BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 021281
(314 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1AVA|A Chain A, Amy2BASI PROTEIN-Protein Complex From Barley Seed
pdb|1AVA|B Chain B, Amy2BASI PROTEIN-Protein Complex From Barley Seed
pdb|1AMY|A Chain A, Crystal And Molecular Structure Of Barley Alpha-Amylase
pdb|1BG9|A Chain A, Barley Alpha-Amylase With Substrate Analogue Acarbose
Length = 403
Score = 268 bits (685), Expect = 3e-72, Method: Compositional matrix adjust.
Identities = 141/294 (47%), Positives = 187/294 (63%), Gaps = 14/294 (4%)
Query: 26 EILFQGFNWESCKHD--WWRNLERKVPDISKSGFTSVWLPPATHSFAPEGYLPQNLYSLN 83
++LFQGFNWES KH+ W+ L KV DI+ +G T VWLPPA+ S A +GY+P LY L+
Sbjct: 1 QVLFQGFNWESWKHNGGWYNFLMGKVDDIAAAGITHVWLPPASQSVAEQGYMPGRLYDLD 60
Query: 84 SS-YGSEHLLKALLHKMKQHKVRAMADIVINHRVGTTQGHGGKYNRYDG----IPLSWDE 138
+S YG++ LK+L+ + V+A+ADIVINHR + G Y ++G L W
Sbjct: 61 ASKYGNKAQLKSLIGALHGKGVKAIADIVINHRTAEHKDGRGIYCIFEGGTPDARLDWGP 120
Query: 139 HAVT----SCTGGLGNGSTGDNFHGVPNIDHTQHFVRKDIIAWLRWLRNTVGFQDFRFDF 194
H + G GN TG +F P+IDH V+K+++ WL WL+ +GF +RFDF
Sbjct: 121 HMICRDDRPYADGTGNPDTGADFGAAPDIDHLNLRVQKELVEWLNWLKADIGFDGWRFDF 180
Query: 195 ARGYSAKYVKEYIEGARPIFSVGEYWDSCNYNSHGL-DYNQDSHRQRIINWIDGTGQLSA 253
A+GYSA K YI+ + P F+V E W S Y G + NQD HRQ ++NW+D G
Sbjct: 181 AKGYSADVAKIYIDRSEPSFAVAEIWTSLAYGGDGKPNLNQDQHRQELVNWVDKVGGKGP 240
Query: 254 A--FDFTTKGILQEAVKGQFWRLRDAQGKPPGVMGWWPSRAVTFLDNHDTGSTQ 305
A FDFTTKGIL AV+G+ WRLR GK PG++GWWP++AVTF+DNHDTGSTQ
Sbjct: 241 ATTFDFTTKGILNVAVEGELWRLRGTDGKAPGMIGWWPAKAVTFVDNHDTGSTQ 294
>pdb|3BSG|A Chain A, Barley Alpha-Amylase Isozyme 1 (Amy1) H395a Mutant
Length = 414
Score = 266 bits (681), Expect = 8e-72, Method: Compositional matrix adjust.
Identities = 138/296 (46%), Positives = 188/296 (63%), Gaps = 15/296 (5%)
Query: 26 EILFQGFNWESCKHD--WWRNLERKVPDISKSGFTSVWLPPATHSFAPEGYLPQNLYSLN 83
++LFQGFNWES K W+ + KV DI+ +G T VWLPP +HS + EGY+P LY ++
Sbjct: 2 QVLFQGFNWESWKQSGGWYNMMMGKVDDIAAAGVTHVWLPPPSHSVSNEGYMPGRLYDID 61
Query: 84 SS-YGSEHLLKALLHKMKQHKVRAMADIVINHRVGTTQGHGGKYNRYDGIP----LSWDE 138
+S YG+ LK+L+ + V+A+ADIVINHR + G Y ++G L W
Sbjct: 62 ASKYGNAAELKSLIGALHGKGVQAIADIVINHRCADYKDSRGIYCIFEGGTSDGRLDWGP 121
Query: 139 HAV----TSCTGGLGNGSTGDNFHGVPNIDHTQHFVRKDIIAWLRWLRNTVGFQDFRFDF 194
H + T + G N TG +F P+IDH V++++ WL WL++ +GF +R DF
Sbjct: 122 HMICRDDTKYSDGTANLDTGADFAAAPDIDHLNDRVQRELKEWLLWLKSDLGFDAWRLDF 181
Query: 195 ARGYSAKYVKEYIEGARPIFSVGEYWDSCNYNSHGL-DYNQDSHRQRIINWIDGTGQLSA 253
ARGYS + K YI+G P +V E WD+ G +Y+QD+HRQ ++NW+D G ++
Sbjct: 182 ARGYSPEMAKVYIDGTSPSLAVAEVWDNMATGGDGKPNYDQDAHRQNLVNWVDKVGGAAS 241
Query: 254 A---FDFTTKGILQEAVKGQFWRLRDAQGKPPGVMGWWPSRAVTFLDNHDTGSTQV 306
A FDFTTKGIL AV+G+ WRL D QGK PGVMGWWP++AVTF+DNHDTGSTQ
Sbjct: 242 AGMVFDFTTKGILNAAVEGELWRLIDPQGKAPGVMGWWPAKAVTFVDNHDTGSTQA 297
>pdb|1HT6|A Chain A, Crystal Structure At 1.5a Resolution Of The Barley Alpha-
Amylase Isozyme 1
pdb|1P6W|A Chain A, Crystal Structure Of Barley Alpha-Amylase Isozyme 1 (Amy1)
In Complex With The Substrate Analogue, Methyl
4i,4ii,4iii- Tri-Thiomaltotetraoside (Thio-Dp4)
pdb|1RPK|A Chain A, Crystal Structure Of Barley Alpha-Amylase Isozyme 1 (Amy1)
In Complex With Acarbose
Length = 405
Score = 266 bits (680), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 138/296 (46%), Positives = 188/296 (63%), Gaps = 15/296 (5%)
Query: 26 EILFQGFNWESCKHD--WWRNLERKVPDISKSGFTSVWLPPATHSFAPEGYLPQNLYSLN 83
++LFQGFNWES K W+ + KV DI+ +G T VWLPP +HS + EGY+P LY ++
Sbjct: 2 QVLFQGFNWESWKQSGGWYNMMMGKVDDIAAAGVTHVWLPPPSHSVSNEGYMPGRLYDID 61
Query: 84 SS-YGSEHLLKALLHKMKQHKVRAMADIVINHRVGTTQGHGGKYNRYDGIP----LSWDE 138
+S YG+ LK+L+ + V+A+ADIVINHR + G Y ++G L W
Sbjct: 62 ASKYGNAAELKSLIGALHGKGVQAIADIVINHRCADYKDSRGIYCIFEGGTSDGRLDWGP 121
Query: 139 HAV----TSCTGGLGNGSTGDNFHGVPNIDHTQHFVRKDIIAWLRWLRNTVGFQDFRFDF 194
H + T + G N TG +F P+IDH V++++ WL WL++ +GF +R DF
Sbjct: 122 HMICRDDTKYSDGTANLDTGADFAAAPDIDHLNDRVQRELKEWLLWLKSDLGFDAWRLDF 181
Query: 195 ARGYSAKYVKEYIEGARPIFSVGEYWDSCNYNSHGL-DYNQDSHRQRIINWIDGTGQLSA 253
ARGYS + K YI+G P +V E WD+ G +Y+QD+HRQ ++NW+D G ++
Sbjct: 182 ARGYSPEMAKVYIDGTSPSLAVAEVWDNMATGGDGKPNYDQDAHRQNLVNWVDKVGGAAS 241
Query: 254 A---FDFTTKGILQEAVKGQFWRLRDAQGKPPGVMGWWPSRAVTFLDNHDTGSTQV 306
A FDFTTKGIL AV+G+ WRL D QGK PGVMGWWP++AVTF+DNHDTGSTQ
Sbjct: 242 AGMVFDFTTKGILNAAVEGELWRLIDPQGKAPGVMGWWPAKAVTFVDNHDTGSTQA 297
>pdb|2QPS|A Chain A, "sugar Tongs" Mutant Y380a In Complex With Acarbose
Length = 405
Score = 266 bits (680), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 138/296 (46%), Positives = 188/296 (63%), Gaps = 15/296 (5%)
Query: 26 EILFQGFNWESCKHD--WWRNLERKVPDISKSGFTSVWLPPATHSFAPEGYLPQNLYSLN 83
++LFQGFNWES K W+ + KV DI+ +G T VWLPP +HS + EGY+P LY ++
Sbjct: 2 QVLFQGFNWESWKQSGGWYNMMMGKVDDIAAAGVTHVWLPPPSHSVSNEGYMPGRLYDID 61
Query: 84 SS-YGSEHLLKALLHKMKQHKVRAMADIVINHRVGTTQGHGGKYNRYDGIP----LSWDE 138
+S YG+ LK+L+ + V+A+ADIVINHR + G Y ++G L W
Sbjct: 62 ASKYGNAAELKSLIGALHGKGVQAIADIVINHRCADYKDSRGIYCIFEGGTSDGRLDWGP 121
Query: 139 HAV----TSCTGGLGNGSTGDNFHGVPNIDHTQHFVRKDIIAWLRWLRNTVGFQDFRFDF 194
H + T + G N TG +F P+IDH V++++ WL WL++ +GF +R DF
Sbjct: 122 HMICRDDTKYSDGTANLDTGADFAAAPDIDHLNDRVQRELKEWLLWLKSDLGFDAWRLDF 181
Query: 195 ARGYSAKYVKEYIEGARPIFSVGEYWDSCNYNSHGL-DYNQDSHRQRIINWIDGTGQLSA 253
ARGYS + K YI+G P +V E WD+ G +Y+QD+HRQ ++NW+D G ++
Sbjct: 182 ARGYSPEMAKVYIDGTSPSLAVAEVWDNMATGGDGKPNYDQDAHRQNLVNWVDKVGGAAS 241
Query: 254 A---FDFTTKGILQEAVKGQFWRLRDAQGKPPGVMGWWPSRAVTFLDNHDTGSTQV 306
A FDFTTKGIL AV+G+ WRL D QGK PGVMGWWP++AVTF+DNHDTGSTQ
Sbjct: 242 AGMVFDFTTKGILNAAVEGELWRLIDPQGKAPGVMGWWPAKAVTFVDNHDTGSTQA 297
>pdb|2QPU|A Chain A, Sugar Tongs Mutant S378p In Complex With Acarbose
pdb|2QPU|B Chain B, Sugar Tongs Mutant S378p In Complex With Acarbose
pdb|2QPU|C Chain C, Sugar Tongs Mutant S378p In Complex With Acarbose
Length = 405
Score = 266 bits (680), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 138/296 (46%), Positives = 188/296 (63%), Gaps = 15/296 (5%)
Query: 26 EILFQGFNWESCKHD--WWRNLERKVPDISKSGFTSVWLPPATHSFAPEGYLPQNLYSLN 83
++LFQGFNWES K W+ + KV DI+ +G T VWLPP +HS + EGY+P LY ++
Sbjct: 2 QVLFQGFNWESWKQSGGWYNMMMGKVDDIAAAGVTHVWLPPPSHSVSNEGYMPGRLYDID 61
Query: 84 SS-YGSEHLLKALLHKMKQHKVRAMADIVINHRVGTTQGHGGKYNRYDGIP----LSWDE 138
+S YG+ LK+L+ + V+A+ADIVINHR + G Y ++G L W
Sbjct: 62 ASKYGNAAELKSLIGALHGKGVQAIADIVINHRCADYKDSRGIYCIFEGGTSDGRLDWGP 121
Query: 139 HAV----TSCTGGLGNGSTGDNFHGVPNIDHTQHFVRKDIIAWLRWLRNTVGFQDFRFDF 194
H + T + G N TG +F P+IDH V++++ WL WL++ +GF +R DF
Sbjct: 122 HMICRDDTKYSDGTANLDTGADFAAAPDIDHLNDRVQRELKEWLLWLKSDLGFDAWRLDF 181
Query: 195 ARGYSAKYVKEYIEGARPIFSVGEYWDSCNYNSHGL-DYNQDSHRQRIINWIDGTGQLSA 253
ARGYS + K YI+G P +V E WD+ G +Y+QD+HRQ ++NW+D G ++
Sbjct: 182 ARGYSPEMAKVYIDGTSPSLAVAEVWDNMATGGDGKPNYDQDAHRQNLVNWVDKVGGAAS 241
Query: 254 A---FDFTTKGILQEAVKGQFWRLRDAQGKPPGVMGWWPSRAVTFLDNHDTGSTQV 306
A FDFTTKGIL AV+G+ WRL D QGK PGVMGWWP++AVTF+DNHDTGSTQ
Sbjct: 242 AGMVFDFTTKGILNAAVEGELWRLIDPQGKAPGVMGWWPAKAVTFVDNHDTGSTQA 297
>pdb|3BSH|A Chain A, Barley Alpha-Amylase Isozyme 1 (Amy1) Double Mutant
Y105aY380A IN COMPLEX WITH INHIBITOR ACARBOSE
Length = 414
Score = 264 bits (674), Expect = 5e-71, Method: Compositional matrix adjust.
Identities = 137/296 (46%), Positives = 187/296 (63%), Gaps = 15/296 (5%)
Query: 26 EILFQGFNWESCKHD--WWRNLERKVPDISKSGFTSVWLPPATHSFAPEGYLPQNLYSLN 83
++LFQGFNWES K W+ + KV DI+ +G T VWLPP +HS + EGY+P LY ++
Sbjct: 2 QVLFQGFNWESWKQSGGWYNMMMGKVDDIAAAGVTHVWLPPPSHSVSNEGYMPGRLYDID 61
Query: 84 SS-YGSEHLLKALLHKMKQHKVRAMADIVINHRVGTTQGHGGKYNRYDGIP----LSWDE 138
+S YG+ LK+L+ + V+A+ADIVINHR + G ++G L W
Sbjct: 62 ASKYGNAAELKSLIGALHGKGVQAIADIVINHRCADYKDSRGIACIFEGGTSDGRLDWGP 121
Query: 139 HAV----TSCTGGLGNGSTGDNFHGVPNIDHTQHFVRKDIIAWLRWLRNTVGFQDFRFDF 194
H + T + G N TG +F P+IDH V++++ WL WL++ +GF +R DF
Sbjct: 122 HMICRDDTKYSDGTANLDTGADFAAAPDIDHLNDRVQRELKEWLLWLKSDLGFDAWRLDF 181
Query: 195 ARGYSAKYVKEYIEGARPIFSVGEYWDSCNYNSHGL-DYNQDSHRQRIINWIDGTGQLSA 253
ARGYS + K YI+G P +V E WD+ G +Y+QD+HRQ ++NW+D G ++
Sbjct: 182 ARGYSPEMAKVYIDGTSPSLAVAEVWDNMATGGDGKPNYDQDAHRQNLVNWVDKVGGAAS 241
Query: 254 A---FDFTTKGILQEAVKGQFWRLRDAQGKPPGVMGWWPSRAVTFLDNHDTGSTQV 306
A FDFTTKGIL AV+G+ WRL D QGK PGVMGWWP++AVTF+DNHDTGSTQ
Sbjct: 242 AGMVFDFTTKGILNAAVEGELWRLIDPQGKAPGVMGWWPAKAVTFVDNHDTGSTQA 297
>pdb|1RP8|A Chain A, Crystal Structure Of Barley Alpha-Amylase Isozyme 1 (Amy1)
Inactive Mutant D180a In Complex With Maltoheptaose
pdb|1RP9|A Chain A, Crystal Structure Of Barley Alpha-amylase Isozyme 1 (amy1)
Inactive Mutant D180a In Complex With Acarbose
Length = 405
Score = 263 bits (673), Expect = 7e-71, Method: Compositional matrix adjust.
Identities = 137/296 (46%), Positives = 187/296 (63%), Gaps = 15/296 (5%)
Query: 26 EILFQGFNWESCKHD--WWRNLERKVPDISKSGFTSVWLPPATHSFAPEGYLPQNLYSLN 83
++LFQGFNWES K W+ + KV DI+ +G T VWLPP +HS + EGY+P LY ++
Sbjct: 2 QVLFQGFNWESWKQSGGWYNMMMGKVDDIAAAGVTHVWLPPPSHSVSNEGYMPGRLYDID 61
Query: 84 SS-YGSEHLLKALLHKMKQHKVRAMADIVINHRVGTTQGHGGKYNRYDGIP----LSWDE 138
+S YG+ LK+L+ + V+A+ADIVINHR + G Y ++G L W
Sbjct: 62 ASKYGNAAELKSLIGALHGKGVQAIADIVINHRCADYKDSRGIYCIFEGGTSDGRLDWGP 121
Query: 139 HAV----TSCTGGLGNGSTGDNFHGVPNIDHTQHFVRKDIIAWLRWLRNTVGFQDFRFDF 194
H + T + G N TG +F P+IDH V++++ WL WL++ +GF +R F
Sbjct: 122 HMICRDDTKYSDGTANLDTGADFAAAPDIDHLNDRVQRELKEWLLWLKSDLGFDAWRLAF 181
Query: 195 ARGYSAKYVKEYIEGARPIFSVGEYWDSCNYNSHGL-DYNQDSHRQRIINWIDGTGQLSA 253
ARGYS + K YI+G P +V E WD+ G +Y+QD+HRQ ++NW+D G ++
Sbjct: 182 ARGYSPEMAKVYIDGTSPSLAVAEVWDNMATGGDGKPNYDQDAHRQNLVNWVDKVGGAAS 241
Query: 254 A---FDFTTKGILQEAVKGQFWRLRDAQGKPPGVMGWWPSRAVTFLDNHDTGSTQV 306
A FDFTTKGIL AV+G+ WRL D QGK PGVMGWWP++AVTF+DNHDTGSTQ
Sbjct: 242 AGMVFDFTTKGILNAAVEGELWRLIDPQGKAPGVMGWWPAKAVTFVDNHDTGSTQA 297
>pdb|3QGV|A Chain A, Crystal Structure Of A Thermostable Amylase Variant
Length = 435
Score = 84.0 bits (206), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 78/299 (26%), Positives = 136/299 (45%), Gaps = 43/299 (14%)
Query: 27 ILFQGFNWESCKHD-WWRNLERKVPDISKSGFTSVWLPPATHSFA---PEGYLPQNLYSL 82
++ Q F W+ WW + +K+P+ +G +++W+PPA+ GY P + + L
Sbjct: 11 VIMQAFYWDVPSGGIWWDTIRQKIPEWYDAGISAIWIPPASKGMGGAYSMGYDPYDFFDL 70
Query: 83 ---------NSSYGSEHLLKALLHKMKQHKVRAMADIVINHRVGTTQGHGGKYNRYDGIP 133
+ +GS+ L +++ + ++ +ADIVINHR G N Y
Sbjct: 71 GEYDQKGTVETRFGSKQELVNMINTAHAYGMKVIADIVINHRAGGDLEWNPFVNDYTWTD 130
Query: 134 LS------WDEHAVTSCTGGLGNGSTGDNFHGVPNIDH----TQHFVRKDIIAWLRWLRN 183
S + + + L G +G F G P+I H Q+++ ++ +LR
Sbjct: 131 FSKVASGKYTANYLDFHPNELHAGDSG-TFGGYPDICHDKSWDQYWLWASQESYAAYLR- 188
Query: 184 TVGFQDFRFDFARGYSAKYVKEYIEGARPIFSVGEYWDSCNYNSHGLDYNQDSHRQRIIN 243
++G +RFD+ +GY+ VK+++ ++VGEYWD+ N D+ ++N
Sbjct: 189 SIGIDAWRFDYVKGYAPWVVKDWLNWWGG-WAVGEYWDT----------NVDA----VLN 233
Query: 244 WIDGTGQLSAAFDFTTKGILQEAVKGQ-FWRLRDAQGKPPGVMGWWPSRAVTFLDNHDT 301
W +G + FDF + EA + L A V+ P +AVTF+ NHDT
Sbjct: 234 WAYSSG--AKVFDFALYYKMDEAFDNKNIPALVSALQNGQTVVSRDPFKAVTFVANHDT 290
>pdb|1MWO|A Chain A, Crystal Structure Analysis Of The Hyperthermostable
Pyrocoocus Woesei Alpha-Amylase
pdb|1MXD|A Chain A, Structure Of A (Ca,Zn)-Dependent Alpha-Amylase From The
Hyperthermophilic Archaeon Pyrococcus Woesei
pdb|1MXG|A Chain A, Crystal Strucutre Of A (Ca,Zn)-Dependent Alpha-Amylase
From The Hyperthermophilic Archaeon Pyrococcus Woesei In
Complex With Acarbose
Length = 435
Score = 83.6 bits (205), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 80/310 (25%), Positives = 140/310 (45%), Gaps = 65/310 (20%)
Query: 27 ILFQGFNWESCKHD-WWRNLERKVPDISKSGFTSVWLPPATHSFA---PEGYLPQNLYSL 82
++ Q F W+ WW ++ K+P+ ++G +++WLPP + + GY P + + L
Sbjct: 11 VIMQAFYWDVPGGGIWWDHIRSKIPEWYEAGISAIWLPPPSKGMSGGYSMGYDPYDYFDL 70
Query: 83 NSSY---------GSEHLLKALLHKMKQHKVRAMADIVINHRVGTT---QGHGGKYN--- 127
Y GS+ L L+ + ++ +AD+VINHR G G Y
Sbjct: 71 GEYYQKGTVETRFGSKEELVRLIQTAHAYGIKVIADVVINHRAGGDLEWNPFVGDYTWTD 130
Query: 128 -------RYDGIPLSWDEHAVTSCTGGLGNGSTGDNFHGVPNIDH----TQHFVRKDIIA 176
+Y L + + + C G F G P+I H Q+++ K +
Sbjct: 131 FSKVASGKYTANYLDFHPNELHCCDEG--------TFGGFPDICHHKEWDQYWLWKSNES 182
Query: 177 WLRWLRNTVGFQDFRFDFARGYSAKYVKEYIEGARPIFSVGEYWDSCNYNSHGLDYNQDS 236
+ +LR ++GF +RFD+ +GY A V++++ ++VGEYWD+ N D+
Sbjct: 183 YAAYLR-SIGFDGWRFDYVKGYGAWVVRDWLNWWGG-WAVGEYWDT----------NVDA 230
Query: 237 HRQRIINWIDGTGQLSAAFDFTTKGILQEA-----VKGQFWRLRDAQGKPPGVMGWWPSR 291
+++W +G + FDF + EA + + L++ Q V+ P +
Sbjct: 231 ----LLSWAYESG--AKVFDFPLYYKMDEAFDNNNIPALVYALQNGQ----TVVSRDPFK 280
Query: 292 AVTFLDNHDT 301
AVTF+ NHDT
Sbjct: 281 AVTFVANHDT 290
>pdb|3BC9|A Chain A, Alpha-Amylase B In Complex With Acarbose
pdb|3BCD|A Chain A, Alpha-Amylase B In Complex With Maltotetraose And
Alpha-Cyclodextrin
pdb|3BCF|A Chain A, Alpha-Amylase B From Halothermothrix Orenii
Length = 599
Score = 79.3 bits (194), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 81/345 (23%), Positives = 137/345 (39%), Gaps = 92/345 (26%)
Query: 28 LFQGFNWE------SCKH----DWWRNLERKVPDISKSGFTSVWLPPATHSFA---PEGY 74
+ Q F WE + +H + W L + P+++++GFT+VWLPPA A GY
Sbjct: 125 ILQAFYWEMNTGEYATEHPEEANLWNLLAERAPELAEAGFTAVWLPPANKGMAGIHDVGY 184
Query: 75 LPQNLYSL---------NSSYGSEHLLKALLHKMKQHKVRAMADIVINHRVGTT------ 119
+L+ L + YG++ L+ + + + ++ D V+NHR+G
Sbjct: 185 GTYDLWDLGEFDQKGTVRTKYGTKGELENAIDALHNNDIKVYFDAVLNHRMGADYAETVL 244
Query: 120 ---------------------QGHGGKYNRY-------DGIPLSWDEHAVTSCTGGLGNG 151
G G+Y+ + DG WD+++ S
Sbjct: 245 LDENSRDKPGQYIKAWTGFNFPGRNGEYSNFTWNGQCFDGT--DWDDYSKESGKYLFDEK 302
Query: 152 S-------TGDNFHGVPNIDHTQHFVRKDIIAWLRWLRNTVGFQDFRFDFARGYSAKYVK 204
S D G ++D+ V+ D+I W +W+ N + F FR D + +++
Sbjct: 303 SWDWTYNWDEDYLMGA-DVDYENEAVQNDVIDWGQWIINNIDFDGFRLDAVKHIDYRFID 361
Query: 205 EYIEGA-----RPIFSVGEYWDSCNYNSHGLDYNQDSHRQRIINWIDGTGQLSA-AFDFT 258
+++ R +F VGE W + G +D G FDF
Sbjct: 362 KWMSAVQNSSNRDVFFVGEAWVEDVDDLKGF--------------LDTVGNPDLRVFDFP 407
Query: 259 TKGILQEAVKGQFWR-LRDA-QGKPPGVMGWWPSRAVTFLDNHDT 301
+ + + G + LR+A PG + +RAVTF+DNHDT
Sbjct: 408 LRSFFVDMLNGAYMADLRNAGLVNSPG----YENRAVTFVDNHDT 448
>pdb|2AMG|A Chain A, Structure Of Hydrolase (Glycosidase)
Length = 418
Score = 78.2 bits (191), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 83/299 (27%), Positives = 123/299 (41%), Gaps = 37/299 (12%)
Query: 24 GREILFQGFNWESCK---HDWWRNLERKVPDISKSGFTSVWLPPATHSFAP--------- 71
G EI+ QGF+W + +DW+ L ++ I+ GF+++W+P F+
Sbjct: 15 GDEIILQGFHWNVVREAPNDWYNILRQQAATIAADGFSAIWMPVPWRDFSSWSDGSKSGG 74
Query: 72 -EGYLPQNLYSLNSSYGSEHLLKALLHKMKQHKVRAMADIVINHRVGTTQGHGGKYNRYD 130
EGY + ++ N YGS+ L+ + V+ + D+V NH +G+ K
Sbjct: 75 GEGYFWHD-FNKNGRYGSDAQLRQAASALGGAGVKVLYDVVPNH---MNRGYPDKEINLP 130
Query: 131 GIPLSWDEHAVTSCTGGLGNGS-TGDNFHGVP---NIDHTQHF--VRKDIIAWLRWLRNT 184
W G N GD F G N H Q + R + LR+
Sbjct: 131 AGQGFWRNDCAD--PGNYPNDCDDGDRFIGGDADLNTGHPQVYGMFRDEFTN----LRSQ 184
Query: 185 VGFQDFRFDFARGYSAKYVKEYI-EGARPIFSVGEYWDSCNYNSHGLDYNQDSHRQRIIN 243
G FRFDF RGY+ + V ++ + A F VGE W + + N S +Q I +
Sbjct: 185 YGAGGFRFDFVRGYAPERVNSWMTDSADNSFCVGELWKGPSEYPNWDWRNTASWQQIIKD 244
Query: 244 WIDGTGQLSAAFDFTTKGILQEAVKGQFWRLRDAQGKPPGVMGWWPSRAVTFLDNHDTG 302
W D FDF K +Q + + P W AVTF+DNHDTG
Sbjct: 245 WSDRA--KCPVFDFALKERMQNGSIADWKHGLNGNPDPR-----WREVAVTFVDNHDTG 296
>pdb|1GCY|A Chain A, High Resolution Crystal Structure Of Maltotetraose-Forming
Exo-Amylase
Length = 527
Score = 78.2 bits (191), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 83/299 (27%), Positives = 123/299 (41%), Gaps = 37/299 (12%)
Query: 24 GREILFQGFNWESCK---HDWWRNLERKVPDISKSGFTSVWLPPATHSFAP--------- 71
G EI+ QGF+W + +DW+ L ++ I+ GF+++W+P F+
Sbjct: 15 GDEIILQGFHWNVVREAPNDWYNILRQQAATIAADGFSAIWMPVPWRDFSSWSDGSKSGG 74
Query: 72 -EGYLPQNLYSLNSSYGSEHLLKALLHKMKQHKVRAMADIVINHRVGTTQGHGGKYNRYD 130
EGY + ++ N YGS+ L+ + V+ + D+V NH +G+ K
Sbjct: 75 GEGYFWHD-FNKNGRYGSDAQLRQAASALGGAGVKVLYDVVPNH---MNRGYPDKEINLP 130
Query: 131 GIPLSWDEHAVTSCTGGLGNGS-TGDNFHGVP---NIDHTQHF--VRKDIIAWLRWLRNT 184
W G N GD F G N H Q + R + LR+
Sbjct: 131 AGQGFWRNDCAD--PGNYPNDCDDGDRFIGGDADLNTGHPQVYGMFRDEFTN----LRSQ 184
Query: 185 VGFQDFRFDFARGYSAKYVKEYI-EGARPIFSVGEYWDSCNYNSHGLDYNQDSHRQRIIN 243
G FRFDF RGY+ + V ++ + A F VGE W + + N S +Q I +
Sbjct: 185 YGAGGFRFDFVRGYAPERVNSWMTDSADNSFCVGELWKGPSEYPNWDWRNTASWQQIIKD 244
Query: 244 WIDGTGQLSAAFDFTTKGILQEAVKGQFWRLRDAQGKPPGVMGWWPSRAVTFLDNHDTG 302
W D FDF K +Q + + P W AVTF+DNHDTG
Sbjct: 245 WSDRA--KCPVFDFALKERMQNGSIADWKHGLNGNPDPR-----WREVAVTFVDNHDTG 296
>pdb|1JDA|A Chain A, Maltotetraose-Forming Exo-Amylase
pdb|1JDC|A Chain A, Mutant (E219q) Maltotetraose-Forming Exo-Amylase
Cocrystallized With Maltotetraose (Crystal Type 1)
pdb|1JDD|A Chain A, Mutant (E219q) Maltotetraose-Forming Exo-Amylase
Cocrystallized With Maltotetraose (Crystal Type 2)
Length = 429
Score = 77.0 bits (188), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 82/299 (27%), Positives = 123/299 (41%), Gaps = 37/299 (12%)
Query: 24 GREILFQGFNWESCK---HDWWRNLERKVPDISKSGFTSVWLPPATHSFAP--------- 71
G EI+ QGF+W + +DW+ L ++ I+ GF+++W+P F+
Sbjct: 15 GDEIILQGFHWNVVREAPNDWYNILRQQAATIAADGFSAIWMPVPWRDFSSWSDGSKSGG 74
Query: 72 -EGYLPQNLYSLNSSYGSEHLLKALLHKMKQHKVRAMADIVINHRVGTTQGHGGKYNRYD 130
EGY + ++ N YGS+ L+ + V+ + D+V NH +G+ K
Sbjct: 75 GEGYFWHD-FNKNGRYGSDAQLRQAASALGGAGVKVLYDVVPNH---MNRGYPDKEINLP 130
Query: 131 GIPLSWDEHAVTSCTGGLGNGS-TGDNFHGVP---NIDHTQHF--VRKDIIAWLRWLRNT 184
W G N GD F G N H Q + R + LR+
Sbjct: 131 AGQGFWRNDCAD--PGNYPNDCDDGDRFIGGDADLNTGHPQVYGMFRDEFTN----LRSQ 184
Query: 185 VGFQDFRFDFARGYSAKYVKEYI-EGARPIFSVGEYWDSCNYNSHGLDYNQDSHRQRIIN 243
G FRFDF RGY+ + V ++ + A F VG+ W + + N S +Q I +
Sbjct: 185 YGAGGFRFDFVRGYAPERVNSWMTDSADNSFCVGQLWKGPSEYPNWDWRNTASWQQIIKD 244
Query: 244 WIDGTGQLSAAFDFTTKGILQEAVKGQFWRLRDAQGKPPGVMGWWPSRAVTFLDNHDTG 302
W D FDF K +Q + + P W AVTF+DNHDTG
Sbjct: 245 WSDRA--KCPVFDFALKERMQNGSIADWKHGLNGNPDPR-----WREVAVTFVDNHDTG 296
>pdb|1QI3|A Chain A, Mutant (D193n) Maltotetraose-Forming Exo-Amylase In
Complex With Maltotetraose
Length = 429
Score = 76.6 bits (187), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 82/299 (27%), Positives = 123/299 (41%), Gaps = 37/299 (12%)
Query: 24 GREILFQGFNWESCK---HDWWRNLERKVPDISKSGFTSVWLPPATHSFAP--------- 71
G EI+ QGF+W + +DW+ L ++ I+ GF+++W+P F+
Sbjct: 15 GDEIILQGFHWNVVREAPNDWYNILRQQAATIAADGFSAIWMPVPWRDFSSWSDGSKSGG 74
Query: 72 -EGYLPQNLYSLNSSYGSEHLLKALLHKMKQHKVRAMADIVINHRVGTTQGHGGKYNRYD 130
EGY + ++ N YGS+ L+ + V+ + D+V NH +G+ K
Sbjct: 75 GEGYFWHD-FNKNGRYGSDAQLRQAASALGGAGVKVLYDVVPNH---MNRGYPDKEINLP 130
Query: 131 GIPLSWDEHAVTSCTGGLGNGS-TGDNFHGVP---NIDHTQHF--VRKDIIAWLRWLRNT 184
W G N GD F G N H Q + R + LR+
Sbjct: 131 AGQGFWRNDCAD--PGNYPNDCDDGDRFIGGDADLNTGHPQVYGMFRDEFTN----LRSQ 184
Query: 185 VGFQDFRFDFARGYSAKYVKEYI-EGARPIFSVGEYWDSCNYNSHGLDYNQDSHRQRIIN 243
G FRF+F RGY+ + V ++ + A F VGE W + + N S +Q I +
Sbjct: 185 YGAGGFRFNFVRGYAPERVNSWMTDSADNSFCVGELWKGPSEYPNWDWRNTASWQQIIKD 244
Query: 244 WIDGTGQLSAAFDFTTKGILQEAVKGQFWRLRDAQGKPPGVMGWWPSRAVTFLDNHDTG 302
W D FDF K +Q + + P W AVTF+DNHDTG
Sbjct: 245 WSDRA--KCPVFDFALKERMQNGSIADWKHGLNGNPDPR-----WREVAVTFVDNHDTG 296
>pdb|1QI5|A Chain A, Mutant (D294n) Maltotetraose-Forming Exo-Amylase In
Complex With Maltotetraose
Length = 429
Score = 76.6 bits (187), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 82/299 (27%), Positives = 123/299 (41%), Gaps = 37/299 (12%)
Query: 24 GREILFQGFNWESCK---HDWWRNLERKVPDISKSGFTSVWLPPATHSFAP--------- 71
G EI+ QGF+W + +DW+ L ++ I+ GF+++W+P F+
Sbjct: 15 GDEIILQGFHWNVVREAPNDWYNILRQQAATIAADGFSAIWMPVPWRDFSSWSDGSKSGG 74
Query: 72 -EGYLPQNLYSLNSSYGSEHLLKALLHKMKQHKVRAMADIVINHRVGTTQGHGGKYNRYD 130
EGY + ++ N YGS+ L+ + V+ + D+V NH +G+ K
Sbjct: 75 GEGYFWHD-FNKNGRYGSDAQLRQAASALGGAGVKVLYDVVPNH---MNRGYPDKEINLP 130
Query: 131 GIPLSWDEHAVTSCTGGLGNGS-TGDNFHGVP---NIDHTQHF--VRKDIIAWLRWLRNT 184
W G N GD F G N H Q + R + LR+
Sbjct: 131 AGQGFWRNDCAD--PGNYPNDCDDGDRFIGGDADLNTGHPQVYGMFRDEFTN----LRSQ 184
Query: 185 VGFQDFRFDFARGYSAKYVKEYI-EGARPIFSVGEYWDSCNYNSHGLDYNQDSHRQRIIN 243
G FRFDF RGY+ + V ++ + A F VGE W + + N S +Q I +
Sbjct: 185 YGAGGFRFDFVRGYAPERVNSWMTDSADNSFCVGELWKGPSEYPNWDWRNTASWQQIIKD 244
Query: 244 WIDGTGQLSAAFDFTTKGILQEAVKGQFWRLRDAQGKPPGVMGWWPSRAVTFLDNHDTG 302
W D FDF K +Q + + P W AVTF+DNH+TG
Sbjct: 245 WSDRA--KCPVFDFALKERMQNGSIADWKHGLNGNPDPR-----WREVAVTFVDNHNTG 296
>pdb|1QPK|A Chain A, Mutant (D193g) Maltotetraose-Forming Exo-Amylase In
Complex With Maltotetraose
Length = 418
Score = 75.5 bits (184), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 82/299 (27%), Positives = 122/299 (40%), Gaps = 37/299 (12%)
Query: 24 GREILFQGFNWESCK---HDWWRNLERKVPDISKSGFTSVWLPPATHSFAP--------- 71
G EI+ QGF+W + +DW+ L ++ I+ GF+++W+P F+
Sbjct: 15 GDEIILQGFHWNVVREAPNDWYNILRQQAATIAADGFSAIWMPVPWRDFSSWSDGSKSGG 74
Query: 72 -EGYLPQNLYSLNSSYGSEHLLKALLHKMKQHKVRAMADIVINHRVGTTQGHGGKYNRYD 130
EGY + ++ N YGS+ L+ + V+ + D+V NH +G+ K
Sbjct: 75 GEGYFWHD-FNKNGRYGSDAQLRQAASALGGAGVKVLYDVVPNH---MNRGYPDKEINLP 130
Query: 131 GIPLSWDEHAVTSCTGGLGNGS-TGDNFHGVP---NIDHTQHF--VRKDIIAWLRWLRNT 184
W G N GD F G N H Q + R + LR+
Sbjct: 131 AGQGFWRNDCAD--PGNYPNDCDDGDRFIGGDADLNTGHPQVYGMFRDEFTN----LRSQ 184
Query: 185 VGFQDFRFDFARGYSAKYVKEYI-EGARPIFSVGEYWDSCNYNSHGLDYNQDSHRQRIIN 243
G FRF F RGY+ + V ++ + A F VGE W + + N S +Q I +
Sbjct: 185 YGAGGFRFGFVRGYAPERVNSWMTDSADNSFCVGELWKGPSEYPNWDWRNTASWQQIIKD 244
Query: 244 WIDGTGQLSAAFDFTTKGILQEAVKGQFWRLRDAQGKPPGVMGWWPSRAVTFLDNHDTG 302
W D FDF K +Q + + P W AVTF+DNHDTG
Sbjct: 245 WSDRA--KCPVFDFALKERMQNGSIADWKHGLNGNPDPR-----WREVAVTFVDNHDTG 296
>pdb|1QI4|A Chain A, Mutant (e219g) Maltotetraose-forming Exo-amylase In
Complex With Maltotetraose
Length = 429
Score = 75.5 bits (184), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 82/299 (27%), Positives = 122/299 (40%), Gaps = 37/299 (12%)
Query: 24 GREILFQGFNWESCK---HDWWRNLERKVPDISKSGFTSVWLPPATHSFAP--------- 71
G EI+ QGF+W + +DW+ L ++ I+ GF+++W+P F+
Sbjct: 15 GDEIILQGFHWNVVREAPNDWYNILRQQAATIAADGFSAIWMPVPWRDFSSWSDGSKSGG 74
Query: 72 -EGYLPQNLYSLNSSYGSEHLLKALLHKMKQHKVRAMADIVINHRVGTTQGHGGKYNRYD 130
EGY + ++ N YGS+ L+ + V+ + D+V NH +G+ K
Sbjct: 75 GEGYFWHD-FNKNGRYGSDAQLRQAASALGGAGVKVLYDVVPNH---MNRGYPDKEINLP 130
Query: 131 GIPLSWDEHAVTSCTGGLGNGS-TGDNFHGVP---NIDHTQHF--VRKDIIAWLRWLRNT 184
W G N GD F G N H Q + R + LR+
Sbjct: 131 AGQGFWRNDCAD--PGNYPNDCDDGDRFIGGDADLNTGHPQVYGMFRDEFTN----LRSQ 184
Query: 185 VGFQDFRFDFARGYSAKYVKEYI-EGARPIFSVGEYWDSCNYNSHGLDYNQDSHRQRIIN 243
G FRFDF RGY+ + V ++ + A F VG W + + N S +Q I +
Sbjct: 185 YGAGGFRFDFVRGYAPERVNSWMTDSADNSFCVGGLWKGPSEYPNWDWRNTASWQQIIKD 244
Query: 244 WIDGTGQLSAAFDFTTKGILQEAVKGQFWRLRDAQGKPPGVMGWWPSRAVTFLDNHDTG 302
W D FDF K +Q + + P W AVTF+DNHDTG
Sbjct: 245 WSDRA--KCPVFDFALKERMQNGSIADWKHGLNGNPDPR-----WREVAVTFVDNHDTG 296
>pdb|3BH4|A Chain A, High Resolution Crystal Structure Of Bacillus
Amyloliquefaciens Alpha-Amylase
pdb|3BH4|B Chain B, High Resolution Crystal Structure Of Bacillus
Amyloliquefaciens Alpha-Amylase
Length = 483
Score = 65.1 bits (157), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 78/350 (22%), Positives = 128/350 (36%), Gaps = 93/350 (26%)
Query: 28 LFQGFNWESCKH-DWWRNLERKVPDISKSGFTSVWLPPATHSFAPE--GYLPQNLYSL-- 82
L Q F W + W+ L+ +S G T+VW+PPA + GY P +LY L
Sbjct: 5 LMQYFEWYTPNDGQHWKRLQNDAEHLSDIGITAVWIPPAYKGLSQSDNGYGPYDLYDLGE 64
Query: 83 -------NSSYGSEHLLKALLHKMKQHKVRAMADIVINHRVGTTQ--------------- 120
+ YG++ L+ + + V+ D+V+NH+ G
Sbjct: 65 FQQKGTVRTKYGTKSELQDAIGSLHSRNVQVYGDVVLNHKAGADATEDVTAVEVNPANRN 124
Query: 121 ------------------GHGGKYN-------RYDGIPLSWDE-HAVTSCTGGLGNGSTG 154
G G Y+ +DG WDE ++ G G
Sbjct: 125 QETSEEYQIKAWTDFRFPGRGNTYSDFKWHWYHFDGA--DWDESRKISRIFKFRGEGKAW 182
Query: 155 D----------NFHGVPNIDHTQHFVRKDIIAWLRWLRNTVGFQDFRFDFARGYSAKYVK 204
D ++ ++D+ V + W W N + FR D A+ +++
Sbjct: 183 DWEVSSENGNYDYLMYADVDYDHPDVVAETKKWGIWYANELSLDGFRIDAAKHIKFSFLR 242
Query: 205 EYIEGAR-----PIFSVGEYWDSCNYNSHGLDYNQDSHRQRIINWIDGTGQLSAAFDFTT 259
++++ R +F+V EYW N+ G ++ N+++ T + FD
Sbjct: 243 DWVQAVRQATGKEMFTVAEYWQ----NNAG----------KLENYLNKTSFNQSVFDVPL 288
Query: 260 KGILQEAVKG----QFWRLRDAQGKPPGVMGWWPSRAVTFLDNHDTGSTQ 305
LQ A RL D V+ P +AVTF++NHDT Q
Sbjct: 289 HFNLQAASSQGGGYDMRRLLDGT-----VVSRHPEKAVTFVENHDTQPGQ 333
>pdb|1E3X|A Chain A, Native Structure Of Chimaeric Amylase From B.
Amyloliquefaciens And B. Licheniformis At 1.92a
pdb|1E3Z|A Chain A, Acarbose Complex Of Chimaeric Amylase From B.
Amyloliquefaciens And B. Licheniformis At 1.93a
pdb|1E40|A Chain A, TrisMALTOTRIOSE COMPLEX OF CHIMAERIC AMYLASE FROM B.
Amyloliquefaciens And B. Licheniformis At 2.2a
pdb|1E43|A Chain A, Native Structure Of Chimaeric Amylase From B.
Amyloliquefaciens And B. Licheniformis At 1.7a
Length = 483
Score = 64.7 bits (156), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 77/347 (22%), Positives = 130/347 (37%), Gaps = 87/347 (25%)
Query: 28 LFQGFNWESCKH-DWWRNLERKVPDISKSGFTSVWLPPATHSFAPE--GYLPQNLYSL-- 82
L Q F W + W+ L+ +S G T+VW+PPA + GY P +LY L
Sbjct: 5 LMQYFEWYTPNDGQHWKRLQNDAEHLSDIGITAVWIPPAYKGLSQSDNGYGPYDLYDLGE 64
Query: 83 -------NSSYGSEHLLKALLHKMKQHKVRAMADIVINHRVGTTQ--------------- 120
+ YG++ L+ + + V+ D+V+NH+ G
Sbjct: 65 FQQKGTVRTKYGTKSELQDAIGSLHSRNVQVYGDVVLNHKAGADATEDVTAVEVNPANRN 124
Query: 121 ------------------GHGGKYN-------RYDGIPLSWDE-HAVTSCTGGLGNGSTG 154
G G Y+ +DG WDE ++ G G
Sbjct: 125 QETSEEYQIKAWTDFRFPGRGNTYSDFKWHWYHFDGA--DWDESRKISRIFKFRGEGKAW 182
Query: 155 D----------NFHGVPNIDHTQHFVRKDIIAWLRWLRNTVGFQDFRFDFARGYSAKYVK 204
D ++ ++D+ V + W W N + FR D A+ +++
Sbjct: 183 DWEVSSENGNYDYLMYADVDYDHPDVVAETKKWGIWYANELSLDGFRIDAAKHIKFSFLR 242
Query: 205 EYIEGAR-----PIFSVGEYWDSCNYNSHGLDYNQDSHRQRIINWIDGTGQLSAAFDFTT 259
++++ R +F+V EYW N+ G ++ N+++ T + FD
Sbjct: 243 DWVQAVRQATGKEMFTVAEYWQ----NNAG----------KLENYLNKTSFNQSVFDVPL 288
Query: 260 KGILQEA-VKGQFWRLRDAQGKPPGVMGWWPSRAVTFLDNHDTGSTQ 305
LQ A +G + +R V+ P ++VTF+DNHDT Q
Sbjct: 289 HFNLQAASSQGGGYDMRKLLNGT--VVSKHPLKSVTFVDNHDTQPGQ 333
>pdb|2GUY|A Chain A, Orthorhombic Crystal Structure (Space Group P21212) Of
Aspergillus Niger Alpha-Amylase At 1.6 A Resolution
pdb|2GVY|A Chain A, Monoclinic Crystal Form Of Aspergillus Niger Alpha-Amylase
In Complex With Maltose At 1.8 A Resolution
pdb|2GVY|B Chain B, Monoclinic Crystal Form Of Aspergillus Niger Alpha-Amylase
In Complex With Maltose At 1.8 A Resolution
pdb|6TAA|A Chain A, Structure And Molecular Model Refinement Of Aspergillus
Oryzae (Taka) Alpha-Amylase: An Application Of The
Simulated-Annealing Method
pdb|7TAA|A Chain A, Family 13 Alpha Amylase In Complex With Acarbose
pdb|3KWX|A Chain A, Chemically Modified Taka Alpha-Amylase
Length = 478
Score = 62.0 bits (149), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 49/195 (25%), Positives = 83/195 (42%), Gaps = 18/195 (9%)
Query: 42 WRNLERKVPDISKSGFTSVWLPPATHSF--------APEGYLPQNLYSLNSSYGSEHLLK 93
W+ + K+ I GFT++W+ P T A GY Q++YSLN +YG+ LK
Sbjct: 42 WQGIIDKLDYIQGMGFTAIWITPVTAQLPQTTAYGDAYHGYWQQDIYSLNENYGTADDLK 101
Query: 94 ALLHKMKQHKVRAMADIVINHRVGTTQGHGGKYNRYDGIPLSWDEHAVTSC-------TG 146
AL + + + M D+V NH G Y+ + P S ++ C
Sbjct: 102 ALSSALHERGMYLMVDVVANHMGYDGAGSSVDYSVFK--PFSSQDYFHPFCFIQNYEDQT 159
Query: 147 GLGNGSTGDNFHGVPNIDHTQHFVRKDIIAWLRWLRNTVGFQDFRFDFARGYSAKYVKEY 206
+ + GDN +P++D T+ V+ + W+ L + R D + + Y
Sbjct: 160 QVEDCWLGDNTVSLPDLDTTKDVVKNEWYDWVGSLVSNYSIDGLRIDTVKHVQKDFWPGY 219
Query: 207 IEGARPIFSVGEYWD 221
+ A ++ +GE D
Sbjct: 220 NKAAG-VYCIGEVLD 233
>pdb|2TAA|A Chain A, Structure And Possible Catalytic Residues Of Taka-Amylase
A
pdb|2TAA|B Chain B, Structure And Possible Catalytic Residues Of Taka-Amylase
A
pdb|2TAA|C Chain C, Structure And Possible Catalytic Residues Of Taka-Amylase
A
Length = 478
Score = 59.7 bits (143), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 48/195 (24%), Positives = 82/195 (42%), Gaps = 18/195 (9%)
Query: 42 WRNLERKVPDISKSGFTSVWLPPATHSF--------APEGYLPQNLYSLNSSYGSEHLLK 93
W+ + K+ I GFT++W+ P T A GY ++YSLN +YG+ LK
Sbjct: 42 WQGIIDKLDYIQGMGFTAIWITPVTAQLPQDCAYGDAYTGYWQTDIYSLNENYGTADDLK 101
Query: 94 ALLHKMKQHKVRAMADIVINHRVGTTQGHGGKYNRYDGIPLSWDEHAVTSC-------TG 146
AL + + + M D+V NH G Y+ + P S ++ C
Sbjct: 102 ALSSALHERGMYLMVDVVANHMGYDGAGSSVDYSVFK--PFSSQDYFHPFCFIQNYEDQT 159
Query: 147 GLGNGSTGDNFHGVPNIDHTQHFVRKDIIAWLRWLRNTVGFQDFRFDFARGYSAKYVKEY 206
+ + GDN +P++D T+ V+ + W+ L + R D + + Y
Sbjct: 160 QVEDCWLGDNTVSLPDLDTTKDVVKNEWYDWVGSLVSNYSIDGLRIDTVKHVQKDFWPGY 219
Query: 207 IEGARPIFSVGEYWD 221
+ A ++ +GE D
Sbjct: 220 NKAAG-VYCIGEVLD 233
>pdb|1VJS|A Chain A, Structure Of Alpha-Amylase Precursor
Length = 483
Score = 55.1 bits (131), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 77/347 (22%), Positives = 128/347 (36%), Gaps = 89/347 (25%)
Query: 28 LFQGFNW---ESCKHDWWRNLERKVPDISKSGFTSVWLPPATH--SFAPEGYLPQNLYSL 82
L Q F W +H W+ L+ +++ G T+VW+PPA S A GY +LY L
Sbjct: 7 LMQYFEWYMPNDGQH--WKRLQNDSAYLAEHGITAVWIPPAYKGTSQADVGYGAYDLYDL 64
Query: 83 ---------NSSYGSEHLLKALLHKMKQHKVRAMADIVINHRVGTTQ------------- 120
+ YG++ L++ + + + D+VINH+ G
Sbjct: 65 GEFHQKGTVRTKYGTKGELQSAIKSLHSRDINVYGDVVINHKGGADATEDVTAVEVDPAD 124
Query: 121 --------------------GHGGKYN-------RYDGIPLSWDE----HAVTSCTGG-- 147
G G Y+ +DG WDE + + G
Sbjct: 125 RNRVISGEHLIKAWTHFHFPGRGSTYSDFKWHWYHFDGT--DWDESRKLNRIYKFQGKAW 182
Query: 148 ---LGNGSTGDNFHGVPNIDHTQHFVRKDIIAWLRWLRNTVGFQDFRFDFARGYSAKYVK 204
+ N + ++ +ID+ V +I W W N + FR D + +++
Sbjct: 183 DWEVSNENGNYDYLMYADIDYDHPDVAAEIKRWGTWYANELQLDGFRLDAVKHIKFSFLR 242
Query: 205 EYIEGAR-----PIFSVGEYWDSCNYNSHGLDYNQDSHRQRIINWIDGTGQLSAAFDFTT 259
+++ R +F+V EYW N G + N+++ T + FD
Sbjct: 243 DWVNHVREKTGKEMFTVAEYWQ----NDLGA----------LENYLNKTNFNHSVFDVPL 288
Query: 260 KGILQEA-VKGQFWRLRDAQGKPPGVMGWWPSRAVTFLDNHDTGSTQ 305
A +G + +R V+ P +AVTF+DNHDT Q
Sbjct: 289 HYQFHAASTQGGGYDMRKLLNST--VVSKHPLKAVTFVDNHDTQPGQ 333
>pdb|1BLI|A Chain A, Bacillus Licheniformis Alpha-Amylase
Length = 483
Score = 53.5 bits (127), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 76/347 (21%), Positives = 128/347 (36%), Gaps = 89/347 (25%)
Query: 28 LFQGFNW---ESCKHDWWRNLERKVPDISKSGFTSVWLPPATH--SFAPEGYLPQNLYSL 82
L Q F W +H W+ L+ +++ G T+VW+PPA S A GY +LY L
Sbjct: 7 LMQYFEWYMPNDGQH--WKRLQNDSAYLAEHGITAVWIPPAYKGTSQADVGYGAYDLYDL 64
Query: 83 ---------NSSYGSEHLLKALLHKMKQHKVRAMADIVINHRVGTTQ------------- 120
+ YG++ L++ + + + D+VINH+ G
Sbjct: 65 GEFHQKGTVRTKYGTKGELQSAIKSLHSRDINVYGDVVINHKGGADATEDVTAVEVDPAD 124
Query: 121 --------------------GHGGKYN-------RYDGIPLSWDE----HAVTSCTGGLG 149
G G Y+ +DG WDE + + G
Sbjct: 125 RNRVISGEHLIKAWTHFHFPGRGSTYSDFKWHWYHFDGT--DWDESRKLNRIYKFQGKAW 182
Query: 150 NGSTGDNFHG-----VPNIDHTQHFVRKDIIAWLRWLRNTVGFQDFRFDFARGYSAKYVK 204
+ + F +ID+ V +I W W N + FR D + +++
Sbjct: 183 DWEVSNEFGNYDYLMYADIDYDHPDVAAEIKRWGTWYANELQLDGFRLDAVKHIKFSFLR 242
Query: 205 EYIEGAR-----PIFSVGEYWDSCNYNSHGLDYNQDSHRQRIINWIDGTGQLSAAFDFTT 259
+++ R +F+V EYW +Y+ L+ N+++ T + FD
Sbjct: 243 DWVNHVREKTGKEMFTVAEYW---SYDLGALE-----------NYLNKTNFNHSVFDVPL 288
Query: 260 KGILQEA-VKGQFWRLRDAQGKPPGVMGWWPSRAVTFLDNHDTGSTQ 305
A +G + +R V+ P ++VTF+DNHDT Q
Sbjct: 289 HYQFHAASTQGGGYDMRKLLNGT--VVSKHPLKSVTFVDNHDTQPGQ 333
>pdb|1OB0|A Chain A, Kinetic Stabilization Of Bacillus Licheniformis-Amylase
Through Introduction Of Hydrophobic Residues At The
Surface
Length = 483
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 76/347 (21%), Positives = 128/347 (36%), Gaps = 89/347 (25%)
Query: 28 LFQGFNW---ESCKHDWWRNLERKVPDISKSGFTSVWLPPATH--SFAPEGYLPQNLYSL 82
L Q F W +H W+ L+ +++ G T+VW+PPA S A GY +LY L
Sbjct: 7 LMQYFEWYMPNDGQH--WKRLQNDSAYLAEHGITAVWIPPAYKGTSQADVGYGAYDLYDL 64
Query: 83 ---------NSSYGSEHLLKALLHKMKQHKVRAMADIVINHRVGTTQ------------- 120
+ YG++ L++ + + + D+VINH+ G
Sbjct: 65 GEFHQKGTVRTKYGTKGELQSAIKSLHSRDINVYGDVVINHKGGADATEDVTAVEVDPAD 124
Query: 121 --------------------GHGGKYN-------RYDGIPLSWDE----HAVTSCTGGLG 149
G G Y+ +DG WDE + + G
Sbjct: 125 RNRVISGEVLIKAWTHFHFPGRGSTYSDFKWHWYHFDGT--DWDESRKLNRIYKFQGKAW 182
Query: 150 NGSTGDNFHG-----VPNIDHTQHFVRKDIIAWLRWLRNTVGFQDFRFDFARGYSAKYVK 204
+ + F +ID+ V +I W W N + FR D + +++
Sbjct: 183 DWEVSNEFGNYDYLMYADIDYDHPDVVAEIKRWGTWYANELQLDGFRLDAVKHIKFSFLR 242
Query: 205 EYIEGAR-----PIFSVGEYWDSCNYNSHGLDYNQDSHRQRIINWIDGTGQLSAAFDFTT 259
+++ R +F+V EYW +Y+ L+ N+++ T + FD
Sbjct: 243 DWVNHVREKTGKEMFTVAEYW---SYDLGALE-----------NYLNKTNFNHSVFDVPL 288
Query: 260 KGILQEA-VKGQFWRLRDAQGKPPGVMGWWPSRAVTFLDNHDTGSTQ 305
A +G + +R V+ P ++VTF+DNHDT Q
Sbjct: 289 HYQFHAASTQGGGYDMRKLLNGT--VVSKHPLKSVTFVDNHDTQPGQ 333
>pdb|1UD2|A Chain A, Crystal Structure Of Calcium-Free Alpha-Amylase From
Bacillus Sp. Strain Ksm-K38 (Amyk38)
pdb|1UD4|A Chain A, Crystal Structure Of Calcium Free Alpha Amylase From
Bacillus Sp. Strain Ksm-K38 (Amyk38, In Calcium
Containing Solution)
pdb|1UD5|A Chain A, Crystal Structure Of Amyk38 With Rubidium Ion
pdb|1UD6|A Chain A, Crystal Structure Of Amyk38 With Potassium Ion
pdb|1UD8|A Chain A, Crystal Structure Of Amyk38 With Lithium Ion
Length = 480
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 68/323 (21%), Positives = 122/323 (37%), Gaps = 78/323 (24%)
Query: 42 WRNLERKVPDISKSGFTSVWLPPAT--HSFAPEGYLPQNLYSLN---------SSYGSEH 90
W L +S +G T++W+PPA +S A GY +LY L + YG++
Sbjct: 22 WNRLHDDAAALSDAGITAIWIPPAYKGNSQADVGYGAYDLYDLGEFNQKGTVRTKYGTKA 81
Query: 91 LLKALLHKMKQHKVRAMADIVINHRVGTTQGHG------GKYNRYDGIPLSWDEHAVTSC 144
L+ + +K + + D+V+NH++G NR+ I ++ A T
Sbjct: 82 QLERAIGSLKSNDINVYGDVVMNHKMGADFTEAVQAVQVNPTNRWQDISGAYTIDAWTGF 141
Query: 145 TGGLGNGSTGD------NFHGV-----------------------------------PNI 163
N + D +F+GV NI
Sbjct: 142 DFSGRNNAYSDFKWRWFHFNGVDWDQRYQENHIFRFANTNWNWRVDEENGNYDYLLGSNI 201
Query: 164 DHTQHFVRKDIIAWLRWLRNTVGFQDFRFDFARGYSAKYVKEYI-----EGARPIFSVGE 218
D + V+ ++ W W + + +R D + Y +++ E + +F VGE
Sbjct: 202 DFSHPEVQDELKDWGSWFTDELDLDGYRLDAIKHIPFWYTSDWVRHQRNEADQDLFVVGE 261
Query: 219 YWDSCNYNSHGLDYNQDSHRQRIINWIDGTGQLSAAFDFTTKGILQEAVKGQFWRLRDAQ 278
YW + L++ D +NW + ++F + + +G + +R+
Sbjct: 262 YWKD---DVGALEFYLDE-----MNWEMSLFDVPLNYNF-----YRASQQGGSYDMRNI- 307
Query: 279 GKPPGVMGWWPSRAVTFLDNHDT 301
++ P AVTF+DNHDT
Sbjct: 308 -LRGSLVEAHPMHAVTFVDNHDT 329
>pdb|1UD3|A Chain A, Crystal Structure Of Amyk38 N289h Mutant
Length = 480
Score = 52.8 bits (125), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 68/323 (21%), Positives = 122/323 (37%), Gaps = 78/323 (24%)
Query: 42 WRNLERKVPDISKSGFTSVWLPPAT--HSFAPEGYLPQNLYSLN---------SSYGSEH 90
W L +S +G T++W+PPA +S A GY +LY L + YG++
Sbjct: 22 WNRLHDDAAALSDAGITAIWIPPAYKGNSQADVGYGAYDLYDLGEFNQKGTVRTKYGTKA 81
Query: 91 LLKALLHKMKQHKVRAMADIVINHRVGTTQGHG------GKYNRYDGIPLSWDEHAVTSC 144
L+ + +K + + D+V+NH++G NR+ I ++ A T
Sbjct: 82 QLERAIGSLKSNDINVYGDVVMNHKMGADFTEAVQAVQVNPTNRWQDISGAYTIDAWTGF 141
Query: 145 TGGLGNGSTGD------NFHGV-----------------------------------PNI 163
N + D +F+GV NI
Sbjct: 142 DFSGRNNAYSDFKWRWFHFNGVDWDQRYQENHIFRFANTNWNWRVDEENGNYDYLLGSNI 201
Query: 164 DHTQHFVRKDIIAWLRWLRNTVGFQDFRFDFARGYSAKYVKEYI-----EGARPIFSVGE 218
D + V+ ++ W W + + +R D + Y +++ E + +F VGE
Sbjct: 202 DFSHPEVQDELKDWGSWFTDELDLDGYRLDAIKHIPFWYTSDWVRHQRNEADQDLFVVGE 261
Query: 219 YWDSCNYNSHGLDYNQDSHRQRIINWIDGTGQLSAAFDFTTKGILQEAVKGQFWRLRDAQ 278
YW + L++ D +NW + ++F + + +G + +R+
Sbjct: 262 YWKD---DVGALEFYLDE-----MNWEMSLFDVPLHYNF-----YRASQQGGSYDMRNI- 307
Query: 279 GKPPGVMGWWPSRAVTFLDNHDT 301
++ P AVTF+DNHDT
Sbjct: 308 -LRGSLVEAHPMHAVTFVDNHDT 329
>pdb|1HVX|A Chain A, Bacillus Stearothermophilus Alpha-Amylase
Length = 515
Score = 52.8 bits (125), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 79/343 (23%), Positives = 126/343 (36%), Gaps = 90/343 (26%)
Query: 42 WRNLERKVPDISKSGFTSVWLPPATH--SFAPEGYLPQNLYSL---------NSSYGSEH 90
W + + ++S G T++WLPPA S + GY +LY L + YG++
Sbjct: 23 WTKVANEANNLSSLGITALWLPPAYKGTSRSDVGYGVYDLYDLGEFNQKGAVRTKYGTKA 82
Query: 91 LLKALLHKMKQHKVRAMADIVINHR-----------------------VGTTQ------- 120
+ ++ AD+V +H+ GT Q
Sbjct: 83 QYLQAIQAAHAAGMQVYADVVFDHKGGADGTEWVDAVEVNPSDRNQEISGTYQIQAWTKF 142
Query: 121 ---GHGGKYNRY-------DGIPLSWDEHAVTSCT---GGLG----------NGSTGDNF 157
G G Y+ + DG+ WDE S G+G NG+
Sbjct: 143 DFPGRGNTYSSFKWRWYHFDGV--DWDESRKLSRIYKFRGIGKAWDWEVDTENGNYDYLM 200
Query: 158 HGVPNIDHTQHFVRKDIIAWLRWLRNTVGFQDFRFDFARGYSAKYVKEYIEGAR-----P 212
+ ++DH + V ++ +W +W NT FR D + + +++ R P
Sbjct: 201 YADLDMDHPE--VVTELKSWGKWYVNTTNIDGFRLDAVKHIKFSFFPDWLSYVRSQTGKP 258
Query: 213 IFSVGEYWDSCNYNSHGLDYNQDSHRQRIINWIDGTGQLSAAFDFTTKGILQEAVK-GQF 271
+F+VGEYW D N ++ N+I T + FD A K G
Sbjct: 259 LFTVGEYW--------SYDIN------KLHNYIMKTNGTMSLFDAPLHNKFYTASKSGGT 304
Query: 272 WRLRDAQGKPPGVMGWWPSRAVTFLDNHDTGSTQVPHDYRLKW 314
+ +R +M P+ AVTF+DNHDT Q + W
Sbjct: 305 FDMRTLMTNT--LMKDQPTLAVTFVDNHDTEPGQALQSWVDPW 345
>pdb|2AAA|A Chain A, Calcium Binding In Alpha-Amylases: An X-Ray Diffraction
Study At 2.1 Angstroms Resolution Of Two Enzymes From
Aspergillus
Length = 484
Score = 51.2 bits (121), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 45/190 (23%), Positives = 75/190 (39%), Gaps = 14/190 (7%)
Query: 42 WRNLERKVPDISKSGFTSVWLPPATHSF--------APEGYLPQNLYSLNSSYGSEHLLK 93
W+ + + I GFT++W+ P T A GY Q +Y +NS++G+ LK
Sbjct: 42 WQGIIDHLDYIEGMGFTAIWISPITEQLPQDTADGEAYHGYWQQKIYDVNSNFGTADNLK 101
Query: 94 ALLHKMKQHKVRAMADIVINHRVGTTQGHGGKYNRYDGIPLSWDEHAVTSCTG-----GL 148
+L + + M D+V +H G+ Y+ +D S H T +
Sbjct: 102 SLSDALHARGMYLMVDVVPDHMGYAGNGNDVDYSVFDPFDSSSYFHPYCLITDWDNLTMV 161
Query: 149 GNGSTGDNFHGVPNIDHTQHFVRKDIIAWLRWLRNTVGFQDFRFDFARGYSAKYVKEYIE 208
+ GD +P++D T+ VR W+ L + R D + Y
Sbjct: 162 EDCWEGDTIVSLPDLDTTETAVRTIWYDWVADLVSNYSVDGLRIDSVLEVQPDFFPGY-N 220
Query: 209 GARPIFSVGE 218
A ++ VGE
Sbjct: 221 KASGVYCVGE 230
>pdb|1W9X|A Chain A, Bacillus Halmapalus Alpha Amylase
Length = 481
Score = 50.1 bits (118), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 67/341 (19%), Positives = 118/341 (34%), Gaps = 85/341 (24%)
Query: 42 WRNLERKVPDISKSGFTSVWLPPATHSFAPE--GYLPQNLYSL---------NSSYGSEH 90
W L ++ G T++W+PPA + GY +LY L + YG+
Sbjct: 20 WNRLRDDASNLRNRGITAIWIPPAWKGTSQNDVGYGAYDLYDLGEFNQKGTVRTKYGTRS 79
Query: 91 LLKALLHKMKQHKVRAMADIVINHRVGTTQ------------------------------ 120
L++ +H +K + V+ D+V+NH+ G
Sbjct: 80 QLESAIHALKNNGVQVYGDVVMNHKGGADATENVLAVEVNPNNRNQEISGDYTIEAWTKF 139
Query: 121 ---GHGGKYN-------RYDGIPLSWDEHAVTSCTGGLGNGSTGD----------NFHGV 160
G G Y+ +DG+ G+G D ++
Sbjct: 140 DFPGRGNTYSDFKWRWYHFDGVDWDQSRQFQNRIYKFRGDGKAWDWEVDSENGNYDYLMY 199
Query: 161 PNIDHTQHFVRKDIIAWLRWLRNTVGFQDFRFDFARGYSAKYVKEYIEGAR-----PIFS 215
++D V ++ W W NT+ FR D + + ++++ R +F+
Sbjct: 200 ADVDMDHPEVVNELRRWGEWYTNTLNLDGFRIDAVKHIKYSFTRDWLTHVRNATGKEMFA 259
Query: 216 VGEYWDSCNYNSHGLDYNQDSHRQRIINWIDGTGQLSAAFDFTTKGILQEAVK--GQFWR 273
V E+W N G + N+++ T + FD L A G +
Sbjct: 260 VAEFWK----NDLGA----------LENYLNKTNWNHSVFDVPLHYNLYNASNSGGNYDM 305
Query: 274 LRDAQGKPPGVMGWWPSRAVTFLDNHDTGSTQVPHDYRLKW 314
+ G V+ P AVTF+DNHD+ + + +W
Sbjct: 306 AKLLNGT---VVQKHPMHAVTFVDNHDSQPGESLESFVQEW 343
>pdb|2GJP|A Chain A, Structure Of Bacillus Halmapalus Alpha-Amylase,
Crystallized With The Substrate Analogue Acarbose And
Maltose
pdb|2GJR|A Chain A, Structure Of Bacillus Halmapalus Alpha-Amylase Without Any
Substrate Analogues
Length = 485
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 67/341 (19%), Positives = 118/341 (34%), Gaps = 85/341 (24%)
Query: 42 WRNLERKVPDISKSGFTSVWLPPATHSFAPE--GYLPQNLYSL---------NSSYGSEH 90
W L ++ G T++W+PPA + GY +LY L + YG+
Sbjct: 24 WNRLRDDASNLRNRGITAIWIPPAWKGTSQNDVGYGAYDLYDLGEFNQKGTVRTKYGTRS 83
Query: 91 LLKALLHKMKQHKVRAMADIVINHRVGTTQ------------------------------ 120
L++ +H +K + V+ D+V+NH+ G
Sbjct: 84 QLESAIHALKNNGVQVYGDVVMNHKGGADATENVLAVEVNPNNRNQEISGDYTIEAWTKF 143
Query: 121 ---GHGGKYN-------RYDGIPLSWDEHAVTSCTGGLGNGSTGD----------NFHGV 160
G G Y+ +DG+ G+G D ++
Sbjct: 144 DFPGRGNTYSDFKWRWYHFDGVDWDQSRQFQNRIYKFRGDGKAWDWEVDSENGNYDYLMY 203
Query: 161 PNIDHTQHFVRKDIIAWLRWLRNTVGFQDFRFDFARGYSAKYVKEYIEGAR-----PIFS 215
++D V ++ W W NT+ FR D + + ++++ R +F+
Sbjct: 204 ADVDMDHPEVVNELRRWGEWYTNTLNLDGFRIDAVKHIKYSFTRDWLTHVRNATGKEMFA 263
Query: 216 VGEYWDSCNYNSHGLDYNQDSHRQRIINWIDGTGQLSAAFDFTTKGILQEAVK--GQFWR 273
V E+W N G + N+++ T + FD L A G +
Sbjct: 264 VAEFWK----NDLGA----------LENYLNKTNWNHSVFDVPLHYNLYNASNSGGNYDM 309
Query: 274 LRDAQGKPPGVMGWWPSRAVTFLDNHDTGSTQVPHDYRLKW 314
+ G V+ P AVTF+DNHD+ + + +W
Sbjct: 310 AKLLNGT---VVQKHPMHAVTFVDNHDSQPGESLESFVQEW 347
>pdb|1WZA|A Chain A, Crystal Structure Of Alpha-Amylase From H.Orenii
Length = 488
Score = 47.0 bits (110), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 53/240 (22%), Positives = 90/240 (37%), Gaps = 36/240 (15%)
Query: 52 ISKSGFTSVWLPPATHSFAPEGYLPQNLYSLNSSYGSEHLLKALLHKMKQHKVRAMADIV 111
I+ G +WL P S + GY + Y +N YG+ L+ Q ++ + D+
Sbjct: 44 IADLGVNGIWLMPIFKSPSYHGYDVTDYYKINPDYGTLEDFHKLVEAAHQRGIKVIIDLP 103
Query: 112 INHR-------VGTTQGHGGKYNRYDGIPLSWDEHAVTSCTGGLGNGST----------G 154
INH + ++ +Y Y W + L G G
Sbjct: 104 INHTSERHPWFLKASRDKNSEYRDY----YVWAGPDTDTKETKLDGGRVWHYSPTGMYYG 159
Query: 155 DNFHGVPNIDHTQHFVRKDIIAWLR-WLRNTVGFQDFRFDFARGY--SAKYVKEY----- 206
+ G+P++++ V++ +I + WL+ G FR D A A+Y K +
Sbjct: 160 YFWSGMPDLNYNNPEVQEKVIGIAKYWLKQ--GVDGFRLDGAMHIFPPAQYDKNFTWWEK 217
Query: 207 ----IEGARPIFSVGEYWDSCNYNSHGLDYNQDSHRQ-RIINWIDGTGQLSAAFDFTTKG 261
IE +P++ VGE WD + Y DS ++ + T + F F K
Sbjct: 218 FRQEIEEVKPVYLVGEVWDISETVAPYFKYGFDSTFNFKLAEAVIATAKAGFPFGFNKKA 277
>pdb|1BPL|A Chain A, Glycosyltransferase
Length = 189
Score = 45.4 bits (106), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 30/105 (28%), Positives = 49/105 (46%), Gaps = 16/105 (15%)
Query: 28 LFQGFNW---ESCKHDWWRNLERKVPDISKSGFTSVWLPPATH--SFAPEGYLPQNLYSL 82
L Q F W +H W+ L+ +++ G T+VW+PPA S A GY +LY L
Sbjct: 7 LMQYFEWYMPNDGQH--WKRLQNDSAYLAEHGITAVWIPPAYKGTSQADVGYGAYDLYDL 64
Query: 83 ---------NSSYGSEHLLKALLHKMKQHKVRAMADIVINHRVGT 118
+ YG++ L++ + + + D+VINH+ G
Sbjct: 65 GEFHQKGTVRTKYGTKGELQSAIKSLHSRDINVYGDVVINHKGGA 109
>pdb|1WP6|A Chain A, Crystal Structure Of Maltohexaose-producing Amylase From
Alkalophilic Bacillus Sp.707.
pdb|1WPC|A Chain A, Crystal Structure Of Maltohexaose-Producing Amylase
Complexed With Pseudo-Maltononaose
pdb|2D3L|A Chain A, Crystal Structure Of Maltohexaose-Producing Amylase From
Bacillus Sp.707 Complexed With Maltopentaose.
pdb|2D3N|A Chain A, Crystal Structure Of Maltohexaose-Producing Amylase From
Bacillus Sp.707 Complexed With Maltohexaose
Length = 485
Score = 44.7 bits (104), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 41/88 (46%), Gaps = 11/88 (12%)
Query: 42 WRNLERKVPDISKSGFTSVWLPPATHSFAPE--GYLPQNLYSLN---------SSYGSEH 90
W L ++ G T+VW+PPA + GY +LY L + YG+
Sbjct: 24 WNRLNSDASNLKSKGITAVWIPPAWKGASQNDVGYGAYDLYDLGEFNQKGTVRTKYGTRS 83
Query: 91 LLKALLHKMKQHKVRAMADIVINHRVGT 118
L+A + +K + ++ D+V+NH+ G
Sbjct: 84 QLQAAVTSLKNNGIQVYGDVVMNHKGGA 111
Score = 41.6 bits (96), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 41/159 (25%), Positives = 65/159 (40%), Gaps = 22/159 (13%)
Query: 162 NIDHTQHFVRKDIIAWLRWLRNTVGFQDFRFDFARGYSAKYVKEYIEGARP-----IFSV 216
+ID V ++ W W NT+G FR D + + +++I R +F+V
Sbjct: 205 DIDMDHPEVVNELRNWGVWYTNTLGLDGFRIDAVKHIKYSFTRDWINHVRSATGKNMFAV 264
Query: 217 GEYWDSCNYNSHGLDYNQDSHRQRIINWIDGTGQLSAAFDFTTKGILQEAVK-GQFWRLR 275
E+W N G I N++ T + FD L A K G + +R
Sbjct: 265 AEFWK----NDLGA----------IENYLQKTNWNHSVFDVPLHYNLYNASKSGGNYDMR 310
Query: 276 DAQGKPPGVMGWWPSRAVTFLDNHDTGSTQVPHDYRLKW 314
+ V+ PS AVTF+DNHD+ + + +W
Sbjct: 311 NIFNGT--VVQRHPSHAVTFVDNHDSQPEEALESFVEEW 347
>pdb|2DIE|A Chain A, Alkaline Alpha-Amylase Amyk From Bacillus Sp. Ksm-1378
Length = 485
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 66/340 (19%), Positives = 112/340 (32%), Gaps = 83/340 (24%)
Query: 42 WRNLERKVPDISKSGFTSVWLPPATHSFAPE--GYLPQNLYSLN---------SSYGSEH 90
W L ++ G T+VW+PPA + GY +LY L + YG+
Sbjct: 24 WNRLRDDAANLKSKGITAVWIPPAWKGTSQNDVGYGAYDLYDLGEFNQKGTVRTKYGTRS 83
Query: 91 LLKALLHKMKQHKVRA----------------MADIVINHRVGTTQGHGGKYN------- 127
L+ + +K + ++ M + V +R Q G+Y
Sbjct: 84 QLQGAVTSLKNNGIQVYGDVVMNHKGGADGTEMVNAVEVNRSNRNQEISGEYTIEAWTKF 143
Query: 128 -----------------RYDGIPLSWDEHAVTSCTGGLGNGSTGD----------NFHGV 160
+DG G G D ++
Sbjct: 144 DFPGRGNTHSNFKWRWYHFDGTDWDQSRQLQNKIYKFRGTGKAWDWEVDIENGNYDYLMY 203
Query: 161 PNIDHTQHFVRKDIIAWLRWLRNTVGFQDFRFDFARGYSAKYVKEYIEGAR-----PIFS 215
+ID V ++ W W NT+ FR D + Y ++++ R P+F+
Sbjct: 204 ADIDMDHPEVINELRNWGVWYTNTLNLDGFRIDAVKHIKYSYTRDWLTHVRNTTGKPMFA 263
Query: 216 VGEYWDSCNYNSHGLDYNQDSHRQRIINWIDGTGQLSAAFDFTTKGILQEAVK-GQFWRL 274
V E+W + I N+++ T + FD L A G ++ +
Sbjct: 264 VAEFW--------------KNDLAAIENYLNKTSWNHSVFDVPLHYNLYNASNSGGYFDM 309
Query: 275 RDAQGKPPGVMGWWPSRAVTFLDNHDTGSTQVPHDYRLKW 314
R+ V+ P AVTF+DNHD+ + + W
Sbjct: 310 RNILNGS--VVQKHPIHAVTFVDNHDSQPGEALESFVQSW 347
>pdb|1LWH|A Chain A, Crystal Structure Of T. Maritima
4-Alpha-Glucanotransferase
pdb|1LWH|B Chain B, Crystal Structure Of T. Maritima
4-Alpha-Glucanotransferase
pdb|1LWJ|A Chain A, Crystal Structure Of T. Maritima 4-Alpha-
GlucanotransferaseACARBOSE COMPLEX
pdb|1LWJ|B Chain B, Crystal Structure Of T. Maritima 4-Alpha-
GlucanotransferaseACARBOSE COMPLEX
Length = 441
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 35/73 (47%)
Query: 42 WRNLERKVPDISKSGFTSVWLPPATHSFAPEGYLPQNLYSLNSSYGSEHLLKALLHKMKQ 101
+R L+ V + + G VWL P S + GY + YS + YGSE K ++
Sbjct: 22 FRGLKNAVSYLKELGIDFVWLMPVFSSISFHGYDVVDFYSFKAEYGSEREFKEMIEAFHD 81
Query: 102 HKVRAMADIVINH 114
++ + D+ I+H
Sbjct: 82 SGIKVVLDLPIHH 94
>pdb|2YA1|A Chain A, Product Complex Of A Multi-Modular Glycogen-Degrading
Pneumococcal Virulence Factor Spua
Length = 1014
Score = 42.4 bits (98), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 40/165 (24%), Positives = 65/165 (39%), Gaps = 38/165 (23%)
Query: 73 GYLPQNLYSLNSSYGSE--------HLLKALLHKMKQHKVRAMADIVINHRVGTTQGHGG 124
GY PQN +SL Y S+ K L++++ + + A+ D+V NH
Sbjct: 537 GYDPQNYFSLTGMYSSDPKNPEKRIAEFKNLINEIHKRGMGAILDVVYNHTAKVDLFEDL 596
Query: 125 KYNRY-----DGIPLSWDEHAVTSCTGGLGNGSTGDNFHGVPNIDHTQHFVRKDIIAWLR 179
+ N Y DG P + G G G T H ++ +I ++
Sbjct: 597 EPNYYHFMDADGTPRT-----------SFGGGRLG----------TTHHMTKRLLIDSIK 635
Query: 180 WLRNTVGFQDFRFDFARGYSAKYVKEYIEGARP----IFSVGEYW 220
+L +T FRFD + A ++E + AR + +GE W
Sbjct: 636 YLVDTYKVDGFRFDMMGDHDAASIEEAYKAARALNPNLIMLGEGW 680
>pdb|2YA2|A Chain A, Catalytic Module Of The Multi-Modular Glycogen-Degrading
Pneumococcal Virulence Factor Spua In Complex With An
Inhibitor
Length = 708
Score = 42.0 bits (97), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 40/165 (24%), Positives = 65/165 (39%), Gaps = 38/165 (23%)
Query: 73 GYLPQNLYSLNSSYGSE--------HLLKALLHKMKQHKVRAMADIVINHRVGTTQGHGG 124
GY PQN +SL Y S+ K L++++ + + A+ D+V NH
Sbjct: 231 GYDPQNYFSLTGMYSSDPKNPEKRIAEFKNLINEIHKRGMGAILDVVYNHTAKVDLFEDL 290
Query: 125 KYNRY-----DGIPLSWDEHAVTSCTGGLGNGSTGDNFHGVPNIDHTQHFVRKDIIAWLR 179
+ N Y DG P + G G G T H ++ +I ++
Sbjct: 291 EPNYYHFMDADGTPRT-----------SFGGGRLG----------TTHHMTKRLLIDSIK 329
Query: 180 WLRNTVGFQDFRFDFARGYSAKYVKEYIEGARP----IFSVGEYW 220
+L +T FRFD + A ++E + AR + +GE W
Sbjct: 330 YLVDTYKVDGFRFDMMGDHDAASIEEAYKAARALNPNLIMLGEGW 374
>pdb|2YA0|A Chain A, Catalytic Module Of The Multi-Modular Glycogen-Degrading
Pneumococcal Virulence Factor Spua
Length = 714
Score = 42.0 bits (97), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 41/165 (24%), Positives = 66/165 (40%), Gaps = 38/165 (23%)
Query: 73 GYLPQNLYSLNSSYGSE--------HLLKALLHKMKQHKVRAMADIVINHRVGTTQGHGG 124
GY PQN +SL Y S+ K L++++ + + A+ D+V NH
Sbjct: 230 GYDPQNYFSLTGMYSSDPKNPEKRIAEFKNLINEIHKRGMGAILDVVYNHTAKVDLFEDL 289
Query: 125 KYNRY-----DGIPLSWDEHAVTSCTGGLGNGSTGDNFHGVPNIDHTQHFVRKDIIAWLR 179
+ N Y DG P TS GG + T H ++ +I ++
Sbjct: 290 EPNYYHFMDADGTPR-------TSFGGG--------------RLGTTHHMTKRLLIDSIK 328
Query: 180 WLRNTVGFQDFRFDFARGYSAKYVKEYIEGARP----IFSVGEYW 220
+L +T FRFD + A ++E + AR + +GE W
Sbjct: 329 YLVDTYKVDGFRFDMMGDHDAASIEEAYKAARALNPNLIMLGEGW 373
>pdb|4AIE|A Chain A, Structure Of Glucan-1,6-Alpha-Glucosidase From
Lactobacillus Acidophilus Ncfm
Length = 549
Score = 41.6 bits (96), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 41/83 (49%), Gaps = 5/83 (6%)
Query: 52 ISKSGFTSVWLPPATHSFAPE-GYLPQNLYSLNSSYGSEHLLKALLHKMKQHKVRAMADI 110
+ K G ++WL P S + GY + +++ YG+ + L+ K K+H ++ + D+
Sbjct: 41 LEKLGIDAIWLSPVYQSPGVDNGYDISDYEAIDPQYGTMADMDELISKAKEHHIKIVMDL 100
Query: 111 VINHRVGT----TQGHGGKYNRY 129
V+NH + GK N+Y
Sbjct: 101 VVNHTSDQHKWFVEAKKGKDNQY 123
>pdb|1BPL|B Chain B, Glycosyltransferase
Length = 294
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 37/150 (24%), Positives = 61/150 (40%), Gaps = 22/150 (14%)
Query: 162 NIDHTQHFVRKDIIAWLRWLRNTVGFQDFRFDFARGYSAKYVKEYIEGARP-----IFSV 216
+ID+ V +I W W N + FR D + ++++++ R +F+V
Sbjct: 11 DIDYDHPDVAAEIKRWGTWYANELQLDGFRLDAVKHIKFSFLRDWVNHVREKTGKEMFTV 70
Query: 217 GEYWDSCNYNSHGLDYNQDSHRQRIINWIDGTGQLSAAFDFTTKGILQEA-VKGQFWRLR 275
EYW N G + N+++ T + FD A +G + +R
Sbjct: 71 AEYWQ----NDLGA----------LENYLNKTNFNHSVFDVPLHYQFHAASTQGGGYDMR 116
Query: 276 DAQGKPPGVMGWWPSRAVTFLDNHDTGSTQ 305
V+ P +AVTF+DNHDT Q
Sbjct: 117 KLLNST--VVSKHPLKAVTFVDNHDTQPGQ 144
>pdb|1M53|A Chain A, Crystal Structure Of Isomaltulose Synthase (Pali) From
Klebsiella Sp. Lx3
Length = 570
Score = 38.5 bits (88), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 37/75 (49%), Gaps = 5/75 (6%)
Query: 43 RNLERKVPDISKSGFTSVWLPPATHSFAPE---GYLPQNLYSLNSSYGSEHLLKALLHKM 99
R + K+ + G ++W+ P H +P GY N + YG+ +L+ +M
Sbjct: 45 RGIIEKLDYLKSLGIDAIWINP--HYDSPNTDNGYDISNYRQIMKEYGTMEDFDSLVAEM 102
Query: 100 KQHKVRAMADIVINH 114
K+ +R M D+VINH
Sbjct: 103 KKRNMRLMIDVVINH 117
>pdb|1VIW|A Chain A, Tenebrio Molitor Alpha-Amylase-Inhibitor Complex
Length = 471
Score = 38.1 bits (87), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 72/330 (21%), Positives = 119/330 (36%), Gaps = 62/330 (18%)
Query: 19 AVIRNGREILFQGFNWESCKHDWWRNLERKVPD-ISKSGFTSVWLPPATHSFAPEG---- 73
A +GR + F W+ W ++ + + GF V + P +G
Sbjct: 4 ANFASGRNSIVHLFEWK------WNDIADECERFLQPQGFGGVQISPPNEYLVADGRPWW 57
Query: 74 --YLPQNLYSLNSSYGSEHLLKALLHKMKQHKVRAMADIVINHRVGTTQ-GHGGKYNRYD 130
Y P + Y +N+ G+E + + VR D VINH G G G +D
Sbjct: 58 ERYQPVS-YIINTRSGNESAFTDMTRRCNDAGVRIYVDAVINHMTGMNGVGTSGSSADHD 116
Query: 131 GIPLSWDEHAVTSCTGGLGNGSTGDNFHGVPNIDHTQHFVRKDIIAWLRWLRNT------ 184
G+ + AV +G + +N+ N+ + + +D+ A ++R
Sbjct: 117 GM----NYPAVPYGSGDFHSPCEVNNYQDADNVRNCELVGLRDLNAGSDYVRGVLIDYMN 172
Query: 185 ----VGFQDFRFDFARGYSAKYVKEYIEGARPIFSVGEYWDSCNYNSHGLDYN-QDSHRQ 239
+G FR D A+ S + +G + N N+ DY D R
Sbjct: 173 HMIDLGVAGFRVDAAKHMSPGDLSVIFDGLK------------NLNT---DYGFADGARP 217
Query: 240 RII-NWIDGTGQLSAAFDFTTKGILQEAVKG-QFWRLRDAQGKPPGVMGWWPS------- 290
I ID G+ + ++T G + E G + + W P
Sbjct: 218 FIYQEVIDLGGEAISKNEYTGFGCVLEFQFGVSLGNAFQGGNQLKNLANWGPEWGLLEGL 277
Query: 291 RAVTFLDNHD---TGSTQV-----PHDYRL 312
AV F+DNHD TG +Q+ P Y++
Sbjct: 278 DAVVFVDNHDNQRTGGSQILTYKNPKPYKM 307
>pdb|2E8Y|A Chain A, Crystal Structure Of Pullulanase Type I From Bacillus
Subtilis Str. 168
pdb|2E8Y|B Chain B, Crystal Structure Of Pullulanase Type I From Bacillus
Subtilis Str. 168
pdb|2E8Z|A Chain A, Crystal Structure Of Pullulanase Type I From Bacillus
Subtilis Str. 168 Complexed With Alpha-Cyclodextrin
pdb|2E8Z|B Chain B, Crystal Structure Of Pullulanase Type I From Bacillus
Subtilis Str. 168 Complexed With Alpha-Cyclodextrin
pdb|2E9B|A Chain A, Crystal Structure Of Pullulanase Type I From Bacillus
Subtilis Str. 168 Complexed With Maltose
pdb|2E9B|B Chain B, Crystal Structure Of Pullulanase Type I From Bacillus
Subtilis Str. 168 Complexed With Maltose
Length = 718
Score = 37.4 bits (85), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 42/159 (26%), Positives = 59/159 (37%), Gaps = 20/159 (12%)
Query: 67 HSFAPEGYLPQNLYSLNSSYGSEHLLKALLHKMKQHKVRAMADIVINHRVGTTQGHGGKY 126
H FAPEG N + + LK +++ + QH +R + D+V NH K
Sbjct: 296 HFFAPEGSYASNPHDPQTRKTE---LKQMINTLHQHGLRVILDVVFNHVYKRENSPFEK- 351
Query: 127 NRYDGIPLSWDEHAVTSCTGGLGNGSTGDNFHGVPNIDHTQHFVRKDIIAWLRWLRNTVG 186
G DE S G+GN +I + RK I + +
Sbjct: 352 -TVPGYFFRHDECGKPSNGTGVGN-----------DIASERRMARKFIADCVVYWLEEYN 399
Query: 187 FQDFRFDFARGY---SAKYVKEYIEGARP-IFSVGEYWD 221
FRFD + Y+KE A+P I GE WD
Sbjct: 400 VDGFRFDLLGILDIDTVLYMKEKATKAKPGILLFGEGWD 438
>pdb|1TMQ|A Chain A, Structure Of Tenebrio Molitor Larval Alpha-Amylase In
Complex With Ragi Bifunctional Inhibitor
pdb|1CLV|A Chain A, Yellow Meal Worm Alpha-Amylase In Complex With The
Amaranth Alpha-Amylase Inhibitor
pdb|1JAE|A Chain A, Structure Of Tenebrio Molitor Larval Alpha-Amylase
Length = 471
Score = 37.4 bits (85), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 74/331 (22%), Positives = 120/331 (36%), Gaps = 64/331 (19%)
Query: 19 AVIRNGREILFQGFNWESCKHDWWRNLERKVPD-ISKSGFTSVWLPPATHSFAPEG---- 73
A +GR + F W+ W ++ + + GF V + P +G
Sbjct: 4 ANFASGRNSIVHLFEWK------WNDIADECERFLQPQGFGGVQISPPNEYLVADGRPWW 57
Query: 74 --YLPQNLYSLNSSYGSEHLLKALLHKMKQHKVRAMADIVINHRVGT----TQGHGGKYN 127
Y P + Y +N+ G E + + VR D VINH G T G ++
Sbjct: 58 ERYQPVS-YIINTRSGDESAFTDMTRRCNDAGVRIYVDAVINHMTGMNGVGTSGSSADHD 116
Query: 128 --RYDGIPL-SWDEHAVTSCTGGLGNGSTGDNFH-----GVPNIDHTQHFVRKDIIAWLR 179
Y +P S D H+ + N DN G+ +++ +VR +I ++
Sbjct: 117 GMNYPAVPYGSGDFHSPCE----VNNYQDADNVRNCELVGLRDLNQGSDYVRGVLIDYMN 172
Query: 180 WLRNTVGFQDFRFDFARGYSAKYVKEYIEGARPIFSVGEYWDSCNYNSHGLDYN-QDSHR 238
+ + +G FR D A+ S + G + N N+ DY D R
Sbjct: 173 HMID-LGVAGFRVDAAKHMSPGDLSVIFSGLK------------NLNT---DYGFADGAR 216
Query: 239 QRII-NWIDGTGQLSAAFDFTTKGILQEAVKG-QFWRLRDAQGKPPGVMGWWPS------ 290
I ID G+ + ++T G + E G + + W P
Sbjct: 217 PFIYQEVIDLGGEAISKNEYTGFGCVLEFQFGVSLGNAFQGGNQLKNLANWGPEWGLLEG 276
Query: 291 -RAVTFLDNHD---TGSTQV-----PHDYRL 312
AV F+DNHD TG +Q+ P Y++
Sbjct: 277 LDAVVFVDNHDNQRTGGSQILTYKNPKPYKM 307
>pdb|3GBD|A Chain A, Crystal Structure Of The Isomaltulose Synthase Smua From
Protaminobacter Rubrum
pdb|3GBE|A Chain A, Crystal Structure Of The Isomaltulose Synthase Smua From
Protaminobacter Rubrum In Complex With The Inhibitor
Deoxynojirimycin
Length = 558
Score = 36.2 bits (82), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 32/62 (51%), Gaps = 5/62 (8%)
Query: 56 GFTSVWLPPATHSFAPE---GYLPQNLYSLNSSYGSEHLLKALLHKMKQHKVRAMADIVI 112
G ++W+ P H +P GY ++ + YG+ L+ +MK+ +R M D+VI
Sbjct: 44 GIDAIWINP--HYDSPNTDNGYDIRDYRKIMKEYGTMEDFDRLISEMKKRNMRLMIDVVI 101
Query: 113 NH 114
NH
Sbjct: 102 NH 103
>pdb|3VM5|A Chain A, Recombinant Medaka Fish Alpha-Amylase Expressed In Yeast
Pichia Pastoris
Length = 505
Score = 36.2 bits (82), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 29/110 (26%), Positives = 44/110 (40%), Gaps = 14/110 (12%)
Query: 22 RNGREILFQGFNWESCKHDWWRNLERKVPD-ISKSGFTSVWL-PPATHSFAPEGYLP--- 76
R+GR + F W W ++ + + GF V + PP H + P
Sbjct: 7 RDGRTAIVHLFEWR------WADIAAECERFLGPKGFAGVQISPPNEHILVSSPWRPWWQ 60
Query: 77 --QNL-YSLNSSYGSEHLLKALLHKMKQHKVRAMADIVINHRVGTTQGHG 123
Q + Y+L S G E+ L+ ++ + V D VINH G G G
Sbjct: 61 RYQPISYNLCSRSGGENELRDMITRCNNVGVNVYVDAVINHMCGAGGGEG 110
>pdb|1UOK|A Chain A, Crystal Structure Of B. Cereus Oligo-1,6-Glucosidase
Length = 558
Score = 35.8 bits (81), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 19/73 (26%), Positives = 36/73 (49%), Gaps = 1/73 (1%)
Query: 43 RNLERKVPDISKSGFTSVWLPPATHSFAPE-GYLPQNLYSLNSSYGSEHLLKALLHKMKQ 101
R + K+ + + G +WL P S + GY + + + +G+ LLH+M +
Sbjct: 31 RGIISKLDYLKELGIDVIWLSPVYESPNDDNGYDISDYCKIMNEFGTMEDWDELLHEMHE 90
Query: 102 HKVRAMADIVINH 114
++ M D+V+NH
Sbjct: 91 RNMKLMMDLVVNH 103
>pdb|4H2C|A Chain A, Trehalulose Synthase Mutb R284c Mutant
Length = 557
Score = 35.4 bits (80), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 20/76 (26%), Positives = 37/76 (48%), Gaps = 5/76 (6%)
Query: 42 WRNLERKVPDISKSGFTSVWLPPATHSFAPE---GYLPQNLYSLNSSYGSEHLLKALLHK 98
++ L K+ + G ++W+ P H +P GY + + YG+ L+ +
Sbjct: 31 FKGLTEKLDYLKGLGIDAIWINP--HYASPNTDNGYDISDYREVMKEYGTMEDFDRLMAE 88
Query: 99 MKQHKVRAMADIVINH 114
+K+ +R M D+VINH
Sbjct: 89 LKKRGMRLMVDVVINH 104
>pdb|2PWE|A Chain A, Crystal Structure Of The Mutb E254q Mutant In Complex With
The Substrate Sucrose
pdb|2PWE|B Chain B, Crystal Structure Of The Mutb E254q Mutant In Complex With
The Substrate Sucrose
Length = 556
Score = 35.4 bits (80), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 20/76 (26%), Positives = 37/76 (48%), Gaps = 5/76 (6%)
Query: 42 WRNLERKVPDISKSGFTSVWLPPATHSFAPE---GYLPQNLYSLNSSYGSEHLLKALLHK 98
++ L K+ + G ++W+ P H +P GY + + YG+ L+ +
Sbjct: 30 FKGLTEKLDYLKGLGIDAIWINP--HYASPNTDNGYDISDYREVMKEYGTMEDFDRLMAE 87
Query: 99 MKQHKVRAMADIVINH 114
+K+ +R M D+VINH
Sbjct: 88 LKKRGMRLMVDVVINH 103
>pdb|2PWG|A Chain A, Crystal Structure Of The Trehalulose Synthase Mutb From
Pseudomonas Mesoacidophila Mx-45 Complexed To The
Inhibitor Castanospermine
pdb|2PWG|B Chain B, Crystal Structure Of The Trehalulose Synthase Mutb From
Pseudomonas Mesoacidophila Mx-45 Complexed To The
Inhibitor Castanospermine
pdb|2PWH|A Chain A, Crystal Structure Of The Trehalulose Synthase Mutb From
Pseudomonas Mesoacidophila Mx-45
pdb|2PWH|B Chain B, Crystal Structure Of The Trehalulose Synthase Mutb From
Pseudomonas Mesoacidophila Mx-45
Length = 556
Score = 35.4 bits (80), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 20/76 (26%), Positives = 37/76 (48%), Gaps = 5/76 (6%)
Query: 42 WRNLERKVPDISKSGFTSVWLPPATHSFAPE---GYLPQNLYSLNSSYGSEHLLKALLHK 98
++ L K+ + G ++W+ P H +P GY + + YG+ L+ +
Sbjct: 30 FKGLTEKLDYLKGLGIDAIWINP--HYASPNTDNGYDISDYREVMKEYGTMEDFDRLMAE 87
Query: 99 MKQHKVRAMADIVINH 114
+K+ +R M D+VINH
Sbjct: 88 LKKRGMRLMVDVVINH 103
>pdb|2PWF|A Chain A, Crystal Structure Of The Mutb D200a Mutant In Complex With
Glucose
pdb|2PWF|B Chain B, Crystal Structure Of The Mutb D200a Mutant In Complex With
Glucose
pdb|2PWF|C Chain C, Crystal Structure Of The Mutb D200a Mutant In Complex With
Glucose
pdb|2PWF|D Chain D, Crystal Structure Of The Mutb D200a Mutant In Complex With
Glucose
Length = 556
Score = 35.4 bits (80), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 20/76 (26%), Positives = 37/76 (48%), Gaps = 5/76 (6%)
Query: 42 WRNLERKVPDISKSGFTSVWLPPATHSFAPE---GYLPQNLYSLNSSYGSEHLLKALLHK 98
++ L K+ + G ++W+ P H +P GY + + YG+ L+ +
Sbjct: 30 FKGLTEKLDYLKGLGIDAIWINP--HYASPNTDNGYDISDYREVMKEYGTMEDFDRLMAE 87
Query: 99 MKQHKVRAMADIVINH 114
+K+ +R M D+VINH
Sbjct: 88 LKKRGMRLMVDVVINH 103
>pdb|1ZJA|A Chain A, Crystal Structure Of The Trehalulose Synthase Mutb From
Pseudomonas Mesoacidophila Mx-45 (Triclinic Form)
pdb|1ZJA|B Chain B, Crystal Structure Of The Trehalulose Synthase Mutb From
Pseudomonas Mesoacidophila Mx-45 (Triclinic Form)
pdb|1ZJB|A Chain A, Crystal Structure Of The Trehalulose Synthase Mutb From
Pseudomonas Mesoacidophila Mx-45 (Monoclinic Form)
pdb|1ZJB|B Chain B, Crystal Structure Of The Trehalulose Synthase Mutb From
Pseudomonas Mesoacidophila Mx-45 (Monoclinic Form)
pdb|2PWD|A Chain A, Crystal Structure Of The Trehalulose Synthase Mutb From
Pseudomonas Mesoacidophila Mx-45 Complexed To The
Inhibitor Deoxynojirmycin
pdb|2PWD|B Chain B, Crystal Structure Of The Trehalulose Synthase Mutb From
Pseudomonas Mesoacidophila Mx-45 Complexed To The
Inhibitor Deoxynojirmycin
Length = 557
Score = 35.4 bits (80), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 20/76 (26%), Positives = 37/76 (48%), Gaps = 5/76 (6%)
Query: 42 WRNLERKVPDISKSGFTSVWLPPATHSFAPE---GYLPQNLYSLNSSYGSEHLLKALLHK 98
++ L K+ + G ++W+ P H +P GY + + YG+ L+ +
Sbjct: 31 FKGLTEKLDYLKGLGIDAIWINP--HYASPNTDNGYDISDYREVMKEYGTMEDFDRLMAE 88
Query: 99 MKQHKVRAMADIVINH 114
+K+ +R M D+VINH
Sbjct: 89 LKKRGMRLMVDVVINH 104
>pdb|4GI6|A Chain A, Crystal Structure Of The Mutb F164l Mutant In Complex With
Glucose
pdb|4GI6|B Chain B, Crystal Structure Of The Mutb F164l Mutant In Complex With
Glucose
pdb|4GI8|A Chain A, Crystal Structure Of The Mutb F164l Mutant From Crystals
Soaked With The Substrate Sucrose
pdb|4GI8|B Chain B, Crystal Structure Of The Mutb F164l Mutant From Crystals
Soaked With The Substrate Sucrose
pdb|4GI9|A Chain A, Crystal Structure Of The Mutb F164l Mutant From Crystals
Soaked With Trehalulose
pdb|4GI9|B Chain B, Crystal Structure Of The Mutb F164l Mutant From Crystals
Soaked With Trehalulose
pdb|4GIA|A Chain A, Crystal Structure Of The Mutb F164l Mutant From Crystals
Soaked With Isomaltulose
pdb|4GIA|B Chain B, Crystal Structure Of The Mutb F164l Mutant From Crystals
Soaked With Isomaltulose
Length = 557
Score = 35.4 bits (80), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 20/76 (26%), Positives = 37/76 (48%), Gaps = 5/76 (6%)
Query: 42 WRNLERKVPDISKSGFTSVWLPPATHSFAPE---GYLPQNLYSLNSSYGSEHLLKALLHK 98
++ L K+ + G ++W+ P H +P GY + + YG+ L+ +
Sbjct: 31 FKGLTEKLDYLKGLGIDAIWINP--HYASPNTDNGYDISDYREVMKEYGTMEDFDRLMAE 88
Query: 99 MKQHKVRAMADIVINH 114
+K+ +R M D+VINH
Sbjct: 89 LKKRGMRLMVDVVINH 104
>pdb|4GIN|A Chain A, Crystal Structure Of The Mutb R284c Mutant From Crystals
Soaked With The Inhibitor Deoxynojirimycin
Length = 584
Score = 35.4 bits (80), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 20/76 (26%), Positives = 37/76 (48%), Gaps = 5/76 (6%)
Query: 42 WRNLERKVPDISKSGFTSVWLPPATHSFAPE---GYLPQNLYSLNSSYGSEHLLKALLHK 98
++ L K+ + G ++W+ P H +P GY + + YG+ L+ +
Sbjct: 58 FKGLTEKLDYLKGLGIDAIWINP--HYASPNTDNGYDISDYREVMKEYGTMEDFDRLMAE 115
Query: 99 MKQHKVRAMADIVINH 114
+K+ +R M D+VINH
Sbjct: 116 LKKRGMRLMVDVVINH 131
>pdb|3DHP|A Chain A, Probing The Role Of Aromatic Residues At The Secondary
Saccharide Binding Sites Of Human Salivary Alpha-Amylase
In Substrate Hydrolysis And Bacterial Binding
Length = 496
Score = 34.3 bits (77), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 41/183 (22%), Positives = 75/183 (40%), Gaps = 28/183 (15%)
Query: 52 ISKSGFTSVWLPP-----ATHS-FAP--EGYLPQNLYSLNSSYGSEHLLKALLHKMKQHK 103
++ GF V + P A H+ F P E Y P + Y L + G+E + ++ +
Sbjct: 32 LAPKGFGGVQVSPPNENVAIHNPFRPWWERYQPVS-YKLCTRSGNEDEFRNMVTRCNNVG 90
Query: 104 VRAMADIVINHRV------GTTQGHGGKYN----RYDGIPLSWDEHAVTSCTGGLGNGST 153
VR D VINH GT+ G +N + +P S + C G G+
Sbjct: 91 VRIYVDAVINHMCGNAVSAGTSSTCGSYFNPGSRDFPAVPYSGADFNDGKCKTGSGDIEN 150
Query: 154 GDN--------FHGVPNIDHTQHFVRKDIIAWLRWLRNTVGFQDFRFDFARGYSAKYVKE 205
++ G+ ++ + +VR I ++ L + +G FR D ++ + +K
Sbjct: 151 YNDATQVRDCRLSGLLDLALGKDYVRSKIAEYMNHLID-IGVAGFRIDASKHMAPGDIKA 209
Query: 206 YIE 208
++
Sbjct: 210 ILD 212
>pdb|2ZIC|A Chain A, Crystal Structure Of Streptococcus Mutans Dextran
Glucosidase
Length = 543
Score = 33.5 bits (75), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 18/73 (24%), Positives = 35/73 (47%), Gaps = 1/73 (1%)
Query: 43 RNLERKVPDISKSGFTSVWLPPATHS-FAPEGYLPQNLYSLNSSYGSEHLLKALLHKMKQ 101
+ + K+ + K G ++WL P S GY N ++ +G+ + LL + K
Sbjct: 31 KGITSKLDYLQKLGVMAIWLSPVYDSPMDDNGYDIANYEAIADIFGNMADMDNLLTQAKM 90
Query: 102 HKVRAMADIVINH 114
++ + D+V+NH
Sbjct: 91 RGIKIIMDLVVNH 103
>pdb|2ZID|A Chain A, Crystal Structure Of Dextran Glucosidase E236q Complex
With Isomaltotriose
Length = 543
Score = 33.5 bits (75), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 18/73 (24%), Positives = 35/73 (47%), Gaps = 1/73 (1%)
Query: 43 RNLERKVPDISKSGFTSVWLPPATHS-FAPEGYLPQNLYSLNSSYGSEHLLKALLHKMKQ 101
+ + K+ + K G ++WL P S GY N ++ +G+ + LL + K
Sbjct: 31 KGITSKLDYLQKLGVMAIWLSPVYDSPMDDNGYDIANYEAIADIFGNMADMDNLLTQAKM 90
Query: 102 HKVRAMADIVINH 114
++ + D+V+NH
Sbjct: 91 RGIKIIMDLVVNH 103
>pdb|4DM2|A Chain A, Contribution Of Disulfide Bond Toward Thermostability In
Hyperthermostable Endocellulase
pdb|4DM2|B Chain B, Contribution Of Disulfide Bond Toward Thermostability In
Hyperthermostable Endocellulase
pdb|4DM2|C Chain C, Contribution Of Disulfide Bond Toward Thermostability In
Hyperthermostable Endocellulase
Length = 377
Score = 33.5 bits (75), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 27/94 (28%), Positives = 41/94 (43%), Gaps = 6/94 (6%)
Query: 32 FNWESCKHD----WWRNLERKVPDISKSGFTSVWLPPATHSFAPEGYLPQNL-YSLNSSY 86
F +E+C H W RN E + I GF ++ LP T S P G P + YS N
Sbjct: 36 FGFETCNHVVHGLWKRNWEDMLLQIKSLGFNAIRLPFCTESVKP-GTQPIGIDYSKNPDL 94
Query: 87 GSEHLLKALLHKMKQHKVRAMADIVINHRVGTTQ 120
L+ + +K+ + ++ HR+G T
Sbjct: 95 RGLDSLQIMEKIIKKAGDLGIFVLLDYHRIGCTH 128
>pdb|1VAH|A Chain A, Crystal Structure Of The Pig Pancreatic-Amylase Complexed
With R-Nitrophenyl-A-D-Maltoside
Length = 496
Score = 33.1 bits (74), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 38/143 (26%), Positives = 61/143 (42%), Gaps = 20/143 (13%)
Query: 72 EGYLPQNLYSLNSSYGSEHLLKALLHKMKQHKVRAMADIVINHRVGTTQGHG-----GKY 126
E Y P + Y L + G+E+ + ++ + VR D VINH G+ G G Y
Sbjct: 60 ERYQPVS-YKLCTRSGNENEFRDMVTRCNNVGVRIYVDAVINHMCGSGAAAGTGTTCGSY 118
Query: 127 ----NR-YDGIPLS-WDEHAVTSCTGGLGNGSTGDNFH-------GVPNIDHTQHFVRKD 173
NR + +P S WD + T G S D + G+ ++ + +VR
Sbjct: 119 CNPGNREFPAVPYSAWDFNDGKCKTASGGIESYNDPYQVRDCQLVGLLDLALEKDYVRSM 178
Query: 174 IIAWLRWLRNTVGFQDFRFDFAR 196
I +L L + +G FR D ++
Sbjct: 179 IADYLNKLID-IGVAGFRIDASK 200
>pdb|3L2L|A Chain A, X-Ray Crystallographic Analysis Of Pig Pancreatic
Alpha-Amylase With Limit Dextrin And Oligosaccharide
pdb|3L2M|A Chain A, X-Ray Crystallographic Analysis Of Pig Pancreatic
Alpha-Amylase With Alpha-Cyclodextrin
Length = 496
Score = 33.1 bits (74), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 38/143 (26%), Positives = 61/143 (42%), Gaps = 20/143 (13%)
Query: 72 EGYLPQNLYSLNSSYGSEHLLKALLHKMKQHKVRAMADIVINHRVGTTQGHG-----GKY 126
E Y P + Y L + G+E+ + ++ + VR D VINH G+ G G Y
Sbjct: 60 ERYQPVS-YKLCTRSGNENEFRDMVTRCNNVGVRIYVDAVINHMCGSGAAAGTGTTCGSY 118
Query: 127 ----NR-YDGIPLS-WDEHAVTSCTGGLGNGSTGDNFH-------GVPNIDHTQHFVRKD 173
NR + +P S WD + T G S D + G+ ++ + +VR
Sbjct: 119 CNPGNREFPAVPYSAWDFNDGKCKTASGGIESYNDPYQVRDCQLVGLLDLALEKDYVRSM 178
Query: 174 IIAWLRWLRNTVGFQDFRFDFAR 196
I +L L + +G FR D ++
Sbjct: 179 IADYLNKLID-IGVAGFRIDASK 200
>pdb|1UA3|A Chain A, Crystal Structure Of The Pig Pancreatic A-Amylase
Complexed With Malto-Oligosaccharides
Length = 496
Score = 33.1 bits (74), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 38/143 (26%), Positives = 61/143 (42%), Gaps = 20/143 (13%)
Query: 72 EGYLPQNLYSLNSSYGSEHLLKALLHKMKQHKVRAMADIVINHRVGTTQGHG-----GKY 126
E Y P + Y L + G+E+ + ++ + VR D VINH G+ G G Y
Sbjct: 60 ERYQPVS-YKLCTRSGNENEFRDMVTRCNNVGVRIYVDAVINHMCGSGAAAGTGTTCGSY 118
Query: 127 ----NR-YDGIPLS-WDEHAVTSCTGGLGNGSTGDNFH-------GVPNIDHTQHFVRKD 173
NR + +P S WD + T G S D + G+ ++ + +VR
Sbjct: 119 CNPGNREFPAVPYSAWDFNDGKCKTASGGIESYNDPYQVRDCQLVGLLDLALEKDYVRSM 178
Query: 174 IIAWLRWLRNTVGFQDFRFDFAR 196
I +L L + +G FR D ++
Sbjct: 179 IADYLNKLID-IGVAGFRIDASK 200
>pdb|1HX0|A Chain A, Structure Of Pig Pancreatic Alpha-Amylase Complexed With
The "truncate" Acarbose Molecule (Pseudotrisaccharide)
pdb|1WO2|A Chain A, Crystal Structure Of The Pig Pancreatic Alpha-Amylase
Complexed With Malto-Oligosaacharides Under The Effect
Of The Chloride Ion
Length = 496
Score = 33.1 bits (74), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 38/143 (26%), Positives = 61/143 (42%), Gaps = 20/143 (13%)
Query: 72 EGYLPQNLYSLNSSYGSEHLLKALLHKMKQHKVRAMADIVINHRVGTTQGHG-----GKY 126
E Y P + Y L + G+E+ + ++ + VR D VINH G+ G G Y
Sbjct: 60 ERYQPVS-YKLCTRSGNENEFRDMVTRCNNVGVRIYVDAVINHMCGSGAAAGTGTTCGSY 118
Query: 127 ----NR-YDGIPLS-WDEHAVTSCTGGLGNGSTGDNFH-------GVPNIDHTQHFVRKD 173
NR + +P S WD + T G S D + G+ ++ + +VR
Sbjct: 119 CNPGNREFPAVPYSAWDFNDGKCKTASGGIESYNDPYQVRDCQLVGLLDLALEKDYVRSM 178
Query: 174 IIAWLRWLRNTVGFQDFRFDFAR 196
I +L L + +G FR D ++
Sbjct: 179 IADYLNKLID-IGVAGFRIDASK 200
>pdb|1BVN|P Chain P, Pig Pancreatic Alpha-Amylase In Complex With The
Proteinaceous Inhibitor Tendamistat
Length = 496
Score = 33.1 bits (74), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 36/143 (25%), Positives = 59/143 (41%), Gaps = 20/143 (13%)
Query: 72 EGYLPQNLYSLNSSYGSEHLLKALLHKMKQHKVRAMADIVINHRVGTTQGHG-----GKY 126
E Y P + Y L + G+E+ + ++ + VR D VINH G+ G G Y
Sbjct: 60 ERYQPVS-YKLCTRSGNENEFRDMVTRCNNVGVRIYVDAVINHMCGSGAAAGTGTTCGSY 118
Query: 127 -----NRYDGIPLS-WDEHAVTSCTGGLGNGSTGDNFH-------GVPNIDHTQHFVRKD 173
+ +P S WD + T G S D + G+ ++ + +VR
Sbjct: 119 CNPGSREFPAVPYSAWDFNDGKCKTASGGIESYNDPYQVRDCQLVGLLDLALEKDYVRSM 178
Query: 174 IIAWLRWLRNTVGFQDFRFDFAR 196
I +L L + +G FR D ++
Sbjct: 179 IADYLNKLID-IGVAGFRLDASK 200
>pdb|1OSE|A Chain A, Porcine Pancreatic Alpha-Amylase Complexed With Acarbose
Length = 496
Score = 33.1 bits (74), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 36/143 (25%), Positives = 59/143 (41%), Gaps = 20/143 (13%)
Query: 72 EGYLPQNLYSLNSSYGSEHLLKALLHKMKQHKVRAMADIVINHRVGTTQGHG-----GKY 126
E Y P + Y L + G+E+ + ++ + VR D VINH G+ G G Y
Sbjct: 60 ERYQPVS-YKLCTRSGNENEFRDMVTRCNNVGVRIYVDAVINHMCGSGAAAGTGTTCGSY 118
Query: 127 -----NRYDGIPLS-WDEHAVTSCTGGLGNGSTGDNFH-------GVPNIDHTQHFVRKD 173
+ +P S WD + T G S D + G+ ++ + +VR
Sbjct: 119 CNPGSREFPAVPYSAWDFNDGKCKTASGGIESYNDPYQVRDCQLVGLLDLALEKDYVRSM 178
Query: 174 IIAWLRWLRNTVGFQDFRFDFAR 196
I +L L + +G FR D ++
Sbjct: 179 IADYLNKLID-IGVAGFRIDASK 200
>pdb|1PIF|A Chain A, Pig Alpha-amylase
pdb|1PIG|A Chain A, Pig Pancreatic Alpha-Amylase Complexed With The
Oligosaccharide V-1532
Length = 496
Score = 33.1 bits (74), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 36/143 (25%), Positives = 59/143 (41%), Gaps = 20/143 (13%)
Query: 72 EGYLPQNLYSLNSSYGSEHLLKALLHKMKQHKVRAMADIVINHRVGTTQGHG-----GKY 126
E Y P + Y L + G+E+ + ++ + VR D VINH G+ G G Y
Sbjct: 60 ERYQPVS-YKLCTRSGNENEFRDMVTRCNNVGVRIYVDAVINHMCGSGAAAGTGTTCGSY 118
Query: 127 -----NRYDGIPLS-WDEHAVTSCTGGLGNGSTGDNFH-------GVPNIDHTQHFVRKD 173
+ +P S WD + T G S D + G+ ++ + +VR
Sbjct: 119 CNPGSREFPAVPYSAWDFNDGKCKTASGGIESYNDPYQVRDCQLVGLLDLALEKDYVRSM 178
Query: 174 IIAWLRWLRNTVGFQDFRFDFAR 196
I +L L + +G FR D ++
Sbjct: 179 IADYLNKLID-IGVAGFRIDASK 200
>pdb|1JFH|A Chain A, Structure Of A Pancreatic Alpha-Amylase Bound To A
Substrate Analogue At 2.03 Angstrom Resolution
Length = 496
Score = 33.1 bits (74), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 36/143 (25%), Positives = 59/143 (41%), Gaps = 20/143 (13%)
Query: 72 EGYLPQNLYSLNSSYGSEHLLKALLHKMKQHKVRAMADIVINHRVGTTQGHG-----GKY 126
E Y P + Y L + G+E+ + ++ + VR D VINH G+ G G Y
Sbjct: 60 ERYQPVS-YKLCTRSGNENEFRDMVTRCNNVGVRIYVDAVINHMCGSGAAAGTGTTCGSY 118
Query: 127 -----NRYDGIPLS-WDEHAVTSCTGGLGNGSTGDNFH-------GVPNIDHTQHFVRKD 173
+ +P S WD + T G S D + G+ ++ + +VR
Sbjct: 119 CNPGSREFPAVPYSAWDFNDGKCKTASGGIESYNDPYQVRDCQLVGLLDLALEKDYVRSM 178
Query: 174 IIAWLRWLRNTVGFQDFRFDFAR 196
I +L L + +G FR D ++
Sbjct: 179 IADYLNKLID-IGVAGFRIDASK 200
>pdb|1PPI|A Chain A, The Active Center Of A Mammalian Alpha-Amylase. The
Structure Of The Complex Of A Pancreatic Alpha-Amylase
With A Carbohydrate Inhibitor Refined To 2.2 Angstroms
Resolution
Length = 496
Score = 33.1 bits (74), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 36/143 (25%), Positives = 59/143 (41%), Gaps = 20/143 (13%)
Query: 72 EGYLPQNLYSLNSSYGSEHLLKALLHKMKQHKVRAMADIVINHRVGTTQGHG-----GKY 126
E Y P + Y L + G+E+ + ++ + VR D VINH G+ G G Y
Sbjct: 60 ERYQPVS-YKLCTRSGNENEFRDMVTRCNNVGVRIYVDAVINHMCGSGAAAGTGTTCGSY 118
Query: 127 -----NRYDGIPLS-WDEHAVTSCTGGLGNGSTGDNFH-------GVPNIDHTQHFVRKD 173
+ +P S WD + T G S D + G+ ++ + +VR
Sbjct: 119 CNPGSREFPAVPYSAWDFNDGKCKTASGGIESYNDPYQVRDCQLVGLLDLALEKDYVRSM 178
Query: 174 IIAWLRWLRNTVGFQDFRFDFAR 196
I +L L + +G FR D ++
Sbjct: 179 IADYLNKLID-IGVAGFRIDASK 200
>pdb|1DHK|A Chain A, Structure Of Porcine Pancreatic Alpha-Amylase
Length = 496
Score = 33.1 bits (74), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 36/143 (25%), Positives = 59/143 (41%), Gaps = 20/143 (13%)
Query: 72 EGYLPQNLYSLNSSYGSEHLLKALLHKMKQHKVRAMADIVINHRVGTTQGHG-----GKY 126
E Y P + Y L + G+E+ + ++ + VR D VINH G+ G G Y
Sbjct: 60 ERYQPVS-YKLCTRSGNENEFRDMVTRCNNVGVRIYVDAVINHMCGSGAAAGTGTTCGSY 118
Query: 127 -----NRYDGIPLS-WDEHAVTSCTGGLGNGSTGDNFH-------GVPNIDHTQHFVRKD 173
+ +P S WD + T G S D + G+ ++ + +VR
Sbjct: 119 CNPGSREFPAVPYSAWDFNDGKCKTASGGIESYNDPYQVRDCQLVGLLDLALEKDYVRSM 178
Query: 174 IIAWLRWLRNTVGFQDFRFDFAR 196
I +L L + +G FR D ++
Sbjct: 179 IADYLNKLID-IGVAGFRIDASK 200
>pdb|3EDE|A Chain A, Structural Base For Cyclodextrin Hydrolysis
pdb|3EDE|B Chain B, Structural Base For Cyclodextrin Hydrolysis
Length = 601
Score = 33.1 bits (74), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 42/195 (21%), Positives = 74/195 (37%), Gaps = 31/195 (15%)
Query: 52 ISKSGFTSVWLPPATH----SFAPEGYLPQNLYSLNSSYGSEHLLKALLHKMKQHKVRAM 107
I+ GFT +W P +++ GY + Y ++ YGS L + ++ + +
Sbjct: 157 IAGLGFTQLWPTPLVENDAAAYSYHGYAATDHYRIDPRYGSNEDFVRLSTEARKRGMGLI 216
Query: 108 ADIVINHRVGTTQ------------GHGGKYNRYDGIPLSWDEHAVT---SCTGGLGNGS 152
D+V++H +G +GGK+ +P AV + N +
Sbjct: 217 QDVVLSH-IGKHHWWMKDLPTPDWINYGGKF-----VPTQHHRVAVQDPYAAQADSENFT 270
Query: 153 TGDNFHGVPNIDHTQHFVRKDIIAWLRWLRNTVGFQDFRFDFARGYS-----AKYVKEYI 207
G G+P+++ T V +I W G R D GYS +Y + +
Sbjct: 271 KGWFVEGMPDLNQTNPLVANYLIQNNIWWIEYAGLSGLRID-TYGYSDGAFLTEYTRRLM 329
Query: 208 EGARPIFSVGEYWDS 222
+ VGE W +
Sbjct: 330 AEYPRLNMVGEEWST 344
>pdb|1KXQ|A Chain A, Camelid Vhh Domain In Complex With Porcine Pancreatic
Alpha- Amylase
pdb|1KXQ|B Chain B, Camelid Vhh Domain In Complex With Porcine Pancreatic
Alpha- Amylase
pdb|1KXQ|C Chain C, Camelid Vhh Domain In Complex With Porcine Pancreatic
Alpha- Amylase
pdb|1KXQ|D Chain D, Camelid Vhh Domain In Complex With Porcine Pancreatic
Alpha- Amylase
pdb|1KXT|A Chain A, Camelid Vhh Domains In Complex With Porcine Pancreatic
Alpha-Amylase
pdb|1KXT|C Chain C, Camelid Vhh Domains In Complex With Porcine Pancreatic
Alpha-Amylase
pdb|1KXT|E Chain E, Camelid Vhh Domains In Complex With Porcine Pancreatic
Alpha-Amylase
pdb|1KXV|A Chain A, Camelid Vhh Domains In Complex With Porcine Pancreatic
Alpha-Amylase
pdb|1KXV|B Chain B, Camelid Vhh Domains In Complex With Porcine Pancreatic
Alpha-Amylase
Length = 496
Score = 33.1 bits (74), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 36/143 (25%), Positives = 59/143 (41%), Gaps = 20/143 (13%)
Query: 72 EGYLPQNLYSLNSSYGSEHLLKALLHKMKQHKVRAMADIVINHRVGTTQGHG-----GKY 126
E Y P + Y L + G+E+ + ++ + VR D VINH G+ G G Y
Sbjct: 60 ERYQPVS-YKLCTRSGNENEFRDMVTRCNNVGVRIYVDAVINHMCGSGAAAGTGTTCGSY 118
Query: 127 -----NRYDGIPLS-WDEHAVTSCTGGLGNGSTGDNFH-------GVPNIDHTQHFVRKD 173
+ +P S WD + T G S D + G+ ++ + +VR
Sbjct: 119 CNPGSREFPAVPYSAWDFNDGKCKTASGGIESYNDPYQVRDCQLVGLLDLALEKDYVRSM 178
Query: 174 IIAWLRWLRNTVGFQDFRFDFAR 196
I +L L + +G FR D ++
Sbjct: 179 IADYLNKLID-IGVAGFRIDASK 200
>pdb|2ZE0|A Chain A, Alpha-glucosidase Gsj
Length = 555
Score = 32.7 bits (73), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 19/73 (26%), Positives = 35/73 (47%), Gaps = 1/73 (1%)
Query: 43 RNLERKVPDISKSGFTSVWLPPATHS-FAPEGYLPQNLYSLNSSYGSEHLLKALLHKMKQ 101
R + K+ + + G VW+ P S A GY + Y++ +G+ LL + +
Sbjct: 31 RGIIEKLDYLVELGVDIVWICPIYRSPNADNGYDISDYYAIMDEFGTMDDFDELLAQAHR 90
Query: 102 HKVRAMADIVINH 114
++ + D+VINH
Sbjct: 91 RGLKVILDLVINH 103
>pdb|1QHO|A Chain A, Five-Domain Alpha-Amylase From Bacillus
Stearothermophilus, MaltoseACARBOSE COMPLEX
pdb|1QHP|A Chain A, Five-Domain Alpha-Amylase From Bacillus
Stearothermophilus, Maltose Complex
Length = 686
Score = 32.3 bits (72), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 21/89 (23%), Positives = 40/89 (44%), Gaps = 12/89 (13%)
Query: 38 KHDWWRNLE---RKVPDISKSGFTSVWLPPA---------THSFAPEGYLPQNLYSLNSS 85
K W +LE +K+P + + G T++WL P T + GY ++ +
Sbjct: 44 KMYWGGDLEGVRQKLPYLKQLGVTTIWLSPVLDNLDTLAGTDNTGYHGYWTRDFKQIEEH 103
Query: 86 YGSEHLLKALLHKMKQHKVRAMADIVINH 114
+G+ L++ Q+ ++ + D V NH
Sbjct: 104 FGNWTTFDTLVNDAHQNGIKVIVDFVPNH 132
>pdb|3M07|A Chain A, 1.4 Angstrom Resolution Crystal Structure Of Putative
Alpha Amylase From Salmonella Typhimurium
Length = 618
Score = 32.0 bits (71), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 38/76 (50%), Gaps = 4/76 (5%)
Query: 42 WRNLERKVPDISKSGFTSVWLPPATHSFAPE---GYLPQNLYSLNSSYGSEHLLKALLHK 98
+R K+P +++ G T + + P F E GY LY+ +S+YG+ KA +
Sbjct: 153 FRAAIAKLPYLAELGVTVIEVMPVAQ-FGGERGWGYDGVLLYAPHSAYGTPDDFKAFIDA 211
Query: 99 MKQHKVRAMADIVINH 114
+ + + DIV+NH
Sbjct: 212 AHGYGLSVVLDIVLNH 227
>pdb|4AEZ|A Chain A, Crystal Structure Of Mitotic Checkpoint Complex
pdb|4AEZ|D Chain D, Crystal Structure Of Mitotic Checkpoint Complex
pdb|4AEZ|G Chain G, Crystal Structure Of Mitotic Checkpoint Complex
Length = 401
Score = 32.0 bits (71), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 51/220 (23%), Positives = 79/220 (35%), Gaps = 40/220 (18%)
Query: 99 MKQHKVRAMADIVINHRVGTTQGHGGKYNRYDGIPLSWDEHAVTSCTGGLGN-GSTGDNF 157
+ H VR + NH++GT QGH + L+W + +GG N D
Sbjct: 198 IHHHDVR-----IANHQIGTLQGHSSEV-----CGLAWRSDGLQLASGGNDNVVQIWDAR 247
Query: 158 HGVPNIDHTQHFVRKDIIAWLRWLRNTV----GFQDFRFDFARGYSAKYVKEYIEG---- 209
+P T H +AW W N + G D + F + V G
Sbjct: 248 SSIPKFTKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATGARVNTVDAGSQVT 307
Query: 210 -------ARPIFSVGEYWDSC----NYNSHGLDYNQD--SHRQRIINWIDGTGQLSAAFD 256
++ I S + D+ +Y+S GL D +H R++ LS
Sbjct: 308 SLIWSPHSKEIMSTHGFPDNNLSIWSYSSSGLTKQVDIPAHDTRVL-----YSALSPDGR 362
Query: 257 FTTKGILQEAVKGQFWRLRDA-QGKPPGVMGWWPSRAVTF 295
+ E +K FWR+ D K P + PS ++T
Sbjct: 363 ILSTAASDENLK--FWRVYDGDHVKRPIPITKTPSSSITI 400
>pdb|1Z32|X Chain X, Structure-Function Relationships In Human Salivary Alpha-
Amylase: Role Of Aromatic Residues
Length = 496
Score = 32.0 bits (71), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 40/171 (23%), Positives = 70/171 (40%), Gaps = 28/171 (16%)
Query: 52 ISKSGFTSVWLPP-----ATHS-FAP--EGYLPQNLYSLNSSYGSEHLLKALLHKMKQHK 103
++ GF V + P A H+ F P E Y P + Y L + G+E + ++ +
Sbjct: 32 LAPKGFGGVQVSPPNENVAIHNPFRPWWERYQPVS-YKLCTRSGNEDEFRNMVTRCNNVG 90
Query: 104 VRAMADIVINHRV------GTTQGHGGKYN----RYDGIPLSWDEHAVTSCTGGLGNGST 153
VR D VINH GT+ G +N + +P S + C G G+
Sbjct: 91 VRIYVDAVINHMCGNAVSAGTSSTCGSYFNPGSRDFPAVPYSGWDFNDGKCKTGSGDIEN 150
Query: 154 GDN--------FHGVPNIDHTQHFVRKDIIAWLRWLRNTVGFQDFRFDFAR 196
++ G+ ++ + +VR I ++ L + +G FR D ++
Sbjct: 151 MNDATQVRDCRLSGLLDLALGKDYVRSKIAEYMNHLID-IGVAGFRIDASK 200
>pdb|3EDF|A Chain A, Structural Base For Cyclodextrin Hydrolysis
pdb|3EDF|B Chain B, Structural Base For Cyclodextrin Hydrolysis
pdb|3EDJ|A Chain A, Structural Base For Cyclodextrin Hydrolysis
pdb|3EDJ|B Chain B, Structural Base For Cyclodextrin Hydrolysis
pdb|3EDK|A Chain A, Structural Base For Cyclodextrin Hydrolysis
pdb|3EDK|B Chain B, Structural Base For Cyclodextrin Hydrolysis
Length = 601
Score = 31.6 bits (70), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 39/175 (22%), Positives = 68/175 (38%), Gaps = 27/175 (15%)
Query: 52 ISKSGFTSVWLPPATH----SFAPEGYLPQNLYSLNSSYGSEHLLKALLHKMKQHKVRAM 107
I+ GFT +W P +++ GY + Y ++ YGS L + ++ + +
Sbjct: 157 IAGLGFTQLWPTPLVENDAAAYSYHGYAATDHYRIDPRYGSNEDFVRLSTEARKRGMGLI 216
Query: 108 ADIVINHRVGTTQ------------GHGGKYNRYDGIPLSWDEHAVT---SCTGGLGNGS 152
D+V++H +G +GGK+ +P AV + N +
Sbjct: 217 QDVVLSH-IGKHHWWMKDLPTPDWINYGGKF-----VPTQHHRVAVQDPYAAQADSENFT 270
Query: 153 TGDNFHGVPNIDHTQHFVRKDIIAWLRWLRNTVGFQDFRFDFARGYS-AKYVKEY 206
G G+P+++ T V +I W G R D GYS ++ EY
Sbjct: 271 KGWFVEGMPDLNQTNPLVANYLIQNNIWWIEYAGLSGLRID-TYGYSDGAFLTEY 324
>pdb|3EDD|A Chain A, Structural Base For Cyclodextrin Hydrolysis
pdb|3EDD|B Chain B, Structural Base For Cyclodextrin Hydrolysis
Length = 601
Score = 31.6 bits (70), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 41/195 (21%), Positives = 74/195 (37%), Gaps = 31/195 (15%)
Query: 52 ISKSGFTSVWLPPATH----SFAPEGYLPQNLYSLNSSYGSEHLLKALLHKMKQHKVRAM 107
I+ GFT +W P +++ GY + Y ++ YGS L + ++ + +
Sbjct: 157 IAGLGFTQLWPTPLVENDAAAYSYHGYAATDHYRIDPRYGSNEDFVRLSTEARKRGMGLI 216
Query: 108 ADIVINHRVGTTQ------------GHGGKYNRYDGIPLSWDEHAVT---SCTGGLGNGS 152
D+V++H +G +GGK+ +P AV + N +
Sbjct: 217 QDVVLSH-IGKHHWWMKDLPTPDWINYGGKF-----VPTQHHRVAVQDPYAAQADSENFT 270
Query: 153 TGDNFHGVPNIDHTQHFVRKDIIAWLRWLRNTVGFQDFRFDFARGYS-----AKYVKEYI 207
G G+P+++ T V +I W G R D GYS +Y + +
Sbjct: 271 KGWFVEGMPDLNQTNPLVANYLIQNNIWWIEYAGLSGLRID-TYGYSDGAFLTEYTRRLM 329
Query: 208 EGARPIFSVGEYWDS 222
+ VG+ W +
Sbjct: 330 AEYPRLNMVGQEWST 344
>pdb|1JXJ|A Chain A, Role Of Mobile Loop In The Mechanism Of Human Salivary
Amylase
Length = 496
Score = 31.6 bits (70), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 40/171 (23%), Positives = 70/171 (40%), Gaps = 28/171 (16%)
Query: 52 ISKSGFTSVWLPP-----ATHS-FAP--EGYLPQNLYSLNSSYGSEHLLKALLHKMKQHK 103
++ GF V + P A H+ F P E Y P + Y L + G+E + ++ +
Sbjct: 32 LAPKGFGGVQVSPPNENVAIHNPFRPLWERYQPVS-YKLCTRSGNEDEFRNMVTRCNNVG 90
Query: 104 VRAMADIVINHRV------GTTQGHGGKYN----RYDGIPLSWDEHAVTSCTGGLGNGST 153
VR D VINH GT+ G +N + +P S + C G G+
Sbjct: 91 VRIYVDAVINHMCGNAVSAGTSSTCGSYFNPGSRDFPAVPYSGWDFNDGKCKTGSGDIEN 150
Query: 154 GDN--------FHGVPNIDHTQHFVRKDIIAWLRWLRNTVGFQDFRFDFAR 196
++ G+ ++ + +VR I ++ L + +G FR D ++
Sbjct: 151 YNDATQVRDCRLSGLLDLALGKDYVRSKIAEYMNHLID-IGVAGFRIDASK 200
>pdb|1UA7|A Chain A, Crystal Structure Analysis Of Alpha-Amylase From Bacillus
Subtilis Complexed With Acarbose
Length = 422
Score = 31.6 bits (70), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 26/111 (23%), Positives = 43/111 (38%), Gaps = 21/111 (18%)
Query: 39 HDW---WRNLERKVPDISKSGFTSVWLPPATHSFAPEG-------------YLPQNLYSL 82
H W + L+ + DI +G+T++ P EG Y P +
Sbjct: 10 HAWNWSFNTLKHNMKDIHDAGYTAIQTSPINQ--VKEGNQGDKSMSNWYWLYQPTSYQIG 67
Query: 83 NSSYGSEHLLKALLHKMKQHKVRAMADIVINHRVGTTQGHGGKYNRYDGIP 133
N G+E K + +++ ++ + D VINH TT + N IP
Sbjct: 68 NRYLGTEQEFKEMCAAAEEYGIKVIVDAVINH---TTFDYAAISNEVKSIP 115
>pdb|1NM9|A Chain A, Crystal Structure Of Recombinant Human Salivary Amylase
Mutant W58a
Length = 496
Score = 31.6 bits (70), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 40/171 (23%), Positives = 70/171 (40%), Gaps = 28/171 (16%)
Query: 52 ISKSGFTSVWLPP-----ATHS-FAP--EGYLPQNLYSLNSSYGSEHLLKALLHKMKQHK 103
++ GF V + P A H+ F P E Y P + Y L + G+E + ++ +
Sbjct: 32 LAPKGFGGVQVSPPNENVAIHNPFRPAWERYQPVS-YKLCTRSGNEDEFRNMVTRCNNVG 90
Query: 104 VRAMADIVINHRV------GTTQGHGGKYN----RYDGIPLSWDEHAVTSCTGGLGNGST 153
VR D VINH GT+ G +N + +P S + C G G+
Sbjct: 91 VRIYVDAVINHMCGNAVSAGTSSTCGSYFNPGSRDFPAVPYSGWDFNDGKCKTGSGDIEN 150
Query: 154 GDN--------FHGVPNIDHTQHFVRKDIIAWLRWLRNTVGFQDFRFDFAR 196
++ G+ ++ + +VR I ++ L + +G FR D ++
Sbjct: 151 YNDATQVRDCRLSGLLDLALGKDYVRSKIAEYMNHLID-IGVAGFRIDASK 200
>pdb|3BLK|A Chain A, Role Of Aromatic Residues In Starch Binding
Length = 496
Score = 31.6 bits (70), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 40/171 (23%), Positives = 70/171 (40%), Gaps = 28/171 (16%)
Query: 52 ISKSGFTSVWLPP-----ATHS-FAP--EGYLPQNLYSLNSSYGSEHLLKALLHKMKQHK 103
++ GF V + P A H+ F P E Y P + Y L + G+E + ++ +
Sbjct: 32 LAPKGFGGVQVSPPNENVAIHNPFRPWWERYQPVS-YKLCTRSGNEDEFRNMVTRCNNVG 90
Query: 104 VRAMADIVINHRV------GTTQGHGGKYN----RYDGIPLSWDEHAVTSCTGGLGNGST 153
VR D VINH GT+ G +N + +P S + C G G+
Sbjct: 91 VRIYVDAVINHMCGNAVSAGTSSTCGSYFNPGSRDFPAVPYSGWDFNDGKCKTGSGDIEN 150
Query: 154 GDN--------FHGVPNIDHTQHFVRKDIIAWLRWLRNTVGFQDFRFDFAR 196
++ G+ ++ + +VR I ++ L + +G FR D ++
Sbjct: 151 YNDATQVRDCRLSGLLDLALGKDYVRSKIAEYMNHLID-IGVAGFRIDASK 200
>pdb|3BLP|X Chain X, Role Of Aromatic Residues In Human Salivary Alpha-Amylase
Length = 496
Score = 31.6 bits (70), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 40/171 (23%), Positives = 70/171 (40%), Gaps = 28/171 (16%)
Query: 52 ISKSGFTSVWLPP-----ATHS-FAP--EGYLPQNLYSLNSSYGSEHLLKALLHKMKQHK 103
++ GF V + P A H+ F P E Y P + Y L + G+E + ++ +
Sbjct: 32 LAPKGFGGVQVSPPNENVAIHNPFRPWWERYQPVS-YKLCTRSGNEDEFRNMVTRCNNVG 90
Query: 104 VRAMADIVINHRV------GTTQGHGGKYN----RYDGIPLSWDEHAVTSCTGGLGNGST 153
VR D VINH GT+ G +N + +P S + C G G+
Sbjct: 91 VRIYVDAVINHMCGNAVSAGTSSTCGSYFNPGSRDFPAVPYSGWDFNDGKCKTGSGDIEN 150
Query: 154 GDN--------FHGVPNIDHTQHFVRKDIIAWLRWLRNTVGFQDFRFDFAR 196
++ G+ ++ + +VR I ++ L + +G FR D ++
Sbjct: 151 YNDATQVRDCRLSGLLDLALGKDYVRSKIAEYMNHLID-IGVAGFRIDASK 200
>pdb|1C8Q|A Chain A, Structure Solution And Refinement Of The Recombinant Human
Salivary Amylase
pdb|1MFV|A Chain A, Probing The Role Of A Mobile Loop In Human Slaivary
Amylase: Structural Studies On The Loop-Deleted Enzyme
pdb|1XV8|A Chain A, Crystal Structure Of Human Salivary Alpha-Amylase Dimer
pdb|1XV8|B Chain B, Crystal Structure Of Human Salivary Alpha-Amylase Dimer
pdb|1SMD|A Chain A, Human Salivary Amylase
Length = 496
Score = 31.6 bits (70), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 40/171 (23%), Positives = 70/171 (40%), Gaps = 28/171 (16%)
Query: 52 ISKSGFTSVWLPP-----ATHS-FAP--EGYLPQNLYSLNSSYGSEHLLKALLHKMKQHK 103
++ GF V + P A H+ F P E Y P + Y L + G+E + ++ +
Sbjct: 32 LAPKGFGGVQVSPPNENVAIHNPFRPWWERYQPVS-YKLCTRSGNEDEFRNMVTRCNNVG 90
Query: 104 VRAMADIVINHRV------GTTQGHGGKYN----RYDGIPLSWDEHAVTSCTGGLGNGST 153
VR D VINH GT+ G +N + +P S + C G G+
Sbjct: 91 VRIYVDAVINHMCGNAVSAGTSSTCGSYFNPGSRDFPAVPYSGWDFNDGKCKTGSGDIEN 150
Query: 154 GDN--------FHGVPNIDHTQHFVRKDIIAWLRWLRNTVGFQDFRFDFAR 196
++ G+ ++ + +VR I ++ L + +G FR D ++
Sbjct: 151 YNDATQVRDCRLSGLLDLALGKDYVRSKIAEYMNHLID-IGVAGFRIDASK 200
>pdb|1BAG|A Chain A, Alpha-Amylase From Bacillus Subtilis Complexed With
Maltopentaose
Length = 425
Score = 31.6 bits (70), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 26/111 (23%), Positives = 43/111 (38%), Gaps = 21/111 (18%)
Query: 39 HDW---WRNLERKVPDISKSGFTSVWLPPATHSFAPEG-------------YLPQNLYSL 82
H W + L+ + DI +G+T++ P EG Y P +
Sbjct: 13 HAWNWSFNTLKHNMKDIHDAGYTAIQTSPINQ--VKEGNQGDKSMSNWYWLYQPTSYQIG 70
Query: 83 NSSYGSEHLLKALLHKMKQHKVRAMADIVINHRVGTTQGHGGKYNRYDGIP 133
N G+E K + +++ ++ + D VINH TT + N IP
Sbjct: 71 NRYLGTEQEFKEMCAAAEEYGIKVIVDAVINH---TTFDYAAISNEVKSIP 118
>pdb|1Q4N|X Chain X, Structural Studies Of Phe256trp Of Human Salivary Alpha-
Amylase: Implications For The Role Of A Conserved Water
Molecule And Its Associated Chain In Enzyme Activity
Length = 496
Score = 31.6 bits (70), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 40/171 (23%), Positives = 70/171 (40%), Gaps = 28/171 (16%)
Query: 52 ISKSGFTSVWLPP-----ATHS-FAP--EGYLPQNLYSLNSSYGSEHLLKALLHKMKQHK 103
++ GF V + P A H+ F P E Y P + Y L + G+E + ++ +
Sbjct: 32 LAPKGFGGVQVSPPNENVAIHNPFRPWWERYQPVS-YKLCTRSGNEDEFRNMVTRCNNVG 90
Query: 104 VRAMADIVINHRV------GTTQGHGGKYN----RYDGIPLSWDEHAVTSCTGGLGNGST 153
VR D VINH GT+ G +N + +P S + C G G+
Sbjct: 91 VRIYVDAVINHMCGNAVSAGTSSTCGSYFNPGSRDFPAVPYSGWDFNDGKCKTGSGDIEN 150
Query: 154 GDN--------FHGVPNIDHTQHFVRKDIIAWLRWLRNTVGFQDFRFDFAR 196
++ G+ ++ + +VR I ++ L + +G FR D ++
Sbjct: 151 YNDATQVRDCRLSGLLDLALGKDYVRSKIAEYMNHLID-IGVAGFRIDASK 200
>pdb|3DC0|A Chain A, Crystal Structure Of Native Alpha-Amylase From Bacillus
Sp. Kr-8104
Length = 422
Score = 31.6 bits (70), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 23/92 (25%), Positives = 37/92 (40%), Gaps = 18/92 (19%)
Query: 39 HDW---WRNLERKVPDISKSGFTSVWLPPATHSFAPEG-------------YLPQNLYSL 82
H W + L+ + DI +G+T++ P EG Y P +
Sbjct: 10 HAWNWSFNTLKNNMKDIHDAGYTAIQTSPINQ--VKEGNKGDKSMGNWYWLYQPTSYQIG 67
Query: 83 NSSYGSEHLLKALLHKMKQHKVRAMADIVINH 114
N GSE K + +++ V+ + D VINH
Sbjct: 68 NRYLGSEEEFKEMCAAAEEYGVKVIVDAVINH 99
>pdb|1JXK|A Chain A, Role Of Ethe Mobile Loop In The Mehanism Of Human Salivary
Amylase
pdb|1MFU|A Chain A, Probing The Role Of A Mobile Loop In Human Salivary
Amylase: Structural Studies On The Loop-Deleted Mutant
Length = 491
Score = 31.6 bits (70), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 40/171 (23%), Positives = 70/171 (40%), Gaps = 28/171 (16%)
Query: 52 ISKSGFTSVWLPP-----ATHS-FAP--EGYLPQNLYSLNSSYGSEHLLKALLHKMKQHK 103
++ GF V + P A H+ F P E Y P + Y L + G+E + ++ +
Sbjct: 32 LAPKGFGGVQVSPPNENVAIHNPFRPWWERYQPVS-YKLCTRSGNEDEFRNMVTRCNNVG 90
Query: 104 VRAMADIVINHRV------GTTQGHGGKYN----RYDGIPLSWDEHAVTSCTGGLGNGST 153
VR D VINH GT+ G +N + +P S + C G G+
Sbjct: 91 VRIYVDAVINHMCGNAVSAGTSSTCGSYFNPGSRDFPAVPYSGWDFNDGKCKTGSGDIEN 150
Query: 154 GDN--------FHGVPNIDHTQHFVRKDIIAWLRWLRNTVGFQDFRFDFAR 196
++ G+ ++ + +VR I ++ L + +G FR D ++
Sbjct: 151 YNDATQVRDCRLSGLLDLALGKDYVRSKIAEYMNHLID-IGVAGFRIDASK 200
>pdb|3FAW|A Chain A, Crystal Structure Of The Group B Streptococcus Pullulanase
Sap
pdb|3FAX|A Chain A, The Crystal Structure Of Gbs Pullulanase Sap In Complex
With Maltotetraose
Length = 877
Score = 31.2 bits (69), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 35/160 (21%), Positives = 65/160 (40%), Gaps = 28/160 (17%)
Query: 73 GYLPQNLYSLNSSYGSE--------HLLKALLHKMKQHKVRAMADIVINHRVGTTQGHGG 124
GY PQ+ ++L+ Y + LK L+H + + + + D+V NH T
Sbjct: 345 GYDPQSYFALSGMYSEKPKDPSARIAELKQLIHDIHKRGMGVILDVVYNHTAKTYLFEDI 404
Query: 125 KYNRYDGIPLSWDEHAVTSCTGGLGNGSTGDNFHGVPNIDHTQHFVRKDIIAWLRWLRNT 184
+ N Y H + +GS ++F G + T R+ ++ +++L +
Sbjct: 405 EPNYY---------HFMNE------DGSPRESFGG-GRLGTTHAMSRRVLVDSIKYLTSE 448
Query: 185 VGFQDFRFDFARGYSAKYVKEYIEGARPI----FSVGEYW 220
FRFD + A ++ + A+ I +GE W
Sbjct: 449 FKVDGFRFDMMGDHDAAAIELAYKEAKAINPNMIMIGEGW 488
>pdb|1D7F|A Chain A, Crystal Structure Of Asparagine 233-Replaced Cyclodextrin
Glucanotransferase From Alkalophilic Bacillus Sp. 1011
Determined At 1.9 A Resolution
pdb|1D7F|B Chain B, Crystal Structure Of Asparagine 233-Replaced Cyclodextrin
Glucanotransferase From Alkalophilic Bacillus Sp. 1011
Determined At 1.9 A Resolution
pdb|1DED|A Chain A, Crystal Structure Of Alkalophilic Asparagine 233-Replaced
Cyclodextrin Glucanotransferase Complexed With An
Inhibitor, Acarbose, At 2.0 A Resolution
pdb|1DED|B Chain B, Crystal Structure Of Alkalophilic Asparagine 233-Replaced
Cyclodextrin Glucanotransferase Complexed With An
Inhibitor, Acarbose, At 2.0 A Resolution
Length = 686
Score = 31.2 bits (69), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 20/92 (21%), Positives = 37/92 (40%), Gaps = 15/92 (16%)
Query: 37 CKHDWWRNLERKVPD--ISKSGFTSVWLPPATHSF------------APEGYLPQNLYSL 82
C DW + + K+ D ++ G T++W+ + A GY ++
Sbjct: 50 CGGDW-QGIINKINDGYLTGMGITAIWISQPVENIYSVINYSGVNNTAYHGYWARDFKKT 108
Query: 83 NSSYGSEHLLKALLHKMKQHKVRAMADIVINH 114
N +YG+ K L+ H ++ + D NH
Sbjct: 109 NPAYGTMQDFKNLIDTAHAHNIKVIIDFAPNH 140
>pdb|1PAM|A Chain A, Cyclodextrin Glucanotransferase
pdb|1PAM|B Chain B, Cyclodextrin Glucanotransferase
pdb|1I75|A Chain A, Crystal Structure Of Cyclodextrin Glucanotransferase From
Alkalophilic Bacillus Sp.#1011 Complexed With
1-Deoxynojirimycin
pdb|1I75|B Chain B, Crystal Structure Of Cyclodextrin Glucanotransferase From
Alkalophilic Bacillus Sp.#1011 Complexed With
1-Deoxynojirimycin
pdb|1UKQ|A Chain A, Crystal Structure Of Cyclodextrin Glucanotransferase
Complexed With A Pseudo-Maltotetraose Derived From
Acarbose
pdb|1UKQ|B Chain B, Crystal Structure Of Cyclodextrin Glucanotransferase
Complexed With A Pseudo-Maltotetraose Derived From
Acarbose
Length = 686
Score = 31.2 bits (69), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 20/92 (21%), Positives = 37/92 (40%), Gaps = 15/92 (16%)
Query: 37 CKHDWWRNLERKVPD--ISKSGFTSVWLPPATHSF------------APEGYLPQNLYSL 82
C DW + + K+ D ++ G T++W+ + A GY ++
Sbjct: 50 CGGDW-QGIINKINDGYLTGMGITAIWISQPVENIYSVINYSGVNNTAYHGYWARDFKKT 108
Query: 83 NSSYGSEHLLKALLHKMKQHKVRAMADIVINH 114
N +YG+ K L+ H ++ + D NH
Sbjct: 109 NPAYGTMQDFKNLIDTAHAHNIKVIIDFAPNH 140
>pdb|1V3K|A Chain A, Crystal Structure Of F283y Mutant Cyclodextrin
Glycosyltransferase
pdb|1V3K|B Chain B, Crystal Structure Of F283y Mutant Cyclodextrin
Glycosyltransferase
pdb|1V3M|A Chain A, Crystal Structure Of F283y Mutant Cyclodextrin
Glycosyltransferase Complexed With A Pseudo-Tetraose
Derived From Acarbose
pdb|1V3M|B Chain B, Crystal Structure Of F283y Mutant Cyclodextrin
Glycosyltransferase Complexed With A Pseudo-Tetraose
Derived From Acarbose
Length = 686
Score = 31.2 bits (69), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 20/92 (21%), Positives = 37/92 (40%), Gaps = 15/92 (16%)
Query: 37 CKHDWWRNLERKVPD--ISKSGFTSVWLPPATHSF------------APEGYLPQNLYSL 82
C DW + + K+ D ++ G T++W+ + A GY ++
Sbjct: 50 CGGDW-QGIINKINDGYLTGMGITAIWISQPVENIYSVINYSGVNNTAYHGYWARDFKKT 108
Query: 83 NSSYGSEHLLKALLHKMKQHKVRAMADIVINH 114
N +YG+ K L+ H ++ + D NH
Sbjct: 109 NPAYGTMQDFKNLIDTAHAHNIKVIIDFAPNH 140
>pdb|1V3J|A Chain A, Crystal Structure Of F283l Mutant Cyclodextrin
Glycosyltransferase
pdb|1V3J|B Chain B, Crystal Structure Of F283l Mutant Cyclodextrin
Glycosyltransferase
pdb|1V3L|A Chain A, Crystal Structure Of F283l Mutant Cyclodextrin
Glycosyltransferase Complexed With A Pseudo-tetraose
Derived From Acarbose
pdb|1V3L|B Chain B, Crystal Structure Of F283l Mutant Cyclodextrin
Glycosyltransferase Complexed With A Pseudo-tetraose
Derived From Acarbose
Length = 686
Score = 31.2 bits (69), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 20/92 (21%), Positives = 37/92 (40%), Gaps = 15/92 (16%)
Query: 37 CKHDWWRNLERKVPD--ISKSGFTSVWLPPATHSF------------APEGYLPQNLYSL 82
C DW + + K+ D ++ G T++W+ + A GY ++
Sbjct: 50 CGGDW-QGIINKINDGYLTGMGITAIWISQPVENIYSVINYSGVNNTAYHGYWARDFKKT 108
Query: 83 NSSYGSEHLLKALLHKMKQHKVRAMADIVINH 114
N +YG+ K L+ H ++ + D NH
Sbjct: 109 NPAYGTMQDFKNLIDTAHAHNIKVIIDFAPNH 140
>pdb|1UKS|A Chain A, Crystal Structure Of F183lF259L MUTANT CYCLODEXTRIN
Glucanotransferase Complexed With A Pseudo-Maltotetraose
Derived From Acarbose
pdb|1UKS|B Chain B, Crystal Structure Of F183lF259L MUTANT CYCLODEXTRIN
Glucanotransferase Complexed With A Pseudo-Maltotetraose
Derived From Acarbose
Length = 686
Score = 31.2 bits (69), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 20/92 (21%), Positives = 37/92 (40%), Gaps = 15/92 (16%)
Query: 37 CKHDWWRNLERKVPD--ISKSGFTSVWLPPATHSF------------APEGYLPQNLYSL 82
C DW + + K+ D ++ G T++W+ + A GY ++
Sbjct: 50 CGGDW-QGIINKINDGYLTGMGITAIWISQPVENIYSVINYSGVNNTAYHGYWARDFKKT 108
Query: 83 NSSYGSEHLLKALLHKMKQHKVRAMADIVINH 114
N +YG+ K L+ H ++ + D NH
Sbjct: 109 NPAYGTMQDFKNLIDTAHAHNIKVIIDFAPNH 140
>pdb|1H3G|A Chain A, Cyclomaltodextrinase From Flavobacterium Sp. No. 92: From
Dna Sequence To Protein Structure
pdb|1H3G|B Chain B, Cyclomaltodextrinase From Flavobacterium Sp. No. 92: From
Dna Sequence To Protein Structure
Length = 601
Score = 30.8 bits (68), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 44/195 (22%), Positives = 74/195 (37%), Gaps = 31/195 (15%)
Query: 52 ISKSGFTSVWLPPATH----SFAPEGYLPQNLYSLNSSYGSEHLLKALLHKMKQHKVRAM 107
I+ GFT +W P +++ GY + Y ++ YGS L + ++ +
Sbjct: 157 IAGLGFTQLWPTPLVENDAAAYSYHGYAATDHYRIDPRYGSNEDFVRLSTEARKRGXGLI 216
Query: 108 ADIVINHRVGTTQ------------GHGGKYNRYDGIPLSWDEHAVT---SCTGGLGNGS 152
D+V++H +G +GGK+ +P AV + N +
Sbjct: 217 QDVVLSH-IGKHHWWXKDLPTPDWINYGGKF-----VPTQHHRVAVQDPYAAQADSENFT 270
Query: 153 TGDNFHGVPNIDHTQHFVRKDIIAWLRWLRNTVGFQDFRFDFARGYS-AKYVKEY---IE 208
G G P+++ T V +I W G R D GYS ++ EY +
Sbjct: 271 KGWFVEGXPDLNQTNPLVANYLIQNNIWWIEYAGLSGLRID-TYGYSDGAFLTEYTRRLX 329
Query: 209 GARP-IFSVGEYWDS 222
P + VGE W +
Sbjct: 330 AEYPRLNXVGEEWST 344
>pdb|4GKL|A Chain A, Crystal Structure Of A Noncanonic Maltogenic Alpha-amylase
Amyb From Thermotoga Neapolitana
pdb|4GKL|B Chain B, Crystal Structure Of A Noncanonic Maltogenic Alpha-amylase
Amyb From Thermotoga Neapolitana
Length = 422
Score = 30.8 bits (68), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 42/231 (18%), Positives = 85/231 (36%), Gaps = 38/231 (16%)
Query: 44 NLERKVPDISKSGFTSVWLPPATHSFAPEG--------YLPQNLYSLNSSYGSEHLLKAL 95
+LE+ + + G +VWL P H EG Y ++ Y ++ G++ K
Sbjct: 26 SLEKDLERLKGMGINTVWLMP-IHPTGVEGRKGTLGSPYAIRDYYEIDLLIGTKGDFKKF 84
Query: 96 LHKMKQHKVRAMADIVINHRVGTTQGHGGKYNRYDGIPLSWDEHAVTSCTGGLGNGSTGD 155
+ + + + + D+V+NH + D V G+
Sbjct: 85 VKRAHELNMYVLMDMVLNHA-------------------AVDNVLVKKHPEWFLRDENGN 125
Query: 156 NFHGVP------NIDHTQHFVRKDIIAWLRWLRNTVGFQDFRFDFARGYSAKY---VKEY 206
VP + D++ +R+ +I +R+ FR D A + ++
Sbjct: 126 PTRKVPDWSDVVDFDYSNGELREYMINMMRYWVEEFDVDGFRCDVAGLVPLDFWLQARKN 185
Query: 207 IEGARPIFSVGEYWDSCNYNSHGLDYNQDSHRQRIINWIDGTGQLSAAFDF 257
++ + + + E D Y + + Y+ D + R ++I+G L DF
Sbjct: 186 LDPVKRLIWISETHDPYMYQAFDITYDYDGY-YRFRDFIEGKNSLREYIDF 235
>pdb|3A47|A Chain A, Crystal Structure Of Isomaltase From Saccharomyces
Cerevisiae
pdb|3A4A|A Chain A, Crystal Structure Of Isomaltase From Saccharomyces
Cerevisiae
pdb|3AJ7|A Chain A, Crystal Structure Of Isomaltase From Saccharomyces
Cerevisiae
Length = 589
Score = 30.4 bits (67), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 19/73 (26%), Positives = 36/73 (49%), Gaps = 1/73 (1%)
Query: 43 RNLERKVPDISKSGFTSVWLPPATHSFAPE-GYLPQNLYSLNSSYGSEHLLKALLHKMKQ 101
+ + K+ I + G ++W+ P S + GY N + +YG+ AL+ K +
Sbjct: 40 KGIASKLEYIKELGADAIWISPFYDSPQDDMGYDIANYEKVWPTYGTNEDCFALIEKTHK 99
Query: 102 HKVRAMADIVINH 114
++ + D+VINH
Sbjct: 100 LGMKFITDLVINH 112
>pdb|3AXH|A Chain A, Crystal Structure Of Isomaltase In Complex With Isomaltose
pdb|3AXI|A Chain A, Crystal Structure Of Isomaltase In Complex With Maltose
Length = 589
Score = 30.4 bits (67), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 19/73 (26%), Positives = 36/73 (49%), Gaps = 1/73 (1%)
Query: 43 RNLERKVPDISKSGFTSVWLPPATHSFAPE-GYLPQNLYSLNSSYGSEHLLKALLHKMKQ 101
+ + K+ I + G ++W+ P S + GY N + +YG+ AL+ K +
Sbjct: 40 KGIASKLEYIKELGADAIWISPFYDSPQDDMGYDIANYEKVWPTYGTNEDCFALIEKTHK 99
Query: 102 HKVRAMADIVINH 114
++ + D+VINH
Sbjct: 100 LGMKFITDLVINH 112
>pdb|1BF2|A Chain A, Structure Of Pseudomonas Isoamylase
Length = 750
Score = 30.4 bits (67), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 33/136 (24%), Positives = 49/136 (36%), Gaps = 20/136 (14%)
Query: 73 GYLPQNLYSLNSSY-------GSEHLLKALLHKMKQHKVRAMADIVINHRVGTTQGHGGK 125
GY+ +N +S + Y G +A++ ++ D+V NH GG
Sbjct: 249 GYMTENYFSPDRRYAYNKAAGGPTAEFQAMVQAFHNAGIKVYMDVVYNHTA-----EGGT 303
Query: 126 YNRYD---GIPLSW---DEHAVTSCTGGLGNGSTGDNFHGVPNIDHTQHFVRKDIIAWLR 179
+ D SW D T G N DN N + + I+ L
Sbjct: 304 WTSSDPTTATIYSWRGLDNATYYELTSG--NQYFYDNTGIGANFNTYNTVAQNLIVDSLA 361
Query: 180 WLRNTVGFQDFRFDFA 195
+ NT+G FRFD A
Sbjct: 362 YWANTMGVDGFRFDLA 377
>pdb|3BMV|A Chain A, Cyclodextrin Glycosyl Transferase From
Thermoanerobacterium Thermosulfurigenes Em1 Mutant S77p
pdb|3BMW|A Chain A, Cyclodextrin Glycosyl Transferase From
Thermoanerobacterium Thermosulfurigenes Em1 Mutant S77p
Complexed With A Maltoheptaose Inhibitor
Length = 683
Score = 29.6 bits (65), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 20/88 (22%), Positives = 40/88 (45%), Gaps = 15/88 (17%)
Query: 42 WRNLERKVPD--ISKSGFTSVWLP-PATHSFA--PE----------GYLPQNLYSLNSSY 86
W+ + K+ D ++ G T++W+P P + +A P+ GY ++ N +
Sbjct: 54 WQGIINKINDGYLTGMGVTAIWIPQPVENIYAVLPDSTFGGSTSYHGYWARDFKRTNPYF 113
Query: 87 GSEHLLKALLHKMKQHKVRAMADIVINH 114
GS + L++ H ++ + D NH
Sbjct: 114 GSFTDFQNLINTAHAHNIKVIIDFAPNH 141
>pdb|4DM1|A Chain A, Contribution Of Disulfide Bond Toward Thermostability In
Hyperthermostable Endocellulase
pdb|4DM1|B Chain B, Contribution Of Disulfide Bond Toward Thermostability In
Hyperthermostable Endocellulase
pdb|4DM1|C Chain C, Contribution Of Disulfide Bond Toward Thermostability In
Hyperthermostable Endocellulase
Length = 377
Score = 29.3 bits (64), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 35/81 (43%), Gaps = 2/81 (2%)
Query: 41 WWRNLERKVPDISKSGFTSVWLPPATHSFAPEGYLPQNL-YSLNSSYGSEHLLKALLHKM 99
W RN E + I GF ++ LP T S P G P + YS N L+ + +
Sbjct: 49 WKRNWEDMLLQIKSLGFNAIRLPFCTESVKP-GTQPIGIDYSKNPDLRGLDSLQIMEKII 107
Query: 100 KQHKVRAMADIVINHRVGTTQ 120
K+ + ++ HR+G T
Sbjct: 108 KKAGDLGIFVLLDYHRIGCTH 128
>pdb|3K8L|A Chain A, Crystal Structure Of Susg-D498n Mutant With Maltoheptaose
pdb|3K8L|B Chain B, Crystal Structure Of Susg-D498n Mutant With Maltoheptaose
Length = 669
Score = 28.9 bits (63), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 15/70 (21%), Positives = 32/70 (45%)
Query: 45 LERKVPDISKSGFTSVWLPPATHSFAPEGYLPQNLYSLNSSYGSEHLLKALLHKMKQHKV 104
+ +K+ +++ G ++WL P + GY + +N G+E L+ + +
Sbjct: 62 VTQKLDYLNQLGVKALWLSPIHPCMSYHGYDVTDYTKVNPQLGTESDFDRLVTEAHNRGI 121
Query: 105 RAMADIVINH 114
+ D V+NH
Sbjct: 122 KIYLDYVMNH 131
>pdb|2ZUM|A Chain A, Functional Analysis Of Hyperthermophilic Endocellulase
From The Archaeon Pyrococcus Horikoshii
pdb|2ZUN|A Chain A, Functional Analysis Of Hyperthermophilic Endocellulase
From The Archaeon Pyrococcus Horikoshii
pdb|2ZUN|B Chain B, Functional Analysis Of Hyperthermophilic Endocellulase
From The Archaeon Pyrococcus Horikoshii
pdb|2ZUN|C Chain C, Functional Analysis Of Hyperthermophilic Endocellulase
From The Archaeon Pyrococcus Horikoshii
Length = 458
Score = 28.9 bits (63), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 35/81 (43%), Gaps = 2/81 (2%)
Query: 41 WWRNLERKVPDISKSGFTSVWLPPATHSFAPEGYLPQNL-YSLNSSYGSEHLLKALLHKM 99
W RN E + I GF ++ LP T S P G P + YS N L+ + +
Sbjct: 82 WKRNWEDMLLQIKSLGFNAIRLPFCTESVKP-GTQPIGIDYSKNPDLRGLDSLQIMEKII 140
Query: 100 KQHKVRAMADIVINHRVGTTQ 120
K+ + ++ HR+G T
Sbjct: 141 KKAGDLGIFVLLDYHRIGCTH 161
>pdb|3AXX|A Chain A, Functional Analysis Of Hyperthermophilic Endocellulase
From The Archaeon Pyrococcus Horikoshii
pdb|3AXX|B Chain B, Functional Analysis Of Hyperthermophilic Endocellulase
From The Archaeon Pyrococcus Horikoshii
pdb|3AXX|C Chain C, Functional Analysis Of Hyperthermophilic Endocellulase
From The Archaeon Pyrococcus Horikoshii
Length = 458
Score = 28.9 bits (63), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 35/81 (43%), Gaps = 2/81 (2%)
Query: 41 WWRNLERKVPDISKSGFTSVWLPPATHSFAPEGYLPQNL-YSLNSSYGSEHLLKALLHKM 99
W RN E + I GF ++ LP T S P G P + YS N L+ + +
Sbjct: 82 WKRNWEDMLLQIKSLGFNAIRLPFCTESVKP-GTQPIGIDYSKNPDLRGLDSLQIMEKII 140
Query: 100 KQHKVRAMADIVINHRVGTTQ 120
K+ + ++ HR+G T
Sbjct: 141 KKAGDLGIFVLLDYHRIGCTH 161
>pdb|3QHO|A Chain A, Crystal Analysis Of The Complex Structure,
Y299f-Cellotetraose, Of Endocellulase From Pyrococcus
Horikoshii
pdb|3QHO|B Chain B, Crystal Analysis Of The Complex Structure,
Y299f-Cellotetraose, Of Endocellulase From Pyrococcus
Horikoshii
pdb|3QHO|C Chain C, Crystal Analysis Of The Complex Structure,
Y299f-Cellotetraose, Of Endocellulase From Pyrococcus
Horikoshii
Length = 458
Score = 28.9 bits (63), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 35/81 (43%), Gaps = 2/81 (2%)
Query: 41 WWRNLERKVPDISKSGFTSVWLPPATHSFAPEGYLPQNL-YSLNSSYGSEHLLKALLHKM 99
W RN E + I GF ++ LP T S P G P + YS N L+ + +
Sbjct: 82 WKRNWEDMLLQIKSLGFNAIRLPFCTESVKP-GTQPIGIDYSKNPDLRGLDSLQIMEKII 140
Query: 100 KQHKVRAMADIVINHRVGTTQ 120
K+ + ++ HR+G T
Sbjct: 141 KKAGDLGIFVLLDYHRIGCTH 161
>pdb|3QHN|A Chain A, Crystal Analysis Of The Complex Structure,
E201a-Cellotetraose, Of Endocellulase From Pyrococcus
Horikoshii
pdb|3QHN|B Chain B, Crystal Analysis Of The Complex Structure,
E201a-Cellotetraose, Of Endocellulase From Pyrococcus
Horikoshii
pdb|3QHN|C Chain C, Crystal Analysis Of The Complex Structure,
E201a-Cellotetraose, Of Endocellulase From Pyrococcus
Horikoshii
Length = 458
Score = 28.9 bits (63), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 40/94 (42%), Gaps = 6/94 (6%)
Query: 32 FNWESCKHD----WWRNLERKVPDISKSGFTSVWLPPATHSFAPEGYLPQNL-YSLNSSY 86
F +E+ H W RN E + I GF ++ LP T S P G P + YS N
Sbjct: 69 FGFETPNHVVHGLWKRNWEDMLLQIKSLGFNAIRLPFCTESVKP-GTQPIGIDYSKNPDL 127
Query: 87 GSEHLLKALLHKMKQHKVRAMADIVINHRVGTTQ 120
L+ + +K+ + ++ HR+G T
Sbjct: 128 RGLDSLQIMEKIIKKAGDLGIFVLLDYHRIGCTH 161
>pdb|3QHM|A Chain A, Crystal Analysis Of The Complex Structure,
E342a-Cellotetraose, Of Endocellulase From Pyrococcus
Horikoshii
pdb|3QHM|B Chain B, Crystal Analysis Of The Complex Structure,
E342a-Cellotetraose, Of Endocellulase From Pyrococcus
Horikoshii
pdb|3QHM|C Chain C, Crystal Analysis Of The Complex Structure,
E342a-Cellotetraose, Of Endocellulase From Pyrococcus
Horikoshii
Length = 458
Score = 28.9 bits (63), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 40/94 (42%), Gaps = 6/94 (6%)
Query: 32 FNWESCKHD----WWRNLERKVPDISKSGFTSVWLPPATHSFAPEGYLPQNL-YSLNSSY 86
F +E+ H W RN E + I GF ++ LP T S P G P + YS N
Sbjct: 69 FGFETPNHVVHGLWKRNWEDMLLQIKSLGFNAIRLPFCTESVKP-GTQPIGIDYSKNPDL 127
Query: 87 GSEHLLKALLHKMKQHKVRAMADIVINHRVGTTQ 120
L+ + +K+ + ++ HR+G T
Sbjct: 128 RGLDSLQIMEKIIKKAGDLGIFVLLDYHRIGCTH 161
>pdb|2YV1|A Chain A, Crystal Structure Of Succinyl-Coa Synthetase Alpha Chain
From Methanocaldococcus Jannaschii Dsm 2661
Length = 294
Score = 28.5 bits (62), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 16/31 (51%)
Query: 142 TSCTGGLGNGSTGDNFHGVPNIDHTQHFVRK 172
T GG+ G G N HGVP D + V++
Sbjct: 38 TKIVGGVTPGKGGQNVHGVPVFDTVKEAVKE 68
>pdb|1UKT|A Chain A, Crystal Structure Of Y100l Mutant Cyclodextrin
Glucanotransferase Compexed With An Acarbose
pdb|1UKT|B Chain B, Crystal Structure Of Y100l Mutant Cyclodextrin
Glucanotransferase Compexed With An Acarbose
Length = 686
Score = 28.5 bits (62), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 19/92 (20%), Positives = 36/92 (39%), Gaps = 15/92 (16%)
Query: 37 CKHDWWRNLERKVPD--ISKSGFTSVWLPPATHSF------------APEGYLPQNLYSL 82
C DW + + K+ D ++ G T++W+ + A G ++
Sbjct: 50 CGGDW-QGIINKINDGYLTGMGITAIWISQPVENIYSVINYSGVNNTAYHGLWARDFKKT 108
Query: 83 NSSYGSEHLLKALLHKMKQHKVRAMADIVINH 114
N +YG+ K L+ H ++ + D NH
Sbjct: 109 NPAYGTMQDFKNLIDTAHAHNIKVIIDFAPNH 140
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.137 0.455
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,463,776
Number of Sequences: 62578
Number of extensions: 527785
Number of successful extensions: 1334
Number of sequences better than 100.0: 122
Number of HSP's better than 100.0 without gapping: 54
Number of HSP's successfully gapped in prelim test: 68
Number of HSP's that attempted gapping in prelim test: 1120
Number of HSP's gapped (non-prelim): 171
length of query: 314
length of database: 14,973,337
effective HSP length: 99
effective length of query: 215
effective length of database: 8,778,115
effective search space: 1887294725
effective search space used: 1887294725
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (24.3 bits)