BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 021283
(314 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2ECT|A Chain A, Solution Structure Of The Zinc Finger, C3hc4 Type (Ring
Finger) Domain Of Ring Finger Protein 126
Length = 78
Score = 67.8 bits (164), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 25/59 (42%), Positives = 40/59 (67%)
Query: 226 DKLGHDAECAICKENLLVGDKMQELPCKHTFHPPCLKPWLDEHNSCPICRHELQTDDHA 284
+ +G EC +CKE+ +G+ +++LPC H FH C+ PWL++H+SCP+CR L + A
Sbjct: 10 EHVGSGLECPVCKEDYALGESVRQLPCNHLFHDSCIVPWLEQHDSCPVCRKSLTGQNTA 68
>pdb|2L0B|A Chain A, Solution Nmr Structure Of Zinc Finger Domain Of E3
Ubiquitin-Protein Ligase Praja-1 From Homo Sapiens,
Northeast Structural Genomics Consortium (Nesg) Target
Hr4710b
Length = 91
Score = 65.9 bits (159), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 32/71 (45%), Positives = 42/71 (59%), Gaps = 1/71 (1%)
Query: 205 PPASKEVVAKLPVITLTEEILDKLGHDAECAICKENLLVGDKMQELPCKHTFHPPCLKPW 264
PPASKE + LP I +TE+ +G + C IC + GD ELPC H FH PC+ W
Sbjct: 15 PPASKESIDALPEILVTED-HGAVGQEMCCPICCSEYVKGDVATELPCHHYFHKPCVSIW 73
Query: 265 LDEHNSCPICR 275
L + +CP+CR
Sbjct: 74 LQKSGTCPVCR 84
>pdb|1IYM|A Chain A, Ring-H2 Finger Domain Of El5
Length = 55
Score = 50.1 bits (118), Expect = 2e-06, Method: Composition-based stats.
Identities = 20/44 (45%), Positives = 28/44 (63%), Gaps = 1/44 (2%)
Query: 233 ECAICKENLLVGDKMQELP-CKHTFHPPCLKPWLDEHNSCPICR 275
ECA+C L G++ + LP C H FH C+ WL H++CP+CR
Sbjct: 7 ECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGSHSTCPLCR 50
>pdb|2KIZ|A Chain A, Solution Structure Of Arkadia Ring-H2 Finger Domain
Length = 69
Score = 48.5 bits (114), Expect = 5e-06, Method: Composition-based stats.
Identities = 19/47 (40%), Positives = 28/47 (59%)
Query: 233 ECAICKENLLVGDKMQELPCKHTFHPPCLKPWLDEHNSCPICRHELQ 279
+C IC L G+ ++ LPC H FH C+ WL + CPICR +++
Sbjct: 16 KCTICLSILEEGEDVRRLPCMHLFHQVCVDQWLITNKKCPICRVDIE 62
>pdb|2EP4|A Chain A, Solution Structure Of Ring Finger From Human Ring Finger
Protein 24
Length = 74
Score = 47.8 bits (112), Expect = 8e-06, Method: Composition-based stats.
Identities = 18/41 (43%), Positives = 24/41 (58%)
Query: 234 CAICKENLLVGDKMQELPCKHTFHPPCLKPWLDEHNSCPIC 274
CA+C E+ D++ PCKH FH CL WL+ CP+C
Sbjct: 18 CAVCLEDFKPRDELGICPCKHAFHRKCLIKWLEVRKVCPLC 58
>pdb|2ECN|A Chain A, Solution Structure Of The Ring Domain Of The Human Ring
Finger Protein 141
Length = 70
Score = 46.2 bits (108), Expect = 2e-05, Method: Composition-based stats.
Identities = 20/54 (37%), Positives = 29/54 (53%), Gaps = 4/54 (7%)
Query: 225 LDKLGHDAECAICKENLLVGDKMQELPCKHTFHPPCLKPWLDEHNSCPICRHEL 278
+ +L + EC IC + G LPC H+F C+ W D H +CPICR ++
Sbjct: 9 VKQLTDEEECCICMD----GRADLILPCAHSFCQKCIDKWSDRHRNCPICRLQM 58
>pdb|1X4J|A Chain A, Solution Structure Of Ring Finger In Ring Finger Protein
38
Length = 75
Score = 42.0 bits (97), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 23/42 (54%)
Query: 234 CAICKENLLVGDKMQELPCKHTFHPPCLKPWLDEHNSCPICR 275
C +C + ++ LPC H FH C+ WL + +CPICR
Sbjct: 26 CVVCMCDFESRQLLRVLPCNHEFHAKCVDKWLKANRTCPICR 67
>pdb|4AYC|B Chain B, Rnf8 Ring Domain Structure
Length = 138
Score = 41.2 bits (95), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 34/67 (50%), Gaps = 7/67 (10%)
Query: 222 EEIL----DKLGHDAECAICKENLLVGDKMQELPCKHTFHPPCLKPWLDEHNSCPICRHE 277
EE+L D L ++ +C IC E + L C H+F C+ W+ CPICR +
Sbjct: 40 EEVLSHMNDVLENELQCIICSEYFIEA---VTLNCAHSFCSYCINEWMKRKIECPICRKD 96
Query: 278 LQTDDHA 284
+++ ++
Sbjct: 97 IKSKTYS 103
>pdb|4AYC|A Chain A, Rnf8 Ring Domain Structure
Length = 138
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 34/67 (50%), Gaps = 7/67 (10%)
Query: 222 EEIL----DKLGHDAECAICKENLLVGDKMQELPCKHTFHPPCLKPWLDEHNSCPICRHE 277
EE+L D L ++ +C IC E + L C H+F C+ W+ CPICR +
Sbjct: 40 EEVLSHMNDVLENELQCIICSEYFIEA---VTLNCAHSFCSYCINEWMKRKIECPICRKD 96
Query: 278 LQTDDHA 284
+++ ++
Sbjct: 97 IKSKTYS 103
>pdb|4EPO|C Chain C, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|G Chain G, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|H Chain H, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|K Chain K, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|L Chain L, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
Length = 149
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 35/67 (52%), Gaps = 7/67 (10%)
Query: 222 EEIL----DKLGHDAECAICKENLLVGDKMQELPCKHTFHPPCLKPWLDEHNSCPICRHE 277
EE+L D L ++ +C IC E + + L C H+F C+ W+ CPICR +
Sbjct: 51 EEVLSHMNDVLENELQCIICSEYFI---EAVTLNCAHSFCSYCINEWMKRKIECPICRKD 107
Query: 278 LQTDDHA 284
+++ ++
Sbjct: 108 IKSKTYS 114
>pdb|2ECL|A Chain A, Solution Structure Of The Ring Domain Of The Human
Ring-Box Protein 2
Length = 81
Score = 37.4 bits (85), Expect = 0.012, Method: Composition-based stats.
Identities = 10/26 (38%), Positives = 18/26 (69%)
Query: 252 CKHTFHPPCLKPWLDEHNSCPICRHE 277
C H+FH C+ W+ ++N CP+C+ +
Sbjct: 48 CNHSFHNCCMSLWVKQNNRCPLCQQD 73
>pdb|1CHC|A Chain A, Structure Of The C3hc4 Domain By 1h-Nuclear Magnetic
Resonance Spectroscopy; A New Structural Class Of Zinc-
Finger
Length = 68
Score = 35.4 bits (80), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 29/55 (52%), Gaps = 2/55 (3%)
Query: 233 ECAICKENLLVGDKMQELPCKHTFHPPCLKPWLDEHNSCPICRHELQTDDHAYES 287
C IC E+ + LPC H F C+ W+ ++ +CP+C+ +++ H ES
Sbjct: 7 RCPICLED--PSNYSMALPCLHAFCYVCITRWIRQNPTCPLCKVPVESVVHTIES 59
>pdb|2X42|A Chain A, Structure Of Beta-Glucosidase 3b From Thermotoga
Neapolitana In Complex With Alpha-D-Glucose
Length = 721
Score = 34.7 bits (78), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 21/80 (26%), Positives = 36/80 (45%)
Query: 178 NLFQELVNNLDDVIPEILETDSATPRVPPASKEVVAKLPVITLTEEILDKLGHDAECAIC 237
N +EL +D I ++ ET+ PR + KLP L+E+ + KL + A+
Sbjct: 391 NFDEELAKTYEDYIKKMRETEEYKPRRDSWGTIIKPKLPENFLSEKEIHKLAKKNDVAVI 450
Query: 238 KENLLVGDKMQELPCKHTFH 257
+ + G+ P K F+
Sbjct: 451 VISRISGEGYDRKPVKGDFY 470
>pdb|2X40|A Chain A, Structure Of Beta-Glucosidase 3b From Thermotoga
Neapolitana In Complex With Glycerol
pdb|2X41|A Chain A, Structure Of Beta-Glucosidase 3b From Thermotoga
Neapolitana In Complex With Glucose
Length = 721
Score = 34.7 bits (78), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 21/80 (26%), Positives = 36/80 (45%)
Query: 178 NLFQELVNNLDDVIPEILETDSATPRVPPASKEVVAKLPVITLTEEILDKLGHDAECAIC 237
N +EL +D I ++ ET+ PR + KLP L+E+ + KL + A+
Sbjct: 391 NFDEELAKTYEDYIKKMRETEEYKPRRDSWGTIIKPKLPENFLSEKEIHKLAKKNDVAVI 450
Query: 238 KENLLVGDKMQELPCKHTFH 257
+ + G+ P K F+
Sbjct: 451 VISRISGEGYDRKPVKGDFY 470
>pdb|2D8T|A Chain A, Solution Structure Of The Ring Domain Of The Human Ring
Finger Protein 146
Length = 71
Score = 33.9 bits (76), Expect = 0.11, Method: Composition-based stats.
Identities = 20/51 (39%), Positives = 26/51 (50%), Gaps = 7/51 (13%)
Query: 233 ECAICKENLLVGDKMQELPCKHTFHPPCLK--PWLDEHNSCPICRHELQTD 281
ECAIC + + LPCKH F C+K WL + C +CR E+ D
Sbjct: 17 ECAICLQTCV---HPVSLPCKHVFCYLCVKGASWLGKR--CALCRQEIPED 62
>pdb|2ECM|A Chain A, Solution Structure Of The Ring Domain Of The Ring Finger
And Chy Zinc Finger Domain-Containing Protein 1 From Mus
Musculus
Length = 55
Score = 33.1 bits (74), Expect = 0.20, Method: Composition-based stats.
Identities = 15/42 (35%), Positives = 20/42 (47%), Gaps = 1/42 (2%)
Query: 234 CAICKENLLVGDKMQE-LPCKHTFHPPCLKPWLDEHNSCPIC 274
C IC E++ + LPC H H C + L E CP+C
Sbjct: 8 CPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKEGYRCPLC 49
>pdb|2XEU|A Chain A, Ring Domain
Length = 64
Score = 32.3 bits (72), Expect = 0.39, Method: Composition-based stats.
Identities = 17/54 (31%), Positives = 23/54 (42%), Gaps = 4/54 (7%)
Query: 229 GHDAECAIC----KENLLVGDKMQELPCKHTFHPPCLKPWLDEHNSCPICRHEL 278
G C IC E + G + C H F CL+ L N+CP CR ++
Sbjct: 1 GAMVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKI 54
>pdb|3NG2|A Chain A, Crystal Structure Of The Rnf4 Ring Domain Dimer
pdb|3NG2|B Chain B, Crystal Structure Of The Rnf4 Ring Domain Dimer
Length = 71
Score = 32.0 bits (71), Expect = 0.48, Method: Composition-based stats.
Identities = 16/49 (32%), Positives = 22/49 (44%), Gaps = 4/49 (8%)
Query: 234 CAIC----KENLLVGDKMQELPCKHTFHPPCLKPWLDEHNSCPICRHEL 278
C IC E + G + C H F CL+ L N+CP CR ++
Sbjct: 13 CPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKI 61
>pdb|3UNG|C Chain C, Structure Of The Cmr2 Subunit Of The Crispr Rna Silencing
Complex
pdb|3UR3|C Chain C, Structure Of The Cmr2 Subunit Of The Crispr Rna Silencing
Complex
Length = 693
Score = 31.6 bits (70), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 21/79 (26%), Positives = 31/79 (39%), Gaps = 22/79 (27%)
Query: 211 VVAKLPVITLTEEILDKLGHDA---------------ECAICKENLLVGDKMQELPCKHT 255
V+ ++ + L +ILD LG +C +C ENL + M +
Sbjct: 232 VLERIAIYPLLVKILDSLGERKVTEERFEKSEQLKGWKCHVCGENLAIFGDMYD------ 285
Query: 256 FHPPCLKPWLDEHNSCPIC 274
H WLDE CP+C
Sbjct: 286 -HDNLKSLWLDEEPLCPMC 303
>pdb|2EA6|A Chain A, Solution Structure Of The Ring Domain Of The Human Ring
Finger Protein 4
Length = 69
Score = 31.6 bits (70), Expect = 0.63, Method: Composition-based stats.
Identities = 16/49 (32%), Positives = 22/49 (44%), Gaps = 4/49 (8%)
Query: 234 CAIC----KENLLVGDKMQELPCKHTFHPPCLKPWLDEHNSCPICRHEL 278
C IC E + G + C H F CL+ L N+CP CR ++
Sbjct: 18 CPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKI 66
>pdb|4DOZ|A Chain A, Crystal Structure Of Pyrococcus Furiosus Cmr2 (Cas10)
Length = 686
Score = 31.6 bits (70), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 21/79 (26%), Positives = 31/79 (39%), Gaps = 22/79 (27%)
Query: 211 VVAKLPVITLTEEILDKLGHDA---------------ECAICKENLLVGDKMQELPCKHT 255
V+ ++ + L +ILD LG +C +C ENL + M +
Sbjct: 217 VLERIAIYPLLVKILDSLGERKVTEERFEKSEQLKGWKCHVCGENLAIFGDMYD------ 270
Query: 256 FHPPCLKPWLDEHNSCPIC 274
H WLDE CP+C
Sbjct: 271 -HDNLKSLWLDEEPLCPMC 288
>pdb|1VGY|A Chain A, Crystal Structure Of Succinyl Diaminopimelate
Desuccinylase
pdb|1VGY|B Chain B, Crystal Structure Of Succinyl Diaminopimelate
Desuccinylase
Length = 393
Score = 31.2 bits (69), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 31/76 (40%), Gaps = 12/76 (15%)
Query: 78 FELAESLVSDPSQKQHLKACIAKAKEHLHEIDNAPEASEATYNTTNRGYL---------- 127
ELA+ L+S PS + C E LH+I A E E + T +L
Sbjct: 9 LELAKELISRPSVTPDDRDCQKLXAERLHKIGFAAE--EXHFGNTKNIWLRRGTKAPVVC 66
Query: 128 FEGHLTVDPEPPQPQW 143
F GH V P P +W
Sbjct: 67 FAGHTDVVPTGPVEKW 82
>pdb|3L11|A Chain A, Crystal Structure Of The Ring Domain Of Rnf168
Length = 115
Score = 31.2 bits (69), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 27/51 (52%), Gaps = 4/51 (7%)
Query: 231 DAECAICKENLLVGDKMQELPCKHTFHPPCLKPWLDEHN-SCPICRHELQT 280
+ +C IC E L+ + LPC HT PC + +++ + CP CR + +
Sbjct: 15 ECQCGICMEILV---EPVTLPCNHTLCKPCFQSTVEKASLCCPFCRRRVSS 62
>pdb|2JRJ|A Chain A, Solution Structure Of The Human Pirh2 Ring-H2 Domain.
Northeast Structural Genomics Consortium Target Ht2b
Length = 52
Score = 30.8 bits (68), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 21/44 (47%), Gaps = 1/44 (2%)
Query: 234 CAICKENLLVGDKMQE-LPCKHTFHPPCLKPWLDEHNSCPICRH 276
C IC E++ + LPC H H C + L E CP+C H
Sbjct: 8 CPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKEGYRCPLCMH 51
>pdb|4A0C|D Chain D, Structure Of The Cand1-Cul4b-Rbx1 Complex
pdb|4A0C|F Chain F, Structure Of The Cand1-Cul4b-Rbx1 Complex
pdb|4A0L|F Chain F, Structure Of Ddb1-Ddb2-Cul4b-Rbx1 Bound To A 12 Bp Abasic
Site Containing Dna-Duplex
pdb|4A0L|I Chain I, Structure Of Ddb1-Ddb2-Cul4b-Rbx1 Bound To A 12 Bp Abasic
Site Containing Dna-Duplex
Length = 98
Score = 29.6 bits (65), Expect = 2.2, Method: Composition-based stats.
Identities = 10/34 (29%), Positives = 15/34 (44%)
Query: 252 CKHTFHPPCLKPWLDEHNSCPICRHELQTDDHAY 285
C H FH C+ WL CP+ E + + +
Sbjct: 65 CNHAFHFHCISRWLKTRQVCPLDNREWEFQKYGH 98
>pdb|1LDJ|B Chain B, Structure Of The Cul1-rbx1-skp1-f Boxskp2 Scf Ubiquitin
Ligase Complex
pdb|1LDK|C Chain C, Structure Of The Cul1-Rbx1-Skp1-F Boxskp2 Scf Ubiquitin
Ligase Complex
Length = 90
Score = 29.3 bits (64), Expect = 2.6, Method: Composition-based stats.
Identities = 10/34 (29%), Positives = 15/34 (44%)
Query: 252 CKHTFHPPCLKPWLDEHNSCPICRHELQTDDHAY 285
C H FH C+ WL CP+ E + + +
Sbjct: 57 CNHAFHFHCISRWLKTRQVCPLDNREWEFQKYGH 90
>pdb|4AP4|A Chain A, Rnf4 - Ubch5a - Ubiquitin Heterotrimeric Complex
Length = 133
Score = 29.3 bits (64), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 11/27 (40%), Positives = 15/27 (55%)
Query: 252 CKHTFHPPCLKPWLDEHNSCPICRHEL 278
C H F CL+ L N+CP CR ++
Sbjct: 32 CGHVFCSQCLRDSLKNANTCPTCRKKI 58
Score = 29.3 bits (64), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 11/27 (40%), Positives = 15/27 (55%)
Query: 252 CKHTFHPPCLKPWLDEHNSCPICRHEL 278
C H F CL+ L N+CP CR ++
Sbjct: 97 CGHVFCSQCLRDSLKNANTCPTCRKKI 123
>pdb|2LGV|A Chain A, Rbx1
Length = 100
Score = 29.3 bits (64), Expect = 3.0, Method: Composition-based stats.
Identities = 10/34 (29%), Positives = 15/34 (44%)
Query: 252 CKHTFHPPCLKPWLDEHNSCPICRHELQTDDHAY 285
C H FH C+ WL CP+ E + + +
Sbjct: 67 CNHAFHFHCISRWLKTRQVCPLDNREWEFQKYGH 100
>pdb|2DJB|A Chain A, Solution Structure Of The Ring Domain Of The Human
Polycomb Group Ring Finger Protein 6
Length = 72
Score = 28.9 bits (63), Expect = 3.9, Method: Composition-based stats.
Identities = 15/41 (36%), Positives = 19/41 (46%), Gaps = 2/41 (4%)
Query: 234 CAICKENLLVGDKMQELPCKHTFHPPCLKPWLDEHNSCPIC 274
C+ICK L+ + E C HTF C+ N CP C
Sbjct: 18 CSICKGYLIDATTITE--CLHTFCKSCIVRHFYYSNRCPKC 56
>pdb|3S4W|B Chain B, Structure Of The Fanci-Fancd2 Complex
Length = 1323
Score = 28.9 bits (63), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 25/54 (46%), Gaps = 2/54 (3%)
Query: 38 RFPAASPTLRNQFYSVVCRVATILKTRYTAPGFWLAGLRLFEL-AESLVS-DPS 89
R P L+ +VCRV +L FWL L+ +L E ++S DPS
Sbjct: 1258 RLTKHVPLLKKSLELLVCRVKAMLVLNNCREAFWLGTLKNRDLQGEEIISQDPS 1311
>pdb|2H0D|A Chain A, Structure Of A Bmi-1-Ring1b Polycomb Group Ubiquitin
Ligase Complex
Length = 97
Score = 28.9 bits (63), Expect = 4.3, Method: Composition-based stats.
Identities = 12/41 (29%), Positives = 19/41 (46%), Gaps = 2/41 (4%)
Query: 234 CAICKENLLVGDKMQELPCKHTFHPPCLKPWLDEHNSCPIC 274
C +C + D + C H+F C+ +L+ CPIC
Sbjct: 14 CVLCGGYFI--DATTIIECLHSFCKTCIVRYLETSKYCPIC 52
>pdb|2YHN|A Chain A, The Idol-Ube2d Complex Mediates Sterol-Dependent
Degradation Of The Ldl Receptor
pdb|2YHN|B Chain B, The Idol-Ube2d Complex Mediates Sterol-Dependent
Degradation Of The Ldl Receptor
pdb|2YHO|A Chain A, The Idol-Ube2d Complex Mediates Sterol-Dependent
Degradation Of The Ldl Receptor
pdb|2YHO|C Chain C, The Idol-Ube2d Complex Mediates Sterol-Dependent
Degradation Of The Ldl Receptor
pdb|2YHO|E Chain E, The Idol-Ube2d Complex Mediates Sterol-Dependent
Degradation Of The Ldl Receptor
pdb|2YHO|G Chain G, The Idol-Ube2d Complex Mediates Sterol-Dependent
Degradation Of The Ldl Receptor
Length = 79
Score = 28.5 bits (62), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 27/64 (42%), Gaps = 6/64 (9%)
Query: 222 EEILDKLGHDAECAICKENLLVGDKMQELPCKHTFHPPCLKPWLDEHNSCPICRHELQTD 281
+E L KL C +C E + PC HT C + + SCP+CR ++
Sbjct: 9 QEKLRKLKEAMLCMVCCEEEINSTF---CPCGHTV---CCESCAAQLQSCPVCRSRVEHV 62
Query: 282 DHAY 285
H Y
Sbjct: 63 QHVY 66
>pdb|4A0K|B Chain B, Structure Of Ddb1-Ddb2-Cul4a-Rbx1 Bound To A 12 Bp Abasic
Site Containing Dna-Duplex
Length = 117
Score = 28.5 bits (62), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 10/34 (29%), Positives = 15/34 (44%)
Query: 252 CKHTFHPPCLKPWLDEHNSCPICRHELQTDDHAY 285
C H FH C+ WL CP+ E + + +
Sbjct: 84 CNHAFHFHCISRWLKTRQVCPLDNREWEFQKYGH 117
>pdb|1U6G|B Chain B, Crystal Structure Of The Cand1-Cul1-Roc1 Complex
pdb|2HYE|D Chain D, Crystal Structure Of The Ddb1-cul4a-rbx1-sv5v Complex
Length = 108
Score = 27.7 bits (60), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 10/34 (29%), Positives = 15/34 (44%)
Query: 252 CKHTFHPPCLKPWLDEHNSCPICRHELQTDDHAY 285
C H FH C+ WL CP+ E + + +
Sbjct: 75 CNHAFHFHCISRWLKTRQVCPLDNREWEFQKYGH 108
>pdb|2ECV|A Chain A, Solution Structure Of The Zinc Finger, C3hc4 Type (Ring
Finger) Domain Of Tripartite Motif-Containing Protein 5
Length = 85
Score = 27.7 bits (60), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 31/65 (47%), Gaps = 9/65 (13%)
Query: 224 ILDKLGHDAECAICKENLLVGDKMQELPCKHTFHPPCL-----KPWLDE-HNSCPICRHE 277
IL + + C IC E L + L C H+F CL K LD+ +SCP+CR
Sbjct: 12 ILVNVKEEVTCPICLELL---TQPLSLDCGHSFCQACLTANHKKSMLDKGESSCPVCRIS 68
Query: 278 LQTDD 282
Q ++
Sbjct: 69 YQPEN 73
>pdb|3RPG|B Chain B, Bmi1RING1B-Ubch5c Complex Structure
Length = 117
Score = 27.7 bits (60), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 12/41 (29%), Positives = 19/41 (46%), Gaps = 2/41 (4%)
Query: 234 CAICKENLLVGDKMQELPCKHTFHPPCLKPWLDEHNSCPIC 274
C +C + D + C H+F C+ +L+ CPIC
Sbjct: 18 CVLCGGYFI--DATTIIECLHSFCKTCIVRYLETSKYCPIC 56
>pdb|3DPL|R Chain R, Structural Insights Into Nedd8 Activation Of Cullin-Ring
Ligases: Conformational Control Of Conjugation.
pdb|3RTR|B Chain B, A Ring E3-Substrate Complex Poised For Ubiquitin-Like
Protein Transfer: Structural Insights Into Cullin-Ring
Ligases
pdb|3RTR|D Chain D, A Ring E3-Substrate Complex Poised For Ubiquitin-Like
Protein Transfer: Structural Insights Into Cullin-Ring
Ligases
pdb|3RTR|F Chain F, A Ring E3-Substrate Complex Poised For Ubiquitin-Like
Protein Transfer: Structural Insights Into Cullin-Ring
Ligases
pdb|3RTR|H Chain H, A Ring E3-Substrate Complex Poised For Ubiquitin-Like
Protein Transfer: Structural Insights Into Cullin-Ring
Ligases
pdb|4F52|B Chain B, Structure Of A Glomulin-Rbx1-Cul1 Complex
pdb|4F52|D Chain D, Structure Of A Glomulin-Rbx1-Cul1 Complex
Length = 106
Score = 27.7 bits (60), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 10/34 (29%), Positives = 15/34 (44%)
Query: 252 CKHTFHPPCLKPWLDEHNSCPICRHELQTDDHAY 285
C H FH C+ WL CP+ E + + +
Sbjct: 73 CNHAFHFHCISRWLKTRQVCPLDNREWEFQKYGH 106
>pdb|2CKL|A Chain A, Ring1b-Bmi1 E3 Catalytic Domain Structure
Length = 108
Score = 27.7 bits (60), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 12/41 (29%), Positives = 19/41 (46%), Gaps = 2/41 (4%)
Query: 234 CAICKENLLVGDKMQELPCKHTFHPPCLKPWLDEHNSCPIC 274
C +C + D + C H+F C+ +L+ CPIC
Sbjct: 18 CVLCGGYFI--DATTIIECLHSFCKTCIVRYLETSKYCPIC 56
>pdb|3DQV|R Chain R, Structural Insights Into Nedd8 Activation Of Cullin-Ring
Ligases: Conformational Control Of Conjugation
pdb|3DQV|Y Chain Y, Structural Insights Into Nedd8 Activation Of Cullin-Ring
Ligases: Conformational Control Of Conjugation
Length = 106
Score = 27.7 bits (60), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 10/34 (29%), Positives = 15/34 (44%)
Query: 252 CKHTFHPPCLKPWLDEHNSCPICRHELQTDDHAY 285
C H FH C+ WL CP+ E + + +
Sbjct: 73 CNHAFHFHCISRWLKTRQVCPLDNREWEFQKYGH 106
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.131 0.394
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,204,104
Number of Sequences: 62578
Number of extensions: 302771
Number of successful extensions: 807
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 30
Number of HSP's successfully gapped in prelim test: 20
Number of HSP's that attempted gapping in prelim test: 773
Number of HSP's gapped (non-prelim): 51
length of query: 314
length of database: 14,973,337
effective HSP length: 99
effective length of query: 215
effective length of database: 8,778,115
effective search space: 1887294725
effective search space used: 1887294725
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 51 (24.3 bits)