Query 021279
Match_columns 315
No_of_seqs 6 out of 8
Neff 1.8
Searched_HMMs 13730
Date Mon Mar 25 15:22:17 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021279.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/021279hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2j9ga1 b.84.2.1 (A:331-446) B 50.7 1.4 9.9E-05 33.4 -0.3 22 24-45 77-98 (116)
2 d1ulza1 b.84.2.1 (A:329-451) B 41.3 3.3 0.00024 31.4 0.6 22 24-45 79-100 (123)
3 d1ykhb1 a.252.1.1 (B:2-130) RN 39.6 69 0.005 23.9 9.9 80 104-183 43-126 (129)
4 d2cosa1 a.5.2.1 (A:8-48) Serin 35.2 22 0.0016 23.3 3.9 30 246-281 9-41 (41)
5 d1seta1 a.2.7.1 (A:1-110) Sery 34.6 34 0.0025 23.9 5.3 27 210-236 28-54 (110)
6 d1v43a1 b.40.6.3 (A:246-299) H 34.4 2.8 0.0002 27.6 -0.8 13 19-31 42-54 (54)
7 d1w96a1 b.84.2.1 (A:451-566) A 32.1 3.4 0.00025 30.8 -0.7 23 24-46 78-101 (116)
8 d1uklc_ a.38.1.1 (C:) SREBP-2 30.4 32 0.0024 22.3 4.2 32 211-242 27-58 (61)
9 d1u5ta1 a.4.5.54 (A:20-164) Va 27.4 62 0.0045 25.2 6.1 105 161-287 7-130 (145)
10 d1lvfa_ a.47.2.1 (A:) Syntaxin 26.1 1E+02 0.0074 21.7 7.2 22 209-230 8-29 (106)
11 d1gqea_ e.38.1.1 (A:) Polypept 24.1 2E+02 0.014 24.3 10.5 30 201-231 50-79 (362)
12 d1ez3a_ a.47.2.1 (A:) Syntaxin 22.9 1.1E+02 0.0083 21.1 7.9 68 158-228 48-118 (124)
13 d2acva1 c.87.1.10 (A:3-463) Tr 22.3 45 0.0033 25.3 4.2 41 207-247 412-459 (461)
No 1
>d2j9ga1 b.84.2.1 (A:331-446) Biotin carboxylase (BC), C-domain {Escherichia coli [TaxId: 562]}
Probab=50.68 E-value=1.4 Score=33.38 Aligned_cols=22 Identities=32% Similarity=0.724 Sum_probs=19.7
Q ss_pred CccchhhhhhhHHHHHHHHhhh
Q 021279 24 EDLSFEGIAANVKLLLKLIQDH 45 (315)
Q Consensus 24 ed~slEGiatNvKLLLKLiQdH 45 (315)
.++.++||.||+-+|.+++++.
T Consensus 77 ~e~~I~Gv~TN~~~l~~il~~~ 98 (116)
T d2j9ga1 77 QELIIDGIKTNVDLQIRIMNDE 98 (116)
T ss_dssp HHCEEESSCCSHHHHHHHHTCH
T ss_pred HhccccCcCccHHHHHHHhCCh
Confidence 6788999999999999999764
No 2
>d1ulza1 b.84.2.1 (A:329-451) Biotin carboxylase (BC), C-domain {Aquifex aeolicus [TaxId: 63363]}
Probab=41.30 E-value=3.3 Score=31.42 Aligned_cols=22 Identities=18% Similarity=0.596 Sum_probs=19.6
Q ss_pred CccchhhhhhhHHHHHHHHhhh
Q 021279 24 EDLSFEGIAANVKLLLKLIQDH 45 (315)
Q Consensus 24 ed~slEGiatNvKLLLKLiQdH 45 (315)
.++-++||.||+.+|..++++.
T Consensus 79 ~e~~I~Gv~TNi~fl~~il~~~ 100 (123)
T d1ulza1 79 ETYEITGVKTTIPLLINIMKEK 100 (123)
T ss_dssp HTCEECSSCCSHHHHHHHHHCH
T ss_pred HHhccCCcCccHHHHHHHhCCh
Confidence 6788999999999999999854
No 3
>d1ykhb1 a.252.1.1 (B:2-130) RNA polymerase II holoenzyme component SRB7 (MED21) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=39.64 E-value=69 Score=23.88 Aligned_cols=80 Identities=16% Similarity=0.146 Sum_probs=47.7
Q ss_pred CcCCCCCCchHHHHHHHHHhHHHH-HHHHHHHHHhhcchhh---hHhHHHHHHHhhhhhhHHHHHHHHHHhhHHHHHHHH
Q 021279 104 DKKLCEPITDDKEKLRRQLSASLA-ARKSLEVLCSSLGKEK---EIMAGELARKVHELNEMEELINDFKAQNASLLAKVQ 179 (315)
Q Consensus 104 DkKp~e~~~dekeklkkeL~ASla-ArkSLe~mCSSLGKEK---eIMA~ElaRKv~ELnemEeli~DlkAQN~~Ll~K~q 179 (315)
+..++..++++-+..-++|++.++ +-|=+++.-+||--+- |-=+.-|++--.|+.++++=....-...+.||++|+
T Consensus 43 ~~~~~~~~~e~f~~~~~elA~dii~kakqId~LI~sLP~~~~see~Q~~~i~~Le~E~~~~~~el~~~v~e~e~ll~~i~ 122 (129)
T d1ykhb1 43 DKHATVVPPEEFSNTIDELSTDIILKTRQINKLIDSLPGVDVSAEEQLRKIDMLQKKLVEVEDEKIEAIKKKEKLMRHVD 122 (129)
T ss_dssp -----CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555667888888999999875 3456888999994321 222333444444555555444444456788888888
Q ss_pred HhHH
Q 021279 180 NCAA 183 (315)
Q Consensus 180 ~~a~ 183 (315)
+.-.
T Consensus 123 ~~i~ 126 (129)
T d1ykhb1 123 SMIE 126 (129)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7543
No 4
>d2cosa1 a.5.2.1 (A:8-48) Serine/threonine protein kinase LATS2 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=35.19 E-value=22 Score=23.28 Aligned_cols=30 Identities=33% Similarity=0.396 Sum_probs=20.1
Q ss_pred HHHHHHHH---HHHHHHhhhhhccccccHHHHHHHHHhh
Q 021279 246 KVEAGIDQ---ILGFRQRIATKEEQEVDIEEEITALEGM 281 (315)
Q Consensus 246 ~V~aG~~~---i~~fr~R~~~~~eq~~dIeeEisaLe~m 281 (315)
-|.||+|+ |+.+|| +.+- .||.-|.-+-+|
T Consensus 9 l~~aG~D~~m~iral~q---t~~r---sieaaie~iskm 41 (41)
T d2cosa1 9 LVNAGCDQEMAGRALKQ---TGSR---SIEAALEYISKM 41 (41)
T ss_dssp HHHHHCCHHHHHHHHHH---HTSC---CHHHHHHHHHHH
T ss_pred HHHcCCCHHHHHHHHHH---hCcc---cHHHHHHHHhcC
Confidence 37899998 899999 4432 477766544433
No 5
>d1seta1 a.2.7.1 (A:1-110) Seryl-tRNA synthetase (SerRS) {Thermus thermophilus, strain hb27 [TaxId: 274]}
Probab=34.56 E-value=34 Score=23.91 Aligned_cols=27 Identities=30% Similarity=0.326 Sum_probs=16.8
Q ss_pred HHHHhhhhhhHHHHHHhHHHHHHhHHH
Q 021279 210 EHLLKSLDGYRSLKKKYKYVKEENTAM 236 (315)
Q Consensus 210 eqLlKSiDgyRSlKrkyk~~qeEN~~i 236 (315)
+++++--.-||++..++..++.+--.+
T Consensus 28 d~i~~ld~~rr~l~~~~e~l~~~rN~~ 54 (110)
T d1seta1 28 EALLALDREVQELKKRLQEVQTERNQV 54 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555566777777777766664443
No 6
>d1v43a1 b.40.6.3 (A:246-299) Hypothetical protein PH0022, C-terminal domain {Pyrococcus horikoshii [TaxId: 53953]}
Probab=34.43 E-value=2.8 Score=27.57 Aligned_cols=13 Identities=38% Similarity=0.708 Sum_probs=10.9
Q ss_pred CCCCCCccchhhh
Q 021279 19 NADRPEDLSFEGI 31 (315)
Q Consensus 19 ~~drPed~slEGi 31 (315)
--+||||.++|||
T Consensus 42 lGIRPE~i~~egi 54 (54)
T d1v43a1 42 FGIRPEHMTVEGV 54 (54)
T ss_dssp EEECGGGEEESCC
T ss_pred EEEChhhcEeccC
Confidence 3469999999997
No 7
>d1w96a1 b.84.2.1 (A:451-566) Acetyl-CoA carboxylase, BC-C subdomain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=32.07 E-value=3.4 Score=30.84 Aligned_cols=23 Identities=30% Similarity=0.625 Sum_probs=16.8
Q ss_pred Cccchhh-hhhhHHHHHHHHhhhc
Q 021279 24 EDLSFEG-IAANVKLLLKLIQDHT 46 (315)
Q Consensus 24 ed~slEG-iatNvKLLLKLiQdHn 46 (315)
+++.++| |.||+.+|..++++-.
T Consensus 78 ~e~~I~G~v~TN~~fL~~iL~~~~ 101 (116)
T d1w96a1 78 KELSIRGDFRTTVEYLIKLLETED 101 (116)
T ss_dssp HHHTTCC----CCHHHHHHHTSHH
T ss_pred HhceEeccccccHHHHHHHhCChh
Confidence 5778899 9999999999998643
No 8
>d1uklc_ a.38.1.1 (C:) SREBP-2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=30.36 E-value=32 Score=22.33 Aligned_cols=32 Identities=19% Similarity=0.301 Sum_probs=27.9
Q ss_pred HHHhhhhhhHHHHHHhHHHHHHhHHHHHHHHH
Q 021279 211 HLLKSLDGYRSLKKKYKYVKEENTAMRATMEE 242 (315)
Q Consensus 211 qLlKSiDgyRSlKrkyk~~qeEN~~i~~tme~ 242 (315)
-|-+.||--+.|+...+..++||..++..+..
T Consensus 27 iL~~Ai~YI~~Lq~~~~~L~~e~~~L~~~~~~ 58 (61)
T d1uklc_ 27 VLRKAIDYIKYLQQVNHKLRQENMVLKLANQK 58 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46788899999999999999999999988753
No 9
>d1u5ta1 a.4.5.54 (A:20-164) Vacuolar sorting protein SNF8 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=27.37 E-value=62 Score=25.20 Aligned_cols=105 Identities=17% Similarity=0.289 Sum_probs=65.3
Q ss_pred HHHHHHHHHhhHHHHHHHHHhHHhhhhhcccccccccchhhHHhhHHHHHHH----HhhhhhhHHHHHHhHHHHHHhHHH
Q 021279 161 EELINDFKAQNASLLAKVQNCAAEHKEKKCSAGEIQGNAALQERNKALSEHL----LKSLDGYRSLKKKYKYVKEENTAM 236 (315)
Q Consensus 161 Eeli~DlkAQN~~Ll~K~q~~a~e~k~~~~s~~e~~gN~aLq~RNkaLSeqL----lKSiDgyRSlKrkyk~~qeEN~~i 236 (315)
|.=...++.|-+..-+.|+++|.+|+ -|+..|..++..=..+...+ |-|-.|+.++ .++
T Consensus 7 e~q~~ql~~QL~vF~~~L~~FA~kH~------~eI~~np~FR~~F~~MC~~iGVDPLas~~~~~~~-----------lg~ 69 (145)
T d1u5ta1 7 EKQSVELRDQLMVFQERLVEFAKKHN------SELQASPEFRSKFMHMCSSIGIDPLSLFDRDKHL-----------FTV 69 (145)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCT------TTTTTCHHHHHHHHHHHHHHTCCHHHHTTSSGGG-----------TTH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhH------HHhhcCHHHHHHHHHHHHHhCCChhhcCCCcccc-----------ccc
Confidence 34455678888889999999999999 68899999887776666544 3344444433 234
Q ss_pred HHHHHHHHHHH----------HHH---HHHHHHHHH--hhhhhccccccHHHHHHHHHhhhhhhcc
Q 021279 237 RATMEELGKKV----------EAG---IDQILGFRQ--RIATKEEQEVDIEEEITALEGMFDSFNM 287 (315)
Q Consensus 237 ~~tme~~~~~V----------~aG---~~~i~~fr~--R~~~~~eq~~dIeeEisaLe~mfe~~~m 287 (315)
-+--=++++.| +-| ++.+.+... +-.+.+ ||+.-|+.|.-+ .+|++
T Consensus 70 gDFYyEL~VqIvEvC~~tr~~NGGli~l~el~~~~~~~~~is~d----Di~rAi~~L~~L-gG~~v 130 (145)
T d1u5ta1 70 NDFYYEVCLKVIEICRQTKDMNGGVISFQELEKVHFRKLNVGLD----DLEKSIDMLKSL-ECFEI 130 (145)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTSSSCEEHHHHHHTTTTTTTCCHH----HHHHHHHHHTTT-CCCCE
T ss_pred cchHHHHHHHHHHHHHHhhhcCCCEeEHHHHHHHHHhhcCCCHH----HHHHHHHhhccc-CCcEE
Confidence 44444444433 123 333332221 122333 899999999877 55554
No 10
>d1lvfa_ a.47.2.1 (A:) Syntaxin 6, SNAP-25 homolog {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=26.12 E-value=1e+02 Score=21.69 Aligned_cols=22 Identities=9% Similarity=0.197 Sum_probs=16.4
Q ss_pred HHHHHhhhhhhHHHHHHhHHHH
Q 021279 209 SEHLLKSLDGYRSLKKKYKYVK 230 (315)
Q Consensus 209 SeqLlKSiDgyRSlKrkyk~~q 230 (315)
-+-+++|+|.-++|=++|..+.
T Consensus 8 ~~EVq~s~~~~~~l~~~w~~~~ 29 (106)
T d1lvfa_ 8 KGEVQKAVNTAQGLFQRWTELL 29 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 3567888888888888876554
No 11
>d1gqea_ e.38.1.1 (A:) Polypeptide chain release factor 2 (RF2) {Escherichia coli [TaxId: 562]}
Probab=24.06 E-value=2e+02 Score=24.31 Aligned_cols=30 Identities=23% Similarity=0.172 Sum_probs=19.3
Q ss_pred hHHhhHHHHHHHHhhhhhhHHHHHHhHHHHH
Q 021279 201 LQERNKALSEHLLKSLDGYRSLKKKYKYVKE 231 (315)
Q Consensus 201 Lq~RNkaLSeqLlKSiDgyRSlKrkyk~~qe 231 (315)
.|.=.|.++ .|-+-++.|..|+..+.++++
T Consensus 50 Aqkl~KE~s-~L~~iVe~~~~l~~~leDl~e 79 (362)
T d1gqea_ 50 AQALGKERS-SLEAVVDTLDQMKQGLEDVSG 79 (362)
T ss_dssp HHHHHHHHH-HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHH-HHHHHHHHHHHHHHHHHHHHH
Confidence 333344443 355667888888888888765
No 12
>d1ez3a_ a.47.2.1 (A:) Syntaxin 1A N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=22.89 E-value=1.1e+02 Score=21.11 Aligned_cols=68 Identities=24% Similarity=0.415 Sum_probs=39.2
Q ss_pred hhHHHHHHHHHHhhHHHHHHHHHhHHhhhhhcccccccccchhhHHhh---HHHHHHHHhhhhhhHHHHHHhHH
Q 021279 158 NEMEELINDFKAQNASLLAKVQNCAAEHKEKKCSAGEIQGNAALQERN---KALSEHLLKSLDGYRSLKKKYKY 228 (315)
Q Consensus 158 nemEeli~DlkAQN~~Ll~K~q~~a~e~k~~~~s~~e~~gN~aLq~RN---kaLSeqLlKSiDgyRSlKrkyk~ 228 (315)
.+|+.++.+.+.....+-.+|++.... +++.. +...|-+..+-|. -+|+-+|...+.-|..+--.|++
T Consensus 48 ~~l~~~~~~i~~~a~~ik~~Lk~l~~~-~~~~~--~~~~~s~~~Rir~~q~~~L~~kf~e~m~~yq~~q~~yr~ 118 (124)
T d1ez3a_ 48 EELEELMSDIKKTANKVRSKLKSIEQS-IEQEE--GLNRSSADLRIRKTQHSTLSRKFVEVMSEYNATQSDYRE 118 (124)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHH--TTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhhh--ccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 357778888888888777777765432 21111 1122223333232 36777777777777776666654
No 13
>d2acva1 c.87.1.10 (A:3-463) Triterpene UDP-glucosyl transferase UGT71G1 {Medicago truncatula [TaxId: 3880]}
Probab=22.27 E-value=45 Score=25.25 Aligned_cols=41 Identities=10% Similarity=0.149 Sum_probs=24.4
Q ss_pred HHHHHHHhhh--hh-hHH----HHHHhHHHHHHhHHHHHHHHHHHHHH
Q 021279 207 ALSEHLLKSL--DG-YRS----LKKKYKYVKEENTAMRATMEELGKKV 247 (315)
Q Consensus 207 aLSeqLlKSi--Dg-yRS----lKrkyk~~qeEN~~i~~tme~~~~~V 247 (315)
+|.+.|.+-| |. ||. |+.+.+++.+|++.-++.++++=++|
T Consensus 412 ~l~~a~~~vl~~d~~~r~~a~~l~~~~r~a~~~gg~s~~~~~~~~~~~ 459 (461)
T d2acva1 412 EIEKGLKDLMDKDSIVHKKVQEMKEMSRNAVVDGGSSLISVGKLIDDI 459 (461)
T ss_dssp HHHHHHHHHTCTTCTHHHHHHHHHHHHHHHTSTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhCCHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHh
Confidence 4555665556 45 875 66667777777755555554444443
Done!