Query 021281
Match_columns 314
No_of_seqs 182 out of 1942
Neff 7.8
Searched_HMMs 46136
Date Fri Mar 29 09:01:19 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021281.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/021281hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02361 alpha-amylase 100.0 1.8E-64 3.8E-69 482.4 29.9 291 21-311 7-299 (401)
2 PLN02784 alpha-amylase 100.0 1.9E-61 4.2E-66 485.5 31.5 294 17-311 494-792 (894)
3 PLN00196 alpha-amylase; Provis 100.0 9.7E-61 2.1E-65 461.4 28.0 296 16-312 16-326 (428)
4 PRK09441 cytoplasmic alpha-amy 100.0 6.9E-54 1.5E-58 422.2 28.1 268 25-308 3-338 (479)
5 PRK09505 malS alpha-amylase; R 100.0 7E-46 1.5E-50 374.2 24.2 268 18-308 183-574 (683)
6 PRK10785 maltodextrin glucosid 100.0 1.8E-46 3.9E-51 377.5 19.2 241 40-308 176-455 (598)
7 TIGR02456 treS_nterm trehalose 100.0 6.7E-45 1.5E-49 362.8 20.4 262 24-303 4-310 (539)
8 PF00128 Alpha-amylase: Alpha 100.0 1.1E-45 2.4E-50 341.2 12.3 249 40-306 1-277 (316)
9 TIGR02403 trehalose_treC alpha 100.0 5.8E-44 1.3E-48 355.9 19.9 268 25-309 4-328 (543)
10 PRK10933 trehalose-6-phosphate 100.0 4.8E-43 1E-47 349.3 21.4 272 19-309 5-334 (551)
11 TIGR02402 trehalose_TreZ malto 100.0 4.4E-40 9.5E-45 327.4 21.4 210 24-269 92-317 (542)
12 TIGR02100 glgX_debranch glycog 100.0 2.5E-38 5.5E-43 321.3 23.3 256 24-303 154-452 (688)
13 TIGR02104 pulA_typeI pullulana 100.0 6.8E-39 1.5E-43 323.4 17.6 259 24-304 126-442 (605)
14 TIGR01515 branching_enzym alph 100.0 3.3E-38 7.1E-43 318.5 20.3 214 26-267 139-383 (613)
15 PRK13840 sucrose phosphorylase 100.0 4.3E-38 9.4E-43 306.1 20.2 245 26-303 4-294 (495)
16 PRK03705 glycogen debranching 100.0 2.9E-37 6.4E-42 311.6 23.2 252 24-303 149-446 (658)
17 PRK12313 glycogen branching en 100.0 4.2E-37 9E-42 312.0 21.1 214 25-267 147-396 (633)
18 TIGR02102 pullulan_Gpos pullul 100.0 1.1E-36 2.5E-41 318.4 23.7 259 23-304 449-763 (1111)
19 PRK05402 glycogen branching en 100.0 1.7E-36 3.6E-41 311.3 19.4 183 25-221 241-460 (726)
20 PRK14510 putative bifunctional 100.0 5.2E-36 1.1E-40 319.5 20.4 258 24-308 157-459 (1221)
21 TIGR03852 sucrose_gtfA sucrose 100.0 5.2E-36 1.1E-40 290.0 16.6 241 26-301 2-289 (470)
22 PRK14706 glycogen branching en 100.0 2.4E-35 5.3E-40 297.1 21.4 249 26-304 145-428 (639)
23 PLN02960 alpha-amylase 100.0 1E-34 2.2E-39 293.9 21.6 246 24-301 394-681 (897)
24 PRK12568 glycogen branching en 100.0 1.5E-34 3.3E-39 291.7 21.8 249 23-302 244-531 (730)
25 COG0366 AmyA Glycosidases [Car 100.0 1.6E-35 3.4E-40 292.3 11.3 184 26-210 1-226 (505)
26 PLN02447 1,4-alpha-glucan-bran 100.0 3.6E-34 7.8E-39 289.5 21.2 248 24-303 228-517 (758)
27 PRK14705 glycogen branching en 100.0 4.4E-34 9.5E-39 300.8 19.3 183 26-222 748-961 (1224)
28 KOG2212 Alpha-amylase [Carbohy 100.0 2.7E-33 5.9E-38 254.0 18.0 268 12-307 15-323 (504)
29 KOG0471 Alpha-amylase [Carbohy 100.0 5.6E-34 1.2E-38 283.3 14.1 205 19-226 12-245 (545)
30 TIGR02455 TreS_stutzeri trehal 100.0 4.2E-31 9.2E-36 259.3 19.5 235 46-301 77-404 (688)
31 TIGR02103 pullul_strch alpha-1 100.0 3.6E-31 7.9E-36 272.5 19.2 189 23-222 250-529 (898)
32 COG0296 GlgB 1,4-alpha-glucan 100.0 7.8E-31 1.7E-35 259.7 19.2 185 25-223 144-361 (628)
33 COG1523 PulA Type II secretory 100.0 2.4E-30 5.1E-35 259.9 14.6 255 19-301 165-470 (697)
34 PLN02877 alpha-amylase/limit d 100.0 2.7E-29 5.8E-34 258.5 20.1 188 24-222 338-600 (970)
35 TIGR02401 trehalose_TreY malto 100.0 4E-29 8.7E-34 254.1 20.0 182 39-222 12-287 (825)
36 smart00642 Aamy Alpha-amylase 99.9 7.4E-27 1.6E-31 199.1 10.4 92 26-117 1-97 (166)
37 KOG0470 1,4-alpha-glucan branc 99.9 4.8E-26 1E-30 224.4 14.7 160 25-198 229-407 (757)
38 PRK14511 maltooligosyl trehalo 99.9 2.1E-23 4.5E-28 213.4 18.5 178 40-219 17-329 (879)
39 PLN03244 alpha-amylase; Provis 99.9 3E-22 6.5E-27 200.5 15.3 107 75-195 426-533 (872)
40 PRK14507 putative bifunctional 99.9 2.1E-21 4.6E-26 209.3 18.6 79 39-117 754-834 (1693)
41 COG3280 TreY Maltooligosyl tre 99.8 1.2E-19 2.6E-24 179.0 14.5 177 41-219 17-332 (889)
42 TIGR01531 glyc_debranch glycog 99.6 2.9E-15 6.3E-20 158.3 8.4 83 40-122 129-217 (1464)
43 PF14872 GHL5: Hypothetical gl 99.2 1.1E-09 2.3E-14 107.8 18.0 153 19-198 172-393 (811)
44 PF14701 hDGE_amylase: glucano 99.0 1.3E-09 2.8E-14 104.5 8.0 84 40-123 19-110 (423)
45 PF02638 DUF187: Glycosyl hydr 98.8 2.9E-08 6.2E-13 93.0 11.5 141 41-194 17-162 (311)
46 PF02324 Glyco_hydro_70: Glyco 98.8 1.7E-08 3.6E-13 100.2 8.2 93 25-117 564-674 (809)
47 PF14871 GHL6: Hypothetical gl 98.6 7E-07 1.5E-11 73.2 10.9 126 46-193 3-131 (132)
48 COG1649 Uncharacterized protei 98.3 4.7E-06 1E-10 80.1 9.9 141 41-195 62-208 (418)
49 PF02324 Glyco_hydro_70: Glyco 98.0 1.8E-05 3.9E-10 79.2 7.5 130 154-302 137-298 (809)
50 KOG3625 Alpha amylase [Carbohy 97.8 2.1E-05 4.6E-10 80.6 4.7 80 42-121 141-228 (1521)
51 cd06592 GH31_glucosidase_KIAA1 97.7 0.00033 7.1E-09 65.5 10.9 135 41-197 28-166 (303)
52 cd06593 GH31_xylosidase_YicI Y 97.7 0.00039 8.4E-09 65.0 10.8 138 41-200 22-163 (308)
53 PF02065 Melibiase: Melibiase; 97.6 0.0015 3.2E-08 63.2 13.3 138 41-198 56-195 (394)
54 cd06597 GH31_transferase_CtsY 97.4 0.00056 1.2E-08 65.0 7.8 150 41-197 22-188 (340)
55 PRK14582 pgaB outer membrane N 97.3 0.0074 1.6E-07 62.0 15.0 151 20-194 308-466 (671)
56 PF13199 Glyco_hydro_66: Glyco 97.3 0.0012 2.6E-08 66.3 9.0 152 32-196 107-268 (559)
57 cd06599 GH31_glycosidase_Aec37 97.1 0.0046 9.9E-08 58.2 10.5 137 42-196 28-168 (317)
58 PF13200 DUF4015: Putative gly 96.6 0.021 4.5E-07 53.6 10.9 132 41-196 11-147 (316)
59 cd06594 GH31_glucosidase_YihQ 96.6 0.0057 1.2E-07 57.6 7.2 142 41-199 21-169 (317)
60 PF14488 DUF4434: Domain of un 96.6 0.012 2.5E-07 50.2 8.2 83 26-113 3-88 (166)
61 cd06591 GH31_xylosidase_XylS X 96.5 0.0072 1.6E-07 56.9 6.8 134 41-196 22-159 (319)
62 cd06600 GH31_MGAM-like This fa 96.3 0.0095 2.1E-07 56.0 6.3 136 41-197 22-161 (317)
63 PF00150 Cellulase: Cellulase 96.2 0.0088 1.9E-07 54.3 5.8 80 23-113 4-85 (281)
64 PF01055 Glyco_hydro_31: Glyco 96.1 0.0064 1.4E-07 59.6 4.2 137 41-197 41-181 (441)
65 PRK10658 putative alpha-glucos 95.8 0.022 4.7E-07 58.9 6.8 135 43-199 283-421 (665)
66 PRK10426 alpha-glucosidase; Pr 95.7 0.066 1.4E-06 55.1 10.0 140 42-199 220-366 (635)
67 cd06602 GH31_MGAM_SI_GAA This 95.7 0.029 6.4E-07 53.3 6.8 139 41-197 22-166 (339)
68 cd06598 GH31_transferase_CtsZ 95.5 0.036 7.8E-07 52.1 6.5 137 41-196 22-164 (317)
69 COG3589 Uncharacterized conser 95.4 0.063 1.4E-06 50.2 7.5 67 29-113 6-72 (360)
70 cd06604 GH31_glucosidase_II_Ma 95.2 0.04 8.6E-07 52.3 5.9 134 41-196 22-159 (339)
71 PLN02635 disproportionating en 95.2 0.04 8.6E-07 55.4 6.1 58 21-78 26-90 (538)
72 cd06542 GH18_EndoS-like Endo-b 94.9 0.13 2.9E-06 46.4 8.3 82 88-212 49-143 (255)
73 cd06562 GH20_HexA_HexB-like Be 94.6 0.37 8.1E-06 45.9 11.0 119 41-185 16-148 (348)
74 COG1501 Alpha-glucosidases, fa 94.4 0.1 2.2E-06 54.8 6.9 95 91-199 322-418 (772)
75 PF02446 Glyco_hydro_77: 4-alp 94.3 0.13 2.9E-06 51.3 7.3 46 38-83 13-61 (496)
76 PF07745 Glyco_hydro_53: Glyco 94.1 0.12 2.5E-06 49.0 6.1 54 46-112 27-80 (332)
77 PRK14508 4-alpha-glucanotransf 94.0 0.13 2.7E-06 51.5 6.5 67 23-89 5-74 (497)
78 KOG1065 Maltase glucoamylase a 93.9 0.65 1.4E-05 48.4 11.4 154 17-195 291-447 (805)
79 PLN02763 hydrolase, hydrolyzin 93.7 0.18 3.9E-06 54.0 7.3 132 42-195 200-335 (978)
80 PLN03236 4-alpha-glucanotransf 93.7 0.16 3.5E-06 52.8 6.8 72 21-92 58-138 (745)
81 PLN02950 4-alpha-glucanotransf 93.7 0.2 4.4E-06 53.5 7.7 72 22-93 259-339 (909)
82 cd06595 GH31_xylosidase_XylS-l 93.6 0.15 3.3E-06 47.3 5.9 128 41-195 23-158 (292)
83 TIGR01531 glyc_debranch glycog 93.5 0.56 1.2E-05 51.8 10.6 64 157-222 473-545 (1464)
84 PLN02635 disproportionating en 93.5 0.21 4.5E-06 50.3 6.9 18 96-113 230-247 (538)
85 smart00812 Alpha_L_fucos Alpha 93.4 1.2 2.6E-05 43.1 11.9 115 46-197 84-204 (384)
86 TIGR01370 cysRS possible cyste 93.4 0.52 1.1E-05 44.3 9.1 41 156-197 131-171 (315)
87 PF02449 Glyco_hydro_42: Beta- 93.1 0.23 5E-06 47.6 6.6 124 42-196 9-138 (374)
88 cd06601 GH31_lyase_GLase GLase 92.9 0.37 8E-06 45.7 7.4 108 41-195 22-132 (332)
89 cd06545 GH18_3CO4_chitinase Th 92.9 0.79 1.7E-05 41.5 9.3 80 89-211 45-129 (253)
90 PRK11052 malQ 4-alpha-glucanot 92.7 0.3 6.4E-06 50.8 6.9 43 25-67 144-189 (695)
91 PRK14508 4-alpha-glucanotransf 92.4 1.7 3.6E-05 43.6 11.6 24 90-113 198-221 (497)
92 PF14883 GHL13: Hypothetical g 92.4 3.6 7.7E-05 38.1 12.7 126 41-192 15-142 (294)
93 PF10566 Glyco_hydro_97: Glyco 91.8 3 6.4E-05 38.4 11.6 60 41-108 30-91 (273)
94 PF05913 DUF871: Bacterial pro 91.8 0.27 5.9E-06 47.0 5.0 62 38-113 9-70 (357)
95 cd06565 GH20_GcnA-like Glycosy 91.7 0.67 1.4E-05 43.3 7.5 113 41-185 15-130 (301)
96 cd02875 GH18_chitobiase Chitob 91.7 0.43 9.4E-06 45.7 6.3 47 165-211 91-146 (358)
97 PRK11052 malQ 4-alpha-glucanot 91.6 0.49 1.1E-05 49.2 7.0 62 34-96 159-223 (695)
98 cd06564 GH20_DspB_LnbB-like Gl 91.5 1.4 3E-05 41.6 9.5 122 41-186 15-155 (326)
99 cd06603 GH31_GANC_GANAB_alpha 91.5 0.36 7.8E-06 45.8 5.5 134 41-195 22-161 (339)
100 PF01120 Alpha_L_fucos: Alpha- 91.3 2.9 6.2E-05 39.8 11.4 123 45-197 93-217 (346)
101 cd02742 GH20_hexosaminidase Be 91.1 0.66 1.4E-05 43.3 6.8 120 41-183 14-145 (303)
102 cd06589 GH31 The enzymes of gl 91.1 1.7 3.7E-05 39.7 9.3 93 41-197 22-117 (265)
103 TIGR00217 malQ 4-alpha-glucano 91.1 0.79 1.7E-05 46.0 7.7 48 22-69 13-62 (513)
104 cd06569 GH20_Sm-chitobiase-lik 90.6 0.88 1.9E-05 44.9 7.4 77 41-117 20-125 (445)
105 PRK14510 putative bifunctional 89.8 0.63 1.4E-05 51.5 6.2 69 23-91 723-799 (1221)
106 cd02871 GH18_chitinase_D-like 89.4 2.3 4.9E-05 39.8 8.9 63 87-195 57-119 (312)
107 COG3867 Arabinogalactan endo-1 88.8 1.4 3E-05 40.9 6.6 56 46-111 66-125 (403)
108 COG0520 csdA Selenocysteine ly 88.6 1.2 2.5E-05 43.5 6.5 90 14-111 101-200 (405)
109 PF07555 NAGidase: beta-N-acet 88.6 3.6 7.9E-05 38.5 9.5 109 28-196 3-116 (306)
110 PF13204 DUF4038: Protein of u 88.5 1.4 3E-05 40.9 6.7 70 41-114 28-110 (289)
111 PF01301 Glyco_hydro_35: Glyco 88.1 0.56 1.2E-05 44.2 3.9 66 32-110 17-83 (319)
112 cd06568 GH20_SpHex_like A subg 87.9 1.9 4.1E-05 40.8 7.3 124 41-184 16-152 (329)
113 cd06563 GH20_chitobiase-like T 86.9 7 0.00015 37.4 10.7 124 42-183 17-162 (357)
114 PF00728 Glyco_hydro_20: Glyco 86.7 0.9 1.9E-05 42.9 4.4 134 41-192 16-162 (351)
115 cd06570 GH20_chitobiase-like_1 86.6 3.1 6.7E-05 39.1 7.9 123 41-183 16-144 (311)
116 TIGR03849 arch_ComA phosphosul 86.2 2.3 5.1E-05 38.2 6.5 49 44-110 72-120 (237)
117 PRK15447 putative protease; Pr 85.5 1.9 4.2E-05 40.2 5.9 58 31-108 9-66 (301)
118 PF02679 ComA: (2R)-phospho-3- 85.2 2.4 5.2E-05 38.4 6.1 50 43-110 84-133 (244)
119 PF13380 CoA_binding_2: CoA bi 84.8 1.8 3.9E-05 34.4 4.7 43 42-108 65-107 (116)
120 COG2730 BglC Endoglucanase [Ca 83.7 2.1 4.6E-05 41.7 5.5 59 44-110 74-136 (407)
121 COG2342 Predicted extracellula 83.5 16 0.00034 33.7 10.5 122 42-198 29-151 (300)
122 PF02446 Glyco_hydro_77: 4-alp 83.2 1.2 2.5E-05 44.7 3.6 46 174-221 268-336 (496)
123 PF00724 Oxidored_FMN: NADH:fl 83.2 9.5 0.0002 36.2 9.6 73 43-120 36-108 (341)
124 PLN02950 4-alpha-glucanotransf 82.6 3.1 6.8E-05 44.7 6.6 24 90-113 461-484 (909)
125 PLN03236 4-alpha-glucanotransf 82.6 3.2 7E-05 43.4 6.5 29 90-119 274-302 (745)
126 PF14701 hDGE_amylase: glucano 82.0 2.6 5.7E-05 41.1 5.4 53 157-211 360-417 (423)
127 PRK14507 putative bifunctional 81.7 2.5 5.4E-05 48.1 5.7 67 25-91 173-247 (1693)
128 PRK09936 hypothetical protein; 81.1 7.6 0.00016 36.0 7.7 164 19-212 16-200 (296)
129 KOG3625 Alpha amylase [Carbohy 80.8 3.3 7.1E-05 44.0 5.7 66 156-223 494-568 (1521)
130 PF07488 Glyco_hydro_67M: Glyc 80.3 12 0.00026 34.9 8.7 104 41-195 55-159 (328)
131 PLN03059 beta-galactosidase; P 80.3 3.5 7.6E-05 43.6 5.9 54 46-108 62-116 (840)
132 COG0041 PurE Phosphoribosylcar 79.6 6.4 0.00014 32.9 6.1 50 41-109 14-63 (162)
133 PF03198 Glyco_hydro_72: Gluca 79.4 5.4 0.00012 37.3 6.3 57 41-118 51-107 (314)
134 TIGR03356 BGL beta-galactosida 79.3 4.8 0.0001 39.5 6.3 64 41-111 52-115 (427)
135 COG1640 MalQ 4-alpha-glucanotr 78.9 4.4 9.5E-05 40.7 5.8 45 25-69 14-62 (520)
136 PRK05939 hypothetical protein; 78.4 5.8 0.00012 38.5 6.5 84 21-112 83-170 (397)
137 cd02929 TMADH_HD_FMN Trimethyl 77.5 37 0.0008 32.6 11.7 29 89-119 82-110 (370)
138 PRK13210 putative L-xylulose 5 77.1 5.6 0.00012 36.1 5.7 64 31-108 7-70 (284)
139 cd06546 GH18_CTS3_chitinase GH 76.5 30 0.00064 31.4 10.2 46 167-212 93-142 (256)
140 cd02803 OYE_like_FMN_family Ol 76.4 17 0.00038 33.8 9.0 69 46-119 36-104 (327)
141 TIGR01210 conserved hypothetic 76.0 5.4 0.00012 37.4 5.4 60 46-113 117-178 (313)
142 TIGR00539 hemN_rel putative ox 75.6 6.2 0.00013 37.6 5.8 63 47-117 101-164 (360)
143 TIGR00542 hxl6Piso_put hexulos 75.2 6.2 0.00013 36.0 5.5 64 30-107 6-69 (279)
144 PRK07094 biotin synthase; Prov 75.2 6.6 0.00014 36.7 5.8 37 81-118 157-193 (323)
145 KOG0496 Beta-galactosidase [Ca 75.0 6.2 0.00013 40.4 5.7 72 26-110 34-108 (649)
146 PRK14581 hmsF outer membrane N 74.9 57 0.0012 34.1 12.7 133 41-194 332-466 (672)
147 PRK10076 pyruvate formate lyas 74.9 20 0.00043 31.7 8.4 66 42-108 144-211 (213)
148 cd06547 GH85_ENGase Endo-beta- 74.0 4.7 0.0001 38.4 4.4 44 168-211 85-136 (339)
149 TIGR00433 bioB biotin syntheta 73.7 8 0.00017 35.5 5.9 28 87-114 155-182 (296)
150 PRK08207 coproporphyrinogen II 73.7 8.6 0.00019 38.5 6.4 64 46-117 269-333 (488)
151 PTZ00445 p36-lilke protein; Pr 73.7 9.6 0.00021 33.8 5.9 61 42-108 28-96 (219)
152 cd04747 OYE_like_5_FMN Old yel 73.1 90 0.002 29.9 13.3 72 43-119 33-105 (361)
153 PF01373 Glyco_hydro_14: Glyco 72.8 6.3 0.00014 38.2 5.0 67 39-118 12-81 (402)
154 PRK05967 cystathionine beta-ly 72.7 11 0.00023 36.7 6.6 85 21-113 100-189 (395)
155 cd00598 GH18_chitinase-like Th 71.9 21 0.00046 30.6 7.9 47 166-212 84-139 (210)
156 KOG2499 Beta-N-acetylhexosamin 71.9 23 0.00049 35.2 8.5 30 88-117 248-278 (542)
157 PRK13523 NADPH dehydrogenase N 71.6 68 0.0015 30.4 11.7 70 43-118 37-107 (337)
158 PRK01060 endonuclease IV; Prov 71.4 9.6 0.00021 34.6 5.8 53 42-106 11-63 (281)
159 PF01136 Peptidase_U32: Peptid 71.4 62 0.0013 28.5 10.9 36 172-209 156-191 (233)
160 PRK08208 coproporphyrinogen II 71.2 8.4 0.00018 37.8 5.7 30 88-117 175-205 (430)
161 PRK05628 coproporphyrinogen II 71.1 9.5 0.00021 36.5 5.9 34 84-117 138-172 (375)
162 COG1902 NemA NADH:flavin oxido 70.6 66 0.0014 30.9 11.4 28 89-118 82-109 (363)
163 cd02932 OYE_YqiM_FMN Old yello 69.9 82 0.0018 29.6 11.9 72 43-119 33-104 (336)
164 cd02931 ER_like_FMN Enoate red 69.8 82 0.0018 30.4 12.0 28 89-118 82-110 (382)
165 cd04734 OYE_like_3_FMN Old yel 68.8 1.1E+02 0.0023 29.1 14.1 69 43-119 33-104 (343)
166 PRK06256 biotin synthase; Vali 68.7 9.2 0.0002 36.0 5.2 33 81-114 179-211 (336)
167 PRK15014 6-phospho-beta-glucos 67.6 29 0.00062 34.7 8.6 64 41-110 67-130 (477)
168 PF08821 CGGC: CGGC domain; I 67.5 23 0.0005 27.8 6.3 54 42-108 51-104 (107)
169 TIGR00217 malQ 4-alpha-glucano 67.1 13 0.00027 37.5 6.0 46 174-221 294-362 (513)
170 PRK14012 cysteine desulfurase; 66.8 26 0.00056 33.7 8.0 82 22-112 92-183 (404)
171 PLN02651 cysteine desulfurase 66.6 19 0.00042 34.0 6.9 82 22-112 86-177 (364)
172 PLN02801 beta-amylase 66.4 24 0.00051 35.3 7.5 65 41-118 35-102 (517)
173 PRK05660 HemN family oxidoredu 66.4 14 0.0003 35.6 6.0 63 47-117 108-171 (378)
174 PF01212 Beta_elim_lyase: Beta 66.4 5.5 0.00012 36.9 3.1 24 88-111 143-166 (290)
175 PRK15452 putative protease; Pr 66.3 17 0.00037 35.9 6.6 48 49-108 16-64 (443)
176 TIGR01233 lacG 6-phospho-beta- 66.2 44 0.00096 33.2 9.6 63 41-110 51-113 (467)
177 COG1306 Uncharacterized conser 66.0 34 0.00074 32.0 7.9 134 42-195 76-218 (400)
178 cd07937 DRE_TIM_PC_TC_5S Pyruv 65.8 1.1E+02 0.0024 28.0 12.4 95 44-211 92-188 (275)
179 TIGR00510 lipA lipoate synthas 65.7 28 0.00061 32.5 7.7 80 14-108 200-279 (302)
180 TIGR02006 IscS cysteine desulf 65.6 18 0.00039 34.8 6.6 81 23-112 91-181 (402)
181 PRK01278 argD acetylornithine 65.4 19 0.00041 34.4 6.7 60 41-117 164-223 (389)
182 PRK08446 coproporphyrinogen II 65.3 14 0.00031 35.1 5.7 62 47-116 99-161 (350)
183 PRK13347 coproporphyrinogen II 65.1 16 0.00034 36.1 6.2 34 84-117 182-216 (453)
184 cd06543 GH18_PF-ChiA-like PF-C 65.0 51 0.0011 30.6 9.2 96 50-196 19-114 (294)
185 TIGR03471 HpnJ hopanoid biosyn 64.7 17 0.00038 35.9 6.4 29 88-116 321-349 (472)
186 cd02933 OYE_like_FMN Old yello 64.7 80 0.0017 29.9 10.7 29 89-119 76-104 (338)
187 PLN02411 12-oxophytodienoate r 64.2 56 0.0012 31.7 9.7 29 89-119 86-114 (391)
188 PLN02905 beta-amylase 64.1 27 0.0006 35.8 7.5 65 41-118 284-351 (702)
189 TIGR01162 purE phosphoribosyla 63.7 18 0.00039 30.4 5.3 49 41-108 10-58 (156)
190 PRK13511 6-phospho-beta-galact 63.7 50 0.0011 32.8 9.4 63 41-110 52-114 (469)
191 PRK12928 lipoyl synthase; Prov 63.6 32 0.00069 31.9 7.6 84 12-110 195-278 (290)
192 PRK05904 coproporphyrinogen II 63.6 17 0.00036 34.7 5.9 63 47-117 104-167 (353)
193 PLN02803 beta-amylase 63.4 29 0.00063 34.9 7.5 65 41-118 105-172 (548)
194 PLN02161 beta-amylase 63.4 31 0.00067 34.5 7.6 64 41-117 115-181 (531)
195 TIGR00538 hemN oxygen-independ 63.3 17 0.00036 35.9 6.0 33 85-117 182-215 (455)
196 PRK09856 fructoselysine 3-epim 62.9 21 0.00045 32.2 6.2 52 44-108 14-65 (275)
197 TIGR01211 ELP3 histone acetylt 62.7 15 0.00033 37.1 5.6 63 46-116 206-268 (522)
198 cd05014 SIS_Kpsf KpsF-like pro 62.1 36 0.00078 26.6 6.8 59 50-108 20-79 (128)
199 PRK10605 N-ethylmaleimide redu 61.7 1E+02 0.0022 29.5 10.9 29 89-119 78-106 (362)
200 PRK08134 O-acetylhomoserine am 61.7 16 0.00035 35.9 5.5 82 21-112 100-188 (433)
201 PF01041 DegT_DnrJ_EryC1: DegT 61.5 17 0.00038 34.4 5.6 83 20-116 61-153 (363)
202 PRK05968 hypothetical protein; 61.0 32 0.00069 33.1 7.4 85 21-112 99-186 (389)
203 PF02836 Glyco_hydro_2_C: Glyc 60.7 30 0.00066 31.8 6.9 67 22-112 10-81 (298)
204 PRK09997 hydroxypyruvate isome 60.6 24 0.00052 31.7 6.1 64 45-108 17-103 (258)
205 COG1874 LacA Beta-galactosidas 60.4 14 0.00031 38.3 5.0 66 28-110 21-88 (673)
206 PLN00197 beta-amylase; Provisi 60.4 35 0.00076 34.4 7.5 65 41-118 125-192 (573)
207 cd04733 OYE_like_2_FMN Old yel 59.1 73 0.0016 30.0 9.3 29 89-119 81-109 (338)
208 PRK08064 cystathionine beta-ly 58.9 24 0.00053 33.9 6.2 85 21-112 89-177 (390)
209 PRK09249 coproporphyrinogen II 58.8 24 0.00051 34.8 6.2 33 85-117 182-215 (453)
210 PRK09593 arb 6-phospho-beta-gl 58.4 74 0.0016 31.8 9.6 64 41-110 71-134 (478)
211 TIGR03234 OH-pyruv-isom hydrox 58.3 33 0.00071 30.6 6.6 21 44-64 15-35 (254)
212 cd04724 Tryptophan_synthase_al 58.0 23 0.0005 31.8 5.5 24 90-113 116-139 (242)
213 PLN02705 beta-amylase 57.9 38 0.00083 34.6 7.3 65 41-118 266-333 (681)
214 PRK08114 cystathionine beta-ly 57.9 20 0.00044 34.8 5.4 84 21-112 98-188 (395)
215 KOG0259 Tyrosine aminotransfer 57.4 22 0.00047 34.4 5.3 78 42-120 136-249 (447)
216 TIGR02026 BchE magnesium-proto 57.1 20 0.00043 35.8 5.4 63 46-116 287-349 (497)
217 PRK09589 celA 6-phospho-beta-g 57.1 70 0.0015 31.9 9.1 64 41-110 65-128 (476)
218 PRK09852 cryptic 6-phospho-bet 56.4 24 0.00053 35.2 5.8 68 41-116 69-136 (474)
219 PLN02389 biotin synthase 56.3 35 0.00076 33.0 6.7 27 88-114 211-237 (379)
220 PRK10874 cysteine sulfinate de 56.3 30 0.00064 33.1 6.3 84 21-112 106-199 (401)
221 KOG3111 D-ribulose-5-phosphate 56.3 14 0.00031 32.2 3.5 23 40-62 14-36 (224)
222 PRK05613 O-acetylhomoserine am 56.0 22 0.00048 34.9 5.4 85 21-113 105-195 (437)
223 COG1809 (2R)-phospho-3-sulfola 56.0 27 0.00058 31.2 5.2 50 43-110 90-139 (258)
224 PRK07379 coproporphyrinogen II 55.6 22 0.00047 34.5 5.2 33 85-117 146-179 (400)
225 PF00266 Aminotran_5: Aminotra 55.6 21 0.00045 33.8 5.0 83 21-111 85-177 (371)
226 COG1242 Predicted Fe-S oxidore 54.5 53 0.0012 30.4 7.1 54 89-195 167-220 (312)
227 PF00701 DHDPS: Dihydrodipicol 54.4 36 0.00079 31.2 6.3 82 4-108 49-132 (289)
228 cd03413 CbiK_C Anaerobic cobal 54.4 28 0.0006 27.0 4.7 56 43-108 42-97 (103)
229 PRK08599 coproporphyrinogen II 54.4 28 0.0006 33.3 5.7 34 84-117 130-164 (377)
230 TIGR03392 FeS_syn_CsdA cystein 54.2 32 0.0007 32.8 6.2 62 51-112 126-196 (398)
231 PF01791 DeoC: DeoC/LacD famil 54.1 12 0.00027 33.3 3.0 25 89-113 111-135 (236)
232 PRK06294 coproporphyrinogen II 54.1 27 0.00058 33.5 5.5 64 46-117 103-167 (370)
233 cd06549 GH18_trifunctional GH1 54.1 29 0.00063 32.1 5.6 47 166-212 84-136 (298)
234 KOG0257 Kynurenine aminotransf 53.7 30 0.00065 33.7 5.6 88 21-119 114-221 (420)
235 PRK08195 4-hyroxy-2-oxovalerat 53.6 2E+02 0.0044 27.2 11.4 39 172-211 144-183 (337)
236 cd01335 Radical_SAM Radical SA 53.5 24 0.00052 29.1 4.6 65 46-117 88-152 (204)
237 PRK05799 coproporphyrinogen II 53.2 32 0.0007 32.8 5.9 33 85-117 130-163 (374)
238 smart00518 AP2Ec AP endonuclea 53.1 43 0.00092 30.2 6.5 53 44-108 11-63 (273)
239 cd00287 ribokinase_pfkB_like r 53.1 26 0.00056 29.4 4.8 50 51-113 45-94 (196)
240 TIGR00262 trpA tryptophan synt 53.0 45 0.00098 30.3 6.5 25 89-113 126-150 (256)
241 PLN02814 beta-glucosidase 53.0 74 0.0016 32.0 8.6 63 41-110 75-137 (504)
242 cd08560 GDPD_EcGlpQ_like_1 Gly 52.0 18 0.00038 34.7 3.8 19 92-110 280-298 (356)
243 PF07071 DUF1341: Protein of u 51.7 45 0.00098 29.3 5.9 44 45-106 137-180 (218)
244 PF02581 TMP-TENI: Thiamine mo 51.5 27 0.00058 29.7 4.6 47 49-108 108-154 (180)
245 PRK05994 O-acetylhomoserine am 51.1 33 0.00071 33.6 5.7 85 21-113 99-188 (427)
246 cd00945 Aldolase_Class_I Class 50.9 44 0.00095 28.1 5.9 57 42-113 64-123 (201)
247 cd04735 OYE_like_4_FMN Old yel 50.7 1E+02 0.0022 29.3 8.9 29 89-119 77-105 (353)
248 COG0826 Collagenase and relate 50.7 52 0.0011 31.4 6.8 52 47-109 17-68 (347)
249 TIGR03235 DNA_S_dndA cysteine 50.2 51 0.0011 30.8 6.7 72 44-115 100-182 (353)
250 cd02874 GH18_CFLE_spore_hydrol 50.1 36 0.00078 31.5 5.6 46 166-211 83-134 (313)
251 TIGR02666 moaA molybdenum cofa 50.1 52 0.0011 30.8 6.7 60 46-112 102-162 (334)
252 COG1640 MalQ 4-alpha-glucanotr 49.9 47 0.001 33.5 6.6 21 288-308 393-413 (520)
253 PRK08574 cystathionine gamma-s 49.9 23 0.0005 34.1 4.4 84 21-112 89-176 (385)
254 PRK02227 hypothetical protein; 49.8 29 0.00062 31.3 4.6 52 46-108 134-185 (238)
255 smart00052 EAL Putative diguan 49.3 18 0.0004 31.4 3.3 86 25-113 117-213 (241)
256 PLN02849 beta-glucosidase 49.2 91 0.002 31.4 8.5 63 41-110 77-139 (503)
257 cd05005 SIS_PHI Hexulose-6-pho 49.2 93 0.002 26.2 7.6 76 22-108 31-107 (179)
258 PRK05093 argD bifunctional N-s 49.2 51 0.0011 31.7 6.7 61 41-118 173-233 (403)
259 TIGR03551 F420_cofH 7,8-dideme 49.2 23 0.00051 33.5 4.2 34 82-115 171-204 (343)
260 PRK06702 O-acetylhomoserine am 49.1 40 0.00086 33.2 5.9 79 21-112 97-186 (432)
261 cd00954 NAL N-Acetylneuraminic 49.0 47 0.001 30.6 6.1 81 5-108 50-133 (288)
262 PRK13561 putative diguanylate 48.6 30 0.00064 35.6 5.2 85 26-113 519-614 (651)
263 smart00729 Elp3 Elongator prot 48.1 49 0.0011 27.6 5.8 29 87-115 133-162 (216)
264 TIGR03402 FeS_nifS cysteine de 47.9 55 0.0012 30.9 6.6 69 43-112 97-175 (379)
265 TIGR03127 RuMP_HxlB 6-phospho 47.8 85 0.0018 26.3 7.1 56 49-108 49-104 (179)
266 PF01261 AP_endonuc_2: Xylose 47.6 8.5 0.00019 32.7 0.9 45 49-108 1-45 (213)
267 COG3345 GalA Alpha-galactosida 47.4 63 0.0014 32.9 6.8 165 12-196 279-453 (687)
268 PRK15108 biotin synthase; Prov 47.4 65 0.0014 30.6 6.9 28 87-114 168-195 (345)
269 TIGR03470 HpnH hopanoid biosyn 47.0 56 0.0012 30.6 6.3 28 41-68 176-203 (318)
270 cd01299 Met_dep_hydrolase_A Me 46.9 94 0.002 28.8 8.0 63 41-110 118-180 (342)
271 PF15640 Tox-MPTase4: Metallop 46.9 20 0.00044 28.8 2.8 27 83-109 15-41 (132)
272 PRK13361 molybdenum cofactor b 46.7 55 0.0012 30.7 6.3 60 46-113 104-164 (329)
273 cd02930 DCR_FMN 2,4-dienoyl-Co 46.6 2.6E+02 0.0057 26.5 11.6 71 43-118 33-103 (353)
274 PLN02855 Bifunctional selenocy 46.5 53 0.0011 31.7 6.3 32 81-112 181-212 (424)
275 PRK09028 cystathionine beta-ly 46.3 28 0.0006 33.8 4.3 30 84-113 157-186 (394)
276 PRK13125 trpA tryptophan synth 46.2 60 0.0013 29.1 6.2 24 89-112 115-138 (244)
277 PRK12595 bifunctional 3-deoxy- 46.1 79 0.0017 30.4 7.3 60 41-110 130-189 (360)
278 cd04795 SIS SIS domain. SIS (S 45.6 23 0.0005 25.5 2.9 65 44-108 11-79 (87)
279 TIGR03699 mena_SCO4550 menaqui 45.5 30 0.00065 32.6 4.3 32 83-114 174-205 (340)
280 PTZ00376 aspartate aminotransf 45.5 75 0.0016 30.5 7.2 30 88-117 194-223 (404)
281 PRK13209 L-xylulose 5-phosphat 45.4 51 0.0011 29.8 5.7 54 44-108 22-75 (283)
282 PRK00164 moaA molybdenum cofac 45.4 65 0.0014 30.1 6.6 59 46-112 108-167 (331)
283 cd07938 DRE_TIM_HMGL 3-hydroxy 45.3 1.4E+02 0.0031 27.3 8.7 40 171-211 148-188 (274)
284 PRK05692 hydroxymethylglutaryl 45.2 1.3E+02 0.0029 27.7 8.5 39 172-211 155-194 (287)
285 PF00704 Glyco_hydro_18: Glyco 45.2 43 0.00093 31.0 5.3 45 167-211 96-150 (343)
286 COG0329 DapA Dihydrodipicolina 44.9 43 0.00092 31.2 5.2 92 5-118 53-145 (299)
287 PRK13238 tnaA tryptophanase/L- 44.8 52 0.0011 32.6 6.0 23 88-110 196-218 (460)
288 cd05008 SIS_GlmS_GlmD_1 SIS (S 44.3 40 0.00087 26.3 4.3 60 48-108 17-78 (126)
289 PLN02998 beta-glucosidase 44.2 99 0.0022 31.1 7.9 63 41-110 80-142 (497)
290 cd00019 AP2Ec AP endonuclease 44.0 75 0.0016 28.7 6.6 53 44-108 11-64 (279)
291 PF00155 Aminotran_1_2: Aminot 43.9 45 0.00097 31.1 5.3 64 41-118 131-196 (363)
292 PRK07259 dihydroorotate dehydr 43.9 1.4E+02 0.003 27.5 8.4 70 26-111 93-165 (301)
293 COG0134 TrpC Indole-3-glycerol 43.9 28 0.00061 31.7 3.6 23 88-110 141-163 (254)
294 PRK08247 cystathionine gamma-s 43.8 29 0.00062 33.1 3.9 27 86-112 149-175 (366)
295 cd00615 Orn_deC_like Ornithine 43.7 17 0.00036 33.4 2.2 26 86-111 166-191 (294)
296 PRK00854 rocD ornithine--oxo-a 43.6 69 0.0015 30.6 6.6 60 41-117 176-235 (401)
297 PF12996 DUF3880: DUF based on 43.6 24 0.00053 25.8 2.7 24 46-69 27-50 (79)
298 cd06548 GH18_chitinase The GH1 43.4 33 0.00071 32.1 4.2 30 166-195 105-134 (322)
299 PLN02591 tryptophan synthase 43.1 69 0.0015 29.1 6.1 43 44-108 94-136 (250)
300 PRK03170 dihydrodipicolinate s 43.0 57 0.0012 30.0 5.7 35 26-66 72-106 (292)
301 TIGR01324 cysta_beta_ly_B cyst 42.9 34 0.00073 32.9 4.3 32 82-113 144-175 (377)
302 PRK13398 3-deoxy-7-phosphohept 42.8 1E+02 0.0022 28.2 7.2 60 41-110 39-98 (266)
303 PF13407 Peripla_BP_4: Peripla 42.7 52 0.0011 28.8 5.3 47 40-108 39-85 (257)
304 TIGR01977 am_tr_V_EF2568 cyste 42.7 75 0.0016 29.8 6.6 32 82-113 146-177 (376)
305 PRK09058 coproporphyrinogen II 42.6 46 0.001 32.8 5.3 32 86-117 195-227 (449)
306 PRK00278 trpC indole-3-glycero 42.2 31 0.00067 31.4 3.7 23 88-110 145-167 (260)
307 TIGR01212 radical SAM protein, 42.2 55 0.0012 30.5 5.4 27 88-114 161-187 (302)
308 PRK09856 fructoselysine 3-epim 41.9 1.2E+02 0.0025 27.2 7.5 61 41-110 88-149 (275)
309 COG1082 IolE Sugar phosphate i 41.8 57 0.0012 29.1 5.4 22 43-64 15-36 (274)
310 cd02876 GH18_SI-CLP Stabilin-1 41.8 33 0.00071 32.0 3.9 46 166-211 88-144 (318)
311 PRK12581 oxaloacetate decarbox 41.7 1.4E+02 0.003 29.8 8.4 41 170-211 161-202 (468)
312 TIGR00423 radical SAM domain p 41.6 42 0.00091 31.2 4.6 32 84-115 139-170 (309)
313 cd00609 AAT_like Aspartate ami 41.1 28 0.00061 31.8 3.4 27 88-114 150-176 (350)
314 TIGR01814 kynureninase kynuren 41.0 23 0.00049 34.1 2.8 31 81-111 179-209 (406)
315 PLN02808 alpha-galactosidase 40.8 44 0.00095 32.4 4.6 61 41-108 47-115 (386)
316 cd00384 ALAD_PBGS Porphobilino 40.7 1.4E+02 0.0031 27.9 7.8 81 25-114 21-115 (314)
317 smart00636 Glyco_18 Glycosyl h 40.7 37 0.0008 31.7 4.1 46 166-211 87-140 (334)
318 TIGR02109 PQQ_syn_pqqE coenzym 40.5 52 0.0011 31.1 5.2 28 87-114 129-156 (358)
319 COG1104 NifS Cysteine sulfinat 40.5 53 0.0011 31.8 5.1 100 4-111 67-179 (386)
320 smart00733 Mterf Mitochondrial 40.4 24 0.00051 19.7 1.8 17 42-58 15-31 (31)
321 cd02879 GH18_plant_chitinase_c 40.3 34 0.00074 31.7 3.8 46 166-211 88-140 (299)
322 PRK06582 coproporphyrinogen II 40.2 69 0.0015 31.0 6.0 63 47-117 112-174 (390)
323 PLN03231 putative alpha-galact 40.2 3.5E+02 0.0075 26.0 11.0 34 162-196 153-186 (357)
324 cd03412 CbiK_N Anaerobic cobal 40.1 44 0.00095 26.8 3.9 60 42-101 55-125 (127)
325 PRK10060 RNase II stability mo 40.1 34 0.00074 35.4 4.1 85 26-113 526-621 (663)
326 COG2342 Predicted extracellula 40.0 34 0.00073 31.6 3.5 75 22-108 111-191 (300)
327 PRK09057 coproporphyrinogen II 40.0 51 0.0011 31.7 5.0 63 47-117 105-167 (380)
328 PRK13384 delta-aminolevulinic 39.9 1.4E+02 0.0031 28.1 7.6 81 25-114 31-125 (322)
329 cd06452 SepCysS Sep-tRNA:Cys-t 39.9 24 0.00053 33.2 2.8 31 83-113 149-179 (361)
330 PRK13111 trpA tryptophan synth 39.9 74 0.0016 29.0 5.8 48 44-113 105-152 (258)
331 PRK07050 cystathionine beta-ly 39.8 38 0.00083 32.7 4.2 30 85-114 162-191 (394)
332 cd06454 KBL_like KBL_like; thi 39.7 26 0.00057 32.4 3.0 28 85-112 144-171 (349)
333 cd00408 DHDPS-like Dihydrodipi 39.7 80 0.0017 28.6 6.1 26 41-66 77-102 (281)
334 PRK14457 ribosomal RNA large s 39.6 1.3E+02 0.0028 28.7 7.6 72 24-108 253-324 (345)
335 PRK11829 biofilm formation reg 39.4 45 0.00099 34.2 4.9 86 25-113 523-619 (660)
336 cd05013 SIS_RpiR RpiR-like pro 39.4 65 0.0014 25.0 4.9 77 26-108 15-92 (139)
337 PRK05367 glycine dehydrogenase 39.2 49 0.0011 36.0 5.2 80 25-113 166-245 (954)
338 cd04824 eu_ALAD_PBGS_cysteine_ 39.2 1.2E+02 0.0026 28.5 7.0 81 25-114 21-118 (320)
339 cd07944 DRE_TIM_HOA_like 4-hyd 39.2 3E+02 0.0065 25.0 11.4 70 88-211 107-177 (266)
340 cd00950 DHDPS Dihydrodipicolin 39.0 66 0.0014 29.3 5.4 81 5-108 49-131 (284)
341 PRK09331 Sep-tRNA:Cys-tRNA syn 39.0 31 0.00067 33.0 3.4 32 82-113 167-198 (387)
342 PRK08573 phosphomethylpyrimidi 39.0 64 0.0014 31.8 5.6 75 42-116 16-110 (448)
343 PRK08898 coproporphyrinogen II 38.7 49 0.0011 32.0 4.7 63 47-117 123-185 (394)
344 TIGR03586 PseI pseudaminic aci 38.5 1E+02 0.0022 29.2 6.6 71 39-109 13-96 (327)
345 PRK05301 pyrroloquinoline quin 38.2 54 0.0012 31.3 4.9 28 87-114 138-165 (378)
346 PTZ00125 ornithine aminotransf 38.2 95 0.0021 29.5 6.6 61 41-117 166-226 (400)
347 PRK14340 (dimethylallyl)adenos 38.1 69 0.0015 31.6 5.7 31 88-118 281-313 (445)
348 COG2200 Rtn c-di-GMP phosphodi 38.0 63 0.0014 29.1 5.1 79 26-112 121-215 (256)
349 PRK15029 arginine decarboxylas 38.0 74 0.0016 33.7 6.1 28 84-111 322-349 (755)
350 PRK02627 acetylornithine amino 37.9 94 0.002 29.4 6.5 60 41-117 171-230 (396)
351 COG2873 MET17 O-acetylhomoseri 37.9 33 0.0007 33.1 3.2 61 52-113 122-187 (426)
352 cd01494 AAT_I Aspartate aminot 37.9 28 0.0006 28.0 2.5 30 87-116 106-135 (170)
353 COG2179 Predicted hydrolase of 37.6 1.2E+02 0.0025 26.1 6.1 49 48-108 19-67 (175)
354 cd00953 KDG_aldolase KDG (2-ke 37.5 1.1E+02 0.0024 28.0 6.7 80 4-108 47-126 (279)
355 cd04740 DHOD_1B_like Dihydroor 37.4 2.4E+02 0.0053 25.7 9.0 71 25-111 90-162 (296)
356 PRK14455 ribosomal RNA large s 37.4 1.2E+02 0.0026 29.0 7.0 72 24-108 260-331 (356)
357 COG1105 FruK Fructose-1-phosph 37.3 45 0.00099 31.3 4.0 23 88-110 144-166 (310)
358 PRK11059 regulatory protein Cs 37.2 48 0.001 34.1 4.7 86 25-113 517-613 (640)
359 PRK04147 N-acetylneuraminate l 37.1 88 0.0019 28.8 6.0 57 4-66 52-109 (293)
360 PF04914 DltD_C: DltD C-termin 37.0 45 0.00099 27.1 3.5 55 90-187 36-90 (130)
361 TIGR01140 L_thr_O3P_dcar L-thr 36.8 37 0.00079 31.6 3.4 29 88-116 143-171 (330)
362 PRK11359 cyclic-di-GMP phospho 36.7 39 0.00085 35.3 4.0 86 25-113 662-758 (799)
363 COG3033 TnaA Tryptophanase [Am 36.7 93 0.002 30.1 5.9 57 41-110 170-226 (471)
364 cd01948 EAL EAL domain. This d 36.6 43 0.00093 29.0 3.7 86 25-113 116-212 (240)
365 cd02872 GH18_chitolectin_chito 36.6 41 0.00089 31.9 3.8 46 166-211 92-148 (362)
366 PLN02428 lipoic acid synthase 36.5 1.9E+02 0.0042 27.6 8.2 60 41-108 260-319 (349)
367 cd00614 CGS_like CGS_like: Cys 36.4 31 0.00068 32.8 2.9 28 85-112 137-164 (369)
368 PRK08255 salicylyl-CoA 5-hydro 36.3 2.1E+02 0.0045 30.3 9.3 29 89-119 474-503 (765)
369 PLN02509 cystathionine beta-ly 36.3 48 0.001 32.9 4.3 31 82-112 226-256 (464)
370 PF00232 Glyco_hydro_1: Glycos 36.1 41 0.00088 33.2 3.8 64 41-110 56-119 (455)
371 PRK09257 aromatic amino acid a 36.0 1.4E+02 0.0031 28.4 7.5 30 88-117 190-219 (396)
372 COG1891 Uncharacterized protei 36.0 18 0.00038 31.2 1.0 21 88-108 165-185 (235)
373 PRK09989 hypothetical protein; 35.9 93 0.002 27.8 5.8 43 44-108 16-58 (258)
374 TIGR00587 nfo apurinic endonuc 35.9 1.3E+02 0.0029 27.3 6.9 70 41-110 86-178 (274)
375 cd06502 TA_like Low-specificit 35.8 36 0.00078 31.4 3.2 24 88-111 144-167 (338)
376 COG3661 AguA Alpha-glucuronida 35.8 1.2E+02 0.0027 29.9 6.7 71 31-111 172-242 (684)
377 PF01261 AP_endonuc_2: Xylose 35.7 96 0.0021 26.0 5.7 61 42-109 70-131 (213)
378 COG1168 MalY Bifunctional PLP- 35.5 41 0.00089 32.4 3.4 23 88-110 176-198 (388)
379 TIGR03700 mena_SCO4494 putativ 35.2 62 0.0013 30.7 4.7 34 81-114 179-212 (351)
380 cd03409 Chelatase_Class_II Cla 35.0 40 0.00086 25.2 2.8 27 43-69 45-71 (101)
381 cd00952 CHBPH_aldolase Trans-o 35.0 1.2E+02 0.0027 28.2 6.6 57 4-66 56-113 (309)
382 cd05017 SIS_PGI_PMI_1 The memb 35.0 41 0.0009 26.3 3.0 56 50-108 19-75 (119)
383 COG1103 Archaea-specific pyrid 34.9 34 0.00075 31.7 2.7 32 79-110 162-193 (382)
384 PRK08445 hypothetical protein; 34.8 58 0.0013 31.0 4.5 34 82-115 174-207 (348)
385 TIGR02539 SepCysS Sep-tRNA:Cys 34.8 37 0.0008 32.2 3.1 32 82-113 155-186 (370)
386 PF07021 MetW: Methionine bios 34.7 1E+02 0.0022 26.9 5.5 68 45-117 91-173 (193)
387 TIGR00707 argD acetylornithine 34.6 1.2E+02 0.0026 28.5 6.6 60 41-117 159-218 (379)
388 PF04476 DUF556: Protein of un 34.6 83 0.0018 28.3 5.0 50 48-108 136-185 (235)
389 PRK07269 cystathionine gamma-s 34.5 36 0.00078 32.5 3.0 27 86-112 149-175 (364)
390 PRK13957 indole-3-glycerol-pho 34.1 48 0.001 30.1 3.5 23 88-110 136-158 (247)
391 KOG2584 Dihydroorotase and rel 34.0 46 0.001 32.7 3.5 98 88-208 84-185 (522)
392 cd02878 GH18_zymocin_alpha Zym 33.9 49 0.0011 31.3 3.8 29 167-195 88-116 (345)
393 PRK10150 beta-D-glucuronidase; 33.8 1.5E+02 0.0032 30.4 7.6 68 21-112 286-358 (604)
394 COG0113 HemB Delta-aminolevuli 33.7 1.5E+02 0.0033 27.8 6.7 77 25-113 31-126 (330)
395 PRK14453 chloramphenicol/florf 33.6 1.9E+02 0.004 27.7 7.6 59 41-108 262-324 (347)
396 cd08559 GDPD_periplasmic_GlpQ_ 33.2 74 0.0016 29.4 4.8 16 93-108 246-261 (296)
397 PLN02231 alanine transaminase 33.0 1.5E+02 0.0033 30.0 7.3 63 41-117 254-318 (534)
398 PRK13397 3-deoxy-7-phosphohept 32.9 2.2E+02 0.0047 25.9 7.6 59 41-110 27-86 (250)
399 PRK09064 5-aminolevulinate syn 32.9 74 0.0016 30.4 4.9 27 87-113 192-218 (407)
400 COG3934 Endo-beta-mannanase [C 32.8 1.1E+02 0.0023 30.7 5.9 71 43-120 26-99 (587)
401 cd00958 DhnA Class I fructose- 32.8 47 0.001 29.4 3.3 21 90-110 109-129 (235)
402 PTZ00413 lipoate synthase; Pro 32.8 1.7E+02 0.0038 28.4 7.2 61 41-109 308-368 (398)
403 PF09445 Methyltransf_15: RNA 32.7 1.1E+02 0.0024 25.9 5.3 67 41-113 56-122 (163)
404 cd00617 Tnase_like Tryptophana 32.6 49 0.0011 32.5 3.7 24 88-111 171-194 (431)
405 PRK09997 hydroxypyruvate isome 32.6 67 0.0015 28.7 4.3 65 41-114 83-147 (258)
406 PRK07811 cystathionine gamma-s 32.4 40 0.00086 32.4 3.0 29 85-113 158-186 (388)
407 PF00490 ALAD: Delta-aminolevu 32.3 95 0.0021 29.3 5.2 81 25-114 27-123 (324)
408 TIGR01037 pyrD_sub1_fam dihydr 32.3 2.9E+02 0.0062 25.3 8.6 71 26-111 92-165 (300)
409 PF01565 FAD_binding_4: FAD bi 32.3 59 0.0013 25.9 3.6 21 88-108 9-29 (139)
410 PRK05958 8-amino-7-oxononanoat 32.2 38 0.00082 31.8 2.7 28 85-112 180-207 (385)
411 cd07491 Peptidases_S8_7 Peptid 32.1 2.8E+02 0.006 24.8 8.3 69 27-108 69-141 (247)
412 PRK09283 delta-aminolevulinic 32.0 3.1E+02 0.0067 25.9 8.5 81 25-114 29-123 (323)
413 PRK07568 aspartate aminotransf 32.0 50 0.0011 31.4 3.6 29 88-116 180-208 (397)
414 cd03320 OSBS o-Succinylbenzoat 32.0 1.4E+02 0.003 27.0 6.3 68 42-109 140-233 (263)
415 PRK07812 O-acetylhomoserine am 32.0 39 0.00085 33.2 2.9 83 21-112 105-194 (436)
416 PF00289 CPSase_L_chain: Carba 31.9 41 0.00088 26.4 2.4 63 45-107 14-103 (110)
417 PRK06777 4-aminobutyrate amino 31.9 1.1E+02 0.0024 29.7 6.0 50 55-117 197-246 (421)
418 PF00218 IGPS: Indole-3-glycer 31.9 54 0.0012 29.9 3.5 23 88-110 143-165 (254)
419 PRK00125 pyrF orotidine 5'-pho 31.9 47 0.001 30.7 3.2 28 89-116 72-99 (278)
420 PLN02460 indole-3-glycerol-pho 31.8 55 0.0012 31.1 3.7 23 88-110 215-237 (338)
421 COG3469 Chitinase [Carbohydrat 31.8 1.8E+02 0.0039 26.7 6.7 31 79-109 74-104 (332)
422 PLN02757 sirohydrochlorine fer 31.7 1.3E+02 0.0028 25.1 5.6 29 44-72 59-87 (154)
423 TIGR02127 pyrF_sub2 orotidine 31.7 52 0.0011 30.1 3.4 33 84-116 65-99 (261)
424 TIGR01329 cysta_beta_ly_E cyst 31.6 41 0.00088 32.3 2.9 84 21-112 82-170 (378)
425 PRK05926 hypothetical protein; 31.6 56 0.0012 31.4 3.8 90 24-116 115-233 (370)
426 PRK12381 bifunctional succinyl 31.5 1.4E+02 0.0029 28.8 6.5 60 41-117 172-231 (406)
427 PRK11145 pflA pyruvate formate 31.4 1.1E+02 0.0024 27.1 5.6 64 43-107 179-245 (246)
428 TIGR00676 fadh2 5,10-methylene 31.2 1.9E+02 0.0041 26.4 7.1 71 36-108 7-91 (272)
429 PRK14330 (dimethylallyl)adenos 31.2 92 0.002 30.5 5.3 31 88-118 273-305 (434)
430 TIGR01325 O_suc_HS_sulf O-succ 31.1 41 0.00089 32.2 2.8 31 83-113 149-179 (380)
431 cd00564 TMP_TenI Thiamine mono 31.0 1.7E+02 0.0037 24.3 6.4 50 48-110 107-157 (196)
432 COG1489 SfsA DNA-binding prote 30.9 99 0.0022 27.8 4.9 54 46-108 157-210 (235)
433 PRK09776 putative diguanylate 30.8 63 0.0014 35.1 4.5 80 25-112 958-1053(1092)
434 PLN00145 tyrosine/nicotianamin 30.8 54 0.0012 32.0 3.6 30 88-117 208-237 (430)
435 PRK08960 hypothetical protein; 30.7 58 0.0013 31.0 3.8 29 88-116 183-211 (387)
436 cd07940 DRE_TIM_IPMS 2-isoprop 30.7 3.4E+02 0.0074 24.5 8.7 39 172-211 143-182 (268)
437 COG1441 MenC O-succinylbenzoat 30.7 50 0.0011 29.8 2.9 24 86-109 240-263 (321)
438 PRK06939 2-amino-3-ketobutyrat 30.6 44 0.00095 31.6 2.9 30 84-113 185-214 (397)
439 PRK00923 sirohydrochlorin coba 30.6 85 0.0019 24.8 4.2 28 43-70 46-73 (126)
440 TIGR00674 dapA dihydrodipicoli 30.5 1.2E+02 0.0026 27.7 5.7 26 41-66 78-103 (285)
441 PLN02746 hydroxymethylglutaryl 30.5 3.1E+02 0.0068 26.2 8.6 39 172-211 197-236 (347)
442 TIGR00858 bioF 8-amino-7-oxono 30.4 37 0.00081 31.4 2.4 28 86-113 159-186 (360)
443 PRK07495 4-aminobutyrate amino 30.4 1.1E+02 0.0023 30.0 5.6 48 56-116 198-245 (425)
444 cd04722 TIM_phosphate_binding 30.4 2.5E+02 0.0055 22.9 7.4 64 26-113 59-124 (200)
445 PRK06108 aspartate aminotransf 30.3 55 0.0012 30.8 3.5 30 88-117 176-205 (382)
446 cd04886 ACT_ThrD-II-like C-ter 30.3 1.4E+02 0.0029 20.1 4.8 60 45-107 12-72 (73)
447 PF01276 OKR_DC_1: Orn/Lys/Arg 30.2 19 0.00041 35.3 0.3 26 85-110 179-204 (417)
448 TIGR01437 selA_rel uncharacter 30.1 39 0.00084 32.2 2.4 28 86-113 162-189 (363)
449 COG0436 Aspartate/tyrosine/aro 29.9 59 0.0013 31.5 3.7 32 88-119 181-212 (393)
450 PF10096 DUF2334: Uncharacteri 29.9 2.6E+02 0.0057 25.0 7.7 66 35-109 8-74 (243)
451 cd05710 SIS_1 A subgroup of th 29.7 58 0.0013 25.5 3.1 31 78-108 49-79 (120)
452 COG0626 MetC Cystathionine bet 29.7 63 0.0014 31.4 3.8 61 53-113 124-189 (396)
453 cd06450 DOPA_deC_like DOPA dec 29.6 42 0.00091 31.1 2.5 32 83-114 158-189 (345)
454 PLN02721 threonine aldolase 29.6 59 0.0013 30.1 3.6 24 89-112 157-180 (353)
455 cd03416 CbiX_SirB_N Sirohydroc 29.3 50 0.0011 24.9 2.5 28 43-70 44-71 (101)
456 TIGR03581 EF_0839 conserved hy 29.3 1.6E+02 0.0035 26.3 5.8 59 44-108 136-207 (236)
457 TIGR00474 selA seryl-tRNA(sec) 29.0 39 0.00084 33.5 2.3 23 88-110 230-252 (454)
458 PRK05764 aspartate aminotransf 29.0 60 0.0013 30.8 3.5 28 88-115 182-209 (393)
459 smart00518 AP2Ec AP endonuclea 29.0 2.1E+02 0.0045 25.6 7.0 24 41-64 82-105 (273)
460 TIGR01265 tyr_nico_aTase tyros 29.0 65 0.0014 30.9 3.8 30 88-117 187-216 (403)
461 PRK07777 aminotransferase; Val 29.0 63 0.0014 30.7 3.7 29 88-116 177-205 (387)
462 PRK06225 aspartate aminotransf 28.8 61 0.0013 30.7 3.6 26 88-113 175-200 (380)
463 cd02873 GH18_IDGF The IDGF's ( 28.7 65 0.0014 31.4 3.8 28 166-193 101-128 (413)
464 cd00019 AP2Ec AP endonuclease 28.6 1.6E+02 0.0034 26.6 6.1 65 41-114 83-147 (279)
465 TIGR01976 am_tr_V_VC1184 cyste 28.6 50 0.0011 31.3 2.9 31 81-111 164-194 (397)
466 TIGR03301 PhnW-AepZ 2-aminoeth 28.6 67 0.0015 29.6 3.8 31 82-112 134-164 (355)
467 cd02803 OYE_like_FMN_family Ol 28.6 2.6E+02 0.0056 25.9 7.7 61 46-112 144-217 (327)
468 TIGR01822 2am3keto_CoA 2-amino 28.6 52 0.0011 31.2 3.0 27 86-112 183-209 (393)
469 PLN00175 aminotransferase fami 28.6 65 0.0014 31.1 3.8 30 88-117 205-234 (413)
470 PRK13520 L-tyrosine decarboxyl 28.5 40 0.00087 31.5 2.2 30 84-113 162-191 (371)
471 TIGR00666 PBP4 D-alanyl-D-alan 28.5 1.2E+02 0.0027 28.7 5.5 76 42-118 19-99 (345)
472 TIGR03569 NeuB_NnaB N-acetylne 28.4 1.6E+02 0.0034 28.0 6.1 71 39-109 12-95 (329)
473 cd01171 YXKO-related B.subtili 28.2 47 0.001 29.6 2.5 34 78-111 79-112 (254)
474 PRK13237 tyrosine phenol-lyase 28.2 63 0.0014 32.1 3.5 23 89-111 197-219 (460)
475 TIGR00044 pyridoxal phosphate 28.1 87 0.0019 27.8 4.2 70 40-112 57-129 (229)
476 PRK07324 transaminase; Validat 28.1 75 0.0016 30.1 4.0 29 88-116 171-199 (373)
477 PRK08776 cystathionine gamma-s 27.8 53 0.0012 31.9 3.0 29 85-113 157-185 (405)
478 PTZ00242 protein tyrosine phos 27.8 1.9E+02 0.0041 24.3 6.0 66 43-108 27-103 (166)
479 PF00202 Aminotran_3: Aminotra 27.7 1.3E+02 0.0028 28.3 5.6 63 45-120 166-228 (339)
480 cd00616 AHBA_syn 3-amino-5-hyd 27.7 45 0.00098 30.9 2.4 30 84-113 114-143 (352)
481 cd07945 DRE_TIM_CMS Leptospira 27.7 4.8E+02 0.01 23.9 9.8 39 172-211 147-186 (280)
482 PRK00955 hypothetical protein; 27.7 1.4E+02 0.0029 31.0 5.9 71 27-98 479-553 (620)
483 TIGR02326 transamin_PhnW 2-ami 27.6 52 0.0011 30.9 2.8 31 81-111 137-167 (363)
484 cd06453 SufS_like Cysteine des 27.6 49 0.0011 31.0 2.7 30 83-112 149-178 (373)
485 PRK11543 gutQ D-arabinose 5-ph 27.6 75 0.0016 29.4 3.9 60 49-108 61-121 (321)
486 PLN02692 alpha-galactosidase 27.6 1.3E+02 0.0027 29.6 5.4 61 41-108 71-139 (412)
487 PRK15481 transcriptional regul 27.6 1.9E+02 0.0042 27.9 6.9 48 56-116 211-259 (431)
488 PRK11658 UDP-4-amino-4-deoxy-L 27.5 45 0.00097 31.9 2.4 30 85-114 130-159 (379)
489 PRK07671 cystathionine beta-ly 27.4 58 0.0012 31.2 3.1 30 84-113 145-174 (377)
490 PLN02656 tyrosine transaminase 27.3 63 0.0014 31.1 3.4 30 88-117 187-216 (409)
491 cd03414 CbiX_SirB_C Sirohydroc 27.3 55 0.0012 25.4 2.5 26 44-69 46-71 (117)
492 PRK09989 hypothetical protein; 27.3 1.1E+02 0.0025 27.2 4.9 61 42-110 84-144 (258)
493 COG0320 LipA Lipoate synthase 27.2 2.3E+02 0.0049 26.4 6.6 81 13-108 205-285 (306)
494 PRK08175 aminotransferase; Val 27.2 66 0.0014 30.7 3.5 29 88-116 182-210 (395)
495 PLN02607 1-aminocyclopropane-1 27.2 2.5E+02 0.0055 27.6 7.6 61 41-115 183-245 (447)
496 PF12905 Glyco_hydro_101: Endo 27.1 64 0.0014 31.5 3.2 100 12-113 16-118 (425)
497 PF03932 CutC: CutC family; I 27.1 2.7E+02 0.0058 24.4 6.9 50 41-108 70-119 (201)
498 PRK07582 cystathionine gamma-l 27.0 61 0.0013 30.9 3.2 27 86-112 145-171 (366)
499 TIGR01579 MiaB-like-C MiaB-lik 26.9 1.4E+02 0.0031 28.9 5.8 31 88-118 271-303 (414)
500 cd00378 SHMT Serine-glycine hy 26.9 51 0.0011 31.4 2.7 28 84-111 170-197 (402)
No 1
>PLN02361 alpha-amylase
Probab=100.00 E-value=1.8e-64 Score=482.43 Aligned_cols=291 Identities=86% Similarity=1.459 Sum_probs=256.3
Q ss_pred ccCCceeEEEEeeCCCCCCchHHHHHHhhhHHHHcCCCEEEeCCCCCCCCCCCCCcccCCCcCCCCCCHHHHHHHHHHHh
Q 021281 21 IRNGREILFQGFNWESCKHDWWRNLERKVPDISKSGFTSVWLPPATHSFAPEGYLPQNLYSLNSSYGSEHLLKALLHKMK 100 (314)
Q Consensus 21 ~~~~~~~i~q~F~w~~~~~g~~~gi~~~ldyl~~lG~~~I~l~Pi~~~~~~~gY~~~d~~~id~~~Gt~~df~~lv~~ah 100 (314)
...|++||||+|+|++++..+|++|+++|+||++||||+|||+|++++.++|||+|.|||+|+|+|||++||++||++||
T Consensus 7 ~~~~~~v~lQ~F~W~~~~~~~w~~i~~kl~~l~~lG~t~iwl~P~~~~~~~~GY~~~d~y~~~~~~Gt~~el~~li~~~h 86 (401)
T PLN02361 7 IRNGREILLQAFNWESHKHDWWRNLEGKVPDLAKSGFTSAWLPPPSQSLAPEGYLPQNLYSLNSAYGSEHLLKSLLRKMK 86 (401)
T ss_pred hcCCCcEEEEEEeccCCccHHHHHHHHHHHHHHHcCCCEEEeCCCCcCCCCCCCCcccccccCcccCCHHHHHHHHHHHH
Confidence 44568999999999998777999999999999999999999999999999999999999999999999999999999999
Q ss_pred hCCCEEEEeeeeccccCCCCCCCCcCcCCCCCCCCCCCCCcccCCCCCccccCCCCCCCCCCCCCCCHHHHHHHHHHHHH
Q 021281 101 QHKVRAMADIVINHRVGTTQGHGGKYNRYDGIPLSWDEHAVTSCTGGLGNGSTGDNFHGVPNIDHTQHFVRKDIIAWLRW 180 (314)
Q Consensus 101 ~~Gi~VilD~V~NH~~~~~~~~~~~y~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~~p~v~~~l~~~~~~ 180 (314)
++||+||+|+|+||++...++..++|..|.+.+.+|.+..++....+.++...+..+.++||||++||+||+++++++++
T Consensus 87 ~~gi~vi~D~V~NH~~g~~~~~~~~y~~~~g~~~~wd~~~~~~~~~g~~~~~~~~~~~~lpDLd~~np~Vr~~l~~~~~w 166 (401)
T PLN02361 87 QYNVRAMADIVINHRVGTTQGHGGMYNRYDGIPLPWDEHAVTSCTGGLGNRSTGDNFNGVPNIDHTQHFVRKDIIGWLIW 166 (401)
T ss_pred HcCCEEEEEEccccccCCCCCCCCCcccCCCCcCCCCccccccccCCCCCccCCCCCccCCccCCCCHHHHHHHHHHHHH
Confidence 99999999999999987766677788877654456766554443334444455667889999999999999999999998
Q ss_pred HHHhCCCCEEEeccCCCCCHHHHHHHHHhhCCCeEEEcccCCCCCC--CCCCCCccchhHHHHhhhhccCCCcceeeChh
Q 021281 181 LRNTVGFQDFRFDFARGYSAKYVKEYIEGARPIFSVGEYWDSCNYN--SHGLDYNQDSHRQRIINWIDGTGQLSAAFDFT 258 (314)
Q Consensus 181 w~~~~gvDGfRlDaa~~i~~~f~~~~~~~~~~~~~~gE~~~~~~y~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~df~ 258 (314)
|++++||||||+|+|||++.+||++++++++|.|+|||+|++..+. ++.++|.++++++.+..|++.+++..++|||+
T Consensus 167 l~~~~GiDGfRlDavk~~~~~f~~~~~~~~~p~f~VGE~w~~~~~~~~d~~~~y~~~~~~~~l~~~~~~~~~~~~~fDF~ 246 (401)
T PLN02361 167 LRNDVGFQDFRFDFAKGYSAKFVKEYIEAAKPLFSVGEYWDSCNYSGPDYRLDYNQDSHRQRIVNWIDGTGGLSAAFDFT 246 (401)
T ss_pred HHhcCCCCEEEEeccccCCHHHHHHHHHhhCCeEEEEEEecCCCcCCcccccchhhhhHHHHHHHHHHhcCCcceeecHH
Confidence 8867999999999999999999999999999999999999985543 45588888888899999999887789999999
Q ss_pred hHHHHHHHHccchhHHHhhhCCCCCCccccCCceeeccCCCCCCCCCCCCCCC
Q 021281 259 TKGILQEAVKGQFWRLRDAQGKPPGVMGWWPSRAVTFLDNHDTGSTQVPHDYR 311 (314)
Q Consensus 259 l~~~l~~~~~g~~~~l~~~~~~~~~~~~~~p~~~v~F~~NHD~~R~~~~~~~~ 311 (314)
+...+++++.++.+++.+..++++++++..|.++||||+||||+|.+++||.+
T Consensus 247 l~~~l~~a~~~~~~~l~~~~~~~~~~~~~~p~~aVTFvdNHDt~r~~~~~~~~ 299 (401)
T PLN02361 247 TKGILQEAVKGQWWRLRDAQGKPPGVMGWWPSRAVTFIDNHDTGSTQAHWPFP 299 (401)
T ss_pred HHHHHHHHHhhhHHHHhhhhcCCcchhhcChhhceEecccCcCcchhhccCCc
Confidence 99999999977788888887766677888899999999999999999998764
No 2
>PLN02784 alpha-amylase
Probab=100.00 E-value=1.9e-61 Score=485.49 Aligned_cols=294 Identities=52% Similarity=1.012 Sum_probs=260.3
Q ss_pred cCccccCCceeEEEEeeCCCCCCc-hHHHHHHhhhHHHHcCCCEEEeCCCCCCCCCCCCCcccCCCcCCCCCCHHHHHHH
Q 021281 17 LGAVIRNGREILFQGFNWESCKHD-WWRNLERKVPDISKSGFTSVWLPPATHSFAPEGYLPQNLYSLNSSYGSEHLLKAL 95 (314)
Q Consensus 17 ~~~~~~~~~~~i~q~F~w~~~~~g-~~~gi~~~ldyl~~lG~~~I~l~Pi~~~~~~~gY~~~d~~~id~~~Gt~~df~~l 95 (314)
+.....++.+||+|+|+|+++++| ||++|+++|+||++||||+|||+|++++.+++||+|.|||.|+++|||.++|++|
T Consensus 494 ~~~~~~~~~eVmlQgF~Wds~~dg~w~~~I~ekldyL~~LG~taIWLpP~~~s~s~~GY~p~D~y~lds~yGT~~ELk~L 573 (894)
T PLN02784 494 ICSGTGSGFEILCQGFNWESHKSGRWYMELGEKAAELSSLGFTVVWLPPPTESVSPEGYMPKDLYNLNSRYGTIDELKDL 573 (894)
T ss_pred ccccccCCceEEEEeEEcCcCCCCchHHHHHHHHHHHHHhCCCEEEeCCCCCCCCCCCcCcccccccCcCcCCHHHHHHH
Confidence 444567778999999999999987 8999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhCCCEEEEeeeeccccCCCCCCCCcCcCCCCCCCCCCCCCcccCC---CCCccccCCCCCCCCCCCCCCCHHHHH
Q 021281 96 LHKMKQHKVRAMADIVINHRVGTTQGHGGKYNRYDGIPLSWDEHAVTSCT---GGLGNGSTGDNFHGVPNIDHTQHFVRK 172 (314)
Q Consensus 96 v~~ah~~Gi~VilD~V~NH~~~~~~~~~~~y~~f~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~dln~~~p~v~~ 172 (314)
|++||++||+||+|+|+||++.......+.|..|.+ ..+|.+..++... .+.++.+.+.++.++||||+.||+||+
T Consensus 574 I~a~H~~GIkVIlDiViNH~ag~f~~~~g~~~~f~g-~~dW~d~~i~~ddp~F~GrG~~~sgddf~~lPDLDh~npeVR~ 652 (894)
T PLN02784 574 VKSFHEVGIKVLGDAVLNHRCAHFQNQNGVWNIFGG-RLNWDDRAVVADDPHFQGRGNKSSGDNFHAAPNIDHSQDFVRK 652 (894)
T ss_pred HHHHHHCCCEEEEEECcccccccccCCCCcccccCC-eecCCCCcccCCCcccCCcCCcCcccccCcCCcCCCCCHHHHH
Confidence 999999999999999999999765544455666654 3566655433221 233455566778999999999999999
Q ss_pred HHHHHHHHHHHhCCCCEEEeccCCCCCHHHHHHHHHhhCCCeEEEcccCCCCCCCCCCCCccchhHHHHhhhhccCCCcc
Q 021281 173 DIIAWLRWLRNTVGFQDFRFDFARGYSAKYVKEYIEGARPIFSVGEYWDSCNYNSHGLDYNQDSHRQRIINWIDGTGQLS 252 (314)
Q Consensus 173 ~l~~~~~~w~~~~gvDGfRlDaa~~i~~~f~~~~~~~~~~~~~~gE~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (314)
+|+++++||++++||||||+|+|+|+..+|+++++++.+|.|+|||+|++..|..+.++|+++++++.+..|++.+++..
T Consensus 653 eL~~WlkWL~~e~G~DGfRLDaVKgf~~~Fvkeyv~a~kp~F~VGEyWd~~~~~~g~~~Ynqd~~rq~l~dwi~~tgg~~ 732 (894)
T PLN02784 653 DLKEWLCWMRKEVGYDGWRLDFVRGFWGGYVKDYMEASEPYFAVGEYWDSLSYTYGEMDYNQDAHRQRIVDWINATNGTA 732 (894)
T ss_pred HHHHHHHHHHhccCCCEEEEeccCCCCHHHHHHHHhccCCcEEEEEeccccccccCccccCchhHHHHHHHHHHhCCCce
Confidence 99999999998999999999999999999999999999999999999999877778999999999999999999988889
Q ss_pred eeeChhhHHHHHHHHc-cchhHHHhhhCCCCCCccccCCceeeccCCCCCCCCCCCCCCC
Q 021281 253 AAFDFTTKGILQEAVK-GQFWRLRDAQGKPPGVMGWWPSRAVTFLDNHDTGSTQVPHDYR 311 (314)
Q Consensus 253 ~~~df~l~~~l~~~~~-g~~~~l~~~~~~~~~~~~~~p~~~v~F~~NHD~~R~~~~~~~~ 311 (314)
++|||++++.|++++. ++.|++.+..++++++++..|.++||||+||||+++|+.|+.+
T Consensus 733 saFDfplk~~L~~A~~~~e~wrL~d~~g~~~glv~~~P~~AVTFVDNHDTg~~Q~~w~~p 792 (894)
T PLN02784 733 GAFDVTTKGILHSALERCEYWRLSDQKGKPPGVVGWWPSRAVTFIENHDTGSTQGHWRFP 792 (894)
T ss_pred eeechhHHHHHHHHHhccchhhhhhccCCCCCeeccccCceEEEecCCCCCCCcccCCCC
Confidence 9999999999999995 5788998888777788999999999999999999999977543
No 3
>PLN00196 alpha-amylase; Provisional
Probab=100.00 E-value=9.7e-61 Score=461.36 Aligned_cols=296 Identities=47% Similarity=0.943 Sum_probs=246.9
Q ss_pred ccCccccCCceeEEEEeeCCCCC-C-chHHHHHHhhhHHHHcCCCEEEeCCCCCCCCCCCCCcccCCCcC-CCCCCHHHH
Q 021281 16 DLGAVIRNGREILFQGFNWESCK-H-DWWRNLERKVPDISKSGFTSVWLPPATHSFAPEGYLPQNLYSLN-SSYGSEHLL 92 (314)
Q Consensus 16 ~~~~~~~~~~~~i~q~F~w~~~~-~-g~~~gi~~~ldyl~~lG~~~I~l~Pi~~~~~~~gY~~~d~~~id-~~~Gt~~df 92 (314)
+++|+.. +++||||+|+|+++. + |||++|+++|+||++||||+|||+|++++.++|||++.|||+|+ ++|||.+||
T Consensus 16 ~~~~~~~-~~~v~~Q~F~W~~~~~~gg~~~~i~~kldyL~~LGvtaIWL~P~~~s~s~hGY~~~D~y~ld~~~fGt~~el 94 (428)
T PLN00196 16 GLSSNLA-AGQVLFQGFNWESWKQNGGWYNFLMGKVDDIAAAGITHVWLPPPSHSVSEQGYMPGRLYDLDASKYGNEAQL 94 (428)
T ss_pred ccCcccC-CCCEEEEeeccCCCCCCCcCHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCccccCCCCcccCCCHHHH
Confidence 4666665 347999999999844 3 49999999999999999999999999999999999999999999 699999999
Q ss_pred HHHHHHHhhCCCEEEEeeeeccccCCCCCCCCcCcCCCC----CCCCCCCCCcc----cCCCCCccccCCCCCCCCCCCC
Q 021281 93 KALLHKMKQHKVRAMADIVINHRVGTTQGHGGKYNRYDG----IPLSWDEHAVT----SCTGGLGNGSTGDNFHGVPNID 164 (314)
Q Consensus 93 ~~lv~~ah~~Gi~VilD~V~NH~~~~~~~~~~~y~~f~~----~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~dln 164 (314)
++||++||++||+||+|+|+||++.++....+.|..|.+ +..+|.+...+ .+.++.++...++++.++||||
T Consensus 95 k~Lv~~aH~~GIkVilDvV~NH~~~~~~~~~~~y~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~lpDLn 174 (428)
T PLN00196 95 KSLIEAFHGKGVQVIADIVINHRTAEHKDGRGIYCLFEGGTPDSRLDWGPHMICRDDTQYSDGTGNLDTGADFAAAPDID 174 (428)
T ss_pred HHHHHHHHHCCCEEEEEECccCcccccccCCCceEECCCCCCCCccccccccCCCCcccccCCCCceeCCCCCCCCCccC
Confidence 999999999999999999999999877644344433332 12445432222 2334444555677889999999
Q ss_pred CCCHHHHHHHHHHHHHHHHhCCCCEEEeccCCCCCHHHHHHHHHhhCCCeEEEcccCCCCCC-CCCCCCccchhHHHHhh
Q 021281 165 HTQHFVRKDIIAWLRWLRNTVGFQDFRFDFARGYSAKYVKEYIEGARPIFSVGEYWDSCNYN-SHGLDYNQDSHRQRIIN 243 (314)
Q Consensus 165 ~~~p~v~~~l~~~~~~w~~~~gvDGfRlDaa~~i~~~f~~~~~~~~~~~~~~gE~~~~~~y~-~~~~~~~~~~~~~~~~~ 243 (314)
++||+||++|++++++|++++||||||+|+|||++.+|+++++++.+|.|+|||+|++.+|. .++++|.++++++.+..
T Consensus 175 ~~np~V~~~l~~~~~wl~~~~GiDG~RlD~ak~~~~~f~~~~v~~~~p~f~VGE~W~~~~~~~~~~~~~~~~~~r~~l~~ 254 (428)
T PLN00196 175 HLNKRVQRELIGWLLWLKSDIGFDAWRLDFAKGYSAEVAKVYIDGTEPSFAVAEIWTSMAYGGDGKPEYDQNAHRQELVN 254 (428)
T ss_pred CCCHHHHHHHHHHHHHHhhCCCCCEEEeehhhhCCHHHHHHHHHccCCcEEEEEEeccccccccCCccccchhhHHHHHH
Confidence 99999999999999999888999999999999999999999998888999999999987664 67888888888899999
Q ss_pred hhccCCCc---ceeeChhhHHHHHHHHccchhHHHhhhCCCCCCccccCCceeeccCCCCCCCCCCCCCCCC
Q 021281 244 WIDGTGQL---SAAFDFTTKGILQEAVKGQFWRLRDAQGKPPGVMGWWPSRAVTFLDNHDTGSTQVPHDYRL 312 (314)
Q Consensus 244 ~~~~~~~~---~~~~df~l~~~l~~~~~g~~~~l~~~~~~~~~~~~~~p~~~v~F~~NHD~~R~~~~~~~~~ 312 (314)
|++.+++. .++|||++...+..++.++.+++.+......++.+..|.++||||+||||+|++++++...
T Consensus 255 ~l~~~g~~~~~~~~fDF~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~P~~aVtFvdNHDT~r~~~~~~~~~ 326 (428)
T PLN00196 255 WVDRVGGAASPATVFDFTTKGILNVAVEGELWRLRGADGKAPGVIGWWPAKAVTFVDNHDTGSTQHMWPFPS 326 (428)
T ss_pred HHHhcCCccCcceeecccchHHHHHHhcCCchhhhhhcccCcchhhcChhhceeeccCCCCccccccCCCcc
Confidence 99987643 4599999999888788777777777655445667778999999999999999999987543
No 4
>PRK09441 cytoplasmic alpha-amylase; Reviewed
Probab=100.00 E-value=6.9e-54 Score=422.15 Aligned_cols=268 Identities=26% Similarity=0.524 Sum_probs=204.8
Q ss_pred ceeEEEEeeCCCCCCc-hHHHHHHhhhHHHHcCCCEEEeCCCCCCCC---CCCCCcccCC---------CcCCCCCCHHH
Q 021281 25 REILFQGFNWESCKHD-WWRNLERKVPDISKSGFTSVWLPPATHSFA---PEGYLPQNLY---------SLNSSYGSEHL 91 (314)
Q Consensus 25 ~~~i~q~F~w~~~~~g-~~~gi~~~ldyl~~lG~~~I~l~Pi~~~~~---~~gY~~~d~~---------~id~~~Gt~~d 91 (314)
.+||||+|+|+++.+| +|++|+++||||++||||+|||+||+++.+ +|||++.||| +|||+|||++|
T Consensus 3 ~~~~~q~f~w~~~~~~~~~~~I~~kldyl~~LGvtaIwl~P~~~~~~~~~~hgY~~~D~~~~~~~~~~~~id~~fGt~~d 82 (479)
T PRK09441 3 NGTMMQYFEWYLPNDGKLWNRLAERAPELAEAGITAVWLPPAYKGTSGGYDVGYGVYDLFDLGEFDQKGTVRTKYGTKEE 82 (479)
T ss_pred CceEEEEEEeccCCCccHHHHHHHHHHHHHHcCCCEEEeCCCccCCCCCCCCCCCeecccccccccccCCcCcCcCCHHH
Confidence 4699999999998877 899999999999999999999999999874 6999999999 78999999999
Q ss_pred HHHHHHHHhhCCCEEEEeeeeccccCCCC--CCC-------------------CcCcCCCCC----C-----CCCCCCCc
Q 021281 92 LKALLHKMKQHKVRAMADIVINHRVGTTQ--GHG-------------------GKYNRYDGI----P-----LSWDEHAV 141 (314)
Q Consensus 92 f~~lv~~ah~~Gi~VilD~V~NH~~~~~~--~~~-------------------~~y~~f~~~----~-----~~~~~~~~ 141 (314)
||+||++||++||+||+|+|+|||+..+. +.. ..|.+|..+ . ..|+..+.
T Consensus 83 l~~Li~~~H~~Gi~vi~D~V~NH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (479)
T PRK09441 83 LLNAIDALHENGIKVYADVVLNHKAGADEKETFRVVEVDPDDRTQIISEPYEIEGWTRFTFPGRGGKYSDFKWHWYHFSG 162 (479)
T ss_pred HHHHHHHHHHCCCEEEEEECcccccCCCcceeeeeeeeCccccccccCCceeecccccccCCCCCCcCCcceeCCcCCCC
Confidence 99999999999999999999999996432 211 001111100 0 01111100
Q ss_pred ccCC---------------CCCc----cccCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCCCCEEEeccCCCCCHHH
Q 021281 142 TSCT---------------GGLG----NGSTGDNFHGVPNIDHTQHFVRKDIIAWLRWLRNTVGFQDFRFDFARGYSAKY 202 (314)
Q Consensus 142 ~~~~---------------~~~~----~~~~~~~~~~~~dln~~~p~v~~~l~~~~~~w~~~~gvDGfRlDaa~~i~~~f 202 (314)
..+. .++. ....++.+.++||||++||+||++|++++++|++++||||||+|+|+|++.+|
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~lpDLn~~np~V~~~l~~~~~~w~~~~giDGfRlDavk~v~~~f 242 (479)
T PRK09441 163 TDYDENPDESGIFKIVGDGKGWDDQVDDENGNFDYLMGADIDFRHPEVREELKYWAKWYMETTGFDGFRLDAVKHIDAWF 242 (479)
T ss_pred cccccccCcCceEEecCCCCCCccccccccCCcccccccccccCCHHHHHHHHHHHHHHHHhcCCCEEEEhhhcCCCHHH
Confidence 0010 0111 01123456779999999999999999999999977999999999999999999
Q ss_pred HHHHHHhhC-----CCeEEEcccCCCCCCCCCCCCccchhHHHHhhhhccCCCcceeeChhhHHHHHHHHcc-chhHHHh
Q 021281 203 VKEYIEGAR-----PIFSVGEYWDSCNYNSHGLDYNQDSHRQRIINWIDGTGQLSAAFDFTTKGILQEAVKG-QFWRLRD 276 (314)
Q Consensus 203 ~~~~~~~~~-----~~~~~gE~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~df~l~~~l~~~~~g-~~~~l~~ 276 (314)
|+++.++++ +.|++||+|.+. ...+..|+...+...++|||++.+.+++++.+ ...++..
T Consensus 243 ~~~~~~~~~~~~~~~~~~vGE~~~~~--------------~~~~~~y~~~~~~~~~~~Df~~~~~l~~~~~~~~~~~l~~ 308 (479)
T PRK09441 243 IKEWIEHVREVAGKDLFIVGEYWSHD--------------VDKLQDYLEQVEGKTDLFDVPLHYNFHEASKQGRDYDMRN 308 (479)
T ss_pred HHHHHHHHHHhcCCCeEEEEeecCCC--------------hHHHHHHHHhcCCCceEecHHHHHHHHHHHhcCCccchHh
Confidence 999998854 368999999872 34567787765445789999999999999853 4445555
Q ss_pred hhCCCCCCccccCCceeeccCCCCCCCCCCCC
Q 021281 277 AQGKPPGVMGWWPSRAVTFLDNHDTGSTQVPH 308 (314)
Q Consensus 277 ~~~~~~~~~~~~p~~~v~F~~NHD~~R~~~~~ 308 (314)
.+.. ......|..+++|++|||++|..+..
T Consensus 309 ~~~~--~~~~~~~~~~~~FldNHD~~R~~~~~ 338 (479)
T PRK09441 309 IFDG--TLVEADPFHAVTFVDNHDTQPGQALE 338 (479)
T ss_pred hhCc--chhhcCcccceeeeccccCCCccccc
Confidence 5431 12233566889999999999987654
No 5
>PRK09505 malS alpha-amylase; Reviewed
Probab=100.00 E-value=7e-46 Score=374.21 Aligned_cols=268 Identities=18% Similarity=0.239 Sum_probs=188.4
Q ss_pred CccccCCceeEEEEeeCCCC-------------C----------CchHHHHHHhhhHHHHcCCCEEEeCCCCCCC-----
Q 021281 18 GAVIRNGREILFQGFNWESC-------------K----------HDWWRNLERKVPDISKSGFTSVWLPPATHSF----- 69 (314)
Q Consensus 18 ~~~~~~~~~~i~q~F~w~~~-------------~----------~g~~~gi~~~ldyl~~lG~~~I~l~Pi~~~~----- 69 (314)
.|..|. ++||||+|.-.+. + +|||+||+++|+||++||||+|||+||+++.
T Consensus 183 ~~~~W~-~aviYqI~~DRF~nGd~~Nd~~~g~~~d~~~~~~~f~GGdl~Gi~~kLdyl~~LGv~aIwlsPi~~~~~~~~~ 261 (683)
T PRK09505 183 APFDWH-NATVYFVLTDRFENGDPSNDHSYGRHKDGMQEIGTFHGGDLRGLTEKLDYLQQLGVNALWISSPLEQIHGWVG 261 (683)
T ss_pred CChhhc-cCcEEEEehhhhcCCCcccccccCcCCCCccccCcccCCCHHHHHHhhHHHHHcCCCEEEeCccccccccccc
Confidence 444453 4899999986442 1 2689999999999999999999999999762
Q ss_pred ----------CCCCCCcccCCCcCCCCCCHHHHHHHHHHHhhCCCEEEEeeeeccccCCCC------CCCC---------
Q 021281 70 ----------APEGYLPQNLYSLNSSYGSEHLLKALLHKMKQHKVRAMADIVINHRVGTTQ------GHGG--------- 124 (314)
Q Consensus 70 ----------~~~gY~~~d~~~id~~~Gt~~df~~lv~~ah~~Gi~VilD~V~NH~~~~~~------~~~~--------- 124 (314)
++|||++.||+.|||+|||+++|++||++||++||+||+|+|+||++.... ++..
T Consensus 262 ~g~~g~~~~~~yhgY~~~D~~~id~~~Gt~~dfk~Lv~~aH~~Gi~VilD~V~NH~~~~~~~d~~~~~f~~~~~~~~~~~ 341 (683)
T PRK09505 262 GGTKGDFPHYAYHGYYTLDWTKLDANMGTEADLRTLVDEAHQRGIRILFDVVMNHTGYATLADMQEFQFGALYLSGDENK 341 (683)
T ss_pred cccccCCCcCCCCCCCccccccCCCCCCCHHHHHHHHHHHHHCCCEEEEEECcCCCcccccccccccchhhhhhhccccc
Confidence 679999999999999999999999999999999999999999999995321 1111
Q ss_pred ------cCcCCCCCCCCCCCCC-cccCCCCCc---------------------cccCCCCCCCCCCCCCC----------
Q 021281 125 ------KYNRYDGIPLSWDEHA-VTSCTGGLG---------------------NGSTGDNFHGVPNIDHT---------- 166 (314)
Q Consensus 125 ------~y~~f~~~~~~~~~~~-~~~~~~~~~---------------------~~~~~~~~~~~~dln~~---------- 166 (314)
++.++......|++.+ ...+.++.. .....+....|||||++
T Consensus 342 ~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~wwg~~w~~~~~~~~~~~~~~~~~~~l~~LPdl~te~~~~~~lp~f 421 (683)
T PRK09505 342 KTLGERWSDWQPAAGQNWHSFNDYINFSDSTAWDKWWGKDWIRTDIGDYDNPGFDDLTMSLAFLPDIKTESTQASGLPVF 421 (683)
T ss_pred cccCcccccccccccccccccccccccCCccccccccccccccccccccccccccccccccccCCcccccCccccccchh
Confidence 1111111112333221 111111110 00112234678888886
Q ss_pred -------------CHHHHHHHHHHHHHHHHhCCCCEEEeccCCCCCHHHHHHHHHhh----------C--------CCeE
Q 021281 167 -------------QHFVRKDIIAWLRWLRNTVGFQDFRFDFARGYSAKYVKEYIEGA----------R--------PIFS 215 (314)
Q Consensus 167 -------------~p~v~~~l~~~~~~w~~~~gvDGfRlDaa~~i~~~f~~~~~~~~----------~--------~~~~ 215 (314)
||+||++|++++++|++++||||||||+|+|++.+||+++...+ + ++|+
T Consensus 422 ~~~~p~~~~~~~~n~~Vr~yL~~~ik~Wv~e~GIDGfRlDaakhV~~~FW~~~~~~~~~~l~~~k~~~~d~~~~~~~~~~ 501 (683)
T PRK09505 422 YANKPDTRAKAIDGYTPRDYLTHWLSQWVRDYGIDGFRVDTAKHVELPAWQQLKQEASAALAEWKKANPDKALDDAPFWM 501 (683)
T ss_pred hhcCcccccccccCHHHHHHHHHHHHHHHHhcCCCEEEEechHhCCHHHHHHHHHHHHHHHHHHHHhccccccccCCeEE
Confidence 45999999999999998899999999999999999999987654 1 3689
Q ss_pred EEcccCCCCCCCCCCCCccchhHHHHhhhhccCCCcceeeChhhHHHHHHHHcc--chhHHHhhhCCCCCCccccCCcee
Q 021281 216 VGEYWDSCNYNSHGLDYNQDSHRQRIINWIDGTGQLSAAFDFTTKGILQEAVKG--QFWRLRDAQGKPPGVMGWWPSRAV 293 (314)
Q Consensus 216 ~gE~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~df~l~~~l~~~~~g--~~~~l~~~~~~~~~~~~~~p~~~v 293 (314)
+||+|...+ ....|.. .++++++||+|...+.+++.. ....+...... .. .+...+
T Consensus 502 vGEvw~~~~---------------~~~~y~~--~~fDsv~NF~~~~~~~~~~~~~~~l~~~~~~~~~---~~--~~~~~l 559 (683)
T PRK09505 502 TGEAWGHGV---------------MKSDYYR--HGFDAMINFDYQEQAAKAVDCLAQMDPTYQQMAE---KL--QDFNVL 559 (683)
T ss_pred EEEecCCch---------------hhHHHHh--hcCccccCchHHHHHHHHHHHHHHHHHHHHHHhh---hc--Ccccee
Confidence 999997521 1133443 358999999999887766531 11122111110 01 223567
Q ss_pred eccCCCCCCCCCCCC
Q 021281 294 TFLDNHDTGSTQVPH 308 (314)
Q Consensus 294 ~F~~NHD~~R~~~~~ 308 (314)
+|++|||++|..+..
T Consensus 560 ~FLdNHDt~Rf~s~~ 574 (683)
T PRK09505 560 SYLSSHDTRLFFEGG 574 (683)
T ss_pred ecccCCChhhhhhhc
Confidence 899999999976654
No 6
>PRK10785 maltodextrin glucosidase; Provisional
Probab=100.00 E-value=1.8e-46 Score=377.49 Aligned_cols=241 Identities=18% Similarity=0.255 Sum_probs=173.7
Q ss_pred chHHHHHHhhhHHHHcCCCEEEeCCCCCCCCCCCCCcccCCCcCCCCCCHHHHHHHHHHHhhCCCEEEEeeeeccccCCC
Q 021281 40 DWWRNLERKVPDISKSGFTSVWLPPATHSFAPEGYLPQNLYSLNSSYGSEHLLKALLHKMKQHKVRAMADIVINHRVGTT 119 (314)
Q Consensus 40 g~~~gi~~~ldyl~~lG~~~I~l~Pi~~~~~~~gY~~~d~~~id~~~Gt~~df~~lv~~ah~~Gi~VilD~V~NH~~~~~ 119 (314)
|||+||+++||||++||||+|||+||++++++|||++.||++|||+|||+++|++||++||++|||||||+|+||+|.+|
T Consensus 176 GDl~GI~~kLdYL~~LGv~~I~L~Pif~s~s~hgYd~~Dy~~iDp~~Gt~~df~~Lv~~aH~rGikVilD~V~NH~~~~~ 255 (598)
T PRK10785 176 GDLDGISEKLPYLKKLGVTALYLNPIFTAPSVHKYDTEDYRHVDPQLGGDAALLRLRHATQQRGMRLVLDGVFNHTGDSH 255 (598)
T ss_pred cCHHHHHHHHHHHHHcCCCEEEeCCcccCCCCCCcCcccccccCcccCCHHHHHHHHHHHHHCCCEEEEEECCCcCCCCC
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCCCC-------cCcCCCCCCCCCCCCCcccCCCCCccccCCCCCCCCCCCCCCCHHHHHHHHH----HHHHHHHh-CCC
Q 021281 120 QGHGG-------KYNRYDGIPLSWDEHAVTSCTGGLGNGSTGDNFHGVPNIDHTQHFVRKDIIA----WLRWLRNT-VGF 187 (314)
Q Consensus 120 ~~~~~-------~y~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~~p~v~~~l~~----~~~~w~~~-~gv 187 (314)
+++.. .|.....+..+|.. +. .++....+. ....+|+||++||+||++|++ ++++|+++ +||
T Consensus 256 ~~f~~~~~~~~ga~~~~~spy~dwf~--~~--~~~~~~~w~--g~~~lPdLN~~np~v~~~l~~~~~~v~~~Wl~~~~gi 329 (598)
T PRK10785 256 PWFDRHNRGTGGACHHPDSPWRDWYS--FS--DDGRALDWL--GYASLPKLDFQSEEVVNEIYRGEDSIVRHWLKAPYNI 329 (598)
T ss_pred HHHHHhhccccccccCCCCCcceeeE--EC--CCCCcCCcC--CCCcCccccCCCHHHHHHHHhhhhHHHHHhhcCCCCC
Confidence 75431 11110000111210 00 011111122 346799999999999999995 79999975 899
Q ss_pred CEEEeccCCCCC--------HHHHHHHHHhhC---C-CeEEEcccCCCCCCCCCCCCccchhHHHHhhhhccCCCcceee
Q 021281 188 QDFRFDFARGYS--------AKYVKEYIEGAR---P-IFSVGEYWDSCNYNSHGLDYNQDSHRQRIINWIDGTGQLSAAF 255 (314)
Q Consensus 188 DGfRlDaa~~i~--------~~f~~~~~~~~~---~-~~~~gE~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (314)
||||||+|++++ .+||+++.++++ | .+++||+|... ..|+.. ++.++++
T Consensus 330 DG~RlDva~~v~~~~~~~~~~~f~~~~~~~vk~~~pd~~ligE~~~~~------------------~~~l~~-~~~d~~m 390 (598)
T PRK10785 330 DGWRLDVVHMLGEGGGARNNLQHVAGITQAAKEENPEAYVLGEHFGDA------------------RQWLQA-DVEDAAM 390 (598)
T ss_pred cEEEEecHhHhccccCccccHHHHHHHHHHHHhhCCCeEEEEeccCCh------------------hhhccC-ccccccc
Confidence 999999999884 589999988765 3 68999999751 233332 2356667
Q ss_pred Ch-hhHHHHHHHHccc----------hhHHHhhhCCCCCCccccCC----ceeeccCCCCCCCCCCCC
Q 021281 256 DF-TTKGILQEAVKGQ----------FWRLRDAQGKPPGVMGWWPS----RAVTFLDNHDTGSTQVPH 308 (314)
Q Consensus 256 df-~l~~~l~~~~~g~----------~~~l~~~~~~~~~~~~~~p~----~~v~F~~NHD~~R~~~~~ 308 (314)
++ .|...++..+.+. ...+...+.. .....|. .+++|++|||++|..+..
T Consensus 391 ny~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~---~~~~~~~~~~~~~~n~l~nHD~~R~~~~~ 455 (598)
T PRK10785 391 NYRGFAFPLRAFLANTDIAYHPQQIDAQTCAAWMDE---YRAGLPHQQQLRQFNQLDSHDTARFKTLL 455 (598)
T ss_pred cchhhhhHHHHHhhccccccCccCCCHHHHHHHHHH---HHHhCCHHHHHHhhhccCCCccchhhhhh
Confidence 65 4555555555321 1222222110 0111222 346899999999977654
No 7
>TIGR02456 treS_nterm trehalose synthase. Trehalose synthase interconverts maltose and alpha, alpha-trehalose by transglucosylation. This is one of at least three mechanisms for biosynthesis of trehalose, an important and widespread compatible solute. However, it is not driven by phosphate activation of sugars and its physiological role may tend toward trehalose degradation. This view is accentuated by numerous examples of fusion to a probable maltokinase domain. The sequence region described by this model is found both as the whole of a trehalose synthase and as the N-terminal region of a larger fusion protein that includes trehalose synthase activity. Several of these fused trehalose synthases have a domain homologous to proteins with maltokinase activity from Actinoplanes missouriensis and Streptomyces coelicolor (PubMed:15378530).
Probab=100.00 E-value=6.7e-45 Score=362.85 Aligned_cols=262 Identities=15% Similarity=0.218 Sum_probs=191.7
Q ss_pred CceeEEEEeeCCCCC-----CchHHHHHHhhhHHHHcCCCEEEeCCCCCCCC-CCCCCcccCCCcCCCCCCHHHHHHHHH
Q 021281 24 GREILFQGFNWESCK-----HDWWRNLERKVPDISKSGFTSVWLPPATHSFA-PEGYLPQNLYSLNSSYGSEHLLKALLH 97 (314)
Q Consensus 24 ~~~~i~q~F~w~~~~-----~g~~~gi~~~ldyl~~lG~~~I~l~Pi~~~~~-~~gY~~~d~~~id~~~Gt~~df~~lv~ 97 (314)
.+.||||+|..++.. .|||+||+++||||++||||+|||+||+++++ +|||++.||++|+|+|||+++|++||+
T Consensus 4 ~~~viYqi~~~~f~d~~~~~~Gdl~gi~~~Ldyl~~LGv~~i~L~Pi~~~~~~~~gY~~~dy~~vd~~~Gt~~df~~Lv~ 83 (539)
T TIGR02456 4 KDAVFYEVHVRSFFDSNGDGIGDFPGLTSKLDYLKWLGVDALWLLPFFQSPLRDDGYDVSDYRAILPEFGTIDDFKDFVD 83 (539)
T ss_pred ccceEEEEehhHhhcCCCCCccCHHHHHHhHHHHHHCCCCEEEECCCcCCCCCCCCCCcccccccChhhCCHHHHHHHHH
Confidence 358999999986643 36999999999999999999999999999985 799999999999999999999999999
Q ss_pred HHhhCCCEEEEeeeeccccCCCCCCCC-------cCcC---CCCCCCCCCCCCc-------ccC--CCCCccccCCCCCC
Q 021281 98 KMKQHKVRAMADIVINHRVGTTQGHGG-------KYNR---YDGIPLSWDEHAV-------TSC--TGGLGNGSTGDNFH 158 (314)
Q Consensus 98 ~ah~~Gi~VilD~V~NH~~~~~~~~~~-------~y~~---f~~~~~~~~~~~~-------~~~--~~~~~~~~~~~~~~ 158 (314)
+||++||+||+|+|+||+|..++++.. .|.. +......+..... ..+ ....+..+...+..
T Consensus 84 ~ah~~Gi~vilD~V~NH~s~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~y~~~f~~ 163 (539)
T TIGR02456 84 EAHARGMRVIIDLVLNHTSDQHPWFQEARSNPDGPYRDFYVWSDTDEKYKDTRIIFVDTEKSNWTFDPVAKQYYWHRFFS 163 (539)
T ss_pred HHHHCCCEEEEEeccCcCCCCCHHHHHHhhCCCCCCCceEEecCCCcccccccccccccCCCCccccCCcCeeEEecccC
Confidence 999999999999999999999875421 1111 1100000110000 000 01111112223567
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHhCCCCEEEeccCCCC-------------CHHHHHHHHHhhC---C-CeEEEcccC
Q 021281 159 GVPNIDHTQHFVRKDIIAWLRWLRNTVGFQDFRFDFARGY-------------SAKYVKEYIEGAR---P-IFSVGEYWD 221 (314)
Q Consensus 159 ~~~dln~~~p~v~~~l~~~~~~w~~~~gvDGfRlDaa~~i-------------~~~f~~~~~~~~~---~-~~~~gE~~~ 221 (314)
.+|+||++||+||++|++++++|+ ++||||||||+++++ ..+||+++++.++ | .+++||++.
T Consensus 164 ~~pdln~~np~vr~~l~~~~~~w~-~~GvDGfRlDav~~~~~~~~~~~~~~p~~~~f~~~~~~~v~~~~p~~~~iaE~~~ 242 (539)
T TIGR02456 164 HQPDLNYDNPAVHDAVHDVMRFWL-DLGVDGFRLDAVPYLYEREGTSCENLPETHEFLKRLRKMVDREYPGRMLLAEANQ 242 (539)
T ss_pred CCCccCCCCHHHHHHHHHHHHHHH-HcCCCEEEEecHHhhhccCCCccCCCchHHHHHHHHHHHHHHhCCCeEEEEEeCC
Confidence 899999999999999999999999 699999999999876 2589999988764 3 689999854
Q ss_pred CCCCCCCCCCCccchhHHHHhhhhcc-CC-CcceeeChhhHHHHHHHH-ccchhHHHhhhCCCCCCccccCCceeeccCC
Q 021281 222 SCNYNSHGLDYNQDSHRQRIINWIDG-TG-QLSAAFDFTTKGILQEAV-KGQFWRLRDAQGKPPGVMGWWPSRAVTFLDN 298 (314)
Q Consensus 222 ~~~y~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~df~l~~~l~~~~-~g~~~~l~~~~~~~~~~~~~~p~~~v~F~~N 298 (314)
. ...+..|+.. .+ +++++|||++...+..++ .++...+...+..... ...+...++|++|
T Consensus 243 ~---------------~~~~~~y~~~~~~~~~d~~f~f~l~~~~~~~l~~~~~~~l~~~l~~~~~--~~~~~~~~~fl~n 305 (539)
T TIGR02456 243 W---------------PEEVVAYFGDEGDPECHMAFNFPVMPRIFMALRREDRSPIIDILKETPD--IPDSCQWCIFLRN 305 (539)
T ss_pred C---------------HHHHHHhhCCCCCCeeeeEEChhhhhhhhcccccCCHHHHHHHHHHhhh--ccCCCceeeecCC
Confidence 3 2344566543 22 578999999998877666 3444445444331111 1123356789999
Q ss_pred CCCCC
Q 021281 299 HDTGS 303 (314)
Q Consensus 299 HD~~R 303 (314)
||+.|
T Consensus 306 HD~~~ 310 (539)
T TIGR02456 306 HDELT 310 (539)
T ss_pred CCccC
Confidence 99976
No 8
>PF00128 Alpha-amylase: Alpha amylase, catalytic domain; InterPro: IPR006047 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Enzymes containing this domain, such as alpha-amylase, belong to family 13 (GH13 from CAZY) of the glycosyl hydrolases. The maltogenic alpha-amylase is an enzyme which catalyses hydrolysis of (1-4)-alpha-D-glucosidic linkages in polysaccharides so as to remove successive alpha-maltose residues from the non-reducing ends of the chains in the conversion of starch to maltose. Other enzymes include neopullulanase, which hydrolyses pullulan to panose, and cyclomaltodextrinase, which hydrolyses cyclodextrins. This entry represents the catalytic domain found in several protein members of this family. It has a structure consisting of an 8 stranded alpha/beta barrel that contains the active site, interrupted by a ~70 amino acid calcium-binding domain protruding between beta strand 3 and alpha helix 3, and a carboxyl-terminal Greek key beta-barrel domain []. More information about this protein can be found at Protein of the Month: alpha-Amylase [].; GO: 0003824 catalytic activity, 0043169 cation binding, 0005975 carbohydrate metabolic process; PDB: 3FAX_A 3FAW_A 2DH3_B 2DH2_A 1CIU_A 1A47_A 3BMW_A 3BMV_A 2FH8_A 2FH6_A ....
Probab=100.00 E-value=1.1e-45 Score=341.22 Aligned_cols=249 Identities=23% Similarity=0.385 Sum_probs=176.8
Q ss_pred chHHHHHHhhhHHHHcCCCEEEeCCCCCCC-CCCCCCcccCCCcCCCCCCHHHHHHHHHHHhhCCCEEEEeeeeccccCC
Q 021281 40 DWWRNLERKVPDISKSGFTSVWLPPATHSF-APEGYLPQNLYSLNSSYGSEHLLKALLHKMKQHKVRAMADIVINHRVGT 118 (314)
Q Consensus 40 g~~~gi~~~ldyl~~lG~~~I~l~Pi~~~~-~~~gY~~~d~~~id~~~Gt~~df~~lv~~ah~~Gi~VilD~V~NH~~~~ 118 (314)
|||+||+++|||||+|||++|||+||++++ +++||+|.||++|+|+|||++||++||++||++||+||+|+|+||++..
T Consensus 1 Gd~~gi~~kLdyl~~lGv~~I~l~Pi~~~~~~~~gY~~~d~~~vd~~~Gt~~d~~~Lv~~~h~~gi~VilD~V~NH~~~~ 80 (316)
T PF00128_consen 1 GDFRGIIDKLDYLKDLGVNAIWLSPIFESPNGYHGYDPSDYYAVDPRFGTMEDFKELVDAAHKRGIKVILDVVPNHTSDD 80 (316)
T ss_dssp SSHHHHHHTHHHHHHHTESEEEESS-EESSSSTTTTSESEEEEESTTTBHHHHHHHHHHHHHHTTCEEEEEEETSEEETT
T ss_pred CCHHHHHHhhHHHHHcCCCceecccccccccccccccceeeeccccccchhhhhhhhhhccccccceEEEeeeccccccc
Confidence 589999999999999999999999999987 8999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCcCcCCCC---CCCCCCC------CCcccCCCCC--ccc-cC--CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHh
Q 021281 119 TQGHGGKYNRYDG---IPLSWDE------HAVTSCTGGL--GNG-ST--GDNFHGVPNIDHTQHFVRKDIIAWLRWLRNT 184 (314)
Q Consensus 119 ~~~~~~~y~~f~~---~~~~~~~------~~~~~~~~~~--~~~-~~--~~~~~~~~dln~~~p~v~~~l~~~~~~w~~~ 184 (314)
++++......+.. ....|.+ .......++. ... .. .+.+.++|+||++||+||++|++++++|+ +
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~n~~v~~~i~~~~~~w~-~ 159 (316)
T PF00128_consen 81 HPWFQDSLNYFDNPYSDYYYWRDGEGSPPGNWYSYFGGSNWEYDDWGDEYQFWSDLPDLNYENPEVREYIIDVLKFWI-E 159 (316)
T ss_dssp SHHHHHHHTHTTSTTGTTBEEESBTSTTSSTBBCSTTTSSEESCHHTHCHSSSTTSEEBETTSHHHHHHHHHHHHHHH-H
T ss_pred cccccccccccccccccceeecccccccccccccccccccccccccccccccccccchhhhhhhhhhhhhcccccchh-h
Confidence 8752111100000 0011111 0101011111 000 11 25788999999999999999999999999 7
Q ss_pred CCCCEEEeccCCCCCHHHHHHHHHhhC----CCeEEEcccCCCCCCCCCCCCccchhHHHHhhhhcc-CCCcceeeChhh
Q 021281 185 VGFQDFRFDFARGYSAKYVKEYIEGAR----PIFSVGEYWDSCNYNSHGLDYNQDSHRQRIINWIDG-TGQLSAAFDFTT 259 (314)
Q Consensus 185 ~gvDGfRlDaa~~i~~~f~~~~~~~~~----~~~~~gE~~~~~~y~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~df~l 259 (314)
.||||||||+|++++.++|+++.++++ ..+++||+|... ...+..+... ......++++.+
T Consensus 160 ~giDGfR~D~~~~~~~~~~~~~~~~~~~~~~~~~~i~E~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~ 225 (316)
T PF00128_consen 160 EGIDGFRLDAAKHIPKEFWKEFRDEVKEEKPDFFLIGEVWGGD--------------NEDLRQYAYDGYFDLDSVFDFPD 225 (316)
T ss_dssp TTESEEEETTGGGSSHHHHHHHHHHHHHHHTTSEEEEEESSSS--------------HHHHHHHHHHGTTSHSEEEHHHH
T ss_pred ceEeEEEEccccccchhhHHHHhhhhhhhccccceeeeeccCC--------------ccccchhhhccccccchhhcccc
Confidence 889999999999999999999998875 478999999862 1112222211 112345677776
Q ss_pred HHHHHHHH---c-cc--hhHHHhhhCCCCCCccc--cCCceeeccCCCCCCCCCC
Q 021281 260 KGILQEAV---K-GQ--FWRLRDAQGKPPGVMGW--WPSRAVTFLDNHDTGSTQV 306 (314)
Q Consensus 260 ~~~l~~~~---~-g~--~~~l~~~~~~~~~~~~~--~p~~~v~F~~NHD~~R~~~ 306 (314)
........ . ++ ...+...+.. .... .+...++|++|||+.|..+
T Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~f~~nHD~~r~~~ 277 (316)
T PF00128_consen 226 YGLRSSFFDFWRHGDGDASDLANWLSS---WQSSYPDPYRAVNFLENHDTPRFAS 277 (316)
T ss_dssp HHHHHHHHHHHTTTSSHHHHHHHHHHH---HHHHSTTGGGEEEESSHTTSSTHHH
T ss_pred cccccchhhhhccccchhhhhhhhhhh---hhhhhcccceeeecccccccccchh
Confidence 66655554 2 22 2233332220 0111 2458899999999999543
No 9
>TIGR02403 trehalose_treC alpha,alpha-phosphotrehalase. Trehalose is a glucose disaccharide that serves in many biological systems as a compatible solute for protection against hyperosmotic and thermal stress. This family describes trehalose-6-phosphate hydrolase, product of the treC (or treA) gene, which is often found together with a trehalose uptake transporter and a trehalose operon repressor.
Probab=100.00 E-value=5.8e-44 Score=355.88 Aligned_cols=268 Identities=19% Similarity=0.298 Sum_probs=187.6
Q ss_pred ceeEEEEeeCCCCC-----CchHHHHHHhhhHHHHcCCCEEEeCCCCCCCC-CCCCCcccCCCcCCCCCCHHHHHHHHHH
Q 021281 25 REILFQGFNWESCK-----HDWWRNLERKVPDISKSGFTSVWLPPATHSFA-PEGYLPQNLYSLNSSYGSEHLLKALLHK 98 (314)
Q Consensus 25 ~~~i~q~F~w~~~~-----~g~~~gi~~~ldyl~~lG~~~I~l~Pi~~~~~-~~gY~~~d~~~id~~~Gt~~df~~lv~~ 98 (314)
+.||||+|...+.. .|+++||+++|+||++|||++|||+||+++++ .+||++.||++|+|+|||+++|++||++
T Consensus 4 ~~v~Y~i~~~~f~~~~~~~~G~~~gi~~~l~yl~~lG~~~i~l~Pi~~~~~~~~gY~~~d~~~id~~~Gt~~~~~~lv~~ 83 (543)
T TIGR02403 4 KKVIYQIYPKSFYDSTGDGTGDLRGIIEKLDYLKKLGVDYIWLNPFYVSPQKDNGYDVSDYYAINPLFGTMADFEELVSE 83 (543)
T ss_pred cCEEEEEEhHHHhcCCCCCccCHHHHHHhHHHHHHcCCCEEEECCcccCCCCCCCCCccccCccCcccCCHHHHHHHHHH
Confidence 57999999986643 25999999999999999999999999999885 4699999999999999999999999999
Q ss_pred HhhCCCEEEEeeeeccccCCCCCCCC------cCcCC---CC----CCCCCCCC-CcccC--CCCCccccCCCCCCCCCC
Q 021281 99 MKQHKVRAMADIVINHRVGTTQGHGG------KYNRY---DG----IPLSWDEH-AVTSC--TGGLGNGSTGDNFHGVPN 162 (314)
Q Consensus 99 ah~~Gi~VilD~V~NH~~~~~~~~~~------~y~~f---~~----~~~~~~~~-~~~~~--~~~~~~~~~~~~~~~~~d 162 (314)
||++||+||+|+|+||++.+|+++.. .|..+ .. .+.+|.+. ....+ ....+.++.+.+...+||
T Consensus 84 ah~~gi~vilD~v~NH~~~~~~~f~~~~~~~~~y~~~y~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~y~~~f~~~~pd 163 (543)
T TIGR02403 84 AKKRNIKIMLDMVFNHTSTEHEWFKKALAGDSPYRDFYIWRDPKGKPPTNWQSKFGGSAWEYFGDTGQYYLHLFDKTQAD 163 (543)
T ss_pred HHHCCCEEEEEECccccccchHHHHHhhcCCCcccCceEecCCCCCCCCcccccCCCcCccccCCCCceEEeccCCcCCc
Confidence 99999999999999999999875432 12111 10 00112110 00000 011112223334568999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHhCCCCEEEeccCCCCC-----------------------HHHHHHHHHhhC---CCeEE
Q 021281 163 IDHTQHFVRKDIIAWLRWLRNTVGFQDFRFDFARGYS-----------------------AKYVKEYIEGAR---PIFSV 216 (314)
Q Consensus 163 ln~~~p~v~~~l~~~~~~w~~~~gvDGfRlDaa~~i~-----------------------~~f~~~~~~~~~---~~~~~ 216 (314)
||++||+||++|.+++++|+ +.||||||||+|+|++ .+||+++.+.++ +.|++
T Consensus 164 ln~~np~v~~~i~~~~~~W~-~~giDGfRlDa~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~lv 242 (543)
T TIGR02403 164 LNWENPEVREELKDVVNFWR-DKGVDGFRLDVINLISKDQFFEDDEIGDGRRFYTDGPRVHEYLQEMNQEVFGDNDSVTV 242 (543)
T ss_pred cCCCCHHHHHHHHHHHHHHH-HcCCCEEEEeeehhhccCcccCCCCCCCCccccCCChHHHHHHHHHHHHhhccCCeEEE
Confidence 99999999999999999999 7899999999999985 468999987663 47999
Q ss_pred EcccCCCCCCCCCCCCccchhHHHHhhhhcc-CCCcceeeChhhHHHHHHHHcc--------chhHHHhhhCCCCCCccc
Q 021281 217 GEYWDSCNYNSHGLDYNQDSHRQRIINWIDG-TGQLSAAFDFTTKGILQEAVKG--------QFWRLRDAQGKPPGVMGW 287 (314)
Q Consensus 217 gE~~~~~~y~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~df~l~~~l~~~~~g--------~~~~l~~~~~~~~~~~~~ 287 (314)
||+|... ...+..|... .++++++|+|.. ...+...+ +...+...+......+..
T Consensus 243 gE~~~~~--------------~~~~~~y~~~~~~~~d~~~nf~~--~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 306 (543)
T TIGR02403 243 GEMSSTT--------------IENCIRYSNPENKELSMVFTFHH--LKVDYPNGEKWTLAKFDFAKLKEIFSTWQTGMQA 306 (543)
T ss_pred EEeCCCC--------------HHHHHhhhCCCCCeeCeEEChhh--hhchhccccccccCCCCHHHHHHHHHHHHHhccc
Confidence 9998752 2334555432 234778888863 22222211 112233322100000111
Q ss_pred cCCceeeccCCCCCCCCCCCCC
Q 021281 288 WPSRAVTFLDNHDTGSTQVPHD 309 (314)
Q Consensus 288 ~p~~~v~F~~NHD~~R~~~~~~ 309 (314)
.....++|++|||++|..+.+.
T Consensus 307 ~~~~~~~fl~NHD~~R~~s~~g 328 (543)
T TIGR02403 307 GGGWNALFWNNHDQPRAVSRFG 328 (543)
T ss_pred cCcceeeecCCCChhhHHHhcC
Confidence 1224467999999999877664
No 10
>PRK10933 trehalose-6-phosphate hydrolase; Provisional
Probab=100.00 E-value=4.8e-43 Score=349.26 Aligned_cols=272 Identities=17% Similarity=0.219 Sum_probs=187.6
Q ss_pred ccccCCceeEEEEeeCCCCC-----CchHHHHHHhhhHHHHcCCCEEEeCCCCCCCC-CCCCCcccCCCcCCCCCCHHHH
Q 021281 19 AVIRNGREILFQGFNWESCK-----HDWWRNLERKVPDISKSGFTSVWLPPATHSFA-PEGYLPQNLYSLNSSYGSEHLL 92 (314)
Q Consensus 19 ~~~~~~~~~i~q~F~w~~~~-----~g~~~gi~~~ldyl~~lG~~~I~l~Pi~~~~~-~~gY~~~d~~~id~~~Gt~~df 92 (314)
|.++. ++||||+|...+.. .|||+||+++|+||++|||++|||+||++++. .|||++.||++|+|+|||+++|
T Consensus 5 ~~W~~-~~v~Yqi~~~~f~d~~~~~~Gdl~gi~~~ldyl~~lGv~~i~l~P~~~~~~~~~gY~~~d~~~id~~~Gt~~d~ 83 (551)
T PRK10933 5 PHWWQ-NGVIYQIYPKSFQDTTGSGTGDLRGVTQRLDYLQKLGVDAIWLTPFYVSPQVDNGYDVANYTAIDPTYGTLDDF 83 (551)
T ss_pred chhhh-cCeEEEEEchHhhcCCCCCCcCHHHHHHhhHHHHhCCCCEEEECCCCCCCCCCCCCCcccCCCcCcccCCHHHH
Confidence 44444 58999999987643 36999999999999999999999999998875 6899999999999999999999
Q ss_pred HHHHHHHhhCCCEEEEeeeeccccCCCCCCCCc------CcCC---CC-----CCCCCCCC---CcccCCCCCccccCCC
Q 021281 93 KALLHKMKQHKVRAMADIVINHRVGTTQGHGGK------YNRY---DG-----IPLSWDEH---AVTSCTGGLGNGSTGD 155 (314)
Q Consensus 93 ~~lv~~ah~~Gi~VilD~V~NH~~~~~~~~~~~------y~~f---~~-----~~~~~~~~---~~~~~~~~~~~~~~~~ 155 (314)
++||++||++||+||+|+|+||+|..|+++... |..+ .. .+..|... ....+....+..+.++
T Consensus 84 ~~lv~~~h~~gi~vilD~V~NH~s~~~~wf~~~~~~~~~y~d~y~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~y~~~ 163 (551)
T PRK10933 84 DELVAQAKSRGIRIILDMVFNHTSTQHAWFREALNKESPYRQFYIWRDGEPETPPNNWRSKFGGSAWRWHAESEQYYLHL 163 (551)
T ss_pred HHHHHHHHHCCCEEEEEECCCCccCchhHHHhhcCCCCCCcCceEecCCCCCCCCCcccccCCCccccccCCCCceEeec
Confidence 999999999999999999999999998864321 2111 00 00011100 0000111111222334
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHHhCCCCEEEeccCCCCCH-----------------------HHHHHHHHhhC-
Q 021281 156 NFHGVPNIDHTQHFVRKDIIAWLRWLRNTVGFQDFRFDFARGYSA-----------------------KYVKEYIEGAR- 211 (314)
Q Consensus 156 ~~~~~~dln~~~p~v~~~l~~~~~~w~~~~gvDGfRlDaa~~i~~-----------------------~f~~~~~~~~~- 211 (314)
+...+||||++||+||++|++++++|+ ++||||||||+|++++. +|++++.+.+.
T Consensus 164 f~~~~pdLn~~np~V~~~l~~~~~~W~-~~GvDGfRlDa~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 242 (551)
T PRK10933 164 FAPEQADLNWENPAVRAELKKVCEFWA-DRGVDGLRLDVVNLISKDQDFPDDLDGDGRRFYTDGPRAHEFLQEMNRDVFT 242 (551)
T ss_pred ccccCCccCCCCHHHHHHHHHHHHHHH-HCCCcEEEEcchhhcCcCCCCCCCcccccccccCCChHHHHHHHHHHHHhhc
Confidence 456899999999999999999999999 89999999999999863 67888876532
Q ss_pred --CCeEEEcccCCCCCCCCCCCCccchhHHHHhhhhccC-CCcceeeChhhHHHHHHHHccch--------hHHHhhhCC
Q 021281 212 --PIFSVGEYWDSCNYNSHGLDYNQDSHRQRIINWIDGT-GQLSAAFDFTTKGILQEAVKGQF--------WRLRDAQGK 280 (314)
Q Consensus 212 --~~~~~gE~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~df~l~~~l~~~~~g~~--------~~l~~~~~~ 280 (314)
+.+++||+|... ...+..|.... +.+.++|+|.. ...+.+.|.. ..+...+..
T Consensus 243 ~~~~~~vgE~~~~~--------------~~~~~~y~~~~~~~~~~~fnf~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~ 306 (551)
T PRK10933 243 PRGLMTVGEMSSTS--------------LEHCQRYAALTGSELSMTFNFHH--LKVDYPNGEKWTLAKPDFVALKTLFRH 306 (551)
T ss_pred ccCcEEEEeecCCC--------------HHHHHHhhcccCCeeeeEecHHH--hhhhhccCCcccccccCHHHHHHHHHH
Confidence 368999998641 12344554322 23567777742 2333333321 122222210
Q ss_pred CCCCccccCCceeeccCCCCCCCCCCCCC
Q 021281 281 PPGVMGWWPSRAVTFLDNHDTGSTQVPHD 309 (314)
Q Consensus 281 ~~~~~~~~p~~~v~F~~NHD~~R~~~~~~ 309 (314)
...-+. .......|++|||++|..+.+.
T Consensus 307 ~~~~~~-~~~~~~~fl~NHD~~R~~sr~g 334 (551)
T PRK10933 307 WQQGMH-NVAWNALFWCNHDQPRIVSRFG 334 (551)
T ss_pred HHHhhc-ccCeeccccCCCCcccHHHHcC
Confidence 000010 1123457999999999887775
No 11
>TIGR02402 trehalose_TreZ malto-oligosyltrehalose trehalohydrolase. Members of this family are the trehalose biosynthetic enzyme malto-oligosyltrehalose trehalohydrolase, formally known as 4-alpha-D-{(1-4)-alpha-D-glucano}trehalose trehalohydrolase (EC 3.2.1.141). It is the TreZ protein of the TreYZ pathway for trehalose biosynthesis, and alternative to the OtsAB system.
Probab=100.00 E-value=4.4e-40 Score=327.43 Aligned_cols=210 Identities=18% Similarity=0.199 Sum_probs=165.0
Q ss_pred CceeEEEEeeCCCCCCchHHHHHHhhhHHHHcCCCEEEeCCCCCCC--CCCCCCcccCCCcCCCCCCHHHHHHHHHHHhh
Q 021281 24 GREILFQGFNWESCKHDWWRNLERKVPDISKSGFTSVWLPPATHSF--APEGYLPQNLYSLNSSYGSEHLLKALLHKMKQ 101 (314)
Q Consensus 24 ~~~~i~q~F~w~~~~~g~~~gi~~~ldyl~~lG~~~I~l~Pi~~~~--~~~gY~~~d~~~id~~~Gt~~df~~lv~~ah~ 101 (314)
.+.|||+++..++...|+|+||+++|+||++||||+|||+||++.+ .+|||++.||++|+++|||.++||+||++||+
T Consensus 92 ~~~viYE~hv~~f~~~G~~~gi~~~l~yl~~LGv~~i~L~Pi~~~~~~~~~GY~~~~~~~~~~~~G~~~e~k~lV~~aH~ 171 (542)
T TIGR02402 92 EEAVIYELHVGTFTPEGTFDAAIEKLPYLADLGITAIELMPVAQFPGTRGWGYDGVLPYAPHNAYGGPDDLKALVDAAHG 171 (542)
T ss_pred cccEEEEEEhhhcCCCCCHHHHHHhhHHHHHcCCCEEEeCccccCCCCCCCCCCccCccccccccCCHHHHHHHHHHHHH
Confidence 4579999999999888999999999999999999999999998776 57999999999999999999999999999999
Q ss_pred CCCEEEEeeeeccccCCCCCCCCcCcCCCCCCCCCCCCCcccCCCCCccccCCCCCCCCCCCCCCCH---HHHHHHHHHH
Q 021281 102 HKVRAMADIVINHRVGTTQGHGGKYNRYDGIPLSWDEHAVTSCTGGLGNGSTGDNFHGVPNIDHTQH---FVRKDIIAWL 178 (314)
Q Consensus 102 ~Gi~VilD~V~NH~~~~~~~~~~~y~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~~p---~v~~~l~~~~ 178 (314)
+||+||||+|+||++.++... ..+. + .+... . . ..+ .+++|+++| +||++|++++
T Consensus 172 ~Gi~VilD~V~NH~~~~~~~~----~~~~--~-y~~~~--------~---~--~~w--g~~~n~~~~~~~~vr~~i~~~~ 229 (542)
T TIGR02402 172 LGLGVILDVVYNHFGPEGNYL----PRYA--P-YFTDR--------Y---S--TPW--GAAINFDGPGSDEVRRYILDNA 229 (542)
T ss_pred CCCEEEEEEccCCCCCccccc----cccC--c-cccCC--------C---C--CCC--CCccccCCCcHHHHHHHHHHHH
Confidence 999999999999998764311 1111 0 11100 0 0 011 246899999 9999999999
Q ss_pred HHHHHhCCCCEEEeccCCCCC----HHHHHHHHHhhC---C----CeEEEcccCCCCCCCCCCCCccchhHHHHhhhhcc
Q 021281 179 RWLRNTVGFQDFRFDFARGYS----AKYVKEYIEGAR---P----IFSVGEYWDSCNYNSHGLDYNQDSHRQRIINWIDG 247 (314)
Q Consensus 179 ~~w~~~~gvDGfRlDaa~~i~----~~f~~~~~~~~~---~----~~~~gE~~~~~~y~~~~~~~~~~~~~~~~~~~~~~ 247 (314)
++|++++||||||||++++++ .+||+++.+.++ | .+++||.|.... . .+......
T Consensus 230 ~~W~~e~~iDGfR~D~~~~~~~~~~~~~l~~~~~~~~~~~p~~~~~~li~E~~~~~~------~--------~~~~~~~~ 295 (542)
T TIGR02402 230 LYWLREYHFDGLRLDAVHAIADTSAKHILEELAREVHELAAELRPVHLIAESDLNDP------S--------LVTPREDG 295 (542)
T ss_pred HHHHHHhCCcEEEEeCHHHhccccHHHHHHHHHHHHHHHCCCCceEEEEEecCCCCC------c--------ccccccCC
Confidence 999999999999999998885 459988887654 3 689999875421 0 00000011
Q ss_pred CCCcceeeChhhHHHHHHHHcc
Q 021281 248 TGQLSAAFDFTTKGILQEAVKG 269 (314)
Q Consensus 248 ~~~~~~~~df~l~~~l~~~~~g 269 (314)
..++++.++..|+..++..+.|
T Consensus 296 ~~~~d~~~~~~~~~~~~~~~~g 317 (542)
T TIGR02402 296 GYGLDAQWNDDFHHALHVLLTG 317 (542)
T ss_pred ccceEEEECchHHHHHHHHhcC
Confidence 1236788999999999988865
No 12
>TIGR02100 glgX_debranch glycogen debranching enzyme GlgX. This family consists of the GlgX protein from the E. coli glycogen operon and probable equivalogs from other prokaryotic species. GlgX is not required for glycogen biosynthesis, but instead acts as a debranching enzyme for glycogen catabolism. This model distinguishes GlgX from pullanases and other related proteins that also operate on alpha-1,6-glycosidic linkages. In the wide band between the trusted and noise cutoffs are functionally similar enzymes, mostly from plants, that act similarly but usually are termed isoamylase.
Probab=100.00 E-value=2.5e-38 Score=321.27 Aligned_cols=256 Identities=16% Similarity=0.228 Sum_probs=181.9
Q ss_pred CceeEEEEeeCCCCC---------CchHHHHHHh--hhHHHHcCCCEEEeCCCCCCC-----------CCCCCCcccCCC
Q 021281 24 GREILFQGFNWESCK---------HDWWRNLERK--VPDISKSGFTSVWLPPATHSF-----------APEGYLPQNLYS 81 (314)
Q Consensus 24 ~~~~i~q~F~w~~~~---------~g~~~gi~~~--ldyl~~lG~~~I~l~Pi~~~~-----------~~~gY~~~d~~~ 81 (314)
.+.|||+++..++.. .|+|+||+++ |+|||+||||+|||+||++.. .+|||+|.||++
T Consensus 154 ~d~iIYE~hvr~Ft~~~~~~~~~~~Gtf~Gi~~~~~LdyLk~LGvtaI~L~Pi~~~~~~~~~~~~~~~~ywGYd~~~y~a 233 (688)
T TIGR02100 154 EDTIIYEAHVKGFTQLHPDIPEELRGTYAGLAHPAMIDYLKKLGVTAVELLPVHAFIDDRHLLEKGLRNYWGYNTLGFFA 233 (688)
T ss_pred cccEEEEEEhHHhcCCCCCCCcccccCHHHHhccchhHHHHHcCCCEEEECCcccCCccccccccCCCCccCcCcccccc
Confidence 467999999987653 2699999985 999999999999999999864 258999999999
Q ss_pred cCCCC---CCHHHHHHHHHHHhhCCCEEEEeeeeccccCCCCCCC-CcCcCCCCCCCCCCCCCcccCCCCCccccCCCCC
Q 021281 82 LNSSY---GSEHLLKALLHKMKQHKVRAMADIVINHRVGTTQGHG-GKYNRYDGIPLSWDEHAVTSCTGGLGNGSTGDNF 157 (314)
Q Consensus 82 id~~~---Gt~~df~~lv~~ah~~Gi~VilD~V~NH~~~~~~~~~-~~y~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (314)
|+|+| |+.++||+||++||++||+||||+|+||++..+.... ..+..... ..|... .....+.....++
T Consensus 234 ~d~~y~~~g~~~efk~LV~~~H~~GI~VIlDvV~NHt~~~~~~~~~~~~~~~d~--~~yy~~--~~~~~~~~~~~~g--- 306 (688)
T TIGR02100 234 PEPRYLASGQVAEFKTMVRALHDAGIEVILDVVYNHTAEGNELGPTLSFRGIDN--ASYYRL--QPDDKRYYINDTG--- 306 (688)
T ss_pred cChhhcCCCCHHHHHHHHHHHHHCCCEEEEEECcCCccCcCCCCCcccccCCCC--CcceEe--cCCCCceecCCCC---
Confidence 99999 6789999999999999999999999999998654211 11111111 011000 0000011011122
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHhCCCCEEEeccCCCCC---------HHHHHHHHHh-hC-CCeEEEcccCCCCCC
Q 021281 158 HGVPNIDHTQHFVRKDIIAWLRWLRNTVGFQDFRFDFARGYS---------AKYVKEYIEG-AR-PIFSVGEYWDSCNYN 226 (314)
Q Consensus 158 ~~~~dln~~~p~v~~~l~~~~~~w~~~~gvDGfRlDaa~~i~---------~~f~~~~~~~-~~-~~~~~gE~~~~~~y~ 226 (314)
-.++||+++|+||++|++++++|++++||||||+|++..++ .+|++++.+. +. ..+++||.|+...
T Consensus 307 -~gn~ln~~~p~vr~~i~d~l~~W~~e~gIDGfR~D~a~~l~~~~~~~~~~~~~~~~i~~d~~~~~~~ligE~W~~~~-- 383 (688)
T TIGR02100 307 -TGNTLNLSHPRVLQMVMDSLRYWVTEMHVDGFRFDLATTLGRELYGFDMLSGFFTAIRQDPVLAQVKLIAEPWDIGP-- 383 (688)
T ss_pred -ccccccCCCHHHHHHHHHHHHHHHHHcCCcEEEEechhhhccccCCCcccHHHHHHHHhCcccCCeEEEEeeecCCC--
Confidence 24689999999999999999999999999999999999876 3677777763 22 3689999998621
Q ss_pred CCCCCCccchhHHHHhhhhccCCCcceeeChhhHHHHHHHHccc---hhHHHhhhCCCCCCc---cccCCceeeccCCCC
Q 021281 227 SHGLDYNQDSHRQRIINWIDGTGQLSAAFDFTTKGILQEAVKGQ---FWRLRDAQGKPPGVM---GWWPSRAVTFLDNHD 300 (314)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~df~l~~~l~~~~~g~---~~~l~~~~~~~~~~~---~~~p~~~v~F~~NHD 300 (314)
..+ . +.......+.|+..|+..+++.++|. ...+...+.....+. ...|...|+||++||
T Consensus 384 ---~~~-------~----~~~~~~~~~~~Nd~frd~ir~f~~g~~~~~~~~~~~l~gs~~~~~~~~~~~~~~iNyv~~HD 449 (688)
T TIGR02100 384 ---GGY-------Q----VGNFPPGWAEWNDRYRDDMRRFWRGDAGMIGELANRLTGSSDLFEHNGRRPWASINFVTAHD 449 (688)
T ss_pred ---Ccc-------c----ccCCCCceEEecHHHHHHHHHHHcCCCCcHHHHHHHHhCCHhhccccCCCcCEEEEEEeCCC
Confidence 000 0 00111124789999999999998764 334544443211111 124668999999999
Q ss_pred CCC
Q 021281 301 TGS 303 (314)
Q Consensus 301 ~~R 303 (314)
+-+
T Consensus 450 ~~t 452 (688)
T TIGR02100 450 GFT 452 (688)
T ss_pred Cch
Confidence 966
No 13
>TIGR02104 pulA_typeI pullulanase, type I. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. This family consists of pullulanases related to the subfamilies described in TIGR02102 and TIGR02103 but having a different domain architecture with shorter sequences. Members are called type I pullulanases.
Probab=100.00 E-value=6.8e-39 Score=323.37 Aligned_cols=259 Identities=19% Similarity=0.232 Sum_probs=176.4
Q ss_pred CceeEEEEeeCCCCC--------CchHHHHHH-----------hhhHHHHcCCCEEEeCCCCCCCC----------CCCC
Q 021281 24 GREILFQGFNWESCK--------HDWWRNLER-----------KVPDISKSGFTSVWLPPATHSFA----------PEGY 74 (314)
Q Consensus 24 ~~~~i~q~F~w~~~~--------~g~~~gi~~-----------~ldyl~~lG~~~I~l~Pi~~~~~----------~~gY 74 (314)
.+.|||+++..++.. .|+|.++++ +|+||++||||+|||+||++..+ +|||
T Consensus 126 ~~~vIYElhv~~ft~~~~~~~~~~G~f~~~~e~~~~~~~g~~~~LdyL~~LGvt~I~L~Pi~~~~~~~~~~~~~~~~wGY 205 (605)
T TIGR02104 126 EDAIIYELHIRDFSIHENSGVKNKGKYLGLTETGTKGPNGVSTGLDYLKELGVTHVQLLPVFDFAGVDEEDPNNAYNWGY 205 (605)
T ss_pred hHcEEEEEecchhccCCCCCcCCCCceeeeeccCccccccchhHHHHHHHcCCCEEEeCCcccccccccccCCCCCCCCC
Confidence 357999999986642 256666665 49999999999999999998753 4999
Q ss_pred CcccCCCcCCCCCC--------HHHHHHHHHHHhhCCCEEEEeeeeccccCCCCCCCCcCcCCCCCCCCCCCCCcccCCC
Q 021281 75 LPQNLYSLNSSYGS--------EHLLKALLHKMKQHKVRAMADIVINHRVGTTQGHGGKYNRYDGIPLSWDEHAVTSCTG 146 (314)
Q Consensus 75 ~~~d~~~id~~~Gt--------~~df~~lv~~ah~~Gi~VilD~V~NH~~~~~~~~~~~y~~f~~~~~~~~~~~~~~~~~ 146 (314)
++.||++++++||+ .++||+||++||++||+||||+|+||++.... . +|.+....|... ...+
T Consensus 206 ~~~~y~~~~~~y~~~p~~~~~~~~efk~lV~~~H~~Gi~VilDvV~NH~~~~~~---~---~f~~~~~~~~~~---~~~~ 276 (605)
T TIGR02104 206 DPLNYNVPEGSYSTNPYDPATRIRELKQMIQALHENGIRVIMDVVYNHTYSREE---S---PFEKTVPGYYYR---YNED 276 (605)
T ss_pred CCccCCCcChhhhcCCCccchHHHHHHHHHHHHHHCCCEEEEEEEcCCccCCCC---C---cccCCCCCeeEE---ECCC
Confidence 99999999999987 58999999999999999999999999985311 1 121100011000 0001
Q ss_pred CCccccCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCCCCEEEeccCCCCCHHHHHHHHHhhC---C-CeEEEcccCC
Q 021281 147 GLGNGSTGDNFHGVPNIDHTQHFVRKDIIAWLRWLRNTVGFQDFRFDFARGYSAKYVKEYIEGAR---P-IFSVGEYWDS 222 (314)
Q Consensus 147 ~~~~~~~~~~~~~~~dln~~~p~v~~~l~~~~~~w~~~~gvDGfRlDaa~~i~~~f~~~~~~~~~---~-~~~~gE~~~~ 222 (314)
+.....++| ..++|+++|+||++|++++++|++++||||||+|++++++.+||+++..+++ | .+++||.|+.
T Consensus 277 g~~~~~~g~----~~~~~~~~~~v~~~i~~~~~~W~~e~~iDGfR~D~~~~~~~~~~~~~~~~~~~~~p~~~ligE~w~~ 352 (605)
T TIGR02104 277 GTLSNGTGV----GNDTASEREMMRKFIVDSVLYWVKEYNIDGFRFDLMGIHDIETMNEIRKALNKIDPNILLYGEGWDL 352 (605)
T ss_pred CCccCCCcc----cCCcccCCHHHHHHHHHHHHHHHHHcCCCEEEEechhcCCHHHHHHHHHHHHhhCCCeEEEEccCCC
Confidence 110011122 2478999999999999999999999999999999999999999999988764 3 6899999986
Q ss_pred CCCCCCCCCCccchhHHHHhhhhccCCCcceeeChhhHHHHHHHH---------ccc---hhHHHhhhCCCCC-----Cc
Q 021281 223 CNYNSHGLDYNQDSHRQRIINWIDGTGQLSAAFDFTTKGILQEAV---------KGQ---FWRLRDAQGKPPG-----VM 285 (314)
Q Consensus 223 ~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~df~l~~~l~~~~---------~g~---~~~l~~~~~~~~~-----~~ 285 (314)
.. .+.... ......+ ... ...+.||+.++.+++... .|. ...+...+..... -.
T Consensus 353 ~~----~~~~~~---~~~~~~~-~~~-~~~~~~n~~~rd~i~~~~~~~~~~~f~~g~~~~~~~l~~~l~~~~~~~~~~~~ 423 (605)
T TIGR02104 353 GT----PLPPEQ---KATKANA-YQM-PGIAFFNDEFRDALKGSVFHLKKKGFVSGNPGTEETVKKGILGSIELDAVKPS 423 (605)
T ss_pred CC----Ccchhh---hhhhhcc-CCC-CceEEECCcchhhhcCCccccccCceecCCCCcHHHHHhheeCChhhcccccc
Confidence 31 000000 0000000 011 125789999999998432 232 1233332221000 01
Q ss_pred cccCCceeeccCCCCCCCC
Q 021281 286 GWWPSRAVTFLDNHDTGST 304 (314)
Q Consensus 286 ~~~p~~~v~F~~NHD~~R~ 304 (314)
...|..+|+|++|||+.|.
T Consensus 424 ~~~p~~~vnyl~~HD~~~l 442 (605)
T TIGR02104 424 ALDPSQSINYVECHDNHTL 442 (605)
T ss_pred cCChhheEEEEEecCCCCH
Confidence 2256689999999999875
No 14
>TIGR01515 branching_enzym alpha-1,4-glucan:alpha-1,4-glucan 6-glycosyltransferase. A sequence from Arabidopsis thaliana, GP|9294564, scores just above trusted, but appears either to contain corrupt sequence or, more likely, to be a pseudogene as some of the conserved catalytic residues common to the alpha amylase family are not conserved here.
Probab=100.00 E-value=3.3e-38 Score=318.48 Aligned_cols=214 Identities=14% Similarity=0.168 Sum_probs=164.3
Q ss_pred eeEEEEeeCCCCCCchHHHHHHhh-hHHHHcCCCEEEeCCCCCCC--CCCCCCcccCCCcCCCCCCHHHHHHHHHHHhhC
Q 021281 26 EILFQGFNWESCKHDWWRNLERKV-PDISKSGFTSVWLPPATHSF--APEGYLPQNLYSLNSSYGSEHLLKALLHKMKQH 102 (314)
Q Consensus 26 ~~i~q~F~w~~~~~g~~~gi~~~l-dyl~~lG~~~I~l~Pi~~~~--~~~gY~~~d~~~id~~~Gt~~df~~lv~~ah~~ 102 (314)
.+||++...++...|+|++|+++| +||++||||+||||||++++ .+|||++.|||+|+++|||+++||+||++||++
T Consensus 139 ~~iYe~hv~~~~~~g~~~~i~~~l~dyl~~LGvt~i~L~Pi~e~~~~~~wGY~~~~y~~~~~~~Gt~~dlk~lV~~~H~~ 218 (613)
T TIGR01515 139 VSIYELHLGSWRHGLSYRELADQLIPYVKELGFTHIELLPVAEHPFDGSWGYQVTGYYAPTSRFGTPDDFMYFVDACHQA 218 (613)
T ss_pred ceEEEEehhhccCCCCHHHHHHHHHHHHHHcCCCEEEECCcccCCCCCCCCCCcccCcccccccCCHHHHHHHHHHHHHC
Confidence 589999998887778999999997 99999999999999999886 579999999999999999999999999999999
Q ss_pred CCEEEEeeeeccccCCCCCCCCcCcCCCCCCCCCCCCCcccCCCCCccccCCCCCCCCCCCCCCCHHHHHHHHHHHHHHH
Q 021281 103 KVRAMADIVINHRVGTTQGHGGKYNRYDGIPLSWDEHAVTSCTGGLGNGSTGDNFHGVPNIDHTQHFVRKDIIAWLRWLR 182 (314)
Q Consensus 103 Gi~VilD~V~NH~~~~~~~~~~~y~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~~p~v~~~l~~~~~~w~ 182 (314)
||+||||+|+||++.++.. +..|.+.+ .|.. .+... .. ....+.++||+++|+||++|++++++|+
T Consensus 219 Gi~VilD~V~NH~~~~~~~----~~~~~~~~-~y~~------~~~~~--~~-~~~w~~~~~~~~~~~Vr~~l~~~~~~W~ 284 (613)
T TIGR01515 219 GIGVILDWVPGHFPKDDHG----LAEFDGTP-LYEH------KDPRD--GE-HWDWGTLIFDYGRPEVRNFLVANALYWA 284 (613)
T ss_pred CCEEEEEecccCcCCccch----hhccCCCc-ceec------cCCcc--Cc-CCCCCCceecCCCHHHHHHHHHHHHHHH
Confidence 9999999999999976542 11222211 1110 00000 00 0112467999999999999999999999
Q ss_pred HhCCCCEEEeccCCCC------------------------CHHHHHHHHHhhC---C-CeEEEcccCCCCCCCCCCCCcc
Q 021281 183 NTVGFQDFRFDFARGY------------------------SAKYVKEYIEGAR---P-IFSVGEYWDSCNYNSHGLDYNQ 234 (314)
Q Consensus 183 ~~~gvDGfRlDaa~~i------------------------~~~f~~~~~~~~~---~-~~~~gE~~~~~~y~~~~~~~~~ 234 (314)
+++||||||||+++++ ..+||+++.+.++ | .+++||.+...+
T Consensus 285 ~ey~iDG~R~D~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~~~v~~~~p~~~liaE~~~~~~---------- 354 (613)
T TIGR01515 285 EFYHIDGLRVDAVASMLYLDYSRDEGEWSPNEDGGRENLEAVDFLRKLNQTVYEAFPGVVTIAEESTEWP---------- 354 (613)
T ss_pred HHhCCcEEEEcCHHHhhhhccccccccccccccCCcCChHHHHHHHHHHHHHHHHCCCeEEEEEeCCCCc----------
Confidence 9999999999998644 2589999988764 4 789999764411
Q ss_pred chhHHHHhhhhccCCCcceeeChhhHHHHHHHH
Q 021281 235 DSHRQRIINWIDGTGQLSAAFDFTTKGILQEAV 267 (314)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~df~l~~~l~~~~ 267 (314)
....+......+++..+++.++..+...+
T Consensus 355 ----~~~~~~~~gg~gfd~~w~~~~~~~~~~~~ 383 (613)
T TIGR01515 355 ----GVTRPTDEGGLGFHYKWNMGWMHDTLDYM 383 (613)
T ss_pred ----cccccccCCcCCcCeeeCchHHHHHHHHH
Confidence 01112222222577888888888887776
No 15
>PRK13840 sucrose phosphorylase; Provisional
Probab=100.00 E-value=4.3e-38 Score=306.14 Aligned_cols=245 Identities=17% Similarity=0.153 Sum_probs=183.6
Q ss_pred eeEEEEeeCCCCCCchHHHHHHhhh-HHHHcCCCEEEeCCCCC-CC-CCCCCCcccCCCcCCCCCCHHHHHHHHHHHhhC
Q 021281 26 EILFQGFNWESCKHDWWRNLERKVP-DISKSGFTSVWLPPATH-SF-APEGYLPQNLYSLNSSYGSEHLLKALLHKMKQH 102 (314)
Q Consensus 26 ~~i~q~F~w~~~~~g~~~gi~~~ld-yl~~lG~~~I~l~Pi~~-~~-~~~gY~~~d~~~id~~~Gt~~df~~lv~~ah~~ 102 (314)
+|+|-.|. |+.++|+++||+++|| ||+++ |++|||+|+|+ ++ +.+||+|.||++|||+|||++||++|++
T Consensus 4 ~~~litY~-Ds~~~GdL~gl~~kLd~yL~~l-v~~vhllPff~psp~sD~GYdv~DY~~VDP~fGt~eDf~~L~~----- 76 (495)
T PRK13840 4 KVQLITYA-DRLGDGGLKSLTALLDGRLDGL-FGGVHILPFFYPIDGADAGFDPIDHTKVDPRLGDWDDVKALGK----- 76 (495)
T ss_pred ceEEEEec-cCCCCCCHhHHHHHHHHHHHHH-hCeEEECCCccCCCCCCCCCCCcChhhcCcccCCHHHHHHHHh-----
Confidence 68888888 6566689999999999 59999 99999999994 43 5799999999999999999999999985
Q ss_pred CCEEEEeeeeccccCCCCCCCC--------cC----cCCCC------CCCCCC----CC--C-c--ccCCCCCccccCCC
Q 021281 103 KVRAMADIVINHRVGTTQGHGG--------KY----NRYDG------IPLSWD----EH--A-V--TSCTGGLGNGSTGD 155 (314)
Q Consensus 103 Gi~VilD~V~NH~~~~~~~~~~--------~y----~~f~~------~~~~~~----~~--~-~--~~~~~~~~~~~~~~ 155 (314)
||+||+|+|+||||..|+|++. .| .+++. +..+|. +. . . ..+.++....+++.
T Consensus 77 giklmlDlV~NHtS~~h~WFqd~l~~~~~s~Y~D~fi~~d~~~~~~~~~~~~~~if~~~~g~~~~~~~~~~~~~~~~w~t 156 (495)
T PRK13840 77 THDIMADLIVNHMSAESPQFQDVLAKGEASEYWPMFLTKDKVFPDGATEEDLAGIYRPRPGLPFTTYTLADGKTRLVWTT 156 (495)
T ss_pred CCeEEEEECCCcCCCCcHHHHHHHHhCCCCCccCeEEECCCCCcCCCCCcccccccCCCCCCcccceEecCCCceEEecc
Confidence 9999999999999999986432 22 11110 001111 00 0 0 01223333334455
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHHhCCCCEEEeccCCCCC-------------HHHHHHHHHhhC--CCeEEEccc
Q 021281 156 NFHGVPNIDHTQHFVRKDIIAWLRWLRNTVGFQDFRFDFARGYS-------------AKYVKEYIEGAR--PIFSVGEYW 220 (314)
Q Consensus 156 ~~~~~~dln~~~p~v~~~l~~~~~~w~~~~gvDGfRlDaa~~i~-------------~~f~~~~~~~~~--~~~~~gE~~ 220 (314)
+...+||||++||+|+++|++++++|+ +.||||||+||+.++. .+||+++...++ ...+++|++
T Consensus 157 F~~~QpDLN~~NP~V~~~i~~il~fwl-~~GVDgfRLDAv~~l~K~~gt~c~~~pe~~~~l~~lr~~~~~~~~~ll~Ei~ 235 (495)
T PRK13840 157 FTPQQIDIDVHSAAGWEYLMSILDRFA-ASHVTLIRLDAAGYAIKKAGTSCFMIPETFEFIDRLAKEARARGMEVLVEIH 235 (495)
T ss_pred CCcccceeCCCCHHHHHHHHHHHHHHH-HCCCCEEEEechhhhhcCCCCCcCCChHHHHHHHHHHHHhhhcCCEEEEeCc
Confidence 678999999999999999999999999 8999999999986432 368888877665 357899987
Q ss_pred CCCCCCCCCCCCccchhHHHHhhhhccCCCcceeeChhhHHHHHHHH-ccchhHHHhhhCCCCCCccccCCceeeccCCC
Q 021281 221 DSCNYNSHGLDYNQDSHRQRIINWIDGTGQLSAAFDFTTKGILQEAV-KGQFWRLRDAQGKPPGVMGWWPSRAVTFLDNH 299 (314)
Q Consensus 221 ~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~df~l~~~l~~~~-~g~~~~l~~~~~~~~~~~~~~p~~~v~F~~NH 299 (314)
... . .. ....+++.++|||+|...+..++ .|+...|..++.. .|...++|++||
T Consensus 236 ~y~--~-~~---------------~~~~~e~~~vYnF~Lp~ll~~aL~~~~~~~L~~~l~~-------~p~~~~n~L~~H 290 (495)
T PRK13840 236 SYY--K-TQ---------------IEIAKKVDRVYDFALPPLILHTLFTGDVEALAHWLEI-------RPRNAVTVLDTH 290 (495)
T ss_pred ccc--C-cc---------------ccccccccEEecchhhHHHHHHHHhCCchHHHHHHHh-------CCCccEEeeecC
Confidence 531 0 00 00112578999999999999988 7777777766541 366678999999
Q ss_pred CCCC
Q 021281 300 DTGS 303 (314)
Q Consensus 300 D~~R 303 (314)
|.-.
T Consensus 291 DgIg 294 (495)
T PRK13840 291 DGIG 294 (495)
T ss_pred CCCC
Confidence 9754
No 16
>PRK03705 glycogen debranching enzyme; Provisional
Probab=100.00 E-value=2.9e-37 Score=311.57 Aligned_cols=252 Identities=17% Similarity=0.251 Sum_probs=175.9
Q ss_pred CceeEEEEeeCCCCC---------CchHHHHHH--hhhHHHHcCCCEEEeCCCCCCC-----------CCCCCCcccCCC
Q 021281 24 GREILFQGFNWESCK---------HDWWRNLER--KVPDISKSGFTSVWLPPATHSF-----------APEGYLPQNLYS 81 (314)
Q Consensus 24 ~~~~i~q~F~w~~~~---------~g~~~gi~~--~ldyl~~lG~~~I~l~Pi~~~~-----------~~~gY~~~d~~~ 81 (314)
.+.|||++...++.. .|+|+++++ +|+|||+||||+|||+||++.. .+|||+|.|||+
T Consensus 149 ~~~vIYE~hvr~ft~~~~~~~~~~~Gtf~g~~~~~~LdYLk~LGvt~I~L~Pv~~~~~~~~~~~~g~~~ywGYd~~~yfa 228 (658)
T PRK03705 149 GSTVIYEAHVRGLTYLHPEIPVEIRGTYAALGHPVMIAYLKQLGITALELLPVAQFASEPRLQRMGLSNYWGYNPLAMFA 228 (658)
T ss_pred cccEEEEEehhhhcccCCCCCccccccHHHhhcccchHHHHHcCCCEEEecCcccCCCcccccccccccccCcccccccc
Confidence 468999999987653 169999996 5999999999999999999864 368999999999
Q ss_pred cCCCCCCH-----HHHHHHHHHHhhCCCEEEEeeeeccccCCCCCCCCcCcCCC---CCCCCCCCCCcccCCCCCccccC
Q 021281 82 LNSSYGSE-----HLLKALLHKMKQHKVRAMADIVINHRVGTTQGHGGKYNRYD---GIPLSWDEHAVTSCTGGLGNGST 153 (314)
Q Consensus 82 id~~~Gt~-----~df~~lv~~ah~~Gi~VilD~V~NH~~~~~~~~~~~y~~f~---~~~~~~~~~~~~~~~~~~~~~~~ 153 (314)
++|+|||. ++||+||++||++||+||||+|+||++..... +.+..+. ...+.|.. .++....++
T Consensus 229 ~d~~ygt~~~~~~~efk~LV~~~H~~GI~VIlDvV~NHt~~~~~~--~~~~~~~~~d~~~yy~~~------~~g~~~~~~ 300 (658)
T PRK03705 229 LDPAYASGPETALDEFRDAVKALHKAGIEVILDVVFNHSAELDLD--GPTLSLRGIDNRSYYWIR------EDGDYHNWT 300 (658)
T ss_pred cccccCCCCcchHHHHHHHHHHHHHCCCEEEEEEcccCccCcCCC--CcchhcccCCCccceEEC------CCCCcCCCC
Confidence 99999985 79999999999999999999999999974321 1111111 11111111 011111122
Q ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCCCCEEEeccCCCCC--HHHHHH--HHHhhC------CCeEEEcccCCC
Q 021281 154 GDNFHGVPNIDHTQHFVRKDIIAWLRWLRNTVGFQDFRFDFARGYS--AKYVKE--YIEGAR------PIFSVGEYWDSC 223 (314)
Q Consensus 154 ~~~~~~~~dln~~~p~v~~~l~~~~~~w~~~~gvDGfRlDaa~~i~--~~f~~~--~~~~~~------~~~~~gE~~~~~ 223 (314)
+| .++||+++|+||++|++++++|++++||||||+|+|.++. +.|++. +.++++ ...++||.|+..
T Consensus 301 g~----g~~ln~~~p~Vr~~iid~l~~W~~e~gVDGFRfD~a~~l~~~~~~~~~~~~~~ai~~d~vl~~~~ligE~Wd~~ 376 (658)
T PRK03705 301 GC----GNTLNLSHPAVVDWAIDCLRYWVETCHVDGFRFDLATVLGRTPEFRQDAPLFTAIQNDPVLSQVKLIAEPWDIG 376 (658)
T ss_pred Cc----cCcccCCCHHHHHHHHHHHHHHHHHhCCCEEEEEcHhhhCcCcccchhhHHHHHHhhCccccceEEEEecccCC
Confidence 22 4789999999999999999999999999999999999886 234432 333332 368899999862
Q ss_pred CCCCCCCCCccchhHHHHhhhhccCCCcceeeChhhHHHHHHHHccc---hhHHHhhhCCCCCC---ccccCCceeeccC
Q 021281 224 NYNSHGLDYNQDSHRQRIINWIDGTGQLSAAFDFTTKGILQEAVKGQ---FWRLRDAQGKPPGV---MGWWPSRAVTFLD 297 (314)
Q Consensus 224 ~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~df~l~~~l~~~~~g~---~~~l~~~~~~~~~~---~~~~p~~~v~F~~ 297 (314)
. ..| ++ ......-+.|+..|+..++..+.+. ...+...+.....+ ....|...|+||+
T Consensus 377 ~-----~~~-------~~----g~~~~~~~~~Nd~fRd~ir~f~~~~~~~~~~~~~~l~gs~~~~~~~~~~p~~siNyv~ 440 (658)
T PRK03705 377 P-----GGY-------QV----GNFPPPFAEWNDHFRDAARRFWLHGDLPLGEFAGRFAASSDVFKRNGRLPSASINLVT 440 (658)
T ss_pred C-----Chh-------hh----cCCCcceEEEchHHHHHHHHHHccCCCcHHHHHHHHhcchhhccccCCCCCeEEEEEE
Confidence 1 000 00 1111135789999999999997432 22222222211111 1235778999999
Q ss_pred CCCCCC
Q 021281 298 NHDTGS 303 (314)
Q Consensus 298 NHD~~R 303 (314)
+||+-+
T Consensus 441 ~HD~~T 446 (658)
T PRK03705 441 AHDGFT 446 (658)
T ss_pred eCCCcc
Confidence 999854
No 17
>PRK12313 glycogen branching enzyme; Provisional
Probab=100.00 E-value=4.2e-37 Score=312.00 Aligned_cols=214 Identities=15% Similarity=0.189 Sum_probs=160.5
Q ss_pred ceeEEEEeeCCCCCC-----chHHHHHHhh-hHHHHcCCCEEEeCCCCCCC--CCCCCCcccCCCcCCCCCCHHHHHHHH
Q 021281 25 REILFQGFNWESCKH-----DWWRNLERKV-PDISKSGFTSVWLPPATHSF--APEGYLPQNLYSLNSSYGSEHLLKALL 96 (314)
Q Consensus 25 ~~~i~q~F~w~~~~~-----g~~~gi~~~l-dyl~~lG~~~I~l~Pi~~~~--~~~gY~~~d~~~id~~~Gt~~df~~lv 96 (314)
.-+|||+...++..+ |+|++|+++| +||++||||+|||+||++++ .+|||++.||++|+|+|||+++||+||
T Consensus 147 ~~~iYe~hv~~f~~~~~~~~g~~~~~~~~ll~yl~~LGv~~i~L~Pi~~~~~~~~~GY~~~~y~~i~~~~Gt~~d~k~lv 226 (633)
T PRK12313 147 PISIYEVHLGSWKRNEDGRPLSYRELADELIPYVKEMGYTHVEFMPLMEHPLDGSWGYQLTGYFAPTSRYGTPEDFMYLV 226 (633)
T ss_pred CceEEEEehhccccCCCCCccCHHHHHHHHHHHHHHcCCCEEEeCchhcCCCCCCCCCCCcCcCcCCCCCCCHHHHHHHH
Confidence 369999999865432 5999999995 99999999999999999887 579999999999999999999999999
Q ss_pred HHHhhCCCEEEEeeeeccccCCCCCCCCcCcCCCCCCCCCCCCCcccCCCCCccccCCCCCCCCCCCCCCCHHHHHHHHH
Q 021281 97 HKMKQHKVRAMADIVINHRVGTTQGHGGKYNRYDGIPLSWDEHAVTSCTGGLGNGSTGDNFHGVPNIDHTQHFVRKDIIA 176 (314)
Q Consensus 97 ~~ah~~Gi~VilD~V~NH~~~~~~~~~~~y~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~~p~v~~~l~~ 176 (314)
++||++||+||||+|+||++.++.. ...|.+. ..+ .+.++... ....| +.++||++||+||++|++
T Consensus 227 ~~~H~~Gi~VilD~V~nH~~~~~~~----~~~~~~~-~~~------~~~~~~~~--~~~~w-~~~~~n~~~~~vr~~l~~ 292 (633)
T PRK12313 227 DALHQNGIGVILDWVPGHFPKDDDG----LAYFDGT-PLY------EYQDPRRA--ENPDW-GALNFDLGKNEVRSFLIS 292 (633)
T ss_pred HHHHHCCCEEEEEECCCCCCCCccc----ccccCCC-cce------eecCCCCC--cCCCC-CCcccCCCCHHHHHHHHH
Confidence 9999999999999999999986542 1122221 011 11111000 00012 347899999999999999
Q ss_pred HHHHHHHhCCCCEEEeccCCCC-----------------------CHHHHHHHHHhhC---C-CeEEEcccCCCCCCCCC
Q 021281 177 WLRWLRNTVGFQDFRFDFARGY-----------------------SAKYVKEYIEGAR---P-IFSVGEYWDSCNYNSHG 229 (314)
Q Consensus 177 ~~~~w~~~~gvDGfRlDaa~~i-----------------------~~~f~~~~~~~~~---~-~~~~gE~~~~~~y~~~~ 229 (314)
++++|++++||||||||++.++ +.+||+++.+.++ | .+++||.+...+
T Consensus 293 ~~~~W~~~~~iDG~R~D~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~fl~~~~~~v~~~~p~~~liaE~~~~~~----- 367 (633)
T PRK12313 293 SALFWLDEYHLDGLRVDAVSNMLYLDYDEEGEWTPNKYGGRENLEAIYFLQKLNEVVYLEHPDVLMIAEESTAWP----- 367 (633)
T ss_pred HHHHHHHHhCCcEEEEcChhhhhhcccccccCcCCcccCCCCCcHHHHHHHHHHHHHHHHCCCeEEEEECCCCCc-----
Confidence 9999999999999999998643 2589999987764 4 689999765421
Q ss_pred CCCccchhHHHHh-hhhccCCCcceeeChhhHHHHHHHH
Q 021281 230 LDYNQDSHRQRII-NWIDGTGQLSAAFDFTTKGILQEAV 267 (314)
Q Consensus 230 ~~~~~~~~~~~~~-~~~~~~~~~~~~~df~l~~~l~~~~ 267 (314)
.+. +.....-+++..++..+...+...+
T Consensus 368 ----------~~~~~~~~gg~gfd~~w~~~~~~~~~~~~ 396 (633)
T PRK12313 368 ----------KVTGPVEVGGLGFDYKWNMGWMNDTLRYF 396 (633)
T ss_pred ----------cccccccCCCCCcCceeCcHHHHHHHHHh
Confidence 011 1111112467778888888777766
No 18
>TIGR02102 pullulan_Gpos pullulanase, extracellular, Gram-positive. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. In contrast, a glycogen debranching enzyme such GlgX, homologous to this family, can release glucose at alpha,1-6 linkages from glycogen first subjected to limit degradation by phosphorylase. Characterized members of this family include a surface-located pullulanase from Streptococcus pneumoniae (PubMed:11083842) and an extracellular bifunctional amylase/pullulanase with C-terminal pullulanase activity (PubMed:8798645).
Probab=100.00 E-value=1.1e-36 Score=318.42 Aligned_cols=259 Identities=18% Similarity=0.282 Sum_probs=182.8
Q ss_pred CCceeEEEEeeCCCCC-----------CchHHHHHHhhhHHHHcCCCEEEeCCCCCC--------------------CCC
Q 021281 23 NGREILFQGFNWESCK-----------HDWWRNLERKVPDISKSGFTSVWLPPATHS--------------------FAP 71 (314)
Q Consensus 23 ~~~~~i~q~F~w~~~~-----------~g~~~gi~~~ldyl~~lG~~~I~l~Pi~~~--------------------~~~ 71 (314)
..+.|||+++.+++.. -|+|++++++|+||++||||+|||+||++. ..+
T Consensus 449 ~~d~vIYElHVrdFt~d~~~~~~~~~~~Gtf~gl~ekLdYLkeLGVT~I~LmPv~d~~~~~e~~~~~~~~~~~~~~~~yn 528 (1111)
T TIGR02102 449 REDAIIYEAHVRDFTSDPAIAGDLTAQFGTFAAFVEKLDYLQDLGVTHIQLLPVLSYFFVNEFKNKERMLDYASSNTNYN 528 (1111)
T ss_pred ccceEEEEEechhhCcCCCCCcccccCCcCHHHHHHhHHHHHHcCCCEEEEcCccccccccccccccccccccccccccc
Confidence 3468999999997653 279999999999999999999999999851 024
Q ss_pred CCCCcccCCCcCCCCCC--------HHHHHHHHHHHhhCCCEEEEeeeeccccCCCCCCCCcCcCCCCCCCCCCCCCccc
Q 021281 72 EGYLPQNLYSLNSSYGS--------EHLLKALLHKMKQHKVRAMADIVINHRVGTTQGHGGKYNRYDGIPLSWDEHAVTS 143 (314)
Q Consensus 72 ~gY~~~d~~~id~~~Gt--------~~df~~lv~~ah~~Gi~VilD~V~NH~~~~~~~~~~~y~~f~~~~~~~~~~~~~~ 143 (314)
|||+|.+|++++++||+ .++||+||++||++||+||||||+||++..++ |......|... ..
T Consensus 529 WGYdp~~yfape~~Ygtdp~dp~~ri~EfK~LV~alH~~GI~VILDVVyNHt~~~~~--------f~~~~p~Yy~~--~~ 598 (1111)
T TIGR02102 529 WGYDPQNYFALSGMYSEDPKDPELRIAEFKNLINEIHKRGMGVILDVVYNHTAKVYI--------FEDLEPNYYHF--MD 598 (1111)
T ss_pred cCCCcCcCcccccccccCCcCccccHHHHHHHHHHHHHCCCEEEEeccccccccccc--------ccccCCCceEe--eC
Confidence 99999999999999998 48999999999999999999999999998653 11100001000 00
Q ss_pred CCCCCccccCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCCCCEEEeccCCCCCHHHHHHHHHhh---CC-CeEEEcc
Q 021281 144 CTGGLGNGSTGDNFHGVPNIDHTQHFVRKDIIAWLRWLRNTVGFQDFRFDFARGYSAKYVKEYIEGA---RP-IFSVGEY 219 (314)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~dln~~~p~v~~~l~~~~~~w~~~~gvDGfRlDaa~~i~~~f~~~~~~~~---~~-~~~~gE~ 219 (314)
.++. ... ..+..+++.++|.||++|++++++|+++|||||||||++.+++.+++..+..++ +| .+++||.
T Consensus 599 -~~G~--~~~---~~~g~~l~~e~~~vrk~iiDsl~yWv~ey~VDGFRfDl~g~~d~~~~~~~~~~l~~~dP~~~liGE~ 672 (1111)
T TIGR02102 599 -ADGT--PRT---SFGGGRLGTTHEMSRRILVDSIKYLVDEFKVDGFRFDMMGDHDAASIEIAYKEAKAINPNIIMIGEG 672 (1111)
T ss_pred -CCCC--ccc---ccCCCCCCcCCHHHHHHHHHHHHHHHHhcCCcEEEEeccccCCHHHHHHHHHHHHHhCcCEEEEEec
Confidence 0111 000 112357899999999999999999999999999999999999999998887664 34 6889999
Q ss_pred cCCCCCCCCCCCCccchhHHHHhhhhccCCCcceeeChhhHHHHHHHH---------ccch---hHHHhhhCCCCC-Ccc
Q 021281 220 WDSCNYNSHGLDYNQDSHRQRIINWIDGTGQLSAAFDFTTKGILQEAV---------KGQF---WRLRDAQGKPPG-VMG 286 (314)
Q Consensus 220 ~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~df~l~~~l~~~~---------~g~~---~~l~~~~~~~~~-~~~ 286 (314)
|+... +...+... .....|+..+. ..++|+..++..++..+ +|.. ..+...+..... ...
T Consensus 673 W~~~~---g~~~~~~~---~~~~~~~~~~~-~ig~FnD~~Rd~irg~~~~~~~~gfi~G~~~~~~~l~~~i~g~~~~~~~ 745 (1111)
T TIGR02102 673 WRTYA---GDEGDPVQ---AADQDWMKYTE-TVGVFSDDIRNELKSGFPNEGQPAFITGGARNVQGIFKNIKAQPHNFEA 745 (1111)
T ss_pred ccccC---CCCccccc---ccchhhHhcCC-cccEecHHHHHHHhcccccccccccccCCcccHHHHHHhhcCCcccccc
Confidence 98510 11111100 01123333222 36889999999998543 2322 223322221111 112
Q ss_pred ccCCceeeccCCCCCCCC
Q 021281 287 WWPSRAVTFLDNHDTGST 304 (314)
Q Consensus 287 ~~p~~~v~F~~NHD~~R~ 304 (314)
..|...|+||+|||+.+.
T Consensus 746 ~~P~~~VnYV~aHDn~TL 763 (1111)
T TIGR02102 746 DSPGDVVQYIAAHDNLTL 763 (1111)
T ss_pred CCcccEEEEEecCCCCch
Confidence 368899999999999875
No 19
>PRK05402 glycogen branching enzyme; Provisional
Probab=100.00 E-value=1.7e-36 Score=311.29 Aligned_cols=183 Identities=19% Similarity=0.286 Sum_probs=143.7
Q ss_pred ceeEEEEeeCCCCCC------chHHHHHHhh-hHHHHcCCCEEEeCCCCCCC--CCCCCCcccCCCcCCCCCCHHHHHHH
Q 021281 25 REILFQGFNWESCKH------DWWRNLERKV-PDISKSGFTSVWLPPATHSF--APEGYLPQNLYSLNSSYGSEHLLKAL 95 (314)
Q Consensus 25 ~~~i~q~F~w~~~~~------g~~~gi~~~l-dyl~~lG~~~I~l~Pi~~~~--~~~gY~~~d~~~id~~~Gt~~df~~l 95 (314)
..+||++...++... |+|++|+++| +|||+||||+||||||++.+ .+|||++.||++|+|+|||+++||+|
T Consensus 241 ~~~iYe~hv~~f~~~~~~~~~g~~~~i~~~l~~ylk~LGv~~i~L~Pi~e~~~~~~~GY~~~~y~ai~~~~Gt~~dfk~l 320 (726)
T PRK05402 241 PISIYEVHLGSWRRHEDGGRFLSYRELADQLIPYVKEMGFTHVELLPIAEHPFDGSWGYQPTGYYAPTSRFGTPDDFRYF 320 (726)
T ss_pred CcEEEEEehhhhccCCCCCcccCHHHHHHHHHHHHHHcCCCEEEECCcccCCCCCCCCCCcccCCCcCcccCCHHHHHHH
Confidence 368999999776532 5999999996 99999999999999999876 47999999999999999999999999
Q ss_pred HHHHhhCCCEEEEeeeeccccCCCCCCCCcCcCCCCCCCCCCCCCcccCCCCCccccCCCCCCCCCCCCCCCHHHHHHHH
Q 021281 96 LHKMKQHKVRAMADIVINHRVGTTQGHGGKYNRYDGIPLSWDEHAVTSCTGGLGNGSTGDNFHGVPNIDHTQHFVRKDII 175 (314)
Q Consensus 96 v~~ah~~Gi~VilD~V~NH~~~~~~~~~~~y~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~~p~v~~~l~ 175 (314)
|++||++||+||||+|+||++.++.+ +..|++......+.. ..+.. ..| +...+|+++|+||++|+
T Consensus 321 V~~~H~~Gi~VilD~V~NH~~~~~~~----~~~~~~~~~y~~~~~----~~~~~-----~~w-~~~~~n~~~~~v~~~l~ 386 (726)
T PRK05402 321 VDACHQAGIGVILDWVPAHFPKDAHG----LARFDGTALYEHADP----REGEH-----PDW-GTLIFNYGRNEVRNFLV 386 (726)
T ss_pred HHHHHHCCCEEEEEECCCCCCCCccc----hhccCCCcceeccCC----cCCcc-----CCC-CCccccCCCHHHHHHHH
Confidence 99999999999999999999876542 222322110000000 00000 112 23478999999999999
Q ss_pred HHHHHHHHhCCCCEEEeccCCCC------------------------CHHHHHHHHHhhC---C-CeEEEcccC
Q 021281 176 AWLRWLRNTVGFQDFRFDFARGY------------------------SAKYVKEYIEGAR---P-IFSVGEYWD 221 (314)
Q Consensus 176 ~~~~~w~~~~gvDGfRlDaa~~i------------------------~~~f~~~~~~~~~---~-~~~~gE~~~ 221 (314)
+++++|++++||||||||++.++ ..+||+++.+.++ | .+++||.+.
T Consensus 387 ~~~~~W~~e~~iDG~R~D~v~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~fl~~~~~~~~~~~p~~~liaE~~~ 460 (726)
T PRK05402 387 ANALYWLEEFHIDGLRVDAVASMLYLDYSRKEGEWIPNIYGGRENLEAIDFLRELNAVVHEEFPGALTIAEEST 460 (726)
T ss_pred HHHHHHHHHhCCcEEEECCHHHhhhccccccccccccccccCcCCHHHHHHHHHHHHHHHHHCCCeEEEEECCC
Confidence 99999999999999999998654 3589999988764 4 689999654
No 20
>PRK14510 putative bifunctional 4-alpha-glucanotransferase/glycogen debranching enzyme; Provisional
Probab=100.00 E-value=5.2e-36 Score=319.47 Aligned_cols=258 Identities=15% Similarity=0.145 Sum_probs=176.5
Q ss_pred CceeEEEEeeCCCCC-------C--chHHHHH--HhhhHHHHcCCCEEEeCCCCCCC-----------CCCCCCcccCCC
Q 021281 24 GREILFQGFNWESCK-------H--DWWRNLE--RKVPDISKSGFTSVWLPPATHSF-----------APEGYLPQNLYS 81 (314)
Q Consensus 24 ~~~~i~q~F~w~~~~-------~--g~~~gi~--~~ldyl~~lG~~~I~l~Pi~~~~-----------~~~gY~~~d~~~ 81 (314)
.+.|||++....+.. + |++++|. ++|+|||+||||+|||+||+++. .+|||++.||++
T Consensus 157 ~d~vIYE~hvr~ft~~~~~~gg~~~Gt~~~l~~~~~i~yLk~LGvt~I~L~Pi~~~~~~~~~~~~g~~~yWGY~~~~yfa 236 (1221)
T PRK14510 157 DDSPLYEMNVRGFTLRHDFFPGNLRGTFAKLAAPEAISYLKKLGVSIVELNPIFASVDEHHLPQLGLSNYWGYNTVAFLA 236 (1221)
T ss_pred ccCeEEEEccchhhccCCCCCcccCcHHhhcCCchhHHHHHHcCCCEEEeCCccccCcccccccccCcCcCCCCCCCCCC
Confidence 367999988765432 1 4666666 55679999999999999999775 357999999999
Q ss_pred cCCCCC--CHHHHHHHHHHHhhCCCEEEEeeeeccccCCCCCCCC-cCcCCCCCCCCCCCCCcccCCCCCccccCCCCCC
Q 021281 82 LNSSYG--SEHLLKALLHKMKQHKVRAMADIVINHRVGTTQGHGG-KYNRYDGIPLSWDEHAVTSCTGGLGNGSTGDNFH 158 (314)
Q Consensus 82 id~~~G--t~~df~~lv~~ah~~Gi~VilD~V~NH~~~~~~~~~~-~y~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (314)
++|+|| +.++||+||++||++||+||||+|+||++.++..... .+..+... ..+... ....+....+++| .
T Consensus 237 ~dp~yg~~~~~efk~lV~~~H~~GI~VILDvV~NHt~~~~~~~p~~~~~~~d~~-~yy~~~---~~~~~~y~~~~G~--g 310 (1221)
T PRK14510 237 PDPRLAPGGEEEFAQAIKEAQSAGIAVILDVVFNHTGESNHYGPTLSAYGSDNS-PYYRLE---PGNPKEYENWWGC--G 310 (1221)
T ss_pred cChhhccCcHHHHHHHHHHHHHCCCEEEEEEccccccCCCCCCCcccccCCCCC-CceEec---CCCCCcccCCCCC--C
Confidence 999999 9999999999999999999999999999987542110 00001110 001100 0000000111222 1
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHhCCCCEEEeccCCCC---CHHHHHHHHHhh---CC------CeEEEcccCCCC--
Q 021281 159 GVPNIDHTQHFVRKDIIAWLRWLRNTVGFQDFRFDFARGY---SAKYVKEYIEGA---RP------IFSVGEYWDSCN-- 224 (314)
Q Consensus 159 ~~~dln~~~p~v~~~l~~~~~~w~~~~gvDGfRlDaa~~i---~~~f~~~~~~~~---~~------~~~~gE~~~~~~-- 224 (314)
..+|+++|+|++++++++++|++ +||||||||+|.++ +.+||+++...+ ++ .+++||.|+...
T Consensus 311 --n~~n~~~p~v~~~i~d~lr~Wv~-~gVDGfRfDla~~l~r~~~~f~~~~~~~l~ai~~d~~l~~~~ligE~Wd~~~~~ 387 (1221)
T PRK14510 311 --NLPNLERPFILRLPMDVLRSWAK-RGVDGFRLDLADELAREPDGFIDEFRQFLKAMDQDPVLRRLKMIAEVWDDGLGG 387 (1221)
T ss_pred --CccccCCHHHHHHHHHHHHHHHH-hCCCEEEEechhhhccCccchHHHHHHHHHHhCCCcCcccCcEEEecccCCCCc
Confidence 23577799999999999999996 99999999999999 899998866543 33 345999998621
Q ss_pred CCCCCCCCccchhHHHHhhhhccCCCcceeeChhhHHHHHHHHccch---hHHHhhhCCCCCCc---cccCCceeeccCC
Q 021281 225 YNSHGLDYNQDSHRQRIINWIDGTGQLSAAFDFTTKGILQEAVKGQF---WRLRDAQGKPPGVM---GWWPSRAVTFLDN 298 (314)
Q Consensus 225 y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~df~l~~~l~~~~~g~~---~~l~~~~~~~~~~~---~~~p~~~v~F~~N 298 (314)
|+.|. + ....+.+|++|+..++++++|+. ..+...+.....+. ...|...|+||+|
T Consensus 388 ~~~g~--------------f----~~~~~~~N~~frd~vr~f~~g~~~~~~~~a~~l~gs~d~~~~~~~~~~~~iNfi~~ 449 (1221)
T PRK14510 388 YQYGK--------------F----PQYWGEWNDPLRDIMRRFWLGDIGMAGELATRLAGSADIFPHRRRNFSRSINFITA 449 (1221)
T ss_pred cccCC--------------C----CcceeeeccHHHHHHHHHhcCCCchHHHHHHHHhCcHhhcCccCCCcccceEEEee
Confidence 11000 0 01136799999999999997652 33443332111111 1245678999999
Q ss_pred CCCCCCCCCC
Q 021281 299 HDTGSTQVPH 308 (314)
Q Consensus 299 HD~~R~~~~~ 308 (314)
||+.|...+.
T Consensus 450 HD~~rl~dl~ 459 (1221)
T PRK14510 450 HDGFTLLDLV 459 (1221)
T ss_pred CCchHHHHHh
Confidence 9998855433
No 21
>TIGR03852 sucrose_gtfA sucrose phosphorylase. In the forward direction, this enzyme uses phosphate to cleave sucrose into D-fructose + alpha-D-glucose 1-phosphate. Characterized representatives from Streptococcus mutans and Bifidobacterium adolescentis represent well-separated branches of a molecular phylogenetic tree. In S. mutans, the region including this gene has been associated with neighboring transporter genes and multiple sugar metabolism.
Probab=100.00 E-value=5.2e-36 Score=289.97 Aligned_cols=241 Identities=18% Similarity=0.154 Sum_probs=178.2
Q ss_pred eeEEEEeeCCCCCCc--hHHHHHHhhhHHHHcCCCEEEeCCCCCCCCCCCCCcccCCCcCCCCCCHHHHHHHHHHHhhCC
Q 021281 26 EILFQGFNWESCKHD--WWRNLERKVPDISKSGFTSVWLPPATHSFAPEGYLPQNLYSLNSSYGSEHLLKALLHKMKQHK 103 (314)
Q Consensus 26 ~~i~q~F~w~~~~~g--~~~gi~~~ldyl~~lG~~~I~l~Pi~~~~~~~gY~~~d~~~id~~~Gt~~df~~lv~~ah~~G 103 (314)
+|++..|. |+.++| +++++.++ ||++ ||++|||+|+|++++++||+|.||++|||+|||++||++|+++
T Consensus 2 ~v~lity~-Ds~g~glgdl~g~l~~--yL~~-~v~~i~LlPffps~sD~GYdv~DY~~VDP~~Gt~~Df~~L~~~----- 72 (470)
T TIGR03852 2 KAMLITYA-DSLGKNLKELNKVLEN--YFKD-AVGGVHLLPFFPSTGDRGFAPMDYTEVDPAFGDWSDVEALSEK----- 72 (470)
T ss_pred CceEEEec-CCCCCChhhHHHHHHH--HHHH-hCCEEEECCCCcCCCCCCcCchhhceeCcccCCHHHHHHHHHh-----
Confidence 57888887 444553 88888877 9999 7999999999999999999999999999999999999999998
Q ss_pred CEEEEeeeeccccCCCCCCCC--------cCcC-CC-------CC-CC--CC----CCC--C---cccCCCCCccccCCC
Q 021281 104 VRAMADIVINHRVGTTQGHGG--------KYNR-YD-------GI-PL--SW----DEH--A---VTSCTGGLGNGSTGD 155 (314)
Q Consensus 104 i~VilD~V~NH~~~~~~~~~~--------~y~~-f~-------~~-~~--~~----~~~--~---~~~~~~~~~~~~~~~ 155 (314)
|+||+|+|+||||..|+|++. .|.. |- .. +. ++ .+. . ...+.++....++..
T Consensus 73 ~kvmlDlV~NHtS~~h~WFq~~~~~~~~s~y~d~fi~~~~~w~~~~~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~w~t 152 (470)
T TIGR03852 73 YYLMFDFMINHISRQSEYYQDFLEKKDNSKYKDLFIRYKDFWPNGRPTQEDVDLIYKRKDRAPYQEVTFADGSTEKVWNT 152 (470)
T ss_pred hhHHhhhcccccccchHHHHHHHhcCCCCCccceEEecccccCCCCccccccccccCCCCCCCCCceEEcCCCCeEEEcc
Confidence 799999999999999986432 2211 11 00 00 00 000 0 011223333445667
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHHhCCCCEEEeccCC-----------CCCH---HHHHHHHHhhC--CCeEEEcc
Q 021281 156 NFHGVPNIDHTQHFVRKDIIAWLRWLRNTVGFQDFRFDFAR-----------GYSA---KYVKEYIEGAR--PIFSVGEY 219 (314)
Q Consensus 156 ~~~~~~dln~~~p~v~~~l~~~~~~w~~~~gvDGfRlDaa~-----------~i~~---~f~~~~~~~~~--~~~~~gE~ 219 (314)
+..++||||+.||+|++++.+++++|+ +.||||||+||+. ++.+ ++++.+.+.+. +.++++|+
T Consensus 153 F~~~QpDLN~~np~v~e~i~~il~fwl-~~GvdgfRLDAv~~l~K~~Gt~c~~l~pet~~~l~~~r~~~~~~~~~ll~E~ 231 (470)
T TIGR03852 153 FGEEQIDLDVTSETTKRFIRDNLENLA-EHGASIIRLDAFAYAVKKLGTNDFFVEPEIWELLDEVRDILAPTGAEILPEI 231 (470)
T ss_pred CCccccccCCCCHHHHHHHHHHHHHHH-HcCCCEEEEecchhhcccCCCCcccCChhHHHHHHHHHHHhccCCCEEEeHh
Confidence 789999999999999999999999999 9999999999993 3423 45566665443 47899999
Q ss_pred cCCCCCCCCCCCCccchhHHHHhhhhccCCCcceeeChhhHHHHHHHH-ccchhHHHhhhCCCCCCccccCCceeeccCC
Q 021281 220 WDSCNYNSHGLDYNQDSHRQRIINWIDGTGQLSAAFDFTTKGILQEAV-KGQFWRLRDAQGKPPGVMGWWPSRAVTFLDN 298 (314)
Q Consensus 220 ~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~df~l~~~l~~~~-~g~~~~l~~~~~~~~~~~~~~p~~~v~F~~N 298 (314)
+..-.|. + ...++...+|||++...+.-++ +|+...+.+++. ..|....+|++|
T Consensus 232 ~~~~~~~-----------------~-~~gde~~mvY~F~lppl~l~al~~~~~~~l~~wl~-------~~p~~~~nfL~s 286 (470)
T TIGR03852 232 HEHYTIQ-----------------F-KIAEHGYYVYDFALPMLVLYSLYSGKTNRLADWLR-------KSPMKQFTTLDT 286 (470)
T ss_pred hhhcccc-----------------c-ccccceeEEccCccchhhHHHhhccCHHHHHHHHH-------hCcccceEEeec
Confidence 7531110 0 1113468999999999998887 777777877754 234455799999
Q ss_pred CCC
Q 021281 299 HDT 301 (314)
Q Consensus 299 HD~ 301 (314)
||-
T Consensus 287 HDg 289 (470)
T TIGR03852 287 HDG 289 (470)
T ss_pred CCC
Confidence 995
No 22
>PRK14706 glycogen branching enzyme; Provisional
Probab=100.00 E-value=2.4e-35 Score=297.07 Aligned_cols=249 Identities=14% Similarity=0.098 Sum_probs=174.0
Q ss_pred eeEEEEeeCCCCC--C---chHHHHHHhh-hHHHHcCCCEEEeCCCCCCC--CCCCCCcccCCCcCCCCCCHHHHHHHHH
Q 021281 26 EILFQGFNWESCK--H---DWWRNLERKV-PDISKSGFTSVWLPPATHSF--APEGYLPQNLYSLNSSYGSEHLLKALLH 97 (314)
Q Consensus 26 ~~i~q~F~w~~~~--~---g~~~gi~~~l-dyl~~lG~~~I~l~Pi~~~~--~~~gY~~~d~~~id~~~Gt~~df~~lv~ 97 (314)
.+||++...+... + ++|++++++| +|||+||||+|+||||++.+ .++||++.+||+++++|||+++||+||+
T Consensus 145 ~~IYE~Hvg~f~~~~~g~~~ty~~~~~~l~~ylk~lG~t~velmPv~e~~~~~~wGY~~~~~~~~~~~~g~~~~~~~lv~ 224 (639)
T PRK14706 145 ISIYEVHVGSWARRDDGWFLNYRELAHRLGEYVTYMGYTHVELLGVMEHPFDGSWGYQVTGYYAPTSRLGTPEDFKYLVN 224 (639)
T ss_pred cEEEEEehhhcccCCCCCccCHHHHHHHHHHHHHHcCCCEEEccchhcCCCCCCCCcCcccccccccccCCHHHHHHHHH
Confidence 6999999876532 2 3899999997 89999999999999999875 5799999999999999999999999999
Q ss_pred HHhhCCCEEEEeeeeccccCCCCCCCCcCcCCCCCCCCCCCCCcccCCCCCccccCCCCCCCCCCCCCCCHHHHHHHHHH
Q 021281 98 KMKQHKVRAMADIVINHRVGTTQGHGGKYNRYDGIPLSWDEHAVTSCTGGLGNGSTGDNFHGVPNIDHTQHFVRKDIIAW 177 (314)
Q Consensus 98 ~ah~~Gi~VilD~V~NH~~~~~~~~~~~y~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~~p~v~~~l~~~ 177 (314)
+||++||+||||+|+||++.+..+ ...|++.+. + .+.+... .....|.. ..+|+.+|+||++|+++
T Consensus 225 ~~H~~gi~VilD~v~nH~~~~~~~----l~~~dg~~~-y------~~~~~~~--g~~~~w~~-~~~~~~~~eVr~~l~~~ 290 (639)
T PRK14706 225 HLHGLGIGVILDWVPGHFPTDESG----LAHFDGGPL-Y------EYADPRK--GYHYDWNT-YIFDYGRNEVVMFLIGS 290 (639)
T ss_pred HHHHCCCEEEEEecccccCcchhh----hhccCCCcc-e------eccCCcC--CcCCCCCC-cccCCCCHHHHHHHHHH
Confidence 999999999999999999886432 112222110 0 0001000 00112322 34899999999999999
Q ss_pred HHHHHHhCCCCEEEeccCCCC----------------------CHHHHHHHHHhhC---C-CeEEEcccCCCCCCCCCCC
Q 021281 178 LRWLRNTVGFQDFRFDFARGY----------------------SAKYVKEYIEGAR---P-IFSVGEYWDSCNYNSHGLD 231 (314)
Q Consensus 178 ~~~w~~~~gvDGfRlDaa~~i----------------------~~~f~~~~~~~~~---~-~~~~gE~~~~~~y~~~~~~ 231 (314)
+++|++++||||||+|++.++ ...||+++.+.++ | .+++||.+...+
T Consensus 291 ~~~W~~e~~iDG~R~Dav~~~ly~d~~~~~~~~~~~gg~~n~~a~~fl~~ln~~v~~~~p~~~~iAE~~~~~~------- 363 (639)
T PRK14706 291 ALKWLQDFHVDGLRVDAVASMLYLDFSRTEWVPNIHGGRENLEAIAFLKRLNEVTHHMAPGCMMIAEESTSFP------- 363 (639)
T ss_pred HHHHHHHhCCCeEEEeeehheeecccCcccccccccCCcccHHHHHHHHHHHHHHHHhCCCeEEEEECCCCCc-------
Confidence 999999999999999998875 2478888877654 4 789999876521
Q ss_pred CccchhHHHHhhhhccCCCcceeeChhhHHHHHHHH-ccchhHHHhhhCCCCCCccccCCceeeccCCCCCCCC
Q 021281 232 YNQDSHRQRIINWIDGTGQLSAAFDFTTKGILQEAV-KGQFWRLRDAQGKPPGVMGWWPSRAVTFLDNHDTGST 304 (314)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~df~l~~~l~~~~-~g~~~~l~~~~~~~~~~~~~~p~~~v~F~~NHD~~R~ 304 (314)
.-..+... ..+++..++..+...+.+.+ ....++-...-......+.....+.| +++|||+.|-
T Consensus 364 -------~v~~~~~~-G~gFD~~w~~~w~~~~l~~~~~~~~~r~~~~~~lt~~~~y~~~e~~i-l~~SHDev~~ 428 (639)
T PRK14706 364 -------GVTVPTPY-GLGFDYKWAMGWMNDTLAYFEQDPLWRKYHHHKLTFFNVYRTSENYV-LAISHDEVVH 428 (639)
T ss_pred -------CcccccCC-CCccccEeccHHHHHHHHHhccCchhhhhchhccchhhhhhccccEe-cCCCCccccC
Confidence 00112222 23578888888888777766 33333211110000001112233444 8899999873
No 23
>PLN02960 alpha-amylase
Probab=100.00 E-value=1e-34 Score=293.90 Aligned_cols=246 Identities=14% Similarity=0.201 Sum_probs=171.4
Q ss_pred CceeEEEEeeCCCCCC---chHHHHHHh-hhHHHHcCCCEEEeCCCCCCC--CCCCCCcccCCCcCCCCCCHHHHHHHHH
Q 021281 24 GREILFQGFNWESCKH---DWWRNLERK-VPDISKSGFTSVWLPPATHSF--APEGYLPQNLYSLNSSYGSEHLLKALLH 97 (314)
Q Consensus 24 ~~~~i~q~F~w~~~~~---g~~~gi~~~-ldyl~~lG~~~I~l~Pi~~~~--~~~gY~~~d~~~id~~~Gt~~df~~lv~ 97 (314)
...+||++....+..+ |+|++++++ |+||++||||+||||||++.. .++||++.+||+++++|||+++||+||+
T Consensus 394 ~~~vIYElHvg~~~~e~~~gtf~~~~e~~LdYLk~LGvt~IeLmPv~e~~~~~swGY~~~~yfa~~~~yGtp~dfk~LVd 473 (897)
T PLN02960 394 KSLRIYECHVGISGSEPKISSFKEFTQKVLPHVKKAGYNAIQLIGVQEHKDYSSVGYKVTNFFAVSSRFGTPDDFKRLVD 473 (897)
T ss_pred CCcEEEEEecccccCCCCCCCHHHHHHHHHHHHHHcCCCEEEECCcccCCCCCCCCCCcccCCCcccccCCHHHHHHHHH
Confidence 3579999999765443 499999865 999999999999999999876 5799999999999999999999999999
Q ss_pred HHhhCCCEEEEeeeeccccCCCCCCCCcCcCCCCCC-CCCCCCCcccCCCCCccccCCCCCCCCCCCCCCCHHHHHHHHH
Q 021281 98 KMKQHKVRAMADIVINHRVGTTQGHGGKYNRYDGIP-LSWDEHAVTSCTGGLGNGSTGDNFHGVPNIDHTQHFVRKDIIA 176 (314)
Q Consensus 98 ~ah~~Gi~VilD~V~NH~~~~~~~~~~~y~~f~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~~p~v~~~l~~ 176 (314)
+||++||+||||+|+||++.++... ...|++.. ..++.. ..+. . ...+.+.+|+.+|+||++|++
T Consensus 474 ~aH~~GI~VILDvV~NH~~~d~~~~---L~~FDG~~~~Yf~~~-----~~g~-----~-~~WG~~~fNy~~~eVr~fLls 539 (897)
T PLN02960 474 EAHGLGLLVFLDIVHSYAAADEMVG---LSLFDGSNDCYFHSG-----KRGH-----H-KRWGTRMFKYGDHEVLHFLLS 539 (897)
T ss_pred HHHHCCCEEEEEecccccCCccccc---hhhcCCCccceeecC-----CCCc-----c-CCCCCcccCCCCHHHHHHHHH
Confidence 9999999999999999999875311 11233211 011100 0010 0 122456799999999999999
Q ss_pred HHHHHHHhCCCCEEEeccCCCC-------------------------CHHHHHHHHHhhC----CCeEEEcccCCCCCCC
Q 021281 177 WLRWLRNTVGFQDFRFDFARGY-------------------------SAKYVKEYIEGAR----PIFSVGEYWDSCNYNS 227 (314)
Q Consensus 177 ~~~~w~~~~gvDGfRlDaa~~i-------------------------~~~f~~~~~~~~~----~~~~~gE~~~~~~y~~ 227 (314)
++++|++++||||||+||+..+ ...|++++...++ +.++|+|-..+.+
T Consensus 540 na~yWl~EyhIDGfR~DAV~sMlY~d~g~~~~~G~~~~~~n~~~d~~Ai~fL~~lN~~v~~~~P~vilIAEdss~~P--- 616 (897)
T PLN02960 540 NLNWWVTEYRVDGFQFHSLGSMLYTHNGFASFTGDLDEYCNQYVDRDALIYLILANEMLHQLHPNIITIAEDATFYP--- 616 (897)
T ss_pred HHHHHHHHHCCCceeecccceeeeeccCccccCCcccccCCccCCchHHHHHHHHHHHHHhhCCCeEEEEECCCCCC---
Confidence 9999999999999999999652 1346776666543 3688999654411
Q ss_pred CCCCCccchhHHHHhhhhccC-CCcceeeChhhHHHHHHHHcc---chhHHHhhhCCCCCCc--cccCCceeeccCCCCC
Q 021281 228 HGLDYNQDSHRQRIINWIDGT-GQLSAAFDFTTKGILQEAVKG---QFWRLRDAQGKPPGVM--GWWPSRAVTFLDNHDT 301 (314)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~df~l~~~l~~~~~g---~~~~l~~~~~~~~~~~--~~~p~~~v~F~~NHD~ 301 (314)
.++.-.... -|++.-.|+.....+..++.. ..+.+..... .+. ...+.+.|.|++|||+
T Consensus 617 ------------~vt~P~~~GGLGFDYkwnmG~~~d~l~~l~~~~~r~~~~~~l~~---s~~~~~~~~~~~v~Y~EnHDQ 681 (897)
T PLN02960 617 ------------GLCEPTSQGGLGFDYYVNLSPSEMWLSLLENVPDQEWSMSKIVS---TLVKNKENADKMLSYAENHNQ 681 (897)
T ss_pred ------------CccccCCCCCCCcccccCCCcHHHHHHHHHhCcCCCCChhccEe---eeccCcCCcceEEEEecCcCc
Confidence 122222221 135555666665556665522 1222221111 122 2356689999999999
No 24
>PRK12568 glycogen branching enzyme; Provisional
Probab=100.00 E-value=1.5e-34 Score=291.69 Aligned_cols=249 Identities=15% Similarity=0.187 Sum_probs=174.9
Q ss_pred CCceeEEEEeeCCCCC--C---chHHHHHHh-hhHHHHcCCCEEEeCCCCCCC--CCCCCCcccCCCcCCCCCCHHHHHH
Q 021281 23 NGREILFQGFNWESCK--H---DWWRNLERK-VPDISKSGFTSVWLPPATHSF--APEGYLPQNLYSLNSSYGSEHLLKA 94 (314)
Q Consensus 23 ~~~~~i~q~F~w~~~~--~---g~~~gi~~~-ldyl~~lG~~~I~l~Pi~~~~--~~~gY~~~d~~~id~~~Gt~~df~~ 94 (314)
....+||++...+... + ++|++++++ |+|||+||||+|||+||++.+ .++||++.+||+++++|||+++||+
T Consensus 244 ~~~~~IYEvHvgsf~~~~~~~~~~~~~la~~ll~ylk~LGvt~I~LmPi~e~~~~~~wGY~~~~~~a~~~~~G~~~dfk~ 323 (730)
T PRK12568 244 PAPLSIYEVHAASWRRDGHNQPLDWPTLAEQLIPYVQQLGFTHIELLPITEHPFGGSWGYQPLGLYAPTARHGSPDGFAQ 323 (730)
T ss_pred CCCcEEEEEEhHHhcCCCCCCCCCHHHHHHHHHHHHHHcCCCEEEECccccCCCCCCCCCCCCcCCccCcccCCHHHHHH
Confidence 3457899999865533 2 289999988 599999999999999999876 5799999999999999999999999
Q ss_pred HHHHHhhCCCEEEEeeeeccccCCCCCCCCcCcCCCCCCCCCCCCCcccCCCCCccccCCCCCCCCCCCCCCCHHHHHHH
Q 021281 95 LLHKMKQHKVRAMADIVINHRVGTTQGHGGKYNRYDGIPLSWDEHAVTSCTGGLGNGSTGDNFHGVPNIDHTQHFVRKDI 174 (314)
Q Consensus 95 lv~~ah~~Gi~VilD~V~NH~~~~~~~~~~~y~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~~p~v~~~l 174 (314)
||++||++||+||||+|+||++.+... +..|++.....++.. ..+ ....|..+ .+|+.+|+||++|
T Consensus 324 lV~~~H~~Gi~VIlD~V~nH~~~d~~~----l~~fdg~~~Ye~~d~----~~g-----~~~~W~~~-~~N~~~peVr~~l 389 (730)
T PRK12568 324 FVDACHRAGIGVILDWVSAHFPDDAHG----LAQFDGAALYEHADP----REG-----MHRDWNTL-IYNYGRPEVTAYL 389 (730)
T ss_pred HHHHHHHCCCEEEEEeccccCCccccc----cccCCCccccccCCC----cCC-----ccCCCCCe-ecccCCHHHHHHH
Confidence 999999999999999999999986431 223333111111100 001 11123222 5899999999999
Q ss_pred HHHHHHHHHhCCCCEEEeccCCCC------------------------CHHHHHHHHHhhC---C-CeEEEcccCCCCCC
Q 021281 175 IAWLRWLRNTVGFQDFRFDFARGY------------------------SAKYVKEYIEGAR---P-IFSVGEYWDSCNYN 226 (314)
Q Consensus 175 ~~~~~~w~~~~gvDGfRlDaa~~i------------------------~~~f~~~~~~~~~---~-~~~~gE~~~~~~y~ 226 (314)
++++++|++++||||||+||++++ ..+||+++.+.++ | .+++||.+...+
T Consensus 390 i~~a~~Wl~eyhIDG~R~DAva~mly~d~~r~~g~w~pn~~gg~en~ea~~Fl~~ln~~v~~~~P~~~~IAEest~~p-- 467 (730)
T PRK12568 390 LGSALEWIEHYHLDGLRVDAVASMLYRDYGRAEGEWVPNAHGGRENLEAVAFLRQLNREIASQFPGVLTIAEESTAWP-- 467 (730)
T ss_pred HHHHHHHHHHhCceEEEEcCHhHhhhhccccccccccccccCCccChHHHHHHHHHHHHHHHHCCCeEEEEEcCCCCc--
Confidence 999999999999999999998643 1469999887764 4 789999754311
Q ss_pred CCCCCCccchhHHHHhhhhccCCCcceeeChhhHHHHHHHHccc-hhHHH--hhhCCCCCCccccCCceeeccCCCCCC
Q 021281 227 SHGLDYNQDSHRQRIINWIDGTGQLSAAFDFTTKGILQEAVKGQ-FWRLR--DAQGKPPGVMGWWPSRAVTFLDNHDTG 302 (314)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~df~l~~~l~~~~~g~-~~~l~--~~~~~~~~~~~~~p~~~v~F~~NHD~~ 302 (314)
....+.....-|++..++..+...+.+.+..+ ..+-. +.+. .+++....++.| ...|||+.
T Consensus 468 ------------~vt~p~~~gGlGFd~kwn~gwm~d~l~y~~~dp~~r~~~h~~lt--f~~~y~~~e~fv-lp~SHDEv 531 (730)
T PRK12568 468 ------------GVTAPISDGGLGFTHKWNMGWMHDTLHYMQRDPAERAHHHSQLT--FGLVYAFSERFV-LPLSHDEV 531 (730)
T ss_pred ------------cccccccCCCCCcCcEeCChhHHHHHHHHhhCchhhhhhhhhhh--hhhhhhhhccEe-ccCCCccc
Confidence 01111121222578888999888888888543 22111 1111 122222334444 78999984
No 25
>COG0366 AmyA Glycosidases [Carbohydrate transport and metabolism]
Probab=100.00 E-value=1.6e-35 Score=292.34 Aligned_cols=184 Identities=18% Similarity=0.308 Sum_probs=142.4
Q ss_pred eeEEEEeeCCCCC-----------CchHHHHHHhhhHHHHcCCCEEEeCCCCCC-CCCCCCCcccCCCcCCCCCCHHHHH
Q 021281 26 EILFQGFNWESCK-----------HDWWRNLERKVPDISKSGFTSVWLPPATHS-FAPEGYLPQNLYSLNSSYGSEHLLK 93 (314)
Q Consensus 26 ~~i~q~F~w~~~~-----------~g~~~gi~~~ldyl~~lG~~~I~l~Pi~~~-~~~~gY~~~d~~~id~~~Gt~~df~ 93 (314)
+||||++...+.. .|||+||+++||||++|||++|||+||+++ ..+|||++.||++|+|.+||++||+
T Consensus 1 ~viyqi~~~~f~d~~~~~~~~~~G~Gdl~Gi~~~LdYl~~LGv~aiwl~Pi~~s~~~~~gY~~~Dy~~id~~~Gt~~d~~ 80 (505)
T COG0366 1 AVIYQIYPDRFADSNGSNGPDYDGGGDLKGITEKLDYLKELGVDAIWLSPIFESPQADHGYDVSDYTKVDPHFGTEEDFK 80 (505)
T ss_pred CcEEEEechhhcCCCCCCccCCCCcccHHhHHHhhhHHHHhCCCEEEeCCCCCCCccCCCccccchhhcCcccCCHHHHH
Confidence 3788888764432 279999999999999999999999999999 5899999999999999999999999
Q ss_pred HHHHHHhhCCCEEEEeeeeccccCCCCCCCCcCcCCC----CCCCCCCCC--------C---cc---cCC-CCCccccCC
Q 021281 94 ALLHKMKQHKVRAMADIVINHRVGTTQGHGGKYNRYD----GIPLSWDEH--------A---VT---SCT-GGLGNGSTG 154 (314)
Q Consensus 94 ~lv~~ah~~Gi~VilD~V~NH~~~~~~~~~~~y~~f~----~~~~~~~~~--------~---~~---~~~-~~~~~~~~~ 154 (314)
+||++||++||+||+|+|+||+|..++++........ .....|... . .. .+. ...+.....
T Consensus 81 ~li~~~H~~gi~vi~D~V~NH~s~~~~~f~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (505)
T COG0366 81 ELVEEAHKRGIKVILDLVFNHTSDEHPWFKEARSSKPNPKRSDYYIWRDPDPDGTPPNNWFSVFGGDAWTWGNTGEYYLH 160 (505)
T ss_pred HHHHHHHHCCCEEEEEeccCcCCCccHHHHHHhcCCCCcccCCCceEccCcccCCCCCcchhhcCCCCCCcCCCCceEEE
Confidence 9999999999999999999999999974322110000 001112110 0 00 000 011223344
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCCCCEEEeccCCCCCH-----------HHHHHHHHhh
Q 021281 155 DNFHGVPNIDHTQHFVRKDIIAWLRWLRNTVGFQDFRFDFARGYSA-----------KYVKEYIEGA 210 (314)
Q Consensus 155 ~~~~~~~dln~~~p~v~~~l~~~~~~w~~~~gvDGfRlDaa~~i~~-----------~f~~~~~~~~ 210 (314)
.+...+|+||+.||+||+++.+.+++|+ +.||||||+|++++++. .++..+.+..
T Consensus 161 ~~~~~~~dln~~n~~v~~~~~~~~~~W~-~~gvDGfRlDa~~~~~~~~~~~~~~~~~~~~~~~~~~~ 226 (505)
T COG0366 161 LFSSEQPDLNWENPEVREELLDVVKFWL-DKGVDGFRLDAAKHISKDFGLPPSEENLTFLEEIHEYL 226 (505)
T ss_pred ecCCCCCCcCCCCHHHHHHHHHHHHHHH-HcCCCeEEeccHhhhccccCCCCcccccccHHHHHHHH
Confidence 5678899999999999999999999999 69999999999999998 6666666554
No 26
>PLN02447 1,4-alpha-glucan-branching enzyme
Probab=100.00 E-value=3.6e-34 Score=289.53 Aligned_cols=248 Identities=18% Similarity=0.281 Sum_probs=171.0
Q ss_pred CceeEEEEeeCCCCCC---chHHHH-HHhhhHHHHcCCCEEEeCCCCCCC--CCCCCCcccCCCcCCCCCCHHHHHHHHH
Q 021281 24 GREILFQGFNWESCKH---DWWRNL-ERKVPDISKSGFTSVWLPPATHSF--APEGYLPQNLYSLNSSYGSEHLLKALLH 97 (314)
Q Consensus 24 ~~~~i~q~F~w~~~~~---g~~~gi-~~~ldyl~~lG~~~I~l~Pi~~~~--~~~gY~~~d~~~id~~~Gt~~df~~lv~ 97 (314)
...+||++....+..+ ++|+++ +++|+||++||||+|||+||++.+ .++||++.|||+++++|||+++||+||+
T Consensus 228 ~~~~IYE~Hvg~~~~~~~~gty~~~~~~~L~ylk~LG~t~I~LmPi~e~~~~~~wGY~~~~~fa~~~~~Gtp~dlk~LVd 307 (758)
T PLN02447 228 AALRIYEAHVGMSSEEPKVNSYREFADDVLPRIKALGYNAVQLMAIQEHAYYGSFGYHVTNFFAVSSRSGTPEDLKYLID 307 (758)
T ss_pred CCCEEEEEeCCcccCCCCCCCHHHHHHHHHHHHHHcCCCEEEECCccccCCCCCCCcCcccCcccccccCCHHHHHHHHH
Confidence 3468999998755433 489997 567999999999999999999987 4799999999999999999999999999
Q ss_pred HHhhCCCEEEEeeeeccccCCCCCCCCcCcCCCCCC-CCCCCCCcccCCCCCccccCCCCCCCCCCCCCCCHHHHHHHHH
Q 021281 98 KMKQHKVRAMADIVINHRVGTTQGHGGKYNRYDGIP-LSWDEHAVTSCTGGLGNGSTGDNFHGVPNIDHTQHFVRKDIIA 176 (314)
Q Consensus 98 ~ah~~Gi~VilD~V~NH~~~~~~~~~~~y~~f~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~~p~v~~~l~~ 176 (314)
+||++||+||||+|+||++.++.. .+..|++.. ..++... .+.. ...+...+|+.+++||++|++
T Consensus 308 ~aH~~GI~VilDvV~nH~~~~~~~---gl~~fDg~~~~Yf~~~~-----~g~~------~~w~~~~~N~~~~eVr~fLl~ 373 (758)
T PLN02447 308 KAHSLGLRVLMDVVHSHASKNTLD---GLNGFDGTDGSYFHSGP-----RGYH------WLWDSRLFNYGNWEVLRFLLS 373 (758)
T ss_pred HHHHCCCEEEEEeccccccccccc---cccccCCCCccccccCC-----CCCc------CcCCCceecCCCHHHHHHHHH
Confidence 999999999999999999986531 122233211 1121110 1110 112345799999999999999
Q ss_pred HHHHHHHhCCCCEEEeccCCCCC--------------------------HHHHHHHHHhhC---C-CeEEEcccCCCCCC
Q 021281 177 WLRWLRNTVGFQDFRFDFARGYS--------------------------AKYVKEYIEGAR---P-IFSVGEYWDSCNYN 226 (314)
Q Consensus 177 ~~~~w~~~~gvDGfRlDaa~~i~--------------------------~~f~~~~~~~~~---~-~~~~gE~~~~~~y~ 226 (314)
++++|++++||||||+|+++++- ..|++.+...++ | .++|||.+.+.+
T Consensus 374 ~~~~Wl~ey~IDGfRfDaV~smlY~~hg~~~~f~~~~~~~~g~~~d~~a~~fL~~~N~~i~~~~p~~~~IAEd~s~~p-- 451 (758)
T PLN02447 374 NLRWWLEEYKFDGFRFDGVTSMLYHHHGLQMAFTGNYNEYFGMATDVDAVVYLMLANDLLHGLYPEAVTIAEDVSGMP-- 451 (758)
T ss_pred HHHHHHHHhCcccccccchhhhhccccCcccccccCcccccCCccChHHHHHHHHHHHHHHHhCCCeEEEEEcCCCCC--
Confidence 99999999999999999998662 235666555443 4 688999766521
Q ss_pred CCCCCCccchhHHHHhhhhccCC-CcceeeChhhHHHHHHHHcc---chhHHHhhhCCCCCCcc-ccCCceeeccCCCCC
Q 021281 227 SHGLDYNQDSHRQRIINWIDGTG-QLSAAFDFTTKGILQEAVKG---QFWRLRDAQGKPPGVMG-WWPSRAVTFLDNHDT 301 (314)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~df~l~~~l~~~~~g---~~~~l~~~~~~~~~~~~-~~p~~~v~F~~NHD~ 301 (314)
.++.-+...| |++.-++-.......+.++. ..|.+..+.- .++. ...++.|.+++|||+
T Consensus 452 -------------~l~~p~~~GGlGFDykw~Mg~~~~~l~~l~~~~d~~~~~~~l~~---sl~~r~~~E~~I~y~eSHDe 515 (758)
T PLN02447 452 -------------TLCRPVQEGGVGFDYRLAMAIPDKWIELLKEKRDEDWSMGDIVH---TLTNRRYTEKCVAYAESHDQ 515 (758)
T ss_pred -------------CccccCCCCcCCcceEECCccchHHHHHHhhCCCcccCHHHHHH---HHhcccccCceEeccCCcCe
Confidence 1232232211 23333333344444444422 2344433321 1232 456799999999999
Q ss_pred CC
Q 021281 302 GS 303 (314)
Q Consensus 302 ~R 303 (314)
..
T Consensus 516 vv 517 (758)
T PLN02447 516 AL 517 (758)
T ss_pred ee
Confidence 65
No 27
>PRK14705 glycogen branching enzyme; Provisional
Probab=100.00 E-value=4.4e-34 Score=300.77 Aligned_cols=183 Identities=17% Similarity=0.198 Sum_probs=146.1
Q ss_pred eeEEEEeeCCCCCCchHHHHHHh-hhHHHHcCCCEEEeCCCCCCC--CCCCCCcccCCCcCCCCCCHHHHHHHHHHHhhC
Q 021281 26 EILFQGFNWESCKHDWWRNLERK-VPDISKSGFTSVWLPPATHSF--APEGYLPQNLYSLNSSYGSEHLLKALLHKMKQH 102 (314)
Q Consensus 26 ~~i~q~F~w~~~~~g~~~gi~~~-ldyl~~lG~~~I~l~Pi~~~~--~~~gY~~~d~~~id~~~Gt~~df~~lv~~ah~~ 102 (314)
.+||++...+....++|++++++ |+|||+||||+||||||++.+ .++||++.+||+++++|||++|||+||++||++
T Consensus 748 ~~IYEvHvgsf~~~~~~~~l~~~lldYlk~LGvt~IeLmPv~e~p~~~swGY~~~~y~ap~~ryGt~~dfk~lVd~~H~~ 827 (1224)
T PRK14705 748 MSVYEVHLGSWRLGLGYRELAKELVDYVKWLGFTHVEFMPVAEHPFGGSWGYQVTSYFAPTSRFGHPDEFRFLVDSLHQA 827 (1224)
T ss_pred cEEEEEEecccccCCchHHHHHHHHHHHHHhCCCEEEECccccCCCCCCCCCCccccCCcCcccCCHHHHHHHHHHHHHC
Confidence 69999999777666789999888 599999999999999999876 579999999999999999999999999999999
Q ss_pred CCEEEEeeeeccccCCCCCCCCcCcCCCCCCCCCCCCCcccCCCCCccccCCCCCCCCCCCCCCCHHHHHHHHHHHHHHH
Q 021281 103 KVRAMADIVINHRVGTTQGHGGKYNRYDGIPLSWDEHAVTSCTGGLGNGSTGDNFHGVPNIDHTQHFVRKDIIAWLRWLR 182 (314)
Q Consensus 103 Gi~VilD~V~NH~~~~~~~~~~~y~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~~p~v~~~l~~~~~~w~ 182 (314)
||+||||+|+||++.+... ...|++.....+..+. .+. +..|. ...+|+.+++||++|++++++|+
T Consensus 828 GI~VILD~V~nH~~~d~~~----l~~fdg~~~y~~~d~~----~g~-----~~~Wg-~~~fn~~~~eVr~fli~~a~~Wl 893 (1224)
T PRK14705 828 GIGVLLDWVPAHFPKDSWA----LAQFDGQPLYEHADPA----LGE-----HPDWG-TLIFDFGRTEVRNFLVANALYWL 893 (1224)
T ss_pred CCEEEEEeccccCCcchhh----hhhcCCCcccccCCcc----cCC-----CCCCC-CceecCCCHHHHHHHHHHHHHHH
Confidence 9999999999999876431 1123321111111100 000 11232 34699999999999999999999
Q ss_pred HhCCCCEEEeccCCCC------------------------CHHHHHHHHHhhC---C-CeEEEcccCC
Q 021281 183 NTVGFQDFRFDFARGY------------------------SAKYVKEYIEGAR---P-IFSVGEYWDS 222 (314)
Q Consensus 183 ~~~gvDGfRlDaa~~i------------------------~~~f~~~~~~~~~---~-~~~~gE~~~~ 222 (314)
++|+|||||+|++.++ ..+||+++.+.++ | .++|+|.+..
T Consensus 894 ~eyhiDGfR~Dav~~mly~Dysr~~g~w~pn~~gg~en~~ai~fl~~ln~~v~~~~p~~~~IAEest~ 961 (1224)
T PRK14705 894 DEFHIDGLRVDAVASMLYLDYSREEGQWRPNRFGGRENLEAISFLQEVNATVYKTHPGAVMIAEESTA 961 (1224)
T ss_pred HHhCCCcEEEeehhhhhhcccccccccccccccCCccChHHHHHHHHHHHHHHHHCCCeEEEEEcCCC
Confidence 9999999999998765 3579999887664 4 7899997665
No 28
>KOG2212 consensus Alpha-amylase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=2.7e-33 Score=254.02 Aligned_cols=268 Identities=21% Similarity=0.347 Sum_probs=202.7
Q ss_pred ccccccCccccCCceeEEEEeeCCCCCCchHHHH-HHhhhHHHHcCCCEEEeCCCCCCCC--------CCCCCcccCCCc
Q 021281 12 NQQTDLGAVIRNGREILFQGFNWESCKHDWWRNL-ERKVPDISKSGFTSVWLPPATHSFA--------PEGYLPQNLYSL 82 (314)
Q Consensus 12 ~~~~~~~~~~~~~~~~i~q~F~w~~~~~g~~~gi-~~~ldyl~~lG~~~I~l~Pi~~~~~--------~~gY~~~d~~~i 82 (314)
+--.+..++++.++.+|+|+|+|. |..| .|+-..|+.-|+.+|+++|+.++.. ...|+|+. |++
T Consensus 15 ~~~aq~~t~~~~~R~tmVHLFEWK------W~DiA~ECE~FL~p~G~~gVQVSP~nEn~~~~~~~rPWWeRYQPvS-YKL 87 (504)
T KOG2212|consen 15 NFWAQYSTNTQQGRTTIVHLFEWK------WVDIALECERFLAPKGFGGVQVSPPNENVAIHNPFRPWWERYQPVS-YKL 87 (504)
T ss_pred HHHhhcCchhhcCcceEEEEEEee------hHHHHHHHHhhcCcCCcceeeecCcchhhhhcCCCCCceeecccce-EEe
Confidence 344567889999999999999999 5555 5555688999999999999998762 24799995 899
Q ss_pred CCCCCCHHHHHHHHHHHhhCCCEEEEeeeeccccCCCC-----CCCCcCc-----CCCC---CCCCCCCC-C------cc
Q 021281 83 NSSYGSEHLLKALLHKMKQHKVRAMADIVINHRVGTTQ-----GHGGKYN-----RYDG---IPLSWDEH-A------VT 142 (314)
Q Consensus 83 d~~~Gt~~df~~lv~~ah~~Gi~VilD~V~NH~~~~~~-----~~~~~y~-----~f~~---~~~~~~~~-~------~~ 142 (314)
++|-|++++|+.||++|++-|+++++|+|+|||+.... +..+.+. .|++ +..++++. | +.
T Consensus 88 ~tRSGNE~eF~dMV~RCN~VGVRiyVDvv~NHM~g~~~~G~~vGt~Gs~~~p~s~SfPGVPYs~~DFn~~kc~~~~~~i~ 167 (504)
T KOG2212|consen 88 CTRSGNEDEFRDMVTRCNNVGVRIYVDAVINHMCGNAVSGGTVGTCGSYFNPGSRSFPGVPYSGWDFNDGKCKTGSGDIE 167 (504)
T ss_pred eccCCCHHHHHHHHHHhhccceEEEehhhhhhhccccccCCccccccCccCCCCCCCCCCCcccccCCCcccCCCccccc
Confidence 99999999999999999999999999999999996321 1112111 1222 12455542 1 11
Q ss_pred cCCCCCccccCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCCCCEEEeccCCCCCHHHHHHHHHhhC-----------
Q 021281 143 SCTGGLGNGSTGDNFHGVPNIDHTQHFVRKDIIAWLRWLRNTVGFQDFRFDFARGYSAKYVKEYIEGAR----------- 211 (314)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~dln~~~p~v~~~l~~~~~~w~~~~gvDGfRlDaa~~i~~~f~~~~~~~~~----------- 211 (314)
.+.+. ..+..|.+-++.|||..+..||..+++++.++| ++||.|||.||+||+.++-+..+...++
T Consensus 168 ~~Nda--~~V~~C~LVGL~DL~Q~s~~Vr~Kive~L~hLi-dlGVAGFRvDAsKHMwp~Di~~I~~~l~nLnsD~f~s~s 244 (504)
T KOG2212|consen 168 NYNDA--TQVRDCRLVGLLDLAQGSDYVRSKIAEYLNHLI-DIGVAGFRVDASKHMWPGDIKAILDKLHNLNSDWFPSGS 244 (504)
T ss_pred cccch--hhhhcceEeecchhhhcchHHHHHHHHHHHHHH-HhccceeeechhhccChHHHHHHHHHHhhcccccccCCC
Confidence 11121 235778999999999999999999999999999 9999999999999999999998887765
Q ss_pred CCeEEEcccCCCCCCCCCCCCccchhHHHHhhhhccCCCcceeeChhhHHHHHHHHccc-hhHHHhhhCCCCCCccccCC
Q 021281 212 PIFSVGEYWDSCNYNSHGLDYNQDSHRQRIINWIDGTGQLSAAFDFTTKGILQEAVKGQ-FWRLRDAQGKPPGVMGWWPS 290 (314)
Q Consensus 212 ~~~~~gE~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~df~l~~~l~~~~~g~-~~~l~~~~~~~~~~~~~~p~ 290 (314)
..|++-|+.+-. |+. -.-.+|. ++..+.+|.+...+-.++++. .+.....++...+.+ ...
T Consensus 245 rpfi~qEVID~G----gE~--------v~~~dY~----g~G~~TeF~f~~~ig~~~r~~~~~kyL~nwG~~wGf~--~s~ 306 (504)
T KOG2212|consen 245 KPFIYQEVIDLG----GEP--------IKSSDYF----GNGRVTEFKFGAKLGTVIRKWNKMKYLKNWGEGWGFM--PSD 306 (504)
T ss_pred CceehhhhhhcC----Cce--------eeccccc----CCceeeeeechHHHHHHHhcchhHHHHHhcCCccCcC--CCc
Confidence 158888887751 110 0001222 367899999999999999774 566666666443332 344
Q ss_pred ceeeccCCCCCCCCCCC
Q 021281 291 RAVTFLDNHDTGSTQVP 307 (314)
Q Consensus 291 ~~v~F~~NHD~~R~~~~ 307 (314)
++++|++|||++|..+.
T Consensus 307 ~~L~FvDNHDNQR~~ga 323 (504)
T KOG2212|consen 307 RALVFVDNHDNQRGHGA 323 (504)
T ss_pred ceEEEeccCcccccCCC
Confidence 89999999999997764
No 29
>KOG0471 consensus Alpha-amylase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=5.6e-34 Score=283.30 Aligned_cols=205 Identities=28% Similarity=0.419 Sum_probs=161.4
Q ss_pred ccccCCceeEEEEeeCCCCCC-----chHHHHHHhhhHHHHcCCCEEEeCCCCCCC-CCCCCCcccCCCcCCCCCCHHHH
Q 021281 19 AVIRNGREILFQGFNWESCKH-----DWWRNLERKVPDISKSGFTSVWLPPATHSF-APEGYLPQNLYSLNSSYGSEHLL 92 (314)
Q Consensus 19 ~~~~~~~~~i~q~F~w~~~~~-----g~~~gi~~~ldyl~~lG~~~I~l~Pi~~~~-~~~gY~~~d~~~id~~~Gt~~df 92 (314)
|..|. ++++||++..++..+ ||++||.++||||+++|||+|||+||+++. .++||++.||++|+|+|||+|||
T Consensus 12 ~~~W~-~~~~YQI~~~sF~~s~~d~~G~~~GI~~kldyi~~lG~taiWisP~~~s~~~~~GY~~~d~~~l~p~fGt~edf 90 (545)
T KOG0471|consen 12 PDWWK-TESIYQIYPDSFADSDGDGVGDLKGITSKLDYIKELGFTAIWLSPFTKSSKPDFGYDASDLEQLRPRFGTEEDF 90 (545)
T ss_pred chhhh-cCceeEEeccccccccCCCccccccchhhhhHHHhcCCceEEeCCCcCCCHHHhccCccchhhhcccccHHHHH
Confidence 43444 489999998765432 599999999999999999999999999998 46999999999999999999999
Q ss_pred HHHHHHHhhCCCEEEEeeeeccccCCCCCCCC----------cCcCCCCC---------CCCCCCCCc---ccCCCCCcc
Q 021281 93 KALLHKMKQHKVRAMADIVINHRVGTTQGHGG----------KYNRYDGI---------PLSWDEHAV---TSCTGGLGN 150 (314)
Q Consensus 93 ~~lv~~ah~~Gi~VilD~V~NH~~~~~~~~~~----------~y~~f~~~---------~~~~~~~~~---~~~~~~~~~ 150 (314)
++||+++|++||+||+|+|+||++..++|+.. .|.++.+. +..|.+... .++..+.+.
T Consensus 91 ~~Li~~~h~~gi~ii~D~viNh~~~~~~wf~~~~~~~~~y~d~~~~~~~~~~~~g~~~~p~nw~~~~~~s~~~~~e~~~~ 170 (545)
T KOG0471|consen 91 KELILAMHKLGIKIIADLVINHRSDEVEWFKASPTSKTGYEDWYPWHDGSSLDVGKRIPPLNWLSVFGGSAWPFDEGRQK 170 (545)
T ss_pred HHHHHHHhhcceEEEEeeccccCCccccccccCccccccceeeeeccCcccccccCCCCccchHhhhccccCcccccccc
Confidence 99999999999999999999999987775532 22222221 122221111 011122334
Q ss_pred ccCCCCCCCCCCCCCCCHHHHHHHHHHHH-HHHHhCCCCEEEeccCCCCCHHHHHHHHHhhCCCeEEEcccCCCCCC
Q 021281 151 GSTGDNFHGVPNIDHTQHFVRKDIIAWLR-WLRNTVGFQDFRFDFARGYSAKYVKEYIEGARPIFSVGEYWDSCNYN 226 (314)
Q Consensus 151 ~~~~~~~~~~~dln~~~p~v~~~l~~~~~-~w~~~~gvDGfRlDaa~~i~~~f~~~~~~~~~~~~~~gE~~~~~~y~ 226 (314)
++.+.....+||||++||.|++.+.++++ +|. +.||||||+|+++++..+++. ......|.+..||.|.+..+.
T Consensus 171 ~~l~~~~~~~pDln~~n~~V~~~~~~~l~~~~~-~~gvdGfRiD~v~~~~~~~~~-~~~~~~p~~~~~~~~~~~~~~ 245 (545)
T KOG0471|consen 171 YYLGQFAVLQPDLNYENPDVRKAIKEWLRDFWL-EKGVDGFRIDAVKGYAGENFK-NMWPDEPVFDVGEKLQDDNYV 245 (545)
T ss_pred eeccchhhcCCCCCCCCHHHHHHHHHHHHHHHh-hcCCCeEEEEccccccccccc-ccccCCCcccceeEecCcchh
Confidence 45566678899999999999999999999 565 999999999999999999988 344445788999998886543
No 30
>TIGR02455 TreS_stutzeri trehalose synthase, Pseudomonas stutzeri type. Trehalose synthase catalyzes a one-step conversion of maltose to trehalose. This is an alternative to the OtsAB and TreYZ pathways. This family includes a characterized example from Pseudomonas stutzeri plus very closely related sequences from other Pseudomonads. Cutoff scores are set to find a more distantly related sequence from Desulfovibrio vulgaris, likely to be functionally equivalent, between trusted and noise limits.
Probab=99.97 E-value=4.2e-31 Score=259.33 Aligned_cols=235 Identities=19% Similarity=0.176 Sum_probs=172.7
Q ss_pred HHhhhHHHHcCCCEEEeCCCCCC---------CC-CCCCCcccCCCcCCCCCCHHHHHHHHHHHhhCCCEEEEeeeeccc
Q 021281 46 ERKVPDISKSGFTSVWLPPATHS---------FA-PEGYLPQNLYSLNSSYGSEHLLKALLHKMKQHKVRAMADIVINHR 115 (314)
Q Consensus 46 ~~~ldyl~~lG~~~I~l~Pi~~~---------~~-~~gY~~~d~~~id~~~Gt~~df~~lv~~ah~~Gi~VilD~V~NH~ 115 (314)
....+||++|||++|||+|++++ +. ..||+++| +.|||+|||++||++|+++||++||+||+|+|+|||
T Consensus 77 ~~~wdyL~~LGV~~iwl~P~~~SGgi~g~~~tP~~D~gyDi~d-~~Idp~~GT~eDf~~L~~~Ah~~G~~vi~DlVpnHT 155 (688)
T TIGR02455 77 DALWKALSEIGVQGIHNGPIKLSGGIRGREFTPSIDGNFDRIS-FDIDPLLGSEEELIQLSRMAAAHNAITIDDIIPAHT 155 (688)
T ss_pred hHHHHHHHHhCCCEEEeCcceecccccccCCCCCCCCCCCccc-CccCcccCCHHHHHHHHHHHHHCCCEEEEEeCCCCC
Confidence 45669999999999999999999 53 68999999 699999999999999999999999999999999999
Q ss_pred cCCCCCCCC---cCcCCCC-------CCCCCC----------C----------------------CCcc--------cC-
Q 021281 116 VGTTQGHGG---KYNRYDG-------IPLSWD----------E----------------------HAVT--------SC- 144 (314)
Q Consensus 116 ~~~~~~~~~---~y~~f~~-------~~~~~~----------~----------------------~~~~--------~~- 144 (314)
|..++ +.- .+.+|.+ +..+|+ . ..++ .|
T Consensus 156 s~ghd-F~lAr~~~~~Y~g~Y~mvei~~~~W~vwpd~~~~~~~~~l~~~~~~~L~~~g~i~~~l~rviF~~pg~e~s~Wt 234 (688)
T TIGR02455 156 GKGAD-FRLAELAHGDYPGLYHMVEIREEDWALLPEVPAGRDAVNLLPAQCDELKAKHYIVGQLQRVIFFEPGIKDTDWS 234 (688)
T ss_pred CCCcc-hHHHhhcCCCCCCceeeccccccccccCCCCCcccccccccHHHHHHHhhccCcccccccceecCCCcccCCce
Confidence 99987 210 0111111 000111 0 0000 00
Q ss_pred -C------CC--CccccCCCCCCCCCCCCCCCHH--HHHHHH-HHHHHHHHhCCCCEEEeccCCCC-------------C
Q 021281 145 -T------GG--LGNGSTGDNFHGVPNIDHTQHF--VRKDII-AWLRWLRNTVGFQDFRFDFARGY-------------S 199 (314)
Q Consensus 145 -~------~~--~~~~~~~~~~~~~~dln~~~p~--v~~~l~-~~~~~w~~~~gvDGfRlDaa~~i-------------~ 199 (314)
+ || ..+++...++.+.|+||+.||. ||+.|+ +++.+|+ ++|++|||+||+..+ .
T Consensus 235 ~d~~v~g~dG~~Rrw~Y~H~F~~~QPdLNw~dPs~av~~~~~gdal~~w~-~lG~~GfRLDAvpfLg~e~~~~~~~~~e~ 313 (688)
T TIGR02455 235 ATGEITGVDGKTRRWVYLHYFKEGQPSLNWLDPTFAAQQLIIGDALHAID-CLGARGLRLDANGFLGVERRAEGTAWSEG 313 (688)
T ss_pred ecccccCCCccchhhhhhhhccCCCCccCccCccHHHHHHHHHHHHHHHH-HhccccceeccccceeeecCCCCCCCCcc
Confidence 0 11 1233456678999999999999 999999 8999999 999999999997543 2
Q ss_pred HHHHHHHHHhh-----C-CCeEEEcccCCCCCCCCCCCCccchhHHHHhhhhccCCCcceeeChhhHHHHHHHH-ccchh
Q 021281 200 AKYVKEYIEGA-----R-PIFSVGEYWDSCNYNSHGLDYNQDSHRQRIINWIDGTGQLSAAFDFTTKGILQEAV-KGQFW 272 (314)
Q Consensus 200 ~~f~~~~~~~~-----~-~~~~~gE~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~df~l~~~l~~~~-~g~~~ 272 (314)
..+.+...+.+ + ..++++|.... ...+..|+. ++++..|||....++.-++ .|+..
T Consensus 314 h~ll~~~r~~l~~~~r~~Gg~ll~E~nl~---------------~~d~~~~~g--~~~dl~~dF~t~p~~~~AL~tgda~ 376 (688)
T TIGR02455 314 HPLSLTGNQLIAGAIRKAGGFSFQELNLT---------------IDDIAAMSH--GGADLSYDFITRPAYHHALLTGDTE 376 (688)
T ss_pred CHHHHHHHHHHHHhhhcCCeeEeeeccCC---------------HHHHHHHhC--CCcceeecccccHHHHHHHHcCCHH
Confidence 35544444332 2 36899996432 456778887 3799999999999999998 78777
Q ss_pred HHHhhhCCCCCCccccCCceeeccCCCCC
Q 021281 273 RLRDAQGKPPGVMGWWPSRAVTFLDNHDT 301 (314)
Q Consensus 273 ~l~~~~~~~~~~~~~~p~~~v~F~~NHD~ 301 (314)
.++..+..... .+-.+...++|+.|||.
T Consensus 377 pLr~~L~~~~~-~gid~~~~~~~LrNHDE 404 (688)
T TIGR02455 377 FLRLMLKEMHA-FGIDPASLIHALQNHDE 404 (688)
T ss_pred HHHHHHHhhhc-CCCCchhhhhhccCccc
Confidence 77766652211 12234578999999998
No 31
>TIGR02103 pullul_strch alpha-1,6-glucosidases, pullulanase-type. Members of this protein family include secreted (or membrane-anchored) pullulanases of Gram-negative bacteria and pullulanase-type starch debranching enzymes of plants. Both enzymes hydrolyze alpha-1,6 glycosidic linkages. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. This family is closely homologous to, but architecturally different from, the Gram-positive pullulanases of Gram-positive bacteria (TIGR02102).
Probab=99.97 E-value=3.6e-31 Score=272.50 Aligned_cols=189 Identities=16% Similarity=0.225 Sum_probs=146.2
Q ss_pred CCceeEEEEeeCCCCC---------CchHHHHHHh-------hhHHHHcCCCEEEeCCCCCCC-----------------
Q 021281 23 NGREILFQGFNWESCK---------HDWWRNLERK-------VPDISKSGFTSVWLPPATHSF----------------- 69 (314)
Q Consensus 23 ~~~~~i~q~F~w~~~~---------~g~~~gi~~~-------ldyl~~lG~~~I~l~Pi~~~~----------------- 69 (314)
..+.|||++..+++.. .|+|.+++++ |.+|++||||+|+|+|+++..
T Consensus 250 ~~d~iIYElHVRDFS~~d~s~~~~~rGtYla~tE~~t~gi~hLk~L~eLGVThVeLLPv~df~tvdE~~~~~~~~~~~~~ 329 (898)
T TIGR02103 250 FADMVLYELHIRDFSANDESVPAELRGKYLAFTAADSAGVQHLKKLADAGVTHLHLLPTFDIATVNEEKEKVADIQQPFS 329 (898)
T ss_pred CcccEEEEEeccccccCCCCCCcCcCceeeehhccchhhhHHHHHHHhCCCcEEEEcChhhcCccccccccccccccchh
Confidence 3467999999987752 2688888775 667778899999999998542
Q ss_pred -----------------------------------------------CCCCCCcccCCCcCCCCCCH-------HHHHHH
Q 021281 70 -----------------------------------------------APEGYLPQNLYSLNSSYGSE-------HLLKAL 95 (314)
Q Consensus 70 -----------------------------------------------~~~gY~~~d~~~id~~~Gt~-------~df~~l 95 (314)
.++||+|..|+.++.+|++. .+||+|
T Consensus 330 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~v~~~~~~d~yNWGYDP~~y~aPegSYatdp~g~~Ri~Efk~m 409 (898)
T TIGR02103 330 KLCELNPDSKSSEFAGYCDSGSQLKQNDSKDNPEVQALNTLVRNLDSYNWGYDPFHYTVPEGSYATDPEGPARIKEFREM 409 (898)
T ss_pred hhhccccccccccccccccccccccccccccchhhhhhhhhhccCCCCCCCCCCcccCCcChhhccCCCCchHHHHHHHH
Confidence 15899999999999999983 699999
Q ss_pred HHHHhhCCCEEEEeeeeccccCCCCCCCCcCcCCCCCCCCCCCCCcccCCCCCccccCCCCCCCCCCCCCCCHHHHHHHH
Q 021281 96 LHKMKQHKVRAMADIVINHRVGTTQGHGGKYNRYDGIPLSWDEHAVTSCTGGLGNGSTGDNFHGVPNIDHTQHFVRKDII 175 (314)
Q Consensus 96 v~~ah~~Gi~VilD~V~NH~~~~~~~~~~~y~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~~p~v~~~l~ 175 (314)
|++||++||+||||+|+||++..++.....+..... ..++.. ..++.. . ......+++.++|+||++|+
T Consensus 410 V~alH~~Gi~VIlDVVyNHt~~~g~~~~s~ld~~~P--~YY~r~----~~~G~~--~---n~~~~~d~a~e~~~Vrk~ii 478 (898)
T TIGR02103 410 VQALNKTGLNVVMDVVYNHTNASGPNDRSVLDKIVP--GYYHRL----NEDGGV--E---NSTCCSNTATEHRMMAKLIV 478 (898)
T ss_pred HHHHHHCCCEEEEEeecccccccCccCcccccccCc--HhhEee----CCCCCe--e---cCCCCcCCCCCCHHHHHHHH
Confidence 999999999999999999999876643322221110 011100 001110 0 11233578999999999999
Q ss_pred HHHHHHHHhCCCCEEEeccCCCCCHHHHHHHHHhhC---C-CeEEEcccCC
Q 021281 176 AWLRWLRNTVGFQDFRFDFARGYSAKYVKEYIEGAR---P-IFSVGEYWDS 222 (314)
Q Consensus 176 ~~~~~w~~~~gvDGfRlDaa~~i~~~f~~~~~~~~~---~-~~~~gE~~~~ 222 (314)
+.+++|++++||||||||+++|++.+||+++.++++ | .|++||.|+.
T Consensus 479 Dsl~~W~~ey~VDGFRfDlm~~~~~~f~~~~~~~l~~i~pdi~l~GEgW~~ 529 (898)
T TIGR02103 479 DSLVVWAKDYKVDGFRFDLMGHHPKAQMLAAREAIKALTPEIYFYGEGWDF 529 (898)
T ss_pred HHHHHHHHHcCCCEEEEechhhCCHHHHHHHHHHHHHhCCCEEEEecCCCc
Confidence 999999999999999999999999999999988754 4 6899999985
No 32
>COG0296 GlgB 1,4-alpha-glucan branching enzyme [Carbohydrate transport and metabolism]
Probab=99.97 E-value=7.8e-31 Score=259.66 Aligned_cols=185 Identities=18% Similarity=0.218 Sum_probs=139.6
Q ss_pred ceeEEEEeeCCCCC---CchHHHHHHhhhHHHHcCCCEEEeCCCCCCC--CCCCCCcccCCCcCCCCCCHHHHHHHHHHH
Q 021281 25 REILFQGFNWESCK---HDWWRNLERKVPDISKSGFTSVWLPPATHSF--APEGYLPQNLYSLNSSYGSEHLLKALLHKM 99 (314)
Q Consensus 25 ~~~i~q~F~w~~~~---~g~~~gi~~~ldyl~~lG~~~I~l~Pi~~~~--~~~gY~~~d~~~id~~~Gt~~df~~lv~~a 99 (314)
.-+||++-.=+... .|+++.++++|+||++||||+|.||||.+.+ .++||+++-||++..+|||+++||+||++|
T Consensus 144 ~~vIYElHvGs~~~~~~~~~~e~a~~llpYl~elG~T~IELMPv~e~p~~~sWGYq~~g~yAp~sryGtPedfk~fVD~a 223 (628)
T COG0296 144 PIVIYELHVGSFTPDRFLGYFELAIELLPYLKELGITHIELMPVAEHPGDRSWGYQGTGYYAPTSRYGTPEDFKALVDAA 223 (628)
T ss_pred CceEEEEEeeeccCCCCcCHHHHHHHHhHHHHHhCCCEEEEcccccCCCCCCCCCCcceeccccccCCCHHHHHHHHHHH
Confidence 36788887744444 5799999999999999999999999999888 689999999999999999999999999999
Q ss_pred hhCCCEEEEeeeeccccCCCCCCCCcCcCCCCCCCCCCCCCcccCCCCCccccCCCCCCCCCCCCCCCHHHHHHHHHHHH
Q 021281 100 KQHKVRAMADIVINHRVGTTQGHGGKYNRYDGIPLSWDEHAVTSCTGGLGNGSTGDNFHGVPNIDHTQHFVRKDIIAWLR 179 (314)
Q Consensus 100 h~~Gi~VilD~V~NH~~~~~~~~~~~y~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~~p~v~~~l~~~~~ 179 (314)
|++||.||||+|+||.+.+... ...|++....-+.... .+.. ..| +..-.|+..++||++|++++.
T Consensus 224 H~~GIgViLD~V~~HF~~d~~~----L~~fdg~~~~e~~~~~----~~~~-----~~W-g~~i~~~gr~EVR~Fll~nal 289 (628)
T COG0296 224 HQAGIGVILDWVPNHFPPDGNY----LARFDGTFLYEHEDPR----RGEH-----TDW-GTAIFNYGRNEVRNFLLANAL 289 (628)
T ss_pred HHcCCEEEEEecCCcCCCCcch----hhhcCCccccccCCcc----cccC-----CCc-ccchhccCcHHHHHHHHHHHH
Confidence 9999999999999999997542 2223321110000000 0110 011 223345668999999999999
Q ss_pred HHHHhCCCCEEEeccCCCCC------------------------HHHHHHHHHhhC---C-CeEEEcccCCC
Q 021281 180 WLRNTVGFQDFRFDFARGYS------------------------AKYVKEYIEGAR---P-IFSVGEYWDSC 223 (314)
Q Consensus 180 ~w~~~~gvDGfRlDaa~~i~------------------------~~f~~~~~~~~~---~-~~~~gE~~~~~ 223 (314)
+|+++|+|||||+|||..+. .+|.+...+.+. | .+.|+|-|.+.
T Consensus 290 ~Wl~~yHiDGlRvDAV~smly~d~~~~~~~~~~n~~ggr~n~~a~efl~~~n~~i~~~~pg~~~iaeestd~ 361 (628)
T COG0296 290 YWLEEYHIDGLRVDAVASMLYLDYSRAEGEWVPNEYGGRENLEAAEFLRNLNSLIHEEEPGAMTIAEESTDD 361 (628)
T ss_pred HHHHHhCCcceeeehhhhhhccchhhhhhcccccccCCcccHHHHHHhhhhhhhhcccCCCceeeeeeccCC
Confidence 99999999999999986542 245555554444 2 57899988873
No 33
>COG1523 PulA Type II secretory pathway, pullulanase PulA and related glycosidases [Carbohydrate transport and metabolism]
Probab=99.97 E-value=2.4e-30 Score=259.87 Aligned_cols=255 Identities=18% Similarity=0.285 Sum_probs=169.6
Q ss_pred ccccCCceeEEEEeeCCCCC---------CchHHHHHHh--hhHHHHcCCCEEEeCCCCCCC-----------CCCCCCc
Q 021281 19 AVIRNGREILFQGFNWESCK---------HDWWRNLERK--VPDISKSGFTSVWLPPATHSF-----------APEGYLP 76 (314)
Q Consensus 19 ~~~~~~~~~i~q~F~w~~~~---------~g~~~gi~~~--ldyl~~lG~~~I~l~Pi~~~~-----------~~~gY~~ 76 (314)
|....++.|||++-.+++.. .|+|.+++++ |+|||+||||+|+|+||+... .++||+|
T Consensus 165 ~~~p~~~~vIYE~HVr~fT~~~~~v~~~~rGTy~gl~~~~~i~yLk~LGvtaVeLLPV~~~~~~~~l~~~gl~n~WGYdP 244 (697)
T COG1523 165 PRIPWEDTVIYEAHVRDFTQLHPGVPEELRGTYLGLAEPVIIDYLKDLGVTAVELLPVFDFYDEPHLDKSGLNNNWGYDP 244 (697)
T ss_pred CCCCccceEEEEeeecccccCCCCCchhhccceehhccccHHHHHHHhCCceEEEecceEEeccccccccccccccCCCc
Confidence 44445678999999998762 1699999999 999999999999999998543 4799999
Q ss_pred ccCCCcCCCCCCH-------HHHHHHHHHHhhCCCEEEEeeeeccccCCCCCCCCcCcCCCC---CCCCCCCCCcccCCC
Q 021281 77 QNLYSLNSSYGSE-------HLLKALLHKMKQHKVRAMADIVINHRVGTTQGHGGKYNRYDG---IPLSWDEHAVTSCTG 146 (314)
Q Consensus 77 ~d~~~id~~~Gt~-------~df~~lv~~ah~~Gi~VilD~V~NH~~~~~~~~~~~y~~f~~---~~~~~~~~~~~~~~~ 146 (314)
..|++++++|-+. .|||.||+++|++||+||||||+|||+..... +.-..|.+ ..+.+.. .+
T Consensus 245 ~~fFAp~~~Yss~p~p~~~i~EfK~mV~~lHkaGI~VILDVVfNHTae~~~~--g~t~~f~~id~~~Yyr~~------~d 316 (697)
T COG1523 245 LNFFAPEGRYASNPEPATRIKEFKDMVKALHKAGIEVILDVVFNHTAEGNEL--GPTLSFRGIDPNYYYRLD------PD 316 (697)
T ss_pred ccccCCCccccCCCCcchHHHHHHHHHHHHHHcCCEEEEEEeccCcccccCc--CcccccccCCcCceEEEC------CC
Confidence 9999999998653 49999999999999999999999999864321 11112222 0011111 11
Q ss_pred CCccccCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCCCCEEEeccCCCCCHHHH-----HHHHHhhC------CCeE
Q 021281 147 GLGNGSTGDNFHGVPNIDHTQHFVRKDIIAWLRWLRNTVGFQDFRFDFARGYSAKYV-----KEYIEGAR------PIFS 215 (314)
Q Consensus 147 ~~~~~~~~~~~~~~~dln~~~p~v~~~l~~~~~~w~~~~gvDGfRlDaa~~i~~~f~-----~~~~~~~~------~~~~ 215 (314)
|.-...+|| ...||.++|.||++|++.+++|+++++|||||+|.+..+..+.. ..++..+. ..-+
T Consensus 317 g~~~N~TGc----GNtln~~hpmvrk~ivDsLrYWv~e~hVDGFRFDLa~~l~r~~~~~~~~~~l~~~~~~~p~l~~~kl 392 (697)
T COG1523 317 GYYSNGTGC----GNTLNTEHPMVRKLIVDSLRYWVEEYHVDGFRFDLAGVLGRETMLFDINANLFLAGEGDPVLSGVKL 392 (697)
T ss_pred CCeecCCcc----CcccccCChHHHHHHHHHHHHHHHHhCCCceeecchhhccccccccccCcchhhhccCCccccCcee
Confidence 211112333 34689999999999999999999999999999999987766554 11222221 1346
Q ss_pred EEcccCCC--CCCCCCCCCccchhHHHHhhhhccCCCcceeeChhhHHHHHHHHccchh---HHHhhhCCCCCC---ccc
Q 021281 216 VGEYWDSC--NYNSHGLDYNQDSHRQRIINWIDGTGQLSAAFDFTTKGILQEAVKGQFW---RLRDAQGKPPGV---MGW 287 (314)
Q Consensus 216 ~gE~~~~~--~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~df~l~~~l~~~~~g~~~---~l~~~~~~~~~~---~~~ 287 (314)
+||-|+.. .|+-|.. + + ....+..+-.++..++.+.+|+.. .+...+..+..+ ...
T Consensus 393 iAepwD~g~~gyqvG~F--p-d-------------~~~~aewng~~rD~vr~F~~G~~~~~~~~a~rl~gS~d~~~~~~~ 456 (697)
T COG1523 393 IAEPWDIGPGGYQVGNF--P-D-------------SPRWAEWNGRFRDDVRRFWRGDAGLVGEFAKRLAGSSDLYKRNGR 456 (697)
T ss_pred eecchhhcCCCcccccC--C-C-------------ccchhhhCCcccccccceeeCCCccHHHHHHHhhcCcchhhccCC
Confidence 77777642 1221110 0 0 011234445566777777766422 222222111111 234
Q ss_pred cCCceeeccCCCCC
Q 021281 288 WPSRAVTFLDNHDT 301 (314)
Q Consensus 288 ~p~~~v~F~~NHD~ 301 (314)
.|+..|+||..||.
T Consensus 457 ~p~~sINyv~aHDg 470 (697)
T COG1523 457 RPSQSINYVTAHDG 470 (697)
T ss_pred CccceeeEEeecCC
Confidence 68899999999995
No 34
>PLN02877 alpha-amylase/limit dextrinase
Probab=99.97 E-value=2.7e-29 Score=258.49 Aligned_cols=188 Identities=16% Similarity=0.184 Sum_probs=141.0
Q ss_pred CceeEEEEeeCCCCCC---------chHHHHHHh-------hhHHHHcCCCEEEeCCCCCCC------------------
Q 021281 24 GREILFQGFNWESCKH---------DWWRNLERK-------VPDISKSGFTSVWLPPATHSF------------------ 69 (314)
Q Consensus 24 ~~~~i~q~F~w~~~~~---------g~~~gi~~~-------ldyl~~lG~~~I~l~Pi~~~~------------------ 69 (314)
.+.|||++..+++... |+|.+++++ |+||++||||+|+|+|+++..
T Consensus 338 ~D~VIYElHVRDFS~~d~sv~~~~RGtylgftE~~s~gi~hLk~LkelGVThVeLLPvfDf~tvdE~~~~~~~~~~~~l~ 417 (970)
T PLN02877 338 SDISIYELHVRDFSANDETVHPDFRGGYLAFTSQDSAGVLHLKKLADAGLTHVHLLPTFQFGSVDDEKENWKCVDPKELE 417 (970)
T ss_pred cccEEEEEeccccccCCCCCCcCCCCcchhhhhhhhhHHHHHHHHHHcCCCEEEeCCccccCCcccccccccccccchhc
Confidence 4679999999987642 688888776 677777799999999998642
Q ss_pred ---------------------CCCCCCcccCCCcCCCCCCH-------HHHHHHHHHHhhCCCEEEEeeeeccccCCCCC
Q 021281 70 ---------------------APEGYLPQNLYSLNSSYGSE-------HLLKALLHKMKQHKVRAMADIVINHRVGTTQG 121 (314)
Q Consensus 70 ---------------------~~~gY~~~d~~~id~~~Gt~-------~df~~lv~~ah~~Gi~VilD~V~NH~~~~~~~ 121 (314)
.++||+|..|+.++++|+|. .+||+||++||++||+||||+|+||++..+++
T Consensus 418 ~~~~~s~~~q~~v~~~~~~d~yNWGYDP~~YfaPEgSYatdP~g~~RI~efk~mV~~lH~~GI~VImDVVyNHt~~~g~~ 497 (970)
T PLN02877 418 KLPPDSEEQQAAITAIQDDDGYNWGYNPVLWGVPKGSYASNPDGPCRIIEFRKMVQALNRIGLRVVLDVVYNHLHSSGPF 497 (970)
T ss_pred cccccchhhhhcccccccCCCCCCCCCccccCCCCcccccCCCCcchHHHHHHHHHHHHHCCCEEEEEECCccccCCCCc
Confidence 35899999999999999982 47999999999999999999999999876553
Q ss_pred CC-CcCcCCCCCCCCCCCCCcccCCCCCccccCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCCCCEEEeccCCCCCH
Q 021281 122 HG-GKYNRYDGIPLSWDEHAVTSCTGGLGNGSTGDNFHGVPNIDHTQHFVRKDIIAWLRWLRNTVGFQDFRFDFARGYSA 200 (314)
Q Consensus 122 ~~-~~y~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~~p~v~~~l~~~~~~w~~~~gvDGfRlDaa~~i~~ 200 (314)
.. ..+..... .+.+.. ..+|.. .. .....+.+.+++.||++|++.+++|+++|||||||||++.+++.
T Consensus 498 ~~~s~ld~~vP-~YY~r~-----~~~G~~-~n----s~c~n~~Ase~~mvrklIlDsl~yW~~ey~VDGFRFDlmg~i~~ 566 (970)
T PLN02877 498 DENSVLDKIVP-GYYLRR-----NSDGFI-EN----STCVNNTASEHYMVDRLIVDDLLNWAVNYKVDGFRFDLMGHLMK 566 (970)
T ss_pred chhhcccCCCC-CceEEE-----CCCCCc-cc----CCccCCCccCCHHHHHHHHHHHHHHHHHhCCCEEEEEccccccH
Confidence 22 11111110 000000 001110 00 11234567899999999999999999999999999999999999
Q ss_pred HHHHHHHHh---h---------CCCeEEEcccCC
Q 021281 201 KYVKEYIEG---A---------RPIFSVGEYWDS 222 (314)
Q Consensus 201 ~f~~~~~~~---~---------~~~~~~gE~~~~ 222 (314)
+.|.++.++ + +..+++||.|+.
T Consensus 567 ~tm~~~~~~L~~i~~~~~~~dg~~i~lyGEgW~~ 600 (970)
T PLN02877 567 RTMVRAKDALQSLTLERDGVDGSSIYLYGEGWDF 600 (970)
T ss_pred HHHHHHHHHHHHHhhhhcccCCCceEEEEeCCCC
Confidence 988776544 3 126899999985
No 35
>TIGR02401 trehalose_TreY malto-oligosyltrehalose synthase. This enzyme, formally named (1-4)-alpha-D-glucan 1-alpha-D-glucosylmutase, is the TreY enzyme of the TreYZ pathway of trehalose biosynthesis, an alternative to the OtsAB pathway. Trehalose may be incorporated into more complex compounds but is best known as compatible solute. It is one of the most effective osmoprotectants, and unlike the various betaines does not require nitrogen for its synthesis.
Probab=99.96 E-value=4e-29 Score=254.14 Aligned_cols=182 Identities=18% Similarity=0.213 Sum_probs=143.2
Q ss_pred CchHHHHHHhhhHHHHcCCCEEEeCCCCCCC--CCCCCCcccCCCcCCCCCCHHHHHHHHHHHhhCCCEEEEeeeecccc
Q 021281 39 HDWWRNLERKVPDISKSGFTSVWLPPATHSF--APEGYLPQNLYSLNSSYGSEHLLKALLHKMKQHKVRAMADIVINHRV 116 (314)
Q Consensus 39 ~g~~~gi~~~ldyl~~lG~~~I~l~Pi~~~~--~~~gY~~~d~~~id~~~Gt~~df~~lv~~ah~~Gi~VilD~V~NH~~ 116 (314)
+++|++++++|+||++|||++|||+||+++. ++|||++.||+.|+|+|||.++|++||++||++||+||+|+|+||||
T Consensus 12 ~~tf~~~~~~L~YL~~LGv~~V~lsPi~~a~~gs~hGYdv~D~~~idp~lGt~edf~~Lv~aah~~Gm~vIlDiVpNH~a 91 (825)
T TIGR02401 12 GFTFDDAAALLPYLKSLGVSHLYLSPILTAVPGSTHGYDVVDHSEINPELGGEEGLRRLSEAARARGLGLIVDIVPNHMA 91 (825)
T ss_pred CCCHHHHHHhhHHHHHcCCCEEEeCcCccCCCCCCCCCCCCCCCCcCCCCCCHHHHHHHHHHHHHCCCEEEEEecccccc
Confidence 4589999999999999999999999999864 68999999999999999999999999999999999999999999999
Q ss_pred CC---CCCC--------CCcCcCCCCCCCCCCCC------------------------------------------C-cc
Q 021281 117 GT---TQGH--------GGKYNRYDGIPLSWDEH------------------------------------------A-VT 142 (314)
Q Consensus 117 ~~---~~~~--------~~~y~~f~~~~~~~~~~------------------------------------------~-~~ 142 (314)
.. ++|+ .+.|..|-. .+|++. + +.
T Consensus 92 ~~~~~n~wf~dvl~~g~~S~y~~~Fd--idw~~~~~~gkvllP~Lg~~y~~~l~~g~l~l~~d~~~~~~l~y~~~~~Pi~ 169 (825)
T TIGR02401 92 VHLEQNPWWWDVLKNGPSSAYAEYFD--IDWDPLGGDGKLLLPILGDQYGAVLDRGEIKLRFDGDGTLALRYYDHRLPLA 169 (825)
T ss_pred cccccChHHHHHHHhCCCCCccCceE--EeCCCCCCCCceeecccCchhhhHHhcCceeeeecCCCceeEEecCccCCcC
Confidence 86 3332 122322111 223221 0 00
Q ss_pred --cC----------CC----------------------CCccccCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCCCC
Q 021281 143 --SC----------TG----------------------GLGNGSTGDNFHGVPNIDHTQHFVRKDIIAWLRWLRNTVGFQ 188 (314)
Q Consensus 143 --~~----------~~----------------------~~~~~~~~~~~~~~~dln~~~p~v~~~l~~~~~~w~~~~gvD 188 (314)
.+ .+ ..-++-..+...+++.|+.++|+|.+...+++..|+++.-||
T Consensus 170 p~ty~~il~~~~~~~~~~~l~~ll~~Q~yRL~~Wr~a~~~inYRrFf~i~~L~~lr~E~~~Vf~~~h~~i~~lv~~g~vd 249 (825)
T TIGR02401 170 PGTLPELEVLEDVPGDGDALKKLLERQHYRLTWWRVAAGEINYRRFFDINDLAGVRVEDPAVFDATHRLVLELVAEGLVD 249 (825)
T ss_pred ccchhhhhhhccccCChhhHHHHHHHHHHHhhhhhccccccCcccccCccccccccCCCHHHHHHHHHHHHHHHHcCCCc
Confidence 00 00 000111223457899999999999999999999999555599
Q ss_pred EEEeccCCCC--CHHHHHHHHHhhCC-CeEEEc-ccCC
Q 021281 189 DFRFDFARGY--SAKYVKEYIEGARP-IFSVGE-YWDS 222 (314)
Q Consensus 189 GfRlDaa~~i--~~~f~~~~~~~~~~-~~~~gE-~~~~ 222 (314)
|+|+|+++++ |..||+.+.+.+++ .|++.| ++..
T Consensus 250 GlRIDh~dGL~dP~~Yl~rLr~~~~~~~yivvEKIl~~ 287 (825)
T TIGR02401 250 GLRIDHIDGLADPEGYLRRLRELVGPARYLVVEKILAP 287 (825)
T ss_pred eEEeccccccCChHHHHHHHHHhcCCCceEEEEEeccC
Confidence 9999999999 88999999988886 788888 6665
No 36
>smart00642 Aamy Alpha-amylase domain.
Probab=99.94 E-value=7.4e-27 Score=199.06 Aligned_cols=92 Identities=21% Similarity=0.350 Sum_probs=87.2
Q ss_pred eeEEEEeeCCCCCC-chHHHHHHhhhHHHHcCCCEEEeCCCCCCC----CCCCCCcccCCCcCCCCCCHHHHHHHHHHHh
Q 021281 26 EILFQGFNWESCKH-DWWRNLERKVPDISKSGFTSVWLPPATHSF----APEGYLPQNLYSLNSSYGSEHLLKALLHKMK 100 (314)
Q Consensus 26 ~~i~q~F~w~~~~~-g~~~gi~~~ldyl~~lG~~~I~l~Pi~~~~----~~~gY~~~d~~~id~~~Gt~~df~~lv~~ah 100 (314)
+|++|.|.|..+.+ |+|++++++|+||++|||++|||+||+++. +++||++.||++++|+|||+++|++||++||
T Consensus 1 qi~~~~F~~~~~~~~G~~~gi~~~l~yl~~lG~~~I~l~Pi~~~~~~~~~~~gY~~~d~~~i~~~~Gt~~d~~~lv~~~h 80 (166)
T smart00642 1 QIYPDRFADGNGDGGGDLQGIIEKLDYLKDLGVTAIWLSPIFESPQGYPSYHGYDISDYKQIDPRFGTMEDFKELVDAAH 80 (166)
T ss_pred CeeeccccCCCCCCCcCHHHHHHHHHHHHHCCCCEEEECcceeCCCCCCCCCCcCccccCCCCcccCCHHHHHHHHHHHH
Confidence 47899999976665 599999999999999999999999999988 6899999999999999999999999999999
Q ss_pred hCCCEEEEeeeeccccC
Q 021281 101 QHKVRAMADIVINHRVG 117 (314)
Q Consensus 101 ~~Gi~VilD~V~NH~~~ 117 (314)
++||+||+|+|+||++.
T Consensus 81 ~~Gi~vilD~V~NH~~~ 97 (166)
T smart00642 81 ARGIKVILDVVINHTSD 97 (166)
T ss_pred HCCCEEEEEECCCCCCC
Confidence 99999999999999997
No 37
>KOG0470 consensus 1,4-alpha-glucan branching enzyme/starch branching enzyme II [Carbohydrate transport and metabolism]
Probab=99.94 E-value=4.8e-26 Score=224.45 Aligned_cols=160 Identities=21% Similarity=0.354 Sum_probs=127.6
Q ss_pred ceeEEEEeeCCCCCC----ch---HHHHHHh-hhHHHHcCCCEEEeCCCCCCC---CCCCCCcccCCCcCCCCCCHH---
Q 021281 25 REILFQGFNWESCKH----DW---WRNLERK-VPDISKSGFTSVWLPPATHSF---APEGYLPQNLYSLNSSYGSEH--- 90 (314)
Q Consensus 25 ~~~i~q~F~w~~~~~----g~---~~gi~~~-ldyl~~lG~~~I~l~Pi~~~~---~~~gY~~~d~~~id~~~Gt~~--- 90 (314)
+=.||.+-.+.+... .+ |.+.+++ |++||+||+|+|+|+||++.. ..+||.|++|++...+|||.+
T Consensus 229 sL~IYE~HVrgfS~~E~~v~~~~gY~~FteKvlphlK~LG~NaiqLmpi~Ef~~~~~s~GY~~~nFFapssrYgt~~s~~ 308 (757)
T KOG0470|consen 229 SLRIYELHVRGFSSHESKVNTRGGYLGFTEKVLPHLKKLGYNAIQLMPIFEFGHYYASWGYQVTNFFAPSSRYGTPESPC 308 (757)
T ss_pred heEEEEEeeccccCCCCccccccchhhhhhhhhhHHHHhCccceEEeehhhhhhhhhccCcceeEeecccccccCCCccc
Confidence 456999888766543 16 9999999 999999999999999999984 378999999999999999999
Q ss_pred ---HHHHHHHHHhhCCCEEEEeeeeccccCCCCCCCCcCcCCCCC--CCCCCCCCcccCCCCCccccCCCCCCCCCCCCC
Q 021281 91 ---LLKALLHKMKQHKVRAMADIVINHRVGTTQGHGGKYNRYDGI--PLSWDEHAVTSCTGGLGNGSTGDNFHGVPNIDH 165 (314)
Q Consensus 91 ---df~~lv~~ah~~Gi~VilD~V~NH~~~~~~~~~~~y~~f~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~ 165 (314)
+||.||++||.+||.|+||||.||++.+.. +.+.-|++. ...++.. ..+. .......-+|+
T Consensus 309 ri~efK~lVd~aHs~GI~VlLDVV~sHaa~n~~---d~l~~fdGid~~~Yf~~~-------~r~~----h~~~~~r~fn~ 374 (757)
T KOG0470|consen 309 RINEFKELVDKAHSLGIEVLLDVVHSHAAKNSK---DGLNMFDGIDNSVYFHSG-------PRGY----HNSWCSRLFNY 374 (757)
T ss_pred chHHHHHHHHHHhhCCcEEehhhhhhhcccCcC---CcchhccCcCCceEEEeC-------Cccc----ccccccccccC
Confidence 999999999999999999999999998332 233334441 1111111 0111 12234566899
Q ss_pred CCHHHHHHHHHHHHHHHHhCCCCEEEeccCCCC
Q 021281 166 TQHFVRKDIIAWLRWLRNTVGFQDFRFDFARGY 198 (314)
Q Consensus 166 ~~p~v~~~l~~~~~~w~~~~gvDGfRlDaa~~i 198 (314)
++|+|+++|++.++||+.+|+|||||+|.+.++
T Consensus 375 ~~~~V~rflL~nLr~WVtEY~vDGFRFD~~ssm 407 (757)
T KOG0470|consen 375 NHPVVLRFLLSNLRWWVTEYHVDGFRFDLVSSM 407 (757)
T ss_pred CCHHHHHHHHHHHHHHHHheeccceEEcchhhh
Confidence 999999999999999999999999999998543
No 38
>PRK14511 maltooligosyl trehalose synthase; Provisional
Probab=99.91 E-value=2.1e-23 Score=213.41 Aligned_cols=178 Identities=18% Similarity=0.233 Sum_probs=135.7
Q ss_pred chHHHHHHhhhHHHHcCCCEEEeCCCCCCC--CCCCCCcccCCCcCCCCCCHHHHHHHHHHHhhCCCEEEEeeeeccccC
Q 021281 40 DWWRNLERKVPDISKSGFTSVWLPPATHSF--APEGYLPQNLYSLNSSYGSEHLLKALLHKMKQHKVRAMADIVINHRVG 117 (314)
Q Consensus 40 g~~~gi~~~ldyl~~lG~~~I~l~Pi~~~~--~~~gY~~~d~~~id~~~Gt~~df~~lv~~ah~~Gi~VilD~V~NH~~~ 117 (314)
.+|++++++|+||++|||++|||+||+++. ++|||++.||++|||++|+.++|++||++||++||+||+|+|+||||.
T Consensus 17 ~tf~~~~~~l~YL~~LGis~IyLsPi~~a~~gs~hGYdv~D~~~idp~lGt~e~f~~Lv~aah~~Gi~VIlDiV~NH~~~ 96 (879)
T PRK14511 17 FTFDDAAELVPYFADLGVSHLYLSPILAARPGSTHGYDVVDHTRINPELGGEEGLRRLAAALRAHGMGLILDIVPNHMAV 96 (879)
T ss_pred CCHHHHHHHhHHHHHcCCCEEEECcCccCCCCCCCCCCcCCCCCcCCCCCCHHHHHHHHHHHHHCCCEEEEEeccccccC
Confidence 479999999999999999999999999875 789999999999999999999999999999999999999999999998
Q ss_pred CCC---C--------CCCcCcCCCCCCCCCCCC-----------------------------------------Ccc--c
Q 021281 118 TTQ---G--------HGGKYNRYDGIPLSWDEH-----------------------------------------AVT--S 143 (314)
Q Consensus 118 ~~~---~--------~~~~y~~f~~~~~~~~~~-----------------------------------------~~~--~ 143 (314)
.++ | ....|..|-. .+|++. .+. .
T Consensus 97 ~~~~n~ww~dvl~~g~~S~y~~~Fd--idw~~~~g~~llP~LG~~y~~~l~~g~l~l~~~~~g~~~~~y~d~~fPl~p~t 174 (879)
T PRK14511 97 GGPDNPWWWDVLEWGRSSPYADFFD--IDWDSGEGKVLLPVLGDQYGEVLAAGELRLAFDDDGAFVLRYYDHRFPIAPGT 174 (879)
T ss_pred cCccCHHHHHHHHhCCCCCccCcee--eeecCCCCceecCccCCcccchhhCCceEEeecCCCceEEEEcCccCCCCCCc
Confidence 763 1 1122222110 122210 000 0
Q ss_pred CC------------------------------------------------CC----------------------------
Q 021281 144 CT------------------------------------------------GG---------------------------- 147 (314)
Q Consensus 144 ~~------------------------------------------------~~---------------------------- 147 (314)
+. |+
T Consensus 175 ~~~il~~~~~~~~l~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~l~~~n~~~~~~~~~L~~ll~~Q~YRLa~Wr~a~~ 254 (879)
T PRK14511 175 YALILRHRLDLEALAAEFPALGELESILTAAQHLASPAVRAFIEQALAAFDGRKGDGRSRLDRLLERQHYRLASWRVADD 254 (879)
T ss_pred hhhhhhcchhHHHHHHHHhhhhcccchhhHHHhhcChHHHHHHHHHHHHhcCCCCchhhhHHHHHHhcceeccchhccCc
Confidence 00 00
Q ss_pred CccccCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCCCCEEEeccCCCC--CHHHHHHHHHhhC-CCeEEEcc
Q 021281 148 LGNGSTGDNFHGVPNIDHTQHFVRKDIIAWLRWLRNTVGFQDFRFDFARGY--SAKYVKEYIEGAR-PIFSVGEY 219 (314)
Q Consensus 148 ~~~~~~~~~~~~~~dln~~~p~v~~~l~~~~~~w~~~~gvDGfRlDaa~~i--~~~f~~~~~~~~~-~~~~~gE~ 219 (314)
.-++-..++..++.-++.++|+|.+...+.+..|+++=-|||+|+|.+..+ |..+++.+.+... +.|++.|=
T Consensus 255 eiNYRRFFdIn~L~~lRvE~~~VF~~tH~li~~L~~~G~vdGlRIDHiDGL~DP~~Yl~rLr~~~~~~~yivvEK 329 (879)
T PRK14511 255 EINYRRFFDVNTLAAVRVEDPEVFEETHALILRLLREGLVDGLRIDHPDGLADPRGYLRRLRRRTGRGAYIVVEK 329 (879)
T ss_pred ccCcceeecchhheeeecCCHHHHHHHHHHHHHHHHCCCCCeEEeCCCccccCHHHHHHHHHhccCCCCeEEEEe
Confidence 000011223456667778999999999999999998888999999999987 5689999977654 67888883
No 39
>PLN03244 alpha-amylase; Provisional
Probab=99.88 E-value=3e-22 Score=200.51 Aligned_cols=107 Identities=18% Similarity=0.242 Sum_probs=81.9
Q ss_pred CcccCCCcCCCCCCHHHHHHHHHHHhhCCCEEEEeeeeccccCCCCCCCCcCcCCCCCC-CCCCCCCcccCCCCCccccC
Q 021281 75 LPQNLYSLNSSYGSEHLLKALLHKMKQHKVRAMADIVINHRVGTTQGHGGKYNRYDGIP-LSWDEHAVTSCTGGLGNGST 153 (314)
Q Consensus 75 ~~~d~~~id~~~Gt~~df~~lv~~ah~~Gi~VilD~V~NH~~~~~~~~~~~y~~f~~~~-~~~~~~~~~~~~~~~~~~~~ 153 (314)
.+++||+++++|||++|||+||++||++||+||||+|+||++.+.... ...|.+.. ..++.. ..+..
T Consensus 426 ~vt~fFApssRYGTPeDLK~LVD~aH~~GI~VILDvV~NH~~~d~~~G---L~~fDGt~~~Yf~~~-----~~g~~---- 493 (872)
T PLN03244 426 KVTNFFAASSRYGTPDDFKRLVDEAHGLGLLVFLDIVHSYAAADEMVG---LSLFDGSNDCYFHTG-----KRGHH---- 493 (872)
T ss_pred ccCcccccCcccCCHHHHHHHHHHHHHCCCEEEEEecCccCCCccccc---hhhcCCCccceeccC-----CCCcc----
Confidence 488999999999999999999999999999999999999999865311 11233211 111110 01110
Q ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCCCCEEEeccC
Q 021281 154 GDNFHGVPNIDHTQHFVRKDIIAWLRWLRNTVGFQDFRFDFA 195 (314)
Q Consensus 154 ~~~~~~~~dln~~~p~v~~~l~~~~~~w~~~~gvDGfRlDaa 195 (314)
..| +...+|+.+++||++|++++++|+++++|||||+|++
T Consensus 494 -~~W-Gs~~fnyg~~EVr~FLLsna~yWleEyhIDGFRfDaV 533 (872)
T PLN03244 494 -KHW-GTRMFKYGDLDVLHFLISNLNWWITEYQIDGFQFHSL 533 (872)
T ss_pred -CCC-CCceecCCCHHHHHHHHHHHHHHHHHhCcCcceeecc
Confidence 112 3467899999999999999999999999999999998
No 40
>PRK14507 putative bifunctional 4-alpha-glucanotransferase/malto-oligosyltrehalose synthase; Provisional
Probab=99.87 E-value=2.1e-21 Score=209.26 Aligned_cols=79 Identities=22% Similarity=0.298 Sum_probs=75.7
Q ss_pred CchHHHHHHhhhHHHHcCCCEEEeCCCCCCC--CCCCCCcccCCCcCCCCCCHHHHHHHHHHHhhCCCEEEEeeeecccc
Q 021281 39 HDWWRNLERKVPDISKSGFTSVWLPPATHSF--APEGYLPQNLYSLNSSYGSEHLLKALLHKMKQHKVRAMADIVINHRV 116 (314)
Q Consensus 39 ~g~~~gi~~~ldyl~~lG~~~I~l~Pi~~~~--~~~gY~~~d~~~id~~~Gt~~df~~lv~~ah~~Gi~VilD~V~NH~~ 116 (314)
+++|++++++|+||++|||++|||+||+++. ++|||++.||++|+|+|||.++|++||++||++||+||+|+|+|||+
T Consensus 754 ~~tf~~~~~~l~Yl~~LGv~~i~lsPi~~a~~gs~hGYdv~D~~~idp~lG~~edf~~Lv~~ah~~Gi~vilDiV~NH~~ 833 (1693)
T PRK14507 754 DFTFADAEAILPYLAALGISHVYASPILKARPGSTHGYDIVDHSQINPEIGGEEGFERFCAALKAHGLGQLLDIVPNHMG 833 (1693)
T ss_pred CCCHHHHHHHhHHHHHcCCCEEEECCCcCCCCCCCCCCCCCCCCccCcccCCHHHHHHHHHHHHHCCCEEEEEecccccC
Confidence 4589999999999999999999999999964 78999999999999999999999999999999999999999999999
Q ss_pred C
Q 021281 117 G 117 (314)
Q Consensus 117 ~ 117 (314)
.
T Consensus 834 ~ 834 (1693)
T PRK14507 834 V 834 (1693)
T ss_pred C
Confidence 5
No 41
>COG3280 TreY Maltooligosyl trehalose synthase [Carbohydrate transport and metabolism]
Probab=99.82 E-value=1.2e-19 Score=179.04 Aligned_cols=177 Identities=19% Similarity=0.238 Sum_probs=136.5
Q ss_pred hHHHHHHhhhHHHHcCCCEEEeCCCCCCC--CCCCCCcccCCCcCCCCCCHHHHHHHHHHHhhCCCEEEEeeeeccccCC
Q 021281 41 WWRNLERKVPDISKSGFTSVWLPPATHSF--APEGYLPQNLYSLNSSYGSEHLLKALLHKMKQHKVRAMADIVINHRVGT 118 (314)
Q Consensus 41 ~~~gi~~~ldyl~~lG~~~I~l~Pi~~~~--~~~gY~~~d~~~id~~~Gt~~df~~lv~~ah~~Gi~VilD~V~NH~~~~ 118 (314)
+|+...+.||||++|||.++|++||+.+. |.|||+|+|+..|+|.+|+.+.|.+||+++|++||.+|+|+|+|||+..
T Consensus 17 tF~~A~~~l~yl~~LGIShLY~SPIftA~pGStHGYDVvD~t~InPeLGG~egl~rLvaalk~~GlGlI~DIVPNHMav~ 96 (889)
T COG3280 17 TFADARALLDYLADLGISHLYLSPIFTARPGSTHGYDVVDPTEINPELGGEEGLERLVAALKSRGLGLIVDIVPNHMAVG 96 (889)
T ss_pred CHHHHHHhhHHHHhcCchheeccchhhcCCCCCCCccCCCccccChhhcChHHHHHHHHHHHhcCCceEEEecccchhcc
Confidence 79999999999999999999999999876 7899999999999999999999999999999999999999999999987
Q ss_pred -C--C--------CCCCcCcCCCCCCCCCCCCC------cc---------------------------------------
Q 021281 119 -T--Q--------GHGGKYNRYDGIPLSWDEHA------VT--------------------------------------- 142 (314)
Q Consensus 119 -~--~--------~~~~~y~~f~~~~~~~~~~~------~~--------------------------------------- 142 (314)
+ + +..+.|..|-+ .+|++.. ..
T Consensus 97 g~~N~ww~DVLe~G~~S~ya~yFD--I~W~~~~~a~gkillP~LGd~~devl~~G~i~l~~d~~~g~l~l~Y~d~~~Pl~ 174 (889)
T COG3280 97 GHENPWWWDVLENGRDSAYANYFD--IDWEEPDGAQGKILLPFLGDDYDEVLEKGEIKLAYDREAGRLALRYYDLRLPLA 174 (889)
T ss_pred cccChHHHHHHHhCcCccchhhcc--cccCCCCCcCceeeeccccchhhhHHhcCceeeeeccccchhHHhhhhcccCcC
Confidence 2 1 22334443322 3333220 00
Q ss_pred --cCC--CC-----------------------------------------------------------------------
Q 021281 143 --SCT--GG----------------------------------------------------------------------- 147 (314)
Q Consensus 143 --~~~--~~----------------------------------------------------------------------- 147 (314)
.+. -|
T Consensus 175 p~s~~~l~G~l~a~~~~~~~~~~~~~r~~~~~~~~~la~~~~t~~~~a~ld~~~a~~na~~~~l~~L~~~Q~yRLa~Wr~ 254 (889)
T COG3280 175 PGSYAFLLGNLNAILERIAAVPSTRERETQAQFRAALAEILATPNIAACLDECLARFNADPEQLDALHERQHYRLASWRV 254 (889)
T ss_pred CcchhhhcCchhhHHHHHhhcchhHHHHHHHHHHHHHHHhhcCchHHHHHHHHHHhhcccHHHHHHHHHhhhHhhhhhhc
Confidence 000 00
Q ss_pred ---CccccCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCCCCEEEeccCCCC--CHHHHHHHHHhhCC-CeEEEcc
Q 021281 148 ---LGNGSTGDNFHGVPNIDHTQHFVRKDIIAWLRWLRNTVGFQDFRFDFARGY--SAKYVKEYIEGARP-IFSVGEY 219 (314)
Q Consensus 148 ---~~~~~~~~~~~~~~dln~~~p~v~~~l~~~~~~w~~~~gvDGfRlDaa~~i--~~~f~~~~~~~~~~-~~~~gE~ 219 (314)
.-++-..+...++.-+..+.+.|.+.....+..|+++==|||.|+|.+..+ |..+++.+.+.+.| .+++.|-
T Consensus 255 aad~inyRRFF~Vn~L~glRvEd~~VF~~tH~li~~L~~eglidGlRIDHiDGLaDP~gYl~rLR~~~G~~~~I~VEK 332 (889)
T COG3280 255 AADEINYRRFFDVNSLAGLRVEDPAVFEATHRLIFELLREGLIDGLRIDHIDGLADPKGYLRRLRQLVGPDRYIVVEK 332 (889)
T ss_pred cccccCeeeeeeccchheeeeccHHHHHHHHHHHHHHHHhccccceeecccccccCHHHHHHHHHHhcCCCcEEEEeh
Confidence 000001123356666777899999999999999997778999999999987 57899999998874 6777773
No 42
>TIGR01531 glyc_debranch glycogen debranching enzymye. glycogen debranching enzyme possesses two different catalytic activities; oligo-1,4--1,4-glucantransferase (EC 2.4.1.25) and amylo-1,6-glucosidase (EC 3.2.1.33). Site directed mutagenesis studies in S. cerevisiae indicate that the transferase and glucosidase activities are independent and located in different regions of the polypeptide chain. Proteins in this model belong to the larger alpha-amylase family. The model covers eukaryotic proteins with a seed composed of human, nematode and yeast sequences. Yeast seed sequence is well characterized. The model is quite rigorous; either query sequence yields large bit score or it fails to hit the model altogether. There doesn't appear to be any middle ground.
Probab=99.58 E-value=2.9e-15 Score=158.26 Aligned_cols=83 Identities=18% Similarity=0.284 Sum_probs=77.2
Q ss_pred chHHHHHHhhhHHHHcCCCEEEeCCCCCCC-CCCCCCcccCCCcCCCCC----CHHHHHHHHHHHhhC-CCEEEEeeeec
Q 021281 40 DWWRNLERKVPDISKSGFTSVWLPPATHSF-APEGYLPQNLYSLNSSYG----SEHLLKALLHKMKQH-KVRAMADIVIN 113 (314)
Q Consensus 40 g~~~gi~~~ldyl~~lG~~~I~l~Pi~~~~-~~~gY~~~d~~~id~~~G----t~~df~~lv~~ah~~-Gi~VilD~V~N 113 (314)
|.|+..+++|++|+++|+|.|||+||++.. +.|.|++.|+++|||.|| +.+||++||+++|++ ||++|+|+|+|
T Consensus 129 G~~~~w~~~L~~ik~lGyN~IhftPI~~~G~SnS~Ysi~Dyl~idP~~~~~~~~~~d~~~lV~~~h~~~Gm~~ilDvV~N 208 (1464)
T TIGR01531 129 GPLSEWEPRLRVAKEKGYNMIHFTPLQELGGSNSCYSLYDQLQLNQHFKSQKDGKNDVQALVEKLHRDWNVLSITDIVFN 208 (1464)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEeCCCccCCCCCCCccccchhhcChhhcccCCcHHHHHHHHHHHHHhcCCEEEEEeeec
Confidence 578999999999999999999999999555 789999999999999995 899999999999997 99999999999
Q ss_pred cccCCCCCC
Q 021281 114 HRVGTTQGH 122 (314)
Q Consensus 114 H~~~~~~~~ 122 (314)
|||.+++|.
T Consensus 209 HTa~ds~Wl 217 (1464)
T TIGR01531 209 HTANNSPWL 217 (1464)
T ss_pred ccccCCHHH
Confidence 999999643
No 43
>PF14872 GHL5: Hypothetical glycoside hydrolase 5
Probab=99.19 E-value=1.1e-09 Score=107.77 Aligned_cols=153 Identities=15% Similarity=0.182 Sum_probs=108.5
Q ss_pred ccccCCceeEEEEeeCCCCCCchHHHHHHhhhHHHH---------------cCCCEEEeCCCCCCC--------------
Q 021281 19 AVIRNGREILFQGFNWESCKHDWWRNLERKVPDISK---------------SGFTSVWLPPATHSF-------------- 69 (314)
Q Consensus 19 ~~~~~~~~~i~q~F~w~~~~~g~~~gi~~~ldyl~~---------------lG~~~I~l~Pi~~~~-------------- 69 (314)
++.-+.-.-|||+..-+-..+|+++|+++....|++ .|+++|+|+||=+..
T Consensus 172 ~~rv~~P~nILQiHv~TAsp~GtlaGLT~iyqria~K~~~g~pLtp~E~ny~GYDAvQLLPiEPtieyr~e~~~~h~Ff~ 251 (811)
T PF14872_consen 172 IPRVPAPRNILQIHVGTASPEGTLAGLTRIYQRIADKLAAGEPLTPAEENYVGYDAVQLLPIEPTIEYRAENEPGHEFFS 251 (811)
T ss_pred CcccCCCceeEEEecCCCCCCcchHHHHHHHHHHHHHHhcCCCCChhHHhcccccceeeeccCCcceeccccCCCCceee
Confidence 333333456999999999999999999998888863 699999999985433
Q ss_pred -------------------------------CCCCCCcc--cCCCcCCC-CC--CHHHHHHHHHHHhh---CCCEEEEee
Q 021281 70 -------------------------------APEGYLPQ--NLYSLNSS-YG--SEHLLKALLHKMKQ---HKVRAMADI 110 (314)
Q Consensus 70 -------------------------------~~~gY~~~--d~~~id~~-~G--t~~df~~lv~~ah~---~Gi~VilD~ 110 (314)
..+||++. -.-+.+|. ++ -++++-.||..+|. ..|+||+|+
T Consensus 252 ~~~~d~~~~~~~~~~~~~~~~v~v~L~kPdtqNWGYDv~I~GsaAtNPalL~TlRPDElVdfiatLHnFp~gPIqvIyDl 331 (811)
T PF14872_consen 252 IRPEDEDELDPETEGVHEDGDVTVTLRKPDTQNWGYDVVILGSAATNPALLETLRPDELVDFIATLHNFPTGPIQVIYDL 331 (811)
T ss_pred ecccccccccccccccccCceEEEEecCCCccccCcceeeeccCCCCHHHHhcCCcHHHHHHHHHHhcCCCCCeEEEEee
Confidence 12445432 11222322 12 36899999999998 589999999
Q ss_pred eeccccCCCCC-CCCcCcCCCCCCCCCCCCCcccCCCCCccccCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCCCCE
Q 021281 111 VINHRVGTTQG-HGGKYNRYDGIPLSWDEHAVTSCTGGLGNGSTGDNFHGVPNIDHTQHFVRKDIIAWLRWLRNTVGFQD 189 (314)
Q Consensus 111 V~NH~~~~~~~-~~~~y~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~~p~v~~~l~~~~~~w~~~~gvDG 189 (314)
|+.|.-..+.. -++.| +.+ +|=+ .-|||+.+|.||..+++.=+.=+ .+|+||
T Consensus 332 VyGHADNQ~~~LLn~~f--lkG-------------PnMY-----------GQdlnhq~P~VRAILLEmQRRK~-n~GaDG 384 (811)
T PF14872_consen 332 VYGHADNQALDLLNRRF--LKG-------------PNMY-----------GQDLNHQNPVVRAILLEMQRRKI-NTGADG 384 (811)
T ss_pred ecccccchhhHhhhhhh--ccC-------------Cccc-----------cccccccChHHHHHHHHHHHhhc-ccCCce
Confidence 99997764321 01111 111 1111 23689999999999999988888 999999
Q ss_pred EEeccCCCC
Q 021281 190 FRFDFARGY 198 (314)
Q Consensus 190 fRlDaa~~i 198 (314)
+|+|.+..+
T Consensus 385 IRVDGgQDF 393 (811)
T PF14872_consen 385 IRVDGGQDF 393 (811)
T ss_pred eEecccccc
Confidence 999999653
No 44
>PF14701 hDGE_amylase: glucanotransferase domain of human glycogen debranching enzyme
Probab=98.97 E-value=1.3e-09 Score=104.51 Aligned_cols=84 Identities=14% Similarity=0.248 Sum_probs=74.5
Q ss_pred chHHHHHHhhhHHHHcCCCEEEeCCCCCCC-CCCCCCcccCCCcCCCCCC------HHHHHHHHHHHh-hCCCEEEEeee
Q 021281 40 DWWRNLERKVPDISKSGFTSVWLPPATHSF-APEGYLPQNLYSLNSSYGS------EHLLKALLHKMK-QHKVRAMADIV 111 (314)
Q Consensus 40 g~~~gi~~~ldyl~~lG~~~I~l~Pi~~~~-~~~gY~~~d~~~id~~~Gt------~~df~~lv~~ah-~~Gi~VilD~V 111 (314)
|.+..-.++|..++++|+|.|+++|+++.+ |.+-|.+.|..+++|.+.. .++++++|++++ +.||..|.|+|
T Consensus 19 G~~~~W~~~l~~~~~~GYNmIHftPlq~~G~S~S~YSI~Dql~~~~~~~~~~~~~~~~~v~~~v~~~~~~~~ll~~~DvV 98 (423)
T PF14701_consen 19 GPFSDWEKHLKVISEKGYNMIHFTPLQERGESNSPYSIYDQLKFDPDFFPPGKESTFEDVKEFVKEAEKKYGLLSMTDVV 98 (423)
T ss_pred CCHhHHHHHHHHHHHcCCcEEEecccccCCCCCCCccccchhhcChhhcCCCccccHHHHHHHHHHHHHHcCceEEEEEe
Confidence 457778899999999999999999999887 5788999999999998765 369999999995 68999999999
Q ss_pred eccccCCCCCCC
Q 021281 112 INHRVGTTQGHG 123 (314)
Q Consensus 112 ~NH~~~~~~~~~ 123 (314)
+||++.+++|..
T Consensus 99 ~NHtA~nS~Wl~ 110 (423)
T PF14701_consen 99 LNHTANNSPWLR 110 (423)
T ss_pred eccCcCCChHHH
Confidence 999999998643
No 45
>PF02638 DUF187: Glycosyl hydrolase like GH101; InterPro: IPR003790 This entry describes proteins of unknown function.
Probab=98.83 E-value=2.9e-08 Score=92.97 Aligned_cols=141 Identities=11% Similarity=0.086 Sum_probs=83.9
Q ss_pred hHHHHHHhhhHHHHcCCCEEEeCCCCCCC--CCCCCCcccCCCcCCCCC--CHHHHHHHHHHHhhCCCEEEEeeeecccc
Q 021281 41 WWRNLERKVPDISKSGFTSVWLPPATHSF--APEGYLPQNLYSLNSSYG--SEHLLKALLHKMKQHKVRAMADIVINHRV 116 (314)
Q Consensus 41 ~~~gi~~~ldyl~~lG~~~I~l~Pi~~~~--~~~gY~~~d~~~id~~~G--t~~df~~lv~~ah~~Gi~VilD~V~NH~~ 116 (314)
+-+.+.+.|+.|+++|||+|++-=-.... ..+-+.|...+......+ +-+-|+.+|++||++||+|..=+.+...+
T Consensus 17 ~~~~~~~~l~~l~~~~~N~V~~qVr~~gda~Y~S~~~p~s~~~~g~~~~~pg~DpL~~~I~eaHkrGlevHAW~~~~~~~ 96 (311)
T PF02638_consen 17 SKEQIDEMLDDLKSAGFNAVFVQVRPRGDALYPSDIEPWSGYLTGKQGKDPGFDPLEFMIEEAHKRGLEVHAWFRVGFNA 96 (311)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEEEEeCcEEEecccccccccccCCCCCCCCCccHHHHHHHHHHHcCCEEEEEEEeecCC
Confidence 35789999999999999999862211111 112233322121111121 25679999999999999999988655443
Q ss_pred CCCCC-CCCcCcCCCCCCCCCCCCCcccCCCCCccccCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCCCCEEEecc
Q 021281 117 GTTQG-HGGKYNRYDGIPLSWDEHAVTSCTGGLGNGSTGDNFHGVPNIDHTQHFVRKDIIAWLRWLRNTVGFQDFRFDF 194 (314)
Q Consensus 117 ~~~~~-~~~~y~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~~p~v~~~l~~~~~~w~~~~gvDGfRlDa 194 (314)
..... ......++.. -++.....+.++ ..+..-||..+|+||+++++.++..++.|.|||+-+|-
T Consensus 97 ~~~~~~~~~~p~~~~~----~~~~~~~~~~~~---------~~~~~~lnP~~PeVr~~i~~~v~Eiv~~YdvDGIhlDd 162 (311)
T PF02638_consen 97 PDVSHILKKHPEWFAV----NHPGWVRTYEDA---------NGGYYWLNPGHPEVRDYIIDIVKEIVKNYDVDGIHLDD 162 (311)
T ss_pred CchhhhhhcCchhhee----cCCCceeecccC---------CCCceEECCCCHHHHHHHHHHHHHHHhcCCCCeEEecc
Confidence 31110 0000000000 001111111000 12233489999999999999999999999999999994
No 46
>PF02324 Glyco_hydro_70: Glycosyl hydrolase family 70; InterPro: IPR003318 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glucosyltransferases or sucrose 6-glycosyl transferases (GTF-S) (2.4.1.5 from EC, GH70 from CAZY) catalyse the transfer of D-glucopyramnosyl units from sucrose onto acceptor molecules []. This signature roughly corresponds to the N-terminal catalytic domain of the enzyme. Members of this group also contain the putative cell wall binding repeat (IPR002479 from INTERPRO).; GO: 0009250 glucan biosynthetic process; PDB: 3AIE_G 3AIB_D 3AIC_E 3TTQ_A 3TTO_D 3KLL_A 3KLK_A 3HZ3_A.
Probab=98.78 E-value=1.7e-08 Score=100.23 Aligned_cols=93 Identities=19% Similarity=0.319 Sum_probs=64.0
Q ss_pred ceeEEEEeeC--CCCCC--c-hHHHHHHhhhHHHHcCCCEEEeCCCCCCCC---------CCCCCcccCCCcC----CCC
Q 021281 25 REILFQGFNW--ESCKH--D-WWRNLERKVPDISKSGFTSVWLPPATHSFA---------PEGYLPQNLYSLN----SSY 86 (314)
Q Consensus 25 ~~~i~q~F~w--~~~~~--g-~~~gi~~~ldyl~~lG~~~I~l~Pi~~~~~---------~~gY~~~d~~~id----~~~ 86 (314)
+.|||++|.= +++.. . +...|.+..+-++++|||..|+.|-+.+.. -.||+-+|-|.|. .+|
T Consensus 564 SqvIYEgFSNFQ~~~t~~~eytN~~IA~Na~lFk~wGITsFemAPQY~Ss~D~tFLDSiiqNGYAFtDRYDLg~s~ptKY 643 (809)
T PF02324_consen 564 SQVIYEGFSNFQDFPTTPSEYTNVVIAKNADLFKSWGITSFEMAPQYRSSTDGTFLDSIIQNGYAFTDRYDLGMSKPTKY 643 (809)
T ss_dssp T-EEEE---TTB---SSGGGSHHHHHHHTHHHHHHTTEEEEE----S-B--SSSSHHHHTT-SSSBS-TT-SSSSS-BTT
T ss_pred cchhhccccccccCCCChHHHHHHHHHHhHHHHHhcCcceeeeCcceecCCCCcchhhHhhcCccccchhhhcCCCCCCC
Confidence 4689999983 22322 2 889999999999999999999999987651 4799999999986 899
Q ss_pred CCHHHHHHHHHHHhhCCCEEEEeeeeccccC
Q 021281 87 GSEHLLKALLHKMKQHKVRAMADIVINHRVG 117 (314)
Q Consensus 87 Gt~~df~~lv~~ah~~Gi~VilD~V~NH~~~ 117 (314)
||.+||+..|+++|+.||+||.|+|++.+-.
T Consensus 644 Gs~~dL~~AikALH~~GiqviaDwVpdQiYn 674 (809)
T PF02324_consen 644 GSVEDLRNAIKALHAAGIQVIADWVPDQIYN 674 (809)
T ss_dssp B-HHHHHHHHHHHHHTT-EEEEEE-TSEE--
T ss_pred CCHHHHHHHHHHHHHcCcchhhhhchHhhhC
Confidence 9999999999999999999999999998754
No 47
>PF14871 GHL6: Hypothetical glycosyl hydrolase 6
Probab=98.58 E-value=7e-07 Score=73.18 Aligned_cols=126 Identities=13% Similarity=0.152 Sum_probs=78.0
Q ss_pred HHhhhHHHHcCCCEEEeCCCCCCCCCCCCCcccCCCcCCCCCCHHHHHHHHHHHhhCCCEEEEeeeec--c-ccCCCCCC
Q 021281 46 ERKVPDISKSGFTSVWLPPATHSFAPEGYLPQNLYSLNSSYGSEHLLKALLHKMKQHKVRAMADIVIN--H-RVGTTQGH 122 (314)
Q Consensus 46 ~~~ldyl~~lG~~~I~l~Pi~~~~~~~gY~~~d~~~id~~~Gt~~df~~lv~~ah~~Gi~VilD~V~N--H-~~~~~~~~ 122 (314)
++-+++|+++|+++|.+.-=. ....-|-|+..-...|.++ .+-|+++|++||++||+|++=+-++ . +...||
T Consensus 3 ~~~~~~lk~~~v~si~i~a~~--h~g~ayYPt~~~~~hp~L~-~Dllge~v~a~h~~Girv~ay~~~~~d~~~~~~HP-- 77 (132)
T PF14871_consen 3 EQFVDTLKEAHVNSITIFAKC--HGGYAYYPTKVGPRHPGLK-RDLLGEQVEACHERGIRVPAYFDFSWDEDAAERHP-- 77 (132)
T ss_pred HHHHHHHHHhCCCEEEEEccc--ccEEEEccCCCCcCCCCCC-cCHHHHHHHHHHHCCCEEEEEEeeecChHHHHhCC--
Confidence 567899999999999985311 1112244555556678887 7889999999999999999866555 1 111222
Q ss_pred CCcCcCCCCCCCCCCCCCcccCCCCCccccCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCCCCEEEec
Q 021281 123 GGKYNRYDGIPLSWDEHAVTSCTGGLGNGSTGDNFHGVPNIDHTQHFVRKDIIAWLRWLRNTVGFQDFRFD 193 (314)
Q Consensus 123 ~~~y~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~~p~v~~~l~~~~~~w~~~~gvDGfRlD 193 (314)
+|. ....+|...........+...+..++|. ++++++.++..++.|.+||+=+|
T Consensus 78 ------------eW~----~~~~~G~~~~~~~~~~~~~~~~c~ns~Y-~e~~~~~i~Ei~~~y~~DGiF~D 131 (132)
T PF14871_consen 78 ------------EWF----VRDADGRPMRGERFGYPGWYTCCLNSPY-REFLLEQIREILDRYDVDGIFFD 131 (132)
T ss_pred ------------cee----eECCCCCCcCCCCcCCCCceecCCCccH-HHHHHHHHHHHHHcCCCCEEEec
Confidence 221 1111111000000011122334444554 49999999999988999999887
No 48
>COG1649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.27 E-value=4.7e-06 Score=80.13 Aligned_cols=141 Identities=13% Similarity=0.060 Sum_probs=85.1
Q ss_pred hHHHHHHhhhHHHHcCCCEEEeCCCCCCCC----CCCCCcccCCC--cCCCCCCHHHHHHHHHHHhhCCCEEEEeeeecc
Q 021281 41 WWRNLERKVPDISKSGFTSVWLPPATHSFA----PEGYLPQNLYS--LNSSYGSEHLLKALLHKMKQHKVRAMADIVINH 114 (314)
Q Consensus 41 ~~~gi~~~ldyl~~lG~~~I~l~Pi~~~~~----~~gY~~~d~~~--id~~~Gt~~df~~lv~~ah~~Gi~VilD~V~NH 114 (314)
+=..+.+.|+.|+.||||+|+.. ....+ .+...+..-.. +-..-++-+=|+.+|++||+|||+|+.=+-+--
T Consensus 62 ~~~el~~~ld~l~~ln~NTv~~q--V~~~G~~lypS~~~p~s~~~~~~~~~~~g~DpLa~~I~~AHkr~l~v~aWf~~~~ 139 (418)
T COG1649 62 QRQELKDILDDLQKLNFNTVYPQ--VWNDGDALYPSAVLPWSDGLPGVLGVDPGYDPLAFVIAEAHKRGLEVHAWFNPYR 139 (418)
T ss_pred cHHHHHHHHHHHHHcCCceeEEE--EecCccccccccccccccCcCcccCCCCCCChHHHHHHHHHhcCCeeeechhhcc
Confidence 45788999999999999999842 22221 11222221110 001122346699999999999999999877777
Q ss_pred ccCCCCCCCCcCcCCCCCCCCCCCCCcccCCCCCccccCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCCCCEEEecc
Q 021281 115 RVGTTQGHGGKYNRYDGIPLSWDEHAVTSCTGGLGNGSTGDNFHGVPNIDHTQHFVRKDIIAWLRWLRNTVGFQDFRFDF 194 (314)
Q Consensus 115 ~~~~~~~~~~~y~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~~p~v~~~l~~~~~~w~~~~gvDGfRlDa 194 (314)
++..... +... ...|. ....+++-. ..+..+-...=||-.+|+||++|.+.+...++.|.|||+.+|-
T Consensus 140 ~a~~~s~----~~~~---~p~~~----~~~~~~~~~-~~~~~~~~~~~ldPg~Pevq~~i~~lv~evV~~YdvDGIQfDd 207 (418)
T COG1649 140 MAPPTSP----LTKR---HPHWL----TTKRPGWVY-VRHQGWGKRVWLDPGIPEVQDFITSLVVEVVRNYDVDGIQFDD 207 (418)
T ss_pred cCCCCCh----hHhh---CCCCc----ccCCCCeEE-EecCCceeeeEeCCCChHHHHHHHHHHHHHHhCCCCCceecce
Confidence 6663221 1000 01111 111111110 0000010234478889999999999999999999999999997
Q ss_pred C
Q 021281 195 A 195 (314)
Q Consensus 195 a 195 (314)
-
T Consensus 208 ~ 208 (418)
T COG1649 208 Y 208 (418)
T ss_pred e
Confidence 5
No 49
>PF02324 Glyco_hydro_70: Glycosyl hydrolase family 70; InterPro: IPR003318 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glucosyltransferases or sucrose 6-glycosyl transferases (GTF-S) (2.4.1.5 from EC, GH70 from CAZY) catalyse the transfer of D-glucopyramnosyl units from sucrose onto acceptor molecules []. This signature roughly corresponds to the N-terminal catalytic domain of the enzyme. Members of this group also contain the putative cell wall binding repeat (IPR002479 from INTERPRO).; GO: 0009250 glucan biosynthetic process; PDB: 3AIE_G 3AIB_D 3AIC_E 3TTQ_A 3TTO_D 3KLL_A 3KLK_A 3HZ3_A.
Probab=97.98 E-value=1.8e-05 Score=79.21 Aligned_cols=130 Identities=18% Similarity=0.258 Sum_probs=84.0
Q ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHHHHH---------hCCCCEEEeccCCCCCHHHHHHHHHhh-------------C
Q 021281 154 GDNFHGVPNIDHTQHFVRKDIIAWLRWLRN---------TVGFQDFRFDFARGYSAKYVKEYIEGA-------------R 211 (314)
Q Consensus 154 ~~~~~~~~dln~~~p~v~~~l~~~~~~w~~---------~~gvDGfRlDaa~~i~~~f~~~~~~~~-------------~ 211 (314)
|..+.--.|++-+||.||.+.+.|+.+++. +..+||+|+|||.+|..+.++-..+-. .
T Consensus 137 GyEfLLaNDVDNSNPvVQAEqLNwl~yLmN~GsI~~~d~daNFDgiRVDAvDNVdADlLqia~dyfkaaYgv~~~~a~An 216 (809)
T PF02324_consen 137 GYEFLLANDVDNSNPVVQAEQLNWLHYLMNFGSITANDPDANFDGIRVDAVDNVDADLLQIAGDYFKAAYGVDKNDANAN 216 (809)
T ss_dssp S-S--SSEEE-TTSHHHHHHHHHHHHHHHTHHHHHHS-TTSS--EEEETTGGGS-THHHHHHHHHHHHHH-TTTBHHHHC
T ss_pred cceeEEeccccCCCchhhHHHHHHHHHHhhccccccCCCCCCcccEEeecccccCHHHHHHHHHHHHHHhCCCcChhhHh
Confidence 345555678899999999999999999997 789999999999999998877543321 1
Q ss_pred CCeEEEcccCCCCCCCCCCCCccchhHHHHhhhhccCCCcceeeChhhHHHHHHHHcc---chhHHHhhhCCCCCCcc--
Q 021281 212 PIFSVGEYWDSCNYNSHGLDYNQDSHRQRIINWIDGTGQLSAAFDFTTKGILQEAVKG---QFWRLRDAQGKPPGVMG-- 286 (314)
Q Consensus 212 ~~~~~gE~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~df~l~~~l~~~~~g---~~~~l~~~~~~~~~~~~-- 286 (314)
..+.+-|.|... =..|+...+.....+|++++..|..++.. ..+.|...+.. .+.-
T Consensus 217 ~HlSilE~ws~n-----------------d~~y~~~~g~~qL~mD~~~~~~l~~sL~~~~~~R~~l~~li~~--slvnR~ 277 (809)
T PF02324_consen 217 KHLSILEAWSSN-----------------DPDYVKDTGNPQLTMDNGLRLALLYSLTRPSNNRSGLEPLITN--SLVNRS 277 (809)
T ss_dssp TC--EESSSTTT-----------------HHHHHHHTTSSSBEEEHHHHHHHHHHTSS-TTC---CTHHHHS--SSSECS
T ss_pred hhheeeeccccC-----------------ChHHHhcCCCceeeecHHHHHHHHHHhcCCccccccHHHHhhh--hhcccc
Confidence 357799999862 14667777777889999999999999832 23334333321 1221
Q ss_pred -----ccCCceeeccCCCCCC
Q 021281 287 -----WWPSRAVTFLDNHDTG 302 (314)
Q Consensus 287 -----~~p~~~v~F~~NHD~~ 302 (314)
..+...-.||.+||.+
T Consensus 278 ~d~~en~a~pNYsFvrAHDse 298 (809)
T PF02324_consen 278 NDSTENEAQPNYSFVRAHDSE 298 (809)
T ss_dssp EE--SSESS-EEEES-BSSTT
T ss_pred cCCcCCcccCceeeeecccHH
Confidence 1122345799999986
No 50
>KOG3625 consensus Alpha amylase [Carbohydrate transport and metabolism]
Probab=97.79 E-value=2.1e-05 Score=80.59 Aligned_cols=80 Identities=20% Similarity=0.316 Sum_probs=70.5
Q ss_pred HHHHHHhhhHHHHcCCCEEEeCCCCCCC-CCCCCCcccCCCcCCCCC------CHHHHHHHHHHHhhC-CCEEEEeeeec
Q 021281 42 WRNLERKVPDISKSGFTSVWLPPATHSF-APEGYLPQNLYSLNSSYG------SEHLLKALLHKMKQH-KVRAMADIVIN 113 (314)
Q Consensus 42 ~~gi~~~ldyl~~lG~~~I~l~Pi~~~~-~~~gY~~~d~~~id~~~G------t~~df~~lv~~ah~~-Gi~VilD~V~N 113 (314)
+..-+.+|.-+++.|+|-|.++|+++-+ +.+-|...|...+++.+- +.||.++||+.||+- +|--|-|+|+|
T Consensus 141 l~eWeprL~va~e~gYNmIHfTPlqelG~S~S~YSl~dql~~~~~~~~~~~k~s~eDV~~lV~~l~rewnvlsi~DvV~N 220 (1521)
T KOG3625|consen 141 LDEWEPRLRVAKESGYNMIHFTPLQELGLSRSCYSLADQLELNPDFSRPNRKYSFEDVGQLVEKLKREWNVLSITDVVYN 220 (1521)
T ss_pred hhhhhHHHHHHHHcCCceEeeeeHHHhccCCCccchHhhhhcChhhhccCCCCCHHHHHHHHHHHHhhcCeeeeehhhhh
Confidence 4555678888999999999999999887 667899999889998876 789999999999986 99999999999
Q ss_pred cccCCCCC
Q 021281 114 HRVGTTQG 121 (314)
Q Consensus 114 H~~~~~~~ 121 (314)
|++..++|
T Consensus 221 HtAnns~W 228 (1521)
T KOG3625|consen 221 HTANNSKW 228 (1521)
T ss_pred ccccCCch
Confidence 99998853
No 51
>cd06592 GH31_glucosidase_KIAA1161 KIAA1161 is an uncharacterized Homo sapiens protein with a glycosyl hydrolase family 31 (GH31) domain that is homologous to the Escherichia coli YihQ glucosidase. Orthologs of KIA1161 are found in eukaryotes and prokaryotes. In bacteria, YihQ (along with YihO) is important for bacterial O-antigen capsule assembly and translocation. Enzymes of the GH31 family possess a wide range of different hydrolytic activities including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=97.70 E-value=0.00033 Score=65.49 Aligned_cols=135 Identities=11% Similarity=0.131 Sum_probs=84.7
Q ss_pred hHHHHHHhhhHHHHcC--CCEEEeCCCCCCCCCCCCCcccCCCcCC-CCCCHHHHHHHHHHHhhCCCEEEEeeeeccccC
Q 021281 41 WWRNLERKVPDISKSG--FTSVWLPPATHSFAPEGYLPQNLYSLNS-SYGSEHLLKALLHKMKQHKVRAMADIVINHRVG 117 (314)
Q Consensus 41 ~~~gi~~~ldyl~~lG--~~~I~l~Pi~~~~~~~gY~~~d~~~id~-~~Gt~~df~~lv~~ah~~Gi~VilD~V~NH~~~ 117 (314)
+-+.|.+.++.+++.| ++.|+|-.=+.. ++ .| +..|+ +|- +.++||+++|++|+|+++=+-+ +++.
T Consensus 28 s~~~v~~~~~~~~~~~iP~d~i~iD~~w~~----~~--g~-f~~d~~~FP---dp~~mi~~l~~~G~k~~l~i~P-~i~~ 96 (303)
T cd06592 28 NQETVLNYAQEIIDNGFPNGQIEIDDNWET----CY--GD-FDFDPTKFP---DPKGMIDQLHDLGFRVTLWVHP-FINT 96 (303)
T ss_pred CHHHHHHHHHHHHHcCCCCCeEEeCCCccc----cC--Cc-cccChhhCC---CHHHHHHHHHHCCCeEEEEECC-eeCC
Confidence 6788999999999998 567776532211 11 12 34553 554 4789999999999999998776 4554
Q ss_pred CCCCCCCcCcCCCCCCCCCCCCCcccCCCCCccccCCCCC-CCCCCCCCCCHHHHHHHHHHHHHHHHhCCCCEEEeccCC
Q 021281 118 TTQGHGGKYNRYDGIPLSWDEHAVTSCTGGLGNGSTGDNF-HGVPNIDHTQHFVRKDIIAWLRWLRNTVGFQDFRFDFAR 196 (314)
Q Consensus 118 ~~~~~~~~y~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~dln~~~p~v~~~l~~~~~~w~~~~gvDGfRlDaa~ 196 (314)
+++. |..... ........++. ....+..+ ....-+|+.||++|+.+.+.++.++.+.|||||-+|...
T Consensus 97 ~s~~----~~e~~~------~g~~vk~~~g~-~~~~~~~w~g~~~~~Dftnp~a~~w~~~~~~~~~~~~Gvdg~w~D~~E 165 (303)
T cd06592 97 DSEN----FREAVE------KGYLVSEPSGD-IPALTRWWNGTAAVLDFTNPEAVDWFLSRLKSLQEKYGIDSFKFDAGE 165 (303)
T ss_pred CCHH----HHhhhh------CCeEEECCCCC-CCcccceecCCcceEeCCCHHHHHHHHHHHHHHHHHhCCcEEEeCCCC
Confidence 3321 100000 00011111110 00111111 113458999999999999999999989999999999976
Q ss_pred C
Q 021281 197 G 197 (314)
Q Consensus 197 ~ 197 (314)
.
T Consensus 166 ~ 166 (303)
T cd06592 166 A 166 (303)
T ss_pred c
Confidence 3
No 52
>cd06593 GH31_xylosidase_YicI YicI alpha-xylosidase is a glycosyl hydrolase family 31 (GH31) enzyme that catalyzes the release of an alpha-xylosyl residue from the non-reducing end of alpha-xyloside substrates such as alpha-xylosyl fluoride and isoprimeverose. YicI forms a homohexamer (a trimer of dimers). All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. The YicI family corresponds to subgroup 4 in the Ernst et al classification of GH31 enzymes.
Probab=97.67 E-value=0.00039 Score=65.03 Aligned_cols=138 Identities=12% Similarity=0.056 Sum_probs=87.5
Q ss_pred hHHHHHHhhhHHHHcC--CCEEEeCCCCCCCCCCCCCcccCCCcC-CCCCCHHHHHHHHHHHhhCCCEEEEeeeeccccC
Q 021281 41 WWRNLERKVPDISKSG--FTSVWLPPATHSFAPEGYLPQNLYSLN-SSYGSEHLLKALLHKMKQHKVRAMADIVINHRVG 117 (314)
Q Consensus 41 ~~~gi~~~ldyl~~lG--~~~I~l~Pi~~~~~~~gY~~~d~~~id-~~~Gt~~df~~lv~~ah~~Gi~VilD~V~NH~~~ 117 (314)
+-+.+.+.++.+++.| ++.|||-.=+.. +|...| +..| .+|- +.+.||+++|++|++|++-+.+ +++.
T Consensus 22 ~~~~v~~~~~~~~~~~iP~d~~~lD~~w~~----~~~~~~-f~~d~~~FP---d~~~~i~~l~~~G~~~~~~~~P-~i~~ 92 (308)
T cd06593 22 DEEEVNEFADGMRERNLPCDVIHLDCFWMK----EFQWCD-FEFDPDRFP---DPEGMLSRLKEKGFKVCLWINP-YIAQ 92 (308)
T ss_pred CHHHHHHHHHHHHHcCCCeeEEEEeccccc----CCccee-eEECcccCC---CHHHHHHHHHHCCCeEEEEecC-CCCC
Confidence 5678889999999999 777887654332 222223 4555 3664 4689999999999999998875 5665
Q ss_pred CCCCCCCcCcCCCCCCCCCCCCCcccCCCCCccccCCCCC-CCCCCCCCCCHHHHHHHHHHHHHHHHhCCCCEEEeccCC
Q 021281 118 TTQGHGGKYNRYDGIPLSWDEHAVTSCTGGLGNGSTGDNF-HGVPNIDHTQHFVRKDIIAWLRWLRNTVGFQDFRFDFAR 196 (314)
Q Consensus 118 ~~~~~~~~y~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~dln~~~p~v~~~l~~~~~~w~~~~gvDGfRlDaa~ 196 (314)
+++. |..... .. .+....++.. ..+..+ ....-+|+.||++++...+.++.++ +.|||||-+|...
T Consensus 93 ~~~~----~~e~~~--~g----~~v~~~~g~~--~~~~~w~g~~~~~Dftnp~a~~w~~~~~~~~~-~~Gid~~~~D~~e 159 (308)
T cd06593 93 KSPL----FKEAAE--KG----YLVKKPDGSV--WQWDLWQPGMGIIDFTNPDACKWYKDKLKPLL-DMGVDCFKTDFGE 159 (308)
T ss_pred Cchh----HHHHHH--CC----eEEECCCCCe--eeecccCCCcccccCCCHHHHHHHHHHHHHHH-HhCCcEEecCCCC
Confidence 4431 110000 00 0011111110 000111 1223479999999999999999888 7999999999887
Q ss_pred CCCH
Q 021281 197 GYSA 200 (314)
Q Consensus 197 ~i~~ 200 (314)
.+|.
T Consensus 160 ~~p~ 163 (308)
T cd06593 160 RIPT 163 (308)
T ss_pred CCCc
Confidence 6554
No 53
>PF02065 Melibiase: Melibiase; InterPro: IPR000111 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycosyl hydrolase family 27, family 31 and family 36 alpha-galactosidases form the glycosyl hydrolase clan GH-D (acc_GH from CAZY), a superfamily of alpha-galactosidases, alpha-N-acetylgalactosaminidases, and isomaltodextranases which are likely to share a common catalytic mechanism and structural topology. Alpha-galactosidase (3.2.1.22 from EC) (melibiase) [] catalyzes the hydrolysis of melibiose into galactose and glucose. In man, the deficiency of this enzyme is the cause of Fabry's disease (X-linked sphingolipidosis). Alpha-galactosidase is present in a variety of organisms. There is a considerable degree of similarity in the sequence of alpha-galactosidase from various eukaryotic species. Escherichia coli alpha-galactosidase (gene melA), which requires NAD and magnesium as cofactors, is not structurally related to the eukaryotic enzymes; by contrast, an Escherichia coli plasmid encoded alpha-galactosidase (gene rafA P16551 from SWISSPROT) [] contains a region of about 50 amino acids which is similar to a domain of the eukaryotic alpha-galactosidases. Alpha-N-acetylgalactosaminidase (3.2.1.49 from EC) [] catalyzes the hydrolysis of terminal non-reducing N-acetyl-D-galactosamine residues in N-acetyl-alpha-D- galactosaminides. In man, the deficiency of this enzyme is the cause of Schindler and Kanzaki diseases. The sequence of this enzyme is highly related to that of the eukaryotic alpha-galactosidases.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1KTC_A 1KTB_A 1UAS_A 3H55_A 3H53_A 3IGU_B 3H54_A 3LRM_A 3LRL_A 3LRK_A ....
Probab=97.56 E-value=0.0015 Score=63.17 Aligned_cols=138 Identities=10% Similarity=0.015 Sum_probs=83.1
Q ss_pred hHHHHHHhhhHHHHcCCCEEEeCC-CCCCCCCCCCCcccCCCcC-CCCCCHHHHHHHHHHHhhCCCEEEEeeeeccccCC
Q 021281 41 WWRNLERKVPDISKSGFTSVWLPP-ATHSFAPEGYLPQNLYSLN-SSYGSEHLLKALLHKMKQHKVRAMADIVINHRVGT 118 (314)
Q Consensus 41 ~~~gi~~~ldyl~~lG~~~I~l~P-i~~~~~~~gY~~~d~~~id-~~~Gt~~df~~lv~~ah~~Gi~VilD~V~NH~~~~ 118 (314)
+-+.|.+.++.++++|++.+.|== .+......--..-| ..++ .+|- ..++.|++.+|++||+.-|=+.+--++.+
T Consensus 56 ~e~~i~~~a~~~~~~G~e~fviDDGW~~~r~~d~~~~Gd-W~~~~~kFP--~Gl~~l~~~i~~~Gmk~GlW~ePe~v~~~ 132 (394)
T PF02065_consen 56 TEEKILELADAAAELGYEYFVIDDGWFGGRDDDNAGLGD-WEPDPKKFP--NGLKPLADYIHSLGMKFGLWFEPEMVSPD 132 (394)
T ss_dssp -HHHHHHHHHHHHHHT-SEEEE-SSSBCTESTTTSTTSB-ECBBTTTST--THHHHHHHHHHHTT-EEEEEEETTEEESS
T ss_pred CHHHHHHHHHHHHHhCCEEEEEcCccccccCCCcccCCc-eeEChhhhC--CcHHHHHHHHHHCCCeEEEEeccccccch
Confidence 678888999999999999987621 12111111001122 2344 3553 45999999999999999999988877776
Q ss_pred CCCCCCcCcCCCCCCCCCCCCCcccCCCCCccccCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCCCCEEEeccCCCC
Q 021281 119 TQGHGGKYNRYDGIPLSWDEHAVTSCTGGLGNGSTGDNFHGVPNIDHTQHFVRKDIIAWLRWLRNTVGFQDFRFDFARGY 198 (314)
Q Consensus 119 ~~~~~~~y~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~~p~v~~~l~~~~~~w~~~~gvDGfRlDaa~~i 198 (314)
+.-.... .+|- ....+..... ....--||+.+|+|++++.+.+..++++.|||.|.+|.-..+
T Consensus 133 S~l~~~h--------Pdw~----l~~~~~~~~~-----~r~~~vLD~~~pev~~~l~~~i~~ll~~~gidYiK~D~n~~~ 195 (394)
T PF02065_consen 133 SDLYREH--------PDWV----LRDPGRPPTL-----GRNQYVLDLSNPEVRDYLFEVIDRLLREWGIDYIKWDFNRDI 195 (394)
T ss_dssp SCHCCSS--------BGGB----TCCTTSE-EC-----BTTBEEB-TTSHHHHHHHHHHHHHHHHHTT-SEEEEE-TS-T
T ss_pred hHHHHhC--------ccce----eecCCCCCcC-----cccceEEcCCCHHHHHHHHHHHHHHHHhcCCCEEEeccccCC
Confidence 5521111 1121 1111100000 011223899999999999999999999999999999997544
No 54
>cd06597 GH31_transferase_CtsY CtsY (cyclic tetrasaccharide-synthesizing enzyme Y) is a bacterial 3-alpha-isomaltosyltransferase, first identified in Arthrobacter globiformis, that produces cyclic tetrasaccharides together with a closely related enzyme CtsZ. CtsY and CtsZ both have a glycosyl hydrolase family 31 (GH31) catalytic domain. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=97.38 E-value=0.00056 Score=64.98 Aligned_cols=150 Identities=15% Similarity=0.142 Sum_probs=80.9
Q ss_pred hHHHHHHhhhHHHHcCC--CEEEeCCCCCCCC-----CCCCC------c--ccCCCcC--CCCCCHHHHHHHHHHHhhCC
Q 021281 41 WWRNLERKVPDISKSGF--TSVWLPPATHSFA-----PEGYL------P--QNLYSLN--SSYGSEHLLKALLHKMKQHK 103 (314)
Q Consensus 41 ~~~gi~~~ldyl~~lG~--~~I~l~Pi~~~~~-----~~gY~------~--~d~~~id--~~~Gt~~df~~lv~~ah~~G 103 (314)
+-+.+.+.++.+++.|| ++|+|-+-+.... +..|. + .|-+..+ .+| .+.++||+++|++|
T Consensus 22 ~~~ev~~v~~~~~~~~iP~d~i~lD~W~~~~~~~~w~d~~y~~~~~~~~~~~~~~~f~~~~~F---Pdp~~mi~~Lh~~G 98 (340)
T cd06597 22 TQAEVMRQMDAHEEHGIPVTVVVIEQWSDEATFYVFNDAQYTPKDGGAPLSYDDFSFPVEGRW---PNPKGMIDELHEQG 98 (340)
T ss_pred CHHHHHHHHHHHHHcCCCeeEEEEecccCcceeeeeccchhcccccCCcceecccccCccccC---CCHHHHHHHHHHCC
Confidence 46788899999998886 7788864221100 01111 1 1111111 133 36889999999999
Q ss_pred CEEEEeeeeccccCCCCCCCCcCcCCCCCCCCCCCCCcccCCCCCccccCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHH
Q 021281 104 VRAMADIVINHRVGTTQGHGGKYNRYDGIPLSWDEHAVTSCTGGLGNGSTGDNFHGVPNIDHTQHFVRKDIIAWLRWLRN 183 (314)
Q Consensus 104 i~VilD~V~NH~~~~~~~~~~~y~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~~p~v~~~l~~~~~~w~~ 183 (314)
++|++-+.+. +..+.......+..+.. -......++..+|......+.......-+|+.||++++...+.++.+++
T Consensus 99 ~kv~l~v~P~-i~~~~~~~~~~~~~~~~---~~~~g~~vk~~~G~~~~~~~~W~g~~~~~Dftnp~a~~Ww~~~~~~~~~ 174 (340)
T cd06597 99 VKVLLWQIPI-IKLRPHPHGQADNDEDY---AVAQNYLVQRGVGKPYRIPGQWFPDSLMLDFTNPEAAQWWMEKRRYLVD 174 (340)
T ss_pred CEEEEEecCc-cccccccccccchhHHH---HHHCCEEEEcCCCCccccccccCCCceeecCCCHHHHHHHHHHHHHHHH
Confidence 9999855442 22111000000000000 0000001111111110000111122345899999999999999999987
Q ss_pred hCCCCEEEeccCCC
Q 021281 184 TVGFQDFRFDFARG 197 (314)
Q Consensus 184 ~~gvDGfRlDaa~~ 197 (314)
++|||||.+|....
T Consensus 175 ~~Gidg~w~D~~E~ 188 (340)
T cd06597 175 ELGIDGFKTDGGEH 188 (340)
T ss_pred hcCCcEEEecCCCc
Confidence 89999999998754
No 55
>PRK14582 pgaB outer membrane N-deacetylase; Provisional
Probab=97.28 E-value=0.0074 Score=61.97 Aligned_cols=151 Identities=13% Similarity=0.109 Sum_probs=89.3
Q ss_pred cccCCceeEEEE---eeCCCCCCchHHHHHHhhhHHHHcCCCEEEeCCCCCCCC----CCCCCcccCCCcC-CCCCCHHH
Q 021281 20 VIRNGREILFQG---FNWESCKHDWWRNLERKVPDISKSGFTSVWLPPATHSFA----PEGYLPQNLYSLN-SSYGSEHL 91 (314)
Q Consensus 20 ~~~~~~~~i~q~---F~w~~~~~g~~~gi~~~ldyl~~lG~~~I~l~Pi~~~~~----~~gY~~~d~~~id-~~~Gt~~d 91 (314)
...++..+++|+ +.-+-...+.-+.|...|+.|+++|+|+|+|-.+....+ ..-|-|.++.-+- +-|. -
T Consensus 308 ~~~~~~~r~~h~dld~vyd~dp~qq~~~L~~lLdrlk~~G~ntV~lqafadp~gd~~~~s~yfP~~~lp~r~d~f~---~ 384 (671)
T PRK14582 308 VQEKSPQRVMHIDLDYVYDENPQQQDRNIDVLIQRVKDMQISTVYLQAFADPDGDGLVKELYFPNRLLPMRADLFN---R 384 (671)
T ss_pred ccCCCCEEEEEeccccccCCCHHHHHHHHHHHHHHHHHcCCCEEEEEeccCCCCCccccccccCccccccccCCcC---H
Confidence 334666778888 222212234789999999999999999999977655442 2345554333321 1111 1
Q ss_pred HHHHHHHHhhCCCEEEEeeeeccccCCCCCCCCcCcCCCCCCCCCCCCCcccCCCCCccccCCCCCCCCCCCCCCCHHHH
Q 021281 92 LKALLHKMKQHKVRAMADIVINHRVGTTQGHGGKYNRYDGIPLSWDEHAVTSCTGGLGNGSTGDNFHGVPNIDHTQHFVR 171 (314)
Q Consensus 92 f~~lv~~ah~~Gi~VilD~V~NH~~~~~~~~~~~y~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~~p~v~ 171 (314)
+.-.+ +|++|++|..-+.+=-.+-.... .. ...+... .+... ....+ ...|+-.+|+||
T Consensus 385 ~aw~l--~~r~~v~v~AWmp~~~~~~~~~~--~~-------~~~~~~~-----~~~~~---~~~~~--~~rl~P~~pe~r 443 (671)
T PRK14582 385 VAWQL--RTRAGVNVYAWMPVLSFDLDPTL--PR-------VKRLDTG-----EGKAQ---IHPEQ--YRRLSPFDDRVR 443 (671)
T ss_pred HHHHH--HHhhCCEEEEeccceeeccCCCc--ch-------hhhcccc-----CCccc---cCCCC--CcCCCCCCHHHH
Confidence 22222 89999999987655433321100 00 0001000 00000 00001 123888999999
Q ss_pred HHHHHHHHHHHHhCCCCEEEecc
Q 021281 172 KDIIAWLRWLRNTVGFQDFRFDF 194 (314)
Q Consensus 172 ~~l~~~~~~w~~~~gvDGfRlDa 194 (314)
+.|.++...+.+.+.|||+-+|-
T Consensus 444 ~~i~~i~~dla~~~~~dGilf~D 466 (671)
T PRK14582 444 AQVGMLYEDLAGHAAFDGILFHD 466 (671)
T ss_pred HHHHHHHHHHHHhCCCceEEecc
Confidence 99999999999888999999975
No 56
>PF13199 Glyco_hydro_66: Glycosyl hydrolase family 66; PDB: 3VMO_A 3VMN_A 3VMP_A.
Probab=97.27 E-value=0.0012 Score=66.33 Aligned_cols=152 Identities=13% Similarity=0.074 Sum_probs=77.3
Q ss_pred eeCCCCCCchHHHHHHhhhHHHHcCCCEEEeCCCC--------CCCCCCCCCcccCCCcCCCCCCHHHHHHHHHHHhhCC
Q 021281 32 FNWESCKHDWWRNLERKVPDISKSGFTSVWLPPAT--------HSFAPEGYLPQNLYSLNSSYGSEHLLKALLHKMKQHK 103 (314)
Q Consensus 32 F~w~~~~~g~~~gi~~~ldyl~~lG~~~I~l~Pi~--------~~~~~~gY~~~d~~~id~~~Gt~~df~~lv~~ah~~G 103 (314)
|..++..+.+.....+.|+.|+++.+|+|++-=.+ ... ..... .+..+..|-=..+-+|++|++||+.|
T Consensus 107 fls~f~~~~~~~~~~~~i~~L~~yHIN~~QFYDW~~rH~~Pl~~~~--~~~~~-~w~D~~~r~i~~~~Vk~yI~~ah~~G 183 (559)
T PF13199_consen 107 FLSDFDKSKSAEDIEAEIDQLNRYHINGLQFYDWMYRHHKPLPGTN--GQPDQ-TWTDWANRQISTSTVKDYINAAHKYG 183 (559)
T ss_dssp EE---GGGGGHHHHHHHHHHHHHTT--EEEETS--SBTTB-S-SSS---EEE--TT-TTT--EEEHHHHHHHHHHHHHTT
T ss_pred EecCCCCcCCchhHHHHHHHHHhhCcCeEEEEeeccccCCcCCCCC--Cchhh-hhhhhcCCEehHHHHHHHHHHHHHcC
Confidence 33343333367889999999999999999973222 111 00111 13333334445688999999999999
Q ss_pred CEEEEeeeeccccCCCC--CCCCcCcCCCCCCCCCCCCCcccCCCCCccccCCCCCCCCCCCCCCCHHHHHHHHHHHHHH
Q 021281 104 VRAMADIVINHRVGTTQ--GHGGKYNRYDGIPLSWDEHAVTSCTGGLGNGSTGDNFHGVPNIDHTQHFVRKDIIAWLRWL 181 (314)
Q Consensus 104 i~VilD~V~NH~~~~~~--~~~~~y~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~~p~v~~~l~~~~~~w 181 (314)
|++|.=.-+.-...+.. +....+.-|...... .......++++. .++--+|..|++=|++|++-++..
T Consensus 184 mkam~Ynmiyaa~~~~~~~gv~~eW~ly~d~~~~--~~~~~~l~~~w~--------s~lyl~dP~N~~WQ~yI~~q~~~~ 253 (559)
T PF13199_consen 184 MKAMAYNMIYAANNNYEEDGVSPEWGLYKDDSHS--NQDTYDLPDGWP--------SDLYLMDPGNPEWQNYIINQMNKA 253 (559)
T ss_dssp -EEEEEEESSEEETT--S--SS-GGBEEESSSBT--SB-EEEETT-E----------EEEEB-TT-HHHHHHHHHHHHHH
T ss_pred cceehhHhhhccccCcccccCCchhhhhhccCCC--ccceeecCcccc--------cceEEecCCCHHHHHHHHHHHHHH
Confidence 99999544442222211 011111111110000 000011111110 112346889999999999999999
Q ss_pred HHhCCCCEEEeccCC
Q 021281 182 RNTVGFQDFRFDFAR 196 (314)
Q Consensus 182 ~~~~gvDGfRlDaa~ 196 (314)
++.+|+|||-+|...
T Consensus 254 ~~~~gFDG~hlDq~G 268 (559)
T PF13199_consen 254 IQNFGFDGWHLDQLG 268 (559)
T ss_dssp HHHHT--EEEEE-S-
T ss_pred HHccCCceEeeeccC
Confidence 999999999999974
No 57
>cd06599 GH31_glycosidase_Aec37 Glycosyl hydrolase family 31 (GH31) domain of a bacterial protein family represented by Escherichia coli protein Aec37. The gene encoding Aec37 (aec-37) is located within a genomic island (AGI-3) isolated from the extraintestinal avian pathogenic Escherichia coli strain BEN2908. The function of Aec37 and its orthologs is unknown; however, deletion of a region of the genome that includes aec-37 affects the assimilation of seven carbohydrates, decreases growth rate of the strain in minimal medium containing galacturonate or trehalose, and attenuates the virulence of E. coli BEN2908 in chickens. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=97.08 E-value=0.0046 Score=58.16 Aligned_cols=137 Identities=16% Similarity=0.104 Sum_probs=78.2
Q ss_pred HHHHHHhhhHHHHcCC--CEEEeCCCCCCCCCCCCCcccCCCcC-CCCCCHHHHHHHHHHHhhCCCEEEEeeeeccccCC
Q 021281 42 WRNLERKVPDISKSGF--TSVWLPPATHSFAPEGYLPQNLYSLN-SSYGSEHLLKALLHKMKQHKVRAMADIVINHRVGT 118 (314)
Q Consensus 42 ~~gi~~~ldyl~~lG~--~~I~l~Pi~~~~~~~gY~~~d~~~id-~~~Gt~~df~~lv~~ah~~Gi~VilD~V~NH~~~~ 118 (314)
=+.+.+.++.+++.|| ++|+|-+=+... .+..-.+ +..| .+| .+.++||+++|++|+||++-+.+- ++.+
T Consensus 28 q~~v~~~~~~~r~~~iP~d~i~ld~~~~~~--~~~~~~~-f~~d~~~F---Pdp~~mi~~L~~~g~k~~~~i~P~-i~~~ 100 (317)
T cd06599 28 QEALLEFIDKCREHDIPCDSFHLSSGYTSI--EGGKRYV-FNWNKDRF---PDPAAFVAKFHERGIRLAPNIKPG-LLQD 100 (317)
T ss_pred HHHHHHHHHHHHHcCCCeeEEEEecccccc--CCCceee-eecCcccC---CCHHHHHHHHHHCCCEEEEEeCCc-ccCC
Confidence 4678888888988875 778875422211 0100011 3444 344 357799999999999999955443 4333
Q ss_pred CCCCCCcCcCCCCCCCCCCCCCcccCCCCCccccCCCCCCC-CCCCCCCCHHHHHHHHHHHHHHHHhCCCCEEEeccCC
Q 021281 119 TQGHGGKYNRYDGIPLSWDEHAVTSCTGGLGNGSTGDNFHG-VPNIDHTQHFVRKDIIAWLRWLRNTVGFQDFRFDFAR 196 (314)
Q Consensus 119 ~~~~~~~y~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~dln~~~p~v~~~l~~~~~~w~~~~gvDGfRlDaa~ 196 (314)
++. |.-... . ..+....++.. ...+..+.+ ..-+|+.||++++...+.++..+.+.|||||-+|...
T Consensus 101 ~~~----y~e~~~--~----g~~v~~~~g~~-~~~~~~w~g~~~~~Dftnp~a~~ww~~~~~~~~~~~Gvdg~w~D~~E 168 (317)
T cd06599 101 HPR----YKELKE--A----GAFIKPPDGRE-PSIGQFWGGVGSFVDFTNPEGREWWKEGVKEALLDLGIDSTWNDNNE 168 (317)
T ss_pred CHH----HHHHHH--C----CcEEEcCCCCC-cceecccCCCeEeecCCChHHHHHHHHHHHHHHhcCCCcEEEecCCC
Confidence 221 100000 0 00011111110 011112222 2248999999999999999665559999999999764
No 58
>PF13200 DUF4015: Putative glycosyl hydrolase domain
Probab=96.63 E-value=0.021 Score=53.57 Aligned_cols=132 Identities=18% Similarity=0.229 Sum_probs=79.8
Q ss_pred hHHHHHHhhhHHHHcCCCEEEeCCCCCCCCCCCCCcccC-----CCcCCCCCCHHHHHHHHHHHhhCCCEEEEeeeeccc
Q 021281 41 WWRNLERKVPDISKSGFTSVWLPPATHSFAPEGYLPQNL-----YSLNSSYGSEHLLKALLHKMKQHKVRAMADIVINHR 115 (314)
Q Consensus 41 ~~~gi~~~ldyl~~lG~~~I~l~Pi~~~~~~~gY~~~d~-----~~id~~~Gt~~df~~lv~~ah~~Gi~VilD~V~NH~ 115 (314)
+-+.+.+.|+.|++.|.|+|.|- -...+|.=..+. ..+...-....|+++|+++||++||.+|.=+|.=
T Consensus 11 ~~~~~~~~~~~i~~t~lNavVID----vKdd~G~i~y~s~~~~~~~~ga~~~~i~D~~~l~~~l~e~gIY~IARIv~F-- 84 (316)
T PF13200_consen 11 SPERLDKLLDLIKRTELNAVVID----VKDDDGNITYDSQVPLAREIGAVKPYIKDLKALVKKLKEHGIYPIARIVVF-- 84 (316)
T ss_pred CHHHHHHHHHHHHhcCCceEEEE----EecCCceEEecCCCchhhhcccccccccCHHHHHHHHHHCCCEEEEEEEEe--
Confidence 44678899999999999999873 222333221110 0111111124689999999999999999977641
Q ss_pred cCCCCCCCCcCcCCCCCCCCCCCCCcccCCCCCccccCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCCCCEEEeccC
Q 021281 116 VGTTQGHGGKYNRYDGIPLSWDEHAVTSCTGGLGNGSTGDNFHGVPNIDHTQHFVRKDIIAWLRWLRNTVGFQDFRFDFA 195 (314)
Q Consensus 116 ~~~~~~~~~~y~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~~p~v~~~l~~~~~~w~~~~gvDGfRlDaa 195 (314)
.+.. .... ..+|. ....+|.- +. +..+..=+|..+++|++|++++++... +.|+|.+.||-+
T Consensus 85 -kD~~-----la~~---~pe~a----v~~~~G~~--w~--d~~~~~WvnP~~~evw~Y~i~IA~Eaa-~~GFdEIqfDYI 146 (316)
T PF13200_consen 85 -KDPV-----LAEA---HPEWA----VKTKDGSV--WR--DNEGEAWVNPYSKEVWDYNIDIAKEAA-KLGFDEIQFDYI 146 (316)
T ss_pred -cChH-----Hhhh---ChhhE----EECCCCCc--cc--CCCCCccCCCCCHHHHHHHHHHHHHHH-HcCCCEEEeeee
Confidence 1110 0000 00111 01011110 00 112233468888999999999999998 999999999987
Q ss_pred C
Q 021281 196 R 196 (314)
Q Consensus 196 ~ 196 (314)
.
T Consensus 147 R 147 (316)
T PF13200_consen 147 R 147 (316)
T ss_pred e
Confidence 4
No 59
>cd06594 GH31_glucosidase_YihQ YihQ is a bacterial alpha-glucosidase with a conserved glycosyl hydrolase family 31 (GH31) domain that catalyzes the release of an alpha-glucosyl residue from the non-reducing end of alpha-glucoside substrates such as alpha-glucosyl fluoride. Orthologs of YihQ that have not yet been functionally characterized are present in plants and fungi. YihQ has sequence similarity to other GH31 enzymes such as CtsZ, a 6-alpha-glucosyltransferase from Bacillus globisporus, and YicI, an alpha-xylosidase from Echerichia coli. In bacteria, YihQ (along with YihO) is important for bacterial O-antigen capsule assembly and translocation.
Probab=96.63 E-value=0.0057 Score=57.56 Aligned_cols=142 Identities=15% Similarity=0.149 Sum_probs=83.0
Q ss_pred hHHHHHHhhhHHHHcCC--CEEEeCCCCCCC--CCCCCCc-ccCCCcCC-CCCCHHHHHHHHHHHhhCCCEEEEeeeecc
Q 021281 41 WWRNLERKVPDISKSGF--TSVWLPPATHSF--APEGYLP-QNLYSLNS-SYGSEHLLKALLHKMKQHKVRAMADIVINH 114 (314)
Q Consensus 41 ~~~gi~~~ldyl~~lG~--~~I~l~Pi~~~~--~~~gY~~-~d~~~id~-~~Gt~~df~~lv~~ah~~Gi~VilD~V~NH 114 (314)
+-+.+.+.++.+++.|| ++|||- ..... .+.|+.. .+ +..|+ +| .+.++||+++|++|++|++-+. .+
T Consensus 21 s~~~v~~~~~~~~~~~iP~d~i~ld-dw~~~~~~~~g~~~~~~-f~~d~~~F---Pdp~~mi~~Lh~~G~~~~~~i~-P~ 94 (317)
T cd06594 21 GTDKVLEALEKARAAGVKVAGLWLQ-DWTGRRETSFGDRLWWN-WEWDPERY---PGLDELIEELKARGIRVLTYIN-PY 94 (317)
T ss_pred CHHHHHHHHHHHHHcCCCeeEEEEc-cccCcccccccceeeee-eEEChhhC---CCHHHHHHHHHHCCCEEEEEec-Cc
Confidence 37889999999988765 677774 32110 1123211 12 34554 44 3578999999999999999553 44
Q ss_pred ccCCCCCCCCcCcCCCCCCCCCCCCCcccCCCCCccccCCCCC-CCCCCCCCCCHHHHHHHHHHHHHHHHhCCCCEEEec
Q 021281 115 RVGTTQGHGGKYNRYDGIPLSWDEHAVTSCTGGLGNGSTGDNF-HGVPNIDHTQHFVRKDIIAWLRWLRNTVGFQDFRFD 193 (314)
Q Consensus 115 ~~~~~~~~~~~y~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~dln~~~p~v~~~l~~~~~~w~~~~gvDGfRlD 193 (314)
+..+++. + |.. .. .....+...++.. ..+..+ ....-+|+.||++|+...+.++..+.+.|||||-+|
T Consensus 95 v~~~~~~----~--y~~-~~--~~g~~vk~~~g~~--~~~~~w~g~~~~~Dftnp~a~~ww~~~~~~~~~~~Gvdg~w~D 163 (317)
T cd06594 95 LADDGPL----Y--YEE-AK--DAGYLVKDADGSP--YLVDFGEFDCGVLDLTNPAARDWFKQVIKEMLLDLGLSGWMAD 163 (317)
T ss_pred eecCCch----h--HHH-HH--HCCeEEECCCCCe--eeeccCCCCceeeecCCHHHHHHHHHHHHHHhhhcCCcEEEec
Confidence 4443221 1 110 00 0000111111110 101111 122458999999999999999988569999999999
Q ss_pred cCCCCC
Q 021281 194 FARGYS 199 (314)
Q Consensus 194 aa~~i~ 199 (314)
.-..+|
T Consensus 164 ~~E~~p 169 (317)
T cd06594 164 FGEYLP 169 (317)
T ss_pred CCCCCC
Confidence 876554
No 60
>PF14488 DUF4434: Domain of unknown function (DUF4434)
Probab=96.59 E-value=0.012 Score=50.24 Aligned_cols=83 Identities=12% Similarity=0.232 Sum_probs=56.5
Q ss_pred eeEEEEeeCCCCCCc-hHHHHHHhhhHHHHcCCCEEEeCCCCCCCCCCC--CCcccCCCcCCCCCCHHHHHHHHHHHhhC
Q 021281 26 EILFQGFNWESCKHD-WWRNLERKVPDISKSGFTSVWLPPATHSFAPEG--YLPQNLYSLNSSYGSEHLLKALLHKMKQH 102 (314)
Q Consensus 26 ~~i~q~F~w~~~~~g-~~~gi~~~ldyl~~lG~~~I~l~Pi~~~~~~~g--Y~~~d~~~id~~~Gt~~df~~lv~~ah~~ 102 (314)
++.+|.+.|++ ... +-+.=.+.+..++++|+++|.|.= .++.+ +.|..++.-.-..+..+-+..++++|.+.
T Consensus 3 GtF~q~~~~d~-~~~~~~~~W~~~~~~m~~~GidtlIlq~----~~~~~~~~yps~~~~~~~~~~~~d~l~~~L~~A~~~ 77 (166)
T PF14488_consen 3 GTFLQPWSWDI-HQNWTPAQWREEFRAMKAIGIDTLILQW----TGYGGFAFYPSKLSPGGFYMPPVDLLEMILDAADKY 77 (166)
T ss_pred eEEEccccchh-hcCCCHHHHHHHHHHHHHcCCcEEEEEE----eecCCcccCCccccCccccCCcccHHHHHHHHHHHc
Confidence 58999999987 332 455567889999999999998751 11222 22332211111225567899999999999
Q ss_pred CCEEEEeeeec
Q 021281 103 KVRAMADIVIN 113 (314)
Q Consensus 103 Gi~VilD~V~N 113 (314)
||||++-+-++
T Consensus 78 Gmkv~~Gl~~~ 88 (166)
T PF14488_consen 78 GMKVFVGLYFD 88 (166)
T ss_pred CCEEEEeCCCC
Confidence 99999966544
No 61
>cd06591 GH31_xylosidase_XylS XylS is a glycosyl hydrolase family 31 (GH31) alpha-xylosidase found in prokaryotes, eukaryotes, and archaea, that catalyzes the release of alpha-xylose from the non-reducing terminal side of the alpha-xyloside substrate. XylS has been characterized in Sulfolobus solfataricus where it hydrolyzes isoprimeverose, the p-nitrophenyl-beta derivative of isoprimeverose, and xyloglucan oligosaccharides, and has transxylosidic activity. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. The XylS family corresponds to subgroup 3 in the Ernst et al classification of GH31 enzymes.
Probab=96.47 E-value=0.0072 Score=56.87 Aligned_cols=134 Identities=16% Similarity=0.121 Sum_probs=76.9
Q ss_pred hHHHHHHhhhHHHHc--CCCEEEeCCCCCCCCCCCCCcccCCCcCC-CCCCHHHHHHHHHHHhhCCCEEEEeeeeccccC
Q 021281 41 WWRNLERKVPDISKS--GFTSVWLPPATHSFAPEGYLPQNLYSLNS-SYGSEHLLKALLHKMKQHKVRAMADIVINHRVG 117 (314)
Q Consensus 41 ~~~gi~~~ldyl~~l--G~~~I~l~Pi~~~~~~~gY~~~d~~~id~-~~Gt~~df~~lv~~ah~~Gi~VilD~V~NH~~~ 117 (314)
+-+.+.+.++.+++. -++.|+|=--+- ...++ .+ +..|+ +|- +.++||+++|++|+||++-+. -+++.
T Consensus 22 ~~~ev~~~~~~~~~~~iP~d~i~lD~~~~--~~~~~--~~-f~~d~~~FP---dp~~mi~~L~~~G~kv~~~i~-P~v~~ 92 (319)
T cd06591 22 TQEELLDVAKEYRKRGIPLDVIVQDWFYW--PKQGW--GE-WKFDPERFP---DPKAMVRELHEMNAELMISIW-PTFGP 92 (319)
T ss_pred CHHHHHHHHHHHHHhCCCccEEEEechhh--cCCCc--ee-EEEChhhCC---CHHHHHHHHHHCCCEEEEEec-CCcCC
Confidence 467788888888776 567777742111 11121 12 34453 453 467999999999999999554 33444
Q ss_pred CCCCCCCcCcCCCCCCCCCCCCCcccCCCCCccccCCCCCCC-CCCCCCCCHHHHHHHHHHHHHHHHhCCCCEEEeccCC
Q 021281 118 TTQGHGGKYNRYDGIPLSWDEHAVTSCTGGLGNGSTGDNFHG-VPNIDHTQHFVRKDIIAWLRWLRNTVGFQDFRFDFAR 196 (314)
Q Consensus 118 ~~~~~~~~y~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~dln~~~p~v~~~l~~~~~~w~~~~gvDGfRlDaa~ 196 (314)
+++. |..... . ....+..++... . ..+.+ ..-+|+.||++++...+.++..+.+.|||||-+|...
T Consensus 93 ~~~~----y~e~~~--~----g~~v~~~~g~~~--~-~~w~g~~~~~Dftnp~a~~w~~~~~~~~~~~~Gvdg~w~D~~E 159 (319)
T cd06591 93 ETEN----YKEMDE--K----GYLIKTDRGPRV--T-MQFGGNTRFYDATNPEAREYYWKQLKKNYYDKGVDAWWLDAAE 159 (319)
T ss_pred CChh----HHHHHH--C----CEEEEcCCCCee--e-eeCCCCccccCCCCHHHHHHHHHHHHHHhhcCCCcEEEecCCC
Confidence 3221 110000 0 000111111100 0 11222 3458999999999988877655559999999999975
No 62
>cd06600 GH31_MGAM-like This family includes the following closely related glycosyl hydrolase family 31 (GH31) enzymes: maltase-glucoamylase (MGAM), sucrase-isomaltase (SI), lysosomal acid alpha-glucosidase (GAA), neutral alpha-glucosidase C (GANC), the alpha subunit of neutral alpha-glucosidase AB (GANAB), and alpha-glucosidase II. MGAM is one of the two enzymes responsible for catalyzing the last glucose-releasing step in starch digestion. SI is implicated in the digestion of dietary starch and major disaccharides such as sucrose and isomaltose, while GAA degrades glycogen in the lysosome, cleaving both alpha-1,4 and alpha-1,6 glucosidic linkages. MGAM and SI are anchored to small-intestinal brush-border epithelial cells. The absence of SI from the brush border membrane or its malfunction is associated with malabsorption disorders such as congenital sucrase-isomaltase deficiency (CSID). The domain architectures of MGAM and SI include two tandem GH31 catalytic domains, an N-terminal do
Probab=96.26 E-value=0.0095 Score=56.03 Aligned_cols=136 Identities=15% Similarity=0.161 Sum_probs=80.3
Q ss_pred hHHHHHHhhhHHHHcCC--CEEEeCCCCCCCCCCCCCcccCCCcCC-CCCCHHHHHHHHHHHhhCCCEEEEeeeeccccC
Q 021281 41 WWRNLERKVPDISKSGF--TSVWLPPATHSFAPEGYLPQNLYSLNS-SYGSEHLLKALLHKMKQHKVRAMADIVINHRVG 117 (314)
Q Consensus 41 ~~~gi~~~ldyl~~lG~--~~I~l~Pi~~~~~~~gY~~~d~~~id~-~~Gt~~df~~lv~~ah~~Gi~VilD~V~NH~~~ 117 (314)
+-+.+.+.++.+++.+| +.|||-.=+. .+|.. +..|+ +| .+.++||+++|++|+||++-+.+- ++.
T Consensus 22 ~~~~v~~~~~~~~~~~iP~d~i~lD~~~~----~~~~~---f~~d~~~F---Pdp~~~i~~l~~~g~k~~~~~~P~-i~~ 90 (317)
T cd06600 22 PQDKVVEVVDIMQKEGFPYDVVFLDIHYM----DSYRL---FTWDPYRF---PEPKKLIDELHKRNVKLVTIVDPG-IRV 90 (317)
T ss_pred CHHHHHHHHHHHHHcCCCcceEEEChhhh----CCCCc---eeechhcC---CCHHHHHHHHHHCCCEEEEEeecc-ccC
Confidence 46778888888888765 6777653221 12321 33444 44 357899999999999999955433 433
Q ss_pred CCCCCCCcCcCCCCCCCCCCCCCcccCCCCCccccCCCCCCC-CCCCCCCCHHHHHHHHHHHHHHHHhCCCCEEEeccCC
Q 021281 118 TTQGHGGKYNRYDGIPLSWDEHAVTSCTGGLGNGSTGDNFHG-VPNIDHTQHFVRKDIIAWLRWLRNTVGFQDFRFDFAR 196 (314)
Q Consensus 118 ~~~~~~~~y~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~dln~~~p~v~~~l~~~~~~w~~~~gvDGfRlDaa~ 196 (314)
+.. +..|.. ..+ ...+++..++. ...+..+.+ ..-+|+.||++++...+.++..+.+.|||||-+|...
T Consensus 91 ~~~-----~~~~~~-~~~--~~~~v~~~~g~--~~~~~~w~G~~~~~Dftnp~a~~ww~~~~~~~~~~~gvdg~w~D~~E 160 (317)
T cd06600 91 DQN-----YSPFLS-GMD--KGKFCEIESGE--LFVGKMWPGTTVYPDFTNPDTREWWAGLFSEWLNSQGVDGIWLDMNE 160 (317)
T ss_pred CCC-----ChHHHH-HHH--CCEEEECCCCC--eEEEeecCCCccccCCCChHHHHHHHHHHHHHhhcCCCceEEeeCCC
Confidence 211 111110 000 00011111111 011111222 2347999999999999999988879999999999876
Q ss_pred C
Q 021281 197 G 197 (314)
Q Consensus 197 ~ 197 (314)
.
T Consensus 161 p 161 (317)
T cd06600 161 P 161 (317)
T ss_pred C
Confidence 3
No 63
>PF00150 Cellulase: Cellulase (glycosyl hydrolase family 5); InterPro: IPR001547 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 5 GH5 from CAZY comprises enzymes with several known activities; endoglucanase (3.2.1.4 from EC); beta-mannanase (3.2.1.78 from EC); exo-1,3-glucanase (3.2.1.58 from EC); endo-1,6-glucanase (3.2.1.75 from EC); xylanase (3.2.1.8 from EC); endoglycoceramidase (3.2.1.123 from EC). The microbial degradation of cellulose and xylans requires several types of enzymes. Fungi and bacteria produces a spectrum of cellulolytic enzymes (cellulases) and xylanases which, on the basis of sequence similarities, can be classified into families. One of these families is known as the cellulase family A [] or as the glycosyl hydrolases family 5 []. One of the conserved regions in this family contains a conserved glutamic acid residue which is potentially involved [] in the catalytic mechanism.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3NDY_A 3NDZ_B 1LF1_A 1TVP_B 1TVN_A 3AYR_A 3AYS_A 1QI0_A 1W3K_A 1OCQ_A ....
Probab=96.24 E-value=0.0088 Score=54.26 Aligned_cols=80 Identities=18% Similarity=0.317 Sum_probs=54.1
Q ss_pred CCceeEEEEeeCCCCCCchHHHHHHhhhHHHHcCCCEEEeCCCCCCCC--CCCCCcccCCCcCCCCCCHHHHHHHHHHHh
Q 021281 23 NGREILFQGFNWESCKHDWWRNLERKVPDISKSGFTSVWLPPATHSFA--PEGYLPQNLYSLNSSYGSEHLLKALLHKMK 100 (314)
Q Consensus 23 ~~~~~i~q~F~w~~~~~g~~~gi~~~ldyl~~lG~~~I~l~Pi~~~~~--~~gY~~~d~~~id~~~Gt~~df~~lv~~ah 100 (314)
+|+.|..++|....... ....+.++.|+++|+++|=|+-...... ..++ .+++ ...+.|+++|++|+
T Consensus 4 ~G~~v~~~G~n~~w~~~---~~~~~~~~~~~~~G~n~VRi~v~~~~~~~~~~~~------~~~~--~~~~~ld~~v~~a~ 72 (281)
T PF00150_consen 4 NGKPVNWRGFNTHWYNP---SITEADFDQLKALGFNTVRIPVGWEAYQEPNPGY------NYDE--TYLARLDRIVDAAQ 72 (281)
T ss_dssp TSEBEEEEEEEETTSGG---GSHHHHHHHHHHTTESEEEEEEESTSTSTTSTTT------SBTH--HHHHHHHHHHHHHH
T ss_pred CCCeEEeeeeecccCCC---CCHHHHHHHHHHCCCCEEEeCCCHHHhcCCCCCc------cccH--HHHHHHHHHHHHHH
Confidence 57889999999761111 2788899999999999997644321110 1111 1111 23578999999999
Q ss_pred hCCCEEEEeeeec
Q 021281 101 QHKVRAMADIVIN 113 (314)
Q Consensus 101 ~~Gi~VilD~V~N 113 (314)
++||+||+|+--.
T Consensus 73 ~~gi~vild~h~~ 85 (281)
T PF00150_consen 73 AYGIYVILDLHNA 85 (281)
T ss_dssp HTT-EEEEEEEES
T ss_pred hCCCeEEEEeccC
Confidence 9999999988544
No 64
>PF01055 Glyco_hydro_31: Glycosyl hydrolases family 31 ; InterPro: IPR000322 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 31 GH31 from CAZY comprises enzymes with several known activities; alpha-glucosidase (3.2.1.20 from EC), alpha-galactosidase (3.2.1.22 from EC); glucoamylase (3.2.1.3 from EC), sucrase-isomaltase (3.2.1.48 from EC); isomaltase (3.2.1.10 from EC); alpha-xylosidase (3.2.1 from EC); alpha-glucan lyase (4.2.2.13 from EC). Glycoside hydrolase family 31 groups a number of glycosyl hydrolases on the basis of sequence similarities [, , ] An aspartic acid has been implicated [] in the catalytic activity of sucrase, isomaltase, and lysosomal alpha-glucosidase.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3L4U_A 3L4X_A 3L4W_A 3L4V_A 3CTT_A 2QMJ_A 2QLY_A 3L4Z_A 3L4Y_A 3L4T_A ....
Probab=96.05 E-value=0.0064 Score=59.64 Aligned_cols=137 Identities=14% Similarity=0.230 Sum_probs=76.4
Q ss_pred hHHHHHHhhhHHHHcCC--CEEEeCCCCCCCCCCCCCcccCCCcCC-CCCCHHHHHHHHHHHhhCCCEEEEeeeeccccC
Q 021281 41 WWRNLERKVPDISKSGF--TSVWLPPATHSFAPEGYLPQNLYSLNS-SYGSEHLLKALLHKMKQHKVRAMADIVINHRVG 117 (314)
Q Consensus 41 ~~~gi~~~ldyl~~lG~--~~I~l~Pi~~~~~~~gY~~~d~~~id~-~~Gt~~df~~lv~~ah~~Gi~VilD~V~NH~~~ 117 (314)
+-+.+.+.++.+++.|+ +.|+|-.-+.. +|. + +..|+ +| .+.++|++.+|++|++|++-+.+. +..
T Consensus 41 ~~~~v~~~i~~~~~~~iP~d~~~iD~~~~~----~~~--~-f~~d~~~F---Pd~~~~~~~l~~~G~~~~~~~~P~-v~~ 109 (441)
T PF01055_consen 41 NQDEVREVIDRYRSNGIPLDVIWIDDDYQD----GYG--D-FTWDPERF---PDPKQMIDELHDQGIKVVLWVHPF-VSN 109 (441)
T ss_dssp SHHHHHHHHHHHHHTT--EEEEEE-GGGSB----TTB--T-T-B-TTTT---TTHHHHHHHHHHTT-EEEEEEESE-EET
T ss_pred CHHHHHHHHHHHHHcCCCccceeccccccc----ccc--c-cccccccc---cchHHHHHhHhhCCcEEEEEeecc-cCC
Confidence 46788888888888765 55665443322 222 2 34554 33 378899999999999999988773 444
Q ss_pred CCCCCCCcCcCCCCCCCCCCCCCcccCCCCCccccCCCCCC-CCCCCCCCCHHHHHHHHHHHHHHHHhCCCCEEEeccCC
Q 021281 118 TTQGHGGKYNRYDGIPLSWDEHAVTSCTGGLGNGSTGDNFH-GVPNIDHTQHFVRKDIIAWLRWLRNTVGFQDFRFDFAR 196 (314)
Q Consensus 118 ~~~~~~~~y~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~dln~~~p~v~~~l~~~~~~w~~~~gvDGfRlDaa~ 196 (314)
... .|..|.. ... .....+..++.. ..+..+. ...-+|+.||++++...+.++.+++.+|||||-+|...
T Consensus 110 ~~~----~~~~~~~-~~~--~~~~v~~~~g~~--~~~~~w~g~~~~~Dftnp~a~~w~~~~~~~~~~~~Gvdg~w~D~~E 180 (441)
T PF01055_consen 110 DSP----DYENYDE-AKE--KGYLVKNPDGSP--YIGRVWPGKGGFIDFTNPEARDWWKEQLKELLDDYGVDGWWLDFGE 180 (441)
T ss_dssp TTT----B-HHHHH-HHH--TT-BEBCTTSSB---EEEETTEEEEEB-TTSHHHHHHHHHHHHHHHTTST-SEEEEESTT
T ss_pred CCC----cchhhhh-Hhh--cCceeecccCCc--ccccccCCcccccCCCChhHHHHHHHHHHHHHhccCCceEEeecCC
Confidence 332 1111110 000 000111111100 0000111 13447899999999999999999977799999999954
Q ss_pred C
Q 021281 197 G 197 (314)
Q Consensus 197 ~ 197 (314)
.
T Consensus 181 ~ 181 (441)
T PF01055_consen 181 P 181 (441)
T ss_dssp T
T ss_pred c
Confidence 3
No 65
>PRK10658 putative alpha-glucosidase; Provisional
Probab=95.76 E-value=0.022 Score=58.85 Aligned_cols=135 Identities=11% Similarity=0.099 Sum_probs=76.4
Q ss_pred HHHHHhhhHHHHcCC--CEEEeCCCCCCCCCCCCCcccCCCcCC-CCCCHHHHHHHHHHHhhCCCEEEEeeeeccccCCC
Q 021281 43 RNLERKVPDISKSGF--TSVWLPPATHSFAPEGYLPQNLYSLNS-SYGSEHLLKALLHKMKQHKVRAMADIVINHRVGTT 119 (314)
Q Consensus 43 ~gi~~~ldyl~~lG~--~~I~l~Pi~~~~~~~gY~~~d~~~id~-~~Gt~~df~~lv~~ah~~Gi~VilD~V~NH~~~~~ 119 (314)
+.+.+.++.+++.|+ ++|+|-..+.. +|.-.| +..|+ +| .+.+.||+++|++|+||++-+.+ +++.++
T Consensus 283 ~~v~~~~~~~r~~~iP~d~i~lD~~w~~----~~~~~~-f~wd~~~F---Pdp~~mi~~L~~~G~k~~~~i~P-~i~~~s 353 (665)
T PRK10658 283 ATVNSFIDGMAERDLPLHVFHFDCFWMK----EFQWCD-FEWDPRTF---PDPEGMLKRLKAKGLKICVWINP-YIAQKS 353 (665)
T ss_pred HHHHHHHHHHHHcCCCceEEEEchhhhc----CCceee-eEEChhhC---CCHHHHHHHHHHCCCEEEEeccC-CcCCCc
Confidence 456667777777665 45555432211 222223 33443 33 24678999999999999996554 344332
Q ss_pred CCCCCcCcCCCCCCCCCCCCCcccCCCCCccccCCCCC-CCCCCCCCCCHHHHHHHHHHHHHHHHhCCCCEEEeccCCCC
Q 021281 120 QGHGGKYNRYDGIPLSWDEHAVTSCTGGLGNGSTGDNF-HGVPNIDHTQHFVRKDIIAWLRWLRNTVGFQDFRFDFARGY 198 (314)
Q Consensus 120 ~~~~~~y~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~dln~~~p~v~~~l~~~~~~w~~~~gvDGfRlDaa~~i 198 (314)
+ .|.. ... ...++...+|.. +.+..| .+..-+|+.||++|+...+.++.++ +.|||||-.|....+
T Consensus 354 ~-------~f~e-~~~--~gy~vk~~~G~~--~~~~~W~g~~~~~Dftnp~ar~W~~~~~~~l~-d~Gvdgfw~D~gE~~ 420 (665)
T PRK10658 354 P-------LFKE-GKE--KGYLLKRPDGSV--WQWDKWQPGMAIVDFTNPDACKWYADKLKGLL-DMGVDCFKTDFGERI 420 (665)
T ss_pred h-------HHHH-HHH--CCeEEECCCCCE--eeeeecCCCceeecCCCHHHHHHHHHHHHHHH-hcCCcEEEecCCcee
Confidence 2 1110 000 000111111111 111111 2334589999999999999999988 899999999976544
Q ss_pred C
Q 021281 199 S 199 (314)
Q Consensus 199 ~ 199 (314)
|
T Consensus 421 p 421 (665)
T PRK10658 421 P 421 (665)
T ss_pred e
Confidence 3
No 66
>PRK10426 alpha-glucosidase; Provisional
Probab=95.71 E-value=0.066 Score=55.09 Aligned_cols=140 Identities=11% Similarity=0.094 Sum_probs=77.5
Q ss_pred HHHHHHhhhHHHHcC--CCEEEeCCCCCCC--CCCCCCc-ccCCCcCC-CCCCHHHHHHHHHHHhhCCCEEEEeeeeccc
Q 021281 42 WRNLERKVPDISKSG--FTSVWLPPATHSF--APEGYLP-QNLYSLNS-SYGSEHLLKALLHKMKQHKVRAMADIVINHR 115 (314)
Q Consensus 42 ~~gi~~~ldyl~~lG--~~~I~l~Pi~~~~--~~~gY~~-~d~~~id~-~~Gt~~df~~lv~~ah~~Gi~VilD~V~NH~ 115 (314)
-+.+.+.++.+++.| +++|||- -+... .+.|... .| +..|+ +| .+.++||+++|++|+||++-+.+- +
T Consensus 220 ~~~v~~v~~~~r~~~IP~d~i~ld-dw~~~~~~~~g~~~~~~-~~~d~~~F---Pdp~~mi~~L~~~G~k~v~~i~P~-v 293 (635)
T PRK10426 220 TEVVQKKLDTMRNAGVKVNGIWAQ-DWSGIRMTSFGKRLMWN-WKWDSERY---PQLDSRIKQLNEEGIQFLGYINPY-L 293 (635)
T ss_pred HHHHHHHHHHHHHcCCCeeEEEEe-ccccccccccccccccc-ceEChhhC---CCHHHHHHHHHHCCCEEEEEEcCc-c
Confidence 466888888898887 6888884 12111 0111111 01 23332 23 357899999999999999976443 3
Q ss_pred cCCCCCCCCcCcCCCCCCCCCCCCCcccCCCCCccccCCCCC-CCCCCCCCCCHHHHHHHHHHHHHHHHhCCCCEEEecc
Q 021281 116 VGTTQGHGGKYNRYDGIPLSWDEHAVTSCTGGLGNGSTGDNF-HGVPNIDHTQHFVRKDIIAWLRWLRNTVGFQDFRFDF 194 (314)
Q Consensus 116 ~~~~~~~~~~y~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~dln~~~p~v~~~l~~~~~~w~~~~gvDGfRlDa 194 (314)
..+++ .|.. .. .....+...++.. .....+ ....-+|+.||++|+...+.++..+.+.|||||-+|.
T Consensus 294 ~~~~~-------~y~e-~~--~~gy~vk~~~g~~--~~~~~~~~~~~~~Dftnp~ar~Ww~~~~~~~~~~~Gvdg~w~D~ 361 (635)
T PRK10426 294 ASDGD-------LCEE-AA--EKGYLAKDADGGD--YLVEFGEFYAGVVDLTNPEAYEWFKEVIKKNMIGLGCSGWMADF 361 (635)
T ss_pred CCCCH-------HHHH-HH--HCCcEEECCCCCE--EEeEecCCCceeecCCCHHHHHHHHHHHHHHHhhcCCCEEeeeC
Confidence 32221 1110 00 0000111111110 000000 0122479999999999999987655599999999998
Q ss_pred CCCCC
Q 021281 195 ARGYS 199 (314)
Q Consensus 195 a~~i~ 199 (314)
...+|
T Consensus 362 ~E~~p 366 (635)
T PRK10426 362 GEYLP 366 (635)
T ss_pred CCCCC
Confidence 65443
No 67
>cd06602 GH31_MGAM_SI_GAA This family includes the following three closely related glycosyl hydrolase family 31 (GH31) enzymes: maltase-glucoamylase (MGAM), sucrase-isomaltase (SI), and lysosomal acid alpha-glucosidase (GAA), also known as acid-maltase. MGAM is one of the two enzymes responsible for catalyzing the last glucose-releasing step in starch digestion. SI is implicated in the digestion of dietary starch and major disaccharides such as sucrose and isomaltose, while GAA degrades glycogen in the lysosome, cleaving both alpha-1,4 and alpha-1,6 glucosidic linkages. MGAM and SI are anchored to small-intestinal brush-border epithelial cells. The absence of SI from the brush border membrane or its malfunction is associated with malabsorption disorders such as congenital sucrase-isomaltase deficiency (CSID). The domain architectures of MGAM and SI include two tandem GH31 catalytic domains, an N-terminal domain found near the membrane-bound end, and a C-terminal luminal domain. Both of
Probab=95.67 E-value=0.029 Score=53.25 Aligned_cols=139 Identities=12% Similarity=0.158 Sum_probs=78.4
Q ss_pred hHHHHHHhhhHHHHcCC--CEEEeCCCCCCCCCCCCCcccCCCcCC-CCCCHHHH--HHHHHHHhhCCCEEEEeeeeccc
Q 021281 41 WWRNLERKVPDISKSGF--TSVWLPPATHSFAPEGYLPQNLYSLNS-SYGSEHLL--KALLHKMKQHKVRAMADIVINHR 115 (314)
Q Consensus 41 ~~~gi~~~ldyl~~lG~--~~I~l~Pi~~~~~~~gY~~~d~~~id~-~~Gt~~df--~~lv~~ah~~Gi~VilD~V~NH~ 115 (314)
+-+.+.+.++.+++.|| +.|||-.-+.. +|. + +..|+ +|- +. ++||+++|++|+||++-+.+ ++
T Consensus 22 ~~~~v~~~~~~~r~~~iP~d~i~lD~~~~~----~~~--~-f~~d~~~FP---dp~~~~mi~~L~~~G~k~~~~i~P-~v 90 (339)
T cd06602 22 NVDEVKEVVENMRAAGIPLDVQWNDIDYMD----RRR--D-FTLDPVRFP---GLKMPEFVDELHANGQHYVPILDP-AI 90 (339)
T ss_pred CHHHHHHHHHHHHHhCCCcceEEECccccc----Ccc--c-eecccccCC---CccHHHHHHHHHHCCCEEEEEEeC-cc
Confidence 35778888888887665 66776432211 221 1 33443 332 44 89999999999999996543 33
Q ss_pred cCCCCCCCCcCcCCCCCCCCCCCCCcccCCCCCccccCCCCCCC-CCCCCCCCHHHHHHHHHHHHHHHHhCCCCEEEecc
Q 021281 116 VGTTQGHGGKYNRYDGIPLSWDEHAVTSCTGGLGNGSTGDNFHG-VPNIDHTQHFVRKDIIAWLRWLRNTVGFQDFRFDF 194 (314)
Q Consensus 116 ~~~~~~~~~~y~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~dln~~~p~v~~~l~~~~~~w~~~~gvDGfRlDa 194 (314)
..... ...|..|.. ... ....+...++. ...+..+.+ ..-+|+.||++++...+.++.++.+.|||||-+|.
T Consensus 91 ~~~~~--~~~~~~~~e-~~~--~g~~v~~~~g~--~~~~~~w~g~~~~~Dftnp~a~~ww~~~~~~~~~~~Gvdg~w~D~ 163 (339)
T cd06602 91 SANEP--TGSYPPYDR-GLE--MDVFIKNDDGS--PYIGKVWPGYTVFPDFLNPNTQEWWTDEIKDFHDQVPFDGLWIDM 163 (339)
T ss_pred ccCcC--CCCCHHHHH-HHH--CCeEEECCCCC--EEEEEeCCCCCcCcCCCCHHHHHHHHHHHHHHHhcCCCcEEEecC
Confidence 33210 011212210 000 00001111111 001111111 23368999999999999999888779999999998
Q ss_pred CCC
Q 021281 195 ARG 197 (314)
Q Consensus 195 a~~ 197 (314)
...
T Consensus 164 ~Ep 166 (339)
T cd06602 164 NEP 166 (339)
T ss_pred CCC
Confidence 764
No 68
>cd06598 GH31_transferase_CtsZ CtsZ (cyclic tetrasaccharide-synthesizing enzyme Z) is a bacterial 6-alpha-glucosyltransferase, first identified in Arthrobacter globiformis, that produces cyclic tetrasaccharides together with a closely related enzyme CtsY. CtsZ and CtsY both have a glycosyl hydrolase family 31 (GH31) catalytic domain. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=95.45 E-value=0.036 Score=52.10 Aligned_cols=137 Identities=9% Similarity=0.087 Sum_probs=77.6
Q ss_pred hHHHHHHhhhHHHHcCC--CEEEeCCCCCCC-C-CCCCCcccCCCcC-CCCCCHHHHHHHHHHHhhCCCEEEEeeeeccc
Q 021281 41 WWRNLERKVPDISKSGF--TSVWLPPATHSF-A-PEGYLPQNLYSLN-SSYGSEHLLKALLHKMKQHKVRAMADIVINHR 115 (314)
Q Consensus 41 ~~~gi~~~ldyl~~lG~--~~I~l~Pi~~~~-~-~~gY~~~d~~~id-~~~Gt~~df~~lv~~ah~~Gi~VilD~V~NH~ 115 (314)
+-+.+.+.++.+++.|+ +.|+|-.=+... . ...|. + +..| .+|- +.++||+++|++|++|++-+.+ ++
T Consensus 22 ~~~~v~~~~~~~~~~~iP~d~i~lD~~w~~~~~~~~~~~--~-f~wd~~~FP---dp~~mi~~L~~~G~k~~~~v~P-~v 94 (317)
T cd06598 22 NWQEVDDTIKTLREKDFPLDAAILDLYWFGKDIDKGHMG--N-LDWDRKAFP---DPAGMIADLAKKGVKTIVITEP-FV 94 (317)
T ss_pred CHHHHHHHHHHHHHhCCCceEEEEechhhcCcccCCcee--e-eEeccccCC---CHHHHHHHHHHcCCcEEEEEcC-cc
Confidence 45778888888888774 677775422111 0 01111 2 3344 3553 4579999999999999997643 23
Q ss_pred cCCCCCCCCcCcCCCCCCCCCCCCCcccCCCCCccccCCCCC-CCCCCCCCCCHHHHHHHHHHHHHHHHhCCCCEEEecc
Q 021281 116 VGTTQGHGGKYNRYDGIPLSWDEHAVTSCTGGLGNGSTGDNF-HGVPNIDHTQHFVRKDIIAWLRWLRNTVGFQDFRFDF 194 (314)
Q Consensus 116 ~~~~~~~~~~y~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~dln~~~p~v~~~l~~~~~~w~~~~gvDGfRlDa 194 (314)
+.+++. |.--.. ..+ -+.+..++.. ..+..+ ....-+|+.||++++...+.++.++ +.|||||-+|.
T Consensus 95 ~~~~~~----y~e~~~--~g~---l~~~~~~~~~--~~~~~w~g~~~~~Dftnp~a~~w~~~~~~~~~-~~Gvdg~w~D~ 162 (317)
T cd06598 95 LKNSKN----WGEAVK--AGA---LLKKDQGGVP--TLFDFWFGNTGLIDWFDPAAQAWFHDNYKKLI-DQGVTGWWGDL 162 (317)
T ss_pred cCCchh----HHHHHh--CCC---EEEECCCCCE--eeeeccCCCccccCCCCHHHHHHHHHHHHHhh-hCCccEEEecC
Confidence 333321 100000 000 0011001100 000011 1123468899999999999998886 99999999999
Q ss_pred CC
Q 021281 195 AR 196 (314)
Q Consensus 195 a~ 196 (314)
..
T Consensus 163 ~E 164 (317)
T cd06598 163 GE 164 (317)
T ss_pred CC
Confidence 75
No 69
>COG3589 Uncharacterized conserved protein [Function unknown]
Probab=95.36 E-value=0.063 Score=50.22 Aligned_cols=67 Identities=19% Similarity=0.166 Sum_probs=44.8
Q ss_pred EEEeeCCCCCCchHHHHHHhhhHHHHcCCCEEEeCCCCCCCCCCCCCcccCCCcCCCCCCHHHHHHHHHHHhhCCCEEEE
Q 021281 29 FQGFNWESCKHDWWRNLERKVPDISKSGFTSVWLPPATHSFAPEGYLPQNLYSLNSSYGSEHLLKALLHKMKQHKVRAMA 108 (314)
Q Consensus 29 ~q~F~w~~~~~g~~~gi~~~ldyl~~lG~~~I~l~Pi~~~~~~~gY~~~d~~~id~~~Gt~~df~~lv~~ah~~Gi~Vil 108 (314)
+-+|-|..+ .+.-++-|+...+.||+.|..+=.......+ +-.+-|++|+++||+.||+||+
T Consensus 6 fSifp~~~~----~~~~~~Yi~~~~~~Gf~~IFtsl~~~~~~~~--------------~~~~~~~ell~~Anklg~~viv 67 (360)
T COG3589 6 FSIFPNRSP----KEKDIAYIDRMHKYGFKRIFTSLLIPEEDAE--------------LYFHRFKELLKEANKLGLRVIV 67 (360)
T ss_pred EEeccCCCc----chhHHHHHHHHHHcCccceeeecccCCchHH--------------HHHHHHHHHHHHHHhcCcEEEE
Confidence 445555433 3455666777788999999865333222111 1236799999999999999999
Q ss_pred eeeec
Q 021281 109 DIVIN 113 (314)
Q Consensus 109 D~V~N 113 (314)
|+-+.
T Consensus 68 DvnPs 72 (360)
T COG3589 68 DVNPS 72 (360)
T ss_pred EcCHH
Confidence 98443
No 70
>cd06604 GH31_glucosidase_II_MalA Alpha-glucosidase II (alpha-D-glucoside glucohydrolase) is a glycosyl hydrolase family 31 (GH31) enzyme, found in bacteria and plants, which has exo-alpha-1,4-glucosidase and oligo-1,6-glucosidase activities. Alpha-glucosidase II has been characterized in Bacillus thermoamyloliquefaciens where it forms a homohexamer. This family also includes the MalA alpha-glucosidase from Sulfolobus sulfataricus and the AglA alpha-glucosidase from Picrophilus torridus. MalA is part of the carbohydrate-metabolizing machinery that allows this organism to utilize carbohydrates, such as maltose, as the sole carbon and energy source.
Probab=95.17 E-value=0.04 Score=52.28 Aligned_cols=134 Identities=13% Similarity=0.151 Sum_probs=78.7
Q ss_pred hHHHHHHhhhHHHHcCC--CEEEeCCCCCCCCCCCCCcccCCCcCC-CCCCHHHHHHHHHHHhhCCCEEEEeeeeccccC
Q 021281 41 WWRNLERKVPDISKSGF--TSVWLPPATHSFAPEGYLPQNLYSLNS-SYGSEHLLKALLHKMKQHKVRAMADIVINHRVG 117 (314)
Q Consensus 41 ~~~gi~~~ldyl~~lG~--~~I~l~Pi~~~~~~~gY~~~d~~~id~-~~Gt~~df~~lv~~ah~~Gi~VilD~V~NH~~~ 117 (314)
+-+.+.+.++.+++.|| ++|||-+-+.. +|.. +..|+ +|- +.++|++++|++|++|++-+.+ |+..
T Consensus 22 ~~~~v~~~~~~~~~~~iP~d~i~lD~~~~~----~~~~---f~~d~~~fP---dp~~m~~~l~~~g~~~~~~~~P-~v~~ 90 (339)
T cd06604 22 PEEEVREIADEFRERDIPCDAIYLDIDYMD----GYRV---FTWDKERFP---DPKELIKELHEQGFKVVTIIDP-GVKV 90 (339)
T ss_pred CHHHHHHHHHHHHHhCCCcceEEECchhhC----CCCc---eeeccccCC---CHHHHHHHHHHCCCEEEEEEeC-ceeC
Confidence 45778888888888775 67787544322 2322 33454 553 4689999999999999986543 3332
Q ss_pred CCCCCCCcCcCCCCCCCCCCCCCcccCCCCCccccCCCCCCC-CCCCCCCCHHHHHHHHHHHHHHHHhCCCCEEEeccCC
Q 021281 118 TTQGHGGKYNRYDGIPLSWDEHAVTSCTGGLGNGSTGDNFHG-VPNIDHTQHFVRKDIIAWLRWLRNTVGFQDFRFDFAR 196 (314)
Q Consensus 118 ~~~~~~~~y~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~dln~~~p~v~~~l~~~~~~w~~~~gvDGfRlDaa~ 196 (314)
+. .|..|.. ... ...+....++. ...+..+.+ ..-+|+.||++++...+.++..+ +.|||||-+|...
T Consensus 91 ~~-----~~~~~~e-~~~--~g~~v~~~~g~--~~~~~~w~g~~~~~Dftnp~a~~ww~~~~~~~~-~~Gvdg~w~D~~E 159 (339)
T cd06604 91 DP-----GYDVYEE-GLE--NDYFVKDPDGE--LYIGRVWPGLSAFPDFTNPKVREWWGSLYKKFV-DLGVDGIWNDMNE 159 (339)
T ss_pred CC-----CChHHHH-HHH--CCeEEECCCCC--EEEEEecCCCccccCCCChHHHHHHHHHHHHHh-hCCCceEeecCCC
Confidence 21 1111110 000 00001111111 011111111 22369999999999999999888 8999999999754
No 71
>PLN02635 disproportionating enzyme
Probab=95.16 E-value=0.04 Score=55.35 Aligned_cols=58 Identities=14% Similarity=0.003 Sum_probs=43.1
Q ss_pred ccCCceeEEEEeeCCCCC-CchHHHH-HHhhhHHHHcCCCEEEeCCCCCCC-----CCCCCCccc
Q 021281 21 IRNGREILFQGFNWESCK-HDWWRNL-ERKVPDISKSGFTSVWLPPATHSF-----APEGYLPQN 78 (314)
Q Consensus 21 ~~~~~~~i~q~F~w~~~~-~g~~~gi-~~~ldyl~~lG~~~I~l~Pi~~~~-----~~~gY~~~d 78 (314)
+..+.+|++|+|.=..+. -|||... .+-++.+++.|.+.++|+|+.+.. ..+.|.+.+
T Consensus 26 ~~R~~Gvll~l~SLps~~GIGDfg~~a~~fvd~la~~G~~~wQilPL~pt~~~~~~~~SPYs~~S 90 (538)
T PLN02635 26 ARRRAGILLHPTSLPGPYGIGDLGDEAFRFLDWLASTGCSVWQVLPLVPPGRKGGEDGSPYSGQD 90 (538)
T ss_pred CCcceEEEEccccCCCCCCCcchHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCCCCCCCCccccc
Confidence 344568999999855433 3799775 489999999999999999998763 244555544
No 72
>cd06542 GH18_EndoS-like Endo-beta-N-acetylglucosaminidases are bacterial chitinases that hydrolyze the chitin core of various asparagine (N)-linked glycans and glycoproteins. The endo-beta-N-acetylglucosaminidases have a glycosyl hydrolase family 18 (GH18) catalytic domain. Some members also have an additional C-terminal glycosyl hydrolase family 20 (GH20) domain while others have an N-terminal domain of unknown function (pfam08522). Members of this family include endo-beta-N-acetylglucosaminidase S (EndoS) from Streptococcus pyogenes, EndoF1, EndoF2, EndoF3, and EndoH from Flavobacterium meningosepticum, and EndoE from Enterococcus faecalis. EndoS is a secreted endoglycosidase from Streptococcus pyogenes that specifically hydrolyzes the glycan on human IgG between two core N-acetylglucosamine residues. EndoE is a secreted endoglycosidase, encoded by the ndoE gene in Enterococcus faecalis, that hydrolyzes the glycan on human RNase B.
Probab=94.88 E-value=0.13 Score=46.42 Aligned_cols=82 Identities=13% Similarity=0.117 Sum_probs=55.6
Q ss_pred CHHHHHHHHHHHhhCCCEEEEeeeeccccCCCCCCCCcCcCCCCCCCCCCCCCcccCCCCCccccCCCCCCCCCCCCCCC
Q 021281 88 SEHLLKALLHKMKQHKVRAMADIVINHRVGTTQGHGGKYNRYDGIPLSWDEHAVTSCTGGLGNGSTGDNFHGVPNIDHTQ 167 (314)
Q Consensus 88 t~~df~~lv~~ah~~Gi~VilD~V~NH~~~~~~~~~~~y~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~~ 167 (314)
+.+.+++.|+.+|++|+||++=+--+|.+.. + ....+
T Consensus 49 ~~~~~~~~i~~l~~kG~KVl~sigg~~~~~~-----------------~--------------------------~~~~~ 85 (255)
T cd06542 49 LLTNKETYIRPLQAKGTKVLLSILGNHLGAG-----------------F--------------------------ANNLS 85 (255)
T ss_pred hhHHHHHHHHHHhhCCCEEEEEECCCCCCCC-----------------c--------------------------cccCC
Confidence 4688999999999999999996533322210 0 01124
Q ss_pred HHHHHHHHHHHHHHHHhCCCCEEEeccCCCC---------C----HHHHHHHHHhhCC
Q 021281 168 HFVRKDIIAWLRWLRNTVGFQDFRFDFARGY---------S----AKYVKEYIEGARP 212 (314)
Q Consensus 168 p~v~~~l~~~~~~w~~~~gvDGfRlDaa~~i---------~----~~f~~~~~~~~~~ 212 (314)
++-++.+.+.+..++.++|+||+=+|-=... . ..+++++.+.+.+
T Consensus 86 ~~~~~~fa~~l~~~v~~yglDGiDiD~E~~~~~~~~~~~~~~~~~~~lv~~Lr~~~~~ 143 (255)
T cd06542 86 DAAAKAYAKAIVDTVDKYGLDGVDFDDEYSGYGKNGTSQPSNEAFVRLIKELRKYMGP 143 (255)
T ss_pred HHHHHHHHHHHHHHHHHhCCCceEEeeeecccCCCCCCcchHHHHHHHHHHHHHHhCc
Confidence 5667888888888888999999999863211 1 2566666666653
No 73
>cd06562 GH20_HexA_HexB-like Beta-N-acetylhexosaminidases catalyze the removal of beta-1,4-linked N-acetyl-D-hexosamine residues from the non-reducing ends of N-acetyl-beta-D-hexosaminides including N-acetylglucosides and N-acetylgalactosides. The hexA and hexB genes encode the alpha- and beta-subunits of the two major beta-N-acetylhexosaminidase isoenzymes, N-acetyl-beta-D-hexosaminidase A (HexA) and beta-N-acetylhexosaminidase B (HexB). Both the alpha and the beta catalytic subunits have a TIM-barrel fold and belong to the glycosyl hydrolase family 20 (GH20). The HexA enzyme is a heterodimer containing one alpha and one beta subunit while the HexB enzyme is a homodimer containing two beta-subunits. Hexosaminidase mutations cause an inability to properly hydrolyze certain sphingolipids which accumulate in lysosomes within the brain, resulting in the lipid storage disorders Tay-Sachs and Sandhoff. Mutations in the alpha subunit cause in a deficiency in the HexA enzyme and result in
Probab=94.64 E-value=0.37 Score=45.91 Aligned_cols=119 Identities=13% Similarity=0.192 Sum_probs=71.4
Q ss_pred hHHHHHHhhhHHHHcCCCEEEeC-------CC----CCCCCCCC-CCcccCCCcCCCCCCHHHHHHHHHHHhhCCCEEEE
Q 021281 41 WWRNLERKVPDISKSGFTSVWLP-------PA----THSFAPEG-YLPQNLYSLNSSYGSEHLLKALLHKMKQHKVRAMA 108 (314)
Q Consensus 41 ~~~gi~~~ldyl~~lG~~~I~l~-------Pi----~~~~~~~g-Y~~~d~~~id~~~Gt~~df~~lv~~ah~~Gi~Vil 108 (314)
..+.|.+.++.++..++|.+++- |+ ++.-...| |.+ +..| |.+|++++|+-|.++||.||.
T Consensus 16 ~~~~ik~~Id~ma~~KlN~lh~HltDd~~~rle~~~~P~Lt~~ga~~~------~~~Y-T~~di~eiv~yA~~rgI~vIP 88 (348)
T cd06562 16 SVDSIKRTIDAMAYNKLNVLHWHITDSQSFPLESPSYPELSKKGAYSP------SEVY-TPEDVKEIVEYARLRGIRVIP 88 (348)
T ss_pred CHHHHHHHHHHHHHhCCcEEEEeEEcCCCceEeeCCCchhhhccCcCC------CceE-CHHHHHHHHHHHHHcCCEEEE
Confidence 37888999999999999999862 11 11111111 211 1112 899999999999999999999
Q ss_pred eee-eccccCCCCCCCCcCcCCCC-CCCCCCCCCcccCCCCCccccCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhC
Q 021281 109 DIV-INHRVGTTQGHGGKYNRYDG-IPLSWDEHAVTSCTGGLGNGSTGDNFHGVPNIDHTQHFVRKDIIAWLRWLRNTV 185 (314)
Q Consensus 109 D~V-~NH~~~~~~~~~~~y~~f~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~~p~v~~~l~~~~~~w~~~~ 185 (314)
.+- +.|+..-... |..... ....|...+ .-...-.||..+|++.+.+.+++..+++-+
T Consensus 89 EID~PGH~~a~~~~----~p~l~~~~~~~~~~~~---------------~~~~~~~L~~~~~~t~~fl~~vl~E~~~lF 148 (348)
T cd06562 89 EIDTPGHTGSWGQG----YPELLTGCYAVWRKYC---------------PEPPCGQLNPTNPKTYDFLKTLFKEVSELF 148 (348)
T ss_pred eccCchhhHHHHHh----ChhhhCCCCccccccc---------------cCCCCccccCCChhHHHHHHHHHHHHHHhc
Confidence 873 5666542111 100000 000011000 001123488999999999999999888533
No 74
>COG1501 Alpha-glucosidases, family 31 of glycosyl hydrolases [Carbohydrate transport and metabolism]
Probab=94.39 E-value=0.1 Score=54.83 Aligned_cols=95 Identities=12% Similarity=0.060 Sum_probs=57.8
Q ss_pred HHHHHHHHHhhCCCEEEEeeeeccccCCCCCCCCcCcCCCCCCCCCCCCCcccCCCCCccccCCCCCC-CCCCCCCCCHH
Q 021281 91 LLKALLHKMKQHKVRAMADIVINHRVGTTQGHGGKYNRYDGIPLSWDEHAVTSCTGGLGNGSTGDNFH-GVPNIDHTQHF 169 (314)
Q Consensus 91 df~~lv~~ah~~Gi~VilD~V~NH~~~~~~~~~~~y~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~dln~~~p~ 169 (314)
+.+.||+..|++|||+|+=+.+. +..+++. |.. .. ....+++..+| ..+..+.|. ...-+|+.||+
T Consensus 322 ~pk~mi~~l~~~Gikl~~~i~P~-i~~d~~~-------~~e-~~--~~Gy~~k~~~g--~~~~~~~w~~~~a~~DFtnp~ 388 (772)
T COG1501 322 DPKQMIAELHEKGIKLIVIINPY-IKQDSPL-------FKE-AI--EKGYFVKDPDG--EIYQADFWPGNSAFPDFTNPD 388 (772)
T ss_pred CHHHHHHHHHhcCceEEEEeccc-cccCCch-------HHH-HH--HCCeEEECCCC--CEeeecccCCcccccCCCCHH
Confidence 34599999999999999966554 2222220 000 00 00011222221 112222333 45668999999
Q ss_pred HHHHHHH-HHHHHHHhCCCCEEEeccCCCCC
Q 021281 170 VRKDIIA-WLRWLRNTVGFQDFRFDFARGYS 199 (314)
Q Consensus 170 v~~~l~~-~~~~w~~~~gvDGfRlDaa~~i~ 199 (314)
+|+...+ ..+.++ ++|||||=.|.....+
T Consensus 389 ~r~Ww~~~~~~~l~-d~Gv~g~W~D~nEp~~ 418 (772)
T COG1501 389 AREWWASDKKKNLL-DLGVDGFWNDMNEPEP 418 (772)
T ss_pred HHHHHHHHHHhHHH-hcCccEEEccCCCCcc
Confidence 9999995 556677 9999999999975433
No 75
>PF02446 Glyco_hydro_77: 4-alpha-glucanotransferase; InterPro: IPR003385 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The enzymes in this entry (2.4.1.25 from EC) belong to the glycoside hydrolase family 77 GH77 from CAZY, and transfer a segment of a (1,4)-alpha-D-glucan to a new 4-position in an acceptor, which may be glucose or (1,4)-alpha-D-glucan []. They belong to the disproportionating family of enzymes.; GO: 0004134 4-alpha-glucanotransferase activity, 0005975 carbohydrate metabolic process; PDB: 1TZ7_A 2X1I_A 2OWX_A 2OWW_A 1FP9_A 1CWY_A 1ESW_A 1FP8_A 2OWC_A 1X1N_A.
Probab=94.25 E-value=0.13 Score=51.34 Aligned_cols=46 Identities=17% Similarity=0.172 Sum_probs=27.0
Q ss_pred CCchH-HHHHHhhhHHHHcCCCEEEeCCCCCCC--CCCCCCcccCCCcC
Q 021281 38 KHDWW-RNLERKVPDISKSGFTSVWLPPATHSF--APEGYLPQNLYSLN 83 (314)
Q Consensus 38 ~~g~~-~gi~~~ldyl~~lG~~~I~l~Pi~~~~--~~~gY~~~d~~~id 83 (314)
+-||| ..+.+-++.++++|+..++|.|+.+.. .++.|.+.+-+.+|
T Consensus 13 GIGDfg~dl~~~~d~~~~~G~~i~qllpl~pt~~~~~sPY~p~S~~alN 61 (496)
T PF02446_consen 13 GIGDFGDDLYQFIDWAAEAGQSIWQLLPLNPTGPGNSSPYSPSSRFALN 61 (496)
T ss_dssp SS--SSHHHHHHHHHHHHCT--EEE----S-B-TTCTTTTSBS-SSS--
T ss_pred ceecHHHHHHHHHHHHHHcCCCeeccccccCCCCCCCCCCCCCCCCcCC
Confidence 34699 999999999999999999999998765 23368777766666
No 76
>PF07745 Glyco_hydro_53: Glycosyl hydrolase family 53; InterPro: IPR011683 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This domain is found in family 53 of the glycosyl hydrolase classification []. These enzymes are endo-1,4- beta-galactanases (3.2.1.89 from EC). The structure of this domain is known [] and has a TIM barrel fold.; GO: 0015926 glucosidase activity; PDB: 1HJQ_A 1HJS_A 1HJU_B 1FHL_A 1FOB_A 2GFT_A 1UR4_B 1UR0_A 1R8L_B 2CCR_A ....
Probab=94.07 E-value=0.12 Score=49.00 Aligned_cols=54 Identities=15% Similarity=0.131 Sum_probs=35.6
Q ss_pred HHhhhHHHHcCCCEEEeCCCCCCCCCCCCCcccCCCcCCCCCCHHHHHHHHHHHhhCCCEEEEeeee
Q 021281 46 ERKVPDISKSGFTSVWLPPATHSFAPEGYLPQNLYSLNSSYGSEHLLKALLHKMKQHKVRAMADIVI 112 (314)
Q Consensus 46 ~~~ldyl~~lG~~~I~l~Pi~~~~~~~gY~~~d~~~id~~~Gt~~df~~lv~~ah~~Gi~VilD~V~ 112 (314)
.+.++-||+.|+|+|=|--.. .+.. .-+-+.+...+|.++|++.||+|+||+=+
T Consensus 27 ~d~~~ilk~~G~N~vRlRvwv-~P~~------------~g~~~~~~~~~~akrak~~Gm~vlldfHY 80 (332)
T PF07745_consen 27 KDLFQILKDHGVNAVRLRVWV-NPYD------------GGYNDLEDVIALAKRAKAAGMKVLLDFHY 80 (332)
T ss_dssp --HHHHHHHTT--EEEEEE-S-S-TT------------TTTTSHHHHHHHHHHHHHTT-EEEEEE-S
T ss_pred CCHHHHHHhcCCCeEEEEecc-CCcc------------cccCCHHHHHHHHHHHHHCCCeEEEeecc
Confidence 567889999999999553321 1111 33446889999999999999999999943
No 77
>PRK14508 4-alpha-glucanotransferase; Provisional
Probab=94.04 E-value=0.13 Score=51.51 Aligned_cols=67 Identities=10% Similarity=-0.026 Sum_probs=53.1
Q ss_pred CCceeEEEEeeC-CCCCCchHH-HHHHhhhHHHHcCCCEEEeCCCCCCC-CCCCCCcccCCCcCCCCCCH
Q 021281 23 NGREILFQGFNW-ESCKHDWWR-NLERKVPDISKSGFTSVWLPPATHSF-APEGYLPQNLYSLNSSYGSE 89 (314)
Q Consensus 23 ~~~~~i~q~F~w-~~~~~g~~~-gi~~~ldyl~~lG~~~I~l~Pi~~~~-~~~gY~~~d~~~id~~~Gt~ 89 (314)
...+|++|+|.= ...+-|||- .+.+-++.+++.|++.|+|+|+.... ..+.|.+.+-+.+||-|=+.
T Consensus 5 R~~Gv~~~l~SL~~~~GiGDfg~dl~~~id~~~~~G~~~~qilPl~~~~~~~SPY~~~S~~alnplyI~l 74 (497)
T PRK14508 5 RKSGILLHITSLPGSYGIGDFGKGAYEFIDFLAEAGQSYWQILPLGPTGYGDSPYQSFSAFAGNPLLIDL 74 (497)
T ss_pred CceEEEeccccCCCCCCCcchHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCCCCcCcccccccChhhcCh
Confidence 345799999964 222347995 99999999999999999999999765 35689998888888666543
No 78
>KOG1065 consensus Maltase glucoamylase and related hydrolases, glycosyl hydrolase family 31 [Carbohydrate transport and metabolism]
Probab=93.91 E-value=0.65 Score=48.43 Aligned_cols=154 Identities=15% Similarity=0.161 Sum_probs=86.4
Q ss_pred cCccccCCceeEEEEeeCCCCCCchHHHHHHhhhHHHHcCCC--EEEeCCCCCCCCCCCCCcccCCCcCCCCCCHHHHHH
Q 021281 17 LGAVIRNGREILFQGFNWESCKHDWWRNLERKVPDISKSGFT--SVWLPPATHSFAPEGYLPQNLYSLNSSYGSEHLLKA 94 (314)
Q Consensus 17 ~~~~~~~~~~~i~q~F~w~~~~~g~~~gi~~~ldyl~~lG~~--~I~l~Pi~~~~~~~gY~~~d~~~id~~~Gt~~df~~ 94 (314)
+-|++|. .-+|.--|.+. .++.+.+..+.++++|+. .+|.-=-+ -.+ -.||.-=...|++ ++.
T Consensus 291 ~m~pYWs---lGf~~~RwgY~---nls~~~dvv~~~~~agiPld~~~~DiDy----Md~--ykDFTvd~~~fp~---~~~ 355 (805)
T KOG1065|consen 291 AMPPYWS---LGFQLCRWGYK---NLSVVRDVVENYRAAGIPLDVIVIDIDY----MDG--YKDFTVDKVWFPD---LKD 355 (805)
T ss_pred cCCchhh---ccceecccccc---cHHHHHHHHHHHHHcCCCcceeeeehhh----hhc--ccceeeccccCcc---hHH
Confidence 3444444 44555555422 468888888899998885 44421111 112 3443332345655 899
Q ss_pred HHHHHhhCCCEEEEeeeeccccCCCCCCCCcCcCCCCCCCCCCCCCcccCCCCCccccCCCCCCC-CCCCCCCCHHHHHH
Q 021281 95 LLHKMKQHKVRAMADIVINHRVGTTQGHGGKYNRYDGIPLSWDEHAVTSCTGGLGNGSTGDNFHG-VPNIDHTQHFVRKD 173 (314)
Q Consensus 95 lv~~ah~~Gi~VilD~V~NH~~~~~~~~~~~y~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~dln~~~p~v~~~ 173 (314)
+++.+|++|+|+|+=+-++- +.+ ..|..|+.. .. ........+|... ..+..+++ ..=+|+.||.+...
T Consensus 356 fv~~Lh~~G~kyvliidP~i-s~~-----~~y~~y~~g-~~--~~v~I~~~~g~~~-~lg~vwP~~~~fpDftnp~~~~W 425 (805)
T KOG1065|consen 356 FVDDLHARGFKYVLIIDPFI-STN-----SSYGPYDRG-VA--KDVLIKNREGSPK-MLGEVWPGSTAFPDFTNPAVVEW 425 (805)
T ss_pred HHHHHHhCCCeEEEEeCCcc-ccC-----ccchhhhhh-hh--hceeeecccCchh-hhcccCCCcccccccCCchHHHH
Confidence 99999999999988554321 111 113222210 00 0000001111110 11222222 33468899999999
Q ss_pred HHHHHHHHHHhCCCCEEEeccC
Q 021281 174 IIAWLRWLRNTVGFQDFRFDFA 195 (314)
Q Consensus 174 l~~~~~~w~~~~gvDGfRlDaa 195 (314)
..+.++..=++.++|||-+|+-
T Consensus 426 w~~~~~~fh~~vp~dg~wiDmn 447 (805)
T KOG1065|consen 426 WLDELKRFHDEVPFDGFWIDMN 447 (805)
T ss_pred HHHHHHhhcccCCccceEEECC
Confidence 9999888878999999999993
No 79
>PLN02763 hydrolase, hydrolyzing O-glycosyl compounds
Probab=93.72 E-value=0.18 Score=54.01 Aligned_cols=132 Identities=13% Similarity=0.143 Sum_probs=75.1
Q ss_pred HHHHHHhhhHHHHcCC--CEEEeCCCCCCCCCCCCCcccCCCcCC-CCCCHHHHHHHHHHHhhCCCEEEEeeeeccccCC
Q 021281 42 WRNLERKVPDISKSGF--TSVWLPPATHSFAPEGYLPQNLYSLNS-SYGSEHLLKALLHKMKQHKVRAMADIVINHRVGT 118 (314)
Q Consensus 42 ~~gi~~~ldyl~~lG~--~~I~l~Pi~~~~~~~gY~~~d~~~id~-~~Gt~~df~~lv~~ah~~Gi~VilD~V~NH~~~~ 118 (314)
-+.+.+.++.+++.|+ ++|||--=+ ..||.. |..|+ +|- +.++||+++|++|++++.=+.+ ++..+
T Consensus 200 q~eV~eva~~fre~~IP~DvIwlDidY----m~g~~~---FTwD~~rFP---dP~~mv~~Lh~~G~kvv~iidP-gI~~d 268 (978)
T PLN02763 200 AKRVAEIARTFREKKIPCDVVWMDIDY----MDGFRC---FTFDKERFP---DPKGLADDLHSIGFKAIWMLDP-GIKAE 268 (978)
T ss_pred HHHHHHHHHHHHHcCCCceEEEEehhh----hcCCCc---eeECcccCC---CHHHHHHHHHHCCCEEEEEEcC-CCccC
Confidence 4667777777777654 667764221 123332 44554 553 5689999999999999764322 22211
Q ss_pred CCCCCCcCcCCCCCCCCCCCCCcccCCCCCccccCCCCCCCC-CCCCCCCHHHHHHHHHHHHHHHHhCCCCEEEeccC
Q 021281 119 TQGHGGKYNRYDGIPLSWDEHAVTSCTGGLGNGSTGDNFHGV-PNIDHTQHFVRKDIIAWLRWLRNTVGFQDFRFDFA 195 (314)
Q Consensus 119 ~~~~~~~y~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~dln~~~p~v~~~l~~~~~~w~~~~gvDGfRlDaa 195 (314)
..|..+... . .....+...++. .+.+..|.+. .-.|+.||++|+...+.++.++ +.|||||=+|.-
T Consensus 269 -----~gY~~y~eg-~--~~~~fvk~~~G~--~y~G~vWpG~~~fpDFTnP~ar~WW~~~~k~l~-d~GVDG~W~Dmn 335 (978)
T PLN02763 269 -----EGYFVYDSG-C--ENDVWIQTADGK--PFVGEVWPGPCVFPDFTNKKTRSWWANLVKDFV-SNGVDGIWNDMN 335 (978)
T ss_pred -----CCCHHHHhH-h--hcCeeEECCCCC--eeEeeecCCCccccCCCCHHHHHHHHHHHHHHh-cCCCcEEEccCC
Confidence 123332210 0 000111111221 1222233322 2258899999999999999888 799999999984
No 80
>PLN03236 4-alpha-glucanotransferase; Provisional
Probab=93.71 E-value=0.16 Score=52.78 Aligned_cols=72 Identities=19% Similarity=0.214 Sum_probs=59.5
Q ss_pred ccCCceeEEEEeeCCCC---CCchHHHHHHhhhHHHHcCCCEEEeCCCCCCC------CCCCCCcccCCCcCCCCCCHHH
Q 021281 21 IRNGREILFQGFNWESC---KHDWWRNLERKVPDISKSGFTSVWLPPATHSF------APEGYLPQNLYSLNSSYGSEHL 91 (314)
Q Consensus 21 ~~~~~~~i~q~F~w~~~---~~g~~~gi~~~ldyl~~lG~~~I~l~Pi~~~~------~~~gY~~~d~~~id~~~Gt~~d 91 (314)
.+.+.+|++|+|.=.+. +-|||..+.+-++.+++.|.+.|+|+|+.... .++.|.+.+-+++||-|=+.+.
T Consensus 58 ~~R~aGill~l~SLrS~~s~GIGDfgdL~~fvD~~a~~G~~~~QiLPL~~t~~~~~~~dSSPYsp~S~fAlNPlyIdle~ 137 (745)
T PLN03236 58 AWKGSGMALPVFSLRSAESVGAGDFGDLEALVDFAAEAGMSVVQLLPVNDTCVHGTFWDSYPYSSLSVHALHPLYLKLKE 137 (745)
T ss_pred chhhheeeeccccCCCCCCCCcccHHHHHHHHHHHHHcCCCEEEECCCCcCCCCCCCCCCCCcCcccccccChHHcCHHH
Confidence 35567899999986655 34799999999999999999999999998765 1258999999999988877665
Q ss_pred H
Q 021281 92 L 92 (314)
Q Consensus 92 f 92 (314)
+
T Consensus 138 L 138 (745)
T PLN03236 138 L 138 (745)
T ss_pred h
Confidence 5
No 81
>PLN02950 4-alpha-glucanotransferase
Probab=93.69 E-value=0.2 Score=53.50 Aligned_cols=72 Identities=21% Similarity=0.191 Sum_probs=59.9
Q ss_pred cCCceeEEEEeeCCCC---CCchHHHHHHhhhHHHHcCCCEEEeCCCCCCCC------CCCCCcccCCCcCCCCCCHHHH
Q 021281 22 RNGREILFQGFNWESC---KHDWWRNLERKVPDISKSGFTSVWLPPATHSFA------PEGYLPQNLYSLNSSYGSEHLL 92 (314)
Q Consensus 22 ~~~~~~i~q~F~w~~~---~~g~~~gi~~~ldyl~~lG~~~I~l~Pi~~~~~------~~gY~~~d~~~id~~~Gt~~df 92 (314)
+.+.+|++|+|.=.+. +-|||..+.+-+|.+++.|.+.|+|+|+.+... +..|.+.+-++++|-|=+.+++
T Consensus 259 ~R~~Gi~~~l~SLrS~~s~GIGDf~dl~~~id~~a~~G~~~~QilPl~~t~~~~~~~~SsPYs~~S~falNPlyI~l~~l 338 (909)
T PLN02950 259 WRGAGVAVPVFSIRSEEDVGVGEFLDLKLLVDWAVKSGLHLVQLLPVNDTSVHGMWWDSYPYSSLSVFALHPLYLRVQAL 338 (909)
T ss_pred ccceEEEEecccCCCCCCCCeeCHHHHHHHHHHHHHcCCCEEEECCCCCCCCCCCCCCCCCcCcccccccChhhcCHHHH
Confidence 5567899999986555 347999999999999999999999999987652 3479999999999998887666
Q ss_pred H
Q 021281 93 K 93 (314)
Q Consensus 93 ~ 93 (314)
-
T Consensus 339 ~ 339 (909)
T PLN02950 339 S 339 (909)
T ss_pred H
Confidence 3
No 82
>cd06595 GH31_xylosidase_XylS-like This family represents an uncharacterized glycosyl hydrolase family 31 (GH31) enzyme found in bacteria and eukaryotes that is related to the XylS xylosidase of Sulfolobus solfataricus. Alpha-xylosidases catalyze the release of an alpha-xylose residue from the non-reducing end of alpha-xyloside substrates. Enzymes of the GH31 family possess a wide range of different hydrolytic activities including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=93.57 E-value=0.15 Score=47.30 Aligned_cols=128 Identities=12% Similarity=0.074 Sum_probs=73.8
Q ss_pred hHHHHHHhhhHHHHcCC--CEEEeCCCCCCC-----CCCCCCcccCCCcCC-CCCCHHHHHHHHHHHhhCCCEEEEeeee
Q 021281 41 WWRNLERKVPDISKSGF--TSVWLPPATHSF-----APEGYLPQNLYSLNS-SYGSEHLLKALLHKMKQHKVRAMADIVI 112 (314)
Q Consensus 41 ~~~gi~~~ldyl~~lG~--~~I~l~Pi~~~~-----~~~gY~~~d~~~id~-~~Gt~~df~~lv~~ah~~Gi~VilD~V~ 112 (314)
+-+.+.+.++.+++.|| ++|+|=.=+... ...+|. -+..|+ +| .+.++||+++|++|+|||+-+.+
T Consensus 23 s~~ev~~v~~~~r~~~iP~D~i~lD~dw~~~~~~~~~~~~~~---~ft~d~~~F---Pdp~~mi~~Lh~~G~k~v~~v~P 96 (292)
T cd06595 23 SDEEYLALMDRFKKHNIPLDVLVIDMDWHVTDIPSKYGSGWT---GYSWNRKLF---PDPEKLLQDLHDRGLKVTLNLHP 96 (292)
T ss_pred CHHHHHHHHHHHHHhCCCccEEEEecccccccccccccCCcc---eeEEChhcC---CCHHHHHHHHHHCCCEEEEEeCC
Confidence 46788888888887665 667663211110 011222 144553 55 45689999999999999997766
Q ss_pred ccccCCCCCCCCcCcCCCCCCCCCCCCCcccCCCCCccccCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCCCCEEEe
Q 021281 113 NHRVGTTQGHGGKYNRYDGIPLSWDEHAVTSCTGGLGNGSTGDNFHGVPNIDHTQHFVRKDIIAWLRWLRNTVGFQDFRF 192 (314)
Q Consensus 113 NH~~~~~~~~~~~y~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~~p~v~~~l~~~~~~w~~~~gvDGfRl 192 (314)
. ++.+.. ...|..+.. ... .. .. ..+..-+|+.||+.++...+.+..-+.+.|||||=.
T Consensus 97 ~-~~~~~~--~~~y~~~~~-~~~------~~--~~---------~~~~~~~D~tnp~a~~~w~~~~~~~~~~~Gidg~W~ 155 (292)
T cd06595 97 A-DGIRAH--EDQYPEMAK-ALG------VD--PA---------TEGPILFDLTNPKFMDAYFDNVHRPLEKQGVDFWWL 155 (292)
T ss_pred C-cccCCC--cHHHHHHHH-hcC------CC--cc---------cCCeEEecCCCHHHHHHHHHHHHHHHHhcCCcEEEe
Confidence 4 221110 001211100 000 00 00 001134689999999877777655555999999999
Q ss_pred ccC
Q 021281 193 DFA 195 (314)
Q Consensus 193 Daa 195 (314)
|..
T Consensus 156 D~~ 158 (292)
T cd06595 156 DWQ 158 (292)
T ss_pred cCC
Confidence 964
No 83
>TIGR01531 glyc_debranch glycogen debranching enzymye. glycogen debranching enzyme possesses two different catalytic activities; oligo-1,4--1,4-glucantransferase (EC 2.4.1.25) and amylo-1,6-glucosidase (EC 3.2.1.33). Site directed mutagenesis studies in S. cerevisiae indicate that the transferase and glucosidase activities are independent and located in different regions of the polypeptide chain. Proteins in this model belong to the larger alpha-amylase family. The model covers eukaryotic proteins with a seed composed of human, nematode and yeast sequences. Yeast seed sequence is well characterized. The model is quite rigorous; either query sequence yields large bit score or it fails to hit the model altogether. There doesn't appear to be any middle ground.
Probab=93.49 E-value=0.56 Score=51.80 Aligned_cols=64 Identities=13% Similarity=0.271 Sum_probs=52.8
Q ss_pred CCCCCCCCCC-----CHHHHHHHHHHHHHHHHhCCCCEEEeccCCCCCHHHHHHHHHhhC---C-CeEEEcccCC
Q 021281 157 FHGVPNIDHT-----QHFVRKDIIAWLRWLRNTVGFQDFRFDFARGYSAKYVKEYIEGAR---P-IFSVGEYWDS 222 (314)
Q Consensus 157 ~~~~~dln~~-----~p~v~~~l~~~~~~w~~~~gvDGfRlDaa~~i~~~f~~~~~~~~~---~-~~~~gE~~~~ 222 (314)
|.+...|+|. ||.++++|.++.+... .=++|||+|.....|...-+.+++++| | .|+++|-+.+
T Consensus 473 WGDcVKLRYG~~peDsP~LW~~M~~Y~~~~A--kiF~G~RiDNCHSTPlhVaeylLd~AR~vnPnLyV~AELFTG 545 (1464)
T TIGR01531 473 WGDSVKLRYGNKPEDSPYLWQHMKEYTEMTA--RIFDGVRIDNCHSTPIHVAEYLLDAARKYNPNLYVVAELFTG 545 (1464)
T ss_pred ccceeeeccCCCCcCCHHHHHHHHHHHHHHH--HhhcceeeecccCCcHHHHHHHHHHHhhcCCCeEEEeeecCC
Confidence 4566677774 6999999999998875 668999999999999888777777654 5 6899999987
No 84
>PLN02635 disproportionating enzyme
Probab=93.45 E-value=0.21 Score=50.28 Aligned_cols=18 Identities=11% Similarity=0.185 Sum_probs=15.0
Q ss_pred HHHHhhCCCEEEEeeeec
Q 021281 96 LHKMKQHKVRAMADIVIN 113 (314)
Q Consensus 96 v~~ah~~Gi~VilD~V~N 113 (314)
-+.||++||+||-|+.+-
T Consensus 230 ~~yA~~~Gi~L~gDlpi~ 247 (538)
T PLN02635 230 RSYANEKGISIIGDMPIY 247 (538)
T ss_pred HHHHHHCCCEEEEEeecc
Confidence 457999999999999954
No 85
>smart00812 Alpha_L_fucos Alpha-L-fucosidase. O-Glycosyl hydrolases (EC 3.2.1.-) are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site PUBMED:. Because the fold of proteins is better conserved than their sequences, some of the families can be grouped in 'clans'. Family 29 encompasses alpha-L-fucosidases, which is a lysosomal enzyme responsible for hydrolyzing the alpha-1,6-linked fucose joined to the reducing-end N-acetylglucosamine of the carbohydrate moieties of glycoproteins. Deficiency of alpha-L-fucosidase results in the lysosomal storage disease fucosidosis.
Probab=93.41 E-value=1.2 Score=43.11 Aligned_cols=115 Identities=16% Similarity=0.136 Sum_probs=70.0
Q ss_pred HHhhhHHHHcCCCEEEeCCCCCCC-C--CCCCCcccCCCcCCCCCCHHHHHHHHHHHhhCCCEEEEeeeeccccCCCCCC
Q 021281 46 ERKVPDISKSGFTSVWLPPATHSF-A--PEGYLPQNLYSLNSSYGSEHLLKALLHKMKQHKVRAMADIVINHRVGTTQGH 122 (314)
Q Consensus 46 ~~~ldyl~~lG~~~I~l~Pi~~~~-~--~~gY~~~d~~~id~~~Gt~~df~~lv~~ah~~Gi~VilD~V~NH~~~~~~~~ 122 (314)
.+-++-+|++|.+.|-|+-=+.-+ . .+.| .+|..++... ..+-+++|+++|+++||++-+= |..
T Consensus 84 ~~Wa~~~k~AGakY~vlTaKHHDGF~lw~S~~--t~~n~~~~~p-krDiv~el~~A~rk~Glk~G~Y----~S~------ 150 (384)
T smart00812 84 EEWADLFKKAGAKYVVLTAKHHDGFCLWDSKY--SNWNAVDTGP-KRDLVGELADAVRKRGLKFGLY----HSL------ 150 (384)
T ss_pred HHHHHHHHHcCCCeEEeeeeecCCccccCCCC--CCCcccCCCC-CcchHHHHHHHHHHcCCeEEEE----cCH------
Confidence 556778899999999988655432 1 1122 2333344333 5688999999999999999982 211
Q ss_pred CCcCcCCCCCCCCCCCCCcccCCCCCccccCCCCCCCCCCCCCCCHHHHHHH---HHHHHHHHHhCCCCEEEeccCCC
Q 021281 123 GGKYNRYDGIPLSWDEHAVTSCTGGLGNGSTGDNFHGVPNIDHTQHFVRKDI---IAWLRWLRNTVGFQDFRFDFARG 197 (314)
Q Consensus 123 ~~~y~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~~p~v~~~l---~~~~~~w~~~~gvDGfRlDaa~~ 197 (314)
.+|+... |.+.. .........+...+++ ..-++.++..||-|.+=+|.+..
T Consensus 151 -----------~DW~~p~---y~~~~----------~~~~~~~~~~~~~~y~~~~~~Ql~ELit~Ygpd~lWfD~~~~ 204 (384)
T smart00812 151 -----------FDWFNPL---YAGPT----------SSDEDPDNWPRFQEFVDDWLPQLRELVTRYKPDLLWFDGGWE 204 (384)
T ss_pred -----------HHhCCCc---ccccc----------ccccccccchhHHHHHHHHHHHHHHHHhcCCCceEEEeCCCC
Confidence 1222110 00000 0000112234566677 77788899999999999998743
No 86
>TIGR01370 cysRS possible cysteinyl-tRNA synthetase, Methanococcus type. Assignment of this protein family as cysteinyl-tRNA synthetase is controversial, supported by PubMed:11333988 but challenged by PubMed:14679218. Members of this family from Deinococcus radiodurans (bacterial) and Methanococcus jannaschii (archaeal), species lacking a conventional cysteinyl-tRNA synthetase (Cys--tRNA ligase), have been indicated to be a novel form of that enzyme, perhaps distantly related to class I tRNA ligases. The member from Thermotoga maritima is presumed to be a second isozyme of cysteinyl-tRNA synthetase. A number of homologous but more distantly related proteins are annotated as alpha-1,4 polygalactosaminidases.
Probab=93.40 E-value=0.52 Score=44.30 Aligned_cols=41 Identities=12% Similarity=0.204 Sum_probs=34.4
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHHhCCCCEEEeccCCC
Q 021281 156 NFHGVPNIDHTQHFVRKDIIAWLRWLRNTVGFQDFRFDFARG 197 (314)
Q Consensus 156 ~~~~~~dln~~~p~v~~~l~~~~~~w~~~~gvDGfRlDaa~~ 197 (314)
.|.+.-.+++++|+.|+.|.+.+...+ +.|+|||-+|.+..
T Consensus 131 ~W~g~~~vd~~~~~W~~il~~rl~~l~-~kGfDGvfLD~lDs 171 (315)
T TIGR01370 131 DWPGNYDVKYWDPEWKAIAFSYLDRVI-AQGFDGVYLDLIDA 171 (315)
T ss_pred CCCCceeEecccHHHHHHHHHHHHHHH-HcCCCeEeeccchh
Confidence 344555689999999999999988877 99999999998754
No 87
>PF02449 Glyco_hydro_42: Beta-galactosidase; InterPro: IPR013529 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This group of beta-galactosidase enzymes (3.2.1.23 from EC) belong to the glycosyl hydrolase 42 family GH42 from CAZY. The enzyme catalyses the hydrolysis of terminal, non-reducing terminal beta-D-galactosidase residues.; GO: 0004565 beta-galactosidase activity, 0005975 carbohydrate metabolic process, 0009341 beta-galactosidase complex; PDB: 1KWK_A 1KWG_A 3U7V_A.
Probab=93.15 E-value=0.23 Score=47.64 Aligned_cols=124 Identities=13% Similarity=0.120 Sum_probs=69.8
Q ss_pred HHHHHHhhhHHHHcCCCEEEeCCCCCCCCCCCCCcccCCCcCCCCC--CHHHHHHHHHHHhhCCCEEEEeeeeccccCCC
Q 021281 42 WRNLERKVPDISKSGFTSVWLPPATHSFAPEGYLPQNLYSLNSSYG--SEHLLKALLHKMKQHKVRAMADIVINHRVGTT 119 (314)
Q Consensus 42 ~~gi~~~ldyl~~lG~~~I~l~Pi~~~~~~~gY~~~d~~~id~~~G--t~~df~~lv~~ah~~Gi~VilD~V~NH~~~~~ 119 (314)
-+.+++.+.-++++|||+|-|..+.-. .+.|+=| .-+.|.++|+.|+++||+|||-+. .+ ..
T Consensus 9 ~e~~~~d~~~m~~~G~n~vri~~~~W~------------~lEP~eG~ydF~~lD~~l~~a~~~Gi~viL~~~-~~---~~ 72 (374)
T PF02449_consen 9 EEEWEEDLRLMKEAGFNTVRIGEFSWS------------WLEPEEGQYDFSWLDRVLDLAAKHGIKVILGTP-TA---AP 72 (374)
T ss_dssp CCHHHHHHHHHHHHT-SEEEE-CCEHH------------HH-SBTTB---HHHHHHHHHHHCTT-EEEEEEC-TT---TS
T ss_pred HHHHHHHHHHHHHcCCCEEEEEEechh------------hccCCCCeeecHHHHHHHHHHHhccCeEEEEec-cc---cc
Confidence 367888999999999999998776421 1122111 234588999999999999999665 11 11
Q ss_pred CCCCCcCcCCCCCCCCCCCCCcccCCCCCccccCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhC----CCCEEEeccC
Q 021281 120 QGHGGKYNRYDGIPLSWDEHAVTSCTGGLGNGSTGDNFHGVPNIDHTQHFVRKDIIAWLRWLRNTV----GFQDFRFDFA 195 (314)
Q Consensus 120 ~~~~~~y~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~~p~v~~~l~~~~~~w~~~~----gvDGfRlDaa 195 (314)
| .|... -+|.......+|... ........++.+|.+|+++.+.++.+++.+ .|-|+-+|.=
T Consensus 73 P---~Wl~~-------~~Pe~~~~~~~g~~~-----~~g~~~~~~~~~p~yr~~~~~~~~~l~~~y~~~p~vi~~~i~NE 137 (374)
T PF02449_consen 73 P---AWLYD-------KYPEILPVDADGRRR-----GFGSRQHYCPNSPAYREYARRFIRALAERYGDHPAVIGWQIDNE 137 (374)
T ss_dssp ----HHHHC-------CSGCCC-B-TTTSBE-----ECCCSTT-HCCHHHHHHHHHHHHHHHHHHHTTTTTEEEEEECCS
T ss_pred c---cchhh-------hcccccccCCCCCcC-----ccCCccccchhHHHHHHHHHHHHHHHHhhccccceEEEEEeccc
Confidence 1 11100 011100000111100 112234457789999999998887777654 4778988875
Q ss_pred C
Q 021281 196 R 196 (314)
Q Consensus 196 ~ 196 (314)
.
T Consensus 138 ~ 138 (374)
T PF02449_consen 138 P 138 (374)
T ss_dssp T
T ss_pred c
Confidence 3
No 88
>cd06601 GH31_lyase_GLase GLases (alpha-1,4-glucan lyases) are glycosyl hydrolase family 31 (GH31) enzymes that degrade alpha-1,4-glucans and maltooligosaccharides via a nonhydrolytic pathway to yield 1,5-D-anhydrofructose from the nonreducing end. GLases cleave the bond between C1 and O1 of the nonreducing sugar residue of alpha-glucans to generate a monosaccharide product with a double bond between C1 and C2. This family corresponds to subgroup 2 in the Ernst et al classification of GH31 enzymes.
Probab=92.90 E-value=0.37 Score=45.69 Aligned_cols=108 Identities=14% Similarity=0.153 Sum_probs=70.0
Q ss_pred hHHHHHHhhhHHHHcCC--CEEEeCCCCCCCCCCCCCcccCCCcCC-CCCCHHHHHHHHHHHhhCCCEEEEeeeeccccC
Q 021281 41 WWRNLERKVPDISKSGF--TSVWLPPATHSFAPEGYLPQNLYSLNS-SYGSEHLLKALLHKMKQHKVRAMADIVINHRVG 117 (314)
Q Consensus 41 ~~~gi~~~ldyl~~lG~--~~I~l~Pi~~~~~~~gY~~~d~~~id~-~~Gt~~df~~lv~~ah~~Gi~VilD~V~NH~~~ 117 (314)
+-+.+.+.++.+++.++ ++|||-.=+. .+|. -+..|+ +|- +.++||+++|++|++||+-+.+- +.
T Consensus 22 ~~~ev~~v~~~~r~~~IP~D~i~lDidy~----~~~~---~Ft~d~~~FP---dp~~mv~~L~~~G~klv~~i~P~-i~- 89 (332)
T cd06601 22 NRSDLEEVVEGYRDNNIPLDGLHVDVDFQ----DNYR---TFTTNGGGFP---NPKEMFDNLHNKGLKCSTNITPV-IS- 89 (332)
T ss_pred CHHHHHHHHHHHHHcCCCCceEEEcCchh----cCCC---ceeecCCCCC---CHHHHHHHHHHCCCeEEEEecCc-ee-
Confidence 45667777887777664 6777654322 1332 244554 554 35789999999999999865422 11
Q ss_pred CCCCCCCcCcCCCCCCCCCCCCCcccCCCCCccccCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCCCCEEEeccC
Q 021281 118 TTQGHGGKYNRYDGIPLSWDEHAVTSCTGGLGNGSTGDNFHGVPNIDHTQHFVRKDIIAWLRWLRNTVGFQDFRFDFA 195 (314)
Q Consensus 118 ~~~~~~~~y~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~~p~v~~~l~~~~~~w~~~~gvDGfRlDaa 195 (314)
+ + ..|... ... .|+.||++|++..+..+.+. +.|||||=+|..
T Consensus 90 --------~----g--~~~~~~------------------~~~--pDftnp~ar~wW~~~~~~l~-~~Gv~~~W~Dmn 132 (332)
T cd06601 90 --------Y----G--GGLGSP------------------GLY--PDLGRPDVREWWGNQYKYLF-DIGLEFVWQDMT 132 (332)
T ss_pred --------c----C--ccCCCC------------------cee--eCCCCHHHHHHHHHHHHHHH-hCCCceeecCCC
Confidence 0 0 111100 012 46789999999888888887 899999999974
No 89
>cd06545 GH18_3CO4_chitinase The Bacteroides thetaiotaomicron protein represented by pdb structure 3CO4 is an uncharacterized bacterial member of the family 18 glycosyl hydrolases with homologs found in Flavobacterium, Stigmatella, and Pseudomonas.
Probab=92.86 E-value=0.79 Score=41.45 Aligned_cols=80 Identities=8% Similarity=0.159 Sum_probs=56.4
Q ss_pred HHHHHHHHHHHhhCCCEEEEeeeeccccCCCCCCCCcCcCCCCCCCCCCCCCcccCCCCCccccCCCCCCCCCCCCCCCH
Q 021281 89 EHLLKALLHKMKQHKVRAMADIVINHRVGTTQGHGGKYNRYDGIPLSWDEHAVTSCTGGLGNGSTGDNFHGVPNIDHTQH 168 (314)
Q Consensus 89 ~~df~~lv~~ah~~Gi~VilD~V~NH~~~~~~~~~~~y~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~~p 168 (314)
..++..++++||++|+||++=+- ++ .. ..+. . -..+|
T Consensus 45 ~~~~~~~~~~~~~~~~kvl~sig-g~----~~-------------~~~~-----------------------~--~~~~~ 81 (253)
T cd06545 45 RSELNSVVNAAHAHNVKILISLA-GG----SP-------------PEFT-----------------------A--ALNDP 81 (253)
T ss_pred HHHHHHHHHHHHhCCCEEEEEEc-CC----CC-------------Ccch-----------------------h--hhcCH
Confidence 46789999999999999998431 10 00 0000 0 22468
Q ss_pred HHHHHHHHHHHHHHHhCCCCEEEeccCCCCC-----HHHHHHHHHhhC
Q 021281 169 FVRKDIIAWLRWLRNTVGFQDFRFDFARGYS-----AKYVKEYIEGAR 211 (314)
Q Consensus 169 ~v~~~l~~~~~~w~~~~gvDGfRlDaa~~i~-----~~f~~~~~~~~~ 211 (314)
+.|+.+++.+..+++++|+||+-+|--.-.. ..|++++.++++
T Consensus 82 ~~r~~fi~~lv~~~~~~~~DGIdiDwE~~~~~~~~~~~fv~~Lr~~l~ 129 (253)
T cd06545 82 AKRKALVDKIINYVVSYNLDGIDVDLEGPDVTFGDYLVFIRALYAALK 129 (253)
T ss_pred HHHHHHHHHHHHHHHHhCCCceeEEeeccCccHhHHHHHHHHHHHHHh
Confidence 8999999999888899999999999743221 367778877765
No 90
>PRK11052 malQ 4-alpha-glucanotransferase; Provisional
Probab=92.66 E-value=0.3 Score=50.78 Aligned_cols=43 Identities=19% Similarity=0.169 Sum_probs=36.8
Q ss_pred ceeEEEEeeCCC---CCCchHHHHHHhhhHHHHcCCCEEEeCCCCC
Q 021281 25 REILFQGFNWES---CKHDWWRNLERKVPDISKSGFTSVWLPPATH 67 (314)
Q Consensus 25 ~~~i~q~F~w~~---~~~g~~~gi~~~ldyl~~lG~~~I~l~Pi~~ 67 (314)
-++++|+|.=.+ .+-|||..+.+-++.+++.|.+.++|+|++.
T Consensus 144 wGv~~qlySLrs~~~~GIGDfgdl~~l~d~~a~~G~~~~qlnPlha 189 (695)
T PRK11052 144 WGACVQLYTLRSEHNWGIGDFGDLKQMLEDVAKRGGDFIGLNPIHA 189 (695)
T ss_pred eEEEeccccCCCCCCCCeecHHHHHHHHHHHHHcCCCEEEECCCCc
Confidence 469999998554 3347999999999999999999999999983
No 91
>PRK14508 4-alpha-glucanotransferase; Provisional
Probab=92.42 E-value=1.7 Score=43.57 Aligned_cols=24 Identities=21% Similarity=0.243 Sum_probs=21.5
Q ss_pred HHHHHHHHHHhhCCCEEEEeeeec
Q 021281 90 HLLKALLHKMKQHKVRAMADIVIN 113 (314)
Q Consensus 90 ~df~~lv~~ah~~Gi~VilD~V~N 113 (314)
++++++.+.||++||++|.|+.+-
T Consensus 198 ~Q~~~~~~yA~~~Gi~L~gDLpig 221 (497)
T PRK14508 198 RQWKALKAYANDKGIEIIGDLPIY 221 (497)
T ss_pred HHHHHHHHHHHHCCCEEEEeeecc
Confidence 468888999999999999999986
No 92
>PF14883 GHL13: Hypothetical glycosyl hydrolase family 13
Probab=92.35 E-value=3.6 Score=38.05 Aligned_cols=126 Identities=16% Similarity=0.109 Sum_probs=78.0
Q ss_pred hHHHHHHhhhHHHHcCCCEEEeCCCCCCCCCCCCCcccCCCcCCCCCCHHHH-HHHHHHHh-hCCCEEEEeeeeccccCC
Q 021281 41 WWRNLERKVPDISKSGFTSVWLPPATHSFAPEGYLPQNLYSLNSSYGSEHLL-KALLHKMK-QHKVRAMADIVINHRVGT 118 (314)
Q Consensus 41 ~~~gi~~~ldyl~~lG~~~I~l~Pi~~~~~~~gY~~~d~~~id~~~Gt~~df-~~lv~~ah-~~Gi~VilD~V~NH~~~~ 118 (314)
.=+.+..-+++|+++|+++|+|-++....+..-.+. .|-.+.++==.+|+ -+.+=+++ +.|++|+.-+.. .+-+
T Consensus 15 ~~~nl~~l~~ri~~~~~~tV~Lqaf~d~~gdg~~~~--~YFpnr~lpvraDlf~rvawql~tr~~v~VyAWMPv--laf~ 90 (294)
T PF14883_consen 15 QERNLDKLIQRIKDMGINTVYLQAFADPDGDGNADA--VYFPNRHLPVRADLFNRVAWQLRTRAGVKVYAWMPV--LAFD 90 (294)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEEeeeCCCCCCceee--EEcCCCCCchHHHHHHHHHHHHhhhhCCEEEEeeeh--hhcc
Confidence 345677788999999999999999876643322222 23455555545664 44452554 789999998765 2221
Q ss_pred CCCCCCcCcCCCCCCCCCCCCCcccCCCCCccccCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCCCCEEEe
Q 021281 119 TQGHGGKYNRYDGIPLSWDEHAVTSCTGGLGNGSTGDNFHGVPNIDHTQHFVRKDIIAWLRWLRNTVGFQDFRF 192 (314)
Q Consensus 119 ~~~~~~~y~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~~p~v~~~l~~~~~~w~~~~gvDGfRl 192 (314)
-+. . ..+...... .........|..-+|++|+.|.++.+.+.....|||+-+
T Consensus 91 lp~----~-------~~~~~~~~~-----------~~~~~~y~RLSPf~p~~r~~I~~IYeDLA~y~~fdGILF 142 (294)
T PF14883_consen 91 LPK----V-------KRADEVRTD-----------RPDPDGYRRLSPFDPEARQIIKEIYEDLARYSKFDGILF 142 (294)
T ss_pred CCC----c-------chhhhcccc-----------CCCCCCceecCCCCHHHHHHHHHHHHHHHhhCCCCeEEE
Confidence 110 0 001100000 001122345666789999999999999986669999998
No 93
>PF10566 Glyco_hydro_97: Glycoside hydrolase 97 ; InterPro: IPR019563 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is the 97th family of glycosidases, in this case bacterial. The central part of the GH97 family protein sequences represents a typical and complete (beta/alpha)8-barrel or catalytic TIM-barrel type domain. The N- and C-terminal parts of the sequences, mainly consisting of beta-strands, most probably form two additional non-catalytic domains with as yet unknown functions. The non-catalytic domains of glycosidases from the alpha-galactosidase and alpha-glucosidase superfamilies are also predominantly composed of beta-strands, and at least some of these domains are involved in oligomerisation and carbohydrate binding. In all known glycosidases with the (beta-alpha)8-barrel fold, the amino acid residues at the active site are located on the C-termini of the beta-strands []. ; PDB: 2JKP_A 2JKE_A 2D73_B 2ZQ0_B 2JKA_A 3A24_A.
Probab=91.82 E-value=3 Score=38.44 Aligned_cols=60 Identities=12% Similarity=-0.086 Sum_probs=40.0
Q ss_pred hHHHHHHhhhHHHHcCCCEEEeCCCCCCCCC-CCC-CcccCCCcCCCCCCHHHHHHHHHHHhhCCCEEEE
Q 021281 41 WWRNLERKVPDISKSGFTSVWLPPATHSFAP-EGY-LPQNLYSLNSSYGSEHLLKALLHKMKQHKVRAMA 108 (314)
Q Consensus 41 ~~~gi~~~ldyl~~lG~~~I~l~Pi~~~~~~-~gY-~~~d~~~id~~~Gt~~df~~lv~~ah~~Gi~Vil 108 (314)
+.+...+-+|+.+++|+..|.+ +..-+ .+. ...|+....+. .++++||+-|+++|++|+|
T Consensus 30 ~t~~~k~yIDfAa~~G~eYvlv----D~GW~~~~~~~~~d~~~~~~~----~dl~elv~Ya~~KgVgi~l 91 (273)
T PF10566_consen 30 TTETQKRYIDFAAEMGIEYVLV----DAGWYGWEKDDDFDFTKPIPD----FDLPELVDYAKEKGVGIWL 91 (273)
T ss_dssp SHHHHHHHHHHHHHTT-SEEEE----BTTCCGS--TTT--TT-B-TT------HHHHHHHHHHTT-EEEE
T ss_pred CHHHHHHHHHHHHHcCCCEEEe----ccccccccccccccccccCCc----cCHHHHHHHHHHcCCCEEE
Confidence 8999999999999999999998 22211 111 23344444433 7899999999999999999
No 94
>PF05913 DUF871: Bacterial protein of unknown function (DUF871); InterPro: IPR008589 This family consists of several conserved hypothetical proteins from bacteria and archaea. The function of this family is unknown though a number are annotated as outer surface proteins.; PDB: 2P0O_A 1X7F_A.
Probab=91.76 E-value=0.27 Score=47.01 Aligned_cols=62 Identities=18% Similarity=0.211 Sum_probs=42.4
Q ss_pred CCchHHHHHHhhhHHHHcCCCEEEeCCCCCCCCCCCCCcccCCCcCCCCCCHHHHHHHHHHHhhCCCEEEEeeeec
Q 021281 38 KHDWWRNLERKVPDISKSGFTSVWLPPATHSFAPEGYLPQNLYSLNSSYGSEHLLKALLHKMKQHKVRAMADIVIN 113 (314)
Q Consensus 38 ~~g~~~gi~~~ldyl~~lG~~~I~l~Pi~~~~~~~gY~~~d~~~id~~~Gt~~df~~lv~~ah~~Gi~VilD~V~N 113 (314)
+..+++...+.|...++.||+.|+.+=..+- +..--..+.|++|++.||+.||+||+|+-+.
T Consensus 9 ~~~~~~~~~~yi~~a~~~Gf~~iFTSL~ipe--------------~~~~~~~~~~~~l~~~a~~~~~~v~~Disp~ 70 (357)
T PF05913_consen 9 GQSSFEENKAYIEKAAKYGFKRIFTSLHIPE--------------DDPEDYLERLKELLKLAKELGMEVIADISPK 70 (357)
T ss_dssp CCS-HHHHHHHHHHHHCTTEEEEEEEE-----------------------HHHHHHHHHHHHHHCT-EEEEEE-CC
T ss_pred CCCCHHHHHHHHHHHHHCCCCEEECCCCcCC--------------CCHHHHHHHHHHHHHHHHHCCCEEEEECCHH
Confidence 3336888888899999999999987521111 0001125789999999999999999999654
No 95
>cd06565 GH20_GcnA-like Glycosyl hydrolase family 20 (GH20) catalytic domain of N-acetyl-beta-D-glucosaminidase (GcnA, also known as BhsA) and related proteins. GcnA is an exoglucosidase which cleaves N-acetyl-beta-D-galactosamine (NAG) and N-acetyl-beta-D-galactosamine residues from 4-methylumbelliferylated (4MU) substrates, as well as cleaving NAG from chito-oligosaccharides (i.e. NAG polymers). In contrast, sulfated forms of the substrate are unable to be cleaved and act instead as mild competitive inhibitors. Additionally, the enzyme is known to be poisoned by several first-row transition metals as well as by mercury. GcnA forms a homodimer with subunits comprised of three domains, an N-terminal zincin-like domain, this central catalytic GH20 domain, and a C-terminal alpha helical domain. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=91.70 E-value=0.67 Score=43.26 Aligned_cols=113 Identities=6% Similarity=-0.032 Sum_probs=68.6
Q ss_pred hHHHHHHhhhHHHHcCCCEEEeCCCCCCCCCCCCCcccCCCcC--CCCCCHHHHHHHHHHHhhCCCEEEEeee-eccccC
Q 021281 41 WWRNLERKVPDISKSGFTSVWLPPATHSFAPEGYLPQNLYSLN--SSYGSEHLLKALLHKMKQHKVRAMADIV-INHRVG 117 (314)
Q Consensus 41 ~~~gi~~~ldyl~~lG~~~I~l~Pi~~~~~~~gY~~~d~~~id--~~~Gt~~df~~lv~~ah~~Gi~VilD~V-~NH~~~ 117 (314)
..+.|.+.++.|+.+|+|.++|==- . .|...++-.+. ...=|.+|++++++-|.++||.||-.+- +.|+..
T Consensus 15 ~~~~lk~~id~ma~~k~N~l~lhl~-D-----~f~~~~~p~~~~~~~~yT~~ei~ei~~yA~~~gI~vIPeid~pGH~~~ 88 (301)
T cd06565 15 KVSYLKKLLRLLALLGANGLLLYYE-D-----TFPYEGEPEVGRMRGAYTKEEIREIDDYAAELGIEVIPLIQTLGHLEF 88 (301)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEEEe-c-----ceecCCCcccccCCCCcCHHHHHHHHHHHHHcCCEEEecCCCHHHHHH
Confidence 5788999999999999999987210 0 01111111111 1112799999999999999999998552 455543
Q ss_pred CCCCCCCcCcCCCCCCCCCCCCCcccCCCCCccccCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhC
Q 021281 118 TTQGHGGKYNRYDGIPLSWDEHAVTSCTGGLGNGSTGDNFHGVPNIDHTQHFVRKDIIAWLRWLRNTV 185 (314)
Q Consensus 118 ~~~~~~~~y~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~~p~v~~~l~~~~~~w~~~~ 185 (314)
--. +..+ .. .+... ..--.||..+|++.+.+.+.+...+.-+
T Consensus 89 ~l~-----~~~~-------~~--l~~~~------------~~~~~l~~~~~~t~~fi~~li~ev~~~f 130 (301)
T cd06565 89 ILK-----HPEF-------RH--LREVD------------DPPQTLCPGEPKTYDFIEEMIRQVLELH 130 (301)
T ss_pred HHh-----Cccc-------cc--ccccC------------CCCCccCCCChhHHHHHHHHHHHHHHhC
Confidence 110 0001 00 00000 0012478888999999999888887543
No 96
>cd02875 GH18_chitobiase Chitobiase (also known as di-N-acetylchitobiase) is a lysosomal glycosidase that hydrolyzes the reducing-end N-acetylglucosamine from the chitobiose core of oligosaccharides during the ordered degradation of asparagine-linked glycoproteins in eukaryotes. Chitobiase can only do so if the asparagine that joins the oligosaccharide to protein is previously removed by a glycosylasparaginase. Chitobiase is therefore the final step in the lysosomal degradation of the protein/carbohydrate linkage component of asparagine-linked glycoproteins. The catalytic domain of chitobiase is an eight-stranded alpha/beta barrel fold similar to that of other family 18 glycosyl hydrolases such as hevamine and chitotriosidase.
Probab=91.66 E-value=0.43 Score=45.66 Aligned_cols=47 Identities=15% Similarity=0.102 Sum_probs=35.4
Q ss_pred CCCHHHHHHHHHHHHHHHHhCCCCEEEeccCCCCC---------HHHHHHHHHhhC
Q 021281 165 HTQHFVRKDIIAWLRWLRNTVGFQDFRFDFARGYS---------AKYVKEYIEGAR 211 (314)
Q Consensus 165 ~~~p~v~~~l~~~~~~w~~~~gvDGfRlDaa~~i~---------~~f~~~~~~~~~ 211 (314)
..+|+.|+.+++.+..+++++|.||+-+|-=.-.. ..|++++.++.+
T Consensus 91 l~~~~~R~~fi~siv~~~~~~gfDGIdIDwE~p~~~~~~d~~~~t~llkelr~~l~ 146 (358)
T cd02875 91 ISNPTYRTQWIQQKVELAKSQFMDGINIDIEQPITKGSPEYYALTELVKETTKAFK 146 (358)
T ss_pred cCCHHHHHHHHHHHHHHHHHhCCCeEEEcccCCCCCCcchHHHHHHHHHHHHHHHh
Confidence 34689999999999888899999999999632211 256777776654
No 97
>PRK11052 malQ 4-alpha-glucanotransferase; Provisional
Probab=91.60 E-value=0.49 Score=49.23 Aligned_cols=62 Identities=18% Similarity=0.244 Sum_probs=35.6
Q ss_pred CCCCCCchHHHHHHhhhHHH--HcCCCEEE-eCCCCCCCCCCCCCcccCCCcCCCCCCHHHHHHHH
Q 021281 34 WESCKHDWWRNLERKVPDIS--KSGFTSVW-LPPATHSFAPEGYLPQNLYSLNSSYGSEHLLKALL 96 (314)
Q Consensus 34 w~~~~~g~~~gi~~~ldyl~--~lG~~~I~-l~Pi~~~~~~~gY~~~d~~~id~~~Gt~~df~~lv 96 (314)
|.+-.=|++..+.+.+.... -.|++=|. +.|.-+. ..+.|.+.+-+.+||-|=+.+++-++.
T Consensus 159 ~GIGDfgdl~~l~d~~a~~G~~~~qlnPlha~~p~~p~-~~SPYsp~Sr~alNPlyI~~e~l~e~~ 223 (695)
T PRK11052 159 WGIGDFGDLKQMLEDVAKRGGDFIGLNPIHALYPANPE-SASPYSPSSRRWLNVIYIDVNAVEDFQ 223 (695)
T ss_pred CCeecHHHHHHHHHHHHHcCCCEEEECCCCcCCCCCCC-CCCCcccccccccChHHcCHHHHhhhh
Confidence 33333344666666555332 23455555 3333221 356799999999998888877665543
No 98
>cd06564 GH20_DspB_LnbB-like Glycosyl hydrolase family 20 (GH20) catalytic domain of dispersin B (DspB), lacto-N-biosidase (LnbB) and related proteins. Dispersin B is a soluble beta-N-acetylglucosamidase found in bacteria that hydrolyzes the beta-1,6-linkages of PGA (poly-beta-(1,6)-N-acetylglucosamine), a major component of the extracellular polysaccharide matrix. Lacto-N-biosidase hydrolyzes lacto-N-biose (LNB) type I oligosaccharides at the nonreducing terminus to produce lacto-N-biose as part of the GNB/LNB (galacto-N-biose/lacto-N-biose I) degradation pathway. The lacto-N-biosidase from Bifidobacterium bifidum has this GH20 domain, a carbohydrate binding module 32, and a bacterial immunoglobulin-like domain 2, as well as a YSIRK signal peptide and a G5 membrane anchor at the N and C termini, respectively. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=91.54 E-value=1.4 Score=41.60 Aligned_cols=122 Identities=15% Similarity=0.113 Sum_probs=71.9
Q ss_pred hHHHHHHhhhHHHHcCCCEEEe--CC-------CCCCCCCCC-CCc------ccCCC--cCCCCCCHHHHHHHHHHHhhC
Q 021281 41 WWRNLERKVPDISKSGFTSVWL--PP-------ATHSFAPEG-YLP------QNLYS--LNSSYGSEHLLKALLHKMKQH 102 (314)
Q Consensus 41 ~~~gi~~~ldyl~~lG~~~I~l--~P-------i~~~~~~~g-Y~~------~d~~~--id~~~Gt~~df~~lv~~ah~~ 102 (314)
..+.|.+.++.++..++|.++| += .++.....| |.. ..... -...+=|.+|+|++|+-|.++
T Consensus 15 ~~~~ik~~id~ma~~K~N~lhlHltD~~~~~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~YT~~di~eiv~yA~~r 94 (326)
T cd06564 15 SMDFLKDIIKTMSWYKMNDLQLHLNDNLIFNLDDMSTTVNNATYASDDVKSGNNYYNLTANDGYYTKEEFKELIAYAKDR 94 (326)
T ss_pred CHHHHHHHHHHHHHcCCceEEEeecCCcccccCCCchhhhhhhhhccccccccccCCCCCCCCcccHHHHHHHHHHHHHc
Confidence 3788999999999999999987 11 010000000 000 00000 011222899999999999999
Q ss_pred CCEEEEeee-eccccCCCCCCCCcCcCCCCCCCCCCCCCcccCCCCCccccCCCCCCCCCCCCCCCHHHHHHHHHHHHHH
Q 021281 103 KVRAMADIV-INHRVGTTQGHGGKYNRYDGIPLSWDEHAVTSCTGGLGNGSTGDNFHGVPNIDHTQHFVRKDIIAWLRWL 181 (314)
Q Consensus 103 Gi~VilD~V-~NH~~~~~~~~~~~y~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~~p~v~~~l~~~~~~w 181 (314)
||.||-.+- +.|+..--. .| + ..... +. ........||..+|++.+.+.+++...
T Consensus 95 gI~vIPEID~PGH~~a~~~----~~-p------el~~~--~~-----------~~~~~~~~l~~~~~~t~~f~~~l~~E~ 150 (326)
T cd06564 95 GVNIIPEIDSPGHSLAFTK----AM-P------ELGLK--NP-----------FSKYDKDTLDISNPEAVKFVKALFDEY 150 (326)
T ss_pred CCeEeccCCCcHHHHHHHH----hh-H------HhcCC--Cc-----------ccCCCcccccCCCHHHHHHHHHHHHHH
Confidence 999998763 555543111 01 0 00000 00 011223457889999999999999998
Q ss_pred HHhCC
Q 021281 182 RNTVG 186 (314)
Q Consensus 182 ~~~~g 186 (314)
+.-+.
T Consensus 151 ~~~f~ 155 (326)
T cd06564 151 LDGFN 155 (326)
T ss_pred HHhcC
Confidence 86555
No 99
>cd06603 GH31_GANC_GANAB_alpha This family includes the closely related glycosyl hydrolase family 31 (GH31) isozymes, neutral alpha-glucosidase C (GANC) and the alpha subunit of heterodimeric neutral alpha-glucosidase AB (GANAB). Initially distinguished on the basis of differences in electrophoretic mobility in starch gel, GANC and GANAB have been shown to have other differences, including those of substrate specificity. GANC and GANAB are key enzymes in glycogen metabolism that hydrolyze terminal, non-reducing 1,4-linked alpha-D-glucose residues from glycogen in the endoplasmic reticulum. The GANC/GANAB family includes the alpha-glucosidase II (ModA) from Dictyostelium discoideum as well as the alpha-glucosidase II (GLS2, or ROT2 - Reversal of TOR2 lethality protein 2) from Saccharomyces cerevisiae.
Probab=91.46 E-value=0.36 Score=45.78 Aligned_cols=134 Identities=10% Similarity=0.076 Sum_probs=77.4
Q ss_pred hHHHHHHhhhHHHHcCC--CEEEeCCCCCCCCCCCCCcccCCCcCC-CCCCHHHHHHHHHHHhhCCCEEEEeeeeccccC
Q 021281 41 WWRNLERKVPDISKSGF--TSVWLPPATHSFAPEGYLPQNLYSLNS-SYGSEHLLKALLHKMKQHKVRAMADIVINHRVG 117 (314)
Q Consensus 41 ~~~gi~~~ldyl~~lG~--~~I~l~Pi~~~~~~~gY~~~d~~~id~-~~Gt~~df~~lv~~ah~~Gi~VilD~V~NH~~~ 117 (314)
+-+.+.+.++.+++.|| +.|+|-.-+. .+|.. +..|+ +|- +.+.||+++|++|+||++-+.+- +..
T Consensus 22 ~~~ev~~~~~~~~~~~iP~d~i~lD~~~~----~~~~~---f~~d~~~FP---dp~~mi~~L~~~G~k~~~~~~P~-v~~ 90 (339)
T cd06603 22 DQEDVKEVDAGFDEHDIPYDVIWLDIEHT----DGKRY---FTWDKKKFP---DPEKMQEKLASKGRKLVTIVDPH-IKR 90 (339)
T ss_pred CHHHHHHHHHHHHHcCCCceEEEEChHHh----CCCCc---eEeCcccCC---CHHHHHHHHHHCCCEEEEEecCc-eec
Confidence 56778888888888665 6677653221 13321 44554 453 56899999999999999977543 222
Q ss_pred CCCCCCCcCcCCCCCCCCCCCCCcccCCCCCccccCCCCCCC-CCCCCCCCHHHHHHHHHHHHHHHH--hCCCCEEEecc
Q 021281 118 TTQGHGGKYNRYDGIPLSWDEHAVTSCTGGLGNGSTGDNFHG-VPNIDHTQHFVRKDIIAWLRWLRN--TVGFQDFRFDF 194 (314)
Q Consensus 118 ~~~~~~~~y~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~dln~~~p~v~~~l~~~~~~w~~--~~gvDGfRlDa 194 (314)
+. .+..|.. ... ....+...++. ...+..+.+ ..-+|+.||++++...+.++..+. ..|++||=+|.
T Consensus 91 ~~-----~~~~y~e-~~~--~g~~vk~~~g~--~~~~~~w~g~~~~~Dftnp~a~~ww~~~~~~~~~~~~~g~~g~w~D~ 160 (339)
T cd06603 91 DD-----GYYVYKE-AKD--KGYLVKNSDGG--DFEGWCWPGSSSWPDFLNPEVRDWWASLFSYDKYKGSTENLYIWNDM 160 (339)
T ss_pred CC-----CCHHHHH-HHH--CCeEEECCCCC--EEEEEECCCCcCCccCCChhHHHHHHHHHHHHhhcccCCCceEEecc
Confidence 11 0111110 000 00001111110 011111221 235899999999999999998874 36999998887
Q ss_pred C
Q 021281 195 A 195 (314)
Q Consensus 195 a 195 (314)
.
T Consensus 161 ~ 161 (339)
T cd06603 161 N 161 (339)
T ss_pred C
Confidence 5
No 100
>PF01120 Alpha_L_fucos: Alpha-L-fucosidase; InterPro: IPR000933 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Family 29 (GH29 from CAZY) encompasses alpha-L-fucosidases (3.2.1.51 from EC) [], which is a lysosomal enzyme responsible for hydrolyzing the alpha-1,6-linked fucose joined to the reducing-end N-acetylglucosamine of the carbohydrate moieties of glycoproteins. Alpha-L-fucosidase is responsible for hydrolysing the alpha-1,6-linked fucose joined to the reducing-end N-acetylglucosamine of the carbohydrate moieties of glycoproteins. Fucosylated glycoconjugates are involved in numerous biological events, making alpha-l-fucosidases, the enzymes responsible for their processing, critically important. Deficiency in alpha-l-fucosidase activity is associated with fucosidosis, a lysosomal storage disorder characterised by rapid neurodegeneration, resulting in severe mental and motor deterioration []. The enzyme is a hexamer and displays a two-domain fold, composed of a catalytic (beta/alpha)(8)-like domain and a C-terminal beta-sandwich domain []. Drosophila melanogaster spermatozoa contains an alpha-l-fucosidase that might be involved in fertilisation by interacting with alpha-l-fucose residues on the micropyle of the eggshell []. In human sperm, membrane-associated alpha-l-fucosidase is stable for extended periods of time, which is made possible by membrane domains and compartmentalisation. These help preserve protein integrity []. ; GO: 0004560 alpha-L-fucosidase activity, 0005975 carbohydrate metabolic process; PDB: 3EYP_B 2ZX6_A 2ZWY_B 2ZX8_B 2WSP_A 2ZXA_A 2ZWZ_B 1ODU_B 1HL9_A 2ZX5_B ....
Probab=91.26 E-value=2.9 Score=39.83 Aligned_cols=123 Identities=14% Similarity=0.034 Sum_probs=65.0
Q ss_pred HHHhhhHHHHcCCCEEEeCCCCCCC-CCCCCCcccCCCcCCCCCCHHHHHHHHHHHhhCCCEEEEeeeeccccCCCCCCC
Q 021281 45 LERKVPDISKSGFTSVWLPPATHSF-APEGYLPQNLYSLNSSYGSEHLLKALLHKMKQHKVRAMADIVINHRVGTTQGHG 123 (314)
Q Consensus 45 i~~~ldyl~~lG~~~I~l~Pi~~~~-~~~gY~~~d~~~id~~~Gt~~df~~lv~~ah~~Gi~VilD~V~NH~~~~~~~~~ 123 (314)
..+-++-+|++|++.|.|+--+..+ .-+.=..++|...+ .-+..+=+++|+++|+++|||+.+ +.|..
T Consensus 93 ~dqW~~~ak~aGakY~VlTakHHDGF~LW~S~~t~~~v~~-~~~krDiv~El~~A~rk~Glk~G~-----Y~S~~----- 161 (346)
T PF01120_consen 93 ADQWAKLAKDAGAKYVVLTAKHHDGFCLWPSKYTDYNVVN-SGPKRDIVGELADACRKYGLKFGL-----YYSPW----- 161 (346)
T ss_dssp HHHHHHHHHHTT-SEEEEEEE-TT--BSS--TT-SSBGGG-GGGTS-HHHHHHHHHHHTT-EEEE-----EEESS-----
T ss_pred HHHHHHHHHHcCCCEEEeehhhcCccccCCCCCCcccccC-CCCCCCHHHHHHHHHHHcCCeEEE-----Eecch-----
Confidence 3566778899999999998765443 00000112222233 223457899999999999999999 22221
Q ss_pred CcCcCCCCCCCCCCCCCcccCCCCCccccCCCCCCCCCCCCCC-CHHHHHHHHHHHHHHHHhCCCCEEEeccCCC
Q 021281 124 GKYNRYDGIPLSWDEHAVTSCTGGLGNGSTGDNFHGVPNIDHT-QHFVRKDIIAWLRWLRNTVGFQDFRFDFARG 197 (314)
Q Consensus 124 ~~y~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~-~p~v~~~l~~~~~~w~~~~gvDGfRlDaa~~ 197 (314)
+|+...... +.... ....++..-. ...+.+++..-++.++.+|.+|.+=+|....
T Consensus 162 -----------dw~~~~~~~--~~~~~------~~~~~~~~~~~~~~~~~~~~~ql~EL~~~Y~~d~lWfDg~~~ 217 (346)
T PF01120_consen 162 -----------DWHHPDYPP--DEEGD------ENGPADGPGNWQRYYNEYWLAQLRELLTRYKPDILWFDGGWP 217 (346)
T ss_dssp -----------SCCCTTTTS--SCHCH------HCC--HCCHHHHHHHHHHHHHHHHHHHHCSTESEEEEESTTS
T ss_pred -----------HhcCcccCC--CccCC------cccccccchhhHhHhhhhhHHHHHHHHhCCCcceEEecCCCC
Confidence 111100000 00000 0000000000 1234557778889999999999999999864
No 101
>cd02742 GH20_hexosaminidase Beta-N-acetylhexosaminidases of glycosyl hydrolase family 20 (GH20) catalyze the removal of beta-1,4-linked N-acetyl-D-hexosamine residues from the non-reducing ends of N-acetyl-beta-D-hexosaminides including N-acetylglucosides and N-acetylgalactosides. These enzymes are broadly distributed in microorganisms, plants and animals, and play roles in various key physiological and pathological processes. These processes include cell structural integrity, energy storage, cellular signaling, fertilization, pathogen defense, viral penetration, the development of carcinomas, inflammatory events and lysosomal storage disorders. The GH20 enzymes include the eukaryotic beta-N-acetylhexosaminidases A and B, the bacterial chitobiases, dispersin B, and lacto-N-biosidase. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by the solvent or the enzyme, but by the substrate itself.
Probab=91.06 E-value=0.66 Score=43.29 Aligned_cols=120 Identities=11% Similarity=0.055 Sum_probs=70.6
Q ss_pred hHHHHHHhhhHHHHcCCCEEEeC-----------CCCCCCCCCCCCcccCCCcCCCCCCHHHHHHHHHHHhhCCCEEEEe
Q 021281 41 WWRNLERKVPDISKSGFTSVWLP-----------PATHSFAPEGYLPQNLYSLNSSYGSEHLLKALLHKMKQHKVRAMAD 109 (314)
Q Consensus 41 ~~~gi~~~ldyl~~lG~~~I~l~-----------Pi~~~~~~~gY~~~d~~~id~~~Gt~~df~~lv~~ah~~Gi~VilD 109 (314)
..+.|.+.++.++..++|.++|- +-++.-...|-. ...+.... +=|.+|++++|+-|.++||.||-.
T Consensus 14 ~~~~lk~~id~ma~~K~N~lhlHl~D~~~~~le~~~~p~l~~~g~~-~~~~~~~~-~yT~~di~elv~yA~~rgI~viPE 91 (303)
T cd02742 14 SVESIKRTIDVLARYKINTFHWHLTDDQAWRIESKKFPELAEKGGQ-INPRSPGG-FYTYAQLKDIIEYAAARGIEVIPE 91 (303)
T ss_pred CHHHHHHHHHHHHHhCCcEEEEeeecCCCceEeeCccchhhhhccc-ccCCCCCC-eECHHHHHHHHHHHHHcCCEEEEe
Confidence 47888999999999999999762 111110101100 00011111 227899999999999999999998
Q ss_pred ee-eccccCCCCCCCCcCcCCCCCCCCCCCCCcccCCCCCccccCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHH
Q 021281 110 IV-INHRVGTTQGHGGKYNRYDGIPLSWDEHAVTSCTGGLGNGSTGDNFHGVPNIDHTQHFVRKDIIAWLRWLRN 183 (314)
Q Consensus 110 ~V-~NH~~~~~~~~~~~y~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~~p~v~~~l~~~~~~w~~ 183 (314)
+- +.|+..--.. |. .....+. .+.. .......||..+|++.+.+.+.+..++.
T Consensus 92 iD~PGH~~a~~~~----~p-------~l~~~~~----~~~~------~~~~~~~l~~~~~~t~~fl~~l~~e~~~ 145 (303)
T cd02742 92 IDMPGHSTAFVKS----FP-------KLLTECY----AGLK------LRDVFDPLDPTLPKGYDFLDDLFGEIAE 145 (303)
T ss_pred ccchHHHHHHHHh----CH-------HhccCcc----ccCC------CCCCCCccCCCCccHHHHHHHHHHHHHH
Confidence 73 5666542110 10 0000000 0000 0011235888999999999999998885
No 102
>cd06589 GH31 The enzymes of glycosyl hydrolase family 31 (GH31) occur in prokaryotes, eukaryotes, and archaea with a wide range of hydrolytic activities, including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. In most cases, the pyranose moiety recognized in subsite -1 of the substrate binding site is an alpha-D-glucose, though some GH31 family members show a preference for alpha-D-xylose. Several GH31 enzymes can accommodate both glucose and xylose and different levels of discrimination between the two have been observed. Most characterized GH31 enzymes are alpha-glucosidases. In mammals, GH31 members with alpha-glucosidase activity are implicated in at least three distinct biological processes
Probab=91.05 E-value=1.7 Score=39.67 Aligned_cols=93 Identities=11% Similarity=0.145 Sum_probs=63.9
Q ss_pred hHHHHHHhhhHHHHcC--CCEEEeCCCCCCCCCCCCCcccCCCcCC-CCCCHHHHHHHHHHHhhCCCEEEEeeeeccccC
Q 021281 41 WWRNLERKVPDISKSG--FTSVWLPPATHSFAPEGYLPQNLYSLNS-SYGSEHLLKALLHKMKQHKVRAMADIVINHRVG 117 (314)
Q Consensus 41 ~~~gi~~~ldyl~~lG--~~~I~l~Pi~~~~~~~gY~~~d~~~id~-~~Gt~~df~~lv~~ah~~Gi~VilD~V~NH~~~ 117 (314)
+-+.+.+.++.+++.| +++|+|-+-+... |.... +..|+ +|- +.++||+++|++|++|++-+.
T Consensus 22 ~~~~v~~~~~~~~~~~iP~d~~~lD~~~~~~----~~~f~-~~~d~~~Fp---dp~~~i~~l~~~g~~~~~~~~------ 87 (265)
T cd06589 22 DQDKVLEVIDGMRENDIPLDGFVLDDDYTDG----YGDFT-FDWDAGKFP---NPKSMIDELHDNGVKLVLWID------ 87 (265)
T ss_pred CHHHHHHHHHHHHHcCCCccEEEECcccccC----Cceee-eecChhhCC---CHHHHHHHHHHCCCEEEEEeC------
Confidence 5778888888888855 5688886654332 21110 24443 453 467999999999999999431
Q ss_pred CCCCCCCcCcCCCCCCCCCCCCCcccCCCCCccccCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCCCCEEEeccCCC
Q 021281 118 TTQGHGGKYNRYDGIPLSWDEHAVTSCTGGLGNGSTGDNFHGVPNIDHTQHFVRKDIIAWLRWLRNTVGFQDFRFDFARG 197 (314)
Q Consensus 118 ~~~~~~~~y~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~~p~v~~~l~~~~~~w~~~~gvDGfRlDaa~~ 197 (314)
|.|++...+.++..+.+.|||||-+|....
T Consensus 88 --------------------------------------------------P~v~~w~~~~~~~~~~~~Gvdg~w~D~~E~ 117 (265)
T cd06589 88 --------------------------------------------------PYIREWWAEVVKKLLVSLGVDGFWTDMGEP 117 (265)
T ss_pred --------------------------------------------------hhHHHHHHHHHHHhhccCCCCEEeccCCCC
Confidence 223777777777664589999999999753
No 103
>TIGR00217 malQ 4-alpha-glucanotransferase. This enzyme is known as amylomaltase and disproportionating enzyme.
Probab=91.05 E-value=0.79 Score=46.04 Aligned_cols=48 Identities=8% Similarity=-0.077 Sum_probs=37.2
Q ss_pred cCCceeEEEEeeCCCC-CCchHHHHH-HhhhHHHHcCCCEEEeCCCCCCC
Q 021281 22 RNGREILFQGFNWESC-KHDWWRNLE-RKVPDISKSGFTSVWLPPATHSF 69 (314)
Q Consensus 22 ~~~~~~i~q~F~w~~~-~~g~~~gi~-~~ldyl~~lG~~~I~l~Pi~~~~ 69 (314)
+...+|++|+|.=.+. +-|||..+. .-++.+++.|....+|.|+++..
T Consensus 13 ~R~~Gvll~l~SL~s~~GIGDfg~la~~~~d~~~~~g~~~wqllpl~p~~ 62 (513)
T TIGR00217 13 KRKSGILLQLYSLPSEWGIGDLGDGAYKFIDFLKAGSQSVWQIHALYPAD 62 (513)
T ss_pred CCceEEEeccccCCCCCCccChHHHHHHHHHHHHHcCCcEEEeCCCCCCC
Confidence 3456899999985554 347998887 56688899999999999888654
No 104
>cd06569 GH20_Sm-chitobiase-like The chitobiase of Serratia marcescens is a beta-N-1,4-acetylhexosaminidase with a glycosyl hydrolase family 20 (GH20) domain that hydrolyzes the beta-1,4-glycosidic linkages in oligomers derived from chitin. Chitin is degraded by a two step process: i) a chitinase hydrolyzes the chitin to oligosaccharides and disaccharides such as di-N-acetyl-D-glucosamine and chitobiose, ii) chitobiase then further degrades these oligomers into monomers. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=90.58 E-value=0.88 Score=44.90 Aligned_cols=77 Identities=10% Similarity=-0.017 Sum_probs=50.6
Q ss_pred hHHHHHHhhhHHHHcCCCEEEeC-------CC----CC----CCCCCCCCcccCCCcCCCC-------------CCHHHH
Q 021281 41 WWRNLERKVPDISKSGFTSVWLP-------PA----TH----SFAPEGYLPQNLYSLNSSY-------------GSEHLL 92 (314)
Q Consensus 41 ~~~gi~~~ldyl~~lG~~~I~l~-------Pi----~~----~~~~~gY~~~d~~~id~~~-------------Gt~~df 92 (314)
..+.|.+.+|.++..++|.+++- |+ ++ ..++.++...+...+-|.+ =|.+|+
T Consensus 20 ~~~~ik~~Id~ma~~K~N~lHlHLtDdqgwriei~~~P~Lt~~ga~r~~~~~~~~~~~~~~~~~~~~~~~~~g~YT~~di 99 (445)
T cd06569 20 SKETVLKLLDQMAAYKLNKLHLHLTDDEGWRLEIPGLPELTEVGAKRCHDLSETTCLLPQLGSGPDTNNSGSGYYSRADY 99 (445)
T ss_pred CHHHHHHHHHHHHHhCCceEEEEeecCCCcceeccCCchhhhcccccccccccccccccccccCcccCcccCCccCHHHH
Confidence 37888999999999999998772 11 11 1122232222222222222 178999
Q ss_pred HHHHHHHhhCCCEEEEeee-eccccC
Q 021281 93 KALLHKMKQHKVRAMADIV-INHRVG 117 (314)
Q Consensus 93 ~~lv~~ah~~Gi~VilD~V-~NH~~~ 117 (314)
+++|+-|++|||.||-.+- +.|+..
T Consensus 100 ~eiv~yA~~rgI~VIPEID~PGH~~a 125 (445)
T cd06569 100 IEILKYAKARHIEVIPEIDMPGHARA 125 (445)
T ss_pred HHHHHHHHHcCCEEEEccCCchhHHH
Confidence 9999999999999999773 667664
No 105
>PRK14510 putative bifunctional 4-alpha-glucanotransferase/glycogen debranching enzyme; Provisional
Probab=89.76 E-value=0.63 Score=51.53 Aligned_cols=69 Identities=17% Similarity=0.062 Sum_probs=55.8
Q ss_pred CCceeEEEEeeCCCC---CCchHHHHHHhhhHHHHcCCCEEEeCCCCCCC-C----CCCCCcccCCCcCCCCCCHHH
Q 021281 23 NGREILFQGFNWESC---KHDWWRNLERKVPDISKSGFTSVWLPPATHSF-A----PEGYLPQNLYSLNSSYGSEHL 91 (314)
Q Consensus 23 ~~~~~i~q~F~w~~~---~~g~~~gi~~~ldyl~~lG~~~I~l~Pi~~~~-~----~~gY~~~d~~~id~~~Gt~~d 91 (314)
..-+|++|+|.=.+. +-|||..+.+-++.+++.|.+.|+|+|+.... . .+.|.+.+-+.+||-|=+.+.
T Consensus 723 r~~Gv~~~l~sLrs~~~~GiGDf~dl~~~vd~~a~~G~~~~qilPl~~~~~~~p~~~SPYsp~S~~alNplyI~~~~ 799 (1221)
T PRK14510 723 RACGILMHLYSLRSQRPWGIGDFEELYALVDFLAEGGQSLWGVNPLHPLGLGDPERASPYQPSSRRAGNPLLISLDL 799 (1221)
T ss_pred cceEEEEccccCCCCCCCCccCHHHHHHHHHHHHHcCCCEEEECCCCCCCCCCCCCCCCccchhccccChhhcCHhh
Confidence 346799999985542 33799999999999999999999999998755 2 378999998889877766543
No 106
>cd02871 GH18_chitinase_D-like GH18 domain of Chitinase D (ChiD). ChiD, a chitinase found in Bacillus circulans, hydrolyzes the 1,4-beta-linkages of N-acetylglucosamine in chitin and chitodextrins. The domain architecture of ChiD includes a catalytic glycosyl hydrolase family 18 (GH18) domain, a chitin-binding domain, and a fibronectin type III domain. The chitin-binding and fibronectin type III domains are located either N-terminal or C-terminal to the catalytic domain. This family includes exochitinase Chi36 from Bacillus cereus.
Probab=89.35 E-value=2.3 Score=39.83 Aligned_cols=63 Identities=16% Similarity=0.275 Sum_probs=47.5
Q ss_pred CCHHHHHHHHHHHhhCCCEEEEeeeeccccCCCCCCCCcCcCCCCCCCCCCCCCcccCCCCCccccCCCCCCCCCCCCCC
Q 021281 87 GSEHLLKALLHKMKQHKVRAMADIVINHRVGTTQGHGGKYNRYDGIPLSWDEHAVTSCTGGLGNGSTGDNFHGVPNIDHT 166 (314)
Q Consensus 87 Gt~~df~~lv~~ah~~Gi~VilD~V~NH~~~~~~~~~~~y~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~ 166 (314)
.+.+.+++-|++||++|+|||+-+ +... + . ....
T Consensus 57 ~~~~~~~~~i~~~q~~G~KVllSi-----GG~~-----------~-----~-------------------------~~~~ 90 (312)
T cd02871 57 YSPAEFKADIKALQAKGKKVLISI-----GGAN-----------G-----H-------------------------VDLN 90 (312)
T ss_pred CChHHHHHHHHHHHHCCCEEEEEE-----eCCC-----------C-----c-------------------------cccC
Confidence 356789999999999999999854 1100 0 0 0123
Q ss_pred CHHHHHHHHHHHHHHHHhCCCCEEEeccC
Q 021281 167 QHFVRKDIIAWLRWLRNTVGFQDFRFDFA 195 (314)
Q Consensus 167 ~p~v~~~l~~~~~~w~~~~gvDGfRlDaa 195 (314)
++.-|+.+.+.+..+++++|+||+-+|-=
T Consensus 91 ~~~~~~~fa~sl~~~~~~~g~DGiDiD~E 119 (312)
T cd02871 91 HTAQEDNFVDSIVAIIKEYGFDGLDIDLE 119 (312)
T ss_pred CHHHHHHHHHHHHHHHHHhCCCeEEEecc
Confidence 56788889999888888999999999974
No 107
>COG3867 Arabinogalactan endo-1,4-beta-galactosidase [Carbohydrate transport and metabolism]
Probab=88.82 E-value=1.4 Score=40.91 Aligned_cols=56 Identities=16% Similarity=0.205 Sum_probs=34.9
Q ss_pred HHhhhHHHHcCCCEEEe----CCCCCCCCCCCCCcccCCCcCCCCCCHHHHHHHHHHHhhCCCEEEEeee
Q 021281 46 ERKVPDISKSGFTSVWL----PPATHSFAPEGYLPQNLYSLNSSYGSEHLLKALLHKMKQHKVRAMADIV 111 (314)
Q Consensus 46 ~~~ldyl~~lG~~~I~l----~Pi~~~~~~~gY~~~d~~~id~~~Gt~~df~~lv~~ah~~Gi~VilD~V 111 (314)
.+.+.-||..||+.|=| -| .++ ...||.-- .+..+-.-++-++|++.||||++|+-
T Consensus 66 qD~~~iLK~~GvNyvRlRvwndP-~ds-ngn~yggG--------nnD~~k~ieiakRAk~~GmKVl~dFH 125 (403)
T COG3867 66 QDALQILKNHGVNYVRLRVWNDP-YDS-NGNGYGGG--------NNDLKKAIEIAKRAKNLGMKVLLDFH 125 (403)
T ss_pred HHHHHHHHHcCcCeEEEEEecCC-ccC-CCCccCCC--------cchHHHHHHHHHHHHhcCcEEEeecc
Confidence 45788899999999855 44 111 11222111 11233445666788999999999993
No 108
>COG0520 csdA Selenocysteine lyase/Cysteine desulfurase [Posttranslational modification, protein turnover, chaperones]
Probab=88.62 E-value=1.2 Score=43.52 Aligned_cols=90 Identities=14% Similarity=0.169 Sum_probs=62.7
Q ss_pred ccccCccccCCceeEEEEeeCCCCCCchHHHHHHhhhHHHHcCCCEEEeCCCCCCCC----------CCCCCcccCCCcC
Q 021281 14 QTDLGAVIRNGREILFQGFNWESCKHDWWRNLERKVPDISKSGFTSVWLPPATHSFA----------PEGYLPQNLYSLN 83 (314)
Q Consensus 14 ~~~~~~~~~~~~~~i~q~F~w~~~~~g~~~gi~~~ldyl~~lG~~~I~l~Pi~~~~~----------~~gY~~~d~~~id 83 (314)
+..++...++|++||+---+.. ..+......-++.|++..++..- +... +..=-..-+..+.
T Consensus 101 a~~l~~~~~~gdeIv~s~~EH~-------sn~~pw~~~~~~~Ga~v~~i~~~-~~g~~~~~~~~~~i~~~Tklvais~vS 172 (405)
T COG0520 101 ARGLGRSLKPGDEIVVSDLEHH-------SNIVPWQELAKRTGAKVRVIPLD-DDGLLDLDALEKLITPKTKLVALSHVS 172 (405)
T ss_pred HHHhhhhhcCCCEEEEccCcch-------hhHHHHHHHHHhcCcEEEEEecC-CCCCcCHHHHHHhcCCCceEEEEECcc
Confidence 3445555788889999888866 44455555556679988887654 3321 1111122244556
Q ss_pred CCCCCHHHHHHHHHHHhhCCCEEEEeee
Q 021281 84 SSYGSEHLLKALLHKMKQHKVRAMADIV 111 (314)
Q Consensus 84 ~~~Gt~~df~~lv~~ah~~Gi~VilD~V 111 (314)
...|+..+++++++.||++|..|++|.+
T Consensus 173 n~tG~~~pv~~I~~la~~~ga~v~VDaa 200 (405)
T COG0520 173 NVTGTVNPVKEIAELAHEHGALVLVDAA 200 (405)
T ss_pred ccccccchHHHHHHHHHHcCCEEEEECc
Confidence 7789999999999999999999999987
No 109
>PF07555 NAGidase: beta-N-acetylglucosaminidase ; InterPro: IPR011496 This family consists of both eukaryotic and prokaryotic hyaluronidases. Human Q9HAR0 from SWISSPROT is expressed during meningioma []. Clostridium perfringens, P26831 from SWISSPROT, is involved in pathogenesis and is likely to act on connectivity tissue during gas gangrene []. It catalyses the random hydrolysis of 1->4-linkages between N-acetyl-beta-D-glucosamine and D-glucuronate residues in hyaluronate.; PDB: 2WB5_B 2V5C_B 2VUR_A 2V5D_A 2YDS_A 2CBI_A 2XPK_A 2CBJ_B 2J62_A 2X0Y_A ....
Probab=88.60 E-value=3.6 Score=38.52 Aligned_cols=109 Identities=16% Similarity=0.121 Sum_probs=63.9
Q ss_pred EEEEee---CCCCCCchHHHHHHhhhHHHHcCCCEEEeCCCCCCCCCCCCCcccCCCcCCCCCCHHHHHHHHHHHhhCCC
Q 021281 28 LFQGFN---WESCKHDWWRNLERKVPDISKSGFTSVWLPPATHSFAPEGYLPQNLYSLNSSYGSEHLLKALLHKMKQHKV 104 (314)
Q Consensus 28 i~q~F~---w~~~~~g~~~gi~~~ldyl~~lG~~~I~l~Pi~~~~~~~gY~~~d~~~id~~~Gt~~df~~lv~~ah~~Gi 104 (314)
++++|+ |+ ++.=.+.+..+++.|.|+=.-.| +...+|.-.-.+.|--+ ..++|++|+++|++.|+
T Consensus 3 vIEGFYG~PWs------~e~R~~l~~f~~~~kmN~YiYAP--KdDpyhr~~Wre~Yp~~----el~~l~~L~~~a~~~~V 70 (306)
T PF07555_consen 3 VIEGFYGRPWS------HEDRLDLIRFLGRYKMNTYIYAP--KDDPYHRSKWREPYPEE----ELAELKELADAAKANGV 70 (306)
T ss_dssp EEE-SSSS---------HHHHHHHHHHHHHTT--EEEE----TT-TTTTTTTTS---HH----HHHHHHHHHHHHHHTT-
T ss_pred ceeCcCCCCCC------HHHHHHHHHHHHHcCCceEEECC--CCChHHHhhhcccCCHH----HHHHHHHHHHHHHHcCC
Confidence 567777 55 88888999999999999876555 12223332222222211 35789999999999999
Q ss_pred EEEEeeeeccccCCCCCCCCcCcCCCCCCCCCCCCCcccCCCCCccccCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHh
Q 021281 105 RAMADIVINHRVGTTQGHGGKYNRYDGIPLSWDEHAVTSCTGGLGNGSTGDNFHGVPNIDHTQHFVRKDIIAWLRWLRNT 184 (314)
Q Consensus 105 ~VilD~V~NH~~~~~~~~~~~y~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~~p~v~~~l~~~~~~w~~~ 184 (314)
+.+.=+- |+ .++.+++++..+.|++-+..+. +
T Consensus 71 ~Fv~ais----------------Pg-------------------------------~~~~~s~~~d~~~L~~K~~ql~-~ 102 (306)
T PF07555_consen 71 DFVYAIS----------------PG-------------------------------LDICYSSEEDFEALKAKFDQLY-D 102 (306)
T ss_dssp EEEEEEB----------------GT-------------------------------TT--TSHHHHHHHHHHHHHHHH-C
T ss_pred EEEEEEC----------------cc-------------------------------cccccCcHHHHHHHHHHHHHHH-h
Confidence 9887331 11 1122335788888888888888 9
Q ss_pred CCCCEEEe--ccCC
Q 021281 185 VGFQDFRF--DFAR 196 (314)
Q Consensus 185 ~gvDGfRl--Daa~ 196 (314)
.||+-|-+ |-+.
T Consensus 103 lGvr~FailfDDi~ 116 (306)
T PF07555_consen 103 LGVRSFAILFDDID 116 (306)
T ss_dssp TT--EEEEE-TS-S
T ss_pred cCCCEEEEeecCCC
Confidence 99998765 4444
No 110
>PF13204 DUF4038: Protein of unknown function (DUF4038); PDB: 3KZS_D.
Probab=88.49 E-value=1.4 Score=40.93 Aligned_cols=70 Identities=16% Similarity=0.171 Sum_probs=39.1
Q ss_pred hHHHHHHhhhHHHHcCCCEEEeCCCCCCC-----CCCCCCc--------ccCCCcCCCCCCHHHHHHHHHHHhhCCCEEE
Q 021281 41 WWRNLERKVPDISKSGFTSVWLPPATHSF-----APEGYLP--------QNLYSLNSSYGSEHLLKALLHKMKQHKVRAM 107 (314)
Q Consensus 41 ~~~gi~~~ldyl~~lG~~~I~l~Pi~~~~-----~~~gY~~--------~d~~~id~~~Gt~~df~~lv~~ah~~Gi~Vi 107 (314)
+.+..+.-|+.+++-|||.|++.=+-+.. ...|+.+ .|+.+++|.| -+.+.++|+.|.++||.+.
T Consensus 28 ~~~e~~~yL~~r~~qgFN~iq~~~l~~~~~~~~~n~~~~~~~~~~~~~~~d~~~~N~~Y--F~~~d~~i~~a~~~Gi~~~ 105 (289)
T PF13204_consen 28 TREEWEQYLDTRKEQGFNVIQMNVLPQWDGYNTPNRYGFAPFPDEDPGQFDFTRPNPAY--FDHLDRRIEKANELGIEAA 105 (289)
T ss_dssp -HHHHHHHHHHHHHTT--EEEEES-SSSS-B----TTS-BS-SSTT------TT----H--HHHHHHHHHHHHHTT-EEE
T ss_pred CHHHHHHHHHHHHHCCCCEEEEEeCCCcccccccccCCCcCCCCCCccccCCCCCCHHH--HHHHHHHHHHHHHCCCeEE
Confidence 34556667899999999999884433221 1123333 3566677666 4788999999999999985
Q ss_pred Eeeeecc
Q 021281 108 ADIVINH 114 (314)
Q Consensus 108 lD~V~NH 114 (314)
+|+=|
T Consensus 106 --lv~~w 110 (289)
T PF13204_consen 106 --LVPFW 110 (289)
T ss_dssp --EESS-
T ss_pred --EEEEE
Confidence 55544
No 111
>PF01301 Glyco_hydro_35: Glycosyl hydrolases family 35; InterPro: IPR001944 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 35 GH35 from CAZY comprises enzymes with only one known activity; beta-galactosidase (3.2.1.23 from EC). Mammalian beta-galactosidase is a lysosomal enzyme (gene GLB1) which cleaves the terminal galactose from gangliosides, glycoproteins, and glycosaminoglycans and whose deficiency is the cause of the genetic disease Gm(1) gangliosidosis (Morquio disease type B).; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3OGS_A 3OGV_A 3OGR_A 3OG2_A 1TG7_A 1XC6_A 3THC_C 3THD_D 3D3A_A 4E8D_B ....
Probab=88.11 E-value=0.56 Score=44.17 Aligned_cols=66 Identities=12% Similarity=0.230 Sum_probs=37.0
Q ss_pred eeCCCCCCchHHHHHHhhhHHHHcCCCEEEeCCCCCCC-CCCCCCcccCCCcCCCCCCHHHHHHHHHHHhhCCCEEEEee
Q 021281 32 FNWESCKHDWWRNLERKVPDISKSGFTSVWLPPATHSF-APEGYLPQNLYSLNSSYGSEHLLKALLHKMKQHKVRAMADI 110 (314)
Q Consensus 32 F~w~~~~~g~~~gi~~~ldyl~~lG~~~I~l~Pi~~~~-~~~gY~~~d~~~id~~~Gt~~df~~lv~~ah~~Gi~VilD~ 110 (314)
..+.++.. .|. +.|..+|++|+|+|.+-=+...- ...| ..||. ...||+++++.|+++||.|||-.
T Consensus 17 hy~r~p~~-~W~---~~l~k~ka~G~n~v~~yv~W~~he~~~g--~~df~-------g~~dl~~f~~~a~~~gl~vilrp 83 (319)
T PF01301_consen 17 HYFRIPPE-YWR---DRLQKMKAAGLNTVSTYVPWNLHEPEEG--QFDFT-------GNRDLDRFLDLAQENGLYVILRP 83 (319)
T ss_dssp -GGGS-GG-GHH---HHHHHHHHTT-SEEEEE--HHHHSSBTT--B---S-------GGG-HHHHHHHHHHTT-EEEEEE
T ss_pred ccccCChh-HHH---HHHHHHHhCCcceEEEeccccccCCCCC--ccccc-------chhhHHHHHHHHHHcCcEEEecc
Confidence 44555533 344 66777899999999864222110 0112 23331 23789999999999999999954
No 112
>cd06568 GH20_SpHex_like A subgroup of the Glycosyl hydrolase family 20 (GH20) catalytic domain found in proteins similar to the N-acetylhexosaminidase from Streptomyces plicatus (SpHex). SpHex catalyzes the hydrolysis of N-acetyl-beta-hexosaminides. An Asp residue within the active site plays a critical role in substrate-assisted catalysis by orienting the 2-acetamido group and stabilizing the transition state. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself. Proteins belonging to this subgroup lack the C-terminal PKD (polycystic kidney disease I)-like domain found in the chitobiases.
Probab=87.89 E-value=1.9 Score=40.80 Aligned_cols=124 Identities=10% Similarity=0.029 Sum_probs=71.5
Q ss_pred hHHHHHHhhhHHHHcCCCEEEeCCCCCCCCCCCCCcccCCCcC------------CCCCCHHHHHHHHHHHhhCCCEEEE
Q 021281 41 WWRNLERKVPDISKSGFTSVWLPPATHSFAPEGYLPQNLYSLN------------SSYGSEHLLKALLHKMKQHKVRAMA 108 (314)
Q Consensus 41 ~~~gi~~~ldyl~~lG~~~I~l~Pi~~~~~~~gY~~~d~~~id------------~~~Gt~~df~~lv~~ah~~Gi~Vil 108 (314)
..+.|.+.+|.++..++|.+++--. +. .+.......|-.+. ..+=|.+|+++||+-|.+|||.||-
T Consensus 16 ~~~~lk~~id~ma~~KlN~lhlHLt-D~-~~~rle~~~~P~lt~~ga~~~~~~~~~~~YT~~di~elv~yA~~rgI~vIP 93 (329)
T cd06568 16 TVAEVKRYIDLLALYKLNVLHLHLT-DD-QGWRIEIKSWPKLTEIGGSTEVGGGPGGYYTQEDYKDIVAYAAERHITVVP 93 (329)
T ss_pred CHHHHHHHHHHHHHhCCcEEEEEee-cC-CcceeeecCcccccccccccccCCCCCCcCCHHHHHHHHHHHHHcCCEEEE
Confidence 4788999999999999999987321 00 00111111111110 1122799999999999999999999
Q ss_pred eee-eccccCCCCCCCCcCcCCCCCCCCCCCCCcccCCCCCccccCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHh
Q 021281 109 DIV-INHRVGTTQGHGGKYNRYDGIPLSWDEHAVTSCTGGLGNGSTGDNFHGVPNIDHTQHFVRKDIIAWLRWLRNT 184 (314)
Q Consensus 109 D~V-~NH~~~~~~~~~~~y~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~~p~v~~~l~~~~~~w~~~ 184 (314)
.+- +.|+..--. .|..... ....... .. +.-.....||..+|++.+.+.+++..+++-
T Consensus 94 EiD~PGH~~a~~~----~~p~l~~--~~~~~~~-----------~~-~~~~~~~~l~~~~~~t~~fl~~v~~E~~~~ 152 (329)
T cd06568 94 EIDMPGHTNAALA----AYPELNC--DGKAKPL-----------YT-GIEVGFSSLDVDKPTTYEFVDDVFRELAAL 152 (329)
T ss_pred ecCCcHHHHHHHH----hChhhcc--CCCCCcc-----------cc-ccCCCCcccCCCCHHHHHHHHHHHHHHHHh
Confidence 774 455543111 0111100 0000000 00 001112458999999999999999988853
No 113
>cd06563 GH20_chitobiase-like The chitobiase of Serratia marcescens is a beta-N-1,4-acetylhexosaminidase with a glycosyl hydrolase family 20 (GH20) domain that hydrolyzes the beta-1,4-glycosidic linkages in oligomers derived from chitin. Chitin is degraded by a two step process: i) a chitinase hydrolyzes the chitin to oligosaccharides and disaccharides such as di-N-acetyl-D-glucosamine and chitobiose, ii) chitobiase then further degrades these oligomers into monomers. This GH20 domain family includes an N-acetylglucosamidase (GlcNAcase A) from Pseudoalteromonas piscicida and an N-acetylhexosaminidase (SpHex) from Streptomyces plicatus. SpHex lacks the C-terminal PKD (polycystic kidney disease I)-like domain found in the chitobiases. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=86.93 E-value=7 Score=37.35 Aligned_cols=124 Identities=6% Similarity=-0.094 Sum_probs=69.4
Q ss_pred HHHHHHhhhHHHHcCCCEEEeC-----------CCCCC----CCCCCCCcc----cCCCcCC--CCCCHHHHHHHHHHHh
Q 021281 42 WRNLERKVPDISKSGFTSVWLP-----------PATHS----FAPEGYLPQ----NLYSLNS--SYGSEHLLKALLHKMK 100 (314)
Q Consensus 42 ~~gi~~~ldyl~~lG~~~I~l~-----------Pi~~~----~~~~gY~~~----d~~~id~--~~Gt~~df~~lv~~ah 100 (314)
.+.|.+.++.++..++|.+++- |-++. ++..+.... ......+ .+=|.+|++++|+-|+
T Consensus 17 ~~~ik~~Id~ma~~K~N~lhlHltDdq~~rle~~~~P~Lt~~ga~~~~~~~~~~~~~~~~~~~~~~YT~~di~eiv~yA~ 96 (357)
T cd06563 17 VDEVKRFIDLMALYKLNVFHWHLTDDQGWRIEIKKYPKLTEVGAWRGPTEIGLPQGGGDGTPYGGFYTQEEIREIVAYAA 96 (357)
T ss_pred HHHHHHHHHHHHHhccceEEEeeecCCCceecccCcchhhhcccccCcccccccccccCCCccCceECHHHHHHHHHHHH
Confidence 6788889999999999999872 11111 011111110 0001111 1127899999999999
Q ss_pred hCCCEEEEeee-eccccCCCCCCCCcCcCCCCCCCCCCCCCcccCCCCCccccCCCCCCCCCCCCCCCHHHHHHHHHHHH
Q 021281 101 QHKVRAMADIV-INHRVGTTQGHGGKYNRYDGIPLSWDEHAVTSCTGGLGNGSTGDNFHGVPNIDHTQHFVRKDIIAWLR 179 (314)
Q Consensus 101 ~~Gi~VilD~V-~NH~~~~~~~~~~~y~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~~p~v~~~l~~~~~ 179 (314)
++||+||-.+- +.|+..--. .|........... ...........||..+|++.+.+.+++.
T Consensus 97 ~rgI~VIPEID~PGH~~a~l~----~~pel~~~~~~~~--------------~~~~~~~~~~~L~~~~~~t~~f~~~ll~ 158 (357)
T cd06563 97 ERGITVIPEIDMPGHALAALA----AYPELGCTGGPGS--------------VVSVQGVVSNVLCPGKPETYTFLEDVLD 158 (357)
T ss_pred HcCCEEEEecCCchhHHHHHH----hCccccCCCCCCc--------------cccccCcCCCccCCCChhHHHHHHHHHH
Confidence 99999999763 555543111 0100000000000 0000011123478899999999999988
Q ss_pred HHHH
Q 021281 180 WLRN 183 (314)
Q Consensus 180 ~w~~ 183 (314)
.++.
T Consensus 159 E~~~ 162 (357)
T cd06563 159 EVAE 162 (357)
T ss_pred HHHH
Confidence 8875
No 114
>PF00728 Glyco_hydro_20: Glycosyl hydrolase family 20, catalytic domain; InterPro: IPR015883 Glycoside hydrolase family 20 GH20 from CAZY comprises enzymes with several known activities; beta-hexosaminidase (3.2.1.52 from EC); lacto-N-biosidase (3.2.1.140 from EC). Carbonyl oxygen of the C-2 acetamido group of the substrate acts as the catalytic nucleophile/base in this family of enzymes. In the brain and other tissues, beta-hexosaminidase A degrades GM2 gangliosides; specifically, the enzyme hydrolyses terminal non-reducing N-acetyl-D-hexosamine residues in N-acetyl-beta-D-hexosaminides. There are 3 forms of beta-hexosaminidase: hexosaminidase A is a trimer, with one alpha, one beta-A and one beta-B chain; hexosaminidase B is a tetramer of two beta-A and two beta-B chains; and hexosaminidase S is a homodimer of alpha chains. The two beta chains are derived from the cleavage of a precursor. Mutations in the beta-chain lead to Sandhoff disease, a lysosomal storage disorder characterised by accumulation of GM2 ganglioside [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds; PDB: 3RPM_A 1C7T_A 1QBA_A 1QBB_A 1C7S_A 3RCN_A 2YL8_A 2YL6_A 2YLL_A 2YL5_C ....
Probab=86.67 E-value=0.9 Score=42.89 Aligned_cols=134 Identities=12% Similarity=0.159 Sum_probs=71.7
Q ss_pred hHHHHHHhhhHHHHcCCCEEEeCCCCC------CC-----CCCC-CCcccCCCcCCCCCCHHHHHHHHHHHhhCCCEEEE
Q 021281 41 WWRNLERKVPDISKSGFTSVWLPPATH------SF-----APEG-YLPQNLYSLNSSYGSEHLLKALLHKMKQHKVRAMA 108 (314)
Q Consensus 41 ~~~gi~~~ldyl~~lG~~~I~l~Pi~~------~~-----~~~g-Y~~~d~~~id~~~Gt~~df~~lv~~ah~~Gi~Vil 108 (314)
..+.|.+.++.++..++|.++|---=. .. ...| |.... . +. +=|.+|+++||+.|+++||+||.
T Consensus 16 ~~~~ik~~id~ma~~k~N~lhlhl~D~~~~~~~~~~~p~l~~~ga~~~~~--~-~~-~yT~~di~~lv~yA~~~gI~VIP 91 (351)
T PF00728_consen 16 SVDTIKRLIDQMAYYKLNVLHLHLSDDQGFRLESKSYPELTEKGAYRPSD--A-GG-YYTKEDIRELVAYAKERGIEVIP 91 (351)
T ss_dssp -HHHHHHHHHHHHHTT-SEEEEEEESSTCB-BEBSTSTHHHHTTTESTTC--T-ES-EBEHHHHHHHHHHHHHTT-EEEE
T ss_pred CHHHHHHHHHHHHHcCCcEEEEEEecCCCCccccCCCccccccCcccccc--c-cc-cCCHHHHHHHHHHHHHcCCceee
Confidence 478899999999999999998721100 00 0011 11111 0 11 23789999999999999999999
Q ss_pred eee-eccccCCCCCCCCcCcCCCCCCCCCCCCCcccCCCCCccccCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCCC
Q 021281 109 DIV-INHRVGTTQGHGGKYNRYDGIPLSWDEHAVTSCTGGLGNGSTGDNFHGVPNIDHTQHFVRKDIIAWLRWLRNTVGF 187 (314)
Q Consensus 109 D~V-~NH~~~~~~~~~~~y~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~~p~v~~~l~~~~~~w~~~~gv 187 (314)
.+- +.|++.-.. .|..+.. ..+... ... ....+.......||..+|++.+.+.+.+..++.-+.-
T Consensus 92 eid~PGH~~~~l~----~~p~~~~--~~~~~~------~~~--~~~~~~~~~~~~l~~~~~~t~~~~~~l~~e~~~~f~~ 157 (351)
T PF00728_consen 92 EIDTPGHAEAWLK----AYPELGC--SAWPED------KSW--PNSTCWYPDNGVLDPSNPETYEFLKDLLDEVADLFPS 157 (351)
T ss_dssp EEEESSS-HHHHH----HHHHHCC--CHTTCS------SSC--EEEETTSEEEEEE-TTSHHHHHHHHHHHHHHHHHHTS
T ss_pred eccCchHHHHHHH----hCchhhc--cccccc------ccc--ccccccCCCcccCCCCcHHHHHHHHHHHHHHHhhCCC
Confidence 873 566664211 0100000 000000 000 0000000111248899999999999999988865554
Q ss_pred CEEEe
Q 021281 188 QDFRF 192 (314)
Q Consensus 188 DGfRl 192 (314)
.-|-+
T Consensus 158 ~~iHi 162 (351)
T PF00728_consen 158 KYIHI 162 (351)
T ss_dssp SEEEE
T ss_pred CeEEe
Confidence 44433
No 115
>cd06570 GH20_chitobiase-like_1 A functionally uncharacterized subgroup of the Glycosyl hydrolase family 20 (GH20) catalytic domain found in proteins similar to the chitobiase of Serratia marcescens, a beta-N-1,4-acetylhexosaminidase that hydrolyzes the beta-1,4-glycosidic linkages in oligomers derived from chitin. Chitin is degraded by a two step process: i) a chitinase hydrolyzes the chitin to oligosaccharides and disaccharides such as di-N-acetyl-D-glucosamine and chitobiose, ii) chitobiase then further degrades these oligomers into monomers. This subgroup lacks the C-terminal PKD (polycystic kidney disease I)-like domain found in the chitobiases. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=86.59 E-value=3.1 Score=39.07 Aligned_cols=123 Identities=11% Similarity=0.089 Sum_probs=70.1
Q ss_pred hHHHHHHhhhHHHHcCCCEEEeCCCCCCCCCCCCCcccCCCc---C--CCCCCHHHHHHHHHHHhhCCCEEEEeee-ecc
Q 021281 41 WWRNLERKVPDISKSGFTSVWLPPATHSFAPEGYLPQNLYSL---N--SSYGSEHLLKALLHKMKQHKVRAMADIV-INH 114 (314)
Q Consensus 41 ~~~gi~~~ldyl~~lG~~~I~l~Pi~~~~~~~gY~~~d~~~i---d--~~~Gt~~df~~lv~~ah~~Gi~VilD~V-~NH 114 (314)
..+.|.+.|+.++..++|.+++-=. +. .+..+....|-.+ . ..+=|.+|++++|+-|.++||.||-.+- +.|
T Consensus 16 ~~~~ik~~Id~ma~~KlN~lh~Hlt-Dd-~~~rle~~~~P~lt~~g~~~~~yT~~di~elv~yA~~rgI~vIPEId~PGH 93 (311)
T cd06570 16 PVAVIKRQLDAMASVKLNVFHWHLT-DD-QGFRIESKKYPKLQQKASDGLYYTQEQIREVVAYARDRGIRVVPEIDVPGH 93 (311)
T ss_pred CHHHHHHHHHHHHHhCCeEEEEEEe-cC-CCceeecCCCccccccCCCCCccCHHHHHHHHHHHHHcCCEEEEeecCccc
Confidence 3788999999999999998876200 00 0011111111111 1 1122899999999999999999999773 566
Q ss_pred ccCCCCCCCCcCcCCCCCCCCCCCCCcccCCCCCccccCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHH
Q 021281 115 RVGTTQGHGGKYNRYDGIPLSWDEHAVTSCTGGLGNGSTGDNFHGVPNIDHTQHFVRKDIIAWLRWLRN 183 (314)
Q Consensus 115 ~~~~~~~~~~~y~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~~p~v~~~l~~~~~~w~~ 183 (314)
+..--. .|........... ....++ ..-+.||..+|++.+.+.+++..++.
T Consensus 94 ~~a~~~----~ypel~~~~~~~~------~~~~~~--------~~~~~l~~~~p~t~~f~~~l~~E~~~ 144 (311)
T cd06570 94 ASAIAV----AYPELASGPGPYV------IERGWG--------VFEPLLDPTNEETYTFLDNLFGEMAE 144 (311)
T ss_pred hHHHHH----hCHHhccCCCccc------cccccc--------cCCCccCCCChhHHHHHHHHHHHHHH
Confidence 653111 1110100000000 000000 01235899999999999999888874
No 116
>TIGR03849 arch_ComA phosphosulfolactate synthase. This model finds the ComA (Coenzyme M biosynthesis A) protein, phosphosulfolactate synthase, in methanogenic archaea. The ComABC pathway is one of at least two pathways to the intermediate sulfopyruvate. Coenzyme M occurs rarely and sporadically outside of the archaea, as for expoxide metabolism in Xanthobacter autotrophicus Py2, but candidate phosphosulfolactate synthases from that and other species occur fall below the cutoff and outside the scope of this model. This model deliberately is narrower in scope than pfam02679.
Probab=86.23 E-value=2.3 Score=38.22 Aligned_cols=49 Identities=14% Similarity=0.293 Sum_probs=38.0
Q ss_pred HHHHhhhHHHHcCCCEEEeCCCCCCCCCCCCCcccCCCcCCCCCCHHHHHHHHHHHhhCCCEEEEee
Q 021281 44 NLERKVPDISKSGFTSVWLPPATHSFAPEGYLPQNLYSLNSSYGSEHLLKALLHKMKQHKVRAMADI 110 (314)
Q Consensus 44 gi~~~ldyl~~lG~~~I~l~Pi~~~~~~~gY~~~d~~~id~~~Gt~~df~~lv~~ah~~Gi~VilD~ 110 (314)
.+.+-+++.+++||++|.|+- |. ..+ +.++..++|+.++++|++|+-.+
T Consensus 72 ~~~~Yl~~~k~lGf~~IEiS~--------G~-----~~i-----~~~~~~rlI~~~~~~g~~v~~Ev 120 (237)
T TIGR03849 72 KFDEYLNECDELGFEAVEISD--------GS-----MEI-----SLEERCNLIERAKDNGFMVLSEV 120 (237)
T ss_pred hHHHHHHHHHHcCCCEEEEcC--------Cc-----cCC-----CHHHHHHHHHHHHhCCCeEeccc
Confidence 345556699999999999873 42 223 36889999999999999999654
No 117
>PRK15447 putative protease; Provisional
Probab=85.54 E-value=1.9 Score=40.19 Aligned_cols=58 Identities=10% Similarity=0.060 Sum_probs=41.6
Q ss_pred EeeCCCCCCchHHHHHHhhhHHHHcCCCEEEeCCCCCCCCCCCCCcccCCCcCCCCCCHHHHHHHHHHHhhCCCEEEE
Q 021281 31 GFNWESCKHDWWRNLERKVPDISKSGFTSVWLPPATHSFAPEGYLPQNLYSLNSSYGSEHLLKALLHKMKQHKVRAMA 108 (314)
Q Consensus 31 ~F~w~~~~~g~~~gi~~~ldyl~~lG~~~I~l~Pi~~~~~~~gY~~~d~~~id~~~Gt~~df~~lv~~ah~~Gi~Vil 108 (314)
.|.|. =..++.-...|++.|+++||+.-..-+.. . .| +.+++++.|+.||++|.+|++
T Consensus 9 ~~~~p------~~~~~~~~~~~~~~gaDaVY~g~~~~~~R-~------------~f-~~~~l~e~v~~~~~~gkkvyv 66 (301)
T PRK15447 9 LYYWP------KETVRDFYQRAADSPVDIVYLGETVCSKR-R------------EL-KVGDWLELAERLAAAGKEVVL 66 (301)
T ss_pred ccCCC------CCCHHHHHHHHHcCCCCEEEECCccCCCc-c------------CC-CHHHHHHHHHHHHHcCCEEEE
Confidence 36676 33445556678899999999973211110 0 12 679999999999999999998
No 118
>PF02679 ComA: (2R)-phospho-3-sulfolactate synthase (ComA); InterPro: IPR003830 Methanogenic archaea produce methane via the anaerobic reduction of acetate or single carbon compounds []. Coenzyme M (CoM; 2-mercaptoethanesulphonic acid) serves as the terminal methyl carrier for this process. Previously thought to be unique to methanogenic archaea, CoM has also been found in methylotrophic bacteria. Biosynthesis of CoM begins with the Michael addition of sulphite to phosphoenolpyruvate, forming 2-phospho-3-sulpholactate (PSL). This reaction is catalyzed by members of this family, PSL synthase (ComA) []. Subsequently, PSL is dephosphorylated by phosphosulpholactate phosphatase (ComB) to form 3-sulpholactate [], which is then converted to 3-sulphopyruvate by L-sulpholactate dehydrogenase (ComC; 1.1.1.272 from EC) []. Sulphopyruvate decarboxylase (ComDE; 4.1.1.79 from EC) converts 3-sulphopyruvate to sulphoacetaldehyde []. Reductive thiolation of sulphoacetaldehyde is the final step.; GO: 0019295 coenzyme M biosynthetic process; PDB: 1U83_A 1QWG_A.
Probab=85.23 E-value=2.4 Score=38.38 Aligned_cols=50 Identities=16% Similarity=0.399 Sum_probs=37.0
Q ss_pred HHHHHhhhHHHHcCCCEEEeCCCCCCCCCCCCCcccCCCcCCCCCCHHHHHHHHHHHhhCCCEEEEee
Q 021281 43 RNLERKVPDISKSGFTSVWLPPATHSFAPEGYLPQNLYSLNSSYGSEHLLKALLHKMKQHKVRAMADI 110 (314)
Q Consensus 43 ~gi~~~ldyl~~lG~~~I~l~Pi~~~~~~~gY~~~d~~~id~~~Gt~~df~~lv~~ah~~Gi~VilD~ 110 (314)
..+.+-+++++++||++|.++ .|.- .+ +.++..++|+.++++|++|+-.+
T Consensus 84 ~~~~~yl~~~k~lGf~~IEiS--------dGti-----~l-----~~~~r~~~I~~~~~~Gf~v~~Ev 133 (244)
T PF02679_consen 84 GKFDEYLEECKELGFDAIEIS--------DGTI-----DL-----PEEERLRLIRKAKEEGFKVLSEV 133 (244)
T ss_dssp T-HHHHHHHHHHCT-SEEEE----------SSS-------------HHHHHHHHHHHCCTTSEEEEEE
T ss_pred ChHHHHHHHHHHcCCCEEEec--------CCce-----eC-----CHHHHHHHHHHHHHCCCEEeecc
Confidence 356778899999999999987 3432 22 36889999999999999999866
No 119
>PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A.
Probab=84.79 E-value=1.8 Score=34.37 Aligned_cols=43 Identities=19% Similarity=0.394 Sum_probs=32.5
Q ss_pred HHHHHHhhhHHHHcCCCEEEeCCCCCCCCCCCCCcccCCCcCCCCCCHHHHHHHHHHHhhCCCEEEE
Q 021281 42 WRNLERKVPDISKSGFTSVWLPPATHSFAPEGYLPQNLYSLNSSYGSEHLLKALLHKMKQHKVRAMA 108 (314)
Q Consensus 42 ~~gi~~~ldyl~~lG~~~I~l~Pi~~~~~~~gY~~~d~~~id~~~Gt~~df~~lv~~ah~~Gi~Vil 108 (314)
=+.+.+.++.+.++|+..||+.|= +.-+++++.|++.||+|+-
T Consensus 65 ~~~~~~~v~~~~~~g~~~v~~~~g------------------------~~~~~~~~~a~~~gi~vig 107 (116)
T PF13380_consen 65 PDKVPEIVDEAAALGVKAVWLQPG------------------------AESEELIEAAREAGIRVIG 107 (116)
T ss_dssp HHHHHHHHHHHHHHT-SEEEE-TT------------------------S--HHHHHHHHHTT-EEEE
T ss_pred HHHHHHHHHHHHHcCCCEEEEEcc------------------------hHHHHHHHHHHHcCCEEEe
Confidence 467888999999999999999873 4456888999999999874
No 120
>COG2730 BglC Endoglucanase [Carbohydrate transport and metabolism]
Probab=83.69 E-value=2.1 Score=41.69 Aligned_cols=59 Identities=20% Similarity=0.303 Sum_probs=40.4
Q ss_pred HHHHhhhHHHHcCCCEEEeCCCCCCCCCCCCCcccCCC-cCCCCC---CHHHHHHHHHHHhhCCCEEEEee
Q 021281 44 NLERKVPDISKSGFTSVWLPPATHSFAPEGYLPQNLYS-LNSSYG---SEHLLKALLHKMKQHKVRAMADI 110 (314)
Q Consensus 44 gi~~~ldyl~~lG~~~I~l~Pi~~~~~~~gY~~~d~~~-id~~~G---t~~df~~lv~~ah~~Gi~VilD~ 110 (314)
-.++-+.++++.||++|=|+ + +|+..-.+. .+|.+= ...-+.+.|+.|.++||+|++|+
T Consensus 74 ~~~~~~~~ik~~G~n~VRiP-i-------~~~~~~~~~~~~p~~~~~~~~~~ld~~I~~a~~~gi~V~iD~ 136 (407)
T COG2730 74 ITEEDFDQIKSAGFNAVRIP-I-------GYWALQATDGDNPYLIGLTQLKILDEAINWAKKLGIYVLIDL 136 (407)
T ss_pred hhhhHHHHHHHcCCcEEEcc-c-------chhhhhccCCCCCCeecchHHHHHHHHHHHHHhcCeeEEEEe
Confidence 45788899999999999874 3 222210111 444443 22356777999999999999997
No 121
>COG2342 Predicted extracellular endo alpha-1,4 polygalactosaminidase or related polysaccharide hydrolase [Carbohydrate transport and metabolism]
Probab=83.50 E-value=16 Score=33.75 Aligned_cols=122 Identities=15% Similarity=0.140 Sum_probs=77.8
Q ss_pred HHHHHHhhhHHHHcCCCEEEeCCCCCCCCCCCCCcccCCCcCCCCCCHHHHHHHHHHHhhCCCEEEEeeeeccccCCCC-
Q 021281 42 WRNLERKVPDISKSGFTSVWLPPATHSFAPEGYLPQNLYSLNSSYGSEHLLKALLHKMKQHKVRAMADIVINHRVGTTQ- 120 (314)
Q Consensus 42 ~~gi~~~ldyl~~lG~~~I~l~Pi~~~~~~~gY~~~d~~~id~~~Gt~~df~~lv~~ah~~Gi~VilD~V~NH~~~~~~- 120 (314)
|+-+...+..|.+.+++.|.+=|-...+ +.+=.+.+++|.+ .+.|.++|.=+-+.....-..
T Consensus 29 ~ql~d~~~~~i~~~~f~llVVDps~~g~-------------~~~~~~~eelr~~----~~gg~~pIAYlsIg~ae~yR~Y 91 (300)
T COG2342 29 YQLQDAYINEILNSPFDLLVVDPSYCGP-------------FNTPWTIEELRTK----ADGGVKPIAYLSIGEAESYRFY 91 (300)
T ss_pred hhcccchHHHHhcCCCcEEEEeccccCC-------------CCCcCcHHHHHHH----hcCCeeEEEEEechhhhhhhhH
Confidence 7778888999999999999887732111 1122356777754 567788888777765443221
Q ss_pred CCCCcCcCCCCCCCCCCCCCcccCCCCCccccCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCCCCEEEeccCCCC
Q 021281 121 GHGGKYNRYDGIPLSWDEHAVTSCTGGLGNGSTGDNFHGVPNIDHTQHFVRKDIIAWLRWLRNTVGFQDFRFDFARGY 198 (314)
Q Consensus 121 ~~~~~y~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~~p~v~~~l~~~~~~w~~~~gvDGfRlDaa~~i 198 (314)
|.+.|.. + ..+|--. ....|.+--...|+.|+=++.+.+.++.++ +.|+||.-+|.+...
T Consensus 92 wd~~w~~---~-~p~wLg~-------------edP~W~Gny~VkYW~~eWkdii~~~l~rL~-d~GfdGvyLD~VD~y 151 (300)
T COG2342 92 WDKYWLT---G-RPDWLGE-------------EDPEWPGNYAVKYWEPEWKDIIRSYLDRLI-DQGFDGVYLDVVDAY 151 (300)
T ss_pred hhhhhhc---C-CcccccC-------------CCCCCCCCceeeccCHHHHHHHHHHHHHHH-HccCceEEEeeechH
Confidence 1111110 0 1111100 011234444568889999999999999999 999999999998643
No 122
>PF02446 Glyco_hydro_77: 4-alpha-glucanotransferase; InterPro: IPR003385 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The enzymes in this entry (2.4.1.25 from EC) belong to the glycoside hydrolase family 77 GH77 from CAZY, and transfer a segment of a (1,4)-alpha-D-glucan to a new 4-position in an acceptor, which may be glucose or (1,4)-alpha-D-glucan []. They belong to the disproportionating family of enzymes.; GO: 0004134 4-alpha-glucanotransferase activity, 0005975 carbohydrate metabolic process; PDB: 1TZ7_A 2X1I_A 2OWX_A 2OWW_A 1FP9_A 1CWY_A 1ESW_A 1FP8_A 2OWC_A 1X1N_A.
Probab=83.23 E-value=1.2 Score=44.68 Aligned_cols=46 Identities=22% Similarity=0.239 Sum_probs=27.7
Q ss_pred HHHHHHHHHHhCCCCEEEeccCCCC------C----------------HHHHHHHHHhhC-CCeEEEcccC
Q 021281 174 IIAWLRWLRNTVGFQDFRFDFARGY------S----------------AKYVKEYIEGAR-PIFSVGEYWD 221 (314)
Q Consensus 174 l~~~~~~w~~~~gvDGfRlDaa~~i------~----------------~~f~~~~~~~~~-~~~~~gE~~~ 221 (314)
.++-+++.+ .-+|++|+|.+..+ | .+++..+..+.. +..+|||-.+
T Consensus 268 w~~rl~~~~--~~~d~lRIDH~~Gf~r~W~IP~~~~~a~~G~~~~~p~~~ll~~l~~e~~r~~~vigEDLG 336 (496)
T PF02446_consen 268 WIDRLRANM--RLFDALRIDHFRGFFRYWWIPAGGETAIDGAWVRYPGEDLLAILALESGRDCLVIGEDLG 336 (496)
T ss_dssp HHHHHHHHH--CC-SEEEEETGGGGTEEEEEETT-SSSTT-EEEE--HHHHHHHHHHHHS-S-EEEE--TS
T ss_pred HHHHHHHHH--HhCCchHHHHHHHHHheeEecCCCCCCCCceeecchHHHHHHHHHHHcCCCCcEEEeecC
Confidence 333444443 67788999997542 1 467777777776 7889999543
No 123
>PF00724 Oxidored_FMN: NADH:flavin oxidoreductase / NADH oxidase family; InterPro: IPR001155 The TIM-barrel fold is a closed barrel structure composed of an eight-fold repeat of beta-alpha units, where the eight parallel beta strands on the inside are covered by the eight alpha helices on the outside []. It is a widely distributed fold which has been found in many enzyme families that catalyse completely unrelated reactions []. The active site is always found at the C-terminal end of this domain. Proteins in this entry are a variety of NADH:flavin oxidoreductase/NADH oxidase enzymes, found mostly in bacteria or fungi, that contain a TIM-barrel fold. They commonly use FMN/FAD as cofactor and include: dimethylamine dehydrogenase trimethylamine dehydrogenase 12-oxophytodienoate reductase NADPH dehydrogenase NADH oxidase ; GO: 0010181 FMN binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3GKA_B 3P67_A 3F03_K 2ABA_A 1VYR_A 1GVO_A 3KFT_B 3P8I_A 1GVQ_A 3P74_A ....
Probab=83.16 E-value=9.5 Score=36.17 Aligned_cols=73 Identities=15% Similarity=0.094 Sum_probs=43.2
Q ss_pred HHHHHhhhHHHHcCCCEEEeCCCCCCCCCCCCCcccCCCcCCCCCCHHHHHHHHHHHhhCCCEEEEeeeeccccCCCC
Q 021281 43 RNLERKVPDISKSGFTSVWLPPATHSFAPEGYLPQNLYSLNSSYGSEHLLKALLHKMKQHKVRAMADIVINHRVGTTQ 120 (314)
Q Consensus 43 ~gi~~~ldyl~~lG~~~I~l~Pi~~~~~~~gY~~~d~~~id~~~Gt~~df~~lv~~ah~~Gi~VilD~V~NH~~~~~~ 120 (314)
+...+.....++=|+.-|.+-...-+....++. .. -.|... -..+.||++++++|+.|-++++-+ +|.+....
T Consensus 36 ~~~~~yy~~rA~GG~Glii~~~~~v~~~~~~~~-~~-~~i~~d-~~i~~~k~l~~~vh~~Ga~i~~QL--~H~G~~~~ 108 (341)
T PF00724_consen 36 DRLIAYYERRAKGGAGLIITEATAVSPEGRGFP-GQ-PGIWDD-EQIPGLKKLADAVHAHGAKIIAQL--WHAGRQAN 108 (341)
T ss_dssp HHHHHHHHHHHHTTTSEEEEEEEESSGGGSSST-TS-EBSSSH-HHHHHHHHHHHHHHHTTSEEEEEE--E--GGGSS
T ss_pred HHHHHHHHHHhhcCCceEEeccccccccccccc-cc-chhchh-hHHHHHHHHHHHHHhcCccceeec--cccccccC
Confidence 456666667777788888764444333211111 10 111100 125689999999999999999975 78877543
No 124
>PLN02950 4-alpha-glucanotransferase
Probab=82.58 E-value=3.1 Score=44.71 Aligned_cols=24 Identities=17% Similarity=0.149 Sum_probs=21.6
Q ss_pred HHHHHHHHHHhhCCCEEEEeeeec
Q 021281 90 HLLKALLHKMKQHKVRAMADIVIN 113 (314)
Q Consensus 90 ~df~~lv~~ah~~Gi~VilD~V~N 113 (314)
.+++++.+.|+++||++|.|+.+.
T Consensus 461 ~Ql~~~~~yA~~~Gi~L~GDLpig 484 (909)
T PLN02950 461 SQLSEAAEYARKKGVVLKGDLPIG 484 (909)
T ss_pred HHHHHHHHHHHHCCCEEEEEeece
Confidence 368889999999999999999986
No 125
>PLN03236 4-alpha-glucanotransferase; Provisional
Probab=82.56 E-value=3.2 Score=43.43 Aligned_cols=29 Identities=14% Similarity=0.069 Sum_probs=23.6
Q ss_pred HHHHHHHHHHhhCCCEEEEeeeeccccCCC
Q 021281 90 HLLKALLHKMKQHKVRAMADIVINHRVGTT 119 (314)
Q Consensus 90 ~df~~lv~~ah~~Gi~VilD~V~NH~~~~~ 119 (314)
.+++++.+.|+++||++|-|+.+- ++.++
T Consensus 274 ~Q~~~~~~yA~~~GI~L~GDLPIg-Va~dS 302 (745)
T PLN03236 274 RQLRRAAAHAAAKGVILKGDLPIG-VDKAS 302 (745)
T ss_pred HHHHHHHHHHHHCCCEEEEEeece-eCCCc
Confidence 468888889999999999999987 44443
No 126
>PF14701 hDGE_amylase: glucanotransferase domain of human glycogen debranching enzyme
Probab=82.00 E-value=2.6 Score=41.12 Aligned_cols=53 Identities=15% Similarity=0.265 Sum_probs=43.8
Q ss_pred CCCCCCCCCC-----CHHHHHHHHHHHHHHHHhCCCCEEEeccCCCCCHHHHHHHHHhhC
Q 021281 157 FHGVPNIDHT-----QHFVRKDIIAWLRWLRNTVGFQDFRFDFARGYSAKYVKEYIEGAR 211 (314)
Q Consensus 157 ~~~~~dln~~-----~p~v~~~l~~~~~~w~~~~gvDGfRlDaa~~i~~~f~~~~~~~~~ 211 (314)
|++...|+|. +|.++++|.++.+... .=++|||+|.....|...-+.+.+++|
T Consensus 360 WGDcVKLRYG~~peDsP~LW~~M~~Yt~~~A--~iF~G~RiDNCHSTPlhVaeylLd~AR 417 (423)
T PF14701_consen 360 WGDCVKLRYGSKPEDSPFLWKHMKEYTELMA--KIFHGFRIDNCHSTPLHVAEYLLDAAR 417 (423)
T ss_pred cCceeeecCCCCCCCCHHHHHHHHHHHHHHH--HhcCeeeeecCCCCcHHHHHHHHHHHH
Confidence 4566777774 6999999999998885 668999999999999888777777654
No 127
>PRK14507 putative bifunctional 4-alpha-glucanotransferase/malto-oligosyltrehalose synthase; Provisional
Probab=81.72 E-value=2.5 Score=48.05 Aligned_cols=67 Identities=21% Similarity=0.171 Sum_probs=53.5
Q ss_pred ceeEEEEeeCCCC---CCchHHHHHHhhhHHHHcCCCEEEeCCCC---CCC--CCCCCCcccCCCcCCCCCCHHH
Q 021281 25 REILFQGFNWESC---KHDWWRNLERKVPDISKSGFTSVWLPPAT---HSF--APEGYLPQNLYSLNSSYGSEHL 91 (314)
Q Consensus 25 ~~~i~q~F~w~~~---~~g~~~gi~~~ldyl~~lG~~~I~l~Pi~---~~~--~~~gY~~~d~~~id~~~Gt~~d 91 (314)
-++++|+|.=.+. +-|||..+.+-++.+++.|.+.|+|+|++ +.. ..+.|.+.+-+.+||-|=+.++
T Consensus 173 wG~~~qLYsLRS~~~~GIGDfgdL~~~~d~la~~Ga~~lqlnPLhA~~p~~p~~~SPYsp~Sr~alNPlYIdle~ 247 (1693)
T PRK14507 173 WGLAAQLYGLRSARNWGIGDFGDLGRLVRDAALRGASFLGLSPLHALFPTDPAKASPYSPSSRLFLNTLYIDVEA 247 (1693)
T ss_pred eEEEeeeeeeeeCCCCCcccHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCCCCCCCCcCcccccccChHhcCHhh
Confidence 4689999985443 34799999999999999999999999998 222 4678999998889877766543
No 128
>PRK09936 hypothetical protein; Provisional
Probab=81.07 E-value=7.6 Score=35.97 Aligned_cols=164 Identities=15% Similarity=0.278 Sum_probs=91.6
Q ss_pred ccccCCceeEEEEeeCCCCCCc-hHHHHHHhhhHHHHcCCCEEEeCCCCCCCCCCCCCcccCCCcCCCCCCH-HHHHHHH
Q 021281 19 AVIRNGREILFQGFNWESCKHD-WWRNLERKVPDISKSGFTSVWLPPATHSFAPEGYLPQNLYSLNSSYGSE-HLLKALL 96 (314)
Q Consensus 19 ~~~~~~~~~i~q~F~w~~~~~g-~~~gi~~~ldyl~~lG~~~I~l~Pi~~~~~~~gY~~~d~~~id~~~Gt~-~df~~lv 96 (314)
|.-...++++||-+..|..-+- +|+.+ +..++.+||++|.+- ..+| -++.||+. .-|.+.+
T Consensus 16 ~~~~a~~g~F~Qp~n~d~~~~~~qWq~~---~~~~~~~G~~tLivQ-------Wt~y-------G~~~fg~~~g~La~~l 78 (296)
T PRK09936 16 PFSQAMKGIFYQPQNRDSQVTDTQWQGL---WSQLRLQGFDTLVVQ-------WTRY-------GDADFGGQRGWLAKRL 78 (296)
T ss_pred chhhccccceeccccccCCCCHHHHHHH---HHHHHHcCCcEEEEE-------eeec-------cCCCcccchHHHHHHH
Confidence 3333456799999998855442 56554 566899999999753 2233 12256654 4699999
Q ss_pred HHHhhCCCEEEEeeeec-----cccCCCCCCCCcCcCCCCCCCCCCC---CCcc---cCCCCCccccCCCCCCCCCC-CC
Q 021281 97 HKMKQHKVRAMADIVIN-----HRVGTTQGHGGKYNRYDGIPLSWDE---HAVT---SCTGGLGNGSTGDNFHGVPN-ID 164 (314)
Q Consensus 97 ~~ah~~Gi~VilD~V~N-----H~~~~~~~~~~~y~~f~~~~~~~~~---~~~~---~~~~~~~~~~~~~~~~~~~d-ln 164 (314)
++|++.||+|++=+-++ |...+.... ..| |.. .++. .+....+....|..++..+| ++
T Consensus 79 ~~A~~~Gl~v~vGL~~Dp~y~q~~~~d~~~~-~~y---------l~~~l~~~~~qa~~~~~~~~~~v~GWYiP~ElDd~~ 148 (296)
T PRK09936 79 AAAQQAGLKLVVGLYADPEFFMHQKQDGAAL-ESY---------LNRQLGASLQQARLWSAAWGVPVDGWYLPAELDDLN 148 (296)
T ss_pred HHHHHcCCEEEEcccCChHHHHHHhcCchhH-HHH---------HHHHHHHHHHHHHHHHhccCCCCCeEEeeeccchhc
Confidence 99999999999966543 110000000 000 000 0000 00011111123333455555 78
Q ss_pred CCCHHHHHHHHHHHHHHHHhCC-------CCEEEeccCCCCCHHHHHHHHHhhCC
Q 021281 165 HTQHFVRKDIIAWLRWLRNTVG-------FQDFRFDFARGYSAKYVKEYIEGARP 212 (314)
Q Consensus 165 ~~~p~v~~~l~~~~~~w~~~~g-------vDGfRlDaa~~i~~~f~~~~~~~~~~ 212 (314)
+..++-|+.+...+...+..+. |..| + ...+.++.+..+.+.+.+
T Consensus 149 W~~~~rR~~L~~~L~~~~~~l~~~~kPv~ISay--~-~g~~sP~~l~~Wl~~l~~ 200 (296)
T PRK09936 149 WRDEARRQPLLTWLNAAQRLIDVSAKPVHISAF--F-AGNMSPDGYRQWLEQLKA 200 (296)
T ss_pred ccCHHHHHHHHHHHHHHHHhCCCCCCCeEEEee--c-ccCCChHHHHHHHHHHhh
Confidence 8899999999988877764444 1111 1 134456666777776543
No 129
>KOG3625 consensus Alpha amylase [Carbohydrate transport and metabolism]
Probab=80.81 E-value=3.3 Score=44.00 Aligned_cols=66 Identities=11% Similarity=0.230 Sum_probs=50.1
Q ss_pred CCCCCCCCCCC-----CHHHHHHHHHHHHHHHHhCCCCEEEeccCCCCCHHHHHHHHHhh---CC-CeEEEcccCCC
Q 021281 156 NFHGVPNIDHT-----QHFVRKDIIAWLRWLRNTVGFQDFRFDFARGYSAKYVKEYIEGA---RP-IFSVGEYWDSC 223 (314)
Q Consensus 156 ~~~~~~dln~~-----~p~v~~~l~~~~~~w~~~~gvDGfRlDaa~~i~~~f~~~~~~~~---~~-~~~~gE~~~~~ 223 (314)
.|.+...|+|. +|.+++.|.+++..-. .=+||+|+|.....|..--..+.+++ +| .|+++|-+.+.
T Consensus 494 ~WGDsVKLryG~kpeDsPyLWq~M~kY~e~tA--riFdG~RlDNcHsTPlHVaEylLd~ARk~nPnlYVvAELFtgS 568 (1521)
T KOG3625|consen 494 CWGDSVKLRYGNKPEDSPYLWQHMKKYTEITA--RIFDGVRLDNCHSTPLHVAEYLLDAARKLNPNLYVVAELFTGS 568 (1521)
T ss_pred eecceeeeccCCCcccChHHHHHHHHHHHHHH--HHhcceeeccCCCCchhHHHHHHHHHHhcCCCeEEEeeeccCC
Confidence 35667778885 4888888888876653 56899999999999876665555554 45 69999998873
No 130
>PF07488 Glyco_hydro_67M: Glycosyl hydrolase family 67 middle domain; InterPro: IPR011100 Alpha-glucuronidases, components of an ensemble of enzymes central to the recycling of photosynthetic biomass, remove the alpha-1,2 linked 4-O-methyl glucuronic acid from xylans. This family represents the central catalytic domain of alpha-glucuronidase [].; GO: 0046559 alpha-glucuronidase activity, 0045493 xylan catabolic process, 0005576 extracellular region; PDB: 1MQP_A 1K9E_A 1MQQ_A 1L8N_A 1K9D_A 1MQR_A 1K9F_A 1GQL_A 1GQI_B 1GQJ_B ....
Probab=80.30 E-value=12 Score=34.94 Aligned_cols=104 Identities=13% Similarity=0.082 Sum_probs=63.0
Q ss_pred hHHHHHHhhhHHHHcCCCEEEeCCCCCCCCCCCCCcccCCCcCCCCCCHHHHHHHHHHHhhCCCEEEEeeeeccccCCCC
Q 021281 41 WWRNLERKVPDISKSGFTSVWLPPATHSFAPEGYLPQNLYSLNSSYGSEHLLKALLHKMKQHKVRAMADIVINHRVGTTQ 120 (314)
Q Consensus 41 ~~~gi~~~ldyl~~lG~~~I~l~Pi~~~~~~~gY~~~d~~~id~~~Gt~~df~~lv~~ah~~Gi~VilD~V~NH~~~~~~ 120 (314)
+...+.+-..-+++.|+|+|-|+=+.-+. ..+.+.+ .+.+++|.+..+.-||||.|-+-+. |..
T Consensus 55 ~~~R~~~YARllASiGINgvvlNNVNa~~----------~~Lt~~~--l~~v~~lAdvfRpYGIkv~LSvnFa--sP~-- 118 (328)
T PF07488_consen 55 DLTRYRDYARLLASIGINGVVLNNVNANP----------KLLTPEY--LDKVARLADVFRPYGIKVYLSVNFA--SPI-- 118 (328)
T ss_dssp --HHHHHHHHHHHHTT--EEE-S-SS--C----------GGGSTTT--HHHHHHHHHHHHHTT-EEEEEE-TT--HHH--
T ss_pred chhHHHHHHHHHhhcCCceEEecccccCh----------hhcCHHH--HHHHHHHHHHHhhcCCEEEEEeecc--CCc--
Confidence 67778888888899999999998776442 2344443 6899999999999999999954221 110
Q ss_pred CCCCcCcCCCCCCCCCCCCCcccCCCCCccccCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHh-CCCCEEEeccC
Q 021281 121 GHGGKYNRYDGIPLSWDEHAVTSCTGGLGNGSTGDNFHGVPNIDHTQHFVRKDIIAWLRWLRNT-VGFQDFRFDFA 195 (314)
Q Consensus 121 ~~~~~y~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~~p~v~~~l~~~~~~w~~~-~gvDGfRlDaa 195 (314)
...+++..|--+|+|+..-.+.+..+-+. =++-||-+-|=
T Consensus 119 -----------------------------------~lggL~TaDPld~~V~~WW~~k~~eIY~~IPDfgGflVKAd 159 (328)
T PF07488_consen 119 -----------------------------------ELGGLPTADPLDPEVRQWWKDKADEIYSAIPDFGGFLVKAD 159 (328)
T ss_dssp -----------------------------------HTTS-S---TTSHHHHHHHHHHHHHHHHH-TT--EEEE--S
T ss_pred -----------------------------------ccCCcCcCCCCCHHHHHHHHHHHHHHHHhCCCccceEEEec
Confidence 12345556667799999999888776643 37889988773
No 131
>PLN03059 beta-galactosidase; Provisional
Probab=80.28 E-value=3.5 Score=43.60 Aligned_cols=54 Identities=6% Similarity=0.028 Sum_probs=37.1
Q ss_pred HHhhhHHHHcCCCEEEeCCCCCCC-CCCCCCcccCCCcCCCCCCHHHHHHHHHHHhhCCCEEEE
Q 021281 46 ERKVPDISKSGFTSVWLPPATHSF-APEGYLPQNLYSLNSSYGSEHLLKALLHKMKQHKVRAMA 108 (314)
Q Consensus 46 ~~~ldyl~~lG~~~I~l~Pi~~~~-~~~gY~~~d~~~id~~~Gt~~df~~lv~~ah~~Gi~Vil 108 (314)
.++|..+|++|+|+|..-=+...- ...| ..| |.+..||.++++.|++.||.||+
T Consensus 62 ~d~L~k~Ka~GlNtV~tYV~Wn~HEp~~G--~~d-------F~G~~DL~~Fl~la~e~GLyvil 116 (840)
T PLN03059 62 PDLIQKAKDGGLDVIQTYVFWNGHEPSPG--NYY-------FEDRYDLVKFIKVVQAAGLYVHL 116 (840)
T ss_pred HHHHHHHHHcCCCeEEEEecccccCCCCC--eee-------ccchHHHHHHHHHHHHcCCEEEe
Confidence 356677899999999753222111 0111 122 23578999999999999999999
No 132
>COG0041 PurE Phosphoribosylcarboxyaminoimidazole (NCAIR) mutase [Nucleotide transport and metabolism]
Probab=79.62 E-value=6.4 Score=32.93 Aligned_cols=50 Identities=8% Similarity=0.143 Sum_probs=41.5
Q ss_pred hHHHHHHhhhHHHHcCCCEEEeCCCCCCCCCCCCCcccCCCcCCCCCCHHHHHHHHHHHhhCCCEEEEe
Q 021281 41 WWRNLERKVPDISKSGFTSVWLPPATHSFAPEGYLPQNLYSLNSSYGSEHLLKALLHKMKQHKVRAMAD 109 (314)
Q Consensus 41 ~~~gi~~~ldyl~~lG~~~I~l~Pi~~~~~~~gY~~~d~~~id~~~Gt~~df~~lv~~ah~~Gi~VilD 109 (314)
||+.+.+..+-|.++|+.+-- .|-+..-|++-+.+++++++++|++||+=
T Consensus 14 D~~~mk~Aa~~L~~fgi~ye~-------------------~VvSAHRTPe~m~~ya~~a~~~g~~viIA 63 (162)
T COG0041 14 DWDTMKKAAEILEEFGVPYEV-------------------RVVSAHRTPEKMFEYAEEAEERGVKVIIA 63 (162)
T ss_pred hHHHHHHHHHHHHHcCCCeEE-------------------EEEeccCCHHHHHHHHHHHHHCCCeEEEe
Confidence 799999999999999985431 24445558999999999999999999983
No 133
>PF03198 Glyco_hydro_72: Glucanosyltransferase; InterPro: IPR004886 This family is a group of yeast glycolipid proteins anchored to the membrane. It includes Candida albicans (Yeast) pH-regulated protein, which is required for apical growth and plays a role in morphogenesis and Saccharomyces cerevisiae glycolipid anchored surface protein.; PDB: 2W61_A 2W62_A 2W63_A.
Probab=79.44 E-value=5.4 Score=37.34 Aligned_cols=57 Identities=12% Similarity=0.172 Sum_probs=35.8
Q ss_pred hHHHHHHhhhHHHHcCCCEEEeCCCCCCCCCCCCCcccCCCcCCCCCCHHHHHHHHHHHhhCCCEEEEeeeeccccCC
Q 021281 41 WWRNLERKVPDISKSGFTSVWLPPATHSFAPEGYLPQNLYSLNSSYGSEHLLKALLHKMKQHKVRAMADIVINHRVGT 118 (314)
Q Consensus 41 ~~~gi~~~ldyl~~lG~~~I~l~Pi~~~~~~~gY~~~d~~~id~~~Gt~~df~~lv~~ah~~Gi~VilD~V~NH~~~~ 118 (314)
|-+.-..-+++||+||+|+|-+ |.|||.. +=.+..+++.+.||.||+|+-.-+.+..
T Consensus 51 d~~~C~rDi~~l~~LgiNtIRV-----------------Y~vdp~~----nHd~CM~~~~~aGIYvi~Dl~~p~~sI~ 107 (314)
T PF03198_consen 51 DPEACKRDIPLLKELGINTIRV-----------------YSVDPSK----NHDECMSAFADAGIYVILDLNTPNGSIN 107 (314)
T ss_dssp -HHHHHHHHHHHHHHT-SEEEE-----------------S---TTS------HHHHHHHHHTT-EEEEES-BTTBS--
T ss_pred CHHHHHHhHHHHHHcCCCEEEE-----------------EEeCCCC----CHHHHHHHHHhCCCEEEEecCCCCcccc
Confidence 5566677889999999999984 4455544 2335666778899999999987766554
No 134
>TIGR03356 BGL beta-galactosidase.
Probab=79.33 E-value=4.8 Score=39.52 Aligned_cols=64 Identities=14% Similarity=0.210 Sum_probs=45.0
Q ss_pred hHHHHHHhhhHHHHcCCCEEEeCCCCCCCCCCCCCcccCCCcCCCCCCHHHHHHHHHHHhhCCCEEEEeee
Q 021281 41 WWRNLERKVPDISKSGFTSVWLPPATHSFAPEGYLPQNLYSLNSSYGSEHLLKALLHKMKQHKVRAMADIV 111 (314)
Q Consensus 41 ~~~gi~~~ldyl~~lG~~~I~l~Pi~~~~~~~gY~~~d~~~id~~~Gt~~df~~lv~~ah~~Gi~VilD~V 111 (314)
.+....+-++-|++||++++=++=-....-..|- -.++ -...+-.+++|++|+++||++|+++.
T Consensus 52 ~y~~y~eDi~l~~~~G~~~~R~si~Wsri~p~g~-----~~~n--~~~~~~y~~~i~~l~~~gi~pivtL~ 115 (427)
T TIGR03356 52 HYHRYEEDVALMKELGVDAYRFSIAWPRIFPEGT-----GPVN--PKGLDFYDRLVDELLEAGIEPFVTLY 115 (427)
T ss_pred HHHhHHHHHHHHHHcCCCeEEcccchhhcccCCC-----CCcC--HHHHHHHHHHHHHHHHcCCeeEEeec
Confidence 7889999999999999999976532222111221 0111 11246688999999999999999884
No 135
>COG1640 MalQ 4-alpha-glucanotransferase [Carbohydrate transport and metabolism]
Probab=78.90 E-value=4.4 Score=40.66 Aligned_cols=45 Identities=11% Similarity=-0.056 Sum_probs=34.7
Q ss_pred ceeEEEEeeCCCCCC---chHHHHHHhhhHHH-HcCCCEEEeCCCCCCC
Q 021281 25 REILFQGFNWESCKH---DWWRNLERKVPDIS-KSGFTSVWLPPATHSF 69 (314)
Q Consensus 25 ~~~i~q~F~w~~~~~---g~~~gi~~~ldyl~-~lG~~~I~l~Pi~~~~ 69 (314)
.++.+|++.=.+++. |||..+.-.+.-.. +-|.+.++|+|++...
T Consensus 14 ~g~~v~L~~~~~~~~~GIGDfgdla~~~~d~~~~~g~~~~qi~Plh~~~ 62 (520)
T COG1640 14 WGSGVQLYSLRLPGSWGIGDFGDLAYLFVDFLARHGQDYWQILPLHATG 62 (520)
T ss_pred ccceeEEeeeccCCCCCccchhhHHHHHHHHHHHccCCeEEeccCCccc
Confidence 457778887666554 69998888876555 9999999999997554
No 136
>PRK05939 hypothetical protein; Provisional
Probab=78.42 E-value=5.8 Score=38.48 Aligned_cols=84 Identities=8% Similarity=0.054 Sum_probs=50.9
Q ss_pred ccCCceeEEEEeeCCCCCCchHHHHHHhhhHHHHcCCCEEEeCCCC-C---CCCCCCCCcccCCCcCCCCCCHHHHHHHH
Q 021281 21 IRNGREILFQGFNWESCKHDWWRNLERKVPDISKSGFTSVWLPPAT-H---SFAPEGYLPQNLYSLNSSYGSEHLLKALL 96 (314)
Q Consensus 21 ~~~~~~~i~q~F~w~~~~~g~~~gi~~~ldyl~~lG~~~I~l~Pi~-~---~~~~~gY~~~d~~~id~~~Gt~~df~~lv 96 (314)
.++|+.||+.-..+ -+-...+..++..|+..+++.+.- + ..-...-..+-.-.+....|...++++++
T Consensus 83 l~~Gd~Vv~~~~~y--------~~t~~~~~~l~~~G~~v~~v~~~d~e~l~~~l~~~tklV~vesp~NptG~v~dl~~I~ 154 (397)
T PRK05939 83 LRAGDHLVSSQFLF--------GNTNSLFGTLRGLGVEVTMVDATDVQNVAAAIRPNTRMVFVETIANPGTQVADLAGIG 154 (397)
T ss_pred cCCCCEEEECCCcc--------ccHHHHHHHHHhcCCEEEEECCCCHHHHHHhCCCCCeEEEEECCCCCCCCHHhHHHHH
Confidence 56677787754332 111222234677899888876531 0 00011111111223445678889999999
Q ss_pred HHHhhCCCEEEEeeee
Q 021281 97 HKMKQHKVRAMADIVI 112 (314)
Q Consensus 97 ~~ah~~Gi~VilD~V~ 112 (314)
+.||++|+.||+|-+.
T Consensus 155 ~la~~~gi~livD~t~ 170 (397)
T PRK05939 155 ALCRERGLLYVVDNTM 170 (397)
T ss_pred HHHHHcCCEEEEECCc
Confidence 9999999999999864
No 137
>cd02929 TMADH_HD_FMN Trimethylamine dehydrogenase (TMADH) and histamine dehydrogenase (HD) FMN-binding domain. TMADH is an iron-sulfur flavoprotein that catalyzes the oxidative demethylation of trimethylamine to form dimethylamine and formaldehyde. The protein forms a symetrical dimer with each subunit containing one 4Fe-4S cluster and one FMN cofactor. It contains a unique flavin, in the form of a 6-S-cysteinyl FMN which is bent by ~25 degrees along the N5-N10 axis of the flavin isoalloxazine ring. This modification of the conformation of the flavin is thought to facilitate catalysis.The closely related histamine dehydrogenase catalyzes oxidative deamination of histamine.
Probab=77.46 E-value=37 Score=32.61 Aligned_cols=29 Identities=17% Similarity=0.145 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHhhCCCEEEEeeeeccccCCC
Q 021281 89 EHLLKALLHKMKQHKVRAMADIVINHRVGTT 119 (314)
Q Consensus 89 ~~df~~lv~~ah~~Gi~VilD~V~NH~~~~~ 119 (314)
.+.+++|++++|++|-++++-+. |.|...
T Consensus 82 i~~~~~l~~~vh~~G~~i~~QL~--H~G~~~ 110 (370)
T cd02929 82 IRNLAAMTDAVHKHGALAGIELW--HGGAHA 110 (370)
T ss_pred HHHHHHHHHHHHHCCCeEEEecc--cCCCCC
Confidence 57899999999999999998764 887643
No 138
>PRK13210 putative L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=77.08 E-value=5.6 Score=36.10 Aligned_cols=64 Identities=17% Similarity=0.120 Sum_probs=42.4
Q ss_pred EeeCCCCCCchHHHHHHhhhHHHHcCCCEEEeCCCCCCCCCCCCCcccCCCcCCCCCCHHHHHHHHHHHhhCCCEEEE
Q 021281 31 GFNWESCKHDWWRNLERKVPDISKSGFTSVWLPPATHSFAPEGYLPQNLYSLNSSYGSEHLLKALLHKMKQHKVRAMA 108 (314)
Q Consensus 31 ~F~w~~~~~g~~~gi~~~ldyl~~lG~~~I~l~Pi~~~~~~~gY~~~d~~~id~~~Gt~~df~~lv~~ah~~Gi~Vil 108 (314)
+|.+..|+. -.+.+.++.++++||++|.|.+.... ....+.++ +.++++++.+.+.+.||+|..
T Consensus 7 ~~~~~~~~~---~~~~e~~~~~~~~G~~~iEl~~~~~~---~~~~~~~~--------~~~~~~~l~~~l~~~Gl~i~~ 70 (284)
T PRK13210 7 IYEKALPKH---LSWEERLVFAKELGFDFVEMSVDESD---ERLARLDW--------SKEERLSLVKAIYETGVRIPS 70 (284)
T ss_pred hhhhhcCCC---CCHHHHHHHHHHcCCCeEEEecCCcc---cccccccC--------CHHHHHHHHHHHHHcCCCceE
Confidence 455554433 24678899999999999999643100 01111111 457899999999999999874
No 139
>cd06546 GH18_CTS3_chitinase GH18 domain of CTS3 (chitinase 3), an uncharacterized protein from the human fungal pathogen Coccidioides posadasii. CTS3 has a chitinase-like glycosyl hydrolase family 18 (GH18) domain; and has homologs in bacteria as well as fungi.
Probab=76.46 E-value=30 Score=31.44 Aligned_cols=46 Identities=13% Similarity=0.130 Sum_probs=32.2
Q ss_pred CHHHHHHHHHHHHHHHHhCCCCEEEeccCCCCC----HHHHHHHHHhhCC
Q 021281 167 QHFVRKDIIAWLRWLRNTVGFQDFRFDFARGYS----AKYVKEYIEGARP 212 (314)
Q Consensus 167 ~p~v~~~l~~~~~~w~~~~gvDGfRlDaa~~i~----~~f~~~~~~~~~~ 212 (314)
+++-|+.+.+.+..+++++|+||+-+|==.... ..+++++.++..+
T Consensus 93 ~~~~r~~f~~s~~~~~~~~~~DGiDiDwE~p~~~~~~~~ll~~Lr~~~~~ 142 (256)
T cd06546 93 DDEDFERYYGQLRDMIRRRGLDGLDLDVEEPMSLDGIIRLIDRLRSDFGP 142 (256)
T ss_pred CHHHHHHHHHHHHHHHHHhCCCceEEeeecCCCHhHHHHHHHHHHHHhCC
Confidence 466677777777788889999999998754332 3566666665543
No 140
>cd02803 OYE_like_FMN_family Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=76.42 E-value=17 Score=33.83 Aligned_cols=69 Identities=16% Similarity=0.194 Sum_probs=39.1
Q ss_pred HHhhhHHHHcCCCEEEeCCCCCCCCCCCCCcccCCCcCCCCCCHHHHHHHHHHHhhCCCEEEEeeeeccccCCC
Q 021281 46 ERKVPDISKSGFTSVWLPPATHSFAPEGYLPQNLYSLNSSYGSEHLLKALLHKMKQHKVRAMADIVINHRVGTT 119 (314)
Q Consensus 46 ~~~ldyl~~lG~~~I~l~Pi~~~~~~~gY~~~d~~~id~~~Gt~~df~~lv~~ah~~Gi~VilD~V~NH~~~~~ 119 (314)
.+.....++-|+.-|..-...-+....+| +.. -.+... ...+.+|++++++|+.|-++++-+ +|.|...
T Consensus 36 ~~~y~~ra~gg~glii~e~~~v~~~~~~~-~~~-~~~~~~-~~~~~~~~~~~~vh~~g~~~~~Ql--~h~G~~~ 104 (327)
T cd02803 36 IEYYEERAKGGVGLIITEAAYVDPEGKGY-PGQ-LGIYDD-EQIPGLRKLTEAVHAHGAKIFAQL--AHAGRQA 104 (327)
T ss_pred HHHHHHHhCcCCcEEEECcEEEcCcccCC-CCC-cCcCCH-HHHHHHHHHHHHHHhCCCHhhHHh--hCCCcCC
Confidence 33344445567877766544433322221 110 001100 125789999999999999988754 7877654
No 141
>TIGR01210 conserved hypothetical protein TIGR01210. This family of exclusively archaeal proteins has no characterized close homologs. Several rounds of PSI-BLAST with a stringent cutoff of 1e-8 shows apparent similarity of the central region of this family to the central regions of the oxygen-independent coproporphyrinogen III dehydrogenase HemN and to other enzymes.
Probab=75.96 E-value=5.4 Score=37.43 Aligned_cols=60 Identities=13% Similarity=0.073 Sum_probs=38.8
Q ss_pred HHhhhHHHHcCCC-EEEeCCCCCCCCCCCCCcccC-CCcCCCCCCHHHHHHHHHHHhhCCCEEEEeeeec
Q 021281 46 ERKVPDISKSGFT-SVWLPPATHSFAPEGYLPQNL-YSLNSSYGSEHLLKALLHKMKQHKVRAMADIVIN 113 (314)
Q Consensus 46 ~~~ldyl~~lG~~-~I~l~Pi~~~~~~~gY~~~d~-~~id~~~Gt~~df~~lv~~ah~~Gi~VilD~V~N 113 (314)
.+.|..|++.|++ .|.|.+ ++. - ..-. ..++-.+ |.+++.+.++.+|+.||+|.+++.++
T Consensus 117 ~e~L~~l~~aG~~~~v~iG~--ES~----~-d~~L~~~inKg~-t~~~~~~ai~~~~~~Gi~v~~~~i~G 178 (313)
T TIGR01210 117 EEKLEELRKIGVNVEVAVGL--ETA----N-DRIREKSINKGS-TFEDFIRAAELARKYGAGVKAYLLFK 178 (313)
T ss_pred HHHHHHHHHcCCCEEEEEec--CcC----C-HHHHHHhhCCCC-CHHHHHHHHHHHHHcCCcEEEEEEec
Confidence 4455556666665 455543 111 1 1102 1344444 78999999999999999999999887
No 142
>TIGR00539 hemN_rel putative oxygen-independent coproporphyrinogen III oxidase. Experimentally determined examples of oxygen-independent coproporphyrinogen III oxidase, an enzyme that replaces HemF function under anaerobic conditions, belong to a family of proteins described by the model hemN. This model, hemN_rel, models a closely related protein, shorter at the amino end and lacking the region containing the motif PYRT[SC]YP found in members of the hemN family. Several species, including E. coli, Helicobacter pylori, Aquifex aeolicus, and Chlamydia trachomatis, have members of both this family and the E. coli hemN family. The member of this family from Bacillus subtilis was shown to complement an hemF/hemN double mutant of Salmonella typimurium and to prevent accumulation of coproporphyrinogen III under anaerobic conditions, but the exact role of this protein is still uncertain. It is found in a number of species that do not synthesize heme de novo.
Probab=75.57 E-value=6.2 Score=37.64 Aligned_cols=63 Identities=11% Similarity=0.126 Sum_probs=41.8
Q ss_pred HhhhHHHHcCCCEEEeCCCCCCCCCCCCCcccCCCcCCCCCCHHHHHHHHHHHhhCCCE-EEEeeeeccccC
Q 021281 47 RKVPDISKSGFTSVWLPPATHSFAPEGYLPQNLYSLNSSYGSEHLLKALLHKMKQHKVR-AMADIVINHRVG 117 (314)
Q Consensus 47 ~~ldyl~~lG~~~I~l~Pi~~~~~~~gY~~~d~~~id~~~Gt~~df~~lv~~ah~~Gi~-VilD~V~NH~~~ 117 (314)
+.|..|+++||+.|.+..= + .+..-+..+ .+-.+.++..+.|+.+++.|++ |-+|+.++.-+.
T Consensus 101 e~l~~l~~~Gv~risiGvq--S-----~~~~~l~~l-gR~~~~~~~~~ai~~l~~~G~~~v~~dli~GlPgq 164 (360)
T TIGR00539 101 EWCKGLKGAGINRLSLGVQ--S-----FRDDKLLFL-GRQHSAKNIAPAIETALKSGIENISLDLMYGLPLQ 164 (360)
T ss_pred HHHHHHHHcCCCEEEEecc--c-----CChHHHHHh-CCCCCHHHHHHHHHHHHHcCCCeEEEeccCCCCCC
Confidence 4556666666666665431 1 111112234 4567899999999999999996 779999886554
No 143
>TIGR00542 hxl6Piso_put hexulose-6-phosphate isomerase, putative. This family is conserved at better than 40 % identity among the four known examples from three species: Escherichia coli (SgbU and SgaU), Haemophilus influenzae, and Mycoplasma pneumoniae. The rarity of the family, high level of conservation, and proposed catabolic role suggests lateral transfer may be a part of the evolutionary history of this protein.
Probab=75.23 E-value=6.2 Score=35.95 Aligned_cols=64 Identities=14% Similarity=0.039 Sum_probs=43.4
Q ss_pred EEeeCCCCCCchHHHHHHhhhHHHHcCCCEEEeCCCCCCCCCCCCCcccCCCcCCCCCCHHHHHHHHHHHhhCCCEEE
Q 021281 30 QGFNWESCKHDWWRNLERKVPDISKSGFTSVWLPPATHSFAPEGYLPQNLYSLNSSYGSEHLLKALLHKMKQHKVRAM 107 (314)
Q Consensus 30 q~F~w~~~~~g~~~gi~~~ldyl~~lG~~~I~l~Pi~~~~~~~gY~~~d~~~id~~~Gt~~df~~lv~~ah~~Gi~Vi 107 (314)
-+|.|-++.+ ..+.+.|+.++++||++|.|.+-... ....+.+ -+.++++++.+.+.+.||+|.
T Consensus 6 ~~~~~~~~~~---~~~~e~l~~~~~~G~~~VEl~~~~~~---~~~~~~~--------~~~~~~~~~~~~l~~~gl~i~ 69 (279)
T TIGR00542 6 GIYEKALPKG---ECWLERLQLAKTCGFDFVEMSVDETD---DRLSRLD--------WSREQRLALVNAIIETGVRIP 69 (279)
T ss_pred ceehhhCCCC---CCHHHHHHHHHHcCCCEEEEecCCcc---chhhccC--------CCHHHHHHHHHHHHHcCCCce
Confidence 3566654433 45788899999999999999532100 0111111 157889999999999999986
No 144
>PRK07094 biotin synthase; Provisional
Probab=75.21 E-value=6.6 Score=36.72 Aligned_cols=37 Identities=16% Similarity=-0.007 Sum_probs=30.1
Q ss_pred CcCCCCCCHHHHHHHHHHHhhCCCEEEEeeeeccccCC
Q 021281 81 SLNSSYGSEHLLKALLHKMKQHKVRAMADIVINHRVGT 118 (314)
Q Consensus 81 ~id~~~Gt~~df~~lv~~ah~~Gi~VilD~V~NH~~~~ 118 (314)
.+.+ -.+.++..+.++.+++.||.|-.++++.+-+..
T Consensus 157 ~i~~-~~s~~~~~~~i~~l~~~Gi~v~~~~iiGlpget 193 (323)
T PRK07094 157 KLHP-GMSFENRIACLKDLKELGYEVGSGFMVGLPGQT 193 (323)
T ss_pred HhCC-CCCHHHHHHHHHHHHHcCCeecceEEEECCCCC
Confidence 3444 367899999999999999999999999875543
No 145
>KOG0496 consensus Beta-galactosidase [Carbohydrate transport and metabolism]
Probab=74.98 E-value=6.2 Score=40.36 Aligned_cols=72 Identities=13% Similarity=0.186 Sum_probs=45.8
Q ss_pred eeEEEEeeCCCCCC-chHHHHHHhhhHHHHcCCCEEEeCCCCCCC--CCCCCCcccCCCcCCCCCCHHHHHHHHHHHhhC
Q 021281 26 EILFQGFNWESCKH-DWWRNLERKVPDISKSGFTSVWLPPATHSF--APEGYLPQNLYSLNSSYGSEHLLKALLHKMKQH 102 (314)
Q Consensus 26 ~~i~q~F~w~~~~~-g~~~gi~~~ldyl~~lG~~~I~l~Pi~~~~--~~~gY~~~d~~~id~~~Gt~~df~~lv~~ah~~ 102 (314)
.+++-++..+.-.. .-| .+.+..+|++|+++|+.-=++..- ....| .|...-||.++|+.||+.
T Consensus 34 ~~~isGsIHY~R~~pe~W---~~~i~k~k~~Gln~IqtYVfWn~Hep~~g~y----------~FsG~~DlvkFikl~~~~ 100 (649)
T KOG0496|consen 34 FILISGSIHYPRSTPEMW---PDLIKKAKAGGLNVIQTYVFWNLHEPSPGKY----------DFSGRYDLVKFIKLIHKA 100 (649)
T ss_pred eEEEEeccccccCChhhh---HHHHHHHHhcCCceeeeeeecccccCCCCcc----------cccchhHHHHHHHHHHHC
Confidence 45666655431111 123 356677899999999864333211 11222 355778999999999999
Q ss_pred CCEEEEee
Q 021281 103 KVRAMADI 110 (314)
Q Consensus 103 Gi~VilD~ 110 (314)
|+.|+|=+
T Consensus 101 GLyv~LRi 108 (649)
T KOG0496|consen 101 GLYVILRI 108 (649)
T ss_pred CeEEEecC
Confidence 99999943
No 146
>PRK14581 hmsF outer membrane N-deacetylase; Provisional
Probab=74.92 E-value=57 Score=34.06 Aligned_cols=133 Identities=15% Similarity=0.094 Sum_probs=77.4
Q ss_pred hHHHHHHhhhHHHHcCCCEEEeCCCCCCCCCCCCCcccCCCcCCCCCCHHH-HHHHHHHHhhC-CCEEEEeeeeccccCC
Q 021281 41 WWRNLERKVPDISKSGFTSVWLPPATHSFAPEGYLPQNLYSLNSSYGSEHL-LKALLHKMKQH-KVRAMADIVINHRVGT 118 (314)
Q Consensus 41 ~~~gi~~~ldyl~~lG~~~I~l~Pi~~~~~~~gY~~~d~~~id~~~Gt~~d-f~~lv~~ah~~-Gi~VilD~V~NH~~~~ 118 (314)
--+.|..-+++|+++|+++|+|-.+....+. |-. .-.|-.+.++==.+| |-+..=+++.| |++|+.-+.+=-..-.
T Consensus 332 ~~~nl~~l~~ri~~~~~~~VyLqafadp~gd-g~~-~~lYFpnr~lPmraDlfnrvawql~tR~~v~vyAWmpvl~~~l~ 409 (672)
T PRK14581 332 EKENLDKLVQRISDLRVTHVFLQAFSDPKGD-GNI-RQVYFPNRWIPMRQDLFNRVVWQLASRPDVEVYAWMPVLAFDMD 409 (672)
T ss_pred HhhhHHHHHHHHHhcCCCEEEEEeeeCCCCC-Cce-eeEEecCCcccHHHhhhhHHHHHHHhhhCceEEEeeehhhccCC
Confidence 5567777889999999999999988765422 211 112334444433455 45554566644 9999997765422110
Q ss_pred CCCCCCcCcCCCCCCCCCCCCCcccCCCCCccccCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCCCCEEEecc
Q 021281 119 TQGHGGKYNRYDGIPLSWDEHAVTSCTGGLGNGSTGDNFHGVPNIDHTQHFVRKDIIAWLRWLRNTVGFQDFRFDF 194 (314)
Q Consensus 119 ~~~~~~~y~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~~p~v~~~l~~~~~~w~~~~gvDGfRlDa 194 (314)
.. + +. ...+.+.. +.. ...-.+.+.|..-+|++|+.|.++...+.....|||+-+.-
T Consensus 410 ~~-----~-~~---~~~~~~~~------~~~----~~~~~~y~rlspf~~~~~~~i~~iy~DLa~~~~~~GilfhD 466 (672)
T PRK14581 410 PS-----L-PR---ITRIDPKT------GKT----SIDPDQYRRLSPFNPEVRQRIIDIYRDMAYSAPIDGIIYHD 466 (672)
T ss_pred cc-----c-ch---hhhccccc------Ccc----ccCCCCccccCCCCHHHHHHHHHHHHHHHhcCCCCeEEecc
Confidence 00 0 00 01111100 000 00011234567778999999999999998656999988854
No 147
>PRK10076 pyruvate formate lyase II activase; Provisional
Probab=74.90 E-value=20 Score=31.73 Aligned_cols=66 Identities=11% Similarity=0.106 Sum_probs=44.2
Q ss_pred HHHHHHhhhHHHHcCCCEEEeCCCCCCCCCCCCCccc-CCCc-CCCCCCHHHHHHHHHHHhhCCCEEEE
Q 021281 42 WRNLERKVPDISKSGFTSVWLPPATHSFAPEGYLPQN-LYSL-NSSYGSEHLLKALLHKMKQHKVRAMA 108 (314)
Q Consensus 42 ~~gi~~~ldyl~~lG~~~I~l~Pi~~~~~~~gY~~~d-~~~i-d~~~Gt~~df~~lv~~ah~~Gi~Vil 108 (314)
-+.+++.++.|+++|+..|.|.|.++.. -+.|.-.+ -|.+ +..-=+.+.++++.+.+.++|+++++
T Consensus 144 ~e~i~~ia~~l~~l~~~~~~llpyh~~g-~~Ky~~lg~~y~~~~~~~~~~~~l~~~~~~~~~~gl~~~i 211 (213)
T PRK10076 144 RENMQQALDVLIPLGIKQIHLLPFHQYG-EPKYRLLGKTWSMKEVPAPSSADVATMREMAERAGFQVTV 211 (213)
T ss_pred HHHHHHHHHHHHHcCCceEEEecCCccc-hhHHHHcCCcCccCCCCCcCHHHHHHHHHHHHHcCCeEEe
Confidence 5667777788888999999999988653 11221100 0111 21223678899999999999999975
No 148
>cd06547 GH85_ENGase Endo-beta-N-acetylglucosaminidase (ENGase) hydrolyzes the N-N'-diacetylchitobiosyl core of N-glycosylproteins. The beta-1,4-glycosyl bond located between two N-acetylglucosamine residues is hydrolyzed such that N-acetylglucosamine 1 remains with the protein and N-acetylglucosamine 2 forms the reducing end of the released glycan. ENGase is a key enzyme in the processing of free oligosaccharides in the cytosol of eukaryotes. Oligosaccharides formed in the lumen of the endoplasmic reticulum are transported into the cytosol where they are catabolized by cytosolic ENGases and other enzymes, possibly to maximize the reutilization of the component sugars. ENGases have an eight-stranded alpha/beta barrel topology and are classified as a family 85 glycosyl hydrolase (GH85) domain. The GH85 ENGases are sequence-similar to the family 18 glycosyl hydrolases, also known as GH18 chitinases. An ENGase-like protein is also found in bacteria and is included in this alignment mod
Probab=74.03 E-value=4.7 Score=38.35 Aligned_cols=44 Identities=7% Similarity=0.042 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHHHHHHhCCCCEEEeccCCCC-C-------HHHHHHHHHhhC
Q 021281 168 HFVRKDIIAWLRWLRNTVGFQDFRFDFARGY-S-------AKYVKEYIEGAR 211 (314)
Q Consensus 168 p~v~~~l~~~~~~w~~~~gvDGfRlDaa~~i-~-------~~f~~~~~~~~~ 211 (314)
++.+..+++-|..+++.+|+||+-+|.=... + .+|++++.++++
T Consensus 85 ~~~~~~~a~kLv~lak~yGfDGw~iN~E~~~~~~~~~~~l~~F~~~L~~~~~ 136 (339)
T cd06547 85 EDGSFPVADKLVEVAKYYGFDGWLINIETELGDAEKAKRLIAFLRYLKAKLH 136 (339)
T ss_pred cccchHHHHHHHHHHHHhCCCceEeeeeccCCcHHHHHHHHHHHHHHHHHHh
Confidence 4455666777777778999999999987665 2 247777777665
No 149
>TIGR00433 bioB biotin synthetase. Catalyzes the last step of the biotin biosynthesis pathway.
Probab=73.75 E-value=8 Score=35.50 Aligned_cols=28 Identities=7% Similarity=-0.014 Sum_probs=25.0
Q ss_pred CCHHHHHHHHHHHhhCCCEEEEeeeecc
Q 021281 87 GSEHLLKALLHKMKQHKVRAMADIVINH 114 (314)
Q Consensus 87 Gt~~df~~lv~~ah~~Gi~VilD~V~NH 114 (314)
.+.++..+.++.+|+.||+|...+++.+
T Consensus 155 ~s~~~~~~ai~~l~~~Gi~v~~~~i~Gl 182 (296)
T TIGR00433 155 HTYDDRVDTLENAKKAGLKVCSGGIFGL 182 (296)
T ss_pred CCHHHHHHHHHHHHHcCCEEEEeEEEeC
Confidence 4788999999999999999999988875
No 150
>PRK08207 coproporphyrinogen III oxidase; Provisional
Probab=73.72 E-value=8.6 Score=38.47 Aligned_cols=64 Identities=14% Similarity=0.189 Sum_probs=44.9
Q ss_pred HHhhhHHHHcCCCEEEeCCCCCCCCCCCCCcccCCCcCCCCCCHHHHHHHHHHHhhCCC-EEEEeeeeccccC
Q 021281 46 ERKVPDISKSGFTSVWLPPATHSFAPEGYLPQNLYSLNSSYGSEHLLKALLHKMKQHKV-RAMADIVINHRVG 117 (314)
Q Consensus 46 ~~~ldyl~~lG~~~I~l~Pi~~~~~~~gY~~~d~~~id~~~Gt~~df~~lv~~ah~~Gi-~VilD~V~NH~~~ 117 (314)
.++|..|++.||+.|.|.|= +. ...-+..+ .+-.|.+++.+.++.|++.|+ .|-+|+.+.--+.
T Consensus 269 ~e~L~~Lk~~Gv~RISIGvQ--S~-----~d~vLk~i-gR~ht~e~v~~ai~~ar~~Gf~~In~DLI~GLPgE 333 (488)
T PRK08207 269 EEKLEVLKKYGVDRISINPQ--TM-----NDETLKAI-GRHHTVEDIIEKFHLAREMGFDNINMDLIIGLPGE 333 (488)
T ss_pred HHHHHHHHhcCCCeEEEcCC--cC-----CHHHHHHh-CCCCCHHHHHHHHHHHHhCCCCeEEEEEEeCCCCC
Confidence 46677778888888877662 11 11112234 344689999999999999999 7889999886443
No 151
>PTZ00445 p36-lilke protein; Provisional
Probab=73.67 E-value=9.6 Score=33.79 Aligned_cols=61 Identities=11% Similarity=0.168 Sum_probs=40.7
Q ss_pred HHHHHHhhhHHHHcCCCEEEe------CCCCCCCCCCCCCcccCCCcCCCCCC--HHHHHHHHHHHhhCCCEEEE
Q 021281 42 WRNLERKVPDISKSGFTSVWL------PPATHSFAPEGYLPQNLYSLNSSYGS--EHLLKALLHKMKQHKVRAMA 108 (314)
Q Consensus 42 ~~gi~~~ldyl~~lG~~~I~l------~Pi~~~~~~~gY~~~d~~~id~~~Gt--~~df~~lv~~ah~~Gi~Vil 108 (314)
-+.+....+.|++.|+++|-+ .+++ +.||.--+ .-+.++++ .++|+.+++++++.||+|++
T Consensus 28 ~~~~~~~v~~L~~~GIk~Va~D~DnTlI~~H----sgG~~~~~--~~~~~~~~~~tpefk~~~~~l~~~~I~v~V 96 (219)
T PTZ00445 28 HESADKFVDLLNECGIKVIASDFDLTMITKH----SGGYIDPD--NDDIRVLTSVTPDFKILGKRLKNSNIKISV 96 (219)
T ss_pred HHHHHHHHHHHHHcCCeEEEecchhhhhhhh----cccccCCC--cchhhhhccCCHHHHHHHHHHHHCCCeEEE
Confidence 455666678899999999975 2332 23554332 12222222 25699999999999999987
No 152
>cd04747 OYE_like_5_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 5. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=73.10 E-value=90 Score=29.94 Aligned_cols=72 Identities=7% Similarity=0.052 Sum_probs=40.4
Q ss_pred HHHHHhhhHHHHcCCCEEEeCCCCCCCC-CCCCCcccCCCcCCCCCCHHHHHHHHHHHhhCCCEEEEeeeeccccCCC
Q 021281 43 RNLERKVPDISKSGFTSVWLPPATHSFA-PEGYLPQNLYSLNSSYGSEHLLKALLHKMKQHKVRAMADIVINHRVGTT 119 (314)
Q Consensus 43 ~gi~~~ldyl~~lG~~~I~l~Pi~~~~~-~~gY~~~d~~~id~~~Gt~~df~~lv~~ah~~Gi~VilD~V~NH~~~~~ 119 (314)
+...+.....++-|+.-|.+-...-+.. ..++ +.. ..+... .-.+.||++++++|+.|-++++-+ +|.|...
T Consensus 33 ~~~~~yy~~rA~GG~GlIite~~~V~~~~~~~~-~~~-~~~~~d-~~i~~~~~l~d~vh~~Ga~i~~QL--~H~Gr~~ 105 (361)
T cd04747 33 QDVAAYYRRRAAGGVGLIITEGTAVDHPAASGD-PNV-PRFHGE-DALAGWKKVVDEVHAAGGKIAPQL--WHVGAMR 105 (361)
T ss_pred HHHHHHHHHHhcCCccEEEecceEeccccccCC-CCC-CccCCH-HHHHHHHHHHHHHHhcCCEEEEec--cCCCCCc
Confidence 3444444455556777776644332211 1111 100 011100 124789999999999999999876 7777643
No 153
>PF01373 Glyco_hydro_14: Glycosyl hydrolase family 14; InterPro: IPR001554 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 14 GH14 from CAZY comprises enzymes with only one known activity; beta-amylase (3.2.1.2 from EC). A Glu residue has been proposed as a catalytic residue, but it is not known if it is the nucleophile or the proton donor. Beta-amylase [, ] is an enzyme that hydrolyses 1,4-alpha-glucosidic linkages in starch-type polysaccharide substrates so as to remove successive maltose units from the non-reducing ends of the chains. Beta-amylase is present in certain bacteria as well as in plants. Three highly conserved sequence regions are found in all known beta-amylases. The first of these regions is located in the N-terminal section of the enzymes and contains an aspartate which is known [] to be involved in the catalytic mechanism. The second, located in a more central location, is centred around a glutamate which is also involved [] in the catalytic mechanism. The 3D structure of a complex of soybean beta-amylase with an inhibitor (alpha-cyclodextrin) has been determined to 3.0A resolution by X-ray diffraction []. The enzyme folds into large and small domains: the large domain has a (beta alpha)8 super-secondary structural core, while the smaller is formed from two long loops extending from the beta-3 and beta-4 strands of the (beta alpha)8 fold []. The interface of the two domains, together with shorter loops from the (beta alpha)8 core, form a deep cleft, in which the inhibitor binds []. Two maltose molecules also bind in the cleft, one sharing a binding site with alpha-cyclodextrin, and the other sitting more deeply in the cleft [].; GO: 0016161 beta-amylase activity, 0000272 polysaccharide catabolic process; PDB: 1FA2_A 2DQX_A 1WDP_A 1UKP_C 1BYC_A 1BYA_A 1Q6C_A 1V3I_A 1BTC_A 1BYB_A ....
Probab=72.84 E-value=6.3 Score=38.19 Aligned_cols=67 Identities=13% Similarity=0.261 Sum_probs=47.0
Q ss_pred CchHHHHHHhhhHHHHcCCCEEEeCCC---CCCCCCCCCCcccCCCcCCCCCCHHHHHHHHHHHhhCCCEEEEeeeeccc
Q 021281 39 HDWWRNLERKVPDISKSGFTSVWLPPA---THSFAPEGYLPQNLYSLNSSYGSEHLLKALLHKMKQHKVRAMADIVINHR 115 (314)
Q Consensus 39 ~g~~~gi~~~ldyl~~lG~~~I~l~Pi---~~~~~~~gY~~~d~~~id~~~Gt~~df~~lv~~ah~~Gi~VilD~V~NH~ 115 (314)
+++++.+...|..||.+||++|-+-=. .+..++..| .....++|.+-+++.|+||..=+-+..+
T Consensus 12 ~~~~~~~~~~L~~LK~~GV~GVmvdvWWGiVE~~~p~~y-------------dWs~Y~~l~~~vr~~GLk~~~vmsfH~c 78 (402)
T PF01373_consen 12 DNDWNALEAQLRALKSAGVDGVMVDVWWGIVEGEGPQQY-------------DWSGYRELFEMVRDAGLKLQVVMSFHQC 78 (402)
T ss_dssp TSECHHHHHHHHHHHHTTEEEEEEEEEHHHHTGSSTTB----------------HHHHHHHHHHHHTT-EEEEEEE-S-B
T ss_pred CCcHHHHHHHHHHHHHcCCcEEEEEeEeeeeccCCCCcc-------------CcHHHHHHHHHHHHcCCeEEEEEeeecC
Confidence 457889999999999999999976321 122222222 3577899999999999999998888887
Q ss_pred cCC
Q 021281 116 VGT 118 (314)
Q Consensus 116 ~~~ 118 (314)
+..
T Consensus 79 GgN 81 (402)
T PF01373_consen 79 GGN 81 (402)
T ss_dssp SSS
T ss_pred CCC
Confidence 753
No 154
>PRK05967 cystathionine beta-lyase; Provisional
Probab=72.73 E-value=11 Score=36.72 Aligned_cols=85 Identities=11% Similarity=0.051 Sum_probs=51.6
Q ss_pred ccCCceeEEEEeeCCCCCCchHHHHHHhh-hHHHHcCCCEEEeCCCC----CCCCCCCCCcccCCCcCCCCCCHHHHHHH
Q 021281 21 IRNGREILFQGFNWESCKHDWWRNLERKV-PDISKSGFTSVWLPPAT----HSFAPEGYLPQNLYSLNSSYGSEHLLKAL 95 (314)
Q Consensus 21 ~~~~~~~i~q~F~w~~~~~g~~~gi~~~l-dyl~~lG~~~I~l~Pi~----~~~~~~gY~~~d~~~id~~~Gt~~df~~l 95 (314)
.++|+.|++.--. +-+-...+ ..++..|++..++.|-- +..-...-..+-...+....++..+++++
T Consensus 100 l~~GD~Vlv~~~~--------Y~~~~~l~~~~l~~~Gi~v~~vd~~~~e~l~~al~~~TklV~lesPsNP~l~v~dl~~I 171 (395)
T PRK05967 100 LSPGDHALIVDSV--------YYPTRHFCDTMLKRLGVEVEYYDPEIGAGIAKLMRPNTKVVHTEAPGSNTFEMQDIPAI 171 (395)
T ss_pred cCCCCEEEEccCC--------cHHHHHHHHHHHHhcCeEEEEeCCCCHHHHHHhcCcCceEEEEECCCCCCCcHHHHHHH
Confidence 5677777776222 22222223 34577899888875421 00001111112122333447899999999
Q ss_pred HHHHhhCCCEEEEeeeec
Q 021281 96 LHKMKQHKVRAMADIVIN 113 (314)
Q Consensus 96 v~~ah~~Gi~VilD~V~N 113 (314)
++.||++|+.||+|-++.
T Consensus 172 ~~la~~~g~~vvVD~t~a 189 (395)
T PRK05967 172 AEAAHRHGAIVMMDNTWA 189 (395)
T ss_pred HHHHHHhCCEEEEECCcc
Confidence 999999999999999875
No 155
>cd00598 GH18_chitinase-like The GH18 (glycosyl hydrolase, family 18) type II chitinases hydrolyze chitin, an abundant polymer of beta-1,4-linked N-acetylglucosamine (GlcNAc) which is a major component of the cell wall of fungi and the exoskeleton of arthropods. Chitinases have been identified in viruses, bacteria, fungi, protozoan parasites, insects, and plants. The structure of the GH18 domain is an eight-stranded beta/alpha barrel with a pronounced active-site cleft at the C-terminal end of the beta-barrel. The GH18 family includes chitotriosidase, chitobiase, hevamine, zymocin-alpha, narbonin, SI-CLP (stabilin-1 interacting chitinase-like protein), IDGF (imaginal disc growth factor), CFLE (cortical fragment-lytic enzyme) spore hydrolase, the type III and type V plant chitinases, the endo-beta-N-acetylglucosaminidases, and the chitolectins. The GH85 (glycosyl hydrolase, family 85) ENGases (endo-beta-N-acetylglucosaminidases) are closely related to the GH18 chitinases and are inclu
Probab=71.92 E-value=21 Score=30.56 Aligned_cols=47 Identities=15% Similarity=0.143 Sum_probs=35.0
Q ss_pred CCHHHHHHHHHHHHHHHHhCCCCEEEeccCCCC--C-------HHHHHHHHHhhCC
Q 021281 166 TQHFVRKDIIAWLRWLRNTVGFQDFRFDFARGY--S-------AKYVKEYIEGARP 212 (314)
Q Consensus 166 ~~p~v~~~l~~~~~~w~~~~gvDGfRlDaa~~i--~-------~~f~~~~~~~~~~ 212 (314)
.++..|+.+++.+..+++++|+||+-+|--... . ..|++++.++.++
T Consensus 84 ~~~~~~~~f~~~~~~~v~~~~~DGidiD~E~~~~~~~~~~~~~~~ll~~lr~~l~~ 139 (210)
T cd00598 84 SDPASRAAFANSLVSFLKTYGFDGVDIDWEYPGAADNSDRENFITLLRELRSALGA 139 (210)
T ss_pred cCHHHHHHHHHHHHHHHHHcCCCceEEeeeCCCCcCccHHHHHHHHHHHHHHHhcc
Confidence 457889999999988999999999999974321 1 2566666666654
No 156
>KOG2499 consensus Beta-N-acetylhexosaminidase [Carbohydrate transport and metabolism]
Probab=71.87 E-value=23 Score=35.23 Aligned_cols=30 Identities=7% Similarity=0.195 Sum_probs=26.8
Q ss_pred CHHHHHHHHHHHhhCCCEEEEee-eeccccC
Q 021281 88 SEHLLKALLHKMKQHKVRAMADI-VINHRVG 117 (314)
Q Consensus 88 t~~df~~lv~~ah~~Gi~VilD~-V~NH~~~ 117 (314)
|.+|.+++|+-|+-|||+||..+ ++.|++.
T Consensus 248 T~eDv~evV~yarlRGIRVlpEfD~PgHt~s 278 (542)
T KOG2499|consen 248 TREDVSEVVEYARLRGIRVLPEFDTPGHTGS 278 (542)
T ss_pred cHHHHHHHHHHHHhccceeeecccCCccccc
Confidence 78999999999999999999987 4677776
No 157
>PRK13523 NADPH dehydrogenase NamA; Provisional
Probab=71.58 E-value=68 Score=30.39 Aligned_cols=70 Identities=9% Similarity=-0.010 Sum_probs=43.1
Q ss_pred HHHHHhhhHHHHcCCCEEEeCCCCCCCCCCCCCcccCCCc-CCCCCCHHHHHHHHHHHhhCCCEEEEeeeeccccCC
Q 021281 43 RNLERKVPDISKSGFTSVWLPPATHSFAPEGYLPQNLYSL-NSSYGSEHLLKALLHKMKQHKVRAMADIVINHRVGT 118 (314)
Q Consensus 43 ~gi~~~ldyl~~lG~~~I~l~Pi~~~~~~~gY~~~d~~~i-d~~~Gt~~df~~lv~~ah~~Gi~VilD~V~NH~~~~ 118 (314)
+...+.....++-|+.-|..-.....+.+.++ +.. ..+ +.. -.+.+++|++++|+.|-++++-+ +|.+..
T Consensus 37 ~~~~~~y~~rA~gG~GlIi~~~~~v~~~~~~~-~~~-~~~~~d~--~i~~~r~l~d~vh~~G~~i~~QL--~H~G~~ 107 (337)
T PRK13523 37 NFHLIHYGTRAAGQVGLVIVEATAVLPEGRIS-DKD-LGIWDDE--HIEGLHKLVTFIHDHGAKAAIQL--AHAGRK 107 (337)
T ss_pred HHHHHHHHHHHcCCCeEEEECCeEECccccCC-CCc-eecCCHH--HHHHHHHHHHHHHhcCCEEEEEc--cCCCCC
Confidence 34445555666778988877655444322221 110 011 111 25789999999999999998865 777664
No 158
>PRK01060 endonuclease IV; Provisional
Probab=71.36 E-value=9.6 Score=34.62 Aligned_cols=53 Identities=13% Similarity=0.138 Sum_probs=39.0
Q ss_pred HHHHHHhhhHHHHcCCCEEEeCCCCCCCCCCCCCcccCCCcCCCCCCHHHHHHHHHHHhhCCCEE
Q 021281 42 WRNLERKVPDISKSGFTSVWLPPATHSFAPEGYLPQNLYSLNSSYGSEHLLKALLHKMKQHKVRA 106 (314)
Q Consensus 42 ~~gi~~~ldyl~~lG~~~I~l~Pi~~~~~~~gY~~~d~~~id~~~Gt~~df~~lv~~ah~~Gi~V 106 (314)
+.++.+.++.++++|+++|.|.+-- ++.+. +..-+.++++++.+.+.+.||++
T Consensus 11 ~~~~~~~l~~~~~~G~d~vEl~~~~----p~~~~--------~~~~~~~~~~~lk~~~~~~gl~~ 63 (281)
T PRK01060 11 AGGLEGAVAEAAEIGANAFMIFTGN----PQQWK--------RKPLEELNIEAFKAACEKYGISP 63 (281)
T ss_pred CCCHHHHHHHHHHcCCCEEEEECCC----CCCCc--------CCCCCHHHHHHHHHHHHHcCCCC
Confidence 3458889999999999999986521 11111 11137888999999999999995
No 159
>PF01136 Peptidase_U32: Peptidase family U32 This is family U32 in the peptidase classification. ; InterPro: IPR001539 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. The peptidases families associated with clan U- have an unknown catalytic mechanism as the protein fold of the active site domain and the active site residues have not been reported. This is a group of peptidases belonging to MEROPS peptidase family U32 (clan U-). The type example is collagenase (gene prtC) from Porphyromonas gingivalis (Bacteroides gingivalis) [], which is an enzyme that degrades type I collagen and that seems to require a metal cofactor. The product of PrtC is evolutionary related to a number of uncharacterised proteins with a well conserved region containing two cysteines.; GO: 0008233 peptidase activity, 0006508 proteolysis
Probab=71.36 E-value=62 Score=28.46 Aligned_cols=36 Identities=22% Similarity=0.366 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHhCCCCEEEeccCCCCCHHHHHHHHHh
Q 021281 172 KDIIAWLRWLRNTVGFQDFRFDFARGYSAKYVKEYIEG 209 (314)
Q Consensus 172 ~~l~~~~~~w~~~~gvDGfRlDaa~~i~~~f~~~~~~~ 209 (314)
-.+.+.+..++ +.||+.||+|.-..- .+++.++++.
T Consensus 156 l~l~~~l~~L~-~~Gv~~~rI~~r~~~-~~~~~~iv~~ 191 (233)
T PF01136_consen 156 LCLLDELPELK-DAGVDSFRIDGRTES-PEYIEEIVKA 191 (233)
T ss_pred hhHHHHHHHHH-HcCCCEEEEcCccCC-HHHHHHHHHH
Confidence 45667777787 999999999997665 5555555554
No 160
>PRK08208 coproporphyrinogen III oxidase; Validated
Probab=71.21 E-value=8.4 Score=37.75 Aligned_cols=30 Identities=7% Similarity=0.047 Sum_probs=25.6
Q ss_pred CHHHHHHHHHHHhhCCCEEE-EeeeeccccC
Q 021281 88 SEHLLKALLHKMKQHKVRAM-ADIVINHRVG 117 (314)
Q Consensus 88 t~~df~~lv~~ah~~Gi~Vi-lD~V~NH~~~ 117 (314)
+.++..+.|+.|++.|+.+| +|+.++.-+.
T Consensus 175 ~~~~~~~ai~~l~~~g~~~i~~dlI~GlP~q 205 (430)
T PRK08208 175 KRADVHQALEWIRAAGFPILNIDLIYGIPGQ 205 (430)
T ss_pred CHHHHHHHHHHHHHcCCCeEEEEeecCCCCC
Confidence 78899999999999999865 9998886554
No 161
>PRK05628 coproporphyrinogen III oxidase; Validated
Probab=71.06 E-value=9.5 Score=36.55 Aligned_cols=34 Identities=6% Similarity=-0.042 Sum_probs=28.5
Q ss_pred CCCCCHHHHHHHHHHHhhCCCE-EEEeeeeccccC
Q 021281 84 SSYGSEHLLKALLHKMKQHKVR-AMADIVINHRVG 117 (314)
Q Consensus 84 ~~~Gt~~df~~lv~~ah~~Gi~-VilD~V~NH~~~ 117 (314)
.+-.+.++..+.++.+++.|++ |.+|++++.-+.
T Consensus 138 ~R~~s~~~~~~a~~~l~~~g~~~v~~dli~GlPgq 172 (375)
T PRK05628 138 DRTHTPGRAVAAAREARAAGFEHVNLDLIYGTPGE 172 (375)
T ss_pred CCCCCHHHHHHHHHHHHHcCCCcEEEEEeccCCCC
Confidence 3445788999999999999999 999999986554
No 162
>COG1902 NemA NADH:flavin oxidoreductases, Old Yellow Enzyme family [Energy production and conversion]
Probab=70.57 E-value=66 Score=30.93 Aligned_cols=28 Identities=18% Similarity=0.146 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHhhCCCEEEEeeeeccccCC
Q 021281 89 EHLLKALLHKMKQHKVRAMADIVINHRVGT 118 (314)
Q Consensus 89 ~~df~~lv~~ah~~Gi~VilD~V~NH~~~~ 118 (314)
.+.|+++++++|+.|-++++-+ +|.|..
T Consensus 82 i~~~~~vt~avH~~G~~i~iQL--~H~Gr~ 109 (363)
T COG1902 82 IPGLKRLTEAVHAHGAKIFIQL--WHAGRK 109 (363)
T ss_pred hHHHHHHHHHHHhcCCeEEEEe--ccCccc
Confidence 5689999999999999999865 888854
No 163
>cd02932 OYE_YqiM_FMN Old yellow enzyme (OYE) YqjM-like FMN binding domain. YqjM is involved in the oxidative stress response of Bacillus subtilis. Like the other OYE members, each monomer of YqjM contains FMN as a non-covalently bound cofactor and uses NADPH as a reducing agent. The YqjM enzyme exists as a homotetramer that is assembled as a dimer of catalytically dependent dimers, while other OYE members exist only as monomers or dimers. Moreover, the protein displays a shared active site architecture where an arginine finger at the COOH terminus of one monomer extends into the active site of the adjacent monomer and is directly involved in substrate recognition. Another remarkable difference in the binding of the ligand in YqjM is represented by the contribution of the NH2-terminal tyrosine instead of a COOH-terminal tyrosine in OYE and its homologs.
Probab=69.94 E-value=82 Score=29.64 Aligned_cols=72 Identities=13% Similarity=0.024 Sum_probs=42.0
Q ss_pred HHHHHhhhHHHHcCCCEEEeCCCCCCCCCCCCCcccCCCcCCCCCCHHHHHHHHHHHhhCCCEEEEeeeeccccCCC
Q 021281 43 RNLERKVPDISKSGFTSVWLPPATHSFAPEGYLPQNLYSLNSSYGSEHLLKALLHKMKQHKVRAMADIVINHRVGTT 119 (314)
Q Consensus 43 ~gi~~~ldyl~~lG~~~I~l~Pi~~~~~~~gY~~~d~~~id~~~Gt~~df~~lv~~ah~~Gi~VilD~V~NH~~~~~ 119 (314)
+...+.....++-|+..|..-...-.....+| +... .+... .-.+.||+|++++|+.|-++++-+ +|.|...
T Consensus 33 ~~~~~~y~~rA~gg~glii~~~~~v~~~~~~~-~~~~-~~~~d-~~~~~~~~l~~~vh~~G~~~~~QL--~H~G~~~ 104 (336)
T cd02932 33 DWHLVHYGSRALGGAGLVIVEATAVSPEGRIT-PGDL-GLWND-EQIEALKRIVDFIHSQGAKIGIQL--AHAGRKA 104 (336)
T ss_pred HHHHHHHHHHHcCCCcEEEEcceEECCCcCCC-CCce-eecCH-HHHHHHHHHHHHHHhcCCcEEEEc--cCCCcCC
Confidence 33444444555668888876554443322221 1100 01100 124789999999999999998865 6777643
No 164
>cd02931 ER_like_FMN Enoate reductase (ER)-like FMN-binding domain. Enoate reductase catalyzes the NADH-dependent reduction of carbon-carbon double bonds of several molecules, including nonactivated 2-enoates, alpha,beta-unsaturated aldehydes, cyclic ketones, and methylketones. ERs are similar to 2,4-dienoyl-CoA reductase from E. coli and to the old yellow enzyme from Saccharomyces cerevisiae.
Probab=69.83 E-value=82 Score=30.37 Aligned_cols=28 Identities=4% Similarity=0.030 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHhhCCCEEEEeeeeccc-cCC
Q 021281 89 EHLLKALLHKMKQHKVRAMADIVINHR-VGT 118 (314)
Q Consensus 89 ~~df~~lv~~ah~~Gi~VilD~V~NH~-~~~ 118 (314)
.+.||+|++++|++|-++++-+ +|. +..
T Consensus 82 i~~~k~l~davh~~G~~i~~QL--~H~~Gr~ 110 (382)
T cd02931 82 IRTAKEMTERVHAYGTKIFLQL--TAGFGRV 110 (382)
T ss_pred hHHHHHHHHHHHHcCCEEEEEc--cCcCCCc
Confidence 4679999999999999999766 675 543
No 165
>cd04734 OYE_like_3_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 3. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. One member of this subgroup, the Sinorhizobium meliloti stachydrine utilization protein stcD, has been idenified as a putative N-methylproline demethylase.
Probab=68.78 E-value=1.1e+02 Score=29.06 Aligned_cols=69 Identities=9% Similarity=-0.022 Sum_probs=43.2
Q ss_pred HHHHHhhhHHHHcCCCEEEeCCCCCCCCCCCCCcccCCCcCCCCCC---HHHHHHHHHHHhhCCCEEEEeeeeccccCCC
Q 021281 43 RNLERKVPDISKSGFTSVWLPPATHSFAPEGYLPQNLYSLNSSYGS---EHLLKALLHKMKQHKVRAMADIVINHRVGTT 119 (314)
Q Consensus 43 ~gi~~~ldyl~~lG~~~I~l~Pi~~~~~~~gY~~~d~~~id~~~Gt---~~df~~lv~~ah~~Gi~VilD~V~NH~~~~~ 119 (314)
+.+.+.....++-|+.-|..-..+-++...++ +. .+.+-+ .+.+++|++++|+.|-++++- ++|.|...
T Consensus 33 ~~~~~~y~~~A~gG~GlIi~e~~~v~~~~~~~-~~-----~~~l~~d~~i~~~~~l~~~vh~~g~~~~~Q--l~H~G~~~ 104 (343)
T cd04734 33 ERYIAYHEERARGGAGLIITEGSSVHPSDSPA-FG-----NLNASDDEIIPGFRRLAEAVHAHGAVIMIQ--LTHLGRRG 104 (343)
T ss_pred HHHHHHHHHHHhCCCCEEEEeeeeeCCcccCC-CC-----ccccCCHHHHHHHHHHHHHHHhcCCeEEEe--ccCCCcCc
Confidence 34455556666778888876555444322222 11 122222 468999999999999999984 57876543
No 166
>PRK06256 biotin synthase; Validated
Probab=68.74 E-value=9.2 Score=35.98 Aligned_cols=33 Identities=6% Similarity=-0.024 Sum_probs=27.7
Q ss_pred CcCCCCCCHHHHHHHHHHHhhCCCEEEEeeeecc
Q 021281 81 SLNSSYGSEHLLKALLHKMKQHKVRAMADIVINH 114 (314)
Q Consensus 81 ~id~~~Gt~~df~~lv~~ah~~Gi~VilD~V~NH 114 (314)
.+.+. .+.++..+.++.||+.||+|...+++.+
T Consensus 179 ~i~~~-~t~~~~i~~i~~a~~~Gi~v~~~~I~Gl 211 (336)
T PRK06256 179 NVVTT-HTYEDRIDTCEMVKAAGIEPCSGGIIGM 211 (336)
T ss_pred hcCCC-CCHHHHHHHHHHHHHcCCeeccCeEEeC
Confidence 34443 3788999999999999999999999986
No 167
>PRK15014 6-phospho-beta-glucosidase BglA; Provisional
Probab=67.65 E-value=29 Score=34.67 Aligned_cols=64 Identities=8% Similarity=0.193 Sum_probs=43.2
Q ss_pred hHHHHHHhhhHHHHcCCCEEEeCCCCCCCCCCCCCcccCCCcCCCCCCHHHHHHHHHHHhhCCCEEEEee
Q 021281 41 WWRNLERKVPDISKSGFTSVWLPPATHSFAPEGYLPQNLYSLNSSYGSEHLLKALLHKMKQHKVRAMADI 110 (314)
Q Consensus 41 ~~~gi~~~ldyl~~lG~~~I~l~Pi~~~~~~~gY~~~d~~~id~~~Gt~~df~~lv~~ah~~Gi~VilD~ 110 (314)
.+....+-++-+++||+++-=++=-+...-+.|... .+ .--..+=.++||++|.++||+.|+.+
T Consensus 67 ~Yhry~EDI~Lm~elG~~~yRfSIsWsRI~P~G~~~----~~--N~~gl~~Y~~lid~l~~~GI~P~vTL 130 (477)
T PRK15014 67 FYGHYKEDIKLFAEMGFKCFRTSIAWTRIFPKGDEA----QP--NEEGLKFYDDMFDELLKYNIEPVITL 130 (477)
T ss_pred cccccHHHHHHHHHcCCCEEEecccceeeccCCCCC----CC--CHHHHHHHHHHHHHHHHcCCEEEEEe
Confidence 678889999999999999986643222111122100 01 11134558899999999999999966
No 168
>PF08821 CGGC: CGGC domain; InterPro: IPR014925 Proteins in this entry are a quite highly conserved sequence of CGGC in its central region. The region has many conserved cysteines and histidines suggestive of a zinc binding function.
Probab=67.50 E-value=23 Score=27.81 Aligned_cols=54 Identities=17% Similarity=0.254 Sum_probs=36.3
Q ss_pred HHHHHHhhhHHHHcCCCEEEeCCCCCCCCCCCCCcccCCCcCCCCCCHHHHHHHHHHHhhCCCEEEE
Q 021281 42 WRNLERKVPDISKSGFTSVWLPPATHSFAPEGYLPQNLYSLNSSYGSEHLLKALLHKMKQHKVRAMA 108 (314)
Q Consensus 42 ~~gi~~~ldyl~~lG~~~I~l~Pi~~~~~~~gY~~~d~~~id~~~Gt~~df~~lv~~ah~~Gi~Vil 108 (314)
=+.+..++..|++.|+++|.|+.=.....+++. -|. .+.++++|++.- |++||.
T Consensus 51 g~~~~~~~~~l~~~~~d~IHlssC~~~~~~~~~--------CP~---~~~~~~~I~~~~--gi~VV~ 104 (107)
T PF08821_consen 51 GRKLVRRIKKLKKNGADVIHLSSCMVKGNPHGP--------CPH---IDEIKKIIEEKF--GIEVVE 104 (107)
T ss_pred hhHHHHHHHHHHHCCCCEEEEcCCEecCCCCCC--------CCC---HHHHHHHHHHHh--CCCEee
Confidence 478888999999999999999876544332321 122 455555555443 998875
No 169
>TIGR00217 malQ 4-alpha-glucanotransferase. This enzyme is known as amylomaltase and disproportionating enzyme.
Probab=67.13 E-value=13 Score=37.52 Aligned_cols=46 Identities=17% Similarity=0.135 Sum_probs=28.2
Q ss_pred HHHHHHHHHHhCCCCEEEeccCCC------CC----------------HHHHHHHHHhhCC-CeEEEcccC
Q 021281 174 IIAWLRWLRNTVGFQDFRFDFARG------YS----------------AKYVKEYIEGARP-IFSVGEYWD 221 (314)
Q Consensus 174 l~~~~~~w~~~~gvDGfRlDaa~~------i~----------------~~f~~~~~~~~~~-~~~~gE~~~ 221 (314)
.++-++.-+ ..+|++|+|.+.. || .+++..+..+... ..+|||-..
T Consensus 294 w~~rlr~~~--~~~d~lRIDHf~Gf~r~w~IP~g~~ta~~G~wv~~Pg~~l~~~l~~e~~~~~~vIaEDLG 362 (513)
T TIGR00217 294 WIKRLGANM--QYADILRIDHFRGFVSLWWVPAGESTAFNGAWVHYPGDDFFNILANESKDNLKIIGEDLG 362 (513)
T ss_pred HHHHHHHHH--HhCCeEEecchhhhceeeeecCCCCCCCCCeeEeCCHHHHHHHHHHHcCCCCcEEeeeCC
Confidence 334444444 4567799999754 22 3566666666654 677999543
No 170
>PRK14012 cysteine desulfurase; Provisional
Probab=66.81 E-value=26 Score=33.68 Aligned_cols=82 Identities=12% Similarity=0.230 Sum_probs=51.1
Q ss_pred cCCceeEEEEeeCCCCCCchHHHHHHhhhHHHHcCCCEEEeCCCCCCCC----------CCCCCcccCCCcCCCCCCHHH
Q 021281 22 RNGREILFQGFNWESCKHDWWRNLERKVPDISKSGFTSVWLPPATHSFA----------PEGYLPQNLYSLNSSYGSEHL 91 (314)
Q Consensus 22 ~~~~~~i~q~F~w~~~~~g~~~gi~~~ldyl~~lG~~~I~l~Pi~~~~~----------~~gY~~~d~~~id~~~Gt~~d 91 (314)
.+|+.||+.-.+ +......+..++..|++.+++.+- +... ...-...-...++...|...+
T Consensus 92 ~~gd~Vi~~~~~--------~~s~~~~~~~~~~~g~~~~~v~~~-~~g~~d~~~l~~~i~~~t~lv~~~~~~n~tG~~~~ 162 (404)
T PRK14012 92 KKGKHIITSKTE--------HKAVLDTCRQLEREGFEVTYLDPQ-SNGIIDLEKLEAAMRDDTILVSIMHVNNEIGVIQD 162 (404)
T ss_pred CCCCEEEEecCc--------cHHHHHHHHHHHhCCCEEEEEccC-CCCcCCHHHHHHhcCCCCEEEEEECcCCCccchhh
Confidence 346677775443 344444445566779988887432 1110 011111112334455789999
Q ss_pred HHHHHHHHhhCCCEEEEeeee
Q 021281 92 LKALLHKMKQHKVRAMADIVI 112 (314)
Q Consensus 92 f~~lv~~ah~~Gi~VilD~V~ 112 (314)
++++.+.||++|+.|++|-+-
T Consensus 163 ~~~I~~la~~~g~~vivD~a~ 183 (404)
T PRK14012 163 IAAIGEICRERGIIFHVDAAQ 183 (404)
T ss_pred HHHHHHHHHHcCCEEEEEcch
Confidence 999999999999999999874
No 171
>PLN02651 cysteine desulfurase
Probab=66.57 E-value=19 Score=33.98 Aligned_cols=82 Identities=11% Similarity=0.156 Sum_probs=49.8
Q ss_pred cCCceeEEEEeeCCCCCCchHHHHHHhhhHHHHcCCCEEEeCCCCCCCC----------CCCCCcccCCCcCCCCCCHHH
Q 021281 22 RNGREILFQGFNWESCKHDWWRNLERKVPDISKSGFTSVWLPPATHSFA----------PEGYLPQNLYSLNSSYGSEHL 91 (314)
Q Consensus 22 ~~~~~~i~q~F~w~~~~~g~~~gi~~~ldyl~~lG~~~I~l~Pi~~~~~----------~~gY~~~d~~~id~~~Gt~~d 91 (314)
.+|+.||+.-.+ +......+..++..|+..+.+.. -+... .......-...++..-|...+
T Consensus 86 ~~g~~vl~~~~~--------h~s~~~~~~~~~~~g~~v~~v~~-~~~~~~d~~~l~~~i~~~t~lv~v~~~~n~tG~~~~ 156 (364)
T PLN02651 86 DKKKHVITTQTE--------HKCVLDSCRHLQQEGFEVTYLPV-KSDGLVDLDELAAAIRPDTALVSVMAVNNEIGVIQP 156 (364)
T ss_pred CCCCEEEEcccc--------cHHHHHHHHHHHhcCCEEEEEcc-CCCCcCCHHHHHHhcCCCcEEEEEECCCCCceeccc
Confidence 345556654433 23333344456678988777643 11110 111222223344566788999
Q ss_pred HHHHHHHHhhCCCEEEEeeee
Q 021281 92 LKALLHKMKQHKVRAMADIVI 112 (314)
Q Consensus 92 f~~lv~~ah~~Gi~VilD~V~ 112 (314)
++++.+.||++|+.+++|.+-
T Consensus 157 l~~I~~~~~~~g~~~~vD~a~ 177 (364)
T PLN02651 157 VEEIGELCREKKVLFHTDAAQ 177 (364)
T ss_pred HHHHHHHHHHcCCEEEEEcch
Confidence 999999999999999999874
No 172
>PLN02801 beta-amylase
Probab=66.44 E-value=24 Score=35.27 Aligned_cols=65 Identities=15% Similarity=0.235 Sum_probs=49.7
Q ss_pred hHHHHHHhhhHHHHcCCCEEEeCC---CCCCCCCCCCCcccCCCcCCCCCCHHHHHHHHHHHhhCCCEEEEeeeeccccC
Q 021281 41 WWRNLERKVPDISKSGFTSVWLPP---ATHSFAPEGYLPQNLYSLNSSYGSEHLLKALLHKMKQHKVRAMADIVINHRVG 117 (314)
Q Consensus 41 ~~~gi~~~ldyl~~lG~~~I~l~P---i~~~~~~~gY~~~d~~~id~~~Gt~~df~~lv~~ah~~Gi~VilD~V~NH~~~ 117 (314)
+-+++...|..||.+||++|-+-= |.+..+...| .....++|++-+++.|+||..=+-+..+|.
T Consensus 35 ~~~~l~~~L~~LK~~GVdGVmvDVWWGiVE~~~P~~Y-------------dWsgY~~l~~mvr~~GLKlq~vmSFHqCGG 101 (517)
T PLN02801 35 DEEGLEKQLKRLKEAGVDGVMVDVWWGIVESKGPKQY-------------DWSAYRSLFELVQSFGLKIQAIMSFHQCGG 101 (517)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEeeeeeeeccCCCCcc-------------CcHHHHHHHHHHHHcCCeEEEEEEecccCC
Confidence 578999999999999999997532 2222223333 356788999999999999999888888776
Q ss_pred C
Q 021281 118 T 118 (314)
Q Consensus 118 ~ 118 (314)
.
T Consensus 102 N 102 (517)
T PLN02801 102 N 102 (517)
T ss_pred C
Confidence 3
No 173
>PRK05660 HemN family oxidoreductase; Provisional
Probab=66.44 E-value=14 Score=35.57 Aligned_cols=63 Identities=10% Similarity=0.094 Sum_probs=41.3
Q ss_pred HhhhHHHHcCCCEEEeCCCCCCCCCCCCCcccCCCcCCCCCCHHHHHHHHHHHhhCCCEE-EEeeeeccccC
Q 021281 47 RKVPDISKSGFTSVWLPPATHSFAPEGYLPQNLYSLNSSYGSEHLLKALLHKMKQHKVRA-MADIVINHRVG 117 (314)
Q Consensus 47 ~~ldyl~~lG~~~I~l~Pi~~~~~~~gY~~~d~~~id~~~Gt~~df~~lv~~ah~~Gi~V-ilD~V~NH~~~ 117 (314)
++|..|+++||+.|.|.. + ..++.-+..+. +..+.++..+.++.|++.|++. -+|+.++.-+.
T Consensus 108 e~l~~Lk~~Gv~risiGv--q-----S~~~~~L~~l~-r~~~~~~~~~ai~~~~~~G~~~v~~dli~Glpgq 171 (378)
T PRK05660 108 DRFVGYQRAGVNRISIGV--Q-----SFSEEKLKRLG-RIHGPDEAKRAAKLAQGLGLRSFNLDLMHGLPDQ 171 (378)
T ss_pred HHHHHHHHcCCCEEEecc--C-----cCCHHHHHHhC-CCCCHHHHHHHHHHHHHcCCCeEEEEeecCCCCC
Confidence 455566666776666653 1 12222222333 4468899999999999999986 49999886553
No 174
>PF01212 Beta_elim_lyase: Beta-eliminating lyase; InterPro: IPR001597 This domain is found in many tryptophanases (tryptophan indole-lyase, TNase), tyrosine phenol-lyases (TPL) and threonine aldolases. It is involved in the degradation of amino acids. The glycine cleavage system is composed of four proteins: P, T, L and H. In Bacillus subtilis, the P 'protein' is an heterodimer of two subunits. The glycine cleavage system catalyses the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; GO: 0016829 lyase activity, 0006520 cellular amino acid metabolic process; PDB: 3PJ0_C 2C44_C 2V0Y_A 2OQX_A 2V1P_A 1AX4_B 3LWS_A 1C7G_A 1V72_A 2YHK_B ....
Probab=66.37 E-value=5.5 Score=36.94 Aligned_cols=24 Identities=21% Similarity=0.164 Sum_probs=20.6
Q ss_pred CHHHHHHHHHHHhhCCCEEEEeee
Q 021281 88 SEHLLKALLHKMKQHKVRAMADIV 111 (314)
Q Consensus 88 t~~df~~lv~~ah~~Gi~VilD~V 111 (314)
++++++++.+-||++||+|.||..
T Consensus 143 s~~el~ai~~~a~~~gl~lhmDGA 166 (290)
T PF01212_consen 143 SLEELRAISELAREHGLPLHMDGA 166 (290)
T ss_dssp -HHHHHHHHHHHHHHT-EEEEEET
T ss_pred CHHHHHHHHHHHHhCceEEEEehh
Confidence 579999999999999999999973
No 175
>PRK15452 putative protease; Provisional
Probab=66.30 E-value=17 Score=35.92 Aligned_cols=48 Identities=6% Similarity=-0.025 Sum_probs=32.5
Q ss_pred hhHHHHcCCCEEEeCCC-CCCCCCCCCCcccCCCcCCCCCCHHHHHHHHHHHhhCCCEEEE
Q 021281 49 VPDISKSGFTSVWLPPA-THSFAPEGYLPQNLYSLNSSYGSEHLLKALLHKMKQHKVRAMA 108 (314)
Q Consensus 49 ldyl~~lG~~~I~l~Pi-~~~~~~~gY~~~d~~~id~~~Gt~~df~~lv~~ah~~Gi~Vil 108 (314)
|...-+.|.++||+..- +.... + ..+ | +.+++++.|+.||++|.+|++
T Consensus 16 l~aAi~~GADaVY~G~~~~~~R~---~-~~~-------f-~~edl~eav~~ah~~g~kvyv 64 (443)
T PRK15452 16 MRYAFAYGADAVYAGQPRYSLRV---R-NNE-------F-NHENLALGINEAHALGKKFYV 64 (443)
T ss_pred HHHHHHCCCCEEEECCCccchhh---h-ccC-------C-CHHHHHHHHHHHHHcCCEEEE
Confidence 33444779999999542 21110 0 111 1 568999999999999999987
No 176
>TIGR01233 lacG 6-phospho-beta-galactosidase. This enzyme is part of the tagatose-6-phosphate pathway of galactose-6-phosphate degradation.
Probab=66.24 E-value=44 Score=33.22 Aligned_cols=63 Identities=13% Similarity=0.256 Sum_probs=43.8
Q ss_pred hHHHHHHhhhHHHHcCCCEEEeCCCCCCCCCCCCCcccCCCcCCCCCCHHHHHHHHHHHhhCCCEEEEee
Q 021281 41 WWRNLERKVPDISKSGFTSVWLPPATHSFAPEGYLPQNLYSLNSSYGSEHLLKALLHKMKQHKVRAMADI 110 (314)
Q Consensus 41 ~~~gi~~~ldyl~~lG~~~I~l~Pi~~~~~~~gY~~~d~~~id~~~Gt~~df~~lv~~ah~~Gi~VilD~ 110 (314)
.+....+-+.-+++||+++-=++=-....-+.|.. .++ --..+=.++||++|.++||+.|+-+
T Consensus 51 ~yhry~eDi~L~~~lG~~~yRfSIsWsRI~P~g~~-----~~N--~~gl~~Y~~lid~l~~~GI~P~VTL 113 (467)
T TIGR01233 51 FYHKYPVDLELAEEYGVNGIRISIAWSRIFPTGYG-----EVN--EKGVEFYHKLFAECHKRHVEPFVTL 113 (467)
T ss_pred hhhhHHHHHHHHHHcCCCEEEEecchhhccCCCCC-----CcC--HHHHHHHHHHHHHHHHcCCEEEEec
Confidence 78999999999999999998765332222222321 121 1134558899999999999999843
No 177
>COG1306 Uncharacterized conserved protein [Function unknown]
Probab=66.00 E-value=34 Score=31.97 Aligned_cols=134 Identities=17% Similarity=0.241 Sum_probs=74.4
Q ss_pred HHHHHHhhhHHHHcCCCEEEeCCCCCCC-CCCCCCcccCCCcCCCCCC---HHHHHHHHHHHhhCCCEEEEeeeeccccC
Q 021281 42 WRNLERKVPDISKSGFTSVWLPPATHSF-APEGYLPQNLYSLNSSYGS---EHLLKALLHKMKQHKVRAMADIVINHRVG 117 (314)
Q Consensus 42 ~~gi~~~ldyl~~lG~~~I~l~Pi~~~~-~~~gY~~~d~~~id~~~Gt---~~df~~lv~~ah~~Gi~VilD~V~NH~~~ 117 (314)
=+.+.+....|++-|+|++-+-= +.. +.-.|.-.| .+....|+ -.|.+-+|++|+++||.+|.=+|.=--+.
T Consensus 76 kk~~de~fk~ikdn~~Na~ViD~--Kdd~G~lty~s~d--~~~~~~~sv~~f~Di~~~iKkaKe~giY~IARiVvFKD~~ 151 (400)
T COG1306 76 KKRLDELFKLIKDNNINAFVIDV--KDDYGELTYPSSD--EINKYTKSVNKFKDIEPVIKKAKENGIYAIARIVVFKDTI 151 (400)
T ss_pred hhHHHHHHHHHHhCCCCEEEEEe--cCCCccEeccccc--hhhhhhhccccccccHHHHHHHHhcCeEEEEEEEEeeeee
Confidence 35567777888888888886521 111 111233333 22323332 35788999999999999999877532111
Q ss_pred CCCCCCCcCcCCCC----CCCCCCCCCcccCCCCCc-cccCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCCCCEEEe
Q 021281 118 TTQGHGGKYNRYDG----IPLSWDEHAVTSCTGGLG-NGSTGDNFHGVPNIDHTQHFVRKDIIAWLRWLRNTVGFQDFRF 192 (314)
Q Consensus 118 ~~~~~~~~y~~f~~----~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~dln~~~p~v~~~l~~~~~~w~~~~gvDGfRl 192 (314)
-. .|++|.- ....|.. +.++.- .+..+..| .+--++.+++|=+.+++..+ ++|+|-+.+
T Consensus 152 l~-----~~n~fk~av~~~gKpw~~-----~~ngaLrKe~~~ehW-----Vd~y~~~~WeYNvtIAKEa~-~fGfdEiQF 215 (400)
T COG1306 152 LA-----KENPFKIAVYKDGKPWKA-----FTNGALRKESDGEHW-----VDAYDKNLWEYNVTIAKEAA-KFGFDEIQF 215 (400)
T ss_pred EE-----eecCceEEEEcCCCcchh-----hhcccccccccceee-----ecccchhhhhhhHHHHHHHH-HcCccceee
Confidence 10 1111110 0011110 001000 00000111 34457899999999999998 999999999
Q ss_pred ccC
Q 021281 193 DFA 195 (314)
Q Consensus 193 Daa 195 (314)
|-+
T Consensus 216 DYI 218 (400)
T COG1306 216 DYI 218 (400)
T ss_pred eEE
Confidence 875
No 178
>cd07937 DRE_TIM_PC_TC_5S Pyruvate carboxylase and Transcarboxylase 5S, carboxyltransferase domain. This family includes the carboxyltransferase domains of pyruvate carboxylase (PC) and the transcarboxylase (TC) 5S subunit. Transcarboxylase 5S is a cobalt-dependent metalloenzyme subunit of the biotin-dependent transcarboxylase multienzyme complex. Transcarboxylase 5S transfers carbon dioxide from the 1.3S biotin to pyruvate in the second of two carboxylation reactions catalyzed by TC. The first reaction involves the transfer of carbon dioxide from methylmalonyl-CoA to the 1.3S biotin, and is catalyzed by the 12S subunit. These two steps allow a carboxylate group to be transferred from oxaloacetate to propionyl-CoA to yield pyruvate and methylmalonyl-CoA. The catalytic domain of transcarboxylase 5S has a canonical TIM-barrel fold with a large C-terminal extension that forms a funnel leading to the active site. Transcarboxylase 5S forms a homodimer and there are six dimers per complex
Probab=65.79 E-value=1.1e+02 Score=28.01 Aligned_cols=95 Identities=13% Similarity=0.090 Sum_probs=61.0
Q ss_pred HHHHhhhHHHHcCCCEEEeC-CCCCCCCCCCCCcccCCCcCCCCCCHHHHHHHHHHHhhCCCEEEEeeeeccccCCCCCC
Q 021281 44 NLERKVPDISKSGFTSVWLP-PATHSFAPEGYLPQNLYSLNSSYGSEHLLKALLHKMKQHKVRAMADIVINHRVGTTQGH 122 (314)
Q Consensus 44 gi~~~ldyl~~lG~~~I~l~-Pi~~~~~~~gY~~~d~~~id~~~Gt~~df~~lv~~ah~~Gi~VilD~V~NH~~~~~~~~ 122 (314)
...+-++...+.|++.|.+. |+.+ .+.++..|+.++++|++|.+-+.+-..+.
T Consensus 92 ~~~~di~~~~~~g~~~iri~~~~~~---------------------~~~~~~~i~~ak~~G~~v~~~i~~~~~~~----- 145 (275)
T cd07937 92 VVELFVEKAAKNGIDIFRIFDALND---------------------VRNLEVAIKAVKKAGKHVEGAICYTGSPV----- 145 (275)
T ss_pred HHHHHHHHHHHcCCCEEEEeecCCh---------------------HHHHHHHHHHHHHCCCeEEEEEEecCCCC-----
Confidence 35566666777777777652 1111 57899999999999998886332110000
Q ss_pred CCcCcCCCCCCCCCCCCCcccCCCCCccccCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCCCCEEEe-ccCCCCCHH
Q 021281 123 GGKYNRYDGIPLSWDEHAVTSCTGGLGNGSTGDNFHGVPNIDHTQHFVRKDIIAWLRWLRNTVGFQDFRF-DFARGYSAK 201 (314)
Q Consensus 123 ~~~y~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~~p~v~~~l~~~~~~w~~~~gvDGfRl-Daa~~i~~~ 201 (314)
.-.+++.+.++... +.|+|.+++ |.+-...++
T Consensus 146 ----------------------------------------------~~~~~~~~~~~~~~-~~Ga~~i~l~DT~G~~~P~ 178 (275)
T cd07937 146 ----------------------------------------------HTLEYYVKLAKELE-DMGADSICIKDMAGLLTPY 178 (275)
T ss_pred ----------------------------------------------CCHHHHHHHHHHHH-HcCCCEEEEcCCCCCCCHH
Confidence 01235555566665 889998887 667777777
Q ss_pred HHHHHHHhhC
Q 021281 202 YVKEYIEGAR 211 (314)
Q Consensus 202 f~~~~~~~~~ 211 (314)
.+.+++..++
T Consensus 179 ~v~~lv~~l~ 188 (275)
T cd07937 179 AAYELVKALK 188 (275)
T ss_pred HHHHHHHHHH
Confidence 7777777665
No 179
>TIGR00510 lipA lipoate synthase. The family shows strong sequence conservation.
Probab=65.68 E-value=28 Score=32.51 Aligned_cols=80 Identities=13% Similarity=0.052 Sum_probs=57.9
Q ss_pred ccccCccccCCceeEEEEeeCCCCCCchHHHHHHhhhHHHHcCCCEEEeCCCCCCCCCCCCCcccCCCcCCCCCCHHHHH
Q 021281 14 QTDLGAVIRNGREILFQGFNWESCKHDWWRNLERKVPDISKSGFTSVWLPPATHSFAPEGYLPQNLYSLNSSYGSEHLLK 93 (314)
Q Consensus 14 ~~~~~~~~~~~~~~i~q~F~w~~~~~g~~~gi~~~ldyl~~lG~~~I~l~Pi~~~~~~~gY~~~d~~~id~~~Gt~~df~ 93 (314)
+-.+.|.+.-+.++|+ +|.- +.+.+.+.|+.|+++|++.|-+.+.+... ...+.+. +|=++++|.
T Consensus 200 ak~~~pgi~~~TgiIV-GlGE------Teee~~etl~~Lrelg~d~v~igqYl~p~-~~~~~v~-------~~~~p~~f~ 264 (302)
T TIGR00510 200 AKEYLPNLPTKSGIMV-GLGE------TNEEIKQTLKDLRDHGVTMVTLGQYLRPS-RRHLPVK-------RYVSPEEFD 264 (302)
T ss_pred HHHhCCCCeecceEEE-ECCC------CHHHHHHHHHHHHhcCCCEEEeecccCCC-CCCCccc-------cCCCHHHHH
Confidence 3445566665544444 5543 48999999999999999999988876542 2334343 344789999
Q ss_pred HHHHHHhhCCCEEEE
Q 021281 94 ALLHKMKQHKVRAMA 108 (314)
Q Consensus 94 ~lv~~ah~~Gi~Vil 108 (314)
.+-+.|-+.|.+-+.
T Consensus 265 ~~~~~a~~~gf~~v~ 279 (302)
T TIGR00510 265 YYRSVALEMGFLHAA 279 (302)
T ss_pred HHHHHHHHcCChheE
Confidence 999999999988766
No 180
>TIGR02006 IscS cysteine desulfurase IscS. This model represents IscS, one of several cysteine desulfurases from a larger protein family designated (misleadingly, in this case) class V aminotransferases. IscS is one of at least 6 enzymes characteristic of the IscSUA-hscAB-fsx system of iron-sulfur cluster assembly. Scoring almost as well as proteobacterial sequences included in the model are mitochondrial cysteine desulfurases, apparently from an analogous system in eukaryotes. The sulfur, taken from cysteine, may be used in other systems as well, such as tRNA base modification and biosynthesis of other cofactors.
Probab=65.58 E-value=18 Score=34.79 Aligned_cols=81 Identities=16% Similarity=0.245 Sum_probs=51.2
Q ss_pred CCceeEEEEeeCCCCCCchHHHHHHhhhHHHHcCCCEEEeCCCCCCC----------CCCCCCcccCCCcCCCCCCHHHH
Q 021281 23 NGREILFQGFNWESCKHDWWRNLERKVPDISKSGFTSVWLPPATHSF----------APEGYLPQNLYSLNSSYGSEHLL 92 (314)
Q Consensus 23 ~~~~~i~q~F~w~~~~~g~~~gi~~~ldyl~~lG~~~I~l~Pi~~~~----------~~~gY~~~d~~~id~~~Gt~~df 92 (314)
+|+.||+...+ +..+..-+..++..|+..+++.+- +.. -.......-...++...|...++
T Consensus 91 ~g~~Vi~~~~~--------h~s~~~~~~~~~~~g~~v~~v~~~-~~~~~d~~~l~~~l~~~~~lv~v~~~~n~tG~~~~~ 161 (402)
T TIGR02006 91 KGNHIITSKTE--------HKAVLDTCRYLEREGFEVTYLPPK-SNGLIDLEELKAAIRDDTILVSIMHVNNEIGVIQDI 161 (402)
T ss_pred CCCEEEECCCc--------cHHHHHHHHHHHhcCCEEEEEccC-CCCcCCHHHHHHhcCCCCEEEEEECCCcCceecccH
Confidence 45556555333 444444455667789988887532 111 01112222233445567888999
Q ss_pred HHHHHHHhhCCCEEEEeeee
Q 021281 93 KALLHKMKQHKVRAMADIVI 112 (314)
Q Consensus 93 ~~lv~~ah~~Gi~VilD~V~ 112 (314)
+++.+.||++|+.|++|-+-
T Consensus 162 ~~I~~l~~~~g~~livD~a~ 181 (402)
T TIGR02006 162 AAIGEICRERKVFFHVDAAQ 181 (402)
T ss_pred HHHHHHHHHcCCEEEEEcch
Confidence 99999999999999999984
No 181
>PRK01278 argD acetylornithine transaminase protein; Provisional
Probab=65.36 E-value=19 Score=34.38 Aligned_cols=60 Identities=15% Similarity=0.162 Sum_probs=41.8
Q ss_pred hHHHHHHhhhHHHHcCCCEEEeCCCCCCCCCCCCCcccCCCcCCCCCCHHHHHHHHHHHhhCCCEEEEeeeeccccC
Q 021281 41 WWRNLERKVPDISKSGFTSVWLPPATHSFAPEGYLPQNLYSLNSSYGSEHLLKALLHKMKQHKVRAMADIVINHRVG 117 (314)
Q Consensus 41 ~~~gi~~~ldyl~~lG~~~I~l~Pi~~~~~~~gY~~~d~~~id~~~Gt~~df~~lv~~ah~~Gi~VilD~V~NH~~~ 117 (314)
+.+.+++.+. + .+.+|.+.|++.. .|..+. +.+.+++|.+-|+++|+-+|+|=|....+.
T Consensus 164 d~~~l~~~l~---~-~~~avivep~~~~---~G~~~~----------~~~~l~~l~~l~~~~g~~lI~DEv~~g~g~ 223 (389)
T PRK01278 164 DIEALKAAIT---P-NTAAILIEPIQGE---GGIRPA----------PDEFLKGLRQLCDENGLLLIFDEVQCGMGR 223 (389)
T ss_pred CHHHHHHhhC---C-CeEEEEEecccCC---CCCcCC----------CHHHHHHHHHHHHHcCCEEEEeccccCCCc
Confidence 4555555443 1 4778899988533 242221 368999999999999999999999875543
No 182
>PRK08446 coproporphyrinogen III oxidase; Provisional
Probab=65.30 E-value=14 Score=35.09 Aligned_cols=62 Identities=10% Similarity=0.154 Sum_probs=38.9
Q ss_pred HhhhHHHHcCCCEEEeCCCCCCCCCCCCCcccCCCcCCCCCCHHHHHHHHHHHhhCCCE-EEEeeeecccc
Q 021281 47 RKVPDISKSGFTSVWLPPATHSFAPEGYLPQNLYSLNSSYGSEHLLKALLHKMKQHKVR-AMADIVINHRV 116 (314)
Q Consensus 47 ~~ldyl~~lG~~~I~l~Pi~~~~~~~gY~~~d~~~id~~~Gt~~df~~lv~~ah~~Gi~-VilD~V~NH~~ 116 (314)
++|..++++||+.|-|.. + ..+..-...+ .|-.+.++..+.|+.+++.|+. |-+|+.++--+
T Consensus 99 e~l~~l~~~GvnRiSiGv--Q-----S~~~~~L~~l-gR~~~~~~~~~ai~~lr~~g~~~v~iDli~GlPg 161 (350)
T PRK08446 99 AWLKGMKNLGVNRISFGV--Q-----SFNEDKLKFL-GRIHSQKQIIKAIENAKKAGFENISIDLIYDTPL 161 (350)
T ss_pred HHHHHHHHcCCCEEEEec--c-----cCCHHHHHHc-CCCCCHHHHHHHHHHHHHcCCCEEEEEeecCCCC
Confidence 455555555555555432 1 1111112233 4555789999999999999997 66999998654
No 183
>PRK13347 coproporphyrinogen III oxidase; Provisional
Probab=65.14 E-value=16 Score=36.14 Aligned_cols=34 Identities=6% Similarity=0.090 Sum_probs=28.1
Q ss_pred CCCCCHHHHHHHHHHHhhCCCE-EEEeeeeccccC
Q 021281 84 SSYGSEHLLKALLHKMKQHKVR-AMADIVINHRVG 117 (314)
Q Consensus 84 ~~~Gt~~df~~lv~~ah~~Gi~-VilD~V~NH~~~ 117 (314)
.+-.+.++..+.++.+++.|++ |-+|+.++.-+.
T Consensus 182 ~R~~~~~~~~~ai~~lr~~G~~~v~~dli~GlPgq 216 (453)
T PRK13347 182 NRIQPEEMVARAVELLRAAGFESINFDLIYGLPHQ 216 (453)
T ss_pred CCCCCHHHHHHHHHHHHhcCCCcEEEeEEEeCCCC
Confidence 3446889999999999999997 889998886544
No 184
>cd06543 GH18_PF-ChiA-like PF-ChiA is an uncharacterized chitinase found in the hyperthermophilic archaeon Pyrococcus furiosus with a glycosyl hydrolase family 18 (GH18) catalytic domain as well as a cellulose-binding domain. Members of this domain family are found not only in archaea but also in eukaryotes and prokaryotes. PF-ChiA exhibits hydrolytic activity toward both colloidal and crystalline (beta/alpha) chitins at high temperature.
Probab=65.04 E-value=51 Score=30.63 Aligned_cols=96 Identities=13% Similarity=0.158 Sum_probs=55.5
Q ss_pred hHHHHcCCCEEEeCCCCCCCCCCCCCcccCCCcCCCCCCHHHHHHHHHHHhhCCCEEEEeeeeccccCCCCCCCCcCcCC
Q 021281 50 PDISKSGFTSVWLPPATHSFAPEGYLPQNLYSLNSSYGSEHLLKALLHKMKQHKVRAMADIVINHRVGTTQGHGGKYNRY 129 (314)
Q Consensus 50 dyl~~lG~~~I~l~Pi~~~~~~~gY~~~d~~~id~~~Gt~~df~~lv~~ah~~Gi~VilD~V~NH~~~~~~~~~~~y~~f 129 (314)
++.++.|+++|-|.=+.... +..+. ..-.....+...+..-|++|+++|.+||+-+ |...
T Consensus 19 ~~~~~~g~~~v~lAFi~~~~---~~~~~--w~g~~~~~~~~~~~~~i~~lk~~G~kViiS~-----GG~~---------- 78 (294)
T cd06543 19 TYAAATGVKAFTLAFIVASG---GCKPA--WGGSYPLDQGGWIKSDIAALRAAGGDVIVSF-----GGAS---------- 78 (294)
T ss_pred HHHHHcCCCEEEEEEEEcCC---CCccc--CCCCCCcccchhHHHHHHHHHHcCCeEEEEe-----cCCC----------
Confidence 56678999999875222111 11110 0000111245678889999999999999922 1110
Q ss_pred CCCCCCCCCCCcccCCCCCccccCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCCCCEEEeccCC
Q 021281 130 DGIPLSWDEHAVTSCTGGLGNGSTGDNFHGVPNIDHTQHFVRKDIIAWLRWLRNTVGFQDFRFDFAR 196 (314)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~~p~v~~~l~~~~~~w~~~~gvDGfRlDaa~ 196 (314)
+ ..+.. +..-++.+.+.+...++.+|+||+-+|-=.
T Consensus 79 -g--~~~~~----------------------------~~~~~~~~~~a~~~~i~~y~~dgiDfDiE~ 114 (294)
T cd06543 79 -G--TPLAT----------------------------SCTSADQLAAAYQKVIDAYGLTHLDFDIEG 114 (294)
T ss_pred -C--Ccccc----------------------------CcccHHHHHHHHHHHHHHhCCCeEEEeccC
Confidence 0 00000 234566666666677789999999998644
No 185
>TIGR03471 HpnJ hopanoid biosynthesis associated radical SAM protein HpnJ. One of the well-described hopanoid intermediates is bacteriohopanetetrol. In the conversion from hopene several reactions must occur in the side chain for which a radical mechanism might be reasonable. These include the four (presumably anaerobic) hydroxylations and a methyl shift.
Probab=64.69 E-value=17 Score=35.91 Aligned_cols=29 Identities=0% Similarity=0.117 Sum_probs=25.4
Q ss_pred CHHHHHHHHHHHhhCCCEEEEeeeecccc
Q 021281 88 SEHLLKALLHKMKQHKVRAMADIVINHRV 116 (314)
Q Consensus 88 t~~df~~lv~~ah~~Gi~VilD~V~NH~~ 116 (314)
+.++..+.++.|++.||.|..++++..-+
T Consensus 321 ~~~~~~~~i~~~~~~Gi~v~~~~IiGlPg 349 (472)
T TIGR03471 321 TVEIARRFTRDCHKLGIKVHGTFILGLPG 349 (472)
T ss_pred CHHHHHHHHHHHHHCCCeEEEEEEEeCCC
Confidence 67889999999999999999999987533
No 186
>cd02933 OYE_like_FMN Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include 12-oxophytodienoate reductase, pentaerythritol tetranitrate reductase, morphinone reductase, and related enzymes.
Probab=64.67 E-value=80 Score=29.90 Aligned_cols=29 Identities=7% Similarity=-0.014 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHhhCCCEEEEeeeeccccCCC
Q 021281 89 EHLLKALLHKMKQHKVRAMADIVINHRVGTT 119 (314)
Q Consensus 89 ~~df~~lv~~ah~~Gi~VilD~V~NH~~~~~ 119 (314)
.+.+++|++++|+.|-++++-+ +|.|...
T Consensus 76 i~~lr~la~~vh~~ga~~~~QL--~H~G~~~ 104 (338)
T cd02933 76 VEGWKKVTDAVHAKGGKIFLQL--WHVGRVS 104 (338)
T ss_pred HHHHHHHHHHHHhcCCeEEEEc--ccCccCC
Confidence 4679999999999999999854 6877643
No 187
>PLN02411 12-oxophytodienoate reductase
Probab=64.19 E-value=56 Score=31.66 Aligned_cols=29 Identities=7% Similarity=0.052 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHhhCCCEEEEeeeeccccCCC
Q 021281 89 EHLLKALLHKMKQHKVRAMADIVINHRVGTT 119 (314)
Q Consensus 89 ~~df~~lv~~ah~~Gi~VilD~V~NH~~~~~ 119 (314)
.+.+|+|++++|++|-++++-+ +|.|...
T Consensus 86 i~~~~~l~~avH~~G~~i~~QL--~H~Gr~~ 114 (391)
T PLN02411 86 VEAWKKVVDAVHAKGSIIFCQL--WHVGRAS 114 (391)
T ss_pred HHHHHHHHHHHHhcCCEEEEec--cCCCCCC
Confidence 4679999999999999998866 6877654
No 188
>PLN02905 beta-amylase
Probab=64.06 E-value=27 Score=35.76 Aligned_cols=65 Identities=14% Similarity=0.121 Sum_probs=50.4
Q ss_pred hHHHHHHhhhHHHHcCCCEEEeCCC---CCCCCCCCCCcccCCCcCCCCCCHHHHHHHHHHHhhCCCEEEEeeeeccccC
Q 021281 41 WWRNLERKVPDISKSGFTSVWLPPA---THSFAPEGYLPQNLYSLNSSYGSEHLLKALLHKMKQHKVRAMADIVINHRVG 117 (314)
Q Consensus 41 ~~~gi~~~ldyl~~lG~~~I~l~Pi---~~~~~~~gY~~~d~~~id~~~Gt~~df~~lv~~ah~~Gi~VilD~V~NH~~~ 117 (314)
+.+.+...|..||.+||++|-+-=. .+..+...| .....++|++-+++.||||..=+-+..|+.
T Consensus 284 ~~~al~a~L~aLK~aGVdGVmvDVWWGiVE~~gP~~Y-------------dWsgY~~L~~mvr~~GLKlqvVMSFHqCGG 350 (702)
T PLN02905 284 DPDGLLKQLRILKSINVDGVKVDCWWGIVEAHAPQEY-------------NWNGYKRLFQMVRELKLKLQVVMSFHECGG 350 (702)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEeeeeeeeecCCCCcC-------------CcHHHHHHHHHHHHcCCeEEEEEEecccCC
Confidence 8899999999999999999975322 222223333 356788999999999999999888888776
Q ss_pred C
Q 021281 118 T 118 (314)
Q Consensus 118 ~ 118 (314)
.
T Consensus 351 N 351 (702)
T PLN02905 351 N 351 (702)
T ss_pred C
Confidence 4
No 189
>TIGR01162 purE phosphoribosylaminoimidazole carboxylase, PurE protein. Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. This model represents PurK, an N5-CAIR mutase.
Probab=63.71 E-value=18 Score=30.42 Aligned_cols=49 Identities=8% Similarity=0.158 Sum_probs=41.2
Q ss_pred hHHHHHHhhhHHHHcCCCEEEeCCCCCCCCCCCCCcccCCCcCCCCCCHHHHHHHHHHHhhCCCEEEE
Q 021281 41 WWRNLERKVPDISKSGFTSVWLPPATHSFAPEGYLPQNLYSLNSSYGSEHLLKALLHKMKQHKVRAMA 108 (314)
Q Consensus 41 ~~~gi~~~ldyl~~lG~~~I~l~Pi~~~~~~~gY~~~d~~~id~~~Gt~~df~~lv~~ah~~Gi~Vil 108 (314)
|+.-+++...-|+++|+. |++ .|-+..-+++.+.++++++.++|++||+
T Consensus 10 D~~~~~~a~~~L~~~gi~---------------~dv----~V~SaHRtp~~~~~~~~~a~~~g~~viI 58 (156)
T TIGR01162 10 DLPTMKKAADILEEFGIP---------------YEL----RVVSAHRTPELMLEYAKEAEERGIKVII 58 (156)
T ss_pred hHHHHHHHHHHHHHcCCC---------------eEE----EEECcccCHHHHHHHHHHHHHCCCeEEE
Confidence 789999999999999996 222 3556666899999999999999999987
No 190
>PRK13511 6-phospho-beta-galactosidase; Provisional
Probab=63.70 E-value=50 Score=32.85 Aligned_cols=63 Identities=13% Similarity=0.261 Sum_probs=44.4
Q ss_pred hHHHHHHhhhHHHHcCCCEEEeCCCCCCCCCCCCCcccCCCcCCCCCCHHHHHHHHHHHhhCCCEEEEee
Q 021281 41 WWRNLERKVPDISKSGFTSVWLPPATHSFAPEGYLPQNLYSLNSSYGSEHLLKALLHKMKQHKVRAMADI 110 (314)
Q Consensus 41 ~~~gi~~~ldyl~~lG~~~I~l~Pi~~~~~~~gY~~~d~~~id~~~Gt~~df~~lv~~ah~~Gi~VilD~ 110 (314)
.+....+-++-+++||+++-=++=-....-+.|.. .+| --..+=.++||++|.++||+.|+-+
T Consensus 52 ~Y~ry~eDi~L~~~lG~~~yRfSIsWsRI~P~G~g-----~vN--~~gl~~Y~~lid~l~~~GI~P~VTL 114 (469)
T PRK13511 52 FYHRYPEDLKLAEEFGVNGIRISIAWSRIFPDGYG-----EVN--PKGVEYYHRLFAECHKRHVEPFVTL 114 (469)
T ss_pred hhhhhHHHHHHHHHhCCCEEEeeccHhhcCcCCCC-----CcC--HHHHHHHHHHHHHHHHcCCEEEEEe
Confidence 78999999999999999998664322222122211 122 1235568899999999999999855
No 191
>PRK12928 lipoyl synthase; Provisional
Probab=63.63 E-value=32 Score=31.92 Aligned_cols=84 Identities=11% Similarity=0.094 Sum_probs=60.4
Q ss_pred ccccccCccccCCceeEEEEeeCCCCCCchHHHHHHhhhHHHHcCCCEEEeCCCCCCCCCCCCCcccCCCcCCCCCCHHH
Q 021281 12 NQQTDLGAVIRNGREILFQGFNWESCKHDWWRNLERKVPDISKSGFTSVWLPPATHSFAPEGYLPQNLYSLNSSYGSEHL 91 (314)
Q Consensus 12 ~~~~~~~~~~~~~~~~i~q~F~w~~~~~g~~~gi~~~ldyl~~lG~~~I~l~Pi~~~~~~~gY~~~d~~~id~~~Gt~~d 91 (314)
+.+-.++|.+.-...+|+ +|. . +.+.+.+.|+.|+++|++.|-+.|...... .-+.+ .+|=++++
T Consensus 195 ~~ak~~gp~i~~~s~iIv-G~G-E-----T~ed~~etl~~Lrel~~d~v~i~~Yl~p~~-~~~~v-------~~~~~~~~ 259 (290)
T PRK12928 195 ARAKELAPDIPTKSGLML-GLG-E-----TEDEVIETLRDLRAVGCDRLTIGQYLRPSL-AHLPV-------QRYWTPEE 259 (290)
T ss_pred HHHHHhCCCceecccEEE-eCC-C-----CHHHHHHHHHHHHhcCCCEEEEEcCCCCCc-cCCce-------eeccCHHH
Confidence 344556677776544444 664 3 599999999999999999999887654321 12222 35558999
Q ss_pred HHHHHHHHhhCCCEEEEee
Q 021281 92 LKALLHKMKQHKVRAMADI 110 (314)
Q Consensus 92 f~~lv~~ah~~Gi~VilD~ 110 (314)
|+.+-+.+.+.|.+-+.-.
T Consensus 260 f~~~~~~~~~~g~~~~~~~ 278 (290)
T PRK12928 260 FEALGQIARELGFSHVRSG 278 (290)
T ss_pred HHHHHHHHHHcCCceeEec
Confidence 9999999999999877643
No 192
>PRK05904 coproporphyrinogen III oxidase; Provisional
Probab=63.59 E-value=17 Score=34.72 Aligned_cols=63 Identities=11% Similarity=0.056 Sum_probs=39.9
Q ss_pred HhhhHHHHcCCCEEEeCCCCCCCCCCCCCcccCCCcCCCCCCHHHHHHHHHHHhhCCCE-EEEeeeeccccC
Q 021281 47 RKVPDISKSGFTSVWLPPATHSFAPEGYLPQNLYSLNSSYGSEHLLKALLHKMKQHKVR-AMADIVINHRVG 117 (314)
Q Consensus 47 ~~ldyl~~lG~~~I~l~Pi~~~~~~~gY~~~d~~~id~~~Gt~~df~~lv~~ah~~Gi~-VilD~V~NH~~~ 117 (314)
++|+.|+++|++.|.+.. ++ .+..-...+ .+-.+.++..+.|+.|++.|+. |-+|+.++.-+.
T Consensus 104 e~l~~lk~~G~nrisiGv--QS-----~~d~vL~~l-~R~~~~~~~~~ai~~lr~~G~~~v~~dlI~GlPgq 167 (353)
T PRK05904 104 SQINLLKKNKVNRISLGV--QS-----MNNNILKQL-NRTHTIQDSKEAINLLHKNGIYNISCDFLYCLPIL 167 (353)
T ss_pred HHHHHHHHcCCCEEEEec--cc-----CCHHHHHHc-CCCCCHHHHHHHHHHHHHcCCCcEEEEEeecCCCC
Confidence 455555666666655432 11 111111122 3345789999999999999998 899999986543
No 193
>PLN02803 beta-amylase
Probab=63.44 E-value=29 Score=34.89 Aligned_cols=65 Identities=12% Similarity=0.175 Sum_probs=49.4
Q ss_pred hHHHHHHhhhHHHHcCCCEEEeCC---CCCCCCCCCCCcccCCCcCCCCCCHHHHHHHHHHHhhCCCEEEEeeeeccccC
Q 021281 41 WWRNLERKVPDISKSGFTSVWLPP---ATHSFAPEGYLPQNLYSLNSSYGSEHLLKALLHKMKQHKVRAMADIVINHRVG 117 (314)
Q Consensus 41 ~~~gi~~~ldyl~~lG~~~I~l~P---i~~~~~~~gY~~~d~~~id~~~Gt~~df~~lv~~ah~~Gi~VilD~V~NH~~~ 117 (314)
+-+.+...|..||.+||++|-+-= |.+..+...| .....++|.+-+++.|+||..=+-+..+|.
T Consensus 105 ~~~~l~~~L~~LK~~GVdGVmvDVWWGiVE~~~p~~Y-------------dWsgY~~l~~mvr~~GLKlq~vmSFHqCGG 171 (548)
T PLN02803 105 KPRAMNASLMALRSAGVEGVMVDAWWGLVEKDGPMKY-------------NWEGYAELVQMVQKHGLKLQVVMSFHQCGG 171 (548)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEEeeeeeeccCCCCcC-------------CcHHHHHHHHHHHHcCCeEEEEEEecccCC
Confidence 448999999999999999996532 2232223333 356788999999999999999888888776
Q ss_pred C
Q 021281 118 T 118 (314)
Q Consensus 118 ~ 118 (314)
.
T Consensus 172 N 172 (548)
T PLN02803 172 N 172 (548)
T ss_pred C
Confidence 4
No 194
>PLN02161 beta-amylase
Probab=63.37 E-value=31 Score=34.49 Aligned_cols=64 Identities=9% Similarity=0.221 Sum_probs=49.0
Q ss_pred hHHHHHHhhhHHHHcCCCEEEeCC---CCCCCCCCCCCcccCCCcCCCCCCHHHHHHHHHHHhhCCCEEEEeeeeccccC
Q 021281 41 WWRNLERKVPDISKSGFTSVWLPP---ATHSFAPEGYLPQNLYSLNSSYGSEHLLKALLHKMKQHKVRAMADIVINHRVG 117 (314)
Q Consensus 41 ~~~gi~~~ldyl~~lG~~~I~l~P---i~~~~~~~gY~~~d~~~id~~~Gt~~df~~lv~~ah~~Gi~VilD~V~NH~~~ 117 (314)
+.+.+...|..||.+||++|-+-= |.+..+...| .....++|++-+++.|+||..=+-+..++.
T Consensus 115 ~~~al~~~L~~LK~~GVdGVmvDVWWGiVE~~~p~~Y-------------dWsgY~~l~~mvr~~GLKlq~vmSFHqCGG 181 (531)
T PLN02161 115 RLKALTVSLKALKLAGVHGIAVEVWWGIVERFSPLEF-------------KWSLYEELFRLISEAGLKLHVALCFHSNMH 181 (531)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEEeeeeeeecCCCCcC-------------CcHHHHHHHHHHHHcCCeEEEEEEecccCC
Confidence 678899999999999999996532 2232223333 356788999999999999999888887665
No 195
>TIGR00538 hemN oxygen-independent coproporphyrinogen III oxidase. This model represents HemN, the oxygen-independent coproporphyrinogen III oxidase that replaces HemF function under anaerobic conditions. Several species, including E. coli, Helicobacter pylori, and Aquifex aeolicus, have both a member of this family and a member of another, closely related family for which there is no evidence of coproporphyrinogen III oxidase activity. Members of this family have a perfectly conserved motif PYRT[SC]YP in a region N-terminal to the region of homology with the related uncharacterized protein.
Probab=63.26 E-value=17 Score=35.91 Aligned_cols=33 Identities=9% Similarity=0.165 Sum_probs=27.3
Q ss_pred CCCCHHHHHHHHHHHhhCCCE-EEEeeeeccccC
Q 021281 85 SYGSEHLLKALLHKMKQHKVR-AMADIVINHRVG 117 (314)
Q Consensus 85 ~~Gt~~df~~lv~~ah~~Gi~-VilD~V~NH~~~ 117 (314)
+-.+.++..+.++.+++.|++ |-+|+.++..+.
T Consensus 182 r~~~~~~~~~ai~~l~~~G~~~v~~dli~GlPgq 215 (455)
T TIGR00538 182 RIQPEEMIFELMNHAREAGFTSINIDLIYGLPKQ 215 (455)
T ss_pred CCCCHHHHHHHHHHHHhcCCCcEEEeEEeeCCCC
Confidence 346788999999999999997 779998886554
No 196
>PRK09856 fructoselysine 3-epimerase; Provisional
Probab=62.95 E-value=21 Score=32.20 Aligned_cols=52 Identities=12% Similarity=0.205 Sum_probs=37.0
Q ss_pred HHHHhhhHHHHcCCCEEEeCCCCCCCCCCCCCcccCCCcCCCCCCHHHHHHHHHHHhhCCCEEEE
Q 021281 44 NLERKVPDISKSGFTSVWLPPATHSFAPEGYLPQNLYSLNSSYGSEHLLKALLHKMKQHKVRAMA 108 (314)
Q Consensus 44 gi~~~ldyl~~lG~~~I~l~Pi~~~~~~~gY~~~d~~~id~~~Gt~~df~~lv~~ah~~Gi~Vil 108 (314)
.+.+.++.++++||++|.|.+-. .+.|. +.+ +..++++|.+++.+.||+|..
T Consensus 14 ~l~~~l~~~~~~G~~~vEl~~~~----~~~~~--------~~~-~~~~~~~l~~~~~~~gl~v~s 65 (275)
T PRK09856 14 PIEHAFRDASELGYDGIEIWGGR----PHAFA--------PDL-KAGGIKQIKALAQTYQMPIIG 65 (275)
T ss_pred CHHHHHHHHHHcCCCEEEEccCC----ccccc--------ccc-CchHHHHHHHHHHHcCCeEEE
Confidence 48899999999999999984210 11121 111 345788999999999999853
No 197
>TIGR01211 ELP3 histone acetyltransferase, ELP3 family. The Saccharomyces cerevisiae member YPL086C has been characterized in vitro as an N-terminal acetyltransferase for all four core histones. It is a component of the RNA polymerase II holoenzyme, designated Elp3p for Elongator Protein 3. Members of this family are found in eukaryotes and archaea. These proteins are part of the larger set of GNAT acetyltransferases.
Probab=62.69 E-value=15 Score=37.05 Aligned_cols=63 Identities=14% Similarity=0.047 Sum_probs=46.9
Q ss_pred HHhhhHHHHcCCCEEEeCCCCCCCCCCCCCcccCCCcCCCCCCHHHHHHHHHHHhhCCCEEEEeeeecccc
Q 021281 46 ERKVPDISKSGFTSVWLPPATHSFAPEGYLPQNLYSLNSSYGSEHLLKALLHKMKQHKVRAMADIVINHRV 116 (314)
Q Consensus 46 ~~~ldyl~~lG~~~I~l~Pi~~~~~~~gY~~~d~~~id~~~Gt~~df~~lv~~ah~~Gi~VilD~V~NH~~ 116 (314)
.++|+.|+++|++.|.|.. ++ .++-+ ...++ +--+.++..+.++.+++.|++|.+|+.++--+
T Consensus 206 ~e~L~~L~~~G~~rVslGV--QS----~~d~V-L~~in-Rght~~~v~~Ai~~lr~~G~~v~~~LM~GLPg 268 (522)
T TIGR01211 206 EEHIDRMLKLGATRVELGV--QT----IYNDI-LERTK-RGHTVRDVVEATRLLRDAGLKVVYHIMPGLPG 268 (522)
T ss_pred HHHHHHHHHcCCCEEEEEC--cc----CCHHH-HHHhC-CCCCHHHHHHHHHHHHHcCCeEEEEeecCCCC
Confidence 5789999999999999875 12 12211 22333 33478899999999999999999999988544
No 198
>cd05014 SIS_Kpsf KpsF-like protein. KpsF is an arabinose-5-phosphate isomerase which contains SIS (Sugar ISomerase) domains. SIS domains are found in many phosphosugar isomerases and phosphosugar binding proteins. KpsF catalyzes the reversible reaction of ribulose 5-phosphate to arabinose 5-phosphate. This is the second step in the CMP-Kdo biosynthesis pathway.
Probab=62.14 E-value=36 Score=26.63 Aligned_cols=59 Identities=20% Similarity=0.247 Sum_probs=38.8
Q ss_pred hHHHHcCCCEEEeCCCCCCC-CCCCCCcccCCCcCCCCCCHHHHHHHHHHHhhCCCEEEE
Q 021281 50 PDISKSGFTSVWLPPATHSF-APEGYLPQNLYSLNSSYGSEHLLKALLHKMKQHKVRAMA 108 (314)
Q Consensus 50 dyl~~lG~~~I~l~Pi~~~~-~~~gY~~~d~~~id~~~Gt~~df~~lv~~ah~~Gi~Vil 108 (314)
..+..+|...+.+.+..... ........|..-+=+.-|..++..++++.||++|++||.
T Consensus 20 ~~l~~~g~~~~~~~~~~~~~~~~~~~~~~d~vi~iS~sG~t~~~~~~~~~a~~~g~~vi~ 79 (128)
T cd05014 20 ATLSSTGTPAFFLHPTEALHGDLGMVTPGDVVIAISNSGETDELLNLLPHLKRRGAPIIA 79 (128)
T ss_pred HHhhcCCCceEEcccchhhccccCcCCCCCEEEEEeCCCCCHHHHHHHHHHHHCCCeEEE
Confidence 44577899999886642111 011122233333336668889999999999999999998
No 199
>PRK10605 N-ethylmaleimide reductase; Provisional
Probab=61.67 E-value=1e+02 Score=29.52 Aligned_cols=29 Identities=7% Similarity=-0.035 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHhhCCCEEEEeeeeccccCCC
Q 021281 89 EHLLKALLHKMKQHKVRAMADIVINHRVGTT 119 (314)
Q Consensus 89 ~~df~~lv~~ah~~Gi~VilD~V~NH~~~~~ 119 (314)
.+.|+++++++|++|-++++- ++|.|...
T Consensus 78 i~~~~~lad~vH~~Ga~i~~Q--L~H~Gr~~ 106 (362)
T PRK10605 78 IAAWKKITAGVHAEGGHIAVQ--LWHTGRIS 106 (362)
T ss_pred HHHHHHHHHHHHhCCCEEEEe--ccCCCCCC
Confidence 477999999999999999985 47887654
No 200
>PRK08134 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=61.65 E-value=16 Score=35.90 Aligned_cols=82 Identities=9% Similarity=0.055 Sum_probs=50.9
Q ss_pred ccCCceeEEEEeeCCCCCCchHHHHHHhhh-HHHHcCCCEEEeCCCCCCC------CCCCCCcccCCCcCCCCCCHHHHH
Q 021281 21 IRNGREILFQGFNWESCKHDWWRNLERKVP-DISKSGFTSVWLPPATHSF------APEGYLPQNLYSLNSSYGSEHLLK 93 (314)
Q Consensus 21 ~~~~~~~i~q~F~w~~~~~g~~~gi~~~ld-yl~~lG~~~I~l~Pi~~~~------~~~gY~~~d~~~id~~~Gt~~df~ 93 (314)
.++|+.||..-..+ -+....+. .++..|++.+++.+- .. -...=..+-.-.+....|...|++
T Consensus 100 l~~Gd~Vi~~~~~y--------~~t~~~~~~~l~~~Gi~v~~vd~~--d~~~l~~~i~~~TklV~~e~~~np~g~v~Di~ 169 (433)
T PRK08134 100 MGAGSHIVASSALY--------GGSHNLLHYTLRRFGIETTFVKPG--DIDGWRAAIRPNTRLLFGETLGNPGLEVLDIP 169 (433)
T ss_pred hCCCCEEEEeCCcc--------HHHHHHHHHHHhhCCeEEEEECCC--CHHHHHHhcCCCCeEEEEECCCcccCcccCHH
Confidence 45677888776653 33333332 367899998888752 11 001101111122334455668999
Q ss_pred HHHHHHhhCCCEEEEeeee
Q 021281 94 ALLHKMKQHKVRAMADIVI 112 (314)
Q Consensus 94 ~lv~~ah~~Gi~VilD~V~ 112 (314)
++.+.||++|+.||+|-..
T Consensus 170 ~I~~la~~~gi~livD~t~ 188 (433)
T PRK08134 170 TVAAIAHEAGVPLLVDSTF 188 (433)
T ss_pred HHHHHHHHcCCEEEEECCC
Confidence 9999999999999999874
No 201
>PF01041 DegT_DnrJ_EryC1: DegT/DnrJ/EryC1/StrS aminotransferase family; InterPro: IPR000653 This entry represents a family that are probably all pyridoxal-phosphate-dependent aminotransferase enzymes with a variety of molecular functions. The family includes StsA P72454 from SWISSPROT, StsC P77952 from SWISSPROT and StsS []. The aminotransferase activity was demonstrated for purified StsC protein as the L-glutamine:scyllo-inosose aminotransferase 2.6.1.50 from EC, which catalyses the first amino transfer in the biosynthesis of the streptidine subunit of streptomycin [].; PDB: 2FNI_A 2FNU_A 2FN6_A 2PO3_A 3UWC_A 1O61_B 1O62_B 1O69_B 1B9I_A 1B9H_A ....
Probab=61.49 E-value=17 Score=34.42 Aligned_cols=83 Identities=13% Similarity=0.229 Sum_probs=43.5
Q ss_pred cccCCceeEEEEeeCCCCCCchHHHHHHhhhHHHHcCCCEEEeCCCCCCCCCCCCCcccC----------CCcCCCCCCH
Q 021281 20 VIRNGREILFQGFNWESCKHDWWRNLERKVPDISKSGFTSVWLPPATHSFAPEGYLPQNL----------YSLNSSYGSE 89 (314)
Q Consensus 20 ~~~~~~~~i~q~F~w~~~~~g~~~gi~~~ldyl~~lG~~~I~l~Pi~~~~~~~gY~~~d~----------~~id~~~Gt~ 89 (314)
...+|++||+..|.|. .-+.-+..+|..-|++- |-+. +..-++.+. --+-.-+|..
T Consensus 61 ~~~~gdeVi~p~~t~~-----------~~~~ai~~~G~~pv~~D-i~~~--~~~id~~~~~~~i~~~t~ai~~~h~~G~~ 126 (363)
T PF01041_consen 61 GLGPGDEVIVPAYTFP-----------ATASAILWAGAEPVFVD-IDPE--TLNIDPEALEKAITPKTKAILVVHLFGNP 126 (363)
T ss_dssp TGGTTSEEEEESSS-T-----------HHHHHHHHTT-EEEEE--BETT--TSSB-HHHHHHHHHTTEEEEEEE-GGGB-
T ss_pred CCCcCceEecCCCcch-----------HHHHHHHHhccEEEEEe-ccCC--cCCcCHHHHHHHhccCccEEEEecCCCCc
Confidence 3447889999999876 23334555666655541 1100 001111000 0012456788
Q ss_pred HHHHHHHHHHhhCCCEEEEeeeecccc
Q 021281 90 HLLKALLHKMKQHKVRAMADIVINHRV 116 (314)
Q Consensus 90 ~df~~lv~~ah~~Gi~VilD~V~NH~~ 116 (314)
.++.++.+-|+++||.||-|-.-.|-+
T Consensus 127 ~d~~~i~~~~~~~~i~lIeD~a~a~g~ 153 (363)
T PF01041_consen 127 ADMDAIRAIARKHGIPLIEDAAQAFGA 153 (363)
T ss_dssp --HHHHHHHHHHTT-EEEEE-TTTTT-
T ss_pred ccHHHHHHHHHHcCCcEEEccccccCc
Confidence 899999999999999999998766644
No 202
>PRK05968 hypothetical protein; Provisional
Probab=60.98 E-value=32 Score=33.15 Aligned_cols=85 Identities=21% Similarity=0.123 Sum_probs=49.4
Q ss_pred ccCCceeEEEEeeCCCCCCchHHHHHHhhhHHHHcCCCEEEeCCCCCCC---CCCCCCcccCCCcCCCCCCHHHHHHHHH
Q 021281 21 IRNGREILFQGFNWESCKHDWWRNLERKVPDISKSGFTSVWLPPATHSF---APEGYLPQNLYSLNSSYGSEHLLKALLH 97 (314)
Q Consensus 21 ~~~~~~~i~q~F~w~~~~~g~~~gi~~~ldyl~~lG~~~I~l~Pi~~~~---~~~gY~~~d~~~id~~~Gt~~df~~lv~ 97 (314)
..+|+.||+...... +++.-+. ..++..|++.+++.+.-... .-......-...+....+...+++++.+
T Consensus 99 ~~~Gd~Vl~~~~~y~----~t~~~~~---~~~~~~G~~v~~vd~~d~~~l~~~i~~tklV~ie~pt~~~~~~~dl~~i~~ 171 (389)
T PRK05968 99 VEPGDRIVAVRHVYP----DAFRLFE---TILKRMGVEVDYVDGRDEEAVAKALPGAKLLYLESPTSWVFELQDVAALAA 171 (389)
T ss_pred hCCCCEEEEeCCCch----HHHHHHH---HHHHHcCceEEEeCCCCHHHHHHhcccCCEEEEECCCCCCCcHHHHHHHHH
Confidence 456778877654311 1122222 34677888888875420000 0001111101123455677899999999
Q ss_pred HHhhCCCEEEEeeee
Q 021281 98 KMKQHKVRAMADIVI 112 (314)
Q Consensus 98 ~ah~~Gi~VilD~V~ 112 (314)
.||++|+.||+|-..
T Consensus 172 la~~~gi~vivD~a~ 186 (389)
T PRK05968 172 LAKRHGVVTMIDNSW 186 (389)
T ss_pred HHHHcCCEEEEECCC
Confidence 999999999999864
No 203
>PF02836 Glyco_hydro_2_C: Glycosyl hydrolases family 2, TIM barrel domain; InterPro: IPR006103 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 2 GH2 from CAZY comprises enzymes with several known activities; beta-galactosidase (3.2.1.23 from EC); beta-mannosidase (3.2.1.25 from EC); beta-glucuronidase (3.2.1.31 from EC). These enzymes contain a conserved glutamic acid residue which has been shown [], in Escherichia coli lacZ (P00722 from SWISSPROT), to be the general acid/base catalyst in the active site of the enzyme. Beta-galactosidase from E. coli has a TIM-barrel-like core surrounded by four other largely beta domains [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3CMG_A 3FN9_C 1YQ2_A 3K4D_B 3LPG_B 3LPF_A 3K4A_B 3K46_B 3GM8_A 3DEC_A ....
Probab=60.73 E-value=30 Score=31.80 Aligned_cols=67 Identities=18% Similarity=0.267 Sum_probs=44.3
Q ss_pred cCCceeEEEEeeCCC--CCCc---hHHHHHHhhhHHHHcCCCEEEeCCCCCCCCCCCCCcccCCCcCCCCCCHHHHHHHH
Q 021281 22 RNGREILFQGFNWES--CKHD---WWRNLERKVPDISKSGFTSVWLPPATHSFAPEGYLPQNLYSLNSSYGSEHLLKALL 96 (314)
Q Consensus 22 ~~~~~~i~q~F~w~~--~~~g---~~~gi~~~ldyl~~lG~~~I~l~Pi~~~~~~~gY~~~d~~~id~~~Gt~~df~~lv 96 (314)
-||+.+.+++..+.. +..| +-+.+...+.-+|++|+|+|=+. .|-+ =.++.
T Consensus 10 lNGk~~~l~Gv~~h~~~~~~g~a~~~~~~~~d~~l~k~~G~N~iR~~---------h~p~---------------~~~~~ 65 (298)
T PF02836_consen 10 LNGKPIFLRGVNRHQDYPGLGRAMPDEAMERDLELMKEMGFNAIRTH---------HYPP---------------SPRFY 65 (298)
T ss_dssp ETTEEE-EEEEEE-S-BTTTBT---HHHHHHHHHHHHHTT-SEEEET---------TS-----------------SHHHH
T ss_pred ECCEEEEEEEEeeCcCcccccccCCHHHHHHHHHHHHhcCcceEEcc---------cccC---------------cHHHH
Confidence 478888899988643 3333 67888889999999999999763 1110 13667
Q ss_pred HHHhhCCCEEEEeeee
Q 021281 97 HKMKQHKVRAMADIVI 112 (314)
Q Consensus 97 ~~ah~~Gi~VilD~V~ 112 (314)
+.|-+.||-|+.++..
T Consensus 66 ~~cD~~GilV~~e~~~ 81 (298)
T PF02836_consen 66 DLCDELGILVWQEIPL 81 (298)
T ss_dssp HHHHHHT-EEEEE-S-
T ss_pred HHHhhcCCEEEEeccc
Confidence 7899999999999976
No 204
>PRK09997 hydroxypyruvate isomerase; Provisional
Probab=60.59 E-value=24 Score=31.66 Aligned_cols=64 Identities=8% Similarity=-0.016 Sum_probs=37.0
Q ss_pred HHHhhhHHHHcCCCEEEeCCCCCCC--------CCCCCC-------cccCC------CcCCCCC--CHHHHHHHHHHHhh
Q 021281 45 LERKVPDISKSGFTSVWLPPATHSF--------APEGYL-------PQNLY------SLNSSYG--SEHLLKALLHKMKQ 101 (314)
Q Consensus 45 i~~~ldyl~~lG~~~I~l~Pi~~~~--------~~~gY~-------~~d~~------~id~~~G--t~~df~~lv~~ah~ 101 (314)
+.+.++.++++||++|.|...+... ..+|-. +.++. .++|.-- ..+.+++.|+.|++
T Consensus 17 l~~~l~~~a~~Gf~~VEl~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~a~~ 96 (258)
T PRK09997 17 FLARFEKAAQCGFRGVEFMFPYDYDIEELKQVLASNKLEHTLHNLPAGDWAAGERGIACIPGREEEFRDGVAAAIRYARA 96 (258)
T ss_pred HHHHHHHHHHhCCCEEEEcCCCCCCHHHHHHHHHHcCCcEEEEcCCCCccccCcCccccCCCcHHHHHHHHHHHHHHHHH
Confidence 6778999999999999985433211 012211 11111 0122100 12458888888999
Q ss_pred CCCEEEE
Q 021281 102 HKVRAMA 108 (314)
Q Consensus 102 ~Gi~Vil 108 (314)
.|.++|.
T Consensus 97 lga~~i~ 103 (258)
T PRK09997 97 LGNKKIN 103 (258)
T ss_pred hCCCEEE
Confidence 9998764
No 205
>COG1874 LacA Beta-galactosidase [Carbohydrate transport and metabolism]
Probab=60.45 E-value=14 Score=38.33 Aligned_cols=66 Identities=9% Similarity=0.117 Sum_probs=46.0
Q ss_pred EEEEeeCCCCCCchHHHHHHhhhHHHHcCCCEEEeCCCCCCC--CCCCCCcccCCCcCCCCCCHHHHHHHHHHHhhCCCE
Q 021281 28 LFQGFNWESCKHDWWRNLERKVPDISKSGFTSVWLPPATHSF--APEGYLPQNLYSLNSSYGSEHLLKALLHKMKQHKVR 105 (314)
Q Consensus 28 i~q~F~w~~~~~g~~~gi~~~ldyl~~lG~~~I~l~Pi~~~~--~~~gY~~~d~~~id~~~Gt~~df~~lv~~ah~~Gi~ 105 (314)
.|+-|.|. =+.+.+.|.-+|.+|+|+|-+..+.-+. ...| ..|| +..+ .. +++.|++.|++
T Consensus 21 ~y~p~~~p------~~~w~ddl~~mk~~G~N~V~ig~faW~~~eP~eG--~fdf-------~~~D-~~-~l~~a~~~Gl~ 83 (673)
T COG1874 21 DYYPERWP------RETWMDDLRKMKALGLNTVRIGYFAWNLHEPEEG--KFDF-------TWLD-EI-FLERAYKAGLY 83 (673)
T ss_pred ccChHHCC------HHHHHHHHHHHHHhCCCeeEeeeEEeeccCcccc--ccCc-------ccch-HH-HHHHHHhcCce
Confidence 44556676 3888999999999999999998776433 1112 2222 2233 34 89999999999
Q ss_pred EEEee
Q 021281 106 AMADI 110 (314)
Q Consensus 106 VilD~ 110 (314)
|||==
T Consensus 84 vil~t 88 (673)
T COG1874 84 VILRT 88 (673)
T ss_pred EEEec
Confidence 99943
No 206
>PLN00197 beta-amylase; Provisional
Probab=60.44 E-value=35 Score=34.45 Aligned_cols=65 Identities=14% Similarity=0.218 Sum_probs=49.6
Q ss_pred hHHHHHHhhhHHHHcCCCEEEeCC---CCCCCCCCCCCcccCCCcCCCCCCHHHHHHHHHHHhhCCCEEEEeeeeccccC
Q 021281 41 WWRNLERKVPDISKSGFTSVWLPP---ATHSFAPEGYLPQNLYSLNSSYGSEHLLKALLHKMKQHKVRAMADIVINHRVG 117 (314)
Q Consensus 41 ~~~gi~~~ldyl~~lG~~~I~l~P---i~~~~~~~gY~~~d~~~id~~~Gt~~df~~lv~~ah~~Gi~VilD~V~NH~~~ 117 (314)
+-+.+...|..||.+||++|-+-= |.+..+...| .....++|++-+++.|+||..=+-+..+|.
T Consensus 125 ~~~~l~~~L~~LK~~GVdGVmvDvWWGiVE~~~p~~Y-------------dWsgY~~L~~mvr~~GLKlq~VmSFHqCGG 191 (573)
T PLN00197 125 RRKAMKASLQALKSAGVEGIMMDVWWGLVERESPGVY-------------NWGGYNELLEMAKRHGLKVQAVMSFHQCGG 191 (573)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEeeeeeeeccCCCCcC-------------CcHHHHHHHHHHHHcCCeEEEEEEecccCC
Confidence 567899999999999999996532 2232223333 356788999999999999999888888776
Q ss_pred C
Q 021281 118 T 118 (314)
Q Consensus 118 ~ 118 (314)
.
T Consensus 192 N 192 (573)
T PLN00197 192 N 192 (573)
T ss_pred C
Confidence 3
No 207
>cd04733 OYE_like_2_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 2. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=59.09 E-value=73 Score=30.03 Aligned_cols=29 Identities=14% Similarity=0.102 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHhhCCCEEEEeeeeccccCCC
Q 021281 89 EHLLKALLHKMKQHKVRAMADIVINHRVGTT 119 (314)
Q Consensus 89 ~~df~~lv~~ah~~Gi~VilD~V~NH~~~~~ 119 (314)
.+.||+|++++|++|-++++-+ +|.|...
T Consensus 81 i~~~~~l~~~vh~~G~~~~~Ql--~h~G~~~ 109 (338)
T cd04733 81 LEAFREWAAAAKANGALIWAQL--NHPGRQS 109 (338)
T ss_pred HHHHHHHHHHHHhcCCEEEEEc--cCCCcCC
Confidence 4789999999999999998865 6877643
No 208
>PRK08064 cystathionine beta-lyase; Provisional
Probab=58.85 E-value=24 Score=33.94 Aligned_cols=85 Identities=8% Similarity=0.069 Sum_probs=49.3
Q ss_pred ccCCceeEEEEeeCCCCCCchHHHHHHhhhHHHHcCCCEEEeCCCC----CCCCCCCCCcccCCCcCCCCCCHHHHHHHH
Q 021281 21 IRNGREILFQGFNWESCKHDWWRNLERKVPDISKSGFTSVWLPPAT----HSFAPEGYLPQNLYSLNSSYGSEHLLKALL 96 (314)
Q Consensus 21 ~~~~~~~i~q~F~w~~~~~g~~~gi~~~ldyl~~lG~~~I~l~Pi~----~~~~~~gY~~~d~~~id~~~Gt~~df~~lv 96 (314)
..+|+.|++.-..+. +.+.... ..++..|++.+++...- +..-...-..+=...++.-.|...++++++
T Consensus 89 l~~Gd~Vlv~~~~y~----~~~~~~~---~~~~~~G~~v~~v~~~d~~~l~~~l~~~tklV~l~~p~NptG~~~dl~~I~ 161 (390)
T PRK08064 89 LSKGDHVLISEDVYG----GTYRMIT---EVLSRFGIEHTFVDMTNLEEVAQNIKPNTKLFYVETPSNPLLKVTDIRGVV 161 (390)
T ss_pred hCCCCEEEEccCccc----hHHHHHH---HHHHHcCCEEEEECCCCHHHHHHhcCCCceEEEEECCCCCCcEeccHHHHH
Confidence 456777877655432 1122222 34567888887764310 000011111211222444578888999999
Q ss_pred HHHhhCCCEEEEeeee
Q 021281 97 HKMKQHKVRAMADIVI 112 (314)
Q Consensus 97 ~~ah~~Gi~VilD~V~ 112 (314)
+.||++|+.||+|-.+
T Consensus 162 ~la~~~g~~vvvD~a~ 177 (390)
T PRK08064 162 KLAKAIGCLTFVDNTF 177 (390)
T ss_pred HHHHHcCCEEEEECCC
Confidence 9999999999999763
No 209
>PRK09249 coproporphyrinogen III oxidase; Provisional
Probab=58.76 E-value=24 Score=34.84 Aligned_cols=33 Identities=9% Similarity=0.025 Sum_probs=28.0
Q ss_pred CCCCHHHHHHHHHHHhhCCC-EEEEeeeeccccC
Q 021281 85 SYGSEHLLKALLHKMKQHKV-RAMADIVINHRVG 117 (314)
Q Consensus 85 ~~Gt~~df~~lv~~ah~~Gi-~VilD~V~NH~~~ 117 (314)
+..+.++..+.++.+++.|+ .|-+|+.++.-+.
T Consensus 182 r~~~~~~~~~ai~~l~~~G~~~v~~dli~GlPgq 215 (453)
T PRK09249 182 RIQPFEFTFALVEAARELGFTSINIDLIYGLPKQ 215 (453)
T ss_pred CCCCHHHHHHHHHHHHHcCCCcEEEEEEccCCCC
Confidence 44688999999999999999 7999999886554
No 210
>PRK09593 arb 6-phospho-beta-glucosidase; Reviewed
Probab=58.45 E-value=74 Score=31.78 Aligned_cols=64 Identities=11% Similarity=0.223 Sum_probs=43.2
Q ss_pred hHHHHHHhhhHHHHcCCCEEEeCCCCCCCCCCCCCcccCCCcCCCCCCHHHHHHHHHHHhhCCCEEEEee
Q 021281 41 WWRNLERKVPDISKSGFTSVWLPPATHSFAPEGYLPQNLYSLNSSYGSEHLLKALLHKMKQHKVRAMADI 110 (314)
Q Consensus 41 ~~~gi~~~ldyl~~lG~~~I~l~Pi~~~~~~~gY~~~d~~~id~~~Gt~~df~~lv~~ah~~Gi~VilD~ 110 (314)
.+....+-++-+++||+++-=++=-....-+.|... .+| -...+=.++||++|+++||+.|+-+
T Consensus 71 ~Yhry~eDi~Lm~~lG~~aYRfSIsWsRI~P~G~~~----~~N--~~gl~~Y~~lId~L~~~GI~P~VTL 134 (478)
T PRK09593 71 MYHHYKEDIALFAEMGFKTYRMSIAWTRIFPKGDEL----EPN--EAGLQFYEDIFKECHKYGIEPLVTI 134 (478)
T ss_pred hHHhhHHHHHHHHHcCCCEEEEecchhhcccCCCCC----CCC--HHHHHHHHHHHHHHHHcCCEEEEEe
Confidence 789999999999999999986653222111122100 111 1123457899999999999999854
No 211
>TIGR03234 OH-pyruv-isom hydroxypyruvate isomerase. This enzyme interconverts tartronate semi-aldehyde (TSA, aka 2-hydroxy 3-oxopropionate) and hydroxypyruvate. The E. coli enzyme has been characterized and found to be specific for TSA, contain no cofactors, and have a rather high Km for hydroxypyruvate of 12.5 mM. The gene is ofter found in association with glyoxalate carboligase (which produces TSA), but has been shown to have no effect on growth on glyoxalate when knocked out. This is consistent with the fact that the gene for tartronate semialdehyde reductase (glxR) is also associated and may have primary responsibility for the catabolism of TSA.
Probab=58.33 E-value=33 Score=30.59 Aligned_cols=21 Identities=19% Similarity=0.222 Sum_probs=15.7
Q ss_pred HHHHhhhHHHHcCCCEEEeCC
Q 021281 44 NLERKVPDISKSGFTSVWLPP 64 (314)
Q Consensus 44 gi~~~ldyl~~lG~~~I~l~P 64 (314)
.+.+.++-++++||++|.|..
T Consensus 15 ~l~e~~~~~~e~G~~~vEl~~ 35 (254)
T TIGR03234 15 PFLERFAAAAQAGFTGVEYLF 35 (254)
T ss_pred CHHHHHHHHHHcCCCEEEecC
Confidence 466777778888888888753
No 212
>cd04724 Tryptophan_synthase_alpha Ttryptophan synthase (TRPS) alpha subunit (TSA). TPRS is a bifunctional tetrameric enzyme (2 alpha and 2 beta subunits) that catalyzes the last two steps of L-tryptophan biosynthesis. Alpha and beta subunit catalyze two distinct reactions which are both strongly stimulated by the formation of the complex. The alpha subunit catalyzes the cleavage of indole 3-glycerol phosphate (IGP) to indole and d-glyceraldehyde 3-phosphate (G3P). Indole is then channeled to the active site of the beta subunit, a PLP-dependent enzyme that catalyzes a replacement reaction to convert L-serine into L-tryptophan.
Probab=57.99 E-value=23 Score=31.80 Aligned_cols=24 Identities=4% Similarity=-0.054 Sum_probs=20.3
Q ss_pred HHHHHHHHHHhhCCCEEEEeeeec
Q 021281 90 HLLKALLHKMKQHKVRAMADIVIN 113 (314)
Q Consensus 90 ~df~~lv~~ah~~Gi~VilD~V~N 113 (314)
|++.++++.|+++||+.++=+.++
T Consensus 116 ee~~~~~~~~~~~g~~~i~~i~P~ 139 (242)
T cd04724 116 EEAEEFREAAKEYGLDLIFLVAPT 139 (242)
T ss_pred HHHHHHHHHHHHcCCcEEEEeCCC
Confidence 689999999999999999855444
No 213
>PLN02705 beta-amylase
Probab=57.95 E-value=38 Score=34.65 Aligned_cols=65 Identities=9% Similarity=0.153 Sum_probs=49.7
Q ss_pred hHHHHHHhhhHHHHcCCCEEEeCCC---CCCCCCCCCCcccCCCcCCCCCCHHHHHHHHHHHhhCCCEEEEeeeeccccC
Q 021281 41 WWRNLERKVPDISKSGFTSVWLPPA---THSFAPEGYLPQNLYSLNSSYGSEHLLKALLHKMKQHKVRAMADIVINHRVG 117 (314)
Q Consensus 41 ~~~gi~~~ldyl~~lG~~~I~l~Pi---~~~~~~~gY~~~d~~~id~~~Gt~~df~~lv~~ah~~Gi~VilD~V~NH~~~ 117 (314)
+-+.|...|..||.+||++|-+-=. .+..+...| .....++|++-+++.||||..=+-+..|+.
T Consensus 266 ~~~al~a~L~aLK~aGVdGVmvDVWWGiVE~~~P~~Y-------------dWsgY~~L~~mvr~~GLKlqvVmSFHqCGG 332 (681)
T PLN02705 266 DPEGVRQELSHMKSLNVDGVVVDCWWGIVEGWNPQKY-------------VWSGYRELFNIIREFKLKLQVVMAFHEYGG 332 (681)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEeeeeeEeecCCCCcC-------------CcHHHHHHHHHHHHcCCeEEEEEEeeccCC
Confidence 6799999999999999999975321 222223333 356788999999999999999888888776
Q ss_pred C
Q 021281 118 T 118 (314)
Q Consensus 118 ~ 118 (314)
.
T Consensus 333 N 333 (681)
T PLN02705 333 N 333 (681)
T ss_pred C
Confidence 3
No 214
>PRK08114 cystathionine beta-lyase; Provisional
Probab=57.90 E-value=20 Score=34.80 Aligned_cols=84 Identities=19% Similarity=0.224 Sum_probs=51.3
Q ss_pred ccCCceeEEEEeeCCCCCCchHHHHHHhh-hHHHHcCCCEEEeCCCCCC----CCCCCCCcccCCCcCCCCCCHHHHHHH
Q 021281 21 IRNGREILFQGFNWESCKHDWWRNLERKV-PDISKSGFTSVWLPPATHS----FAPEGYLPQNLYSLNSSYGSEHLLKAL 95 (314)
Q Consensus 21 ~~~~~~~i~q~F~w~~~~~g~~~gi~~~l-dyl~~lG~~~I~l~Pi~~~----~~~~gY~~~d~~~id~~~Gt~~df~~l 95 (314)
.++|+.|++.-.. +.+...-+ ..+++.|++..++.|.-.. .-...-..+=...+..-.|...|++++
T Consensus 98 l~~GD~Vv~~~~~--------Yg~t~~l~~~~l~~~Gi~v~~vd~~d~~~l~~~l~~~TrlV~~EtpsNp~~~v~DI~~I 169 (395)
T PRK08114 98 VEQGDHVLMTGTA--------YEPTQDFCSKILSKLGVTTTWFDPLIGADIAKLIQPNTKVVFLESPGSITMEVHDVPAI 169 (395)
T ss_pred cCCCCEEEEeCCC--------cHHHHHHHHHHHHhcCcEEEEECCCCHHHHHHhcCCCceEEEEECCCCCCCEeecHHHH
Confidence 4677777765222 23333333 4578899999998763100 001111122123344556777899999
Q ss_pred HHHHhhCC--CEEEEeeee
Q 021281 96 LHKMKQHK--VRAMADIVI 112 (314)
Q Consensus 96 v~~ah~~G--i~VilD~V~ 112 (314)
++.||++| +.||+|-+.
T Consensus 170 a~ia~~~g~g~~lvVDnT~ 188 (395)
T PRK08114 170 VAAVRSVNPDAVIMIDNTW 188 (395)
T ss_pred HHHHHHhCCCCEEEEECCC
Confidence 99999985 999999765
No 215
>KOG0259 consensus Tyrosine aminotransferase [Amino acid transport and metabolism]
Probab=57.45 E-value=22 Score=34.38 Aligned_cols=78 Identities=22% Similarity=0.281 Sum_probs=56.1
Q ss_pred HHHHHHhhhHHHHcCCCEEEeCCCCCCC----CCCCCCcccCCCcCCC-----------------------------CC-
Q 021281 42 WRNLERKVPDISKSGFTSVWLPPATHSF----APEGYLPQNLYSLNSS-----------------------------YG- 87 (314)
Q Consensus 42 ~~gi~~~ldyl~~lG~~~I~l~Pi~~~~----~~~gY~~~d~~~id~~-----------------------------~G- 87 (314)
-++|+=.++-|+.-|-|-+.--|=|+-- .++|-.+. +|.+-|. -|
T Consensus 136 ~qAIe~~i~~LA~p~aNILlPrPGfp~Y~~~a~~~~lEVR-~ydlLPe~~weIDL~~veal~DENT~AivviNP~NPcGn 214 (447)
T KOG0259|consen 136 SQAIELAISSLANPGANILLPRPGFPLYDTRAIYSGLEVR-YYDLLPEKDWEIDLDGVEALADENTVAIVVINPNNPCGN 214 (447)
T ss_pred hHHHHHHHHHhcCCCCceecCCCCCchHHHhhhhcCceeE-eecccCcccceechHHHHHhhccCeeEEEEeCCCCCCcc
Confidence 5788888899999999988766655332 24443333 2333211 12
Q ss_pred --CHHHHHHHHHHHhhCCCEEEEeeeeccccCCCC
Q 021281 88 --SEHLLKALLHKMKQHKVRAMADIVINHRVGTTQ 120 (314)
Q Consensus 88 --t~~df~~lv~~ah~~Gi~VilD~V~NH~~~~~~ 120 (314)
|.+-|+++.+-||+.||-||.|=|+.|+--.+.
T Consensus 215 Vys~~HL~kiae~A~klgi~vIaDEVY~~~vfg~~ 249 (447)
T KOG0259|consen 215 VYSEDHLKKIAETAKKLGIMVIADEVYGHTVFGDK 249 (447)
T ss_pred cccHHHHHHHHHHHHHhCCeEEehhhcceeecCCC
Confidence 568899999999999999999999999986543
No 216
>TIGR02026 BchE magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative cyclase. This model respresents the cobalamin-dependent oxidative cyclase responsible for forming the distinctive E-ring of the chlorin ring system under anaerobic conditions. This step is essential in the biosynthesis of both bacteriochlorophyll and chlorophyll under anaerobic conditions (a separate enzyme, AcsF, acts under aerobic conditions). This model identifies two clades of sequences, one from photosynthetic, non-cyanobacterial bacteria and another including Synechocystis and several non-photosynthetic bacteria. The function of the Synechocystis gene is supported by gene clustering with other photosynthetic genes, so the purpose of the gene in the non-photosynthetic bacteria is uncertain. Note that homologs of this gene are not found in plants which rely solely on the aerobic cyclase.
Probab=57.14 E-value=20 Score=35.84 Aligned_cols=63 Identities=13% Similarity=0.151 Sum_probs=41.4
Q ss_pred HHhhhHHHHcCCCEEEeCCCCCCCCCCCCCcccCCCcCCCCCCHHHHHHHHHHHhhCCCEEEEeeeecccc
Q 021281 46 ERKVPDISKSGFTSVWLPPATHSFAPEGYLPQNLYSLNSSYGSEHLLKALLHKMKQHKVRAMADIVINHRV 116 (314)
Q Consensus 46 ~~~ldyl~~lG~~~I~l~Pi~~~~~~~gY~~~d~~~id~~~Gt~~df~~lv~~ah~~Gi~VilD~V~NH~~ 116 (314)
.+.|+.+++.|++.|.+.- ++.+.. + +..++ +-.+.++..+.|+.|+++||.+.++++++.-+
T Consensus 287 ~ell~~l~~aG~~~v~iGi--ES~~~~---~--L~~~~-K~~t~~~~~~ai~~l~~~Gi~~~~~~I~G~P~ 349 (497)
T TIGR02026 287 ADILHLYRRAGLVHISLGT--EAAAQA---T--LDHFR-KGTTTSTNKEAIRLLRQHNILSEAQFITGFEN 349 (497)
T ss_pred HHHHHHHHHhCCcEEEEcc--ccCCHH---H--HHHhc-CCCCHHHHHHHHHHHHHCCCcEEEEEEEECCC
Confidence 3456667777777777642 222111 1 12232 23478899999999999999999999987433
No 217
>PRK09589 celA 6-phospho-beta-glucosidase; Reviewed
Probab=57.09 E-value=70 Score=31.91 Aligned_cols=64 Identities=9% Similarity=0.193 Sum_probs=42.6
Q ss_pred hHHHHHHhhhHHHHcCCCEEEeCCCCCCCCCCCCCcccCCCcCCCCCCHHHHHHHHHHHhhCCCEEEEee
Q 021281 41 WWRNLERKVPDISKSGFTSVWLPPATHSFAPEGYLPQNLYSLNSSYGSEHLLKALLHKMKQHKVRAMADI 110 (314)
Q Consensus 41 ~~~gi~~~ldyl~~lG~~~I~l~Pi~~~~~~~gY~~~d~~~id~~~Gt~~df~~lv~~ah~~Gi~VilD~ 110 (314)
.+..-.+-++-+++||+++-=++=-....-+.|... .+ .--..+=.++||++|.++||+.|+-+
T Consensus 65 ~Yhry~eDi~Lm~~lG~~~yRfSIsWsRI~P~G~~~----~~--N~~gl~~Y~~lid~L~~~GI~P~VTL 128 (476)
T PRK09589 65 FYHRYKEDIALFAEMGFKCFRTSIAWTRIFPQGDEL----EP--NEEGLQFYDDLFDECLKQGIEPVVTL 128 (476)
T ss_pred HHHhhHHHHHHHHHcCCCEEEeccchhhcCcCCCCC----CC--CHHHHHHHHHHHHHHHHcCCEEEEEe
Confidence 788899999999999999986543221111122110 01 11124457899999999999999844
No 218
>PRK09852 cryptic 6-phospho-beta-glucosidase; Provisional
Probab=56.44 E-value=24 Score=35.15 Aligned_cols=68 Identities=10% Similarity=0.214 Sum_probs=45.9
Q ss_pred hHHHHHHhhhHHHHcCCCEEEeCCCCCCCCCCCCCcccCCCcCCCCCCHHHHHHHHHHHhhCCCEEEEeeeecccc
Q 021281 41 WWRNLERKVPDISKSGFTSVWLPPATHSFAPEGYLPQNLYSLNSSYGSEHLLKALLHKMKQHKVRAMADIVINHRV 116 (314)
Q Consensus 41 ~~~gi~~~ldyl~~lG~~~I~l~Pi~~~~~~~gY~~~d~~~id~~~Gt~~df~~lv~~ah~~Gi~VilD~V~NH~~ 116 (314)
.+....+-++-+++||+++.=++--+...-+.|.. -.+ .-...+=.++||++|+++||++|+.+ +|-.
T Consensus 69 ~Yhry~eDi~l~~~lG~~~yR~si~WsRi~P~g~~----~~~--n~~~~~~Y~~~i~~l~~~gi~p~VtL--~H~~ 136 (474)
T PRK09852 69 FYHRYKEDIALMAEMGFKVFRTSIAWSRLFPQGDE----LTP--NQQGIAFYRSVFEECKKYGIEPLVTL--CHFD 136 (474)
T ss_pred hhhhhHHHHHHHHHcCCCeEEeeceeeeeeeCCCC----CCC--CHHHHHHHHHHHHHHHHcCCEEEEEe--eCCC
Confidence 68889999999999999998765433221112210 011 11124568899999999999999866 4543
No 219
>PLN02389 biotin synthase
Probab=56.32 E-value=35 Score=32.98 Aligned_cols=27 Identities=11% Similarity=0.037 Sum_probs=25.3
Q ss_pred CHHHHHHHHHHHhhCCCEEEEeeeecc
Q 021281 88 SEHLLKALLHKMKQHKVRAMADIVINH 114 (314)
Q Consensus 88 t~~df~~lv~~ah~~Gi~VilD~V~NH 114 (314)
+.++-.+.++.||+.||+|..=+++.|
T Consensus 211 s~e~rl~ti~~a~~~Gi~v~sg~IiGl 237 (379)
T PLN02389 211 SYDDRLETLEAVREAGISVCSGGIIGL 237 (379)
T ss_pred CHHHHHHHHHHHHHcCCeEeEEEEECC
Confidence 788899999999999999999999998
No 220
>PRK10874 cysteine sulfinate desulfinase; Provisional
Probab=56.27 E-value=30 Score=33.09 Aligned_cols=84 Identities=15% Similarity=0.076 Sum_probs=49.3
Q ss_pred ccCCceeEEEEeeCCCCCCchHHHH-HHhhhHHHHcCCCEEEeCCCCCCC---------CCCCCCcccCCCcCCCCCCHH
Q 021281 21 IRNGREILFQGFNWESCKHDWWRNL-ERKVPDISKSGFTSVWLPPATHSF---------APEGYLPQNLYSLNSSYGSEH 90 (314)
Q Consensus 21 ~~~~~~~i~q~F~w~~~~~g~~~gi-~~~ldyl~~lG~~~I~l~Pi~~~~---------~~~gY~~~d~~~id~~~Gt~~ 90 (314)
..+|+.|++.--+ +... .......+..|++.+++..-.... -...-...-...++..-|...
T Consensus 106 ~~~gd~vl~~~~~--------~~s~~~~~~~~~~~~g~~v~~v~~~~~~~~d~~~l~~~i~~~t~lv~i~~~~n~tG~~~ 177 (401)
T PRK10874 106 LQPGDEIIVSEAE--------HHANLVPWLMVAQQTGAKVVKLPLGADRLPDVDLLPELITPRTRILALGQMSNVTGGCP 177 (401)
T ss_pred CCCcCEEEECCcc--------hHHHHHHHHHHHHHhCCEEEEEecCCCCcCCHHHHHHhcCcCcEEEEEeCCcccccCcC
Confidence 3456666665443 2222 222233466798888875421100 001111111233456678888
Q ss_pred HHHHHHHHHhhCCCEEEEeeee
Q 021281 91 LLKALLHKMKQHKVRAMADIVI 112 (314)
Q Consensus 91 df~~lv~~ah~~Gi~VilD~V~ 112 (314)
+++++++.||++|+.|++|-+-
T Consensus 178 ~~~~i~~l~~~~g~~~ivD~a~ 199 (401)
T PRK10874 178 DLARAITLAHQAGMVVMVDGAQ 199 (401)
T ss_pred CHHHHHHHHHHcCCEEEEECCc
Confidence 8999999999999999999985
No 221
>KOG3111 consensus D-ribulose-5-phosphate 3-epimerase [Carbohydrate transport and metabolism]
Probab=56.27 E-value=14 Score=32.24 Aligned_cols=23 Identities=17% Similarity=0.213 Sum_probs=21.6
Q ss_pred chHHHHHHhhhHHHHcCCCEEEe
Q 021281 40 DWWRNLERKVPDISKSGFTSVWL 62 (314)
Q Consensus 40 g~~~gi~~~ldyl~~lG~~~I~l 62 (314)
.||..|.+++..+.+.|.+.|.|
T Consensus 14 ~dfanL~~e~~~~l~~GadwlHl 36 (224)
T KOG3111|consen 14 SDFANLAAECKKMLDAGADWLHL 36 (224)
T ss_pred cchHHHHHHHHHHHHcCCCeEEE
Confidence 37999999999999999999988
No 222
>PRK05613 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=56.03 E-value=22 Score=34.95 Aligned_cols=85 Identities=11% Similarity=0.088 Sum_probs=50.9
Q ss_pred ccCCceeEEEEeeCCCCCCchHHHHHH-hhhHHHHcCCCEEEeC-CCC-C---CCCCCCCCcccCCCcCCCCCCHHHHHH
Q 021281 21 IRNGREILFQGFNWESCKHDWWRNLER-KVPDISKSGFTSVWLP-PAT-H---SFAPEGYLPQNLYSLNSSYGSEHLLKA 94 (314)
Q Consensus 21 ~~~~~~~i~q~F~w~~~~~g~~~gi~~-~ldyl~~lG~~~I~l~-Pi~-~---~~~~~gY~~~d~~~id~~~Gt~~df~~ 94 (314)
..+|+.||..-..+ -+... ....++..|++.+++. |.- + ..-......+-.-.+....|...++++
T Consensus 105 l~~Gd~VI~~~~~y--------~~t~~~~~~~l~~~Gi~v~~vd~~~d~e~l~~~l~~~tk~V~~e~~~Np~~~v~di~~ 176 (437)
T PRK05613 105 AGAGDHIVTSPRLY--------GGTETLFLVTLNRLGIEVTFVENPDDPESWQAAVQPNTKAFFGETFANPQADVLDIPA 176 (437)
T ss_pred cCCCCEEEECCCcc--------HHHHHHHHHHHHhcCeEEEEECCCCCHHHHHHhCCccCeEEEEECCCCCCCcccCHHH
Confidence 46677788765543 23322 2246688999999986 420 0 000111111111122223456789999
Q ss_pred HHHHHhhCCCEEEEeeeec
Q 021281 95 LLHKMKQHKVRAMADIVIN 113 (314)
Q Consensus 95 lv~~ah~~Gi~VilD~V~N 113 (314)
+.+.||++|+.||+|-+.-
T Consensus 177 I~~la~~~gi~livD~t~a 195 (437)
T PRK05613 177 VAEVAHRNQVPLIVDNTIA 195 (437)
T ss_pred HHHHHHHcCCeEEEECCCc
Confidence 9999999999999999853
No 223
>COG1809 (2R)-phospho-3-sulfolactate synthase (PSL synthase, CoM biosynthesis) [Coenzyme transport and metabolism]
Probab=55.98 E-value=27 Score=31.19 Aligned_cols=50 Identities=12% Similarity=0.315 Sum_probs=34.0
Q ss_pred HHHHHhhhHHHHcCCCEEEeCCCCCCCCCCCCCcccCCCcCCCCCCHHHHHHHHHHHhhCCCEEEEee
Q 021281 43 RNLERKVPDISKSGFTSVWLPPATHSFAPEGYLPQNLYSLNSSYGSEHLLKALLHKMKQHKVRAMADI 110 (314)
Q Consensus 43 ~gi~~~ldyl~~lG~~~I~l~Pi~~~~~~~gY~~~d~~~id~~~Gt~~df~~lv~~ah~~Gi~VilD~ 110 (314)
+.+.+-|.+.+++||++|.|+ .|.-+. +.++.++||+.+-+.|..|.-.+
T Consensus 90 ~kvdeyl~e~~~lGfe~iEIS--------~G~i~m----------~~eek~~lIe~a~d~Gf~vlsEv 139 (258)
T COG1809 90 DKVDEYLNEAKELGFEAIEIS--------NGTIPM----------STEEKCRLIERAVDEGFMVLSEV 139 (258)
T ss_pred ccHHHHHHHHHHcCccEEEec--------CCeeec----------chHHHHHHHHHHHhcccEEehhh
Confidence 344555666666777777654 233222 36889999999999999887543
No 224
>PRK07379 coproporphyrinogen III oxidase; Provisional
Probab=55.63 E-value=22 Score=34.53 Aligned_cols=33 Identities=9% Similarity=-0.021 Sum_probs=27.4
Q ss_pred CCCCHHHHHHHHHHHhhCCCE-EEEeeeeccccC
Q 021281 85 SYGSEHLLKALLHKMKQHKVR-AMADIVINHRVG 117 (314)
Q Consensus 85 ~~Gt~~df~~lv~~ah~~Gi~-VilD~V~NH~~~ 117 (314)
+--+.++..+.++.+++.|+. |-+|+.++.-+.
T Consensus 146 R~~~~~~~~~ai~~l~~~G~~~v~~dlI~GlPgq 179 (400)
T PRK07379 146 RSHRVKDIFAAVDLIHQAGIENFSLDLISGLPHQ 179 (400)
T ss_pred CCCCHHHHHHHHHHHHHcCCCeEEEEeecCCCCC
Confidence 344788999999999999999 789999886553
No 225
>PF00266 Aminotran_5: Aminotransferase class-V; InterPro: IPR000192 Aminotransferases share certain mechanistic features with other pyridoxal- phosphate dependent enzymes, such as the covalent binding of the pyridoxal- phosphate group to a lysine residue. On the basis of sequence similarity, these various enzymes can be grouped [] into subfamilies. This entry represents the class V aminotransferases and the related, though functionally distinct, cysteine desulfurases.; GO: 0008152 metabolic process; PDB: 3FFR_A 1N2T_B 1ELQ_A 1N31_A 1ELU_B 1QZ9_A 1VJO_A 3ISL_B 1BJO_B 1BJN_B ....
Probab=55.56 E-value=21 Score=33.77 Aligned_cols=83 Identities=11% Similarity=0.129 Sum_probs=55.6
Q ss_pred ccCCceeEEEEeeCCCCCCchHHHHHHhhhHHH-HcCCCEEEeCCCCCCCC---------CCCCCcccCCCcCCCCCCHH
Q 021281 21 IRNGREILFQGFNWESCKHDWWRNLERKVPDIS-KSGFTSVWLPPATHSFA---------PEGYLPQNLYSLNSSYGSEH 90 (314)
Q Consensus 21 ~~~~~~~i~q~F~w~~~~~g~~~gi~~~ldyl~-~lG~~~I~l~Pi~~~~~---------~~gY~~~d~~~id~~~Gt~~ 90 (314)
...|+.|++--.+ +-+...-+..+. ..|++..++..-....- .......-+..++..-|...
T Consensus 85 ~~~g~~vl~~~~~--------~~s~~~~~~~~~~~~g~~v~~i~~~~~~~~~~~~~~~~l~~~~~lv~~~~~~~~tG~~~ 156 (371)
T PF00266_consen 85 LKPGDEVLVTSNE--------HPSNRYPWEEIAKRKGAEVRVIPADPGGSLDLEDLEEALNPDTRLVSISHVENSTGVRN 156 (371)
T ss_dssp GTTTCEEEEEESS--------HHHHHHHHHHHHHHTTEEEEEEEEGTTSSCSHHHHHHHHHTTESEEEEESBETTTTBBS
T ss_pred ccccccccccccc--------ccccccccccccccchhhhccccccccchhhhhhhhhhhccccceEEeecccccccEEe
Confidence 5566666655555 445555555554 78888877744222210 13344444566778889999
Q ss_pred HHHHHHHHHhhCCCEEEEeee
Q 021281 91 LLKALLHKMKQHKVRAMADIV 111 (314)
Q Consensus 91 df~~lv~~ah~~Gi~VilD~V 111 (314)
+++++.+.||++|+.+++|.+
T Consensus 157 pi~~I~~~~~~~~~~~~vD~~ 177 (371)
T PF00266_consen 157 PIEEIAKLAHEYGALLVVDAA 177 (371)
T ss_dssp SHHHHHHHHHHTTSEEEEE-T
T ss_pred eeceehhhhhccCCceeEech
Confidence 999999999999999999986
No 226
>COG1242 Predicted Fe-S oxidoreductase [General function prediction only]
Probab=54.54 E-value=53 Score=30.44 Aligned_cols=54 Identities=6% Similarity=0.199 Sum_probs=40.4
Q ss_pred HHHHHHHHHHHhhCCCEEEEeeeeccccCCCCCCCCcCcCCCCCCCCCCCCCcccCCCCCccccCCCCCCCCCCCCCCCH
Q 021281 89 EHLLKALLHKMKQHKVRAMADIVINHRVGTTQGHGGKYNRYDGIPLSWDEHAVTSCTGGLGNGSTGDNFHGVPNIDHTQH 168 (314)
Q Consensus 89 ~~df~~lv~~ah~~Gi~VilD~V~NH~~~~~~~~~~~y~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~~p 168 (314)
.+++.+-|++|+++||+|..-+.++ .. -
T Consensus 167 ~~~y~dav~r~rkrgIkvc~HiI~G--------------------LP--------------------------------g 194 (312)
T COG1242 167 FACYVDAVKRLRKRGIKVCTHLING--------------------LP--------------------------------G 194 (312)
T ss_pred hHHHHHHHHHHHHcCCeEEEEEeeC--------------------CC--------------------------------C
Confidence 4678888899999999998755443 10 1
Q ss_pred HHHHHHHHHHHHHHHhCCCCEEEeccC
Q 021281 169 FVRKDIIAWLRWLRNTVGFQDFRFDFA 195 (314)
Q Consensus 169 ~v~~~l~~~~~~w~~~~gvDGfRlDaa 195 (314)
+-++.+++.++... ..||||+.+---
T Consensus 195 E~~~~mleTak~v~-~~~v~GIKlH~L 220 (312)
T COG1242 195 ETRDEMLETAKIVA-ELGVDGIKLHPL 220 (312)
T ss_pred CCHHHHHHHHHHHH-hcCCceEEEEEE
Confidence 35678888888665 999999998763
No 227
>PF00701 DHDPS: Dihydrodipicolinate synthetase family; InterPro: IPR002220 Dihydropicolinate synthase (DHDPS) is the key enzyme in lysine biosynthesis via the diaminopimelate pathway of prokaryotes, some phycomycetes and higher plants. The enzyme catalyses the condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a ping-pong mechanism in which pyruvate binds to the enzyme by forming a Schiff-base with a lysine residue []. Three other proteins are structurally related to DHDPS and probably also act via a similar catalytic mechanism. These are Escherichia coli N-acetylneuraminate lyase (4.1.3.3 from EC) (gene nanA), which catalyzes the condensation of N-acetyl-D-mannosamine and pyruvate to form N-acetylneuraminate; Rhizobium meliloti (Sinorhizobium meliloti) protein mosA [], which is involved in the biosynthesis of the rhizopine 3-o-methyl-scyllo-inosamine; and E. coli hypothetical protein yjhH. The sequences of DHDPS from different sources are well-conserved. The structure takes the form of a homotetramer, in which 2 monomers are related by an approximate 2-fold symmetry []. Each monomer comprises 2 domains: an 8-fold alpha-/beta-barrel, and a C-terminal alpha-helical domain. The fold resembles that of N-acetylneuraminate lyase. The active site lysine is located in the barrel domain, and has access via 2 channels on the C-terminal side of the barrel.; GO: 0016829 lyase activity, 0008152 metabolic process; PDB: 3B4U_B 3S8H_A 3QZE_B 1XXX_F 3L21_F 3IRD_A 3A5F_B 3G0S_B 3DAQ_C 3UQN_A ....
Probab=54.45 E-value=36 Score=31.18 Aligned_cols=82 Identities=11% Similarity=0.051 Sum_probs=51.2
Q ss_pred cccchhhcccccccCccccCCc-eeEEEEeeCCCCCCchHHHHHHhhhHHHHcCCCEEEeCCCCCCCCCCCCCcccCCCc
Q 021281 4 TSKGFDETNQQTDLGAVIRNGR-EILFQGFNWESCKHDWWRNLERKVPDISKSGFTSVWLPPATHSFAPEGYLPQNLYSL 82 (314)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~-~~i~q~F~w~~~~~g~~~gi~~~ldyl~~lG~~~I~l~Pi~~~~~~~gY~~~d~~~i 82 (314)
.++|.+|-..-..+.-...+++ .||.++-.-+ .+...+.+.+.+++|+++|.++|++. +..
T Consensus 49 ~~Lt~~Er~~l~~~~~~~~~~~~~vi~gv~~~s------t~~~i~~a~~a~~~Gad~v~v~~P~~------------~~~ 110 (289)
T PF00701_consen 49 YSLTDEERKELLEIVVEAAAGRVPVIAGVGANS------TEEAIELARHAQDAGADAVLVIPPYY------------FKP 110 (289)
T ss_dssp GGS-HHHHHHHHHHHHHHHTTSSEEEEEEESSS------HHHHHHHHHHHHHTT-SEEEEEESTS------------SSC
T ss_pred ccCCHHHHHHHHHHHHHHccCceEEEecCcchh------HHHHHHHHHHHhhcCceEEEEecccc------------ccc
Confidence 4555555544444444444443 4777776655 89999999999999999999887641 111
Q ss_pred CCCCCCHHHHHHHHHH-HhhCCCEEEE
Q 021281 83 NSSYGSEHLLKALLHK-MKQHKVRAMA 108 (314)
Q Consensus 83 d~~~Gt~~df~~lv~~-ah~~Gi~Vil 108 (314)
+.+++.+..++ |.+-++.||+
T Consensus 111 -----s~~~l~~y~~~ia~~~~~pi~i 132 (289)
T PF00701_consen 111 -----SQEELIDYFRAIADATDLPIII 132 (289)
T ss_dssp -----CHHHHHHHHHHHHHHSSSEEEE
T ss_pred -----hhhHHHHHHHHHHhhcCCCEEE
Confidence 34554444444 4445799987
No 228
>cd03413 CbiK_C Anaerobic cobalamin biosynthetic cobalt chelatase (CbiK), C-terminal domain. CbiK is part of the cobalt-early path for cobalamin biosynthesis. It catalyzes the insertion of cobalt into the oxidized form of precorrin-2, factor II (sirohydrochlorin), the second step of the anaerobic branch of vitamin B12 biosynthesis. CbiK belongs to the class II family of chelatases, and is a homomeric enzyme that does not require ATP for its enzymatic activity.
Probab=54.41 E-value=28 Score=26.97 Aligned_cols=56 Identities=14% Similarity=0.242 Sum_probs=35.3
Q ss_pred HHHHHhhhHHHHcCCCEEEeCCCCCCCCCCCCCcccCCCcCCCCCCHHHHHHHHHHHhhCCCEEEE
Q 021281 43 RNLERKVPDISKSGFTSVWLPPATHSFAPEGYLPQNLYSLNSSYGSEHLLKALLHKMKQHKVRAMA 108 (314)
Q Consensus 43 ~gi~~~ldyl~~lG~~~I~l~Pi~~~~~~~gY~~~d~~~id~~~Gt~~df~~lv~~ah~~Gi~Vil 108 (314)
-.+.+.++.+.+.|++.|+|.|++-..+.|- . .+|-.. ..+..+..+ .++|++|-.
T Consensus 42 P~i~~~l~~l~~~G~~~i~lvPl~L~~G~H~---~--~Dipge--~~~SW~~~l---~~~g~~v~~ 97 (103)
T cd03413 42 PGLDDVLAKLKKAGIKKVTLMPLMLVAGDHA---H--NDMAGD--EPDSWKSIL---EAAGIKVET 97 (103)
T ss_pred CCHHHHHHHHHHcCCCEEEEEehhheecccc---h--hcCCCC--CchhHHHHH---HHCCCeeEE
Confidence 3467777788999999999999997765442 1 112111 234455544 455888753
No 229
>PRK08599 coproporphyrinogen III oxidase; Provisional
Probab=54.36 E-value=28 Score=33.33 Aligned_cols=34 Identities=9% Similarity=0.007 Sum_probs=27.8
Q ss_pred CCCCCHHHHHHHHHHHhhCCCE-EEEeeeeccccC
Q 021281 84 SSYGSEHLLKALLHKMKQHKVR-AMADIVINHRVG 117 (314)
Q Consensus 84 ~~~Gt~~df~~lv~~ah~~Gi~-VilD~V~NH~~~ 117 (314)
.+-.+.++..+.|+.+++.|+. |-+|+.++.-+.
T Consensus 130 ~r~~~~~~~~~~i~~l~~~g~~~v~~dli~GlPgq 164 (377)
T PRK08599 130 GRTHNEEDVYEAIANAKKAGFDNISIDLIYALPGQ 164 (377)
T ss_pred CCCCCHHHHHHHHHHHHHcCCCcEEEeeecCCCCC
Confidence 3455788999999999999998 678999886554
No 230
>TIGR03392 FeS_syn_CsdA cysteine desulfurase, catalytic subunit CsdA. Members of this protein family are CsdS. This protein, found Escherichia coli, Yersinia pestis, Photorhabdus luminescens, and related species, and related to SufS, works together with and physically interacts with CsdE (a paralog of SufE). CsdA has cysteine desulfurase activity that is enhanced by CsdE, a sulfur acceptor protein. This gene pair, although involved in FeS cluster biosynthesis, is not found next to other such genes as are its paralogs from the Suf or Isc systems.
Probab=54.20 E-value=32 Score=32.80 Aligned_cols=62 Identities=15% Similarity=0.016 Sum_probs=40.5
Q ss_pred HHHHcCCCEEEeCCCCCCC---------CCCCCCcccCCCcCCCCCCHHHHHHHHHHHhhCCCEEEEeeee
Q 021281 51 DISKSGFTSVWLPPATHSF---------APEGYLPQNLYSLNSSYGSEHLLKALLHKMKQHKVRAMADIVI 112 (314)
Q Consensus 51 yl~~lG~~~I~l~Pi~~~~---------~~~gY~~~d~~~id~~~Gt~~df~~lv~~ah~~Gi~VilD~V~ 112 (314)
..+..|++.+++..-.... -...-...-...++...|+..+++++++.||++|+.|++|-+.
T Consensus 126 ~~~~~g~~v~~v~~~~~~~~~~~~l~~~i~~~t~lv~i~~~~n~tG~~~~~~~i~~~~~~~~~~~ivD~a~ 196 (398)
T TIGR03392 126 VAQQTGAKVVKLPIGADLLPDIRQLPELLTPRTRILALGQMSNVTGGCPDLARAITLAHQYGAVVVVDGAQ 196 (398)
T ss_pred HHHHcCcEEEEEecCCCCCcCHHHHHHHhccCceEEEEECccccccccCCHHHHHHHHHHcCCEEEEEhhh
Confidence 3467899888875321110 0011111112334566788889999999999999999999986
No 231
>PF01791 DeoC: DeoC/LacD family aldolase; InterPro: IPR002915 This family includes the enzyme deoxyribose-phosphate aldolase, which is involved in nucleotide metabolism. 2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde The family also includes a group of related bacterial proteins of unknown function, see examples Q57843 from SWISSPROT and P76143 from SWISSPROT.; GO: 0016829 lyase activity; PDB: 2A4A_A 1VCV_B 1P1X_A 1KTN_B 1JCL_A 1JCJ_A 1MZH_A 3GKF_D 3GLC_L 3GND_N ....
Probab=54.11 E-value=12 Score=33.29 Aligned_cols=25 Identities=4% Similarity=0.146 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHhhCCCEEEEeeeec
Q 021281 89 EHLLKALLHKMKQHKVRAMADIVIN 113 (314)
Q Consensus 89 ~~df~~lv~~ah~~Gi~VilD~V~N 113 (314)
.+++++++++||+.||+||+...+.
T Consensus 111 ~~~i~~v~~~~~~~gl~vIlE~~l~ 135 (236)
T PF01791_consen 111 IEEIAAVVEECHKYGLKVILEPYLR 135 (236)
T ss_dssp HHHHHHHHHHHHTSEEEEEEEECEC
T ss_pred HHHHHHHHHHHhcCCcEEEEEEecC
Confidence 3689999999999999999975544
No 232
>PRK06294 coproporphyrinogen III oxidase; Provisional
Probab=54.05 E-value=27 Score=33.50 Aligned_cols=64 Identities=13% Similarity=0.129 Sum_probs=42.0
Q ss_pred HHhhhHHHHcCCCEEEeCCCCCCCCCCCCCcccCCCcCCCCCCHHHHHHHHHHHhhCCCE-EEEeeeeccccC
Q 021281 46 ERKVPDISKSGFTSVWLPPATHSFAPEGYLPQNLYSLNSSYGSEHLLKALLHKMKQHKVR-AMADIVINHRVG 117 (314)
Q Consensus 46 ~~~ldyl~~lG~~~I~l~Pi~~~~~~~gY~~~d~~~id~~~Gt~~df~~lv~~ah~~Gi~-VilD~V~NH~~~ 117 (314)
.++|+.++++||+.|.|.. ++. +..-+..++ +--+.++..+.|+.|++.|+. |-+|+.++.-+.
T Consensus 103 ~~~l~~l~~~G~nrislGv--QS~-----~~~~L~~l~-R~~~~~~~~~ai~~~~~~g~~~v~~Dli~GlPgq 167 (370)
T PRK06294 103 ESYIRALALTGINRISIGV--QTF-----DDPLLKLLG-RTHSSSKAIDAVQECSEHGFSNLSIDLIYGLPTQ 167 (370)
T ss_pred HHHHHHHHHCCCCEEEEcc--ccC-----CHHHHHHcC-CCCCHHHHHHHHHHHHHcCCCeEEEEeecCCCCC
Confidence 4567777777777776653 111 111122233 333678899999999999996 889999886554
No 233
>cd06549 GH18_trifunctional GH18 domain of an uncharacterized family of bacterial proteins, which share a common three-domain architecture: an N-terminal glycosyl hydrolase family 18 (GH18) domain, a glycosyl transferase family 2 domain, and a C-terminal polysaccharide deacetylase domain.
Probab=54.05 E-value=29 Score=32.11 Aligned_cols=47 Identities=13% Similarity=0.081 Sum_probs=36.3
Q ss_pred CCHHHHHHHHHHHHHHHHhCCCCEEEeccCCCCC------HHHHHHHHHhhCC
Q 021281 166 TQHFVRKDIIAWLRWLRNTVGFQDFRFDFARGYS------AKYVKEYIEGARP 212 (314)
Q Consensus 166 ~~p~v~~~l~~~~~~w~~~~gvDGfRlDaa~~i~------~~f~~~~~~~~~~ 212 (314)
.+|..|+.+++.+..+++++|+||+-+|--.-.+ ..|++++..+++.
T Consensus 84 ~~~~~R~~fi~~iv~~~~~~~~dGidiD~E~~~~~d~~~~~~fl~eL~~~l~~ 136 (298)
T cd06549 84 ADPSARAKFIANIAAYLERNQADGIVLDFEELPADDLPKYVAFLSELRRRLPA 136 (298)
T ss_pred cCHHHHHHHHHHHHHHHHHhCCCCEEEecCCCChhHHHHHHHHHHHHHHHhhh
Confidence 4688999999999888899999999999743221 3577777777653
No 234
>KOG0257 consensus Kynurenine aminotransferase, glutamine transaminase K [Amino acid transport and metabolism]
Probab=53.68 E-value=30 Score=33.67 Aligned_cols=88 Identities=18% Similarity=0.187 Sum_probs=55.5
Q ss_pred ccCCceeEEEEeeCCCCCCchHHHHHHhhhHHHHcCCCEEEeCCCCCCC-CCCCCCcccCCCcCC---------------
Q 021281 21 IRNGREILFQGFNWESCKHDWWRNLERKVPDISKSGFTSVWLPPATHSF-APEGYLPQNLYSLNS--------------- 84 (314)
Q Consensus 21 ~~~~~~~i~q~F~w~~~~~g~~~gi~~~ldyl~~lG~~~I~l~Pi~~~~-~~~gY~~~d~~~id~--------------- 84 (314)
..+|++||++-=.|+ .-.+-++=+|.+-|.+++.-+.. .+..-.+.|+..++.
T Consensus 114 ~~~GDeVii~eP~fd-----------~Y~~~~~maG~tpv~v~~~~~~g~~~s~~~~~D~~~le~~~t~kTk~Ii~ntPh 182 (420)
T KOG0257|consen 114 LNPGDEVIVFEPFFD-----------CYIPQVVMAGGTPVFVPLKPKEGNVSSSDWTLDPEELESKITEKTKAIILNTPH 182 (420)
T ss_pred cCCCCEEEEecCcch-----------hhhhHHhhcCCcceeeccccccccccCccccCChHHHHhhccCCccEEEEeCCC
Confidence 345566666544444 23344455666666665552221 233444555555442
Q ss_pred ----CCCCHHHHHHHHHHHhhCCCEEEEeeeeccccCCC
Q 021281 85 ----SYGSEHLLKALLHKMKQHKVRAMADIVINHRVGTT 119 (314)
Q Consensus 85 ----~~Gt~~df~~lv~~ah~~Gi~VilD~V~NH~~~~~ 119 (314)
+.-++++|.++++-|.++|+=||.|=|+.|...+.
T Consensus 183 NPtGkvfsReeLe~ia~l~~k~~~lvisDevYe~~v~d~ 221 (420)
T KOG0257|consen 183 NPTGKVFSREELERIAELCKKHGLLVISDEVYEWLVYDG 221 (420)
T ss_pred CCcCcccCHHHHHHHHHHHHHCCEEEEEhhHhHHHhhCC
Confidence 23368999999999999999999999999877654
No 235
>PRK08195 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase,; Validated
Probab=53.58 E-value=2e+02 Score=27.21 Aligned_cols=39 Identities=15% Similarity=0.194 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHhCCCCEEEe-ccCCCCCHHHHHHHHHhhC
Q 021281 172 KDIIAWLRWLRNTVGFQDFRF-DFARGYSAKYVKEYIEGAR 211 (314)
Q Consensus 172 ~~l~~~~~~w~~~~gvDGfRl-Daa~~i~~~f~~~~~~~~~ 211 (314)
+++.+.++... ++|+|.+++ |++-.+.++...+++..++
T Consensus 144 e~l~~~a~~~~-~~Ga~~i~i~DT~G~~~P~~v~~~v~~l~ 183 (337)
T PRK08195 144 EKLAEQAKLME-SYGAQCVYVVDSAGALLPEDVRDRVRALR 183 (337)
T ss_pred HHHHHHHHHHH-hCCCCEEEeCCCCCCCCHHHHHHHHHHHH
Confidence 56777777776 899999995 8888888877777666553
No 236
>cd01335 Radical_SAM Radical SAM superfamily. Enzymes of this family generate radicals by combining a 4Fe-4S cluster and S-adenosylmethionine (SAM) in close proximity. They are characterized by a conserved CxxxCxxC motif, which coordinates the conserved iron-sulfur cluster. Mechanistically, they share the transfer of a single electron from the iron-sulfur cluster to SAM, which leads to its reductive cleavage to methionine and a 5'-deoxyadenosyl radical, which, in turn, abstracts a hydrogen from the appropriately positioned carbon atom. Depending on the enzyme, SAM is consumed during this process or it is restored and reused. Radical SAM enzymes catalyze steps in metabolism, DNA repair, the biosynthesis of vitamins and coenzymes, and the biosynthesis of many antibiotics. Examples are biotin synthase (BioB), lipoyl synthase (LipA), pyruvate formate-lyase (PFL), coproporphyrinogen oxidase (HemN), lysine 2,3-aminomutase (LAM), anaerobic ribonucleotide reductase (ARR), and MoaA, an enzyme o
Probab=53.55 E-value=24 Score=29.11 Aligned_cols=65 Identities=11% Similarity=0.043 Sum_probs=40.2
Q ss_pred HHhhhHHHHcCCCEEEeCCCCCCCCCCCCCcccCCCcCCCCCCHHHHHHHHHHHhhCCCEEEEeeeeccccC
Q 021281 46 ERKVPDISKSGFTSVWLPPATHSFAPEGYLPQNLYSLNSSYGSEHLLKALLHKMKQHKVRAMADIVINHRVG 117 (314)
Q Consensus 46 ~~~ldyl~~lG~~~I~l~Pi~~~~~~~gY~~~d~~~id~~~Gt~~df~~lv~~ah~~Gi~VilD~V~NH~~~ 117 (314)
.+.++.|++.|+..|+++-= + .+...+..+...-++.++..+.+++++++|+.|.+.+++..-..
T Consensus 88 ~~~~~~l~~~g~~~i~i~le--~-----~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~g~~~~ 152 (204)
T cd01335 88 EELLKELKELGLDGVGVSLD--S-----GDEEVADKIRGSGESFKERLEALKELREAGLGLSTTLLVGLGDE 152 (204)
T ss_pred HHHHHHHHhCCCceEEEEcc--c-----CCHHHHHHHhcCCcCHHHHHHHHHHHHHcCCCceEEEEEecCCC
Confidence 34455555556666655421 1 11111222223556788999999999999999999998875443
No 237
>PRK05799 coproporphyrinogen III oxidase; Provisional
Probab=53.15 E-value=32 Score=32.82 Aligned_cols=33 Identities=3% Similarity=-0.090 Sum_probs=27.1
Q ss_pred CCCCHHHHHHHHHHHhhCCCE-EEEeeeeccccC
Q 021281 85 SYGSEHLLKALLHKMKQHKVR-AMADIVINHRVG 117 (314)
Q Consensus 85 ~~Gt~~df~~lv~~ah~~Gi~-VilD~V~NH~~~ 117 (314)
+-.+.++..+.++.+++.|++ |-+|+.++--+.
T Consensus 130 R~~~~~~~~~ai~~l~~~g~~~v~~dli~GlPgq 163 (374)
T PRK05799 130 RIHTFEEFLENYKLARKLGFNNINVDLMFGLPNQ 163 (374)
T ss_pred CCCCHHHHHHHHHHHHHcCCCcEEEEeecCCCCC
Confidence 444789999999999999997 779999885554
No 238
>smart00518 AP2Ec AP endonuclease family 2. These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites
Probab=53.14 E-value=43 Score=30.16 Aligned_cols=53 Identities=13% Similarity=0.073 Sum_probs=37.4
Q ss_pred HHHHhhhHHHHcCCCEEEeCCCCCCCCCCCCCcccCCCcCCCCCCHHHHHHHHHHHhhCCCEEEE
Q 021281 44 NLERKVPDISKSGFTSVWLPPATHSFAPEGYLPQNLYSLNSSYGSEHLLKALLHKMKQHKVRAMA 108 (314)
Q Consensus 44 gi~~~ldyl~~lG~~~I~l~Pi~~~~~~~gY~~~d~~~id~~~Gt~~df~~lv~~ah~~Gi~Vil 108 (314)
++.+.++++.++|++.|.|.+.-+. .+... .-+.++++++.+.+.+.||+|.+
T Consensus 11 ~~~~~~~~~~~~G~~~vel~~~~~~----~~~~~--------~~~~~~~~~l~~~~~~~gl~ls~ 63 (273)
T smart00518 11 GLYKAFIEAVDIGARSFQLFLGNPR----SWKGV--------RLSEETAEKFKEALKENNIDVSV 63 (273)
T ss_pred cHhHHHHHHHHcCCCEEEEECCCCC----CCCCC--------CCCHHHHHHHHHHHHHcCCCEEE
Confidence 5778899999999999998543221 11111 23567788888888889998664
No 239
>cd00287 ribokinase_pfkB_like ribokinase/pfkB superfamily: Kinases that accept a wide variety of substrates, including carbohydrates and aromatic small molecules, all are phosphorylated at a hydroxyl group. The superfamily includes ribokinase, fructokinase, ketohexokinase, 2-dehydro-3-deoxygluconokinase, 1-phosphofructokinase, the minor 6-phosphofructokinase (PfkB), inosine-guanosine kinase, and adenosine kinase. Even though there is a high degree of structural conservation within this superfamily, their multimerization level varies widely, monomeric (e.g. adenosine kinase), dimeric (e.g. ribokinase), and trimeric (e.g THZ kinase).
Probab=53.06 E-value=26 Score=29.39 Aligned_cols=50 Identities=8% Similarity=0.097 Sum_probs=34.2
Q ss_pred HHHHcCCCEEEeCCCCCCCCCCCCCcccCCCcCCCCCCHHHHHHHHHHHhhCCCEEEEeeeec
Q 021281 51 DISKSGFTSVWLPPATHSFAPEGYLPQNLYSLNSSYGSEHLLKALLHKMKQHKVRAMADIVIN 113 (314)
Q Consensus 51 yl~~lG~~~I~l~Pi~~~~~~~gY~~~d~~~id~~~Gt~~df~~lv~~ah~~Gi~VilD~V~N 113 (314)
-|+.||.....++ .|...++...-..+.+.++++.|++.|++|++|.+.-
T Consensus 45 ~l~~LG~~~~~~~-------------~~~v~i~~~~~~~~~~~~~~~~~~~~~~~v~~D~~~~ 94 (196)
T cd00287 45 ALARLGVSVTLVG-------------ADAVVISGLSPAPEAVLDALEEARRRGVPVVLDPGPR 94 (196)
T ss_pred HHHHCCCcEEEEE-------------ccEEEEecccCcHHHHHHHHHHHHHcCCeEEEeCCcc
Confidence 4566788777776 2233333222114778999999999999999998643
No 240
>TIGR00262 trpA tryptophan synthase, alpha subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences.
Probab=53.04 E-value=45 Score=30.30 Aligned_cols=25 Identities=20% Similarity=0.175 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHhhCCCEEEEeeeec
Q 021281 89 EHLLKALLHKMKQHKVRAMADIVIN 113 (314)
Q Consensus 89 ~~df~~lv~~ah~~Gi~VilD~V~N 113 (314)
.++..+++++|+++|++.++=+.++
T Consensus 126 ~ee~~~~~~~~~~~gl~~i~lv~P~ 150 (256)
T TIGR00262 126 LEESGDLVEAAKKHGVKPIFLVAPN 150 (256)
T ss_pred hHHHHHHHHHHHHCCCcEEEEECCC
Confidence 3778999999999999988644443
No 241
>PLN02814 beta-glucosidase
Probab=53.01 E-value=74 Score=32.01 Aligned_cols=63 Identities=14% Similarity=0.254 Sum_probs=43.4
Q ss_pred hHHHHHHhhhHHHHcCCCEEEeCCCCCCCCCCCCCcccCCCcCCCCCCHHHHHHHHHHHhhCCCEEEEee
Q 021281 41 WWRNLERKVPDISKSGFTSVWLPPATHSFAPEGYLPQNLYSLNSSYGSEHLLKALLHKMKQHKVRAMADI 110 (314)
Q Consensus 41 ~~~gi~~~ldyl~~lG~~~I~l~Pi~~~~~~~gY~~~d~~~id~~~Gt~~df~~lv~~ah~~Gi~VilD~ 110 (314)
.+....+-++-+|+||+++-=++=-....-+.|-. .+| --..+=.++||++|.++||+.|+=+
T Consensus 75 ~Yhry~EDI~L~k~lG~~ayRfSIsWsRI~P~G~g-----~~N--~~Gl~fY~~lId~l~~~GI~P~VTL 137 (504)
T PLN02814 75 GYHKYKEDVKLMAEMGLESFRFSISWSRLIPNGRG-----LIN--PKGLLFYKNLIKELRSHGIEPHVTL 137 (504)
T ss_pred HHHhhHHHHHHHHHcCCCEEEEeccHhhcCcCCCC-----CCC--HHHHHHHHHHHHHHHHcCCceEEEe
Confidence 88999999999999999998664322111122210 121 1234557999999999999999844
No 242
>cd08560 GDPD_EcGlpQ_like_1 Glycerophosphodiester phosphodiesterase domain similar to Escherichia coli periplasmic phosphodiesterase (GlpQ) include uncharacterized proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in a group of uncharacterized glycerophosphodiester phosphodiesterases (GP-GDE, EC 3.1.4.46) and their hypothetical homologs. Members in this subfamily show high sequence similarity to Escherichia coli periplasmic phosphodiesterase GlpQ, which catalyzes the Ca2+-dependent degradation of periplasmic glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols.
Probab=51.98 E-value=18 Score=34.71 Aligned_cols=19 Identities=5% Similarity=-0.081 Sum_probs=16.4
Q ss_pred HHHHHHHHhhCCCEEEEee
Q 021281 92 LKALLHKMKQHKVRAMADI 110 (314)
Q Consensus 92 f~~lv~~ah~~Gi~VilD~ 110 (314)
...||++||++|++|+.=-
T Consensus 280 ~~~~v~~Ah~~GL~V~~WT 298 (356)
T cd08560 280 PSEYAKAAKAAGLDIITWT 298 (356)
T ss_pred CHHHHHHHHHcCCEEEEEE
Confidence 4689999999999999843
No 243
>PF07071 DUF1341: Protein of unknown function (DUF1341); InterPro: IPR010763 Members of this family of relatively uncommon proteins are found in both Gram-positive (e.g. Enterococcus faecalis) and Gram-negative (e.g. Aeromonas hydrophila) bacteria, as part of a cluster of conserved proteins. The function is unknown.; PDB: 3NZR_D 3LM7_A 3M0Z_B 3M6Y_A 3N73_A 3MUX_A.
Probab=51.68 E-value=45 Score=29.30 Aligned_cols=44 Identities=18% Similarity=0.194 Sum_probs=28.5
Q ss_pred HHHhhhHHHHcCCCEEEeCCCCCCCCCCCCCcccCCCcCCCCCCHHHHHHHHHHHhhCCCEE
Q 021281 45 LERKVPDISKSGFTSVWLPPATHSFAPEGYLPQNLYSLNSSYGSEHLLKALLHKMKQHKVRA 106 (314)
Q Consensus 45 i~~~ldyl~~lG~~~I~l~Pi~~~~~~~gY~~~d~~~id~~~Gt~~df~~lv~~ah~~Gi~V 106 (314)
++..+..|++||...|=..|+- | +-..++|+.+.++|-++|+.+
T Consensus 137 vetAiaml~dmG~~SiKffPm~------G------------l~~leE~~avAkA~a~~g~~l 180 (218)
T PF07071_consen 137 VETAIAMLKDMGGSSIKFFPMG------G------------LKHLEELKAVAKACARNGFTL 180 (218)
T ss_dssp HHHHHHHHHHTT--EEEE---T------T------------TTTHHHHHHHHHHHHHCT-EE
T ss_pred HHHHHHHHHHcCCCeeeEeecC------C------------cccHHHHHHHHHHHHHcCcee
Confidence 4667889999999999988863 2 113578888888888888776
No 244
>PF02581 TMP-TENI: Thiamine monophosphate synthase/TENI; InterPro: IPR003733 Thiamine monophosphate synthase (TMP) (2.5.1.3 from EC) catalyzes the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl)thiazole phosphate to yield thiamine phosphate in the thiamine biosynthesis pathway []. TENI, a protein from Bacillus subtilis that regulates the production of several extracellular enzymes by reducing alkaline protease production belongs to this group [].; GO: 0004789 thiamine-phosphate diphosphorylase activity, 0009228 thiamine biosynthetic process; PDB: 3NL5_A 3NL2_A 3NM1_A 3NM3_C 3NL6_B 3NL3_A 3CEU_A 3O63_B 3QH2_C 1YAD_D ....
Probab=51.55 E-value=27 Score=29.70 Aligned_cols=47 Identities=17% Similarity=0.200 Sum_probs=29.5
Q ss_pred hhHHHHcCCCEEEeCCCCCCCCCCCCCcccCCCcCCCCCCHHHHHHHHHHHhhCCCEEEE
Q 021281 49 VPDISKSGFTSVWLPPATHSFAPEGYLPQNLYSLNSSYGSEHLLKALLHKMKQHKVRAMA 108 (314)
Q Consensus 49 ldyl~~lG~~~I~l~Pi~~~~~~~gY~~~d~~~id~~~Gt~~df~~lv~~ah~~Gi~Vil 108 (314)
+..+.+.|+++|-++|+|++.+--++.+. +.+.|+++.+.+. +.|+.
T Consensus 108 ~~~a~~~g~dYv~~gpvf~T~sk~~~~~~----------g~~~l~~~~~~~~---~pv~A 154 (180)
T PF02581_consen 108 AREAEELGADYVFLGPVFPTSSKPGAPPL----------GLDGLREIARASP---IPVYA 154 (180)
T ss_dssp HHHHHHCTTSEEEEETSS--SSSSS-TTC----------HHHHHHHHHHHTS---SCEEE
T ss_pred HHHhhhcCCCEEEECCccCCCCCcccccc----------CHHHHHHHHHhCC---CCEEE
Confidence 66667899999999999988754444332 2455666655554 66665
No 245
>PRK05994 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=51.13 E-value=33 Score=33.56 Aligned_cols=85 Identities=9% Similarity=0.104 Sum_probs=50.2
Q ss_pred ccCCceeEEEEeeCCCCCCchHHHHHHhhh-HHHHcCCCEEEeCCCCCC----CCCCCCCcccCCCcCCCCCCHHHHHHH
Q 021281 21 IRNGREILFQGFNWESCKHDWWRNLERKVP-DISKSGFTSVWLPPATHS----FAPEGYLPQNLYSLNSSYGSEHLLKAL 95 (314)
Q Consensus 21 ~~~~~~~i~q~F~w~~~~~g~~~gi~~~ld-yl~~lG~~~I~l~Pi~~~----~~~~gY~~~d~~~id~~~Gt~~df~~l 95 (314)
.++|+.||+.... |-+....+. .++..|+..+++.+.-.. .-...-..+=.-.+....|..-+++++
T Consensus 99 l~pGd~VIv~~~~--------y~~t~~~~~~~~~~~G~~v~~vd~~d~~~l~~ai~~~tklV~vesp~NptG~v~dl~~I 170 (427)
T PRK05994 99 LQPGDEFIAARKL--------YGGSINQFGHAFKSFGWQVRWADADDPASFERAITPRTKAIFIESIANPGGTVTDIAAI 170 (427)
T ss_pred hCCCCEEEEecCc--------chhHHHHHHHHHHhcCcEEEEECCCCHHHHHHhcCcCCeEEEEECCCCCCCeecCHHHH
Confidence 4567778876544 223333332 356788888877542100 001111111112234456777789999
Q ss_pred HHHHhhCCCEEEEeeeec
Q 021281 96 LHKMKQHKVRAMADIVIN 113 (314)
Q Consensus 96 v~~ah~~Gi~VilD~V~N 113 (314)
++.||++|+.||+|-+.-
T Consensus 171 ~~la~~~gi~livD~a~a 188 (427)
T PRK05994 171 AEVAHRAGLPLIVDNTLA 188 (427)
T ss_pred HHHHHHcCCEEEEECCcc
Confidence 999999999999999853
No 246
>cd00945 Aldolase_Class_I Class I aldolases. The class I aldolases use an active-site lysine which stablilzes a reaction intermediates via Schiff base formation, and have TIM beta/alpha barrel fold. The members of this family include 2-keto-3-deoxy-6-phosphogluconate (KDPG) and 2-keto-4-hydroxyglutarate (KHG) aldolases, transaldolase, dihydrodipicolinate synthase sub-family, Type I 3-dehydroquinate dehydratase, DeoC and DhnA proteins, and metal-independent fructose-1,6-bisphosphate aldolase. Although structurally similar, the class II aldolases use a different mechanism and are believed to have an independent evolutionary origin.
Probab=50.91 E-value=44 Score=28.07 Aligned_cols=57 Identities=7% Similarity=-0.072 Sum_probs=37.8
Q ss_pred HHHHHHhhhHHHHcCCCEEEeCCCCCCCCCCCCCcccCCCcCCCCCCHHHHHHHHHHHh---hCCCEEEEeeeec
Q 021281 42 WRNLERKVPDISKSGFTSVWLPPATHSFAPEGYLPQNLYSLNSSYGSEHLLKALLHKMK---QHKVRAMADIVIN 113 (314)
Q Consensus 42 ~~gi~~~ldyl~~lG~~~I~l~Pi~~~~~~~gY~~~d~~~id~~~Gt~~df~~lv~~ah---~~Gi~VilD~V~N 113 (314)
.+...+.+.+.+++|+++|-+.|++... + + ++.+.+.+.++++. +.++.||+...+.
T Consensus 64 ~~~~~~~a~~a~~~Gad~i~v~~~~~~~------~------~---~~~~~~~~~~~~i~~~~~~~~pv~iy~~p~ 123 (201)
T cd00945 64 TEVKVAEVEEAIDLGADEIDVVINIGSL------K------E---GDWEEVLEEIAAVVEAADGGLPLKVILETR 123 (201)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeccHHHH------h------C---CCHHHHHHHHHHHHHHhcCCceEEEEEECC
Confidence 7888899999999999999998765211 1 0 03444444444433 4599999966544
No 247
>cd04735 OYE_like_4_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 4. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=50.70 E-value=1e+02 Score=29.26 Aligned_cols=29 Identities=21% Similarity=0.164 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHhhCCCEEEEeeeeccccCCC
Q 021281 89 EHLLKALLHKMKQHKVRAMADIVINHRVGTT 119 (314)
Q Consensus 89 ~~df~~lv~~ah~~Gi~VilD~V~NH~~~~~ 119 (314)
.+.+|++++++|++|-++++ =++|.|...
T Consensus 77 i~~~~~l~~~vh~~G~~i~~--QL~h~G~~~ 105 (353)
T cd04735 77 IPGLRKLAQAIKSKGAKAIL--QIFHAGRMA 105 (353)
T ss_pred hHHHHHHHHHHHhCCCeEEE--EecCCCCCC
Confidence 57899999999999999985 458877653
No 248
>COG0826 Collagenase and related proteases [Posttranslational modification, protein turnover, chaperones]
Probab=50.69 E-value=52 Score=31.44 Aligned_cols=52 Identities=10% Similarity=0.071 Sum_probs=34.6
Q ss_pred HhhhHHHHcCCCEEEeCCCCCCCCCCCCCcccCCCcCCCCCCHHHHHHHHHHHhhCCCEEEEe
Q 021281 47 RKVPDISKSGFTSVWLPPATHSFAPEGYLPQNLYSLNSSYGSEHLLKALLHKMKQHKVRAMAD 109 (314)
Q Consensus 47 ~~ldyl~~lG~~~I~l~Pi~~~~~~~gY~~~d~~~id~~~Gt~~df~~lv~~ah~~Gi~VilD 109 (314)
+++..+-+.|.++||+.=- .. +..+.+ .+ | +.++|++.|+.||++|.|+++=
T Consensus 17 ~~l~~ai~~GADaVY~G~~-~~-~~R~~a-~n-------f-s~~~l~e~i~~ah~~gkk~~V~ 68 (347)
T COG0826 17 EDLKAAIAAGADAVYIGEK-EF-GLRRRA-LN-------F-SVEDLAEAVELAHSAGKKVYVA 68 (347)
T ss_pred HHHHHHHHcCCCEEEeCCc-cc-cccccc-cc-------C-CHHHHHHHHHHHHHcCCeEEEE
Confidence 3444555678999998732 11 122222 21 1 5688999999999999999873
No 249
>TIGR03235 DNA_S_dndA cysteine desulfurase DndA. This model describes DndA, a protein related to IscS and part of a larger family of cysteine desulfurases. It is encoded, typically, divergently from a conserved, sparsely distributed operon for sulfur modification of DNA. This modification system is designated dnd, after the phenotype of DNA degradation during electrophoresis. The system is sporadically distributed in bacteria, much like some restriction enzyme operons. DndB is described as a putative ATPase.
Probab=50.22 E-value=51 Score=30.81 Aligned_cols=72 Identities=15% Similarity=0.269 Sum_probs=44.2
Q ss_pred HHHHhhhHHHHcCCCEEEeCCCCCCC---------CCCCCCcccCCCcCCCCCCHHHHHHHHHHHhhCCCEEEEeee--e
Q 021281 44 NLERKVPDISKSGFTSVWLPPATHSF---------APEGYLPQNLYSLNSSYGSEHLLKALLHKMKQHKVRAMADIV--I 112 (314)
Q Consensus 44 gi~~~ldyl~~lG~~~I~l~Pi~~~~---------~~~gY~~~d~~~id~~~Gt~~df~~lv~~ah~~Gi~VilD~V--~ 112 (314)
.+...+..++..|++.+.+..--... -...-...-...++..-|...+++++++.||++|+.|++|-+ +
T Consensus 100 s~~~~~~~~~~~G~~v~~v~~~~~~~~d~~~l~~~l~~~~~lv~~~~~~n~tG~~~~~~~I~~l~~~~~~~~ivD~a~~~ 179 (353)
T TIGR03235 100 AVLEPIRALERNGFTVTYLPVDESGRIDVDELADAIRPDTLLVSIMHVNNETGSIQPIREIAEVLEAHEAFFHVDAAQVV 179 (353)
T ss_pred HHHHHHHHHHhcCCEEEEEccCCCCcCCHHHHHHhCCCCCEEEEEEcccCCceeccCHHHHHHHHHHcCCEEEEEchhhc
Confidence 34444455677798888775321110 001111111223445568888899999999999999999997 4
Q ss_pred ccc
Q 021281 113 NHR 115 (314)
Q Consensus 113 NH~ 115 (314)
.+.
T Consensus 180 g~~ 182 (353)
T TIGR03235 180 GKI 182 (353)
T ss_pred CCc
Confidence 444
No 250
>cd02874 GH18_CFLE_spore_hydrolase Cortical fragment-lytic enzyme (CFLE) is a peptidoglycan hydrolase involved in bacterial endospore germination. CFLE is expressed as an inactive preprotein (called SleB) in the forespore compartment of sporulating cells. SleB translocates across the forespore inner membrane and is deposited as a mature enzyme in the cortex layer of the spore. As part of a sensory mechanism capable of initiating germination, CFLE degrades a spore-specific peptidoglycan constituent called muramic-acid delta-lactam that comprises the outer cortex. CFLE has a C-terminal glycosyl hydrolase family 18 (GH18) catalytic domain as well as two N-terminal LysM peptidoglycan-binding domains. In addition to SleB, this family includes YaaH, YdhD, and YvbX from Bacillus subtilis.
Probab=50.07 E-value=36 Score=31.54 Aligned_cols=46 Identities=15% Similarity=0.299 Sum_probs=35.8
Q ss_pred CCHHHHHHHHHHHHHHHHhCCCCEEEeccCCCCC------HHHHHHHHHhhC
Q 021281 166 TQHFVRKDIIAWLRWLRNTVGFQDFRFDFARGYS------AKYVKEYIEGAR 211 (314)
Q Consensus 166 ~~p~v~~~l~~~~~~w~~~~gvDGfRlDaa~~i~------~~f~~~~~~~~~ 211 (314)
.+|..|+.+++.+..+++++|+||+-+|--.--+ ..|++++..+++
T Consensus 83 ~~~~~r~~fi~~iv~~l~~~~~DGidiDwE~~~~~d~~~~~~fl~~lr~~l~ 134 (313)
T cd02874 83 SNPEARQRLINNILALAKKYGYDGVNIDFENVPPEDREAYTQFLRELSDRLH 134 (313)
T ss_pred cCHHHHHHHHHHHHHHHHHhCCCcEEEecccCCHHHHHHHHHHHHHHHHHhh
Confidence 4688999999999998989999999999754222 357777777765
No 251
>TIGR02666 moaA molybdenum cofactor biosynthesis protein A, bacterial. The model for this family describes molybdenum cofactor biosynthesis protein A, or MoaA, as found in bacteria. It does not include the family of probable functional equivalent proteins from the archaea. MoaA works together with MoaC to synthesize precursor Z from guanine.
Probab=50.06 E-value=52 Score=30.84 Aligned_cols=60 Identities=13% Similarity=0.203 Sum_probs=38.1
Q ss_pred HHhhhHHHHcCCCEEEeCCCCCCCCCCCCCcccCCCcCCCCCCHHHHHHHHHHHhhCCCE-EEEeeee
Q 021281 46 ERKVPDISKSGFTSVWLPPATHSFAPEGYLPQNLYSLNSSYGSEHLLKALLHKMKQHKVR-AMADIVI 112 (314)
Q Consensus 46 ~~~ldyl~~lG~~~I~l~Pi~~~~~~~gY~~~d~~~id~~~Gt~~df~~lv~~ah~~Gi~-VilD~V~ 112 (314)
.+.++.|++.|++.|.++- ++..+.-|..+...-|+.+...+-|++|.+.|+. |-+-+|+
T Consensus 102 ~~~~~~L~~~gl~~v~ISl-------d~~~~~~~~~i~~~~~~~~~vl~~i~~l~~~G~~~v~in~vv 162 (334)
T TIGR02666 102 ARHAKDLKEAGLKRVNVSL-------DSLDPERFAKITRRGGRLEQVLAGIDAALAAGLEPVKLNTVV 162 (334)
T ss_pred HHHHHHHHHcCCCeEEEec-------ccCCHHHhheeCCCCCCHHHHHHHHHHHHHcCCCcEEEEEEE
Confidence 3455666666666666543 2222222334443446888999999999999997 7776665
No 252
>COG1640 MalQ 4-alpha-glucanotransferase [Carbohydrate transport and metabolism]
Probab=49.94 E-value=47 Score=33.47 Aligned_cols=21 Identities=19% Similarity=0.246 Sum_probs=16.1
Q ss_pred cCCceeeccCCCCCCCCCCCC
Q 021281 288 WPSRAVTFLDNHDTGSTQVPH 308 (314)
Q Consensus 288 ~p~~~v~F~~NHD~~R~~~~~ 308 (314)
.|.++|+++.+||++...+.|
T Consensus 393 ~~~nsva~tsTHD~ptl~gww 413 (520)
T COG1640 393 YPPNSVATTSTHDLPTLRGWW 413 (520)
T ss_pred cccceeEEeccCCChhHHHHH
Confidence 556889999999998765443
No 253
>PRK08574 cystathionine gamma-synthase; Provisional
Probab=49.85 E-value=23 Score=34.09 Aligned_cols=84 Identities=11% Similarity=0.074 Sum_probs=46.5
Q ss_pred ccCCceeEEEEeeCCCCCCchHHHHHHhhhHHHHcCCCEEEeCCCCCCC----CCCCCCcccCCCcCCCCCCHHHHHHHH
Q 021281 21 IRNGREILFQGFNWESCKHDWWRNLERKVPDISKSGFTSVWLPPATHSF----APEGYLPQNLYSLNSSYGSEHLLKALL 96 (314)
Q Consensus 21 ~~~~~~~i~q~F~w~~~~~g~~~gi~~~ldyl~~lG~~~I~l~Pi~~~~----~~~gY~~~d~~~id~~~Gt~~df~~lv 96 (314)
..+|+.|++.... +-+....+..++..|++.++..|-.+.. ..+.-..+=.-.+..-.|..-++++++
T Consensus 89 l~~GD~Vlv~~~~--------y~~~~~~~~~~~~~g~~v~~~~~d~~~l~~~i~~~~tklV~ie~p~NPtG~v~dl~~I~ 160 (385)
T PRK08574 89 LKAGDRVVLPMEA--------YGTTLRLLKSLEKFGVKVVLAYPSTEDIIEAIKEGRTKLVFIETMTNPTLKVIDVPEVA 160 (385)
T ss_pred hCCCCEEEEcCCC--------chhHHHHHHHhhccCcEEEEECCCHHHHHHhcCccCceEEEEECCCCCCCEecCHHHHH
Confidence 4567777766543 3333344444466777776654321110 010111110111223345566789999
Q ss_pred HHHhhCCCEEEEeeee
Q 021281 97 HKMKQHKVRAMADIVI 112 (314)
Q Consensus 97 ~~ah~~Gi~VilD~V~ 112 (314)
+.||++|+.||+|-..
T Consensus 161 ~la~~~gi~livD~t~ 176 (385)
T PRK08574 161 KAAKELGAILVVDNTF 176 (385)
T ss_pred HHHHHcCCEEEEECCC
Confidence 9999999999999874
No 254
>PRK02227 hypothetical protein; Provisional
Probab=49.77 E-value=29 Score=31.31 Aligned_cols=52 Identities=13% Similarity=0.142 Sum_probs=37.6
Q ss_pred HHhhhHHHHcCCCEEEeCCCCCCCCCCCCCcccCCCcCCCCCCHHHHHHHHHHHhhCCCEEEE
Q 021281 46 ERKVPDISKSGFTSVWLPPATHSFAPEGYLPQNLYSLNSSYGSEHLLKALLHKMKQHKVRAMA 108 (314)
Q Consensus 46 ~~~ldyl~~lG~~~I~l~Pi~~~~~~~gY~~~d~~~id~~~Gt~~df~~lv~~ah~~Gi~Vil 108 (314)
.+.++.+++.||..+-|= ...-.|-...||. +.++|+++|+.||++|+..=|
T Consensus 134 ~~l~~~a~~aGf~g~MlD----Ta~Kdg~~Lfd~l-------~~~~L~~Fv~~ar~~Gl~~gL 185 (238)
T PRK02227 134 LSLPAIAADAGFDGAMLD----TAIKDGKSLFDHM-------DEEELAEFVAEARSHGLMSAL 185 (238)
T ss_pred HHHHHHHHHcCCCEEEEe----cccCCCcchHhhC-------CHHHHHHHHHHHHHcccHhHh
Confidence 355677888999998872 2223344444443 578999999999999998766
No 255
>smart00052 EAL Putative diguanylate phosphodiesterase. Putative diguanylate phosphodiesterase, present in a variety of bacteria.
Probab=49.31 E-value=18 Score=31.40 Aligned_cols=86 Identities=12% Similarity=0.137 Sum_probs=53.8
Q ss_pred ceeEEEEeeCCCCCCchHHHHHHhhhHHHHcCCCEEEeCCCCCCCC---CCCCCcccCCCcCCCCC--------CHHHHH
Q 021281 25 REILFQGFNWESCKHDWWRNLERKVPDISKSGFTSVWLPPATHSFA---PEGYLPQNLYSLNSSYG--------SEHLLK 93 (314)
Q Consensus 25 ~~~i~q~F~w~~~~~g~~~gi~~~ldyl~~lG~~~I~l~Pi~~~~~---~~gY~~~d~~~id~~~G--------t~~df~ 93 (314)
+.+++++=+-... .+...+.+.+..|+++||. |.|-=+-.... .-..-+.|+-++|+.+- ...-++
T Consensus 117 ~~lvlei~e~~~~--~~~~~~~~~i~~l~~~G~~-ialddfg~~~~~~~~l~~l~~d~iKld~~~~~~~~~~~~~~~~l~ 193 (241)
T smart00052 117 QRLELEITESVLL--DDDESAVATLQRLRELGVR-IALDDFGTGYSSLSYLKRLPVDLLKIDKSFVRDLQTDPEDEAIVQ 193 (241)
T ss_pred HHEEEEEeChhhh--cChHHHHHHHHHHHHCCCE-EEEeCCCCcHHHHHHHHhCCCCeEEECHHHHhhhccChhHHHHHH
Confidence 3577777762211 1355666889999999996 45432211110 11122356667775543 234689
Q ss_pred HHHHHHhhCCCEEEEeeeec
Q 021281 94 ALLHKMKQHKVRAMADIVIN 113 (314)
Q Consensus 94 ~lv~~ah~~Gi~VilD~V~N 113 (314)
.+++.||..|++||++-|=+
T Consensus 194 ~l~~~~~~~~~~via~gVe~ 213 (241)
T smart00052 194 SIIELAQKLGLQVVAEGVET 213 (241)
T ss_pred HHHHHHHHCCCeEEEecCCC
Confidence 99999999999999977644
No 256
>PLN02849 beta-glucosidase
Probab=49.20 E-value=91 Score=31.39 Aligned_cols=63 Identities=13% Similarity=0.262 Sum_probs=43.0
Q ss_pred hHHHHHHhhhHHHHcCCCEEEeCCCCCCCCCCCCCcccCCCcCCCCCCHHHHHHHHHHHhhCCCEEEEee
Q 021281 41 WWRNLERKVPDISKSGFTSVWLPPATHSFAPEGYLPQNLYSLNSSYGSEHLLKALLHKMKQHKVRAMADI 110 (314)
Q Consensus 41 ~~~gi~~~ldyl~~lG~~~I~l~Pi~~~~~~~gY~~~d~~~id~~~Gt~~df~~lv~~ah~~Gi~VilD~ 110 (314)
.+....+-++-+++||+++-=++=-....-+.|-. .+| --..+=.++||++|+++||+.|+-+
T Consensus 77 ~YhrY~eDI~Lm~~lG~~aYRfSIsWsRI~P~G~g-----~vN--~~gl~fY~~lid~l~~~GI~P~VTL 139 (503)
T PLN02849 77 GYHKYKEDVKLMVETGLDAFRFSISWSRLIPNGRG-----SVN--PKGLQFYKNFIQELVKHGIEPHVTL 139 (503)
T ss_pred HHHhHHHHHHHHHHcCCCeEEEeccHHhcCcCCCC-----CCC--HHHHHHHHHHHHHHHHcCCeEEEee
Confidence 78999999999999999998664322111112211 122 1123457899999999999999844
No 257
>cd05005 SIS_PHI Hexulose-6-phosphate isomerase (PHI). PHI is a member of the SIS (Sugar ISomerase domain) superfamily. In the ribulose monophosphate pathway of formaldehyde fixation, hexulose-6-phosphate synthase catalyzes the condensation of ribulose-5-phosphate with formadelhyde to become hexulose-6-phosphate, which is then isomerized to fructose-6-phosphate by PHI.
Probab=49.18 E-value=93 Score=26.15 Aligned_cols=76 Identities=14% Similarity=0.136 Sum_probs=47.7
Q ss_pred cCCceeEEEEeeCCCCCCchHHHHHHhh-hHHHHcCCCEEEeCCCCCCCCCCCCCcccCCCcCCCCCCHHHHHHHHHHHh
Q 021281 22 RNGREILFQGFNWESCKHDWWRNLERKV-PDISKSGFTSVWLPPATHSFAPEGYLPQNLYSLNSSYGSEHLLKALLHKMK 100 (314)
Q Consensus 22 ~~~~~~i~q~F~w~~~~~g~~~gi~~~l-dyl~~lG~~~I~l~Pi~~~~~~~gY~~~d~~~id~~~Gt~~df~~lv~~ah 100 (314)
.+.+.|.+-+.... ..+.+.+ ..|..+|...+.+..... ..-...|..-+=+.-|.-.+..++++.|+
T Consensus 31 ~~a~~I~i~G~G~S-------~~~A~~~~~~l~~~g~~~~~~~~~~~----~~~~~~D~vI~iS~sG~t~~~i~~~~~ak 99 (179)
T cd05005 31 LNAKRIFVYGAGRS-------GLVAKAFAMRLMHLGLNVYVVGETTT----PAIGPGDLLIAISGSGETSSVVNAAEKAK 99 (179)
T ss_pred HhCCeEEEEecChh-------HHHHHHHHHHHHhCCCeEEEeCCCCC----CCCCCCCEEEEEcCCCCcHHHHHHHHHHH
Confidence 33345766666544 3333333 457788998888754321 11222332233356677788999999999
Q ss_pred hCCCEEEE
Q 021281 101 QHKVRAMA 108 (314)
Q Consensus 101 ~~Gi~Vil 108 (314)
++|++||.
T Consensus 100 ~~g~~iI~ 107 (179)
T cd05005 100 KAGAKVVL 107 (179)
T ss_pred HCCCeEEE
Confidence 99999987
No 258
>PRK05093 argD bifunctional N-succinyldiaminopimelate-aminotransferase/acetylornithine transaminase protein; Reviewed
Probab=49.17 E-value=51 Score=31.65 Aligned_cols=61 Identities=16% Similarity=0.093 Sum_probs=42.7
Q ss_pred hHHHHHHhhhHHHHcCCCEEEeCCCCCCCCCCCCCcccCCCcCCCCCCHHHHHHHHHHHhhCCCEEEEeeeeccccCC
Q 021281 41 WWRNLERKVPDISKSGFTSVWLPPATHSFAPEGYLPQNLYSLNSSYGSEHLLKALLHKMKQHKVRAMADIVINHRVGT 118 (314)
Q Consensus 41 ~~~gi~~~ldyl~~lG~~~I~l~Pi~~~~~~~gY~~~d~~~id~~~Gt~~df~~lv~~ah~~Gi~VilD~V~NH~~~~ 118 (314)
|++.+++.+. -.+.+|.+.|++... |.- ..+.+.++++++-|+++|+-+|+|=|..+.+..
T Consensus 173 d~~~l~~~l~----~~~aaiiiep~~~~g---g~~----------~~~~~~l~~l~~l~~~~g~~lI~DEv~~g~g~~ 233 (403)
T PRK05093 173 DLAAVKAVID----DHTCAVVVEPIQGEG---GVI----------PATPEFLQGLRELCDQHNALLIFDEVQTGMGRT 233 (403)
T ss_pred CHHHHHHHhc----CCeEEEEEecccCCC---CCc----------cCCHHHHHHHHHHHHHcCCEEEEechhhCCCCC
Confidence 4666665553 136678888876432 211 124688999999999999999999997766543
No 259
>TIGR03551 F420_cofH 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, CofH subunit. This enzyme, together with CofG, complete the biosynthesis of 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, the chromophore of coenzyme F420. The chromophore is also used in cyanobacteria DNA photolyases.
Probab=49.17 E-value=23 Score=33.48 Aligned_cols=34 Identities=12% Similarity=0.097 Sum_probs=26.7
Q ss_pred cCCCCCCHHHHHHHHHHHhhCCCEEEEeeeeccc
Q 021281 82 LNSSYGSEHLLKALLHKMKQHKVRAMADIVINHR 115 (314)
Q Consensus 82 id~~~Gt~~df~~lv~~ah~~Gi~VilD~V~NH~ 115 (314)
|.|.=-+.++..+.++.||+.||+|-.=+.+.|-
T Consensus 171 i~~~~~~~~~~~~~i~~a~~~Gi~v~s~~i~G~~ 204 (343)
T TIGR03551 171 ICPDKLSTAEWIEIIKTAHKLGIPTTATIMYGHV 204 (343)
T ss_pred cCCCCCCHHHHHHHHHHHHHcCCcccceEEEecC
Confidence 4443236778899999999999999888888765
No 260
>PRK06702 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=49.08 E-value=40 Score=33.19 Aligned_cols=79 Identities=15% Similarity=0.168 Sum_probs=51.5
Q ss_pred ccCCceeEEEEeeCCCCCCchHHHHHHhhhH-HHHcCCCEEEeCCCCCCC------CCCCCCcccCCCcCCCCCCHH---
Q 021281 21 IRNGREILFQGFNWESCKHDWWRNLERKVPD-ISKSGFTSVWLPPATHSF------APEGYLPQNLYSLNSSYGSEH--- 90 (314)
Q Consensus 21 ~~~~~~~i~q~F~w~~~~~g~~~gi~~~ldy-l~~lG~~~I~l~Pi~~~~------~~~gY~~~d~~~id~~~Gt~~--- 90 (314)
.++|+.||...+. |-+..+.+.. ++.+|++..++.+-.... .... ..+ + + ...|++.
T Consensus 97 l~~GD~VI~~~~~--------Y~~T~~~~~~~l~~~Gi~v~~vd~~~d~~~l~~~I~~~T-k~I--~-~-e~pgnP~~~v 163 (432)
T PRK06702 97 CSSGDHLLCSSTV--------YGGTFNLFGVSLRKLGIDVTFFNPNLTADEIVALANDKT-KLV--Y-A-ESLGNPAMNV 163 (432)
T ss_pred cCCCCEEEECCCc--------hHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHhCCcCC-eEE--E-E-EcCCCccccc
Confidence 4678888887776 4444444444 688999988886511100 1110 011 1 2 2246655
Q ss_pred -HHHHHHHHHhhCCCEEEEeeee
Q 021281 91 -LLKALLHKMKQHKVRAMADIVI 112 (314)
Q Consensus 91 -df~~lv~~ah~~Gi~VilD~V~ 112 (314)
|++++++.||++|+.||.|-++
T Consensus 164 ~Di~~I~~iA~~~gi~livD~T~ 186 (432)
T PRK06702 164 LNFKEFSDAAKELEVPFIVDNTL 186 (432)
T ss_pred cCHHHHHHHHHHcCCEEEEECCC
Confidence 8999999999999999999986
No 261
>cd00954 NAL N-Acetylneuraminic acid aldolase, also called N-acetylneuraminate lyase (NAL), which catalyses the reversible aldol reaction of N-acetyl-D-mannosamine and pyruvate to give N-acetyl-D-neuraminic acid (D-sialic acid). It has a widespread application as biocatalyst for the synthesis of sialic acid and its derivatives. This enzyme has been shown to be quite specific for pyruvate as the donor, but flexible to a variety of D- and, to some extent, L-hexoses and pentoses as acceptor substrates. NAL is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases.
Probab=49.01 E-value=47 Score=30.56 Aligned_cols=81 Identities=10% Similarity=0.100 Sum_probs=48.3
Q ss_pred ccchhhcccccccCccccCCc-eeEEEEeeCCCCCCchHHHHHHhhhHHHHcCCCEEEeCCCCCCCCCCCCCcccCCCcC
Q 021281 5 SKGFDETNQQTDLGAVIRNGR-EILFQGFNWESCKHDWWRNLERKVPDISKSGFTSVWLPPATHSFAPEGYLPQNLYSLN 83 (314)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~-~~i~q~F~w~~~~~g~~~gi~~~ldyl~~lG~~~I~l~Pi~~~~~~~gY~~~d~~~id 83 (314)
++|.+|-..-....-....|+ .||.++-.= +.+...+...+.+++|+++|.++|++ | +..
T Consensus 50 ~Lt~~Er~~~~~~~~~~~~~~~~viagv~~~------~~~~ai~~a~~a~~~Gad~v~~~~P~-------y-----~~~- 110 (288)
T cd00954 50 LLSVEERKQIAEIVAEAAKGKVTLIAHVGSL------NLKESQELAKHAEELGYDAISAITPF-------Y-----YKF- 110 (288)
T ss_pred cCCHHHHHHHHHHHHHHhCCCCeEEeccCCC------CHHHHHHHHHHHHHcCCCEEEEeCCC-------C-----CCC-
Confidence 444444333333333333343 345554332 48889999999999999999998865 1 221
Q ss_pred CCCCCHHH-HHHHHHHHhhC-CCEEEE
Q 021281 84 SSYGSEHL-LKALLHKMKQH-KVRAMA 108 (314)
Q Consensus 84 ~~~Gt~~d-f~~lv~~ah~~-Gi~Vil 108 (314)
+.++ ++.+-+-|.+- ++.||+
T Consensus 111 ----~~~~i~~~~~~v~~a~~~lpi~i 133 (288)
T cd00954 111 ----SFEEIKDYYREIIAAAASLPMII 133 (288)
T ss_pred ----CHHHHHHHHHHHHHhcCCCCEEE
Confidence 2344 34444445666 788888
No 262
>PRK13561 putative diguanylate cyclase; Provisional
Probab=48.63 E-value=30 Score=35.56 Aligned_cols=85 Identities=8% Similarity=0.122 Sum_probs=54.0
Q ss_pred eeEEEEeeCCCCCCchHHHHHHhhhHHHHcCCCEEEeCCCCCCCCCCC------CCcccCCCcCCCC-----CCHHHHHH
Q 021281 26 EILFQGFNWESCKHDWWRNLERKVPDISKSGFTSVWLPPATHSFAPEG------YLPQNLYSLNSSY-----GSEHLLKA 94 (314)
Q Consensus 26 ~~i~q~F~w~~~~~g~~~gi~~~ldyl~~lG~~~I~l~Pi~~~~~~~g------Y~~~d~~~id~~~-----Gt~~df~~ 94 (314)
.+++++=+-.... +.+.+.+.+..|+++||.-.. -=+-...++-. .-+.|+-+||..| .+..-++.
T Consensus 519 ~l~lEi~E~~~~~--~~~~~~~~~~~l~~~G~~i~l-ddfG~g~ssl~~L~~l~~l~~d~lKiD~s~i~~i~~~~~~v~~ 595 (651)
T PRK13561 519 TLILEVTESRRID--DPHAAVAILRPLRNAGVRVAL-DDFGMGYAGLRQLQHMKSLPIDVLKIDKMFVDGLPEDDSMVAA 595 (651)
T ss_pred HEEEEEchhhhhc--CHHHHHHHHHHHHHCCCEEEE-ECCCCCcccHHHHhhcCCCCCcEEEECHHHHhcCCCCHHHHHH
Confidence 4666665532221 478899999999999996543 11000001111 1356777777443 34566899
Q ss_pred HHHHHhhCCCEEEEeeeec
Q 021281 95 LLHKMKQHKVRAMADIVIN 113 (314)
Q Consensus 95 lv~~ah~~Gi~VilD~V~N 113 (314)
+++-||..||+||...|=+
T Consensus 596 i~~~a~~l~i~viAegVE~ 614 (651)
T PRK13561 596 IIMLAQSLNLQVIAEGVET 614 (651)
T ss_pred HHHHHHHCCCcEEEecCCC
Confidence 9999999999999976644
No 263
>smart00729 Elp3 Elongator protein 3, MiaB family, Radical SAM. This superfamily contains MoaA, NifB, PqqE, coproporphyrinogen III oxidase, biotin synthase and MiaB families, and includes a representative in the eukaryotic elongator subunit, Elp-3. Some members of the family are methyltransferases.
Probab=48.09 E-value=49 Score=27.63 Aligned_cols=29 Identities=7% Similarity=0.234 Sum_probs=25.0
Q ss_pred CCHHHHHHHHHHHhhCC-CEEEEeeeeccc
Q 021281 87 GSEHLLKALLHKMKQHK-VRAMADIVINHR 115 (314)
Q Consensus 87 Gt~~df~~lv~~ah~~G-i~VilD~V~NH~ 115 (314)
++.+.+.+.++.+++.| +.|.+.++++..
T Consensus 133 ~~~~~~~~~i~~~~~~g~~~v~~~~~~g~~ 162 (216)
T smart00729 133 HTVEDVLEAVEKLREAGPIKVSTDLIVGLP 162 (216)
T ss_pred CCHHHHHHHHHHHHHhCCcceEEeEEecCC
Confidence 45688999999999999 899998888765
No 264
>TIGR03402 FeS_nifS cysteine desulfurase NifS. Members of this protein family are NifS, one of several related families of cysteine desulfurase involved in iron-sulfur (FeS) cluster biosynthesis. NifS is part of the NIF system, usually associated with other nif genes involved in nitrogenase expression and nitrogen fixation. The protein family is given a fairly broad interpretation here. It includes a clade nearly always found in extended nitrogen fixation genomic regions, plus a second clade more closely related to the first than to IscS and also part of NifS-like/NifU-like systems. This model does not extend to a more distantly clade found in the epsilon proteobacteria such as Helicobacter pylori, also named NifS in the literature, built instead in TIGR03403.
Probab=47.95 E-value=55 Score=30.89 Aligned_cols=69 Identities=13% Similarity=0.128 Sum_probs=42.7
Q ss_pred HHHHHhhhHHHHcCCCEEEeCCCCCCC----------CCCCCCcccCCCcCCCCCCHHHHHHHHHHHhhCCCEEEEeeee
Q 021281 43 RNLERKVPDISKSGFTSVWLPPATHSF----------APEGYLPQNLYSLNSSYGSEHLLKALLHKMKQHKVRAMADIVI 112 (314)
Q Consensus 43 ~gi~~~ldyl~~lG~~~I~l~Pi~~~~----------~~~gY~~~d~~~id~~~Gt~~df~~lv~~ah~~Gi~VilD~V~ 112 (314)
.....-...++..|++.+++.. -... -.......-...++...|...+++++.+.||++|+.|++|-+-
T Consensus 97 ~s~~~~~~~~~~~G~~v~~v~~-~~~g~~~~~~l~~~i~~~~~lv~i~~~~n~tG~~~~~~~I~~l~~~~g~~vivD~~~ 175 (379)
T TIGR03402 97 PAVLSLCQHLEKQGYKVTYLPV-DEEGRLDLEELRAAITDDTALVSVMWANNETGTIFPIEEIGEIAKERGALFHTDAVQ 175 (379)
T ss_pred HHHHHHHHHHHHcCCEEEEEcc-CCCCcCCHHHHHHhcCCCcEEEEEEcccCCeeecccHHHHHHHHHHcCCEEEEECcc
Confidence 3444444556678998887742 1111 0111111112223455688888999999999999999999864
No 265
>TIGR03127 RuMP_HxlB 6-phospho 3-hexuloisomerase. Members of this protein family are 6-phospho 3-hexuloisomerase (PHI), or the PHI domain of a fusion protein. This enzyme is part of the ribulose monophosphate (RuMP) pathway, which in one direction removes the toxic metabolite formaldehyde by assimilation into fructose-6-phosphate. In the other direction, in species lacking a complete pentose phosphate pathway, the RuMP pathway yields ribulose-5-phosphate, necessary for nucleotide biosynthesis, at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin.
Probab=47.79 E-value=85 Score=26.34 Aligned_cols=56 Identities=18% Similarity=0.131 Sum_probs=39.0
Q ss_pred hhHHHHcCCCEEEeCCCCCCCCCCCCCcccCCCcCCCCCCHHHHHHHHHHHhhCCCEEEE
Q 021281 49 VPDISKSGFTSVWLPPATHSFAPEGYLPQNLYSLNSSYGSEHLLKALLHKMKQHKVRAMA 108 (314)
Q Consensus 49 ldyl~~lG~~~I~l~Pi~~~~~~~gY~~~d~~~id~~~Gt~~df~~lv~~ah~~Gi~Vil 108 (314)
...+..+|.++..+...... .-...|..-+=+.-|.-+++.++++.||++|++||.
T Consensus 49 ~~~l~~~g~~~~~~~~~~~~----~~~~~Dv~I~iS~sG~t~~~i~~~~~ak~~g~~ii~ 104 (179)
T TIGR03127 49 AMRLMHLGFNVYVVGETTTP----SIKKGDLLIAISGSGETESLVTVAKKAKEIGATVAA 104 (179)
T ss_pred HHHHHhCCCeEEEeCCcccC----CCCCCCEEEEEeCCCCcHHHHHHHHHHHHCCCeEEE
Confidence 34578899999887654311 122233333335667888999999999999999987
No 266
>PF01261 AP_endonuc_2: Xylose isomerase-like TIM barrel; InterPro: IPR012307 This TIM alpha/beta barrel structure is found in xylose isomerase (P19148 from SWISSPROT) and in endonuclease IV (P12638 from SWISSPROT, 3.1.21.2 from EC). This domain is also found in the N termini of bacterial myo-inositol catabolism proteins. These are involved in the myo-inositol catabolism pathway, and is required for growth on myo-inositol in Rhizobium leguminosarum bv. viciae []. ; PDB: 3KWS_B 3DX5_A 3CQH_B 3CQI_A 3CQK_A 3CQJ_B 2G0W_B 1DXI_A 2ZDS_D 3TVA_B ....
Probab=47.60 E-value=8.5 Score=32.65 Aligned_cols=45 Identities=11% Similarity=0.089 Sum_probs=34.0
Q ss_pred hhHHHHcCCCEEEeCCCCCCCCCCCCCcccCCCcCCCCCCHHHHHHHHHHHhhCCCEEEE
Q 021281 49 VPDISKSGFTSVWLPPATHSFAPEGYLPQNLYSLNSSYGSEHLLKALLHKMKQHKVRAMA 108 (314)
Q Consensus 49 ldyl~~lG~~~I~l~Pi~~~~~~~gY~~~d~~~id~~~Gt~~df~~lv~~ah~~Gi~Vil 108 (314)
|..++++||++|.+.+..... ... . .++++++.+.+.+.||+|..
T Consensus 1 l~~~~~~G~~~vE~~~~~~~~------~~~---~------~~~~~~~~~~~~~~gl~i~~ 45 (213)
T PF01261_consen 1 LEAAAEAGFDGVELRFDDGQP------WDE---K------DDEAEELRRLLEDYGLKIAS 45 (213)
T ss_dssp HHHHHHTTHSEEEEEHHHHSH------HTH---H------HHHHHHHHHHHHHTTCEEEE
T ss_pred ChHHHHcCCCEEEEecCCCcc------ccc---c------hHHHHHHHHHHHHcCCeEEE
Confidence 467899999999998754221 110 0 78899999999999999665
No 267
>COG3345 GalA Alpha-galactosidase [Carbohydrate transport and metabolism]
Probab=47.43 E-value=63 Score=32.87 Aligned_cols=165 Identities=9% Similarity=0.006 Sum_probs=88.9
Q ss_pred ccccccCccccCCceeEEEEeeCCCCCCchHHHHHHhhhHHHHcCCCEEEeCCCCCC-CCCCCCCcccCCCcCCCCCCHH
Q 021281 12 NQQTDLGAVIRNGREILFQGFNWESCKHDWWRNLERKVPDISKSGFTSVWLPPATHS-FAPEGYLPQNLYSLNSSYGSEH 90 (314)
Q Consensus 12 ~~~~~~~~~~~~~~~~i~q~F~w~~~~~g~~~gi~~~ldyl~~lG~~~I~l~Pi~~~-~~~~gY~~~d~~~id~~~Gt~~ 90 (314)
+|++-..|..+.-+-+.+.-++-.+.+- +.+.|.+-++..|+.||....|===+.. ....-=+.-|++.-..+|+ .
T Consensus 279 ~~~i~~~~~~~kprPi~~nsWea~Yfd~-t~e~ile~vk~akk~gvE~FvlDDGwfg~rndd~~slGDWlv~seKfP--s 355 (687)
T COG3345 279 RMEIVPRPRVKKPRPIGWNSWEAYYFDF-TEEEILENVKEAKKFGVELFVLDDGWFGGRNDDLKSLGDWLVNSEKFP--S 355 (687)
T ss_pred HhhcCcccccCCCCcceeeceeeeeecC-CHHHHHHHHHHHhhcCeEEEEEccccccccCcchhhhhceecchhhcc--c
Confidence 4444443444443445555555444433 6899999999999999887765321111 1111112334444445554 3
Q ss_pred HHHHHHHHHhhCCCEEEEeeeeccccCCCCCCCCcCcCCCCCCCCCCCCCcccCCCCCccccCCCCCCCCCCCCCCCHHH
Q 021281 91 LLKALLHKMKQHKVRAMADIVINHRVGTTQGHGGKYNRYDGIPLSWDEHAVTSCTGGLGNGSTGDNFHGVPNIDHTQHFV 170 (314)
Q Consensus 91 df~~lv~~ah~~Gi~VilD~V~NH~~~~~~~~~~~y~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~~p~v 170 (314)
.+..||++.|++|++-=+-+-+--++.++.- |.. .++|- .+ -+|+..- .....--|+..+|.|
T Consensus 356 giE~li~~I~e~Gl~fGIWlePemvs~dSdl-------frq-HPDWv----vk-~~G~p~~----~~Rnqyvl~~s~p~v 418 (687)
T COG3345 356 GIEELIEAIAENGLIFGIWLEPEMVSEDSDL-------FRQ-HPDWV----VK-VNGYPLM----AGRNQYVLWLSNPIV 418 (687)
T ss_pred cHHHHHHHHHHcCCccceeecchhcccchHH-------Hhh-CCCeE----Ee-cCCcccc----ccccchhhhccChHH
Confidence 4778999999999998887777665555431 111 12221 11 1111100 001122367777777
Q ss_pred HHHHHHHH---------HHHHHhCCCCEEEeccCC
Q 021281 171 RKDIIAWL---------RWLRNTVGFQDFRFDFAR 196 (314)
Q Consensus 171 ~~~l~~~~---------~~w~~~~gvDGfRlDaa~ 196 (314)
..++.+-+ .++.-+.|..-|.+|+-.
T Consensus 419 v~~l~~~l~qll~~~~v~ylkwdmnr~l~klg~~~ 453 (687)
T COG3345 419 VLDLSEDLVQLLLFHLVSYLKWDMNRELFKLGFLF 453 (687)
T ss_pred HHHhhhHHHHHHHhhhHHHHHHHhCcceeecCCCC
Confidence 77776543 333226777777777753
No 268
>PRK15108 biotin synthase; Provisional
Probab=47.42 E-value=65 Score=30.64 Aligned_cols=28 Identities=7% Similarity=0.093 Sum_probs=25.1
Q ss_pred CCHHHHHHHHHHHhhCCCEEEEeeeecc
Q 021281 87 GSEHLLKALLHKMKQHKVRAMADIVINH 114 (314)
Q Consensus 87 Gt~~df~~lv~~ah~~Gi~VilD~V~NH 114 (314)
++.++..+.++.||+.|++|-.=+.+.|
T Consensus 168 ~~~~~rl~~i~~a~~~G~~v~sg~i~Gl 195 (345)
T PRK15108 168 RTYQERLDTLEKVRDAGIKVCSGGIVGL 195 (345)
T ss_pred CCHHHHHHHHHHHHHcCCceeeEEEEeC
Confidence 4788999999999999999988888887
No 269
>TIGR03470 HpnH hopanoid biosynthesis associated radical SAM protein HpnH. The sequences represented by this model are members of the radical SAM superfamily of enzymes (pfam04055). These enzymes utilize an iron-sulfur redox cluster and S-adenosylmethionine to carry out diverse radical mediated reactions. The members of this clade are frequently found in the same locus as squalene-hopene cyclase (SHC, TIGR01507) and other genes associated with the biosynthesis of hopanoid natural products. The linkage between SHC and this radical SAM enzyme is strong; one is nearly always observed in the same genome where the other is found. A hopanoid biosynthesis locus was described in Zymomonas mobilis consisting of the genes HpnA-E and SHC (HpnF). Continuing past SHC are found a phosphorylase enzyme (ZMO0873, i.e. HpnG, TIGR03468) and this radical SAM enzyme (ZMO0874) which we name here HpnH. Granted, in Z. mobilis, HpnH is in a convergent orientation with respect to HpnA-G, but one gene beyond HpnH
Probab=46.97 E-value=56 Score=30.62 Aligned_cols=28 Identities=7% Similarity=0.017 Sum_probs=25.1
Q ss_pred hHHHHHHhhhHHHHcCCCEEEeCCCCCC
Q 021281 41 WWRNLERKVPDISKSGFTSVWLPPATHS 68 (314)
Q Consensus 41 ~~~gi~~~ldyl~~lG~~~I~l~Pi~~~ 68 (314)
+.+.+.+.+++++++|++.|.+.|.+..
T Consensus 176 n~~ei~~~~~~~~~lGv~~i~i~p~~~~ 203 (318)
T TIGR03470 176 DPEEVAEFFDYLTDLGVDGMTISPGYAY 203 (318)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEecCccc
Confidence 6899999999999999999999997743
No 270
>cd01299 Met_dep_hydrolase_A Metallo-dependent hydrolases, subgroup A is part of the superfamily of metallo-dependent hydrolases, a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site. The vast majority of the members have a conserved metal binding site, involving four histidines and one aspartic acid residue. In the common reaction mechanism, the metal ion (or ions) deprotonate a water molecule for a nucleophilic attack on the substrate. The function of this subgroup is unknown.
Probab=46.92 E-value=94 Score=28.82 Aligned_cols=63 Identities=13% Similarity=0.126 Sum_probs=41.5
Q ss_pred hHHHHHHhhhHHHHcCCCEEEeCCCCCCCCCCCCCcccCCCcCCCCCCHHHHHHHHHHHhhCCCEEEEee
Q 021281 41 WWRNLERKVPDISKSGFTSVWLPPATHSFAPEGYLPQNLYSLNSSYGSEHLLKALLHKMKQHKVRAMADI 110 (314)
Q Consensus 41 ~~~gi~~~ldyl~~lG~~~I~l~Pi~~~~~~~gY~~~d~~~id~~~Gt~~df~~lv~~ah~~Gi~VilD~ 110 (314)
+-+.+.+.+..+.+.|++.|=+.--........ ......=+.+.|++++++||++|+.|.+-.
T Consensus 118 ~~~~~~~~v~~~~~~G~~~iK~~~~g~~~~~~~-------~~~~~~~~~e~l~~~~~~A~~~g~~v~~H~ 180 (342)
T cd01299 118 GVEEVRAAVREQLRRGADQIKIMATGGVLSPGD-------PPPDTQFSEEELRAIVDEAHKAGLYVAAHA 180 (342)
T ss_pred CHHHHHHHHHHHHHhCCCEEEEeccCCcCCCCC-------CCcccCcCHHHHHHHHHHHHHcCCEEEEEe
Confidence 467788889989999999996542110000000 011112257899999999999999988743
No 271
>PF15640 Tox-MPTase4: Metallopeptidase toxin 4
Probab=46.92 E-value=20 Score=28.84 Aligned_cols=27 Identities=15% Similarity=0.164 Sum_probs=24.1
Q ss_pred CCCCCCHHHHHHHHHHHhhCCCEEEEe
Q 021281 83 NSSYGSEHLLKALLHKMKQHKVRAMAD 109 (314)
Q Consensus 83 d~~~Gt~~df~~lv~~ah~~Gi~VilD 109 (314)
..++-+..|++.+-+...++||+|++|
T Consensus 15 G~ri~s~~d~k~~kk~m~~~gIkV~Id 41 (132)
T PF15640_consen 15 GQRIMSVKDIKNFKKEMGKRGIKVKID 41 (132)
T ss_pred CcEeeeHHHHHHHHHHHHhCCcEEEEC
Confidence 456778899999999999999999997
No 272
>PRK13361 molybdenum cofactor biosynthesis protein A; Provisional
Probab=46.66 E-value=55 Score=30.72 Aligned_cols=60 Identities=17% Similarity=0.207 Sum_probs=39.3
Q ss_pred HHhhhHHHHcCCCEEEeCCCCCCCCCCCCCcccCCCcCCCCCCHHHHHHHHHHHhhCCC-EEEEeeeec
Q 021281 46 ERKVPDISKSGFTSVWLPPATHSFAPEGYLPQNLYSLNSSYGSEHLLKALLHKMKQHKV-RAMADIVIN 113 (314)
Q Consensus 46 ~~~ldyl~~lG~~~I~l~Pi~~~~~~~gY~~~d~~~id~~~Gt~~df~~lv~~ah~~Gi-~VilD~V~N 113 (314)
.+.++.|++.|++.|.++= ++..+.-|-++. +-|+.+...+.+++|.+.|+ .|-+..|+.
T Consensus 104 ~~~~~~L~~aGl~~v~ISl-------Ds~~~e~~~~i~-~~g~~~~vl~~i~~~~~~Gi~~v~in~v~~ 164 (329)
T PRK13361 104 ARFAAELADAGLKRLNISL-------DTLRPELFAALT-RNGRLERVIAGIDAAKAAGFERIKLNAVIL 164 (329)
T ss_pred HHHHHHHHHcCCCeEEEEe-------ccCCHHHhhhhc-CCCCHHHHHHHHHHHHHcCCCceEEEEEEE
Confidence 3456667777777766531 223333233443 34788889999999999999 788877753
No 273
>cd02930 DCR_FMN 2,4-dienoyl-CoA reductase (DCR) FMN-binding domain. DCR in E. coli is an iron-sulfur flavoenzyme which contains FMN, FAD, and a 4Fe-4S cluster. It is also a monomer, unlike that of its eukaryotic counterparts which form homotetramers and lack the flavin and iron-sulfur cofactors. Metabolism of unsaturated fatty acids requires auxiliary enzymes in addition to those used in b-oxidation. After a given number of cycles through the b-oxidation pathway, those unsaturated fatty acyl-CoAs with double bonds at even-numbered carbon positions contain 2-trans, 4-cis double bonds that can not be modified by enoyl-CoA hydratase. DCR utilizes NADPH to remove the C4-C5 double bond. DCR can catalyze the reduction of both natural fatty acids with cis double bonds, as well as substrates containing trans double bonds. The reaction is initiated by hybrid transfer from NADPH to FAD, which in turn transfers electrons, one at a time, to FMN via the 4Fe-4S cluster. The fully reduced FMN provi
Probab=46.63 E-value=2.6e+02 Score=26.46 Aligned_cols=71 Identities=13% Similarity=-0.004 Sum_probs=41.9
Q ss_pred HHHHHhhhHHHHcCCCEEEeCCCCCCCCCCCCCcccCCCcCCCCCCHHHHHHHHHHHhhCCCEEEEeeeeccccCC
Q 021281 43 RNLERKVPDISKSGFTSVWLPPATHSFAPEGYLPQNLYSLNSSYGSEHLLKALLHKMKQHKVRAMADIVINHRVGT 118 (314)
Q Consensus 43 ~gi~~~ldyl~~lG~~~I~l~Pi~~~~~~~gY~~~d~~~id~~~Gt~~df~~lv~~ah~~Gi~VilD~V~NH~~~~ 118 (314)
+.+.+.....++-|+.-|..-..+-.....++ +.. ..+... .-.+.+|+|++++|+.|-++++-+ +|.|..
T Consensus 33 ~~~~~~y~~rA~gG~glii~~~~~v~~~~~~~-~~~-~~~~~~-~~i~~~~~l~~~vh~~g~~~~~QL--~h~G~~ 103 (353)
T cd02930 33 DRLAAFYAERARGGVGLIVTGGFAPNEAGKLG-PGG-PVLNSP-RQAAGHRLITDAVHAEGGKIALQI--LHAGRY 103 (353)
T ss_pred HHHHHHHHHHhcCCceEEEEeeEEeCCcccCC-CCC-cccCCH-HHHHHHHHHHHHHHHcCCEEEeec--cCCCCC
Confidence 34444445555667888776554433322222 110 111110 135789999999999999999876 587764
No 274
>PLN02855 Bifunctional selenocysteine lyase/cysteine desulfurase
Probab=46.51 E-value=53 Score=31.73 Aligned_cols=32 Identities=13% Similarity=0.195 Sum_probs=27.5
Q ss_pred CcCCCCCCHHHHHHHHHHHhhCCCEEEEeeee
Q 021281 81 SLNSSYGSEHLLKALLHKMKQHKVRAMADIVI 112 (314)
Q Consensus 81 ~id~~~Gt~~df~~lv~~ah~~Gi~VilD~V~ 112 (314)
.++..-|..-+++++++.||++|+.||+|.+.
T Consensus 181 ~~~n~tG~~~~~~~I~~l~~~~g~~vivD~a~ 212 (424)
T PLN02855 181 HVSNVLGSILPVEDIVHWAHAVGAKVLVDACQ 212 (424)
T ss_pred CccccccccCCHHHHHHHHHHcCCEEEEEhhh
Confidence 44566788888999999999999999999884
No 275
>PRK09028 cystathionine beta-lyase; Provisional
Probab=46.31 E-value=28 Score=33.83 Aligned_cols=30 Identities=17% Similarity=0.057 Sum_probs=26.5
Q ss_pred CCCCCHHHHHHHHHHHhhCCCEEEEeeeec
Q 021281 84 SSYGSEHLLKALLHKMKQHKVRAMADIVIN 113 (314)
Q Consensus 84 ~~~Gt~~df~~lv~~ah~~Gi~VilD~V~N 113 (314)
.-.|...+++++++.||++|+.||+|-++-
T Consensus 157 NPtg~v~dl~~I~~la~~~g~~lvvD~t~a 186 (394)
T PRK09028 157 SITMEVQDVPTLSRIAHEHDIVVMLDNTWA 186 (394)
T ss_pred CCCCcHHHHHHHHHHHHHcCCEEEEECCcc
Confidence 345788999999999999999999998775
No 276
>PRK13125 trpA tryptophan synthase subunit alpha; Provisional
Probab=46.21 E-value=60 Score=29.11 Aligned_cols=24 Identities=8% Similarity=0.032 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHhhCCCEEEEeeee
Q 021281 89 EHLLKALLHKMKQHKVRAMADIVI 112 (314)
Q Consensus 89 ~~df~~lv~~ah~~Gi~VilD~V~ 112 (314)
.++.+++++.||++||++++=+-+
T Consensus 115 ~~~~~~~~~~~~~~Gl~~~~~v~p 138 (244)
T PRK13125 115 PDDLEKYVEIIKNKGLKPVFFTSP 138 (244)
T ss_pred HHHHHHHHHHHHHcCCCEEEEECC
Confidence 467899999999999999995544
No 277
>PRK12595 bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismate mutase; Reviewed
Probab=46.13 E-value=79 Score=30.35 Aligned_cols=60 Identities=13% Similarity=0.141 Sum_probs=42.3
Q ss_pred hHHHHHHhhhHHHHcCCCEEEeCCCCCCCCCCCCCcccCCCcCCCCCCHHHHHHHHHHHhhCCCEEEEee
Q 021281 41 WWRNLERKVPDISKSGFTSVWLPPATHSFAPEGYLPQNLYSLNSSYGSEHLLKALLHKMKQHKVRAMADI 110 (314)
Q Consensus 41 ~~~gi~~~ldyl~~lG~~~I~l~Pi~~~~~~~gY~~~d~~~id~~~Gt~~df~~lv~~ah~~Gi~VilD~ 110 (314)
.-+.+.+....|++.|+..+-=.+.-+..+.++ |..+ +.+.++.|-+.|++.||.++-++
T Consensus 130 ~~~~~~~~A~~lk~~g~~~~r~~~~kpRtsp~~-----f~g~-----~~e~l~~L~~~~~~~Gl~~~t~v 189 (360)
T PRK12595 130 SYEQVEAVAKALKAKGLKLLRGGAFKPRTSPYD-----FQGL-----GVEGLKILKQVADEYGLAVISEI 189 (360)
T ss_pred CHHHHHHHHHHHHHcCCcEEEccccCCCCCCcc-----ccCC-----CHHHHHHHHHHHHHcCCCEEEee
Confidence 577788888899999998776433322212222 2222 25899999999999999999865
No 278
>cd04795 SIS SIS domain. SIS (Sugar ISomerase) domains are found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars.
Probab=45.61 E-value=23 Score=25.46 Aligned_cols=65 Identities=17% Similarity=0.090 Sum_probs=37.3
Q ss_pred HHHHhhh-HHHHc-CCCEEEeCCCCCCCCC--CCCCcccCCCcCCCCCCHHHHHHHHHHHhhCCCEEEE
Q 021281 44 NLERKVP-DISKS-GFTSVWLPPATHSFAP--EGYLPQNLYSLNSSYGSEHLLKALLHKMKQHKVRAMA 108 (314)
Q Consensus 44 gi~~~ld-yl~~l-G~~~I~l~Pi~~~~~~--~gY~~~d~~~id~~~Gt~~df~~lv~~ah~~Gi~Vil 108 (314)
.+.+.+. .+..+ |++...+.+....... ......|..-+=..-|..++..++++.|+++|.++|.
T Consensus 11 ~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~iS~sg~t~~~~~~~~~a~~~g~~ii~ 79 (87)
T cd04795 11 AIAAYFALELLELTGIEVVALIATELEHASLLSLLRKGDVVIALSYSGRTEELLAALEIAKELGIPVIA 79 (87)
T ss_pred HHHHHHHHHHhcccCCceEEeCCcHHHHHHHHhcCCCCCEEEEEECCCCCHHHHHHHHHHHHcCCeEEE
Confidence 3334443 34666 8888776553211000 1112223222334556678899999999999999875
No 279
>TIGR03699 mena_SCO4550 menaquinone biosynthesis protein, SCO4550 family. members of this protein family are involved in menaquinone biosynthesis by an alternate pathway via futalosine.
Probab=45.47 E-value=30 Score=32.60 Aligned_cols=32 Identities=9% Similarity=0.110 Sum_probs=28.0
Q ss_pred CCCCCCHHHHHHHHHHHhhCCCEEEEeeeecc
Q 021281 83 NSSYGSEHLLKALLHKMKQHKVRAMADIVINH 114 (314)
Q Consensus 83 d~~~Gt~~df~~lv~~ah~~Gi~VilD~V~NH 114 (314)
.|+-.+.++..+.++.||+.||+|..-+.+.|
T Consensus 174 ~~~~~s~~~~l~~i~~a~~~Gi~v~~~~iiGl 205 (340)
T TIGR03699 174 SPKKISSEEWLEVMETAHKLGLPTTATMMFGH 205 (340)
T ss_pred CCCCCCHHHHHHHHHHHHHcCCCccceeEeeC
Confidence 35556888999999999999999999999997
No 280
>PTZ00376 aspartate aminotransferase; Provisional
Probab=45.46 E-value=75 Score=30.51 Aligned_cols=30 Identities=17% Similarity=0.216 Sum_probs=27.1
Q ss_pred CHHHHHHHHHHHhhCCCEEEEeeeeccccC
Q 021281 88 SEHLLKALLHKMKQHKVRAMADIVINHRVG 117 (314)
Q Consensus 88 t~~df~~lv~~ah~~Gi~VilD~V~NH~~~ 117 (314)
+.++++++++.|+++|+-||.|-++.+...
T Consensus 194 s~~~~~~l~~~a~~~~~~ii~De~Y~~~~~ 223 (404)
T PTZ00376 194 TEEQWKEIADVMKRKNLIPFFDMAYQGFAS 223 (404)
T ss_pred CHHHHHHHHHHHHhCCcEEEEehhhcCccC
Confidence 579999999999999999999999887665
No 281
>PRK13209 L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=45.40 E-value=51 Score=29.83 Aligned_cols=54 Identities=17% Similarity=0.091 Sum_probs=37.9
Q ss_pred HHHHhhhHHHHcCCCEEEeCCCCCCCCCCCCCcccCCCcCCCCCCHHHHHHHHHHHhhCCCEEEE
Q 021281 44 NLERKVPDISKSGFTSVWLPPATHSFAPEGYLPQNLYSLNSSYGSEHLLKALLHKMKQHKVRAMA 108 (314)
Q Consensus 44 gi~~~ldyl~~lG~~~I~l~Pi~~~~~~~gY~~~d~~~id~~~Gt~~df~~lv~~ah~~Gi~Vil 108 (314)
.+.+.++-++++||++|.|.+-- .+.+ +.+.--+.++++++.+.+.+.||+|..
T Consensus 22 ~~~e~~~~~~~~G~~~iEl~~~~----~~~~-------~~~~~~~~~~~~~l~~~l~~~gl~i~~ 75 (283)
T PRK13209 22 CWLEKLAIAKTAGFDFVEMSVDE----SDER-------LARLDWSREQRLALVNALVETGFRVNS 75 (283)
T ss_pred CHHHHHHHHHHcCCCeEEEecCc----cccc-------hhccCCCHHHHHHHHHHHHHcCCceeE
Confidence 46788899999999999995321 1111 111112567899999999999999864
No 282
>PRK00164 moaA molybdenum cofactor biosynthesis protein A; Reviewed
Probab=45.35 E-value=65 Score=30.10 Aligned_cols=59 Identities=10% Similarity=0.183 Sum_probs=38.0
Q ss_pred HHhhhHHHHcCCCEEEeCCCCCCCCCCCCCcccCCCcCCCCCCHHHHHHHHHHHhhCCC-EEEEeeee
Q 021281 46 ERKVPDISKSGFTSVWLPPATHSFAPEGYLPQNLYSLNSSYGSEHLLKALLHKMKQHKV-RAMADIVI 112 (314)
Q Consensus 46 ~~~ldyl~~lG~~~I~l~Pi~~~~~~~gY~~~d~~~id~~~Gt~~df~~lv~~ah~~Gi-~VilD~V~ 112 (314)
.+.++.|++.|++.|.++- ++.+..-|..+... ++.+.+.+-++.|.+.|+ .|.+-+|+
T Consensus 108 ~~~~~~L~~agl~~i~ISl-------ds~~~e~~~~i~~~-~~~~~vl~~i~~~~~~g~~~v~i~~vv 167 (331)
T PRK00164 108 ARRAAALKDAGLDRVNVSL-------DSLDPERFKAITGR-DRLDQVLAGIDAALAAGLTPVKVNAVL 167 (331)
T ss_pred HHHHHHHHHcCCCEEEEEe-------ccCCHHHhccCCCC-CCHHHHHHHHHHHHHCCCCcEEEEEEE
Confidence 3455666667776666543 22222223344433 678899999999999998 77777665
No 283
>cd07938 DRE_TIM_HMGL 3-hydroxy-3-methylglutaryl-CoA lyase, catalytic TIM barrel domain. 3-hydroxy-3-methylglutaryl-CoA lyase (HMGL) catalyzes the cleavage of HMG-CoA to acetyl-CoA and acetoacetate, one of the terminal steps in ketone body generation and leucine degradation, and is a key enzyme in the pathway that supplies metabolic fuel to extrahepatic tissues. Mutations in HMGL cause a human autosomal recessive disorder called primary metabolic aciduria that affects ketogenesis and leucine catabolism and can be fatal due to an inability to tolerate hypoglycemia. HMGL has a TIM barrel domain with a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. The cleavage of HMG-CoA requires the presence of a divalent cation like Mg2+ or Mn2+, and the reaction is thought to involve general acid/base catalysis. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropy
Probab=45.31 E-value=1.4e+02 Score=27.28 Aligned_cols=40 Identities=13% Similarity=0.163 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHHhCCCCEEEe-ccCCCCCHHHHHHHHHhhC
Q 021281 171 RKDIIAWLRWLRNTVGFQDFRF-DFARGYSAKYVKEYIEGAR 211 (314)
Q Consensus 171 ~~~l~~~~~~w~~~~gvDGfRl-Daa~~i~~~f~~~~~~~~~ 211 (314)
.+++.+.++... +.|+|.+++ |.+-...+....+++..++
T Consensus 148 ~~~~~~~~~~~~-~~Ga~~i~l~DT~G~~~P~~v~~lv~~l~ 188 (274)
T cd07938 148 PERVAEVAERLL-DLGCDEISLGDTIGVATPAQVRRLLEAVL 188 (274)
T ss_pred HHHHHHHHHHHH-HcCCCEEEECCCCCccCHHHHHHHHHHHH
Confidence 346777777776 899999987 6677777877777777665
No 284
>PRK05692 hydroxymethylglutaryl-CoA lyase; Provisional
Probab=45.24 E-value=1.3e+02 Score=27.71 Aligned_cols=39 Identities=13% Similarity=0.112 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHhCCCCEEEe-ccCCCCCHHHHHHHHHhhC
Q 021281 172 KDIIAWLRWLRNTVGFQDFRF-DFARGYSAKYVKEYIEGAR 211 (314)
Q Consensus 172 ~~l~~~~~~w~~~~gvDGfRl-Daa~~i~~~f~~~~~~~~~ 211 (314)
+++.+.++... +.|+|.+++ |.+-...+.-..+++..++
T Consensus 155 ~~~~~~~~~~~-~~G~d~i~l~DT~G~~~P~~v~~lv~~l~ 194 (287)
T PRK05692 155 EAVADVAERLF-ALGCYEISLGDTIGVGTPGQVRAVLEAVL 194 (287)
T ss_pred HHHHHHHHHHH-HcCCcEEEeccccCccCHHHHHHHHHHHH
Confidence 56777777777 889998887 6777777777776666654
No 285
>PF00704 Glyco_hydro_18: Glycosyl hydrolases family 18; InterPro: IPR001223 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Some members of this family, GH18 from CAZY, belong to the chitinase class II group which includes chitinase, chitodextrinase and the killer toxin of Kluyveromyces lactis. The chitinases hydrolyse chitin oligosaccharides. The family also includes various glycoproteins from mammals; cartilage glycoprotein and the oviduct-specific glycoproteins are two examples.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1ITX_A 3ALG_A 3ALF_A 1NAR_A 3QOK_A 3G6L_A 3G6M_A 2DT1_A 2B31_A 2O92_A ....
Probab=45.24 E-value=43 Score=31.05 Aligned_cols=45 Identities=18% Similarity=0.286 Sum_probs=33.4
Q ss_pred CHHHHHHHHHHHHHHHHhCCCCEEEeccCCCCC----------HHHHHHHHHhhC
Q 021281 167 QHFVRKDIIAWLRWLRNTVGFQDFRFDFARGYS----------AKYVKEYIEGAR 211 (314)
Q Consensus 167 ~p~v~~~l~~~~~~w~~~~gvDGfRlDaa~~i~----------~~f~~~~~~~~~ 211 (314)
++.-|+.+++.+..+++++|+||+-+|-=.... ..|++++.++++
T Consensus 96 ~~~~r~~f~~~i~~~l~~y~~DGidiD~e~~~~~~~~~~~~~~~~~l~~L~~~l~ 150 (343)
T PF00704_consen 96 NPAKRQNFINNIVSFLKKYGFDGIDIDWEYPSSSGDPQDKDNYTAFLKELRKALK 150 (343)
T ss_dssp SHHHHHHHHHHHHHHHHHHT-SEEEEEESSTTSTSSTTHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHhhhhhhcccCcceeeeeeeeccccccchhhhhhhhhhhhhhhhhc
Confidence 467899999999999999999999998754432 356666665543
No 286
>COG0329 DapA Dihydrodipicolinate synthase/N-acetylneuraminate lyase [Amino acid transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=44.88 E-value=43 Score=31.20 Aligned_cols=92 Identities=10% Similarity=-0.012 Sum_probs=55.8
Q ss_pred ccchhhcccccccCccccCCce-eEEEEeeCCCCCCchHHHHHHhhhHHHHcCCCEEEeCCCCCCCCCCCCCcccCCCcC
Q 021281 5 SKGFDETNQQTDLGAVIRNGRE-ILFQGFNWESCKHDWWRNLERKVPDISKSGFTSVWLPPATHSFAPEGYLPQNLYSLN 83 (314)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~-~i~q~F~w~~~~~g~~~gi~~~ldyl~~lG~~~I~l~Pi~~~~~~~gY~~~d~~~id 83 (314)
++|.+|-..-....-...+|+- ||.+.=.= ..+...+...+.+++|+++|-+.|++-.. .+
T Consensus 53 ~Ls~eEr~~v~~~~v~~~~grvpviaG~g~~------~t~eai~lak~a~~~Gad~il~v~PyY~k------------~~ 114 (299)
T COG0329 53 TLTLEERKEVLEAVVEAVGGRVPVIAGVGSN------STAEAIELAKHAEKLGADGILVVPPYYNK------------PS 114 (299)
T ss_pred hcCHHHHHHHHHHHHHHHCCCCcEEEecCCC------cHHHHHHHHHHHHhcCCCEEEEeCCCCcC------------CC
Confidence 3444444444444444455432 44443222 48888999999999999999998876332 22
Q ss_pred CCCCCHHHHHHHHHHHhhCCCEEEEeeeeccccCC
Q 021281 84 SSYGSEHLLKALLHKMKQHKVRAMADIVINHRVGT 118 (314)
Q Consensus 84 ~~~Gt~~df~~lv~~ah~~Gi~VilD~V~NH~~~~ 118 (314)
.-|-.+-|+.+.+++ ++.||+=-++..++.+
T Consensus 115 -~~gl~~hf~~ia~a~---~lPvilYN~P~~tg~~ 145 (299)
T COG0329 115 -QEGLYAHFKAIAEAV---DLPVILYNIPSRTGVD 145 (299)
T ss_pred -hHHHHHHHHHHHHhc---CCCEEEEeCccccCCC
Confidence 222334566665555 8888886666666554
No 287
>PRK13238 tnaA tryptophanase/L-cysteine desulfhydrase, PLP-dependent; Provisional
Probab=44.85 E-value=52 Score=32.62 Aligned_cols=23 Identities=22% Similarity=0.195 Sum_probs=21.6
Q ss_pred CHHHHHHHHHHHhhCCCEEEEee
Q 021281 88 SEHLLKALLHKMKQHKVRAMADI 110 (314)
Q Consensus 88 t~~df~~lv~~ah~~Gi~VilD~ 110 (314)
++++++++.+-|+++|+.||.|-
T Consensus 196 s~~~l~~I~~ia~~~gi~li~Da 218 (460)
T PRK13238 196 SMANLRAVYEIAKKYGIPVVIDA 218 (460)
T ss_pred CHHHHHHHHHHHHHcCCEEEEEC
Confidence 57899999999999999999996
No 288
>cd05008 SIS_GlmS_GlmD_1 SIS (Sugar ISomerase) domain repeat 1 found in Glucosamine 6-phosphate synthase (GlmS) and Glucosamine-6-phosphate deaminase (GlmD). The SIS domain is found in many phosphosugar isomerases and phosphosugar binding proteins. GlmS contains a N-terminal glutaminase domain and two C-terminal SIS domains and catalyzes the first step in hexosamine metabolism, converting fructose 6-phosphate into glucosamine 6-phosphate using glutamine as nitrogen source. The glutaminase domain hydrolyzes glutamine to glutamate and ammonia. Ammonia is transferred through a channel to the isomerase domain for glucosamine 6-phosphate synthesis. The end product of the pathway is N-acetylglucosamine, which plays multiple roles in eukaryotic cells including being a building block of bacterial and fungal cell walls. In the absence of glutamine, GlmS catalyzes the isomerization of fructose 6-phosphate into glucose 6- phosphate (PGI-like activity). Glucosamine-6-phosphate deaminase (GlmD) cont
Probab=44.26 E-value=40 Score=26.28 Aligned_cols=60 Identities=12% Similarity=-0.077 Sum_probs=36.2
Q ss_pred hhhHHHHcC-CCEEEeCCCCCCC-CCCCCCcccCCCcCCCCCCHHHHHHHHHHHhhCCCEEEE
Q 021281 48 KVPDISKSG-FTSVWLPPATHSF-APEGYLPQNLYSLNSSYGSEHLLKALLHKMKQHKVRAMA 108 (314)
Q Consensus 48 ~ldyl~~lG-~~~I~l~Pi~~~~-~~~gY~~~d~~~id~~~Gt~~df~~lv~~ah~~Gi~Vil 108 (314)
--.++..+| .......| .+.. ....-...|..-+=+.-|..++..+.++.|+++|.+||.
T Consensus 17 ~~~~l~~~~~~~~~~~~~-~~~~~~~~~~~~~d~~I~iS~sG~t~e~~~~~~~a~~~g~~vi~ 78 (126)
T cd05008 17 AKYLLERLAGIPVEVEAA-SEFRYRRPLLDEDTLVIAISQSGETADTLAALRLAKEKGAKTVA 78 (126)
T ss_pred HHHHHHHhcCCceEEEeh-hHhhhcCCCCCCCcEEEEEeCCcCCHHHHHHHHHHHHcCCeEEE
Confidence 334566776 66665542 1111 011122333333336667788899999999999999987
No 289
>PLN02998 beta-glucosidase
Probab=44.21 E-value=99 Score=31.05 Aligned_cols=63 Identities=11% Similarity=0.223 Sum_probs=42.1
Q ss_pred hHHHHHHhhhHHHHcCCCEEEeCCCCCCCCCCCCCcccCCCcCCCCCCHHHHHHHHHHHhhCCCEEEEee
Q 021281 41 WWRNLERKVPDISKSGFTSVWLPPATHSFAPEGYLPQNLYSLNSSYGSEHLLKALLHKMKQHKVRAMADI 110 (314)
Q Consensus 41 ~~~gi~~~ldyl~~lG~~~I~l~Pi~~~~~~~gY~~~d~~~id~~~Gt~~df~~lv~~ah~~Gi~VilD~ 110 (314)
.+....+-++-+++||+++-=++=-....-+.|-. .+| --..+=.++||++|.++||+.|+-+
T Consensus 80 ~Yhry~EDi~lmk~lG~~~YRfSIsWsRI~P~G~g-----~vN--~~gl~~Y~~lid~L~~~GIeP~VTL 142 (497)
T PLN02998 80 QYHKYKEDVKLMADMGLEAYRFSISWSRLLPSGRG-----PIN--PKGLQYYNNLIDELITHGIQPHVTL 142 (497)
T ss_pred HHHhhHHHHHHHHHcCCCeEEeeccHHhcCcCCCC-----CcC--HHHHHHHHHHHHHHHHcCCceEEEe
Confidence 78889999999999999987553221111111210 121 1124558899999999999999844
No 290
>cd00019 AP2Ec AP endonuclease family 2; These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites; the alignment also contains hexulose-6-phosphate isomerases, enzymes that catalyze the epimerization of D-arabino-6-hexulose 3-phosphate to D-fructose 6-phosphate, via cleaving the phosphoesterbond with the sugar.
Probab=44.04 E-value=75 Score=28.71 Aligned_cols=53 Identities=13% Similarity=0.210 Sum_probs=37.1
Q ss_pred HHHHhhhHHHHcCCCEEEeCCCCCCCCCCCCCcccCCCcCCCCCCHHHHHHHHHHHhhC-CCEEEE
Q 021281 44 NLERKVPDISKSGFTSVWLPPATHSFAPEGYLPQNLYSLNSSYGSEHLLKALLHKMKQH-KVRAMA 108 (314)
Q Consensus 44 gi~~~ldyl~~lG~~~I~l~Pi~~~~~~~gY~~~d~~~id~~~Gt~~df~~lv~~ah~~-Gi~Vil 108 (314)
.+.+.++.++++||+.|.|..-. .+++ ..+.. +.++++++.+.+.++ |+.+.+
T Consensus 11 ~l~~~l~~a~~~G~d~vEl~~~~----~~~~-------~~~~~-~~~~~~~l~~~~~~~~~~~i~~ 64 (279)
T cd00019 11 GLENALKRAKEIGFDTVAMFLGN----PRSW-------LSRPL-KKERAEKFKAIAEEGPSICLSV 64 (279)
T ss_pred cHHHHHHHHHHcCCCEEEEEcCC----CCcc-------CCCCC-CHHHHHHHHHHHHHcCCCcEEE
Confidence 46788999999999999987421 1111 11112 567888898988888 777765
No 291
>PF00155 Aminotran_1_2: Aminotransferase class I and II 1-aminocyclopropane-1-carboxylate synthase signature aspartate aminotransferase signature; InterPro: IPR004839 Aminotransferases share certain mechanistic features with other pyridoxal-phosphate dependent enzymes, such as the covalent binding of the pyridoxal-phosphate group to a lysine residue. On the basis of sequence similarity, these various enzymes can be grouped [] into class I and class II. This entry includes proteins from both subfamilies.; GO: 0016769 transferase activity, transferring nitrogenous groups, 0030170 pyridoxal phosphate binding, 0009058 biosynthetic process; PDB: 3NRA_B 3P6K_B 3OP7_A 3ASB_A 3ASA_A 1W7M_A 3FVX_A 1W7N_A 3FVU_B 3FVS_A ....
Probab=43.94 E-value=45 Score=31.09 Aligned_cols=64 Identities=16% Similarity=0.162 Sum_probs=47.3
Q ss_pred hHHHHHHhhhHHHHcCC--CEEEeCCCCCCCCCCCCCcccCCCcCCCCCCHHHHHHHHHHHhhCCCEEEEeeeeccccCC
Q 021281 41 WWRNLERKVPDISKSGF--TSVWLPPATHSFAPEGYLPQNLYSLNSSYGSEHLLKALLHKMKQHKVRAMADIVINHRVGT 118 (314)
Q Consensus 41 ~~~gi~~~ldyl~~lG~--~~I~l~Pi~~~~~~~gY~~~d~~~id~~~Gt~~df~~lv~~ah~~Gi~VilD~V~NH~~~~ 118 (314)
+++.+++.++..+.-+. ..|++..++. ..|... +.++++++++.|.++|+-||.|-+..-....
T Consensus 131 d~~~l~~~l~~~~~~~~~~~~v~~~~p~n---PtG~~~-----------~~~~l~~l~~~~~~~~~~ii~De~y~~~~~~ 196 (363)
T PF00155_consen 131 DPEALEEALDELPSKGPRPKAVLICNPNN---PTGSVL-----------SLEELRELAELAREYNIIIIVDEAYSDLIFG 196 (363)
T ss_dssp THHHHHHHHHTSHTTTETEEEEEEESSBT---TTTBB-------------HHHHHHHHHHHHHTTSEEEEEETTTTGBSS
T ss_pred cccccccccccccccccccceeeeccccc---cccccc-----------ccccccchhhhhcccccceeeeeceeccccC
Confidence 78889888888877764 6666654432 224311 5799999999999999999999988766554
No 292
>PRK07259 dihydroorotate dehydrogenase 1B; Reviewed
Probab=43.94 E-value=1.4e+02 Score=27.55 Aligned_cols=70 Identities=13% Similarity=0.101 Sum_probs=46.2
Q ss_pred eeEEEEeeCCCCCCchHHHHHHhhhHHHHcC-CCEEEeCCCCCCCCCC-CCCcccCCCcCCCCCCHHHHHHHHHHHhhC-
Q 021281 26 EILFQGFNWESCKHDWWRNLERKVPDISKSG-FTSVWLPPATHSFAPE-GYLPQNLYSLNSSYGSEHLLKALLHKMKQH- 102 (314)
Q Consensus 26 ~~i~q~F~w~~~~~g~~~gi~~~ldyl~~lG-~~~I~l~Pi~~~~~~~-gY~~~d~~~id~~~Gt~~df~~lv~~ah~~- 102 (314)
-+|+|+..-+ -+...+.+..+++.| +++|.|+=-.++. .+ |+... .+++-+.++|++.++.
T Consensus 93 p~i~si~g~~------~~~~~~~a~~~~~aG~~D~iElN~~cP~~-~~gg~~~~---------~~~~~~~eiv~~vr~~~ 156 (301)
T PRK07259 93 PIIANVAGST------EEEYAEVAEKLSKAPNVDAIELNISCPNV-KHGGMAFG---------TDPELAYEVVKAVKEVV 156 (301)
T ss_pred cEEEEeccCC------HHHHHHHHHHHhccCCcCEEEEECCCCCC-CCCccccc---------cCHHHHHHHHHHHHHhc
Confidence 4788887543 677777778889999 9999995333222 22 33211 2556788888888776
Q ss_pred CCEEEEeee
Q 021281 103 KVRAMADIV 111 (314)
Q Consensus 103 Gi~VilD~V 111 (314)
.+.|++-+.
T Consensus 157 ~~pv~vKl~ 165 (301)
T PRK07259 157 KVPVIVKLT 165 (301)
T ss_pred CCCEEEEcC
Confidence 677776654
No 293
>COG0134 TrpC Indole-3-glycerol phosphate synthase [Amino acid transport and metabolism]
Probab=43.92 E-value=28 Score=31.69 Aligned_cols=23 Identities=9% Similarity=0.371 Sum_probs=20.7
Q ss_pred CHHHHHHHHHHHhhCCCEEEEee
Q 021281 88 SEHLLKALLHKMKQHKVRAMADI 110 (314)
Q Consensus 88 t~~df~~lv~~ah~~Gi~VilD~ 110 (314)
+.+++++|++.||+.||.|++.+
T Consensus 141 ~~~~l~el~~~A~~LGm~~LVEV 163 (254)
T COG0134 141 DDEQLEELVDRAHELGMEVLVEV 163 (254)
T ss_pred CHHHHHHHHHHHHHcCCeeEEEE
Confidence 35679999999999999999976
No 294
>PRK08247 cystathionine gamma-synthase; Reviewed
Probab=43.78 E-value=29 Score=33.07 Aligned_cols=27 Identities=19% Similarity=0.171 Sum_probs=25.3
Q ss_pred CCCHHHHHHHHHHHhhCCCEEEEeeee
Q 021281 86 YGSEHLLKALLHKMKQHKVRAMADIVI 112 (314)
Q Consensus 86 ~Gt~~df~~lv~~ah~~Gi~VilD~V~ 112 (314)
.|+..+++++++.||++|+.||+|-++
T Consensus 149 ~~~~~dl~~I~~la~~~g~~lIvD~t~ 175 (366)
T PRK08247 149 LMQETDIAAIAKIAKKHGLLLIVDNTF 175 (366)
T ss_pred CCcHHHHHHHHHHHHHcCCEEEEECCC
Confidence 688999999999999999999999876
No 295
>cd00615 Orn_deC_like Ornithine decarboxylase family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD corresponds to ornithine decarboxylase (ODC), arginine decarboxylase (ADC) and lysine decarboxylase (LDC). ODC is a dodecamer composed of six homodimers and catalyzes the decarboxylation of tryptophan. ADC catalyzes the decarboxylation of arginine and LDC catalyzes the decarboxylation of lysine. Members of this family are widely found in all three forms of life.
Probab=43.66 E-value=17 Score=33.40 Aligned_cols=26 Identities=15% Similarity=0.303 Sum_probs=24.0
Q ss_pred CCCHHHHHHHHHHHhhCCCEEEEeee
Q 021281 86 YGSEHLLKALLHKMKQHKVRAMADIV 111 (314)
Q Consensus 86 ~Gt~~df~~lv~~ah~~Gi~VilD~V 111 (314)
.|...+++++++.||++|+.||+|-+
T Consensus 166 ~G~~~dl~~I~~~~~~~g~~livDeA 191 (294)
T cd00615 166 YGICYNLRKIVEEAHHRGLPVLVDEA 191 (294)
T ss_pred CCEecCHHHHHHHHHhcCCeEEEECc
Confidence 57778899999999999999999987
No 296
>PRK00854 rocD ornithine--oxo-acid transaminase; Reviewed
Probab=43.63 E-value=69 Score=30.56 Aligned_cols=60 Identities=10% Similarity=0.090 Sum_probs=41.3
Q ss_pred hHHHHHHhhhHHHHcCCCEEEeCCCCCCCCCCCCCcccCCCcCCCCCCHHHHHHHHHHHhhCCCEEEEeeeeccccC
Q 021281 41 WWRNLERKVPDISKSGFTSVWLPPATHSFAPEGYLPQNLYSLNSSYGSEHLLKALLHKMKQHKVRAMADIVINHRVG 117 (314)
Q Consensus 41 ~~~gi~~~ldyl~~lG~~~I~l~Pi~~~~~~~gY~~~d~~~id~~~Gt~~df~~lv~~ah~~Gi~VilD~V~NH~~~ 117 (314)
|++.+++.+. -...+|.+.|++.. .|.- +. ..+.|+++.+-|+++|+.+|+|=|...++.
T Consensus 176 d~~~le~~i~----~~~~aii~e~~~~~---~G~~------~~----~~~~l~~l~~l~~~~gi~lI~DEv~~g~g~ 235 (401)
T PRK00854 176 DAEALEAAIT----PNTVAFLVEPIQGE---AGVI------IP----PAGYFTRVRELCTANNVTLILDEIQTGLGR 235 (401)
T ss_pred CHHHHHHHhC----CCeEEEEEccccCC---CCCc------CC----CHHHHHHHHHHHHHcCCEEEEechhhCCCC
Confidence 4666666553 14668888887633 2311 11 246799999999999999999999875554
No 297
>PF12996 DUF3880: DUF based on E. rectale Gene description (DUF3880); InterPro: IPR024542 This entry represents proteins of unknown function. The Eubacterium rectale gene appears to be upregulated in the presence of Bacteroides thetaiotaomicron compared to growth in pure culture [].
Probab=43.63 E-value=24 Score=25.76 Aligned_cols=24 Identities=17% Similarity=0.188 Sum_probs=20.3
Q ss_pred HHhhhHHHHcCCCEEEeCCCCCCC
Q 021281 46 ERKVPDISKSGFTSVWLPPATHSF 69 (314)
Q Consensus 46 ~~~ldyl~~lG~~~I~l~Pi~~~~ 69 (314)
...++.++++|+..|+-+|+.-.+
T Consensus 27 ~~~~~~~~~~G~~~V~yLPLAa~~ 50 (79)
T PF12996_consen 27 RSFVEEYRNLGAENVFYLPLAANP 50 (79)
T ss_pred HHHHHHHHHcCCCCEEEccccCCH
Confidence 468899999999999999987554
No 298
>cd06548 GH18_chitinase The GH18 (glycosyl hydrolases, family 18) type II chitinases hydrolyze chitin, an abundant polymer of N-acetylglucosamine and have been identified in bacteria, fungi, insects, plants, viruses, and protozoan parasites. The structure of this domain is an eight-stranded alpha/beta barrel with a pronounced active-site cleft at the C-terminal end of the beta-barrel.
Probab=43.40 E-value=33 Score=32.11 Aligned_cols=30 Identities=13% Similarity=0.160 Sum_probs=26.5
Q ss_pred CCHHHHHHHHHHHHHHHHhCCCCEEEeccC
Q 021281 166 TQHFVRKDIIAWLRWLRNTVGFQDFRFDFA 195 (314)
Q Consensus 166 ~~p~v~~~l~~~~~~w~~~~gvDGfRlDaa 195 (314)
.+++.|+.+++.+..+++++|+||+-+|--
T Consensus 105 ~~~~~r~~Fi~siv~~l~~~~fDGidiDwE 134 (322)
T cd06548 105 ATEASRAKFADSAVDFIRKYGFDGIDIDWE 134 (322)
T ss_pred CCHHHHHHHHHHHHHHHHhcCCCeEEECCc
Confidence 368899999999999999999999999953
No 299
>PLN02591 tryptophan synthase
Probab=43.08 E-value=69 Score=29.08 Aligned_cols=43 Identities=12% Similarity=0.244 Sum_probs=34.5
Q ss_pred HHHHhhhHHHHcCCCEEEeCCCCCCCCCCCCCcccCCCcCCCCCCHHHHHHHHHHHhhCCCEEEE
Q 021281 44 NLERKVPDISKSGFTSVWLPPATHSFAPEGYLPQNLYSLNSSYGSEHLLKALLHKMKQHKVRAMA 108 (314)
Q Consensus 44 gi~~~ldyl~~lG~~~I~l~Pi~~~~~~~gY~~~d~~~id~~~Gt~~df~~lv~~ah~~Gi~Vil 108 (314)
|+++-+..+++.|+++|-++. + ..|+..+++++|+++||..|+
T Consensus 94 G~~~F~~~~~~aGv~GviipD---------------------L-P~ee~~~~~~~~~~~gl~~I~ 136 (250)
T PLN02591 94 GIDKFMATIKEAGVHGLVVPD---------------------L-PLEETEALRAEAAKNGIELVL 136 (250)
T ss_pred HHHHHHHHHHHcCCCEEEeCC---------------------C-CHHHHHHHHHHHHHcCCeEEE
Confidence 777777778888888877762 1 248899999999999999999
No 300
>PRK03170 dihydrodipicolinate synthase; Provisional
Probab=43.04 E-value=57 Score=29.98 Aligned_cols=35 Identities=6% Similarity=-0.133 Sum_probs=28.4
Q ss_pred eeEEEEeeCCCCCCchHHHHHHhhhHHHHcCCCEEEeCCCC
Q 021281 26 EILFQGFNWESCKHDWWRNLERKVPDISKSGFTSVWLPPAT 66 (314)
Q Consensus 26 ~~i~q~F~w~~~~~g~~~gi~~~ldyl~~lG~~~I~l~Pi~ 66 (314)
.+|.++..-+ .+...+.+.+.+++|+++|.++|++
T Consensus 72 ~vi~gv~~~~------~~~~i~~a~~a~~~G~d~v~~~pP~ 106 (292)
T PRK03170 72 PVIAGTGSNS------TAEAIELTKFAEKAGADGALVVTPY 106 (292)
T ss_pred cEEeecCCch------HHHHHHHHHHHHHcCCCEEEECCCc
Confidence 4566665534 7889999999999999999998875
No 301
>TIGR01324 cysta_beta_ly_B cystathionine beta-lyase, bacterial. This model represents cystathionine beta-lyase (alternate name: beta-cystathionase), one of several pyridoxal-dependent enzymes of cysteine, methionine, and homocysteine metabolism. This enzyme is involved in the biosynthesis of Met from Cys.
Probab=42.90 E-value=34 Score=32.91 Aligned_cols=32 Identities=13% Similarity=-0.028 Sum_probs=27.6
Q ss_pred cCCCCCCHHHHHHHHHHHhhCCCEEEEeeeec
Q 021281 82 LNSSYGSEHLLKALLHKMKQHKVRAMADIVIN 113 (314)
Q Consensus 82 id~~~Gt~~df~~lv~~ah~~Gi~VilD~V~N 113 (314)
+....|...+++++++.||++|+.||+|-+.-
T Consensus 144 p~Np~g~~~dl~~I~~la~~~g~~livD~t~a 175 (377)
T TIGR01324 144 PSSITFEIQDIPAIAKAARNPGIVIMIDNTWA 175 (377)
T ss_pred CCCCCCcHHHHHHHHHHHHHcCCEEEEECCCc
Confidence 34456889999999999999999999998765
No 302
>PRK13398 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=42.77 E-value=1e+02 Score=28.24 Aligned_cols=60 Identities=13% Similarity=0.113 Sum_probs=42.9
Q ss_pred hHHHHHHhhhHHHHcCCCEEEeCCCCCCCCCCCCCcccCCCcCCCCCCHHHHHHHHHHHhhCCCEEEEee
Q 021281 41 WWRNLERKVPDISKSGFTSVWLPPATHSFAPEGYLPQNLYSLNSSYGSEHLLKALLHKMKQHKVRAMADI 110 (314)
Q Consensus 41 ~~~gi~~~ldyl~~lG~~~I~l~Pi~~~~~~~gY~~~d~~~id~~~Gt~~df~~lv~~ah~~Gi~VilD~ 110 (314)
+.+.+.+....||++|+..+-.. .++.. +..| +|.-+ ..+.++.|-+.|++.||.++-++
T Consensus 39 ~~~~~~~~A~~lk~~g~~~~r~~-~~kpR-Ts~~---s~~G~-----g~~gl~~l~~~~~~~Gl~~~te~ 98 (266)
T PRK13398 39 SEEQMVKVAEKLKELGVHMLRGG-AFKPR-TSPY---SFQGL-----GEEGLKILKEVGDKYNLPVVTEV 98 (266)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEe-eecCC-CCCC---ccCCc-----HHHHHHHHHHHHHHcCCCEEEee
Confidence 78899999999999999855543 33322 1111 11111 27899999999999999999876
No 303
>PF13407 Peripla_BP_4: Periplasmic binding protein domain; PDB: 3BRS_B 3GBP_A 3GA5_A 1GCG_A 1GCA_A 3H75_A 3D02_A 3L49_B 3EJW_B 3T95_A ....
Probab=42.67 E-value=52 Score=28.78 Aligned_cols=47 Identities=13% Similarity=0.186 Sum_probs=35.9
Q ss_pred chHHHHHHhhhHHHHcCCCEEEeCCCCCCCCCCCCCcccCCCcCCCCCCHHHHHHHHHHHhhCCCEEEE
Q 021281 40 DWWRNLERKVPDISKSGFTSVWLPPATHSFAPEGYLPQNLYSLNSSYGSEHLLKALLHKMKQHKVRAMA 108 (314)
Q Consensus 40 g~~~gi~~~ldyl~~lG~~~I~l~Pi~~~~~~~gY~~~d~~~id~~~Gt~~df~~lv~~ah~~Gi~Vil 108 (314)
++-+...+.++.+.+.|+++|-+.|+.. +.+..++++|.+.||+||+
T Consensus 39 ~d~~~q~~~i~~~i~~~~d~Iiv~~~~~----------------------~~~~~~l~~~~~~gIpvv~ 85 (257)
T PF13407_consen 39 NDPEEQIEQIEQAISQGVDGIIVSPVDP----------------------DSLAPFLEKAKAAGIPVVT 85 (257)
T ss_dssp TTHHHHHHHHHHHHHTTESEEEEESSST----------------------TTTHHHHHHHHHTTSEEEE
T ss_pred CCHHHHHHHHHHHHHhcCCEEEecCCCH----------------------HHHHHHHHHHhhcCceEEE
Confidence 3567777888888888888888777542 2245788899999999998
No 304
>TIGR01977 am_tr_V_EF2568 cysteine desulfurase family protein. This model describes a subfamily of probable pyridoxal phosphate-dependent enzymes in the aminotransferase class V family. Related families contain members active as cysteine desulfurases, selenocysteine lyases, or both. The members of this family form a distinct clade and all are shorter at the N-terminus. The function of this subfamily is unknown.
Probab=42.66 E-value=75 Score=29.77 Aligned_cols=32 Identities=6% Similarity=0.041 Sum_probs=26.9
Q ss_pred cCCCCCCHHHHHHHHHHHhhCCCEEEEeeeec
Q 021281 82 LNSSYGSEHLLKALLHKMKQHKVRAMADIVIN 113 (314)
Q Consensus 82 id~~~Gt~~df~~lv~~ah~~Gi~VilD~V~N 113 (314)
++...|...+++++++.||++|+.||+|-+--
T Consensus 146 ~~n~tG~~~~~~~i~~l~~~~~~~livD~a~~ 177 (376)
T TIGR01977 146 ASNVTGTILPIEEIGELAQENGIFFILDAAQT 177 (376)
T ss_pred CCCCccccCCHHHHHHHHHHcCCEEEEEhhhc
Confidence 34567888889999999999999999999863
No 305
>PRK09058 coproporphyrinogen III oxidase; Provisional
Probab=42.60 E-value=46 Score=32.80 Aligned_cols=32 Identities=9% Similarity=0.113 Sum_probs=27.0
Q ss_pred CCCHHHHHHHHHHHhhCC-CEEEEeeeeccccC
Q 021281 86 YGSEHLLKALLHKMKQHK-VRAMADIVINHRVG 117 (314)
Q Consensus 86 ~Gt~~df~~lv~~ah~~G-i~VilD~V~NH~~~ 117 (314)
.-+.++..+.++.+++.| +.|.+|++++.-+.
T Consensus 195 ~~~~~~~~~~i~~l~~~g~~~v~~DlI~GlPgq 227 (449)
T PRK09058 195 KDDREEVLARLEELVARDRAAVVCDLIFGLPGQ 227 (449)
T ss_pred CCCHHHHHHHHHHHHhCCCCcEEEEEEeeCCCC
Confidence 336788999999999999 88999999986554
No 306
>PRK00278 trpC indole-3-glycerol-phosphate synthase; Reviewed
Probab=42.19 E-value=31 Score=31.41 Aligned_cols=23 Identities=17% Similarity=0.333 Sum_probs=21.3
Q ss_pred CHHHHHHHHHHHhhCCCEEEEee
Q 021281 88 SEHLLKALLHKMKQHKVRAMADI 110 (314)
Q Consensus 88 t~~df~~lv~~ah~~Gi~VilD~ 110 (314)
+.+++++|++.||+.|+.+|+|+
T Consensus 145 ~~~~l~~li~~a~~lGl~~lvev 167 (260)
T PRK00278 145 DDEQLKELLDYAHSLGLDVLVEV 167 (260)
T ss_pred CHHHHHHHHHHHHHcCCeEEEEe
Confidence 45799999999999999999997
No 307
>TIGR01212 radical SAM protein, TIGR01212 family. This uncharacterized protein family shows significant similarity to TIGR01211, a longer protein that is a histone acetyltransferase at its C-terminus and is a subunit of RNA polymerase II (in yeast). This family lacks the GNAT acetyltransferase domain.
Probab=42.16 E-value=55 Score=30.45 Aligned_cols=27 Identities=0% Similarity=0.165 Sum_probs=24.4
Q ss_pred CHHHHHHHHHHHhhCCCEEEEeeeecc
Q 021281 88 SEHLLKALLHKMKQHKVRAMADIVINH 114 (314)
Q Consensus 88 t~~df~~lv~~ah~~Gi~VilD~V~NH 114 (314)
+.+++.+.++.++++||+|..++.++-
T Consensus 161 t~~~~~~ai~~l~~~gi~v~~~lI~Gl 187 (302)
T TIGR01212 161 DFACYVDAVKRARKRGIKVCSHVILGL 187 (302)
T ss_pred hHHHHHHHHHHHHHcCCEEEEeEEECC
Confidence 678999999999999999999998874
No 308
>PRK09856 fructoselysine 3-epimerase; Provisional
Probab=41.94 E-value=1.2e+02 Score=27.24 Aligned_cols=61 Identities=13% Similarity=0.103 Sum_probs=42.1
Q ss_pred hHHHHHHhhhHHHHcCCCEEEeCCCCCCCCCCCCCcccCCCcCCCCC-CHHHHHHHHHHHhhCCCEEEEee
Q 021281 41 WWRNLERKVPDISKSGFTSVWLPPATHSFAPEGYLPQNLYSLNSSYG-SEHLLKALLHKMKQHKVRAMADI 110 (314)
Q Consensus 41 ~~~gi~~~ldyl~~lG~~~I~l~Pi~~~~~~~gY~~~d~~~id~~~G-t~~df~~lv~~ah~~Gi~VilD~ 110 (314)
.++.+.+.++..+.+|...|-+.|... +|... -+..+- ..+.+++|++.|.+.||++.+.-
T Consensus 88 ~~~~~~~~i~~a~~lGa~~i~~~~~~~-----~~~~~----~~~~~~~~~~~l~~l~~~a~~~gv~l~iE~ 149 (275)
T PRK09856 88 SLDMIKLAMDMAKEMNAGYTLISAAHA-----GYLTP----PNVIWGRLAENLSELCEYAENIGMDLILEP 149 (275)
T ss_pred HHHHHHHHHHHHHHhCCCEEEEcCCCC-----CCCCC----HHHHHHHHHHHHHHHHHHHHHcCCEEEEec
Confidence 567778888999999999998877532 22111 000000 12458999999999999999973
No 309
>COG1082 IolE Sugar phosphate isomerases/epimerases [Carbohydrate transport and metabolism]
Probab=41.85 E-value=57 Score=29.11 Aligned_cols=22 Identities=32% Similarity=0.436 Sum_probs=19.5
Q ss_pred HHHHHhhhHHHHcCCCEEEeCC
Q 021281 43 RNLERKVPDISKSGFTSVWLPP 64 (314)
Q Consensus 43 ~gi~~~ldyl~~lG~~~I~l~P 64 (314)
..+.+.++.++++|++.|.+.|
T Consensus 15 ~~l~~~l~~~~~~G~~gvEi~~ 36 (274)
T COG1082 15 LPLEEILRKAAELGFDGVELSP 36 (274)
T ss_pred CCHHHHHHHHHHhCCCeEecCC
Confidence 5577889999999999999997
No 310
>cd02876 GH18_SI-CLP Stabilin-1 interacting chitinase-like protein (SI-CLP) is a eukaryotic chitinase-like protein of unknown function that interacts with the endocytic/sorting transmembrane receptor stabilin-1 and is secreted from the lysosome. SI-CLP has a glycosyl hydrolase family 18 (GH18) domain but lacks a chitin-binding domain. The catalytic amino acids of the GH18 domain are not conserved in SI-CLP, similar to the chitolectins YKL-39, YKL-40, and YM1/2. Human SI-CLP is sorted to late endosomes and secretory lysosomes in alternatively activated macrophages.
Probab=41.78 E-value=33 Score=32.00 Aligned_cols=46 Identities=15% Similarity=0.131 Sum_probs=34.3
Q ss_pred CCHHHHHHHHHHHHHHHHhCCCCEEEecc---C--CCCC------HHHHHHHHHhhC
Q 021281 166 TQHFVRKDIIAWLRWLRNTVGFQDFRFDF---A--RGYS------AKYVKEYIEGAR 211 (314)
Q Consensus 166 ~~p~v~~~l~~~~~~w~~~~gvDGfRlDa---a--~~i~------~~f~~~~~~~~~ 211 (314)
.+|..|+.+++.+..+++++|+||+-+|. . ...+ ..|++++.++++
T Consensus 88 ~~~~~R~~fi~s~~~~~~~~~~DGidiD~we~p~~~~~~~d~~~~~~~l~el~~~l~ 144 (318)
T cd02876 88 NDEQEREKLIKLLVTTAKKNHFDGIVLEVWSQLAAYGVPDKRKELIQLVIHLGETLH 144 (318)
T ss_pred cCHHHHHHHHHHHHHHHHHcCCCcEEEechhhhcccCCHHHHHHHHHHHHHHHHHHh
Confidence 35889999999999999999999999993 1 1111 256777776654
No 311
>PRK12581 oxaloacetate decarboxylase; Provisional
Probab=41.73 E-value=1.4e+02 Score=29.78 Aligned_cols=41 Identities=20% Similarity=0.264 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHHHhCCCCEEEe-ccCCCCCHHHHHHHHHhhC
Q 021281 170 VRKDIIAWLRWLRNTVGFQDFRF-DFARGYSAKYVKEYIEGAR 211 (314)
Q Consensus 170 v~~~l~~~~~~w~~~~gvDGfRl-Daa~~i~~~f~~~~~~~~~ 211 (314)
..+++.+.++... +.|+|.+.+ |++..+.+....+++.+++
T Consensus 161 t~~y~~~~a~~l~-~~Gad~I~IkDtaG~l~P~~v~~Lv~alk 202 (468)
T PRK12581 161 TLNYYLSLVKELV-EMGADSICIKDMAGILTPKAAKELVSGIK 202 (468)
T ss_pred cHHHHHHHHHHHH-HcCCCEEEECCCCCCcCHHHHHHHHHHHH
Confidence 5678888888887 899999998 7777788888888887765
No 312
>TIGR00423 radical SAM domain protein, CofH subfamily. This protein family includes the CofH protein of coenzyme F(420) biosynthesis from Methanocaldococcus jannaschii, but appears to hit genomes more broadly than just the subset that make coenzyme F(420), so that narrower group is being built as a separate family.
Probab=41.56 E-value=42 Score=31.20 Aligned_cols=32 Identities=9% Similarity=0.104 Sum_probs=27.1
Q ss_pred CCCCCHHHHHHHHHHHhhCCCEEEEeeeeccc
Q 021281 84 SSYGSEHLLKALLHKMKQHKVRAMADIVINHR 115 (314)
Q Consensus 84 ~~~Gt~~df~~lv~~ah~~Gi~VilD~V~NH~ 115 (314)
|.--+.++..+.++.||+.||++..-+.+.|-
T Consensus 139 ~~~~t~~~~l~~i~~a~~~Gi~~~s~~iiG~~ 170 (309)
T TIGR00423 139 PNKLSSDEWLEVIKTAHRLGIPTTATMMFGHV 170 (309)
T ss_pred CCCCCHHHHHHHHHHHHHcCCCceeeEEecCC
Confidence 44447788889999999999999999999875
No 313
>cd00609 AAT_like Aspartate aminotransferase family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Pyridoxal phosphate combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the substrate in four kinds of reactions (1) transamination (movement of amino groups), (2) racemization (redistribution of enantiomers), (3) decarboxylation (removing COOH groups), and (4) various side-chain reactions depending on the enzyme involved. Pyridoxal phosphate (PLP) dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalyzed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary hi
Probab=41.11 E-value=28 Score=31.83 Aligned_cols=27 Identities=26% Similarity=0.295 Sum_probs=23.9
Q ss_pred CHHHHHHHHHHHhhCCCEEEEeeeecc
Q 021281 88 SEHLLKALLHKMKQHKVRAMADIVINH 114 (314)
Q Consensus 88 t~~df~~lv~~ah~~Gi~VilD~V~NH 114 (314)
+.++++++++.||++|+.||+|-+...
T Consensus 150 ~~~~l~~l~~~~~~~~~~~ivD~a~~~ 176 (350)
T cd00609 150 SEEELEELAELAKKHGILIISDEAYAE 176 (350)
T ss_pred CHHHHHHHHHHHHhCCeEEEEecchhh
Confidence 467899999999999999999998654
No 314
>TIGR01814 kynureninase kynureninase. This model describes kynureninase, a pyridoxal-phosphate enzyme. Kynurinine is a Trp breakdown product and a precursor for NAD. In Chlamydia psittaci, an obligate intracellular pathogen, kynureninase makes anthranilate, a Trp precursor, from kynurenine. This counters the tryptophan hydrolysis that occurs in the host cell in response to the pathogen.
Probab=40.98 E-value=23 Score=34.12 Aligned_cols=31 Identities=10% Similarity=0.030 Sum_probs=27.2
Q ss_pred CcCCCCCCHHHHHHHHHHHhhCCCEEEEeee
Q 021281 81 SLNSSYGSEHLLKALLHKMKQHKVRAMADIV 111 (314)
Q Consensus 81 ~id~~~Gt~~df~~lv~~ah~~Gi~VilD~V 111 (314)
.++..-|...+++++.+.||++|+.|++|.+
T Consensus 179 ~v~~~tG~~~~~~~i~~~~~~~g~~~~vD~a 209 (406)
T TIGR01814 179 GVQYYTGQLFDMAAITRAAHAKGALVGFDLA 209 (406)
T ss_pred ccccccceecCHHHHHHHHHHcCCEEEEEcc
Confidence 3556678889999999999999999999976
No 315
>PLN02808 alpha-galactosidase
Probab=40.78 E-value=44 Score=32.42 Aligned_cols=61 Identities=10% Similarity=0.121 Sum_probs=38.2
Q ss_pred hHHHHHHhhhH-----HHHcCCCEEEeCCCCCCC--CCCCCCcccCCCcCC-CCCCHHHHHHHHHHHhhCCCEEEE
Q 021281 41 WWRNLERKVPD-----ISKSGFTSVWLPPATHSF--APEGYLPQNLYSLNS-SYGSEHLLKALLHKMKQHKVRAMA 108 (314)
Q Consensus 41 ~~~gi~~~ldy-----l~~lG~~~I~l~Pi~~~~--~~~gY~~~d~~~id~-~~Gt~~df~~lv~~ah~~Gi~Vil 108 (314)
+-+.|.+.++. |+++|++.|.|=-=.... ...|. ..+|| +|- ..++.|++.+|++|||.=+
T Consensus 47 ~e~~i~~~a~~mv~~Gl~~~Gy~yv~iDd~W~~~~rd~~G~-----~~~d~~rFP--~G~~~lad~iH~~GlkfGi 115 (386)
T PLN02808 47 NETLIKQTADAMVSSGLAALGYKYINLDDCWAELKRDSQGN-----LVPKASTFP--SGIKALADYVHSKGLKLGI 115 (386)
T ss_pred CHHHHHHHHHHHHHcchHHhCCEEEEEcCCcCCCCcCCCCC-----EeeChhhcC--ccHHHHHHHHHHCCCceEE
Confidence 45566666665 689999999873222111 11232 22332 332 4699999999999999766
No 316
>cd00384 ALAD_PBGS Porphobilinogen synthase (PBGS), which is also called delta-aminolevulinic acid dehydratase (ALAD), catalyzes the condensation of two 5-aminolevulinic acid (ALA) molecules to form the pyrrole porphobilinogen (PBG), which is the second step in the biosynthesis of tetrapyrroles, such as heme, vitamin B12 and chlorophyll. This reaction involves the formation of a Schiff base link between the substrate and the enzyme. PBGSs are metalloenzymes, some of which have a second, allosteric metal binding site, beside the metal ion binding site in their active site. Although PBGS is a family of homologous enzymes, its metal ion utilization at catalytic site varies between zinc and magnesium and/or potassium. PBGS can be classified into two groups based on differences in their active site metal binding site. They either contain a cysteine-rich zinc binding site (consensus DXCXCX(Y/F)X3G(H/Q)CG) or an aspartate-rich magnesium binding site (consensus DXALDX(Y/F)X3G(H/Q)DG). The cyste
Probab=40.74 E-value=1.4e+02 Score=27.95 Aligned_cols=81 Identities=12% Similarity=0.245 Sum_probs=53.5
Q ss_pred ceeEEEEeeCCCCCC--------c----hHHHHHHhhhHHHHcCCCEEEeCCCCCCCCCCCCCcccCCCcCCCCCCHHHH
Q 021281 25 REILFQGFNWESCKH--------D----WWRNLERKVPDISKSGFTSVWLPPATHSFAPEGYLPQNLYSLNSSYGSEHLL 92 (314)
Q Consensus 25 ~~~i~q~F~w~~~~~--------g----~~~gi~~~ldyl~~lG~~~I~l~Pi~~~~~~~gY~~~d~~~id~~~Gt~~df 92 (314)
++.||=+|.-+-.+. | ..+.+.+.+..+.++|+++|-|-|+-+.....|- .+.+|. | -+
T Consensus 21 ~dLI~PlFV~eg~~~~~~I~sMPG~~r~s~d~l~~~~~~~~~~Gi~~v~LFgv~~~Kd~~gs-----~A~~~~-g---~v 91 (314)
T cd00384 21 DDLIYPLFVVEGIDEKEEISSMPGVYRLSVDSLVEEAEELADLGIRAVILFGIPEHKDEIGS-----EAYDPD-G---IV 91 (314)
T ss_pred HHceeeEEEecCCCCccccCCCCCceeeCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCcc-----cccCCC-C---hH
Confidence 357888888654221 2 7899999999999999999999998433322231 122221 2 24
Q ss_pred HHHHHHHhhC--CCEEEEeeeecc
Q 021281 93 KALLHKMKQH--KVRAMADIVINH 114 (314)
Q Consensus 93 ~~lv~~ah~~--Gi~VilD~V~NH 114 (314)
.+-|+++++. .|-||-|+-+..
T Consensus 92 ~~air~iK~~~p~l~vi~DvcLc~ 115 (314)
T cd00384 92 QRAIRAIKEAVPELVVITDVCLCE 115 (314)
T ss_pred HHHHHHHHHhCCCcEEEEeeeccC
Confidence 4555555554 899999998763
No 317
>smart00636 Glyco_18 Glycosyl hydrolase family 18.
Probab=40.74 E-value=37 Score=31.66 Aligned_cols=46 Identities=20% Similarity=0.235 Sum_probs=34.2
Q ss_pred CCHHHHHHHHHHHHHHHHhCCCCEEEeccCCCCC--------HHHHHHHHHhhC
Q 021281 166 TQHFVRKDIIAWLRWLRNTVGFQDFRFDFARGYS--------AKYVKEYIEGAR 211 (314)
Q Consensus 166 ~~p~v~~~l~~~~~~w~~~~gvDGfRlDaa~~i~--------~~f~~~~~~~~~ 211 (314)
.++..|+.+++.+..+++++|.||+-+|--.-.. ..|++++.+.++
T Consensus 87 ~~~~~r~~fi~~i~~~~~~~~~DGidiDwE~~~~~~~d~~~~~~ll~~lr~~l~ 140 (334)
T smart00636 87 SDPASRKKFIDSIVSFLKKYGFDGIDIDWEYPGARGDDRENYTALLKELREALD 140 (334)
T ss_pred CCHHHHHHHHHHHHHHHHHcCCCeEEECCcCCCCCccHHHHHHHHHHHHHHHHH
Confidence 4588999999999999999999999999532211 246677666553
No 318
>TIGR02109 PQQ_syn_pqqE coenzyme PQQ biosynthesis protein E. This model describes coenzyme PQQ biosynthesis protein E, a gene required for the biosynthesis of pyrrolo-quinoline-quinone (coenzyme PQQ). PQQ is required for some glucose dehydrogenases and alcohol dehydrogenases.
Probab=40.51 E-value=52 Score=31.08 Aligned_cols=28 Identities=14% Similarity=0.114 Sum_probs=21.3
Q ss_pred CCHHHHHHHHHHHhhCCCEEEEeeeecc
Q 021281 87 GSEHLLKALLHKMKQHKVRAMADIVINH 114 (314)
Q Consensus 87 Gt~~df~~lv~~ah~~Gi~VilD~V~NH 114 (314)
|+-+...+.|+.+++.|++|.+-+|++.
T Consensus 129 g~f~~v~~~i~~l~~~g~~v~v~~vv~~ 156 (358)
T TIGR02109 129 NAFEQKLAMARAVKAAGLPLTLNFVIHR 156 (358)
T ss_pred cHHHHHHHHHHHHHhCCCceEEEEEecc
Confidence 4455666677888999999988888764
No 319
>COG1104 NifS Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes [Amino acid transport and metabolism]
Probab=40.49 E-value=53 Score=31.83 Aligned_cols=100 Identities=14% Similarity=0.209 Sum_probs=64.9
Q ss_pred cccchhhcccccccC----ccccCCceeEEEEeeCCCCCCchHHHHHHhhhHHHHcCCCEEEeCCCCCCCC---------
Q 021281 4 TSKGFDETNQQTDLG----AVIRNGREILFQGFNWESCKHDWWRNLERKVPDISKSGFTSVWLPPATHSFA--------- 70 (314)
Q Consensus 4 ~~~~~~~~~~~~~~~----~~~~~~~~~i~q~F~w~~~~~g~~~gi~~~ldyl~~lG~~~I~l~Pi~~~~~--------- 70 (314)
||-+.|.-|++..-+ +....|+-+|.-.=+. ..+.+.+.+|+..||..-||+|=-...-
T Consensus 67 TSG~TEsnNlaI~g~~~a~~~~~~~~HIIts~iEH--------~aVl~~~~~Le~~g~~Vtyl~V~~~G~v~~e~L~~al 138 (386)
T COG1104 67 TSGATESNNLAIKGAALAYRNAQKGKHIITSAIEH--------PAVLNTCRYLERQGFEVTYLPVDSNGLVDLEQLEEAL 138 (386)
T ss_pred ecCCcHHHHHHHHhhHHhhhcccCCCeEEEccccc--------HHHHHHHHHHHhcCCeEEEeCCCCCCeEcHHHHHHhc
Confidence 555555555544321 1122445566655553 5788888999888999999877432220
Q ss_pred CCCCCcccCCCcCCCCCCHHHHHHHHHHHhhCCCEEEEeee
Q 021281 71 PEGYLPQNLYSLNSSYGSEHLLKALLHKMKQHKVRAMADIV 111 (314)
Q Consensus 71 ~~gY~~~d~~~id~~~Gt~~df~~lv~~ah~~Gi~VilD~V 111 (314)
...=-...-..++..-|+.+.++++-+-|+++|+....|.|
T Consensus 139 ~~~T~LVSim~aNnE~G~IQpI~ei~~i~k~~~i~fHvDAv 179 (386)
T COG1104 139 RPDTILVSIMHANNETGTIQPIAEIGEICKERGILFHVDAV 179 (386)
T ss_pred CCCceEEEEEecccCeeecccHHHHHHHHHHcCCeEEEehh
Confidence 01111122234578899999999999999999999988887
No 320
>smart00733 Mterf Mitochondrial termination factor repeats. Human mitochondrial termination factor is a DNA-binding protein that acts as a transcription termination factor. Six repeats occur in human mTERF, that also are present in numerous plant proteins.
Probab=40.42 E-value=24 Score=19.68 Aligned_cols=17 Identities=29% Similarity=0.436 Sum_probs=14.9
Q ss_pred HHHHHHhhhHHHHcCCC
Q 021281 42 WRNLERKVPDISKSGFT 58 (314)
Q Consensus 42 ~~gi~~~ldyl~~lG~~ 58 (314)
-+.+..+++||+++|++
T Consensus 15 ~~~l~~~~~~l~~~g~~ 31 (31)
T smart00733 15 EKKLKPKVEFLKELGFS 31 (31)
T ss_pred HHHhhHHHHHHHHcCCC
Confidence 57888999999999984
No 321
>cd02879 GH18_plant_chitinase_class_V The class V plant chitinases have a glycosyl hydrolase family 18 (GH18) domain, but lack the chitin-binding domain present in other GH18 enzymes. The GH18 domain of the class V chitinases has endochitinase activity in some cases and no catalytic activity in others. Included in this family is a lectin found in black locust (Robinia pseudoacacia) bark, which binds chitin but lacks chitinase activity. Also included is a chitinase-related receptor-like kinase (CHRK1) from tobacco (Nicotiana tabacum), with an N-terminal GH18 domain and a C-terminal kinase domain, which is thought to be part of a plant signaling pathway. The GH18 domain of CHRK1 is expressed extracellularly where it binds chitin but lacks chitinase activity.
Probab=40.29 E-value=34 Score=31.70 Aligned_cols=46 Identities=20% Similarity=0.278 Sum_probs=34.9
Q ss_pred CCHHHHHHHHHHHHHHHHhCCCCEEEeccCCCCC-------HHHHHHHHHhhC
Q 021281 166 TQHFVRKDIIAWLRWLRNTVGFQDFRFDFARGYS-------AKYVKEYIEGAR 211 (314)
Q Consensus 166 ~~p~v~~~l~~~~~~w~~~~gvDGfRlDaa~~i~-------~~f~~~~~~~~~ 211 (314)
.++..|+.+++.+..+++++|+||+-+|==.-.. ..|+++++++++
T Consensus 88 ~~~~~R~~fi~siv~~l~~~~fDGidiDWE~P~~~~d~~n~~~ll~elr~~l~ 140 (299)
T cd02879 88 SDPTARKAFINSSIKVARKYGFDGLDLDWEFPSSQVEMENFGKLLEEWRAAVK 140 (299)
T ss_pred CCHHHHHHHHHHHHHHHHHhCCCceeecccCCCChhHHHHHHHHHHHHHHHHH
Confidence 4688999999999999999999999999432211 246777776654
No 322
>PRK06582 coproporphyrinogen III oxidase; Provisional
Probab=40.21 E-value=69 Score=30.98 Aligned_cols=63 Identities=13% Similarity=0.061 Sum_probs=41.6
Q ss_pred HhhhHHHHcCCCEEEeCCCCCCCCCCCCCcccCCCcCCCCCCHHHHHHHHHHHhhCCCEEEEeeeeccccC
Q 021281 47 RKVPDISKSGFTSVWLPPATHSFAPEGYLPQNLYSLNSSYGSEHLLKALLHKMKQHKVRAMADIVINHRVG 117 (314)
Q Consensus 47 ~~ldyl~~lG~~~I~l~Pi~~~~~~~gY~~~d~~~id~~~Gt~~df~~lv~~ah~~Gi~VilD~V~NH~~~ 117 (314)
++|..|+++||+.|.|.. ++. +..-+..+ .|.-+.++..+.++.|++.+..|-+|++++.-+.
T Consensus 112 e~l~~l~~~GvnRiSiGv--QS~-----~d~~L~~l-gR~h~~~~~~~ai~~~~~~~~~v~~DlI~GlPgq 174 (390)
T PRK06582 112 EKFKAFKLAGINRVSIGV--QSL-----KEDDLKKL-GRTHDCMQAIKTIEAANTIFPRVSFDLIYARSGQ 174 (390)
T ss_pred HHHHHHHHCCCCEEEEEC--CcC-----CHHHHHHc-CCCCCHHHHHHHHHHHHHhCCcEEEEeecCCCCC
Confidence 566677777777776653 111 11111222 3445688888899999999999999999986554
No 323
>PLN03231 putative alpha-galactosidase; Provisional
Probab=40.18 E-value=3.5e+02 Score=26.03 Aligned_cols=34 Identities=9% Similarity=0.015 Sum_probs=30.3
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHhCCCCEEEeccCC
Q 021281 162 NIDHTQHFVRKDIIAWLRWLRNTVGFQDFRFDFAR 196 (314)
Q Consensus 162 dln~~~p~v~~~l~~~~~~w~~~~gvDGfRlDaa~ 196 (314)
.+|..++..++|....++.+. +-|||=+.+|...
T Consensus 153 ~v~~~~~gaq~y~~~~a~~fA-~WGVDylK~D~c~ 186 (357)
T PLN03231 153 GVNTSSEGGKLFIQSLYDQYA-SWGIDFIKHDCVF 186 (357)
T ss_pred cccccchhHHHHHHHHHHHHH-HhCCCEEeecccC
Confidence 578889999999999999997 9999999999753
No 324
>cd03412 CbiK_N Anaerobic cobalamin biosynthetic cobalt chelatase (CbiK), N-terminal domain. CbiK is part of the cobalt-early path for cobalamin biosynthesis. It catalyzes the insertion of cobalt into the oxidized form of precorrin-2, factor II (sirohydrochlorin), the second step of the anaerobic branch of vitamin B12 biosynthesis. CbiK belongs to the class II family of chelatases and is a homomeric enzyme that does not require ATP for its enzymatic activity.
Probab=40.08 E-value=44 Score=26.81 Aligned_cols=60 Identities=13% Similarity=0.111 Sum_probs=39.5
Q ss_pred HHHHHHhhhHHHHcCCCEEEeCCCCCCCCCC---------CCC-cccCCCcC-CCCCCHHHHHHHHHHHhh
Q 021281 42 WRNLERKVPDISKSGFTSVWLPPATHSFAPE---------GYL-PQNLYSLN-SSYGSEHLLKALLHKMKQ 101 (314)
Q Consensus 42 ~~gi~~~ldyl~~lG~~~I~l~Pi~~~~~~~---------gY~-~~d~~~id-~~~Gt~~df~~lv~~ah~ 101 (314)
...+.+.|+.|.+.|++.|.+.|.+-.++-+ .|. +..-..+. |-+.+.+|..++++++++
T Consensus 55 ~p~~~eaL~~l~~~G~~~V~V~Pl~l~~G~e~~di~~~v~~~~~~~~~i~~g~pLl~~~~d~~~v~~al~~ 125 (127)
T cd03412 55 VDTPEEALAKLAADGYTEVIVQSLHIIPGEEYEKLKREVDAFKKGFKKIKLGRPLLYSPEDYEEVAAALKD 125 (127)
T ss_pred CCCHHHHHHHHHHCCCCEEEEEeCeeECcHHHHHHHHHHHHHhCCCceEEEccCCCCCHHHHHHHHHHHHh
Confidence 4678899999999999999999998665211 111 11111223 445567788888877654
No 325
>PRK10060 RNase II stability modulator; Provisional
Probab=40.07 E-value=34 Score=35.43 Aligned_cols=85 Identities=13% Similarity=0.071 Sum_probs=54.9
Q ss_pred eeEEEEeeCCCCCCchHHHHHHhhhHHHHcCCCEEEeCCCCCCC---CCCCCCcccCCCcCCCC--------CCHHHHHH
Q 021281 26 EILFQGFNWESCKHDWWRNLERKVPDISKSGFTSVWLPPATHSF---APEGYLPQNLYSLNSSY--------GSEHLLKA 94 (314)
Q Consensus 26 ~~i~q~F~w~~~~~g~~~gi~~~ldyl~~lG~~~I~l~Pi~~~~---~~~gY~~~d~~~id~~~--------Gt~~df~~ 94 (314)
.+++++-+-.... +.+.+.+.+..|+++||.-.. -=+-... ++-.--+.|+-+||..| ....-++.
T Consensus 526 ~l~lEitE~~~~~--~~~~~~~~l~~L~~~G~~ial-DdfGtg~ssl~~L~~l~~d~iKiD~sfv~~i~~~~~~~~~v~~ 602 (663)
T PRK10060 526 PIDVELTESCLIE--NEELALSVIQQFSQLGAQVHL-DDFGTGYSSLSQLARFPIDAIKLDQSFVRDIHKQPVSQSLVRA 602 (663)
T ss_pred eEEEEECCchhhc--CHHHHHHHHHHHHHCCCEEEE-ECCCCchhhHHHHHhCCCCEEEECHHHHhccccCcchHHHHHH
Confidence 5677776643222 478889999999999995433 1110000 01112256777787443 33456899
Q ss_pred HHHHHhhCCCEEEEeeeec
Q 021281 95 LLHKMKQHKVRAMADIVIN 113 (314)
Q Consensus 95 lv~~ah~~Gi~VilD~V~N 113 (314)
++.-||+.||+||.+.|=+
T Consensus 603 ii~~a~~lg~~viAeGVEt 621 (663)
T PRK10060 603 IVAVAQALNLQVIAEGVET 621 (663)
T ss_pred HHHHHHHCCCcEEEecCCC
Confidence 9999999999999987644
No 326
>COG2342 Predicted extracellular endo alpha-1,4 polygalactosaminidase or related polysaccharide hydrolase [Carbohydrate transport and metabolism]
Probab=40.01 E-value=34 Score=31.60 Aligned_cols=75 Identities=12% Similarity=0.148 Sum_probs=43.3
Q ss_pred cCCceeEEEEeeCCCCCCchHHHHHHhhhHHHHcCCCEEEeCCCCCCCCCCCCCcccCCCcCCCCCC------HHHHHHH
Q 021281 22 RNGREILFQGFNWESCKHDWWRNLERKVPDISKSGFTSVWLPPATHSFAPEGYLPQNLYSLNSSYGS------EHLLKAL 95 (314)
Q Consensus 22 ~~~~~~i~q~F~w~~~~~g~~~gi~~~ldyl~~lG~~~I~l~Pi~~~~~~~gY~~~d~~~id~~~Gt------~~df~~l 95 (314)
|+| .-.+..++-. |-+.+.+.|+.|.++||++|+|==|= ..-|. ..+...+...-. ...++++
T Consensus 111 W~G-ny~VkYW~~e-----Wkdii~~~l~rL~d~GfdGvyLD~VD----~y~Y~-~~~~~~~~~~~~k~m~~~i~~i~~~ 179 (300)
T COG2342 111 WPG-NYAVKYWEPE-----WKDIIRSYLDRLIDQGFDGVYLDVVD----AYWYV-EWNDRETGVNAAKKMVKFIAAIAEY 179 (300)
T ss_pred CCC-CceeeccCHH-----HHHHHHHHHHHHHHccCceEEEeeec----hHHHH-HHhcccccccHHHHHHHHHHHHHHH
Confidence 555 3444444434 66778899999999999999985431 11121 112223322222 1346666
Q ss_pred HHHHhhCCCEEEE
Q 021281 96 LHKMKQHKVRAMA 108 (314)
Q Consensus 96 v~~ah~~Gi~Vil 108 (314)
++++|-. +.||.
T Consensus 180 ~ra~~~~-~~Vi~ 191 (300)
T COG2342 180 ARAANPL-FRVIP 191 (300)
T ss_pred HHhcCCc-EEEEe
Confidence 6777666 66665
No 327
>PRK09057 coproporphyrinogen III oxidase; Provisional
Probab=39.97 E-value=51 Score=31.69 Aligned_cols=63 Identities=14% Similarity=0.063 Sum_probs=39.5
Q ss_pred HhhhHHHHcCCCEEEeCCCCCCCCCCCCCcccCCCcCCCCCCHHHHHHHHHHHhhCCCEEEEeeeeccccC
Q 021281 47 RKVPDISKSGFTSVWLPPATHSFAPEGYLPQNLYSLNSSYGSEHLLKALLHKMKQHKVRAMADIVINHRVG 117 (314)
Q Consensus 47 ~~ldyl~~lG~~~I~l~Pi~~~~~~~gY~~~d~~~id~~~Gt~~df~~lv~~ah~~Gi~VilD~V~NH~~~ 117 (314)
++|..|+++||+.|.|.- ++. +..-...+ .+--+.++..+.++.+++.++.|-+|+.++--+.
T Consensus 105 e~L~~l~~~GvnrislGv--QS~-----~d~vL~~l-~R~~~~~~~~~ai~~~~~~~~~v~~dli~GlPgq 167 (380)
T PRK09057 105 GRFRGYRAAGVNRVSLGV--QAL-----NDADLRFL-GRLHSVAEALAAIDLAREIFPRVSFDLIYARPGQ 167 (380)
T ss_pred HHHHHHHHcCCCEEEEec--ccC-----CHHHHHHc-CCCCCHHHHHHHHHHHHHhCccEEEEeecCCCCC
Confidence 555566666666665542 111 11101222 2344788899999999999999999999885443
No 328
>PRK13384 delta-aminolevulinic acid dehydratase; Provisional
Probab=39.95 E-value=1.4e+02 Score=28.07 Aligned_cols=81 Identities=15% Similarity=0.191 Sum_probs=53.5
Q ss_pred ceeEEEEeeCCCCCC--------c----hHHHHHHhhhHHHHcCCCEEEeCCCCCCCCCCCCCcccCCCcCCCCCCHHHH
Q 021281 25 REILFQGFNWESCKH--------D----WWRNLERKVPDISKSGFTSVWLPPATHSFAPEGYLPQNLYSLNSSYGSEHLL 92 (314)
Q Consensus 25 ~~~i~q~F~w~~~~~--------g----~~~gi~~~ldyl~~lG~~~I~l~Pi~~~~~~~gY~~~d~~~id~~~Gt~~df 92 (314)
++.||=+|.-+-.+. | ..+.+.+.+..+.++|+++|-|-|+-+.....|- .+.+| ..-+
T Consensus 31 ~dLI~PlFV~eg~~~~~~I~smPg~~r~sid~l~~~~~~~~~~Gi~~v~lFgv~~~Kd~~gs-----~A~~~----~g~v 101 (322)
T PRK13384 31 SDLIYPIFIEEHITDAVPISTLPGISRLPESALADEIERLYALGIRYVMPFGISHHKDAKGS-----DTWDD----NGLL 101 (322)
T ss_pred HHceeeEEEecCCCCceecCCCCCcceECHHHHHHHHHHHHHcCCCEEEEeCCCCCCCCCcc-----cccCC----CChH
Confidence 356888888653321 2 7899999999999999999999998433222221 11221 1224
Q ss_pred HHHHHHHhhC--CCEEEEeeeecc
Q 021281 93 KALLHKMKQH--KVRAMADIVINH 114 (314)
Q Consensus 93 ~~lv~~ah~~--Gi~VilD~V~NH 114 (314)
.+-|+++++. .|-||.|+-+-.
T Consensus 102 ~~air~iK~~~pdl~vi~DVcLc~ 125 (322)
T PRK13384 102 ARMVRTIKAAVPEMMVIPDICFCE 125 (322)
T ss_pred HHHHHHHHHHCCCeEEEeeeeccc
Confidence 4555555554 899999997763
No 329
>cd06452 SepCysS Sep-tRNA:Cys-tRNA synthase. This family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Cys-tRNA(Cys) is produced by O-phosphoseryl-tRNA synthetase which ligates O-phosphoserine (Sep) to tRNA(Cys), and Sep-tRNA:Cys-tRNA synthase (SepCysS) converts Sep-tRNA(Cys) to Cys-tRNA(Cys), in methanogenic archaea. SepCysS forms a dimer, each monomer is composed of a large and small domain; the larger, a typical pyridoxal 5'-phosphate (PLP)-dependent-like enzyme fold. In the active site of each monomer, PLP is covalently bound to a conserved Lys residue near the dimer interface.
Probab=39.88 E-value=24 Score=33.20 Aligned_cols=31 Identities=16% Similarity=0.203 Sum_probs=27.3
Q ss_pred CCCCCCHHHHHHHHHHHhhCCCEEEEeeeec
Q 021281 83 NSSYGSEHLLKALLHKMKQHKVRAMADIVIN 113 (314)
Q Consensus 83 d~~~Gt~~df~~lv~~ah~~Gi~VilD~V~N 113 (314)
+...|+..+++++++.||++|+.||+|-+.-
T Consensus 149 ~n~tG~~~~~~~i~~~~~~~~~~vivD~a~~ 179 (361)
T cd06452 149 DGNYGNLHDAKKIAKVCHEYGVPLLLNGAYT 179 (361)
T ss_pred CCCCeeeccHHHHHHHHHHcCCeEEEECCcc
Confidence 3457888999999999999999999999865
No 330
>PRK13111 trpA tryptophan synthase subunit alpha; Provisional
Probab=39.85 E-value=74 Score=29.00 Aligned_cols=48 Identities=17% Similarity=0.274 Sum_probs=35.4
Q ss_pred HHHHhhhHHHHcCCCEEEeCCCCCCCCCCCCCcccCCCcCCCCCCHHHHHHHHHHHhhCCCEEEEeeeec
Q 021281 44 NLERKVPDISKSGFTSVWLPPATHSFAPEGYLPQNLYSLNSSYGSEHLLKALLHKMKQHKVRAMADIVIN 113 (314)
Q Consensus 44 gi~~~ldyl~~lG~~~I~l~Pi~~~~~~~gY~~~d~~~id~~~Gt~~df~~lv~~ah~~Gi~VilD~V~N 113 (314)
|+++-++.+++.|+++|.++ | + ..++.++++++|.++||..|+=+.++
T Consensus 105 G~e~f~~~~~~aGvdGviip--------------D-------L-p~ee~~~~~~~~~~~gl~~I~lvap~ 152 (258)
T PRK13111 105 GVERFAADAAEAGVDGLIIP--------------D-------L-PPEEAEELRAAAKKHGLDLIFLVAPT 152 (258)
T ss_pred CHHHHHHHHHHcCCcEEEEC--------------C-------C-CHHHHHHHHHHHHHcCCcEEEEeCCC
Confidence 66667777777777777764 1 1 24789999999999999999644444
No 331
>PRK07050 cystathionine beta-lyase; Provisional
Probab=39.80 E-value=38 Score=32.69 Aligned_cols=30 Identities=10% Similarity=-0.066 Sum_probs=26.7
Q ss_pred CCCCHHHHHHHHHHHhhCCCEEEEeeeecc
Q 021281 85 SYGSEHLLKALLHKMKQHKVRAMADIVINH 114 (314)
Q Consensus 85 ~~Gt~~df~~lv~~ah~~Gi~VilD~V~NH 114 (314)
..|...+++++++.||++|+.||+|-.+..
T Consensus 162 p~~~~~di~~I~~ia~~~gi~livD~a~a~ 191 (394)
T PRK07050 162 VTMEVPDVPAITAAARARGVVTAIDNTYSA 191 (394)
T ss_pred CCccHhhHHHHHHHHHHcCCEEEEECCccc
Confidence 357899999999999999999999998654
No 332
>cd06454 KBL_like KBL_like; this family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD corresponds to serine palmitoyltransferase (SPT), 5-aminolevulinate synthase (ALAS), 8-amino-7-oxononanoate synthase (AONS), and 2-amino-3-ketobutyrate CoA ligase (KBL). SPT is responsible for the condensation of L-serine with palmitoyl-CoA to produce 3-ketodihydrospingosine, the reaction of the first step in sphingolipid biosynthesis. ALAS is involved in heme biosynthesis; it catalyzes the synthesis of 5-aminolevulinic acid from glycine and succinyl-coenzyme A. AONS catalyses the decarboxylative condensation of l-alanine and pimeloyl-CoA in the first committed step of biotin biosynthesis. KBL catalyzes the second reaction step of the metabolic degradation pathway for threonine converting 2-amino-3-ketobutyrate, to glycine and acetyl-CoA. The members of this CD are widely found in all three forms of life.
Probab=39.71 E-value=26 Score=32.38 Aligned_cols=28 Identities=18% Similarity=0.043 Sum_probs=24.3
Q ss_pred CCCCHHHHHHHHHHHhhCCCEEEEeeee
Q 021281 85 SYGSEHLLKALLHKMKQHKVRAMADIVI 112 (314)
Q Consensus 85 ~~Gt~~df~~lv~~ah~~Gi~VilD~V~ 112 (314)
.-|...+++++++.||++|+.||+|-+.
T Consensus 144 ~tG~~~~~~~i~~~~~~~~~~livD~a~ 171 (349)
T cd06454 144 MDGDIAPLPELVDLAKKYGAILFVDEAH 171 (349)
T ss_pred CCCCccCHHHHHHHHHHcCCEEEEEccc
Confidence 3466677899999999999999999984
No 333
>cd00408 DHDPS-like Dihydrodipicolinate synthase family. A member of the class I aldolases, which use an active-site lysine which stablilzes a reaction intermediate via Schiff base formation, and have TIM beta/alpha barrel fold. The dihydrodipicolinate synthase family comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways and includes such proteins as N-acetylneuraminate lyase, MosA protein, 5-keto-4-deoxy-glucarate dehydratase, trans-o-hydroxybenzylidenepyruvate hydratase-aldolase, trans-2'-carboxybenzalpyruvate hydratase-aldolase, and 2-keto-3-deoxy- gluconate aldolase. The family is also referred to as the N-acetylneuraminate lyase (NAL) family.
Probab=39.67 E-value=80 Score=28.64 Aligned_cols=26 Identities=15% Similarity=0.104 Sum_probs=23.2
Q ss_pred hHHHHHHhhhHHHHcCCCEEEeCCCC
Q 021281 41 WWRNLERKVPDISKSGFTSVWLPPAT 66 (314)
Q Consensus 41 ~~~gi~~~ldyl~~lG~~~I~l~Pi~ 66 (314)
+.+...+...+.+++|+++|.++|++
T Consensus 77 ~~~~~i~~a~~a~~~Gad~v~v~pP~ 102 (281)
T cd00408 77 STREAIELARHAEEAGADGVLVVPPY 102 (281)
T ss_pred cHHHHHHHHHHHHHcCCCEEEECCCc
Confidence 47788899999999999999999975
No 334
>PRK14457 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=39.59 E-value=1.3e+02 Score=28.66 Aligned_cols=72 Identities=15% Similarity=0.064 Sum_probs=46.4
Q ss_pred CceeEEEEeeCCCCCCchHHHHHHhhhHHHHcCCCEEEeCCCCCCCCCCCCCcccCCCcCCCCCCHHHHHHHHHHHhhCC
Q 021281 24 GREILFQGFNWESCKHDWWRNLERKVPDISKSGFTSVWLPPATHSFAPEGYLPQNLYSLNSSYGSEHLLKALLHKMKQHK 103 (314)
Q Consensus 24 ~~~~i~q~F~w~~~~~g~~~gi~~~ldyl~~lG~~~I~l~Pi~~~~~~~gY~~~d~~~id~~~Gt~~df~~lv~~ah~~G 103 (314)
|..|.+..-.=.-.++ +-+.+.+-.+.|+.+++ .|-|.|.++.+ ..+|.+ =+.++++++.+.++++|
T Consensus 253 gr~I~iey~LIpGvND-s~e~a~~La~~l~~l~~-~VnLIPynp~~-~~~~~~----------ps~e~i~~f~~~L~~~G 319 (345)
T PRK14457 253 GRRVSFEYILLGGVND-LPEHAEELANLLRGFQS-HVNLIPYNPID-EVEFQR----------PSPKRIQAFQRVLEQRG 319 (345)
T ss_pred CCEEEEEEEEECCcCC-CHHHHHHHHHHHhcCCC-eEEEecCCCCC-CCCCCC----------CCHHHHHHHHHHHHHCC
Confidence 4456555544221112 35666666677777776 78999987653 223321 14788999999999999
Q ss_pred CEEEE
Q 021281 104 VRAMA 108 (314)
Q Consensus 104 i~Vil 108 (314)
+.|.+
T Consensus 320 i~vtv 324 (345)
T PRK14457 320 VAVSV 324 (345)
T ss_pred CeEEE
Confidence 99975
No 335
>PRK11829 biofilm formation regulator HmsP; Provisional
Probab=39.36 E-value=45 Score=34.19 Aligned_cols=86 Identities=16% Similarity=0.182 Sum_probs=55.4
Q ss_pred ceeEEEEeeCCCCCCchHHHHHHhhhHHHHcCCCEEEeCCCCCCCC---CCCC---CcccCCCcCCCC-----CCHHHHH
Q 021281 25 REILFQGFNWESCKHDWWRNLERKVPDISKSGFTSVWLPPATHSFA---PEGY---LPQNLYSLNSSY-----GSEHLLK 93 (314)
Q Consensus 25 ~~~i~q~F~w~~~~~g~~~gi~~~ldyl~~lG~~~I~l~Pi~~~~~---~~gY---~~~d~~~id~~~-----Gt~~df~ 93 (314)
+.+++++=+-... .+.+.+.+.+..|+++||. |.|-=+-...+ +-.- -+.|+-+||..| ++..-++
T Consensus 523 ~~l~lEi~E~~~~--~~~~~~~~~~~~l~~~G~~-ialDdfG~g~ss~~~L~~~~~l~~d~iKid~~~~~~~~~~~~~~~ 599 (660)
T PRK11829 523 QQLLLEITETAQI--QDLDEALRLLRELQGLGLL-IALDDFGIGYSSLRYLNHLKSLPIHMIKLDKSFVKNLPEDDAIAR 599 (660)
T ss_pred hhEEEEEcCchhh--cCHHHHHHHHHHHHhCCCE-EEEECCCCchhhHHHHhccCCCCCcEEEECHHHHhcccCCHHHHH
Confidence 3577777664322 2578889999999999997 44422211111 1122 456677777443 3445677
Q ss_pred HHHHHHhhCCCEEEEeeeec
Q 021281 94 ALLHKMKQHKVRAMADIVIN 113 (314)
Q Consensus 94 ~lv~~ah~~Gi~VilD~V~N 113 (314)
.++.-||..|++||...|=+
T Consensus 600 ~i~~~a~~l~~~viaegVEt 619 (660)
T PRK11829 600 IISCVSDVLKVRVMAEGVET 619 (660)
T ss_pred HHHHHHHHcCCeEEEecCCC
Confidence 88888999999999977644
No 336
>cd05013 SIS_RpiR RpiR-like protein. RpiR contains a SIS (Sugar ISomerase) domain, which is found in many phosphosugar isomerases and phosphosugar binding proteins. In E. coli, rpiR negatively regulates the expression of rpiB gene. Both rpiB and rpiA are ribose phosphate isomerases that catalyze the reversible reactions of ribose 5-phosphate into ribulose 5-phosphate.
Probab=39.36 E-value=65 Score=25.04 Aligned_cols=77 Identities=14% Similarity=0.062 Sum_probs=44.7
Q ss_pred eeEEEEeeCCCCCCchHHHHHHhhhHHHHcCCCEEEeCCCCCCCCC-CCCCcccCCCcCCCCCCHHHHHHHHHHHhhCCC
Q 021281 26 EILFQGFNWESCKHDWWRNLERKVPDISKSGFTSVWLPPATHSFAP-EGYLPQNLYSLNSSYGSEHLLKALLHKMKQHKV 104 (314)
Q Consensus 26 ~~i~q~F~w~~~~~g~~~gi~~~ldyl~~lG~~~I~l~Pi~~~~~~-~gY~~~d~~~id~~~Gt~~df~~lv~~ah~~Gi 104 (314)
.+++-+.... ..-...-...++.+|.....+......... ..-...|..-+=..-|..++..++++.|+++|+
T Consensus 15 ~i~i~g~g~s------~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iS~~g~~~~~~~~~~~a~~~g~ 88 (139)
T cd05013 15 RIYIFGVGSS------GLVAEYLAYKLLRLGKPVVLLSDPHLQLMSAANLTPGDVVIAISFSGETKETVEAAEIAKERGA 88 (139)
T ss_pred EEEEEEcCch------HHHHHHHHHHHHHcCCceEEecCHHHHHHHHHcCCCCCEEEEEeCCCCCHHHHHHHHHHHHcCC
Confidence 4555544433 334444445678888866665433211100 011223333334666777889999999999999
Q ss_pred EEEE
Q 021281 105 RAMA 108 (314)
Q Consensus 105 ~Vil 108 (314)
++++
T Consensus 89 ~iv~ 92 (139)
T cd05013 89 KVIA 92 (139)
T ss_pred eEEE
Confidence 9977
No 337
>PRK05367 glycine dehydrogenase; Provisional
Probab=39.23 E-value=49 Score=36.04 Aligned_cols=80 Identities=10% Similarity=0.030 Sum_probs=49.8
Q ss_pred ceeEEEEeeCCCCCCchHHHHHHhhhHHHHcCCCEEEeCCCCCCCCCCCCCcccCCCcCCCCCCHHHHHHHHHHHhhCCC
Q 021281 25 REILFQGFNWESCKHDWWRNLERKVPDISKSGFTSVWLPPATHSFAPEGYLPQNLYSLNSSYGSEHLLKALLHKMKQHKV 104 (314)
Q Consensus 25 ~~~i~q~F~w~~~~~g~~~gi~~~ldyl~~lG~~~I~l~Pi~~~~~~~gY~~~d~~~id~~~Gt~~df~~lv~~ah~~Gi 104 (314)
++|++---... ..+.-...+.+..|+..+.+.+--. ......... ..++-..+|..++++++++.||++|.
T Consensus 166 ~~vlv~~~~hP-------~~~~v~~t~a~~~G~ev~~~~~~~d-~~~~~~~~v-lvq~p~~~G~i~d~~~i~~~ah~~Ga 236 (954)
T PRK05367 166 NRFFVDDDVHP-------QTLDVLRTRAEPLGIEVVVGDAAKA-LDHDDVFGV-LLQYPGTSGEVRDYTALIAAAHARGA 236 (954)
T ss_pred CEEEEcCccCH-------HHHHHHHHHHHhCCCEEEEecCccC-CCcccEEEE-EEecCCCCeeeccHHHHHHHHHHcCC
Confidence 56766544433 2233333566789999888864221 111111111 22334677888999999999999999
Q ss_pred EEEEeeeec
Q 021281 105 RAMADIVIN 113 (314)
Q Consensus 105 ~VilD~V~N 113 (314)
-+++|..++
T Consensus 237 l~~vda~~~ 245 (954)
T PRK05367 237 LVAVAADLL 245 (954)
T ss_pred EEEEEehhh
Confidence 999987543
No 338
>cd04824 eu_ALAD_PBGS_cysteine_rich Porphobilinogen synthase (PBGS), which is also called delta-aminolevulinic acid dehydratase (ALAD), catalyzes the condensation of two 5-aminolevulinic acid (ALA) molecules to form the pyrrole porphobilinogen (PBG), which is the second step in the biosynthesis of tetrapyrroles, such as heme, vitamin B12 and chlorophyll. This reaction involves the formation of a Schiff base link between the substrate and the enzyme. PBGSs are metalloenzymes, some of which have a second, allosteric metal binding site, beside the metal ion binding site in their active site. Although PBGS is a family of homologous enzymes, its metal ion utilization at catalytic site varies between zinc and magnesium and/or potassium. PBGS can be classified into two groups based on differences in their active site metal binding site. The eukaryotic PBGSs represented by this model, which contain a cysteine-rich zinc binding motif (DXCXCX(Y/F)X3G(H/Q)CG), require zinc for their activity, they
Probab=39.22 E-value=1.2e+02 Score=28.50 Aligned_cols=81 Identities=11% Similarity=0.131 Sum_probs=52.5
Q ss_pred ceeEEEEeeCCCCCC--------c----hHHHHHHhhhHHHHcCCCEEEeCCCCCC--CCCC-CCCcccCCCcCCCCCCH
Q 021281 25 REILFQGFNWESCKH--------D----WWRNLERKVPDISKSGFTSVWLPPATHS--FAPE-GYLPQNLYSLNSSYGSE 89 (314)
Q Consensus 25 ~~~i~q~F~w~~~~~--------g----~~~gi~~~ldyl~~lG~~~I~l~Pi~~~--~~~~-gY~~~d~~~id~~~Gt~ 89 (314)
++.||=+|.-+-.+. | ..+.+.+.+..+.++|+++|-|-|+-+. .... |-. +.+| .
T Consensus 21 ~dlI~PlFV~eg~~~~~~I~smPG~~r~s~d~l~~~~~~~~~~Gi~~v~LFgv~~~~~Kd~~~gs~-----a~~~----~ 91 (320)
T cd04824 21 SNLIYPIFITDNPDAKQPIDSLPGINRYGVNRLEEFLRPLVAKGLRSVILFGVPLKPGKDDRSGSA-----ADDE----D 91 (320)
T ss_pred HHceeeEEEecCCCCccccCCCCCceeeCHHHHHHHHHHHHHCCCCEEEEeCCCccccCCcCcccc-----ccCC----C
Confidence 357888888643321 2 7899999999999999999999998422 1111 211 1111 1
Q ss_pred HHHHHHHHHHhhC--CCEEEEeeeecc
Q 021281 90 HLLKALLHKMKQH--KVRAMADIVINH 114 (314)
Q Consensus 90 ~df~~lv~~ah~~--Gi~VilD~V~NH 114 (314)
--+.+.|+++++. .|-||-|+-+-.
T Consensus 92 g~v~~air~iK~~~pdl~vi~Dvclc~ 118 (320)
T cd04824 92 GPVIQAIKLIREEFPELLIACDVCLCE 118 (320)
T ss_pred ChHHHHHHHHHHhCCCcEEEEeeeccC
Confidence 2244555555554 899999998763
No 339
>cd07944 DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase-like, N-terminal catalytic TIM barrel domain. This family of bacterial enzymes is sequence-similar to 4-hydroxy-2-oxovalerate aldolase (HOA) but its exact function is unknown. This family includes the Bacteroides vulgatus Bvu_2661 protein and belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues t
Probab=39.16 E-value=3e+02 Score=25.01 Aligned_cols=70 Identities=11% Similarity=0.115 Sum_probs=49.4
Q ss_pred CHHHHHHHHHHHhhCCCEEEEeeeeccccCCCCCCCCcCcCCCCCCCCCCCCCcccCCCCCccccCCCCCCCCCCCCCCC
Q 021281 88 SEHLLKALLHKMKQHKVRAMADIVINHRVGTTQGHGGKYNRYDGIPLSWDEHAVTSCTGGLGNGSTGDNFHGVPNIDHTQ 167 (314)
Q Consensus 88 t~~df~~lv~~ah~~Gi~VilD~V~NH~~~~~~~~~~~y~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~~ 167 (314)
..+..+++|+.++++|++|.+-+.--+. +
T Consensus 107 ~~~~~~~~i~~ak~~G~~v~~~~~~a~~-------------------------------------------------~-- 135 (266)
T cd07944 107 EFDEALPLIKAIKEKGYEVFFNLMAISG-------------------------------------------------Y-- 135 (266)
T ss_pred cHHHHHHHHHHHHHCCCeEEEEEEeecC-------------------------------------------------C--
Confidence 5788999999999999998874432110 0
Q ss_pred HHHHHHHHHHHHHHHHhCCCCEEEe-ccCCCCCHHHHHHHHHhhC
Q 021281 168 HFVRKDIIAWLRWLRNTVGFQDFRF-DFARGYSAKYVKEYIEGAR 211 (314)
Q Consensus 168 p~v~~~l~~~~~~w~~~~gvDGfRl-Daa~~i~~~f~~~~~~~~~ 211 (314)
-.+++.+.++... +.|+|.+++ |.+-...++-..+++..++
T Consensus 136 --~~~~~~~~~~~~~-~~g~~~i~l~DT~G~~~P~~v~~lv~~l~ 177 (266)
T cd07944 136 --SDEELLELLELVN-EIKPDVFYIVDSFGSMYPEDIKRIISLLR 177 (266)
T ss_pred --CHHHHHHHHHHHH-hCCCCEEEEecCCCCCCHHHHHHHHHHHH
Confidence 1235566666665 789999987 7777777877777776654
No 340
>cd00950 DHDPS Dihydrodipicolinate synthase (DHDPS) is a key enzyme in lysine biosynthesis. It catalyzes the aldol condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a Schiff base formation between pyruvate and a lysine residue. The functional enzyme is a homotetramer consisting of a dimer of dimers. DHDPS is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways.
Probab=39.05 E-value=66 Score=29.35 Aligned_cols=81 Identities=12% Similarity=0.031 Sum_probs=47.4
Q ss_pred ccchhhcccccccCccccCCc-eeEEEEeeCCCCCCchHHHHHHhhhHHHHcCCCEEEeCCCCCCCCCCCCCcccCCCcC
Q 021281 5 SKGFDETNQQTDLGAVIRNGR-EILFQGFNWESCKHDWWRNLERKVPDISKSGFTSVWLPPATHSFAPEGYLPQNLYSLN 83 (314)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~-~~i~q~F~w~~~~~g~~~gi~~~ldyl~~lG~~~I~l~Pi~~~~~~~gY~~~d~~~id 83 (314)
++|.+|-..-....-....++ .+|.++-.- +.+...+.+.+.+++|+++|.++|++ | +..
T Consensus 49 ~lt~~Er~~l~~~~~~~~~~~~~vi~gv~~~------~~~~~~~~a~~a~~~G~d~v~~~~P~-------~-----~~~- 109 (284)
T cd00950 49 TLSDEEHEAVIEAVVEAVNGRVPVIAGTGSN------NTAEAIELTKRAEKAGADAALVVTPY-------Y-----NKP- 109 (284)
T ss_pred hCCHHHHHHHHHHHHHHhCCCCcEEeccCCc------cHHHHHHHHHHHHHcCCCEEEEcccc-------c-----CCC-
Confidence 344444333333333333332 345544433 47888999999999999999999875 1 111
Q ss_pred CCCCCHHHHHHHHHH-HhhCCCEEEE
Q 021281 84 SSYGSEHLLKALLHK-MKQHKVRAMA 108 (314)
Q Consensus 84 ~~~Gt~~df~~lv~~-ah~~Gi~Vil 108 (314)
+.+++.+..++ |.+-++.||+
T Consensus 110 ----~~~~l~~~~~~ia~~~~~pi~l 131 (284)
T cd00950 110 ----SQEGLYAHFKAIAEATDLPVIL 131 (284)
T ss_pred ----CHHHHHHHHHHHHhcCCCCEEE
Confidence 23444444443 4445888886
No 341
>PRK09331 Sep-tRNA:Cys-tRNA synthetase; Provisional
Probab=39.00 E-value=31 Score=32.99 Aligned_cols=32 Identities=9% Similarity=0.122 Sum_probs=28.0
Q ss_pred cCCCCCCHHHHHHHHHHHhhCCCEEEEeeeec
Q 021281 82 LNSSYGSEHLLKALLHKMKQHKVRAMADIVIN 113 (314)
Q Consensus 82 id~~~Gt~~df~~lv~~ah~~Gi~VilD~V~N 113 (314)
++...|+..+++++++.||++|+.|++|-+.-
T Consensus 167 ~~~~tG~~~~l~~I~~la~~~g~~livD~a~~ 198 (387)
T PRK09331 167 VDGNYGNLADAKKVAKVAHEYGIPFLLNGAYT 198 (387)
T ss_pred CCCCCcccccHHHHHHHHHHcCCEEEEECCcc
Confidence 44568999999999999999999999999743
No 342
>PRK08573 phosphomethylpyrimidine kinase; Provisional
Probab=38.99 E-value=64 Score=31.81 Aligned_cols=75 Identities=7% Similarity=0.043 Sum_probs=48.2
Q ss_pred HHHHHHhhhHHHHcCCCEEEeCCCCCCCCCCC-CCcc---------------cCC---Cc-CCCCCCHHHHHHHHHHHhh
Q 021281 42 WRNLERKVPDISKSGFTSVWLPPATHSFAPEG-YLPQ---------------NLY---SL-NSSYGSEHLLKALLHKMKQ 101 (314)
Q Consensus 42 ~~gi~~~ldyl~~lG~~~I~l~Pi~~~~~~~g-Y~~~---------------d~~---~i-d~~~Gt~~df~~lv~~ah~ 101 (314)
=+||..-|.-+..||+.+.-+.-........+ +.+. +-+ .+ ..-+++.+.+..+++.+++
T Consensus 16 gaGi~aDi~t~~alg~~~~~v~Ta~t~Qnt~~~~~i~~~~~~~~~~q~~a~~~d~~~~~ik~G~l~~~e~~~~i~~~~k~ 95 (448)
T PRK08573 16 GAGIEADLKTFAALGVHGAVAITSVTAQNTYEVRAIHDLPPEVVAAQIEAVWEDMGIDAAKTGMLSNREIIEAVAKTVSK 95 (448)
T ss_pred HHHHHHHHHHHHHcCCeecccceEEEeecCCCceEEEECCHHHHHHHHHHHHhcCCCCEEEECCcCCHHHHHHHHHHHHH
Confidence 48999999999999997765433221111111 0000 000 01 1225678899999999999
Q ss_pred CCCEEEEeeeecccc
Q 021281 102 HKVRAMADIVINHRV 116 (314)
Q Consensus 102 ~Gi~VilD~V~NH~~ 116 (314)
+|++|++|-|+-..+
T Consensus 96 ~g~~vv~DPv~~~~s 110 (448)
T PRK08573 96 YGFPLVVDPVMIAKS 110 (448)
T ss_pred cCCCEEEcCccccCC
Confidence 999999998876543
No 343
>PRK08898 coproporphyrinogen III oxidase; Provisional
Probab=38.65 E-value=49 Score=32.00 Aligned_cols=63 Identities=16% Similarity=0.123 Sum_probs=42.1
Q ss_pred HhhhHHHHcCCCEEEeCCCCCCCCCCCCCcccCCCcCCCCCCHHHHHHHHHHHhhCCCEEEEeeeeccccC
Q 021281 47 RKVPDISKSGFTSVWLPPATHSFAPEGYLPQNLYSLNSSYGSEHLLKALLHKMKQHKVRAMADIVINHRVG 117 (314)
Q Consensus 47 ~~ldyl~~lG~~~I~l~Pi~~~~~~~gY~~~d~~~id~~~Gt~~df~~lv~~ah~~Gi~VilD~V~NH~~~ 117 (314)
++|..|+++||+.|.|.- ++.. ..-+-.++ +--+.++..+.|+.+++.+..|-+|++++--+.
T Consensus 123 e~L~~l~~~GvnrisiGv--QS~~-----~~~L~~l~-R~~~~~~~~~~i~~~~~~~~~v~~dlI~GlPgq 185 (394)
T PRK08898 123 EKFAQFRASGVNRLSIGI--QSFN-----DAHLKALG-RIHDGAEARAAIEIAAKHFDNFNLDLMYALPGQ 185 (394)
T ss_pred HHHHHHHHcCCCeEEEec--ccCC-----HHHHHHhC-CCCCHHHHHHHHHHHHHhCCceEEEEEcCCCCC
Confidence 667778888888877652 1211 11112222 333678888899999999999999999986554
No 344
>TIGR03586 PseI pseudaminic acid synthase.
Probab=38.47 E-value=1e+02 Score=29.20 Aligned_cols=71 Identities=10% Similarity=0.084 Sum_probs=43.3
Q ss_pred CchHHHHHHhhhHHHHcCCCEEEeCCCCCCC-----CCCCCCccc-CCCcCCC-------CCCHHHHHHHHHHHhhCCCE
Q 021281 39 HDWWRNLERKVPDISKSGFTSVWLPPATHSF-----APEGYLPQN-LYSLNSS-------YGSEHLLKALLHKMKQHKVR 105 (314)
Q Consensus 39 ~g~~~gi~~~ldyl~~lG~~~I~l~Pi~~~~-----~~~gY~~~d-~~~id~~-------~Gt~~df~~lv~~ah~~Gi~ 105 (314)
+|+++-..+-++..++.|.++|=+-=..... ....|...+ .+.-.+. -=+.+++++|.+.|++.||.
T Consensus 13 ~G~~~~A~~lI~~A~~aGAdavKFQ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~el~~e~~~~L~~~~~~~Gi~ 92 (327)
T TIGR03586 13 NGSLERALAMIEAAKAAGADAIKLQTYTPDTITLDSDRPEFIIKGGLWDGRTLYDLYQEAHTPWEWHKELFERAKELGLT 92 (327)
T ss_pred CChHHHHHHHHHHHHHhCCCEEEeeeccHHHhhccccccccccccCCcCCccHHHHHHHhhCCHHHHHHHHHHHHHhCCc
Confidence 3589999999999999999998542111000 000111100 0110011 11357889999999999999
Q ss_pred EEEe
Q 021281 106 AMAD 109 (314)
Q Consensus 106 VilD 109 (314)
++-.
T Consensus 93 ~~st 96 (327)
T TIGR03586 93 IFSS 96 (327)
T ss_pred EEEc
Confidence 9973
No 345
>PRK05301 pyrroloquinoline quinone biosynthesis protein PqqE; Provisional
Probab=38.19 E-value=54 Score=31.28 Aligned_cols=28 Identities=21% Similarity=0.160 Sum_probs=22.9
Q ss_pred CCHHHHHHHHHHHhhCCCEEEEeeeecc
Q 021281 87 GSEHLLKALLHKMKQHKVRAMADIVINH 114 (314)
Q Consensus 87 Gt~~df~~lv~~ah~~Gi~VilD~V~NH 114 (314)
|+-+...+.++.+++.|++|.+-+|++-
T Consensus 138 g~f~~~~~~i~~l~~~g~~v~i~~vv~~ 165 (378)
T PRK05301 138 GAFAKKLAVARLVKAHGYPLTLNAVIHR 165 (378)
T ss_pred chHHHHHHHHHHHHHCCCceEEEEEeec
Confidence 5677777788899999999988888754
No 346
>PTZ00125 ornithine aminotransferase-like protein; Provisional
Probab=38.19 E-value=95 Score=29.53 Aligned_cols=61 Identities=15% Similarity=0.139 Sum_probs=42.0
Q ss_pred hHHHHHHhhhHHHHcCCCEEEeCCCCCCCCCCCCCcccCCCcCCCCCCHHHHHHHHHHHhhCCCEEEEeeeeccccC
Q 021281 41 WWRNLERKVPDISKSGFTSVWLPPATHSFAPEGYLPQNLYSLNSSYGSEHLLKALLHKMKQHKVRAMADIVINHRVG 117 (314)
Q Consensus 41 ~~~gi~~~ldyl~~lG~~~I~l~Pi~~~~~~~gY~~~d~~~id~~~Gt~~df~~lv~~ah~~Gi~VilD~V~NH~~~ 117 (314)
+.+.+++.+. .-.+.+|++.|++.. .|.-+ -+.+.++++.+-|+++|+-+|+|=|....+.
T Consensus 166 d~~~le~~l~---~~~~~~v~~ep~~~~---~G~~~----------~~~~~l~~l~~l~~~~~~lli~Dev~~g~g~ 226 (400)
T PTZ00125 166 DVEALEKLLQ---DPNVAAFIVEPIQGE---AGVIV----------PDDGYLKQVYELCKKYNVLLIVDEIQTGLGR 226 (400)
T ss_pred CHHHHHHHhC---CCCeEEEEEcCccCC---CCCcc----------CCHHHHHHHHHHHHHcCCEEEEeccccCCCc
Confidence 4666666553 235778888887422 23211 1345699999999999999999999865553
No 347
>PRK14340 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=38.10 E-value=69 Score=31.58 Aligned_cols=31 Identities=10% Similarity=0.036 Sum_probs=27.6
Q ss_pred CHHHHHHHHHHHhhC--CCEEEEeeeeccccCC
Q 021281 88 SEHLLKALLHKMKQH--KVRAMADIVINHRVGT 118 (314)
Q Consensus 88 t~~df~~lv~~ah~~--Gi~VilD~V~NH~~~~ 118 (314)
+.++++++|+.++++ ||.|..|+.+.+-+..
T Consensus 281 t~~~~~~~v~~lr~~~pgi~i~td~IvGfPgET 313 (445)
T PRK14340 281 TIEEYLEKIALIRSAIPGVTLSTDLIAGFCGET 313 (445)
T ss_pred CHHHHHHHHHHHHHhCCCCEEeccEEEECCCCC
Confidence 678999999999999 9999999999876653
No 348
>COG2200 Rtn c-di-GMP phosphodiesterase class I (EAL domain) [Signal transduction mechanisms]
Probab=38.01 E-value=63 Score=29.15 Aligned_cols=79 Identities=11% Similarity=0.156 Sum_probs=54.3
Q ss_pred eeEEEEeeCCCCCCchHHHHHHhhhHHHHcCCCEEEeCCCCCCCCCCCCC--------cccCCCcCCCCC--------CH
Q 021281 26 EILFQGFNWESCKHDWWRNLERKVPDISKSGFTSVWLPPATHSFAPEGYL--------PQNLYSLNSSYG--------SE 89 (314)
Q Consensus 26 ~~i~q~F~w~~~~~g~~~gi~~~ldyl~~lG~~~I~l~Pi~~~~~~~gY~--------~~d~~~id~~~G--------t~ 89 (314)
.+++++-+...-. +.+.+.+.+..|+++||.- .|-= . ..||. +.|+-+||..|- ..
T Consensus 121 ~l~lEitE~~~~~--~~~~~~~~l~~L~~~G~~i-alDD---F--GtG~ssl~~L~~l~~d~iKID~~fi~~i~~~~~~~ 192 (256)
T COG2200 121 RLVLEITESALID--DLDTALALLRQLRELGVRI-ALDD---F--GTGYSSLSYLKRLPPDILKIDRSFVRDLETDARDQ 192 (256)
T ss_pred eEEEEEeCchhhc--CHHHHHHHHHHHHHCCCeE-EEEC---C--CCCHHHHHHHhhCCCCeEEECHHHHhhcccCcchH
Confidence 6888888865422 3567888999999999743 3221 1 12332 455666775442 23
Q ss_pred HHHHHHHHHHhhCCCEEEEeeee
Q 021281 90 HLLKALLHKMKQHKVRAMADIVI 112 (314)
Q Consensus 90 ~df~~lv~~ah~~Gi~VilD~V~ 112 (314)
.-++.+|+-||+.|++||...|=
T Consensus 193 ~iv~~iv~la~~l~~~vvaEGVE 215 (256)
T COG2200 193 AIVRAIVALAHKLGLTVVAEGVE 215 (256)
T ss_pred HHHHHHHHHHHHCCCEEEEeecC
Confidence 46999999999999999997763
No 349
>PRK15029 arginine decarboxylase; Provisional
Probab=37.95 E-value=74 Score=33.71 Aligned_cols=28 Identities=14% Similarity=-0.044 Sum_probs=24.5
Q ss_pred CCCCCHHHHHHHHHHHhhCCCEEEEeee
Q 021281 84 SSYGSEHLLKALLHKMKQHKVRAMADIV 111 (314)
Q Consensus 84 ~~~Gt~~df~~lv~~ah~~Gi~VilD~V 111 (314)
+-+|...+++.+++.||++|+.|++|=.
T Consensus 322 TY~Gv~~di~~I~~~~h~~~~~llvDEA 349 (755)
T PRK15029 322 TYDGVCYNAKEAQDLLEKTSDRLHFDEA 349 (755)
T ss_pred CCcceeeCHHHHHHHHHhcCCeEEEECc
Confidence 4568889999999999999999999853
No 350
>PRK02627 acetylornithine aminotransferase; Provisional
Probab=37.90 E-value=94 Score=29.42 Aligned_cols=60 Identities=18% Similarity=0.158 Sum_probs=40.7
Q ss_pred hHHHHHHhhhHHHHcCCCEEEeCCCCCCCCCCCCCcccCCCcCCCCCCHHHHHHHHHHHhhCCCEEEEeeeeccccC
Q 021281 41 WWRNLERKVPDISKSGFTSVWLPPATHSFAPEGYLPQNLYSLNSSYGSEHLLKALLHKMKQHKVRAMADIVINHRVG 117 (314)
Q Consensus 41 ~~~gi~~~ldyl~~lG~~~I~l~Pi~~~~~~~gY~~~d~~~id~~~Gt~~df~~lv~~ah~~Gi~VilD~V~NH~~~ 117 (314)
+.+.+++.+. -.+.+|++.|+... .|-.+ . +.+.++++++.|+++|+-||+|=|.-..+.
T Consensus 171 d~~~l~~~i~----~~~~~vii~p~~~~---~G~~~-----~-----~~~~l~~l~~l~~~~~~~lI~DE~~~g~g~ 230 (396)
T PRK02627 171 DIEALKAAIT----DKTAAVMLEPIQGE---GGVNP-----A-----DKEYLQALRELCDENGILLILDEVQTGMGR 230 (396)
T ss_pred CHHHHHHhcC----CCeEEEEEecccCC---CCCcc-----C-----CHHHHHHHHHHHHHcCCEEEEechhcCCCc
Confidence 4555655552 24778999987432 23111 1 245799999999999999999999775543
No 351
>COG2873 MET17 O-acetylhomoserine sulfhydrylase [Amino acid transport and metabolism]
Probab=37.88 E-value=33 Score=33.15 Aligned_cols=61 Identities=10% Similarity=0.072 Sum_probs=38.5
Q ss_pred HHHcCCCEEEeCCCCCCC-----CCCCCCcccCCCcCCCCCCHHHHHHHHHHHhhCCCEEEEeeeec
Q 021281 52 ISKSGFTSVWLPPATHSF-----APEGYLPQNLYSLNSSYGSEHLLKALLHKMKQHKVRAMADIVIN 113 (314)
Q Consensus 52 l~~lG~~~I~l~Pi~~~~-----~~~gY~~~d~~~id~~~Gt~~df~~lv~~ah~~Gi~VilD~V~N 113 (314)
++.+|++..++-|.-... ...-=.+. ...|...-++.-|+..+.+-||++|+-+|+|-.+-
T Consensus 122 l~~~Gi~v~fvd~~d~~~~~~aI~~nTkavf-~EtigNP~~~v~Die~ia~iAh~~gvpliVDNT~a 187 (426)
T COG2873 122 LKRLGIEVRFVDPDDPENFEAAIDENTKAVF-AETIGNPGLDVLDIEAIAEIAHRHGVPLIVDNTFA 187 (426)
T ss_pred HHhcCcEEEEeCCCCHHHHHHHhCcccceEE-EEeccCCCccccCHHHHHHHHHHcCCcEEEecCCC
Confidence 599999999987753111 00000010 12233333455689999999999999999985543
No 352
>cd01494 AAT_I Aspartate aminotransferase (AAT) superfamily (fold type I) of pyridoxal phosphate (PLP)-dependent enzymes. PLP combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the substrate in four kinds of reactions (1) transamination (movement of amino groups), (2) racemization (redistribution of enantiomers), (3) decarboxylation (removing COOH groups), and (4) various side-chain reactions depending on the enzyme involved. Pyridoxal phosphate (PLP) dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalyzed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary history of these enzymes. Structure and sequence analysis
Probab=37.86 E-value=28 Score=27.98 Aligned_cols=30 Identities=17% Similarity=0.090 Sum_probs=23.2
Q ss_pred CCHHHHHHHHHHHhhCCCEEEEeeeecccc
Q 021281 87 GSEHLLKALLHKMKQHKVRAMADIVINHRV 116 (314)
Q Consensus 87 Gt~~df~~lv~~ah~~Gi~VilD~V~NH~~ 116 (314)
|...+++++++.||++|+.+|+|-...-..
T Consensus 106 g~~~~~~~l~~~~~~~~~~li~D~a~~~~~ 135 (170)
T cd01494 106 GVLVPLKEIRKIAKEYGILLLVDAASAGGA 135 (170)
T ss_pred CeEcCHHHHHHHHHHcCCEEEEeccccccc
Confidence 344456899999999999999997665333
No 353
>COG2179 Predicted hydrolase of the HAD superfamily [General function prediction only]
Probab=37.60 E-value=1.2e+02 Score=26.05 Aligned_cols=49 Identities=16% Similarity=0.237 Sum_probs=33.1
Q ss_pred hhhHHHHcCCCEEEeCCCCCCCCCCCCCcccCCCcCCCCCCHHHHHHHHHHHhhCCCEEEE
Q 021281 48 KVPDISKSGFTSVWLPPATHSFAPEGYLPQNLYSLNSSYGSEHLLKALLHKMKQHKVRAMA 108 (314)
Q Consensus 48 ~ldyl~~lG~~~I~l~Pi~~~~~~~gY~~~d~~~id~~~Gt~~df~~lv~~ah~~Gi~Vil 108 (314)
..+.|++.|+++|.+= .++. .-.-+...+| +++++.+++++++||+|++
T Consensus 19 ~~~~L~~~Gikgvi~D--lDNT---------Lv~wd~~~~t-pe~~~W~~e~k~~gi~v~v 67 (175)
T COG2179 19 TPDILKAHGIKGVILD--LDNT---------LVPWDNPDAT-PELRAWLAELKEAGIKVVV 67 (175)
T ss_pred CHHHHHHcCCcEEEEe--ccCc---------eecccCCCCC-HHHHHHHHHHHhcCCEEEE
Confidence 3578899999999752 0110 1112233344 5699999999999999998
No 354
>cd00953 KDG_aldolase KDG (2-keto-3-deoxygluconate) aldolases found in archaea. This subfamily of enzymes is adapted for high thermostability and shows specificity for non-phosphorylated substrates. The enzyme catalyses the reversible aldol cleavage of 2-keto-3-dexoygluconate to pyruvate and glyceraldehyde, the third step of a modified non-phosphorylated Entner-Doudoroff pathway of glucose oxidation. KDG aldolase shows no significant sequence similarity to microbial 2-keto-3-deoxyphosphogluconate (KDPG) aldolases, and the enzyme shows no activity with glyceraldehyde 3-phosphate as substrate. The enzyme is a tetramer and a member of the DHDPS family of Schiff-base-dependent class I aldolases.
Probab=37.54 E-value=1.1e+02 Score=27.99 Aligned_cols=80 Identities=14% Similarity=0.118 Sum_probs=50.3
Q ss_pred cccchhhcccccccCccccCCceeEEEEeeCCCCCCchHHHHHHhhhHHHHcCCCEEEeCCCCCCCCCCCCCcccCCCcC
Q 021281 4 TSKGFDETNQQTDLGAVIRNGREILFQGFNWESCKHDWWRNLERKVPDISKSGFTSVWLPPATHSFAPEGYLPQNLYSLN 83 (314)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~i~q~F~w~~~~~g~~~gi~~~ldyl~~lG~~~I~l~Pi~~~~~~~gY~~~d~~~id 83 (314)
.++|.+|-..-....-...+ .||.++-.-+ .+..++...+.+++|+++|.+.|++ | +..
T Consensus 47 ~~Lt~eEr~~l~~~~~~~~~--~vi~gvg~~~------~~~ai~~a~~a~~~Gad~v~v~~P~-------y-----~~~- 105 (279)
T cd00953 47 PSLSFQEKLELLKAYSDITD--KVIFQVGSLN------LEESIELARAAKSFGIYAIASLPPY-------Y-----FPG- 105 (279)
T ss_pred ccCCHHHHHHHHHHHHHHcC--CEEEEeCcCC------HHHHHHHHHHHHHcCCCEEEEeCCc-------C-----CCC-
Confidence 34455544333333323332 3776665444 8899999999999999999998875 1 110
Q ss_pred CCCCCHHHHHHHHHHHhhCCCEEEE
Q 021281 84 SSYGSEHLLKALLHKMKQHKVRAMA 108 (314)
Q Consensus 84 ~~~Gt~~df~~lv~~ah~~Gi~Vil 108 (314)
-+.+++.+..++..+ ++.||+
T Consensus 106 ---~~~~~i~~yf~~v~~-~lpv~i 126 (279)
T cd00953 106 ---IPEEWLIKYFTDISS-PYPTFI 126 (279)
T ss_pred ---CCHHHHHHHHHHHHh-cCCEEE
Confidence 134666666666656 888887
No 355
>cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=37.42 E-value=2.4e+02 Score=25.71 Aligned_cols=71 Identities=7% Similarity=0.114 Sum_probs=47.9
Q ss_pred ceeEEEEeeCCCCCCchHHHHHHhhhHHHHcCCCEEEeCCCCCCCCCCCCCcccCCCcCCCC-CCHHHHHHHHHHHhhC-
Q 021281 25 REILFQGFNWESCKHDWWRNLERKVPDISKSGFTSVWLPPATHSFAPEGYLPQNLYSLNSSY-GSEHLLKALLHKMKQH- 102 (314)
Q Consensus 25 ~~~i~q~F~w~~~~~g~~~gi~~~ldyl~~lG~~~I~l~Pi~~~~~~~gY~~~d~~~id~~~-Gt~~df~~lv~~ah~~- 102 (314)
.-+|+|++.-+ -+...+.+..+++.|+++|.|+=- ++...+ -...+ ++++.+.++|+++++.
T Consensus 90 ~p~ivsi~g~~------~~~~~~~a~~~~~~G~d~iElN~~--cP~~~~--------~g~~~~~~~~~~~eiv~~vr~~~ 153 (296)
T cd04740 90 TPVIASIAGST------VEEFVEVAEKLADAGADAIELNIS--CPNVKG--------GGMAFGTDPEAVAEIVKAVKKAT 153 (296)
T ss_pred CcEEEEEecCC------HHHHHHHHHHHHHcCCCEEEEECC--CCCCCC--------CcccccCCHHHHHHHHHHHHhcc
Confidence 34889988654 677777778888899999999622 211111 12222 4567788888988887
Q ss_pred CCEEEEeee
Q 021281 103 KVRAMADIV 111 (314)
Q Consensus 103 Gi~VilD~V 111 (314)
++.|++-+.
T Consensus 154 ~~Pv~vKl~ 162 (296)
T cd04740 154 DVPVIVKLT 162 (296)
T ss_pred CCCEEEEeC
Confidence 777777654
No 356
>PRK14455 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=37.39 E-value=1.2e+02 Score=29.04 Aligned_cols=72 Identities=14% Similarity=0.103 Sum_probs=46.3
Q ss_pred CceeEEEEeeCCCCCCchHHHHHHhhhHHHHcCCCEEEeCCCCCCCCCCCCCcccCCCcCCCCCCHHHHHHHHHHHhhCC
Q 021281 24 GREILFQGFNWESCKHDWWRNLERKVPDISKSGFTSVWLPPATHSFAPEGYLPQNLYSLNSSYGSEHLLKALLHKMKQHK 103 (314)
Q Consensus 24 ~~~~i~q~F~w~~~~~g~~~gi~~~ldyl~~lG~~~I~l~Pi~~~~~~~gY~~~d~~~id~~~Gt~~df~~lv~~ah~~G 103 (314)
++.+.+....=.-.++ +-+.+.+-.+.++.++ ..|-|.|..+.. .+.|.. -+.+.+.++.+.++++|
T Consensus 260 ~~~v~iey~lI~gvND-s~ed~~~La~ll~~l~-~~VnLIPynp~~-~~ky~~----------ps~e~l~~f~~~L~~~g 326 (356)
T PRK14455 260 NRRVTFEYILLGGVND-QVEHAEELADLLKGIK-CHVNLIPVNPVP-ERDYVR----------TPKEDIFAFEDTLKKNG 326 (356)
T ss_pred CCeEEEEEEEeCCCCC-CHHHHHHHHHHHhcCC-CcEEEEecCcCC-CCCCcC----------CCHHHHHHHHHHHHHCC
Confidence 3456555544322222 3455666666777776 478888877653 223432 35788999999999999
Q ss_pred CEEEE
Q 021281 104 VRAMA 108 (314)
Q Consensus 104 i~Vil 108 (314)
+.|.+
T Consensus 327 i~v~i 331 (356)
T PRK14455 327 VNCTI 331 (356)
T ss_pred CcEEE
Confidence 99976
No 357
>COG1105 FruK Fructose-1-phosphate kinase and related fructose-6-phosphate kinase (PfkB) [Carbohydrate transport and metabolism]
Probab=37.33 E-value=45 Score=31.30 Aligned_cols=23 Identities=13% Similarity=0.300 Sum_probs=21.1
Q ss_pred CHHHHHHHHHHHhhCCCEEEEee
Q 021281 88 SEHLLKALLHKMKQHKVRAMADI 110 (314)
Q Consensus 88 t~~df~~lv~~ah~~Gi~VilD~ 110 (314)
..+.+.+|++.|+++|.+|++|.
T Consensus 144 ~~d~y~~li~~~~~~g~~vilD~ 166 (310)
T COG1105 144 PPDAYAELIRILRQQGAKVILDT 166 (310)
T ss_pred CHHHHHHHHHHHHhcCCeEEEEC
Confidence 46789999999999999999986
No 358
>PRK11059 regulatory protein CsrD; Provisional
Probab=37.16 E-value=48 Score=34.08 Aligned_cols=86 Identities=14% Similarity=0.141 Sum_probs=57.3
Q ss_pred ceeEEEEeeCCCCCCchHHHHHHhhhHHHHcCCCEEEeCCCCCCC---CCCCCCcccCCCcCCCCC--------CHHHHH
Q 021281 25 REILFQGFNWESCKHDWWRNLERKVPDISKSGFTSVWLPPATHSF---APEGYLPQNLYSLNSSYG--------SEHLLK 93 (314)
Q Consensus 25 ~~~i~q~F~w~~~~~g~~~gi~~~ldyl~~lG~~~I~l~Pi~~~~---~~~gY~~~d~~~id~~~G--------t~~df~ 93 (314)
+.+++++-+-.... +.+.+...+..|+++||.-.. -=+-... .+-..-+.|+-+||+.|- +..-++
T Consensus 517 ~~l~~Ei~E~~~~~--~~~~~~~~l~~L~~~G~~iai-ddfG~g~~s~~~L~~l~~d~iKid~s~v~~i~~~~~~~~~v~ 593 (640)
T PRK11059 517 KRLIFELAEADVCQ--HISRLRPVLRMLRGLGCRLAV-DQAGLTVVSTSYIKELNVELIKLHPSLVRNIHKRTENQLFVR 593 (640)
T ss_pred ceEEEEEechhhhc--CHHHHHHHHHHHHHCCCEEEE-ECCCCCcccHHHHHhCCCCEEEECHHHHhhhhcCchhHHHHH
Confidence 46888887754333 378899999999999996543 2111110 111222566777775542 233489
Q ss_pred HHHHHHhhCCCEEEEeeeec
Q 021281 94 ALLHKMKQHKVRAMADIVIN 113 (314)
Q Consensus 94 ~lv~~ah~~Gi~VilD~V~N 113 (314)
.+++.||..|++||...|=+
T Consensus 594 sli~~a~~~~i~viAegVEt 613 (640)
T PRK11059 594 SLVGACAGTETQVFATGVES 613 (640)
T ss_pred HHHHHHHHCCCeEEEEEeCC
Confidence 99999999999999987754
No 359
>PRK04147 N-acetylneuraminate lyase; Provisional
Probab=37.09 E-value=88 Score=28.80 Aligned_cols=57 Identities=11% Similarity=0.012 Sum_probs=36.2
Q ss_pred cccchhhcccccccCccccCCc-eeEEEEeeCCCCCCchHHHHHHhhhHHHHcCCCEEEeCCCC
Q 021281 4 TSKGFDETNQQTDLGAVIRNGR-EILFQGFNWESCKHDWWRNLERKVPDISKSGFTSVWLPPAT 66 (314)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~-~~i~q~F~w~~~~~g~~~gi~~~ldyl~~lG~~~I~l~Pi~ 66 (314)
.++|.+|-..-....-...+|+ .||.++-.= +.+..++...+.+++|+++|-+.|++
T Consensus 52 ~~Ls~eEr~~~~~~~~~~~~~~~~viagvg~~------~t~~ai~~a~~a~~~Gad~v~v~~P~ 109 (293)
T PRK04147 52 FLLSTEEKKQVLEIVAEEAKGKVKLIAQVGSV------NTAEAQELAKYATELGYDAISAVTPF 109 (293)
T ss_pred ccCCHHHHHHHHHHHHHHhCCCCCEEecCCCC------CHHHHHHHHHHHHHcCCCEEEEeCCc
Confidence 3445554443333333333332 345555332 47888999999999999999999875
No 360
>PF04914 DltD_C: DltD C-terminal region; InterPro: IPR006998 The dlt operon (dltA to dltD) of Lactobacillus rhamnosus 7469 encodes four proteins responsible for the esterification of lipoteichoic acid (LTA) by D-alanine. These esters play an important role in controlling the net anionic charge of the poly (GroP) moiety of LTA. DltA and DltC encode the D-alanine-D-alanyl carrier protein ligase (Dcl) and D-alanyl carrier protein (Dcp), respectively. Whereas the functions of DltA and DltC are defined, the functions of DltB and DltD are unknown. In vitro assays showed that DltD bound Dcp for ligation with D-alanine by Dcl in the presence of ATP. In contrast, the homologue of Dcp, the Escherichia coli acyl carrier protein (ACP), involved in fatty acid biosynthesis, was not bound to DltD and thus was not ligated with D-alanine. DltD also catalyzed the hydrolysis of the mischarged D-alanyl-ACP. The hydrophobic N-terminal sequence of DltD was required for anchoring the protein in the membrane. It is hypothesized that this membrane-associated DltD facilitates the binding of Dcp and Dcl for ligation of Dcp with D-alanine and that the resulting D-alanyl-Dcp is translocated to the primary site of D-alanylation []. These sequences contain the C-terminal region of DltD.; PDB: 3BMA_C.
Probab=36.99 E-value=45 Score=27.10 Aligned_cols=55 Identities=22% Similarity=0.352 Sum_probs=35.8
Q ss_pred HHHHHHHHHHhhCCCEEEEeeeeccccCCCCCCCCcCcCCCCCCCCCCCCCcccCCCCCccccCCCCCCCCCCCCCCCHH
Q 021281 90 HLLKALLHKMKQHKVRAMADIVINHRVGTTQGHGGKYNRYDGIPLSWDEHAVTSCTGGLGNGSTGDNFHGVPNIDHTQHF 169 (314)
Q Consensus 90 ~df~~lv~~ah~~Gi~VilD~V~NH~~~~~~~~~~~y~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~~p~ 169 (314)
+||+-|++.|++.|++|++=+++ .++.|..+.| + +.+
T Consensus 36 ~Dl~l~L~~~k~~g~~~lfVi~P---------vNg~wydytG----------------------------~------~~~ 72 (130)
T PF04914_consen 36 DDLQLLLDVCKELGIDVLFVIQP---------VNGKWYDYTG----------------------------L------SKE 72 (130)
T ss_dssp HHHHHHHHHHHHTT-EEEEEE-------------HHHHHHTT------------------------------------HH
T ss_pred HHHHHHHHHHHHcCCceEEEecC---------CcHHHHHHhC----------------------------C------CHH
Confidence 69999999999999999984432 1222222211 1 267
Q ss_pred HHHHHHHHHHHHHHhCCC
Q 021281 170 VRKDIIAWLRWLRNTVGF 187 (314)
Q Consensus 170 v~~~l~~~~~~w~~~~gv 187 (314)
.|+...+-++..+++.|+
T Consensus 73 ~r~~~y~kI~~~~~~~gf 90 (130)
T PF04914_consen 73 MRQEYYKKIKYQLKSQGF 90 (130)
T ss_dssp HHHHHHHHHHHHHHTTT-
T ss_pred HHHHHHHHHHHHHHHCCC
Confidence 888888888888888887
No 361
>TIGR01140 L_thr_O3P_dcar L-threonine-O-3-phosphate decarboxylase. This family contains pyridoxal phosphate-binding class II aminotransferases (see PFAM:PF00222) closely related to, yet distinct from, histidinol-phosphate aminotransferase (HisC). It is found in cobalamin biosynthesis operons in Salmonella typhimurium and Bacillus halodurans (each of which also has HisC) and has been shown to have L-threonine-O-3-phosphate decarboxylase activity in Salmonella. Although the gene symbol cobD was assigned in Salmonella, cobD in other contexts refers to a different cobalamin biosynthesis enzyme, modeled by pfam03186 and called cbiB in Salmonella.
Probab=36.78 E-value=37 Score=31.63 Aligned_cols=29 Identities=14% Similarity=0.070 Sum_probs=25.1
Q ss_pred CHHHHHHHHHHHhhCCCEEEEeeeecccc
Q 021281 88 SEHLLKALLHKMKQHKVRAMADIVINHRV 116 (314)
Q Consensus 88 t~~df~~lv~~ah~~Gi~VilD~V~NH~~ 116 (314)
+.++++++++.|+++|+.||+|-++-...
T Consensus 143 ~~~~~~~l~~~a~~~~~~ii~De~y~~~~ 171 (330)
T TIGR01140 143 PPETLLALAARLRARGGWLVVDEAFIDFT 171 (330)
T ss_pred CHHHHHHHHHHhHhcCCEEEEECcccccC
Confidence 47889999999999999999999875443
No 362
>PRK11359 cyclic-di-GMP phosphodiesterase; Provisional
Probab=36.74 E-value=39 Score=35.27 Aligned_cols=86 Identities=12% Similarity=0.061 Sum_probs=55.9
Q ss_pred ceeEEEEeeCCCCCCchHHHHHHhhhHHHHcCCCEEEeCCCCCCCCC---CCCCcccCCCcCCCCC--------CHHHHH
Q 021281 25 REILFQGFNWESCKHDWWRNLERKVPDISKSGFTSVWLPPATHSFAP---EGYLPQNLYSLNSSYG--------SEHLLK 93 (314)
Q Consensus 25 ~~~i~q~F~w~~~~~g~~~gi~~~ldyl~~lG~~~I~l~Pi~~~~~~---~gY~~~d~~~id~~~G--------t~~df~ 93 (314)
+.+++++-+-.... +++.+.+.|..|+++||.-- |-=+-.+.++ -.--+.|+-+||..+- ...-++
T Consensus 662 ~~l~~ei~e~~~~~--~~~~~~~~l~~l~~~G~~i~-ld~fg~~~~~~~~l~~l~~d~iKid~~~~~~~~~~~~~~~~~~ 738 (799)
T PRK11359 662 HQLTVEITESMMME--HDTEIFKRIQILRDMGVGLS-VDDFGTGFSGLSRLVSLPVTEIKIDKSFVDRCLTEKRILALLE 738 (799)
T ss_pred HhEEEEEcCchhhc--CHHHHHHHHHHHHHCCCEEE-EECCCCchhhHHHHhhCCCCEEEECHHHHhhcccChhHHHHHH
Confidence 46888887754332 47889999999999999543 3211111100 0111356667776552 123488
Q ss_pred HHHHHHhhCCCEEEEeeeec
Q 021281 94 ALLHKMKQHKVRAMADIVIN 113 (314)
Q Consensus 94 ~lv~~ah~~Gi~VilD~V~N 113 (314)
.++.-||+.||+||++.|=+
T Consensus 739 ~~~~~~~~~~i~via~gVe~ 758 (799)
T PRK11359 739 AITSIGQSLNLTVVAEGVET 758 (799)
T ss_pred HHHHHHHHCCCeEEEEcCCC
Confidence 99999999999999987655
No 363
>COG3033 TnaA Tryptophanase [Amino acid transport and metabolism]
Probab=36.70 E-value=93 Score=30.08 Aligned_cols=57 Identities=19% Similarity=0.230 Sum_probs=43.8
Q ss_pred hHHHHHHhhhHHHHcCCCEEEeCCCCCCCCCCCCCcccCCCcCCCCCCHHHHHHHHHHHhhCCCEEEEee
Q 021281 41 WWRNLERKVPDISKSGFTSVWLPPATHSFAPEGYLPQNLYSLNSSYGSEHLLKALLHKMKQHKVRAMADI 110 (314)
Q Consensus 41 ~~~gi~~~ldyl~~lG~~~I~l~Pi~~~~~~~gY~~~d~~~id~~~Gt~~df~~lv~~ah~~Gi~VilD~ 110 (314)
|++.+++.++....-.|-.|.++--.. +.|=+|. +++-+|++-+-||+.||.||+|.
T Consensus 170 D~~kLe~lidevG~~nvp~I~~tiT~N---sagGQpV----------Sm~n~r~v~~ia~ky~ipvv~Da 226 (471)
T COG3033 170 DLEKLERLIDEVGADNVPYIVLTITNN---SAGGQPV----------SMANMKAVYEIAKKYDIPVVMDA 226 (471)
T ss_pred CHHHHHHHHHHhCcccCcEEEEEEecc---ccCCCcc----------hHHhHHHHHHHHHHcCCcEEeeh
Confidence 888888888888777777777653322 2344555 47889999999999999999985
No 364
>cd01948 EAL EAL domain. This domain is found in diverse bacterial signaling proteins. It is called EAL after its conserved residues and is also known as domain of unknown function 2 (DUF2). The EAL domain has been shown to stimulate degradation of a second messenger, cyclic di-GMP, and is a good candidate for a diguanylate phosphodiesterase function. Together with the GGDEF domain, EAL might be involved in regulating cell surface adhesiveness in bacteria.
Probab=36.64 E-value=43 Score=29.00 Aligned_cols=86 Identities=10% Similarity=0.146 Sum_probs=53.8
Q ss_pred ceeEEEEeeCCCCCCchHHHHHHhhhHHHHcCCCEEEeCCCCCCCC---CCCCCcccCCCcCCCC--------CCHHHHH
Q 021281 25 REILFQGFNWESCKHDWWRNLERKVPDISKSGFTSVWLPPATHSFA---PEGYLPQNLYSLNSSY--------GSEHLLK 93 (314)
Q Consensus 25 ~~~i~q~F~w~~~~~g~~~gi~~~ldyl~~lG~~~I~l~Pi~~~~~---~~gY~~~d~~~id~~~--------Gt~~df~ 93 (314)
+.+++++-+-.... +...+.+.+..|++.|+. |.|-=+-.... .-..-..|+-++|.++ ....-++
T Consensus 116 ~~l~iei~e~~~~~--~~~~~~~~~~~l~~~G~~-l~ld~~g~~~~~~~~l~~~~~d~iKld~~~~~~~~~~~~~~~~l~ 192 (240)
T cd01948 116 RRLVLEITESALID--DLEEALATLRRLRALGVR-IALDDFGTGYSSLSYLKRLPVDYLKIDRSFVRDIETDPEDRAIVR 192 (240)
T ss_pred HHEEEEEecchhhC--CHHHHHHHHHHHHHCCCe-EEEeCCCCcHhhHHHHHhCCCCEEEECHHHHHhHhcChhhHHHHH
Confidence 35788887654332 355688899999999997 34421111110 0111124455666433 3356689
Q ss_pred HHHHHHhhCCCEEEEeeeec
Q 021281 94 ALLHKMKQHKVRAMADIVIN 113 (314)
Q Consensus 94 ~lv~~ah~~Gi~VilD~V~N 113 (314)
.++..||..|++||+.-|=+
T Consensus 193 ~l~~~~~~~~~~via~gVe~ 212 (240)
T cd01948 193 AIIALAHSLGLKVVAEGVET 212 (240)
T ss_pred HHHHHHHHCCCeEEEEecCC
Confidence 99999999999999977655
No 365
>cd02872 GH18_chitolectin_chitotriosidase This conserved domain family includes a large number of catalytically inactive chitinase-like lectins (chitolectins) including YKL-39, YKL-40 (HCGP39), YM1, oviductin, and AMCase (acidic mammalian chitinase), as well as catalytically active chitotriosidases. The conserved domain is an eight-stranded alpha/beta barrel fold belonging to the family 18 glycosyl hydrolases. The fold has a pronounced active-site cleft at the C-terminal end of the beta-barrel. The chitolectins lack a key active site glutamate (the proton donor required for hydrolytic activity) but retain highly conserved residues involved in oligosaccharide binding. Chitotriosidase is a chitinolytic enzyme expressed in maturing macrophages, which suggests that it plays a part in antimicrobial defense. Chitotriosidase hydrolyzes chitotriose, as well as colloidal chitin to yield chitobiose and is therefore considered an exochitinase. Chitotriosidase occurs in two major forms, the la
Probab=36.57 E-value=41 Score=31.86 Aligned_cols=46 Identities=20% Similarity=0.145 Sum_probs=33.8
Q ss_pred CCHHHHHHHHHHHHHHHHhCCCCEEEeccCCCC-----------CHHHHHHHHHhhC
Q 021281 166 TQHFVRKDIIAWLRWLRNTVGFQDFRFDFARGY-----------SAKYVKEYIEGAR 211 (314)
Q Consensus 166 ~~p~v~~~l~~~~~~w~~~~gvDGfRlDaa~~i-----------~~~f~~~~~~~~~ 211 (314)
.++..|+.+++.+..|++++|+||+-+|--.-. -..|++++.++++
T Consensus 92 ~~~~~r~~fi~~iv~~l~~~~~DGidiDwE~p~~~~~~~~d~~~~~~ll~~lr~~l~ 148 (362)
T cd02872 92 ASPENRKTFIKSAIAFLRKYGFDGLDLDWEYPGQRGGPPEDKENFVTLLKELREAFE 148 (362)
T ss_pred CCHHHHHHHHHHHHHHHHHcCCCCeeeeeeccccCCCCHHHHHHHHHHHHHHHHHHH
Confidence 457899999999999999999999999943211 1246666666654
No 366
>PLN02428 lipoic acid synthase
Probab=36.49 E-value=1.9e+02 Score=27.64 Aligned_cols=60 Identities=10% Similarity=0.049 Sum_probs=46.0
Q ss_pred hHHHHHHhhhHHHHcCCCEEEeCCCCCCCCCCCCCcccCCCcCCCCCCHHHHHHHHHHHhhCCCEEEE
Q 021281 41 WWRNLERKVPDISKSGFTSVWLPPATHSFAPEGYLPQNLYSLNSSYGSEHLLKALLHKMKQHKVRAMA 108 (314)
Q Consensus 41 ~~~gi~~~ldyl~~lG~~~I~l~Pi~~~~~~~gY~~~d~~~id~~~Gt~~df~~lv~~ah~~Gi~Vil 108 (314)
+.+.+.+.++.|+++|++.|-+....... .. +..| .+|=++++|+.+-+.+-+.|.+-+.
T Consensus 260 T~Edv~e~l~~Lrelgvd~vtigqyL~Ps-~~------h~~v-~~~v~p~~f~~~~~~~~~~gf~~v~ 319 (349)
T PLN02428 260 TDEEVVQTMEDLRAAGVDVVTFGQYLRPT-KR------HLPV-KEYVTPEKFEFWREYGEEMGFRYVA 319 (349)
T ss_pred CHHHHHHHHHHHHHcCCCEEeeccccCCC-cc------eeee-ecccCHHHHHHHHHHHHHcCCceEE
Confidence 58999999999999999999776654221 11 1222 3556899999999999999998776
No 367
>cd00614 CGS_like CGS_like: Cystathionine gamma-synthase is a PLP dependent enzyme and catalyzes the committed step of methionine biosynthesis. This pathway is unique to microorganisms and plants, rendering the enzyme an attractive target for the development of antimicrobials and herbicides. This subgroup also includes cystathionine gamma-lyases (CGL), O-acetylhomoserine sulfhydrylases and O-acetylhomoserine thiol lyases. CGL's are very similar to CGS's. Members of this group are widely distributed among all three forms of life.
Probab=36.36 E-value=31 Score=32.77 Aligned_cols=28 Identities=11% Similarity=0.007 Sum_probs=24.4
Q ss_pred CCCCHHHHHHHHHHHhhCCCEEEEeeee
Q 021281 85 SYGSEHLLKALLHKMKQHKVRAMADIVI 112 (314)
Q Consensus 85 ~~Gt~~df~~lv~~ah~~Gi~VilD~V~ 112 (314)
-.|...+++++++.||++|+.||+|-++
T Consensus 137 p~g~~~dl~~i~~la~~~g~~livD~t~ 164 (369)
T cd00614 137 PTLKVVDIEAIAELAHEHGALLVVDNTF 164 (369)
T ss_pred CCCeecCHHHHHHHHHHcCCEEEEECCC
Confidence 3567778999999999999999999874
No 368
>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed
Probab=36.32 E-value=2.1e+02 Score=30.35 Aligned_cols=29 Identities=10% Similarity=0.131 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHhhC-CCEEEEeeeeccccCCC
Q 021281 89 EHLLKALLHKMKQH-KVRAMADIVINHRVGTT 119 (314)
Q Consensus 89 ~~df~~lv~~ah~~-Gi~VilD~V~NH~~~~~ 119 (314)
.+.+|++++++|+. |-+|++-+ +|.|...
T Consensus 474 i~~~~~~~~~vh~~gg~~i~~QL--~h~Gr~~ 503 (765)
T PRK08255 474 EAAWKRIVDFVHANSDAKIGIQL--GHSGRKG 503 (765)
T ss_pred HHHHHHHHHHHHhcCCceEEEEc--cCCcccc
Confidence 46799999999999 69988866 8888754
No 369
>PLN02509 cystathionine beta-lyase
Probab=36.32 E-value=48 Score=32.92 Aligned_cols=31 Identities=6% Similarity=0.016 Sum_probs=26.8
Q ss_pred cCCCCCCHHHHHHHHHHHhhCCCEEEEeeee
Q 021281 82 LNSSYGSEHLLKALLHKMKQHKVRAMADIVI 112 (314)
Q Consensus 82 id~~~Gt~~df~~lv~~ah~~Gi~VilD~V~ 112 (314)
+..-.|...+++++++.||++|+.||+|-.+
T Consensus 226 PsNPtG~i~Dl~~I~~lAk~~g~~lIVD~A~ 256 (464)
T PLN02509 226 PTNPRQQISDIRKIAEMAHAQGALVLVDNSI 256 (464)
T ss_pred CCCCCCCHHHHHHHHHHHHHcCCEEEEECCc
Confidence 3345688899999999999999999999873
No 370
>PF00232 Glyco_hydro_1: Glycosyl hydrolase family 1; InterPro: IPR001360 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 1 GH1 from CAZY comprises enzymes with a number of known activities; beta-glucosidase (3.2.1.21 from EC); beta-galactosidase (3.2.1.23 from EC); 6-phospho-beta-galactosidase (3.2.1.85 from EC); 6-phospho-beta-glucosidase (3.2.1.86 from EC); lactase-phlorizin hydrolase (3.2.1.62 from EC), (3.2.1.108 from EC); beta-mannosidase (3.2.1.25 from EC); myrosinase (3.2.1.147 from EC). ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1QVB_A 3AHY_D 2E9L_A 2ZOX_A 2JFE_X 2E9M_A 3FIZ_A 3FIY_A 3CMJ_A 3FJ0_A ....
Probab=36.06 E-value=41 Score=33.23 Aligned_cols=64 Identities=8% Similarity=0.255 Sum_probs=40.0
Q ss_pred hHHHHHHhhhHHHHcCCCEEEeCCCCCCCCCCCCCcccCCCcCCCCCCHHHHHHHHHHHhhCCCEEEEee
Q 021281 41 WWRNLERKVPDISKSGFTSVWLPPATHSFAPEGYLPQNLYSLNSSYGSEHLLKALLHKMKQHKVRAMADI 110 (314)
Q Consensus 41 ~~~gi~~~ldyl~~lG~~~I~l~Pi~~~~~~~gY~~~d~~~id~~~Gt~~df~~lv~~ah~~Gi~VilD~ 110 (314)
.+..-.+-++-+++||+++.=++--....-+.|- --.+| --..+=.++||++|.++||+.|+-+
T Consensus 56 ~y~~y~eDi~l~~~lg~~~yRfsi~W~Ri~P~g~----~g~~n--~~~~~~Y~~~i~~l~~~gi~P~vtL 119 (455)
T PF00232_consen 56 HYHRYKEDIALMKELGVNAYRFSISWSRIFPDGF----EGKVN--EEGLDFYRDLIDELLENGIEPIVTL 119 (455)
T ss_dssp HHHHHHHHHHHHHHHT-SEEEEE--HHHHSTTSS----SSSS---HHHHHHHHHHHHHHHHTT-EEEEEE
T ss_pred chhhhhHHHHHHHhhccceeeeecchhheeeccc----ccccC--HhHhhhhHHHHHHHHhhccceeeee
Confidence 7889999999999999999876532211111120 00111 0123558999999999999999855
No 371
>PRK09257 aromatic amino acid aminotransferase; Provisional
Probab=36.04 E-value=1.4e+02 Score=28.37 Aligned_cols=30 Identities=13% Similarity=0.102 Sum_probs=26.7
Q ss_pred CHHHHHHHHHHHhhCCCEEEEeeeeccccC
Q 021281 88 SEHLLKALLHKMKQHKVRAMADIVINHRVG 117 (314)
Q Consensus 88 t~~df~~lv~~ah~~Gi~VilD~V~NH~~~ 117 (314)
+.++++++++.|+++|+-||.|-++.+...
T Consensus 190 s~~~~~~l~~~a~~~~~~ii~De~Y~~l~~ 219 (396)
T PRK09257 190 TPEQWDELAELLKERGLIPFLDIAYQGFGD 219 (396)
T ss_pred CHHHHHHHHHHHHhCCcEEEEecccccccc
Confidence 579999999999999999999999887653
No 372
>COG1891 Uncharacterized protein conserved in archaea [Function unknown]
Probab=35.97 E-value=18 Score=31.19 Aligned_cols=21 Identities=14% Similarity=0.254 Sum_probs=19.4
Q ss_pred CHHHHHHHHHHHhhCCCEEEE
Q 021281 88 SEHLLKALLHKMKQHKVRAMA 108 (314)
Q Consensus 88 t~~df~~lv~~ah~~Gi~Vil 108 (314)
+++++++||+.||++|+++-|
T Consensus 165 ~~e~l~eFvd~Ah~hGL~~Al 185 (235)
T COG1891 165 DEEELEEFVDLAHEHGLEVAL 185 (235)
T ss_pred cHHHHHHHHHHHHHcchHHHh
Confidence 578999999999999999887
No 373
>PRK09989 hypothetical protein; Provisional
Probab=35.94 E-value=93 Score=27.79 Aligned_cols=43 Identities=16% Similarity=0.227 Sum_probs=30.6
Q ss_pred HHHHhhhHHHHcCCCEEEeCCCCCCCCCCCCCcccCCCcCCCCCCHHHHHHHHHHHhhCCCEEEE
Q 021281 44 NLERKVPDISKSGFTSVWLPPATHSFAPEGYLPQNLYSLNSSYGSEHLLKALLHKMKQHKVRAMA 108 (314)
Q Consensus 44 gi~~~ldyl~~lG~~~I~l~Pi~~~~~~~gY~~~d~~~id~~~Gt~~df~~lv~~ah~~Gi~Vil 108 (314)
.+.+.++.++++||++|.|.-+ .++ + .+++.+.+.+.||+|..
T Consensus 16 ~l~~~l~~~~~~Gfd~VEl~~~------~~~-------------~---~~~~~~~l~~~Gl~v~~ 58 (258)
T PRK09989 16 PFIERFAAARKAGFDAVEFLFP------YDY-------------S---TLQIQKQLEQNHLTLAL 58 (258)
T ss_pred CHHHHHHHHHHcCCCEEEECCc------ccC-------------C---HHHHHHHHHHcCCcEEE
Confidence 4678999999999999998421 111 1 34555667789999874
No 374
>TIGR00587 nfo apurinic endonuclease (APN1). All proteins in this family for which functions are known are 5' AP endonculeases that are used in base excision repair and the repair of abasic sites in DNA.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=35.90 E-value=1.3e+02 Score=27.26 Aligned_cols=70 Identities=14% Similarity=0.109 Sum_probs=0.0
Q ss_pred hHHHHHHhhhHHHHcCCCEEEeCCCCCCC---------------------CCCCCCcccCCCcCCCCC-CHHHHHHHHHH
Q 021281 41 WWRNLERKVPDISKSGFTSVWLPPATHSF---------------------APEGYLPQNLYSLNSSYG-SEHLLKALLHK 98 (314)
Q Consensus 41 ~~~gi~~~ldyl~~lG~~~I~l~Pi~~~~---------------------~~~gY~~~d~~~id~~~G-t~~df~~lv~~ 98 (314)
..+.+.+.++..+.+|.+.|-+-|=.... ..-.-.+.+.-.....+| +.+++++|+++
T Consensus 86 sv~~~~~~i~~A~~lga~~vv~H~G~~~~~~~e~~~~~~~~~l~~l~~~~~~v~l~lEN~~~~~~~l~~~~~el~~ll~~ 165 (274)
T TIGR00587 86 SLDVLDEELKRCELLGIMLYNFHPGSALKCSEEEGLDNLIESLNVVIKETKIVTILLENMAGQGSELGRSFEELAYIIKV 165 (274)
T ss_pred HHHHHHHHHHHHHHcCCCEEEECCCCCCCCCHHHHHHHHHHHHHHHHhccCCCEEEEEeCCCCCCccCCCHHHHHHHHHh
Q ss_pred Hhh-CCCEEEEee
Q 021281 99 MKQ-HKVRAMADI 110 (314)
Q Consensus 99 ah~-~Gi~VilD~ 110 (314)
+.. ..++|++|.
T Consensus 166 ~~~~~~lg~~lDt 178 (274)
T TIGR00587 166 IVDKRRIGVCLDT 178 (274)
T ss_pred cCCCCceEEEEEh
No 375
>cd06502 TA_like Low-specificity threonine aldolase (TA). This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). TA catalyzes the conversion of L-threonine or L-allo-threonine to glycine and acetaldehyde in a secondary glycine biosynthetic pathway.
Probab=35.79 E-value=36 Score=31.35 Aligned_cols=24 Identities=21% Similarity=0.063 Sum_probs=21.9
Q ss_pred CHHHHHHHHHHHhhCCCEEEEeee
Q 021281 88 SEHLLKALLHKMKQHKVRAMADIV 111 (314)
Q Consensus 88 t~~df~~lv~~ah~~Gi~VilD~V 111 (314)
+.++++++++.||++|+.||+|-.
T Consensus 144 ~~~~l~~i~~~~~~~~~~livDea 167 (338)
T cd06502 144 PLDELKAISALAKENGLPLHLDGA 167 (338)
T ss_pred CHHHHHHHHHHHHHcCCeEeechH
Confidence 578999999999999999999953
No 376
>COG3661 AguA Alpha-glucuronidase [Carbohydrate transport and metabolism]
Probab=35.79 E-value=1.2e+02 Score=29.91 Aligned_cols=71 Identities=13% Similarity=0.146 Sum_probs=48.8
Q ss_pred EeeCCCCCCchHHHHHHhhhHHHHcCCCEEEeCCCCCCCCCCCCCcccCCCcCCCCCCHHHHHHHHHHHhhCCCEEEEee
Q 021281 31 GFNWESCKHDWWRNLERKVPDISKSGFTSVWLPPATHSFAPEGYLPQNLYSLNSSYGSEHLLKALLHKMKQHKVRAMADI 110 (314)
Q Consensus 31 ~F~w~~~~~g~~~gi~~~ldyl~~lG~~~I~l~Pi~~~~~~~gY~~~d~~~id~~~Gt~~df~~lv~~ah~~Gi~VilD~ 110 (314)
.|.|+.+.. ..+.+.+-..-|+++|+|++-|+-+.-.. .. -|-|+..| ...++.|.+-.+.-||||.|-+
T Consensus 172 Ff~~n~~~~-n~qR~kDYAR~laSiGINg~v~NNVNvk~-~e------~~lit~~f--l~k~aklAdiFR~YGIK~yLsi 241 (684)
T COG3661 172 FFWWNLPGH-NDQRMKDYARALASIGINGTVLNNVNVKK-AE------SYLITAPF--LAKAAKLADIFRPYGIKVYLSI 241 (684)
T ss_pred eeecccccc-chHHHHHHHHHHhhcCcceEEecccccch-hh------hheechHh--HHHHHHHHHHhhhccceEEEEe
Confidence 456665544 34666666677889999999998765332 11 22344333 4678899999999999999965
Q ss_pred e
Q 021281 111 V 111 (314)
Q Consensus 111 V 111 (314)
-
T Consensus 242 n 242 (684)
T COG3661 242 N 242 (684)
T ss_pred c
Confidence 3
No 377
>PF01261 AP_endonuc_2: Xylose isomerase-like TIM barrel; InterPro: IPR012307 This TIM alpha/beta barrel structure is found in xylose isomerase (P19148 from SWISSPROT) and in endonuclease IV (P12638 from SWISSPROT, 3.1.21.2 from EC). This domain is also found in the N termini of bacterial myo-inositol catabolism proteins. These are involved in the myo-inositol catabolism pathway, and is required for growth on myo-inositol in Rhizobium leguminosarum bv. viciae []. ; PDB: 3KWS_B 3DX5_A 3CQH_B 3CQI_A 3CQK_A 3CQJ_B 2G0W_B 1DXI_A 2ZDS_D 3TVA_B ....
Probab=35.72 E-value=96 Score=25.99 Aligned_cols=61 Identities=10% Similarity=0.068 Sum_probs=41.0
Q ss_pred HHHHHHhhhHHHHcCCCEEEeCCCCCCCCCCCCCcccCCCcCCCC-CCHHHHHHHHHHHhhCCCEEEEe
Q 021281 42 WRNLERKVPDISKSGFTSVWLPPATHSFAPEGYLPQNLYSLNSSY-GSEHLLKALLHKMKQHKVRAMAD 109 (314)
Q Consensus 42 ~~gi~~~ldyl~~lG~~~I~l~Pi~~~~~~~gY~~~d~~~id~~~-Gt~~df~~lv~~ah~~Gi~VilD 109 (314)
.+.+.+.++..+.+|+..|.+.|.-.. ...... ....+ -..+.|+++++.|.+.|++|.+.
T Consensus 70 ~~~~~~~i~~a~~lg~~~i~~~~g~~~-~~~~~~------~~~~~~~~~~~l~~l~~~a~~~gv~i~lE 131 (213)
T PF01261_consen 70 LEYLKKAIDLAKRLGAKYIVVHSGRYP-SGPEDD------TEENWERLAENLRELAEIAEEYGVRIALE 131 (213)
T ss_dssp HHHHHHHHHHHHHHTBSEEEEECTTES-SSTTSS------HHHHHHHHHHHHHHHHHHHHHHTSEEEEE
T ss_pred HHHHHHHHHHHHHhCCCceeecCcccc-cccCCC------HHHHHHHHHHHHHHHHhhhhhhcceEEEe
Confidence 889999999999999999998764200 000000 00000 01356899999999999999985
No 378
>COG1168 MalY Bifunctional PLP-dependent enzyme with beta-cystathionase and maltose regulon repressor activities [Amino acid transport and metabolism]
Probab=35.45 E-value=41 Score=32.42 Aligned_cols=23 Identities=22% Similarity=0.345 Sum_probs=21.1
Q ss_pred CHHHHHHHHHHHhhCCCEEEEee
Q 021281 88 SEHLLKALLHKMKQHKVRAMADI 110 (314)
Q Consensus 88 t~~df~~lv~~ah~~Gi~VilD~ 110 (314)
|.++|+.|.+-|.++|+.||-|=
T Consensus 176 t~eeL~~i~elc~kh~v~VISDE 198 (388)
T COG1168 176 TKEELRKIAELCLRHGVRVISDE 198 (388)
T ss_pred cHHHHHHHHHHHHHcCCEEEeec
Confidence 58999999999999999999864
No 379
>TIGR03700 mena_SCO4494 putative menaquinone biosynthesis protein, SCO4494 family. Members of this protein family appear to be involved in menaquinone biosynthesis by an alternate pathway via futalosine, based on close phylogenetic correlation with known markers of the futalosine pathway, gene clustering in many organisms, and paralogy with the SCO4550 protein.
Probab=35.25 E-value=62 Score=30.75 Aligned_cols=34 Identities=9% Similarity=0.084 Sum_probs=27.7
Q ss_pred CcCCCCCCHHHHHHHHHHHhhCCCEEEEeeeecc
Q 021281 81 SLNSSYGSEHLLKALLHKMKQHKVRAMADIVINH 114 (314)
Q Consensus 81 ~id~~~Gt~~df~~lv~~ah~~Gi~VilD~V~NH 114 (314)
.+.|.-.+.++..+.++.||+.||++-.=+.+.|
T Consensus 179 ~i~~~~~~~~~~l~~i~~a~~~Gi~~~sg~i~Gl 212 (351)
T TIGR03700 179 QICPEKISAERWLEIHRTAHELGLKTNATMLYGH 212 (351)
T ss_pred hcCCCCCCHHHHHHHHHHHHHcCCCcceEEEeeC
Confidence 3445444677888999999999999999888887
No 380
>cd03409 Chelatase_Class_II Class II Chelatase: a family of ATP-independent monomeric or homodimeric enzymes that catalyze the insertion of metal into protoporphyrin rings. This family includes protoporphyrin IX ferrochelatase (HemH), sirohydrochlorin ferrochelatase (SirB) and the cobaltochelatases, CbiK and CbiX. HemH and SirB are involved in heme and siroheme biosynthesis, respectively, while the cobaltochelatases are associated with cobalamin biosynthesis. Excluded from this family are the ATP-dependent heterotrimeric chelatases (class I) and the multifunctional homodimeric enzymes with dehydrogenase and chelatase activities (class III).
Probab=35.03 E-value=40 Score=25.20 Aligned_cols=27 Identities=15% Similarity=0.362 Sum_probs=22.7
Q ss_pred HHHHHhhhHHHHcCCCEEEeCCCCCCC
Q 021281 43 RNLERKVPDISKSGFTSVWLPPATHSF 69 (314)
Q Consensus 43 ~gi~~~ldyl~~lG~~~I~l~Pi~~~~ 69 (314)
-.+.+.++.|++.|++.|.+.|++...
T Consensus 45 P~i~~~l~~l~~~g~~~vvvvPl~~~~ 71 (101)
T cd03409 45 PDTEEAIRELAEEGYQRVVIVPLAPVS 71 (101)
T ss_pred CCHHHHHHHHHHcCCCeEEEEeCcccc
Confidence 356778889999999999999998663
No 381
>cd00952 CHBPH_aldolase Trans-o-hydroxybenzylidenepyruvate hydratase-aldolase (HBPHA) and trans-2'-carboxybenzalpyruvate hydratase-aldolase (CBPHA). HBPHA catalyzes HBP to salicyaldehyde and pyruvate. This reaction is part of the degradative pathways for naphthalene and naphthalenesulfonates by bacteria. CBPHA is homologous to HBPHA and catalyzes the cleavage of CBP to 2-carboxylbenzaldehyde and pyruvate during the degradation of phenanthrene. They are member of the DHDPS family of Schiff-base-dependent class I aldolases.
Probab=34.98 E-value=1.2e+02 Score=28.17 Aligned_cols=57 Identities=11% Similarity=0.093 Sum_probs=38.2
Q ss_pred cccchhhcccccccCccccCCc-eeEEEEeeCCCCCCchHHHHHHhhhHHHHcCCCEEEeCCCC
Q 021281 4 TSKGFDETNQQTDLGAVIRNGR-EILFQGFNWESCKHDWWRNLERKVPDISKSGFTSVWLPPAT 66 (314)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~-~~i~q~F~w~~~~~g~~~gi~~~ldyl~~lG~~~I~l~Pi~ 66 (314)
.++|.+|-..-...+-....|+ -||.++-.-+ .+...+.+.+.+++|+++|.++|++
T Consensus 56 ~~Lt~eEr~~v~~~~~~~~~grvpvi~Gv~~~~------t~~ai~~a~~A~~~Gad~vlv~~P~ 113 (309)
T cd00952 56 ATLTWEEKQAFVATVVETVAGRVPVFVGATTLN------TRDTIARTRALLDLGADGTMLGRPM 113 (309)
T ss_pred hhCCHHHHHHHHHHHHHHhCCCCCEEEEeccCC------HHHHHHHHHHHHHhCCCEEEECCCc
Confidence 3455555444443333333442 3566665545 7899999999999999999999975
No 382
>cd05017 SIS_PGI_PMI_1 The members of this protein family contain the SIS (Sugar ISomerase) domain and have both the phosphoglucose isomerase (PGI) and the phosphomannose isomerase (PMI) functions. These functions catalyze the reversible reactions of glucose 6-phosphate to fructose 6-phosphate, and mannose 6-phosphate to fructose 6-phosphate, respectively at an equal rate. This protein contains two SIS domains. This alignment is based on the first SIS domain.
Probab=34.98 E-value=41 Score=26.29 Aligned_cols=56 Identities=11% Similarity=-0.027 Sum_probs=36.4
Q ss_pred hHHHH-cCCCEEEeCCCCCCCCCCCCCcccCCCcCCCCCCHHHHHHHHHHHhhCCCEEEE
Q 021281 50 PDISK-SGFTSVWLPPATHSFAPEGYLPQNLYSLNSSYGSEHLLKALLHKMKQHKVRAMA 108 (314)
Q Consensus 50 dyl~~-lG~~~I~l~Pi~~~~~~~gY~~~d~~~id~~~Gt~~df~~lv~~ah~~Gi~Vil 108 (314)
.++.. +|+..+...+.... ..-...|..-+=+.-|+..+..+.++.|+++|++||.
T Consensus 19 ~~l~~~~~~~~~~~~~~~~~---~~~~~~dl~I~iS~SG~t~e~i~~~~~a~~~g~~iI~ 75 (119)
T cd05017 19 SLLLDEAKIPVYVVKDYTLP---AFVDRKTLVIAVSYSGNTEETLSAVEQAKERGAKIVA 75 (119)
T ss_pred HHHHhccCCCEEEecCccCc---CCCCCCCEEEEEECCCCCHHHHHHHHHHHHCCCEEEE
Confidence 34455 48888876553211 0111223333346778889999999999999999986
No 383
>COG1103 Archaea-specific pyridoxal phosphate-dependent enzymes [General function prediction only]
Probab=34.93 E-value=34 Score=31.67 Aligned_cols=32 Identities=16% Similarity=0.201 Sum_probs=28.5
Q ss_pred CCCcCCCCCCHHHHHHHHHHHhhCCCEEEEee
Q 021281 79 LYSLNSSYGSEHLLKALLHKMKQHKVRAMADI 110 (314)
Q Consensus 79 ~~~id~~~Gt~~df~~lv~~ah~~Gi~VilD~ 110 (314)
...+|..||+..|-+...+-||+.|+.++|.-
T Consensus 162 lTh~Dg~YGNl~Dakkva~ic~e~gvPlllN~ 193 (382)
T COG1103 162 LTHVDGEYGNLADAKKVAKICREYGVPLLLNC 193 (382)
T ss_pred EeccCCCcCCchhhHHHHHHHHHcCCceEeec
Confidence 35678999999999999999999999999844
No 384
>PRK08445 hypothetical protein; Provisional
Probab=34.76 E-value=58 Score=31.00 Aligned_cols=34 Identities=3% Similarity=0.003 Sum_probs=29.3
Q ss_pred cCCCCCCHHHHHHHHHHHhhCCCEEEEeeeeccc
Q 021281 82 LNSSYGSEHLLKALLHKMKQHKVRAMADIVINHR 115 (314)
Q Consensus 82 id~~~Gt~~df~~lv~~ah~~Gi~VilD~V~NH~ 115 (314)
+.|+--|.++..+.++.||+.||++-.=+.+.|.
T Consensus 174 ~~pk~~t~~~~i~~i~~a~~~Gi~~~sg~i~G~~ 207 (348)
T PRK08445 174 IAPKKLDSDRWLEVHRQAHLIGMKSTATMMFGTV 207 (348)
T ss_pred hCCCCCCHHHHHHHHHHHHHcCCeeeeEEEecCC
Confidence 4466667788889999999999999999999975
No 385
>TIGR02539 SepCysS Sep-tRNA:Cys-tRNA synthase. Aminoacylation of tRNA(Cys) with Cys, and cysteine biosynthesis in the process, happens in Methanocaldococcus jannaschii and several other archaea by misacylation of tRNA(Cys) with O-phosphoserine (Sep), followed by modification of the phosphoserine to cysteine. In some species, direct tRNA-cys aminoacylation also occurs but this pathway is required for Cys biosynthesis. Members of this protein catalyze the second step in this two step pathway, using pyridoxal phosphate and a sulfur donor to synthesize Cys from Sep while attached to the tRNA.
Probab=34.75 E-value=37 Score=32.21 Aligned_cols=32 Identities=9% Similarity=0.166 Sum_probs=27.7
Q ss_pred cCCCCCCHHHHHHHHHHHhhCCCEEEEeeeec
Q 021281 82 LNSSYGSEHLLKALLHKMKQHKVRAMADIVIN 113 (314)
Q Consensus 82 id~~~Gt~~df~~lv~~ah~~Gi~VilD~V~N 113 (314)
++...|+..+++++++.||+.|+.||+|-..-
T Consensus 155 p~~~~G~~~~l~~i~~la~~~~~~livDea~~ 186 (370)
T TIGR02539 155 VDGEYGNLPDAGKVAKVCREKGVPLLLNCAYT 186 (370)
T ss_pred CCCCCccccCHHHHHHHHHHcCCeEEEECccc
Confidence 45567899999999999999999999998754
No 386
>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].
Probab=34.65 E-value=1e+02 Score=26.94 Aligned_cols=68 Identities=9% Similarity=0.083 Sum_probs=44.0
Q ss_pred HHHhhhHHHHcCCCEEEeCCCCCCC---------------CCCCCCcccCCCcCCCCCCHHHHHHHHHHHhhCCCEEEEe
Q 021281 45 LERKVPDISKSGFTSVWLPPATHSF---------------APEGYLPQNLYSLNSSYGSEHLLKALLHKMKQHKVRAMAD 109 (314)
Q Consensus 45 i~~~ldyl~~lG~~~I~l~Pi~~~~---------------~~~gY~~~d~~~id~~~Gt~~df~~lv~~ah~~Gi~VilD 109 (314)
-.+.|..+-.-|=.+|---|=|-.- ..-.|.-+| ..+-++-|..||++| |+++||+|.=-
T Consensus 91 P~~vL~EmlRVgr~~IVsFPNFg~W~~R~~l~~~GrmPvt~~lPy~WYd--TPNih~~Ti~DFe~l---c~~~~i~I~~~ 165 (193)
T PF07021_consen 91 PDEVLEEMLRVGRRAIVSFPNFGHWRNRLQLLLRGRMPVTKALPYEWYD--TPNIHLCTIKDFEDL---CRELGIRIEER 165 (193)
T ss_pred HHHHHHHHHHhcCeEEEEecChHHHHHHHHHHhcCCCCCCCCCCCcccC--CCCcccccHHHHHHH---HHHCCCEEEEE
Confidence 3455666666666666554433100 112454443 577889999999988 56779999999
Q ss_pred eeeccccC
Q 021281 110 IVINHRVG 117 (314)
Q Consensus 110 ~V~NH~~~ 117 (314)
++++.-..
T Consensus 166 ~~~~~~~~ 173 (193)
T PF07021_consen 166 VFLDGGRR 173 (193)
T ss_pred EEEcCCCC
Confidence 98886553
No 387
>TIGR00707 argD acetylornithine and succinylornithine aminotransferases. Members of this family may also act on ornithine, like ornithine aminotransferase (EC 2.6.1.13) (see MEDLINE:90337349) and on succinyldiaminopimelate, like N-succinyldiaminopmelate-aminotransferase (EC 2.6.1.17, DapC, an enzyme of lysine biosynthesis) (see MEDLINE:99175097)
Probab=34.64 E-value=1.2e+02 Score=28.47 Aligned_cols=60 Identities=22% Similarity=0.186 Sum_probs=40.6
Q ss_pred hHHHHHHhhhHHHHcCCCEEEeCCCCCCCCCCCCCcccCCCcCCCCCCHHHHHHHHHHHhhCCCEEEEeeeeccccC
Q 021281 41 WWRNLERKVPDISKSGFTSVWLPPATHSFAPEGYLPQNLYSLNSSYGSEHLLKALLHKMKQHKVRAMADIVINHRVG 117 (314)
Q Consensus 41 ~~~gi~~~ldyl~~lG~~~I~l~Pi~~~~~~~gY~~~d~~~id~~~Gt~~df~~lv~~ah~~Gi~VilD~V~NH~~~ 117 (314)
+.+.+++.+. + ....|++.|+... .|.-+ -+.++++++++-|+++|+-||+|-+....+.
T Consensus 159 d~~~l~~~~~---~-~~~~v~~~p~~~~---~g~~~----------~~~~~l~~i~~l~~~~~~~~i~De~~~~~~~ 218 (379)
T TIGR00707 159 DIESLKKAID---D-ETAAVIVEPIQGE---GGVNP----------ASAEFLKALREICKDKDALLIFDEVQTGIGR 218 (379)
T ss_pred CHHHHHHHhh---h-CeeEEEEEccccC---CCCcc----------CCHHHHHHHHHHHHHcCCEEEEeccccCCCc
Confidence 4555555443 2 3568888886432 23111 1578999999999999999999999765543
No 388
>PF04476 DUF556: Protein of unknown function (DUF556); InterPro: IPR007565 The proteins in this entry are functionally uncharacterised.
Probab=34.61 E-value=83 Score=28.32 Aligned_cols=50 Identities=20% Similarity=0.205 Sum_probs=34.4
Q ss_pred hhhHHHHcCCCEEEeCCCCCCCCCCCCCcccCCCcCCCCCCHHHHHHHHHHHhhCCCEEEE
Q 021281 48 KVPDISKSGFTSVWLPPATHSFAPEGYLPQNLYSLNSSYGSEHLLKALLHKMKQHKVRAMA 108 (314)
Q Consensus 48 ~ldyl~~lG~~~I~l~Pi~~~~~~~gY~~~d~~~id~~~Gt~~df~~lv~~ah~~Gi~Vil 108 (314)
.++.+++.||..+-|==..+. |-...|+. +.++|++||+.||++|+.+=|
T Consensus 136 l~~~a~~aG~~gvMlDTa~Kd----g~~L~d~~-------~~~~L~~Fv~~ar~~gL~~aL 185 (235)
T PF04476_consen 136 LPEIAAEAGFDGVMLDTADKD----GGSLFDHL-------SEEELAEFVAQARAHGLMCAL 185 (235)
T ss_pred HHHHHHHcCCCEEEEecccCC----CCchhhcC-------CHHHHHHHHHHHHHccchhhc
Confidence 345567788888776433332 32233333 578999999999999999876
No 389
>PRK07269 cystathionine gamma-synthase; Reviewed
Probab=34.49 E-value=36 Score=32.51 Aligned_cols=27 Identities=7% Similarity=0.068 Sum_probs=23.9
Q ss_pred CCCHHHHHHHHHHHhhCCCEEEEeeee
Q 021281 86 YGSEHLLKALLHKMKQHKVRAMADIVI 112 (314)
Q Consensus 86 ~Gt~~df~~lv~~ah~~Gi~VilD~V~ 112 (314)
.|...|++++++.||++|+.||+|-.+
T Consensus 149 tg~~~di~~I~~la~~~gi~vvvD~t~ 175 (364)
T PRK07269 149 LMVEFDIEKVAKLAHAKGAKVIVDNTF 175 (364)
T ss_pred CCeeeCHHHHHHHHHHcCCEEEEECCC
Confidence 466678999999999999999999984
No 390
>PRK13957 indole-3-glycerol-phosphate synthase; Provisional
Probab=34.14 E-value=48 Score=30.11 Aligned_cols=23 Identities=9% Similarity=0.294 Sum_probs=21.1
Q ss_pred CHHHHHHHHHHHhhCCCEEEEee
Q 021281 88 SEHLLKALLHKMKQHKVRAMADI 110 (314)
Q Consensus 88 t~~df~~lv~~ah~~Gi~VilD~ 110 (314)
+.+++++|++.|+..||.+++.+
T Consensus 136 ~~~~l~~l~~~a~~lGle~LVEV 158 (247)
T PRK13957 136 TPSQIKSFLKHASSLGMDVLVEV 158 (247)
T ss_pred CHHHHHHHHHHHHHcCCceEEEE
Confidence 46789999999999999999987
No 391
>KOG2584 consensus Dihydroorotase and related enzymes [Nucleotide transport and metabolism]
Probab=33.96 E-value=46 Score=32.72 Aligned_cols=98 Identities=12% Similarity=0.141 Sum_probs=61.0
Q ss_pred CHHHHHHHHHHHhhCCCEEEEeeeeccccCCCCCCCCcCcCCCCCCCCCCCCCcccCCCCCccccCCCCCCCCCCCCCCC
Q 021281 88 SEHLLKALLHKMKQHKVRAMADIVINHRVGTTQGHGGKYNRYDGIPLSWDEHAVTSCTGGLGNGSTGDNFHGVPNIDHTQ 167 (314)
Q Consensus 88 t~~df~~lv~~ah~~Gi~VilD~V~NH~~~~~~~~~~~y~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~~ 167 (314)
+.+||-+=.++|-+=|--.|+|+|++-.+..-- ..|..+ ..|-....| |++.---++-.++
T Consensus 84 s~DdF~~GTkAAlaGGtTmiID~vlp~~~~slv---~afe~w----r~~Ad~k~c------------CDyglhv~It~W~ 144 (522)
T KOG2584|consen 84 SVDDFFQGTKAALAGGTTMIIDFVLPDKGTSLV---EAFEKW----REWADPKVC------------CDYGLHVGITWWS 144 (522)
T ss_pred chhhhhcccHHHhcCCceEEEEEecCCCCchHH---HHHHHH----HhhcCCcee------------eeeeeeEeeeecC
Confidence 468999999999999999999999986633211 112211 123222111 3333344556667
Q ss_pred HHHHHHHHHHHHHHHHhCCCCEEEeccCC----CCCHHHHHHHHH
Q 021281 168 HFVRKDIIAWLRWLRNTVGFQDFRFDFAR----GYSAKYVKEYIE 208 (314)
Q Consensus 168 p~v~~~l~~~~~~w~~~~gvDGfRlDaa~----~i~~~f~~~~~~ 208 (314)
+.|.+.|.-.. .+.||.+|.++.|. .+..+.+-+...
T Consensus 145 ~~v~eem~~l~----~ekGvnsF~~fmayk~~~~v~d~~lye~l~ 185 (522)
T KOG2584|consen 145 PSVKEEMEILV----KEKGVNSFKFFMAYKDLYMVRDSELYEALK 185 (522)
T ss_pred cchHHHHHHHh----hhcCcceEEeeeeeccccccCHHHHHHHHH
Confidence 77777665443 69999999999984 344454444443
No 392
>cd02878 GH18_zymocin_alpha Zymocin, alpha subunit. Zymocin is a heterotrimeric enzyme that inhibits yeast cell cycle progression. The zymocin alpha subunit has a chitinase activity that is essential for holoenzyme action from the cell exterior while the gamma subunit contains the intracellular toxin responsible for G1 phase cell cycle arrest. The zymocin alpha and beta subunits are thought to act from the cell's exterior by docking to the cell wall-associated chitin, thus mediating gamma-toxin translocation. The alpha subunit has an eight-stranded TIM barrel fold similar to that of family 18 glycosyl hydrolases such as hevamine, chitolectin, and chitobiase.
Probab=33.86 E-value=49 Score=31.33 Aligned_cols=29 Identities=14% Similarity=0.173 Sum_probs=26.5
Q ss_pred CHHHHHHHHHHHHHHHHhCCCCEEEeccC
Q 021281 167 QHFVRKDIIAWLRWLRNTVGFQDFRFDFA 195 (314)
Q Consensus 167 ~p~v~~~l~~~~~~w~~~~gvDGfRlDaa 195 (314)
+++.|+.+++.+..+++++|+||+-+|--
T Consensus 88 ~~~~R~~Fi~si~~~~~~~~fDGidiDwE 116 (345)
T cd02878 88 KPANRDTFANNVVNFVNKYNLDGVDFDWE 116 (345)
T ss_pred CHHHHHHHHHHHHHHHHHcCCCceeeccc
Confidence 58899999999999999999999999975
No 393
>PRK10150 beta-D-glucuronidase; Provisional
Probab=33.76 E-value=1.5e+02 Score=30.36 Aligned_cols=68 Identities=16% Similarity=0.183 Sum_probs=49.5
Q ss_pred ccCCceeEEEEeeCC--CCCCc---hHHHHHHhhhHHHHcCCCEEEeCCCCCCCCCCCCCcccCCCcCCCCCCHHHHHHH
Q 021281 21 IRNGREILFQGFNWE--SCKHD---WWRNLERKVPDISKSGFTSVWLPPATHSFAPEGYLPQNLYSLNSSYGSEHLLKAL 95 (314)
Q Consensus 21 ~~~~~~~i~q~F~w~--~~~~g---~~~gi~~~ldyl~~lG~~~I~l~Pi~~~~~~~gY~~~d~~~id~~~Gt~~df~~l 95 (314)
+-||+.+.+.++.+. .+..| +-+.+...+.-+|++|+|+|=++ | | |. + .++
T Consensus 286 ~lNG~pv~lrG~~~h~~~~~~G~a~~~~~~~~d~~l~K~~G~N~vR~s--------h-~-p~-----~---------~~~ 341 (604)
T PRK10150 286 LINGKPFYFKGFGKHEDADIRGKGLDEVLNVHDHNLMKWIGANSFRTS--------H-Y-PY-----S---------EEM 341 (604)
T ss_pred EECCEEEEEEeeeccCCCCccCCcCCHHHHHHHHHHHHHCCCCEEEec--------c-C-CC-----C---------HHH
Confidence 678899999998753 22223 56677888999999999999762 1 1 00 0 167
Q ss_pred HHHHhhCCCEEEEeeee
Q 021281 96 LHKMKQHKVRAMADIVI 112 (314)
Q Consensus 96 v~~ah~~Gi~VilD~V~ 112 (314)
.+.|-+.||-|+-++..
T Consensus 342 ~~~cD~~GllV~~E~p~ 358 (604)
T PRK10150 342 LDLADRHGIVVIDETPA 358 (604)
T ss_pred HHHHHhcCcEEEEeccc
Confidence 88899999999988753
No 394
>COG0113 HemB Delta-aminolevulinic acid dehydratase [Coenzyme metabolism]
Probab=33.67 E-value=1.5e+02 Score=27.77 Aligned_cols=77 Identities=14% Similarity=0.276 Sum_probs=52.6
Q ss_pred ceeEEEEeeCCCCCC--------c----hHHHHHHhhhHHHHcCCCEEEeCCCCCC--C---CCCCCCcccCCCcCCCCC
Q 021281 25 REILFQGFNWESCKH--------D----WWRNLERKVPDISKSGFTSVWLPPATHS--F---APEGYLPQNLYSLNSSYG 87 (314)
Q Consensus 25 ~~~i~q~F~w~~~~~--------g----~~~gi~~~ldyl~~lG~~~I~l~Pi~~~--~---~~~gY~~~d~~~id~~~G 87 (314)
++.||-+|.-+-.+. | ..+.+.+.+..+.++|+.+|-|-|+-+. . ++..|++..
T Consensus 31 ~dLI~PiFV~eg~~~~~~I~SMPgv~r~s~d~l~~~~~~~~~lGi~av~LFgvp~~~~Kd~~gs~A~~~~g--------- 101 (330)
T COG0113 31 NDLIYPIFVVEGENIKEEIPSMPGVYRYSLDRLVEEAEELVDLGIPAVILFGVPDDSKKDETGSEAYDPDG--------- 101 (330)
T ss_pred HHeeEeEEEecCCCCccccCCCCCceeccHHHHHHHHHHHHhcCCCEEEEeCCCcccccCcccccccCCCC---------
Confidence 356888887643321 2 6899999999999999999999998744 2 233333321
Q ss_pred CHHHHHHHHHHHhhC--CCEEEEeeeec
Q 021281 88 SEHLLKALLHKMKQH--KVRAMADIVIN 113 (314)
Q Consensus 88 t~~df~~lv~~ah~~--Gi~VilD~V~N 113 (314)
-+++-|+++++. .|-||-|+-+.
T Consensus 102 ---ivqravr~ik~~~p~l~iitDvcLc 126 (330)
T COG0113 102 ---IVQRAVRAIKEAFPELVVITDVCLC 126 (330)
T ss_pred ---hHHHHHHHHHHhCCCeEEEeeeccc
Confidence 244555555543 88999999765
No 395
>PRK14453 chloramphenicol/florfenicol resistance protein; Provisional
Probab=33.55 E-value=1.9e+02 Score=27.65 Aligned_cols=59 Identities=19% Similarity=0.154 Sum_probs=41.1
Q ss_pred hHHHHHHhhhHHHHcC----CCEEEeCCCCCCCCCCCCCcccCCCcCCCCCCHHHHHHHHHHHhhCCCEEEE
Q 021281 41 WWRNLERKVPDISKSG----FTSVWLPPATHSFAPEGYLPQNLYSLNSSYGSEHLLKALLHKMKQHKVRAMA 108 (314)
Q Consensus 41 ~~~gi~~~ldyl~~lG----~~~I~l~Pi~~~~~~~gY~~~d~~~id~~~Gt~~df~~lv~~ah~~Gi~Vil 108 (314)
+-+.+.+-+++++.++ ...|-|.|.++.... ..+|-. =+.++++++.+.+.++|+.|.+
T Consensus 262 s~e~a~~L~~~lk~l~~~~~~~~VnLIPyn~~~~~----~~~~~~-----ps~e~v~~f~~~L~~~Gi~vti 324 (347)
T PRK14453 262 SKEHAEAVVGLLRNRGSWEHLYHVNLIPYNSTDKT----PFKFQS-----SSAGQIKQFCSTLKSAGISVTV 324 (347)
T ss_pred CHHHHHHHHHHHhhccccCCcceEEEecCCCCCCC----CccCCC-----CCHHHHHHHHHHHHHCCCcEEE
Confidence 4566677777777774 578999998765421 111111 2578899999999999999875
No 396
>cd08559 GDPD_periplasmic_GlpQ_like Periplasmic glycerophosphodiester phosphodiesterase domain (GlpQ) and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in bacterial and eukaryotic glycerophosphodiester phosphodiesterase (GP-GDE, EC 3.1.4.46) similar to Escherichia coli periplasmic phosphodiesterase GlpQ. GP-GDEs are involved in glycerol metabolism and catalyze the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols, which are major sources of carbon and phosphate. In E. coli, there are two major G3P uptake systems: Glp and Ugp, which contain genes coding for two different GP-GDEs. GlpQ gene from the glp operon codes for a periplasmic phosphodiesterase GlpQ. GlpQ is a dimeric enzyme that hydrolyzes periplasmic glycerophosphodiesters, such as glycerophosphocholine (GPC), glycerophosphoethanolanmine (GPE), glycerophosphoglycerol (GPG), glycerophosphoinositol (GPI),
Probab=33.24 E-value=74 Score=29.35 Aligned_cols=16 Identities=6% Similarity=0.104 Sum_probs=15.1
Q ss_pred HHHHHHHhhCCCEEEE
Q 021281 93 KALLHKMKQHKVRAMA 108 (314)
Q Consensus 93 ~~lv~~ah~~Gi~Vil 108 (314)
.++|++||++|++|..
T Consensus 246 ~~~v~~a~~~Gl~v~~ 261 (296)
T cd08559 246 TDLVKDAHKAGLLVHP 261 (296)
T ss_pred hHHHHHHHHcCCEEEE
Confidence 6999999999999998
No 397
>PLN02231 alanine transaminase
Probab=33.04 E-value=1.5e+02 Score=29.98 Aligned_cols=63 Identities=17% Similarity=0.160 Sum_probs=43.5
Q ss_pred hHHHHHHhhhHHHHcC--CCEEEeCCCCCCCCCCCCCcccCCCcCCCCCCHHHHHHHHHHHhhCCCEEEEeeeeccccC
Q 021281 41 WWRNLERKVPDISKSG--FTSVWLPPATHSFAPEGYLPQNLYSLNSSYGSEHLLKALLHKMKQHKVRAMADIVINHRVG 117 (314)
Q Consensus 41 ~~~gi~~~ldyl~~lG--~~~I~l~Pi~~~~~~~gY~~~d~~~id~~~Gt~~df~~lv~~ah~~Gi~VilD~V~NH~~~ 117 (314)
+++.+++.+...+.-| +..|.+.-+ .++ .|. +. +.++++++++-|+++|+-||.|=|+.+...
T Consensus 254 d~~~Le~~l~~~~~~~~~~k~ivl~nP-~NP--TG~-vl----------s~e~l~~Iv~~a~~~~l~lI~DEvY~~l~y 318 (534)
T PLN02231 254 EISELKKQLEDARSKGITVRALVVINP-GNP--TGQ-VL----------AEENQRDIVEFCKQEGLVLLADEVYQENVY 318 (534)
T ss_pred CHHHHHHHHHHHhhcCCCeEEEEEeCC-CCC--CCc-CC----------CHHHHHHHHHHHHHcCCEEEEEccchhccc
Confidence 6777777776655544 455555322 222 231 11 579999999999999999999999987654
No 398
>PRK13397 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=32.94 E-value=2.2e+02 Score=25.92 Aligned_cols=59 Identities=15% Similarity=0.169 Sum_probs=39.8
Q ss_pred hHHHHHHhhhHHHHcCCCEEEeCCCCCCCCCCCCCcccCCCcCCCCC-CHHHHHHHHHHHhhCCCEEEEee
Q 021281 41 WWRNLERKVPDISKSGFTSVWLPPATHSFAPEGYLPQNLYSLNSSYG-SEHLLKALLHKMKQHKVRAMADI 110 (314)
Q Consensus 41 ~~~gi~~~ldyl~~lG~~~I~l~Pi~~~~~~~gY~~~d~~~id~~~G-t~~df~~lv~~ah~~Gi~VilD~ 110 (314)
.-+-+.+....++++|++.|.=. .|+ +. ..+..--| +.+.|+.|.+.|++.||.++-++
T Consensus 27 s~e~~~~~a~~~~~~g~~~~r~g-~~k--------pR--ts~~sf~G~G~~gl~~L~~~~~~~Gl~~~Tev 86 (250)
T PRK13397 27 SYDHIRLAASSAKKLGYNYFRGG-AYK--------PR--TSAASFQGLGLQGIRYLHEVCQEFGLLSVSEI 86 (250)
T ss_pred CHHHHHHHHHHHHHcCCCEEEec-ccC--------CC--CCCcccCCCCHHHHHHHHHHHHHcCCCEEEee
Confidence 45666666677999999666522 222 21 22222222 36799999999999999999976
No 399
>PRK09064 5-aminolevulinate synthase; Validated
Probab=32.85 E-value=74 Score=30.45 Aligned_cols=27 Identities=11% Similarity=0.042 Sum_probs=22.3
Q ss_pred CCHHHHHHHHHHHhhCCCEEEEeeeec
Q 021281 87 GSEHLLKALLHKMKQHKVRAMADIVIN 113 (314)
Q Consensus 87 Gt~~df~~lv~~ah~~Gi~VilD~V~N 113 (314)
|+..+++++++-|+++|+-||+|=+.-
T Consensus 192 G~~~~l~~i~~l~~~~~~~livDEa~~ 218 (407)
T PRK09064 192 GDIAPIAEICDLADKYNALTYLDEVHA 218 (407)
T ss_pred ccccCHHHHHHHHHHcCCEEEEECCCc
Confidence 444558899999999999999998864
No 400
>COG3934 Endo-beta-mannanase [Carbohydrate transport and metabolism]
Probab=32.79 E-value=1.1e+02 Score=30.68 Aligned_cols=71 Identities=13% Similarity=0.099 Sum_probs=49.9
Q ss_pred HHHHHhhhHHHHcCCCEEEeCCCCCCCCCCCCCcccCCCcCCCCCC-HHHHHHHHHHHhhCCCEEEEeeeec--cccCCC
Q 021281 43 RNLERKVPDISKSGFTSVWLPPATHSFAPEGYLPQNLYSLNSSYGS-EHLLKALLHKMKQHKVRAMADIVIN--HRVGTT 119 (314)
Q Consensus 43 ~gi~~~ldyl~~lG~~~I~l~Pi~~~~~~~gY~~~d~~~id~~~Gt-~~df~~lv~~ah~~Gi~VilD~V~N--H~~~~~ 119 (314)
+.|.+-|+-.+.+|++.+=+. |....+ ..|-+ =...-|+ .+-+..+++.|...+|||++=++.+ |||..+
T Consensus 26 ~ei~~dle~a~~vg~k~lR~f-iLDgEd-----c~d~~-G~~na~s~~~y~~~fla~a~~l~lkvlitlivg~~hmgg~N 98 (587)
T COG3934 26 REIKADLEPAGFVGVKDLRLF-ILDGED-----CRDKE-GYRNAGSNVWYAAWFLAPAGYLDLKVLITLIVGLKHMGGTN 98 (587)
T ss_pred hhhhcccccccCccceeEEEE-EecCcc-----hhhhh-ceecccccHHHHHHHhhhcccCcceEEEEEeecccccCcce
Confidence 466677777888999888766 544221 11100 1122344 6778899999999999999999999 999875
Q ss_pred C
Q 021281 120 Q 120 (314)
Q Consensus 120 ~ 120 (314)
+
T Consensus 99 w 99 (587)
T COG3934 99 W 99 (587)
T ss_pred e
Confidence 4
No 401
>cd00958 DhnA Class I fructose-1,6-bisphosphate (FBP) aldolases of the archaeal type (DhnA homologs) found in bacteria and archaea. Catalysis of the enzymes proceeds via a Schiff-base mechanism like other class I aldolases, although this subfamily is clearly divergent based on sequence similarity to other class I and class II (metal dependent) aldolase subfamilies.
Probab=32.78 E-value=47 Score=29.35 Aligned_cols=21 Identities=10% Similarity=0.028 Sum_probs=19.0
Q ss_pred HHHHHHHHHHhhCCCEEEEee
Q 021281 90 HLLKALLHKMKQHKVRAMADI 110 (314)
Q Consensus 90 ~df~~lv~~ah~~Gi~VilD~ 110 (314)
++++++++.||+.|+++|+|.
T Consensus 109 ~~i~~v~~~~~~~g~~~iie~ 129 (235)
T cd00958 109 EELARVAAEAHKYGLPLIAWM 129 (235)
T ss_pred HHHHHHHHHHHHcCCCEEEEE
Confidence 479999999999999999965
No 402
>PTZ00413 lipoate synthase; Provisional
Probab=32.75 E-value=1.7e+02 Score=28.39 Aligned_cols=61 Identities=11% Similarity=0.078 Sum_probs=45.0
Q ss_pred hHHHHHHhhhHHHHcCCCEEEeCCCCCCCCCCCCCcccCCCcCCCCCCHHHHHHHHHHHhhCCCEEEEe
Q 021281 41 WWRNLERKVPDISKSGFTSVWLPPATHSFAPEGYLPQNLYSLNSSYGSEHLLKALLHKMKQHKVRAMAD 109 (314)
Q Consensus 41 ~~~gi~~~ldyl~~lG~~~I~l~Pi~~~~~~~gY~~~d~~~id~~~Gt~~df~~lv~~ah~~Gi~VilD 109 (314)
+.+.+.+.+..|+++|++.|=|.-.... +..-+.+ .+|=++++|+.+-+.+-+.|.+-+.-
T Consensus 308 T~eEvie~m~dLrelGVDivtIGQYL~P-s~~h~~V-------~~yv~P~~F~~~~~~a~~~Gf~~v~s 368 (398)
T PTZ00413 308 TEEEVRQTLRDLRTAGVSAVTLGQYLQP-TKTRLKV-------SRYAHPKEFEMWEEEAMKMGFLYCAS 368 (398)
T ss_pred CHHHHHHHHHHHHHcCCcEEeeccccCC-CcccCCc-------eeccCHHHHHHHHHHHHHcCCceEEe
Confidence 6899999999999999998866432221 1111222 34558999999999999999987763
No 403
>PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ]. Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A.
Probab=32.68 E-value=1.1e+02 Score=25.90 Aligned_cols=67 Identities=18% Similarity=0.206 Sum_probs=32.2
Q ss_pred hHHHHHHhhhHHHHcCCCEEEeCCCCCCCCCCCCCcccCCCcCCCCCCHHHHHHHHHHHhhCCCEEEEeeeec
Q 021281 41 WWRNLERKVPDISKSGFTSVWLPPATHSFAPEGYLPQNLYSLNSSYGSEHLLKALLHKMKQHKVRAMADIVIN 113 (314)
Q Consensus 41 ~~~gi~~~ldyl~~lG~~~I~l~Pi~~~~~~~gY~~~d~~~id~~~Gt~~df~~lv~~ah~~Gi~VilD~V~N 113 (314)
|+..+...+..- .. ++.|.++|++-.++| .-.+-|.+...+.. -.+.+|++.+.+.--.|++=+.=|
T Consensus 56 D~~~~~~~~~~~-~~-~D~vFlSPPWGGp~Y---~~~~~fdL~~~~~p-~~~~~l~~~~~~~t~nv~l~LPRn 122 (163)
T PF09445_consen 56 DFFELLKRLKSN-KI-FDVVFLSPPWGGPSY---SKKDVFDLEKSMQP-FNLEDLLKAARKITPNVVLFLPRN 122 (163)
T ss_dssp -HHHHGGGB--------SEEEE---BSSGGG---GGSSSB-TTTSSSS---HHHHHHHHHHH-S-EEEEEETT
T ss_pred CHHHHHhhcccc-cc-ccEEEECCCCCCccc---cccCccCHHHccCC-CCHHHHHHHHHhhCCCEEEEeCCC
Confidence 455544443321 12 899999999977644 33444556444443 347777777777777777755433
No 404
>cd00617 Tnase_like Tryptophanase family (Tnase). This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to tryptophanase (Tnase) and tyrosine phenol-lyase (TPL). Tnase and TPL are active as tetramers and catalyze beta-elimination reactions. Tnase catalyzes degradation of L-tryptophan to yield indole, pyruvate and ammonia and TPL catalyzes degradation of L-tyrosine to yield phenol, pyruvate and ammonia.
Probab=32.59 E-value=49 Score=32.52 Aligned_cols=24 Identities=13% Similarity=0.083 Sum_probs=22.4
Q ss_pred CHHHHHHHHHHHhhCCCEEEEeee
Q 021281 88 SEHLLKALLHKMKQHKVRAMADIV 111 (314)
Q Consensus 88 t~~df~~lv~~ah~~Gi~VilD~V 111 (314)
++++++++.+-|+++||.||.|-.
T Consensus 171 s~~~l~~i~eia~~~gi~li~DaA 194 (431)
T cd00617 171 SMANLREVRELAHKYGIPVVLDAA 194 (431)
T ss_pred CHHHHHHHHHHHHHcCCEEEEEch
Confidence 468999999999999999999998
No 405
>PRK09997 hydroxypyruvate isomerase; Provisional
Probab=32.56 E-value=67 Score=28.72 Aligned_cols=65 Identities=9% Similarity=0.155 Sum_probs=40.2
Q ss_pred hHHHHHHhhhHHHHcCCCEEEeCCCCCCCCCCCCCcccCCCcCCCCCCHHHHHHHHHHHhhCCCEEEEeeeecc
Q 021281 41 WWRNLERKVPDISKSGFTSVWLPPATHSFAPEGYLPQNLYSLNSSYGSEHLLKALLHKMKQHKVRAMADIVINH 114 (314)
Q Consensus 41 ~~~gi~~~ldyl~~lG~~~I~l~Pi~~~~~~~gY~~~d~~~id~~~Gt~~df~~lv~~ah~~Gi~VilD~V~NH 114 (314)
..+.+.+.++..+.+|++.|-+.+-.. ..++..... .--..+.|+++.+.|.+.||++.+.-+ ||
T Consensus 83 ~~~~~~~~i~~a~~lga~~i~~~~g~~---~~~~~~~~~-----~~~~~~~l~~l~~~a~~~Gv~l~lE~~-n~ 147 (258)
T PRK09997 83 FRDGVAAAIRYARALGNKKINCLVGKT---PAGFSSEQI-----HATLVENLRYAANMLMKEDILLLIEPI-NH 147 (258)
T ss_pred HHHHHHHHHHHHHHhCCCEEEECCCCC---CCCCCHHHH-----HHHHHHHHHHHHHHHHHcCCEEEEEeC-CC
Confidence 356688899999999999987643110 011111000 000125578888889999999998754 44
No 406
>PRK07811 cystathionine gamma-synthase; Provisional
Probab=32.41 E-value=40 Score=32.45 Aligned_cols=29 Identities=14% Similarity=0.039 Sum_probs=25.4
Q ss_pred CCCCHHHHHHHHHHHhhCCCEEEEeeeec
Q 021281 85 SYGSEHLLKALLHKMKQHKVRAMADIVIN 113 (314)
Q Consensus 85 ~~Gt~~df~~lv~~ah~~Gi~VilD~V~N 113 (314)
-.|+..+++++++.||++|+.||+|-+.-
T Consensus 158 Ptg~~~dl~~I~~la~~~gi~lIvD~a~a 186 (388)
T PRK07811 158 PLLSITDIAALAELAHDAGAKVVVDNTFA 186 (388)
T ss_pred CcceecCHHHHHHHHHHcCCEEEEECCCC
Confidence 35788999999999999999999998753
No 407
>PF00490 ALAD: Delta-aminolevulinic acid dehydratase; InterPro: IPR001731 Tetrapyrroles are large macrocyclic compounds derived from a common biosynthetic pathway []. The end-product, uroporphyrinogen III, is used to synthesise a number of important molecules, including vitamin B12, haem, sirohaem, chlorophyll, coenzyme F430 and phytochromobilin []. The first stage in tetrapyrrole synthesis is the synthesis of 5-aminoaevulinic acid ALA via two possible routes: (1) condensation of succinyl CoA and glycine (C4 pathway) using ALA synthase (2.3.1.37 from EC), or (2) decarboxylation of glutamate (C5 pathway) via three different enzymes, glutamyl-tRNA synthetase (6.1.1.17 from EC) to charge a tRNA with glutamate, glutamyl-tRNA reductase (1.2.1.70 from EC) to reduce glutamyl-tRNA to glutamate-1-semialdehyde (GSA), and GSA aminotransferase (5.4.3.8 from EC) to catalyse a transamination reaction to produce ALA. The second stage is to convert ALA to uroporphyrinogen III, the first macrocyclic tetrapyrrolic structure in the pathway. This is achieved by the action of three enzymes in one common pathway: porphobilinogen (PBG) synthase (or ALA dehydratase, 4.2.1.24 from EC) to condense two ALA molecules to generate porphobilinogen; hydroxymethylbilane synthase (or PBG deaminase, 2.5.1.61 from EC) to polymerise four PBG molecules into preuroporphyrinogen (tetrapyrrole structure); and uroporphyrinogen III synthase (4.2.1.75 from EC) to link two pyrrole units together (rings A and D) to yield uroporphyrinogen III. Uroporphyrinogen III is the first branch point of the pathway. To synthesise cobalamin (vitamin B12), sirohaem, and coenzyme F430, uroporphyrinogen III needs to be converted into precorrin-2 by the action of uroporphyrinogen III methyltransferase (2.1.1.107 from EC). To synthesise haem and chlorophyll, uroporphyrinogen III needs to be decarboxylated into coproporphyrinogen III by the action of uroporphyrinogen III decarboxylase (4.1.1.37 from EC) []. This entry represents porphobilinogen (PBG) synthase (PBGS, or 5-aminoaevulinic acid dehydratase, or ALAD, 4.2.1.24 from EC), which functions during the second stage of tetrapyrrole biosynthesis. This enzyme catalyses a Knorr-type condensation reaction between two molecules of ALA to generate porphobilinogen, the pyrrolic building block used in later steps []. The structure of the enzyme is based on a TIM barrel topology made up of eight identical subunits, where each subunit binds to a metal ion that is essential for activity, usually zinc (in yeast, mammals and certain bacteria) or magnesium (in plants and other bacteria). A lysine has been implicated in the catalytic mechanism []. The lack of PBGS enzyme causes a rare porphyric disorder known as ALAD porphyria, which appears to involve conformational changes in the enzyme [.; GO: 0004655 porphobilinogen synthase activity, 0046872 metal ion binding, 0033014 tetrapyrrole biosynthetic process; PDB: 2C1H_A 1W1Z_A 1GZG_B 1W5O_B 1W5Q_B 2C18_A 1B4K_A 2C19_B 1W56_B 2C13_B ....
Probab=32.35 E-value=95 Score=29.29 Aligned_cols=81 Identities=16% Similarity=0.242 Sum_probs=49.9
Q ss_pred ceeEEEEeeCCCCCC--------c----hHHHHHHhhhHHHHcCCCEEEeCCCCCCC--CCCCCCcccCCCcCCCCCCHH
Q 021281 25 REILFQGFNWESCKH--------D----WWRNLERKVPDISKSGFTSVWLPPATHSF--APEGYLPQNLYSLNSSYGSEH 90 (314)
Q Consensus 25 ~~~i~q~F~w~~~~~--------g----~~~gi~~~ldyl~~lG~~~I~l~Pi~~~~--~~~gY~~~d~~~id~~~Gt~~ 90 (314)
+..||=+|.-+-.+. | ..+.+.+.+..+.++|+.+|-|-|+.+.. ...|-.. .++. .
T Consensus 27 ~dLI~PlFV~eg~~~~~~I~smPg~~r~sid~l~~~v~~~~~~GI~~v~lFgvi~~~~Kd~~gs~a-----~~~~----g 97 (324)
T PF00490_consen 27 SDLIYPLFVVEGENEKEPISSMPGVYRYSIDSLVKEVEEAVDLGIRAVILFGVIDPSKKDEEGSEA-----YNPD----G 97 (324)
T ss_dssp GGEEEEEEEESSSSSEEEETTSTTEEEEEHHHHHHHHHHHHHTT--EEEEEEE-SCSC-BSS-GGG-----GSTT----S
T ss_pred HHeEEEEEEecCCCcceeccCCCCeeeeCHHHHHHHHHHHHHCCCCEEEEEeeCCcccCCcchhcc-----cCCC----C
Confidence 467888888654442 2 79999999999999999999998884322 2222111 1111 1
Q ss_pred HHHHHHHHHhh--CCCEEEEeeeecc
Q 021281 91 LLKALLHKMKQ--HKVRAMADIVINH 114 (314)
Q Consensus 91 df~~lv~~ah~--~Gi~VilD~V~NH 114 (314)
-+.+.|+++++ -.|-||.|+-+-.
T Consensus 98 ~v~~air~iK~~~pdl~vi~Dvclc~ 123 (324)
T PF00490_consen 98 LVQRAIRAIKKAFPDLLVITDVCLCE 123 (324)
T ss_dssp HHHHHHHHHHHHSTTSEEEEEE-STT
T ss_pred hHHHHHHHHHHhCCCcEEEEeccccc
Confidence 24444444444 3799999997763
No 408
>TIGR01037 pyrD_sub1_fam dihydroorotate dehydrogenase (subfamily 1) family protein. This family includes subfamily 1 dihydroorotate dehydrogenases while excluding the closely related subfamily 2 (TIGR01036). This family also includes a number of uncharacterized proteins and a domain of dihydropyrimidine dehydrogenase. The uncharacterized proteins might all be dihydroorotate dehydrogenase.
Probab=32.30 E-value=2.9e+02 Score=25.35 Aligned_cols=71 Identities=10% Similarity=0.040 Sum_probs=45.9
Q ss_pred eeEEEEeeCCCCCCchHHHHHHhhhHHHHc--CCCEEEeCCCCCCCCCCCCCcccCCCcCCCCCCHHHHHHHHHHHhhC-
Q 021281 26 EILFQGFNWESCKHDWWRNLERKVPDISKS--GFTSVWLPPATHSFAPEGYLPQNLYSLNSSYGSEHLLKALLHKMKQH- 102 (314)
Q Consensus 26 ~~i~q~F~w~~~~~g~~~gi~~~ldyl~~l--G~~~I~l~Pi~~~~~~~gY~~~d~~~id~~~Gt~~df~~lv~~ah~~- 102 (314)
-+|+|++.-+ -+.+.+....+++. +++.|-|+ +-++...|+. +.-.++++.+.++|+++++.
T Consensus 92 pl~~qi~g~~------~~~~~~~a~~~~~~~~~~d~ielN--~~cP~~~~~g-------~~l~~~~~~~~eiv~~vr~~~ 156 (300)
T TIGR01037 92 PLIASVYGSS------VEEFAEVAEKLEKAPPYVDAYELN--LSCPHVKGGG-------IAIGQDPELSADVVKAVKDKT 156 (300)
T ss_pred cEEEEeecCC------HHHHHHHHHHHHhccCccCEEEEE--CCCCCCCCCc-------cccccCHHHHHHHHHHHHHhc
Confidence 4899998644 67777777788876 39999997 2222222211 11223566788888888765
Q ss_pred CCEEEEeee
Q 021281 103 KVRAMADIV 111 (314)
Q Consensus 103 Gi~VilD~V 111 (314)
++.|++-+-
T Consensus 157 ~~pv~vKi~ 165 (300)
T TIGR01037 157 DVPVFAKLS 165 (300)
T ss_pred CCCEEEECC
Confidence 777777664
No 409
>PF01565 FAD_binding_4: FAD binding domain This is only a subset of the Pfam family; InterPro: IPR006094 Various enzymes use FAD as a co-factor, most of these enzymes are oxygen-dependent oxidoreductases, containing a covalently bound FAD group which is attached to a histidine via an 8-alpha-(N3-histidyl)-riboflavin linkage. One of the enzymes Vanillyl-alcohol oxidase (VAO, 1.1.3.38 from EC) has a solved structure, the alignment includes the FAD binding site, called the PP-loop, between residues 99-110 []. The FAD molecule is covalently bound in the known structure, however the residue that links to the FAD is not in the alignment. VAO catalyses the oxidation of a wide variety of substrates, ranging from aromatic amines to 4-alkylphenols. ; GO: 0008762 UDP-N-acetylmuramate dehydrogenase activity, 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZR6_A 3HSU_A 2AXR_A 3D2J_A 3D2H_A 3FW9_A 3FW8_A 3FW7_A 3GSY_A 3FWA_A ....
Probab=32.27 E-value=59 Score=25.87 Aligned_cols=21 Identities=14% Similarity=0.135 Sum_probs=20.0
Q ss_pred CHHHHHHHHHHHhhCCCEEEE
Q 021281 88 SEHLLKALLHKMKQHKVRAMA 108 (314)
Q Consensus 88 t~~df~~lv~~ah~~Gi~Vil 108 (314)
+.+|++++|+.|++++++|.+
T Consensus 9 s~~ev~~~v~~a~~~~~~v~~ 29 (139)
T PF01565_consen 9 SVEEVQAIVKFANENGVPVRV 29 (139)
T ss_dssp SHHHHHHHHHHHHHTTSEEEE
T ss_pred CHHHHHHHHHHHHHcCCcEEE
Confidence 689999999999999999998
No 410
>PRK05958 8-amino-7-oxononanoate synthase; Reviewed
Probab=32.17 E-value=38 Score=31.83 Aligned_cols=28 Identities=18% Similarity=0.145 Sum_probs=24.6
Q ss_pred CCCCHHHHHHHHHHHhhCCCEEEEeeee
Q 021281 85 SYGSEHLLKALLHKMKQHKVRAMADIVI 112 (314)
Q Consensus 85 ~~Gt~~df~~lv~~ah~~Gi~VilD~V~ 112 (314)
..|+..+++++++.||++|+.||+|-+.
T Consensus 180 ~~G~~~~l~~i~~ia~~~~~~li~De~~ 207 (385)
T PRK05958 180 MDGDLAPLAELVALARRHGAWLLVDEAH 207 (385)
T ss_pred CCCCcCCHHHHHHHHHHhCCEEEEECcc
Confidence 4466678999999999999999999986
No 411
>cd07491 Peptidases_S8_7 Peptidase S8 family domain, uncharacterized subfamily 7. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=32.12 E-value=2.8e+02 Score=24.81 Aligned_cols=69 Identities=3% Similarity=-0.116 Sum_probs=47.4
Q ss_pred eEEEEeeCCCCC----CchHHHHHHhhhHHHHcCCCEEEeCCCCCCCCCCCCCcccCCCcCCCCCCHHHHHHHHHHHhhC
Q 021281 27 ILFQGFNWESCK----HDWWRNLERKVPDISKSGFTSVWLPPATHSFAPEGYLPQNLYSLNSSYGSEHLLKALLHKMKQH 102 (314)
Q Consensus 27 ~i~q~F~w~~~~----~g~~~gi~~~ldyl~~lG~~~I~l~Pi~~~~~~~gY~~~d~~~id~~~Gt~~df~~lv~~ah~~ 102 (314)
+.+++|...... ..+-..+.+.+++..+.|++-|-++= |.....+. -...+.|+++|++|.++
T Consensus 69 ~~~kv~~~~~~~~~~~~~~~~~i~~Ai~~Ai~~gadIIn~S~--------g~~~~~~~-----~~~~~~l~~ai~~A~~~ 135 (247)
T cd07491 69 YVIKLEDRPSPDSNKRSITPQSAAKAIEAAVEKKVDIISMSW--------TIKKPEDN-----DNDINELENAIKEALDR 135 (247)
T ss_pred EEEEecccCCCCCcccccCHHHHHHHHHHHHHCCCcEEEeee--------eccccccc-----ccchHHHHHHHHHHHhC
Confidence 477888755432 12667899999999999999888762 11111000 12357899999999999
Q ss_pred CCEEEE
Q 021281 103 KVRAMA 108 (314)
Q Consensus 103 Gi~Vil 108 (314)
|+-|+.
T Consensus 136 Gilvva 141 (247)
T cd07491 136 GILLFC 141 (247)
T ss_pred CeEEEE
Confidence 987775
No 412
>PRK09283 delta-aminolevulinic acid dehydratase; Validated
Probab=32.04 E-value=3.1e+02 Score=25.95 Aligned_cols=81 Identities=14% Similarity=0.234 Sum_probs=53.5
Q ss_pred ceeEEEEeeCCCCCC--------c----hHHHHHHhhhHHHHcCCCEEEeCCCCCCCCCCCCCcccCCCcCCCCCCHHHH
Q 021281 25 REILFQGFNWESCKH--------D----WWRNLERKVPDISKSGFTSVWLPPATHSFAPEGYLPQNLYSLNSSYGSEHLL 92 (314)
Q Consensus 25 ~~~i~q~F~w~~~~~--------g----~~~gi~~~ldyl~~lG~~~I~l~Pi~~~~~~~gY~~~d~~~id~~~Gt~~df 92 (314)
++.||=+|.-+-.+. | ..+.+.+.+..+.++|+++|-|-|+-+.....|- .+.+|. |- +
T Consensus 29 ~dlI~PiFV~eg~~~~~~I~smPg~~r~s~d~l~~~v~~~~~~Gi~av~LFgv~~~Kd~~gs-----~A~~~~-g~---v 99 (323)
T PRK09283 29 NDLIYPLFVVEGENEREEIPSMPGVYRLSIDLLVKEAEEAVELGIPAVALFGVPELKDEDGS-----EAYNPD-GL---V 99 (323)
T ss_pred HHceeeEEEecCCCCccccCCCCCceeeCHHHHHHHHHHHHHCCCCEEEEeCcCCCCCcccc-----cccCCC-CH---H
Confidence 467888898754331 2 7899999999999999999999999322222221 222222 21 3
Q ss_pred HHHHHHHhh--CCCEEEEeeeecc
Q 021281 93 KALLHKMKQ--HKVRAMADIVINH 114 (314)
Q Consensus 93 ~~lv~~ah~--~Gi~VilD~V~NH 114 (314)
.+.|+++++ -.|-||-|+-+..
T Consensus 100 ~rair~iK~~~p~l~vi~DVcLc~ 123 (323)
T PRK09283 100 QRAIRAIKKAFPELGVITDVCLDE 123 (323)
T ss_pred HHHHHHHHHhCCCcEEEEeeeccC
Confidence 444444444 4899999998763
No 413
>PRK07568 aspartate aminotransferase; Provisional
Probab=32.02 E-value=50 Score=31.37 Aligned_cols=29 Identities=24% Similarity=0.266 Sum_probs=25.6
Q ss_pred CHHHHHHHHHHHhhCCCEEEEeeeecccc
Q 021281 88 SEHLLKALLHKMKQHKVRAMADIVINHRV 116 (314)
Q Consensus 88 t~~df~~lv~~ah~~Gi~VilD~V~NH~~ 116 (314)
+.++++++++.||++|+.||.|-++....
T Consensus 180 ~~~~~~~i~~~~~~~~~~ii~De~y~~~~ 208 (397)
T PRK07568 180 TKEELEMLAEIAKKHDLFLISDEVYREFV 208 (397)
T ss_pred CHHHHHHHHHHHHHCCcEEEEeccchhcc
Confidence 46899999999999999999999987554
No 414
>cd03320 OSBS o-Succinylbenzoate synthase (OSBS) catalyzes the conversion of 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate (SHCHC) to 4-(2'-carboxyphenyl)-4-oxobutyrate (o-succinylbenzoate or OSB), a reaction in the menaquinone biosynthetic pathway. Menaquinone is an essential cofactor for anaerobic growth in eubacteria and some archaea. OSBS belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=32.00 E-value=1.4e+02 Score=26.95 Aligned_cols=68 Identities=9% Similarity=0.032 Sum_probs=45.1
Q ss_pred HHHHHHhhhHHHHcCCCEEEe----------------CCCCCCCCCC---C------CCcccCCCcCC-CCCCHHHHHHH
Q 021281 42 WRNLERKVPDISKSGFTSVWL----------------PPATHSFAPE---G------YLPQNLYSLNS-SYGSEHLLKAL 95 (314)
Q Consensus 42 ~~gi~~~ldyl~~lG~~~I~l----------------~Pi~~~~~~~---g------Y~~~d~~~id~-~~Gt~~df~~l 95 (314)
.+...+.+..|++.++..|.= .||.-.-+-+ . ....|...+++ +.|+....+++
T Consensus 140 ~~~A~~~~~~l~~~~i~~iEqP~~~~d~~~~~~l~~~~PIa~dEs~~~~~~~~~~~~~~~~d~v~~k~~~~GGit~~~~i 219 (263)
T cd03320 140 LEEALAFLEALAAGRIEYIEQPLPPDDLAELRRLAAGVPIALDESLRRLDDPLALAAAGALGALVLKPALLGGPRALLEL 219 (263)
T ss_pred HHHHHHHHHhhcccCCceEECCCChHHHHHHHHhhcCCCeeeCCccccccCHHHHHhcCCCCEEEECchhcCCHHHHHHH
Confidence 677777778888888776651 1222111100 0 12344555665 57999999999
Q ss_pred HHHHhhCCCEEEEe
Q 021281 96 LHKMKQHKVRAMAD 109 (314)
Q Consensus 96 v~~ah~~Gi~VilD 109 (314)
++.|+++|+++++-
T Consensus 220 ~~~a~~~gi~~~~~ 233 (263)
T cd03320 220 AEEARARGIPAVVS 233 (263)
T ss_pred HHHHHHcCCCEEEE
Confidence 99999999999883
No 415
>PRK07812 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=32.00 E-value=39 Score=33.22 Aligned_cols=83 Identities=10% Similarity=0.014 Sum_probs=50.0
Q ss_pred ccCCceeEEEEeeCCCCCCchHHHHHHhhh-HHHHcCCCEEEeC-CCCCCC-----CCCCCCcccCCCcCCCCCCHHHHH
Q 021281 21 IRNGREILFQGFNWESCKHDWWRNLERKVP-DISKSGFTSVWLP-PATHSF-----APEGYLPQNLYSLNSSYGSEHLLK 93 (314)
Q Consensus 21 ~~~~~~~i~q~F~w~~~~~g~~~gi~~~ld-yl~~lG~~~I~l~-Pi~~~~-----~~~gY~~~d~~~id~~~Gt~~df~ 93 (314)
..+|+.||..... +.+....+. .++..|+..+++. |. ... -...-..+=.-.+..-.|...+++
T Consensus 105 l~~Gd~Vv~~~~~--------y~~t~~~~~~~l~~~Gi~v~~vdd~~-d~e~l~~ai~~~tklV~ie~~sNp~G~v~Dl~ 175 (436)
T PRK07812 105 AGAGDHIVSSPRL--------YGGTYNLFHYTLPKLGIEVSFVEDPD-DLDAWRAAVRPNTKAFFAETISNPQIDVLDIP 175 (436)
T ss_pred hCCCCEEEEeCCc--------chHHHHHHHHHhhcCeEEEEEECCCC-CHHHHHHhCCCCCeEEEEECCCCCCCeecCHH
Confidence 4567777776543 223333333 3566888887774 31 100 011111111223445578899999
Q ss_pred HHHHHHhhCCCEEEEeeee
Q 021281 94 ALLHKMKQHKVRAMADIVI 112 (314)
Q Consensus 94 ~lv~~ah~~Gi~VilD~V~ 112 (314)
++++.||++|+.||+|-..
T Consensus 176 ~I~~la~~~gi~liVD~t~ 194 (436)
T PRK07812 176 GVAEVAHEAGVPLIVDNTI 194 (436)
T ss_pred HHHHHHHHcCCEEEEECCC
Confidence 9999999999999999853
No 416
>PF00289 CPSase_L_chain: Carbamoyl-phosphate synthase L chain, N-terminal domain; InterPro: IPR005481 Carbamoyl phosphate synthase (CPSase) is a heterodimeric enzyme composed of a small and a large subunit (with the exception of CPSase III, see below). CPSase catalyses the synthesis of carbamoyl phosphate from biocarbonate, ATP and glutamine (6.3.5.5 from EC) or ammonia (6.3.4.16 from EC), and represents the first committed step in pyrimidine and arginine biosynthesis in prokaryotes and eukaryotes, and in the urea cycle in most terrestrial vertebrates [, ]. CPSase has three active sites, one in the small subunit and two in the large subunit. The small subunit contains the glutamine binding site and catalyses the hydrolysis of glutamine to glutamate and ammonia. The large subunit has two homologous carboxy phosphate domains, both of which have ATP-binding sites; however, the N-terminal carboxy phosphate domain catalyses the phosphorylation of biocarbonate, while the C-terminal domain catalyses the phosphorylation of the carbamate intermediate []. The carboxy phosphate domain found duplicated in the large subunit of CPSase is also present as a single copy in the biotin-dependent enzymes acetyl-CoA carboxylase (6.4.1.2 from EC) (ACC), propionyl-CoA carboxylase (6.4.1.3 from EC) (PCCase), pyruvate carboxylase (6.4.1.1 from EC) (PC) and urea carboxylase (6.3.4.6 from EC). Most prokaryotes carry one form of CPSase that participates in both arginine and pyrimidine biosynthesis, however certain bacteria can have separate forms. The large subunit in bacterial CPSase has four structural domains: the carboxy phosphate domain 1, the oligomerisation domain, the carbamoyl phosphate domain 2 and the allosteric domain []. CPSase heterodimers from Escherichia coli contain two molecular tunnels: an ammonia tunnel and a carbamate tunnel. These inter-domain tunnels connect the three distinct active sites, and function as conduits for the transport of unstable reaction intermediates (ammonia and carbamate) between successive active sites []. The catalytic mechanism of CPSase involves the diffusion of carbamate through the interior of the enzyme from the site of synthesis within the N-terminal domain of the large subunit to the site of phosphorylation within the C-terminal domain. Eukaryotes have two distinct forms of CPSase: a mitochondrial enzyme (CPSase I) that participates in both arginine biosynthesis and the urea cycle; and a cytosolic enzyme (CPSase II) involved in pyrimidine biosynthesis. CPSase II occurs as part of a multi-enzyme complex along with aspartate transcarbamoylase and dihydroorotase; this complex is referred to as the CAD protein []. The hepatic expression of CPSase is transcriptionally regulated by glucocorticoids and/or cAMP []. There is a third form of the enzyme, CPSase III, found in fish, which uses glutamine as a nitrogen source instead of ammonia []. CPSase III is closely related to CPSase I, and is composed of a single polypeptide that may have arisen from gene fusion of the glutaminase and synthetase domains []. This entry represents the N-terminal domain of the large subunit of carbamoyl phosphate synthase. This domain can also be found in certain other related proteins. ; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VA7_A 3OUU_A 3OUZ_B 1W96_B 1W93_A 1ULZ_A 3HB9_C 3HO8_A 3BG5_C 3HBL_A ....
Probab=31.93 E-value=41 Score=26.40 Aligned_cols=63 Identities=13% Similarity=0.238 Sum_probs=36.0
Q ss_pred HHHhhhHHHHcCCCEEEeCCCCCCCC------CCCC------CcccCC---------------CcCCCCCCHHHHHHHHH
Q 021281 45 LERKVPDISKSGFTSVWLPPATHSFA------PEGY------LPQNLY---------------SLNSSYGSEHLLKALLH 97 (314)
Q Consensus 45 i~~~ldyl~~lG~~~I~l~Pi~~~~~------~~gY------~~~d~~---------------~id~~~Gt~~df~~lv~ 97 (314)
..+.+.-++++|+.+|-+..--+..+ +.-| .+..|. .+.|-||-..+=.+|.+
T Consensus 14 a~r~~ra~r~~Gi~tv~v~s~~d~~s~~~~~ad~~~~~~~~~~~~~yl~~e~I~~ia~~~g~~~i~pGyg~lse~~~fa~ 93 (110)
T PF00289_consen 14 AVRIIRALRELGIETVAVNSNPDTVSTHVDMADEAYFEPPGPSPESYLNIEAIIDIARKEGADAIHPGYGFLSENAEFAE 93 (110)
T ss_dssp HHHHHHHHHHTTSEEEEEEEGGGTTGHHHHHSSEEEEEESSSGGGTTTSHHHHHHHHHHTTESEEESTSSTTTTHHHHHH
T ss_pred HHHHHHHHHHhCCcceeccCchhcccccccccccceecCcchhhhhhccHHHHhhHhhhhcCcccccccchhHHHHHHHH
Confidence 45667888999999998854333321 1111 111122 22366676666677777
Q ss_pred HHhhCCCEEE
Q 021281 98 KMKQHKVRAM 107 (314)
Q Consensus 98 ~ah~~Gi~Vi 107 (314)
+|.+.||++|
T Consensus 94 ~~~~~gi~fi 103 (110)
T PF00289_consen 94 ACEDAGIIFI 103 (110)
T ss_dssp HHHHTT-EES
T ss_pred HHHHCCCEEE
Confidence 7777777654
No 417
>PRK06777 4-aminobutyrate aminotransferase; Provisional
Probab=31.90 E-value=1.1e+02 Score=29.70 Aligned_cols=50 Identities=18% Similarity=0.235 Sum_probs=38.0
Q ss_pred cCCCEEEeCCCCCCCCCCCCCcccCCCcCCCCCCHHHHHHHHHHHhhCCCEEEEeeeeccccC
Q 021281 55 SGFTSVWLPPATHSFAPEGYLPQNLYSLNSSYGSEHLLKALLHKMKQHKVRAMADIVINHRVG 117 (314)
Q Consensus 55 lG~~~I~l~Pi~~~~~~~gY~~~d~~~id~~~Gt~~df~~lv~~ah~~Gi~VilD~V~NH~~~ 117 (314)
-.+-+|.+-|++-. .|..+. +.+-|+++.+.|+++|+-+|+|=|....+.
T Consensus 197 ~~iaavi~Epv~~~---~G~~~~----------~~~~l~~l~~lc~~~g~llI~DEv~tg~gr 246 (421)
T PRK06777 197 DQVAAILLEPIQGE---GGFNVA----------PPEFMSALRTLCDEHGILLIADEVQTGFAR 246 (421)
T ss_pred CceEEEEECCccCC---CCCccC----------CHHHHHHHHHHHHHcCCEEEEechhhCCcc
Confidence 35789999998633 343322 467899999999999999999999775544
No 418
>PF00218 IGPS: Indole-3-glycerol phosphate synthase; InterPro: IPR013798 Indole-3-glycerol phosphate synthase (4.1.1.48 from EC) (IGPS) catalyses the fourth step in the biosynthesis of tryptophan, the ring closure of 1-(2-carboxy-phenylamino)-1-deoxyribulose into indol-3-glycerol-phosphate. In some bacteria, IGPS is a single chain enzyme. In others, such as Escherichia coli, it is the N-terminal domain of a bifunctional enzyme that also catalyses N-(5'-phosphoribosyl)anthranilate isomerase (5.3.1.24 from EC) (PRAI) activity (see IPR001240 from INTERPRO), the third step of tryptophan biosynthesis. In fungi, IGPS is the central domain of a trifunctional enzyme that contains a PRAI C-terminal domain and a glutamine amidotransferase (2.4.2 from EC) (GATase) N-terminal domain (see IPR000991 from INTERPRO). A structure of the IGPS domain of the bifunctional enzyme from the mesophilic bacterium E. coli (eIGPS) has been compared with the monomeric indole-3-glycerol phosphate synthase from the hyperthermophilic archaeon Sulfolobus solfataricus (sIGPS). Both are single-domain (beta/alpha)8 barrel proteins, with one (eIGPS) or two (sIGPS) additional helices inserted before the first beta strand []. ; GO: 0004425 indole-3-glycerol-phosphate synthase activity; PDB: 1VC4_A 1PII_A 1JCM_P 1I4N_B 1J5T_A 3TSM_B 4FB7_A 3QJA_A 1JUL_A 2C3Z_A ....
Probab=31.86 E-value=54 Score=29.88 Aligned_cols=23 Identities=22% Similarity=0.372 Sum_probs=19.9
Q ss_pred CHHHHHHHHHHHhhCCCEEEEee
Q 021281 88 SEHLLKALLHKMKQHKVRAMADI 110 (314)
Q Consensus 88 t~~df~~lv~~ah~~Gi~VilD~ 110 (314)
+.+.+++|++.||..||.+++.+
T Consensus 143 ~~~~l~~l~~~a~~lGle~lVEV 165 (254)
T PF00218_consen 143 SDDQLEELLELAHSLGLEALVEV 165 (254)
T ss_dssp GHHHHHHHHHHHHHTT-EEEEEE
T ss_pred CHHHHHHHHHHHHHcCCCeEEEE
Confidence 46779999999999999999977
No 419
>PRK00125 pyrF orotidine 5'-phosphate decarboxylase; Reviewed
Probab=31.85 E-value=47 Score=30.66 Aligned_cols=28 Identities=14% Similarity=0.055 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHhhCCCEEEEeeeecccc
Q 021281 89 EHLLKALLHKMKQHKVRAMADIVINHRV 116 (314)
Q Consensus 89 ~~df~~lv~~ah~~Gi~VilD~V~NH~~ 116 (314)
.+.++++|++++++|+.||+|+=.+=.+
T Consensus 72 ~~~l~~~i~~l~~~g~~VilD~K~~DI~ 99 (278)
T PRK00125 72 LAQLERTIAYLREAGVLVIADAKRGDIG 99 (278)
T ss_pred hhHHHHHHHHHHHCCCcEEEEeecCChH
Confidence 3678889999999999999999877554
No 420
>PLN02460 indole-3-glycerol-phosphate synthase
Probab=31.84 E-value=55 Score=31.12 Aligned_cols=23 Identities=17% Similarity=0.248 Sum_probs=20.9
Q ss_pred CHHHHHHHHHHHhhCCCEEEEee
Q 021281 88 SEHLLKALLHKMKQHKVRAMADI 110 (314)
Q Consensus 88 t~~df~~lv~~ah~~Gi~VilD~ 110 (314)
+.+++++|++.||..||.+++.+
T Consensus 215 ~~~~L~~l~~~A~~LGme~LVEV 237 (338)
T PLN02460 215 PDLDIKYMLKICKSLGMAALIEV 237 (338)
T ss_pred CHHHHHHHHHHHHHcCCeEEEEe
Confidence 35789999999999999999976
No 421
>COG3469 Chitinase [Carbohydrate transport and metabolism]
Probab=31.76 E-value=1.8e+02 Score=26.69 Aligned_cols=31 Identities=3% Similarity=0.097 Sum_probs=25.0
Q ss_pred CCCcCCCCCCHHHHHHHHHHHhhCCCEEEEe
Q 021281 79 LYSLNSSYGSEHLLKALLHKMKQHKVRAMAD 109 (314)
Q Consensus 79 ~~~id~~~Gt~~df~~lv~~ah~~Gi~VilD 109 (314)
.+..-|..-+..+||+=|.++++.|=.|+|-
T Consensus 74 iptf~P~~~~daeFr~~v~aLnaeGkavlls 104 (332)
T COG3469 74 IPTFKPYNDPDAEFRAQVGALNAEGKAVLLS 104 (332)
T ss_pred CcccCcCCCCHHHHHHHHHHhhccCcEEEEE
Confidence 3445566667799999999999999988883
No 422
>PLN02757 sirohydrochlorine ferrochelatase
Probab=31.65 E-value=1.3e+02 Score=25.09 Aligned_cols=29 Identities=14% Similarity=0.125 Sum_probs=21.6
Q ss_pred HHHHhhhHHHHcCCCEEEeCCCCCCCCCC
Q 021281 44 NLERKVPDISKSGFTSVWLPPATHSFAPE 72 (314)
Q Consensus 44 gi~~~ldyl~~lG~~~I~l~Pi~~~~~~~ 72 (314)
.+.+.|+.+.+.|++.|.+.|.|-+.+.|
T Consensus 59 sl~eal~~l~~~g~~~vvVvP~FL~~G~H 87 (154)
T PLN02757 59 SIKDAFGRCVEQGASRVIVSPFFLSPGRH 87 (154)
T ss_pred CHHHHHHHHHHCCCCEEEEEEhhhcCCcc
Confidence 36666677778899999999988766433
No 423
>TIGR02127 pyrF_sub2 orotidine 5'-phosphate decarboxylase, subfamily 2. This model represents orotidine 5'-monophosphate decarboxylase, the PyrF protein of pyrimidine nucleotide biosynthesis. See TIGR01740 for a related but distinct subfamily of the same enzyme.
Probab=31.65 E-value=52 Score=30.07 Aligned_cols=33 Identities=15% Similarity=0.236 Sum_probs=26.2
Q ss_pred CCCCC--HHHHHHHHHHHhhCCCEEEEeeeecccc
Q 021281 84 SSYGS--EHLLKALLHKMKQHKVRAMADIVINHRV 116 (314)
Q Consensus 84 ~~~Gt--~~df~~lv~~ah~~Gi~VilD~V~NH~~ 116 (314)
.++|. ...|+++++.++++|+.||+|+=+.=.+
T Consensus 65 ~~~G~~gi~~l~~~~~~~~~~g~~VilD~K~~DIp 99 (261)
T TIGR02127 65 ERFGSEGFKALEEVIAHARSLGLPVLADVKRGDIG 99 (261)
T ss_pred HhcCHHHHHHHHHHHHHHHHCCCeEEEEeeccChH
Confidence 44554 4678889999999999999999876444
No 424
>TIGR01329 cysta_beta_ly_E cystathionine beta-lyase, eukaryotic. This model represents cystathionine beta-lyase (alternate name: beta-cystathionase), one of several pyridoxal-dependent enzymes of cysteine, methionine, and homocysteine metabolism. This enzyme is involved in the biosynthesis of Met from Cys.
Probab=31.65 E-value=41 Score=32.26 Aligned_cols=84 Identities=13% Similarity=0.090 Sum_probs=50.0
Q ss_pred ccCCceeEEEEeeCCCCCCchHHHHHHhhh-HHHHcCCCEEEeCCCCCCC----CCCCCCcccCCCcCCCCCCHHHHHHH
Q 021281 21 IRNGREILFQGFNWESCKHDWWRNLERKVP-DISKSGFTSVWLPPATHSF----APEGYLPQNLYSLNSSYGSEHLLKAL 95 (314)
Q Consensus 21 ~~~~~~~i~q~F~w~~~~~g~~~gi~~~ld-yl~~lG~~~I~l~Pi~~~~----~~~gY~~~d~~~id~~~Gt~~df~~l 95 (314)
.++|+.||+.-.. +.+....+. .++..|++.+++.+.-... -...-...=...+..-.|...+++++
T Consensus 82 l~~Gd~Vl~~~~~--------y~~~~~~~~~~~~~~G~~v~~vd~~d~~~le~~i~~~tklv~le~psnptg~v~dl~~I 153 (378)
T TIGR01329 82 LNNGDEIIAGDDL--------YGGTDRLLTQVVPRSGVVVVHVDTTDLDKVKAALGPKTKLVLLESPTNPLQKIVDIRKI 153 (378)
T ss_pred hCCCCEEEEcCCC--------chHHHHHHHHHHHHcCcEEEEeCCCCHHHHHHhcCcCceEEEEECCCCCCCeeecHHHH
Confidence 4677777776443 333333333 3466788888876421000 00111111112244557777889999
Q ss_pred HHHHhhCCCEEEEeeee
Q 021281 96 LHKMKQHKVRAMADIVI 112 (314)
Q Consensus 96 v~~ah~~Gi~VilD~V~ 112 (314)
++.||++|+.||+|-..
T Consensus 154 ~~la~~~g~~vivD~a~ 170 (378)
T TIGR01329 154 SEMAHAQNALVVVDNTM 170 (378)
T ss_pred HHHHHHcCCEEEEECCC
Confidence 99999999999999863
No 425
>PRK05926 hypothetical protein; Provisional
Probab=31.59 E-value=56 Score=31.43 Aligned_cols=90 Identities=11% Similarity=-0.062 Sum_probs=54.4
Q ss_pred CceeEEEEeeCCCCCCchHHHHHHhhhHHHHc--CCCEEEeCCC--------CCCC--------------CCCC--CCcc
Q 021281 24 GREILFQGFNWESCKHDWWRNLERKVPDISKS--GFTSVWLPPA--------THSF--------------APEG--YLPQ 77 (314)
Q Consensus 24 ~~~~i~q~F~w~~~~~g~~~gi~~~ldyl~~l--G~~~I~l~Pi--------~~~~--------------~~~g--Y~~~ 77 (314)
..++.+|. .-. |. -+++.+.+.+..|++. ++..-.++|+ .... +++| ..+.
T Consensus 115 ~~ei~iv~-G~~-p~-~~~e~~~e~i~~Ik~~~p~i~i~a~s~~Ei~~~~~~~~~~~~e~l~~LkeAGl~~~~g~GaEi~ 191 (370)
T PRK05926 115 ITETHIVA-GCF-PS-CNLAYYEELFSKIKQNFPDLHIKALTAIEYAYLSKLDNLPVKEVLQTLKIAGLDSIPGGGAEIL 191 (370)
T ss_pred CCEEEEEe-CcC-CC-CCHHHHHHHHHHHHHhCCCeeEEECCHHHHHHHHhhcCCCHHHHHHHHHHcCcCccCCCCchhc
Confidence 36778885 222 32 3577777888888875 3443345553 0000 1221 2111
Q ss_pred c---CCCcCCCCCCHHHHHHHHHHHhhCCCEEEEeeeecccc
Q 021281 78 N---LYSLNSSYGSEHLLKALLHKMKQHKVRAMADIVINHRV 116 (314)
Q Consensus 78 d---~~~id~~~Gt~~df~~lv~~ah~~Gi~VilD~V~NH~~ 116 (314)
+ ...+.|.--+.++..+.++.||+.||++-.=+++.|.-
T Consensus 192 ~e~~r~~~~p~~~t~~e~l~~i~~a~~~Gi~~~sgmi~G~gE 233 (370)
T PRK05926 192 VDEIRETLAPGRLSSQGFLEIHKTAHSLGIPSNATMLCYHRE 233 (370)
T ss_pred CHHHHHhhCCCCCCHHHHHHHHHHHHHcCCcccCceEEeCCC
Confidence 1 12244555577889999999999999998888887654
No 426
>PRK12381 bifunctional succinylornithine transaminase/acetylornithine transaminase; Provisional
Probab=31.48 E-value=1.4e+02 Score=28.81 Aligned_cols=60 Identities=15% Similarity=0.119 Sum_probs=41.1
Q ss_pred hHHHHHHhhhHHHHcCCCEEEeCCCCCCCCCCCCCcccCCCcCCCCCCHHHHHHHHHHHhhCCCEEEEeeeeccccC
Q 021281 41 WWRNLERKVPDISKSGFTSVWLPPATHSFAPEGYLPQNLYSLNSSYGSEHLLKALLHKMKQHKVRAMADIVINHRVG 117 (314)
Q Consensus 41 ~~~gi~~~ldyl~~lG~~~I~l~Pi~~~~~~~gY~~~d~~~id~~~Gt~~df~~lv~~ah~~Gi~VilD~V~NH~~~ 117 (314)
+++.+++.+. -.+.+|.+-|++... |.-+. +.+.+++|++-|+++|+-+|+|=|.-.++.
T Consensus 172 d~~~l~~~l~----~~~aaviiEPv~~~g---g~~~~----------~~~~l~~l~~l~~~~~~llI~DEv~tG~gr 231 (406)
T PRK12381 172 DLNSASALID----DQTCAVIVEPIQGEG---GVIPA----------DKAFLQGLRELCDRHNALLIFDEVQTGVGR 231 (406)
T ss_pred CHHHHHHhcc----CCeeEEEEeCCcCCC---CCcCC----------CHHHHHHHHHHHHHcCCEEEEcchhhCCCC
Confidence 4566655553 146788888876432 32211 367899999999999999999999754443
No 427
>PRK11145 pflA pyruvate formate lyase-activating enzyme 1; Provisional
Probab=31.37 E-value=1.1e+02 Score=27.07 Aligned_cols=64 Identities=13% Similarity=0.005 Sum_probs=36.4
Q ss_pred HHHHHhhhHHHHcC-CCEEEeCCCCCCCCCCCCCccc--CCCcCCCCCCHHHHHHHHHHHhhCCCEEE
Q 021281 43 RNLERKVPDISKSG-FTSVWLPPATHSFAPEGYLPQN--LYSLNSSYGSEHLLKALLHKMKQHKVRAM 107 (314)
Q Consensus 43 ~gi~~~ldyl~~lG-~~~I~l~Pi~~~~~~~gY~~~d--~~~id~~~Gt~~df~~lv~~ah~~Gi~Vi 107 (314)
+.+.+-++.+++++ +..|.|+|.+..+ .+.|...+ +...+-+--+.++++++.+.+++.|+++.
T Consensus 179 ~ei~~l~~~l~~l~~~~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~e~l~~~~~~~~~~g~~~~ 245 (246)
T PRK11145 179 DSAHRLGEFIKDMGNIEKIELLPYHELG-KHKWEAMGEEYKLDGVKPPSKETMERVKGILEQYGHKVM 245 (246)
T ss_pred HHHHHHHHHHHhcCCcceEEEecCCccc-hhHHHHcCCcccccCCCCCCHHHHHHHHHHHHHcCCccc
Confidence 34445555555554 6677777776553 11121111 11111122468899999999999998874
No 428
>TIGR00676 fadh2 5,10-methylenetetrahydrofolate reductase, prokaryotic form. This protein is an FAD-containing flavoprotein.
Probab=31.20 E-value=1.9e+02 Score=26.39 Aligned_cols=71 Identities=14% Similarity=0.058 Sum_probs=49.8
Q ss_pred CCCCc-hHHHHHHhhhHHHHcCCCEEEeCC--CCCCC-----------CCCCCCcccCCCcCCCCCCHHHHHHHHHHHhh
Q 021281 36 SCKHD-WWRNLERKVPDISKSGFTSVWLPP--ATHSF-----------APEGYLPQNLYSLNSSYGSEHLLKALLHKMKQ 101 (314)
Q Consensus 36 ~~~~g-~~~gi~~~ldyl~~lG~~~I~l~P--i~~~~-----------~~~gY~~~d~~~id~~~Gt~~df~~lv~~ah~ 101 (314)
-|++. ..+.+.+.++.|+++|++.|-++= --... ...|+.+.=+... +--+..++++.+..+++
T Consensus 7 PP~~~~~~~~l~~~~~~l~~~~pd~isvT~~~~~~~~~~t~~~a~~l~~~~g~~~i~Hlt~--r~~n~~~l~~~L~~~~~ 84 (272)
T TIGR00676 7 PPKTDEGEENLWETVDRLSPLDPDFVSVTYGAGGSTRDRTVRIVRRIKKETGIPTVPHLTC--IGATREEIREILREYRE 84 (272)
T ss_pred CcCCchhHHHHHHHHHHHhcCCCCEEEeccCCCCCcHHHHHHHHHHHHHhcCCCeeEEeee--cCCCHHHHHHHHHHHHH
Confidence 34454 468999999999999999999842 21111 1347776633332 22378899999999999
Q ss_pred CCCEEEE
Q 021281 102 HKVRAMA 108 (314)
Q Consensus 102 ~Gi~Vil 108 (314)
.||+=||
T Consensus 85 ~Gi~nvL 91 (272)
T TIGR00676 85 LGIRHIL 91 (272)
T ss_pred CCCCEEE
Confidence 9999555
No 429
>PRK14330 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=31.19 E-value=92 Score=30.47 Aligned_cols=31 Identities=16% Similarity=0.314 Sum_probs=26.6
Q ss_pred CHHHHHHHHHHHhhC--CCEEEEeeeeccccCC
Q 021281 88 SEHLLKALLHKMKQH--KVRAMADIVINHRVGT 118 (314)
Q Consensus 88 t~~df~~lv~~ah~~--Gi~VilD~V~NH~~~~ 118 (314)
+.+++.++|+.++++ |+.|..|+.+.+-+..
T Consensus 273 ~~~~~~~~i~~lr~~~~~i~i~~d~IvGfPgET 305 (434)
T PRK14330 273 TREEYLELIEKIRSKVPDASISSDIIVGFPTET 305 (434)
T ss_pred CHHHHHHHHHHHHHhCCCCEEEEEEEEECCCCC
Confidence 678999999999997 8999999999875543
No 430
>TIGR01325 O_suc_HS_sulf O-succinylhomoserine sulfhydrylase. This model describes O-succinylhomoserine sulfhydrylase, one of several related pyridoxal phosphate-dependent enzymes of cysteine and methionine metabolism. This enzyme is part of an alternative pathway of homocysteine biosynthesis, a step in methionine biosynthesis.
Probab=31.09 E-value=41 Score=32.21 Aligned_cols=31 Identities=16% Similarity=0.077 Sum_probs=26.5
Q ss_pred CCCCCCHHHHHHHHHHHhhCCCEEEEeeeec
Q 021281 83 NSSYGSEHLLKALLHKMKQHKVRAMADIVIN 113 (314)
Q Consensus 83 d~~~Gt~~df~~lv~~ah~~Gi~VilD~V~N 113 (314)
....|+..+++++++.||++|+.||+|-+.-
T Consensus 149 ~np~g~~~dl~~I~~la~~~gi~livD~a~~ 179 (380)
T TIGR01325 149 SNPLGELVDIAALAELAHAIGALLVVDNVFA 179 (380)
T ss_pred CCCCCeeeCHHHHHHHHHHcCCEEEEECCCc
Confidence 3446888899999999999999999999854
No 431
>cd00564 TMP_TenI Thiamine monophosphate synthase (TMP synthase)/TenI. TMP synthase catalyzes an important step in the thiamine biosynthesis pathway, the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl) thiazole phosphate to yield thiamine phosphate. TenI is a enzymatically inactive regulatory protein involved in the regulation of several extracellular enzymes. This superfamily also contains other enzymatically inactive proteins with unknown functions.
Probab=30.99 E-value=1.7e+02 Score=24.32 Aligned_cols=50 Identities=16% Similarity=0.083 Sum_probs=31.9
Q ss_pred hhhHHHHcCCCEEEeCCCCCCCCCCCC-CcccCCCcCCCCCCHHHHHHHHHHHhhCCCEEEEee
Q 021281 48 KVPDISKSGFTSVWLPPATHSFAPEGY-LPQNLYSLNSSYGSEHLLKALLHKMKQHKVRAMADI 110 (314)
Q Consensus 48 ~ldyl~~lG~~~I~l~Pi~~~~~~~gY-~~~d~~~id~~~Gt~~df~~lv~~ah~~Gi~VilD~ 110 (314)
.+....+.|++.|.++|+++..+..++ .+ .+.+.++++.+. ..+.|+++.
T Consensus 107 ~~~~~~~~g~d~i~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~---~~~pv~a~G 157 (196)
T cd00564 107 EALRAEELGADYVGFGPVFPTPTKPGAGPP----------LGLELLREIAEL---VEIPVVAIG 157 (196)
T ss_pred HHHHHhhcCCCEEEECCccCCCCCCCCCCC----------CCHHHHHHHHHh---CCCCEEEEC
Confidence 445567789999999999877643332 11 135556665443 457777753
No 432
>COG1489 SfsA DNA-binding protein, stimulates sugar fermentation [General function prediction only]
Probab=30.95 E-value=99 Score=27.82 Aligned_cols=54 Identities=20% Similarity=0.288 Sum_probs=38.2
Q ss_pred HHhhhHHHHcCCCEEEeCCCCCCCCCCCCCcccCCCcCCCCCCHHHHHHHHHHHhhCCCEEEE
Q 021281 46 ERKVPDISKSGFTSVWLPPATHSFAPEGYLPQNLYSLNSSYGSEHLLKALLHKMKQHKVRAMA 108 (314)
Q Consensus 46 ~~~ldyl~~lG~~~I~l~Pi~~~~~~~gY~~~d~~~id~~~Gt~~df~~lv~~ah~~Gi~Vil 108 (314)
.+.|..+++.|+.+|.|-=++... -.-+.|. +.+|| .|.++..+|+++|++|+.
T Consensus 157 LreL~~~~~~G~ra~vlf~v~r~d-~~~F~P~--~e~Dp------~fa~~l~~A~~~GVev~~ 210 (235)
T COG1489 157 LRELERLAKEGYRAVVLFLVLRSD-ITRFSPN--REIDP------KFAELLREAIKAGVEVLA 210 (235)
T ss_pred HHHHHHHHHcCCceEEEEEEecCC-CcEECcc--cccCH------HHHHHHHHHHHcCCEEEE
Confidence 456677888999999987776543 2234443 34554 456888899999999986
No 433
>PRK09776 putative diguanylate cyclase; Provisional
Probab=30.83 E-value=63 Score=35.14 Aligned_cols=80 Identities=15% Similarity=0.129 Sum_probs=54.3
Q ss_pred ceeEEEEeeCCCCCCchHHHHHHhhhHHHHcCCCEEEeCCCCCCCCCCCCC--------cccCCCcCCCC--------CC
Q 021281 25 REILFQGFNWESCKHDWWRNLERKVPDISKSGFTSVWLPPATHSFAPEGYL--------PQNLYSLNSSY--------GS 88 (314)
Q Consensus 25 ~~~i~q~F~w~~~~~g~~~gi~~~ldyl~~lG~~~I~l~Pi~~~~~~~gY~--------~~d~~~id~~~--------Gt 88 (314)
+.+++++-+-.... +.+.+.+.+..|+++||.-- |-=+ ..||. +.|+-+||..| ..
T Consensus 958 ~~l~~Ei~e~~~~~--~~~~~~~~~~~l~~~G~~~~-lddf-----g~g~~~~~~l~~~~~d~iKid~~~~~~~~~~~~~ 1029 (1092)
T PRK09776 958 RLLHLEITETALLN--HAESASRLVQKLRLAGCRVV-LSDF-----GRGLSSFNYLKAFMADYLKLDGELVANLHGNLMD 1029 (1092)
T ss_pred HHeEEEEecHHhhc--CHHHHHHHHHHHHHCCcEEE-EcCC-----CCCchHHHHHHhCCCCEEEECHHHHHhHhcChhh
Confidence 45777777643222 47888999999999999533 2211 12333 56677777544 22
Q ss_pred HHHHHHHHHHHhhCCCEEEEeeee
Q 021281 89 EHLLKALLHKMKQHKVRAMADIVI 112 (314)
Q Consensus 89 ~~df~~lv~~ah~~Gi~VilD~V~ 112 (314)
..-++.+++.||+.|++||...|=
T Consensus 1030 ~~~~~~i~~~~~~~~~~~iaegVE 1053 (1092)
T PRK09776 1030 EMLISIIQGHAQRLGMKTIAGPVE 1053 (1092)
T ss_pred HHHHHHHHHHHHHcCCcEEecccC
Confidence 445888999999999999997653
No 434
>PLN00145 tyrosine/nicotianamine aminotransferase; Provisional
Probab=30.82 E-value=54 Score=31.95 Aligned_cols=30 Identities=20% Similarity=0.171 Sum_probs=26.8
Q ss_pred CHHHHHHHHHHHhhCCCEEEEeeeeccccC
Q 021281 88 SEHLLKALLHKMKQHKVRAMADIVINHRVG 117 (314)
Q Consensus 88 t~~df~~lv~~ah~~Gi~VilD~V~NH~~~ 117 (314)
+.++++++++.|+++|+-||.|=++.|...
T Consensus 208 ~~~~l~~i~~~a~~~~i~ii~De~Y~~~~~ 237 (430)
T PLN00145 208 SYEHLAKIAETARKLGILVIADEVYDHLTF 237 (430)
T ss_pred CHHHHHHHHHHHHHcCCEEEEeccchhhcc
Confidence 468899999999999999999999988754
No 435
>PRK08960 hypothetical protein; Provisional
Probab=30.72 E-value=58 Score=30.98 Aligned_cols=29 Identities=17% Similarity=0.157 Sum_probs=25.6
Q ss_pred CHHHHHHHHHHHhhCCCEEEEeeeecccc
Q 021281 88 SEHLLKALLHKMKQHKVRAMADIVINHRV 116 (314)
Q Consensus 88 t~~df~~lv~~ah~~Gi~VilD~V~NH~~ 116 (314)
+.++++++++.||++|+-||+|-++.+..
T Consensus 183 ~~~~~~~l~~~~~~~~~~li~De~Y~~~~ 211 (387)
T PRK08960 183 SRDELAALSQALRARGGHLVVDEIYHGLT 211 (387)
T ss_pred CHHHHHHHHHHHHHcCCEEEEEccccccc
Confidence 47899999999999999999999887654
No 436
>cd07940 DRE_TIM_IPMS 2-isopropylmalate synthase (IPMS), N-terminal catalytic TIM barrel domain. 2-isopropylmalate synthase (IPMS) catalyzes an aldol-type condensation of acetyl-CoA and 2-oxoisovalerate yielding 2-isopropylmalate and CoA, the first committed step in leucine biosynthesis. This family includes the Arabidopsis thaliana IPMS1 and IPMS2 proteins, the Glycine max GmN56 protein, and the Brassica insularis BatIMS protein. This family also includes a group of archeal IPMS-like proteins represented by the Methanocaldococcus jannaschii AksA protein. AksA catalyzes the condensation of alpha-ketoglutarate and acetyl-CoA to form trans-homoaconitate, one of 13 steps in the conversion of alpha-ketoglutarate and acetylCoA to alpha-ketosuberate, a precursor to coenzyme B and biotin. AksA also catalyzes the condensation of alpha-ketoadipate or alpha-ketopimelate with acetylCoA to form, respectively, the (R)-homocitrate homologs (R)-2-hydroxy-1,2,5-pentanetricarboxylic acid and (R)-2-h
Probab=30.70 E-value=3.4e+02 Score=24.49 Aligned_cols=39 Identities=13% Similarity=0.070 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHhCCCCEEEe-ccCCCCCHHHHHHHHHhhC
Q 021281 172 KDIIAWLRWLRNTVGFQDFRF-DFARGYSAKYVKEYIEGAR 211 (314)
Q Consensus 172 ~~l~~~~~~w~~~~gvDGfRl-Daa~~i~~~f~~~~~~~~~ 211 (314)
+++.+.++... ++|+|.+++ |++-...++-+.++++.++
T Consensus 143 ~~~~~~~~~~~-~~G~~~i~l~DT~G~~~P~~v~~lv~~l~ 182 (268)
T cd07940 143 DFLIEVVEAAI-EAGATTINIPDTVGYLTPEEFGELIKKLK 182 (268)
T ss_pred HHHHHHHHHHH-HcCCCEEEECCCCCCCCHHHHHHHHHHHH
Confidence 45666666666 889999987 6677777877777777665
No 437
>COG1441 MenC O-succinylbenzoate synthase [Coenzyme metabolism]
Probab=30.65 E-value=50 Score=29.77 Aligned_cols=24 Identities=17% Similarity=0.253 Sum_probs=21.4
Q ss_pred CCCHHHHHHHHHHHhhCCCEEEEe
Q 021281 86 YGSEHLLKALLHKMKQHKVRAMAD 109 (314)
Q Consensus 86 ~Gt~~df~~lv~~ah~~Gi~VilD 109 (314)
-|+.+-.+++|++||+.|+.-++-
T Consensus 240 ~GSl~r~~eli~qAh~lGl~AVIS 263 (321)
T COG1441 240 TGSLQRVRELVQQAHALGLTAVIS 263 (321)
T ss_pred hhhHHHHHHHHHHHHhcCceeEee
Confidence 478899999999999999998873
No 438
>PRK06939 2-amino-3-ketobutyrate coenzyme A ligase; Provisional
Probab=30.64 E-value=44 Score=31.57 Aligned_cols=30 Identities=17% Similarity=0.021 Sum_probs=25.7
Q ss_pred CCCCCHHHHHHHHHHHhhCCCEEEEeeeec
Q 021281 84 SSYGSEHLLKALLHKMKQHKVRAMADIVIN 113 (314)
Q Consensus 84 ~~~Gt~~df~~lv~~ah~~Gi~VilD~V~N 113 (314)
+..|+.++++++++.|+++|+-||.|-+..
T Consensus 185 ~~~G~~~~~~~l~~la~~~~~~li~De~~~ 214 (397)
T PRK06939 185 SMDGDIAPLPEICDLADKYDALVMVDDSHA 214 (397)
T ss_pred CCCCCcCCHHHHHHHHHHhCCEEEEECccc
Confidence 345667789999999999999999999974
No 439
>PRK00923 sirohydrochlorin cobaltochelatase; Reviewed
Probab=30.58 E-value=85 Score=24.77 Aligned_cols=28 Identities=7% Similarity=0.190 Sum_probs=23.6
Q ss_pred HHHHHhhhHHHHcCCCEEEeCCCCCCCC
Q 021281 43 RNLERKVPDISKSGFTSVWLPPATHSFA 70 (314)
Q Consensus 43 ~gi~~~ldyl~~lG~~~I~l~Pi~~~~~ 70 (314)
-.+.+.++.+.+.|++.|.+.|.|-..+
T Consensus 46 P~l~~~l~~l~~~g~~~v~vvPlfl~~G 73 (126)
T PRK00923 46 PTIPEALKKLIGTGADKIIVVPVFLAHG 73 (126)
T ss_pred CCHHHHHHHHHHcCCCEEEEEchhhccC
Confidence 3577888899999999999999986653
No 440
>TIGR00674 dapA dihydrodipicolinate synthase. Dihydrodipicolinate synthase is a homotetrameric enzyme of lysine biosynthesis. E. coli has several paralogs closely related to dihydrodipicoline synthase (DapA), as well as the more distant N-acetylneuraminate lyase. In Pyrococcus horikoshii, the bidirectional best hit with E. coli is to an uncharacterized paralog of DapA, not DapA itself, and it is omitted from the seed. The putative members from the Chlamydias (pathogens with a parasitic metabolism) are easily the most divergent members of the multiple alignment.
Probab=30.53 E-value=1.2e+02 Score=27.73 Aligned_cols=26 Identities=4% Similarity=-0.197 Sum_probs=23.6
Q ss_pred hHHHHHHhhhHHHHcCCCEEEeCCCC
Q 021281 41 WWRNLERKVPDISKSGFTSVWLPPAT 66 (314)
Q Consensus 41 ~~~gi~~~ldyl~~lG~~~I~l~Pi~ 66 (314)
..+...+...+.+++|+++|.+.|++
T Consensus 78 s~~~~i~~a~~a~~~Gad~v~v~pP~ 103 (285)
T TIGR00674 78 ATEEAISLTKFAEDVGADGFLVVTPY 103 (285)
T ss_pred cHHHHHHHHHHHHHcCCCEEEEcCCc
Confidence 47889999999999999999999876
No 441
>PLN02746 hydroxymethylglutaryl-CoA lyase
Probab=30.50 E-value=3.1e+02 Score=26.17 Aligned_cols=39 Identities=13% Similarity=0.064 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHhCCCCEEEe-ccCCCCCHHHHHHHHHhhC
Q 021281 172 KDIIAWLRWLRNTVGFQDFRF-DFARGYSAKYVKEYIEGAR 211 (314)
Q Consensus 172 ~~l~~~~~~w~~~~gvDGfRl-Daa~~i~~~f~~~~~~~~~ 211 (314)
+++.+.++..+ +.|+|-+++ |.+-...+.-+.+++..++
T Consensus 197 ~~l~~~~~~~~-~~Gad~I~l~DT~G~a~P~~v~~lv~~l~ 236 (347)
T PLN02746 197 SKVAYVAKELY-DMGCYEISLGDTIGVGTPGTVVPMLEAVM 236 (347)
T ss_pred HHHHHHHHHHH-HcCCCEEEecCCcCCcCHHHHHHHHHHHH
Confidence 46677777776 889988876 6666666666666665543
No 442
>TIGR00858 bioF 8-amino-7-oxononanoate synthase. This model represents 8-amino-7-oxononanoate synthase, the BioF protein of biotin biosynthesis. This model is based on a careful phylogenetic analysis to separate members of this family from 2-amino-3-ketobutyrate and other related pyridoxal phosphate-dependent enzymes. In several species, including Staphylococcus and Coxiella, a candidate 8-amino-7-oxononanoate synthase is confirmed by location in the midst of a biotin biosynthesis operon but scores below the trusted cutoff of this model.
Probab=30.44 E-value=37 Score=31.41 Aligned_cols=28 Identities=18% Similarity=0.052 Sum_probs=23.9
Q ss_pred CCCHHHHHHHHHHHhhCCCEEEEeeeec
Q 021281 86 YGSEHLLKALLHKMKQHKVRAMADIVIN 113 (314)
Q Consensus 86 ~Gt~~df~~lv~~ah~~Gi~VilD~V~N 113 (314)
-|+..+++++++.|+++|+.||+|-+.-
T Consensus 159 ~G~~~~~~~i~~l~~~~~~~li~De~~~ 186 (360)
T TIGR00858 159 DGDIAPLPQLVALAERYGAWLMVDDAHG 186 (360)
T ss_pred CCCCcCHHHHHHHHHHcCcEEEEECccc
Confidence 4556779999999999999999999853
No 443
>PRK07495 4-aminobutyrate aminotransferase; Provisional
Probab=30.36 E-value=1.1e+02 Score=29.96 Aligned_cols=48 Identities=23% Similarity=0.358 Sum_probs=36.4
Q ss_pred CCCEEEeCCCCCCCCCCCCCcccCCCcCCCCCCHHHHHHHHHHHhhCCCEEEEeeeecccc
Q 021281 56 GFTSVWLPPATHSFAPEGYLPQNLYSLNSSYGSEHLLKALLHKMKQHKVRAMADIVINHRV 116 (314)
Q Consensus 56 G~~~I~l~Pi~~~~~~~gY~~~d~~~id~~~Gt~~df~~lv~~ah~~Gi~VilD~V~NH~~ 116 (314)
.+.+|++-|++.. .|..+ -+.+-++++.+.|+++|+-+|+|=|..-.+
T Consensus 198 ~iaavi~EPv~g~---~G~~~----------~~~~~l~~l~~l~~~~g~llI~DEv~tG~g 245 (425)
T PRK07495 198 RVAAIIIEPVQGE---GGFYP----------APAAFMKALRELCDQHGILLIADEVQTGFA 245 (425)
T ss_pred ceEEEEECCccCC---CCCcc----------CCHHHHHHHHHHHHHcCCEEEEechhhcCC
Confidence 4889999999754 24222 135779999999999999999999975443
No 444
>cd04722 TIM_phosphate_binding TIM barrel proteins share a structurally conserved phosphate binding motif and in general share an eight beta/alpha closed barrel structure. Specific for this family is the conserved phosphate binding site at the edges of strands 7 and 8. The phosphate comes either from the substrate, as in the case of inosine monophosphate dehydrogenase (IMPDH), or from ribulose-5-phosphate 3-epimerase (RPE) or from cofactors, like FMN.
Probab=30.35 E-value=2.5e+02 Score=22.87 Aligned_cols=64 Identities=14% Similarity=0.126 Sum_probs=43.1
Q ss_pred eeEEEEeeCCCCCCchHHHHHHhhhHHHHcCCCEEEeCCCCCCCCCCCCCcccCCCcCCCCCCHHHHHHHHHHHhhC--C
Q 021281 26 EILFQGFNWESCKHDWWRNLERKVPDISKSGFTSVWLPPATHSFAPEGYLPQNLYSLNSSYGSEHLLKALLHKMKQH--K 103 (314)
Q Consensus 26 ~~i~q~F~w~~~~~g~~~gi~~~ldyl~~lG~~~I~l~Pi~~~~~~~gY~~~d~~~id~~~Gt~~df~~lv~~ah~~--G 103 (314)
-+++|.+.-+ ..+.+......++++|++.|.|..-. +|. .+...++++++++. +
T Consensus 59 ~~~~~~~~~~-----~~~~~~~~a~~~~~~g~d~v~l~~~~------~~~-------------~~~~~~~~~~i~~~~~~ 114 (200)
T cd04722 59 PLGVQLAIND-----AAAAVDIAAAAARAAGADGVEIHGAV------GYL-------------AREDLELIRELREAVPD 114 (200)
T ss_pred cEEEEEccCC-----chhhhhHHHHHHHHcCCCEEEEeccC------CcH-------------HHHHHHHHHHHHHhcCC
Confidence 4677777644 12222222567889999999987432 222 57778888888887 8
Q ss_pred CEEEEeeeec
Q 021281 104 VRAMADIVIN 113 (314)
Q Consensus 104 i~VilD~V~N 113 (314)
+.|++.+...
T Consensus 115 ~~v~~~~~~~ 124 (200)
T cd04722 115 VKVVVKLSPT 124 (200)
T ss_pred ceEEEEECCC
Confidence 9999988654
No 445
>PRK06108 aspartate aminotransferase; Provisional
Probab=30.33 E-value=55 Score=30.85 Aligned_cols=30 Identities=27% Similarity=0.282 Sum_probs=26.3
Q ss_pred CHHHHHHHHHHHhhCCCEEEEeeeeccccC
Q 021281 88 SEHLLKALLHKMKQHKVRAMADIVINHRVG 117 (314)
Q Consensus 88 t~~df~~lv~~ah~~Gi~VilD~V~NH~~~ 117 (314)
+.++++++++.|+++|+-||+|-++-+...
T Consensus 176 ~~~~~~~l~~~~~~~~~~li~De~y~~~~~ 205 (382)
T PRK06108 176 SRDDLRAILAHCRRHGLWIVADEVYERLYY 205 (382)
T ss_pred CHHHHHHHHHHHHHCCcEEEEehhhhhhcc
Confidence 678999999999999999999988776543
No 446
>cd04886 ACT_ThrD-II-like C-terminal ACT domain of biodegradative (catabolic) threonine dehydratase II (ThrD-II) and other related ACT domains. This CD includes the C-terminal ACT domain of biodegradative (catabolic) threonine dehydratase II (ThrD-II) and other related ACT domains. The Escherichia coli tdcB gene product, ThrD-II, anaerobically catalyzes the pyridoxal phosphate-dependent dehydration of L-threonine and L-serine to ammonia and to alpha-ketobutyrate and pyruvate, respectively. Tetrameric ThrD-II is subject to allosteric activation by AMP, inhibition by alpha-keto acids, and catabolite inactivation by several metabolites of glycolysis and the citric acid cycle. Also included in this CD are N-terminal ACT domains present in smaller (~170 a.a.) archaeal proteins of unknown function. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=30.29 E-value=1.4e+02 Score=20.06 Aligned_cols=60 Identities=10% Similarity=0.176 Sum_probs=38.2
Q ss_pred HHHhhhHHHHcCCCEEEeCCCCCCC-CCCCCCcccCCCcCCCCCCHHHHHHHHHHHhhCCCEEE
Q 021281 45 LERKVPDISKSGFTSVWLPPATHSF-APEGYLPQNLYSLNSSYGSEHLLKALLHKMKQHKVRAM 107 (314)
Q Consensus 45 i~~~ldyl~~lG~~~I~l~Pi~~~~-~~~gY~~~d~~~id~~~Gt~~df~~lv~~ah~~Gi~Vi 107 (314)
+.+.+..|++.|++-+-+....... ...++.... ..++- ...+++..+++++.+.|.+|.
T Consensus 12 L~~i~~~i~~~~~nI~~i~~~~~~~~~~~~~~~~~-i~v~~--~~~~~l~~l~~~l~~~g~~~~ 72 (73)
T cd04886 12 LAKLLAVIAEAGANIIEVSHDRAFKTLPLGEVEVE-LTLET--RGAEHIEEIIAALREAGYDVR 72 (73)
T ss_pred HHHHHHHHHHcCCCEEEEEEEeccCCCCCceEEEE-EEEEe--CCHHHHHHHHHHHHHcCCEEe
Confidence 4555677888899887664322111 123444442 33443 357889999999999999874
No 447
>PF01276 OKR_DC_1: Orn/Lys/Arg decarboxylase, major domain; InterPro: IPR000310 Pyridoxal-dependent decarboxylases are bacterial proteins acting on ornithine, lysine, arginine and related substrates []. One of the regions of sequence similarity contains a conserved lysine residue, which is the site of attachment of the pyridoxal-phosphate group.; GO: 0003824 catalytic activity; PDB: 1C4K_A 1ORD_A 2X3L_B 3Q16_C 3N75_A 2VYC_D.
Probab=30.22 E-value=19 Score=35.26 Aligned_cols=26 Identities=19% Similarity=0.261 Sum_probs=21.6
Q ss_pred CCCCHHHHHHHHHHHhhCCCEEEEee
Q 021281 85 SYGSEHLLKALLHKMKQHKVRAMADI 110 (314)
Q Consensus 85 ~~Gt~~df~~lv~~ah~~Gi~VilD~ 110 (314)
-+|..-|++.+++.||++|+.|++|=
T Consensus 179 Y~Gv~~di~~I~~~~h~~~~~llvDE 204 (417)
T PF01276_consen 179 YYGVCYDIKEIAEICHKHGIPLLVDE 204 (417)
T ss_dssp TTSEEE-HHHHHHHHCCTECEEEEE-
T ss_pred CCeEEECHHHHHHHhcccCCEEEEEc
Confidence 45677899999999999999999985
No 448
>TIGR01437 selA_rel uncharacterized pyridoxal phosphate-dependent enzyme. This model describes a protein related to a number of pyridoxal phosphate-dependent enzymes, and in particular to selenocysteine synthase (SelA), which converts Ser to selenocysteine on its tRNA. While resembling SelA, this protein is found only in species that have a better candidate SelA or else lack the other genes (selB, selC, and selD) required for selenocysteine incorporation.
Probab=30.08 E-value=39 Score=32.16 Aligned_cols=28 Identities=11% Similarity=0.108 Sum_probs=23.8
Q ss_pred CCCHHHHHHHHHHHhhCCCEEEEeeeec
Q 021281 86 YGSEHLLKALLHKMKQHKVRAMADIVIN 113 (314)
Q Consensus 86 ~Gt~~df~~lv~~ah~~Gi~VilD~V~N 113 (314)
.|+..+++++++.||++|+.||+|-+-.
T Consensus 162 ~g~~~~~~~i~~~a~~~gi~vivD~a~~ 189 (363)
T TIGR01437 162 QKSMLSVEDAAQVAQEHNLPLIVDAAAE 189 (363)
T ss_pred cCCcCCHHHHHHHHHHcCCeEEEECCCC
Confidence 4666778899999999999999999753
No 449
>COG0436 Aspartate/tyrosine/aromatic aminotransferase [Amino acid transport and metabolism]
Probab=29.93 E-value=59 Score=31.46 Aligned_cols=32 Identities=22% Similarity=0.304 Sum_probs=29.5
Q ss_pred CHHHHHHHHHHHhhCCCEEEEeeeeccccCCC
Q 021281 88 SEHLLKALLHKMKQHKVRAMADIVINHRVGTT 119 (314)
Q Consensus 88 t~~df~~lv~~ah~~Gi~VilD~V~NH~~~~~ 119 (314)
+.++|+++++-|.++|+-||.|-++.+...+.
T Consensus 181 ~~~~l~~i~~~a~~~~i~ii~DEiY~~l~yd~ 212 (393)
T COG0436 181 SKEELKAIVELAREHDIIIISDEIYEELVYDG 212 (393)
T ss_pred CHHHHHHHHHHHHHcCeEEEEehhhhhcccCC
Confidence 58999999999999999999999999988764
No 450
>PF10096 DUF2334: Uncharacterized protein conserved in bacteria (DUF2334); InterPro: IPR018763 This group of proteins has no known function.
Probab=29.86 E-value=2.6e+02 Score=25.02 Aligned_cols=66 Identities=9% Similarity=0.037 Sum_probs=47.9
Q ss_pred CCCCCchHHHHHHhhhHHHHcCCCEEE-eCCCCCCCCCCCCCcccCCCcCCCCCCHHHHHHHHHHHhhCCCEEEEe
Q 021281 35 ESCKHDWWRNLERKVPDISKSGFTSVW-LPPATHSFAPEGYLPQNLYSLNSSYGSEHLLKALLHKMKQHKVRAMAD 109 (314)
Q Consensus 35 ~~~~~g~~~gi~~~ldyl~~lG~~~I~-l~Pi~~~~~~~gY~~~d~~~id~~~Gt~~df~~lv~~ah~~Gi~VilD 109 (314)
|.....+++.+.+..++|.+.||-... +.|.+..+. .++ +-++-...+|.+.++.+.++|=.|+|-
T Consensus 8 DVsP~~~~~~l~~i~d~l~~~~ipf~v~vIP~~~d~~-~~~--------~~~l~~~~~f~~~L~~~~~~Gg~I~lH 74 (243)
T PF10096_consen 8 DVSPFSDLEKLKEIADYLYKYGIPFSVAVIPVYVDPN-GGI--------TVNLSDNPEFVEYLRYLQARGGEIVLH 74 (243)
T ss_pred CCCCCCCHHHHHHHHHHHHHCCCCEEEEEEecccCCC-Ccc--------cccchhhHHHHHHHHHHHhcCCEEEEE
Confidence 344445799999999999999998553 366665542 222 333445678999999999999999984
No 451
>cd05710 SIS_1 A subgroup of the SIS domain. SIS (Sugar ISomerase) domains are found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars.
Probab=29.74 E-value=58 Score=25.53 Aligned_cols=31 Identities=16% Similarity=0.108 Sum_probs=25.1
Q ss_pred cCCCcCCCCCCHHHHHHHHHHHhhCCCEEEE
Q 021281 78 NLYSLNSSYGSEHLLKALLHKMKQHKVRAMA 108 (314)
Q Consensus 78 d~~~id~~~Gt~~df~~lv~~ah~~Gi~Vil 108 (314)
|..-+=+.-|..++..+.++.|+++|++||.
T Consensus 49 dl~I~iS~SG~t~~~~~~~~~a~~~g~~vi~ 79 (120)
T cd05710 49 SVVILASHSGNTKETVAAAKFAKEKGATVIG 79 (120)
T ss_pred cEEEEEeCCCCChHHHHHHHHHHHcCCeEEE
Confidence 3333346778889999999999999999988
No 452
>COG0626 MetC Cystathionine beta-lyases/cystathionine gamma-synthases [Amino acid transport and metabolism]
Probab=29.70 E-value=63 Score=31.45 Aligned_cols=61 Identities=11% Similarity=0.018 Sum_probs=38.7
Q ss_pred HHcCCCEEEeCCCCCCC-----CCCCCCcccCCCcCCCCCCHHHHHHHHHHHhhCCCEEEEeeeec
Q 021281 53 SKSGFTSVWLPPATHSF-----APEGYLPQNLYSLNSSYGSEHLLKALLHKMKQHKVRAMADIVIN 113 (314)
Q Consensus 53 ~~lG~~~I~l~Pi~~~~-----~~~gY~~~d~~~id~~~Gt~~df~~lv~~ah~~Gi~VilD~V~N 113 (314)
++.||+..+.-|--... ......++=.-.+..-.-...|++++.+.||++|+.||+|-.+-
T Consensus 124 ~~~gi~~~~~d~~~~~~~~~~~~~~~tk~v~lEtPsNP~l~v~DI~~i~~~A~~~g~~vvVDNTfa 189 (396)
T COG0626 124 QKFGVEVTFVDPGDDEALEAAIKEPNTKLVFLETPSNPLLEVPDIPAIARLAKAYGALVVVDNTFA 189 (396)
T ss_pred HhcCeEEEEECCCChHHHHHHhcccCceEEEEeCCCCcccccccHHHHHHHHHhcCCEEEEECCcc
Confidence 45888888876643211 11123333223333344456799999999999999999986554
No 453
>cd06450 DOPA_deC_like DOPA decarboxylase family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to DOPA/tyrosine decarboxylase (DDC), histidine decarboxylase (HDC), and glutamate decarboxylase (GDC). DDC is active as a dimer and catalyzes the decarboxylation of tyrosine. GDC catalyzes the decarboxylation of glutamate and HDC catalyzes the decarboxylation of histidine.
Probab=29.64 E-value=42 Score=31.05 Aligned_cols=32 Identities=9% Similarity=0.098 Sum_probs=27.0
Q ss_pred CCCCCCHHHHHHHHHHHhhCCCEEEEeeeecc
Q 021281 83 NSSYGSEHLLKALLHKMKQHKVRAMADIVINH 114 (314)
Q Consensus 83 d~~~Gt~~df~~lv~~ah~~Gi~VilD~V~NH 114 (314)
+...|..++++++++.||++|+.|++|-+...
T Consensus 158 ~~~tG~~~~~~~i~~~~~~~~~~l~vD~a~~~ 189 (345)
T cd06450 158 TTDTGAIDPLEEIADLAEKYDLWLHVDAAYGG 189 (345)
T ss_pred cCCCCCCCCHHHHHHHHHHhCCeEEEechhhH
Confidence 34567778899999999999999999998543
No 454
>PLN02721 threonine aldolase
Probab=29.56 E-value=59 Score=30.09 Aligned_cols=24 Identities=13% Similarity=0.016 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHhhCCCEEEEeeee
Q 021281 89 EHLLKALLHKMKQHKVRAMADIVI 112 (314)
Q Consensus 89 ~~df~~lv~~ah~~Gi~VilD~V~ 112 (314)
.++++++++.||++|+.||+|-..
T Consensus 157 ~~~l~~l~~l~~~~g~~livD~a~ 180 (353)
T PLN02721 157 VEYTDKVGELAKRHGLKLHIDGAR 180 (353)
T ss_pred HHHHHHHHHHHHHcCCEEEEEchh
Confidence 578999999999999999999753
No 455
>cd03416 CbiX_SirB_N Sirohydrochlorin cobalt chelatase (CbiX) and sirohydrochlorin iron chelatase (SirB), N-terminal domain. SirB catalyzes the ferro-chelation of sirohydrochlorin to siroheme, the prosthetic group of sulfite and nitrite reductases. CbiX is a cobaltochelatase, responsible for the chelation of Co2+ into sirohydrochlorin, an important step in the vitamin B12 biosynthetic pathway. CbiX often contains a C-terminal histidine-rich region that may be important for metal delivery and/or storage, and may also contain an iron-sulfur center. Both are found in a wide range of bacteria. This subgroup also contains single domain proteins from archaea and bacteria which may represent the ancestral form of class II chelatases before domain duplication occurred.
Probab=29.34 E-value=50 Score=24.90 Aligned_cols=28 Identities=14% Similarity=0.204 Sum_probs=22.9
Q ss_pred HHHHHhhhHHHHcCCCEEEeCCCCCCCC
Q 021281 43 RNLERKVPDISKSGFTSVWLPPATHSFA 70 (314)
Q Consensus 43 ~gi~~~ldyl~~lG~~~I~l~Pi~~~~~ 70 (314)
-.+.+.++.+.+.|++.|.+.|.+-..+
T Consensus 44 p~~~~~l~~l~~~g~~~v~vvPlfl~~G 71 (101)
T cd03416 44 PSLAEALDELAAQGATRIVVVPLFLLAG 71 (101)
T ss_pred CCHHHHHHHHHHcCCCEEEEEeeEeCCC
Confidence 4566778888899999999999986653
No 456
>TIGR03581 EF_0839 conserved hypothetical protein EF_0839/AHA_3917. Members of this family of relatively uncommon proteins are found in both Gram-positive (e.g. Enterococcus faecalis) and Gram-negative (e.g. Aeromonas hydrophila) bacteria, as part of a cluster of conserved proteins. The function is unknown.
Probab=29.28 E-value=1.6e+02 Score=26.29 Aligned_cols=59 Identities=19% Similarity=0.245 Sum_probs=40.0
Q ss_pred HHHHhhhHHHHcCCCEEEeCCCCCCC------------CCCCCCcccCCCcCCCCC-CHHHHHHHHHHHhhCCCEEEE
Q 021281 44 NLERKVPDISKSGFTSVWLPPATHSF------------APEGYLPQNLYSLNSSYG-SEHLLKALLHKMKQHKVRAMA 108 (314)
Q Consensus 44 gi~~~ldyl~~lG~~~I~l~Pi~~~~------------~~~gY~~~d~~~id~~~G-t~~df~~lv~~ah~~Gi~Vil 108 (314)
.++..+..|++||...|=..|+---. ..+|+ + +.|--| +.+-|.++++.|-+.|++-++
T Consensus 136 ~vetAiaml~dmG~~SiKffPM~Gl~~leE~~avA~aca~~g~-----~-lEPTGGIdl~Nf~~I~~i~ldaGv~kvi 207 (236)
T TIGR03581 136 PIETAIAMLKDMGGSSVKFFPMGGLKHLEEYAAVAKACAKHGF-----Y-LEPTGGIDLDNFEEIVQIALDAGVEKVI 207 (236)
T ss_pred eHHHHHHHHHHcCCCeeeEeecCCcccHHHHHHHHHHHHHcCC-----c-cCCCCCccHHhHHHHHHHHHHcCCCeec
Confidence 35778889999999999999975222 12342 2 455544 356677777777777776655
No 457
>TIGR00474 selA seryl-tRNA(sec) selenium transferase. In bacteria, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes SelA. This model excludes homologs that appear to differ in function from Frankia alni, Helicobacter pylori, Methanococcus jannaschii and other archaea, and so on.
Probab=29.05 E-value=39 Score=33.51 Aligned_cols=23 Identities=22% Similarity=0.343 Sum_probs=21.0
Q ss_pred CHHHHHHHHHHHhhCCCEEEEee
Q 021281 88 SEHLLKALLHKMKQHKVRAMADI 110 (314)
Q Consensus 88 t~~df~~lv~~ah~~Gi~VilD~ 110 (314)
...+++++++.||++|+.||+|.
T Consensus 230 ~~~dl~~I~~la~~~g~~vivD~ 252 (454)
T TIGR00474 230 EEVSIAELVALGREHGLPVMEDL 252 (454)
T ss_pred CCCCHHHHHHHHHHcCCeEEEEC
Confidence 46789999999999999999995
No 458
>PRK05764 aspartate aminotransferase; Provisional
Probab=29.02 E-value=60 Score=30.81 Aligned_cols=28 Identities=18% Similarity=0.266 Sum_probs=24.1
Q ss_pred CHHHHHHHHHHHhhCCCEEEEeeeeccc
Q 021281 88 SEHLLKALLHKMKQHKVRAMADIVINHR 115 (314)
Q Consensus 88 t~~df~~lv~~ah~~Gi~VilD~V~NH~ 115 (314)
+.++++++++.|+++|+-||+|-++...
T Consensus 182 ~~~~~~~l~~~a~~~~~~ii~De~y~~~ 209 (393)
T PRK05764 182 SPEELEAIADVAVEHDIWVLSDEIYEKL 209 (393)
T ss_pred CHHHHHHHHHHHHHCCcEEEEeccccce
Confidence 3689999999999999999999776543
No 459
>smart00518 AP2Ec AP endonuclease family 2. These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites
Probab=29.02 E-value=2.1e+02 Score=25.59 Aligned_cols=24 Identities=13% Similarity=0.206 Sum_probs=19.7
Q ss_pred hHHHHHHhhhHHHHcCCCEEEeCC
Q 021281 41 WWRNLERKVPDISKSGFTSVWLPP 64 (314)
Q Consensus 41 ~~~gi~~~ldyl~~lG~~~I~l~P 64 (314)
..+.+.+.++..+.+|++.|-+.|
T Consensus 82 ~~~~l~~~i~~A~~lGa~~vv~h~ 105 (273)
T smart00518 82 SIERLIDEIKRCEELGIKALVFHP 105 (273)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEcc
Confidence 566788888999999999888754
No 460
>TIGR01265 tyr_nico_aTase tyrosine/nicotianamine aminotransferases. This subfamily of pyridoxal phosphate-dependent enzymes includes known examples of both tyrosine aminotransferase from animals and nicotianamine aminotransferase from barley.
Probab=28.98 E-value=65 Score=30.90 Aligned_cols=30 Identities=20% Similarity=0.231 Sum_probs=26.1
Q ss_pred CHHHHHHHHHHHhhCCCEEEEeeeeccccC
Q 021281 88 SEHLLKALLHKMKQHKVRAMADIVINHRVG 117 (314)
Q Consensus 88 t~~df~~lv~~ah~~Gi~VilD~V~NH~~~ 117 (314)
+.++++++++.|+++|+-||.|-++.+...
T Consensus 187 ~~~~~~~i~~~a~~~~~~ii~De~y~~~~~ 216 (403)
T TIGR01265 187 SRDHLQKIAEVARKLGIPIIADEIYGHMVF 216 (403)
T ss_pred CHHHHHHHHHHHHHCCCEEEEEcccccccc
Confidence 357899999999999999999999876653
No 461
>PRK07777 aminotransferase; Validated
Probab=28.97 E-value=63 Score=30.67 Aligned_cols=29 Identities=24% Similarity=0.291 Sum_probs=25.6
Q ss_pred CHHHHHHHHHHHhhCCCEEEEeeeecccc
Q 021281 88 SEHLLKALLHKMKQHKVRAMADIVINHRV 116 (314)
Q Consensus 88 t~~df~~lv~~ah~~Gi~VilD~V~NH~~ 116 (314)
+.+++++|++.|+++|+.||.|-++.+..
T Consensus 177 ~~~~~~~l~~~~~~~~~~li~De~y~~~~ 205 (387)
T PRK07777 177 TAAELAAIAELAVEHDLLVITDEVYEHLV 205 (387)
T ss_pred CHHHHHHHHHHHHhcCcEEEEeccchhcc
Confidence 46899999999999999999999887655
No 462
>PRK06225 aspartate aminotransferase; Provisional
Probab=28.83 E-value=61 Score=30.68 Aligned_cols=26 Identities=12% Similarity=0.172 Sum_probs=23.6
Q ss_pred CHHHHHHHHHHHhhCCCEEEEeeeec
Q 021281 88 SEHLLKALLHKMKQHKVRAMADIVIN 113 (314)
Q Consensus 88 t~~df~~lv~~ah~~Gi~VilD~V~N 113 (314)
+.++++++++.|+++|+.||.|-++.
T Consensus 175 ~~~~~~~i~~~a~~~~~~ii~De~y~ 200 (380)
T PRK06225 175 TEEEIKEFAEIARDNDAFLLHDCTYR 200 (380)
T ss_pred CHHHHHHHHHHHHHCCcEEEEehhHH
Confidence 37899999999999999999998864
No 463
>cd02873 GH18_IDGF The IDGF's (imaginal disc growth factors) are a family of growth factors identified in insects that include at least five members, some of which are encoded by genes in a tight cluster. The IDGF's have an eight-stranded alpha/beta barrel fold and are related to the glycosyl hydrolase family 18 (GH18) chitinases, but they have an amino acid substitution known to abolish chitinase catalytic activity. IDGFs may have evolved from chitinases to gain new functions as growth factors, interacting with cell surface glycoproteins involved in growth-promoting processes.
Probab=28.67 E-value=65 Score=31.40 Aligned_cols=28 Identities=21% Similarity=0.236 Sum_probs=25.3
Q ss_pred CCHHHHHHHHHHHHHHHHhCCCCEEEec
Q 021281 166 TQHFVRKDIIAWLRWLRNTVGFQDFRFD 193 (314)
Q Consensus 166 ~~p~v~~~l~~~~~~w~~~~gvDGfRlD 193 (314)
.+++.|+.+++.+..+++++|+||+-+|
T Consensus 101 ~~~~~R~~Fi~siv~~l~~~~fDGidiD 128 (413)
T cd02873 101 ESSESRNAFINSAHSLLKTYGFDGLDLA 128 (413)
T ss_pred CCHHHHHHHHHHHHHHHHHcCCCCeEee
Confidence 3688999999999888889999999998
No 464
>cd00019 AP2Ec AP endonuclease family 2; These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites; the alignment also contains hexulose-6-phosphate isomerases, enzymes that catalyze the epimerization of D-arabino-6-hexulose 3-phosphate to D-fructose 6-phosphate, via cleaving the phosphoesterbond with the sugar.
Probab=28.64 E-value=1.6e+02 Score=26.60 Aligned_cols=65 Identities=12% Similarity=0.137 Sum_probs=43.5
Q ss_pred hHHHHHHhhhHHHHcCCCEEEeCCCCCCCCCCCCCcccCCCcCCCCCCHHHHHHHHHHHhhCCCEEEEeeeecc
Q 021281 41 WWRNLERKVPDISKSGFTSVWLPPATHSFAPEGYLPQNLYSLNSSYGSEHLLKALLHKMKQHKVRAMADIVINH 114 (314)
Q Consensus 41 ~~~gi~~~ldyl~~lG~~~I~l~Pi~~~~~~~gY~~~d~~~id~~~Gt~~df~~lv~~ah~~Gi~VilD~V~NH 114 (314)
.++.+...++..+.+|++.|-+.|-... +......+. -..+.+++|++.|.+.||+|.+.-+.+.
T Consensus 83 ~~~~~~~~i~~A~~lG~~~v~~~~g~~~----~~~~~~~~~-----~~~~~l~~l~~~a~~~gi~l~lEn~~~~ 147 (279)
T cd00019 83 SIERLKDEIERCEELGIRLLVFHPGSYL----GQSKEEGLK-----RVIEALNELIDKAETKGVVIALETMAGQ 147 (279)
T ss_pred HHHHHHHHHHHHHHcCCCEEEECCCCCC----CCCHHHHHH-----HHHHHHHHHHHhccCCCCEEEEeCCCCC
Confidence 6788899999999999999887553211 000000000 0125688888888899999999877665
No 465
>TIGR01976 am_tr_V_VC1184 cysteine desulfurase family protein, VC1184 subfamily. This model describes a subfamily of probable pyridoxal phosphate-dependent enzymes in the aminotransferase class V family (pfam00266). The most closely related characterized proteins are active as cysteine desulfurases, selenocysteine lyases, or both; some are involved in FeS cofactor biosynthesis and are designated NifS. An active site Cys residue present in those sequences, in motifs resembling GHHC or GSAC, is not found in this family. The function of members of this family is unknown, but seems unlike to be as an aminotransferase.
Probab=28.64 E-value=50 Score=31.34 Aligned_cols=31 Identities=19% Similarity=0.176 Sum_probs=27.2
Q ss_pred CcCCCCCCHHHHHHHHHHHhhCCCEEEEeee
Q 021281 81 SLNSSYGSEHLLKALLHKMKQHKVRAMADIV 111 (314)
Q Consensus 81 ~id~~~Gt~~df~~lv~~ah~~Gi~VilD~V 111 (314)
.++..-|...+++++++.||++|+.||+|-+
T Consensus 164 ~~~n~tG~~~~~~~i~~~~~~~~~~~ivD~a 194 (397)
T TIGR01976 164 AASNTLGSIVDLAAITELVHAAGALVVVDAV 194 (397)
T ss_pred CCCCCCCccCCHHHHHHHHHHcCCEEEEehh
Confidence 4556678888999999999999999999996
No 466
>TIGR03301 PhnW-AepZ 2-aminoethylphosphonate aminotransferase. This family includes a number of 2-aminoethylphosphonate aminotransferases, some of which are indicated to operate in the catabolism of 2-aminoethylphosphonate (AEP) and others which are involved in the biosynthesis of the same compound. The catabolic enzyme (PhnW, ) is known to use pyruvate:alanine as the transfer partner and is modeled by the equivalog-level alignment (TIGR02326). The PhnW family is apparently a branch of a larger tree including genes (AepZ) adjacent to others responsible for the biosynthesis of phosphonoacetaldehyde. The identity of the transfer partner is unknown for these enzymes and considering the reversed flux compared to PhnW, it may very well be different.
Probab=28.61 E-value=67 Score=29.64 Aligned_cols=31 Identities=16% Similarity=0.210 Sum_probs=26.6
Q ss_pred cCCCCCCHHHHHHHHHHHhhCCCEEEEeeee
Q 021281 82 LNSSYGSEHLLKALLHKMKQHKVRAMADIVI 112 (314)
Q Consensus 82 id~~~Gt~~df~~lv~~ah~~Gi~VilD~V~ 112 (314)
.++..|+..+++++++.||++|+-+|+|-+.
T Consensus 134 ~~~~~G~~~~~~~i~~l~~~~~~~livD~~~ 164 (355)
T TIGR03301 134 HETTTGILNPLEAIAKVARSHGAVLIVDAMS 164 (355)
T ss_pred cCCcccchhHHHHHHHHHHHcCCEEEEEecc
Confidence 4456788889999999999999999999753
No 467
>cd02803 OYE_like_FMN_family Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=28.61 E-value=2.6e+02 Score=25.90 Aligned_cols=61 Identities=16% Similarity=0.305 Sum_probs=35.3
Q ss_pred HHhhhHHHHcCCCEEEeCCCCCCCCCCCCCcccCCC-----cCCCCCC-HH----HHHHHHHHHhhC---CCEEEEeeee
Q 021281 46 ERKVPDISKSGFTSVWLPPATHSFAPEGYLPQNLYS-----LNSSYGS-EH----LLKALLHKMKQH---KVRAMADIVI 112 (314)
Q Consensus 46 ~~~ldyl~~lG~~~I~l~Pi~~~~~~~gY~~~d~~~-----id~~~Gt-~~----df~~lv~~ah~~---Gi~VilD~V~ 112 (314)
.+....+++.||++|.|.. .|||-+..|.. -.-+||. .+ -+.+.|+++++. ++.|.+++-.
T Consensus 144 ~~aA~~a~~aGfDgveih~------~~gyL~~qFlsp~~n~R~d~yGgs~enr~r~~~eii~avr~~~g~d~~i~vris~ 217 (327)
T cd02803 144 AAAARRAKEAGFDGVEIHG------AHGYLLSQFLSPYTNKRTDEYGGSLENRARFLLEIVAAVREAVGPDFPVGVRLSA 217 (327)
T ss_pred HHHHHHHHHcCCCEEEEcc------hhhhHHHHhcCccccCCCcccCCCHHHHHHHHHHHHHHHHHHcCCCceEEEEech
Confidence 3445577889999999873 36773332222 2234443 32 245666666654 6777777643
No 468
>TIGR01822 2am3keto_CoA 2-amino-3-ketobutyrate coenzyme A ligase. This model represents a narrowly defined clade of animal and bacterial (almost exclusively Proteobacterial) 2-amino-3-ketobutyrate--CoA ligase. This enzyme can act in threonine catabolism. The closest homolog from Bacillus subtilis, and sequences like it, may be functionally equivalent but were not included in the model because of difficulty in finding reports of function.
Probab=28.58 E-value=52 Score=31.19 Aligned_cols=27 Identities=15% Similarity=0.038 Sum_probs=23.0
Q ss_pred CCCHHHHHHHHHHHhhCCCEEEEeeee
Q 021281 86 YGSEHLLKALLHKMKQHKVRAMADIVI 112 (314)
Q Consensus 86 ~Gt~~df~~lv~~ah~~Gi~VilD~V~ 112 (314)
.|...+++++++.||++|+.||+|-+.
T Consensus 183 tG~~~~l~~i~~la~~~~~~li~De~~ 209 (393)
T TIGR01822 183 DGVIAPLDEICDLADKYDALVMVDECH 209 (393)
T ss_pred CCCcCCHHHHHHHHHHcCCEEEEECCc
Confidence 345566899999999999999999995
No 469
>PLN00175 aminotransferase family protein; Provisional
Probab=28.55 E-value=65 Score=31.14 Aligned_cols=30 Identities=20% Similarity=0.163 Sum_probs=26.6
Q ss_pred CHHHHHHHHHHHhhCCCEEEEeeeeccccC
Q 021281 88 SEHLLKALLHKMKQHKVRAMADIVINHRVG 117 (314)
Q Consensus 88 t~~df~~lv~~ah~~Gi~VilD~V~NH~~~ 117 (314)
+.++++++++.|+++|+-||.|-++.+...
T Consensus 205 s~~~l~~l~~~a~~~~~~ii~De~Y~~l~~ 234 (413)
T PLN00175 205 TREELELIASLCKENDVLAFTDEVYDKLAF 234 (413)
T ss_pred CHHHHHHHHHHHHHcCcEEEEecccCcccc
Confidence 468999999999999999999999887653
No 470
>PRK13520 L-tyrosine decarboxylase; Provisional
Probab=28.47 E-value=40 Score=31.53 Aligned_cols=30 Identities=10% Similarity=0.104 Sum_probs=26.3
Q ss_pred CCCCCHHHHHHHHHHHhhCCCEEEEeeeec
Q 021281 84 SSYGSEHLLKALLHKMKQHKVRAMADIVIN 113 (314)
Q Consensus 84 ~~~Gt~~df~~lv~~ah~~Gi~VilD~V~N 113 (314)
...|+..+++++.+.||++|+.|++|-+..
T Consensus 162 ~~tG~~~~l~~I~~l~~~~g~~livD~a~~ 191 (371)
T PRK13520 162 TELGQVDPIPELSKIALENGIFLHVDAAFG 191 (371)
T ss_pred cCCcccCCHHHHHHHHHHcCCCEEEEecch
Confidence 456888899999999999999999999643
No 471
>TIGR00666 PBP4 D-alanyl-D-alanine carboxypeptidase, serine-type, PBP4 family. In E. coli, this protein is known as penicillin binding protein 4 (dacB). A signal sequence is cleaved from a precursor form. The protein is described as periplasmic in E. coli (Gram-negative) and extracellular in Actinomadura R39 (Gram-positive). Unlike some other proteins with similar activity, it does not form transpeptidation. It is not essential for viability. This family is related to class A beta-lactamases.
Probab=28.46 E-value=1.2e+02 Score=28.74 Aligned_cols=76 Identities=11% Similarity=0.151 Sum_probs=50.4
Q ss_pred HHHHHHhhhHHHHcCCCEEEeCCCCCCCC-CCCCCcccCCC---cCCCCCCHHHHHHHHHHHhhCCCEEEE-eeeecccc
Q 021281 42 WRNLERKVPDISKSGFTSVWLPPATHSFA-PEGYLPQNLYS---LNSSYGSEHLLKALLHKMKQHKVRAMA-DIVINHRV 116 (314)
Q Consensus 42 ~~gi~~~ldyl~~lG~~~I~l~Pi~~~~~-~~gY~~~d~~~---id~~~Gt~~df~~lv~~ah~~Gi~Vil-D~V~NH~~ 116 (314)
-..+...+--|..||-++-|-++++.... ..|=-.-|.+- =||.++ .++|.+|+++++++||+-|= |++++-.-
T Consensus 19 ~~KL~Tt~aAL~~LG~d~r~~T~v~~~g~~~~g~l~G~L~i~G~GDP~L~-~~~L~~la~~l~~~Gi~~i~G~v~~D~s~ 97 (345)
T TIGR00666 19 TQKVITAAAALLQLGPQFRFTTTVETKGNVENGNLKGNLVLRFGGDPTLK-RQDIRNLVATLKKSGVKQIDGNVLVDTSA 97 (345)
T ss_pred HHHHHHHHHHHHhcCCCCceeeEEEecCcccCCcccccEEEEeecCCCcC-HHHHHHHHHHHHHcCCcEEEeeEEEEccc
Confidence 34455556677888999988888875531 11111113332 368887 46799999999999998663 78886544
Q ss_pred CC
Q 021281 117 GT 118 (314)
Q Consensus 117 ~~ 118 (314)
-.
T Consensus 98 f~ 99 (345)
T TIGR00666 98 FS 99 (345)
T ss_pred cc
Confidence 43
No 472
>TIGR03569 NeuB_NnaB N-acetylneuraminate synthase. This family is a subset of the Pfam model pfam03102 and is believed to include only authentic NeuB N-acetylneuraminate (sialic acid) synthase enzymes. The majority of the genes identified by this model are observed adjacent to both the NeuA and NeuC genes which together effect the biosynthesis of CMP-N-acetylneuraminate from UDP-N-acetylglucosamine.
Probab=28.35 E-value=1.6e+02 Score=27.98 Aligned_cols=71 Identities=14% Similarity=0.116 Sum_probs=45.8
Q ss_pred CchHHHHHHhhhHHHHcCCCEEEeCCCCCCC-----CCC-CCCccc------CCCcCCCCC-CHHHHHHHHHHHhhCCCE
Q 021281 39 HDWWRNLERKVPDISKSGFTSVWLPPATHSF-----APE-GYLPQN------LYSLNSSYG-SEHLLKALLHKMKQHKVR 105 (314)
Q Consensus 39 ~g~~~gi~~~ldyl~~lG~~~I~l~Pi~~~~-----~~~-gY~~~d------~~~id~~~G-t~~df~~lv~~ah~~Gi~ 105 (314)
+|+++...+-++-.++.|+++|=+--..... ... .|...+ .|.+-.++. +.++++.|.+.|++.||.
T Consensus 12 ~Gdl~~A~~lI~~A~~aGadaVKfQt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~e~~~~L~~~~~~~Gi~ 91 (329)
T TIGR03569 12 NGSLELAKKLVDAAAEAGADAVKFQTFKAEDLVSKNAPKAEYQKINTGAEESQLEMLKKLELSEEDHRELKEYCESKGIE 91 (329)
T ss_pred cCcHHHHHHHHHHHHHhCCCEEEeeeCCHHHhhCcccccccccccCCcCCCcHHHHHHHhCCCHHHHHHHHHHHHHhCCc
Confidence 3689999999999999999999663321000 011 222221 111111122 468999999999999999
Q ss_pred EEEe
Q 021281 106 AMAD 109 (314)
Q Consensus 106 VilD 109 (314)
++-.
T Consensus 92 ~~st 95 (329)
T TIGR03569 92 FLST 95 (329)
T ss_pred EEEE
Confidence 9873
No 473
>cd01171 YXKO-related B.subtilis YXKO protein of unknown function and related proteins. Based on the conservation of the ATP binding site, the substrate binding site and the Mg2+binding site and structural homology this group is a member of the ribokinase-like superfamily.
Probab=28.17 E-value=47 Score=29.63 Aligned_cols=34 Identities=12% Similarity=0.140 Sum_probs=27.8
Q ss_pred cCCCcCCCCCCHHHHHHHHHHHhhCCCEEEEeee
Q 021281 78 NLYSLNSSYGSEHLLKALLHKMKQHKVRAMADIV 111 (314)
Q Consensus 78 d~~~id~~~Gt~~df~~lv~~ah~~Gi~VilD~V 111 (314)
|...|.+.+|+.+..+.+++.++++++.||+|-.
T Consensus 79 d~v~ig~gl~~~~~~~~i~~~~~~~~~pvVlDa~ 112 (254)
T cd01171 79 DAVVIGPGLGRDEEAAEILEKALAKDKPLVLDAD 112 (254)
T ss_pred CEEEEecCCCCCHHHHHHHHHHHhcCCCEEEEcH
Confidence 3444667788878899999999999999999954
No 474
>PRK13237 tyrosine phenol-lyase; Provisional
Probab=28.16 E-value=63 Score=32.10 Aligned_cols=23 Identities=13% Similarity=0.221 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHhhCCCEEEEeee
Q 021281 89 EHLLKALLHKMKQHKVRAMADIV 111 (314)
Q Consensus 89 ~~df~~lv~~ah~~Gi~VilD~V 111 (314)
+++++++.+-|+++||+||+|--
T Consensus 197 ~~~m~~I~elA~~~Gl~Vi~DaA 219 (460)
T PRK13237 197 MANMRAVRELCDKHGIKVFFDAT 219 (460)
T ss_pred HHhHHHHHHHHHHcCCEEEEECc
Confidence 68999999999999999999974
No 475
>TIGR00044 pyridoxal phosphate enzyme, YggS family. Members of this protein family include YggS from Escherichia coli and YBL036C, an uncharacterized pyridoxal protein of Saccharomyces cerevisiae.
Probab=28.11 E-value=87 Score=27.75 Aligned_cols=70 Identities=14% Similarity=0.201 Sum_probs=47.2
Q ss_pred chHHHHHHhhhHHHHcC-CCEEEeCCCCCCCCCCCCCcccCCCcCCCCCCHHHHHHHHHHHhhCC--CEEEEeeee
Q 021281 40 DWWRNLERKVPDISKSG-FTSVWLPPATHSFAPEGYLPQNLYSLNSSYGSEHLLKALLHKMKQHK--VRAMADIVI 112 (314)
Q Consensus 40 g~~~gi~~~ldyl~~lG-~~~I~l~Pi~~~~~~~gY~~~d~~~id~~~Gt~~df~~lv~~ah~~G--i~VilD~V~ 112 (314)
..++.+.++.+.|++.| .....+.|++.... ......+.+.+..-+.+.++.|-+.|++.| ++|.+.+-.
T Consensus 57 ~~~~Ea~~k~~~lr~~~~~~~~~ig~~q~~~~---~~~~~~~~l~~~vds~~~~~~l~~~a~~~~~~~~V~l~vdt 129 (229)
T TIGR00044 57 NYVQELVEKIKLLEDLGKLEWHFIGPLQSNKD---RLVVENFDWVHTIDSLKIAKKLNEQREKLQPPLNVLLQINI 129 (229)
T ss_pred EcHHHHHHHHHHhcccCCceEEEECCCcchHH---HHHhhhcCEEEEECCHHHHHHHHHHHHhcCCCceEEEEEEC
Confidence 36888888888887776 33445566654431 112234666677778999999999998776 677877754
No 476
>PRK07324 transaminase; Validated
Probab=28.06 E-value=75 Score=30.14 Aligned_cols=29 Identities=10% Similarity=0.117 Sum_probs=25.6
Q ss_pred CHHHHHHHHHHHhhCCCEEEEeeeecccc
Q 021281 88 SEHLLKALLHKMKQHKVRAMADIVINHRV 116 (314)
Q Consensus 88 t~~df~~lv~~ah~~Gi~VilD~V~NH~~ 116 (314)
+.++++++++.|+++|+.||.|-++.+..
T Consensus 171 ~~~~l~~i~~~a~~~~~~ii~De~y~~l~ 199 (373)
T PRK07324 171 DRAYLEEIVEIARSVDAYVLSDEVYRPLD 199 (373)
T ss_pred CHHHHHHHHHHHHHCCCEEEEEccccccc
Confidence 67899999999999999999999876544
No 477
>PRK08776 cystathionine gamma-synthase; Provisional
Probab=27.78 E-value=53 Score=31.88 Aligned_cols=29 Identities=7% Similarity=-0.041 Sum_probs=25.4
Q ss_pred CCCCHHHHHHHHHHHhhCCCEEEEeeeec
Q 021281 85 SYGSEHLLKALLHKMKQHKVRAMADIVIN 113 (314)
Q Consensus 85 ~~Gt~~df~~lv~~ah~~Gi~VilD~V~N 113 (314)
-.|...+++++++.||++|+.||+|-++-
T Consensus 157 PtG~v~dl~~I~~la~~~gi~vIvD~a~a 185 (405)
T PRK08776 157 PLLRITDLRFVIEAAHKVGALTVVDNTFL 185 (405)
T ss_pred CCCccCCHHHHHHHHHHcCCEEEEECCCc
Confidence 35677889999999999999999999864
No 478
>PTZ00242 protein tyrosine phosphatase; Provisional
Probab=27.78 E-value=1.9e+02 Score=24.32 Aligned_cols=66 Identities=11% Similarity=0.021 Sum_probs=37.3
Q ss_pred HHHHHhhhHHHHcCCCEEEeC--CCCCCC--CCCCCCcccCCCcCCCCCCH---HHHHHHHHHHhhC----CCEEEE
Q 021281 43 RNLERKVPDISKSGFTSVWLP--PATHSF--APEGYLPQNLYSLNSSYGSE---HLLKALLHKMKQH----KVRAMA 108 (314)
Q Consensus 43 ~gi~~~ldyl~~lG~~~I~l~--Pi~~~~--~~~gY~~~d~~~id~~~Gt~---~df~~lv~~ah~~----Gi~Vil 108 (314)
+.+.+.+..|++.||++|.-. |-++.. ...|....++-..|..-.+. ++|-++|+++.+. |-.|++
T Consensus 27 ~~~~~~l~~L~~~gI~~Iv~l~~~~~~~~~~~~~gi~~~~~p~~D~~~P~~~~i~~~~~~i~~~~~~~~~~g~~V~V 103 (166)
T PTZ00242 27 SNLPLYIKELQRYNVTHLVRVCGPTYDAELLEKNGIEVHDWPFDDGAPPPKAVIDNWLRLLDQEFAKQSTPPETIAV 103 (166)
T ss_pred ccHHHHHHHHHhCCCeEEEecCCCCCCHHHHHHCCCEEEecCCCCCCCCCHHHHHHHHHHHHHHHHhhccCCCeEEE
Confidence 345577899999999999843 322111 12455444433223222233 5667777776654 666665
No 479
>PF00202 Aminotran_3: Aminotransferase class-III; InterPro: IPR005814 Aminotransferases share certain mechanistic features with other pyridoxalphosphate-dependent enzymes, such as the covalent binding of the pyridoxalphosphate group to a lysine residue. On the basis of sequence similarity, these various enzymes can be grouped [] into subfamilies. One of these, called class-III, includes acetylornithine aminotransferase (2.6.1.11 from EC), which catalyzes the transfer of an amino group from acetylornithine to alpha-ketoglutarate, yielding N-acetyl-glutamic-5-semi-aldehyde and glutamic acid; ornithine aminotransferase (2.6.1.13 from EC), which catalyzes the transfer of an amino group from ornithine to alpha-ketoglutarate, yielding glutamic-5-semi-aldehyde and glutamic acid; omega-amino acid--pyruvate aminotransferase (2.6.1.18 from EC), which catalyzes transamination between a variety of omega-amino acids, mono- and diamines, and pyruvate; 4-aminobutyrate aminotransferase (2.6.1.19 from EC) (GABA transaminase), which catalyzes the transfer of an amino group from GABA to alpha-ketoglutarate, yielding succinate semialdehyde and glutamic acid; DAPA aminotransferase (2.6.1.62 from EC), a bacterial enzyme (bioA), which catalyzes an intermediate step in the biosynthesis of biotin, the transamination of 7-keto-8-aminopelargonic acid to form 7,8-diaminopelargonic acid; 2,2-dialkylglycine decarboxylase (4.1.1.64 from EC), a Burkholderia cepacia (Pseudomonas cepacia) enzyme (dgdA) that catalyzes the decarboxylating amino transfer of 2,2-dialkylglycine and pyruvate to dialkyl ketone, alanine and carbon dioxide; glutamate-1-semialdehyde aminotransferase (5.4.3.8 from EC) (GSA); Bacillus subtilis aminotransferases yhxA and yodT; Haemophilus influenzae aminotransferase HI0949; and Caenorhabditis elegans aminotransferase T01B11.2.; GO: 0008483 transaminase activity, 0030170 pyridoxal phosphate binding; PDB: 2JJE_A 2CJH_A 2CIN_A 2JJH_A 2JJF_A 2JJG_A 2CJG_A 2CJD_A 3BS8_A 2YKX_C ....
Probab=27.74 E-value=1.3e+02 Score=28.26 Aligned_cols=63 Identities=21% Similarity=0.262 Sum_probs=43.4
Q ss_pred HHHhhhHHHHcCCCEEEeCCCCCCCCCCCCCcccCCCcCCCCCCHHHHHHHHHHHhhCCCEEEEeeeeccccCCCC
Q 021281 45 LERKVPDISKSGFTSVWLPPATHSFAPEGYLPQNLYSLNSSYGSEHLLKALLHKMKQHKVRAMADIVINHRVGTTQ 120 (314)
Q Consensus 45 i~~~ldyl~~lG~~~I~l~Pi~~~~~~~gY~~~d~~~id~~~Gt~~df~~lv~~ah~~Gi~VilD~V~NH~~~~~~ 120 (314)
+.+.+.....-.+-+|++-||.-.. |.-+ +. .+=+++|.+.|+++|+-+|+|=|..-.+....
T Consensus 166 ~~~~~~~~~~~~iaavivEPi~g~~---G~~~-----~~-----~~~l~~l~~lc~~~gillI~DEV~tG~gRtG~ 228 (339)
T PF00202_consen 166 LEELIAALNADEIAAVIVEPIQGEG---GMIP-----PP-----PEYLRELRELCREHGILLIADEVQTGFGRTGK 228 (339)
T ss_dssp HHHHHHHHHGGGEEEEEEESSBTTT---TSBE-----E------TTHHHHHHHHHHHTT-EEEEEETTTTTTTTSS
T ss_pred HHHHHHhhcCCcEEEEEEecccccc---Cccc-----cc-----cchhhehcccccccccceecccccccccccCC
Confidence 4444555555668899999987432 4322 22 34589999999999999999999887665543
No 480
>cd00616 AHBA_syn 3-amino-5-hydroxybenzoic acid synthase family (AHBA_syn). AHBA_syn family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The members of this CD are involved in various biosynthetic pathways for secondary metabolites. Some well studied proteins in this CD are AHBA_synthase, protein product of pleiotropic regulatory gene degT, Arnb aminotransferase and pilin glycosylation protein. The prototype of this family, the AHBA_synthase, is a dimeric PLP dependent enzyme. AHBA_syn is the terminal enzyme of 3-amino-5-hydroxybenzoic acid (AHBA) formation which is involved in the biosynthesis of ansamycin antibiotics, including rifamycin B. Some members of this CD are involved in 4-amino-6-deoxy-monosaccharide D-perosamine synthesis. Perosamine is an important element in the glycosylation of several cell products, such as antibiotics and lipopolysaccharides of gram-positive and gram-negative bacteria. The pilin glycosylation protein
Probab=27.72 E-value=45 Score=30.87 Aligned_cols=30 Identities=20% Similarity=0.338 Sum_probs=25.8
Q ss_pred CCCCCHHHHHHHHHHHhhCCCEEEEeeeec
Q 021281 84 SSYGSEHLLKALLHKMKQHKVRAMADIVIN 113 (314)
Q Consensus 84 ~~~Gt~~df~~lv~~ah~~Gi~VilD~V~N 113 (314)
.-+|...+++++++.|+++|+.||+|-+-.
T Consensus 114 ~~~G~~~~~~~i~~l~~~~~i~li~D~a~~ 143 (352)
T cd00616 114 HLYGNPADMDAIMAIAKRHGLPVIEDAAQA 143 (352)
T ss_pred CCCCCcCCHHHHHHHHHHcCCeEEEECCCC
Confidence 347888889999999999999999998743
No 481
>cd07945 DRE_TIM_CMS Leptospira interrogans citramalate synthase (CMS) and related proteins, N-terminal catalytic TIM barrel domain. Citramalate synthase (CMS) catalyzes the conversion of pyruvate and acetyl-CoA to (R)-citramalate in the first dedicated step of the citramalate pathway. Citramalate is only found in Leptospira interrogans and a few other microorganisms. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center con
Probab=27.67 E-value=4.8e+02 Score=23.91 Aligned_cols=39 Identities=13% Similarity=0.113 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHhCCCCEEEe-ccCCCCCHHHHHHHHHhhC
Q 021281 172 KDIIAWLRWLRNTVGFQDFRF-DFARGYSAKYVKEYIEGAR 211 (314)
Q Consensus 172 ~~l~~~~~~w~~~~gvDGfRl-Daa~~i~~~f~~~~~~~~~ 211 (314)
+++.+.++... +.|++.+++ |.+....+.-..+++..++
T Consensus 147 ~~~~~~~~~~~-~~G~~~i~l~DT~G~~~P~~v~~l~~~l~ 186 (280)
T cd07945 147 DYVFQLVDFLS-DLPIKRIMLPDTLGILSPFETYTYISDMV 186 (280)
T ss_pred HHHHHHHHHHH-HcCCCEEEecCCCCCCCHHHHHHHHHHHH
Confidence 47777777777 899998887 7777777777777766654
No 482
>PRK00955 hypothetical protein; Provisional
Probab=27.66 E-value=1.4e+02 Score=31.02 Aligned_cols=71 Identities=6% Similarity=-0.046 Sum_probs=43.3
Q ss_pred eEEEEeeCCCCCCchHHHHHHhhhHHHHcCCCEEEeCCCCCCCCC----CCCCcccCCCcCCCCCCHHHHHHHHHH
Q 021281 27 ILFQGFNWESCKHDWWRNLERKVPDISKSGFTSVWLPPATHSFAP----EGYLPQNLYSLNSSYGSEHLLKALLHK 98 (314)
Q Consensus 27 ~i~q~F~w~~~~~g~~~gi~~~ldyl~~lG~~~I~l~Pi~~~~~~----~gY~~~d~~~id~~~Gt~~df~~lv~~ 98 (314)
.|.-.|.-.+|++ +-+.+.+-+++|+++|++.+++.++.+.++. .=|...|++...+-+=..++.++++++
T Consensus 479 ~I~~yfIvGfPGE-TeEDf~et~eflkel~~~~~qV~~fTP~PGT~At~Myytg~dp~~~~~v~v~k~~~ek~~qr 553 (620)
T PRK00955 479 YLVPYLMSSHPGS-TLEDAIELAEYTKDLGYQPEQVQDFYPTPGTLSTTMYYTGLDPLTMEPVYVPKTPKEKAMQR 553 (620)
T ss_pred cEEEEEEEECCCC-CHHHHHHHHHHHHHcCCCcceeeeeecCCCcchhhccccCCCccccCcCCCCCCHHHHHHHH
Confidence 3444455555554 7888899999999999999998887766631 223333443444444444444444443
No 483
>TIGR02326 transamin_PhnW 2-aminoethylphosphonate--pyruvate transaminase. Members of this family are 2-aminoethylphosphonate--pyruvate transaminase. This enzyme acts on the most common type of naturally occurring phosphonate. It interconverts 2-aminoethylphosphonate plus pyruvate with 2-phosphonoacetaldehyde plus alanine. The enzyme phosphonoacetaldehyde hydrolase (EC 3.11.1.1), usually encoded by an adjacent gene, then cleaves the C-P bond of phosphonoacetaldehyde, adding water to yield acetaldehyde plus inorganic phosphate. Species with this pathway generally have an identified phosphonate ABC transporter but do not also have the multisubunit C-P lysase complex as found in Escherichia coli.
Probab=27.64 E-value=52 Score=30.87 Aligned_cols=31 Identities=13% Similarity=0.195 Sum_probs=26.9
Q ss_pred CcCCCCCCHHHHHHHHHHHhhCCCEEEEeee
Q 021281 81 SLNSSYGSEHLLKALLHKMKQHKVRAMADIV 111 (314)
Q Consensus 81 ~id~~~Gt~~df~~lv~~ah~~Gi~VilD~V 111 (314)
.++..-|...+++++++.||++|+.|++|.+
T Consensus 137 ~~~~~tG~~~~i~~I~~l~~~~g~~livD~~ 167 (363)
T TIGR02326 137 HCETTTGILNPIEAVAKLAHRHGKVTIVDAM 167 (363)
T ss_pred eecCCccccCcHHHHHHHHHHcCCEEEEEcc
Confidence 3456678888999999999999999999976
No 484
>cd06453 SufS_like Cysteine desulfurase (SufS)-like. This family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to cysteine desulfurase (SufS) and selenocysteine lyase. SufS catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L-selenocystine to produce L-alanine; and selenocysteine lyase catalyzes the decomposition of L-selenocysteine.
Probab=27.63 E-value=49 Score=31.03 Aligned_cols=30 Identities=13% Similarity=0.118 Sum_probs=25.2
Q ss_pred CCCCCCHHHHHHHHHHHhhCCCEEEEeeee
Q 021281 83 NSSYGSEHLLKALLHKMKQHKVRAMADIVI 112 (314)
Q Consensus 83 d~~~Gt~~df~~lv~~ah~~Gi~VilD~V~ 112 (314)
+...|...+++++++.|+++|+.|++|...
T Consensus 149 ~~~tG~~~~~~~i~~~~~~~~~~li~D~a~ 178 (373)
T cd06453 149 SNVLGTINPVKEIGEIAHEAGVPVLVDGAQ 178 (373)
T ss_pred ccccCCcCCHHHHHHHHHHcCCEEEEEhhh
Confidence 344677778999999999999999999753
No 485
>PRK11543 gutQ D-arabinose 5-phosphate isomerase; Provisional
Probab=27.59 E-value=75 Score=29.41 Aligned_cols=60 Identities=12% Similarity=0.230 Sum_probs=41.5
Q ss_pred hhHHHHcCCCEEEeCCCCCCC-CCCCCCcccCCCcCCCCCCHHHHHHHHHHHhhCCCEEEE
Q 021281 49 VPDISKSGFTSVWLPPATHSF-APEGYLPQNLYSLNSSYGSEHLLKALLHKMKQHKVRAMA 108 (314)
Q Consensus 49 ldyl~~lG~~~I~l~Pi~~~~-~~~gY~~~d~~~id~~~Gt~~df~~lv~~ah~~Gi~Vil 108 (314)
.-.|..+|..++.+.|..... ........|..-+=+.-|.-++..++++.|+++|++||.
T Consensus 61 ~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~d~~i~iS~sG~t~~~~~~~~~ak~~g~~vI~ 121 (321)
T PRK11543 61 AATLASTGTPAFFVHPAEALHGDLGMIESRDVMLFISYSGGAKELDLIIPRLEDKSIALLA 121 (321)
T ss_pred HHHHHcCCCceeecChHHHhhCCcCccCCCCEEEEEeCCCCcHHHHHHHHHHHHcCCeEEE
Confidence 456678999999887642211 112233344443446668888999999999999999998
No 486
>PLN02692 alpha-galactosidase
Probab=27.59 E-value=1.3e+02 Score=29.56 Aligned_cols=61 Identities=15% Similarity=0.150 Sum_probs=36.4
Q ss_pred hHHHHHHhhh-----HHHHcCCCEEEeCCCCCCC--CCCCCCcccCCCcCC-CCCCHHHHHHHHHHHhhCCCEEEE
Q 021281 41 WWRNLERKVP-----DISKSGFTSVWLPPATHSF--APEGYLPQNLYSLNS-SYGSEHLLKALLHKMKQHKVRAMA 108 (314)
Q Consensus 41 ~~~gi~~~ld-----yl~~lG~~~I~l~Pi~~~~--~~~gY~~~d~~~id~-~~Gt~~df~~lv~~ah~~Gi~Vil 108 (314)
+-+.+.+.++ .|+++|++.|.|=-=+... ...|. ..+|| +| +..++.|++.+|++|||.=+
T Consensus 71 ~E~~i~~~ad~~~~~gl~~~Gy~yv~iDDgW~~~~rd~~G~-----~~~d~~kF--P~G~k~ladyiH~~GLKfGI 139 (412)
T PLN02692 71 DEKMIKETADALVSTGLSKLGYTYVNIDDCWAEIARDEKGN-----LVPKKSTF--PSGIKALADYVHSKGLKLGI 139 (412)
T ss_pred CHHHHHHHHHHHHhccchhcCcEEEEEcCCcCCCCCCCCCC-----eeeChhhc--CCcHHHHHHHHHHCCCceEE
Confidence 4455555555 4578899999763322111 12232 22332 33 13599999999999999766
No 487
>PRK15481 transcriptional regulatory protein PtsJ; Provisional
Probab=27.56 E-value=1.9e+02 Score=27.90 Aligned_cols=48 Identities=21% Similarity=0.117 Sum_probs=33.9
Q ss_pred CCCEEEeCCCCCCCCCCCCCcccCCCcCCCCCCHHHHHHHHHHHhhC-CCEEEEeeeecccc
Q 021281 56 GFTSVWLPPATHSFAPEGYLPQNLYSLNSSYGSEHLLKALLHKMKQH-KVRAMADIVINHRV 116 (314)
Q Consensus 56 G~~~I~l~Pi~~~~~~~gY~~~d~~~id~~~Gt~~df~~lv~~ah~~-Gi~VilD~V~NH~~ 116 (314)
+.+.|++.|-..++...- =+.+..++|++-|+++ ++-||.|=++.+..
T Consensus 211 ~~k~i~~~p~p~NPTG~~-------------~s~~~~~~l~~la~~~~~~~ii~De~Y~~~~ 259 (431)
T PRK15481 211 GARAVILTPRAHNPTGCS-------------LSARRAAALRNLLARYPQVLVIIDDHFALLS 259 (431)
T ss_pred CCCEEEECCCCCCCCCcc-------------CCHHHHHHHHHHHHhcCCceEEecCchhhhc
Confidence 567777766444442111 1468889999999988 99999998877664
No 488
>PRK11658 UDP-4-amino-4-deoxy-L-arabinose--oxoglutarate aminotransferase; Provisional
Probab=27.46 E-value=45 Score=31.89 Aligned_cols=30 Identities=13% Similarity=0.037 Sum_probs=26.7
Q ss_pred CCCCHHHHHHHHHHHhhCCCEEEEeeeecc
Q 021281 85 SYGSEHLLKALLHKMKQHKVRAMADIVINH 114 (314)
Q Consensus 85 ~~Gt~~df~~lv~~ah~~Gi~VilD~V~NH 114 (314)
.+|...+++++.+.|+++|+.||.|-+--+
T Consensus 130 ~~G~~~d~~~i~~~a~~~gi~vi~D~a~a~ 159 (379)
T PRK11658 130 YAGAPADLDAIRAIGERYGIPVIEDAAHAV 159 (379)
T ss_pred CCCCcCCHHHHHHHHHHcCCeEEEECCCcc
Confidence 478888999999999999999999998654
No 489
>PRK07671 cystathionine beta-lyase; Provisional
Probab=27.36 E-value=58 Score=31.22 Aligned_cols=30 Identities=10% Similarity=0.015 Sum_probs=25.8
Q ss_pred CCCCCHHHHHHHHHHHhhCCCEEEEeeeec
Q 021281 84 SSYGSEHLLKALLHKMKQHKVRAMADIVIN 113 (314)
Q Consensus 84 ~~~Gt~~df~~lv~~ah~~Gi~VilD~V~N 113 (314)
...|...+++++++.||++|+.||+|-++.
T Consensus 145 NPtg~~~dl~~I~~la~~~g~~lvvD~a~~ 174 (377)
T PRK07671 145 NPLLKITDIKKISTIAKEKGLLTIVDNTFM 174 (377)
T ss_pred CCCCcccCHHHHHHHHHHcCCEEEEECCCC
Confidence 345778899999999999999999998764
No 490
>PLN02656 tyrosine transaminase
Probab=27.33 E-value=63 Score=31.11 Aligned_cols=30 Identities=27% Similarity=0.232 Sum_probs=26.5
Q ss_pred CHHHHHHHHHHHhhCCCEEEEeeeeccccC
Q 021281 88 SEHLLKALLHKMKQHKVRAMADIVINHRVG 117 (314)
Q Consensus 88 t~~df~~lv~~ah~~Gi~VilD~V~NH~~~ 117 (314)
+.++++++++.|+++|+-||.|-++.+...
T Consensus 187 s~~~~~~i~~~a~~~~~~ii~De~y~~~~~ 216 (409)
T PLN02656 187 SYQHLKKIAETAEKLKILVIADEVYGHLAF 216 (409)
T ss_pred CHHHHHHHHHHHHHcCCEEEEehhhhhccc
Confidence 358999999999999999999999887654
No 491
>cd03414 CbiX_SirB_C Sirohydrochlorin cobalt chelatase (CbiX) and sirohydrochlorin iron chelatase (SirB), C-terminal domain. SirB catalyzes the ferro-chelation of sirohydrochlorin to siroheme, the prosthetic group of sulfite and nitrite reductases. CbiX is a cobaltochelatase, responsible for the chelation of Co2+ into sirohydrochlorin, an important step in the vitamin B12 biosynthetic pathway. CbiX often contains a C-terminal histidine-rich region that may be important for metal delivery and/or storage, and may also contain an iron-sulfur center. Both CbiX and SirB are found in a wide range of bacteria.
Probab=27.30 E-value=55 Score=25.36 Aligned_cols=26 Identities=15% Similarity=0.091 Sum_probs=21.7
Q ss_pred HHHHhhhHHHHcCCCEEEeCCCCCCC
Q 021281 44 NLERKVPDISKSGFTSVWLPPATHSF 69 (314)
Q Consensus 44 gi~~~ldyl~~lG~~~I~l~Pi~~~~ 69 (314)
.+.+.|+.+.+.|++.|.+.|.|-..
T Consensus 46 ~~~~~l~~l~~~g~~~i~vvP~fL~~ 71 (117)
T cd03414 46 SLPEALERLRALGARRVVVLPYLLFT 71 (117)
T ss_pred CHHHHHHHHHHcCCCEEEEEechhcC
Confidence 46777788888999999999998665
No 492
>PRK09989 hypothetical protein; Provisional
Probab=27.28 E-value=1.1e+02 Score=27.21 Aligned_cols=61 Identities=8% Similarity=0.012 Sum_probs=40.0
Q ss_pred HHHHHHhhhHHHHcCCCEEEeCCCCCCCCCCCCCcccCCCcCCCCCCHHHHHHHHHHHhhCCCEEEEee
Q 021281 42 WRNLERKVPDISKSGFTSVWLPPATHSFAPEGYLPQNLYSLNSSYGSEHLLKALLHKMKQHKVRAMADI 110 (314)
Q Consensus 42 ~~gi~~~ldyl~~lG~~~I~l~Pi~~~~~~~gY~~~d~~~id~~~Gt~~df~~lv~~ah~~Gi~VilD~ 110 (314)
.+.+.+.++..+.+|+..|.+.|-... .+..+...+ --..+.|+++.+.|.+.|+++.+.-
T Consensus 84 ~~~l~~~i~~A~~lg~~~v~v~~g~~~---~~~~~~~~~-----~~~~~~l~~l~~~a~~~gv~l~lE~ 144 (258)
T PRK09989 84 RADIDLALEYALALNCEQVHVMAGVVP---AGEDAERYR-----AVFIDNLRYAADRFAPHGKRILVEA 144 (258)
T ss_pred HHHHHHHHHHHHHhCcCEEEECccCCC---CCCCHHHHH-----HHHHHHHHHHHHHHHhcCCEEEEEe
Confidence 455777888889999999987653211 111111000 0024679999999999999998864
No 493
>COG0320 LipA Lipoate synthase [Coenzyme metabolism]
Probab=27.21 E-value=2.3e+02 Score=26.36 Aligned_cols=81 Identities=10% Similarity=0.030 Sum_probs=56.3
Q ss_pred cccccCccccCCceeEEEEeeCCCCCCchHHHHHHhhhHHHHcCCCEEEeCCCCCCCCCCCCCcccCCCcCCCCCCHHHH
Q 021281 13 QQTDLGAVIRNGREILFQGFNWESCKHDWWRNLERKVPDISKSGFTSVWLPPATHSFAPEGYLPQNLYSLNSSYGSEHLL 92 (314)
Q Consensus 13 ~~~~~~~~~~~~~~~i~q~F~w~~~~~g~~~gi~~~ldyl~~lG~~~I~l~Pi~~~~~~~gY~~~d~~~id~~~Gt~~df 92 (314)
.+..+.|..-.++++|+-+=+ +.+.|.+.++-|.+.||+-|=|.--.... .+ ...-.+|=++++|
T Consensus 205 ~~k~~~P~i~TKSgiMlGLGE-------t~~Ev~e~m~DLr~~gvdilTiGQYlqPS-~~-------HlpV~ryv~PeeF 269 (306)
T COG0320 205 RAKELGPDIPTKSGLMVGLGE-------TDEEVIEVMDDLRSAGVDILTIGQYLQPS-RK-------HLPVQRYVTPEEF 269 (306)
T ss_pred HHHHhCCCcccccceeeecCC-------cHHHHHHHHHHHHHcCCCEEEeccccCCc-cc-------cCCceeccCHHHH
Confidence 345567777776666664433 58999999999999999999665433221 11 1122455689999
Q ss_pred HHHHHHHhhCCCEEEE
Q 021281 93 KALLHKMKQHKVRAMA 108 (314)
Q Consensus 93 ~~lv~~ah~~Gi~Vil 108 (314)
+++-+.+.+.|..-+.
T Consensus 270 ~~~~~~a~~~GF~~v~ 285 (306)
T COG0320 270 DELEEVAEEMGFLHVA 285 (306)
T ss_pred HHHHHHHHHccchhhc
Confidence 9999999999975444
No 494
>PRK08175 aminotransferase; Validated
Probab=27.21 E-value=66 Score=30.72 Aligned_cols=29 Identities=14% Similarity=0.182 Sum_probs=25.4
Q ss_pred CHHHHHHHHHHHhhCCCEEEEeeeecccc
Q 021281 88 SEHLLKALLHKMKQHKVRAMADIVINHRV 116 (314)
Q Consensus 88 t~~df~~lv~~ah~~Gi~VilD~V~NH~~ 116 (314)
+.++++++++.|+++|+.||.|-++.+..
T Consensus 182 ~~~~~~~i~~~a~~~~i~ii~De~y~~l~ 210 (395)
T PRK08175 182 ELEFFEKVVALAKRYDVLVVHDLAYADIV 210 (395)
T ss_pred CHHHHHHHHHHHHHcCcEEEEecchHhhc
Confidence 57899999999999999999998876543
No 495
>PLN02607 1-aminocyclopropane-1-carboxylate synthase
Probab=27.18 E-value=2.5e+02 Score=27.55 Aligned_cols=61 Identities=11% Similarity=0.139 Sum_probs=41.1
Q ss_pred hHHHHHHhhhHHHHcCC--CEEEeCCCCCCCCCCCCCcccCCCcCCCCCCHHHHHHHHHHHhhCCCEEEEeeeeccc
Q 021281 41 WWRNLERKVPDISKSGF--TSVWLPPATHSFAPEGYLPQNLYSLNSSYGSEHLLKALLHKMKQHKVRAMADIVINHR 115 (314)
Q Consensus 41 ~~~gi~~~ldyl~~lG~--~~I~l~Pi~~~~~~~gY~~~d~~~id~~~Gt~~df~~lv~~ah~~Gi~VilD~V~NH~ 115 (314)
+.+.+++.+...++-|. .+|.|+-+. ++ .|. .=+.++++++++-|+++++-||.|=++-..
T Consensus 183 ~~~~le~a~~~a~~~~~~vk~lll~nP~-NP--tG~-----------~~s~e~l~~l~~~~~~~~i~lI~DEiYa~~ 245 (447)
T PLN02607 183 TPQALEAAYQEAEAANIRVRGVLITNPS-NP--LGA-----------TVQRSVLEDILDFVVRKNIHLVSDEIYSGS 245 (447)
T ss_pred CHHHHHHHHHHHHHhCCCeeEEEEeCCC-CC--cCc-----------ccCHHHHHHHHHHHHHCCCEEEEecccccc
Confidence 56666666666555454 467764322 21 221 115789999999999999999999988653
No 496
>PF12905 Glyco_hydro_101: Endo-alpha-N-acetylgalactosaminidase; PDB: 3ECQ_B 2ZXQ_A.
Probab=27.10 E-value=64 Score=31.48 Aligned_cols=100 Identities=11% Similarity=0.101 Sum_probs=50.9
Q ss_pred ccccccCccccCCceeEE-EEeeCCCCCCchHHHHHHhhh--HHHHcCCCEEEeCCCCCCCCCCCCCcccCCCcCCCCCC
Q 021281 12 NQQTDLGAVIRNGREILF-QGFNWESCKHDWWRNLERKVP--DISKSGFTSVWLPPATHSFAPEGYLPQNLYSLNSSYGS 88 (314)
Q Consensus 12 ~~~~~~~~~~~~~~~~i~-q~F~w~~~~~g~~~gi~~~ld--yl~~lG~~~I~l~Pi~~~~~~~gY~~~d~~~id~~~Gt 88 (314)
.|.+..+.+..+. -|.+ -.|.--+....-|-...+.+. +|.--|+.-.-|.==+.+. .|--+=-||-.|++|.|.
T Consensus 16 im~~p~g~e~v~~-~v~~rI~~nf~sqa~~PFl~tlD~vKkv~l~TDGlgQ~vllKGY~~E-GHDS~hpdy~~~~~R~GG 93 (425)
T PF12905_consen 16 IMNNPYGSEEVPD-LVVYRIAMNFGSQAQNPFLRTLDNVKKVSLATDGLGQSVLLKGYQSE-GHDSAHPDYGNINKRAGG 93 (425)
T ss_dssp TS---TTGGGGGG-EEEEEEEE--TT--SS-HHHHHHHHHHHHHHHTS-EEEEEEET-BTT-STTSSTT-TT-B-GGGTH
T ss_pred hccCCCccccccc-ceEEEeccchhhcccChHHHHHHHHHHHhhhcCCccceEEEeecccC-CccCCCcchhhhcccccc
Confidence 3444445555552 5566 455554433333333333232 3344555555444333232 222233467789999999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeeeec
Q 021281 89 EHLLKALLHKMKQHKVRAMADIVIN 113 (314)
Q Consensus 89 ~~df~~lv~~ah~~Gi~VilD~V~N 113 (314)
.+||+.|+++.|+-|-++=+-|-.-
T Consensus 94 ~~D~~~L~~~g~~yna~~GvHVNat 118 (425)
T PF12905_consen 94 AEDFNTLLEEGRKYNAKFGVHVNAT 118 (425)
T ss_dssp HHHHHHHHHHHHTTTEEEEEEEESS
T ss_pred HHHHHHHHHHHHhhCCeEEEEEcce
Confidence 9999999999999998887765433
No 497
>PF03932 CutC: CutC family; InterPro: IPR005627 Copper transport in Escherichia coli is mediated by the products of at least six genes, cutA, cutB, cutC, cutD, cutE, and cutF. A mutation in one or more of these genes results in an increased copper sensitivity. Members of this family are between 200 and 300 amino acids in length and are found in both eukaryotes and bacteria.; GO: 0005507 copper ion binding, 0055070 copper ion homeostasis; PDB: 2BDQ_A 3IWP_I 1X8C_B 1X7I_A 1TWD_B.
Probab=27.08 E-value=2.7e+02 Score=24.42 Aligned_cols=50 Identities=10% Similarity=0.084 Sum_probs=38.5
Q ss_pred hHHHHHHhhhHHHHcCCCEEEeCCCCCCCCCCCCCcccCCCcCCCCCCHHHHHHHHHHHhhCCCEEEE
Q 021281 41 WWRNLERKVPDISKSGFTSVWLPPATHSFAPEGYLPQNLYSLNSSYGSEHLLKALLHKMKQHKVRAMA 108 (314)
Q Consensus 41 ~~~gi~~~ldyl~~lG~~~I~l~Pi~~~~~~~gY~~~d~~~id~~~Gt~~df~~lv~~ah~~Gi~Vil 108 (314)
.++.+.+.+..++++|++.+-+...-+.. .|| .+.+++|+++|+ |+.+.+
T Consensus 70 E~~~M~~dI~~~~~~GadG~VfG~L~~dg-----------~iD-----~~~~~~Li~~a~--~~~~tF 119 (201)
T PF03932_consen 70 EIEIMKEDIRMLRELGADGFVFGALTEDG-----------EID-----EEALEELIEAAG--GMPVTF 119 (201)
T ss_dssp HHHHHHHHHHHHHHTT-SEEEE--BETTS-----------SB------HHHHHHHHHHHT--TSEEEE
T ss_pred HHHHHHHHHHHHHHcCCCeeEEEeECCCC-----------CcC-----HHHHHHHHHhcC--CCeEEE
Confidence 78999999999999999999887765432 244 688999999986 888887
No 498
>PRK07582 cystathionine gamma-lyase; Validated
Probab=26.98 E-value=61 Score=30.88 Aligned_cols=27 Identities=15% Similarity=-0.120 Sum_probs=24.2
Q ss_pred CCCHHHHHHHHHHHhhCCCEEEEeeee
Q 021281 86 YGSEHLLKALLHKMKQHKVRAMADIVI 112 (314)
Q Consensus 86 ~Gt~~df~~lv~~ah~~Gi~VilD~V~ 112 (314)
-|...+++++++.||++|+.||+|-+.
T Consensus 145 tg~v~di~~I~~~a~~~g~~lvVD~t~ 171 (366)
T PRK07582 145 GLDVCDLAALAAAAHAAGALLVVDNTT 171 (366)
T ss_pred CCCccCHHHHHHHHHHcCCEEEEECCC
Confidence 466778999999999999999999975
No 499
>TIGR01579 MiaB-like-C MiaB-like tRNA modifying enzyme. This clade is a member of a subfamily (TIGR00089) and spans low GC Gram positive bacteria, alpha and epsilon proteobacteria, Campylobacter, Porphyromonas, Aquifex, Thermotoga, Chlamydia, Treponema and Fusobacterium.
Probab=26.91 E-value=1.4e+02 Score=28.90 Aligned_cols=31 Identities=13% Similarity=0.194 Sum_probs=27.0
Q ss_pred CHHHHHHHHHHHhh--CCCEEEEeeeeccccCC
Q 021281 88 SEHLLKALLHKMKQ--HKVRAMADIVINHRVGT 118 (314)
Q Consensus 88 t~~df~~lv~~ah~--~Gi~VilD~V~NH~~~~ 118 (314)
+.+++.++|+.+++ .|+.|..|+.+.+-+..
T Consensus 271 ~~~~~~~~v~~l~~~~~gi~i~~~~IvG~PgET 303 (414)
T TIGR01579 271 TRDDFLKLVNKLRSVRPDYAFGTDIIVGFPGES 303 (414)
T ss_pred CHHHHHHHHHHHHHhCCCCeeeeeEEEECCCCC
Confidence 67899999999999 89999999999875543
No 500
>cd00378 SHMT Serine-glycine hydroxymethyltransferase (SHMT). This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). SHMT carries out interconversion of serine and glycine; it catalyzes the transfer of hydroxymethyl group of N5, N10-methylene tetrahydrofolate to glycine resulting in the formation of serine and tetrahydrofolate. Both eukaryotic and prokaryotic SHMT enzymes form tight obligate homodimers; the mammalian enzyme forms a homotetramer comprising four pyridoxal phosphate-bound active sites.
Probab=26.90 E-value=51 Score=31.39 Aligned_cols=28 Identities=14% Similarity=0.133 Sum_probs=23.5
Q ss_pred CCCCCHHHHHHHHHHHhhCCCEEEEeee
Q 021281 84 SSYGSEHLLKALLHKMKQHKVRAMADIV 111 (314)
Q Consensus 84 ~~~Gt~~df~~lv~~ah~~Gi~VilD~V 111 (314)
+.+|+..+++++++.||++|+.||+|-+
T Consensus 170 ~~~~~~~~~~~I~~l~~~~~~~li~D~a 197 (402)
T cd00378 170 SAYPRPIDFKRFREIADEVGAYLLVDMA 197 (402)
T ss_pred cccCCCcCHHHHHHHHHhcCCEEEEEcc
Confidence 4455556789999999999999999987
Done!