Query 021279
Match_columns 315
No_of_seqs 6 out of 8
Neff 1.8
Searched_HMMs 29240
Date Mon Mar 25 15:22:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021279.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/021279hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1i84_S Smooth muscle myosin he 92.7 0.26 9E-06 50.5 8.0 71 113-183 864-934 (1184)
2 1c1g_A Tropomyosin; contractIl 90.4 4.8 0.00017 30.8 18.5 7 254-260 190-196 (284)
3 3oja_B Anopheles plasmodium-re 90.4 4.9 0.00017 36.5 12.9 30 155-184 456-485 (597)
4 2dfs_A Myosin-5A; myosin-V, in 89.3 7.2 0.00024 40.5 14.6 91 130-247 956-1046(1080)
5 1i84_S Smooth muscle myosin he 87.5 0.64 2.2E-05 47.7 5.6 11 62-72 777-787 (1184)
6 2fxo_A Myosin heavy chain, car 87.5 9.3 0.00032 30.2 13.8 72 112-183 19-90 (129)
7 3bas_A Myosin heavy chain, str 85.6 4.5 0.00016 30.6 8.1 63 112-181 20-82 (89)
8 3cvf_A Homer-3, homer protein 83.6 5 0.00017 30.9 7.6 71 166-263 3-73 (79)
9 3oja_B Anopheles plasmodium-re 80.7 10 0.00035 34.4 9.8 41 204-244 517-557 (597)
10 3ghg_A Fibrinogen alpha chain; 79.3 16 0.00055 36.6 11.4 28 235-262 114-141 (562)
11 3cve_A Homer protein homolog 1 70.0 29 0.00098 26.4 8.2 57 200-263 11-67 (72)
12 2dfs_A Myosin-5A; myosin-V, in 68.6 20 0.0007 37.2 9.5 66 218-286 978-1043(1080)
13 3iyk_A VP5; icosahedral virus; 65.1 74 0.0025 31.8 12.1 86 149-246 94-179 (526)
14 3o0z_A RHO-associated protein 62.5 76 0.0026 27.3 13.6 67 112-178 26-106 (168)
15 3ra3_B P2F; coiled coil domain 55.7 3.5 0.00012 27.0 0.7 26 254-279 2-27 (28)
16 1oeg_A Apolipoprotein E; siali 53.6 4.1 0.00014 26.2 0.8 21 163-183 2-22 (26)
17 3oja_A Leucine-rich immune mol 44.4 1.7E+02 0.0059 26.1 14.6 51 131-181 343-393 (487)
18 2xs1_A Programmed cell death 6 44.0 2.4E+02 0.0081 27.5 15.9 78 142-229 602-679 (704)
19 1a93_B MAX protein, coiled coi 43.3 16 0.00054 24.8 2.4 18 162-179 14-31 (34)
20 3a7p_A Autophagy protein 16; c 41.6 1.7E+02 0.0056 25.0 9.9 44 144-187 99-142 (152)
21 3okq_A BUD site selection prot 41.2 63 0.0021 27.3 6.3 73 112-187 53-135 (141)
22 1dh3_A Transcription factor CR 40.2 41 0.0014 23.6 4.4 33 151-183 18-50 (55)
23 1jnm_A Proto-oncogene C-JUN; B 39.9 47 0.0016 23.2 4.7 33 152-184 19-51 (62)
24 1dn1_B Syntaxin 1A, syntaxin b 39.0 1.9E+02 0.0064 24.9 12.1 69 159-231 74-146 (267)
25 2ocy_A RAB guanine nucleotide 38.1 1.5E+02 0.0051 25.1 8.2 27 207-233 3-29 (154)
26 3iv1_A Tumor susceptibility ge 37.1 1.4E+02 0.0048 22.9 7.5 55 222-279 12-66 (78)
27 2dgc_A Protein (GCN4); basic d 36.8 47 0.0016 23.9 4.3 47 116-181 10-56 (63)
28 1wle_A Seryl-tRNA synthetase; 36.1 1.1E+02 0.0039 29.3 8.1 34 209-242 69-102 (501)
29 2dq0_A Seryl-tRNA synthetase; 33.6 92 0.0031 29.3 6.9 76 209-291 30-108 (455)
30 3fhn_A Protein transport prote 32.2 1.2E+02 0.0043 30.7 7.9 102 154-267 9-113 (706)
31 2l7b_A Apolipoprotein E, APO-E 32.1 1.1E+02 0.0036 27.7 6.8 28 235-262 162-190 (307)
32 3na7_A HP0958; flagellar bioge 32.0 2.3E+02 0.008 24.0 17.2 128 118-252 16-153 (256)
33 2v71_A Nuclear distribution pr 31.2 2.6E+02 0.0089 24.2 11.7 91 155-254 49-146 (189)
34 1t2k_D Cyclic-AMP-dependent tr 30.7 83 0.0028 21.8 4.7 32 152-183 19-50 (61)
35 1s94_A S-syntaxin; three helix 30.1 1.4E+02 0.0049 23.7 6.6 68 158-228 81-151 (180)
36 3f1i_H Hepatocyte growth facto 29.4 2.2E+02 0.0077 22.9 10.5 73 160-239 2-77 (98)
37 3qne_A Seryl-tRNA synthetase, 29.1 88 0.003 30.2 6.0 82 201-289 22-108 (485)
38 2hg7_A Phage-like element PBSX 28.8 15 0.0005 30.3 0.5 49 88-143 45-93 (110)
39 2wt7_A Proto-oncogene protein 28.8 99 0.0034 21.8 4.8 33 151-183 19-51 (63)
40 1ez3_A Syntaxin-1A; three heli 28.6 1.8E+02 0.0061 21.5 7.9 67 159-228 51-120 (127)
41 2oqq_A Transcription factor HY 28.6 1E+02 0.0036 21.7 4.8 31 147-180 12-42 (42)
42 1go4_E MAD1 (mitotic arrest de 28.4 36 0.0012 27.2 2.7 75 217-293 12-95 (100)
43 3swk_A Vimentin; cytoskeleton, 28.3 1.6E+02 0.0056 22.0 6.3 60 220-286 3-62 (86)
44 2j5u_A MREC protein; bacterial 28.3 33 0.0011 29.8 2.7 23 219-241 38-60 (255)
45 3mq9_A Bone marrow stromal ant 28.2 3.2E+02 0.011 24.2 13.9 69 204-289 398-466 (471)
46 1ses_A Seryl-tRNA synthetase; 26.5 71 0.0024 29.6 4.8 75 210-291 28-103 (421)
47 3u06_A Protein claret segregat 26.4 66 0.0023 30.0 4.6 38 140-177 2-39 (412)
48 2dq3_A Seryl-tRNA synthetase; 25.6 44 0.0015 31.0 3.2 76 209-291 29-107 (425)
49 1m1j_A Fibrinogen alpha subuni 24.8 4.3E+02 0.015 26.3 10.0 83 191-280 48-153 (491)
50 2oto_A M protein; helical coil 24.1 1.7E+02 0.0059 23.3 6.1 9 167-175 34-42 (155)
51 3hnw_A Uncharacterized protein 23.5 2.9E+02 0.01 22.3 8.5 9 219-227 77-85 (138)
52 4emc_A Monopolin complex subun 23.3 1.9E+02 0.0065 25.5 6.6 67 229-295 25-92 (190)
53 1u5t_A Appears to BE functiona 22.8 1.5E+02 0.0052 26.2 5.9 105 161-287 26-149 (233)
54 2js5_A Uncharacterized protein 22.1 1.3E+02 0.0045 22.8 4.7 43 220-262 6-48 (71)
55 1ci6_A Transcription factor AT 22.1 1.4E+02 0.0049 21.1 4.7 32 152-183 20-51 (63)
56 1u4q_A Spectrin alpha chain, b 21.9 3.3E+02 0.011 22.2 12.8 70 214-294 245-315 (322)
57 3hnw_A Uncharacterized protein 20.8 3.4E+02 0.011 21.9 9.7 23 219-241 112-134 (138)
58 3q8t_A Beclin-1; autophagy, AT 20.7 2.8E+02 0.0097 21.1 9.1 50 111-160 2-51 (96)
59 3zcc_A HAMP, osmolarity sensor 20.6 1.9E+02 0.0065 19.0 7.7 50 236-285 60-110 (114)
No 1
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=92.70 E-value=0.26 Score=50.48 Aligned_cols=71 Identities=20% Similarity=0.249 Sum_probs=45.6
Q ss_pred hHHHHHHHHHhHHHHHHHHHHHHHhhcchhhhHhHHHHHHHhhhhhhHHHHHHHHHHhhHHHHHHHHHhHH
Q 021279 113 DDKEKLRRQLSASLAARKSLEVLCSSLGKEKEIMAGELARKVHELNEMEELINDFKAQNASLLAKVQNCAA 183 (315)
Q Consensus 113 dekeklkkeL~ASlaArkSLe~mCSSLGKEKeIMA~ElaRKv~ELnemEeli~DlkAQN~~Ll~K~q~~a~ 183 (315)
++.+.++.+|...-..++-++--...|-.|++....++...-.++.+.++-+..+.++.+.|-++++....
T Consensus 864 ~eL~el~~~L~~le~~l~ele~~l~~Le~e~~~l~~~L~~e~~~l~~~e~~l~~l~~~~~~Le~~l~ele~ 934 (1184)
T 1i84_S 864 EELQRTKERQQKAEAELKELEQKHTQLCEEKNLLQEKLQAETELYAEAEEMRVRLAAKKQELEEILHEMEA 934 (1184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555665555566667777777777777766666666666666677777776666666665555433
No 2
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A
Probab=90.43 E-value=4.8 Score=30.81 Aligned_cols=7 Identities=0% Similarity=0.069 Sum_probs=2.6
Q ss_pred HHHHHHh
Q 021279 254 ILGFRQR 260 (315)
Q Consensus 254 i~~fr~R 260 (315)
+..+..+
T Consensus 190 ~~~~~~~ 196 (284)
T 1c1g_A 190 CAELEEE 196 (284)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 3333333
No 3
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=90.36 E-value=4.9 Score=36.50 Aligned_cols=30 Identities=20% Similarity=0.253 Sum_probs=19.2
Q ss_pred hhhhhHHHHHHHHHHhhHHHHHHHHHhHHh
Q 021279 155 HELNEMEELINDFKAQNASLLAKVQNCAAE 184 (315)
Q Consensus 155 ~ELnemEeli~DlkAQN~~Ll~K~q~~a~e 184 (315)
+|+++.++.|..+++...+..+.++....+
T Consensus 456 ~e~~~~~~~i~~l~~~~~~~~~~l~~~~~~ 485 (597)
T 3oja_B 456 AEVNELRAEVQQLTNEQIQQEQLLQGLHAE 485 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 366666777777777666666666655543
No 4
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=89.30 E-value=7.2 Score=40.51 Aligned_cols=91 Identities=16% Similarity=0.235 Sum_probs=57.2
Q ss_pred HHHHHHHhhcchhhhHhHHHHHHHhhhhhhHHHHHHHHHHhhHHHHHHHHHhHHhhhhhcccccccccchhhHHhhHHHH
Q 021279 130 KSLEVLCSSLGKEKEIMAGELARKVHELNEMEELINDFKAQNASLLAKVQNCAAEHKEKKCSAGEIQGNAALQERNKALS 209 (315)
Q Consensus 130 kSLe~mCSSLGKEKeIMA~ElaRKv~ELnemEeli~DlkAQN~~Ll~K~q~~a~e~k~~~~s~~e~~gN~aLq~RNkaLS 209 (315)
..++.-|+.|-++-+-|-.. -.|+...+..|..|..+++.|-+.++....|.+ .|++++..+.
T Consensus 956 ~~~~~e~~~L~~~l~~le~~----~~e~~~~~~~v~~L~~e~~~l~~~~~~~~ke~~-------------~lee~~~~~~ 1018 (1080)
T 2dfs_A 956 ITYSTETEKLRSDVERLRMS----EEEAKNATNRVLSLQEEIAKLRKELHQTQTEKK-------------TIEEWADKYK 1018 (1080)
T ss_dssp HHHHHHHHHHHHTHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHH
Confidence 44566666665544433332 445556666677777777777666666555433 3455555444
Q ss_pred HHHHhhhhhhHHHHHHhHHHHHHhHHHHHHHHHHHHHH
Q 021279 210 EHLLKSLDGYRSLKKKYKYVKEENTAMRATMEELGKKV 247 (315)
Q Consensus 210 eqLlKSiDgyRSlKrkyk~~qeEN~~i~~tme~~~~~V 247 (315)
+ .|..+...+++||..++..++++...+
T Consensus 1019 ~----------~L~~kv~~L~~e~~~L~qq~~~l~~~~ 1046 (1080)
T 2dfs_A 1019 H----------ETEQLVSELKEQNTLLKTEKEELNRRI 1046 (1080)
T ss_dssp H----------HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred H----------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3 455788888889999998888887433
No 5
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=87.52 E-value=0.64 Score=47.70 Aligned_cols=11 Identities=18% Similarity=0.613 Sum_probs=7.7
Q ss_pred hhhHHhhHhHH
Q 021279 62 AGMITILDDVK 72 (315)
Q Consensus 62 agMmtILDdvk 72 (315)
+|++..|++.+
T Consensus 777 ~g~l~~LE~~r 787 (1184)
T 1i84_S 777 TGVLAHLEEER 787 (1184)
T ss_dssp TTHHHHHHHHH
T ss_pred chHHHHHHHHH
Confidence 57777777654
No 6
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=87.46 E-value=9.3 Score=30.22 Aligned_cols=72 Identities=26% Similarity=0.278 Sum_probs=65.2
Q ss_pred chHHHHHHHHHhHHHHHHHHHHHHHhhcchhhhHhHHHHHHHhhhhhhHHHHHHHHHHhhHHHHHHHHHhHH
Q 021279 112 TDDKEKLRRQLSASLAARKSLEVLCSSLGKEKEIMAGELARKVHELNEMEELINDFKAQNASLLAKVQNCAA 183 (315)
Q Consensus 112 ~dekeklkkeL~ASlaArkSLe~mCSSLGKEKeIMA~ElaRKv~ELnemEeli~DlkAQN~~Ll~K~q~~a~ 183 (315)
.++..+|+..|..+-+.|+-|+--..+|=.||..+...|.--...+.+.|+....|.++...|=.+|+..-.
T Consensus 19 ~eel~~lke~l~k~e~~r~ele~~~~~l~~Ek~~L~~qL~~E~~~l~e~EE~~~~L~~~k~eLe~~l~el~~ 90 (129)
T 2fxo_A 19 KEEFTRLKEALEKSEARRKELEEKMVSLLQEKNDLQLQVQAEQDNLADAEERCDQLIKNKIQLEAKVKEMNK 90 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467788999999999999999999999999999999999999899999999999999999888888877654
No 7
>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A
Probab=85.58 E-value=4.5 Score=30.56 Aligned_cols=63 Identities=19% Similarity=0.316 Sum_probs=55.2
Q ss_pred chHHHHHHHHHhHHHHHHHHHHHHHhhcchhhhHhHHHHHHHhhhhhhHHHHHHHHHHhhHHHHHHHHHh
Q 021279 112 TDDKEKLRRQLSASLAARKSLEVLCSSLGKEKEIMAGELARKVHELNEMEELINDFKAQNASLLAKVQNC 181 (315)
Q Consensus 112 ~dekeklkkeL~ASlaArkSLe~mCSSLGKEKeIMA~ElaRKv~ELnemEeli~DlkAQN~~Ll~K~q~~ 181 (315)
.++..+|+..|..+-+.|+-|+-.+.+|-.||..+... |.++||....|.++...|=.+|+..
T Consensus 20 eeel~~lke~l~k~e~~rkele~~~~~l~~ek~~L~~q-------l~eaEe~~~~L~~~K~eLE~~l~el 82 (89)
T 3bas_A 20 LKQMDKMKEDLAKTERIKKELEEQNVTLLEQKNDLFGS-------MKQLEDKVEELLSKNYHLENEVARL 82 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677888899999999999999999999999988877 8899999999999988887777664
No 8
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=83.57 E-value=5 Score=30.93 Aligned_cols=71 Identities=21% Similarity=0.371 Sum_probs=51.3
Q ss_pred HHHHhhHHHHHHHHHhHHhhhhhcccccccccchhhHHhhHHHHHHHHhhhhhhHHHHHHhHHHHHHhHHHHHHHHHHHH
Q 021279 166 DFKAQNASLLAKVQNCAAEHKEKKCSAGEIQGNAALQERNKALSEHLLKSLDGYRSLKKKYKYVKEENTAMRATMEELGK 245 (315)
Q Consensus 166 DlkAQN~~Ll~K~q~~a~e~k~~~~s~~e~~gN~aLq~RNkaLSeqLlKSiDgyRSlKrkyk~~qeEN~~i~~tme~~~~ 245 (315)
||-+|++.+..|||. +..||..|-+++ ++|...+.+.+.+-.+++.-+..+..
T Consensus 3 ~l~~e~e~~~~klq~--------------------~E~rN~~Le~~v-------~~le~~Le~s~~~q~~~~~Elk~l~e 55 (79)
T 3cvf_A 3 HMAAEREETQQKVQD--------------------LETRNAELEHQL-------RAMERSLEEARAERERARAEVGRAAQ 55 (79)
T ss_dssp -------CTTHHHHH--------------------HHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHH--------------------HHHhhhHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566677777777764 445677777665 67888888999888888888888888
Q ss_pred HHHHHHHHHHHHHHhhhh
Q 021279 246 KVEAGIDQILGFRQRIAT 263 (315)
Q Consensus 246 ~V~aG~~~i~~fr~R~~~ 263 (315)
-.+.-|+-+.-||+-+++
T Consensus 56 ~Ld~KI~eL~elRqgLak 73 (79)
T 3cvf_A 56 LLDVSLFELSELREGLAR 73 (79)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHhhHHHHHHHHHHHHHH
Confidence 888889999999997765
No 9
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=80.73 E-value=10 Score=34.44 Aligned_cols=41 Identities=12% Similarity=0.097 Sum_probs=19.0
Q ss_pred hhHHHHHHHHhhhhhhHHHHHHhHHHHHHhHHHHHHHHHHH
Q 021279 204 RNKALSEHLLKSLDGYRSLKKKYKYVKEENTAMRATMEELG 244 (315)
Q Consensus 204 RNkaLSeqLlKSiDgyRSlKrkyk~~qeEN~~i~~tme~~~ 244 (315)
|...+-..+..-...+-.++..|+.+++|...+..-+++..
T Consensus 517 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~~~ 557 (597)
T 3oja_B 517 RQAFKLRETQARRTEADAKQKETEDLEQENIALEKQLDNKR 557 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhHHHHHHHHHhhhhhhcchhhHHhhhHHHHHHHhhhh
Confidence 33333333333333344445555555555555555444443
No 10
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=79.29 E-value=16 Score=36.64 Aligned_cols=28 Identities=21% Similarity=0.379 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 021279 235 AMRATMEELGKKVEAGIDQILGFRQRIA 262 (315)
Q Consensus 235 ~i~~tme~~~~~V~aG~~~i~~fr~R~~ 262 (315)
.++..+..|.++|+.-+.+|+.++..|.
T Consensus 114 ELRRrIqyLKekVdnQlsnIrvLQsnLe 141 (562)
T 3ghg_A 114 DLRSRIEVLKRKVIEKVQHIQLLQKNVR 141 (562)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5777777888888888888888877543
No 11
>3cve_A Homer protein homolog 1; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, postsynaptic cell membrane, synapse; 1.75A {Rattus norvegicus}
Probab=70.01 E-value=29 Score=26.36 Aligned_cols=57 Identities=21% Similarity=0.381 Sum_probs=46.4
Q ss_pred hhHHhhHHHHHHHHhhhhhhHHHHHHhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 021279 200 ALQERNKALSEHLLKSLDGYRSLKKKYKYVKEENTAMRATMEELGKKVEAGIDQILGFRQRIAT 263 (315)
Q Consensus 200 aLq~RNkaLSeqLlKSiDgyRSlKrkyk~~qeEN~~i~~tme~~~~~V~aG~~~i~~fr~R~~~ 263 (315)
++..||..|-+++ ++|...+.+.+.+-.+++.-+..+..-.+.=|+-+.-||+-+++
T Consensus 11 ~~E~~N~~Le~~v-------~~le~~Le~s~~~q~~~~~Elk~~~e~Ld~KI~eL~elrq~Lak 67 (72)
T 3cve_A 11 EVEIRNKDLEGQL-------SEMEQRLEKSQSEQDAFRSNLKTLLEILDGKIFELTELRDNLAK 67 (72)
T ss_dssp HHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 4566788877776 67888888888888888888888888888889999999987654
No 12
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=68.64 E-value=20 Score=37.20 Aligned_cols=66 Identities=11% Similarity=0.142 Sum_probs=36.6
Q ss_pred hhHHHHHHhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccccccHHHHHHHHHhhhhhhc
Q 021279 218 GYRSLKKKYKYVKEENTAMRATMEELGKKVEAGIDQILGFRQRIATKEEQEVDIEEEITALEGMFDSFN 286 (315)
Q Consensus 218 gyRSlKrkyk~~qeEN~~i~~tme~~~~~V~aG~~~i~~fr~R~~~~~eq~~dIeeEisaLe~mfe~~~ 286 (315)
...+++.+.+..++|...++..++..-.+..+=-+++..+.+++. +.--++++|...|++-.+.++
T Consensus 978 e~~~~~~~v~~L~~e~~~l~~~~~~~~ke~~~lee~~~~~~~~L~---~kv~~L~~e~~~L~qq~~~l~ 1043 (1080)
T 2dfs_A 978 EAKNATNRVLSLQEEIAKLRKELHQTQTEKKTIEEWADKYKHETE---QLVSELKEQNTLLKTEKEELN 1043 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH
Confidence 344555566666666666666666665555554444555554333 222346666666666666555
No 13
>3iyk_A VP5; icosahedral virus; HET: MNA; 7.00A {Bluetongue virus}
Probab=65.14 E-value=74 Score=31.82 Aligned_cols=86 Identities=20% Similarity=0.195 Sum_probs=52.5
Q ss_pred HHHHHhhhhhhHHHHHHHHHHhhHHHHHHHHHhHHhhhhhcccccccccchhhHHhhHHHHHHHHhhhhhhHHHHHHhHH
Q 021279 149 ELARKVHELNEMEELINDFKAQNASLLAKVQNCAAEHKEKKCSAGEIQGNAALQERNKALSEHLLKSLDGYRSLKKKYKY 228 (315)
Q Consensus 149 ElaRKv~ELnemEeli~DlkAQN~~Ll~K~q~~a~e~k~~~~s~~e~~gN~aLq~RNkaLSeqLlKSiDgyRSlKrkyk~ 228 (315)
++++|+.||...+.=---+-..|+...+|+-+...+.++--+ .+...---+.|. -+-|-|+++||.-+
T Consensus 94 ~~~~Kl~eLE~e~k~d~~~~khn~~I~~k~g~~l~~v~~~~~----~~~~~e~~e~~q--~~~LekAl~s~~~i------ 161 (526)
T 3iyk_A 94 GIQAKLKELEDEQRNELVRLKYNDKIKEKFGKELEEVYNFMN----GEANAEIEDEKQ--FDILNKAVTSYNKI------ 161 (526)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH----HhhhhhhhHHHH--HHHHHHHHHHHHHH------
Confidence 578899999888776666778888888887776666554211 111111112222 24578888888744
Q ss_pred HHHHhHHHHHHHHHHHHH
Q 021279 229 VKEENTAMRATMEELGKK 246 (315)
Q Consensus 229 ~qeEN~~i~~tme~~~~~ 246 (315)
+++||..|...-.-+..|
T Consensus 162 ~~~e~~~l~~L~~AL~kE 179 (526)
T 3iyk_A 162 LTEEDLQMRRLATALQKE 179 (526)
T ss_pred HHHHHhHHHHHHHHHHHH
Confidence 566666665544444433
No 14
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=62.49 E-value=76 Score=27.33 Aligned_cols=67 Identities=19% Similarity=0.207 Sum_probs=29.5
Q ss_pred chHHHHHHHHHhHHHHHHHH-------HHHHHhhcchhhhHhHHHHHHH-------hhhhhhHHHHHHHHHHhhHHHHHH
Q 021279 112 TDDKEKLRRQLSASLAARKS-------LEVLCSSLGKEKEIMAGELARK-------VHELNEMEELINDFKAQNASLLAK 177 (315)
Q Consensus 112 ~dekeklkkeL~ASlaArkS-------Le~mCSSLGKEKeIMA~ElaRK-------v~ELnemEeli~DlkAQN~~Ll~K 177 (315)
+|--.||||+-.-.-.+..+ |+.+|.+|+..|.-.-.|++.- =-..+-++++|.||...+..|-..
T Consensus 26 sE~~~rlkK~~tEl~k~~~~~E~~~rELq~~~~~L~~~k~~Leke~~~LQa~L~qEr~~r~q~se~~~elq~ri~~L~~E 105 (168)
T 3o0z_A 26 SDTAVRLRKSHTEMSKSISQLESLNRELQERNRILENSKSQTDKDYYQLQAILEAERRDRGHDSEMIGDLQARITSLQEE 105 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556677654333333333 3345555555544333333321 112234455555555544444444
Q ss_pred H
Q 021279 178 V 178 (315)
Q Consensus 178 ~ 178 (315)
|
T Consensus 106 l 106 (168)
T 3o0z_A 106 V 106 (168)
T ss_dssp H
T ss_pred H
Confidence 3
No 15
>3ra3_B P2F; coiled coil domain, fiber, KIH interactions, synthetic biolo helical reconstruction, de novo protein; HET: PHI; 2.31A {Synthetic}
Probab=55.71 E-value=3.5 Score=26.96 Aligned_cols=26 Identities=35% Similarity=0.409 Sum_probs=13.9
Q ss_pred HHHHHHhhhhhccccccHHHHHHHHH
Q 021279 254 ILGFRQRIATKEEQEVDIEEEITALE 279 (315)
Q Consensus 254 i~~fr~R~~~~~eq~~dIeeEisaLe 279 (315)
|++++|.+++-+..-.-+|-||.+||
T Consensus 2 irrlkqknarlkqeiaaleyeiaale 27 (28)
T 3ra3_B 2 IRRLKQKNARLKQEIAALEYEIAALE 27 (28)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred hhHHHHhhhHHHHHHHHHHHHHHHhc
Confidence 66777777765533333455555554
No 16
>1oeg_A Apolipoprotein E; sialic acid, heparin-binding, repeat, signal, disease mutation, polymorphism; NMR {Homo sapiens} SCOP: j.39.1.1
Probab=53.61 E-value=4.1 Score=26.19 Aligned_cols=21 Identities=38% Similarity=0.525 Sum_probs=18.3
Q ss_pred HHHHHHHhhHHHHHHHHHhHH
Q 021279 163 LINDFKAQNASLLAKVQNCAA 183 (315)
Q Consensus 163 li~DlkAQN~~Ll~K~q~~a~ 183 (315)
++.|++.|-+.|++|||.-+.
T Consensus 2 ~~e~mr~Q~~~lveKvq~a~~ 22 (26)
T 1oeg_A 2 LVEDMQRQWAGLVEKVQAAVG 22 (26)
T ss_dssp HHHHTTTHHHHHHHHHHHHSC
T ss_pred hHHHHHHHHHHHHHHHHHHHc
Confidence 578999999999999998764
No 17
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=44.42 E-value=1.7e+02 Score=26.06 Aligned_cols=51 Identities=10% Similarity=0.104 Sum_probs=27.0
Q ss_pred HHHHHHhhcchhhhHhHHHHHHHhhhhhhHHHHHHHHHHhhHHHHHHHHHh
Q 021279 131 SLEVLCSSLGKEKEIMAGELARKVHELNEMEELINDFKAQNASLLAKVQNC 181 (315)
Q Consensus 131 SLe~mCSSLGKEKeIMA~ElaRKv~ELnemEeli~DlkAQN~~Ll~K~q~~ 181 (315)
+|---|+|-.-+-..+=.+-....++..++|+.++..+..-+..-..++..
T Consensus 343 ~L~gyC~s~~~~~~~~~~~~~~l~~~~~~le~~~~~~~~~~~~~~~~~~~~ 393 (487)
T 3oja_A 343 ALKEQYRTVIDQVTLRKQAKITLEQKKKALDEQVSNGRRAHAELDGTLQQA 393 (487)
T ss_dssp HHHHHTCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHh
Confidence 344567665544444444444555555666666666655444444444433
No 18
>2xs1_A Programmed cell death 6-interacting protein; protein transport-viral protein complex, cell cycle; 2.30A {Homo sapiens} PDB: 2xs8_A 2oev_A 2r05_A 2r02_A 2r03_A 2oex_A 2ojq_A
Probab=44.04 E-value=2.4e+02 Score=27.53 Aligned_cols=78 Identities=23% Similarity=0.274 Sum_probs=47.3
Q ss_pred hhhHhHHHHHHHhhhhhhHHHHHHHHHHhhHHHHHHHHHhHHhhhhhcccccccccchhhHHhhHHHHHHHHhhhhhhHH
Q 021279 142 EKEIMAGELARKVHELNEMEELINDFKAQNASLLAKVQNCAAEHKEKKCSAGEIQGNAALQERNKALSEHLLKSLDGYRS 221 (315)
Q Consensus 142 EKeIMA~ElaRKv~ELnemEeli~DlkAQN~~Ll~K~q~~a~e~k~~~~s~~e~~gN~aLq~RNkaLSeqLlKSiDgyRS 221 (315)
|..|+..||.+|...+. +.|.+-....+.||..++..-.+-...+ .++....+|+..|. .|..+.|.|..
T Consensus 602 ~e~lf~~eL~k~~~~~~---~~i~~~~~~Q~~ll~~i~~~~~~f~~~~------~~~~~~~~re~~~~-~l~~ay~~y~e 671 (704)
T 2xs1_A 602 EEALSVTELDRVYGGLT---TKVQESLKKQEGLLKNIQVSHQEFSKMK------QSNNEANLREEVLK-NLATAYDNFVE 671 (704)
T ss_dssp HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHS------CCCHHHHHHHHHHH-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHh------ccchhHHHHHHHHH-HHHHHHHHHHH
Confidence 56677777776554433 2344444555667777765544332111 12445577877765 67889999998
Q ss_pred HHHHhHHH
Q 021279 222 LKKKYKYV 229 (315)
Q Consensus 222 lKrkyk~~ 229 (315)
|+..+.+-
T Consensus 672 l~~~l~eG 679 (704)
T 2xs1_A 672 LVANLKEG 679 (704)
T ss_dssp HHHHHHHH
T ss_pred HHHhHHHH
Confidence 88876543
No 19
>1a93_B MAX protein, coiled coil, LZ; leucine zipper, 2D solution structure, H-bonds, buried salt bridge, proto-oncogene, nuclear protein; NMR {Mus musculus} SCOP: h.1.3.1 PDB: 2a93_B
Probab=43.26 E-value=16 Score=24.78 Aligned_cols=18 Identities=44% Similarity=0.508 Sum_probs=14.1
Q ss_pred HHHHHHHHhhHHHHHHHH
Q 021279 162 ELINDFKAQNASLLAKVQ 179 (315)
Q Consensus 162 eli~DlkAQN~~Ll~K~q 179 (315)
.=|.|||+||..|=+.+.
T Consensus 14 qDIddlkrQN~~Le~Qir 31 (34)
T 1a93_B 14 QDIDDLKRQNALLEQQVR 31 (34)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHH
Confidence 348899999998876553
No 20
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=41.59 E-value=1.7e+02 Score=25.01 Aligned_cols=44 Identities=20% Similarity=0.293 Sum_probs=32.0
Q ss_pred hHhHHHHHHHhhhhhhHHHHHHHHHHhhHHHHHHHHHhHHhhhh
Q 021279 144 EIMAGELARKVHELNEMEELINDFKAQNASLLAKVQNCAAEHKE 187 (315)
Q Consensus 144 eIMA~ElaRKv~ELnemEeli~DlkAQN~~Ll~K~q~~a~e~k~ 187 (315)
++.-.|+.--=-++|.+|+=+..|++.|.+|++.+-.++..--+
T Consensus 99 e~l~DEl~aLqlq~n~lE~kl~kLq~EN~~LV~RWM~rk~qEAe 142 (152)
T 3a7p_A 99 ERLNAALISGTIENNVLQQKLSDLKKEHSQLVARWLKKTEKETE 142 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555665555678999999999999999888777666554333
No 21
>3okq_A BUD site selection protein 6; coiled-coil, protein binding; 2.04A {Saccharomyces cerevisiae} PDB: 3onx_A
Probab=41.17 E-value=63 Score=27.34 Aligned_cols=73 Identities=25% Similarity=0.312 Sum_probs=49.9
Q ss_pred chHHHHHHHHHhHHHHHHHHHHHHHhhcchhhh----HhHHHHHHHhh---hhhhHHHHHHHHHHhhHHHHH---HHHHh
Q 021279 112 TDDKEKLRRQLSASLAARKSLEVLCSSLGKEKE----IMAGELARKVH---ELNEMEELINDFKAQNASLLA---KVQNC 181 (315)
Q Consensus 112 ~dekeklkkeL~ASlaArkSLe~mCSSLGKEKe----IMA~ElaRKv~---ELnemEeli~DlkAQN~~Ll~---K~q~~ 181 (315)
+...+-+.+++. +|.+.|+-|-..+..||- |-..||-.-+. .||-.|+|+.||+...+.+.+ -|..|
T Consensus 53 ~~ql~~v~kdi~---~a~~eL~~m~~~i~~ekP~WKKiWE~EL~~VceEQqfl~~QedL~~DL~eDL~ka~etf~lVeq~ 129 (141)
T 3okq_A 53 KKKLETVSKDLE---NAQADVLKLQEFIDTEKPHWKKTWEAELDKVCEEQQFLTLQEELILDLKEDLGKALETFDLIKLC 129 (141)
T ss_dssp HHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH---HHHHHHHHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555666665 477888889999999874 66788877665 499999999999988776544 45556
Q ss_pred HHhhhh
Q 021279 182 AAEHKE 187 (315)
Q Consensus 182 a~e~k~ 187 (315)
..|+.+
T Consensus 130 ~~eq~k 135 (141)
T 3okq_A 130 CEEQEK 135 (141)
T ss_dssp C-----
T ss_pred HHHHHh
Confidence 665543
No 22
>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1
Probab=40.21 E-value=41 Score=23.57 Aligned_cols=33 Identities=15% Similarity=0.288 Sum_probs=26.7
Q ss_pred HHHhhhhhhHHHHHHHHHHhhHHHHHHHHHhHH
Q 021279 151 ARKVHELNEMEELINDFKAQNASLLAKVQNCAA 183 (315)
Q Consensus 151 aRKv~ELnemEeli~DlkAQN~~Ll~K~q~~a~ 183 (315)
.||-.-+.++|.=|.+|..+|..|...+...-.
T Consensus 18 ~RKk~~~~~LE~~v~~L~~eN~~L~~~~~~L~~ 50 (55)
T 1dh3_A 18 RKKKEYVKSLENRVAVLENQNKTLIEELKALKD 50 (55)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356677888899999999999999988876543
No 23
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=39.94 E-value=47 Score=23.24 Aligned_cols=33 Identities=27% Similarity=0.433 Sum_probs=27.7
Q ss_pred HHhhhhhhHHHHHHHHHHhhHHHHHHHHHhHHh
Q 021279 152 RKVHELNEMEELINDFKAQNASLLAKVQNCAAE 184 (315)
Q Consensus 152 RKv~ELnemEeli~DlkAQN~~Ll~K~q~~a~e 184 (315)
||.+.+.++|.=|.+|.++|+.|...|...-.+
T Consensus 19 rKk~~~~~Le~~v~~L~~~n~~L~~~v~~L~~e 51 (62)
T 1jnm_A 19 RKLERIARLEEKVKTLKAQNSELASTANMLREQ 51 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 678888999999999999999999888765543
No 24
>1dn1_B Syntaxin 1A, syntaxin binding protein 1; protein-protein complex, multi-subunit; 2.60A {Rattus norvegicus} PDB: 3c98_B
Probab=38.98 E-value=1.9e+02 Score=24.92 Aligned_cols=69 Identities=20% Similarity=0.370 Sum_probs=38.8
Q ss_pred hHHHHHHHHHHhhHHHHHHHHHhHHhhhhh-cccccccccchhhHHh---hHHHHHHHHhhhhhhHHHHHHhHHHHH
Q 021279 159 EMEELINDFKAQNASLLAKVQNCAAEHKEK-KCSAGEIQGNAALQER---NKALSEHLLKSLDGYRSLKKKYKYVKE 231 (315)
Q Consensus 159 emEeli~DlkAQN~~Ll~K~q~~a~e~k~~-~~s~~e~~gN~aLq~R---NkaLSeqLlKSiDgyRSlKrkyk~~qe 231 (315)
+++.++.+++.....+-.+|+.....-... .+.+. ....+-| -..|+-.|...+..|+..-..|++--.
T Consensus 74 ~l~~l~~~i~~~~~~i~~~Lk~l~~~~~~~~~~~~~----~~e~Rirk~q~~~L~~~f~~~m~~yq~~Q~~y~e~~k 146 (267)
T 1dn1_B 74 ELEELMSDIKKTANKVRSKLKSIEQSIEQEEGLNRS----SADLRIRKTQHSTLSRKFVEVMSEYNATQSDYRERCK 146 (267)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCC----SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCC----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455566666666655555555543321110 00111 1111112 236999999999999999888887543
No 25
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=38.05 E-value=1.5e+02 Score=25.08 Aligned_cols=27 Identities=26% Similarity=0.310 Sum_probs=13.8
Q ss_pred HHHHHHHhhhhhhHHHHHHhHHHHHHh
Q 021279 207 ALSEHLLKSLDGYRSLKKKYKYVKEEN 233 (315)
Q Consensus 207 aLSeqLlKSiDgyRSlKrkyk~~qeEN 233 (315)
+||.+|..+|+-.-.|=-.|-....+.
T Consensus 3 sLStKLI~Ain~qs~LeD~L~~~R~el 29 (154)
T 2ocy_A 3 ALSTQLIESVDKQSHLEEQLNKSLKTI 29 (154)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHhhccHHHHHHHHHHHH
Confidence 356666666655544444444444333
No 26
>3iv1_A Tumor susceptibility gene 101 protein; coiled_COIL, tumorigenesis, CELL_cycle regulation, alternative splicing, cell cycle, cell division; HET: MSE; 2.50A {Homo sapiens}
Probab=37.07 E-value=1.4e+02 Score=22.92 Aligned_cols=55 Identities=13% Similarity=0.253 Sum_probs=40.1
Q ss_pred HHHHhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccccccHHHHHHHHH
Q 021279 222 LKKKYKYVKEENTAMRATMEELGKKVEAGIDQILGFRQRIATKEEQEVDIEEEITALE 279 (315)
Q Consensus 222 lKrkyk~~qeEN~~i~~tme~~~~~V~aG~~~i~~fr~R~~~~~eq~~dIeeEisaLe 279 (315)
|+|++++.=+.+.+=-.||.....+...|=.+|...=+|+.+... +.+.+|.-|.
T Consensus 12 LRrrl~E~~~q~qaEl~sLrrT~~EL~~G~~KL~~mi~~l~~E~~---~l~~ni~~lk 66 (78)
T 3iv1_A 12 LRWRMKEEMDRAQAELNALKRTEEDLKKGHQKLEEMVTRLDQEVA---EVDKNIELLK 66 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH---HHHHHHHHHH
Confidence 678888777777777778888888899998888888777665542 3555555443
No 27
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=36.84 E-value=47 Score=23.87 Aligned_cols=47 Identities=28% Similarity=0.426 Sum_probs=34.9
Q ss_pred HHHHHHHhHHHHHHHHHHHHHhhcchhhhHhHHHHHHHhhhhhhHHHHHHHHHHhhHHHHHHHHHh
Q 021279 116 EKLRRQLSASLAARKSLEVLCSSLGKEKEIMAGELARKVHELNEMEELINDFKAQNASLLAKVQNC 181 (315)
Q Consensus 116 eklkkeL~ASlaArkSLe~mCSSLGKEKeIMA~ElaRKv~ELnemEeli~DlkAQN~~Ll~K~q~~ 181 (315)
-..|++- --.|||+|= .||...+.++|.=|..|+.+|..|...+...
T Consensus 10 ~~~KR~r-NreAArrsR------------------~RK~~~~~~Le~~v~~L~~eN~~L~~ev~~L 56 (63)
T 2dgc_A 10 AALKRAR-NTEAARRSR------------------ARKLQRMKQLEDKVEELLSKNYHLENEVARL 56 (63)
T ss_dssp -CHHHHH-HHHHHHHHH------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHH-hHHHHHHHH------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444 457788763 4788899999999999999999998776543
No 28
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Probab=36.15 E-value=1.1e+02 Score=29.28 Aligned_cols=34 Identities=15% Similarity=0.338 Sum_probs=22.4
Q ss_pred HHHHHhhhhhhHHHHHHhHHHHHHhHHHHHHHHH
Q 021279 209 SEHLLKSLDGYRSLKKKYKYVKEENTAMRATMEE 242 (315)
Q Consensus 209 SeqLlKSiDgyRSlKrkyk~~qeEN~~i~~tme~ 242 (315)
-++++.--+-+|++..+...++.+--.+...+-+
T Consensus 69 ~~~~~~ld~~~r~~~~~~~~l~~~rn~~sk~i~~ 102 (501)
T 1wle_A 69 LPGIISTWQELRQLREQIRSLEEEKEAVTEAVRA 102 (501)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566666666778877777777776666555443
No 29
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=33.58 E-value=92 Score=29.26 Aligned_cols=76 Identities=17% Similarity=0.323 Sum_probs=43.3
Q ss_pred HHHHHhhhhhhHHHHHHhHHHHHHhHHHHHHHHHH---HHHHHHHHHHHHHHHHhhhhhccccccHHHHHHHHHhhhhhh
Q 021279 209 SEHLLKSLDGYRSLKKKYKYVKEENTAMRATMEEL---GKKVEAGIDQILGFRQRIATKEEQEVDIEEEITALEGMFDSF 285 (315)
Q Consensus 209 SeqLlKSiDgyRSlKrkyk~~qeEN~~i~~tme~~---~~~V~aG~~~i~~fr~R~~~~~eq~~dIeeEisaLe~mfe~~ 285 (315)
-++++.--+-||++..++..++.+-..+...+-.. |.+..+=+.+...+++++. .+|+++.+++.-++.+
T Consensus 30 ~~~~~~l~~~~r~~~~~~~~l~~~~n~~sk~i~~~~~~~~~~~~l~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~ 102 (455)
T 2dq0_A 30 VDEILKLDTEWRTKLKEINRLRHERNKIAVEIGKRRKKGEPVDELLAKSREIVKRIG-------ELENEVEELKKKIDYY 102 (455)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCCTHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHH
Confidence 46677666678888888877777766666554432 1223333444445555443 3555555555555555
Q ss_pred cchhhh
Q 021279 286 NMKIKK 291 (315)
Q Consensus 286 ~mKi~k 291 (315)
-+.|-+
T Consensus 103 ~~~ipN 108 (455)
T 2dq0_A 103 LWRLPN 108 (455)
T ss_dssp HTTSCC
T ss_pred HHhCCC
Confidence 555544
No 30
>3fhn_A Protein transport protein TIP20; TIP20P, vesicle tethering, endoplasmic reticulum, ER-golgi transport, membrane, phosphoprotein; 3.00A {Saccharomyces cerevisiae}
Probab=32.20 E-value=1.2e+02 Score=30.70 Aligned_cols=102 Identities=19% Similarity=0.360 Sum_probs=65.8
Q ss_pred hhhhhhHHHHHHHHHHhhHHHHHHHHHhHHhhhhhcccccccccchhhHHhhHHHHHHHH---hhhhhhHHHHHHhHHHH
Q 021279 154 VHELNEMEELINDFKAQNASLLAKVQNCAAEHKEKKCSAGEIQGNAALQERNKALSEHLL---KSLDGYRSLKKKYKYVK 230 (315)
Q Consensus 154 v~ELnemEeli~DlkAQN~~Ll~K~q~~a~e~k~~~~s~~e~~gN~aLq~RNkaLSeqLl---KSiDgyRSlKrkyk~~q 230 (315)
+..|=+....|.++..|-..|-.+||++.... ..|-.+.++...+.+-++ .||++.-.||.||-+++
T Consensus 9 i~dl~~i~~~i~~~~~~r~~l~~~~~~~~~~~----------~~~~~~~~~~~~~~~~i~~~~~s~~~~~~l~~~yg~l~ 78 (706)
T 3fhn_A 9 IDDLLNINDRIKQVQNERNELASKLQNLKQSL----------ASNDTEVALSEVIAQDIIEVGASVEGLEQLRAKYGDLQ 78 (706)
T ss_dssp -CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHTCTTCCCCHHHHHHHHHSCSSHHHHHHHHHTTCCCH
T ss_pred hHHHHhHHHHHHHHHHHHHHHHHHHHHHhccc----------cccchHHHHHHHHHHHHHhccccHHHHHHHHHHcCCcH
Confidence 44555667789999999999999999988644 233344445555555553 68999999999998876
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccc
Q 021279 231 EENTAMRATMEELGKKVEAGIDQILGFRQRIATKEEQ 267 (315)
Q Consensus 231 eEN~~i~~tme~~~~~V~aG~~~i~~fr~R~~~~~eq 267 (315)
==+. ++..+ +-.+.+..+++++..+..++..--++
T Consensus 79 il~~-l~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~~ 113 (706)
T 3fhn_A 79 ILNK-LEKVA-VQQTQMQAGVDKLDSFERQLDELAEQ 113 (706)
T ss_dssp HHHH-HHHHH-HHHHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHH-HHHHH-HHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 3221 22222 22455667777777777766633333
No 31
>2l7b_A Apolipoprotein E, APO-E; lipid transport, atherosclerosis, alzheime disease; NMR {Homo sapiens}
Probab=32.08 E-value=1.1e+02 Score=27.74 Aligned_cols=28 Identities=11% Similarity=0.345 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHHHHH-HHHHHHhhh
Q 021279 235 AMRATMEELGKKVEAGIDQ-ILGFRQRIA 262 (315)
Q Consensus 235 ~i~~tme~~~~~V~aG~~~-i~~fr~R~~ 262 (315)
.++..|.-|+.++-.++++ +..||.+++
T Consensus 162 eLr~~L~py~eeLr~kl~~~veelr~~L~ 190 (307)
T 2l7b_A 162 DLQKRLAVYQAGAREGAERGLSAIRERLG 190 (307)
T ss_dssp HHHHHHHHHTSCCSSHHHHHHHHHHHHCS
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHhh
Confidence 6777888888888777777 777777764
No 32
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=31.99 E-value=2.3e+02 Score=23.96 Aligned_cols=128 Identities=13% Similarity=0.090 Sum_probs=66.5
Q ss_pred HHHHHhHHHHHHHHHHHHHhhcchhhhHhHHHHHHHhhhhhhHHHHHHHHHHhhHHHHHHHHHhHHhhhhhccccccccc
Q 021279 118 LRRQLSASLAARKSLEVLCSSLGKEKEIMAGELARKVHELNEMEELINDFKAQNASLLAKVQNCAAEHKEKKCSAGEIQG 197 (315)
Q Consensus 118 lkkeL~ASlaArkSLe~mCSSLGKEKeIMA~ElaRKv~ELnemEeli~DlkAQN~~Ll~K~q~~a~e~k~~~~s~~e~~g 197 (315)
+-.++..--..++.|..--..|-.+..-+...+...-.++..++.-+..+..+-+.+-+++........ + +.+
T Consensus 16 lD~~i~~l~~~~~~lp~el~~le~~~~~l~~~~~~~~~~l~d~~~~~~~~e~~i~~~~~ri~~~~~~l~----~---v~~ 88 (256)
T 3na7_A 16 LDKEIDSLEPLIREKRKDLDKALNDKEAKNKAILNLEEEKLALKLQVSKNEQTLQDTNAKIASIQKKMS----E---IKS 88 (256)
T ss_dssp HHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----H---CSS
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----c---cCC
Confidence 333444444445555444445555555556666666666666666666666555555555544433222 1 112
Q ss_pred ch----------hhHHhhHHHHHHHHhhhhhhHHHHHHhHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 021279 198 NA----------ALQERNKALSEHLLKSLDGYRSLKKKYKYVKEENTAMRATMEELGKKVEAGID 252 (315)
Q Consensus 198 N~----------aLq~RNkaLSeqLlKSiDgyRSlKrkyk~~qeEN~~i~~tme~~~~~V~aG~~ 252 (315)
|- .+..|...|-+.++.-.+-.-.++..+..++++=..+...++....++++.+.
T Consensus 89 ~kE~~aL~kEie~~~~~i~~lE~eile~~e~ie~~~~~l~~~~~~l~~~~~~l~~~~~~~~~~~~ 153 (256)
T 3na7_A 89 ERELRSLNIEEDIAKERSNQANREIENLQNEIKRKSEKQEDLKKEMLELEKLALELESLVENEVK 153 (256)
T ss_dssp SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22 33455666666666666655555555555555555555555554444444443
No 33
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=31.17 E-value=2.6e+02 Score=24.21 Aligned_cols=91 Identities=18% Similarity=0.226 Sum_probs=0.0
Q ss_pred hhhhhHHHHHHHHHHhhHHHHHHHHHhHHhhhhhcccccccccchhhHHhhHHHHHHHHhhhhhhHHHHHHhHHHHHHh-
Q 021279 155 HELNEMEELINDFKAQNASLLAKVQNCAAEHKEKKCSAGEIQGNAALQERNKALSEHLLKSLDGYRSLKKKYKYVKEEN- 233 (315)
Q Consensus 155 ~ELnemEeli~DlkAQN~~Ll~K~q~~a~e~k~~~~s~~e~~gN~aLq~RNkaLSeqLlKSiDgyRSlKrkyk~~qeEN- 233 (315)
.+|..+|-=+.+|+.+|..|-.-+.....+.+ +-..-..----.|-..+..--+..++|+.++.++.-.|
T Consensus 49 ~eL~~~Ek~~~~L~~~~~~L~~E~e~~k~K~~---------~~~~e~~~~~~~Lq~el~~l~~~~~~l~~~ireLEq~ND 119 (189)
T 2v71_A 49 AQLVQAEQRNRDLQADNQRLKYEVEALKEKLE---------HQYAQSYKQVSVLEDDLSQTRAIKEQLHKYVRELEQAND 119 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q ss_pred ------HHHHHHHHHHHHHHHHHHHHH
Q 021279 234 ------TAMRATMEELGKKVEAGIDQI 254 (315)
Q Consensus 234 ------~~i~~tme~~~~~V~aG~~~i 254 (315)
|....++++++...+..|+|+
T Consensus 120 dlEr~~R~~~~SleD~e~kln~aiEr~ 146 (189)
T 2v71_A 120 DLERAKRATIMSLEDFEQRLNQAIERN 146 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHH
No 34
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=30.71 E-value=83 Score=21.84 Aligned_cols=32 Identities=16% Similarity=0.202 Sum_probs=26.4
Q ss_pred HHhhhhhhHHHHHHHHHHhhHHHHHHHHHhHH
Q 021279 152 RKVHELNEMEELINDFKAQNASLLAKVQNCAA 183 (315)
Q Consensus 152 RKv~ELnemEeli~DlkAQN~~Ll~K~q~~a~ 183 (315)
||-+...++|.=+..|..+|..|.+.|+..-.
T Consensus 19 rKk~~~~~Le~~~~~L~~~n~~L~~~i~~L~~ 50 (61)
T 1t2k_D 19 KRKVWVQSLEKKAEDLSSLNGQLQSEVTLLRN 50 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57778888999999999999999888876544
No 35
>1s94_A S-syntaxin; three helix bundle, structural plasticity, endocytosis-exocy complex; 3.34A {Loligo pealei} SCOP: a.47.2.1
Probab=30.13 E-value=1.4e+02 Score=23.74 Aligned_cols=68 Identities=19% Similarity=0.364 Sum_probs=39.4
Q ss_pred hhHHHHHHHHHHhhHHHHHHHHHhHHhhhhhcccccccccchhhHHh---hHHHHHHHHhhhhhhHHHHHHhHH
Q 021279 158 NEMEELINDFKAQNASLLAKVQNCAAEHKEKKCSAGEIQGNAALQER---NKALSEHLLKSLDGYRSLKKKYKY 228 (315)
Q Consensus 158 nemEeli~DlkAQN~~Ll~K~q~~a~e~k~~~~s~~e~~gN~aLq~R---NkaLSeqLlKSiDgyRSlKrkyk~ 228 (315)
.+|+.++.+.+.....+-.+|++....-.+. .+...+...++-| -.+|+-+|...+..|+.+...|++
T Consensus 81 ~~le~l~~~i~~~a~~ik~~Lk~l~~~~~~~---~~~~~~s~~~Rir~~q~~~L~~kf~~~m~~yq~~q~~y~~ 151 (180)
T 1s94_A 81 EELEELMTDIKRTANKVRGKLKTIELNIEQE---EHSNKSSADLRIRKTQYSTISRKFVEVMSDYNTTQIDYRD 151 (180)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT---C-----CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh---hccCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567777777777777767776655432211 1111223333222 246888888888888888777764
No 36
>3f1i_H Hepatocyte growth factor-regulated tyrosine kinas substrate; HGS, ESCRT, ubiquitin, MVB, endosome, membrane, metal- phosphoprotein, protein transport, transport; 2.30A {Homo sapiens}
Probab=29.39 E-value=2.2e+02 Score=22.91 Aligned_cols=73 Identities=11% Similarity=0.248 Sum_probs=53.4
Q ss_pred HHHHHHHHHHhhHHHHHHHHHhHHhhhhhcccccccccchhhHHhhHHH---HHHHHhhhhhhHHHHHHhHHHHHHhHHH
Q 021279 160 MEELINDFKAQNASLLAKVQNCAAEHKEKKCSAGEIQGNAALQERNKAL---SEHLLKSLDGYRSLKKKYKYVKEENTAM 236 (315)
Q Consensus 160 mEeli~DlkAQN~~Ll~K~q~~a~e~k~~~~s~~e~~gN~aLq~RNkaL---SeqLlKSiDgyRSlKrkyk~~qeEN~~i 236 (315)
.|||++-|++|-+.+..+++.-...+ ..+-+..+.|.=--.| -.|||+-|----..+..|.-+|+-=..|
T Consensus 2 ~~ef~~~l~~sv~if~NRmksn~~RG-------rsi~nDssVQsLF~~lt~MH~~Ll~~i~~~ee~R~~yE~LQDkL~qi 74 (98)
T 3f1i_H 2 HEQFLKALQNAVTTFVNRMKSNHMRG-------RSITNDSAVLSLFQSINGMHPQLLELLNQLDERRLYYEGLQDKLAQI 74 (98)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHT-------CCGGGCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCC-------CCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 68999999999999999999877644 4455666666654444 4688888876666666777777666666
Q ss_pred HHH
Q 021279 237 RAT 239 (315)
Q Consensus 237 ~~t 239 (315)
+.+
T Consensus 75 ~eA 77 (98)
T 3f1i_H 75 RDA 77 (98)
T ss_dssp HHH
T ss_pred HHH
Confidence 543
No 37
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A
Probab=29.05 E-value=88 Score=30.21 Aligned_cols=82 Identities=9% Similarity=0.116 Sum_probs=42.9
Q ss_pred hHHhhHH--HHHHHHhhhhhhHHHHHHhHHHHHHhHHHHHHHHHH---HHHHHHHHHHHHHHHHhhhhhccccccHHHHH
Q 021279 201 LQERNKA--LSEHLLKSLDGYRSLKKKYKYVKEENTAMRATMEEL---GKKVEAGIDQILGFRQRIATKEEQEVDIEEEI 275 (315)
Q Consensus 201 Lq~RNka--LSeqLlKSiDgyRSlKrkyk~~qeEN~~i~~tme~~---~~~V~aG~~~i~~fr~R~~~~~eq~~dIeeEi 275 (315)
|..|+.. +-++++.--+-+|++..++..++.+-..+...+-++ |.++.+-+.+...+++++. .+|+++
T Consensus 22 ~~~R~~~~~~~~~~~~ld~~~r~~~~~~~~l~~~rn~~sk~i~~~k~~~~~~~~l~~~~~~l~~~i~-------~le~~~ 94 (485)
T 3qne_A 22 QKKRGDSVELVDEIIAEYKEWVKLRFDLDEHNKKLNSVQKEIGKRFKAKEDAKDLIAEKEKLSNEKK-------EIIEKE 94 (485)
T ss_dssp HHHHTCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHH-------HHHHHH
T ss_pred HHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHH-------HHHHHH
Confidence 4445432 346676666677888887777777655555443322 1223333444444444443 344555
Q ss_pred HHHHhhhhhhcchh
Q 021279 276 TALEGMFDSFNMKI 289 (315)
Q Consensus 276 saLe~mfe~~~mKi 289 (315)
.++|.=++.+-+.|
T Consensus 95 ~~~~~~~~~~l~~i 108 (485)
T 3qne_A 95 AEADKNLRSKINQV 108 (485)
T ss_dssp HHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHhC
Confidence 55554444444444
No 38
>2hg7_A Phage-like element PBSX protein XKDW; dimer, GFT structural genomics, PSI, protein structure initiative; NMR {Bacillus subtilis} SCOP: d.186.2.1
Probab=28.83 E-value=15 Score=30.26 Aligned_cols=49 Identities=37% Similarity=0.350 Sum_probs=7.7
Q ss_pred HHhhhhcCCCCCCCCCCcCCCCCCchHHHHHHHHHhHHHHHHHHHHHHHhhcchhh
Q 021279 88 ELRRCNTDLRPNRAPRDKKLCEPITDDKEKLRRQLSASLAARKSLEVLCSSLGKEK 143 (315)
Q Consensus 88 eLRRCnTdLrp~~~P~DkKp~e~~~dekeklkkeL~ASlaArkSLe~mCSSLGKEK 143 (315)
||+--...+--+ |+-.++|..+-|-.||+..--|||-||-.|-.||.|-
T Consensus 45 eL~~wwee~q~n-------p~yepP~q~~~laqels~eklarkqleeln~~Lg~El 93 (110)
T 2hg7_A 45 ELETWWEELQKN-------PPYEPPDQVELLAQELSQEKLARKQLEELNKTLGNEL 93 (110)
T ss_dssp HHHHHHHHHHHS-------CCCC---------------------------------
T ss_pred HHHHHHHHHHhC-------CCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666555554433 3344477888999999999999999999999999884
No 39
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=28.78 E-value=99 Score=21.77 Aligned_cols=33 Identities=9% Similarity=0.235 Sum_probs=26.7
Q ss_pred HHHhhhhhhHHHHHHHHHHhhHHHHHHHHHhHH
Q 021279 151 ARKVHELNEMEELINDFKAQNASLLAKVQNCAA 183 (315)
Q Consensus 151 aRKv~ELnemEeli~DlkAQN~~Ll~K~q~~a~ 183 (315)
.||-..+.+++.=|..|..+|..|-+.+...-.
T Consensus 19 ~rKk~~~~~Le~~v~~L~~~n~~L~~ei~~L~~ 51 (63)
T 2wt7_A 19 NRRRELTDTLQAETDQLEDEKSALQTEIANLLK 51 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 477888889999999999999999888765433
No 40
>1ez3_A Syntaxin-1A; three helix bundle, endocytosis/exocytosis complex; 1.90A {Rattus norvegicus} SCOP: a.47.2.1 PDB: 1br0_A 3lg7_A*
Probab=28.64 E-value=1.8e+02 Score=21.52 Aligned_cols=67 Identities=22% Similarity=0.421 Sum_probs=38.2
Q ss_pred hHHHHHHHHHHhhHHHHHHHHHhHHhhhhhcccccccccchhhHHhh---HHHHHHHHhhhhhhHHHHHHhHH
Q 021279 159 EMEELINDFKAQNASLLAKVQNCAAEHKEKKCSAGEIQGNAALQERN---KALSEHLLKSLDGYRSLKKKYKY 228 (315)
Q Consensus 159 emEeli~DlkAQN~~Ll~K~q~~a~e~k~~~~s~~e~~gN~aLq~RN---kaLSeqLlKSiDgyRSlKrkyk~ 228 (315)
+|+.++.+.+.....+-.+|+..-....+. .+...+.+.++-|. .+|+-+|...+..|+..--.|++
T Consensus 51 ~l~~l~~~i~~~a~~ik~~Lk~l~~~~~~~---~~~~~~s~~~Rir~~q~~~L~~kf~e~m~~y~~~q~~yre 120 (127)
T 1ez3_A 51 ELEELMSDIKKTANKVRSKLKSIEQSIEQE---EGLNRSSADLRIRKTQHSTLSRKFVEVMSEYNATQSDYRE 120 (127)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HTTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---cccCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556666666666666666666544322110 11112333343322 47888888888888887766664
No 41
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=28.64 E-value=1e+02 Score=21.67 Aligned_cols=31 Identities=26% Similarity=0.389 Sum_probs=23.0
Q ss_pred HHHHHHHhhhhhhHHHHHHHHHHhhHHHHHHHHH
Q 021279 147 AGELARKVHELNEMEELINDFKAQNASLLAKVQN 180 (315)
Q Consensus 147 A~ElaRKv~ELnemEeli~DlkAQN~~Ll~K~q~ 180 (315)
+.+|..+. +|+|+=||-|.+.|.||-..|+|
T Consensus 12 ~k~le~~n---aeLEervstLq~EN~mLRqvl~n 42 (42)
T 2oqq_A 12 VKDLENKN---SELEERLSTLQNENQMLRHILKN 42 (42)
T ss_dssp HHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHH---HHHHHHHHHHHHhHHHHHHHhcC
Confidence 44444443 56688999999999999888764
No 42
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=28.43 E-value=36 Score=27.19 Aligned_cols=75 Identities=15% Similarity=0.224 Sum_probs=52.1
Q ss_pred hhhHHHHHHhHHHHHHhHHHHHHHHHHHHHHHH----HH-H----HHHHHHHhhhhhccccccHHHHHHHHHhhhhhhcc
Q 021279 217 DGYRSLKKKYKYVKEENTAMRATMEELGKKVEA----GI-D----QILGFRQRIATKEEQEVDIEEEITALEGMFDSFNM 287 (315)
Q Consensus 217 DgyRSlKrkyk~~qeEN~~i~~tme~~~~~V~a----G~-~----~i~~fr~R~~~~~eq~~dIeeEisaLe~mfe~~~m 287 (315)
.+|.+|++++....-||..++.-.+.+..++.- |- | +|..|..--+....| ..+++|..|..=.+++..
T Consensus 12 e~~~~lr~ei~~Le~E~~rLr~~~~~LE~~Le~~~l~Gd~~~~~TKVlH~~~NPa~~a~~--~~~~~~e~Lq~E~erLr~ 89 (100)
T 1go4_E 12 EEADTLRLKVEELEGERSRLEEEKRMLEAQLERRALQGDYDQSRTKVLHMSLNPTSVARQ--RLREDHSQLQAECERLRG 89 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSCCCTTTEEEEEESSCHHHHHHH--HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCccCeeeeecCChHHHHHH--HHHHHHHHHHHHHHHHHH
Confidence 489999999999999999999999988887765 32 2 244443322222222 367788888777777776
Q ss_pred hhhhhc
Q 021279 288 KIKKHI 293 (315)
Q Consensus 288 Ki~kh~ 293 (315)
++.+-.
T Consensus 90 ~v~~lE 95 (100)
T 1go4_E 90 LLRAME 95 (100)
T ss_dssp HHTTCC
T ss_pred HHHHHh
Confidence 665543
No 43
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}
Probab=28.32 E-value=1.6e+02 Score=22.03 Aligned_cols=60 Identities=12% Similarity=0.329 Sum_probs=33.2
Q ss_pred HHHHHHhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccccccHHHHHHHHHhhhhhhc
Q 021279 220 RSLKKKYKYVKEENTAMRATMEELGKKVEAGIDQILGFRQRIATKEEQEVDIEEEITALEGMFDSFN 286 (315)
Q Consensus 220 RSlKrkyk~~qeEN~~i~~tme~~~~~V~aG~~~i~~fr~R~~~~~eq~~dIeeEisaLe~mfe~~~ 286 (315)
+.|++++..+.-+|.++..-++-+...| ..||.+.-..-..--+.|.+|..|-+..|...
T Consensus 3 ~eLr~qi~~l~~e~~~l~~e~dn~~~~~-------edfk~KyE~E~~~R~~~E~d~~~LrkdvD~a~ 62 (86)
T 3swk_A 3 RELRRQVDQLTNDKARVEVERDNLAEDI-------MRLREKLQEEMLQREEAENTLQSFRQDVDNAS 62 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 5677788888888877765555443322 23444433222222246666666666655543
No 44
>2j5u_A MREC protein; bacterial cell shape determining protein MREC, cell shape regulation; 2.5A {Listeria monocytogenes}
Probab=28.27 E-value=33 Score=29.78 Aligned_cols=23 Identities=17% Similarity=0.403 Sum_probs=16.0
Q ss_pred hHHHHHHhHHHHHHhHHHHHHHH
Q 021279 219 YRSLKKKYKYVKEENTAMRATME 241 (315)
Q Consensus 219 yRSlKrkyk~~qeEN~~i~~tme 241 (315)
++....+|..++.||.+++..|.
T Consensus 38 l~~~~~~~~~l~~En~rLr~lL~ 60 (255)
T 2j5u_A 38 LAQLESEVADLKKENKDLKESLD 60 (255)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHhc
Confidence 44455567788888888887654
No 45
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=28.16 E-value=3.2e+02 Score=24.24 Aligned_cols=69 Identities=19% Similarity=0.316 Sum_probs=42.0
Q ss_pred hhHHHHHHHHhhhhhhHHHHHHhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccccccHHHHHHHHHhhhh
Q 021279 204 RNKALSEHLLKSLDGYRSLKKKYKYVKEENTAMRATMEELGKKVEAGIDQILGFRQRIATKEEQEVDIEEEITALEGMFD 283 (315)
Q Consensus 204 RNkaLSeqLlKSiDgyRSlKrkyk~~qeEN~~i~~tme~~~~~V~aG~~~i~~fr~R~~~~~eq~~dIeeEisaLe~mfe 283 (315)
.+..|..||-..=+++-.+. +.+---|.-.-+.|+.+..+|.-|.-||.. .|.||..|+|-++
T Consensus 398 ~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~ 460 (471)
T 3mq9_A 398 VTHLLQQELTEAQKGFQDVE---AQAATANHTVMALMASLDAEKAQGQKKVEE--------------LEGEITTLNHKLQ 460 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHH---HHhhhcchhHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHH
Confidence 34444444444434333332 344556777888888999999888755432 5777888777666
Q ss_pred hhcchh
Q 021279 284 SFNMKI 289 (315)
Q Consensus 284 ~~~mKi 289 (315)
...-.|
T Consensus 461 ~~~~~~ 466 (471)
T 3mq9_A 461 DASAEV 466 (471)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 554433
No 46
>1ses_A Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A {Thermus thermophilus} SCOP: a.2.7.1 d.104.1.1 PDB: 1ser_A* 1set_A* 1sry_A
Probab=26.54 E-value=71 Score=29.58 Aligned_cols=75 Identities=19% Similarity=0.219 Sum_probs=37.8
Q ss_pred HHHHhhhhhhHHHHHHhHHHHHHhHHHHHHHHH-HHHHHHHHHHHHHHHHHhhhhhccccccHHHHHHHHHhhhhhhcch
Q 021279 210 EHLLKSLDGYRSLKKKYKYVKEENTAMRATMEE-LGKKVEAGIDQILGFRQRIATKEEQEVDIEEEITALEGMFDSFNMK 288 (315)
Q Consensus 210 eqLlKSiDgyRSlKrkyk~~qeEN~~i~~tme~-~~~~V~aG~~~i~~fr~R~~~~~eq~~dIeeEisaLe~mfe~~~mK 288 (315)
++++.--+-+|++..+...++.+-..+...+-. -|.+..+=+.+...+++++. .++++..+++.=++.+-+.
T Consensus 28 ~~~~~~~~~~r~~~~~~~~l~~~~n~~sk~i~~~~~~~~~~l~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~ 100 (421)
T 1ses_A 28 EALLALDREVQELKKRLQEVQTERNQVAKRVPKAPPEEKEALIARGKALGEEAK-------RLEEALREKEARLEALLLQ 100 (421)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHh
Confidence 555555556777777777766665555443321 01222222333444444333 4555555555555555555
Q ss_pred hhh
Q 021279 289 IKK 291 (315)
Q Consensus 289 i~k 291 (315)
|-+
T Consensus 101 ipN 103 (421)
T 1ses_A 101 VPL 103 (421)
T ss_dssp CCC
T ss_pred CCC
Confidence 443
No 47
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=26.44 E-value=66 Score=29.96 Aligned_cols=38 Identities=11% Similarity=0.086 Sum_probs=15.5
Q ss_pred chhhhHhHHHHHHHhhhhhhHHHHHHHHHHhhHHHHHH
Q 021279 140 GKEKEIMAGELARKVHELNEMEELINDFKAQNASLLAK 177 (315)
Q Consensus 140 GKEKeIMA~ElaRKv~ELnemEeli~DlkAQN~~Ll~K 177 (315)
|.|..-+-.||......+.++++-+..+.+.++.+-++
T Consensus 2 ~~~~~~l~~el~~~~~~~~~l~~~~~~~~~~~~~~~~~ 39 (412)
T 3u06_A 2 GSMHAALSTEVVHLRQRTEELLRCNEQQAAELETCKEQ 39 (412)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333444444444444444444444444444443333
No 48
>2dq3_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, nationa on protein structural and functional analyses; HET: SSA; 3.00A {Aquifex aeolicus}
Probab=25.65 E-value=44 Score=30.97 Aligned_cols=76 Identities=17% Similarity=0.296 Sum_probs=40.5
Q ss_pred HHHHHhhhhhhHHHHHHhHHHHHHhHHHHHHHHHH---HHHHHHHHHHHHHHHHhhhhhccccccHHHHHHHHHhhhhhh
Q 021279 209 SEHLLKSLDGYRSLKKKYKYVKEENTAMRATMEEL---GKKVEAGIDQILGFRQRIATKEEQEVDIEEEITALEGMFDSF 285 (315)
Q Consensus 209 SeqLlKSiDgyRSlKrkyk~~qeEN~~i~~tme~~---~~~V~aG~~~i~~fr~R~~~~~eq~~dIeeEisaLe~mfe~~ 285 (315)
-++++.--+-||++..++..++.+-..+...+-.. |.+..+=+.+...+++++. .+++++.+++.=++.+
T Consensus 29 ~~~~~~~~~~~r~~~~~~~~l~~~~n~~sk~i~~~~~~~~~~~~l~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~ 101 (425)
T 2dq3_A 29 VDKVLELDKRRREIIKRLEALRSERNKLSKEIGKLKREGKDTTEIQNRVKELKEEID-------RLEEELRKVEEELKNT 101 (425)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTGGGSSCSCTTTSTTHHHHHHHHHH-------HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCccHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHH
Confidence 46676666677777777777776665555443321 1122222334444444443 3555555555555555
Q ss_pred cchhhh
Q 021279 286 NMKIKK 291 (315)
Q Consensus 286 ~mKi~k 291 (315)
-+.|-+
T Consensus 102 ~~~ipN 107 (425)
T 2dq3_A 102 LLWIPN 107 (425)
T ss_dssp HHTSCC
T ss_pred HHhCCC
Confidence 555544
No 49
>1m1j_A Fibrinogen alpha subunit; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: h.1.8.1 PDB: 1ei3_A
Probab=24.82 E-value=4.3e+02 Score=26.31 Aligned_cols=83 Identities=19% Similarity=0.252 Sum_probs=49.6
Q ss_pred cccccccchhhHHhhHH-HHHHHHhhhhhh---------------HHHHHHhHHHHHH-------hHHHHHHHHHHHHHH
Q 021279 191 SAGEIQGNAALQERNKA-LSEHLLKSLDGY---------------RSLKKKYKYVKEE-------NTAMRATMEELGKKV 247 (315)
Q Consensus 191 s~~e~~gN~aLq~RNka-LSeqLlKSiDgy---------------RSlKrkyk~~qeE-------N~~i~~tme~~~~~V 247 (315)
+|-.++|...=|+||=. ==+.|-.+|+.| -.||.+.+.+++- +..|+.-.+.|.+.|
T Consensus 48 SGCrLqglL~kqerdv~~rI~kLkn~L~~~s~s~~~s~~y~~~~~~~lk~~~~q~~dndn~~~e~S~eLe~ri~yIK~kV 127 (491)
T 1m1j_A 48 SGCRMQGIIDDTDQNYSQRIDNIRQQLADSQNKYKTSNRVIVETINILKPGLEGAQQLDENYGHVSTELRRRIVTLKQRV 127 (491)
T ss_dssp CSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CccchhhHHHHhhhhHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHH
Confidence 34455666666666522 123333344333 3455555555432 346677777788899
Q ss_pred HHHHHHHHHHHHhhhhhccccccHHHHHHHHHh
Q 021279 248 EAGIDQILGFRQRIATKEEQEVDIEEEITALEG 280 (315)
Q Consensus 248 ~aG~~~i~~fr~R~~~~~eq~~dIeeEisaLe~ 280 (315)
+..|.+|+-+|..|. |+-.+|..||-
T Consensus 128 d~qi~~IrvLq~~l~-------~q~skIQRLE~ 153 (491)
T 1m1j_A 128 ATQVNRIKALQNSIQ-------EQVVEMKRLEV 153 (491)
T ss_dssp HHHHHHHHHHHHHHH-------HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH-------HHHHHHHHHHH
Confidence 999988999988443 34556666664
No 50
>2oto_A M protein; helical coiled coil, fibrinogen-binding, virulence factor, S active protein, toxin; 3.04A {Streptococcus pyogenes serotype M1} PDB: 2xny_M
Probab=24.09 E-value=1.7e+02 Score=23.27 Aligned_cols=9 Identities=22% Similarity=0.320 Sum_probs=3.7
Q ss_pred HHHhhHHHH
Q 021279 167 FKAQNASLL 175 (315)
Q Consensus 167 lkAQN~~Ll 175 (315)
|+.+|+.|.
T Consensus 34 Lk~e~e~l~ 42 (155)
T 2oto_A 34 LKARLENAM 42 (155)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 444444333
No 51
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=23.53 E-value=2.9e+02 Score=22.29 Aligned_cols=9 Identities=22% Similarity=0.102 Sum_probs=3.3
Q ss_pred hHHHHHHhH
Q 021279 219 YRSLKKKYK 227 (315)
Q Consensus 219 yRSlKrkyk 227 (315)
|..|...+.
T Consensus 77 ~~~L~~~l~ 85 (138)
T 3hnw_A 77 ADSLSLDIE 85 (138)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 333333333
No 52
>4emc_A Monopolin complex subunit CSM1; RWD domain, kinetochore-binding, kinetoch replication-replication complex; 3.05A {Saccharomyces cerevisiae} PDB: 3n7n_A 3n4x_A
Probab=23.31 E-value=1.9e+02 Score=25.49 Aligned_cols=67 Identities=12% Similarity=0.284 Sum_probs=41.6
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccccccHHHHHHHHHhhhhhh-cchhhhhccc
Q 021279 229 VKEENTAMRATMEELGKKVEAGIDQILGFRQRIATKEEQEVDIEEEITALEGMFDSF-NMKIKKHIQN 295 (315)
Q Consensus 229 ~qeEN~~i~~tme~~~~~V~aG~~~i~~fr~R~~~~~eq~~dIeeEisaLe~mfe~~-~mKi~kh~qk 295 (315)
++-||+.+...++.-..++.+=-.||.+.++.+...+++--.-.|.|.-.+.||+-+ |+.|.++.+.
T Consensus 25 L~~En~~L~~ql~~k~~ei~~L~~ql~sl~~~~~~~~~~~~~~~e~i~i~~DL~e~LTGl~V~~~~ed 92 (190)
T 4emc_A 25 LVNENFVLSEKLDTKATEIKQLQKQIDSLNAQVKELKTQTSQQAENSEVIKDLYEYLCNVRVHKSYED 92 (190)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSEECCCCCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHhhhHHHHHHHHccCcEEEEEEEc
Confidence 455666666666655555555555566666655554444334567788888888765 7777776544
No 53
>1u5t_A Appears to BE functionally related to SNF7; SNF8P; ESCRT, endosomal, trafficking, protein complex, transport protein; 3.60A {Saccharomyces cerevisiae} SCOP: a.4.5.54 a.4.5.54 PDB: 1w7p_A
Probab=22.75 E-value=1.5e+02 Score=26.15 Aligned_cols=105 Identities=18% Similarity=0.254 Sum_probs=61.6
Q ss_pred HHHHHHHHHhhHHHHHHHHHhHHhhhhhcccccccccchhhHHhhHHHHHH--------------HHhhhhhhHHHHHHh
Q 021279 161 EELINDFKAQNASLLAKVQNCAAEHKEKKCSAGEIQGNAALQERNKALSEH--------------LLKSLDGYRSLKKKY 226 (315)
Q Consensus 161 Eeli~DlkAQN~~Ll~K~q~~a~e~k~~~~s~~e~~gN~aLq~RNkaLSeq--------------LlKSiDgyRSlKrky 226 (315)
++-+..++.|-+..-..|++||.+|+ .|+..|..++.+=+.+--- ++-+=|=|-.|=.+.
T Consensus 26 ~~~~~~l~~Ql~~F~~~L~~FA~kHk------~eI~~dp~fR~~F~~mc~siGVDPLa~s~kg~~~lg~gdfy~eLavqI 99 (233)
T 1u5t_A 26 EKQSVELRDQLMVFQERLVEFAKKHN------SELQASPEFRSKFMHMCSSIGIDPLSLFDRDKHLFTVNDFYYEVCLKV 99 (233)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCT------TTTTTCHHHHHHHHHHHHHHTCCHHHHTTSSGGGTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhH------hhcccCHHHHHHHHHHHHHcCCCCCccCCccccccCcchHHHHHHHHH
Confidence 34456677888888889999999998 7888888776555543222 222334444444443
Q ss_pred HHH----HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh-ccccccHHHHHHHHHhhhhhhcc
Q 021279 227 KYV----KEENTAMRATMEELGKKVEAGIDQILGFRQRIATK-EEQEVDIEEEITALEGMFDSFNM 287 (315)
Q Consensus 227 k~~----qeEN~~i~~tme~~~~~V~aG~~~i~~fr~R~~~~-~eq~~dIeeEisaLe~mfe~~~m 287 (315)
-++ .++|+ |+=-+...+.|+.+. .=.+-||..=|..|+.+ .+|.+
T Consensus 100 vEvC~~tr~~nG---------------Gli~l~el~~~~~r~~~IS~dDi~rAik~L~~L-~gf~v 149 (233)
T 1u5t_A 100 IEICRQTKDMNG---------------GVISFQELEKVHFRKLNVGLDDLEKSIDMLKSL-ECFEI 149 (233)
T ss_dssp HHHHHHHTTTSS---------------SCEEHHHHHHTTTTTTTCCHHHHHHHHHHHTTT-CCCCE
T ss_pred HHHHHHHHHhcC---------------CeeEHHHHHHHHHhhcCCCHHHHHHHHHHhhhc-cCeEE
Confidence 332 22333 332233334444321 11223899999999998 77654
No 54
>2js5_A Uncharacterized protein; homodimer, protein structure, spectroscopy, structural genomics, PSI-2, protein structure initiative; NMR {Methylococcus capsulatus}
Probab=22.10 E-value=1.3e+02 Score=22.83 Aligned_cols=43 Identities=21% Similarity=0.427 Sum_probs=36.0
Q ss_pred HHHHHHhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 021279 220 RSLKKKYKYVKEENTAMRATMEELGKKVEAGIDQILGFRQRIA 262 (315)
Q Consensus 220 RSlKrkyk~~qeEN~~i~~tme~~~~~V~aG~~~i~~fr~R~~ 262 (315)
-.||.++|..+---.++-+-|-++.+++-.|.++|-..-++..
T Consensus 6 ~eLkkevkKL~~~A~q~kmdLHDLaEdLP~~w~~i~~vA~~ty 48 (71)
T 2js5_A 6 EELKAKLKKLNAQATALKMDLHDLAEDLPTGWNRIMEVAEKTY 48 (71)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHSTTTSGGGHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHhccchhhHHHHHHHHHHHH
Confidence 3578888888888888889999999999999999988877543
No 55
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=22.09 E-value=1.4e+02 Score=21.10 Aligned_cols=32 Identities=16% Similarity=0.249 Sum_probs=24.5
Q ss_pred HHhhhhhhHHHHHHHHHHhhHHHHHHHHHhHH
Q 021279 152 RKVHELNEMEELINDFKAQNASLLAKVQNCAA 183 (315)
Q Consensus 152 RKv~ELnemEeli~DlkAQN~~Ll~K~q~~a~ 183 (315)
+|-.+..+++.=+.+|+.+|..|-.++...-.
T Consensus 20 KKk~~~~~le~~~~~L~~~N~~L~~~i~~L~~ 51 (63)
T 1ci6_A 20 KKRAEQEALTGECKELEKKNEALKERADSLAK 51 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46677788888888888888888887765544
No 56
>1u4q_A Spectrin alpha chain, brain; alpha spectrin, three repeats of spectrin, alpha-helical linker region, 3-helix coiled-coil, structural protein; 2.50A {Gallus gallus} SCOP: a.7.1.1 a.7.1.1 a.7.1.1
Probab=21.87 E-value=3.3e+02 Score=22.20 Aligned_cols=70 Identities=11% Similarity=0.220 Sum_probs=39.3
Q ss_pred hhhhhhHHHHHHhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh-hccccccHHHHHHHHHhhhhhhcchhhhh
Q 021279 214 KSLDGYRSLKKKYKYVKEENTAMRATMEELGKKVEAGIDQILGFRQRIAT-KEEQEVDIEEEITALEGMFDSFNMKIKKH 292 (315)
Q Consensus 214 KSiDgyRSlKrkyk~~qeEN~~i~~tme~~~~~V~aG~~~i~~fr~R~~~-~~eq~~dIeeEisaLe~mfe~~~mKi~kh 292 (315)
+++++-.+|-++++..+.+=..-..+++.+. ++ =+.+.. +...+..|...+..|..-|+.|.-.+...
T Consensus 245 ~~~~~~~~ll~~h~~~~~el~~~~~~v~~l~-------~~----~~~L~~~~~~~~~~i~~~~~~l~~rw~~l~~~~~~R 313 (322)
T 1u4q_A 245 DTLAAIQGLLKKHEAFETDFTVHKDRVNDVC-------AN----GEDLIKKNNHHVENITAKMKGLKGKVSDLEKAAAQR 313 (322)
T ss_dssp TSHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HH----HHHHHHTTCTTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HH----HHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556667777777776665333333332221 11 122222 22234468889999999999887666554
Q ss_pred cc
Q 021279 293 IQ 294 (315)
Q Consensus 293 ~q 294 (315)
.+
T Consensus 314 ~~ 315 (322)
T 1u4q_A 314 KA 315 (322)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 57
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=20.77 E-value=3.4e+02 Score=21.94 Aligned_cols=23 Identities=9% Similarity=0.225 Sum_probs=12.8
Q ss_pred hHHHHHHhHHHHHHhHHHHHHHH
Q 021279 219 YRSLKKKYKYVKEENTAMRATME 241 (315)
Q Consensus 219 yRSlKrkyk~~qeEN~~i~~tme 241 (315)
+..|++++...++++..+.+.|+
T Consensus 112 ~~~l~~~~~~l~~~~~~le~~~~ 134 (138)
T 3hnw_A 112 IKELKSEINKYQKNIVKLETELN 134 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455666666666655555444
No 58
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}
Probab=20.71 E-value=2.8e+02 Score=21.08 Aligned_cols=50 Identities=20% Similarity=0.276 Sum_probs=41.6
Q ss_pred CchHHHHHHHHHhHHHHHHHHHHHHHhhcchhhhHhHHHHHHHhhhhhhH
Q 021279 111 ITDDKEKLRRQLSASLAARKSLEVLCSSLGKEKEIMAGELARKVHELNEM 160 (315)
Q Consensus 111 ~~dekeklkkeL~ASlaArkSLe~mCSSLGKEKeIMA~ElaRKv~ELnem 160 (315)
|++|.+.|.++|..-......|.-=-..|-+|++-++.+|+..-.|+..+
T Consensus 2 ~~~~~~~l~~eL~~l~~eE~~L~~eL~~lEke~~~l~~el~~le~E~~~L 51 (96)
T 3q8t_A 2 PGSDSEQLQRELKELALEEERLIQELEDVEKNRKVVAENLEKVQAEAERL 51 (96)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 58899999999999888888888888889999999999998776665544
No 59
>3zcc_A HAMP, osmolarity sensor protein ENVZ; signaling protein, signal transduction, membrane protein, signalling, chimera; 1.25A {Archaeoglobus fulgidus} PDB: 3zrw_A 3zrv_A 3zrx_A 3zrw_B 2lfr_A 2lfs_A 1joy_A 2l7h_A 2l7i_A 2y20_A 2y21_A 2y0q_A 2y0t_A
Probab=20.62 E-value=1.9e+02 Score=19.00 Aligned_cols=50 Identities=10% Similarity=0.189 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccc-ccHHHHHHHHHhhhhhh
Q 021279 236 MRATMEELGKKVEAGIDQILGFRQRIATKEEQE-VDIEEEITALEGMFDSF 285 (315)
Q Consensus 236 i~~tme~~~~~V~aG~~~i~~fr~R~~~~~eq~-~dIeeEisaLe~mfe~~ 285 (315)
.+..+..+.-++...+..|..+-+.+....+.- -.|..++..|..+.+.+
T Consensus 60 ~~~~~~~~shel~tpl~~i~~~~e~l~~~~~~~~~~i~~~~~~l~~~i~~l 110 (114)
T 3zcc_A 60 GTLLMAGVSHDLRTPLTRIRLATEMMSEQDGYLAESINKDIEECNAIIEQF 110 (114)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHcChHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHH
Confidence 444567777777777777777776554433222 35777777777776654
Done!