 529-606 (1195)
87 smart00878 Biotin_carb_C Bioti 47.3 7.5 0.00016 31.4 0.5 21 24-44 73-93 (107)
88 PF00015 MCPsignal: Methyl-acc 47.3 1.5E+02 0.0033 24.0 12.5 54 122-180 61-118 (213)
89 PF10146 zf-C4H2: Zinc finger- 47.1 1.8E+02 0.0039 26.8 9.2 45 113-157 11-55 (230)
90 PF12128 DUF3584: Protein of u 46.9 4.3E+02 0.0093 29.1 18.7 104 131-235 689-809 (1201)
91 PF11802 CENP-K: Centromere-as 46.5 1.6E+02 0.0034 28.4 9.0 85 149-245 93-182 (268)
92 PF10226 DUF2216: Uncharacteri 46.0 2.5E+02 0.0055 26.1 10.5 60 200-263 42-107 (195)
93 PRK04863 mukB cell division pr 45.7 5.4E+02 0.012 29.8 14.9 37 141-177 293-329 (1486)
94 KOG1850 Myosin-like coiled-coi 45.4 2.8E+02 0.0061 28.1 10.8 94 115-221 62-155 (391)
95 PF08614 ATG16: Autophagy prot 45.4 2E+02 0.0043 24.8 10.8 84 152-248 106-190 (194)
96 PRK14127 cell division protein 44.5 71 0.0015 26.7 5.7 72 208-280 28-99 (109)
97 PF07106 TBPIP: Tat binding pr 44.0 1.9E+02 0.0041 24.2 9.6 47 233-285 111-157 (169)
98 PF08826 DMPK_coil: DMPK coile 44.0 1.1E+02 0.0023 23.4 6.1 42 207-248 15-56 (61)
99 PF13949 ALIX_LYPXL_bnd: ALIX 43.6 2.3E+02 0.0049 24.9 9.6 38 207-247 77-114 (296)
100 COG0419 SbcC ATPase involved i 43.5 4.2E+02 0.0091 27.9 19.4 11 292-302 456-466 (908)
101 PRK10698 phage shock protein P 43.4 2.5E+02 0.0053 25.3 11.0 102 142-280 93-202 (222)
102 COG4345 Uncharacterized protei 43.3 34 0.00074 31.4 4.0 83 149-248 67-149 (181)
103 PF06156 DUF972: Protein of un 43.1 1.1E+02 0.0024 25.2 6.6 43 200-242 5-47 (107)
104 PF10481 CENP-F_N: Cenp-F N-te 43.1 1.9E+02 0.0041 28.6 9.1 116 130-245 70-190 (307)
105 PF02183 HALZ: Homeobox associ 42.9 57 0.0012 23.4 4.3 27 218-244 13-39 (45)
106 PF15397 DUF4618: Domain of un 41.4 88 0.0019 29.7 6.5 105 68-180 90-225 (258)
107 PF10186 Atg14: UV radiation r 41.1 2.4E+02 0.0051 24.4 13.1 41 143-183 58-98 (302)
108 PF07888 CALCOCO1: Calcium bin 40.9 4.5E+02 0.0098 27.6 17.3 66 116-181 139-204 (546)
109 PF02403 Seryl_tRNA_N: Seryl-t 40.6 1.7E+02 0.0037 22.6 7.6 77 206-286 25-101 (108)
110 PF05598 DUF772: Transposase d 40.3 42 0.00091 24.1 3.4 52 211-265 14-67 (77)
111 PF07716 bZIP_2: Basic region 40.3 1.3E+02 0.0028 21.2 7.6 50 113-181 2-51 (54)
112 PF04065 Not3: Not1 N-terminal 39.9 89 0.0019 29.0 6.2 118 56-188 12-155 (233)
113 COG2433 Uncharacterized conser 39.4 1.1E+02 0.0025 32.6 7.5 43 202-244 421-463 (652)
114 PRK13266 Thf1-like protein; Re 39.0 2.8E+02 0.006 25.9 9.2 99 132-231 77-203 (225)
115 TIGR03545 conserved hypothetic 38.7 2.3E+02 0.0051 29.1 9.4 106 156-281 147-259 (555)
116 KOG0250 DNA repair protein RAD 38.0 6.6E+02 0.014 28.6 16.6 53 199-251 291-343 (1074)
117 KOG0977 Nuclear envelope prote 37.9 5E+02 0.011 27.3 14.5 31 221-251 166-196 (546)
118 PF02183 HALZ: Homeobox associ 37.7 85 0.0018 22.5 4.5 32 218-249 6-37 (45)
119 KOG4673 Transcription factor T 37.7 6.2E+02 0.013 28.3 15.9 88 199-302 547-641 (961)
120 PF09728 Taxilin: Myosin-like 37.6 3.6E+02 0.0078 25.5 18.6 110 111-220 20-152 (309)
121 PF05278 PEARLI-4: Arabidopsis 36.7 3.5E+02 0.0076 26.1 9.7 53 240-292 209-261 (269)
122 PF15260 FAM219A: Protein fami 36.4 19 0.0004 31.4 1.2 16 203-220 76-91 (125)
123 KOG0239 Kinesin (KAR3 subfamil 36.1 5.5E+02 0.012 27.2 12.6 26 270-295 376-402 (670)
124 PF00901 Orbi_VP5: Orbivirus o 35.8 5.4E+02 0.012 27.0 12.0 85 149-245 88-172 (508)
125 TIGR00219 mreC rod shape-deter 35.7 71 0.0015 29.6 4.9 16 225-240 92-107 (283)
126 KOG0239 Kinesin (KAR3 subfamil 35.5 5.6E+02 0.012 27.1 12.8 93 139-235 173-273 (670)
127 PF04751 DUF615: Protein of un 34.4 2E+02 0.0044 25.1 7.2 59 207-265 37-109 (157)
128 PF13949 ALIX_LYPXL_bnd: ALIX 34.1 3.3E+02 0.0071 24.0 15.4 76 142-228 191-266 (296)
129 PF11365 DUF3166: Protein of u 33.7 2.7E+02 0.0058 23.1 7.4 73 155-234 15-93 (96)
130 KOG4674 Uncharacterized conser 33.1 9.4E+02 0.02 29.0 15.3 160 121-293 274-450 (1822)
131 PLN02678 seryl-tRNA synthetase 32.6 2.8E+02 0.006 27.9 8.7 89 209-308 32-120 (448)
132 COG5466 Predicted small metal- 32.6 48 0.001 25.8 2.8 35 135-169 7-54 (59)
133 PRK10929 putative mechanosensi 32.2 7.9E+02 0.017 27.8 18.8 48 200-247 262-309 (1109)
134 KOG0978 E3 ubiquitin ligase in 31.9 6.9E+02 0.015 27.1 18.8 153 113-285 433-620 (698)
135 PF14728 PHTB1_C: PTHB1 C-term 31.7 1.9E+02 0.0041 28.3 7.3 35 192-234 190-224 (377)
136 PF06103 DUF948: Bacterial pro 30.7 2.4E+02 0.0051 21.3 7.4 58 219-286 21-78 (90)
137 PF03980 Nnf1: Nnf1 ; InterPr 30.5 1.4E+02 0.0031 23.3 5.2 32 151-182 76-107 (109)
138 PF06156 DUF972: Protein of un 30.3 2.1E+02 0.0045 23.6 6.3 18 197-214 37-54 (107)
139 PF15254 CCDC14: Coiled-coil d 30.2 1.8E+02 0.004 32.0 7.4 69 112-180 493-561 (861)
140 TIGR00514 accC acetyl-CoA carb 30.1 21 0.00045 33.7 0.5 25 24-48 408-432 (449)
141 PF05823 Gp-FAR-1: Nematode fa 30.1 1.2E+02 0.0025 26.0 5.0 80 130-222 13-92 (154)
142 TIGR02284 conserved hypothetic 29.5 3.3E+02 0.0071 22.6 9.7 98 159-258 30-139 (139)
143 PF07246 Phlebovirus_NSM: Phle 29.5 3E+02 0.0066 26.5 8.0 53 24-76 35-90 (264)
144 PF10354 DUF2431: Domain of un 29.1 21 0.00045 30.5 0.3 36 214-253 27-62 (166)
145 PF05769 DUF837: Protein of un 28.9 4.1E+02 0.009 23.5 10.8 25 224-248 70-94 (181)
146 PF10168 Nup88: Nuclear pore c 28.9 7.3E+02 0.016 26.4 11.4 59 158-229 561-619 (717)
147 PF10234 Cluap1: Clusterin-ass 28.9 5.2E+02 0.011 24.7 11.8 105 146-253 108-212 (267)
148 PRK14153 heat shock protein Gr 28.9 2.2E+02 0.0048 25.8 6.7 14 276-289 121-134 (194)
149 TIGR01005 eps_transp_fam exopo 28.9 6.4E+02 0.014 25.7 14.9 32 254-285 361-395 (754)
150 PF05911 DUF869: Plant protein 28.7 5.4E+02 0.012 27.9 10.5 107 136-248 573-690 (769)
151 PF00435 Spectrin: Spectrin re 28.5 2E+02 0.0044 19.8 6.5 66 217-293 34-100 (105)
152 PF10376 Mei5: Double-strand r 28.4 2.7E+02 0.0058 25.6 7.3 44 141-184 150-196 (221)
153 COG4026 Uncharacterized protei 28.4 3.1E+02 0.0068 26.7 7.9 42 201-242 133-174 (290)
154 TIGR00634 recN DNA repair prot 28.2 3E+02 0.0064 27.4 8.0 29 208-236 159-187 (563)
155 PF13094 CENP-Q: CENP-Q, a CEN 28.0 3.5E+02 0.0077 22.5 11.3 65 109-180 23-87 (160)
156 PF03980 Nnf1: Nnf1 ; InterPr 27.9 3E+02 0.0064 21.5 6.9 34 207-243 73-106 (109)
157 KOG0977 Nuclear envelope prote 27.7 7.4E+02 0.016 26.1 15.0 68 109-176 179-263 (546)
158 KOG2398 Predicted proline-seri 27.6 7.5E+02 0.016 26.1 11.7 17 215-231 151-167 (611)
159 PRK11637 AmiB activator; Provi 27.4 5.5E+02 0.012 24.5 18.1 35 149-183 97-131 (428)
160 PRK13169 DNA replication intia 27.4 3.2E+02 0.007 22.9 7.0 12 216-227 69-80 (110)
161 PF10473 CENP-F_leu_zip: Leuci 27.3 2.9E+02 0.0063 24.0 6.9 55 114-168 53-107 (140)
162 PRK04863 mukB cell division pr 27.1 1E+03 0.023 27.6 18.2 17 85-101 238-254 (1486)
163 PF05529 Bap31: B-cell recepto 27.0 3.9E+02 0.0085 22.7 8.5 95 115-231 95-189 (192)
164 PF06456 Arfaptin: Arfaptin-li 26.7 1.4E+02 0.0031 27.1 5.2 116 121-245 34-158 (229)
165 PF13874 Nup54: Nucleoporin co 25.8 3.9E+02 0.0085 22.2 7.6 47 204-250 80-126 (141)
166 PF08074 CHDCT2: CHDCT2 (NUC03 25.7 49 0.0011 30.2 2.0 27 147-175 123-149 (173)
167 PF15358 TSKS: Testis-specific 25.4 4.1E+02 0.0089 27.9 8.6 95 129-253 141-236 (558)
168 PRK11281 hypothetical protein; 25.1 1E+03 0.022 26.9 18.7 55 193-247 272-329 (1113)
169 COG5057 LAG1 Phosphotyrosyl ph 24.8 71 0.0015 31.8 3.1 49 34-82 30-82 (353)
170 PF05667 DUF812: Protein of un 24.7 8.2E+02 0.018 25.6 17.3 45 130-174 331-375 (594)
171 PF15070 GOLGA2L5: Putative go 24.7 8.3E+02 0.018 25.7 18.3 69 135-223 112-180 (617)
172 PRK13169 DNA replication intia 24.3 3.5E+02 0.0075 22.7 6.6 41 200-240 5-45 (110)
173 PRK15422 septal ring assembly 24.0 2.5E+02 0.0054 22.9 5.5 49 164-225 27-75 (79)
174 PF14932 HAUS-augmin3: HAUS au 24.0 5.5E+02 0.012 23.3 9.3 75 112-186 74-152 (256)
175 COG1842 PspA Phage shock prote 23.9 5.7E+02 0.012 23.5 12.1 95 126-220 91-186 (225)
176 PF15365 PNRC: Proline-rich nu 23.8 70 0.0015 24.1 2.2 18 24-41 40-57 (58)
177 KOG1043 Ca2+-binding transmemb 23.5 2.2E+02 0.0048 29.5 6.3 72 206-283 203-285 (499)
178 PF04859 DUF641: Plant protein 23.2 4.9E+02 0.011 22.5 7.5 75 84-176 55-129 (131)
179 TIGR02449 conserved hypothetic 22.9 2.5E+02 0.0053 21.9 5.1 33 225-257 29-61 (65)
180 PF15233 SYCE1: Synaptonemal c 22.7 1.7E+02 0.0038 25.8 4.8 100 68-180 8-107 (134)
181 PF01065 Adeno_hexon: Hexon, a 22.5 41 0.0009 34.6 1.1 18 196-213 272-291 (495)
182 PF10211 Ax_dynein_light: Axon 22.3 5.4E+02 0.012 22.6 8.5 49 127-180 111-159 (189)
183 PLN03229 acetyl-coenzyme A car 21.9 1.1E+03 0.024 26.0 12.3 37 197-233 643-682 (762)
184 PRK13922 rod shape-determining 21.8 4.2E+02 0.0091 23.6 7.1 53 149-211 56-108 (276)
185 PF07889 DUF1664: Protein of u 21.5 5.2E+02 0.011 22.1 11.0 41 126-183 35-75 (126)
186 TIGR01843 type_I_hlyD type I s 21.5 6E+02 0.013 22.9 16.5 41 140-180 129-169 (423)
187 KOG0980 Actin-binding protein 20.5 9.7E+02 0.021 27.2 10.6 107 164-285 342-478 (980)
188 PRK06800 fliH flagellar assemb 20.4 3.8E+02 0.0082 25.5 6.7 57 117-173 35-91 (228)
No 1
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=94.47 E-value=6.2 Score=39.87 Aligned_cols=68 Identities=15% Similarity=0.202 Sum_probs=32.2
Q ss_pred hhhHHHHHHhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccccccHHHHHHHHHhhhhh
Q 021279 217 DGYRSLKKKYKYVKEENTAMRATMEELGKKVEAGIDQILGFRQRIATKEEQEVDIEEEITALEGMFDS 284 (315)
Q Consensus 217 DgyRSlKrkyk~~qeEN~~i~~tme~~~~~V~aG~~~i~~fr~R~~~~~eq~~dIeeEisaLe~mfe~ 284 (315)
.-+..++.++...+.+...+...++.+..++..--.++..+.+.+......--++++++..+...+..
T Consensus 427 ~~~~~l~~~~~~l~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~l~~~~~~l~~l~~~l~~l~~~~~~ 494 (1164)
T TIGR02169 427 AAIAGIEAKINELEEEKEDKALEIKKQEWKLEQLAADLSKYEQELYDLKEEYDRVEKELSKLQRELAE 494 (1164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444555555555555555555555555554444445555444443333333344444444443333
No 2
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=93.62 E-value=6.4 Score=39.75 Aligned_cols=9 Identities=11% Similarity=0.231 Sum_probs=3.3
Q ss_pred HHHHHHhhH
Q 021279 164 INDFKAQNA 172 (315)
Q Consensus 164 i~DlkAQN~ 172 (315)
+.+++.+..
T Consensus 807 ~~~l~~~~~ 815 (1164)
T TIGR02169 807 VSRIEARLR 815 (1164)
T ss_pred HHHHHHHHH
Confidence 333333333
No 3
>PHA02562 46 endonuclease subunit; Provisional
Probab=92.45 E-value=10 Score=36.03 Aligned_cols=78 Identities=12% Similarity=0.180 Sum_probs=48.9
Q ss_pred hhhhhHHHHHHhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccccccHHHHHHHHHhhhhhhcchhhhh
Q 021279 215 SLDGYRSLKKKYKYVKEENTAMRATMEELGKKVEAGIDQILGFRQRIATKEEQEVDIEEEITALEGMFDSFNMKIKKH 292 (315)
Q Consensus 215 SiDgyRSlKrkyk~~qeEN~~i~~tme~~~~~V~aG~~~i~~fr~R~~~~~eq~~dIeeEisaLe~mfe~~~mKi~kh 292 (315)
.++++....++|..++.+=..++..+......+..-.+++...+..+..-.....++++|+..|+.-++.+.-.+...
T Consensus 321 ~i~~~~~~~~~~~~~~~~i~el~~~i~~~~~~i~~~~~~~~~l~~ei~~l~~~~~~~~~~l~~l~~~l~~~~~~~~~~ 398 (562)
T PHA02562 321 AIDELEEIMDEFNEQSKKLLELKNKISTNKQSLITLVDKAKKVKAAIEELQAEFVDNAEELAKLQDELDKIVKTKSEL 398 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHHHHHHHHHHHH
Confidence 344444555555555555555555555555555555666667777777777777778888888877777666555444
No 4
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=91.89 E-value=14 Score=36.64 Aligned_cols=112 Identities=16% Similarity=0.253 Sum_probs=73.8
Q ss_pred hhHhHHHHhhhccchhhhchHHHhhhhcCCCCCCCCCCcCCCCCCchHHHHHHHHHhHHHHHHHHHHHHHh-----hcch
Q 021279 67 ILDDVKTRIQKSQPVAKRSVAELRRCNTDLRPNRAPRDKKLCEPITDDKEKLRRQLSASLAARKSLEVLCS-----SLGK 141 (315)
Q Consensus 67 ILDdvk~RIqK~Qs~~krr~aeLRRCnTdLrp~~~P~DkKp~e~~~dekeklkkeL~ASlaArkSLe~mCS-----SLGK 141 (315)
++++|-.-+..++..=...+.||+.=+.+|.-..- .=+...+..+.+.|+.++...++.-.+|++.-- .+..
T Consensus 213 ~~~~iP~l~~~~~~~~P~ql~el~~gy~~m~~~gy---~~~~~~i~~~i~~l~~~i~~~~~~l~~l~l~~~~~~~~~i~~ 289 (569)
T PRK04778 213 IMEEIPELLKELQTELPDQLQELKAGYRELVEEGY---HLDHLDIEKEIQDLKEQIDENLALLEELDLDEAEEKNEEIQE 289 (569)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCC---CCCCCChHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHH
Confidence 44555555555666544678889888888876654 223456788999999999998887777665322 2222
Q ss_pred ---------hhhHhHHHHHHHhhhhhhHHHHHHHHHHhhHHHHHHHHHhHH
Q 021279 142 ---------EKEIMAGELARKVHELNEMEELINDFKAQNASLLAKVQNCAA 183 (315)
Q Consensus 142 ---------EKeIMA~ElaRKv~ELnemEeli~DlkAQN~~Ll~K~q~~a~ 183 (315)
|||+-|..-+ -+....+++.+..++.||..|...++.-..
T Consensus 290 ~Id~Lyd~lekE~~A~~~v--ek~~~~l~~~l~~~~e~~~~l~~Ei~~l~~ 338 (569)
T PRK04778 290 RIDQLYDILEREVKARKYV--EKNSDTLPDFLEHAKEQNKELKEEIDRVKQ 338 (569)
T ss_pred HHHHHHHHHHHHHHHHHHH--HHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2333333222 234556788889999999999888876654
No 5
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=91.50 E-value=17 Score=39.03 Aligned_cols=65 Identities=25% Similarity=0.285 Sum_probs=36.1
Q ss_pred chHHHHHHHHHhHHHHHHHHHHHHHhhcchhhhH-------hHHHHHHHhhhhhhHHHHHHHHHHhhHHHHH
Q 021279 112 TDDKEKLRRQLSASLAARKSLEVLCSSLGKEKEI-------MAGELARKVHELNEMEELINDFKAQNASLLA 176 (315)
Q Consensus 112 ~dekeklkkeL~ASlaArkSLe~mCSSLGKEKeI-------MA~ElaRKv~ELnemEeli~DlkAQN~~Ll~ 176 (315)
..+.+.++.++.+-....+.++--++++-.|.+. .-.++...-.+++..++-+.++++..+.+-.
T Consensus 715 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~ 786 (1163)
T COG1196 715 ERQLEELKRELAALEEELEQLQSRLEELEEELEELEEELEELQERLEELEEELESLEEALAKLKEEIEELEE 786 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445566666665555656666666665555544 3334455555555555555555555555443
No 6
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=91.15 E-value=18 Score=37.40 Aligned_cols=162 Identities=17% Similarity=0.230 Sum_probs=85.9
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHhhcchhhhHhHHHHHHHhhhhhhHHHHHHHHHHhhHHHHHHHHHhHHhhhhhccccc
Q 021279 114 DKEKLRRQLSASLAARKSLEVLCSSLGKEKEIMAGELARKVHELNEMEELINDFKAQNASLLAKVQNCAAEHKEKKCSAG 193 (315)
Q Consensus 114 ekeklkkeL~ASlaArkSLe~mCSSLGKEKeIMA~ElaRKv~ELnemEeli~DlkAQN~~Ll~K~q~~a~e~k~~~~s~~ 193 (315)
..++..++...-+.+...|+--|.+|.++.+-|-++|...-.+...++.-..++...++.|-........+..+.
T Consensus 144 qlE~~qkE~eeL~~~~~~Le~e~~~l~~~v~~l~~eL~~~~ee~e~L~~~~kel~~~~e~l~~E~~~L~~q~~e~----- 218 (546)
T PF07888_consen 144 QLEECQKEKEELLKENEQLEEEVEQLREEVERLEAELEQEEEEMEQLKQQQKELTESSEELKEERESLKEQLAEA----- 218 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----
Confidence 345666777777788888888888888888888888877766666665555555555554433222211111100
Q ss_pred ccccchhhHHhhHHHHHHHH---hhhhhhHH-----------HHHHhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021279 194 EIQGNAALQERNKALSEHLL---KSLDGYRS-----------LKKKYKYVKEENTAMRATMEELGKKVEAGIDQILGFRQ 259 (315)
Q Consensus 194 e~~gN~aLq~RNkaLSeqLl---KSiDgyRS-----------lKrkyk~~qeEN~~i~~tme~~~~~V~aG~~~i~~fr~ 259 (315)
..--..|.+..+.|..+.. +-++++.. ||.+++....+=..-..+......+..+=-++|+..++
T Consensus 219 -~~ri~~LEedi~~l~qk~~E~e~~~~~lk~~~~elEq~~~eLk~rLk~~~~~~~~~~~~~~~~~~e~e~LkeqLr~~qe 297 (546)
T PF07888_consen 219 -RQRIRELEEDIKTLTQKEKEQEKELDKLKELKAELEQLEAELKQRLKETVVQLKQEETQAQQLQQENEALKEQLRSAQE 297 (546)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHH
Confidence 0000122222333322221 11222221 22222222111111122233445566667777888888
Q ss_pred hhhhhccccccHHHHHHHHHhh
Q 021279 260 RIATKEEQEVDIEEEITALEGM 281 (315)
Q Consensus 260 R~~~~~eq~~dIeeEisaLe~m 281 (315)
++..+..+.+-..+|++.+-.+
T Consensus 298 ~lqaSqq~~~~L~~EL~~~~~~ 319 (546)
T PF07888_consen 298 QLQASQQEAELLRKELSDAVNV 319 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 8888877777777887766544
No 7
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=90.93 E-value=19 Score=36.16 Aligned_cols=9 Identities=22% Similarity=0.538 Sum_probs=3.5
Q ss_pred HHHHHHHHH
Q 021279 114 DKEKLRRQL 122 (315)
Q Consensus 114 ekeklkkeL 122 (315)
+.+.+++++
T Consensus 678 e~~~l~~~~ 686 (1179)
T TIGR02168 678 EIEELEEKI 686 (1179)
T ss_pred HHHHHHHHH
Confidence 333344333
No 8
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=89.39 E-value=32 Score=36.52 Aligned_cols=115 Identities=26% Similarity=0.287 Sum_probs=60.8
Q ss_pred CCCchHHHHHHHHHhHHHHHHHHHHHHHhhcchhhhHhHHHHHHHhhhhhhHHHHHHHHHHhhHHHHHHHHHhHH----h
Q 021279 109 EPITDDKEKLRRQLSASLAARKSLEVLCSSLGKEKEIMAGELARKVHELNEMEELINDFKAQNASLLAKVQNCAA----E 184 (315)
Q Consensus 109 e~~~dekeklkkeL~ASlaArkSLe~mCSSLGKEKeIMA~ElaRKv~ELnemEeli~DlkAQN~~Ll~K~q~~a~----e 184 (315)
|--..|++||++||.--= .-|+ .+++.| +---..|----++|+++.+=|+-|.+|...|.. +|.... +
T Consensus 261 El~~~EiqKL~qQL~qve-~EK~--~L~~~L----~e~Q~qLe~a~~als~q~eki~~L~e~l~aL~~-l~~~ke~~~~~ 332 (717)
T PF09730_consen 261 ELNLSEIQKLKQQLLQVE-REKS--SLLSNL----QESQKQLEHAQGALSEQQEKINRLTEQLDALRK-LQEDKEQQSAE 332 (717)
T ss_pred hcchHHHHHHHHHHHHHh-hHHH--HHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-hccchhhhhhh
Confidence 444679999999995321 1111 122222 111223333346788888888888888666544 443322 1
Q ss_pred h-hhhccc-------ccccccchhhHHhhHHHHHHHHhhhhhhHHHHHHhHHHHH
Q 021279 185 H-KEKKCS-------AGEIQGNAALQERNKALSEHLLKSLDGYRSLKKKYKYVKE 231 (315)
Q Consensus 185 ~-k~~~~s-------~~e~~gN~aLq~RNkaLSeqLlKSiDgyRSlKrkyk~~qe 231 (315)
. .+-.+| ++++.|+..|+.+-+..-.++...-+-+..||-+|...++
T Consensus 333 d~~~~~~s~~d~~~ye~Di~~~eiLe~Ky~vav~Ev~~Lk~ELk~Lk~k~~~~~~ 387 (717)
T PF09730_consen 333 DSEKERDSHEDGDYYEVDINGLEILECKYKVAVSEVIQLKAELKALKSKYNELEE 387 (717)
T ss_pred hcccccccccccchhhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1 111222 2334556667777666666665555555555555554443
No 9
>KOG0810 consensus SNARE protein Syntaxin 1 and related proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=89.06 E-value=13 Score=35.39 Aligned_cols=68 Identities=18% Similarity=0.345 Sum_probs=47.4
Q ss_pred hHHHHHHHHHHhhHHHHHHHHHhHH--hhhhhcccccccccchhhHHhhHHHHHHHHhhhhhhHHHHHHhHH
Q 021279 159 EMEELINDFKAQNASLLAKVQNCAA--EHKEKKCSAGEIQGNAALQERNKALSEHLLKSLDGYRSLKKKYKY 228 (315)
Q Consensus 159 emEeli~DlkAQN~~Ll~K~q~~a~--e~k~~~~s~~e~~gN~aLq~RNkaLSeqLlKSiDgyRSlKrkyk~ 228 (315)
.|+.++.+++++..++-.||-+.-. ++.+..+ +-..++..=+.|-.++|-.|.+.+..|+.+.-+|++
T Consensus 79 ~l~~~~~~~~~~a~~Ik~kL~~~e~~~~~~~~~~--~~~~~~r~rrtq~~~~~kkf~~~M~~f~~~~~~~r~ 148 (297)
T KOG0810|consen 79 KLESLVDEIRRRARKIKTKLKALEKENEADETQN--RSSAGLRTRRTQTSALSKKLKELMNEFNRTQSKYRE 148 (297)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccC--CCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5677777777777777777765543 2222211 333455566678889999999999999999888875
No 10
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=88.92 E-value=27 Score=35.05 Aligned_cols=17 Identities=18% Similarity=0.249 Sum_probs=7.4
Q ss_pred cchhhhhhhHHHHHHHH
Q 021279 26 LSFEGIAANVKLLLKLI 42 (315)
Q Consensus 26 ~slEGiatNvKLLLKLi 42 (315)
|.+.|-.++.+-+..++
T Consensus 112 ~~~~~~~~~~~~~~~~l 128 (1179)
T TIGR02168 112 YFINGQPCRLKDIQDLF 128 (1179)
T ss_pred eeECCCcccHHHHHHHH
Confidence 44555444433334443
No 11
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=88.82 E-value=20 Score=41.62 Aligned_cols=166 Identities=23% Similarity=0.267 Sum_probs=109.4
Q ss_pred chHHHHHHHHHhHHHHHHHHHHHHHhhcchhhhHhHHHHHHHhhhhhhHHHHHHHHHHhhHHHHHHH-------HHhHHh
Q 021279 112 TDDKEKLRRQLSASLAARKSLEVLCSSLGKEKEIMAGELARKVHELNEMEELINDFKAQNASLLAKV-------QNCAAE 184 (315)
Q Consensus 112 ~dekeklkkeL~ASlaArkSLe~mCSSLGKEKeIMA~ElaRKv~ELnemEeli~DlkAQN~~Ll~K~-------q~~a~e 184 (315)
-.+..+++.+++...-|. |.+-++|-+|-..+-|+-.||......++||.-|+..+-.++ |.+..+
T Consensus 100 ~~~~~~~~~~~~~l~~~~-------se~~~qkr~l~~~le~~~~ele~l~~~n~~l~~ql~ss~~~~~e~e~r~~e~~s~ 172 (1822)
T KOG4674|consen 100 SWEIDALKLENSQLRRAK-------SELQEQKRQLMELLERQKAELEALESENKDLNDQLKSSTKTLSELEARLQETQSE 172 (1822)
T ss_pred HHHHHHhhhhhHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555444433 445588999999999999999999999999999987765543 333332
Q ss_pred hhhhcccc----cccccchhhHHhhHHHHHHHHhhhhhhHHHHHH----h--------------HHHHHHhHHHHHHHHH
Q 021279 185 HKEKKCSA----GEIQGNAALQERNKALSEHLLKSLDGYRSLKKK----Y--------------KYVKEENTAMRATMEE 242 (315)
Q Consensus 185 ~k~~~~s~----~e~~gN~aLq~RNkaLSeqLlKSiDgyRSlKrk----y--------------k~~qeEN~~i~~tme~ 242 (315)
.- ++. .=.|.+.+|+-=|+-||..|.+.-|.|=++.|. | ...++-|-.+....++
T Consensus 173 ~v---s~q~k~~rl~QEksll~s~~~wL~~eL~~~~ekll~~~re~s~~~~~L~~~L~~~~~~~~~~q~~~~~l~q~~~e 249 (1822)
T KOG4674|consen 173 DV---SSQLKEERLEQEKSLLESENKWLSRELSKVNEKLLSLRREHSIEVEQLEEKLSDLKESLAELQEKNKSLKQQNEE 249 (1822)
T ss_pred HH---HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11 011 113788899999999999999999999888887 2 3333344444455555
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhccccccHHHHHHHHHhhhhhhcchhh
Q 021279 243 LGKKVEAGIDQILGFRQRIATKEEQEVDIEEEITALEGMFDSFNMKIK 290 (315)
Q Consensus 243 ~~~~V~aG~~~i~~fr~R~~~~~eq~~dIeeEisaLe~mfe~~~mKi~ 290 (315)
+...|.--..-|-..++--.+. ..-.+.||++=.+||+-|.=+..
T Consensus 250 Ls~~ie~~~~~ls~~k~t~~s~---~~kf~~El~~q~kL~eL~ks~~e 294 (1822)
T KOG4674|consen 250 LSKKIESLNLELSKLKDTAESS---EEKFEKELSTQKKLNELWKSKLE 294 (1822)
T ss_pred HHHHHHHHHHHHHHHHhhhHHH---HHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555555555566666633333 33477888888888877655443
No 12
>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed. It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].
Probab=88.46 E-value=22 Score=33.42 Aligned_cols=99 Identities=27% Similarity=0.414 Sum_probs=67.7
Q ss_pred CCCchHHHHHHHHHhHHHHHHHHHHHHHhhcchhhhHhHHHHHHHhhhhhhHHHHHHHHHHhhHHHHHHHHHhHHhhhhh
Q 021279 109 EPITDDKEKLRRQLSASLAARKSLEVLCSSLGKEKEIMAGELARKVHELNEMEELINDFKAQNASLLAKVQNCAAEHKEK 188 (315)
Q Consensus 109 e~~~dekeklkkeL~ASlaArkSLe~mCSSLGKEKeIMA~ElaRKv~ELnemEeli~DlkAQN~~Ll~K~q~~a~e~k~~ 188 (315)
+...-+++.+..+++....++.-||-+|--|-+.-..+--|--+...+- ++-=.++-+.-...|.-||....++...
T Consensus 53 ~~l~kek~~l~~E~~k~~~~k~KLE~LCRELQk~Nk~lkeE~~~~~~ee---e~kR~el~~kFq~~L~dIq~~~ee~~~~ 129 (309)
T PF09728_consen 53 EQLQKEKDQLQSELSKAILAKSKLESLCRELQKQNKKLKEESKRRAREE---EEKRKELSEKFQATLKDIQAQMEEQSER 129 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHhccch
Confidence 4446688899999999999999999999999998777766665554433 3333344455566778888888877743
Q ss_pred cccccccccchhhHHhhHHHHHHH
Q 021279 189 KCSAGEIQGNAALQERNKALSEHL 212 (315)
Q Consensus 189 ~~s~~e~~gN~aLq~RNkaLSeqL 212 (315)
+.. ..+-|..|+++-|.|.+|.
T Consensus 130 ~~k--~~~eN~~L~eKlK~l~eQy 151 (309)
T PF09728_consen 130 NIK--LREENEELREKLKSLIEQY 151 (309)
T ss_pred hHH--HHHHHHHHHHHHHHHHHHH
Confidence 222 3455666666666655554
No 13
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=88.37 E-value=39 Score=36.88 Aligned_cols=82 Identities=22% Similarity=0.248 Sum_probs=57.2
Q ss_pred HHhhhhhhHHH--HHHhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccccccHHHHHHHH--Hhhhhhhcc
Q 021279 212 LLKSLDGYRSL--KKKYKYVKEENTAMRATMEELGKKVEAGIDQILGFRQRIATKEEQEVDIEEEITAL--EGMFDSFNM 287 (315)
Q Consensus 212 LlKSiDgyRSl--Krkyk~~qeEN~~i~~tme~~~~~V~aG~~~i~~fr~R~~~~~eq~~dIeeEisaL--e~mfe~~~m 287 (315)
|.+.|+.|-.. -+.++..+.+-..+..+++++..++......|...++.+.......-++...|+-+ +.-+..+..
T Consensus 956 ~~~~i~~y~~~~~~~qL~~~e~el~~~~~~ie~le~e~~~l~~~i~~l~kel~~~~~~kr~l~dnL~~~~~~~~l~el~~ 1035 (1311)
T TIGR00606 956 YMKDIENKIQDGKDDYLKQKETELNTVNAQLEECEKHQEKINEDMRLMRQDIDTQKIQERWLQDNLTLRKRENELKEVEE 1035 (1311)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556666543 44566666666667788888888888888888888888887777777777777777 555666555
Q ss_pred hhhhhc
Q 021279 288 KIKKHI 293 (315)
Q Consensus 288 Ki~kh~ 293 (315)
.|....
T Consensus 1036 eI~~l~ 1041 (1311)
T TIGR00606 1036 ELKQHL 1041 (1311)
T ss_pred HHHHHH
Confidence 555433
No 14
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=88.01 E-value=31 Score=34.54 Aligned_cols=211 Identities=17% Similarity=0.235 Sum_probs=116.3
Q ss_pred hhHhHHHHhhhccchhhhchHHHhhhhcCCCCCCCCCCcCCCCCCchHHHHHHHHHhHHHHHHHHHHHHHhh--------
Q 021279 67 ILDDVKTRIQKSQPVAKRSVAELRRCNTDLRPNRAPRDKKLCEPITDDKEKLRRQLSASLAARKSLEVLCSS-------- 138 (315)
Q Consensus 67 ILDdvk~RIqK~Qs~~krr~aeLRRCnTdLrp~~~P~DkKp~e~~~dekeklkkeL~ASlaArkSLe~mCSS-------- 138 (315)
++++|-.-+..++..=...+.||+-=+-.+.-..- .=+...+..+.+.++.+|...++.-+.|++---+
T Consensus 209 ~~e~IP~l~~~l~~~~P~ql~eL~~gy~~m~~~gy---~l~~~~i~~~i~~i~~~l~~~~~~L~~l~l~~~~~~~~~i~~ 285 (560)
T PF06160_consen 209 IMEDIPKLYKELQKEFPDQLEELKEGYREMEEEGY---YLEHLDIEEEIEQIEEQLEEALALLKNLELDEVEEENEEIEE 285 (560)
T ss_pred HHHHhHHHHHHHHHHhHHHHHHHHHHHHHHHHCCC---CCCCCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 45555555555555555567777777766665543 2244567889999999999999877766543221
Q ss_pred -cchhhhHhHHHHHHH---hhhhhhHHHHHHHHHHhhHHHHHHHHHhHHhhhhhcccccccccchhhHHhhHHHHHHHHh
Q 021279 139 -LGKEKEIMAGELARK---VHELNEMEELINDFKAQNASLLAKVQNCAAEHKEKKCSAGEIQGNAALQERNKALSEHLLK 214 (315)
Q Consensus 139 -LGKEKeIMA~ElaRK---v~ELnemEeli~DlkAQN~~Ll~K~q~~a~e~k~~~~s~~e~~gN~aLq~RNkaLSeqLlK 214 (315)
+-.=-++|-.|+.-+ .+.+..+.++|..++.||..|...+......-. -+..+.+.-..++.+-+.|..++..
T Consensus 286 ~Id~lYd~le~E~~Ak~~V~~~~~~l~~~l~~~~~~~~~l~~e~~~v~~sY~---L~~~e~~~~~~l~~~l~~l~~~~~~ 362 (560)
T PF06160_consen 286 RIDQLYDILEKEVEAKKYVEKNLKELYEYLEHAKEQNKELKEELERVSQSYT---LNHNELEIVRELEKQLKELEKRYED 362 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC---CCchHHHHHHHHHHHHHHHHHHHHH
Confidence 111112333333221 235678889999999999999988876554110 1122333333444444444443333
Q ss_pred hhhhhHHHHHHhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccccccHHHHHHHHHhhhh
Q 021279 215 SLDGYRSLKKKYKYVKEENTAMRATMEELGKKVEAGIDQILGFRQRIATKEEQEVDIEEEITALEGMFD 283 (315)
Q Consensus 215 SiDgyRSlKrkyk~~qeEN~~i~~tme~~~~~V~aG~~~i~~fr~R~~~~~eq~~dIeeEisaLe~mfe 283 (315)
-.+.--.=+.-|-.++++=..+...|+++..+...-.+.+.++|..=....+.--.++.+|+...+..+
T Consensus 363 ~~~~i~~~~~~yS~i~~~l~~~~~~l~~ie~~q~~~~~~l~~L~~dE~~Ar~~l~~~~~~l~~ikR~le 431 (560)
T PF06160_consen 363 LEERIEEQQVPYSEIQEELEEIEEQLEEIEEEQEEINESLQSLRKDEKEAREKLQKLKQKLREIKRRLE 431 (560)
T ss_pred HHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 332222223335555555556666666666666666666666665333333333334444444444333
No 15
>PRK02224 chromosome segregation protein; Provisional
Probab=87.36 E-value=35 Score=34.67 Aligned_cols=17 Identities=12% Similarity=0.257 Sum_probs=7.4
Q ss_pred chhhhhhHHhhHhHHHHh
Q 021279 58 PQRIAGMITILDDVKTRI 75 (315)
Q Consensus 58 ~qRvagMmtILDdvk~RI 75 (315)
+.++.|+ ..|++++.++
T Consensus 155 i~~l~~l-~~~e~~~~~~ 171 (880)
T PRK02224 155 IDDLLQL-GKLEEYRERA 171 (880)
T ss_pred HHHHhCC-HHHHHHHHHH
Confidence 3344444 3444444443
No 16
>PHA02562 46 endonuclease subunit; Provisional
Probab=86.72 E-value=29 Score=32.95 Aligned_cols=25 Identities=4% Similarity=0.270 Sum_probs=13.0
Q ss_pred hhhhhHHHHHHHHHHhhHHHHHHHH
Q 021279 155 HELNEMEELINDFKAQNASLLAKVQ 179 (315)
Q Consensus 155 ~ELnemEeli~DlkAQN~~Ll~K~q 179 (315)
+++...++.+.++..|-.+|-.++.
T Consensus 299 ~~~~~l~d~i~~l~~~l~~l~~~i~ 323 (562)
T PHA02562 299 DRITKIKDKLKELQHSLEKLDTAID 323 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444555555555555555544
No 17
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=86.46 E-value=8.2 Score=42.74 Aligned_cols=71 Identities=30% Similarity=0.339 Sum_probs=48.3
Q ss_pred chhhHHhhHHHHHHHHhhhhhhHHHHHHhHHHHHHhHHHHHHHHHHHHHHHHHHHH-HHHHHHhhhhhccccccHHHHHH
Q 021279 198 NAALQERNKALSEHLLKSLDGYRSLKKKYKYVKEENTAMRATMEELGKKVEAGIDQ-ILGFRQRIATKEEQEVDIEEEIT 276 (315)
Q Consensus 198 N~aLq~RNkaLSeqLlKSiDgyRSlKrkyk~~qeEN~~i~~tme~~~~~V~aG~~~-i~~fr~R~~~~~eq~~dIeeEis 276 (315)
|.-|++-|+.|---|-+-||---- -++|-|++++++++-+ +-.|| |.+||++++.-++|--+...+-+
T Consensus 481 ~EQL~Esn~ele~DLreEld~~~g------~~kel~~r~~aaqet~-----yDrdqTI~KfRelva~Lqdqlqe~~dq~~ 549 (1243)
T KOG0971|consen 481 NEQLQESNRELELDLREELDMAKG------ARKELQKRVEAAQETV-----YDRDQTIKKFRELVAHLQDQLQELTDQQE 549 (1243)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhh------HHHHHHHHHHHHHHHH-----HhHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 456777788887778888874311 1245667777776654 34566 99999999999888666655554
Q ss_pred HHH
Q 021279 277 ALE 279 (315)
Q Consensus 277 aLe 279 (315)
.+|
T Consensus 550 Sse 552 (1243)
T KOG0971|consen 550 SSE 552 (1243)
T ss_pred hhH
Confidence 444
No 18
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=86.27 E-value=2.8 Score=40.07 Aligned_cols=71 Identities=25% Similarity=0.331 Sum_probs=48.7
Q ss_pred HHHHHHHhhhhh---hHHH-------HHHhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccccccHHHHHH
Q 021279 207 ALSEHLLKSLDG---YRSL-------KKKYKYVKEENTAMRATMEELGKKVEAGIDQILGFRQRIATKEEQEVDIEEEIT 276 (315)
Q Consensus 207 aLSeqLlKSiDg---yRSl-------Krkyk~~qeEN~~i~~tme~~~~~V~aG~~~i~~fr~R~~~~~eq~~dIeeEis 276 (315)
||--.=||+|-| |-.| |-|+.+.++||..++.-++++.-++++|-+||.+++ -|-|
T Consensus 115 AlvRAGLktL~~v~~~~d~ke~~ee~kekl~E~~~EkeeL~~eleele~e~ee~~erlk~le--------------~E~s 180 (290)
T COG4026 115 ALVRAGLKTLQRVPEYMDLKEDYEELKEKLEELQKEKEELLKELEELEAEYEEVQERLKRLE--------------VENS 180 (290)
T ss_pred HHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHH
Confidence 444444566653 3334 455566667999999999999999999999988754 4556
Q ss_pred HHHhhhhhhcchhhh
Q 021279 277 ALEGMFDSFNMKIKK 291 (315)
Q Consensus 277 aLe~mfe~~~mKi~k 291 (315)
.||.||..+.=++.+
T Consensus 181 ~LeE~~~~l~~ev~~ 195 (290)
T COG4026 181 RLEEMLKKLPGEVYD 195 (290)
T ss_pred HHHHHHHhchhHHHH
Confidence 666666655544443
No 19
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=85.46 E-value=25 Score=34.05 Aligned_cols=90 Identities=17% Similarity=0.299 Sum_probs=67.1
Q ss_pred hhHHhhHHHHHHHHhhhhhhHHHHHHhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh------hccccccHHH
Q 021279 200 ALQERNKALSEHLLKSLDGYRSLKKKYKYVKEENTAMRATMEELGKKVEAGIDQILGFRQRIAT------KEEQEVDIEE 273 (315)
Q Consensus 200 aLq~RNkaLSeqLlKSiDgyRSlKrkyk~~qeEN~~i~~tme~~~~~V~aG~~~i~~fr~R~~~------~~eq~~dIee 273 (315)
.++-|-|.|..||.-.+..||+.++++..++++=.....++.+...+.+-=.+++...++-|.. ..-.-|.|+.
T Consensus 256 kI~sREk~iN~qle~l~~eYr~~~~~ls~~~~~y~~~s~~V~~~t~~L~~IseeLe~vK~emeerg~~mtD~sPlv~IKq 335 (359)
T PF10498_consen 256 KIESREKYINNQLEPLIQEYRSAQDELSEVQEKYKQASEGVSERTRELAEISEELEQVKQEMEERGSSMTDGSPLVKIKQ 335 (359)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHH
Confidence 4678999999999999999999999999999988877777777776666656666666655432 2222347887
Q ss_pred HHHHHHhhhhhhcchh
Q 021279 274 EITALEGMFDSFNMKI 289 (315)
Q Consensus 274 EisaLe~mfe~~~mKi 289 (315)
=|+.|..=...++++|
T Consensus 336 Al~kLk~EI~qMdvrI 351 (359)
T PF10498_consen 336 ALTKLKQEIKQMDVRI 351 (359)
T ss_pred HHHHHHHHHHHhhhhh
Confidence 7777776666666665
No 20
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=84.73 E-value=45 Score=35.04 Aligned_cols=60 Identities=20% Similarity=0.294 Sum_probs=36.3
Q ss_pred HHHHHhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccccccHHHHHHHHHhhhh
Q 021279 221 SLKKKYKYVKEENTAMRATMEELGKKVEAGIDQILGFRQRIATKEEQEVDIEEEITALEGMFD 283 (315)
Q Consensus 221 SlKrkyk~~qeEN~~i~~tme~~~~~V~aG~~~i~~fr~R~~~~~eq~~dIeeEisaLe~mfe 283 (315)
++|.+-++...|=..+|+-|..-.+.+..--..++.+|... .|...|+|.=+++|-.|=|
T Consensus 542 ~~r~r~~~lE~E~~~lr~elk~kee~~~~~e~~~~~lr~~~---~e~~~~~e~L~~aL~amqd 601 (697)
T PF09726_consen 542 SCRQRRRQLESELKKLRRELKQKEEQIRELESELQELRKYE---KESEKDTEVLMSALSAMQD 601 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hhhhhhHHHHHHHHHHHHH
Confidence 45666666666666666666665555555545455555522 3344578877888776643
No 21
>KOG3684 consensus Ca2+-activated K+ channel proteins (intermediate/small conductance classes) [Inorganic ion transport and metabolism]
Probab=83.56 E-value=34 Score=35.25 Aligned_cols=126 Identities=22% Similarity=0.373 Sum_probs=88.1
Q ss_pred hHHHHHHHhhhhhhHHHHHHHHHHhhHHHHHHHHHhHHh--------hhhhcccccccccchhhHHhhHHHHHHHHhhhh
Q 021279 146 MAGELARKVHELNEMEELINDFKAQNASLLAKVQNCAAE--------HKEKKCSAGEIQGNAALQERNKALSEHLLKSLD 217 (315)
Q Consensus 146 MA~ElaRKv~ELnemEeli~DlkAQN~~Ll~K~q~~a~e--------~k~~~~s~~e~~gN~aLq~RNkaLSeqLlKSiD 217 (315)
.-+=+|||. ||+..|.-|++|-+.+. |-..+.|-||. +|-.+ .+.--+ +.|-+.---++|.+|-
T Consensus 332 lvAvisRKL-eLt~aEKhVhNFMmDtq-LTk~~KnAAA~VLqeTW~i~K~tr--l~~k~~----~~rlR~hQRkfL~AI~ 403 (489)
T KOG3684|consen 332 LVAVIARKL-ELTKAEKHVHNFMMDTQ-LTKEHKNAAANVLQETWLIYKHTK--LVSKGD----QARLRKHQRKFLQAIH 403 (489)
T ss_pred HHHHHHHHH-HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhh--hhcccc----hHHHHHHHHHHHHHHH
Confidence 567789996 89999999999976542 33444444442 11110 111111 3455666778999999
Q ss_pred hhHHHHHHhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccccccHHHHHHHHHhhhhhhcchhh
Q 021279 218 GYRSLKKKYKYVKEENTAMRATMEELGKKVEAGIDQILGFRQRIATKEEQEVDIEEEITALEGMFDSFNMKIK 290 (315)
Q Consensus 218 gyRSlKrkyk~~qeEN~~i~~tme~~~~~V~aG~~~i~~fr~R~~~~~eq~~dIeeEisaLe~mfe~~~mKi~ 290 (315)
-+||.|.+.+...|. -.+|-+++.-.+.--|.|...++ +.+ ++|+-|+.||+-.+.+.+-+.
T Consensus 404 ~fR~Vk~~qRkl~e~----~nsl~d~aK~~~~myd~~~~l~~---~q~----~le~qI~~Le~kl~~l~~~l~ 465 (489)
T KOG3684|consen 404 QFRSVKWEQRKLSEQ----ANSLVDLAKTQNDMYDLLQELHS---RQE----ELEKQIDTLESKLEALTASLS 465 (489)
T ss_pred HHHHHHHHHHHHHhh----cccHHHHHHHHHHHHHHHHHHHH---HHH----HHHHHHHHHHHHHHHHHHHHH
Confidence 999999998887764 35677788888888888998888 344 589999999988877655443
No 22
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=83.09 E-value=59 Score=36.97 Aligned_cols=149 Identities=22% Similarity=0.304 Sum_probs=75.9
Q ss_pred CCCchHHHHHHHHHhHHHHHHHHHHHHHhhcchhhhHhHHHHHHHhhhhhh----HHHHHHHHHHhhHHHHHHHHHhHHh
Q 021279 109 EPITDDKEKLRRQLSASLAARKSLEVLCSSLGKEKEIMAGELARKVHELNE----MEELINDFKAQNASLLAKVQNCAAE 184 (315)
Q Consensus 109 e~~~dekeklkkeL~ASlaArkSLe~mCSSLGKEKeIMA~ElaRKv~ELne----mEeli~DlkAQN~~Ll~K~q~~a~e 184 (315)
...+++-++|.++|+-- ..+|.++.-.+|++.| ..+-|.+|+-+-+++.+.+|.++..
T Consensus 774 ~~s~~~v~~le~~l~~~------------------~~~~~~~~~~~~~~ee~~~~lr~~~~~l~~~l~~~~~~~k~~~~~ 835 (1293)
T KOG0996|consen 774 GVSKESVEKLERALSKM------------------SDKARQHQEQLHELEERVRKLRERIPELENRLEKLTASVKRLAEL 835 (1293)
T ss_pred CCCHHHHHHHHHHHHHH------------------HHHHHHHHHHHHHHHHHHHHHHHhhHHHHhHHHHHHHHHHHHHHH
Confidence 33467778888777532 3556666666655443 4555666666777777777777763
Q ss_pred hhh--hc------ccccccccchhhHHhhHHHHHHHHhhhhhhHHHHHHhHHHHH------HhHHHHHHHHHHHH-HHHH
Q 021279 185 HKE--KK------CSAGEIQGNAALQERNKALSEHLLKSLDGYRSLKKKYKYVKE------ENTAMRATMEELGK-KVEA 249 (315)
Q Consensus 185 ~k~--~~------~s~~e~~gN~aLq~RNkaLSeqLlKSiDgyRSlKrkyk~~qe------EN~~i~~tme~~~~-~V~a 249 (315)
+.. +. ...-....+..|.++-+-++ -|++.|.++|| +=..+++.++.|+- .|-.
T Consensus 836 ~~~l~~~i~~~E~~~~k~~~d~~~l~~~~~~ie-----------~l~kE~e~~qe~~~Kk~~i~~lq~~i~~i~~e~~q~ 904 (1293)
T KOG0996|consen 836 IEYLESQIAELEAAVLKKVVDKKRLKELEEQIE-----------ELKKEVEELQEKAAKKARIKELQNKIDEIGGEKVQA 904 (1293)
T ss_pred HHHHHHHHHHHHHHhhhccCcHHHHHHHHHHHH-----------HHHHHHHHHHHhhhHHHHHHHHHHHHHHhhchhhHH
Confidence 221 00 01111223333333333332 36777777743 33457777777753 2322
Q ss_pred H-------HHHHHHHHHhh-------hhhccccccHHHHHHHHHhhhhhhc
Q 021279 250 G-------IDQILGFRQRI-------ATKEEQEVDIEEEITALEGMFDSFN 286 (315)
Q Consensus 250 G-------~~~i~~fr~R~-------~~~~eq~~dIeeEisaLe~mfe~~~ 286 (315)
- -+||..|-+-| .+.+---.-+...+++||++.+...
T Consensus 905 qk~kv~~~~~~~~~l~~~i~k~~~~i~~s~~~i~k~q~~l~~le~~~~~~e 955 (1293)
T KOG0996|consen 905 QKDKVEKINEQLDKLEADIAKLTVAIKTSDRNIAKAQKKLSELEREIEDTE 955 (1293)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhHHHHhcCcccHHHHHHHHHHHHHHHHHHH
Confidence 2 23333332222 2222222235667777777766544
No 23
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=83.06 E-value=73 Score=34.43 Aligned_cols=56 Identities=20% Similarity=0.319 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhccccccHHHHHHHHHhhhhhhcchhhhhcccc
Q 021279 241 EELGKKVEAGIDQILGFRQRIATKEEQEVDIEEEITALEGMFDSFNMKIKKHIQNK 296 (315)
Q Consensus 241 e~~~~~V~aG~~~i~~fr~R~~~~~eq~~dIeeEisaLe~mfe~~~mKi~kh~qkK 296 (315)
+.+.....-..+++..++..+......-..+.+++..++..+..++-.+..+.+.+
T Consensus 831 ~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~l~~~~~~~ 886 (1163)
T COG1196 831 EELEEEIEELEEKLDELEEELEELEKELEELKEELEELEAEKEELEDELKELEEEK 886 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333334444444433333333344444455555555555555554443
No 24
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=81.77 E-value=81 Score=36.02 Aligned_cols=26 Identities=35% Similarity=0.438 Sum_probs=12.0
Q ss_pred hhhhhHHHHHHHHHHhhHHHHHHHHH
Q 021279 155 HELNEMEELINDFKAQNASLLAKVQN 180 (315)
Q Consensus 155 ~ELnemEeli~DlkAQN~~Ll~K~q~ 180 (315)
|+.++.++-++-.+++...|.+.|+.
T Consensus 494 ~~~ke~~ek~~~~~~~~~~l~~~~~~ 519 (1317)
T KOG0612|consen 494 HEQKEVEEKLSEEEAKKRKLEALVRQ 519 (1317)
T ss_pred HhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444444444433
No 25
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=80.48 E-value=42 Score=29.88 Aligned_cols=138 Identities=20% Similarity=0.278 Sum_probs=75.4
Q ss_pred CCCchHHHHHHHHHhHHHHHHHHHHHHHhhcchhhhHhHHHHHHHhhh-----------------hhhHHHHHHHHHHhh
Q 021279 109 EPITDDKEKLRRQLSASLAARKSLEVLCSSLGKEKEIMAGELARKVHE-----------------LNEMEELINDFKAQN 171 (315)
Q Consensus 109 e~~~dekeklkkeL~ASlaArkSLe~mCSSLGKEKeIMA~ElaRKv~E-----------------LnemEeli~DlkAQN 171 (315)
...-.+...|++++...-++|-.|+--+-+|..|-..+-..--..+.+ -+++...+.|+++|-
T Consensus 99 ~~le~el~~lrk~ld~~~~~r~~le~~i~~L~eEl~fl~~~heeEi~~L~~~~~~~~~~e~~~~~~~dL~~~L~eiR~~y 178 (312)
T PF00038_consen 99 KDLEEELESLRKDLDEETLARVDLENQIQSLKEELEFLKQNHEEEIEELREQIQSSVTVEVDQFRSSDLSAALREIRAQY 178 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSTT----------------HHHHHHHHHHHH
T ss_pred HHHHHHHhhhhhhhhhhhhhHhHHHHHHHHHHHHHHHHHhhhhhhhhhhhhccccccceeecccccccchhhhhhHHHHH
Confidence 344678888999999999999999999999988765443222111111 245666778888888
Q ss_pred HHHHHHHHHhHHhhhhhcccccccccchhhHHhhHHHHHHHHhhhhhhHHHHHHhHHHHHHhHHHHHHHHHHHHHH
Q 021279 172 ASLLAKVQNCAAEHKEKKCSAGEIQGNAALQERNKALSEHLLKSLDGYRSLKKKYKYVKEENTAMRATMEELGKKV 247 (315)
Q Consensus 172 ~~Ll~K~q~~a~e~k~~~~s~~e~~gN~aLq~RNkaLSeqLlKSiDgyRSlKrkyk~~qeEN~~i~~tme~~~~~V 247 (315)
+..+.+-...+...-+.+......+.. .-..-...+.+.+...=--+.+|...+..++..|.++..++.++....
T Consensus 179 e~~~~~~~~e~e~~y~~k~~~l~~~~~-~~~~~~~~~~~E~~~~r~~~~~l~~el~~l~~~~~~Le~~l~~le~~~ 253 (312)
T PF00038_consen 179 EEIAQKNREELEEWYQSKLEELRQQSE-KSSEELESAKEELKELRRQIQSLQAELESLRAKNASLERQLRELEQRL 253 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhhhhhhhhhccccccccccccc-ccccccchhHhHHHHHHhhhhHhhhhhhccccchhhhhhhHHHHHHHH
Confidence 877777766555443322211111000 000111112222222222334555566666666776666666554433
No 26
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=79.70 E-value=19 Score=36.76 Aligned_cols=79 Identities=24% Similarity=0.187 Sum_probs=56.4
Q ss_pred hHHHHHHHHhhhhhhHHHHHHh-------HHHHHHhHHHHHHHHHHHHHHH--------HHHHHHHHHHHhhhhhccccc
Q 021279 205 NKALSEHLLKSLDGYRSLKKKY-------KYVKEENTAMRATMEELGKKVE--------AGIDQILGFRQRIATKEEQEV 269 (315)
Q Consensus 205 NkaLSeqLlKSiDgyRSlKrky-------k~~qeEN~~i~~tme~~~~~V~--------aG~~~i~~fr~R~~~~~eq~~ 269 (315)
--++|+|+.+----||++|.|| .++||||+++..-.-...-.+. +--+||+ |-++|+...+|.+
T Consensus 29 ~s~~~aq~~~~~a~~~ai~a~~~~~E~~l~~Lq~e~~~l~e~~v~~~a~~~~~t~~~~~~en~~~r-~~~eir~~~~q~~ 107 (459)
T KOG0288|consen 29 QSRLSAQLVILRAESRAIKAKLQEKELELNRLQEENTQLNEERVREEATEKTLTVDVLIAENLRIR-SLNEIRELREQKA 107 (459)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhhh
Confidence 3468899999999999999987 4689999998754333211111 2223444 4467888999999
Q ss_pred cHHHHHHHHHhhhhh
Q 021279 270 DIEEEITALEGMFDS 284 (315)
Q Consensus 270 dIeeEisaLe~mfe~ 284 (315)
++++-.-+|+.|...
T Consensus 108 e~~n~~~~l~~~~~~ 122 (459)
T KOG0288|consen 108 EFENAELALREMRRK 122 (459)
T ss_pred hhccchhhHHHHHHH
Confidence 999988888887653
No 27
>KOG0243 consensus Kinesin-like protein [Cytoskeleton]
Probab=79.31 E-value=44 Score=37.15 Aligned_cols=98 Identities=24% Similarity=0.345 Sum_probs=56.1
Q ss_pred CchHHHHHHHHHhHHHHHHHHHH--HHHh---hcchhhhHhHHHHHHHhhhhhhHHHHHHHHHHhhHHHHHHHHHhHHhh
Q 021279 111 ITDDKEKLRRQLSASLAARKSLE--VLCS---SLGKEKEIMAGELARKVHELNEMEELINDFKAQNASLLAKVQNCAAEH 185 (315)
Q Consensus 111 ~~dekeklkkeL~ASlaArkSLe--~mCS---SLGKEKeIMA~ElaRKv~ELnemEeli~DlkAQN~~Ll~K~q~~a~e~ 185 (315)
..+|++|||+.|.| ||.=-- |-=. ..-+|++-|+..|=..-.||...++.|.+|.+..-.
T Consensus 409 ~~~EIerLK~dl~A---aReKnGvyisee~y~~~e~e~~~~~~~ieele~el~~~~~~l~~~~e~~~~------------ 473 (1041)
T KOG0243|consen 409 LYEEIERLKRDLAA---AREKNGVYISEERYTQEEKEKKEMAEQIEELEEELENLEKQLKDLTELYMN------------ 473 (1041)
T ss_pred HHHHHHHHHHHHHH---hHhhCceEechHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh------------
Confidence 46899999999965 442110 0001 123456666666666666666666666666655421
Q ss_pred hhhcccccccccchhhHHhhHHHHHHHHhhhhhhHHHHHHhHHHHH
Q 021279 186 KEKKCSAGEIQGNAALQERNKALSEHLLKSLDGYRSLKKKYKYVKE 231 (315)
Q Consensus 186 k~~~~s~~e~~gN~aLq~RNkaLSeqLlKSiDgyRSlKrkyk~~qe 231 (315)
...-|.-|.++-..|-++|..+.--+++++..|..++.
T Consensus 474 --------~~~~~~~l~~~~~~~k~~L~~~~~el~~~~ee~~~~~~ 511 (1041)
T KOG0243|consen 474 --------QLEIKELLKEEKEKLKSKLQNKNKELESLKEELQQAKA 511 (1041)
T ss_pred --------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11223445555566666666666666666666665543
No 28
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=79.25 E-value=87 Score=32.81 Aligned_cols=61 Identities=25% Similarity=0.381 Sum_probs=31.9
Q ss_pred hhhhhHHhhHhHHHHhhhccchhh------hchHHHhh-------hhcCCCCCCCCCCcCCCCCCchHHHHHHHHHh
Q 021279 60 RIAGMITILDDVKTRIQKSQPVAK------RSVAELRR-------CNTDLRPNRAPRDKKLCEPITDDKEKLRRQLS 123 (315)
Q Consensus 60 RvagMmtILDdvk~RIqK~Qs~~k------rr~aeLRR-------CnTdLrp~~~P~DkKp~e~~~dekeklkkeL~ 123 (315)
++......|+.++.++-+.+.... ..+++|+- |++.|.+.+ ++...+....+...++++++
T Consensus 418 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~CPvCg~~l~~~~---~~~~~~~~~~el~~l~~~i~ 491 (908)
T COG0419 418 ELEELERELEELEEEIKKLEEQINQLESKELMIAELAGAGEKCPVCGQELPEEH---EKELLELYELELEELEEELS 491 (908)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCCCcHH---HHHHHHHHHHHHHHHHHHHH
Confidence 445555567776766666544332 14667776 444444444 23222222235666666666
No 29
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=78.35 E-value=31 Score=33.44 Aligned_cols=85 Identities=25% Similarity=0.327 Sum_probs=70.0
Q ss_pred hhHhHHHHHHHhhhhhhHHHHHHHHHHhhHHHHHHHHHhHHhhhhhcccccccccchhhHHhhHHHHHHHHhhhhhhHHH
Q 021279 143 KEIMAGELARKVHELNEMEELINDFKAQNASLLAKVQNCAAEHKEKKCSAGEIQGNAALQERNKALSEHLLKSLDGYRSL 222 (315)
Q Consensus 143 KeIMA~ElaRKv~ELnemEeli~DlkAQN~~Ll~K~q~~a~e~k~~~~s~~e~~gN~aLq~RNkaLSeqLlKSiDgyRSl 222 (315)
---+.-|||+|..+.....|=|.-|-+|-..|=.|++..+.|+- .|.-+|.-+.|.-+.|
T Consensus 215 ia~LseELa~k~Ee~~rQQEEIt~LlsqivdlQ~r~k~~~~EnE--------------------eL~q~L~~ske~Q~~L 274 (306)
T PF04849_consen 215 IASLSEELARKTEENRRQQEEITSLLSQIVDLQQRCKQLAAENE--------------------ELQQHLQASKESQRQL 274 (306)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH--------------------HHHHHHHHHHHHHHHH
Confidence 34456799999999999999999999999999999988888643 5778888888888888
Q ss_pred HHHhHHHHHHhHHHHHHHHHHHHHH
Q 021279 223 KKKYKYVKEENTAMRATMEELGKKV 247 (315)
Q Consensus 223 Krkyk~~qeEN~~i~~tme~~~~~V 247 (315)
.-.+++.|+-+......|.+--.++
T Consensus 275 ~aEL~elqdkY~E~~~mL~EaQEEl 299 (306)
T PF04849_consen 275 QAELQELQDKYAECMAMLHEAQEEL 299 (306)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888888888888777777765543
No 30
>PRK10884 SH3 domain-containing protein; Provisional
Probab=77.36 E-value=40 Score=30.31 Aligned_cols=15 Identities=33% Similarity=0.596 Sum_probs=10.5
Q ss_pred hHHhhHHHHHHHHhh
Q 021279 201 LQERNKALSEHLLKS 215 (315)
Q Consensus 201 Lq~RNkaLSeqLlKS 215 (315)
|.++|..|.++|...
T Consensus 137 L~~~n~~L~~~l~~~ 151 (206)
T PRK10884 137 LKEENQKLKNQLIVA 151 (206)
T ss_pred HHHHHHHHHHHHHHH
Confidence 777777777777663
No 31
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=77.23 E-value=62 Score=30.07 Aligned_cols=175 Identities=21% Similarity=0.279 Sum_probs=105.5
Q ss_pred hhHhHHHHhhhccchhhhchHHHhhhhcCCCCCCCCCCcCCCCCCchHHHHHHHHHh-----HHHHHH--------HHHH
Q 021279 67 ILDDVKTRIQKSQPVAKRSVAELRRCNTDLRPNRAPRDKKLCEPITDDKEKLRRQLS-----ASLAAR--------KSLE 133 (315)
Q Consensus 67 ILDdvk~RIqK~Qs~~krr~aeLRRCnTdLrp~~~P~DkKp~e~~~dekeklkkeL~-----ASlaAr--------kSLe 133 (315)
+--+++.+|.-++..-. ++ .+..--+..|-=+.-..+.+|.+.-|+.|+. |.|-|+ +.++
T Consensus 76 ~c~EL~~~I~egr~~~~----~~---E~~~~~~nPpLf~EY~~a~~d~r~~m~~q~~~vK~~aRl~aK~~WYeWR~~ll~ 148 (325)
T PF08317_consen 76 SCRELKKYISEGRQIFE----EI---EEETYESNPPLFREYYTADPDMRLLMDNQFQLVKTYARLEAKKMWYEWRMQLLE 148 (325)
T ss_pred HHHHHHHHHHHHHHHHH----HH---HHHHhhcCCHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677888875543322 11 2222223333222234566888888888875 344444 3467
Q ss_pred HHHhhcchhhhHhHHHHHHHhhhhhhHHHHHHHHHHhhHHHHHHHHHhHHhhhhhcccccccccchhhHHhhHHHHHHHH
Q 021279 134 VLCSSLGKEKEIMAGELARKVHELNEMEELINDFKAQNASLLAKVQNCAAEHKEKKCSAGEIQGNAALQERNKALSEHLL 213 (315)
Q Consensus 134 ~mCSSLGKEKeIMA~ElaRKv~ELnemEeli~DlkAQN~~Ll~K~q~~a~e~k~~~~s~~e~~gN~aLq~RNkaLSeqLl 213 (315)
-+...|-...+.|-.+.+.-...++...+++.++.+..+.|..++.+.-.-..+ .+ .++ ++.-.+|-..|.
T Consensus 149 gl~~~L~~~~~~L~~D~~~L~~~~~~l~~~~~~l~~~~~~L~~e~~~Lk~~~~e-----~~-~~D---~~eL~~lr~eL~ 219 (325)
T PF08317_consen 149 GLKEGLEENLELLQEDYAKLDKQLEQLDELLPKLRERKAELEEELENLKQLVEE-----IE-SCD---QEELEALRQELA 219 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-----hh-hcC---HHHHHHHHHHHH
Confidence 788889999999999998888888888899999999999988888765552221 11 111 122233334444
Q ss_pred hhhhhhHHHHHHhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 021279 214 KSLDGYRSLKKKYKYVKEENTAMRATMEELGKKVEAGIDQILGF 257 (315)
Q Consensus 214 KSiDgyRSlKrkyk~~qeEN~~i~~tme~~~~~V~aG~~~i~~f 257 (315)
..=.-...+|+++.+.+.+-..+...++++......=..+|...
T Consensus 220 ~~~~~i~~~k~~l~el~~el~~l~~~i~~~~~~k~~l~~eI~e~ 263 (325)
T PF08317_consen 220 EQKEEIEAKKKELAELQEELEELEEKIEELEEQKQELLAEIAEA 263 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344566677777777666666666665555544444444433
No 32
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=77.22 E-value=40 Score=33.63 Aligned_cols=134 Identities=16% Similarity=0.173 Sum_probs=63.3
Q ss_pred hhhhHHHHHHHHHHhhHHHHHHHHHhHHhhhh-hcccccccccchhhHHhhHHHHHHHHhh----------hhhhHHHHH
Q 021279 156 ELNEMEELINDFKAQNASLLAKVQNCAAEHKE-KKCSAGEIQGNAALQERNKALSEHLLKS----------LDGYRSLKK 224 (315)
Q Consensus 156 ELnemEeli~DlkAQN~~Ll~K~q~~a~e~k~-~~~s~~e~~gN~aLq~RNkaLSeqLlKS----------iDgyRSlKr 224 (315)
+|...++-+.++..+-+.|-..+..-....+. .++...-..--..+++.|+.|...+-.- +..+|++..
T Consensus 276 ~l~~~~~~~~~i~~~Id~Lyd~lekE~~A~~~vek~~~~l~~~l~~~~e~~~~l~~Ei~~l~~sY~l~~~e~~~~~~lek 355 (569)
T PRK04778 276 DLDEAEEKNEEIQERIDQLYDILEREVKARKYVEKNSDTLPDFLEHAKEQNKELKEEIDRVKQSYTLNESELESVRQLEK 355 (569)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHccccCchhHHHHHHHHH
Confidence 44555555556666666555555443331111 1111111122233455555555443332 333667777
Q ss_pred HhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccccccHHHHHHHHHhhhhhhcchh
Q 021279 225 KYKYVKEENTAMRATMEELGKKVEAGIDQILGFRQRIATKEEQEVDIEEEITALEGMFDSFNMKI 289 (315)
Q Consensus 225 kyk~~qeEN~~i~~tme~~~~~V~aG~~~i~~fr~R~~~~~eq~~dIeeEisaLe~mfe~~~mKi 289 (315)
.++.+.+.-..+...+....+....=.+++..+.+++..-+++-.+|.+.|..|.+.-....=++
T Consensus 356 eL~~Le~~~~~~~~~i~~~~~~ysel~e~leel~e~leeie~eq~ei~e~l~~Lrk~E~eAr~kL 420 (569)
T PRK04778 356 QLESLEKQYDEITERIAEQEIAYSELQEELEEILKQLEEIEKEQEKLSEMLQGLRKDELEAREKL 420 (569)
T ss_pred HHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77666666665555544444443333444444555444444444555555555555444333333
No 33
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=76.05 E-value=62 Score=29.44 Aligned_cols=137 Identities=23% Similarity=0.369 Sum_probs=61.9
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHhhcchhhhHhHHHHHHHhhhhhhHHHHHHHHHHhhHHHHHHHHHhHHh---------
Q 021279 114 DKEKLRRQLSASLAARKSLEVLCSSLGKEKEIMAGELARKVHELNEMEELINDFKAQNASLLAKVQNCAAE--------- 184 (315)
Q Consensus 114 ekeklkkeL~ASlaArkSLe~mCSSLGKEKeIMA~ElaRKv~ELnemEeli~DlkAQN~~Ll~K~q~~a~e--------- 184 (315)
+.+.|.+.-...-.+...|+.--...-+|++-|+.+++..-.+...+++-+..--+....|-+.|...-..
T Consensus 48 ea~~Le~k~~eaee~~~rL~~~~~~~~eEk~~Le~e~~e~~~~i~~l~ee~~~ke~Ea~~lq~el~~ar~~~~~ak~~L~ 127 (246)
T PF00769_consen 48 EAEELEQKRQEAEEEKQRLEEEAEMQEEEKEQLEQELREAEAEIARLEEESERKEEEAEELQEELEEAREDEEEAKEELL 127 (246)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444445555555555556677888888777766666655555544333333333332221110
Q ss_pred ----------------h-----hhhccc----cccc--ccc---------hhhHHhhHHHHHHHHhhhhhhHHHHHHhHH
Q 021279 185 ----------------H-----KEKKCS----AGEI--QGN---------AALQERNKALSEHLLKSLDGYRSLKKKYKY 228 (315)
Q Consensus 185 ----------------~-----k~~~~s----~~e~--~gN---------~aLq~RNkaLSeqLlKSiDgyRSlKrkyk~ 228 (315)
+ ...... ..|. +|+ ...-++|+.|-+|| ..|+.-+..
T Consensus 128 ~~~~~~~~p~~~~v~~~~~~~~~~~~~~~~~~s~dl~~~~~~~~~sEeeR~t~~EKnk~lq~QL-------~~L~~EL~~ 200 (246)
T PF00769_consen 128 EVMSAPPPPPHHPVAEPDEGDEDENDEENSEYSADLETDGDMKDRSEEERVTYAEKNKRLQEQL-------KELKSELEQ 200 (246)
T ss_dssp ---HTTS--GGGS------------------EEEE---T-T--TCGGGC---HHHH-HHHHHHH-------HHHHHHHHT
T ss_pred HHHhccccccccCCCCCCCCCccccccccccccccccccccccchhHHHHHHHHHhhHHHHHHH-------HHHHHHHHH
Confidence 0 000000 0111 111 12345677777777 467777777
Q ss_pred HHHHhHHHHHHHHHHH-HHHHHHHHHHHHHHH
Q 021279 229 VKEENTAMRATMEELG-KKVEAGIDQILGFRQ 259 (315)
Q Consensus 229 ~qeEN~~i~~tme~~~-~~V~aG~~~i~~fr~ 259 (315)
++.++. .+.++.|. .-|.+|.|+..-+|+
T Consensus 201 ~kde~k--~T~~D~~h~en~~~g~~ky~tl~~ 230 (246)
T PF00769_consen 201 LKDEEK--QTQLDIIHAENVRAGRDKYKTLRQ 230 (246)
T ss_dssp TB-CCG----HHHHHHHHHHHTT--HHHHHHH
T ss_pred Hhhhhc--cchhHHHHHHHHHhchhHHHHHHH
Confidence 777776 56677776 569999999888876
No 34
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=75.48 E-value=1.2e+02 Score=32.51 Aligned_cols=91 Identities=21% Similarity=0.241 Sum_probs=68.9
Q ss_pred hhHHhhHHHHHHHHhhhhhhHHH-------HHHhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccccccHH
Q 021279 200 ALQERNKALSEHLLKSLDGYRSL-------KKKYKYVKEENTAMRATMEELGKKVEAGIDQILGFRQRIATKEEQEVDIE 272 (315)
Q Consensus 200 aLq~RNkaLSeqLlKSiDgyRSl-------Krkyk~~qeEN~~i~~tme~~~~~V~aG~~~i~~fr~R~~~~~eq~~dIe 272 (315)
-.|++|--|..||-+.-|-|=-| ..+|+-+.++=..+...+-.++--|++-..+|+.|+++....-...-.+.
T Consensus 465 d~Qeqn~kL~~el~ekdd~nfklm~e~~~~~q~~k~L~~ek~~l~~~i~~l~~~~~~~~~~i~~leeq~~~lt~~~~~l~ 544 (698)
T KOG0978|consen 465 DMQEQNQKLLQELREKDDKNFKLMSERIKANQKHKLLREEKSKLEEQILTLKASVDKLELKIGKLEEQERGLTSNESKLI 544 (698)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhhH
Confidence 48999999999999999988544 55677777777777777778888888888888888888777666666777
Q ss_pred HHHHHHHhhhhhhcchhh
Q 021279 273 EEITALEGMFDSFNMKIK 290 (315)
Q Consensus 273 eEisaLe~mfe~~~mKi~ 290 (315)
.|+.-+..-.+..+-++.
T Consensus 545 ~el~~~~~~le~~kk~~~ 562 (698)
T KOG0978|consen 545 KELTTLTQSLEMLKKKAQ 562 (698)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 777766666555544443
No 35
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=75.31 E-value=39 Score=29.62 Aligned_cols=67 Identities=21% Similarity=0.218 Sum_probs=48.5
Q ss_pred CchHHHHHHHHHhHHHHHHHHHHHHHhhcchhhhHhHHHHHHHhhhhhhHHHHHHHHHHhhHHHHHHHHHhHH
Q 021279 111 ITDDKEKLRRQLSASLAARKSLEVLCSSLGKEKEIMAGELARKVHELNEMEELINDFKAQNASLLAKVQNCAA 183 (315)
Q Consensus 111 ~~dekeklkkeL~ASlaArkSLe~mCSSLGKEKeIMA~ElaRKv~ELnemEeli~DlkAQN~~Ll~K~q~~a~ 183 (315)
-|-=..+++.++...++|-+.|---.-..|-.|.+.+. +..+++++-|.+|+.++..|-.+++....
T Consensus 82 RGlLL~rvrde~~~~l~~y~~l~~s~~~f~~rk~l~~e------~~~~~l~~~i~~L~~e~~~L~~~~~~l~~ 148 (189)
T PF10211_consen 82 RGLLLLRVRDEYRMTLDAYQTLYESSIAFGMRKALQAE------QGKQELEEEIEELEEEKEELEKQVQELKN 148 (189)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35566788888888888888776655566666666553 23567888888888888888877776544
No 36
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=74.85 E-value=1.8e+02 Score=34.60 Aligned_cols=34 Identities=29% Similarity=0.425 Sum_probs=15.1
Q ss_pred chhhhHhHHHHHHHhhhhhhHHHHHHHHHHhhHH
Q 021279 140 GKEKEIMAGELARKVHELNEMEELINDFKAQNAS 173 (315)
Q Consensus 140 GKEKeIMA~ElaRKv~ELnemEeli~DlkAQN~~ 173 (315)
...++=+..++++|--||+.|..=+.|..+.-..
T Consensus 1061 ~~~~~el~~~l~kke~El~~l~~k~e~e~~~~~~ 1094 (1930)
T KOG0161|consen 1061 KKQKEELDNQLKKKESELSQLQSKLEDEQAEVAQ 1094 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 3344444444444444444444444444433333
No 37
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=74.84 E-value=62 Score=28.85 Aligned_cols=43 Identities=33% Similarity=0.356 Sum_probs=36.2
Q ss_pred HHHHHHHHhhhhhhHHHHHHhHHHHHHhHHHHHHHHHHHHHHH
Q 021279 206 KALSEHLLKSLDGYRSLKKKYKYVKEENTAMRATMEELGKKVE 248 (315)
Q Consensus 206 kaLSeqLlKSiDgyRSlKrkyk~~qeEN~~i~~tme~~~~~V~ 248 (315)
+.|-++|-+|=+-||.+.+++++..++-..+.+++..+..-|.
T Consensus 71 r~Lr~~LR~~q~~~r~~~~klk~~~~el~k~~~~l~~L~~L~~ 113 (194)
T PF15619_consen 71 RVLRERLRKSQEQERELERKLKDKDEELLKTKDELKHLKKLSE 113 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5688899999999999999999999998888888877665444
No 38
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=74.64 E-value=27 Score=35.62 Aligned_cols=83 Identities=23% Similarity=0.386 Sum_probs=57.2
Q ss_pred hcchhhhHhHHHHHHHhhhhhhHHHHHHHHHHhhHHHHHHHHHhHHhhhhhcccccccccchhhHHhhHHHHHHHHhhhh
Q 021279 138 SLGKEKEIMAGELARKVHELNEMEELINDFKAQNASLLAKVQNCAAEHKEKKCSAGEIQGNAALQERNKALSEHLLKSLD 217 (315)
Q Consensus 138 SLGKEKeIMA~ElaRKv~ELnemEeli~DlkAQN~~Ll~K~q~~a~e~k~~~~s~~e~~gN~aLq~RNkaLSeqLlKSiD 217 (315)
.||-|-.--.--|+--|.++.+++.-+..+.+||+.|.+ .|..|+.|+..+..++...++
T Consensus 49 alGiegDTP~DTlrTlva~~k~~r~~~~~l~~~N~~l~~--------------------eN~~L~~r~~~id~~i~~av~ 108 (472)
T TIGR03752 49 ALGIEGDTPADTLRTLVAEVKELRKRLAKLISENEALKA--------------------ENERLQKREQSIDQQIQQAVQ 108 (472)
T ss_pred hcCCCCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------------HHHHHHHhhhhHHHHHHHHHH
Confidence 356565555566777788888999999999999988764 256788889999999999998
Q ss_pred hhH-HHHHHhHHHHHHhHHHHHHH
Q 021279 218 GYR-SLKKKYKYVKEENTAMRATM 240 (315)
Q Consensus 218 gyR-SlKrkyk~~qeEN~~i~~tm 240 (315)
++| .|......++++=.+++..+
T Consensus 109 ~~~~~~~~~~~ql~~~~~~~~~~l 132 (472)
T TIGR03752 109 SETQELTKEIEQLKSERQQLQGLI 132 (472)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHH
Confidence 887 33333333444433333333
No 39
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=73.25 E-value=93 Score=30.16 Aligned_cols=62 Identities=15% Similarity=0.247 Sum_probs=47.2
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccccccHHHHHHHHHhhhhhhcchhhhh
Q 021279 231 EENTAMRATMEELGKKVEAGIDQILGFRQRIATKEEQEVDIEEEITALEGMFDSFNMKIKKH 292 (315)
Q Consensus 231 eEN~~i~~tme~~~~~V~aG~~~i~~fr~R~~~~~eq~~dIeeEisaLe~mfe~~~mKi~kh 292 (315)
.|=.+++.-.+++-.+|..=.++++.|++-|...-.-.-.|..++..+-.+|-.+.-+|.-+
T Consensus 165 aei~~lk~~~~e~~eki~~la~eaqe~he~m~k~~~~~De~Rkeade~he~~ve~~~~~~e~ 226 (294)
T COG1340 165 AEIDELKKKAREIHEKIQELANEAQEYHEEMIKLFEEADELRKEADELHEEFVELSKKIDEL 226 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 44455666777788888888889999999888887777778888888888887776666543
No 40
>COG5074 t-SNARE complex subunit, syntaxin [Intracellular trafficking and secretion]
Probab=71.52 E-value=12 Score=35.95 Aligned_cols=64 Identities=27% Similarity=0.321 Sum_probs=42.4
Q ss_pred cccccchhhHHhhHHHHHHHHhhhhhh--------HHHHHHhHHHHHHhHHH---HHHHHHHHHHHHHHHHHHHHHHH
Q 021279 193 GEIQGNAALQERNKALSEHLLKSLDGY--------RSLKKKYKYVKEENTAM---RATMEELGKKVEAGIDQILGFRQ 259 (315)
Q Consensus 193 ~e~~gN~aLq~RNkaLSeqLlKSiDgy--------RSlKrkyk~~qeEN~~i---~~tme~~~~~V~aG~~~i~~fr~ 259 (315)
+++.---.|++++.++|-+|-.|||+| |++|.-.++++-.|-.+ ++--+..... =++.|+.||+
T Consensus 44 i~~~h~d~L~Ev~e~~~~~~~~~ldnf~s~t~~Lq~~~k~di~~~e~~~ihl~~k~aQae~~r~K---f~~~I~~yr~ 118 (280)
T COG5074 44 IDNLHKDLLTEVFEEQSRKLRRSLDNFSSQTTDLQRNLKKDIKSAERDGIHLANKQAQAENVRQK---FLKLIQDYRI 118 (280)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHH---HHHHHHHHHH
Confidence 334444689999999999999999999 55777777776655444 2222222222 2466777776
No 41
>PF08537 NBP1: Fungal Nap binding protein NBP1; InterPro: IPR013743 NBP1 is a nuclear protein which has been shown in Saccharomyces cerevisiae (Bakers yeast) to be essential for the G2/M transition of the cell cycle.
Probab=71.44 E-value=12 Score=36.56 Aligned_cols=57 Identities=18% Similarity=0.235 Sum_probs=47.5
Q ss_pred ccccccccchhhHHhhHHHHHHHHhhhhhhHHHHHHhHHHHHHhHHHHHHHHHHHHH
Q 021279 190 CSAGEIQGNAALQERNKALSEHLLKSLDGYRSLKKKYKYVKEENTAMRATMEELGKK 246 (315)
Q Consensus 190 ~s~~e~~gN~aLq~RNkaLSeqLlKSiDgyRSlKrkyk~~qeEN~~i~~tme~~~~~ 246 (315)
.++++.+.=.-||..+..|-++|-.--.--.+++++++.|||-|.-++..|++..++
T Consensus 169 ~~~~~~D~v~LLqkk~~~l~~~l~~~~~eL~~~~k~L~faqekn~LlqslLddaniD 225 (323)
T PF08537_consen 169 NPSSNSDRVILLQKKIDELEERLNDLEKELEITKKDLKFAQEKNALLQSLLDDANID 225 (323)
T ss_pred CCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccc
Confidence 344444555678999999999998888888999999999999999999999987654
No 42
>KOG0982 consensus Centrosomal protein Nuf [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=69.98 E-value=49 Score=34.19 Aligned_cols=142 Identities=24% Similarity=0.305 Sum_probs=0.0
Q ss_pred hHHHhhhhcCCCCCCCCCCcCCCCCCchHHHHHHHHHhHHHHHHHHHHHHHhhcchhhhHhHHHHHHHhhhhhhHHHHHH
Q 021279 86 VAELRRCNTDLRPNRAPRDKKLCEPITDDKEKLRRQLSASLAARKSLEVLCSSLGKEKEIMAGELARKVHELNEMEELIN 165 (315)
Q Consensus 86 ~aeLRRCnTdLrp~~~P~DkKp~e~~~dekeklkkeL~ASlaArkSLe~mCSSLGKEKeIMA~ElaRKv~ELnemEeli~ 165 (315)
.-+||-|-++| +-.++-..++++|+-.+|-+- +|++-| .-+++.-|+.-|-|--+|--.++|||-
T Consensus 313 ntelRs~~arl--------ksl~dklaee~qr~sd~LE~l-----rlql~~--eq~l~~rm~d~Lrrfq~ekeatqELie 377 (502)
T KOG0982|consen 313 NTELRSLIARL--------KSLADKLAEEDQRSSDLLEAL-----RLQLIC--EQKLRVRMNDILRRFQEEKEATQELIE 377 (502)
T ss_pred HHHHHHHHHHH--------HHHHHHHhhhhhhHHHHHHHH-----HHHHHH--HHHHHHHHHHHHHHHHHhhHHHHHHHH
Q ss_pred HHHHhhHHHHHHHHHhHHhhhhhccccccc-----------------ccchhhHHhhHHHHHHHHhh-------------
Q 021279 166 DFKAQNASLLAKVQNCAAEHKEKKCSAGEI-----------------QGNAALQERNKALSEHLLKS------------- 215 (315)
Q Consensus 166 DlkAQN~~Ll~K~q~~a~e~k~~~~s~~e~-----------------~gN~aLq~RNkaLSeqLlKS------------- 215 (315)
||..+-+.|-...-.|+- .-..+.|.-++ .-|.-|++---+||-|.+|+
T Consensus 378 elrkelehlr~~kl~~a~-p~rgrsSaRe~eleqevkrLrq~nr~l~eqneelngtilTls~q~lkn~ha~~~~~~Slaa 456 (502)
T KOG0982|consen 378 ELRKELEHLRRRKLVLAN-PVRGRSSAREIELEQEVKRLRQPNRILSEQNEELNGTILTLSTQFLKNWHATFSLFFSLAA 456 (502)
T ss_pred HHHHHHHHHHHHHHHhhc-cccCchhHHHHHHHHHHHHhccccchhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHH
Q ss_pred -hh--hhHHHHHHhHHHHHHhHHHHHHHHHH
Q 021279 216 -LD--GYRSLKKKYKYVKEENTAMRATMEEL 243 (315)
Q Consensus 216 -iD--gyRSlKrkyk~~qeEN~~i~~tme~~ 243 (315)
|| +---|-.-++.-.+.|++++.-|+-|
T Consensus 457 eid~~sqdeLmqafqeqeeiNfRL~~yid~i 487 (502)
T KOG0982|consen 457 EIDEMSQDELMQAFQEQEEINFRLKFYIDFI 487 (502)
T ss_pred HHHHHhHHHHHHHHHHHHHhhhHHHHHHhHH
No 43
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=69.45 E-value=1e+02 Score=29.95 Aligned_cols=41 Identities=20% Similarity=0.272 Sum_probs=32.9
Q ss_pred hhHHhhHHHHHHHHhhhhhhHHHHHHhHHHHHHhHHHHHHHHHHHHHH
Q 021279 200 ALQERNKALSEHLLKSLDGYRSLKKKYKYVKEENTAMRATMEELGKKV 247 (315)
Q Consensus 200 aLq~RNkaLSeqLlKSiDgyRSlKrkyk~~qeEN~~i~~tme~~~~~V 247 (315)
-.+++|+.|.+.+ -+|+.||.++|.+|--+|.++....+..
T Consensus 76 ~sre~Nk~L~~Ev-------~~Lrqkl~E~qGD~KlLR~~la~~r~~~ 116 (319)
T PF09789_consen 76 ESREQNKKLKEEV-------EELRQKLNEAQGDIKLLREKLARQRVGD 116 (319)
T ss_pred HHHHHHHHHHHHH-------HHHHHHHHHHhchHHHHHHHHHhhhhhh
Confidence 3467888887765 4789999999999999999998875544
No 44
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=69.03 E-value=1.3e+02 Score=30.07 Aligned_cols=107 Identities=23% Similarity=0.335 Sum_probs=47.0
Q ss_pred HHHhhhhhhHHHHHHHHHHhhH---HHHHHHHHhHHhhhhhcccccccccchhhHHhhHHHHHHHHhhhhhhHHHHHHhH
Q 021279 151 ARKVHELNEMEELINDFKAQNA---SLLAKVQNCAAEHKEKKCSAGEIQGNAALQERNKALSEHLLKSLDGYRSLKKKYK 227 (315)
Q Consensus 151 aRKv~ELnemEeli~DlkAQN~---~Ll~K~q~~a~e~k~~~~s~~e~~gN~aLq~RNkaLSeqLlKSiDgyRSlKrkyk 227 (315)
-.++..|+.--+...||+.+-+ .++..||......+. .+...+...++.+..++..|-..--..-..|..+.
T Consensus 224 e~~l~~L~~e~~~~k~Le~kL~~a~~~l~~Lq~El~~~~~-----~~l~~~~~~~~~~~~~~~~l~s~~~ELe~ak~~L~ 298 (522)
T PF05701_consen 224 EEELEELKEELEAAKDLESKLAEASAELESLQAELEAAKE-----SKLEEEAEAKEKSSELQSSLASAKKELEEAKKELE 298 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHhhhHHhhhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 3455666666666677766544 445555554443332 22222222233333333222222222223444455
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 021279 228 YVKEENTAMRATMEELGKKVEAGIDQILGFRQRIA 262 (315)
Q Consensus 228 ~~qeEN~~i~~tme~~~~~V~aG~~~i~~fr~R~~ 262 (315)
.+++|-..++.+++-+.-++.---.=|..+++|..
T Consensus 299 ~~k~E~~~L~~~vesL~~ELe~~K~el~~lke~e~ 333 (522)
T PF05701_consen 299 KAKEEASSLRASVESLRSELEKEKEELERLKEREK 333 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555555555555554444333223344444333
No 45
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=68.51 E-value=71 Score=26.89 Aligned_cols=71 Identities=24% Similarity=0.249 Sum_probs=35.0
Q ss_pred HHHHHHhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccc------------cccHHHHHHHHHhhhhhhcc
Q 021279 220 RSLKKKYKYVKEENTAMRATMEELGKKVEAGIDQILGFRQRIATKEEQ------------EVDIEEEITALEGMFDSFNM 287 (315)
Q Consensus 220 RSlKrkyk~~qeEN~~i~~tme~~~~~V~aG~~~i~~fr~R~~~~~eq------------~~dIeeEisaLe~mfe~~~m 287 (315)
.-++..+.+.+++-..++.-+..+..+-+..-.++..+++..+.-.-. -.+.+.+|..|+.-++.+.|
T Consensus 94 ~~l~~~l~~~~~~~~~~r~~l~~~k~~r~k~~~~~~~l~~~~~~~~~P~ll~Dy~~~~~~~~~l~~~i~~l~rk~~~l~~ 173 (177)
T PF13870_consen 94 ERLKQELKDREEELAKLREELYRVKKERDKLRKQNKKLRQQGGLLGVPALLRDYDKTKEEVEELRKEIKELERKVEILEM 173 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444444444444555555543331111 11245566677777777777
Q ss_pred hhh
Q 021279 288 KIK 290 (315)
Q Consensus 288 Ki~ 290 (315)
+|.
T Consensus 174 ~i~ 176 (177)
T PF13870_consen 174 RIK 176 (177)
T ss_pred hhc
Confidence 664
No 46
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=68.48 E-value=2.7 Score=42.52 Aligned_cols=70 Identities=17% Similarity=0.344 Sum_probs=0.0
Q ss_pred HHhhhhhhH-------HHHHHhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccccccHHHHHHHHHhhhhh
Q 021279 212 LLKSLDGYR-------SLKKKYKYVKEENTAMRATMEELGKKVEAGIDQILGFRQRIATKEEQEVDIEEEITALEGMFDS 284 (315)
Q Consensus 212 LlKSiDgyR-------SlKrkyk~~qeEN~~i~~tme~~~~~V~aG~~~i~~fr~R~~~~~eq~~dIeeEisaLe~mfe~ 284 (315)
|-..+..|| .||++.+..+|.|..+..+...+..++. +...|+..+...+.+-++++.+++....-.+.
T Consensus 313 lE~~ve~YKkKLed~~~lk~qvk~Lee~N~~l~e~~~~LEeel~----~~~~~~~qle~~k~qi~eLe~~l~~~~~~~~~ 388 (713)
T PF05622_consen 313 LENEVEKYKKKLEDLEDLKRQVKELEEDNAVLLETKAMLEEELK----KARALKSQLEEYKKQIQELEQKLSEESRRADK 388 (713)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444455555 5788888888888888777766666553 34455555555555555666555554444443
Q ss_pred h
Q 021279 285 F 285 (315)
Q Consensus 285 ~ 285 (315)
+
T Consensus 389 l 389 (713)
T PF05622_consen 389 L 389 (713)
T ss_dssp -
T ss_pred H
Confidence 3
No 47
>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]
Probab=67.58 E-value=66 Score=33.90 Aligned_cols=83 Identities=22% Similarity=0.249 Sum_probs=69.1
Q ss_pred HhHHHHHHHhhhhhhHHHHHHHHHHhhHHHHHHHHHhHHhhhhhcccccccccchhhHHhhHHHHHHHHhhhhhhHHHHH
Q 021279 145 IMAGELARKVHELNEMEELINDFKAQNASLLAKVQNCAAEHKEKKCSAGEIQGNAALQERNKALSEHLLKSLDGYRSLKK 224 (315)
Q Consensus 145 IMA~ElaRKv~ELnemEeli~DlkAQN~~Ll~K~q~~a~e~k~~~~s~~e~~gN~aLq~RNkaLSeqLlKSiDgyRSlKr 224 (315)
+|-.||+-|+.||+-.-|=++-|-+|...+-+|+..++.|.+ .|-++|.-++|.-|-|--
T Consensus 216 s~~eel~~kt~el~~q~Ee~skLlsql~d~qkk~k~~~~Eke--------------------el~~~Lq~~~da~~ql~a 275 (596)
T KOG4360|consen 216 SGQEELQSKTKELSRQQEENSKLLSQLVDLQKKIKYLRHEKE--------------------ELDEHLQAYKDAQRQLTA 275 (596)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH--------------------HHHHHHHHHHhhHHHHHH
Confidence 577788999999998888888898998888888888887544 578899999999999999
Q ss_pred HhHHHHHHhHHHHHHHHHHHHHH
Q 021279 225 KYKYVKEENTAMRATMEELGKKV 247 (315)
Q Consensus 225 kyk~~qeEN~~i~~tme~~~~~V 247 (315)
.+++.++.|...-.-+.+-.+++
T Consensus 276 E~~EleDkyAE~m~~~~EaeeEL 298 (596)
T KOG4360|consen 276 ELEELEDKYAECMQMLHEAEEEL 298 (596)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999887666666666554
No 48
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=67.51 E-value=1.1e+02 Score=31.69 Aligned_cols=108 Identities=16% Similarity=0.225 Sum_probs=63.7
Q ss_pred hhhhhHHHHHHHHHHhhHHHHHHHHHhHH-hhhhhcccccccccchhhHHhhHHHHHHHHhhhhhhHHHHHHhHHHHHHh
Q 021279 155 HELNEMEELINDFKAQNASLLAKVQNCAA-EHKEKKCSAGEIQGNAALQERNKALSEHLLKSLDGYRSLKKKYKYVKEEN 233 (315)
Q Consensus 155 ~ELnemEeli~DlkAQN~~Ll~K~q~~a~-e~k~~~~s~~e~~gN~aLq~RNkaLSeqLlKSiDgyRSlKrkyk~~qeEN 233 (315)
+.+++||. +.|..|++.+-.++++... ++. +--++-+-+.+...|++-=+-.--+-..++..+|+|
T Consensus 339 ~~~~e~~q--sqlen~k~~~e~~~~e~~~l~~~-----------~~~~e~~kk~~e~k~~q~q~k~~k~~kel~~~~E~n 405 (493)
T KOG0804|consen 339 QIMSEYEQ--SQLENQKQYYELLITEADSLKQE-----------SSDLEAEKKIVERKLQQLQTKLKKCQKELKEEREEN 405 (493)
T ss_pred HHHHHHHH--HHHHhHHHHHHHHHHHHHhhhhh-----------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556665 6888888888888888776 333 233455566666666665555566666777888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccccccHHHHHHHH
Q 021279 234 TAMRATMEELGKKVEAGIDQILGFRQRIATKEEQEVDIEEEITAL 278 (315)
Q Consensus 234 ~~i~~tme~~~~~V~aG~~~i~~fr~R~~~~~eq~~dIeeEisaL 278 (315)
..++.-....--.+.--.+|...+.. ..+++--|++|.+-.|
T Consensus 406 ~~l~knq~vw~~kl~~~~e~~~~~~~---s~d~~I~dLqEQlrDl 447 (493)
T KOG0804|consen 406 KKLIKNQDVWRGKLKELEEREKEALG---SKDEKITDLQEQLRDL 447 (493)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHhH
Confidence 88776554443333322233322222 4444444555555554
No 49
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=64.32 E-value=2e+02 Score=30.47 Aligned_cols=114 Identities=20% Similarity=0.339 Sum_probs=69.1
Q ss_pred HHHHHH-HhHHHHHHHHHHHHHhhcchhhhHhHHHHHHHhhhhhhHHHHHHHHHHhhHHHHHHHHHhHHhhhhhcccccc
Q 021279 116 EKLRRQ-LSASLAARKSLEVLCSSLGKEKEIMAGELARKVHELNEMEELINDFKAQNASLLAKVQNCAAEHKEKKCSAGE 194 (315)
Q Consensus 116 eklkke-L~ASlaArkSLe~mCSSLGKEKeIMA~ElaRKv~ELnemEeli~DlkAQN~~Ll~K~q~~a~e~k~~~~s~~e 194 (315)
+.|+.+ +----.||..++-=+..|-. +..+..++|.++++-+.+|..--+.|-+|+......|+
T Consensus 546 ~vlreeYi~~~~~ar~ei~~rv~~Lk~-------~~e~Ql~~L~~l~e~~~~l~~~ae~LaeR~e~a~d~Qe-------- 610 (717)
T PF10168_consen 546 KVLREEYIEKQDLAREEIQRRVKLLKQ-------QKEQQLKELQELQEERKSLRESAEKLAERYEEAKDKQE-------- 610 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------
Confidence 444444 23233455555544444433 33466777888888888888888888888777766665
Q ss_pred cccchhhHHhhHHHHHHHHhhh----hhhHHHHHHhHHHHHHhHHHHHHHHHHHHHHHH
Q 021279 195 IQGNAALQERNKALSEHLLKSL----DGYRSLKKKYKYVKEENTAMRATMEELGKKVEA 249 (315)
Q Consensus 195 ~~gN~aLq~RNkaLSeqLlKSi----DgyRSlKrkyk~~qeEN~~i~~tme~~~~~V~a 249 (315)
.|..|-+.+-..+...+ +.=|.++..++.++++-..|+..++++....+.
T Consensus 611 -----~L~~R~~~vl~~l~~~~P~LS~AEr~~~~EL~~~~~~l~~l~~si~~lk~k~~~ 664 (717)
T PF10168_consen 611 -----KLMKRVDRVLQLLNSQLPVLSEAEREFKKELERMKDQLQDLKASIEQLKKKLDY 664 (717)
T ss_pred -----HHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35666655554443211 223667777777777777777777776555543
No 50
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=62.66 E-value=1.4e+02 Score=28.06 Aligned_cols=118 Identities=20% Similarity=0.235 Sum_probs=69.8
Q ss_pred HHHHHHhhhhhhHHHHHHHHHHhhHHHHHHHHHhHHhhhhhcccccccccch---hhHHhhHHHHHHH--HhhhhhhHHH
Q 021279 148 GELARKVHELNEMEELINDFKAQNASLLAKVQNCAAEHKEKKCSAGEIQGNA---ALQERNKALSEHL--LKSLDGYRSL 222 (315)
Q Consensus 148 ~ElaRKv~ELnemEeli~DlkAQN~~Ll~K~q~~a~e~k~~~~s~~e~~gN~---aLq~RNkaLSeqL--lKSiDgyRSl 222 (315)
.++.|..|..++..+.+...+++-+.+-..+.+.-.+-..-.+ --.+++. .+.+|-+.+.++| .+.-+-|+.|
T Consensus 17 ~e~~rl~~~~~~~~~~l~k~~~e~e~~~~~~~~~~~e~e~le~--qv~~~e~ei~~~r~r~~~~e~kl~~v~~~~e~~aL 94 (239)
T COG1579 17 LEKDRLEPRIKEIRKALKKAKAELEALNKALEALEIELEDLEN--QVSQLESEIQEIRERIKRAEEKLSAVKDERELRAL 94 (239)
T ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHH
Confidence 4566666777766666666666655555544433221110000 0002222 2334444455555 1234668888
Q ss_pred HHHhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccc
Q 021279 223 KKKYKYVKEENTAMRATMEELGKKVEAGIDQILGFRQRIATKEEQ 267 (315)
Q Consensus 223 Krkyk~~qeEN~~i~~tme~~~~~V~aG~~~i~~fr~R~~~~~eq 267 (315)
.+..-.+++.=..+..-|.++-.++...-+.|...+.++......
T Consensus 95 ~~E~~~ak~r~~~le~el~~l~~~~~~l~~~i~~l~~~~~~~e~~ 139 (239)
T COG1579 95 NIEIQIAKERINSLEDELAELMEEIEKLEKEIEDLKERLERLEKN 139 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888888888878888888888888888888888888777665433
No 51
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=62.45 E-value=1.1e+02 Score=27.13 Aligned_cols=34 Identities=38% Similarity=0.527 Sum_probs=27.0
Q ss_pred CchHHHHHHHHHhHHHHHHHHHHHHHhhcchhhh
Q 021279 111 ITDDKEKLRRQLSASLAARKSLEVLCSSLGKEKE 144 (315)
Q Consensus 111 ~~dekeklkkeL~ASlaArkSLe~mCSSLGKEKe 144 (315)
...+.+.++.++...++.+++++-...+|-|+.+
T Consensus 80 l~~e~~~~r~k~e~e~~~~~~le~el~~lrk~ld 113 (312)
T PF00038_consen 80 LKEELEDLRRKYEEELAERKDLEEELESLRKDLD 113 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhh
Confidence 3567778888888889999999988888876655
No 52
>PF15254 CCDC14: Coiled-coil domain-containing protein 14
Probab=62.27 E-value=1.5e+02 Score=32.65 Aligned_cols=111 Identities=25% Similarity=0.326 Sum_probs=73.1
Q ss_pred cccccc---hhhHHhhHHHHHHHHhhhhhhHHHHHHhHH-------HHHHhHHHHHH------------------HHHHH
Q 021279 193 GEIQGN---AALQERNKALSEHLLKSLDGYRSLKKKYKY-------VKEENTAMRAT------------------MEELG 244 (315)
Q Consensus 193 ~e~~gN---~aLq~RNkaLSeqLlKSiDgyRSlKrkyk~-------~qeEN~~i~~t------------------me~~~ 244 (315)
+-.+|| +.||-.|..|--||..|+-+--.|.-|-.+ .++||..++.. +..|.
T Consensus 421 ~~~~~n~El~sLqSlN~~Lq~ql~es~k~~e~lq~kneellk~~e~q~~Enk~~~~~~~ekd~~l~~~kq~~d~e~~rik 500 (861)
T PF15254_consen 421 GSQDCNLELFSLQSLNMSLQNQLQESLKSQELLQSKNEELLKVIENQKEENKRLRKMFQEKDQELLENKQQFDIETTRIK 500 (861)
T ss_pred CCcccchhhHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 345566 579999999999999988888888755332 35777776654 44577
Q ss_pred HHHHHHHHHHHHHHHhhhhhc--cccccH-----HHHHHHHHhhhhhhcchhhhhcc---cccccCCCC
Q 021279 245 KKVEAGIDQILGFRQRIATKE--EQEVDI-----EEEITALEGMFDSFNMKIKKHIQ---NKSDCGKPK 303 (315)
Q Consensus 245 ~~V~aG~~~i~~fr~R~~~~~--eq~~dI-----eeEisaLe~mfe~~~mKi~kh~q---kKs~c~kpk 303 (315)
+||+-.+-...+|+-.+...+ .+...| ..||..|..|-..|-.-..+-.- .-+.|.||.
T Consensus 501 ~ev~eal~~~k~~q~kLe~sekEN~iL~itlrQrDaEi~RL~eLtR~LQ~Sma~lL~dls~D~ar~Kp~ 569 (861)
T PF15254_consen 501 IEVEEALVNVKSLQFKLEASEKENQILGITLRQRDAEIERLRELTRTLQNSMAKLLSDLSVDSARCKPG 569 (861)
T ss_pred HHHHHHHHHHHHHhhhHHHHHhhhhHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccCCc
Confidence 788888888877776654432 222222 46888888887777655544332 234444443
No 53
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=61.80 E-value=2e+02 Score=32.46 Aligned_cols=107 Identities=21% Similarity=0.249 Sum_probs=47.0
Q ss_pred HHHHhhhhhhHHHHHHHHHHhhHHHHHHHHHhHHhhhhhc--ccccccccchhhHHhhHHHHH---HHHhhhhhhHHHHH
Q 021279 150 LARKVHELNEMEELINDFKAQNASLLAKVQNCAAEHKEKK--CSAGEIQGNAALQERNKALSE---HLLKSLDGYRSLKK 224 (315)
Q Consensus 150 laRKv~ELnemEeli~DlkAQN~~Ll~K~q~~a~e~k~~~--~s~~e~~gN~aLq~RNkaLSe---qLlKSiDgyRSlKr 224 (315)
|.-++.+|+..++.|.+.+.--++|-+++.+.-.....-+ -+.++.+-+....+= .+-.+ -+-+++|+| +|
T Consensus 276 V~~~~~ql~~~~~~i~~~qek~~~l~~ki~~~~~k~~~~r~k~teiea~i~~~~~e~-~~~d~Ei~~~r~~~~~~---~r 351 (1074)
T KOG0250|consen 276 VNEVERQLNNQEEEIKKKQEKVDTLQEKIEEKQGKIEEARQKLTEIEAKIGELKDEV-DAQDEEIEEARKDLDDL---RR 351 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhh-hhhhHHHHHHHHHHHHH---HH
Confidence 3344455555555555555555555555444333222111 122222222222111 11122 234444444 45
Q ss_pred HhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 021279 225 KYKYVKEENTAMRATMEELGKKVEAGIDQILGFRQR 260 (315)
Q Consensus 225 kyk~~qeEN~~i~~tme~~~~~V~aG~~~i~~fr~R 260 (315)
.+-+++++=+.++.-|++....|..==-+|..|+..
T Consensus 352 e~~~~~~~~~~~~n~i~~~k~~~d~l~k~I~~~~~~ 387 (1074)
T KOG0250|consen 352 EVNDLKEEIREIENSIRKLKKEVDRLEKQIADLEKQ 387 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555555555555555555555544445544443
No 54
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=60.94 E-value=76 Score=24.59 Aligned_cols=33 Identities=18% Similarity=0.327 Sum_probs=25.1
Q ss_pred hHHHHHHHHhhhhhhHHHHHHhHHHHHHhHHHH
Q 021279 205 NKALSEHLLKSLDGYRSLKKKYKYVKEENTAMR 237 (315)
Q Consensus 205 NkaLSeqLlKSiDgyRSlKrkyk~~qeEN~~i~ 237 (315)
+..|-.++...||-|..|+.+....+++|.++.
T Consensus 6 l~~LE~ki~~aveti~~Lq~e~eeLke~n~~L~ 38 (72)
T PF06005_consen 6 LEQLEEKIQQAVETIALLQMENEELKEKNNELK 38 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 456777788888888888888888888755544
No 55
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=60.81 E-value=13 Score=37.82 Aligned_cols=126 Identities=25% Similarity=0.411 Sum_probs=27.6
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHhhcchhhhHhHHH--HHHHhhhhhhHHHHHHHHHHhhHHHHHHHHHhHHhhhhhcccc
Q 021279 115 KEKLRRQLSASLAARKSLEVLCSSLGKEKEIMAGE--LARKVHELNEMEELINDFKAQNASLLAKVQNCAAEHKEKKCSA 192 (315)
Q Consensus 115 keklkkeL~ASlaArkSLe~mCSSLGKEKeIMA~E--laRKv~ELnemEeli~DlkAQN~~Ll~K~q~~a~e~k~~~~s~ 192 (315)
+.+|.+++.-..==+..|-.+--|+.+|-..|... .+.++.++.+|+..+...+++.+..+..+..-....+. .
T Consensus 401 ~~RLerq~~L~~kE~d~LR~~L~syd~e~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ele~~l~~l~~~l~~~k~-~--- 476 (722)
T PF05557_consen 401 IRRLERQKALATKERDYLRAQLKSYDKEETTMNPSEQDTQRIKEIEDLEQLVDEYKAELEAQLEELEEELSEQKQ-R--- 476 (722)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhccccCchhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc-c---
Confidence 34444444333333445555556666665555433 45667777777777777777766666666655543332 1
Q ss_pred cccccchhhHHhhHHHHHHHHh-------hhhhhHHHHHHhHHHHHHhHHHHHHHHHHHHHHHH
Q 021279 193 GEIQGNAALQERNKALSEHLLK-------SLDGYRSLKKKYKYVKEENTAMRATMEELGKKVEA 249 (315)
Q Consensus 193 ~e~~gN~aLq~RNkaLSeqLlK-------SiDgyRSlKrkyk~~qeEN~~i~~tme~~~~~V~a 249 (315)
|..+...-+.+.+++.. +-..+..|++++..++.||..++..+..+...+.-
T Consensus 477 -----~~~~~~e~~~~~~~~~~~~~~~~~~~e~~~~L~~~~~~Le~e~~~L~~~~~~Le~~l~~ 535 (722)
T PF05557_consen 477 -----NETLEAELKSLKEQLSSNDRSLSSLSEELNELQKEIEELERENERLRQELEELESELEK 535 (722)
T ss_dssp ----------------------HHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -----ccchhhhhhhhhhhhhhccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11121111222222221 22346678999999999999999998888877764
No 56
>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only]
Probab=60.76 E-value=30 Score=37.67 Aligned_cols=87 Identities=22% Similarity=0.152 Sum_probs=71.5
Q ss_pred HHHHHHHhhhhhhHHHHHHHHHHhhHHHHHHHHHhHHhhhhhcccccccccchhhHHhhHHHHHHHHhhhhhhHHHHHHh
Q 021279 147 AGELARKVHELNEMEELINDFKAQNASLLAKVQNCAAEHKEKKCSAGEIQGNAALQERNKALSEHLLKSLDGYRSLKKKY 226 (315)
Q Consensus 147 A~ElaRKv~ELnemEeli~DlkAQN~~Ll~K~q~~a~e~k~~~~s~~e~~gN~aLq~RNkaLSeqLlKSiDgyRSlKrky 226 (315)
-.+||+|=.++--+||-.--|..+-+-+-.+++.-.. ++---.-|+-||.||++|.-+=++|-.----+.+.|
T Consensus 97 E~~Lankda~lrq~eekn~slqerLelaE~~l~qs~r-------ae~lpeveael~qr~~al~~aee~~~~~eer~~kl~ 169 (916)
T KOG0249|consen 97 ENELANKDADLRQNEEKNRSLQERLELAEPKLQQSLR-------AETLPEVEAELAQRNAALTKAEEHSGNIEERTRKLE 169 (916)
T ss_pred HHHHhCcchhhchhHHhhhhhhHHHHHhhHhhHhHHh-------hhhhhhhHHHHHHHHHHHHHHHHhhccHHHHHHHHH
Confidence 4678899999999999888888888877778776544 123345688999999999999999988888899999
Q ss_pred HHHHHHhHHHHHHH
Q 021279 227 KYVKEENTAMRATM 240 (315)
Q Consensus 227 k~~qeEN~~i~~tm 240 (315)
..++++|..++++-
T Consensus 170 ~~~qe~naeL~rar 183 (916)
T KOG0249|consen 170 EQLEELNAELQRAR 183 (916)
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999998763
No 57
>PRK10884 SH3 domain-containing protein; Provisional
Probab=59.99 E-value=1.3e+02 Score=27.08 Aligned_cols=19 Identities=26% Similarity=0.370 Sum_probs=9.6
Q ss_pred HHHHHHHHhhHHHHHHHHH
Q 021279 162 ELINDFKAQNASLLAKVQN 180 (315)
Q Consensus 162 eli~DlkAQN~~Ll~K~q~ 180 (315)
+.+-.+++|.+.|-+++.+
T Consensus 93 ~rlp~le~el~~l~~~l~~ 111 (206)
T PRK10884 93 TRVPDLENQVKTLTDKLNN 111 (206)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3444455555555555544
No 58
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=59.77 E-value=89 Score=30.36 Aligned_cols=147 Identities=24% Similarity=0.288 Sum_probs=81.2
Q ss_pred HHhHHHHHH--HHHHHHHhhcchhhhHhHHHHHHHhhhhhhHHHHHHHHHHhhHHHHHHHHHhHHhhhhhcccccccccc
Q 021279 121 QLSASLAAR--KSLEVLCSSLGKEKEIMAGELARKVHELNEMEELINDFKAQNASLLAKVQNCAAEHKEKKCSAGEIQGN 198 (315)
Q Consensus 121 eL~ASlaAr--kSLe~mCSSLGKEKeIMA~ElaRKv~ELnemEeli~DlkAQN~~Ll~K~q~~a~e~k~~~~s~~e~~gN 198 (315)
+=..-|||| |||---=+.|-..-+-| -.+|+..-+.|..|+-+-.+--+-+|-..-.. -.+..+..++
T Consensus 75 erDLelaA~iGqsLl~~N~~L~~~~~~l-------e~~L~~~~e~v~qLrHeL~~kdeLL~~ys~~~---ee~~~~~~~~ 144 (306)
T PF04849_consen 75 ERDLELAARIGQSLLEQNQDLSERNEAL-------EEQLGAALEQVEQLRHELSMKDELLQIYSNDD---EESEPESSES 144 (306)
T ss_pred hhhHHHHHHHhHHHHHhcccHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHh---hhcccccCCC
Confidence 334556776 44444334443322223 23344445555555544433333333322111 0223455566
Q ss_pred hhhHHhhHHHHHHHHhhhhhhHHHHHHhHHHHHHhHHHHHHHHHHH------------------HHHHHHHHHHHHHHHh
Q 021279 199 AALQERNKALSEHLLKSLDGYRSLKKKYKYVKEENTAMRATMEELG------------------KKVEAGIDQILGFRQR 260 (315)
Q Consensus 199 ~aLq~RNkaLSeqLlKSiDgyRSlKrkyk~~qeEN~~i~~tme~~~------------------~~V~aG~~~i~~fr~R 260 (315)
.++..+-..++.+ ...-+-.|.+|+|...+||..+|.--..+. ......=.+|..+-+=
T Consensus 145 ~~~~~~~~~~~~~---~~~~le~Lq~Klk~LEeEN~~LR~Ea~~L~~et~~~EekEqqLv~dcv~QL~~An~qia~LseE 221 (306)
T PF04849_consen 145 TPLRRNESSLSSQ---KCIQLEALQEKLKSLEEENEQLRSEASQLKTETDTYEEKEQQLVLDCVKQLSEANQQIASLSEE 221 (306)
T ss_pred ccccccccccccc---cchhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhcchhHHHHHHH
Confidence 6664333333322 223456899999999999999986443333 4444555677788888
Q ss_pred hhhhccccccHHHHHHHHHh
Q 021279 261 IATKEEQEVDIEEEITALEG 280 (315)
Q Consensus 261 ~~~~~eq~~dIeeEisaLe~ 280 (315)
+++..|.-..-.+||+.|=.
T Consensus 222 La~k~Ee~~rQQEEIt~Lls 241 (306)
T PF04849_consen 222 LARKTEENRRQQEEITSLLS 241 (306)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 88888887888888887743
No 59
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=59.53 E-value=1.2e+02 Score=26.22 Aligned_cols=85 Identities=14% Similarity=0.204 Sum_probs=49.8
Q ss_pred hhhHHHHHHHHHHhhHHHHHHHHHhHHhhhhhccccccc--ccchhhHHhhHHHHHHHHhhhhhhHHHHHHhHHHHHHhH
Q 021279 157 LNEMEELINDFKAQNASLLAKVQNCAAEHKEKKCSAGEI--QGNAALQERNKALSEHLLKSLDGYRSLKKKYKYVKEENT 234 (315)
Q Consensus 157 LnemEeli~DlkAQN~~Ll~K~q~~a~e~k~~~~s~~e~--~gN~aLq~RNkaLSeqLlKSiDgyRSlKrkyk~~qeEN~ 234 (315)
|.+...-+.+++++|+.|..++.............+... .--..+++|+..|.+.+..--......++++...++.+.
T Consensus 22 L~~~~~~l~~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~r~~~l~~~i~~~~~~i~~~r~~l~~~~~~l~ 101 (302)
T PF10186_consen 22 LLELRSELQQLKEENEELRRRIEEILESDSNGQLLEIQQLKREIEELRERLERLRERIERLRKRIEQKRERLEELRESLE 101 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666677788888888888888877665111000000000 112345666666666666655666666666666666666
Q ss_pred HHHHHHH
Q 021279 235 AMRATME 241 (315)
Q Consensus 235 ~i~~tme 241 (315)
..+.+|.
T Consensus 102 ~~~~~l~ 108 (302)
T PF10186_consen 102 QRRSRLS 108 (302)
T ss_pred HHHHHHH
Confidence 6666655
No 60
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=59.25 E-value=1.2e+02 Score=30.37 Aligned_cols=88 Identities=17% Similarity=0.333 Sum_probs=52.8
Q ss_pred ccchhhHHhhHHHHHHHHhhhhhhHHHHHHhHHHH-------HHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccc
Q 021279 196 QGNAALQERNKALSEHLLKSLDGYRSLKKKYKYVK-------EENTAMRATMEELGKKVEAGIDQILGFRQRIATKEEQE 268 (315)
Q Consensus 196 ~gN~aLq~RNkaLSeqLlKSiDgyRSlKrkyk~~q-------eEN~~i~~tme~~~~~V~aG~~~i~~fr~R~~~~~eq~ 268 (315)
..|..++++-..|-+.|-+-++.+......+..+. +.|..+...++.+...-..-=+-+..+
T Consensus 278 ~~~~~i~~~Id~lYd~le~E~~Ak~~V~~~~~~l~~~l~~~~~~~~~l~~e~~~v~~sY~L~~~e~~~~----------- 346 (560)
T PF06160_consen 278 EENEEIEERIDQLYDILEKEVEAKKYVEKNLKELYEYLEHAKEQNKELKEELERVSQSYTLNHNELEIV----------- 346 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHH-----------
Confidence 56778888888888888888888776665555443 333333333333322211111112222
Q ss_pred ccHHHHHHHHHhhhhhhcchhhhhcc
Q 021279 269 VDIEEEITALEGMFDSFNMKIKKHIQ 294 (315)
Q Consensus 269 ~dIeeEisaLe~mfe~~~mKi~kh~q 294 (315)
-.++++|+.|++.|+.+.-.+..+..
T Consensus 347 ~~l~~~l~~l~~~~~~~~~~i~~~~~ 372 (560)
T PF06160_consen 347 RELEKQLKELEKRYEDLEERIEEQQV 372 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCc
Confidence 24778888888888888777766644
No 61
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=59.13 E-value=3.8e+02 Score=32.05 Aligned_cols=70 Identities=27% Similarity=0.366 Sum_probs=47.1
Q ss_pred CCchHHHHHHHHHhHHHHHHHHHHHHHhhcchhhhHhHHHHHHHhhhhhhHHHHHHHHHHhhHHHHHHHH
Q 021279 110 PITDDKEKLRRQLSASLAARKSLEVLCSSLGKEKEIMAGELARKVHELNEMEELINDFKAQNASLLAKVQ 179 (315)
Q Consensus 110 ~~~dekeklkkeL~ASlaArkSLe~mCSSLGKEKeIMA~ElaRKv~ELnemEeli~DlkAQN~~Ll~K~q 179 (315)
...++..+++.+|-.+=..++-|+.+-..+-.|+...+.+|.---.-+-+.|++..-+++....|=..++
T Consensus 842 ~~~~e~~~l~~~l~~~e~~~~ele~~~~~~~~e~~~l~~~l~~e~~~~~~aee~~~~~~~~k~~le~~l~ 911 (1930)
T KOG0161|consen 842 AKEEEIQKLKEELQKSESKRKELEEKLVKLLEEKNDLQEQLQAEKENLAEAEELLERLRAEKQELEKELK 911 (1930)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3457788889999888888888888777777777777776654444444555555555555554444443
No 62
>PF09766 FimP: Fms-interacting protein; InterPro: IPR019163 This entry represents Thoc5 which is one of the subunits of the THO complex, which additionally contains: HPR1, Thoc2, Thoc6 and Thoc7. The evolutionarily conserved multisubunit THO complex, which is recruited to actively transcribed genes is required for the efficient expression of genes that have internal tandem repeats. It is suggested that the THO complex functions to rectify aberrant structures that arise during transcription [, ] and is required for cell proliferation and for proper export of heat-shock mRNAs under heat stress []. This entry also identifies the crucial 144 N-terminal residues of the FmiP protein, which is essential for the binding of the protein to the cytoplasmic domain of activated Fms-molecules in M-CSF induced haematopoietic differentiation of macrophages. The C terminus contains a putative nuclear localisation sequence and a leucine zipper which suggest further, as yet unknown, nuclear functions. The level of FMIP expression might form a threshold that determines whether cells differentiate into macrophages or into granulocytes [].
Probab=58.43 E-value=79 Score=30.20 Aligned_cols=104 Identities=18% Similarity=0.265 Sum_probs=74.3
Q ss_pred hHhHHHHhhhccchhhhchHHHhhhhcCCCCC--------------CCCCCcC-CCCCCchHHHHHHHHHhHHHHHHHHH
Q 021279 68 LDDVKTRIQKSQPVAKRSVAELRRCNTDLRPN--------------RAPRDKK-LCEPITDDKEKLRRQLSASLAARKSL 132 (315)
Q Consensus 68 LDdvk~RIqK~Qs~~krr~aeLRRCnTdLrp~--------------~~P~DkK-p~e~~~dekeklkkeL~ASlaArkSL 132 (315)
+|...-.+|-..--..--..|+++|.- .+-. .+|.+-+ |.....|+-+.+-..|+--|.-||.|
T Consensus 28 vD~~~LqLqNl~YE~~hL~kEI~~C~~-F~s~~~~i~Lv~~eEF~~~ap~~~~~~~~~~~~~H~lml~RL~~EL~~Rk~L 106 (355)
T PF09766_consen 28 VDALHLQLQNLLYEKSHLQKEIKKCLD-FKSKYEDIELVPVEEFYAKAPEEISDPELTEDDEHQLMLARLEFELEQRKRL 106 (355)
T ss_pred hhHHHHHHhHHHHHHHHHHHHHHHHhc-cCCCCCCCcCccHHHHHHhChhhccccccCCCChHHHHHHHHHHHHHHHHHH
Confidence 344444444443333233358888852 2211 4555543 55556888898999999999999999
Q ss_pred HHHHhhcchhhhHhHHHHHHHhhhhhhHHHHHHHHHHhhH
Q 021279 133 EVLCSSLGKEKEIMAGELARKVHELNEMEELINDFKAQNA 172 (315)
Q Consensus 133 e~mCSSLGKEKeIMA~ElaRKv~ELnemEeli~DlkAQN~ 172 (315)
..-|..|-++|+-+..+++.|-..|+....-+.+|+.--.
T Consensus 107 ~~~~~el~~~k~~l~~~~~~k~~~L~~l~~~L~~l~~a~~ 146 (355)
T PF09766_consen 107 EEQLKELEQRKKKLQQENKKKKKFLDSLPPQLKSLKKAAK 146 (355)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 9999999999999999999999888888877777665433
No 63
>PF04048 Sec8_exocyst: Sec8 exocyst complex component specific domain; InterPro: IPR007191 Sec8 is a component of the exocyst complex involved in the docking of exocystic vesicles with a fusion site on the plasma membrane. The exocyst complex is composed of Sec3, Sec5, Sec6, Sec8, Sec10, Sec15, Exo70 and Exo84.; GO: 0006904 vesicle docking involved in exocytosis, 0015031 protein transport, 0000145 exocyst
Probab=57.79 E-value=1.1e+02 Score=25.41 Aligned_cols=94 Identities=15% Similarity=0.254 Sum_probs=70.1
Q ss_pred HHHHHhhHHHHHHHHHhHHhhhhhcccccccccchhhHHhhHHHHHHHHhhhhhhHHHHHHhHHHHHHhHHHHHHHHHHH
Q 021279 165 NDFKAQNASLLAKVQNCAAEHKEKKCSAGEIQGNAALQERNKALSEHLLKSLDGYRSLKKKYKYVKEENTAMRATMEELG 244 (315)
Q Consensus 165 ~DlkAQN~~Ll~K~q~~a~e~k~~~~s~~e~~gN~aLq~RNkaLSeqLlKSiDgyRSlKrkyk~~qeEN~~i~~tme~~~ 244 (315)
.+|...-+.+=+.|+..+.+|- +.+-+||..|-.+-..+.+.|+.=..++..|.+-.
T Consensus 43 ~~f~~~~~~~~~~L~~vV~eh~-----------------------q~Fn~sI~sy~~i~~~i~~sq~~i~~lK~~L~~ak 99 (142)
T PF04048_consen 43 QEFEELKKRIEKALQEVVNEHY-----------------------QGFNSSIGSYSQILSSISESQERIRELKESLQEAK 99 (142)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444555566777777666 34667899999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhhhhccccccHHHHHHHHHhhh
Q 021279 245 KKVEAGIDQILGFRQRIATKEEQEVDIEEEITALEGMF 282 (315)
Q Consensus 245 ~~V~aG~~~i~~fr~R~~~~~eq~~dIeeEisaLe~mf 282 (315)
..+...-+.++.+..|-+.-++. ++|=..|..|-.+-
T Consensus 100 ~~L~~~~~eL~~L~~~s~~~~~m-i~iL~~Ie~l~~vP 136 (142)
T PF04048_consen 100 SLLGCRREELKELWQRSQEYKEM-IEILDQIEELRQVP 136 (142)
T ss_pred HHHhcCCHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhH
Confidence 99999888999999988776633 44445555554443
No 64
>PRK11637 AmiB activator; Provisional
Probab=57.68 E-value=1.8e+02 Score=27.78 Aligned_cols=28 Identities=11% Similarity=0.127 Sum_probs=17.1
Q ss_pred HHHHHHHhhhhhhHHHHHHhHHHHHHhH
Q 021279 207 ALSEHLLKSLDGYRSLKKKYKYVKEENT 234 (315)
Q Consensus 207 aLSeqLlKSiDgyRSlKrkyk~~qeEN~ 234 (315)
.++..-.+-|+.|...++.+...+.+=.
T Consensus 163 ~i~~~d~~~l~~l~~~~~~L~~~k~~le 190 (428)
T PRK11637 163 YLNQARQETIAELKQTREELAAQKAELE 190 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3555555667777777776665555433
No 65
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=57.01 E-value=3.5 Score=41.74 Aligned_cols=86 Identities=20% Similarity=0.258 Sum_probs=0.0
Q ss_pred ccchhhHHhhHHHHHHHHhhhhhhHHHHHHhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccccccHHHHH
Q 021279 196 QGNAALQERNKALSEHLLKSLDGYRSLKKKYKYVKEENTAMRATMEELGKKVEAGIDQILGFRQRIATKEEQEVDIEEEI 275 (315)
Q Consensus 196 ~gN~aLq~RNkaLSeqLlKSiDgyRSlKrkyk~~qeEN~~i~~tme~~~~~V~aG~~~i~~fr~R~~~~~eq~~dIeeEi 275 (315)
+.|..|.+++-.|-++|. +|+.++..+...+.++..+..-+.+....+.-=.-.+..+++++..-...--.+..|+
T Consensus 339 e~N~~l~e~~~~LEeel~----~~~~~~~qle~~k~qi~eLe~~l~~~~~~~~~l~~e~~~L~ek~~~l~~eke~l~~e~ 414 (713)
T PF05622_consen 339 EDNAVLLETKAMLEEELK----KARALKSQLEEYKKQIQELEQKLSEESRRADKLEFENKQLEEKLEALEEEKERLQEER 414 (713)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHH----HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666666667777764 4667777777777777777766666555444333334445554443222111244555
Q ss_pred HHHHhhhhhh
Q 021279 276 TALEGMFDSF 285 (315)
Q Consensus 276 saLe~mfe~~ 285 (315)
..|....+.+
T Consensus 415 ~~L~e~~eeL 424 (713)
T PF05622_consen 415 DSLRETNEEL 424 (713)
T ss_dssp ----------
T ss_pred HHHHHHHHHh
Confidence 5555555444
No 66
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=56.12 E-value=1.7e+02 Score=27.06 Aligned_cols=81 Identities=26% Similarity=0.361 Sum_probs=50.5
Q ss_pred HHHHHHHh-hhhhhHHHHHHHHHHhhHHHHHHHHHhHHhhhhhcccccccccchhhHHhhHHHHHHHHhhhhhhHHHHHH
Q 021279 147 AGELARKV-HELNEMEELINDFKAQNASLLAKVQNCAAEHKEKKCSAGEIQGNAALQERNKALSEHLLKSLDGYRSLKKK 225 (315)
Q Consensus 147 A~ElaRKv-~ELnemEeli~DlkAQN~~Ll~K~q~~a~e~k~~~~s~~e~~gN~aLq~RNkaLSeqLlKSiDgyRSlKrk 225 (315)
|.+.|.-+ .||-.|-.++.-|-.+|..|++--..--.|+.. =+-+=..||+-|..|. -+.--|+++
T Consensus 58 al~~aK~l~eEledLk~~~~~lEE~~~~L~aq~rqlEkE~q~------L~~~i~~Lqeen~kl~-------~e~~~lk~~ 124 (193)
T PF14662_consen 58 ALQKAKALEEELEDLKTLAKSLEEENRSLLAQARQLEKEQQS------LVAEIETLQEENGKLL-------AERDGLKKR 124 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHhHHH-------HhhhhHHHH
Confidence 44444443 467777788888888998888754433332221 1111234666665443 344458999
Q ss_pred hHHHHHHhHHHHHHH
Q 021279 226 YKYVKEENTAMRATM 240 (315)
Q Consensus 226 yk~~qeEN~~i~~tm 240 (315)
+++...+|..++.-+
T Consensus 125 ~~eL~~~~~~Lq~Ql 139 (193)
T PF14662_consen 125 SKELATEKATLQRQL 139 (193)
T ss_pred HHHHHHhhHHHHHHH
Confidence 999999998888766
No 67
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=55.85 E-value=2.2e+02 Score=28.31 Aligned_cols=106 Identities=17% Similarity=0.185 Sum_probs=47.2
Q ss_pred hHHHHHHHHHhHHHHHHHHHHHHHhhcchhh---h-HhHHHHHHHhhhhhhH-HHHHHHHHHhhHHHHHHHHHhHHhhhh
Q 021279 113 DDKEKLRRQLSASLAARKSLEVLCSSLGKEK---E-IMAGELARKVHELNEM-EELINDFKAQNASLLAKVQNCAAEHKE 187 (315)
Q Consensus 113 dekeklkkeL~ASlaArkSLe~mCSSLGKEK---e-IMA~ElaRKv~ELnem-Eeli~DlkAQN~~Ll~K~q~~a~e~k~ 187 (315)
++.+.-.+.|+.+-.-+.++.-..+-|..+. + -....|+.-.+.|..+ -.-+.++..+-+..+.-|+..+.+-..
T Consensus 212 e~L~~e~~~L~n~e~i~~~~~~~~~~L~~~~~~~~~~~~~~l~~~~~~l~~~~d~~~~~~~~~l~~~~~~l~d~~~~l~~ 291 (563)
T TIGR00634 212 EALEAEQQRLSNLEKLRELSQNALAALRGDVDVQEGSLLEGLGEAQLALASVIDGSLRELAEQVGNALTEVEEATRELQN 291 (563)
T ss_pred HHHHHHHHHHhCHHHHHHHHHHHHHHHhCCccccccCHHHHHHHHHHHHHHhhhHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555555555555453221 1 1245556555665553 112233333334444444444442221
Q ss_pred hcccccccccchhhHHhhHHHHHHHHhhhhhhHHHHHHhHH
Q 021279 188 KKCSAGEIQGNAALQERNKALSEHLLKSLDGYRSLKKKYKY 228 (315)
Q Consensus 188 ~~~s~~e~~gN~aLq~RNkaLSeqLlKSiDgyRSlKrkyk~ 228 (315)
..+..+.+-. -=+.+...|+.++.|+|||..
T Consensus 292 -~~~~l~~dp~---------~L~ele~RL~~l~~LkrKyg~ 322 (563)
T TIGR00634 292 -YLDELEFDPE---------RLNEIEERLAQIKRLKRKYGA 322 (563)
T ss_pred -HHHhCCCCHH---------HHHHHHHHHHHHHHHHHHhCC
Confidence 1112222111 012355556677788888874
No 68
>PF04899 MbeD_MobD: MbeD/MobD like ; InterPro: IPR006983 The MbeD and MobD proteins are plasmid encoded, and are involved in the plasmid mobilisation and transfer in the presence of conjugative plasmids [].
Probab=55.48 E-value=38 Score=26.38 Aligned_cols=51 Identities=29% Similarity=0.369 Sum_probs=37.8
Q ss_pred hhhhhhHHHHHHHHHHhhHHHH---HHHHHhHHhhhhhcccccccccchhhHHhhHHHHHHHH
Q 021279 154 VHELNEMEELINDFKAQNASLL---AKVQNCAAEHKEKKCSAGEIQGNAALQERNKALSEHLL 213 (315)
Q Consensus 154 v~ELnemEeli~DlkAQN~~Ll---~K~q~~a~e~k~~~~s~~e~~gN~aLq~RNkaLSeqLl 213 (315)
.|=||.||+|=.|+-.|-...= +-+|....... +.|++|.+++..||.|+.
T Consensus 6 ~qLl~ale~Lq~~y~~q~~~Wq~sy~~Lq~~~~~t~---------~~~a~L~~qv~~Ls~qv~ 59 (70)
T PF04899_consen 6 KQLLSALEELQQSYEKQQQEWQSSYADLQHMFEQTS---------QENAALSEQVNNLSQQVQ 59 (70)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH---------HHHHHHHHHHHHHHHHHH
Confidence 4668999999999988876553 33444444333 678899999999999874
No 69
>PRK13922 rod shape-determining protein MreC; Provisional
Probab=55.10 E-value=76 Score=28.26 Aligned_cols=41 Identities=24% Similarity=0.351 Sum_probs=24.8
Q ss_pred cchhhHHhhHHHHHHHHhhhhhhHHHHHHhHHHHHHhHHHHHHHH
Q 021279 197 GNAALQERNKALSEHLLKSLDGYRSLKKKYKYVKEENTAMRATME 241 (315)
Q Consensus 197 gN~aLq~RNkaLSeqLlKSiDgyRSlKrkyk~~qeEN~~i~~tme 241 (315)
....|++.|+.|-+++. .++.....|..+++||..++..|.
T Consensus 70 ~~~~l~~en~~L~~e~~----~l~~~~~~~~~l~~en~~L~~lL~ 110 (276)
T PRK13922 70 SLFDLREENEELKKELL----ELESRLQELEQLEAENARLRELLN 110 (276)
T ss_pred HHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34456666666555443 355556666677777777776554
No 70
>PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional
Probab=54.58 E-value=45 Score=36.65 Aligned_cols=44 Identities=18% Similarity=0.240 Sum_probs=28.2
Q ss_pred hhcchhhhHhHHHHHHHhhhhhhHHHHHHHHHHhhHHHHHHHHH
Q 021279 137 SSLGKEKEIMAGELARKVHELNEMEELINDFKAQNASLLAKVQN 180 (315)
Q Consensus 137 SSLGKEKeIMA~ElaRKv~ELnemEeli~DlkAQN~~Ll~K~q~ 180 (315)
+.++.|++.....+..+..++...|++...+.++++.|-+++..
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (1123)
T PRK11448 159 ELQAREKAQSQALAEAQQQELVALEGLAAELEEKQQELEAQLEQ 202 (1123)
T ss_pred HHhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555666666666666667776667777777777766666553
No 71
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=54.48 E-value=3.3e+02 Score=30.00 Aligned_cols=36 Identities=6% Similarity=0.097 Sum_probs=18.2
Q ss_pred hhhhhHHHHHHhHHHHHHhHHHHHHHHHHHHHHHHH
Q 021279 215 SLDGYRSLKKKYKYVKEENTAMRATMEELGKKVEAG 250 (315)
Q Consensus 215 SiDgyRSlKrkyk~~qeEN~~i~~tme~~~~~V~aG 250 (315)
++.-...|+..+.+..+++..++..+.++..++...
T Consensus 879 ~l~~r~~le~~L~el~~el~~l~~~~~~~~~~~~~~ 914 (1311)
T TIGR00606 879 NLQRRQQFEEQLVELSTEVQSLIREIKDAKEQDSPL 914 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 444445555555555555555555555554444433
No 72
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=54.43 E-value=1.5e+02 Score=27.59 Aligned_cols=70 Identities=19% Similarity=0.223 Sum_probs=57.7
Q ss_pred cccccchhhHHhhHHHHHHHHhhhhhhHHHHHHhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 021279 193 GEIQGNAALQERNKALSEHLLKSLDGYRSLKKKYKYVKEENTAMRATMEELGKKVEAGIDQILGFRQRIATK 264 (315)
Q Consensus 193 ~e~~gN~aLq~RNkaLSeqLlKSiDgyRSlKrkyk~~qeEN~~i~~tme~~~~~V~aG~~~i~~fr~R~~~~ 264 (315)
.+..+| |.+-|..+.+.+-|-.+--++...+|+-+++.+.+++...+++--|.+--++-=.++++++-.+
T Consensus 143 ~~~~~~--~~~~~~~~~~~~~kL~~el~~~~~~Le~~~~~~~al~Kq~e~~~~EydrLlee~~~Lq~~i~~~ 212 (216)
T KOG1962|consen 143 LENSSK--LEEENDKLKADLEKLETELEKKQKKLEKAQKKVDALKKQSEGLQDEYDRLLEEYSKLQEQIESG 212 (216)
T ss_pred hhcccc--hhhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhcc
Confidence 344444 8889999999999999999999999999999999999999998888776666666777766544
No 73
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=53.85 E-value=3.4e+02 Score=29.84 Aligned_cols=98 Identities=22% Similarity=0.283 Sum_probs=49.2
Q ss_pred HHHhhhhcCCCCCCCCCC-----------cCCCCCC--chHHHHHHHHHhHHHHHHHHHHHHHhhcch-------hhhHh
Q 021279 87 AELRRCNTDLRPNRAPRD-----------KKLCEPI--TDDKEKLRRQLSASLAARKSLEVLCSSLGK-------EKEIM 146 (315)
Q Consensus 87 aeLRRCnTdLrp~~~P~D-----------kKp~e~~--~dekeklkkeL~ASlaArkSLe~mCSSLGK-------EKeIM 146 (315)
+|| =+.|||-|.-++.+ -..-+.+ ..+.+.|+.++..--.+..+++..++.+.+ +-+--
T Consensus 562 ~eL-L~r~dL~P~l~~~~~~dslyGl~LdL~~I~~pd~~~~ee~L~~~l~~~~~~l~~~~~~~~~~e~~l~~~~~~~~~~ 640 (1201)
T PF12128_consen 562 EEL-LYRTDLEPQLVEDSGSDSLYGLSLDLSAIDVPDYAASEEELRERLEQAEDQLQSAEERQEELEKQLKQINKKIEEL 640 (1201)
T ss_pred HHH-hcCCCCCCeecCCCcccccceeEeehhhcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444 56799999865432 1111121 345667777766655555556555555422 22222
Q ss_pred HHHHHHHhhhhhhHHHHHHHHHHhhHHHHHHHHHhHHhh
Q 021279 147 AGELARKVHELNEMEELINDFKAQNASLLAKVQNCAAEH 185 (315)
Q Consensus 147 A~ElaRKv~ELnemEeli~DlkAQN~~Ll~K~q~~a~e~ 185 (315)
-.+++..-+++...+.-+..++.+...+-.+......+.
T Consensus 641 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 679 (1201)
T PF12128_consen 641 KREITQAEQELKQAEQDLQRLKNEREQLKQEIEEAKEER 679 (1201)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444455555555544444444433
No 74
>PF03915 AIP3: Actin interacting protein 3; InterPro: IPR022782 This entry represents a domain found in yeast actin interacting protein 3 and bud site selection protein 6. In these proteins it is typically found towards the C terminus. It is also found in metazoan proteins, such as the mouse enhancer trap locus 4 protein. ; PDB: 3ONX_B 3OKQ_A.
Probab=53.11 E-value=68 Score=32.07 Aligned_cols=78 Identities=24% Similarity=0.366 Sum_probs=51.8
Q ss_pred chHHHHHHHHHhHHHHHHHHHHHHHhhcchhhh----HhHHHHHHHhh---hhhhHHHHHHHHHHhhHHH---HHHHHHh
Q 021279 112 TDDKEKLRRQLSASLAARKSLEVLCSSLGKEKE----IMAGELARKVH---ELNEMEELINDFKAQNASL---LAKVQNC 181 (315)
Q Consensus 112 ~dekeklkkeL~ASlaArkSLe~mCSSLGKEKe----IMA~ElaRKv~---ELnemEeli~DlkAQN~~L---l~K~q~~ 181 (315)
+...+-+.++++ .|.+.|.-|++.+..||. |+..||-.-++ .|+..|+|+.||+.....+ +.-|..|
T Consensus 245 ~~qle~v~kdi~---~a~~~L~~m~~~i~~~kp~WkKiWE~EL~~V~eEQqfL~~QedL~~DL~eDl~k~~etf~lveq~ 321 (424)
T PF03915_consen 245 PKQLETVAKDIS---RASKELKKMKEYIKTEKPIWKKIWESELQKVCEEQQFLKLQEDLLSDLKEDLKKASETFALVEQC 321 (424)
T ss_dssp HHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH---HHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445666666666 478899999999999976 45677765554 5999999999999877655 4456677
Q ss_pred HHhhhhhcccc
Q 021279 182 AAEHKEKKCSA 192 (315)
Q Consensus 182 a~e~k~~~~s~ 192 (315)
+.+|.+....+
T Consensus 322 ~~~Q~k~~~~~ 332 (424)
T PF03915_consen 322 TEEQEKSPSRS 332 (424)
T ss_dssp CT---------
T ss_pred HHHHcccCCCC
Confidence 77776544333
No 75
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=52.06 E-value=1.7e+02 Score=25.96 Aligned_cols=44 Identities=16% Similarity=0.229 Sum_probs=21.1
Q ss_pred hHHhhHHHHHHHHhhhhhhHHHHHHhHHHHHHhHHHHHHHHHHH
Q 021279 201 LQERNKALSEHLLKSLDGYRSLKKKYKYVKEENTAMRATMEELG 244 (315)
Q Consensus 201 Lq~RNkaLSeqLlKSiDgyRSlKrkyk~~qeEN~~i~~tme~~~ 244 (315)
.|.|--.+.++-..-.+-||.|++.....+..|..+...+....
T Consensus 40 sQ~~id~~~~e~~~L~~e~~~l~~e~e~L~~~~~~l~~~v~~q~ 83 (251)
T PF11932_consen 40 SQKRIDQWDDEKQELLAEYRQLEREIENLEVYNEQLERQVASQE 83 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444445555555555555555554444444333
No 76
>PF05837 CENP-H: Centromere protein H (CENP-H); InterPro: IPR008426 Chromosome segregation in eukaryotes requires the kinetochore, a multi-protein structure that assembles on centromeric DNA, and which acts to link chromosomes to spindle microtubules. Kinetochore structure and composition is highly conserved among vertebrates. The inner kinetochore is essential for kinetochore assembly, and is involved in chromosome segregation via regulation of the spindle. Inner kinetochore components include the multi-subunit CENP-H/I complex, which may function, in part, in directing centromere protein A (CENP-A) deposition to centromeres, where CENP-A is a centromere-specific histone H3 variant required for the organisation of centromeric chromatin during interphase. The CENP-H/I complex contains three functional classes of proteins [, ]: CENP-H class (includes CENP-H, -I, -K, -L) CENP-M class (includes CENP-M) CENP-O class (includes CENP-O, -P, -Q, -R, -50) CENP-H is required for the localisation of CENP-C, but not CENP-A, to the centromere. However, it may be involved in the incorporation of newly synthesised CENP-A into centromeres via its interaction with the CENP-A/CENP-HI complex. CENP-H contains a coiled-coil structure and a nuclear localisation signal. CENP-H is specifically and constitutively localised in kinetochores throughout the cell cycle, and may play a role in kinetochore organisation and function throughout the cell cycle []. Studies show that CENP-H may be associated with certain human cancers [, ]. This entry also includes Kinetochore protein Fta3 which is a subunit of the Sim4 complex. This complex is required for loading the DASH complex onto the kinetochore via interaction with dad1. Fta2, Fta3 and Fta4 associate with the central core and inner repeat region of the centromere [].; GO: 0043515 kinetochore binding, 0007059 chromosome segregation, 0051301 cell division, 0000777 condensed chromosome kinetochore, 0005634 nucleus
Probab=51.70 E-value=1.3e+02 Score=24.28 Aligned_cols=38 Identities=21% Similarity=0.330 Sum_probs=23.5
Q ss_pred HHHHhhhhhhHHHHHHH-------HHHhhHHHHHHHHHhHHhhhh
Q 021279 150 LARKVHELNEMEELIND-------FKAQNASLLAKVQNCAAEHKE 187 (315)
Q Consensus 150 laRKv~ELnemEeli~D-------lkAQN~~Ll~K~q~~a~e~k~ 187 (315)
+++-.++.+.+++-+.+ ++.+|..|+..++..+.+.+.
T Consensus 5 ~~~~~~~~~~l~~~L~~v~~~~l~l~~~n~el~~el~~l~~~~~~ 49 (106)
T PF05837_consen 5 ILNLQQESRSLQEKLSDVEKKRLRLKRRNQELAQELLELAEKQKS 49 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 34444555555555544 566777788888877776664
No 77
>smart00338 BRLZ basic region leucin zipper.
Probab=51.55 E-value=37 Score=24.44 Aligned_cols=33 Identities=27% Similarity=0.461 Sum_probs=26.3
Q ss_pred HHhhhhhhHHHHHHHHHHhhHHHHHHHHHhHHh
Q 021279 152 RKVHELNEMEELINDFKAQNASLLAKVQNCAAE 184 (315)
Q Consensus 152 RKv~ELnemEeli~DlkAQN~~Ll~K~q~~a~e 184 (315)
||-..+.++|.=|.+|.++|..|..+|...-.+
T Consensus 23 rKk~~~~~Le~~~~~L~~en~~L~~~~~~l~~e 55 (65)
T smart00338 23 RKKAEIEELERKVEQLEAENERLKKEIERLRRE 55 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566777888888999999999998888776553
No 78
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=50.51 E-value=42 Score=24.19 Aligned_cols=33 Identities=21% Similarity=0.415 Sum_probs=27.1
Q ss_pred HHHhhhhhhHHHHHHHHHHhhHHHHHHHHHhHH
Q 021279 151 ARKVHELNEMEELINDFKAQNASLLAKVQNCAA 183 (315)
Q Consensus 151 aRKv~ELnemEeli~DlkAQN~~Ll~K~q~~a~ 183 (315)
.||...+.++|+-|..|...|..|...+.....
T Consensus 22 ~RKk~~~~~Le~~~~~L~~en~~L~~~~~~L~~ 54 (64)
T PF00170_consen 22 QRKKQYIEELEEKVEELESENEELKKELEQLKK 54 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 478888999999999999999999877765544
No 79
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=50.07 E-value=2.8e+02 Score=32.46 Aligned_cols=59 Identities=15% Similarity=0.210 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHhhcchhhhHhHHHHHHHhhhhhhHHHHHHHHHHhhHHHHHHHHHhHHhh
Q 021279 126 LAARKSLEVLCSSLGKEKEIMAGELARKVHELNEMEELINDFKAQNASLLAKVQNCAAEH 185 (315)
Q Consensus 126 laArkSLe~mCSSLGKEKeIMA~ElaRKv~ELnemEeli~DlkAQN~~Ll~K~q~~a~e~ 185 (315)
++|.+-|.+--++--.+-+-.+.+|.+.|.-|+..+.+++.-+.-. .--+.||+.|.+-
T Consensus 1496 ~vA~~vL~l~lp~tpeqi~~L~~~I~e~v~sL~nVd~IL~~T~~di-~ra~~L~s~A~~a 1554 (1758)
T KOG0994|consen 1496 EVAEEVLALELPLTPEQIQQLTGEIQERVASLPNVDAILSRTKGDI-ARAENLQSEAERA 1554 (1758)
T ss_pred HHHHHHHhccCCCCHHHHHHHHHHHHHHHHhcccHHHHHHhhhhhH-HHHHHHHHHHHHH
Confidence 3456666666666666677788888888888888888887665432 2334455555433
No 80
>PF13643 DUF4145: Domain of unknown function (DUF4145)
Probab=49.58 E-value=77 Score=22.99 Aligned_cols=51 Identities=22% Similarity=0.358 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHHHhhcchhhhHhHHHHHHHhhhhhhHHHHHHHHHHhh--HHHHHHHHHhHHhhhh
Q 021279 124 ASLAARKSLEVLCSSLGKEKEIMAGELARKVHELNEMEELINDFKAQN--ASLLAKVQNCAAEHKE 187 (315)
Q Consensus 124 ASlaArkSLe~mCSSLGKEKeIMA~ElaRKv~ELnemEeli~DlkAQN--~~Ll~K~q~~a~e~k~ 187 (315)
|-+.+|..||.+|-.+|-.+.. .+.+.|.+|..+. ..+...++..-.-+|.
T Consensus 14 a~~~~R~~lE~~~~~~~~~~~~-------------~L~~~I~~l~~~~~~~~~~~~~~~iR~~GN~ 66 (87)
T PF13643_consen 14 AAVMARRALEFIVKELGIKKGK-------------NLNEKINKLRKKGLPPDIRDWLHAIRKIGND 66 (87)
T ss_pred HHHHHHHHHHHHHHHHhhccCC-------------CHHHHHHHHHHcCCCHHHHHHHHHHHHHHHH
Confidence 5567899999999999922111 3667777777776 6666666655444443
No 81
>PF02785 Biotin_carb_C: Biotin carboxylase C-terminal domain; InterPro: IPR005482 Acetyl-CoA carboxylase is found in all animals, plants, and bacteria and catalyzes the first committed step in fatty acid synthesis. It is a multicomponent enzyme containing a biotin carboxylase activity, a biotin carboxyl carrier protein, and a carboxyltransferase functionality. The "B-domain" extends from the main body of the subunit where it folds into two alpha-helical regions and three strands of beta-sheet. Following the excursion into the B-domain, the polypeptide chain folds back into the body of the protein where it forms an eight-stranded antiparallel beta-sheet. In addition to this major secondary structural element, the C-terminal domain also contains a smaller three-stranded antiparallel beta-sheet and seven alpha-helices []. ; GO: 0016874 ligase activity; PDB: 1W96_B 1W93_A 3VA7_A 2GPW_A 2W70_A 3G8D_A 1DV2_A 2VR1_B 2J9G_B 1DV1_A ....
Probab=49.19 E-value=5 Score=32.58 Aligned_cols=22 Identities=23% Similarity=0.463 Sum_probs=19.5
Q ss_pred CccchhhhhhhHHHHHHHHhhh
Q 021279 24 EDLSFEGIAANVKLLLKLIQDH 45 (315)
Q Consensus 24 ed~slEGiatNvKLLLKLiQdH 45 (315)
.++.++||.||+-+|..|+.+-
T Consensus 73 ~e~~I~Gv~TNi~fl~~ll~~~ 94 (107)
T PF02785_consen 73 AETVIEGVKTNIPFLRALLAHP 94 (107)
T ss_dssp HHHEEESSSHSHHHHHHHHTSH
T ss_pred ceEEEECccCCHHHHHHHhCCc
Confidence 6788999999999999999753
No 82
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=48.84 E-value=3.8e+02 Score=28.99 Aligned_cols=68 Identities=24% Similarity=0.316 Sum_probs=39.3
Q ss_pred hHhHHHHhhhccchhhhchHHHhhhhcCCCCCCCCCCcCCCCCCchHHHHHHHHHhHHHHHHHHHHHHHhhcch
Q 021279 68 LDDVKTRIQKSQPVAKRSVAELRRCNTDLRPNRAPRDKKLCEPITDDKEKLRRQLSASLAARKSLEVLCSSLGK 141 (315)
Q Consensus 68 LDdvk~RIqK~Qs~~krr~aeLRRCnTdLrp~~~P~DkKp~e~~~dekeklkkeL~ASlaArkSLe~mCSSLGK 141 (315)
|+.+..||...|...-.+-.++++|-.-|=--.. |.++..++...++ ++-.-=+..-.|+..+.-.++
T Consensus 137 lE~~q~~~e~~q~~l~~~~eei~kL~e~L~~~g~-----~~~~~~~~~~~~~-~~~~~e~~~~~le~lle~~e~ 204 (775)
T PF10174_consen 137 LEELQLRIETQQQTLDKADEEIEKLQEMLQSKGL-----SAEAEEEDNEALR-RIREAEARIMRLESLLERKEK 204 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC-----cccchhhhhHHHH-HHHHHHHHHHHHHHHHHHHHH
Confidence 5667778888877666688999999998821111 2244555555554 233333333455555554333
No 83
>PLN03229 acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional
Probab=48.75 E-value=2.3e+02 Score=30.86 Aligned_cols=63 Identities=19% Similarity=0.355 Sum_probs=31.6
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccccccHHHHHHHHHhhhhhhcchhhhhcccccccCC
Q 021279 229 VKEENTAMRATMEELGKKVEAGIDQILGFRQRIATKEEQEVDIEEEITALEGMFDSFNMKIKKHIQNKSDCGK 301 (315)
Q Consensus 229 ~qeEN~~i~~tme~~~~~V~aG~~~i~~fr~R~~~~~eq~~dIeeEisaLe~mfe~~~mKi~kh~qkKs~c~k 301 (315)
++++=-.+.+....+|.....++| ..|++.|..-++. |+. .+|..+.+.++++. ...|.+-++
T Consensus 576 ~kek~ea~~aev~~~g~s~~~~~~--~~lkeki~~~~~E---i~~---eie~v~~S~gL~~~--~~~k~e~a~ 638 (762)
T PLN03229 576 IKEKMEALKAEVASSGASSGDELD--DDLKEKVEKMKKE---IEL---ELAGVLKSMGLEVI--GVTKKNKDT 638 (762)
T ss_pred HHHHHHHHHHHHHhcCccccCCCC--HHHHHHHHHHHHH---HHH---HHHHHHhccCchhh--hhhhhhhcc
Confidence 344433333333334433333333 2455555544422 333 46788889998887 555554433
No 84
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=47.98 E-value=1.6e+02 Score=24.51 Aligned_cols=15 Identities=27% Similarity=0.638 Sum_probs=9.4
Q ss_pred cHHHHHHHHHhhhhh
Q 021279 270 DIEEEITALEGMFDS 284 (315)
Q Consensus 270 dIeeEisaLe~mfe~ 284 (315)
++++.|..++.+-++
T Consensus 176 ~l~~~~~~~~~l~~~ 190 (191)
T PF04156_consen 176 QLEEKIQELQELLEQ 190 (191)
T ss_pred HHHHHHHHHHHHHhh
Confidence 466667666666554
No 85
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=47.49 E-value=3.3e+02 Score=29.01 Aligned_cols=52 Identities=29% Similarity=0.319 Sum_probs=36.2
Q ss_pred HHHHHHhhHHHHHHHHHhHHhhhhhcccccccccchhhHHhhHHHHHHHHhhhhhhHHHHHH
Q 021279 164 INDFKAQNASLLAKVQNCAAEHKEKKCSAGEIQGNAALQERNKALSEHLLKSLDGYRSLKKK 225 (315)
Q Consensus 164 i~DlkAQN~~Ll~K~q~~a~e~k~~~~s~~e~~gN~aLq~RNkaLSeqLlKSiDgyRSlKrk 225 (315)
|..||.||+.|.+++|+.-. -- ++=..|.+|-++|-.-+-|-+..---||-|
T Consensus 273 i~~lk~~n~~l~e~i~ea~k-~s---------~~i~~l~ek~r~l~~D~nk~~~~~~~mk~K 324 (622)
T COG5185 273 IANLKTQNDNLYEKIQEAMK-IS---------QKIKTLREKWRALKSDSNKYENYVNAMKQK 324 (622)
T ss_pred HHHHHHHHHHHHHHHHHHHH-HH---------HHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 45678999999999987543 11 233568899999987777766555555554
No 86
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=47.35 E-value=3.4e+02 Score=31.02 Aligned_cols=74 Identities=27% Similarity=0.489 Sum_probs=51.7
Q ss_pred hhhhhhHHHHHHHHHHhhHHHHHHHHHhHH-hhhhhccccccc-ccchhhHHhhHHHHHHHHhhhhhhHHHHHHhHHHHH
Q 021279 154 VHELNEMEELINDFKAQNASLLAKVQNCAA-EHKEKKCSAGEI-QGNAALQERNKALSEHLLKSLDGYRSLKKKYKYVKE 231 (315)
Q Consensus 154 v~ELnemEeli~DlkAQN~~Ll~K~q~~a~-e~k~~~~s~~e~-~gN~aLq~RNkaLSeqLlKSiDgyRSlKrkyk~~qe 231 (315)
-.-+-++|++++-++..|+.|+.++|+... .+| +.-. |.|.-+ --.+..+.|-||.+-+|+|-.+.+.+
T Consensus 529 ~~k~eeLe~~l~~lE~ENa~LlkqI~~Lk~t~qn-----~~~LEq~~n~l----E~~~~elkk~idaL~alrrhke~LE~ 599 (1195)
T KOG4643|consen 529 SNKLEELEELLGNLEEENAHLLKQIQSLKTTSQN-----GALLEQNNNDL----ELIHNELKKYIDALNALRRHKEKLEE 599 (1195)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhHH-----HHHHHHhhhHH----HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556788999999999999999999876 333 1111 222211 22356678889999999999988888
Q ss_pred H--hHHH
Q 021279 232 E--NTAM 236 (315)
Q Consensus 232 E--N~~i 236 (315)
+ |..+
T Consensus 600 e~mnQql 606 (1195)
T KOG4643|consen 600 EIMNQQL 606 (1195)
T ss_pred HHhhhhh
Confidence 8 6544
No 87
>smart00878 Biotin_carb_C Biotin carboxylase C-terminal domain. Biotin carboxylase is a component of the acetyl-CoA carboxylase multi-component enzyme which catalyses the first committed step in fatty acid synthesis in animals, plants and bacteria. Most of the active site residues reported in reference are in this C-terminal domain.
Probab=47.33 E-value=7.5 Score=31.43 Aligned_cols=21 Identities=24% Similarity=0.637 Sum_probs=19.1
Q ss_pred CccchhhhhhhHHHHHHHHhh
Q 021279 24 EDLSFEGIAANVKLLLKLIQD 44 (315)
Q Consensus 24 ed~slEGiatNvKLLLKLiQd 44 (315)
.++.++||.||+.+|..|+.+
T Consensus 73 ~e~~i~Gv~TN~~~l~~ll~~ 93 (107)
T smart00878 73 DEFRIEGVKTNIPFLRALLRH 93 (107)
T ss_pred HhCEEECccCCHHHHHHHhcC
Confidence 688999999999999998876
No 88
>PF00015 MCPsignal: Methyl-accepting chemotaxis protein (MCP) signalling domain; InterPro: IPR004089 Methyl-accepting chemotaxis proteins (MCPs) are a family of bacterial receptors that mediate chemotaxis to diverse signals, responding to changes in the concentration of attractants and repellents in the environment by altering swimming behaviour []. Environmental diversity gives rise to diversity in bacterial signalling receptors, and consequently there are many genes encoding MCPs []. For example, there are four well-characterised MCPs found in Escherichia coli: Tar (taxis towards aspartate and maltose, away from nickel and cobalt), Tsr (taxis towards serine, away from leucine, indole and weak acids), Trg (taxis towards galactose and ribose) and Tap (taxis towards dipeptides). MCPs share similar topology and signalling mechanisms. MCPs either bind ligands directly or interact with ligand-binding proteins, transducing the signal to downstream signalling proteins in the cytoplasm. MCPs undergo two covalent modifications: deamidation and reversible methylation at a number of glutamate residues. Attractants increase the level of methylation, while repellents decrease it. The methyl groups are added by the methyl-transferase cheR and are removed by the methylesterase cheB. Most MCPs are homodimers that contain the following organisation: an N-terminal signal sequence that acts as a transmembrane domain in the mature protein; a poorly-conserved periplasmic receptor (ligand-binding) domain; a second transmembrane domain; and a highly-conserved C-terminal cytoplasmic domain that interacts with downstream signalling components. The C-terminal domain contains the glycosylated glutamate residues. This entry represents the signalling domain found in several methyl-accepting chemotaxis proteins. This domain is thought to transduce the signal to CheA since it is highly conserved in very diverse MCPs.; GO: 0004871 signal transducer activity, 0007165 signal transduction, 0016020 membrane; PDB: 2CH7_A 3ZX6_B 1QU7_A 3G6B_B 3UR1_C 3G67_B.
Probab=47.33 E-value=1.5e+02 Score=23.95 Aligned_cols=54 Identities=20% Similarity=0.432 Sum_probs=30.1
Q ss_pred HhHHHHHHHHHHHHHhhcchhhhHhHHHHHHHhhh----hhhHHHHHHHHHHhhHHHHHHHHH
Q 021279 122 LSASLAARKSLEVLCSSLGKEKEIMAGELARKVHE----LNEMEELINDFKAQNASLLAKVQN 180 (315)
Q Consensus 122 L~ASlaArkSLe~mCSSLGKEKeIMA~ElaRKv~E----LnemEeli~DlkAQN~~Ll~K~q~ 180 (315)
||||+=|-++ ..-|+---+.|.|+-+-+.. ..++..+|.++..+......-++.
T Consensus 61 lNAsIEAara-----Ge~G~gF~vvA~eir~LA~~t~~~~~~I~~~i~~i~~~~~~~~~~~~~ 118 (213)
T PF00015_consen 61 LNASIEAARA-----GEAGRGFAVVADEIRKLAEQTSESAKEISEIIEEIQEQISQVVESMEE 118 (213)
T ss_dssp HHHHHHHHHT-----CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHH
T ss_pred hhhccccchh-----cccchhHHHHHHHHHHhhhhhhhHHHHHHHHHhhhhhhhhhhhhhhhc
Confidence 6777654443 34577777888775444333 234566666666654444433333
No 89
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=47.10 E-value=1.8e+02 Score=26.80 Aligned_cols=45 Identities=24% Similarity=0.225 Sum_probs=25.1
Q ss_pred hHHHHHHHHHhHHHHHHHHHHHHHhhcchhhhHhHHHHHHHhhhh
Q 021279 113 DDKEKLRRQLSASLAARKSLEVLCSSLGKEKEIMAGELARKVHEL 157 (315)
Q Consensus 113 dekeklkkeL~ASlaArkSLe~mCSSLGKEKeIMA~ElaRKv~EL 157 (315)
++-++++-+|-..+..-+.-+..-.-+-+|++-.-.|=.+-|.||
T Consensus 11 ~~lek~k~~i~~e~~~~e~ee~~L~e~~kE~~~L~~Er~~h~eeL 55 (230)
T PF10146_consen 11 LELEKLKNEILQEVESLENEEKCLEEYRKEMEELLQERMAHVEEL 55 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666666666666666666555555555555444444444444
No 90
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=46.90 E-value=4.3e+02 Score=29.06 Aligned_cols=104 Identities=21% Similarity=0.223 Sum_probs=64.5
Q ss_pred HHHHHHhhcchhhhHhHHHHHHHhhhhh-----hHHHHHHHHHHhhHHHHHHHHHhHHhh------------hhhccccc
Q 021279 131 SLEVLCSSLGKEKEIMAGELARKVHELN-----EMEELINDFKAQNASLLAKVQNCAAEH------------KEKKCSAG 193 (315)
Q Consensus 131 SLe~mCSSLGKEKeIMA~ElaRKv~ELn-----emEeli~DlkAQN~~Ll~K~q~~a~e~------------k~~~~s~~ 193 (315)
+|+---..+.+|++-+-.++.+..+++. .+-++.+++.+|-+.+-+.+++.-.++ .+=...|+
T Consensus 689 ~l~~~l~~~~~e~~~~~~~~~~~~~e~~~e~~~~~~~~~~~~d~~i~~i~~~i~~~~~~~~~~~~~le~~~~~eL~~~Gv 768 (1201)
T PF12128_consen 689 ELEEELKQLKQELEELLEELKEQLKELRNELKAQWQELEAELDEQIEQIKQEIAAAKQEAKEQLKELEQQYNQELAGKGV 768 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 3445556677777777777777666665 334556666655555544444332222 22234577
Q ss_pred ccccchhhHHhhHHHHHHHHhhhhhhHHHHHHhHHHHHHhHH
Q 021279 194 EIQGNAALQERNKALSEHLLKSLDGYRSLKKKYKYVKEENTA 235 (315)
Q Consensus 194 e~~gN~aLq~RNkaLSeqLlKSiDgyRSlKrkyk~~qeEN~~ 235 (315)
|..--..|..+-+.| ++.++.|...|.+=..|.+-..+...
T Consensus 769 D~~~I~~l~~~i~~L-~~~l~~ie~~r~~V~eY~~~~~~~~~ 809 (1201)
T PF12128_consen 769 DPERIQQLKQEIEQL-EKELKRIEERRAEVIEYEDWLQEEWD 809 (1201)
T ss_pred CHHHHHHHHHHHHHH-HHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 766556666666666 45678899999999999888777654
No 91
>PF11802 CENP-K: Centromere-associated protein K; InterPro: IPR020993 Cenp-K is one of seven new Cenp-A-nucleosome distal (CAD) centromere components (the others being Cenp-L, Cenp-O, Cenp-P, Cenp-Q, Cenp-R and Cenp-S) that are identified as assembling on the Cenp-A nucleosome associated complex, NAC []. The Cenp-A NAC is essential, as disruption of the complex causes errors of chromosome alignment and segregation that preclude cell survival despite continued centromere-derived mitotic checkpoint signalling. Cenp-K is centromere-associated through its interaction with one or more components of the Cenp-A NAC.; GO: 0005634 nucleus
Probab=46.49 E-value=1.6e+02 Score=28.36 Aligned_cols=85 Identities=22% Similarity=0.348 Sum_probs=58.4
Q ss_pred HHHHHhhhhhhHHHHHHHHHHhhHHH---HHHHHHhHHhhhhhcccccccccchhhHHhhHHHHHHHHhhhhh--hHHHH
Q 021279 149 ELARKVHELNEMEELINDFKAQNASL---LAKVQNCAAEHKEKKCSAGEIQGNAALQERNKALSEHLLKSLDG--YRSLK 223 (315)
Q Consensus 149 ElaRKv~ELnemEeli~DlkAQN~~L---l~K~q~~a~e~k~~~~s~~e~~gN~aLq~RNkaLSeqLlKSiDg--yRSlK 223 (315)
+|.+-++ +.|..++-.++.|+.| |+.-|++-.+|. +=+.+|..|-+.|-.+.-..=+. ++-|+
T Consensus 93 elqkl~~---eLe~vLs~~q~KnekLke~LerEq~wL~Eqq---------ql~~sL~~r~~elk~~~~~~se~rv~~el~ 160 (268)
T PF11802_consen 93 ELQKLIS---ELEMVLSTVQSKNEKLKEDLEREQQWLDEQQ---------QLLESLNKRHEELKNQVETFSESRVFQELK 160 (268)
T ss_pred HHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHhhhccchHHHHHHHH
Confidence 4555554 4577888889999886 566677777777 34568888888777665433332 57889
Q ss_pred HHhHHHHHHhHHHHHHHHHHHH
Q 021279 224 KKYKYVKEENTAMRATMEELGK 245 (315)
Q Consensus 224 rkyk~~qeEN~~i~~tme~~~~ 245 (315)
+|...+++.-..+-.+|.++=.
T Consensus 161 ~K~~~~k~~~e~Ll~~LgeFLe 182 (268)
T PF11802_consen 161 TKIEKIKEYKEKLLSFLGEFLE 182 (268)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 9988888777766666655433
No 92
>PF10226 DUF2216: Uncharacterized conserved proteins (DUF2216); InterPro: IPR019359 Proteins in this entry are found in Metazoa and contain a coiled-coil domain. Some annotation suggests it might be PKR, the Hepatitis delta antigen-interacting protein A, but this could not be confirmed.
Probab=45.95 E-value=2.5e+02 Score=26.13 Aligned_cols=60 Identities=22% Similarity=0.381 Sum_probs=35.0
Q ss_pred hhHHhhHHHHHHHHhhhhhhHHHHHHhHHHHHHhHHHHHHH---H---HHHHHHHHHHHHHHHHHHhhhh
Q 021279 200 ALQERNKALSEHLLKSLDGYRSLKKKYKYVKEENTAMRATM---E---ELGKKVEAGIDQILGFRQRIAT 263 (315)
Q Consensus 200 aLq~RNkaLSeqLlKSiDgyRSlKrkyk~~qeEN~~i~~tm---e---~~~~~V~aG~~~i~~fr~R~~~ 263 (315)
.+++=|+-|..||. -||+||--....|+||..+|... + +-|..|.-..+|.+++-..+++
T Consensus 42 lm~evNrrlQ~hl~----EIR~LKe~NqkLqedNqELRdLCCFLDddRqKgrklarEWQrFGryta~vmr 107 (195)
T PF10226_consen 42 LMKEVNRRLQQHLN----EIRGLKEVNQKLQEDNQELRDLCCFLDDDRQKGRKLAREWQRFGRYTASVMR 107 (195)
T ss_pred HHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHcccchhHHHhHHHhHHHHHhhhHHHHHHH
Confidence 45666666666655 47888877777778887776542 2 2344444444444444444433
No 93
>PRK04863 mukB cell division protein MukB; Provisional
Probab=45.67 E-value=5.4e+02 Score=29.79 Aligned_cols=37 Identities=19% Similarity=0.204 Sum_probs=22.9
Q ss_pred hhhhHhHHHHHHHhhhhhhHHHHHHHHHHhhHHHHHH
Q 021279 141 KEKEIMAGELARKVHELNEMEELINDFKAQNASLLAK 177 (315)
Q Consensus 141 KEKeIMA~ElaRKv~ELnemEeli~DlkAQN~~Ll~K 177 (315)
++++-.-.+|...-..|.++++++.++..+-..|-+.
T Consensus 293 ~rk~eA~kkLe~tE~nL~rI~diL~ELe~rL~kLEkQ 329 (1486)
T PRK04863 293 RELYTSRRQLAAEQYRLVEMARELAELNEAESDLEQD 329 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444556666667777777777777765555333
No 94
>KOG1850 consensus Myosin-like coiled-coil protein [Cytoskeleton]
Probab=45.38 E-value=2.8e+02 Score=28.11 Aligned_cols=94 Identities=28% Similarity=0.297 Sum_probs=56.0
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHhhcchhhhHhHHHHHHHhhhhhhHHHHHHHHHHhhHHHHHHHHHhHHhhhhhcccccc
Q 021279 115 KEKLRRQLSASLAARKSLEVLCSSLGKEKEIMAGELARKVHELNEMEELINDFKAQNASLLAKVQNCAAEHKEKKCSAGE 194 (315)
Q Consensus 115 keklkkeL~ASlaArkSLe~mCSSLGKEKeIMA~ElaRKv~ELnemEeli~DlkAQN~~Ll~K~q~~a~e~k~~~~s~~e 194 (315)
+.-+. .|+-+.-||--||-.|--|-+=---.-.|-.-++ -.-|+=-..--+|-..-|.-+|...++|+.
T Consensus 62 k~~~Q-~l~kt~larsKLeelCRelQr~nk~~keE~~~q~---k~eEerRkea~~~fqvtL~diqktla~~~~------- 130 (391)
T KOG1850|consen 62 KRNNQ-ILLKTELARSKLEELCRELQRANKQTKEEACAQM---KKEEERRKEAVEQFQVTLKDIQKTLAEGRS------- 130 (391)
T ss_pred HHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHhHHHHHHHHHHhcch-------
Confidence 33444 7888999999999999755432111111111111 112222233344555667788888887773
Q ss_pred cccchhhHHhhHHHHHHHHhhhhhhHH
Q 021279 195 IQGNAALQERNKALSEHLLKSLDGYRS 221 (315)
Q Consensus 195 ~~gN~aLq~RNkaLSeqLlKSiDgyRS 221 (315)
.|+-|.++|..||+.|-.-..-|--
T Consensus 131 --~n~klre~NieL~eKlkeL~eQy~~ 155 (391)
T KOG1850|consen 131 --KNDKLREDNIELSEKLKELGEQYEE 155 (391)
T ss_pred --hhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4777888888888777766666643
No 95
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=45.36 E-value=2e+02 Score=24.78 Aligned_cols=84 Identities=29% Similarity=0.371 Sum_probs=48.2
Q ss_pred HHhhhhhhHHHHHHHHHHhhHHHHHHHHHhHHhhhhhcccccccccchhhHHhhHHHHHHHHhhhhhhHHHHHHhHHHHH
Q 021279 152 RKVHELNEMEELINDFKAQNASLLAKVQNCAAEHKEKKCSAGEIQGNAALQERNKALSEHLLKSLDGYRSLKKKYKYVKE 231 (315)
Q Consensus 152 RKv~ELnemEeli~DlkAQN~~Ll~K~q~~a~e~k~~~~s~~e~~gN~aLq~RNkaLSeqLlKSiDgyRSlKrkyk~~qe 231 (315)
.+-.++.+-+.-|.+|.+.+..|-.++.....+-+++. ..|..|+|=.-+|-- -|-.+-.|+..+++
T Consensus 106 ~l~~~~~~~~~~l~~l~~~~~~L~~~~~~l~~~l~ek~------k~~e~l~DE~~~L~l-------~~~~~e~k~~~l~~ 172 (194)
T PF08614_consen 106 ELEKELSEKERRLAELEAELAQLEEKIKDLEEELKEKN------KANEILQDELQALQL-------QLNMLEEKLRKLEE 172 (194)
T ss_dssp --------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHH-------HHHHHHHHHHHHHH
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHH-------HHHHHHHHHHHHHH
Confidence 33345556666778888888888888877777554311 123333333322222 35678888999999
Q ss_pred HhHHH-HHHHHHHHHHHH
Q 021279 232 ENTAM-RATMEELGKKVE 248 (315)
Q Consensus 232 EN~~i-~~tme~~~~~V~ 248 (315)
||..+ .+-|..++.+.+
T Consensus 173 En~~Lv~Rwm~~k~~eAe 190 (194)
T PF08614_consen 173 ENRELVERWMQRKAQEAE 190 (194)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 99875 456666666554
No 96
>PRK14127 cell division protein GpsB; Provisional
Probab=44.52 E-value=71 Score=26.71 Aligned_cols=72 Identities=21% Similarity=0.359 Sum_probs=48.5
Q ss_pred HHHHHHhhhhhhHHHHHHhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccccccHHHHHHHHHh
Q 021279 208 LSEHLLKSLDGYRSLKKKYKYVKEENTAMRATMEELGKKVEAGIDQILGFRQRIATKEEQEVDIEEEITALEG 280 (315)
Q Consensus 208 LSeqLlKSiDgyRSlKrkyk~~qeEN~~i~~tme~~~~~V~aG~~~i~~fr~R~~~~~eq~~dIeeEisaLe~ 280 (315)
..+-|-.-++.|..|-+.....+++|..+...++++...+.+.-..-.. ...-....---+||-.-||.||+
T Consensus 28 VD~FLd~V~~dye~l~~e~~~Lk~e~~~l~~~l~e~~~~~~~~~~~~~~-~~~~~~~~~tn~DiLKRls~LEk 99 (109)
T PRK14127 28 VDKFLDDVIKDYEAFQKEIEELQQENARLKAQVDELTKQVSVGASSSSV-ATTQPSSSATNYDILKRLSNLEK 99 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccc-cccCCCCCcchHHHHHHHHHHHH
Confidence 3445555677899999999999999999999999988877643211000 00000112245899999999997
No 97
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=44.03 E-value=1.9e+02 Score=24.16 Aligned_cols=47 Identities=26% Similarity=0.409 Sum_probs=32.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccccccHHHHHHHHHhhhhhh
Q 021279 233 NTAMRATMEELGKKVEAGIDQILGFRQRIATKEEQEVDIEEEITALEGMFDSF 285 (315)
Q Consensus 233 N~~i~~tme~~~~~V~aG~~~i~~fr~R~~~~~eq~~dIeeEisaLe~mfe~~ 285 (315)
|..|...+.++..++..=-+|+..|++ ... .|+ .+|+..+++-|..+
T Consensus 111 ~~el~~~i~~l~~e~~~l~~kL~~l~~---~~~--~vs-~ee~~~~~~~~~~~ 157 (169)
T PF07106_consen 111 NEELREEIEELEEEIEELEEKLEKLRS---GSK--PVS-PEEKEKLEKEYKKW 157 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh---CCC--CCC-HHHHHHHHHHHHHH
Confidence 455666777777777777777888876 222 244 67889998888765
No 98
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=43.96 E-value=1.1e+02 Score=23.43 Aligned_cols=42 Identities=24% Similarity=0.354 Sum_probs=36.2
Q ss_pred HHHHHHHhhhhhhHHHHHHhHHHHHHhHHHHHHHHHHHHHHH
Q 021279 207 ALSEHLLKSLDGYRSLKKKYKYVKEENTAMRATMEELGKKVE 248 (315)
Q Consensus 207 aLSeqLlKSiDgyRSlKrkyk~~qeEN~~i~~tme~~~~~V~ 248 (315)
.+++.|-|-=..|-.+.++++++...|+.+..-++.+..++.
T Consensus 15 ~~~eEL~kvk~~n~~~e~kLqeaE~rn~eL~~ei~~L~~e~e 56 (61)
T PF08826_consen 15 AIQEELTKVKSANLAFESKLQEAEKRNRELEQEIERLKKEME 56 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 578888888889999999999999999999888888776653
No 99
>PF13949 ALIX_LYPXL_bnd: ALIX V-shaped domain binding to HIV ; PDB: 2XS1_A 2XS8_A 2R03_A 2R02_A 2OEX_B 2OEV_A 2OJQ_A 2R05_A.
Probab=43.57 E-value=2.3e+02 Score=24.92 Aligned_cols=38 Identities=24% Similarity=0.469 Sum_probs=23.9
Q ss_pred HHHHHHHhhhhhhHHHHHHhHHHHHHhHHHHHHHHHHHHHH
Q 021279 207 ALSEHLLKSLDGYRSLKKKYKYVKEENTAMRATMEELGKKV 247 (315)
Q Consensus 207 aLSeqLlKSiDgyRSlKrkyk~~qeEN~~i~~tme~~~~~V 247 (315)
.+...+...|..|+ ..+..+++-|..++..++.+...+
T Consensus 77 ~~~~~l~~~l~~~~---~~L~~A~~sD~~~~~~~~~~~~~l 114 (296)
T PF13949_consen 77 ELNASLRKELQKYR---EYLEQASESDSQLRSKLESIEENL 114 (296)
T ss_dssp HHCHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHH---HHHHHHHhhHHHHHHHHHHHHHHH
Confidence 34445555555554 346667777888888777765543
No 100
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=43.46 E-value=4.2e+02 Score=27.94 Aligned_cols=11 Identities=18% Similarity=0.335 Sum_probs=6.5
Q ss_pred hcccccccCCC
Q 021279 292 HIQNKSDCGKP 302 (315)
Q Consensus 292 h~qkKs~c~kp 302 (315)
|...-.-|+.|
T Consensus 456 ~~~~CPvCg~~ 466 (908)
T COG0419 456 AGEKCPVCGQE 466 (908)
T ss_pred CCCCCCCCCCC
Confidence 44456677754
No 101
>PRK10698 phage shock protein PspA; Provisional
Probab=43.43 E-value=2.5e+02 Score=25.27 Aligned_cols=102 Identities=18% Similarity=0.329 Sum_probs=0.0
Q ss_pred hhhHhHHHHHHHhhhhhhHHHHHHHHHHhhHHHHHHHHHhHHhhhhhcccccccccchhhHHhhHHHHHHHHhhhhhhHH
Q 021279 142 EKEIMAGELARKVHELNEMEELINDFKAQNASLLAKVQNCAAEHKEKKCSAGEIQGNAALQERNKALSEHLLKSLDGYRS 221 (315)
Q Consensus 142 EKeIMA~ElaRKv~ELnemEeli~DlkAQN~~Ll~K~q~~a~e~k~~~~s~~e~~gN~aLq~RNkaLSeqLlKSiDgyRS 221 (315)
+|.-.+..++.--.++...+..+..|+.+-..|-.||+....+++ .
T Consensus 93 ~K~~~~~~~~~l~~~~~~~~~~~~~L~~~l~~L~~ki~eak~k~~----------------------------------~ 138 (222)
T PRK10698 93 EKQKLTDLIATLEHEVTLVDETLARMKKEIGELENKLSETRARQQ----------------------------------A 138 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------------------------H
Q ss_pred HHHHhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccc--------ccHHHHHHHHHh
Q 021279 222 LKKKYKYVKEENTAMRATMEELGKKVEAGIDQILGFRQRIATKEEQE--------VDIEEEITALEG 280 (315)
Q Consensus 222 lKrkyk~~qeEN~~i~~tme~~~~~V~aG~~~i~~fr~R~~~~~eq~--------~dIeeEisaLe~ 280 (315)
|+-+++-++-- ..|+.+|. +.+++-.+.++.++-+||..-.-++ .+|+.|+.+|+.
T Consensus 139 L~aR~~~A~a~-~~~~~~~~--~~~~~~a~~~f~rmE~ki~~~Ea~aea~~~~~~~~l~~e~~~le~ 202 (222)
T PRK10698 139 LMLRHQAASSS-RDVRRQLD--SGKLDEAMARFESFERRIDQMEAEAESHGFGKQKSLDQQFAELKA 202 (222)
T ss_pred HHHHHHHHHHH-HHHHHHHh--CCCcchHHHHHHHHHHHHHHHHHHHhHhhccCCCCHHHHHHHhhc
No 102
>COG4345 Uncharacterized protein conserved in archaea [Function unknown]
Probab=43.34 E-value=34 Score=31.36 Aligned_cols=83 Identities=23% Similarity=0.241 Sum_probs=48.3
Q ss_pred HHHHHhhhhhhHHHHHHHHHHhhHHHHHHHHHhHHhhhhhcccccccccchhhHHhhHHHHHHHHhhhhhhHHHHHHhHH
Q 021279 149 ELARKVHELNEMEELINDFKAQNASLLAKVQNCAAEHKEKKCSAGEIQGNAALQERNKALSEHLLKSLDGYRSLKKKYKY 228 (315)
Q Consensus 149 ElaRKv~ELnemEeli~DlkAQN~~Ll~K~q~~a~e~k~~~~s~~e~~gN~aLq~RNkaLSeqLlKSiDgyRSlKrkyk~ 228 (315)
|++|-|.||| -.|++|++.-.. +| -.-+.+.--+-..++-=..+.--+.-.=-|--+-.||.+
T Consensus 67 eIvravseln-------------k~i~EkliemgV-gk---~DVvrIsv~~~~~dgkL~~~~l~i~~~V~~~el~eK~~~ 129 (181)
T COG4345 67 EIVRAVSELN-------------KRIYEKLIEMGV-GK---LDVVRISVDADIEDGKLNFEALTIGIEVYPKELEEKLAD 129 (181)
T ss_pred HHHHHHHHHh-------------HHHHHHHHHhcc-Cc---cceEEEEEEEEecCCccccccceeeEEecccHHHHHHHH
Confidence 5666666665 689999998433 11 122333223333333111111111122234568899999
Q ss_pred HHHHhHHHHHHHHHHHHHHH
Q 021279 229 VKEENTAMRATMEELGKKVE 248 (315)
Q Consensus 229 ~qeEN~~i~~tme~~~~~V~ 248 (315)
+++||.+|..|++++--+..
T Consensus 130 ~~~Everi~~~ieE~v~eLe 149 (181)
T COG4345 130 AMEEVERIEKTIEELVSELE 149 (181)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 99999999999998765543
No 103
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=43.10 E-value=1.1e+02 Score=25.18 Aligned_cols=43 Identities=30% Similarity=0.377 Sum_probs=36.4
Q ss_pred hhHHhhHHHHHHHHhhhhhhHHHHHHhHHHHHHhHHHHHHHHH
Q 021279 200 ALQERNKALSEHLLKSLDGYRSLKKKYKYVKEENTAMRATMEE 242 (315)
Q Consensus 200 aLq~RNkaLSeqLlKSiDgyRSlKrkyk~~qeEN~~i~~tme~ 242 (315)
.|=++-..|++||..-++....||.....+-|||..++.--+.
T Consensus 5 ~l~~~l~~le~~l~~l~~~~~~LK~~~~~l~EEN~~L~~EN~~ 47 (107)
T PF06156_consen 5 ELFDRLDQLEQQLGQLLEELEELKKQLQELLEENARLRIENEH 47 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556778899999999999999999999999999988765443
No 104
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=43.06 E-value=1.9e+02 Score=28.56 Aligned_cols=116 Identities=22% Similarity=0.298 Sum_probs=78.7
Q ss_pred HHHHHHHhhcchhhhHhHHHHHHHhhhhhhHHHHHHHHHHhhHHHHHHHHHhHHhhhhhcccccccc-----cchhhHHh
Q 021279 130 KSLEVLCSSLGKEKEIMAGELARKVHELNEMEELINDFKAQNASLLAKVQNCAAEHKEKKCSAGEIQ-----GNAALQER 204 (315)
Q Consensus 130 kSLe~mCSSLGKEKeIMA~ElaRKv~ELnemEeli~DlkAQN~~Ll~K~q~~a~e~k~~~~s~~e~~-----gN~aLq~R 204 (315)
.+|--.|..|-|=++-+..+|.-|-..++-+|--++-.|.|.+.|-..|.-|..|--++.-.+..++ ++-+-.-=
T Consensus 70 q~l~e~c~~lek~rqKlshdlq~Ke~qv~~lEgQl~s~Kkqie~Leqelkr~KsELErsQ~~~~~~~~sl~~~stpqk~f 149 (307)
T PF10481_consen 70 QSLMESCENLEKTRQKLSHDLQVKESQVNFLEGQLNSCKKQIEKLEQELKRCKSELERSQQAASSGDVSLNPCSTPQKSF 149 (307)
T ss_pred hhHHHHHHHHHHHHHHhhHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCccccccCCchhhc
Confidence 4677789999999999999999999999999999999999999999998888875444333332222 22211000
Q ss_pred hHHHHHHHHhhhhhhHHHHHHhHHHHHHhHHHHHHHHHHHH
Q 021279 205 NKALSEHLLKSLDGYRSLKKKYKYVKEENTAMRATMEELGK 245 (315)
Q Consensus 205 NkaLSeqLlKSiDgyRSlKrkyk~~qeEN~~i~~tme~~~~ 245 (315)
---+...--.+=--|--|+.||..--||...+-+-+..+-+
T Consensus 150 ~~p~tp~q~~~~sk~e~L~ekynkeveerkrle~e~k~lq~ 190 (307)
T PF10481_consen 150 ATPLTPSQYYSDSKYEELQEKYNKEVEERKRLEAEVKALQA 190 (307)
T ss_pred cCCCChhhhhhhhhHHHHHHHHHHHHHHHhhHHHHHHHHhc
Confidence 00001111111235788999998888888877776665543
No 105
>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=42.86 E-value=57 Score=23.36 Aligned_cols=27 Identities=44% Similarity=0.706 Sum_probs=16.9
Q ss_pred hhHHHHHHhHHHHHHhHHHHHHHHHHH
Q 021279 218 GYRSLKKKYKYVKEENTAMRATMEELG 244 (315)
Q Consensus 218 gyRSlKrkyk~~qeEN~~i~~tme~~~ 244 (315)
.|-+||..|.-++.||..+++.+..+.
T Consensus 13 ~yd~Lk~~~~~L~~E~~~L~aev~~L~ 39 (45)
T PF02183_consen 13 SYDSLKAEYDSLKKENEKLRAEVQELK 39 (45)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666666666666666666655544
No 106
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=41.43 E-value=88 Score=29.68 Aligned_cols=105 Identities=30% Similarity=0.400 Sum_probs=0.0
Q ss_pred hHhHHHHhhhc--------------cchhhhchHHHhhhhcCCCCCCCCCCcCCCCCCchHHHHHHHHHhHHH-------
Q 021279 68 LDDVKTRIQKS--------------QPVAKRSVAELRRCNTDLRPNRAPRDKKLCEPITDDKEKLRRQLSASL------- 126 (315)
Q Consensus 68 LDdvk~RIqK~--------------Qs~~krr~aeLRRCnTdLrp~~~P~DkKp~e~~~dekeklkkeL~ASl------- 126 (315)
+|++..||+|. .|.+....|+|.|=--.| +..++.--||-.++.+..-++|
T Consensus 90 l~~l~akI~k~~~el~~L~TYkD~EYPvK~vqIa~L~rqlq~l--------k~~qqdEldel~e~~~~el~~l~~~~q~k 161 (258)
T PF15397_consen 90 LEQLDAKIQKTQEELNFLSTYKDHEYPVKAVQIANLVRQLQQL--------KDSQQDELDELNEMRQMELASLSRKIQEK 161 (258)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred -------HHHHHHHHHHhhcch---hhhHhHHHHHHHhhhhhhHHHHHHHHHHhhHHHHHHHHH
Q 021279 127 -------AARKSLEVLCSSLGK---EKEIMAGELARKVHELNEMEELINDFKAQNASLLAKVQN 180 (315)
Q Consensus 127 -------aArkSLe~mCSSLGK---EKeIMA~ElaRKv~ELnemEeli~DlkAQN~~Ll~K~q~ 180 (315)
||.+++.-|=++|=+ +-.-|..|+-+--.+.+++|+-|..|+|..+.|....++
T Consensus 162 ~~~il~~~~~k~~~~~~~~l~~~~~~N~~m~kei~~~re~i~el~e~I~~L~~eV~~L~~~~~~ 225 (258)
T PF15397_consen 162 KEEILSSAAEKTQSPMQPALLQRTLENQVMQKEIVQFREEIDELEEEIPQLRAEVEQLQAQAQD 225 (258)
T ss_pred HHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
No 107
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=41.07 E-value=2.4e+02 Score=24.35 Aligned_cols=41 Identities=10% Similarity=0.173 Sum_probs=25.9
Q ss_pred hhHhHHHHHHHhhhhhhHHHHHHHHHHhhHHHHHHHHHhHH
Q 021279 143 KEIMAGELARKVHELNEMEELINDFKAQNASLLAKVQNCAA 183 (315)
Q Consensus 143 KeIMA~ElaRKv~ELnemEeli~DlkAQN~~Ll~K~q~~a~ 183 (315)
..-+..++..+-..+..+.+.|..++.+++..-+++.....
T Consensus 58 ~~~~~~~~~~~~~r~~~l~~~i~~~~~~i~~~r~~l~~~~~ 98 (302)
T PF10186_consen 58 IQQLKREIEELRERLERLRERIERLRKRIEQKRERLEELRE 98 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455666666666777777777777777666666555433
No 108
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=40.88 E-value=4.5e+02 Score=27.59 Aligned_cols=66 Identities=24% Similarity=0.267 Sum_probs=46.5
Q ss_pred HHHHHHHhHHHHHHHHHHHHHhhcchhhhHhHHHHHHHhhhhhhHHHHHHHHHHhhHHHHHHHHHh
Q 021279 116 EKLRRQLSASLAARKSLEVLCSSLGKEKEIMAGELARKVHELNEMEELINDFKAQNASLLAKVQNC 181 (315)
Q Consensus 116 eklkkeL~ASlaArkSLe~mCSSLGKEKeIMA~ElaRKv~ELnemEeli~DlkAQN~~Ll~K~q~~ 181 (315)
.-|..+|.-.+--+.-|.--+..|-+|.+-|-.++.+--.+|+..++=...|+.++..+....+..
T Consensus 139 ~~lQ~qlE~~qkE~eeL~~~~~~Le~e~~~l~~~v~~l~~eL~~~~ee~e~L~~~~kel~~~~e~l 204 (546)
T PF07888_consen 139 QLLQNQLEECQKEKEELLKENEQLEEEVEQLREEVERLEAELEQEEEEMEQLKQQQKELTESSEEL 204 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346667777676677777777888888877777777777777777776666777776666555443
No 109
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=40.59 E-value=1.7e+02 Score=22.57 Aligned_cols=77 Identities=17% Similarity=0.330 Sum_probs=41.5
Q ss_pred HHHHHHHHhhhhhhHHHHHHhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccccccHHHHHHHHHhhhhhh
Q 021279 206 KALSEHLLKSLDGYRSLKKKYKYVKEENTAMRATMEELGKKVEAGIDQILGFRQRIATKEEQEVDIEEEITALEGMFDSF 285 (315)
Q Consensus 206 kaLSeqLlKSiDgyRSlKrkyk~~qeEN~~i~~tme~~~~~V~aG~~~i~~fr~R~~~~~eq~~dIeeEisaLe~mfe~~ 285 (315)
...-++++.--+-||++..++..++.+=-.+-. +||.--.+| +-...++.++..-+++--++|+++..++.-++.+
T Consensus 25 ~~~vd~i~~ld~~~r~l~~~~e~lr~~rN~~sk---~I~~~~~~~-~~~~~l~~e~~~lk~~i~~le~~~~~~e~~l~~~ 100 (108)
T PF02403_consen 25 EEDVDEIIELDQERRELQQELEELRAERNELSK---EIGKLKKAG-EDAEELKAEVKELKEEIKELEEQLKELEEELNEL 100 (108)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHCHTT-CCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH---HHHHHhhCc-ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345667777777888888888877766554443 344444444 2233344433333333334555555555544444
Q ss_pred c
Q 021279 286 N 286 (315)
Q Consensus 286 ~ 286 (315)
-
T Consensus 101 l 101 (108)
T PF02403_consen 101 L 101 (108)
T ss_dssp H
T ss_pred H
Confidence 3
No 110
>PF05598 DUF772: Transposase domain (DUF772); InterPro: IPR008490 This presumed domain is found at the N terminus of transposase insH and other related transposases.
Probab=40.27 E-value=42 Score=24.09 Aligned_cols=52 Identities=29% Similarity=0.312 Sum_probs=32.9
Q ss_pred HHHhhhhhhHHHHHHhHHHHHHhHHHHHHHHHHHHHHHHHHHH--HHHHHHhhhhhc
Q 021279 211 HLLKSLDGYRSLKKKYKYVKEENTAMRATMEELGKKVEAGIDQ--ILGFRQRIATKE 265 (315)
Q Consensus 211 qLlKSiDgyRSlKrkyk~~qeEN~~i~~tme~~~~~V~aG~~~--i~~fr~R~~~~~ 265 (315)
-+++.+-|++|-.. +-+.=..|-.++..+. +..+ +...|. |.+||+|....+
T Consensus 14 ll~~~~~~~~S~r~-l~~~l~~~~~~r~~~g-~~~~-~~~pd~stl~rfr~rl~~~~ 67 (77)
T PF05598_consen 14 LLLKYLFGLRSDRE-LEERLRDNLSFRYFCG-LSLE-EPVPDHSTLSRFRKRLIQHG 67 (77)
T ss_pred HHHHHHHhcchHHH-HHhhHhhhhHHHHHHh-cccC-CCCCChHHHHHHHHHHhhcc
Confidence 45666777766543 3344456777777776 4444 444555 899999887654
No 111
>PF07716 bZIP_2: Basic region leucine zipper; InterPro: IPR011700 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotes are proteins that contain a basic region mediating sequence-specific DNA-binding, followed by a leucine zipper region (see IPR002158 from INTERPRO), which is required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1NWQ_A 1H89_B 1H88_A 1GTW_B 2E43_A 1IO4_A 1GU4_B 2E42_A 1H8A_B 1GU5_B ....
Probab=40.27 E-value=1.3e+02 Score=21.20 Aligned_cols=50 Identities=26% Similarity=0.443 Sum_probs=36.4
Q ss_pred hHHHHHHHHHhHHHHHHHHHHHHHhhcchhhhHhHHHHHHHhhhhhhHHHHHHHHHHhhHHHHHHHHHh
Q 021279 113 DDKEKLRRQLSASLAARKSLEVLCSSLGKEKEIMAGELARKVHELNEMEELINDFKAQNASLLAKVQNC 181 (315)
Q Consensus 113 dekeklkkeL~ASlaArkSLe~mCSSLGKEKeIMA~ElaRKv~ELnemEeli~DlkAQN~~Ll~K~q~~ 181 (315)
+|..+.++. .--.||++|-+ ||=....+||.-|.+|...|..|-..+...
T Consensus 2 ~~~~~~rR~-rNr~AA~r~R~------------------rkk~~~~~le~~~~~L~~en~~L~~~i~~L 51 (54)
T PF07716_consen 2 DEEKRERRE-RNREAARRSRQ------------------RKKQREEELEQEVQELEEENEQLRQEIAQL 51 (54)
T ss_dssp CHHHHHHHH-HHHHHHHHHHH------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHH-HHHHHHHHHHH------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566666 66778887753 556667788999999999999997776543
No 112
>PF04065 Not3: Not1 N-terminal domain, CCR4-Not complex component ; InterPro: IPR007207 The Ccr4-Not complex (Not1, Not2, Not3, Not4 and Not5) is a global regulator of transcription that affects genes positively and negatively and is thought to regulate transcription factor TFIID []. This domain is the N-terminal region of the Not proteins.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=39.91 E-value=89 Score=28.99 Aligned_cols=118 Identities=22% Similarity=0.347 Sum_probs=69.9
Q ss_pred CcchhhhhhHHhhHhHHHHhhhcc--chhhhchHHHhhhhcCCCCCC-------CCCCcCCCCCCchHHHHHHHHHhHHH
Q 021279 56 RKPQRIAGMITILDDVKTRIQKSQ--PVAKRSVAELRRCNTDLRPNR-------APRDKKLCEPITDDKEKLRRQLSASL 126 (315)
Q Consensus 56 rK~qRvagMmtILDdvk~RIqK~Q--s~~krr~aeLRRCnTdLrp~~-------~P~DkKp~e~~~dekeklkkeL~ASl 126 (315)
|=+.+|+--|.+.|++-.+++.+. +.+-+=.+.|+++---|.+.| +..|-| |+.. -+
T Consensus 12 ~~lKkv~EG~~~F~~i~~K~~~~~n~~QKEK~E~DLKkEIKKLQR~RdQIK~W~~~~diK-------dk~~-------L~ 77 (233)
T PF04065_consen 12 RTLKKVQEGVEEFDEIYEKVESATNQNQKEKLEADLKKEIKKLQRLRDQIKTWLSSNDIK-------DKKK-------LL 77 (233)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcccCcchHHHHHHHHHHHHHHHHHHHHHHHHHccCcccc-------cHHH-------HH
Confidence 445688888999999999999873 333345566776655554442 222222 2222 23
Q ss_pred HHHHHHHH-H-----------HhhcchhhhHhHHH-----HHHHhhhhhhHHHHHHHHHHhhHHHHHHHHHhHHhhhhh
Q 021279 127 AARKSLEV-L-----------CSSLGKEKEIMAGE-----LARKVHELNEMEELINDFKAQNASLLAKVQNCAAEHKEK 188 (315)
Q Consensus 127 aArkSLe~-m-----------CSSLGKEKeIMA~E-----laRKv~ELnemEeli~DlkAQN~~Ll~K~q~~a~e~k~~ 188 (315)
-+|+++|. | .....||- +|++. -.-+++-..=+...|..|..|++.+=+-+...+...+++
T Consensus 78 e~Rk~IE~~MErFK~vEkesKtKafSkeG-L~~~~k~dp~e~ek~e~~~wl~~~Id~L~~QiE~~E~E~E~L~~~~kKk 155 (233)
T PF04065_consen 78 ENRKLIEEQMERFKVVEKESKTKAFSKEG-LMAASKLDPKEKEKEEARDWLKDSIDELNRQIEQLEAEIESLSSQKKKK 155 (233)
T ss_pred HHHHHHHHHHHHHHHHHHHhcccccchhh-hhcccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Confidence 45666653 1 12233332 23322 233455556677889999999999988888777744443
No 113
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=39.38 E-value=1.1e+02 Score=32.59 Aligned_cols=43 Identities=21% Similarity=0.309 Sum_probs=19.1
Q ss_pred HHhhHHHHHHHHhhhhhhHHHHHHhHHHHHHhHHHHHHHHHHH
Q 021279 202 QERNKALSEHLLKSLDGYRSLKKKYKYVKEENTAMRATMEELG 244 (315)
Q Consensus 202 q~RNkaLSeqLlKSiDgyRSlKrkyk~~qeEN~~i~~tme~~~ 244 (315)
..|-+++-+++-+-=---++|++.+...+.|+-.+..-|+++.
T Consensus 421 ~~~i~~~~~~ve~l~~e~~~L~~~~ee~k~eie~L~~~l~~~~ 463 (652)
T COG2433 421 EKRIKKLEETVERLEEENSELKRELEELKREIEKLESELERFR 463 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444333333334445555555555544444444443
No 114
>PRK13266 Thf1-like protein; Reviewed
Probab=39.02 E-value=2.8e+02 Score=25.93 Aligned_cols=99 Identities=26% Similarity=0.347 Sum_probs=53.9
Q ss_pred HHHHHhhcchhhhHh---HHHHHHHhhhhhhHHHHHHHHHHh----hHHHHHHHHHhHHhhhhh--c-----------cc
Q 021279 132 LEVLCSSLGKEKEIM---AGELARKVHELNEMEELINDFKAQ----NASLLAKVQNCAAEHKEK--K-----------CS 191 (315)
Q Consensus 132 Le~mCSSLGKEKeIM---A~ElaRKv~ELnemEeli~DlkAQ----N~~Ll~K~q~~a~e~k~~--~-----------~s 191 (315)
++.+|+|+|-.-+-. |..+.--+..++ .+++++-|..+ .+.|++.++..+...+-+ + .+
T Consensus 77 F~Alc~a~~~dp~~~r~dA~~l~~~a~~~s-~~~i~~~l~~~~~~~~~~l~~~l~~ia~~~~f~YSRl~AIGL~~LLe~a 155 (225)
T PRK13266 77 FNALCQAVGFDPEQLRQDAERLLELAKGKS-LKEILSWLTQKALGEPGGLLATLLAIANNSKFKYSRLFAIGLYTLLEEA 155 (225)
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHhcCC-HHHHHHHHhccccccchhHHHHHHHHhcCCCCchHHHHHHHHHHHHHhc
Confidence 567899998765433 333333333332 45666666644 233666666665432211 0 11
Q ss_pred ccccccch-hhHHhhHHHH-------HHHHhhhhhhHHHHHHhHHHHH
Q 021279 192 AGEIQGNA-ALQERNKALS-------EHLLKSLDGYRSLKKKYKYVKE 231 (315)
Q Consensus 192 ~~e~~gN~-aLq~RNkaLS-------eqLlKSiDgyRSlKrkyk~~qe 231 (315)
+++...+. .+...-..|+ +.+.|-||=|||.--|...++|
T Consensus 156 ~~~~~~d~~~~~~~l~~l~~~L~ls~~kv~KDL~lYrsnLeKm~Qa~e 203 (225)
T PRK13266 156 QPDLVKDEEKLNEALKDISEGLGLSKEKVEKDLDLYRSNLEKMEQALE 203 (225)
T ss_pred CcccccCHHHHHHHHHHHHHHcCCCHHHHHhhHHHHHhHHHHHHHHHH
Confidence 22222222 3333334443 4678999999999999887664
No 115
>TIGR03545 conserved hypothetical protein TIGR03545. This model represents a relatively rare but broadly distributed uncharacterized protein family, distributed in 1-2 percent of bacterial genomes, all of which have outer membranes. In many of these genomes, it is part of a two-gene pair.
Probab=38.66 E-value=2.3e+02 Score=29.09 Aligned_cols=106 Identities=12% Similarity=0.258 Sum_probs=0.0
Q ss_pred hhhhHHHHHHHHHHhhHHHHHHHHHhHHhhhhhcccccccccchhhHHhhHHHHHHHHhhhhhhHHHHHHhHHHHHHh--
Q 021279 156 ELNEMEELINDFKAQNASLLAKVQNCAAEHKEKKCSAGEIQGNAALQERNKALSEHLLKSLDGYRSLKKKYKYVKEEN-- 233 (315)
Q Consensus 156 ELnemEeli~DlkAQN~~Ll~K~q~~a~e~k~~~~s~~e~~gN~aLq~RNkaLSeqLlKSiDgyRSlKrkyk~~qeEN-- 233 (315)
.|....|++..-.=|+....+++++...++. .+-++..++|= +=+-+-++|.+|+.+++.|
T Consensus 147 ~lp~~~eil~~~~L~T~~~~~~~~~~~k~~~----------------~~w~~~~~~Lp-~~~~~~~yk~~v~~i~~~~ik 209 (555)
T TIGR03545 147 QLPDPRALLKGEDLKTVETAEEIEKSLKAMQ----------------QKWKKRKKDLP-NKQDLEEYKKRLEAIKKKDIK 209 (555)
T ss_pred cCCCHHHHhccCCCCcHHHHHHHHHHHHHHH----------------HHHHHHHHhcC-CchhHHHHHHHHHHHHhccCC
Q ss_pred -----HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccccccHHHHHHHHHhh
Q 021279 234 -----TAMRATMEELGKKVEAGIDQILGFRQRIATKEEQEVDIEEEITALEGM 281 (315)
Q Consensus 234 -----~~i~~tme~~~~~V~aG~~~i~~fr~R~~~~~eq~~dIeeEisaLe~m 281 (315)
.++-..++++..+..+-.++|++|++.+-...++ +...+.+|+.+
T Consensus 210 ~p~~i~~~~~e~d~lk~e~~~~~~~i~~~~~~l~~~~~~---~~~~~~~lk~a 259 (555)
T TIGR03545 210 NPLELQKIKEEFDKLKKEGKADKQKIKSAKNDLQNDKKQ---LKADLAELKKA 259 (555)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH---HHHHHHHHHhc
No 116
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=37.96 E-value=6.6e+02 Score=28.65 Aligned_cols=53 Identities=11% Similarity=0.205 Sum_probs=34.7
Q ss_pred hhhHHhhHHHHHHHHhhhhhhHHHHHHhHHHHHHhHHHHHHHHHHHHHHHHHH
Q 021279 199 AALQERNKALSEHLLKSLDGYRSLKKKYKYVKEENTAMRATMEELGKKVEAGI 251 (315)
Q Consensus 199 ~aLq~RNkaLSeqLlKSiDgyRSlKrkyk~~qeEN~~i~~tme~~~~~V~aG~ 251 (315)
.-.|+|-+.|.+.+-+-.---+++..+|++++..=..+.+.-+....+.....
T Consensus 291 ~~~qek~~~l~~ki~~~~~k~~~~r~k~teiea~i~~~~~e~~~~d~Ei~~~r 343 (1074)
T KOG0250|consen 291 KKKQEKVDTLQEKIEEKQGKIEEARQKLTEIEAKIGELKDEVDAQDEEIEEAR 343 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhHHHHHHH
Confidence 45688888888888777777777777777777665555554444444443333
No 117
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=37.95 E-value=5e+02 Score=27.27 Aligned_cols=31 Identities=23% Similarity=0.416 Sum_probs=22.4
Q ss_pred HHHHHhHHHHHHhHHHHHHHHHHHHHHHHHH
Q 021279 221 SLKKKYKYVKEENTAMRATMEELGKKVEAGI 251 (315)
Q Consensus 221 SlKrkyk~~qeEN~~i~~tme~~~~~V~aG~ 251 (315)
.|--..++++.||.+|+..|..+...+++-+
T Consensus 166 ~le~e~~~Lk~en~rl~~~l~~~r~~ld~Et 196 (546)
T KOG0977|consen 166 ALEDELKRLKAENSRLREELARARKQLDDET 196 (546)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Confidence 3444556788889999999888887666544
No 118
>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=37.74 E-value=85 Score=22.47 Aligned_cols=32 Identities=28% Similarity=0.488 Sum_probs=26.2
Q ss_pred hhHHHHHHhHHHHHHhHHHHHHHHHHHHHHHH
Q 021279 218 GYRSLKKKYKYVKEENTAMRATMEELGKKVEA 249 (315)
Q Consensus 218 gyRSlKrkyk~~qeEN~~i~~tme~~~~~V~a 249 (315)
-|..||+.|..++.+|.++..--+.+-.+|..
T Consensus 6 Dy~~LK~~yd~Lk~~~~~L~~E~~~L~aev~~ 37 (45)
T PF02183_consen 6 DYDALKASYDSLKAEYDSLKKENEKLRAEVQE 37 (45)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 48999999999999999988777666666543
No 119
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=37.72 E-value=6.2e+02 Score=28.27 Aligned_cols=88 Identities=24% Similarity=0.293 Sum_probs=44.2
Q ss_pred hhhHHhhHHHHHHHHhhhhhhHHHHHHhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhh-------hhhccccccH
Q 021279 199 AALQERNKALSEHLLKSLDGYRSLKKKYKYVKEENTAMRATMEELGKKVEAGIDQILGFRQRI-------ATKEEQEVDI 271 (315)
Q Consensus 199 ~aLq~RNkaLSeqLlKSiDgyRSlKrkyk~~qeEN~~i~~tme~~~~~V~aG~~~i~~fr~R~-------~~~~eq~~dI 271 (315)
++|+.||.+ +..++||-|+ |.|.+|+.=++-.++-... =..|+..+|+-+ ++..++ .
T Consensus 547 ~~le~~~~a----~qat~d~a~~------Dlqk~nrlkQdear~~~~~---lvqqv~dLR~~L~~~Eq~aarrEd~---~ 610 (961)
T KOG4673|consen 547 AALEAQALA----EQATNDEARS------DLQKENRLKQDEARERESM---LVQQVEDLRQTLSKKEQQAARREDM---F 610 (961)
T ss_pred HHHHHHHHH----HHHhhhhhhh------hHHHHhhhhhhHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHH---H
Confidence 345555443 3467888777 5555555443322222111 123333444433 333333 6
Q ss_pred HHHHHHHHhhhhhhcchhhhhcccccccCCC
Q 021279 272 EEEITALEGMFDSFNMKIKKHIQNKSDCGKP 302 (315)
Q Consensus 272 eeEisaLe~mfe~~~mKi~kh~qkKs~c~kp 302 (315)
..||-.|-+=++.-+...---+|.-++-.+|
T Consensus 611 R~Ei~~LqrRlqaaE~R~eel~q~v~~TTrP 641 (961)
T KOG4673|consen 611 RGEIEDLQRRLQAAERRCEELIQQVPETTRP 641 (961)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccccccH
Confidence 6788888777776665555555544444443
No 120
>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed. It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].
Probab=37.61 E-value=3.6e+02 Score=25.51 Aligned_cols=110 Identities=26% Similarity=0.359 Sum_probs=81.9
Q ss_pred CchHHHHHHHHHhHHHHHHHHHHHH-------HhhcchhhhHhHHHHHHHhhhhhhHHHHHHHHHHhhHHHHHHHHHhHH
Q 021279 111 ITDDKEKLRRQLSASLAARKSLEVL-------CSSLGKEKEIMAGELARKVHELNEMEELINDFKAQNASLLAKVQNCAA 183 (315)
Q Consensus 111 ~~dekeklkkeL~ASlaArkSLe~m-------CSSLGKEKeIMA~ElaRKv~ELnemEeli~DlkAQN~~Ll~K~q~~a~ 183 (315)
|.+..+.|-+.+...+.-.+.++-- ...|.+|++-+.+|+.+-+.--.-+|.|-..|..||.+|.+.-...+.
T Consensus 20 ~eeK~~~L~kk~~ell~e~k~~~k~~~~~~Kk~~~l~kek~~l~~E~~k~~~~k~KLE~LCRELQk~Nk~lkeE~~~~~~ 99 (309)
T PF09728_consen 20 PEEKLEALCKKYAELLEEMKRLQKQLKKLQKKQEQLQKEKDQLQSELSKAILAKSKLESLCRELQKQNKKLKEESKRRAR 99 (309)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3555677777777777766665543 456788999999999999999999999999999999999876665555
Q ss_pred hhhhhcccccc----------------cccchhhHHhhHHHHHHHHhhhhhhH
Q 021279 184 EHKEKKCSAGE----------------IQGNAALQERNKALSEHLLKSLDGYR 220 (315)
Q Consensus 184 e~k~~~~s~~e----------------~~gN~aLq~RNkaLSeqLlKSiDgyR 220 (315)
+...++..-.+ ..-|..+.+-|..|.+.|-.-++-|-
T Consensus 100 eee~kR~el~~kFq~~L~dIq~~~ee~~~~~~k~~~eN~~L~eKlK~l~eQye 152 (309)
T PF09728_consen 100 EEEEKRKELSEKFQATLKDIQAQMEEQSERNIKLREENEELREKLKSLIEQYE 152 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 44433321111 14567788889999999888888886
No 121
>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4.
Probab=36.71 E-value=3.5e+02 Score=26.07 Aligned_cols=53 Identities=23% Similarity=0.341 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhccccccHHHHHHHHHhhhhhhcchhhhh
Q 021279 240 MEELGKKVEAGIDQILGFRQRIATKEEQEVDIEEEITALEGMFDSFNMKIKKH 292 (315)
Q Consensus 240 me~~~~~V~aG~~~i~~fr~R~~~~~eq~~dIeeEisaLe~mfe~~~mKi~kh 292 (315)
|+...+++..--..+..+++||.-+.+.-.+++.|=+.|..-+..+.-|+.|.
T Consensus 209 Le~~~EeL~~~Eke~~e~~~~i~e~~~rl~~l~~~~~~l~k~~~~~~sKV~kf 261 (269)
T PF05278_consen 209 LEELEEELKQKEKEVKEIKERITEMKGRLGELEMESTRLSKTIKSIKSKVEKF 261 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33344444444444555555555555555578888888888888888888776
No 122
>PF15260 FAM219A: Protein family FAM219A
Probab=36.40 E-value=19 Score=31.40 Aligned_cols=16 Identities=63% Similarity=1.016 Sum_probs=14.0
Q ss_pred HhhHHHHHHHHhhhhhhH
Q 021279 203 ERNKALSEHLLKSLDGYR 220 (315)
Q Consensus 203 ~RNkaLSeqLlKSiDgyR 220 (315)
.=|+.|+.|||| ||||
T Consensus 76 q~~q~l~~QLlk--DGy~ 91 (125)
T PF15260_consen 76 QVNQDLSQQLLK--DGYR 91 (125)
T ss_pred HHhHHHHHHHHh--cccc
Confidence 458999999998 8997
No 123
>KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton]
Probab=36.07 E-value=5.5e+02 Score=27.19 Aligned_cols=26 Identities=31% Similarity=0.424 Sum_probs=13.8
Q ss_pred cHHHHHHHH-Hhhhhhhcchhhhhccc
Q 021279 270 DIEEEITAL-EGMFDSFNMKIKKHIQN 295 (315)
Q Consensus 270 dIeeEisaL-e~mfe~~~mKi~kh~qk 295 (315)
|+=+||+.| .-.|||++.-|--|.|-
T Consensus 376 ~VF~e~~~lv~S~lDGYnVCIFAYGQT 402 (670)
T KOG0239|consen 376 DVFEEVSPLVQSALDGYNVCIFAYGQT 402 (670)
T ss_pred HHHHHHHHHHHHHhcCcceeEEEeccc
Confidence 344555543 34566666666555554
No 124
>PF00901 Orbi_VP5: Orbivirus outer capsid protein VP5; InterPro: IPR000145 The orbivirus VP5 protein is one of the two proteins (with VP2) which make up the virus particle outer capsid. Cryoelectron microscopy indicates that VP5 is a trimer suggesting that there are 360 copies of VP5 per virion [].; GO: 0005198 structural molecule activity, 0019028 viral capsid
Probab=35.75 E-value=5.4e+02 Score=27.03 Aligned_cols=85 Identities=25% Similarity=0.281 Sum_probs=43.8
Q ss_pred HHHHHhhhhhhHHHHHHHHHHhhHHHHHHHHHhHHhhhhhcccccccccchhhHHhhHHHHHHHHhhhhhhHHHHHHhHH
Q 021279 149 ELARKVHELNEMEELINDFKAQNASLLAKVQNCAAEHKEKKCSAGEIQGNAALQERNKALSEHLLKSLDGYRSLKKKYKY 228 (315)
Q Consensus 149 ElaRKv~ELnemEeli~DlkAQN~~Ll~K~q~~a~e~k~~~~s~~e~~gN~aLq~RNkaLSeqLlKSiDgyRSlKrkyk~ 228 (315)
.+++|+.||.+.+.=---+-..|+...+|+-+-..+-.+--+.....+ ++- ..=-+-|-|+++||.-+
T Consensus 88 ~l~~Kl~eLE~e~k~d~v~~khn~~I~~k~g~~L~~v~~~~~~~~~~~-----~~e-~~q~~~LekAl~~~~~i------ 155 (508)
T PF00901_consen 88 GLQRKLKELEDEQKEDEVREKHNKKIIEKFGNDLEKVYKFMKGQEKVE-----EEE-ENQIEILEKALKSYGKI------ 155 (508)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhh-----hhH-HHHHHHHHHHHHHHHHH------
Confidence 567888888877765555666777766665544332221111011110 010 11135677888888643
Q ss_pred HHHHhHHHHHHHHHHHH
Q 021279 229 VKEENTAMRATMEELGK 245 (315)
Q Consensus 229 ~qeEN~~i~~tme~~~~ 245 (315)
+++||.+|...-.-+..
T Consensus 156 ~~~E~~~l~~L~~AL~k 172 (508)
T PF00901_consen 156 VKEENKQLDRLARALQK 172 (508)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 55566555544443333
No 125
>TIGR00219 mreC rod shape-determining protein MreC. MreC (murein formation C) is involved in the rod shape determination in E. coli, and more generally in cell shape determination of bacteria whether or not they are rod-shaped. Cells defective in MreC are round. Species with MreC include many of the Proteobacteria, Gram-positives, and spirochetes.
Probab=35.73 E-value=71 Score=29.59 Aligned_cols=16 Identities=25% Similarity=0.389 Sum_probs=9.9
Q ss_pred HhHHHHHHhHHHHHHH
Q 021279 225 KYKYVKEENTAMRATM 240 (315)
Q Consensus 225 kyk~~qeEN~~i~~tm 240 (315)
.+.+++.||.+++.-|
T Consensus 92 ~~~~l~~EN~rLr~LL 107 (283)
T TIGR00219 92 LTQNLKQENVRLRELL 107 (283)
T ss_pred HHHHHHHHHHHHHHHh
Confidence 3444677777776644
No 126
>KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton]
Probab=35.51 E-value=5.6e+02 Score=27.13 Aligned_cols=93 Identities=19% Similarity=0.246 Sum_probs=49.0
Q ss_pred cchhhhHhHHHHHHHhhhhhhH----HHHHHHHH---HhhHHHHHHHHHhHHhhhhhcccccccccc-hhhHHhhHHHHH
Q 021279 139 LGKEKEIMAGELARKVHELNEM----EELINDFK---AQNASLLAKVQNCAAEHKEKKCSAGEIQGN-AALQERNKALSE 210 (315)
Q Consensus 139 LGKEKeIMA~ElaRKv~ELnem----Eeli~Dlk---AQN~~Ll~K~q~~a~e~k~~~~s~~e~~gN-~aLq~RNkaLSe 210 (315)
.+|+++.+..+++...++|... ++.+..|+ .++..|.+.+.+.+.-.... .+.+++ .....++..|..
T Consensus 173 ~~k~~~~~~~~~~~~~~~l~~v~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~----~~l~~~~~~~~~~i~~l~~ 248 (670)
T KOG0239|consen 173 ALKESLKLESDLGDLVTELEHVTNSISELESVLKSAQEERRVLADSLGNYADLRRNI----KPLEGLESTIKKKIQALQQ 248 (670)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhhHHHhh----hhhhhhhhHHHHHHHHHHH
Confidence 4678888888888888877443 33333333 34555555555333322111 122222 334455677777
Q ss_pred HHHhhhhhhHHHHHHhHHHHHHhHH
Q 021279 211 HLLKSLDGYRSLKKKYKYVKEENTA 235 (315)
Q Consensus 211 qLlKSiDgyRSlKrkyk~~qeEN~~ 235 (315)
+|..---.+.+|+...+..++++..
T Consensus 249 ~l~~l~~~~~~l~~~~~~~~~~~~~ 273 (670)
T KOG0239|consen 249 ELEELKAELKELNDQVSLLTREVQE 273 (670)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7776555555555554444444433
No 127
>PF04751 DUF615: Protein of unknown function (DUF615); InterPro: IPR006839 The proteins in this entry are functionally uncharacterised. The entry contains the Escherichia coli (strain K12) protein YjgA (P0A8X0 from SWISSPROT), which has been shown to comigrate with the mature 50S ribosome subunit. Therefore it either represents a novel ribosome-associated protein or it is associated with a different oligomeric complex that comigrates with ribosomal particles [].; PDB: 2P0T_A.
Probab=34.41 E-value=2e+02 Score=25.05 Aligned_cols=59 Identities=24% Similarity=0.500 Sum_probs=37.2
Q ss_pred HHHHHHHhhhhhhHHH------HHHhHHHH-----HHhHHHHHHHHHHHHHHH---HHHHHHHHHHHhhhhhc
Q 021279 207 ALSEHLLKSLDGYRSL------KKKYKYVK-----EENTAMRATMEELGKKVE---AGIDQILGFRQRIATKE 265 (315)
Q Consensus 207 aLSeqLlKSiDgyRSl------Krkyk~~q-----eEN~~i~~tme~~~~~V~---aG~~~i~~fr~R~~~~~ 265 (315)
.|+|.|+..|.-++.+ +|.++++= ..-..|+++|+.+...-. +-+.++..+|.|+...+
T Consensus 37 pL~e~l~~Ai~~a~ri~~~~arrRQ~qyIGKLmR~~d~e~I~~al~~~~~~~~~~~~~~h~lE~wRdrLi~~~ 109 (157)
T PF04751_consen 37 PLPEELRDAIMEARRITSHEARRRQLQYIGKLMREEDPEAIRAALDALKNKSQQETARFHRLERWRDRLIADD 109 (157)
T ss_dssp ---HHHHHHHHHGGG--SHHHHHHHHHHHHHHGGGS-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-
T ss_pred CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHhCC
Confidence 4677777777777766 55565542 244578888887765543 44567999999998866
No 128
>PF13949 ALIX_LYPXL_bnd: ALIX V-shaped domain binding to HIV ; PDB: 2XS1_A 2XS8_A 2R03_A 2R02_A 2OEX_B 2OEV_A 2OJQ_A 2R05_A.
Probab=34.06 E-value=3.3e+02 Score=23.96 Aligned_cols=76 Identities=20% Similarity=0.388 Sum_probs=50.3
Q ss_pred hhhHhHHHHHHHhhhhhhHHHHHHHHHHhhHHHHHHHHHhHHhhhhhcccccccccchhhHHhhHHHHHHHHhhhhhhHH
Q 021279 142 EKEIMAGELARKVHELNEMEELINDFKAQNASLLAKVQNCAAEHKEKKCSAGEIQGNAALQERNKALSEHLLKSLDGYRS 221 (315)
Q Consensus 142 EKeIMA~ElaRKv~ELnemEeli~DlkAQN~~Ll~K~q~~a~e~k~~~~s~~e~~gN~aLq~RNkaLSeqLlKSiDgyRS 221 (315)
+..|+..||.. ....-..|.+-..+.+.||..|+...++-...+ ..+...+.|+..+ ..|..+.+.|..
T Consensus 191 ~~~lf~~eL~k----~~~~~~~i~~~~~~Q~~ll~~i~~~~~~~~~~~------~~~~~~~~r~~~~-~~l~~a~~~y~e 259 (296)
T PF13949_consen 191 FEALFEEELKK----FDPLQNRIQQNLSKQEELLQEIQEANEEFAQSR------KSDQEQKERESAL-QRLEAAYDAYKE 259 (296)
T ss_dssp HHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS--------SHHHHHHHHHH-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh------cccHHHHHHHHHH-HHHHHHHHHHHH
Confidence 55677766654 333445666777778888888888766544222 3344457888777 568889999988
Q ss_pred HHHHhHH
Q 021279 222 LKKKYKY 228 (315)
Q Consensus 222 lKrkyk~ 228 (315)
|+..+..
T Consensus 260 l~~~l~e 266 (296)
T PF13949_consen 260 LSSNLEE 266 (296)
T ss_dssp HHHHHHH
T ss_pred HHHhHHH
Confidence 8877654
No 129
>PF11365 DUF3166: Protein of unknown function (DUF3166); InterPro: IPR021507 This eukaryotic family of proteins has no known function.
Probab=33.66 E-value=2.7e+02 Score=23.11 Aligned_cols=73 Identities=21% Similarity=0.240 Sum_probs=0.0
Q ss_pred hhhhhHHHHHHHHHHhhHHHHHHHHHhHHhhhhhcccccccccc------hhhHHhhHHHHHHHHhhhhhhHHHHHHhHH
Q 021279 155 HELNEMEELINDFKAQNASLLAKVQNCAAEHKEKKCSAGEIQGN------AALQERNKALSEHLLKSLDGYRSLKKKYKY 228 (315)
Q Consensus 155 ~ELnemEeli~DlkAQN~~Ll~K~q~~a~e~k~~~~s~~e~~gN------~aLq~RNkaLSeqLlKSiDgyRSlKrkyk~ 228 (315)
.|..=|--=++++-.||+.|+.-|+.+..+...-...+....|. ++||.+-|..-+|.-- |.+|...
T Consensus 15 EEa~LlRRkl~ele~eN~~l~~EL~kyk~~~g~~d~~~~~~~g~~~~~~~~~l~~eLk~a~~qi~~-------Ls~kv~e 87 (96)
T PF11365_consen 15 EEAELLRRKLSELEDENKQLTEELNKYKSKYGDLDSLAKLSEGGSPSGREAELQEELKLAREQINE-------LSGKVME 87 (96)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccccCCCCCCCccccHHHHHHHHHHHHHHHH-------HhhHHHH
Q ss_pred HHHHhH
Q 021279 229 VKEENT 234 (315)
Q Consensus 229 ~qeEN~ 234 (315)
.|-||+
T Consensus 88 Lq~ENR 93 (96)
T PF11365_consen 88 LQYENR 93 (96)
T ss_pred Hhhccc
No 130
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=33.10 E-value=9.4e+02 Score=28.98 Aligned_cols=160 Identities=21% Similarity=0.264 Sum_probs=82.3
Q ss_pred HHhHHHHHHHHHHHHHhhcchhhhHhHHHHHHHhhhh---------------hhHHHHHHHHHHhhHHHHHHHHHhHHhh
Q 021279 121 QLSASLAARKSLEVLCSSLGKEKEIMAGELARKVHEL---------------NEMEELINDFKAQNASLLAKVQNCAAEH 185 (315)
Q Consensus 121 eL~ASlaArkSLe~mCSSLGKEKeIMA~ElaRKv~EL---------------nemEeli~DlkAQN~~Ll~K~q~~a~e~ 185 (315)
++.+-|-+.+-|--.-.|.--|-++=++|+-|.+.++ .-+.++..-+..+|..+..+|+++-.+-
T Consensus 274 kf~~El~~q~kL~eL~ks~~ee~~~~~~el~~~i~~~~klled~~~~~~e~~d~l~e~~~sl~~~~~~~~k~~~~le~~l 353 (1822)
T KOG4674|consen 274 KFEKELSTQKKLNELWKSKLEELSHEVAELQRAIEELEKLLEDASERNKENTDQLKELEQSLSKLNEKLEKKVSRLEGEL 353 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344445566666666666667777778888877766 2344555556677777777777776532
Q ss_pred hhh--cccccccccchhhHHhhHHHHHHHHhhhhhhHHHHHHhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 021279 186 KEK--KCSAGEIQGNAALQERNKALSEHLLKSLDGYRSLKKKYKYVKEENTAMRATMEELGKKVEAGIDQILGFRQRIAT 263 (315)
Q Consensus 186 k~~--~~s~~e~~gN~aLq~RNkaLSeqLlKSiDgyRSlKrkyk~~qeEN~~i~~tme~~~~~V~aG~~~i~~fr~R~~~ 263 (315)
... ..+. .+.-|..... .|++..+.+.=-+.--+..+|-..|++ |+....++.--.-.+.+|.+ .
T Consensus 354 ~~an~~~~~-~~~~~~~s~~--~a~~s~~~~~~~sLtk~ys~~~~~qqq-------le~~~lele~~~~~l~s~~e---e 420 (1822)
T KOG4674|consen 354 EDANDSLSA-TGESSMVSEK--AALASSLIRPGSSLTKLYSKYSKLQQQ-------LESLKLELERLQNILSSFKE---E 420 (1822)
T ss_pred HhhhhhHHh-hcccchhhhH--HHHHHhhcccchhHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHH---H
Confidence 211 1111 1122222222 333333333222222223334444443 33333333333333556666 4
Q ss_pred hccccccHHHHHHHHHhhhhhhcchhhhhc
Q 021279 264 KEEQEVDIEEEITALEGMFDSFNMKIKKHI 293 (315)
Q Consensus 264 ~~eq~~dIeeEisaLe~mfe~~~mKi~kh~ 293 (315)
.+..+|=+++.-+.||||=.-..-...+|.
T Consensus 421 v~~~~p~lk~qr~~~e~~~~~~~~l~~el~ 450 (1822)
T KOG4674|consen 421 VKQKAPILKEQRSELERMQETKAELSEELD 450 (1822)
T ss_pred HHhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666688888888888665554444443
No 131
>PLN02678 seryl-tRNA synthetase
Probab=32.62 E-value=2.8e+02 Score=27.86 Aligned_cols=89 Identities=10% Similarity=0.189 Sum_probs=46.2
Q ss_pred HHHHHhhhhhhHHHHHHhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccccccHHHHHHHHHhhhhhhcch
Q 021279 209 SEHLLKSLDGYRSLKKKYKYVKEENTAMRATMEELGKKVEAGIDQILGFRQRIATKEEQEVDIEEEITALEGMFDSFNMK 288 (315)
Q Consensus 209 SeqLlKSiDgyRSlKrkyk~~qeEN~~i~~tme~~~~~V~aG~~~i~~fr~R~~~~~eq~~dIeeEisaLe~mfe~~~mK 288 (315)
-++|++--.-||++..++..++.|=..+-..+..+.. .+ +....+.+++. .|.+||.+||.-.+.+.-+
T Consensus 32 id~il~ld~~~r~l~~~~e~lr~erN~~sk~I~~~k~---~~-~~~~~l~~~~~-------~Lk~ei~~le~~~~~~~~~ 100 (448)
T PLN02678 32 VDEVIALDKEWRQRQFELDSLRKEFNKLNKEVAKLKI---AK-EDATELIAETK-------ELKKEITEKEAEVQEAKAA 100 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh---CC-CcHHHHHHHHH-------HHHHHHHHHHHHHHHHHHH
Confidence 3566665566777777777666665555444432110 01 11222222111 3556666666666666666
Q ss_pred hhhhcccccccCCCCccccc
Q 021279 289 IKKHIQNKSDCGKPKAPINA 308 (315)
Q Consensus 289 i~kh~qkKs~c~kpk~~i~a 308 (315)
+...-..=....-|.||+..
T Consensus 101 l~~~~~~iPNi~~~~VP~G~ 120 (448)
T PLN02678 101 LDAKLKTIGNLVHDSVPVSN 120 (448)
T ss_pred HHHHHHhCCCCCCccCCCCC
Confidence 55555555555666666543
No 132
>COG5466 Predicted small metal-binding protein [Function unknown]
Probab=32.57 E-value=48 Score=25.79 Aligned_cols=35 Identities=43% Similarity=0.677 Sum_probs=21.3
Q ss_pred HHhhcch----------hhhHh--HHHHHHHhhhhhhH-HHHHHHHHH
Q 021279 135 LCSSLGK----------EKEIM--AGELARKVHELNEM-EELINDFKA 169 (315)
Q Consensus 135 mCSSLGK----------EKeIM--A~ElaRKv~ELnem-Eeli~DlkA 169 (315)
-|||||- |-|+| ..+=||++|-++++ |++|+-+|.
T Consensus 7 ~C~slg~~C~f~~~a~~~~Ev~~~iv~H~k~~Hg~t~I~ed~in~Ik~ 54 (59)
T COG5466 7 KCGSLGMGCGFEARADSEAEVMRRIVEHAKEAHGETEIREDMINKIKS 54 (59)
T ss_pred EccccCCCCcceeccCcHHHHHHHHHHHHHHhcCCccccHHHHHHHHH
Confidence 3888873 34444 23557778877776 455665554
No 133
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=32.16 E-value=7.9e+02 Score=27.80 Aligned_cols=48 Identities=15% Similarity=0.198 Sum_probs=33.3
Q ss_pred hhHHhhHHHHHHHHhhhhhhHHHHHHhHHHHHHhHHHHHHHHHHHHHH
Q 021279 200 ALQERNKALSEHLLKSLDGYRSLKKKYKYVKEENTAMRATMEELGKKV 247 (315)
Q Consensus 200 aLq~RNkaLSeqLlKSiDgyRSlKrkyk~~qeEN~~i~~tme~~~~~V 247 (315)
.+.+.|.+||+.|...-+.--.|-.+...++..=..++.|...+.+-+
T Consensus 262 ~~~~~N~~Ls~~L~~~t~~~n~l~~~~~~~~~~l~~~~q~~~~i~eQi 309 (1109)
T PRK10929 262 AQFKINRELSQALNQQAQRMDLIASQQRQAASQTLQVRQALNTLREQS 309 (1109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344789999999999888776676666666555555666665555444
No 134
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=31.93 E-value=6.9e+02 Score=27.09 Aligned_cols=153 Identities=20% Similarity=0.214 Sum_probs=80.8
Q ss_pred hHHHHHHHHHhHHHHHHHHHHHHHhhcchhhhHhHHHHHHHhhhhhh----------------------------HHHHH
Q 021279 113 DDKEKLRRQLSASLAARKSLEVLCSSLGKEKEIMAGELARKVHELNE----------------------------MEELI 164 (315)
Q Consensus 113 dekeklkkeL~ASlaArkSLe~mCSSLGKEKeIMA~ElaRKv~ELne----------------------------mEeli 164 (315)
++...++.+|.--+.+-+.|..---+.|-.-|=|-..+.+.++||.+ |++.|
T Consensus 433 ~~~~~~~e~Lqk~~~~~k~ll~e~~t~gsA~ed~Qeqn~kL~~el~ekdd~nfklm~e~~~~~q~~k~L~~ek~~l~~~i 512 (698)
T KOG0978|consen 433 RQVEELSEELQKKEKNFKCLLSEMETIGSAFEDMQEQNQKLLQELREKDDKNFKLMSERIKANQKHKLLREEKSKLEEQI 512 (698)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445666666666666655555566777777777777777766654 56666
Q ss_pred HHHHHhhHHHHHHHHHhHHhhhhhcccccccccchhhHHhhHHHHH---HHHhhhhhhHH----HHHHhHHHHHHhHHHH
Q 021279 165 NDFKAQNASLLAKVQNCAAEHKEKKCSAGEIQGNAALQERNKALSE---HLLKSLDGYRS----LKKKYKYVKEENTAMR 237 (315)
Q Consensus 165 ~DlkAQN~~Ll~K~q~~a~e~k~~~~s~~e~~gN~aLq~RNkaLSe---qLlKSiDgyRS----lKrkyk~~qeEN~~i~ 237 (315)
.+++++++++..++...-.... . |+.+-.-|+. ++.-+|--|.. +++...++|.+=..-.
T Consensus 513 ~~l~~~~~~~~~~i~~leeq~~--~-----------lt~~~~~l~~el~~~~~~le~~kk~~~e~~~~~~~Lq~~~ek~~ 579 (698)
T KOG0978|consen 513 LTLKASVDKLELKIGKLEEQER--G-----------LTSNESKLIKELTTLTQSLEMLKKKAQEAKQSLEDLQIELEKSE 579 (698)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH--H-----------hhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7777777776666654433111 1 1111111111 11122222221 3444556666666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhccccccHHHHHHHHHhhhhhh
Q 021279 238 ATMEELGKKVEAGIDQILGFRQRIATKEEQEVDIEEEITALEGMFDSF 285 (315)
Q Consensus 238 ~tme~~~~~V~aG~~~i~~fr~R~~~~~eq~~dIeeEisaLe~mfe~~ 285 (315)
..|+++...++.--.-|-.|++-.- -|+||++-|-.-++..
T Consensus 580 ~~le~i~~~~~e~~~ele~~~~k~~-------rleEE~e~L~~kle~~ 620 (698)
T KOG0978|consen 580 AKLEQIQEQYAELELELEIEKFKRK-------RLEEELERLKRKLERL 620 (698)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHh
Confidence 7778777777665554444444111 2555555555444433
No 135
>PF14728 PHTB1_C: PTHB1 C-terminus
Probab=31.69 E-value=1.9e+02 Score=28.30 Aligned_cols=35 Identities=26% Similarity=0.301 Sum_probs=25.1
Q ss_pred ccccccchhhHHhhHHHHHHHHhhhhhhHHHHHHhHHHHHHhH
Q 021279 192 AGEIQGNAALQERNKALSEHLLKSLDGYRSLKKKYKYVKEENT 234 (315)
Q Consensus 192 ~~e~~gN~aLq~RNkaLSeqLlKSiDgyRSlKrkyk~~qeEN~ 234 (315)
.+...|..+||+ ++..||.|=.++.+++..+++-.
T Consensus 190 ~~~~~~~lPl~~--------~~~~id~H~~lr~~~~~~~~~L~ 224 (377)
T PF14728_consen 190 KISFSGPLPLQE--------YFEIIDQHFELRQELKELEEELD 224 (377)
T ss_pred EEecCCCCcHHH--------HHHHHHHHHHHHHHHHHHHHHHH
Confidence 356678888775 67778888888888777766543
No 136
>PF06103 DUF948: Bacterial protein of unknown function (DUF948); InterPro: IPR009293 This family consists of bacterial sequences several of which are thought to be general stress proteins.
Probab=30.74 E-value=2.4e+02 Score=21.31 Aligned_cols=58 Identities=21% Similarity=0.375 Sum_probs=29.0
Q ss_pred hHHHHHHhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccccccHHHHHHHHHhhhhhhc
Q 021279 219 YRSLKKKYKYVKEENTAMRATMEELGKKVEAGIDQILGFRQRIATKEEQEVDIEEEITALEGMFDSFN 286 (315)
Q Consensus 219 yRSlKrkyk~~qeEN~~i~~tme~~~~~V~aG~~~i~~fr~R~~~~~eq~~dIeeEisaLe~mfe~~~ 286 (315)
+++|++.++.+.. |++.+..+++--..++...=. ..++.--|+.+....+..+|+.++
T Consensus 21 l~~l~~~l~~~~~-------ti~~l~~~~~~i~~e~~~ll~---~~n~l~~dv~~k~~~v~~~~~~v~ 78 (90)
T PF06103_consen 21 LKKLKKTLDEVNK-------TIDTLQEQVDPITKEINDLLH---NTNELLEDVNEKLEKVDPVFEAVA 78 (90)
T ss_pred HHHHHHHHHHHHH-------HHHHHHHhHHHHHHHHHHHHH---HHHHHHHHHHHHHHhHHHHHHHHH
Confidence 3455555555444 444444444444444333322 333333367777777777776553
No 137
>PF03980 Nnf1: Nnf1 ; InterPro: IPR007128 NNF1 is an essential yeast gene required for proper spindle orientation, nucleolar and nuclear envelope structure and mRNA export [].
Probab=30.55 E-value=1.4e+02 Score=23.32 Aligned_cols=32 Identities=16% Similarity=0.312 Sum_probs=25.0
Q ss_pred HHHhhhhhhHHHHHHHHHHhhHHHHHHHHHhH
Q 021279 151 ARKVHELNEMEELINDFKAQNASLLAKVQNCA 182 (315)
Q Consensus 151 aRKv~ELnemEeli~DlkAQN~~Ll~K~q~~a 182 (315)
.-+..++..+...+..+.++|+.|.+.|+..-
T Consensus 76 ~~~~~~~~~L~~~l~~l~~eN~~L~~~i~~~r 107 (109)
T PF03980_consen 76 PYKKKEREQLNARLQELEEENEALAEEIQEQR 107 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34566777788888899999999999887643
No 138
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=30.26 E-value=2.1e+02 Score=23.61 Aligned_cols=18 Identities=39% Similarity=0.420 Sum_probs=10.4
Q ss_pred cchhhHHhhHHHHHHHHh
Q 021279 197 GNAALQERNKALSEHLLK 214 (315)
Q Consensus 197 gN~aLq~RNkaLSeqLlK 214 (315)
.|+.|+--|..|-+.|-+
T Consensus 37 EN~~L~~EN~~Lr~~l~~ 54 (107)
T PF06156_consen 37 ENARLRIENEHLRERLEE 54 (107)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 456666666666555543
No 139
>PF15254 CCDC14: Coiled-coil domain-containing protein 14
Probab=30.17 E-value=1.8e+02 Score=32.02 Aligned_cols=69 Identities=20% Similarity=0.313 Sum_probs=60.2
Q ss_pred chHHHHHHHHHhHHHHHHHHHHHHHhhcchhhhHhHHHHHHHhhhhhhHHHHHHHHHHhhHHHHHHHHH
Q 021279 112 TDDKEKLRRQLSASLAARKSLEVLCSSLGKEKEIMAGELARKVHELNEMEELINDFKAQNASLLAKVQN 180 (315)
Q Consensus 112 ~dekeklkkeL~ASlaArkSLe~mCSSLGKEKeIMA~ElaRKv~ELnemEeli~DlkAQN~~Ll~K~q~ 180 (315)
..|..|+|-+++..|+--|+++.---.--||..|.--.|-.+=.|++.+.||...|.--.+.||.-|.-
T Consensus 493 d~e~~rik~ev~eal~~~k~~q~kLe~sekEN~iL~itlrQrDaEi~RL~eLtR~LQ~Sma~lL~dls~ 561 (861)
T PF15254_consen 493 DIETTRIKIEVEEALVNVKSLQFKLEASEKENQILGITLRQRDAEIERLRELTRTLQNSMAKLLSDLSV 561 (861)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHhhhhHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccc
Confidence 457788999999999999999988888889999999999999999999999999998888888775543
No 140
>TIGR00514 accC acetyl-CoA carboxylase, biotin carboxylase subunit. This model represents the biotin carboxylase subunit found usually as a component of acetyl-CoA carboxylase. Acetyl-CoA carboxylase is designated EC 6.4.1.2 and this component, biotin carboxylase, has its own designation, EC 6.3.4.14. Homologous domains are found in eukaryotic forms of acetyl-CoA carboxylase and in a number of other carboxylases (e.g. pyruvate carboxylase), but seed members and trusted cutoff are selected so as to exclude these. In some systems, the biotin carboxyl carrier protein and this protein (biotin carboxylase) may be shared by different carboxyltransferases. However, this model is not intended to identify the biotin carboxylase domain of propionyl-coA carboxylase. The model should hit the full length of proteins, except for chloroplast transit peptides in plants. If it hits a domain only of a longer protein, there may be a problem with the identification.
Probab=30.08 E-value=21 Score=33.68 Aligned_cols=25 Identities=12% Similarity=0.409 Sum_probs=21.6
Q ss_pred CccchhhhhhhHHHHHHHHhhhccc
Q 021279 24 EDLSFEGIAANVKLLLKLIQDHTEA 48 (315)
Q Consensus 24 ed~slEGiatNvKLLLKLiQdHnea 48 (315)
.+..++|+.||+.+|..+++++.=.
T Consensus 408 ~~~~i~g~~tn~~~l~~~~~~~~f~ 432 (449)
T TIGR00514 408 SEFIIDGIKTTIPFHQRILEDENFQ 432 (449)
T ss_pred hhcEEeCccCCHHHHHHHhcChhhc
Confidence 5678899999999999999987653
No 141
>PF05823 Gp-FAR-1: Nematode fatty acid retinoid binding protein (Gp-FAR-1); InterPro: IPR008632 Parasitic nematodes produce at least two structurally novel classes of small helix-rich retinol- and fatty-acid-binding proteins that have no counterparts in their plant or animal hosts and thus represent potential targets for new nematicides. Gp-FAR-1 is a member of the nematode-specific fatty-acid- and retinol-binding (FAR) family of proteins but localises to the surface of the organism, placing it in a strategic position for interaction with the host. Gp-FAR-1 functions as a broad-spectrum retinol- and fatty-acid-binding protein, and it is thought that it is involved in the evasion of primary host plant defence systems [].; GO: 0008289 lipid binding; PDB: 2W9Y_A.
Probab=30.07 E-value=1.2e+02 Score=26.04 Aligned_cols=80 Identities=25% Similarity=0.321 Sum_probs=48.5
Q ss_pred HHHHHHHhhcchhhhHhHHHHHHHhhhhhhHHHHHHHHHHhhHHHHHHHHHhHHhhhhhcccccccccchhhHHhhHHHH
Q 021279 130 KSLEVLCSSLGKEKEIMAGELARKVHELNEMEELINDFKAQNASLLAKVQNCAAEHKEKKCSAGEIQGNAALQERNKALS 209 (315)
Q Consensus 130 kSLe~mCSSLGKEKeIMA~ElaRKv~ELnemEeli~DlkAQN~~Ll~K~q~~a~e~k~~~~s~~e~~gN~aLq~RNkaLS 209 (315)
..++..++=-..||.++- |++.+.+.-+-.+|+|..||.-+..|-+|+...-..-+.+ + ..|..=-+++-
T Consensus 13 ev~~~~~~Lt~eeK~~lk-ev~~~~~~~~~~de~i~~LK~ksP~L~~k~~~l~~~~k~k----i-----~~L~peak~Fv 82 (154)
T PF05823_consen 13 EVVEFYKNLTPEEKAELK-EVAKNYAKFKNEDEMIAALKEKSPSLYEKAEKLRDKLKKK----I-----DKLSPEAKAFV 82 (154)
T ss_dssp HHHHHHHH--TTTHHHHH-HHHTT-------TTHHHHHHHH-HHHHHHHHHHHHHHHHT----T-----TT--HHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHH-HHHHHccccCCHHHHHHHHHHhCHHHHHHHHHHHHHHHHH----H-----HcCCHHHHHHH
Confidence 356788888899999987 9999999888889999999999999999988775533321 1 23444444554
Q ss_pred HHHHhhhhhhHHH
Q 021279 210 EHLLKSLDGYRSL 222 (315)
Q Consensus 210 eqLlKSiDgyRSl 222 (315)
..| |+.+|+|
T Consensus 83 ~~l---i~~~~~l 92 (154)
T PF05823_consen 83 KEL---IAKARSL 92 (154)
T ss_dssp HHH---HHHHHHH
T ss_pred HHH---HHHHHHH
Confidence 444 4556655
No 142
>TIGR02284 conserved hypothetical protein. Members of this protein family are found mostly in the Proteobacteria, although one member is found in the the marine planctomycete Pirellula sp. strain 1. The function is unknown.
Probab=29.52 E-value=3.3e+02 Score=22.59 Aligned_cols=98 Identities=21% Similarity=0.257 Sum_probs=63.9
Q ss_pred hHHHHHHHHHHhhHHHHHHHHHhHHhhhhhcccccccccchhhHHhh----HHHH---HH--HHhhhhhhHHHHHHhHHH
Q 021279 159 EMEELINDFKAQNASLLAKVQNCAAEHKEKKCSAGEIQGNAALQERN----KALS---EH--LLKSLDGYRSLKKKYKYV 229 (315)
Q Consensus 159 emEeli~DlkAQN~~Ll~K~q~~a~e~k~~~~s~~e~~gN~aLq~RN----kaLS---eq--LlKSiDgyRSlKrkyk~~ 229 (315)
.+-.+..++.++-......||..+.........+|.+.|= |..-- .+++ +. |-.-..|=.-...+|+++
T Consensus 30 ~lk~~f~~~~~~~~~~~~eL~~~v~~lGg~p~~~gs~~g~--lhr~w~~lks~~~~~~d~aiL~~~e~gEd~~~~~y~~a 107 (139)
T TIGR02284 30 ELATLFRRIAGEKSAIVSELQQVVASLGGKPEDHGSMVGS--LHQFWGKIRATLTPNDDYVVLEEAERGEDRAKKAYDET 107 (139)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCcHHHH--HHHHHHHHHHHHcCCChHHHHHHHHHhHHHHHHHHHHH
Confidence 4566677777777777777777777665433334443321 11110 1122 11 334455666788899998
Q ss_pred HHHh---HHHHHHHHHHHHHHHHHHHHHHHHH
Q 021279 230 KEEN---TAMRATMEELGKKVEAGIDQILGFR 258 (315)
Q Consensus 230 qeEN---~~i~~tme~~~~~V~aG~~~i~~fr 258 (315)
=+++ ..++.+++..-.+|-.+.|+|+.+|
T Consensus 108 L~~~~l~~~~r~~l~~q~~~i~~~~d~i~~l~ 139 (139)
T TIGR02284 108 LADQDTPAAARDVALRQYPGVRACHDVIRALR 139 (139)
T ss_pred HhcCCCChHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 8765 6789999999999999999998775
No 143
>PF07246 Phlebovirus_NSM: Phlebovirus nonstructural protein NS-M; InterPro: IPR009879 This entry consists of several Phlebovirus nonstructural NS-M proteins, which represent the N-terminal region of the M polyprotein precursor. The function of this family is unknown.
Probab=29.49 E-value=3e+02 Score=26.50 Aligned_cols=53 Identities=15% Similarity=0.248 Sum_probs=32.4
Q ss_pred CccchhhhhhhHHHHHH---HHhhhccccccccCCCcchhhhhhHHhhHhHHHHhh
Q 021279 24 EDLSFEGIAANVKLLLK---LIQDHTEASTKDQDHRKPQRIAGMITILDDVKTRIQ 76 (315)
Q Consensus 24 ed~slEGiatNvKLLLK---LiQdHneastkd~D~rK~qRvagMmtILDdvk~RIq 76 (315)
.+..||||.-=.---.| ..-+++-.|..-.-+-|.-.--.||.|+-.|.+=|+
T Consensus 35 neSPleglv~YWe~~~kk~~~~~~~~k~C~iG~g~~k~mtn~t~mk~IeeVq~S~~ 90 (264)
T PF07246_consen 35 NESPLEGLVYYWEEEMKKRRMMPGFNKKCRIGSGDLKEMTNKTMMKIIEEVQLSIS 90 (264)
T ss_pred CCCCchHHHHHHHHHHHHhccCCccccCcccCCcchhhcchhhHHHHHHHHhcccc
Confidence 45667887543321222 244555666655556666677789999988866554
No 144
>PF10354 DUF2431: Domain of unknown function (DUF2431); InterPro: IPR019446 This entry represents the N-terminal domain of a family of proteins whose function is not known.
Probab=29.08 E-value=21 Score=30.50 Aligned_cols=36 Identities=31% Similarity=0.398 Sum_probs=29.7
Q ss_pred hhhhhhHHHHHHhHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 021279 214 KSLDGYRSLKKKYKYVKEENTAMRATMEELGKKVEAGIDQ 253 (315)
Q Consensus 214 KSiDgyRSlKrkyk~~qeEN~~i~~tme~~~~~V~aG~~~ 253 (315)
-|+|++..|.+||.++. ..-..|++.|+.|--|+|-
T Consensus 27 Ts~ds~~~l~~kY~~~~----~nl~~L~~~g~~V~~~VDa 62 (166)
T PF10354_consen 27 TSYDSEEELLQKYPDAE----ENLEELRELGVTVLHGVDA 62 (166)
T ss_pred eecCchHHHHHhcccHH----HHHHHHhhcCCccccCCCC
Confidence 58999999999999766 3456679999999888874
No 145
>PF05769 DUF837: Protein of unknown function (DUF837); InterPro: IPR008555 This family consists of several eukaryotic proteins of unknown function. One of the family members (O02197 from SWISSPROT) is a circulating cathodic antigen (CCA) found in Schistosoma mansoni (Blood fluke) [].
Probab=28.92 E-value=4.1e+02 Score=23.54 Aligned_cols=25 Identities=24% Similarity=0.503 Sum_probs=17.8
Q ss_pred HHhHHHHHHhHHHHHHHHHHHHHHH
Q 021279 224 KKYKYVKEENTAMRATMEELGKKVE 248 (315)
Q Consensus 224 rkyk~~qeEN~~i~~tme~~~~~V~ 248 (315)
+...+.+.||+.++.+++++.-.+.
T Consensus 70 ~qi~~Lq~EN~eL~~~leEhq~ale 94 (181)
T PF05769_consen 70 RQIRQLQQENRELRQSLEEHQSALE 94 (181)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3457778888888888888765443
No 146
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=28.91 E-value=7.3e+02 Score=26.41 Aligned_cols=59 Identities=25% Similarity=0.334 Sum_probs=41.8
Q ss_pred hhHHHHHHHHHHhhHHHHHHHHHhHHhhhhhcccccccccchhhHHhhHHHHHHHHhhhhhhHHHHHHhHHH
Q 021279 158 NEMEELINDFKAQNASLLAKVQNCAAEHKEKKCSAGEIQGNAALQERNKALSEHLLKSLDGYRSLKKKYKYV 229 (315)
Q Consensus 158 nemEeli~DlkAQN~~Ll~K~q~~a~e~k~~~~s~~e~~gN~aLq~RNkaLSeqLlKSiDgyRSlKrkyk~~ 229 (315)
.+++.=+.-|++|-+.-+.+++.+..+.+ .|+++...|.|.+-...|.+..|-+|.+.+
T Consensus 561 ~ei~~rv~~Lk~~~e~Ql~~L~~l~e~~~-------------~l~~~ae~LaeR~e~a~d~Qe~L~~R~~~v 619 (717)
T PF10168_consen 561 EEIQRRVKLLKQQKEQQLKELQELQEERK-------------SLRESAEKLAERYEEAKDKQEKLMKRVDRV 619 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666677778888888888888887655 366777777777666667777766666543
No 147
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=28.90 E-value=5.2e+02 Score=24.68 Aligned_cols=105 Identities=17% Similarity=0.254 Sum_probs=58.5
Q ss_pred hHHHHHHHhhhhhhHHHHHHHHHHhhHHHHHHHHHhHHhhhhhcccccccccchhhHHhhHHHHHHHHhhhhhhHHHHHH
Q 021279 146 MAGELARKVHELNEMEELINDFKAQNASLLAKVQNCAAEHKEKKCSAGEIQGNAALQERNKALSEHLLKSLDGYRSLKKK 225 (315)
Q Consensus 146 MA~ElaRKv~ELnemEeli~DlkAQN~~Ll~K~q~~a~e~k~~~~s~~e~~gN~aLq~RNkaLSeqLlKSiDgyRSlKrk 225 (315)
+...++.|+++|..+-.|.|++-..-++|..-|..... .++.+.... .-+.-+.+=-++|.+.+....+.-.++++.
T Consensus 108 ~~~~l~~k~~dlk~~R~Laseit~~GA~LydlL~kE~~-lr~~R~~a~--~r~~e~~~iE~~l~~ai~~~~~~~~~~~~~ 184 (267)
T PF10234_consen 108 FKFDLSSKIQDLKAARQLASEITQRGASLYDLLGKEVE-LREERQRAL--ARPLELNEIEKALKEAIKAVQQQLQQTQQQ 184 (267)
T ss_pred hhcccchhhhhHHHHHHHHHHHHHHHHHHHHHHhchHh-HHHHHHHHH--cCCcCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55567778888888888888888888888777765553 332221111 122222333334444444444444555555
Q ss_pred hHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 021279 226 YKYVKEENTAMRATMEELGKKVEAGIDQ 253 (315)
Q Consensus 226 yk~~qeEN~~i~~tme~~~~~V~aG~~~ 253 (315)
+-.+..+...+-.-++.-..+++-.-.|
T Consensus 185 l~~l~~de~~Le~KIekkk~ELER~qKR 212 (267)
T PF10234_consen 185 LNNLASDEANLEAKIEKKKQELERNQKR 212 (267)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555555555555555555555544444
No 148
>PRK14153 heat shock protein GrpE; Provisional
Probab=28.88 E-value=2.2e+02 Score=25.80 Aligned_cols=14 Identities=0% Similarity=0.306 Sum_probs=7.5
Q ss_pred HHHHhhhhhhcchh
Q 021279 276 TALEGMFDSFNMKI 289 (315)
Q Consensus 276 saLe~mfe~~~mKi 289 (315)
..|...|+.+|++.
T Consensus 121 k~~~~vL~k~Gv~~ 134 (194)
T PRK14153 121 KQFFSILEKYGLER 134 (194)
T ss_pred HHHHHHHHHCCCee
Confidence 34555556666553
No 149
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=28.87 E-value=6.4e+02 Score=25.71 Aligned_cols=32 Identities=19% Similarity=0.402 Sum_probs=19.8
Q ss_pred HHHHHHhhhhhccccc---cHHHHHHHHHhhhhhh
Q 021279 254 ILGFRQRIATKEEQEV---DIEEEITALEGMFDSF 285 (315)
Q Consensus 254 i~~fr~R~~~~~eq~~---dIeeEisaLe~mfe~~ 285 (315)
+..+++|+..-..+++ +++.|....+.+|+.|
T Consensus 361 l~~~~~~~~~~~~~~~e~~~L~Re~~~~~~~Y~~l 395 (754)
T TIGR01005 361 VNQLKAASAQAGEQQVDLDALQRDAAAKRQLYESY 395 (754)
T ss_pred HHHHHHHHHhCcHhHHHHHHHHHHHHHHHHHHHHH
Confidence 6666676665554433 3556666777777765
No 150
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=28.68 E-value=5.4e+02 Score=27.91 Aligned_cols=107 Identities=20% Similarity=0.226 Sum_probs=0.0
Q ss_pred Hhhcchhh----hHhHHHHHHHhhhhhhHHHHHHHHHH-------hhHHHHHHHHHhHHhhhhhcccccccccchhhHHh
Q 021279 136 CSSLGKEK----EIMAGELARKVHELNEMEELINDFKA-------QNASLLAKVQNCAAEHKEKKCSAGEIQGNAALQER 204 (315)
Q Consensus 136 CSSLGKEK----eIMA~ElaRKv~ELnemEeli~DlkA-------QN~~Ll~K~q~~a~e~k~~~~s~~e~~gN~aLq~R 204 (315)
|++.+.|- +.+..+.+....+|..|+.-..+|.. |.+++..+|++.-..-. ....+-. .+++.
T Consensus 573 ~ss~e~E~~~~dea~~~~~~el~eelE~le~eK~~Le~~L~~~~d~lE~~~~qL~E~E~~L~-----eLq~eL~-~~keS 646 (769)
T PF05911_consen 573 DSSSEAEINSEDEADTSEKKELEEELEKLESEKEELEMELASCQDQLESLKNQLKESEQKLE-----ELQSELE-SAKES 646 (769)
T ss_pred cccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHH-HHHHH
Q ss_pred hHHHHHHHHhhhhhhHHHHHHhHHHHHHhHHHHHHHHHHHHHHH
Q 021279 205 NKALSEHLLKSLDGYRSLKKKYKYVKEENTAMRATMEELGKKVE 248 (315)
Q Consensus 205 NkaLSeqLlKSiDgyRSlKrkyk~~qeEN~~i~~tme~~~~~V~ 248 (315)
|..+-.||-..=..|++|.-++.+++.|+..++.-+..+..++.
T Consensus 647 ~s~~E~ql~~~~e~~e~le~~~~~~e~E~~~l~~Ki~~Le~Ele 690 (769)
T PF05911_consen 647 NSLAETQLKAMKESYESLETRLKDLEAEAEELQSKISSLEEELE 690 (769)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHH
No 151
>PF00435 Spectrin: Spectrin repeat; InterPro: IPR002017 Spectrin repeats [] are found in several proteins involved in cytoskeletal structure. These include spectrin alpha and beta subunits [, ], alpha-actinin [] and dystrophin. The spectrin repeat forms a three-helix bundle. The second helix is interrupted by proline in some sequences. The repeats are defined by a characteristic tryptophan (W) residue at position 17 in helix A and a leucine (L) at 2 residues from the carboxyl end of helix C.; GO: 0005515 protein binding; PDB: 1HCI_A 1QUU_A 3FB2_B 1S35_A 1U5P_A 1U4Q_A 1CUN_B 1YDI_B 3EDV_A 1AJ3_A ....
Probab=28.55 E-value=2e+02 Score=19.82 Aligned_cols=66 Identities=18% Similarity=0.264 Sum_probs=37.5
Q ss_pred hhhHHHHHHhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-hhccccccHHHHHHHHHhhhhhhcchhhhhc
Q 021279 217 DGYRSLKKKYKYVKEENTAMRATMEELGKKVEAGIDQILGFRQRIA-TKEEQEVDIEEEITALEGMFDSFNMKIKKHI 293 (315)
Q Consensus 217 DgyRSlKrkyk~~qeEN~~i~~tme~~~~~V~aG~~~i~~fr~R~~-~~~eq~~dIeeEisaLe~mfe~~~mKi~kh~ 293 (315)
+.-..+-++++.++.+=......++.+- .+-+.+. .+......|.+.++.|...|+.|.=.+..+.
T Consensus 34 ~~~~~~~~~~~~~~~ei~~~~~~l~~l~-----------~~~~~L~~~~~~~~~~i~~~~~~l~~~w~~l~~~~~~r~ 100 (105)
T PF00435_consen 34 EELEEQLKKHKELQEEIESRQERLESLN-----------EQAQQLIDSGPEDSDEIQEKLEELNQRWEALCELVEERR 100 (105)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHTTHTTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhhHHHHHHHHHHHHH-----------HHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444555555555444444444332 2222221 2234556799999999999999876665543
No 152
>PF10376 Mei5: Double-strand recombination repair protein ; InterPro: IPR018468 Mei5 is one of a pair of meiosis-specific proteins which facilitate the loading of Dmc1 on to Rad51 on DNA at double-strand breaks during recombination. Recombination is carried out by a large protein complex based around the two RecA homologues, Rad51 and Dmc1 []. This complex may play both a catalytic and a structural role in the interaction between homologous chromosomes during meiosis. Mei5 is seen to contain a coiled-coli region.
Probab=28.44 E-value=2.7e+02 Score=25.59 Aligned_cols=44 Identities=23% Similarity=0.432 Sum_probs=35.6
Q ss_pred hhhhHhHHHHHHHh---hhhhhHHHHHHHHHHhhHHHHHHHHHhHHh
Q 021279 141 KEKEIMAGELARKV---HELNEMEELINDFKAQNASLLAKVQNCAAE 184 (315)
Q Consensus 141 KEKeIMA~ElaRKv---~ELnemEeli~DlkAQN~~Ll~K~q~~a~e 184 (315)
+|.+.-...++.+. .+|++|++||...+.--...+.+||....+
T Consensus 150 ~~e~lr~L~~~k~~r~Kn~~~~Lq~lI~Kwr~~~q~~l~eL~~~~~~ 196 (221)
T PF10376_consen 150 KEEELRRLKLVKQYRSKNDLEQLQSLIKKWRSASQEALYELQSEMSE 196 (221)
T ss_pred HHHHHHHhHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 67777777776655 455599999999999989999999988886
No 153
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=28.38 E-value=3.1e+02 Score=26.71 Aligned_cols=42 Identities=19% Similarity=0.248 Sum_probs=17.3
Q ss_pred hHHhhHHHHHHHHhhhhhhHHHHHHhHHHHHHhHHHHHHHHH
Q 021279 201 LQERNKALSEHLLKSLDGYRSLKKKYKYVKEENTAMRATMEE 242 (315)
Q Consensus 201 Lq~RNkaLSeqLlKSiDgyRSlKrkyk~~qeEN~~i~~tme~ 242 (315)
+.++--.+-++|..-+.---.|...+...+-|-...+.-+..
T Consensus 133 ~ke~~ee~kekl~E~~~EkeeL~~eleele~e~ee~~erlk~ 174 (290)
T COG4026 133 LKEDYEELKEKLEELQKEKEELLKELEELEAEYEEVQERLKR 174 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555444333333333333333333333333333
No 154
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=28.19 E-value=3e+02 Score=27.44 Aligned_cols=29 Identities=3% Similarity=0.101 Sum_probs=12.9
Q ss_pred HHHHHHhhhhhhHHHHHHhHHHHHHhHHH
Q 021279 208 LSEHLLKSLDGYRSLKKKYKYVKEENTAM 236 (315)
Q Consensus 208 LSeqLlKSiDgyRSlKrkyk~~qeEN~~i 236 (315)
|-+++.+...-|+.++++++..+.+...+
T Consensus 159 ~~~~~~~~~~~~~~~~~~L~~l~~~~~~~ 187 (563)
T TIGR00634 159 KVKAYRELYQAWLKARQQLKDRQQKEQEL 187 (563)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Confidence 33334444444555555555444443333
No 155
>PF13094 CENP-Q: CENP-Q, a CENPA-CAD centromere complex subunit
Probab=27.99 E-value=3.5e+02 Score=22.46 Aligned_cols=65 Identities=29% Similarity=0.340 Sum_probs=46.8
Q ss_pred CCCchHHHHHHHHHhHHHHHHHHHHHHHhhcchhhhHhHHHHHHHhhhhhhHHHHHHHHHHhhHHHHHHHHH
Q 021279 109 EPITDDKEKLRRQLSASLAARKSLEVLCSSLGKEKEIMAGELARKVHELNEMEELINDFKAQNASLLAKVQN 180 (315)
Q Consensus 109 e~~~dekeklkkeL~ASlaArkSLe~mCSSLGKEKeIMA~ElaRKv~ELnemEeli~DlkAQN~~Ll~K~q~ 180 (315)
+...+.+..|.++|. ++.++|+. |-+|.+-+-..+++--..|.++|.=+..+.++++....+++.
T Consensus 23 e~ll~~~~~LE~qL~---~~~~~l~l----Lq~e~~~~e~~le~d~~~L~~Le~~~~~~~~e~~~~~~~~~~ 87 (160)
T PF13094_consen 23 EQLLDRKRALERQLA---ANLHQLEL----LQEEIEKEEAALERDYEYLQELEKNAKALEREREEEEKKAHP 87 (160)
T ss_pred HHHHHHHHHHHHHHH---HHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccch
Confidence 444555555666665 34555543 556777777888888888899999999999999998888643
No 156
>PF03980 Nnf1: Nnf1 ; InterPro: IPR007128 NNF1 is an essential yeast gene required for proper spindle orientation, nucleolar and nuclear envelope structure and mRNA export [].
Probab=27.91 E-value=3e+02 Score=21.55 Aligned_cols=34 Identities=24% Similarity=0.315 Sum_probs=25.5
Q ss_pred HHHHHHHhhhhhhHHHHHHhHHHHHHhHHHHHHHHHH
Q 021279 207 ALSEHLLKSLDGYRSLKKKYKYVKEENTAMRATMEEL 243 (315)
Q Consensus 207 aLSeqLlKSiDgyRSlKrkyk~~qeEN~~i~~tme~~ 243 (315)
-|...+.+.++ .|..+|..++.+|.++..++.+.
T Consensus 73 ~l~~~~~~~~~---~L~~~l~~l~~eN~~L~~~i~~~ 106 (109)
T PF03980_consen 73 HLAPYKKKERE---QLNARLQELEEENEALAEEIQEQ 106 (109)
T ss_pred HhHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHh
Confidence 34555555544 58889999999999999887754
No 157
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=27.69 E-value=7.4e+02 Score=26.09 Aligned_cols=68 Identities=19% Similarity=0.265 Sum_probs=47.9
Q ss_pred CCCchHHHHHHHHHhHHHHHHHHHHHHHhhcchhhhHhH--------HHHHHHhhhh---------hhHHHHHHHHHHhh
Q 021279 109 EPITDDKEKLRRQLSASLAARKSLEVLCSSLGKEKEIMA--------GELARKVHEL---------NEMEELINDFKAQN 171 (315)
Q Consensus 109 e~~~dekeklkkeL~ASlaArkSLe~mCSSLGKEKeIMA--------~ElaRKv~EL---------nemEeli~DlkAQN 171 (315)
.-+.++.+++|++|-+-.+.|--++--|.+|=.|-+.|- -+.+....+. +++-.-|.|++||-
T Consensus 179 ~rl~~~l~~~r~~ld~Etllr~d~~n~~q~Lleel~f~~~~h~~eI~e~~~~~~rd~t~~~r~~F~~eL~~Ai~eiRaqy 258 (546)
T KOG0977|consen 179 SRLREELARARKQLDDETLLRVDLQNRVQTLLEELAFLKRIHKQEIEEERRKARRDTTADNREYFKNELALAIREIRAQY 258 (546)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHhhcccccchHHHHHHHHHHHHHHHHHH
Confidence 345677888888999999888888888888877755443 3445555555 45556678888887
Q ss_pred HHHHH
Q 021279 172 ASLLA 176 (315)
Q Consensus 172 ~~Ll~ 176 (315)
+.-+.
T Consensus 259 e~~~~ 263 (546)
T KOG0977|consen 259 EAISR 263 (546)
T ss_pred HHHHH
Confidence 66553
No 158
>KOG2398 consensus Predicted proline-serine-threonine phosphatase-interacting protein (PSTPIP) [Cell cycle control, cell division, chromosome partitioning]
Probab=27.60 E-value=7.5e+02 Score=26.09 Aligned_cols=17 Identities=35% Similarity=0.530 Sum_probs=9.4
Q ss_pred hhhhhHHHHHHhHHHHH
Q 021279 215 SLDGYRSLKKKYKYVKE 231 (315)
Q Consensus 215 SiDgyRSlKrkyk~~qe 231 (315)
+=..||++.-+|..+++
T Consensus 151 ~~~~y~~~~~~~~~vr~ 167 (611)
T KOG2398|consen 151 AREEYRSLVAKLEKVRK 167 (611)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34456666666655544
No 159
>PRK11637 AmiB activator; Provisional
Probab=27.41 E-value=5.5e+02 Score=24.51 Aligned_cols=35 Identities=14% Similarity=0.171 Sum_probs=15.0
Q ss_pred HHHHHhhhhhhHHHHHHHHHHhhHHHHHHHHHhHH
Q 021279 149 ELARKVHELNEMEELINDFKAQNASLLAKVQNCAA 183 (315)
Q Consensus 149 ElaRKv~ELnemEeli~DlkAQN~~Ll~K~q~~a~ 183 (315)
+|+..-+++...+.=|.+++++.+.+-+.+...+.
T Consensus 97 ~i~~~~~ei~~l~~eI~~~q~~l~~~~~~l~~rlr 131 (428)
T PRK11637 97 TLNQLNKQIDELNASIAKLEQQQAAQERLLAAQLD 131 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333344444444444444444444444444443
No 160
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=27.38 E-value=3.2e+02 Score=22.89 Aligned_cols=12 Identities=25% Similarity=0.470 Sum_probs=8.1
Q ss_pred hhhhHHHHHHhH
Q 021279 216 LDGYRSLKKKYK 227 (315)
Q Consensus 216 iDgyRSlKrkyk 227 (315)
--||..|.|=|.
T Consensus 69 ~~g~~NL~~LY~ 80 (110)
T PRK13169 69 GEGKDNLARLYQ 80 (110)
T ss_pred cchHHHHHHHHH
Confidence 347777777764
No 161
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=27.28 E-value=2.9e+02 Score=23.96 Aligned_cols=55 Identities=27% Similarity=0.382 Sum_probs=28.7
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHhhcchhhhHhHHHHHHHhhhhhhHHHHHHHHH
Q 021279 114 DKEKLRRQLSASLAARKSLEVLCSSLGKEKEIMAGELARKVHELNEMEELINDFK 168 (315)
Q Consensus 114 ekeklkkeL~ASlaArkSLe~mCSSLGKEKeIMA~ElaRKv~ELnemEeli~Dlk 168 (315)
+.+.|+-+++.--.-+.-|+.=-.+|-+||+.+..++=.+-..+.++|-+.+++.
T Consensus 53 eie~L~~el~~lt~el~~L~~EL~~l~sEk~~L~k~lq~~q~kv~eLE~~~~~~~ 107 (140)
T PF10473_consen 53 EIETLEEELEELTSELNQLELELDTLRSEKENLDKELQKKQEKVSELESLNSSLE 107 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 4444555555544445555555555556666665555554444444444444443
No 162
>PRK04863 mukB cell division protein MukB; Provisional
Probab=27.13 E-value=1e+03 Score=27.61 Aligned_cols=17 Identities=18% Similarity=0.214 Sum_probs=12.1
Q ss_pred chHHHhhhhcCCCCCCC
Q 021279 85 SVAELRRCNTDLRPNRA 101 (315)
Q Consensus 85 r~aeLRRCnTdLrp~~~ 101 (315)
.+.+.|+--.+++.++.
T Consensus 238 ~l~~~r~t~~~~~~tq~ 254 (1486)
T PRK04863 238 ALRENRMTLEAIRVTQS 254 (1486)
T ss_pred HHHHHHHHHHHHHhCcc
Confidence 34577888888887764
No 163
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=27.04 E-value=3.9e+02 Score=22.69 Aligned_cols=95 Identities=20% Similarity=0.213 Sum_probs=50.7
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHhhcchhhhHhHHHHHHHhhhhhhHHHHHHHHHHhhHHHHHHHHHhHHhhhhhcccccc
Q 021279 115 KEKLRRQLSASLAARKSLEVLCSSLGKEKEIMAGELARKVHELNEMEELINDFKAQNASLLAKVQNCAAEHKEKKCSAGE 194 (315)
Q Consensus 115 keklkkeL~ASlaArkSLe~mCSSLGKEKeIMA~ElaRKv~ELnemEeli~DlkAQN~~Ll~K~q~~a~e~k~~~~s~~e 194 (315)
..+.+-|-|..+.+--=+=. ++-.-+..-+.++-.+|+-+..++.|++..-+..+.. .
T Consensus 95 ~~~fraQRN~YIsGf~LfL~----------l~I~r~~~li~~l~~~~~~~~~~~kq~~~~~~~~~~~------------~ 152 (192)
T PF05529_consen 95 AKKFRAQRNMYISGFALFLS----------LVIRRVHSLIKELIKLEEKLEALKKQAESASEAAEKL------------L 152 (192)
T ss_pred HHHHHHHHhHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhh------------h
Confidence 55667777777754321111 2344555667788888888888888877655443332 1
Q ss_pred cccchhhHHhhHHHHHHHHhhhhhhHHHHHHhHHHHH
Q 021279 195 IQGNAALQERNKALSEHLLKSLDGYRSLKKKYKYVKE 231 (315)
Q Consensus 195 ~~gN~aLq~RNkaLSeqLlKSiDgyRSlKrkyk~~qe 231 (315)
.+.+..+.+--+.|.++|-+.-..+-.||...+..++
T Consensus 153 ~~~~~~~~~ei~~lk~el~~~~~~~~~LkkQ~~~l~~ 189 (192)
T PF05529_consen 153 KEENKKLSEEIEKLKKELEKKEKEIEALKKQSEGLQK 189 (192)
T ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 1223333344444444444444444455554444433
No 164
>PF06456 Arfaptin: Arfaptin-like domain; InterPro: IPR010504 Arfaptin interacts with ARF1, a small GTPase involved in vesicle budding at the Golgi complex and immature secretory granules. The structure of arfaptin shows that upon binding to a small GTPase, arfaptin forms a an elongated, crescent-shaped dimer of three-helix coiled-coils []. The N-terminal region of ICA69 is similar to arfaptin [].; PDB: 1I4D_B 1I4L_B 1I49_B 1I4T_A 4DCN_D.
Probab=26.70 E-value=1.4e+02 Score=27.12 Aligned_cols=116 Identities=21% Similarity=0.202 Sum_probs=53.8
Q ss_pred HHhHHHHHHHHHHHHHhhcchhhhHhHHHHHHHhhhhhhHHHHHHHHHHhhHH------HHHHHHHhHHhhhhhcccccc
Q 021279 121 QLSASLAARKSLEVLCSSLGKEKEIMAGELARKVHELNEMEELINDFKAQNAS------LLAKVQNCAAEHKEKKCSAGE 194 (315)
Q Consensus 121 eL~ASlaArkSLe~mCSSLGKEKeIMA~ElaRKv~ELnemEeli~DlkAQN~~------Ll~K~q~~a~e~k~~~~s~~e 194 (315)
+|.|-+..-++.+-+|..|-+ ++.-+.+..+++...+.-.+|+=++... |-......+.-|+- ..
T Consensus 34 eL~~kle~l~~~~~~y~~L~~----~~~~~~~~l~~l~q~q~~lg~~f~~~~~~e~~~~l~~~f~~~~~~~~~-----~~ 104 (229)
T PF06456_consen 34 ELDAKLELLRDTQRTYRGLLK----HARAYQNRLQALSQTQKELGDFFAELGVREKSPALGEEFSANGEAQRS-----LA 104 (229)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHH--H-CCGHHHHHHHHHHHHH-----HH
T ss_pred HHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHH-----HH
Confidence 455556666666666666644 3444455555555555555554443332 22222222222221 00
Q ss_pred cccch---hhHHhhHHHHHHHHhhhhhhHHHHHHhHHHHHHhHHHHHHHHHHHH
Q 021279 195 IQGNA---ALQERNKALSEHLLKSLDGYRSLKKKYKYVKEENTAMRATMEELGK 245 (315)
Q Consensus 195 ~~gN~---aLq~RNkaLSeqLlKSiDgyRSlKrkyk~~qeEN~~i~~tme~~~~ 245 (315)
-+|.. +|.-=...|.--+-|-|...+--=++|.+++-|=.+-|.-|+++..
T Consensus 105 ~~~~~L~~~l~~~~~~l~Tf~~kaI~DT~~Tik~ye~aR~EY~ay~~~lke~~~ 158 (229)
T PF06456_consen 105 KQGETLLKALKRFLSDLNTFRNKAIPDTLLTIKKYEDARFEYDAYRLWLKEMSD 158 (229)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 01110 0111111111122233333333456788888888888888888873
No 165
>PF13874 Nup54: Nucleoporin complex subunit 54; PDB: 3T97_B.
Probab=25.77 E-value=3.9e+02 Score=22.21 Aligned_cols=47 Identities=26% Similarity=0.374 Sum_probs=11.7
Q ss_pred hhHHHHHHHHhhhhhhHHHHHHhHHHHHHhHHHHHHHHHHHHHHHHH
Q 021279 204 RNKALSEHLLKSLDGYRSLKKKYKYVKEENTAMRATMEELGKKVEAG 250 (315)
Q Consensus 204 RNkaLSeqLlKSiDgyRSlKrkyk~~qeEN~~i~~tme~~~~~V~aG 250 (315)
|+..||-.+|+-+-----++.+-.-+..|...|+.-|+.+..++++.
T Consensus 80 r~~~L~hR~l~v~~~~eilr~~g~~l~~eEe~L~~~le~l~~~l~~p 126 (141)
T PF13874_consen 80 RHQELSHRLLRVLRKQEILRNRGYALSPEEEELRKRLEALEAQLNAP 126 (141)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH--------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHcCc
Confidence 44456766666554444555555557777788888888888888775
No 166
>PF08074 CHDCT2: CHDCT2 (NUC038) domain; InterPro: IPR012957 The CHDCT2 C-terminal domain is found in PHD/RING fingers and chromo domain-associated CHD-like helicases [].; GO: 0003677 DNA binding, 0005524 ATP binding, 0008270 zinc ion binding, 0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=25.74 E-value=49 Score=30.22 Aligned_cols=27 Identities=44% Similarity=0.624 Sum_probs=21.5
Q ss_pred HHHHHHHhhhhhhHHHHHHHHHHhhHHHH
Q 021279 147 AGELARKVHELNEMEELINDFKAQNASLL 175 (315)
Q Consensus 147 A~ElaRKv~ELnemEeli~DlkAQN~~Ll 175 (315)
|..+.+|| ||.+|||.+|+||--.-|-
T Consensus 123 a~~vl~kv--L~qleelLsDMKaDV~RLP 149 (173)
T PF08074_consen 123 ANAVLHKV--LNQLEELLSDMKADVTRLP 149 (173)
T ss_pred ccHHHHHH--HHHHHHHHHHhhccccccC
Confidence 55677777 8999999999999765553
No 167
>PF15358 TSKS: Testis-specific serine kinase substrate
Probab=25.35 E-value=4.1e+02 Score=27.91 Aligned_cols=95 Identities=27% Similarity=0.390 Sum_probs=57.6
Q ss_pred HHHHHHHHhhcchhhhHhHHHHHHHhhhhhhHHHHHHHHHHhhHHHHHHHHHhHHhhhhhcccccccccchhhHHhhHHH
Q 021279 129 RKSLEVLCSSLGKEKEIMAGELARKVHELNEMEELINDFKAQNASLLAKVQNCAAEHKEKKCSAGEIQGNAALQERNKAL 208 (315)
Q Consensus 129 rkSLe~mCSSLGKEKeIMA~ElaRKv~ELnemEeli~DlkAQN~~Ll~K~q~~a~e~k~~~~s~~e~~gN~aLq~RNkaL 208 (315)
-+.||--||+|- .-|-|.-||-.|+|+.-+.||.--.++..-|... |-|- ++--|+.+.|.+.-+-|
T Consensus 141 Vq~LQseCsvls-------EnLErrrQEaeELEgyCsqLk~nCrkVt~SVeda--EiKt----nvLkqnS~~LEekLr~l 207 (558)
T PF15358_consen 141 VQTLQSECSVLS-------ENLERRRQEAEELEGYCSQLKENCRKVTRSVEDA--EIKT----NVLKQNSALLEEKLRYL 207 (558)
T ss_pred HHHHHHHhHHHH-------HHHHhhhhHHHHHHHHHHHHHHHHHHHhhhHHHH--HHHh----cccccchHHHHHHHHHH
Confidence 478999999884 3466788999999999999994333333333221 1220 12223333343332222
Q ss_pred HHHHHhhhhhhHHHHHHhHHHHHHhH-HHHHHHHHHHHHHHHHHHH
Q 021279 209 SEHLLKSLDGYRSLKKKYKYVKEENT-AMRATMEELGKKVEAGIDQ 253 (315)
Q Consensus 209 SeqLlKSiDgyRSlKrkyk~~qeEN~-~i~~tme~~~~~V~aG~~~ 253 (315)
|..+|.|-. +--++|.++....+||+.|
T Consensus 208 -----------------q~qLqdE~prrqe~e~qELeqkleagls~ 236 (558)
T PF15358_consen 208 -----------------QQQLQDETPRRQEAEWQELEQKLEAGLSR 236 (558)
T ss_pred -----------------HHHhcccCcchhhhhHHHHHHHHhhhhhh
Confidence 233444443 4567899999999999988
No 168
>PRK11281 hypothetical protein; Provisional
Probab=25.12 E-value=1e+03 Score=26.87 Aligned_cols=55 Identities=24% Similarity=0.306 Sum_probs=38.8
Q ss_pred cccccchhhH---HhhHHHHHHHHhhhhhhHHHHHHhHHHHHHhHHHHHHHHHHHHHH
Q 021279 193 GEIQGNAALQ---ERNKALSEHLLKSLDGYRSLKKKYKYVKEENTAMRATMEELGKKV 247 (315)
Q Consensus 193 ~e~~gN~aLq---~RNkaLSeqLlKSiDgyRSlKrkyk~~qeEN~~i~~tme~~~~~V 247 (315)
+....|..+| +.|..||+.|.+.-+.--.|-++...++..=..+..|...+.+-+
T Consensus 272 ~~~~~~p~i~~~~~~N~~Ls~~L~~~t~~~~~l~~~~~~~~~~l~~~~q~~~~i~eqi 329 (1113)
T PRK11281 272 ARIQANPLVAQELEINLQLSQRLLKATEKLNTLTQQNLRVKNWLDRLTQSERNIKEQI 329 (1113)
T ss_pred cccCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455564444 689999999999988877777777766666666666666555444
No 169
>COG5057 LAG1 Phosphotyrosyl phosphatase activator [Cell division and chromosome partitioning / Signal transduction mechanisms]
Probab=24.83 E-value=71 Score=31.81 Aligned_cols=49 Identities=22% Similarity=0.409 Sum_probs=35.7
Q ss_pred hHHHHHHHHhhhcccccc--ccC--CCcchhhhhhHHhhHhHHHHhhhccchh
Q 021279 34 NVKLLLKLIQDHTEASTK--DQD--HRKPQRIAGMITILDDVKTRIQKSQPVA 82 (315)
Q Consensus 34 NvKLLLKLiQdHneastk--d~D--~rK~qRvagMmtILDdvk~RIqK~Qs~~ 82 (315)
-.+.+-+.|+|-+++..- ++| .---++|++||-|||+|+.=+|+--+..
T Consensus 30 Ay~ri~~fi~~l~~sik~~~~~d~~~~~Sssv~~m~~vL~ri~~I~qe~P~~~ 82 (353)
T COG5057 30 AYARIYNFILDLDESIKGCSDSDYHSEQSSSVNHMMNVLDRIKEITQETPPIP 82 (353)
T ss_pred HHHHHHHHHHHHHHHhcCCCCCcccchhHHHHHHHHHHHHHHHHHHhcCCCCC
Confidence 356777888898888763 333 2334679999999999998887765444
No 170
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=24.74 E-value=8.2e+02 Score=25.59 Aligned_cols=45 Identities=22% Similarity=0.302 Sum_probs=24.5
Q ss_pred HHHHHHHhhcchhhhHhHHHHHHHhhhhhhHHHHHHHHHHhhHHH
Q 021279 130 KSLEVLCSSLGKEKEIMAGELARKVHELNEMEELINDFKAQNASL 174 (315)
Q Consensus 130 kSLe~mCSSLGKEKeIMA~ElaRKv~ELnemEeli~DlkAQN~~L 174 (315)
.+|+-.+..|..+.+-|..++.+-..++..|++-+...++.++.|
T Consensus 331 ~~l~~~l~~l~~~i~~~~~~~~~l~~~~~q~~~e~~~~~~~~~~l 375 (594)
T PF05667_consen 331 EELQEQLDELESQIEELEAEIKMLKSSLKQLEEELEEKEAENEEL 375 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555555555555555555555555555555544
No 171
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=24.65 E-value=8.3e+02 Score=25.65 Aligned_cols=69 Identities=29% Similarity=0.387 Sum_probs=33.2
Q ss_pred HHhhcchhhhHhHHHHHHHhhhhhhHHHHHHHHHHhhHHHHHHHHHhHHhhhhhcccccccccchhhHHhhHHHHHHHHh
Q 021279 135 LCSSLGKEKEIMAGELARKVHELNEMEELINDFKAQNASLLAKVQNCAAEHKEKKCSAGEIQGNAALQERNKALSEHLLK 214 (315)
Q Consensus 135 mCSSLGKEKeIMA~ElaRKv~ELnemEeli~DlkAQN~~Ll~K~q~~a~e~k~~~~s~~e~~gN~aLq~RNkaLSeqLlK 214 (315)
+.|-|-.|++---.|+=+.++++.+- .+....||+.+++-.+.- ..| | .-|+.|-+||..
T Consensus 112 ~Ls~L~~EqEerL~ELE~~le~~~e~-------~~D~~kLLe~lqsdk~t~-----------SRA-l-sQN~eLK~QL~E 171 (617)
T PF15070_consen 112 QLSRLNQEQEERLAELEEELERLQEQ-------QEDRQKLLEQLQSDKATA-----------SRA-L-SQNRELKEQLAE 171 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHhhhcccchHH-----------HHH-H-HhHHHHHHHHHH
Confidence 44555555555555555554444331 122445666666543311 111 1 235666666666
Q ss_pred hhhhhHHHH
Q 021279 215 SLDGYRSLK 223 (315)
Q Consensus 215 SiDgyRSlK 223 (315)
-=|||-.|-
T Consensus 172 lq~~Fv~lt 180 (617)
T PF15070_consen 172 LQDAFVKLT 180 (617)
T ss_pred HHHHHHHHH
Confidence 666665543
No 172
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=24.28 E-value=3.5e+02 Score=22.70 Aligned_cols=41 Identities=29% Similarity=0.283 Sum_probs=35.2
Q ss_pred hhHHhhHHHHHHHHhhhhhhHHHHHHhHHHHHHhHHHHHHH
Q 021279 200 ALQERNKALSEHLLKSLDGYRSLKKKYKYVKEENTAMRATM 240 (315)
Q Consensus 200 aLq~RNkaLSeqLlKSiDgyRSlKrkyk~~qeEN~~i~~tm 240 (315)
.|=++-..|++||...+.....||.....+-|||..++.--
T Consensus 5 elfd~l~~le~~l~~l~~el~~LK~~~~el~EEN~~L~iEN 45 (110)
T PRK13169 5 EIFDALDDLEQNLGVLLKELGALKKQLAELLEENTALRLEN 45 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35566778999999999999999999999999999987653
No 173
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=24.00 E-value=2.5e+02 Score=22.94 Aligned_cols=49 Identities=27% Similarity=0.328 Sum_probs=29.7
Q ss_pred HHHHHHhhHHHHHHHHHhHHhhhhhcccccccccchhhHHhhHHHHHHHHhhhhhhHHHHHH
Q 021279 164 INDFKAQNASLLAKVQNCAAEHKEKKCSAGEIQGNAALQERNKALSEHLLKSLDGYRSLKKK 225 (315)
Q Consensus 164 i~DlkAQN~~Ll~K~q~~a~e~k~~~~s~~e~~gN~aLq~RNkaLSeqLlKSiDgyRSlKrk 225 (315)
|..||.+|..|-..+++... +...|+..|..|-+...--=+..|+|=-|
T Consensus 27 ieELKekn~~L~~e~~~~~~-------------~r~~L~~en~qLk~E~~~WqerLr~LLGk 75 (79)
T PRK15422 27 IEELKEKNNSLSQEVQNAQH-------------QREELERENNHLKEQQNGWQERLQALLGR 75 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHh-------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 67788888888887776544 22356666666655554444444555433
No 174
>PF14932 HAUS-augmin3: HAUS augmin-like complex subunit 3
Probab=24.00 E-value=5.5e+02 Score=23.33 Aligned_cols=75 Identities=21% Similarity=0.254 Sum_probs=52.3
Q ss_pred chHHHHHHHHHhHHHHHHHHHHHHHhhcchhhhHhHHHHHHHhhhhhhHHHHHHH----HHHhhHHHHHHHHHhHHhhh
Q 021279 112 TDDKEKLRRQLSASLAARKSLEVLCSSLGKEKEIMAGELARKVHELNEMEELIND----FKAQNASLLAKVQNCAAEHK 186 (315)
Q Consensus 112 ~dekeklkkeL~ASlaArkSLe~mCSSLGKEKeIMA~ElaRKv~ELnemEeli~D----lkAQN~~Ll~K~q~~a~e~k 186 (315)
.++.+.|++..+--.-=+.-|+.+-++++.+-..+-....+...+|+.....+.. +..+...+...|.+.+.+-.
T Consensus 74 e~el~~l~~~~~~~~~~~~~lq~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~l~~~~~k~~~~l~~l~~~v~~l~~~~~ 152 (256)
T PF14932_consen 74 EEELEALQEYKELYEQLRNKLQQLDSSLSQELSELEGKEEEAQKKLKKAQKELSAECSKLNNELNQLLGEVSKLASELA 152 (256)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444456677888888888888888888888888877776654 77788888888888877554
No 175
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=23.86 E-value=5.7e+02 Score=23.46 Aligned_cols=95 Identities=21% Similarity=0.254 Sum_probs=67.2
Q ss_pred HHHHHHHHHHHhhcchhhhHhHHHHHHHhhhhhhHHHHHHHHHHhhHHHHHHHHHhHH-hhhhhcccccccccchhhHHh
Q 021279 126 LAARKSLEVLCSSLGKEKEIMAGELARKVHELNEMEELINDFKAQNASLLAKVQNCAA-EHKEKKCSAGEIQGNAALQER 204 (315)
Q Consensus 126 laArkSLe~mCSSLGKEKeIMA~ElaRKv~ELnemEeli~DlkAQN~~Ll~K~q~~a~-e~k~~~~s~~e~~gN~aLq~R 204 (315)
|...++|+--|..+..+-..-..-+.+-=..+..+|.=|.+|+++-.+|.+..+...+ +.-.+...++...++.+.=+|
T Consensus 91 l~~~~~le~~~~~~~~~~~~~~~~~~~l~~~~~~Le~Ki~e~~~~~~~l~ar~~~akA~~~v~~~~~~~s~~sa~~~fer 170 (225)
T COG1842 91 LEEKQSLEDLAKALEAELQQAEEQVEKLKKQLAALEQKIAELRAKKEALKARKAAAKAQEKVNRSLGGGSSSSAMAAFER 170 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhhHHHHHH
Confidence 5566788888988888888777777777778888999999999999999988776665 444445555555566555555
Q ss_pred hHHHHHHHHhhhhhhH
Q 021279 205 NKALSEHLLKSLDGYR 220 (315)
Q Consensus 205 NkaLSeqLlKSiDgyR 220 (315)
-+.-.+..-.--++|-
T Consensus 171 ~e~kiee~ea~a~~~~ 186 (225)
T COG1842 171 MEEKIEEREARAEAAA 186 (225)
T ss_pred HHHHHHHHHHHHHHhH
Confidence 5555555444444443
No 176
>PF15365 PNRC: Proline-rich nuclear receptor coactivator
Probab=23.81 E-value=70 Score=24.11 Aligned_cols=18 Identities=22% Similarity=0.305 Sum_probs=15.3
Q ss_pred CccchhhhhhhHHHHHHH
Q 021279 24 EDLSFEGIAANVKLLLKL 41 (315)
Q Consensus 24 ed~slEGiatNvKLLLKL 41 (315)
.....++++-|.|.||++
T Consensus 40 ~~~~~~~~T~~Lr~LL~v 57 (58)
T PF15365_consen 40 PSSDDESMTRQLRRLLKV 57 (58)
T ss_pred ccccHHHHHHHHHHHHcc
Confidence 346899999999999985
No 177
>KOG1043 consensus Ca2+-binding transmembrane protein LETM1/MRS7 [Function unknown]
Probab=23.47 E-value=2.2e+02 Score=29.55 Aligned_cols=72 Identities=22% Similarity=0.306 Sum_probs=53.7
Q ss_pred HHHHHHHHhhhhhhHHHHHHhHHHHHHhHHHHHHHHHHHHHHHH----------HHHH-HHHHHHhhhhhccccccHHHH
Q 021279 206 KALSEHLLKSLDGYRSLKKKYKYVKEENTAMRATMEELGKKVEA----------GIDQ-ILGFRQRIATKEEQEVDIEEE 274 (315)
Q Consensus 206 kaLSeqLlKSiDgyRSlKrkyk~~qeEN~~i~~tme~~~~~V~a----------G~~~-i~~fr~R~~~~~eq~~dIeeE 274 (315)
..|+.++.-+-|-++-+.++|....+----|+.|++++...+.- -+|| +..||. ++-+. =-+|
T Consensus 203 ~~lpstfq~~kk~~~k~~k~~~~r~~~sk~Lq~tl~~~~~~~k~~~~~e~~qs~~fd~f~~kvr~-~~~~~-----S~ee 276 (499)
T KOG1043|consen 203 NDLPSTFQESKKEEEKLSKKYVERSEASKFLQKTLQQMIDRIKTWSNLETSQSIEFDRFLGKVRF-IGLGV-----STEE 276 (499)
T ss_pred ccchhhHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhcc-cCCCc-----cHHH
Confidence 35778888888888888888888777777889999988877765 5666 777776 22221 2468
Q ss_pred HHHHHhhhh
Q 021279 275 ITALEGMFD 283 (315)
Q Consensus 275 isaLe~mfe 283 (315)
|.+..+||.
T Consensus 277 ii~~aklf~ 285 (499)
T KOG1043|consen 277 IIAFAKLFS 285 (499)
T ss_pred HHHHHHHhc
Confidence 888888886
No 178
>PF04859 DUF641: Plant protein of unknown function (DUF641); InterPro: IPR006943 This conserved region is found in a number of plant proteins of unknown function.
Probab=23.23 E-value=4.9e+02 Score=22.48 Aligned_cols=75 Identities=24% Similarity=0.424 Sum_probs=39.5
Q ss_pred hchHHHhhhhcCCCCCCCCCCcCCCCCCchHHHHHHHHHhHHHHHHHHHHHHHhhcchhhhHhHHHHHHHhhhhhhHHHH
Q 021279 84 RSVAELRRCNTDLRPNRAPRDKKLCEPITDDKEKLRRQLSASLAARKSLEVLCSSLGKEKEIMAGELARKVHELNEMEEL 163 (315)
Q Consensus 84 rr~aeLRRCnTdLrp~~~P~DkKp~e~~~dekeklkkeL~ASlaArkSLe~mCSSLGKEKeIMA~ElaRKv~ELnemEel 163 (315)
+++.+|+||+.+-.+.+.|....+... .++.+.+= +..|++--.|- .|+-.|=-|+..+-+-
T Consensus 55 ~~Ls~LK~~y~~~~~~~~~~~~~l~a~-~~e~qsli----------~~yE~~~~kLe-------~e~~~Kdsei~~Lr~~ 116 (131)
T PF04859_consen 55 RRLSELKRRYRKKQSDPSPQVARLAAE-IQEQQSLI----------KTYEIVVKKLE-------AELRAKDSEIDRLREK 116 (131)
T ss_pred HHHHHHHHHHHcCCCCCCccccccccc-hHHHHHHH----------HHHHHHHHHHH-------HHHHHHHHHHHHHHHH
Confidence 477899999998888777665553222 23322221 12222222221 2344455555555555
Q ss_pred HHHHHHhhHHHHH
Q 021279 164 INDFKAQNASLLA 176 (315)
Q Consensus 164 i~DlkAQN~~Ll~ 176 (315)
+.++...|..|=+
T Consensus 117 L~~~~~~n~~Lek 129 (131)
T PF04859_consen 117 LDELNRANKSLEK 129 (131)
T ss_pred HHHHHHHHHHhhc
Confidence 5666666665543
No 179
>TIGR02449 conserved hypothetical protein TIGR02449. Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.
Probab=22.92 E-value=2.5e+02 Score=21.88 Aligned_cols=33 Identities=27% Similarity=0.295 Sum_probs=17.1
Q ss_pred HhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 021279 225 KYKYVKEENTAMRATMEELGKKVEAGIDQILGF 257 (315)
Q Consensus 225 kyk~~qeEN~~i~~tme~~~~~V~aG~~~i~~f 257 (315)
.....+.|++.+..-++.-.-.|+|=|.|+.++
T Consensus 29 q~~~~~~ER~~L~ekne~Ar~rvEamI~RLk~l 61 (65)
T TIGR02449 29 QEKTWREERAQLLEKNEQARQKVEAMITRLKAL 61 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 334445555555555555555555555555443
No 180
>PF15233 SYCE1: Synaptonemal complex central element protein 1
Probab=22.71 E-value=1.7e+02 Score=25.84 Aligned_cols=100 Identities=23% Similarity=0.305 Sum_probs=66.7
Q ss_pred hHhHHHHhhhccchhhhchHHHhhhhcCCCCCCCCCCcCCCCCCchHHHHHHHHHhHHHHHHHHHHHHHhhcchhhhHhH
Q 021279 68 LDDVKTRIQKSQPVAKRSVAELRRCNTDLRPNRAPRDKKLCEPITDDKEKLRRQLSASLAARKSLEVLCSSLGKEKEIMA 147 (315)
Q Consensus 68 LDdvk~RIqK~Qs~~krr~aeLRRCnTdLrp~~~P~DkKp~e~~~dekeklkkeL~ASlaArkSLe~mCSSLGKEKeIMA 147 (315)
++|+-+||-+.|-++|+.-.||..-.+-- - .=.+--++...|+-.|+.-||.--.+...|+.-| .|||.+|
T Consensus 8 iE~LInrInelQQaKKk~~EELgEa~~l~-e----aL~~ELDsL~~EkvhLeeilnkKqe~l~iLqlhc----qeke~ea 78 (134)
T PF15233_consen 8 IEDLINRINELQQAKKKSSEELGEAQALW-E----ALQRELDSLNGEKVHLEEILNKKQETLRILQLHC----QEKESEA 78 (134)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHH-H----HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH----HHHHHHh
Confidence 46777899999999888877876533210 0 0022345666777788888888888888999999 4777766
Q ss_pred HHHHHHhhhhhhHHHHHHHHHHhhHHHHHHHHH
Q 021279 148 GELARKVHELNEMEELINDFKAQNASLLAKVQN 180 (315)
Q Consensus 148 ~ElaRKv~ELnemEeli~DlkAQN~~Ll~K~q~ 180 (315)
.- .|.++.-=.+--||.-|-+.||.+=..
T Consensus 79 qr----q~~~~~eck~R~~fe~qLE~lm~qHKd 107 (134)
T PF15233_consen 79 QR----QQTLLQECKLRLDFEEQLEDLMGQHKD 107 (134)
T ss_pred hh----hhhhhHhHHHHHHHHHHHHHHHHHHHH
Confidence 53 244333333566788888888876433
No 181
>PF01065 Adeno_hexon: Hexon, adenovirus major coat protein, N-terminal domain; InterPro: IPR016107 Hexon is a major coat protein found in various species-specific Adenoviruses, which are type II dsDNA viruses. Hexon coat proteins are synthesised during late infection and form homo-trimers. The 240 copies of the hexon trimer that are produced are organised so that 12 lie on each of the 20 facets. The central 9 hexons in a facet are cemented together by 12 copies of polypeptide IX. The penton complex, formed by the peripentonal hexons and base hexon (holding in place a fibre), lie at each of the 12 vertices []. The hexon coat protein is a duplication consisting of two domains with a similar fold packed together like the nucleoplasmin subunits. Within a hexon trimer, the domains are arranged around a pseudo 6-fold axis. The domains have a beta-sandwich structure consisting of 8 strands in two sheets with a jelly-roll topology; each domain is heavily decorated with many insertions []. This entry represents the N-terminal domain of hexon coat proteins.; GO: 0005198 structural molecule activity, 0019028 viral capsid; PDB: 2BVI_M 1VSZ_K 3IYN_D 3TG7_A 1P30_A 2OBE_B 2INY_A 1P2Z_A.
Probab=22.48 E-value=41 Score=34.57 Aligned_cols=18 Identities=56% Similarity=0.632 Sum_probs=12.3
Q ss_pred ccchh--hHHhhHHHHHHHH
Q 021279 196 QGNAA--LQERNKALSEHLL 213 (315)
Q Consensus 196 ~gN~a--Lq~RNkaLSeqLl 213 (315)
|-|++ |||||-+||=||+
T Consensus 272 qlNaVvDLQDRNTELSYQ~m 291 (495)
T PF01065_consen 272 QLNAVVDLQDRNTELSYQLM 291 (495)
T ss_dssp -SBS--B-TTS-HHHHHHHH
T ss_pred CceEEEEccccCchhhhHHH
Confidence 56664 8999999999986
No 182
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=22.32 E-value=5.4e+02 Score=22.63 Aligned_cols=49 Identities=20% Similarity=0.324 Sum_probs=33.8
Q ss_pred HHHHHHHHHHhhcchhhhHhHHHHHHHhhhhhhHHHHHHHHHHhhHHHHHHHHH
Q 021279 127 AARKSLEVLCSSLGKEKEIMAGELARKVHELNEMEELINDFKAQNASLLAKVQN 180 (315)
Q Consensus 127 aArkSLe~mCSSLGKEKeIMA~ElaRKv~ELnemEeli~DlkAQN~~Ll~K~q~ 180 (315)
+.||.|+.. ..+.-|-.+++.--.+.++++.=+.+++++.+.+-.+...
T Consensus 111 ~~rk~l~~e-----~~~~~l~~~i~~L~~e~~~L~~~~~~l~~~~e~~ek~~~e 159 (189)
T PF10211_consen 111 GMRKALQAE-----QGKQELEEEIEELEEEKEELEKQVQELKNKCEQLEKREEE 159 (189)
T ss_pred HHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567777764 2345666666666677788888888888887777655544
No 183
>PLN03229 acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional
Probab=21.91 E-value=1.1e+03 Score=26.03 Aligned_cols=37 Identities=30% Similarity=0.357 Sum_probs=25.6
Q ss_pred cchhhHHhhHHHHHHHHhhhhh---hHHHHHHhHHHHHHh
Q 021279 197 GNAALQERNKALSEHLLKSLDG---YRSLKKKYKYVKEEN 233 (315)
Q Consensus 197 gN~aLq~RNkaLSeqLlKSiDg---yRSlKrkyk~~qeEN 233 (315)
-|..++.+-.+|-+|+-+.|-. --.||.|+..++.|.
T Consensus 643 p~~~~k~KIe~L~~eIkkkIe~av~ss~LK~k~E~Lk~Ev 682 (762)
T PLN03229 643 PPPNLQEKIESLNEEINKKIERVIRSSDLKSKIELLKLEV 682 (762)
T ss_pred CChhhHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHH
Confidence 4556677878888887777643 234788887777765
No 184
>PRK13922 rod shape-determining protein MreC; Provisional
Probab=21.77 E-value=4.2e+02 Score=23.61 Aligned_cols=53 Identities=17% Similarity=0.135 Sum_probs=27.6
Q ss_pred HHHHHhhhhhhHHHHHHHHHHhhHHHHHHHHHhHHhhhhhcccccccccchhhHHhhHHHHHH
Q 021279 149 ELARKVHELNEMEELINDFKAQNASLLAKVQNCAAEHKEKKCSAGEIQGNAALQERNKALSEH 211 (315)
Q Consensus 149 ElaRKv~ELnemEeli~DlkAQN~~Ll~K~q~~a~e~k~~~~s~~e~~gN~aLq~RNkaLSeq 211 (315)
..++.+.+....=.-..+++++|+.|.+++.....+.. ....|+..|..|.+.
T Consensus 56 ~~~~~~~~~~~~~~~~~~l~~en~~L~~e~~~l~~~~~----------~~~~l~~en~~L~~l 108 (276)
T PRK13922 56 APREFVSGVFESLASLFDLREENEELKKELLELESRLQ----------ELEQLEAENARLREL 108 (276)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHH
Confidence 34444444443333345666777777666655444222 123566666666553
No 185
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=21.54 E-value=5.2e+02 Score=22.13 Aligned_cols=41 Identities=15% Similarity=0.348 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHhhcchhhhHhHHHHHHHhhhhhhHHHHHHHHHHhhHHHHHHHHHhHH
Q 021279 126 LAARKSLEVLCSSLGKEKEIMAGELARKVHELNEMEELINDFKAQNASLLAKVQNCAA 183 (315)
Q Consensus 126 laArkSLe~mCSSLGKEKeIMA~ElaRKv~ELnemEeli~DlkAQN~~Ll~K~q~~a~ 183 (315)
.|.|+||.--|.|+||- |+.+-.-|.+.-..|..++++--.
T Consensus 35 ~vTrr~m~~A~~~v~kq-----------------l~~vs~~l~~tKkhLsqRId~vd~ 75 (126)
T PF07889_consen 35 FVTRRSMSDAVASVSKQ-----------------LEQVSESLSSTKKHLSQRIDRVDD 75 (126)
T ss_pred HHHHHhHHHHHHHHHHH-----------------HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 57788999999998874 444444555555556666655433
No 186
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=21.53 E-value=6e+02 Score=22.88 Aligned_cols=41 Identities=17% Similarity=0.209 Sum_probs=21.5
Q ss_pred chhhhHhHHHHHHHhhhhhhHHHHHHHHHHhhHHHHHHHHH
Q 021279 140 GKEKEIMAGELARKVHELNEMEELINDFKAQNASLLAKVQN 180 (315)
Q Consensus 140 GKEKeIMA~ElaRKv~ELnemEeli~DlkAQN~~Ll~K~q~ 180 (315)
-.+.+++...+..-..++...+.-+..++++-+.+-+.+..
T Consensus 129 ~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~i~~~~~~l~~ 169 (423)
T TIGR01843 129 KGQQSLFESRKSTLRAQLELILAQIKQLEAELAGLQAQLQA 169 (423)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445555555555555555555555555555555444443
No 187
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=20.53 E-value=9.7e+02 Score=27.18 Aligned_cols=107 Identities=24% Similarity=0.329 Sum_probs=0.0
Q ss_pred HHHHHHhhHHHHHHHHHhHHhhhhhcccccccccchhhHHhhHHHHH----------------HHHhhh-----------
Q 021279 164 INDFKAQNASLLAKVQNCAAEHKEKKCSAGEIQGNAALQERNKALSE----------------HLLKSL----------- 216 (315)
Q Consensus 164 i~DlkAQN~~Ll~K~q~~a~e~k~~~~s~~e~~gN~aLq~RNkaLSe----------------qLlKSi----------- 216 (315)
+.++++|-+.++.--+..++ |-+......+++.+.+=..+-+++-| |+.||.
T Consensus 342 ~~~~~~~l~~~~~ear~~~~-q~~~ql~~le~~~~e~q~~~qe~~~e~eqLr~elaql~a~r~q~eka~~~~ee~e~~~l 420 (980)
T KOG0980|consen 342 VAQLKAQLENLKEEARRRIE-QYENQLLALEGELQEQQREAQENREEQEQLRNELAQLLASRTQLEKAQVLVEEAENKAL 420 (980)
T ss_pred HHHHhhhhhhHHHHHHHHHH-HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q ss_pred ---hhhHHHHHHhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccccccHHHHHHHHHhhhhhh
Q 021279 217 ---DGYRSLKKKYKYVKEENTAMRATMEELGKKVEAGIDQILGFRQRIATKEEQEVDIEEEITALEGMFDSF 285 (315)
Q Consensus 217 ---DgyRSlKrkyk~~qeEN~~i~~tme~~~~~V~aG~~~i~~fr~R~~~~~eq~~dIeeEisaLe~mfe~~ 285 (315)
.-|-.||.||-..-.+-..+-.-..++-..+.....-|- |.++++.+|+.+.+.+
T Consensus 421 ~~e~ry~klkek~t~l~~~h~~lL~K~~di~kQle~~~~s~~--------------~~~~~~~~L~d~le~~ 478 (980)
T KOG0980|consen 421 AAENRYEKLKEKYTELRQEHADLLRKYDDIQKQLESAEQSID--------------DVEEENTNLNDQLEEL 478 (980)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH--------------HHHHHHHHHHHHHHHH
No 188
>PRK06800 fliH flagellar assembly protein H; Validated
Probab=20.43 E-value=3.8e+02 Score=25.47 Aligned_cols=57 Identities=16% Similarity=0.229 Sum_probs=47.3
Q ss_pred HHHHHHhHHHHHHHHHHHHHhhcchhhhHhHHHHHHHhhhhhhHHHHHHHHHHhhHH
Q 021279 117 KLRRQLSASLAARKSLEVLCSSLGKEKEIMAGELARKVHELNEMEELINDFKAQNAS 173 (315)
Q Consensus 117 klkkeL~ASlaArkSLe~mCSSLGKEKeIMA~ElaRKv~ELnemEeli~DlkAQN~~ 173 (315)
-+.+.+.+-+|++++|+.-.+-|..|.++.+.|=+.-..|-....+++..--++-++
T Consensus 35 ~~~~d~~~L~~~Q~~L~~e~~~l~~eqQ~l~~er~~l~~er~~~~~~~~e~~~~~e~ 91 (228)
T PRK06800 35 EIQKDHEELLAQQKSLHKELNQLRQEQQKLERERQQLLADREQFQEHVQQQMKEIEA 91 (228)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356677788899999999999999999999999888888888888887766655443
Done!