Query 021283
Match_columns 314
No_of_seqs 207 out of 1647
Neff 6.2
Searched_HMMs 46136
Date Fri Mar 29 09:02:14 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021283.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/021283hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4628 Predicted E3 ubiquitin 99.5 3.3E-15 7.1E-20 143.6 3.8 77 206-284 206-283 (348)
2 PF13639 zf-RING_2: Ring finge 99.5 9.5E-15 2.1E-19 100.6 1.9 43 233-275 2-44 (44)
3 PHA02929 N1R/p28-like protein; 99.3 1.4E-12 3.1E-17 120.3 6.5 74 206-279 149-227 (238)
4 COG5243 HRD1 HRD ubiquitin lig 99.2 7.9E-12 1.7E-16 119.9 4.9 72 207-282 267-348 (491)
5 PF12678 zf-rbx1: RING-H2 zinc 99.2 9.4E-12 2E-16 95.1 3.2 45 231-275 19-73 (73)
6 COG5540 RING-finger-containing 99.2 1.6E-11 3.5E-16 115.2 4.3 52 229-280 321-373 (374)
7 PLN03208 E3 ubiquitin-protein 99.0 2.3E-10 4.9E-15 102.2 3.5 50 229-281 16-81 (193)
8 PF13920 zf-C3HC4_3: Zinc fing 99.0 2.5E-10 5.4E-15 80.6 2.9 46 231-279 2-48 (50)
9 cd00162 RING RING-finger (Real 98.9 6.7E-10 1.4E-14 74.5 3.5 44 233-278 1-45 (45)
10 PF13923 zf-C3HC4_2: Zinc fing 98.9 7.5E-10 1.6E-14 74.3 2.4 39 234-274 1-39 (39)
11 smart00504 Ubox Modified RING 98.9 3.4E-09 7.3E-14 77.5 4.9 50 232-284 2-51 (63)
12 KOG0317 Predicted E3 ubiquitin 98.8 1.2E-09 2.6E-14 102.2 2.5 51 230-283 238-288 (293)
13 KOG0320 Predicted E3 ubiquitin 98.8 1.6E-09 3.5E-14 95.0 3.0 51 230-281 130-180 (187)
14 PF15227 zf-C3HC4_4: zinc fing 98.8 2.2E-09 4.8E-14 73.5 2.8 38 234-274 1-42 (42)
15 PHA02926 zinc finger-like prot 98.8 2E-09 4.3E-14 97.7 3.0 55 225-279 164-230 (242)
16 KOG0823 Predicted E3 ubiquitin 98.8 2.4E-09 5.3E-14 97.5 3.3 50 228-280 44-96 (230)
17 PF12861 zf-Apc11: Anaphase-pr 98.8 3.3E-09 7.1E-14 83.0 3.4 51 230-280 20-83 (85)
18 KOG0802 E3 ubiquitin ligase [P 98.8 2E-09 4.3E-14 110.5 2.0 49 230-278 290-340 (543)
19 PF14634 zf-RING_5: zinc-RING 98.7 7.3E-09 1.6E-13 71.3 2.9 44 233-276 1-44 (44)
20 TIGR00599 rad18 DNA repair pro 98.7 8.4E-09 1.8E-13 101.7 3.3 51 228-281 23-73 (397)
21 smart00184 RING Ring finger. E 98.7 1.6E-08 3.5E-13 65.3 3.2 38 234-274 1-39 (39)
22 PF00097 zf-C3HC4: Zinc finger 98.6 1.6E-08 3.5E-13 68.1 2.4 39 234-274 1-41 (41)
23 KOG2164 Predicted E3 ubiquitin 98.5 2.6E-08 5.7E-13 99.4 2.0 63 231-296 186-253 (513)
24 KOG0287 Postreplication repair 98.5 5.1E-08 1.1E-12 93.1 1.7 54 228-284 20-73 (442)
25 PF04564 U-box: U-box domain; 98.4 1.7E-07 3.6E-12 71.5 3.6 54 231-287 4-58 (73)
26 KOG1734 Predicted RING-contain 98.4 3.4E-08 7.4E-13 91.7 -0.4 61 230-290 223-292 (328)
27 COG5432 RAD18 RING-finger-cont 98.4 1.1E-07 2.4E-12 89.3 2.1 50 227-279 21-70 (391)
28 KOG1493 Anaphase-promoting com 98.4 6.2E-08 1.4E-12 73.9 -0.5 51 230-280 19-82 (84)
29 COG5574 PEX10 RING-finger-cont 98.3 1.8E-07 3.8E-12 86.8 2.1 49 231-282 215-265 (271)
30 TIGR00570 cdk7 CDK-activating 98.3 5E-07 1.1E-11 86.2 5.1 52 231-282 3-57 (309)
31 COG5194 APC11 Component of SCF 98.3 2.9E-07 6.3E-12 70.9 2.7 31 251-281 53-83 (88)
32 PF13445 zf-RING_UBOX: RING-ty 98.3 3.1E-07 6.8E-12 63.2 2.3 38 234-272 1-43 (43)
33 KOG0828 Predicted E3 ubiquitin 98.3 2E-07 4.3E-12 92.7 1.6 50 231-280 571-635 (636)
34 KOG2177 Predicted E3 ubiquitin 98.2 5.5E-07 1.2E-11 81.6 2.0 46 228-276 10-55 (386)
35 KOG2930 SCF ubiquitin ligase, 98.1 7.4E-07 1.6E-11 71.8 1.3 49 230-278 45-107 (114)
36 smart00744 RINGv The RING-vari 98.1 1.5E-06 3.3E-11 61.4 2.6 42 233-275 1-49 (49)
37 KOG0804 Cytoplasmic Zn-finger 98.1 1.4E-06 3.1E-11 86.0 2.0 48 230-279 174-222 (493)
38 COG5219 Uncharacterized conser 98.1 1.2E-06 2.6E-11 92.6 1.3 53 228-280 1466-1524(1525)
39 KOG0824 Predicted E3 ubiquitin 98.0 2.5E-06 5.4E-11 80.6 2.1 59 231-292 7-66 (324)
40 PF11793 FANCL_C: FANCL C-term 98.0 1.4E-06 3E-11 66.1 0.2 49 231-279 2-66 (70)
41 KOG4265 Predicted E3 ubiquitin 97.9 4.8E-06 1E-10 80.3 3.0 46 231-279 290-336 (349)
42 KOG0827 Predicted E3 ubiquitin 97.9 5.3E-06 1.1E-10 80.7 1.7 48 231-278 4-55 (465)
43 KOG4172 Predicted E3 ubiquitin 97.8 5E-06 1.1E-10 59.7 -0.1 46 231-279 7-54 (62)
44 PF14835 zf-RING_6: zf-RING of 97.8 5E-06 1.1E-10 61.8 -0.1 50 231-284 7-56 (65)
45 KOG0311 Predicted E3 ubiquitin 97.8 3.5E-06 7.7E-11 81.1 -1.4 50 228-280 40-91 (381)
46 KOG1039 Predicted E3 ubiquitin 97.7 7.4E-06 1.6E-10 79.6 0.4 50 230-279 160-221 (344)
47 KOG4445 Uncharacterized conser 97.7 1.3E-05 2.9E-10 75.8 2.0 54 229-282 113-189 (368)
48 KOG1645 RING-finger-containing 97.7 3.1E-05 6.8E-10 75.9 4.1 52 231-282 4-59 (463)
49 KOG0978 E3 ubiquitin ligase in 97.6 1.4E-05 3.1E-10 83.4 0.6 54 227-283 639-693 (698)
50 KOG0825 PHD Zn-finger protein 97.6 1.4E-05 3.1E-10 83.3 -0.1 49 231-279 123-171 (1134)
51 KOG4159 Predicted E3 ubiquitin 97.4 7.1E-05 1.5E-09 74.2 2.2 48 230-280 83-130 (398)
52 KOG1785 Tyrosine kinase negati 97.3 8.9E-05 1.9E-09 72.6 1.2 46 232-280 370-417 (563)
53 KOG0297 TNF receptor-associate 97.1 0.00023 5.1E-09 70.6 2.5 54 229-284 19-72 (391)
54 PF11789 zf-Nse: Zinc-finger o 97.1 0.00025 5.5E-09 51.7 1.5 41 231-273 11-53 (57)
55 COG5222 Uncharacterized conser 96.8 0.0011 2.3E-08 63.1 3.9 65 232-299 275-344 (427)
56 KOG2879 Predicted E3 ubiquitin 96.7 0.0012 2.5E-08 62.1 3.1 48 230-279 238-287 (298)
57 KOG4692 Predicted E3 ubiquitin 96.6 0.00097 2.1E-08 64.6 2.1 49 229-280 420-468 (489)
58 KOG1428 Inhibitor of type V ad 96.6 0.0013 2.8E-08 72.8 3.0 51 229-279 3484-3544(3738)
59 KOG1941 Acetylcholine receptor 96.6 0.00067 1.5E-08 66.5 0.7 45 231-275 365-412 (518)
60 KOG2660 Locus-specific chromos 96.6 0.00051 1.1E-08 65.9 -0.1 50 228-279 12-61 (331)
61 PF05883 Baculo_RING: Baculovi 96.6 0.00078 1.7E-08 57.2 0.9 36 231-266 26-67 (134)
62 KOG0801 Predicted E3 ubiquitin 96.5 0.00075 1.6E-08 58.9 0.4 43 214-258 162-204 (205)
63 COG5152 Uncharacterized conser 96.4 0.001 2.2E-08 59.9 0.6 44 231-277 196-239 (259)
64 KOG1002 Nucleotide excision re 96.3 0.0024 5.2E-08 64.8 2.6 53 230-285 535-592 (791)
65 KOG1571 Predicted E3 ubiquitin 96.2 0.0031 6.8E-08 61.2 2.9 46 228-279 302-347 (355)
66 PF12906 RINGv: RING-variant d 96.1 0.0035 7.6E-08 43.8 2.0 40 234-274 1-47 (47)
67 KOG3970 Predicted E3 ubiquitin 96.1 0.011 2.3E-07 54.4 5.5 62 231-293 50-119 (299)
68 PF14570 zf-RING_4: RING/Ubox 96.1 0.0041 8.8E-08 43.8 2.1 44 234-278 1-47 (48)
69 PF10367 Vps39_2: Vacuolar sor 96.1 0.0021 4.6E-08 51.2 0.8 33 229-262 76-108 (109)
70 PF14447 Prok-RING_4: Prokaryo 96.0 0.0037 8.1E-08 45.1 1.6 48 231-283 7-54 (55)
71 KOG1813 Predicted E3 ubiquitin 96.0 0.0022 4.9E-08 60.8 0.6 44 232-278 242-285 (313)
72 KOG1814 Predicted E3 ubiquitin 96.0 0.0038 8.3E-08 61.6 2.1 47 230-276 183-237 (445)
73 COG5175 MOT2 Transcriptional r 95.8 0.0073 1.6E-07 58.4 3.3 54 229-282 12-67 (480)
74 PHA02862 5L protein; Provision 95.8 0.0054 1.2E-07 52.7 2.0 45 231-279 2-53 (156)
75 KOG3039 Uncharacterized conser 95.7 0.0085 1.8E-07 55.7 3.3 54 230-283 220-274 (303)
76 KOG0826 Predicted E3 ubiquitin 95.7 0.017 3.6E-07 55.7 5.3 48 229-278 298-345 (357)
77 KOG1952 Transcription factor N 95.6 0.0052 1.1E-07 65.3 1.7 50 229-278 189-246 (950)
78 KOG4739 Uncharacterized protei 95.4 0.005 1.1E-07 56.9 0.6 46 233-281 5-50 (233)
79 KOG4275 Predicted E3 ubiquitin 95.4 0.0032 6.9E-08 59.7 -0.7 42 231-279 300-342 (350)
80 KOG4185 Predicted E3 ubiquitin 95.4 0.013 2.9E-07 55.4 3.4 48 231-278 3-54 (296)
81 PHA03096 p28-like protein; Pro 95.3 0.0077 1.7E-07 57.4 1.5 47 232-278 179-236 (284)
82 COG5236 Uncharacterized conser 95.2 0.01 2.2E-07 57.7 2.0 56 229-287 59-120 (493)
83 PHA02825 LAP/PHD finger-like p 94.7 0.025 5.3E-07 49.4 2.9 47 230-280 7-60 (162)
84 KOG2034 Vacuolar sorting prote 94.2 0.027 5.8E-07 60.4 2.4 38 228-266 814-851 (911)
85 KOG2817 Predicted E3 ubiquitin 94.2 0.038 8.3E-07 54.5 3.1 50 228-277 331-383 (394)
86 KOG2114 Vacuolar assembly/sort 94.0 0.029 6.2E-07 59.9 2.1 44 231-279 840-883 (933)
87 KOG3268 Predicted E3 ubiquitin 94.0 0.029 6.2E-07 50.0 1.7 50 231-280 165-229 (234)
88 KOG1940 Zn-finger protein [Gen 93.9 0.031 6.6E-07 53.1 1.9 61 231-293 158-219 (276)
89 KOG1001 Helicase-like transcri 93.9 0.022 4.7E-07 60.4 1.0 44 232-279 455-500 (674)
90 PF04641 Rtf2: Rtf2 RING-finge 93.8 0.059 1.3E-06 50.6 3.7 52 229-281 111-163 (260)
91 KOG0827 Predicted E3 ubiquitin 93.7 0.0052 1.1E-07 60.3 -3.6 50 231-280 196-246 (465)
92 PF07800 DUF1644: Protein of u 93.6 0.066 1.4E-06 46.8 3.2 33 231-266 2-47 (162)
93 PF08746 zf-RING-like: RING-li 93.5 0.035 7.6E-07 38.1 1.1 41 234-274 1-43 (43)
94 KOG1100 Predicted E3 ubiquitin 91.9 0.23 5E-06 45.3 4.5 41 234-281 161-202 (207)
95 KOG0298 DEAD box-containing he 91.9 0.066 1.4E-06 59.5 1.2 58 229-288 1151-1208(1394)
96 PF14446 Prok-RING_1: Prokaryo 91.6 0.17 3.6E-06 36.6 2.6 33 231-263 5-38 (54)
97 KOG3002 Zn finger protein [Gen 91.2 0.15 3.3E-06 49.1 2.6 43 230-279 47-91 (299)
98 KOG3039 Uncharacterized conser 90.4 0.082 1.8E-06 49.3 0.1 72 231-311 43-114 (303)
99 KOG0309 Conserved WD40 repeat- 90.0 0.18 3.9E-06 53.5 2.1 41 232-273 1029-1069(1081)
100 PF10272 Tmpp129: Putative tra 89.9 0.16 3.5E-06 50.0 1.7 31 252-282 311-354 (358)
101 KOG2932 E3 ubiquitin ligase in 89.5 0.14 3.1E-06 49.2 0.9 44 231-278 90-133 (389)
102 KOG3800 Predicted E3 ubiquitin 89.0 0.49 1.1E-05 45.2 4.0 49 233-281 2-53 (300)
103 PF03854 zf-P11: P-11 zinc fin 88.2 0.18 3.8E-06 35.5 0.4 33 249-281 15-48 (50)
104 KOG3899 Uncharacterized conser 88.2 0.2 4.3E-06 47.9 0.8 34 252-285 325-371 (381)
105 KOG4362 Transcriptional regula 87.6 0.14 3E-06 54.0 -0.6 47 230-279 20-69 (684)
106 PF05290 Baculo_IE-1: Baculovi 87.5 0.4 8.6E-06 40.8 2.2 51 230-282 79-135 (140)
107 KOG1609 Protein involved in mR 87.4 0.2 4.3E-06 47.3 0.4 51 231-281 78-136 (323)
108 KOG3053 Uncharacterized conser 86.6 0.26 5.7E-06 46.2 0.7 49 230-278 19-81 (293)
109 KOG1812 Predicted E3 ubiquitin 86.4 0.28 6E-06 48.8 0.8 37 231-267 146-183 (384)
110 COG5220 TFB3 Cdk activating ki 85.9 0.27 5.9E-06 45.8 0.4 47 230-276 9-61 (314)
111 KOG3161 Predicted E3 ubiquitin 85.9 0.3 6.5E-06 51.1 0.8 43 231-276 11-54 (861)
112 KOG4367 Predicted Zn-finger pr 84.9 0.49 1.1E-05 47.5 1.7 35 230-267 3-37 (699)
113 COG5109 Uncharacterized conser 81.0 1.3 2.8E-05 42.9 2.8 48 227-274 332-382 (396)
114 KOG2066 Vacuolar assembly/sort 80.5 0.65 1.4E-05 49.7 0.7 54 231-285 784-841 (846)
115 KOG0825 PHD Zn-finger protein 77.6 1.2 2.6E-05 47.8 1.5 48 231-278 96-153 (1134)
116 KOG0802 E3 ubiquitin ligase [P 75.9 1.4 3E-05 45.7 1.5 48 230-284 478-525 (543)
117 COG5183 SSM4 Protein involved 75.6 1.3 2.9E-05 47.6 1.3 57 230-287 11-74 (1175)
118 KOG1815 Predicted E3 ubiquitin 75.4 1.4 3E-05 44.6 1.3 36 230-267 69-104 (444)
119 KOG2068 MOT2 transcription fac 75.0 2.2 4.8E-05 41.4 2.5 54 232-285 250-304 (327)
120 KOG0269 WD40 repeat-containing 74.8 2.1 4.6E-05 45.7 2.5 40 232-273 780-820 (839)
121 KOG1829 Uncharacterized conser 74.6 0.99 2.2E-05 47.1 0.1 40 231-274 511-556 (580)
122 KOG4718 Non-SMC (structural ma 73.2 1.8 3.8E-05 39.8 1.3 43 231-275 181-223 (235)
123 KOG3842 Adaptor protein Pellin 73.1 3.4 7.4E-05 40.1 3.2 53 230-282 340-417 (429)
124 PF02891 zf-MIZ: MIZ/SP-RING z 72.6 3.8 8.1E-05 28.9 2.6 43 232-277 3-50 (50)
125 KOG3113 Uncharacterized conser 71.9 5.9 0.00013 37.4 4.4 50 231-282 111-161 (293)
126 KOG1812 Predicted E3 ubiquitin 70.9 2.1 4.5E-05 42.7 1.3 68 207-274 280-351 (384)
127 KOG3579 Predicted E3 ubiquitin 68.7 3 6.6E-05 39.9 1.8 38 231-269 268-307 (352)
128 PF13901 DUF4206: Domain of un 62.7 4.8 0.0001 36.4 1.9 39 231-275 152-196 (202)
129 PF10571 UPF0547: Uncharacteri 60.1 4.2 9.1E-05 24.9 0.7 22 233-256 2-24 (26)
130 PF04710 Pellino: Pellino; In 60.0 2.9 6.4E-05 41.6 0.0 49 231-279 328-401 (416)
131 KOG3005 GIY-YIG type nuclease 58.5 5.2 0.00011 37.9 1.4 48 232-279 183-243 (276)
132 KOG2807 RNA polymerase II tran 58.4 8.6 0.00019 37.5 2.8 67 209-276 308-375 (378)
133 PF13719 zinc_ribbon_5: zinc-r 57.8 5.3 0.00012 26.3 1.0 26 232-257 3-36 (37)
134 PF06844 DUF1244: Protein of u 54.7 7 0.00015 29.4 1.2 44 255-300 11-62 (68)
135 PF07191 zinc-ribbons_6: zinc- 54.4 1.5 3.2E-05 33.4 -2.4 39 232-278 2-40 (70)
136 smart00132 LIM Zinc-binding do 54.4 11 0.00025 23.5 2.1 37 233-278 1-37 (39)
137 PF07304 SRA1: Steroid recepto 54.0 54 0.0012 28.5 6.9 37 51-87 106-144 (157)
138 PF04216 FdhE: Protein involve 53.6 1.8 3.8E-05 41.2 -2.7 45 231-276 172-219 (290)
139 PF07975 C1_4: TFIIH C1-like d 53.6 11 0.00023 27.0 2.0 41 234-275 2-50 (51)
140 PF06906 DUF1272: Protein of u 53.0 21 0.00045 26.1 3.4 47 233-281 7-54 (57)
141 PF01363 FYVE: FYVE zinc finge 50.5 7.1 0.00015 28.6 0.7 35 231-265 9-44 (69)
142 KOG4451 Uncharacterized conser 49.5 9.2 0.0002 35.6 1.4 31 259-289 254-284 (286)
143 cd00065 FYVE FYVE domain; Zinc 49.4 11 0.00024 26.4 1.6 35 232-266 3-38 (57)
144 PF04710 Pellino: Pellino; In 49.2 7.8 0.00017 38.7 1.0 44 232-278 278-338 (416)
145 TIGR00622 ssl1 transcription f 49.2 18 0.00038 30.0 2.9 45 231-275 55-110 (112)
146 PF13717 zinc_ribbon_4: zinc-r 48.2 10 0.00023 24.8 1.2 25 233-257 4-36 (36)
147 smart00249 PHD PHD zinc finger 48.0 9.3 0.0002 24.8 0.9 30 233-263 1-31 (47)
148 COG3813 Uncharacterized protei 44.7 30 0.00064 26.7 3.3 57 233-291 7-64 (84)
149 KOG2113 Predicted RNA binding 43.3 16 0.00035 35.5 2.1 47 227-278 339-386 (394)
150 PF00628 PHD: PHD-finger; Int 40.5 12 0.00025 25.7 0.5 42 233-275 1-49 (51)
151 PF10146 zf-C4H2: Zinc finger- 40.3 15 0.00033 34.1 1.4 24 266-289 206-229 (230)
152 smart00064 FYVE Protein presen 39.5 21 0.00046 26.0 1.8 36 231-266 10-46 (68)
153 PRK11088 rrmA 23S rRNA methylt 39.5 18 0.00038 33.7 1.7 27 232-258 3-29 (272)
154 PF11023 DUF2614: Protein of u 38.0 26 0.00056 29.1 2.2 19 264-282 81-99 (114)
155 PF05605 zf-Di19: Drought indu 37.8 12 0.00026 26.4 0.2 37 231-277 2-40 (54)
156 KOG1245 Chromatin remodeling c 36.3 12 0.00026 43.2 0.1 49 230-278 1107-1159(1404)
157 smart00647 IBR In Between Ring 35.2 12 0.00027 26.4 -0.1 20 245-264 38-58 (64)
158 COG4068 Uncharacterized protei 34.5 61 0.0013 23.9 3.4 19 267-285 7-25 (64)
159 PF00412 LIM: LIM domain; Int 34.5 27 0.00058 24.2 1.6 40 234-282 1-40 (58)
160 KOG4185 Predicted E3 ubiquitin 34.4 7.7 0.00017 36.6 -1.6 47 231-277 207-265 (296)
161 KOG2169 Zn-finger transcriptio 34.3 33 0.00072 36.5 3.0 49 231-286 306-363 (636)
162 COG5627 MMS21 DNA repair prote 32.9 33 0.00072 32.2 2.3 50 231-282 189-242 (275)
163 PRK05978 hypothetical protein; 32.7 25 0.00055 30.5 1.5 24 254-282 43-66 (148)
164 TIGR03349 IV_VI_DotU type IV / 32.5 3.5E+02 0.0076 23.9 9.1 56 45-100 41-110 (183)
165 PF14569 zf-UDP: Zinc-binding 32.4 45 0.00098 26.0 2.6 49 231-279 9-62 (80)
166 PF06676 DUF1178: Protein of u 31.8 17 0.00037 31.6 0.2 21 252-277 10-41 (148)
167 PLN02189 cellulose synthase 31.5 37 0.00081 38.1 2.8 49 231-279 34-87 (1040)
168 KOG3799 Rab3 effector RIM1 and 31.5 12 0.00026 32.1 -0.7 43 228-276 62-115 (169)
169 PF08158 NUC130_3NT: NUC130/3N 31.2 87 0.0019 22.3 3.8 35 26-64 15-49 (52)
170 PF00956 NAP: Nucleosome assem 31.2 2.1E+02 0.0046 26.3 7.5 54 11-74 7-76 (244)
171 cd00350 rubredoxin_like Rubred 30.7 29 0.00063 22.1 1.1 9 268-276 17-25 (33)
172 TIGR01562 FdhE formate dehydro 30.4 13 0.00027 36.1 -0.9 45 231-276 184-232 (305)
173 COG3492 Uncharacterized protei 30.4 22 0.00048 28.5 0.7 38 255-292 42-84 (104)
174 KOG1729 FYVE finger containing 29.9 12 0.00027 35.9 -1.0 39 231-269 214-252 (288)
175 smart00531 TFIIE Transcription 29.1 46 0.00099 28.4 2.5 18 269-286 124-141 (147)
176 PF04423 Rad50_zn_hook: Rad50 29.0 20 0.00043 25.3 0.2 11 270-280 22-32 (54)
177 PF14311 DUF4379: Domain of un 28.9 32 0.0007 24.2 1.3 22 252-274 34-55 (55)
178 PF12731 Mating_N: Mating-type 27.7 3.1E+02 0.0067 21.7 8.2 57 4-60 11-75 (95)
179 PLN02436 cellulose synthase A 27.7 34 0.00073 38.5 1.7 49 231-279 36-89 (1094)
180 PF10171 DUF2366: Uncharacteri 27.6 1.9E+02 0.004 25.8 6.1 63 25-102 15-78 (173)
181 PF14357 DUF4404: Domain of un 27.2 2.9E+02 0.0064 21.4 6.5 17 7-23 2-18 (85)
182 KOG0824 Predicted E3 ubiquitin 27.2 26 0.00057 33.9 0.7 48 229-278 103-150 (324)
183 PRK14064 exodeoxyribonuclease 26.7 45 0.00099 25.5 1.8 55 20-106 4-58 (75)
184 KOG2231 Predicted E3 ubiquitin 26.7 41 0.00089 36.0 2.1 43 233-278 2-51 (669)
185 KOG2979 Protein involved in DN 26.7 32 0.00069 32.6 1.1 44 231-276 176-221 (262)
186 PRK03564 formate dehydrogenase 26.5 23 0.00049 34.4 0.1 44 231-276 187-234 (309)
187 PF06937 EURL: EURL protein; 26.4 70 0.0015 30.5 3.3 56 231-290 30-88 (285)
188 PF05597 Phasin: Poly(hydroxya 26.3 40 0.00087 28.7 1.6 16 68-83 20-35 (132)
189 KOG2041 WD40 repeat protein [G 26.2 77 0.0017 34.5 3.9 45 231-279 1131-1185(1189)
190 KOG2071 mRNA cleavage and poly 26.2 29 0.00062 36.4 0.8 35 230-264 512-556 (579)
191 PF13240 zinc_ribbon_2: zinc-r 26.1 13 0.00029 21.9 -1.0 7 270-276 15-21 (23)
192 PF13875 DUF4202: Domain of un 25.8 2.2E+02 0.0047 25.7 6.2 53 29-81 34-90 (185)
193 PF10083 DUF2321: Uncharacteri 25.6 31 0.00068 30.2 0.8 24 253-279 27-50 (158)
194 PF13832 zf-HC5HC2H_2: PHD-zin 24.6 39 0.00085 26.9 1.2 32 231-264 55-88 (110)
195 PF06750 DiS_P_DiS: Bacterial 24.4 45 0.00098 26.4 1.5 38 231-280 33-70 (92)
196 PF10497 zf-4CXXC_R1: Zinc-fin 24.3 43 0.00094 27.2 1.4 24 253-276 37-69 (105)
197 KOG2789 Putative Zn-finger pro 23.6 31 0.00067 34.7 0.4 32 232-264 75-106 (482)
198 KOG0956 PHD finger protein AF1 23.4 34 0.00073 36.7 0.7 48 231-278 117-181 (900)
199 COG2986 HutH Histidine ammonia 23.1 1.2E+02 0.0026 31.4 4.4 66 82-156 279-347 (498)
200 PRK14068 exodeoxyribonuclease 22.9 59 0.0013 25.0 1.8 55 20-106 4-58 (76)
201 KOG1309 Suppressor of G2 allel 22.4 82 0.0018 28.5 2.8 44 20-65 131-175 (196)
202 KOG1538 Uncharacterized conser 22.4 36 0.00079 36.6 0.7 91 12-114 751-848 (1081)
203 PF02318 FYVE_2: FYVE-type zin 22.2 44 0.00095 27.4 1.0 45 231-276 54-102 (118)
204 KOG4577 Transcription factor L 22.2 20 0.00044 34.5 -1.1 50 231-289 92-141 (383)
205 COG1645 Uncharacterized Zn-fin 21.5 48 0.001 28.3 1.1 13 231-243 28-40 (131)
206 PF14169 YdjO: Cold-inducible 21.2 50 0.0011 24.3 1.0 15 267-281 38-52 (59)
207 KOG1842 FYVE finger-containing 20.9 1.4E+02 0.003 30.6 4.4 35 230-264 179-214 (505)
208 PF07282 OrfB_Zn_ribbon: Putat 20.8 71 0.0015 23.2 1.8 32 230-261 27-61 (69)
209 PRK04023 DNA polymerase II lar 20.7 80 0.0017 35.5 2.9 50 231-286 626-681 (1121)
210 PHA02675 ORF104 fusion protein 20.7 4.3E+02 0.0093 20.9 6.1 43 2-52 30-76 (90)
211 TIGR00373 conserved hypothetic 20.7 50 0.0011 28.7 1.1 21 267-287 127-147 (158)
212 PF02734 Dak2: DAK2 domain; I 20.6 5.7E+02 0.012 22.2 9.1 95 7-104 11-111 (175)
213 PF09723 Zn-ribbon_8: Zinc rib 20.5 24 0.00052 23.7 -0.7 25 251-276 10-34 (42)
214 KOG4021 Mitochondrial ribosoma 20.3 49 0.0011 30.2 1.0 22 258-279 97-119 (239)
215 PF05715 zf-piccolo: Piccolo Z 20.2 57 0.0012 24.1 1.1 11 269-279 3-13 (61)
216 PRK11827 hypothetical protein; 20.1 35 0.00076 25.2 0.0 19 263-281 3-21 (60)
217 KOG3726 Uncharacterized conser 20.0 51 0.0011 35.3 1.2 41 232-275 655-696 (717)
No 1
>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.53 E-value=3.3e-15 Score=143.63 Aligned_cols=77 Identities=39% Similarity=0.863 Sum_probs=65.3
Q ss_pred CCCHHHHhhCCCccchhHHhhhcCCcccccccccccccCCccEEeCCCCccChhhHHHHHhcCCC-CCCcccccCCCCcc
Q 021283 206 PASKEVVAKLPVITLTEEILDKLGHDAECAICKENLLVGDKMQELPCKHTFHPPCLKPWLDEHNS-CPICRHELQTDDHA 284 (314)
Q Consensus 206 ~~s~e~i~~Lp~~~~~~~~~~~~~~~~~C~ICLe~~~~~~~v~~LPCgH~FH~~CI~~WL~~~~t-CPvCR~~l~~~d~~ 284 (314)
.+.+..+.++|..+++..... .....|+||+|+|..|++++.|||+|.||..||++||..+.+ ||+||+++.++...
T Consensus 206 r~~k~~l~~~p~~~f~~~~~~--~~~~~CaIClEdY~~GdklRiLPC~H~FH~~CIDpWL~~~r~~CPvCK~di~~~~~~ 283 (348)
T KOG4628|consen 206 RLIKRLLKKLPVRTFTKGDDE--DATDTCAICLEDYEKGDKLRILPCSHKFHVNCIDPWLTQTRTFCPVCKRDIRTDSGS 283 (348)
T ss_pred hhHHHHHhhCCcEEecccccc--CCCceEEEeecccccCCeeeEecCCCchhhccchhhHhhcCccCCCCCCcCCCCCCC
Confidence 688999999999999875321 112599999999999999999999999999999999998865 99999988765533
No 2
>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A ....
Probab=99.49 E-value=9.5e-15 Score=100.56 Aligned_cols=43 Identities=53% Similarity=1.282 Sum_probs=40.5
Q ss_pred cccccccccccCCccEEeCCCCccChhhHHHHHhcCCCCCCcc
Q 021283 233 ECAICKENLLVGDKMQELPCKHTFHPPCLKPWLDEHNSCPICR 275 (314)
Q Consensus 233 ~C~ICLe~~~~~~~v~~LPCgH~FH~~CI~~WL~~~~tCPvCR 275 (314)
+|+||++.|..++.++.++|+|.||..||..|++.+.+||+||
T Consensus 2 ~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~~~~~~~~CP~CR 44 (44)
T PF13639_consen 2 ECPICLEEFEDGEKVVKLPCGHVFHRSCIKEWLKRNNSCPVCR 44 (44)
T ss_dssp CETTTTCBHHTTSCEEEETTSEEEEHHHHHHHHHHSSB-TTTH
T ss_pred CCcCCChhhcCCCeEEEccCCCeeCHHHHHHHHHhCCcCCccC
Confidence 7999999998888999999999999999999999999999997
No 3
>PHA02929 N1R/p28-like protein; Provisional
Probab=99.34 E-value=1.4e-12 Score=120.27 Aligned_cols=74 Identities=30% Similarity=0.596 Sum_probs=57.8
Q ss_pred CCCHHHHhhCCCccchhHHhhhcCCcccccccccccccCCc-----cEEeCCCCccChhhHHHHHhcCCCCCCcccccC
Q 021283 206 PASKEVVAKLPVITLTEEILDKLGHDAECAICKENLLVGDK-----MQELPCKHTFHPPCLKPWLDEHNSCPICRHELQ 279 (314)
Q Consensus 206 ~~s~e~i~~Lp~~~~~~~~~~~~~~~~~C~ICLe~~~~~~~-----v~~LPCgH~FH~~CI~~WL~~~~tCPvCR~~l~ 279 (314)
+.++..++.+|.+...-........+.+|+||++.+..+.. .+.++|+|.||..||.+|+..+.+||+||.++.
T Consensus 149 ~~~~~~i~~lp~vl~~~e~~~~~~~~~eC~ICle~~~~~~~~~~~~~vl~~C~H~FC~~CI~~Wl~~~~tCPlCR~~~~ 227 (238)
T PHA02929 149 KNYKKFLKTIPSVLSEYEKLYNRSKDKECAICMEKVYDKEIKNMYFGILSNCNHVFCIECIDIWKKEKNTCPVCRTPFI 227 (238)
T ss_pred chhHHHHHhcchhhhhhhhhhcCCCCCCCccCCcccccCccccccceecCCCCCcccHHHHHHHHhcCCCCCCCCCEee
Confidence 45788899999887654433344567899999999754321 234569999999999999999999999999875
No 4
>COG5243 HRD1 HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones]
Probab=99.22 E-value=7.9e-12 Score=119.90 Aligned_cols=72 Identities=36% Similarity=0.792 Sum_probs=54.3
Q ss_pred CCHHHHhhCCCccchhHHhhhcCCcccccccccccccCC----------ccEEeCCCCccChhhHHHHHhcCCCCCCccc
Q 021283 207 ASKEVVAKLPVITLTEEILDKLGHDAECAICKENLLVGD----------KMQELPCKHTFHPPCLKPWLDEHNSCPICRH 276 (314)
Q Consensus 207 ~s~e~i~~Lp~~~~~~~~~~~~~~~~~C~ICLe~~~~~~----------~v~~LPCgH~FH~~CI~~WL~~~~tCPvCR~ 276 (314)
+.++.-+.++.++..+. ..+|..|.||++++...+ ++.+|||||+||.+|++.|+.++.+||+||.
T Consensus 267 ~~kdl~~~~~t~t~eql----~n~D~~C~ICmde~~h~~~~~~~~~~~~~pKrLpCGHilHl~CLknW~ERqQTCPICr~ 342 (491)
T COG5243 267 ATKDLNAMYPTATEEQL----TNSDRTCTICMDEMFHPDHEPLPRGLDMTPKRLPCGHILHLHCLKNWLERQQTCPICRR 342 (491)
T ss_pred HhhHHHhhcchhhhhhh----cCCCCeEEEecccccCCCCccCcccccCCcccccccceeeHHHHHHHHHhccCCCcccC
Confidence 44555556665554332 346789999999954322 3688999999999999999999999999999
Q ss_pred ccCCCC
Q 021283 277 ELQTDD 282 (314)
Q Consensus 277 ~l~~~d 282 (314)
++..+.
T Consensus 343 p~ifd~ 348 (491)
T COG5243 343 PVIFDQ 348 (491)
T ss_pred cccccc
Confidence 965443
No 5
>PF12678 zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This domain constitutes a conserved region found in proteins that participate in diverse functions relevant to chromosome metabolism and cell cycle control [].The domain contains 8 cysteine/ histidine residues which are proposed to be the conserved residues involved in zinc binding.; PDB: 4A0C_D 4A0L_I 4A0K_B 2ECL_A 1LDK_C 3RTR_F 3DQV_Y 1U6G_B 1LDJ_B 2HYE_D ....
Probab=99.20 E-value=9.4e-12 Score=95.06 Aligned_cols=45 Identities=44% Similarity=1.007 Sum_probs=36.1
Q ss_pred cccccccccccccC----------CccEEeCCCCccChhhHHHHHhcCCCCCCcc
Q 021283 231 DAECAICKENLLVG----------DKMQELPCKHTFHPPCLKPWLDEHNSCPICR 275 (314)
Q Consensus 231 ~~~C~ICLe~~~~~----------~~v~~LPCgH~FH~~CI~~WL~~~~tCPvCR 275 (314)
+..|+||++.|... -.+...+|||.||..||.+||+.+.+||+||
T Consensus 19 ~d~C~IC~~~l~~~~~~~~~~~~~~~i~~~~C~H~FH~~Ci~~Wl~~~~~CP~CR 73 (73)
T PF12678_consen 19 DDNCAICREPLEDPCPECQAPQDECPIVWGPCGHIFHFHCISQWLKQNNTCPLCR 73 (73)
T ss_dssp CSBETTTTSBTTSTTCCHHHCTTTS-EEEETTSEEEEHHHHHHHHTTSSB-TTSS
T ss_pred CCcccccChhhhChhhhhcCCccccceEecccCCCEEHHHHHHHHhcCCcCCCCC
Confidence 45699999999321 2345567999999999999999999999998
No 6
>COG5540 RING-finger-containing ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.18 E-value=1.6e-11 Score=115.16 Aligned_cols=52 Identities=40% Similarity=1.012 Sum_probs=47.1
Q ss_pred CCcccccccccccccCCccEEeCCCCccChhhHHHHHh-cCCCCCCcccccCC
Q 021283 229 GHDAECAICKENLLVGDKMQELPCKHTFHPPCLKPWLD-EHNSCPICRHELQT 280 (314)
Q Consensus 229 ~~~~~C~ICLe~~~~~~~v~~LPCgH~FH~~CI~~WL~-~~~tCPvCR~~l~~ 280 (314)
+..-+|+||++.|..++.++.+||.|.||..|+.+|+. -+..||+||+++++
T Consensus 321 ~~GveCaICms~fiK~d~~~vlPC~H~FH~~Cv~kW~~~y~~~CPvCrt~iPP 373 (374)
T COG5540 321 DKGVECAICMSNFIKNDRLRVLPCDHRFHVGCVDKWLLGYSNKCPVCRTAIPP 373 (374)
T ss_pred CCCceEEEEhhhhcccceEEEeccCceechhHHHHHHhhhcccCCccCCCCCC
Confidence 34579999999998889999999999999999999998 46689999999986
No 7
>PLN03208 E3 ubiquitin-protein ligase RMA2; Provisional
Probab=99.00 E-value=2.3e-10 Score=102.23 Aligned_cols=50 Identities=28% Similarity=0.769 Sum_probs=41.3
Q ss_pred CCcccccccccccccCCccEEeCCCCccChhhHHHHHhc----------------CCCCCCcccccCCC
Q 021283 229 GHDAECAICKENLLVGDKMQELPCKHTFHPPCLKPWLDE----------------HNSCPICRHELQTD 281 (314)
Q Consensus 229 ~~~~~C~ICLe~~~~~~~v~~LPCgH~FH~~CI~~WL~~----------------~~tCPvCR~~l~~~ 281 (314)
.++.+|+||++.+. .++.++|||.||..||..|+.. ...||+||.++...
T Consensus 16 ~~~~~CpICld~~~---dPVvT~CGH~FC~~CI~~wl~~s~~s~~~~~~~~~~k~~~~CPvCR~~Is~~ 81 (193)
T PLN03208 16 GGDFDCNICLDQVR---DPVVTLCGHLFCWPCIHKWTYASNNSRQRVDQYDHKREPPKCPVCKSDVSEA 81 (193)
T ss_pred CCccCCccCCCcCC---CcEEcCCCchhHHHHHHHHHHhccccccccccccccCCCCcCCCCCCcCChh
Confidence 45789999999873 4677899999999999999852 34799999998643
No 8
>PF13920 zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); PDB: 2YHN_B 2YHO_G 3T6P_A 2CSY_A 2VJE_B 2VJF_B 2HDP_B 2EA5_A 2ECG_A 3EB5_A ....
Probab=98.99 E-value=2.5e-10 Score=80.60 Aligned_cols=46 Identities=41% Similarity=0.920 Sum_probs=39.9
Q ss_pred cccccccccccccCCccEEeCCCCc-cChhhHHHHHhcCCCCCCcccccC
Q 021283 231 DAECAICKENLLVGDKMQELPCKHT-FHPPCLKPWLDEHNSCPICRHELQ 279 (314)
Q Consensus 231 ~~~C~ICLe~~~~~~~v~~LPCgH~-FH~~CI~~WL~~~~tCPvCR~~l~ 279 (314)
+..|.||++.. ..++.+||||. ||..|+..|+.....||+||.+|.
T Consensus 2 ~~~C~iC~~~~---~~~~~~pCgH~~~C~~C~~~~~~~~~~CP~Cr~~i~ 48 (50)
T PF13920_consen 2 DEECPICFENP---RDVVLLPCGHLCFCEECAERLLKRKKKCPICRQPIE 48 (50)
T ss_dssp HSB-TTTSSSB---SSEEEETTCEEEEEHHHHHHHHHTTSBBTTTTBB-S
T ss_pred cCCCccCCccC---CceEEeCCCChHHHHHHhHHhcccCCCCCcCChhhc
Confidence 56899999986 45889999999 999999999999999999999874
No 9
>cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)
Probab=98.94 E-value=6.7e-10 Score=74.52 Aligned_cols=44 Identities=41% Similarity=1.105 Sum_probs=36.7
Q ss_pred cccccccccccCCccEEeCCCCccChhhHHHHHhc-CCCCCCccccc
Q 021283 233 ECAICKENLLVGDKMQELPCKHTFHPPCLKPWLDE-HNSCPICRHEL 278 (314)
Q Consensus 233 ~C~ICLe~~~~~~~v~~LPCgH~FH~~CI~~WL~~-~~tCPvCR~~l 278 (314)
+|+||++.+ .......+|+|.||..|+..|+.. ...||+||..+
T Consensus 1 ~C~iC~~~~--~~~~~~~~C~H~~c~~C~~~~~~~~~~~Cp~C~~~~ 45 (45)
T cd00162 1 ECPICLEEF--REPVVLLPCGHVFCRSCIDKWLKSGKNTCPLCRTPI 45 (45)
T ss_pred CCCcCchhh--hCceEecCCCChhcHHHHHHHHHhCcCCCCCCCCcC
Confidence 599999998 244555559999999999999997 77899999764
No 10
>PF13923 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); PDB: 3HCU_A 2ECI_A 2JMD_A 3HCS_B 3HCT_A 3ZTG_A 2YUR_A 3L11_A.
Probab=98.90 E-value=7.5e-10 Score=74.26 Aligned_cols=39 Identities=36% Similarity=1.048 Sum_probs=33.3
Q ss_pred ccccccccccCCccEEeCCCCccChhhHHHHHhcCCCCCCc
Q 021283 234 CAICKENLLVGDKMQELPCKHTFHPPCLKPWLDEHNSCPIC 274 (314)
Q Consensus 234 C~ICLe~~~~~~~v~~LPCgH~FH~~CI~~WL~~~~tCPvC 274 (314)
|+||++.+. +.++.++|||.||..||..|+..+..||+|
T Consensus 1 C~iC~~~~~--~~~~~~~CGH~fC~~C~~~~~~~~~~CP~C 39 (39)
T PF13923_consen 1 CPICLDELR--DPVVVTPCGHSFCKECIEKYLEKNPKCPVC 39 (39)
T ss_dssp ETTTTSB-S--SEEEECTTSEEEEHHHHHHHHHCTSB-TTT
T ss_pred CCCCCCccc--CcCEECCCCCchhHHHHHHHHHCcCCCcCC
Confidence 899999984 355789999999999999999998899998
No 11
>smart00504 Ubox Modified RING finger domain. Modified RING finger domain, without the full complement of Zn2+-binding ligands. Probable involvement in E2-dependent ubiquitination.
Probab=98.86 E-value=3.4e-09 Score=77.50 Aligned_cols=50 Identities=24% Similarity=0.428 Sum_probs=43.0
Q ss_pred ccccccccccccCCccEEeCCCCccChhhHHHHHhcCCCCCCcccccCCCCcc
Q 021283 232 AECAICKENLLVGDKMQELPCKHTFHPPCLKPWLDEHNSCPICRHELQTDDHA 284 (314)
Q Consensus 232 ~~C~ICLe~~~~~~~v~~LPCgH~FH~~CI~~WL~~~~tCPvCR~~l~~~d~~ 284 (314)
..|+||.+.+. .++.+||||+|++.||..|+..+.+||+|+.++..++..
T Consensus 2 ~~Cpi~~~~~~---~Pv~~~~G~v~~~~~i~~~~~~~~~cP~~~~~~~~~~l~ 51 (63)
T smart00504 2 FLCPISLEVMK---DPVILPSGQTYERRAIEKWLLSHGTDPVTGQPLTHEDLI 51 (63)
T ss_pred cCCcCCCCcCC---CCEECCCCCEEeHHHHHHHHHHCCCCCCCcCCCChhhce
Confidence 47999999984 367889999999999999999989999999998655433
No 12
>KOG0317 consensus Predicted E3 ubiquitin ligase, integral peroxisomal membrane protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.84 E-value=1.2e-09 Score=102.24 Aligned_cols=51 Identities=31% Similarity=0.814 Sum_probs=44.6
Q ss_pred CcccccccccccccCCccEEeCCCCccChhhHHHHHhcCCCCCCcccccCCCCc
Q 021283 230 HDAECAICKENLLVGDKMQELPCKHTFHPPCLKPWLDEHNSCPICRHELQTDDH 283 (314)
Q Consensus 230 ~~~~C~ICLe~~~~~~~v~~LPCgH~FH~~CI~~WL~~~~tCPvCR~~l~~~d~ 283 (314)
.+..|.|||+.. ..+.-+||||+||-.||..|......||+||..+.+.+.
T Consensus 238 a~~kC~LCLe~~---~~pSaTpCGHiFCWsCI~~w~~ek~eCPlCR~~~~pskv 288 (293)
T KOG0317|consen 238 ATRKCSLCLENR---SNPSATPCGHIFCWSCILEWCSEKAECPLCREKFQPSKV 288 (293)
T ss_pred CCCceEEEecCC---CCCCcCcCcchHHHHHHHHHHccccCCCcccccCCCcce
Confidence 357899999996 456779999999999999999999999999999877653
No 13
>KOG0320 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.83 E-value=1.6e-09 Score=95.00 Aligned_cols=51 Identities=27% Similarity=0.663 Sum_probs=42.8
Q ss_pred CcccccccccccccCCccEEeCCCCccChhhHHHHHhcCCCCCCcccccCCC
Q 021283 230 HDAECAICKENLLVGDKMQELPCKHTFHPPCLKPWLDEHNSCPICRHELQTD 281 (314)
Q Consensus 230 ~~~~C~ICLe~~~~~~~v~~LPCgH~FH~~CI~~WL~~~~tCPvCR~~l~~~ 281 (314)
....|||||+.+.. ..++...|||+||..||..-++....||+||..|..+
T Consensus 130 ~~~~CPiCl~~~se-k~~vsTkCGHvFC~~Cik~alk~~~~CP~C~kkIt~k 180 (187)
T KOG0320|consen 130 GTYKCPICLDSVSE-KVPVSTKCGHVFCSQCIKDALKNTNKCPTCRKKITHK 180 (187)
T ss_pred cccCCCceecchhh-ccccccccchhHHHHHHHHHHHhCCCCCCcccccchh
Confidence 45799999999853 2346678999999999999999999999999877543
No 14
>PF15227 zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB: 2EGP_A 2ECV_A 2ECJ_A 2YSL_A 2YSJ_A.
Probab=98.83 E-value=2.2e-09 Score=73.49 Aligned_cols=38 Identities=39% Similarity=0.906 Sum_probs=29.8
Q ss_pred ccccccccccCCccEEeCCCCccChhhHHHHHhcC----CCCCCc
Q 021283 234 CAICKENLLVGDKMQELPCKHTFHPPCLKPWLDEH----NSCPIC 274 (314)
Q Consensus 234 C~ICLe~~~~~~~v~~LPCgH~FH~~CI~~WL~~~----~tCPvC 274 (314)
|+||++.| ..++.|+|||.||..||..|++.. ..||.|
T Consensus 1 CpiC~~~~---~~Pv~l~CGH~FC~~Cl~~~~~~~~~~~~~CP~C 42 (42)
T PF15227_consen 1 CPICLDLF---KDPVSLPCGHSFCRSCLERLWKEPSGSGFSCPEC 42 (42)
T ss_dssp ETTTTSB----SSEEE-SSSSEEEHHHHHHHHCCSSSST---SSS
T ss_pred CCccchhh---CCccccCCcCHHHHHHHHHHHHccCCcCCCCcCC
Confidence 89999999 568999999999999999998853 369988
No 15
>PHA02926 zinc finger-like protein; Provisional
Probab=98.82 E-value=2e-09 Score=97.66 Aligned_cols=55 Identities=29% Similarity=0.779 Sum_probs=40.7
Q ss_pred hhhcCCcccccccccccccC-----CccEEe-CCCCccChhhHHHHHhcC------CCCCCcccccC
Q 021283 225 LDKLGHDAECAICKENLLVG-----DKMQEL-PCKHTFHPPCLKPWLDEH------NSCPICRHELQ 279 (314)
Q Consensus 225 ~~~~~~~~~C~ICLe~~~~~-----~~v~~L-PCgH~FH~~CI~~WL~~~------~tCPvCR~~l~ 279 (314)
.-....+.+|+||++..-.. .....| +|+|.||..||..|...+ .+||+||..+.
T Consensus 164 ~~~~SkE~eCgICmE~I~eK~~~~eRrFGIL~~CnHsFCl~CIr~Wr~~r~~~~~~rsCPiCR~~f~ 230 (242)
T PHA02926 164 VYRVSKEKECGICYEVVYSKRLENDRYFGLLDSCNHIFCITCINIWHRTRRETGASDNCPICRTRFR 230 (242)
T ss_pred HHhccCCCCCccCccccccccccccccccccCCCCchHHHHHHHHHHHhccccCcCCcCCCCcceee
Confidence 33445688999999986322 123445 599999999999998743 36999998764
No 16
>KOG0823 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.81 E-value=2.4e-09 Score=97.47 Aligned_cols=50 Identities=32% Similarity=0.731 Sum_probs=41.1
Q ss_pred cCCcccccccccccccCCccEEeCCCCccChhhHHHHHhcC---CCCCCcccccCC
Q 021283 228 LGHDAECAICKENLLVGDKMQELPCKHTFHPPCLKPWLDEH---NSCPICRHELQT 280 (314)
Q Consensus 228 ~~~~~~C~ICLe~~~~~~~v~~LPCgH~FH~~CI~~WL~~~---~tCPvCR~~l~~ 280 (314)
.+..++|.|||+.- ..++...|||+||-.||.+||..+ ..||+||..|..
T Consensus 44 ~~~~FdCNICLd~a---kdPVvTlCGHLFCWpClyqWl~~~~~~~~cPVCK~~Vs~ 96 (230)
T KOG0823|consen 44 DGGFFDCNICLDLA---KDPVVTLCGHLFCWPCLYQWLQTRPNSKECPVCKAEVSI 96 (230)
T ss_pred CCCceeeeeecccc---CCCEEeecccceehHHHHHHHhhcCCCeeCCcccccccc
Confidence 35578999999985 346677799999999999999853 378999998853
No 17
>PF12861 zf-Apc11: Anaphase-promoting complex subunit 11 RING-H2 finger
Probab=98.80 E-value=3.3e-09 Score=83.03 Aligned_cols=51 Identities=33% Similarity=0.813 Sum_probs=39.6
Q ss_pred Cccccccccccccc--------CC--ccEEeCCCCccChhhHHHHHhc---CCCCCCcccccCC
Q 021283 230 HDAECAICKENLLV--------GD--KMQELPCKHTFHPPCLKPWLDE---HNSCPICRHELQT 280 (314)
Q Consensus 230 ~~~~C~ICLe~~~~--------~~--~v~~LPCgH~FH~~CI~~WL~~---~~tCPvCR~~l~~ 280 (314)
.+..|.||...|.. ++ .++.-.|+|.||..||.+||.. +..||+||++...
T Consensus 20 ~dd~CgICr~~fdg~Cp~Ck~Pgd~Cplv~g~C~H~FH~hCI~kWl~~~~~~~~CPmCR~~w~~ 83 (85)
T PF12861_consen 20 NDDVCGICRMPFDGCCPDCKFPGDDCPLVWGKCSHNFHMHCILKWLSTQSSKGQCPMCRQPWKF 83 (85)
T ss_pred CCCceeeEecccccCCCCccCCCCCCceeeccCccHHHHHHHHHHHccccCCCCCCCcCCeeee
Confidence 47789999988862 22 2344459999999999999985 4689999998753
No 18
>KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.78 E-value=2e-09 Score=110.48 Aligned_cols=49 Identities=43% Similarity=1.064 Sum_probs=43.9
Q ss_pred CcccccccccccccCCc--cEEeCCCCccChhhHHHHHhcCCCCCCccccc
Q 021283 230 HDAECAICKENLLVGDK--MQELPCKHTFHPPCLKPWLDEHNSCPICRHEL 278 (314)
Q Consensus 230 ~~~~C~ICLe~~~~~~~--v~~LPCgH~FH~~CI~~WL~~~~tCPvCR~~l 278 (314)
.+..|+||++.+..+.. +.+|||+|+||..|+..|+++.++||+||..+
T Consensus 290 ~~~~C~IC~e~l~~~~~~~~~rL~C~Hifh~~CL~~W~er~qtCP~CR~~~ 340 (543)
T KOG0802|consen 290 SDELCIICLEELHSGHNITPKRLPCGHIFHDSCLRSWFERQQTCPTCRTVL 340 (543)
T ss_pred cCCeeeeechhhccccccccceeecccchHHHHHHHHHHHhCcCCcchhhh
Confidence 47899999999976544 78899999999999999999999999999944
No 19
>PF14634 zf-RING_5: zinc-RING finger domain
Probab=98.73 E-value=7.3e-09 Score=71.34 Aligned_cols=44 Identities=34% Similarity=0.726 Sum_probs=38.4
Q ss_pred cccccccccccCCccEEeCCCCccChhhHHHHHhcCCCCCCccc
Q 021283 233 ECAICKENLLVGDKMQELPCKHTFHPPCLKPWLDEHNSCPICRH 276 (314)
Q Consensus 233 ~C~ICLe~~~~~~~v~~LPCgH~FH~~CI~~WL~~~~tCPvCR~ 276 (314)
.|+||++.|........++|||+||..|+..+......||+||+
T Consensus 1 ~C~~C~~~~~~~~~~~l~~CgH~~C~~C~~~~~~~~~~CP~C~k 44 (44)
T PF14634_consen 1 HCNICFEKYSEERRPRLTSCGHIFCEKCLKKLKGKSVKCPICRK 44 (44)
T ss_pred CCcCcCccccCCCCeEEcccCCHHHHHHHHhhcCCCCCCcCCCC
Confidence 49999999955567888999999999999999866779999984
No 20
>TIGR00599 rad18 DNA repair protein rad18. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.70 E-value=8.4e-09 Score=101.67 Aligned_cols=51 Identities=33% Similarity=0.693 Sum_probs=44.1
Q ss_pred cCCcccccccccccccCCccEEeCCCCccChhhHHHHHhcCCCCCCcccccCCC
Q 021283 228 LGHDAECAICKENLLVGDKMQELPCKHTFHPPCLKPWLDEHNSCPICRHELQTD 281 (314)
Q Consensus 228 ~~~~~~C~ICLe~~~~~~~v~~LPCgH~FH~~CI~~WL~~~~tCPvCR~~l~~~ 281 (314)
+.....|+||++.|. .++.++|+|.||..||..|+.....||+||..+...
T Consensus 23 Le~~l~C~IC~d~~~---~PvitpCgH~FCs~CI~~~l~~~~~CP~Cr~~~~~~ 73 (397)
T TIGR00599 23 LDTSLRCHICKDFFD---VPVLTSCSHTFCSLCIRRCLSNQPKCPLCRAEDQES 73 (397)
T ss_pred cccccCCCcCchhhh---CccCCCCCCchhHHHHHHHHhCCCCCCCCCCccccc
Confidence 455789999999984 356789999999999999999888999999988654
No 21
>smart00184 RING Ring finger. E3 ubiquitin-protein ligase activity is intrinsic to the RING domain of c-Cbl and is likely to be a general function of this domain; Various RING fingers exhibit binding activity towards E2 ubiquitin-conjugating enzymes (Ubc' s)
Probab=98.67 E-value=1.6e-08 Score=65.34 Aligned_cols=38 Identities=50% Similarity=1.226 Sum_probs=33.6
Q ss_pred ccccccccccCCccEEeCCCCccChhhHHHHHh-cCCCCCCc
Q 021283 234 CAICKENLLVGDKMQELPCKHTFHPPCLKPWLD-EHNSCPIC 274 (314)
Q Consensus 234 C~ICLe~~~~~~~v~~LPCgH~FH~~CI~~WL~-~~~tCPvC 274 (314)
|+||++.. ...+.++|+|.||..|+..|+. ....||+|
T Consensus 1 C~iC~~~~---~~~~~~~C~H~~c~~C~~~~~~~~~~~CP~C 39 (39)
T smart00184 1 CPICLEEL---KDPVVLPCGHTFCRSCIRKWLKSGNNTCPIC 39 (39)
T ss_pred CCcCccCC---CCcEEecCCChHHHHHHHHHHHhCcCCCCCC
Confidence 89999984 5688899999999999999998 66789998
No 22
>PF00097 zf-C3HC4: Zinc finger, C3HC4 type (RING finger); InterPro: IPR018957 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C3HC4 type zinc-finger (RING finger) is a cysteine-rich domain of 40 to 60 residues that coordinates two zinc ions, and has the consensus sequence: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C where X is any amino acid []. Many proteins containing a RING finger play a key role in the ubiquitination pathway []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1CHC_A 2ECW_A 2Y43_B 1V87_A 2DJB_A 2H0D_B 3RPG_C 3KNV_A 2CKL_B 1JM7_A ....
Probab=98.64 E-value=1.6e-08 Score=68.05 Aligned_cols=39 Identities=41% Similarity=1.049 Sum_probs=33.3
Q ss_pred ccccccccccCCccEEeCCCCccChhhHHHHHh--cCCCCCCc
Q 021283 234 CAICKENLLVGDKMQELPCKHTFHPPCLKPWLD--EHNSCPIC 274 (314)
Q Consensus 234 C~ICLe~~~~~~~v~~LPCgH~FH~~CI~~WL~--~~~tCPvC 274 (314)
|+||++.+.. ....++|+|.||..||..|++ ....||+|
T Consensus 1 C~iC~~~~~~--~~~~~~C~H~fC~~C~~~~~~~~~~~~CP~C 41 (41)
T PF00097_consen 1 CPICLEPFED--PVILLPCGHSFCRDCLRKWLENSGSVKCPLC 41 (41)
T ss_dssp ETTTSSBCSS--EEEETTTSEEEEHHHHHHHHHHTSSSBTTTT
T ss_pred CCcCCccccC--CCEEecCCCcchHHHHHHHHHhcCCccCCcC
Confidence 8999999843 335889999999999999999 55689998
No 23
>KOG2164 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.54 E-value=2.6e-08 Score=99.44 Aligned_cols=63 Identities=29% Similarity=0.571 Sum_probs=48.5
Q ss_pred cccccccccccccCCccEEeCCCCccChhhHHHHHhc-----CCCCCCcccccCCCCcchhhHHHHHHHHH
Q 021283 231 DAECAICKENLLVGDKMQELPCKHTFHPPCLKPWLDE-----HNSCPICRHELQTDDHAYESWKEREKEAQ 296 (314)
Q Consensus 231 ~~~C~ICLe~~~~~~~v~~LPCgH~FH~~CI~~WL~~-----~~tCPvCR~~l~~~d~~~~~~~~r~~~~~ 296 (314)
+..|||||+... ....+.|||+||..||.+++.. ...||+||..|..+|-..-.|....+.++
T Consensus 186 ~~~CPICL~~~~---~p~~t~CGHiFC~~CiLqy~~~s~~~~~~~CPiC~s~I~~kdl~pv~~e~~qkke~ 253 (513)
T KOG2164|consen 186 DMQCPICLEPPS---VPVRTNCGHIFCGPCILQYWNYSAIKGPCSCPICRSTITLKDLLPVFIEDDQKKEE 253 (513)
T ss_pred CCcCCcccCCCC---cccccccCceeeHHHHHHHHhhhcccCCccCCchhhhccccceeeeeeccccccHH
Confidence 679999999963 3555669999999999997763 45899999999887776666655544433
No 24
>KOG0287 consensus Postreplication repair protein RAD18 [Replication, recombination and repair]
Probab=98.47 E-value=5.1e-08 Score=93.07 Aligned_cols=54 Identities=30% Similarity=0.611 Sum_probs=46.6
Q ss_pred cCCcccccccccccccCCccEEeCCCCccChhhHHHHHhcCCCCCCcccccCCCCcc
Q 021283 228 LGHDAECAICKENLLVGDKMQELPCKHTFHPPCLKPWLDEHNSCPICRHELQTDDHA 284 (314)
Q Consensus 228 ~~~~~~C~ICLe~~~~~~~v~~LPCgH~FH~~CI~~WL~~~~tCPvCR~~l~~~d~~ 284 (314)
+++-..|-||.+.|. .+++.||+|.||.-||+.+|..+..||.|+.++...+..
T Consensus 20 lD~lLRC~IC~eyf~---ip~itpCsHtfCSlCIR~~L~~~p~CP~C~~~~~Es~Lr 73 (442)
T KOG0287|consen 20 LDDLLRCGICFEYFN---IPMITPCSHTFCSLCIRKFLSYKPQCPTCCVTVTESDLR 73 (442)
T ss_pred hHHHHHHhHHHHHhc---CceeccccchHHHHHHHHHhccCCCCCceecccchhhhh
Confidence 344679999999994 488899999999999999999999999999998765543
No 25
>PF04564 U-box: U-box domain; InterPro: IPR003613 Quality control of intracellular proteins is essential for cellular homeostasis. Molecular chaperones recognise and contribute to the refolding of misfolded or unfolded proteins, whereas the ubiquitin-proteasome system mediates the degradation of such abnormal proteins. Ubiquitin-protein ligases (E3s) determine the substrate specificity for ubiquitylation and have been classified into HECT and RING-finger families. More recently, however, U-box proteins, which contain a domain (the U box) of about 70 amino acids that is conserved from yeast to humans, have been identified as a new type of E3 []. Members of the U-box family of proteins constitute a class of ubiquitin-protein ligases (E3s) distinct from the HECT-type and RING finger-containing E3 families []. Using yeast two-hybrid technology, all mammalian U-box proteins have been reported to interact with molecular chaperones or co-chaperones, including Hsp90, Hsp70, DnaJc7, EKN1, CRN, and VCP. This suggests that the function of U box-type E3s is to mediate the degradation of unfolded or misfolded proteins in conjunction with molecular chaperones as receptors that recognise such abnormal proteins [, ]. Unlike the RING finger domain, IPR001841 from INTERPRO, that is stabilised by Zn2+ ions coordinated by the cysteines and a histidine, the U-box scaffold is probably stabilised by a system of salt-bridges and hydrogen bonds. The charged and polar residues that participate in this network of bonds are more strongly conserved in the U-box proteins than in classic RING fingers, which supports their role in maintaining the stability of the U box. Thus, the U box appears to have evolved from a RING finger domain by appropriation of a new set of residues required to stabilise its structure, concomitant with the loss of the original, metal-chelating residues [].; GO: 0004842 ubiquitin-protein ligase activity, 0016567 protein ubiquitination, 0000151 ubiquitin ligase complex; PDB: 1T1H_A 2C2L_D 2C2V_V 1WGM_A 2KR4_A 3L1Z_B 3L1X_A 2KRE_A 3M63_A 2QIZ_A ....
Probab=98.44 E-value=1.7e-07 Score=71.46 Aligned_cols=54 Identities=24% Similarity=0.458 Sum_probs=41.1
Q ss_pred cccccccccccccCCccEEeCCCCccChhhHHHHHhc-CCCCCCcccccCCCCcchhh
Q 021283 231 DAECAICKENLLVGDKMQELPCKHTFHPPCLKPWLDE-HNSCPICRHELQTDDHAYES 287 (314)
Q Consensus 231 ~~~C~ICLe~~~~~~~v~~LPCgH~FH~~CI~~WL~~-~~tCPvCR~~l~~~d~~~~~ 287 (314)
.+.|+||.+-| ..++.+||||.|.+.||..||.. +.+||+|+.++...+.-...
T Consensus 4 ~f~CpIt~~lM---~dPVi~~~G~tyer~~I~~~l~~~~~~~P~t~~~l~~~~l~pn~ 58 (73)
T PF04564_consen 4 EFLCPITGELM---RDPVILPSGHTYERSAIERWLEQNGGTDPFTRQPLSESDLIPNR 58 (73)
T ss_dssp GGB-TTTSSB----SSEEEETTSEEEEHHHHHHHHCTTSSB-TTT-SB-SGGGSEE-H
T ss_pred ccCCcCcCcHh---hCceeCCcCCEEcHHHHHHHHHcCCCCCCCCCCcCCcccceECH
Confidence 57899999999 45888999999999999999998 88999999998766544433
No 26
>KOG1734 consensus Predicted RING-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.43 E-value=3.4e-08 Score=91.74 Aligned_cols=61 Identities=26% Similarity=0.791 Sum_probs=47.8
Q ss_pred CcccccccccccccCC-------ccEEeCCCCccChhhHHHHH--hcCCCCCCcccccCCCCcchhhHHH
Q 021283 230 HDAECAICKENLLVGD-------KMQELPCKHTFHPPCLKPWL--DEHNSCPICRHELQTDDHAYESWKE 290 (314)
Q Consensus 230 ~~~~C~ICLe~~~~~~-------~v~~LPCgH~FH~~CI~~WL--~~~~tCPvCR~~l~~~d~~~~~~~~ 290 (314)
++..|.||-..+.... +...|.|+|+||..||+.|- ..+.+||+|+..+..+.-..+.|.+
T Consensus 223 ~d~vCaVCg~~~~~s~~eegvienty~LsCnHvFHEfCIrGWcivGKkqtCPYCKekVdl~rmfsnpWek 292 (328)
T KOG1734|consen 223 SDSVCAVCGQQIDVSVDEEGVIENTYKLSCNHVFHEFCIRGWCIVGKKQTCPYCKEKVDLKRMFSNPWEK 292 (328)
T ss_pred CcchhHhhcchheeecchhhhhhhheeeecccchHHHhhhhheeecCCCCCchHHHHhhHhhhccCcccc
Confidence 4679999998886544 57889999999999999994 4788999999887655544444443
No 27
>COG5432 RAD18 RING-finger-containing E3 ubiquitin ligase [Signal transduction mechanisms]
Probab=98.40 E-value=1.1e-07 Score=89.27 Aligned_cols=50 Identities=30% Similarity=0.638 Sum_probs=43.4
Q ss_pred hcCCcccccccccccccCCccEEeCCCCccChhhHHHHHhcCCCCCCcccccC
Q 021283 227 KLGHDAECAICKENLLVGDKMQELPCKHTFHPPCLKPWLDEHNSCPICRHELQ 279 (314)
Q Consensus 227 ~~~~~~~C~ICLe~~~~~~~v~~LPCgH~FH~~CI~~WL~~~~tCPvCR~~l~ 279 (314)
.++.-..|-||-+.|. .++..+|||.||.-||+.+|..+..||+||.+..
T Consensus 21 ~LDs~lrC~IC~~~i~---ip~~TtCgHtFCslCIR~hL~~qp~CP~Cr~~~~ 70 (391)
T COG5432 21 GLDSMLRCRICDCRIS---IPCETTCGHTFCSLCIRRHLGTQPFCPVCREDPC 70 (391)
T ss_pred cchhHHHhhhhhheee---cceecccccchhHHHHHHHhcCCCCCccccccHH
Confidence 3445679999999994 4778899999999999999999999999998764
No 28
>KOG1493 consensus Anaphase-promoting complex (APC), subunit 11 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.36 E-value=6.2e-08 Score=73.93 Aligned_cols=51 Identities=35% Similarity=0.826 Sum_probs=38.0
Q ss_pred Cccccccccccccc--------CC-ccEEeC-CCCccChhhHHHHHhc---CCCCCCcccccCC
Q 021283 230 HDAECAICKENLLV--------GD-KMQELP-CKHTFHPPCLKPWLDE---HNSCPICRHELQT 280 (314)
Q Consensus 230 ~~~~C~ICLe~~~~--------~~-~v~~LP-CgH~FH~~CI~~WL~~---~~tCPvCR~~l~~ 280 (314)
.+..|-||.-.|.. ++ -+..+. |.|.||..||.+|+.. +..||+||+....
T Consensus 19 ~~e~CGiCRm~Fdg~Cp~Ck~PgDdCPLv~G~C~h~fh~hCI~~wl~~~tsq~~CPmcRq~~~~ 82 (84)
T KOG1493|consen 19 PDETCGICRMPFDGCCPDCKLPGDDCPLVWGYCLHAFHAHCILKWLNTPTSQGQCPMCRQTWQF 82 (84)
T ss_pred CCCccceEecccCCcCCCCcCCCCCCccHHHHHHHHHHHHHHHHHhcCccccccCCcchheeEe
Confidence 35589999888753 22 233344 9999999999999983 5589999987653
No 29
>COG5574 PEX10 RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.35 E-value=1.8e-07 Score=86.84 Aligned_cols=49 Identities=31% Similarity=0.747 Sum_probs=41.3
Q ss_pred cccccccccccccCCccEEeCCCCccChhhHHH-HHhcCC-CCCCcccccCCCC
Q 021283 231 DAECAICKENLLVGDKMQELPCKHTFHPPCLKP-WLDEHN-SCPICRHELQTDD 282 (314)
Q Consensus 231 ~~~C~ICLe~~~~~~~v~~LPCgH~FH~~CI~~-WL~~~~-tCPvCR~~l~~~d 282 (314)
+..|+||++.. ..+..+||||+||..||.. |-..+. .||+||+.+.+.+
T Consensus 215 d~kC~lC~e~~---~~ps~t~CgHlFC~~Cl~~~~t~~k~~~CplCRak~~pk~ 265 (271)
T COG5574 215 DYKCFLCLEEP---EVPSCTPCGHLFCLSCLLISWTKKKYEFCPLCRAKVYPKK 265 (271)
T ss_pred ccceeeeeccc---CCcccccccchhhHHHHHHHHHhhccccCchhhhhccchh
Confidence 78999999987 5577899999999999999 977665 5999999876543
No 30
>TIGR00570 cdk7 CDK-activating kinase assembly factor MAT1. All proteins in this family for which functions are known are cyclin dependent protein kinases that are components of TFIIH, a complex that is involved in nucleotide excision repair and transcription initiation. Also known as MAT1 (menage a trois 1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.34 E-value=5e-07 Score=86.24 Aligned_cols=52 Identities=27% Similarity=0.570 Sum_probs=38.3
Q ss_pred cccccccccc-cccCC-ccEEeCCCCccChhhHHHHHh-cCCCCCCcccccCCCC
Q 021283 231 DAECAICKEN-LLVGD-KMQELPCKHTFHPPCLKPWLD-EHNSCPICRHELQTDD 282 (314)
Q Consensus 231 ~~~C~ICLe~-~~~~~-~v~~LPCgH~FH~~CI~~WL~-~~~tCPvCR~~l~~~d 282 (314)
+..||||... +...+ .....+|||.||..|+...+. ....||.|+.++...+
T Consensus 3 ~~~CP~Ck~~~y~np~~kl~i~~CGH~~C~sCv~~l~~~~~~~CP~C~~~lrk~~ 57 (309)
T TIGR00570 3 DQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGSGSCPECDTPLRKNN 57 (309)
T ss_pred CCCCCcCCCCCccCcccccccCCCCCcccHHHHHHHhcCCCCCCCCCCCccchhh
Confidence 5689999985 22222 223338999999999999654 5568999999887655
No 31
>COG5194 APC11 Component of SCF ubiquitin ligase and anaphase-promoting complex [Posttranslational modification, protein turnover, chaperones / Cell division and chromosome partitioning]
Probab=98.34 E-value=2.9e-07 Score=70.89 Aligned_cols=31 Identities=35% Similarity=0.893 Sum_probs=27.9
Q ss_pred CCCCccChhhHHHHHhcCCCCCCcccccCCC
Q 021283 251 PCKHTFHPPCLKPWLDEHNSCPICRHELQTD 281 (314)
Q Consensus 251 PCgH~FH~~CI~~WL~~~~tCPvCR~~l~~~ 281 (314)
-|+|.||..||.+||..++.||+||++....
T Consensus 53 ~CnHaFH~HCI~rWL~Tk~~CPld~q~w~~~ 83 (88)
T COG5194 53 VCNHAFHDHCIYRWLDTKGVCPLDRQTWVLA 83 (88)
T ss_pred ecchHHHHHHHHHHHhhCCCCCCCCceeEEe
Confidence 3999999999999999999999999977543
No 32
>PF13445 zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A.
Probab=98.32 E-value=3.1e-07 Score=63.23 Aligned_cols=38 Identities=37% Similarity=0.816 Sum_probs=22.8
Q ss_pred cccccccccc-CCccEEeCCCCccChhhHHHHHhcC----CCCC
Q 021283 234 CAICKENLLV-GDKMQELPCKHTFHPPCLKPWLDEH----NSCP 272 (314)
Q Consensus 234 C~ICLe~~~~-~~~v~~LPCgH~FH~~CI~~WL~~~----~tCP 272 (314)
|+||.+ |.. ...++.|+|||+|+..||.+++..+ ..||
T Consensus 1 CpIc~e-~~~~~n~P~~L~CGH~~c~~cl~~l~~~~~~~~~kCP 43 (43)
T PF13445_consen 1 CPICKE-FSTEENPPMVLPCGHVFCKDCLQKLSKKSDRNRFKCP 43 (43)
T ss_dssp -TTT-----TTSS-EEE-SSS-EEEHHHHHHHHHH-S-S-B--T
T ss_pred CCcccc-ccCCCCCCEEEeCccHHHHHHHHHHHhcCCCCeeeCc
Confidence 999999 744 3457889999999999999999843 2576
No 33
>KOG0828 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.31 E-value=2e-07 Score=92.69 Aligned_cols=50 Identities=36% Similarity=0.905 Sum_probs=39.3
Q ss_pred ccccccccccccc---CC-----------ccEEeCCCCccChhhHHHHHh-cCCCCCCcccccCC
Q 021283 231 DAECAICKENLLV---GD-----------KMQELPCKHTFHPPCLKPWLD-EHNSCPICRHELQT 280 (314)
Q Consensus 231 ~~~C~ICLe~~~~---~~-----------~v~~LPCgH~FH~~CI~~WL~-~~~tCPvCR~~l~~ 280 (314)
...|+||+..+.- +. .-...||.|+||..|+.+|+. .+-.||+||.++++
T Consensus 571 t~dC~ICMt~I~l~~~~s~~~~~~~~~~~nYm~tPC~HifH~~CL~~WMd~ykl~CPvCR~pLPp 635 (636)
T KOG0828|consen 571 TNDCVICMTPIDLRSTGSDCMVASMMVRRNYMLTPCHHIFHRQCLLQWMDTYKLICPVCRCPLPP 635 (636)
T ss_pred cccceEeccccceeeccCcchhhhhhhhccccccchHHHHHHHHHHHHHhhhcccCCccCCCCCC
Confidence 5689999987642 11 123459999999999999999 45599999999975
No 34
>KOG2177 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.20 E-value=5.5e-07 Score=81.59 Aligned_cols=46 Identities=37% Similarity=0.767 Sum_probs=39.6
Q ss_pred cCCcccccccccccccCCccEEeCCCCccChhhHHHHHhcCCCCCCccc
Q 021283 228 LGHDAECAICKENLLVGDKMQELPCKHTFHPPCLKPWLDEHNSCPICRH 276 (314)
Q Consensus 228 ~~~~~~C~ICLe~~~~~~~v~~LPCgH~FH~~CI~~WL~~~~tCPvCR~ 276 (314)
..+...|+||++.|... ..+||+|.||..||..++.....||.||.
T Consensus 10 ~~~~~~C~iC~~~~~~p---~~l~C~H~~c~~C~~~~~~~~~~Cp~cr~ 55 (386)
T KOG2177|consen 10 LQEELTCPICLEYFREP---VLLPCGHNFCRACLTRSWEGPLSCPVCRP 55 (386)
T ss_pred ccccccChhhHHHhhcC---ccccccchHhHHHHHHhcCCCcCCcccCC
Confidence 44678999999999653 88999999999999999885568999993
No 35
>KOG2930 consensus SCF ubiquitin ligase, Rbx1 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.14 E-value=7.4e-07 Score=71.81 Aligned_cols=49 Identities=31% Similarity=0.764 Sum_probs=36.9
Q ss_pred Cccccccccccccc-------------CCccEEeC-CCCccChhhHHHHHhcCCCCCCccccc
Q 021283 230 HDAECAICKENLLV-------------GDKMQELP-CKHTFHPPCLKPWLDEHNSCPICRHEL 278 (314)
Q Consensus 230 ~~~~C~ICLe~~~~-------------~~~v~~LP-CgH~FH~~CI~~WL~~~~tCPvCR~~l 278 (314)
....|+||..-+-. ++-.+.-. |.|.||..||.+||+....||+|..+.
T Consensus 45 ~vDnCAICRnHIMd~CieCQa~~~~~~~EC~VaWG~CNHaFH~hCisrWlktr~vCPLdn~eW 107 (114)
T KOG2930|consen 45 VVDNCAICRNHIMDLCIECQANQSATSEECTVAWGVCNHAFHFHCISRWLKTRNVCPLDNKEW 107 (114)
T ss_pred eechhHHHHHHHHHHHHhhccCCCCCCCceEEEeeecchHHHHHHHHHHHhhcCcCCCcCcce
Confidence 35789999764321 12233333 999999999999999999999997754
No 36
>smart00744 RINGv The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins. Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity. The RING-variant domain is reminiscent of both the RING and the PHD domains and may represent an evolutionary intermediate. To describe this domain the term PHD/LAP domain has been used in the past. Extended description: The RING-variant (RINGv) domain contains a C4HC3 zinc-finger-like motif similar to the PHD domain, while some of the spacing between the Cys/His residues follow a pattern somewhat closer to that found in the RING domain. The RINGv domain, similar to the RING, PHD and LIM domains, is thought to bind two zinc ions co-ordinated by the highly conserved Cys and His residues. RING variant domain: C-x (2) -C-x(10-45)-C-x (1) -C-x (7) -H-x(2)-C-x(11-25)-C-x(2)-C As opposed to a PHD: C-x(1-2) -C-x (7-13)-C-x(2-4)-C-x(4-5)-H-x(2)-C-x(10-21)-C-x(2)-C Class
Probab=98.14 E-value=1.5e-06 Score=61.42 Aligned_cols=42 Identities=31% Similarity=0.829 Sum_probs=33.3
Q ss_pred cccccccccccCCccEEeCCC-----CccChhhHHHHHhcC--CCCCCcc
Q 021283 233 ECAICKENLLVGDKMQELPCK-----HTFHPPCLKPWLDEH--NSCPICR 275 (314)
Q Consensus 233 ~C~ICLe~~~~~~~v~~LPCg-----H~FH~~CI~~WL~~~--~tCPvCR 275 (314)
.|.||++ ...++.....||. |.+|..|+.+|+..+ .+||+|+
T Consensus 1 ~CrIC~~-~~~~~~~l~~PC~C~G~~~~vH~~Cl~~W~~~~~~~~C~iC~ 49 (49)
T smart00744 1 ICRICHD-EGDEGDPLVSPCRCKGSLKYVHQECLERWINESGNKTCEICK 49 (49)
T ss_pred CccCCCC-CCCCCCeeEeccccCCchhHHHHHHHHHHHHHcCCCcCCCCC
Confidence 4899998 3344556788985 899999999999754 4899995
No 37
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=98.08 E-value=1.4e-06 Score=85.97 Aligned_cols=48 Identities=31% Similarity=0.802 Sum_probs=38.3
Q ss_pred CcccccccccccccCC-ccEEeCCCCccChhhHHHHHhcCCCCCCcccccC
Q 021283 230 HDAECAICKENLLVGD-KMQELPCKHTFHPPCLKPWLDEHNSCPICRHELQ 279 (314)
Q Consensus 230 ~~~~C~ICLe~~~~~~-~v~~LPCgH~FH~~CI~~WL~~~~tCPvCR~~l~ 279 (314)
+-.+|||||+.+.... .++...|.|.||..|+..|. ..+||+||.-..
T Consensus 174 ELPTCpVCLERMD~s~~gi~t~~c~Hsfh~~cl~~w~--~~scpvcR~~q~ 222 (493)
T KOG0804|consen 174 ELPTCPVCLERMDSSTTGILTILCNHSFHCSCLMKWW--DSSCPVCRYCQS 222 (493)
T ss_pred cCCCcchhHhhcCccccceeeeecccccchHHHhhcc--cCcChhhhhhcC
Confidence 4579999999996533 24455599999999999994 578999998665
No 38
>COG5219 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=98.06 E-value=1.2e-06 Score=92.63 Aligned_cols=53 Identities=34% Similarity=0.830 Sum_probs=40.0
Q ss_pred cCCccccccccccccc-CC--ccEEeC-CCCccChhhHHHHHhc--CCCCCCcccccCC
Q 021283 228 LGHDAECAICKENLLV-GD--KMQELP-CKHTFHPPCLKPWLDE--HNSCPICRHELQT 280 (314)
Q Consensus 228 ~~~~~~C~ICLe~~~~-~~--~v~~LP-CgH~FH~~CI~~WL~~--~~tCPvCR~~l~~ 280 (314)
.....+|+||...+.. +. +-.+.| |.|-||..|+-+|++. +++||+||..++.
T Consensus 1466 fsG~eECaICYsvL~~vdr~lPskrC~TCknKFH~~CLyKWf~Ss~~s~CPlCRseitf 1524 (1525)
T COG5219 1466 FSGHEECAICYSVLDMVDRSLPSKRCATCKNKFHTRCLYKWFASSARSNCPLCRSEITF 1524 (1525)
T ss_pred cCCcchhhHHHHHHHHHhccCCccccchhhhhhhHHHHHHHHHhcCCCCCCcccccccc
Confidence 4567899999987752 12 122334 9999999999999985 5589999988763
No 39
>KOG0824 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.00 E-value=2.5e-06 Score=80.58 Aligned_cols=59 Identities=27% Similarity=0.483 Sum_probs=45.8
Q ss_pred cccccccccccccCCccEEeCCCCccChhhHHHHHh-cCCCCCCcccccCCCCcchhhHHHHH
Q 021283 231 DAECAICKENLLVGDKMQELPCKHTFHPPCLKPWLD-EHNSCPICRHELQTDDHAYESWKERE 292 (314)
Q Consensus 231 ~~~C~ICLe~~~~~~~v~~LPCgH~FH~~CI~~WL~-~~~tCPvCR~~l~~~d~~~~~~~~r~ 292 (314)
+.+|+||++.. ..++.|+|+|.||.-||..-.. ...+|++||.+|...=...+.-+.+-
T Consensus 7 ~~eC~IC~nt~---n~Pv~l~C~HkFCyiCiKGsy~ndk~~CavCR~pids~i~~~psl~~~L 66 (324)
T KOG0824|consen 7 KKECLICYNTG---NCPVNLYCFHKFCYICIKGSYKNDKKTCAVCRFPIDSTIDFEPSLKYRL 66 (324)
T ss_pred CCcceeeeccC---CcCccccccchhhhhhhcchhhcCCCCCceecCCCCcchhcchhhhhhh
Confidence 56999999997 4468899999999999987554 45679999999976555555555443
No 40
>PF11793 FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A.
Probab=97.99 E-value=1.4e-06 Score=66.07 Aligned_cols=49 Identities=31% Similarity=0.730 Sum_probs=23.3
Q ss_pred cccccccccccc-cCCc-cEEe---CCCCccChhhHHHHHhc---C--------CCCCCcccccC
Q 021283 231 DAECAICKENLL-VGDK-MQEL---PCKHTFHPPCLKPWLDE---H--------NSCPICRHELQ 279 (314)
Q Consensus 231 ~~~C~ICLe~~~-~~~~-v~~L---PCgH~FH~~CI~~WL~~---~--------~tCPvCR~~l~ 279 (314)
+.+|.||+..+. .+.. .... .|++.||..|+..||.. . +.||.|+.+|.
T Consensus 2 ~~~C~IC~~~~~~~~~~p~~~C~n~~C~~~fH~~CL~~wf~~~~~~~~~~~~~~G~CP~C~~~i~ 66 (70)
T PF11793_consen 2 ELECGICYSYRLDDGEIPDVVCPNPSCGKKFHLLCLSEWFLSLEKSRQSFIPIFGECPYCSSPIS 66 (70)
T ss_dssp --S-SSS--SS-TT-----B--S-TT----B-SGGGHHHHHHHHSSS-TTT--EEE-TTT-SEEE
T ss_pred CCCCCcCCcEecCCCCcCceEcCCcccCCHHHHHHHHHHHHHcccCCeeecccccCCcCCCCeee
Confidence 458999999875 2222 2222 39999999999999872 1 15999999885
No 41
>KOG4265 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.95 E-value=4.8e-06 Score=80.35 Aligned_cols=46 Identities=35% Similarity=0.814 Sum_probs=39.9
Q ss_pred cccccccccccccCCccEEeCCCCc-cChhhHHHHHhcCCCCCCcccccC
Q 021283 231 DAECAICKENLLVGDKMQELPCKHT-FHPPCLKPWLDEHNSCPICRHELQ 279 (314)
Q Consensus 231 ~~~C~ICLe~~~~~~~v~~LPCgH~-FH~~CI~~WL~~~~tCPvCR~~l~ 279 (314)
..+|.||+.+- ..++.|||.|. .|..|.+..--+++.||+||+++.
T Consensus 290 gkeCVIClse~---rdt~vLPCRHLCLCs~Ca~~Lr~q~n~CPICRqpi~ 336 (349)
T KOG4265|consen 290 GKECVICLSES---RDTVVLPCRHLCLCSGCAKSLRYQTNNCPICRQPIE 336 (349)
T ss_pred CCeeEEEecCC---cceEEecchhhehhHhHHHHHHHhhcCCCccccchH
Confidence 57999999986 45899999997 899999886667888999999885
No 42
>KOG0827 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.87 E-value=5.3e-06 Score=80.73 Aligned_cols=48 Identities=35% Similarity=0.910 Sum_probs=35.3
Q ss_pred cccccccccccccCCccEEeC-CCCccChhhHHHHHhc---CCCCCCccccc
Q 021283 231 DAECAICKENLLVGDKMQELP-CKHTFHPPCLKPWLDE---HNSCPICRHEL 278 (314)
Q Consensus 231 ~~~C~ICLe~~~~~~~v~~LP-CgH~FH~~CI~~WL~~---~~tCPvCR~~l 278 (314)
...|.||-+-+.....+.... |||+||..|+.+|+.. +..||+||-.+
T Consensus 4 ~A~C~Ic~d~~p~~~~l~~i~~cGhifh~~cl~qwfe~~Ps~R~cpic~ik~ 55 (465)
T KOG0827|consen 4 MAECHICIDGRPNDHELGPIGTCGHIFHTTCLTQWFEGDPSNRGCPICQIKL 55 (465)
T ss_pred cceeeEeccCCccccccccccchhhHHHHHHHHHHHccCCccCCCCceeecc
Confidence 358999944443334455555 9999999999999984 35899999333
No 43
>KOG4172 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.77 E-value=5e-06 Score=59.74 Aligned_cols=46 Identities=30% Similarity=0.650 Sum_probs=35.8
Q ss_pred cccccccccccccCCccEEeCCCCc-cChhhHHHHHh-cCCCCCCcccccC
Q 021283 231 DAECAICKENLLVGDKMQELPCKHT-FHPPCLKPWLD-EHNSCPICRHELQ 279 (314)
Q Consensus 231 ~~~C~ICLe~~~~~~~v~~LPCgH~-FH~~CI~~WL~-~~~tCPvCR~~l~ 279 (314)
+.+|.||++.-. .-+...|||+ .|..|-...++ .+..||+||.+|.
T Consensus 7 ~dECTICye~pv---dsVlYtCGHMCmCy~Cg~rl~~~~~g~CPiCRapi~ 54 (62)
T KOG4172|consen 7 SDECTICYEHPV---DSVLYTCGHMCMCYACGLRLKKALHGCCPICRAPIK 54 (62)
T ss_pred ccceeeeccCcc---hHHHHHcchHHhHHHHHHHHHHccCCcCcchhhHHH
Confidence 479999999853 2345669997 88999666555 7899999999874
No 44
>PF14835 zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM7_B.
Probab=97.77 E-value=5e-06 Score=61.79 Aligned_cols=50 Identities=24% Similarity=0.603 Sum_probs=24.6
Q ss_pred cccccccccccccCCccEEeCCCCccChhhHHHHHhcCCCCCCcccccCCCCcc
Q 021283 231 DAECAICKENLLVGDKMQELPCKHTFHPPCLKPWLDEHNSCPICRHELQTDDHA 284 (314)
Q Consensus 231 ~~~C~ICLe~~~~~~~v~~LPCgH~FH~~CI~~WL~~~~tCPvCR~~l~~~d~~ 284 (314)
-..|++|.+.+. +.+....|.|+||..||..-+. ..||+|+.+.-..|..
T Consensus 7 lLrCs~C~~~l~--~pv~l~~CeH~fCs~Ci~~~~~--~~CPvC~~Paw~qD~~ 56 (65)
T PF14835_consen 7 LLRCSICFDILK--EPVCLGGCEHIFCSSCIRDCIG--SECPVCHTPAWIQDIQ 56 (65)
T ss_dssp TTS-SSS-S--S--S-B---SSS--B-TTTGGGGTT--TB-SSS--B-S-SS--
T ss_pred hcCCcHHHHHhc--CCceeccCccHHHHHHhHHhcC--CCCCCcCChHHHHHHH
Confidence 468999999984 3333455999999999988655 3599999987666643
No 45
>KOG0311 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.76 E-value=3.5e-06 Score=81.08 Aligned_cols=50 Identities=32% Similarity=0.632 Sum_probs=39.8
Q ss_pred cCCcccccccccccccCCccEEeC-CCCccChhhHHHHHhc-CCCCCCcccccCC
Q 021283 228 LGHDAECAICKENLLVGDKMQELP-CKHTFHPPCLKPWLDE-HNSCPICRHELQT 280 (314)
Q Consensus 228 ~~~~~~C~ICLe~~~~~~~v~~LP-CgH~FH~~CI~~WL~~-~~tCPvCR~~l~~ 280 (314)
+..+..|+|||.-+. ..+..+ |.|.||..||..-|+. +.+||.||..+.+
T Consensus 40 ~~~~v~c~icl~llk---~tmttkeClhrfc~~ci~~a~r~gn~ecptcRk~l~S 91 (381)
T KOG0311|consen 40 FDIQVICPICLSLLK---KTMTTKECLHRFCFDCIWKALRSGNNECPTCRKKLVS 91 (381)
T ss_pred hhhhhccHHHHHHHH---hhcccHHHHHHHHHHHHHHHHHhcCCCCchHHhhccc
Confidence 345789999999984 334444 9999999999998874 6699999987753
No 46
>KOG1039 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.74 E-value=7.4e-06 Score=79.61 Aligned_cols=50 Identities=34% Similarity=0.877 Sum_probs=38.0
Q ss_pred CcccccccccccccCC----ccEEeC-CCCccChhhHHHHH--hc-----CCCCCCcccccC
Q 021283 230 HDAECAICKENLLVGD----KMQELP-CKHTFHPPCLKPWL--DE-----HNSCPICRHELQ 279 (314)
Q Consensus 230 ~~~~C~ICLe~~~~~~----~v~~LP-CgH~FH~~CI~~WL--~~-----~~tCPvCR~~l~ 279 (314)
.+..|.||++.....- .-.+|| |.|.||..||+.|- ++ ...||.||....
T Consensus 160 ~~k~CGICme~i~ek~~~~~rfgilpnC~H~~Cl~Cir~wr~~~q~~~~~sksCP~CRv~s~ 221 (344)
T KOG1039|consen 160 SEKECGICMETINEKAASERRFGILPNCNHSFCLNCIRKWRQATQFESKTSKSCPFCRVPSS 221 (344)
T ss_pred ccccceehhhhccccchhhhhcccCCCcchhhhhcHhHhhhhhhccccccccCCCcccCccc
Confidence 4679999999874322 133456 99999999999996 44 468999998664
No 47
>KOG4445 consensus Uncharacterized conserved protein, contains RWD domain [Function unknown]
Probab=97.73 E-value=1.3e-05 Score=75.76 Aligned_cols=54 Identities=24% Similarity=0.682 Sum_probs=44.3
Q ss_pred CCcccccccccccccCCccEEeCCCCccChhhHHHHHh-----------------------cCCCCCCcccccCCCC
Q 021283 229 GHDAECAICKENLLVGDKMQELPCKHTFHPPCLKPWLD-----------------------EHNSCPICRHELQTDD 282 (314)
Q Consensus 229 ~~~~~C~ICLe~~~~~~~v~~LPCgH~FH~~CI~~WL~-----------------------~~~tCPvCR~~l~~~d 282 (314)
.....|.|||.-|..++....++|-|.||..|+..+|. ....||+||..|..+.
T Consensus 113 ~p~gqCvICLygfa~~~~ft~T~C~Hy~H~~ClaRyl~~~~~~lrqe~q~~~~~~qh~~~~~eavcpVcre~i~~e~ 189 (368)
T KOG4445|consen 113 HPNGQCVICLYGFASSPAFTVTACDHYMHFACLARYLTECLTGLRQEIQDAQKERQHMKEQVEAVCPVCRERIKIEE 189 (368)
T ss_pred CCCCceEEEEEeecCCCceeeehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhhhhHhhhhccccc
Confidence 34679999999999888889999999999999987764 1125999999886544
No 48
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.70 E-value=3.1e-05 Score=75.88 Aligned_cols=52 Identities=27% Similarity=0.839 Sum_probs=39.8
Q ss_pred ccccccccccccc-CC-ccEEeCCCCccChhhHHHHHhc--CCCCCCcccccCCCC
Q 021283 231 DAECAICKENLLV-GD-KMQELPCKHTFHPPCLKPWLDE--HNSCPICRHELQTDD 282 (314)
Q Consensus 231 ~~~C~ICLe~~~~-~~-~v~~LPCgH~FH~~CI~~WL~~--~~tCPvCR~~l~~~d 282 (314)
..+||||++.+.. ++ .++.+.|||.|...||..||.+ ...||.|...-...+
T Consensus 4 g~tcpiclds~~~~g~hr~vsl~cghlFgs~cie~wl~k~~~~~cp~c~~katkr~ 59 (463)
T KOG1645|consen 4 GTTCPICLDSYTTAGNHRIVSLQCGHLFGSQCIEKWLGKKTKMQCPLCSGKATKRQ 59 (463)
T ss_pred cccCceeeeeeeecCceEEeeecccccccHHHHHHHHhhhhhhhCcccCChhHHHH
Confidence 4689999999864 33 3666779999999999999963 237999987654333
No 49
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=97.63 E-value=1.4e-05 Score=83.43 Aligned_cols=54 Identities=19% Similarity=0.551 Sum_probs=44.0
Q ss_pred hcCCcccccccccccccCCccEEeCCCCccChhhHHHHHh-cCCCCCCcccccCCCCc
Q 021283 227 KLGHDAECAICKENLLVGDKMQELPCKHTFHPPCLKPWLD-EHNSCPICRHELQTDDH 283 (314)
Q Consensus 227 ~~~~~~~C~ICLe~~~~~~~v~~LPCgH~FH~~CI~~WL~-~~~tCPvCR~~l~~~d~ 283 (314)
.+..-..||+|-..++ .+++..|+|.||..||.+-+. ++..||.|-..+.+-|.
T Consensus 639 ~yK~~LkCs~Cn~R~K---d~vI~kC~H~FC~~Cvq~r~etRqRKCP~Cn~aFganDv 693 (698)
T KOG0978|consen 639 EYKELLKCSVCNTRWK---DAVITKCGHVFCEECVQTRYETRQRKCPKCNAAFGANDV 693 (698)
T ss_pred HHHhceeCCCccCchh---hHHHHhcchHHHHHHHHHHHHHhcCCCCCCCCCCCcccc
Confidence 3445679999998874 366677999999999999887 68899999999876653
No 50
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=97.58 E-value=1.4e-05 Score=83.32 Aligned_cols=49 Identities=22% Similarity=0.474 Sum_probs=41.7
Q ss_pred cccccccccccccCCccEEeCCCCccChhhHHHHHhcCCCCCCcccccC
Q 021283 231 DAECAICKENLLVGDKMQELPCKHTFHPPCLKPWLDEHNSCPICRHELQ 279 (314)
Q Consensus 231 ~~~C~ICLe~~~~~~~v~~LPCgH~FH~~CI~~WL~~~~tCPvCR~~l~ 279 (314)
...|+||+..+.........+|+|+||..||..|-+.-.+||+||..+.
T Consensus 123 ~~~CP~Ci~s~~DqL~~~~k~c~H~FC~~Ci~sWsR~aqTCPiDR~EF~ 171 (1134)
T KOG0825|consen 123 ENQCPNCLKSCNDQLEESEKHTAHYFCEECVGSWSRCAQTCPVDRGEFG 171 (1134)
T ss_pred hhhhhHHHHHHHHHhhccccccccccHHHHhhhhhhhcccCchhhhhhh
Confidence 4589999999875555555679999999999999999999999998764
No 51
>KOG4159 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.41 E-value=7.1e-05 Score=74.19 Aligned_cols=48 Identities=38% Similarity=0.835 Sum_probs=42.7
Q ss_pred CcccccccccccccCCccEEeCCCCccChhhHHHHHhcCCCCCCcccccCC
Q 021283 230 HDAECAICKENLLVGDKMQELPCKHTFHPPCLKPWLDEHNSCPICRHELQT 280 (314)
Q Consensus 230 ~~~~C~ICLe~~~~~~~v~~LPCgH~FH~~CI~~WL~~~~tCPvCR~~l~~ 280 (314)
.+++|.||+..+ ..++.+||||.||..||.+-+.....||.||..+..
T Consensus 83 sef~c~vc~~~l---~~pv~tpcghs~c~~Cl~r~ld~~~~cp~Cr~~l~e 130 (398)
T KOG4159|consen 83 SEFECCVCSRAL---YPPVVTPCGHSFCLECLDRSLDQETECPLCRDELVE 130 (398)
T ss_pred chhhhhhhHhhc---CCCccccccccccHHHHHHHhccCCCCccccccccc
Confidence 478999999888 457788999999999999988888899999999875
No 52
>KOG1785 consensus Tyrosine kinase negative regulator CBL [Defense mechanisms]
Probab=97.28 E-value=8.9e-05 Score=72.61 Aligned_cols=46 Identities=37% Similarity=0.904 Sum_probs=38.3
Q ss_pred ccccccccccccCCccEEeCCCCccChhhHHHHHhc--CCCCCCcccccCC
Q 021283 232 AECAICKENLLVGDKMQELPCKHTFHPPCLKPWLDE--HNSCPICRHELQT 280 (314)
Q Consensus 232 ~~C~ICLe~~~~~~~v~~LPCgH~FH~~CI~~WL~~--~~tCPvCR~~l~~ 280 (314)
..|-||-+.= ..+.+-||||..|..|+..|-.. ..+||.||.+|.-
T Consensus 370 eLCKICaend---KdvkIEPCGHLlCt~CLa~WQ~sd~gq~CPFCRcEIKG 417 (563)
T KOG1785|consen 370 ELCKICAEND---KDVKIEPCGHLLCTSCLAAWQDSDEGQTCPFCRCEIKG 417 (563)
T ss_pred HHHHHhhccC---CCcccccccchHHHHHHHhhcccCCCCCCCceeeEecc
Confidence 4699999873 34778899999999999999753 5699999998853
No 53
>KOG0297 consensus TNF receptor-associated factor [Signal transduction mechanisms]
Probab=97.14 E-value=0.00023 Score=70.58 Aligned_cols=54 Identities=33% Similarity=0.711 Sum_probs=43.4
Q ss_pred CCcccccccccccccCCccEEeCCCCccChhhHHHHHhcCCCCCCcccccCCCCcc
Q 021283 229 GHDAECAICKENLLVGDKMQELPCKHTFHPPCLKPWLDEHNSCPICRHELQTDDHA 284 (314)
Q Consensus 229 ~~~~~C~ICLe~~~~~~~v~~LPCgH~FH~~CI~~WL~~~~tCPvCR~~l~~~d~~ 284 (314)
..+..|+||...+.. .+....|||.||..|+..|+..+..||.|+..+.....-
T Consensus 19 ~~~l~C~~C~~vl~~--p~~~~~cgh~fC~~C~~~~~~~~~~cp~~~~~~~~~~~~ 72 (391)
T KOG0297|consen 19 DENLLCPICMSVLRD--PVQTTTCGHRFCAGCLLESLSNHQKCPVCRQELTQAEEL 72 (391)
T ss_pred cccccCccccccccC--CCCCCCCCCcccccccchhhccCcCCcccccccchhhcc
Confidence 456899999999853 232357999999999999999999999999888644433
No 54
>PF11789 zf-Nse: Zinc-finger of the MIZ type in Nse subunit; PDB: 2YU4_A 3HTK_C.
Probab=97.07 E-value=0.00025 Score=51.68 Aligned_cols=41 Identities=22% Similarity=0.613 Sum_probs=28.3
Q ss_pred cccccccccccccCCccEEeCCCCccChhhHHHHHhc--CCCCCC
Q 021283 231 DAECAICKENLLVGDKMQELPCKHTFHPPCLKPWLDE--HNSCPI 273 (314)
Q Consensus 231 ~~~C~ICLe~~~~~~~v~~LPCgH~FH~~CI~~WL~~--~~tCPv 273 (314)
...|||.+..|. ++++...|+|+|-+..|..||.. ...||+
T Consensus 11 ~~~CPiT~~~~~--~PV~s~~C~H~fek~aI~~~i~~~~~~~CPv 53 (57)
T PF11789_consen 11 SLKCPITLQPFE--DPVKSKKCGHTFEKEAILQYIQRNGSKRCPV 53 (57)
T ss_dssp -SB-TTTSSB-S--SEEEESSS--EEEHHHHHHHCTTTS-EE-SC
T ss_pred ccCCCCcCChhh--CCcCcCCCCCeecHHHHHHHHHhcCCCCCCC
Confidence 568999999985 55666679999999999999943 447998
No 55
>COG5222 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=96.84 E-value=0.0011 Score=63.08 Aligned_cols=65 Identities=26% Similarity=0.491 Sum_probs=46.2
Q ss_pred ccccccccccccCCccEEeC-CCCccChhhHHHHHh-cCCCCCCccc-ccC--CCCcchhhHHHHHHHHHHHH
Q 021283 232 AECAICKENLLVGDKMQELP-CKHTFHPPCLKPWLD-EHNSCPICRH-ELQ--TDDHAYESWKEREKEAQEER 299 (314)
Q Consensus 232 ~~C~ICLe~~~~~~~v~~LP-CgH~FH~~CI~~WL~-~~~tCPvCR~-~l~--~~d~~~~~~~~r~~~~~~e~ 299 (314)
..|+.|..-+. ..+..| |+|.||..||..-|. ....||.|-. .|. .-.++++..+|-|+.-+..+
T Consensus 275 LkCplc~~Llr---np~kT~cC~~~fc~eci~~al~dsDf~CpnC~rkdvlld~l~pD~dk~~EvE~~lkkq~ 344 (427)
T COG5222 275 LKCPLCHCLLR---NPMKTPCCGHTFCDECIGTALLDSDFKCPNCSRKDVLLDGLTPDIDKKLEVEKALKKQR 344 (427)
T ss_pred ccCcchhhhhh---CcccCccccchHHHHHHhhhhhhccccCCCcccccchhhccCccHHHHHHHHHHHHHHH
Confidence 68999998873 355567 999999999987655 6679999944 443 44556666666666644333
No 56
>KOG2879 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.71 E-value=0.0012 Score=62.10 Aligned_cols=48 Identities=23% Similarity=0.468 Sum_probs=37.3
Q ss_pred CcccccccccccccCCccEEeCCCCccChhhHHHHHhc--CCCCCCcccccC
Q 021283 230 HDAECAICKENLLVGDKMQELPCKHTFHPPCLKPWLDE--HNSCPICRHELQ 279 (314)
Q Consensus 230 ~~~~C~ICLe~~~~~~~v~~LPCgH~FH~~CI~~WL~~--~~tCPvCR~~l~ 279 (314)
.+.+|++|-+.-. -+-+..+|+|+||..||..-+.. ..+||.|-.++.
T Consensus 238 ~~~~C~~Cg~~Pt--iP~~~~~C~HiyCY~Ci~ts~~~~asf~Cp~Cg~~~~ 287 (298)
T KOG2879|consen 238 SDTECPVCGEPPT--IPHVIGKCGHIYCYYCIATSRLWDASFTCPLCGENVE 287 (298)
T ss_pred CCceeeccCCCCC--CCeeeccccceeehhhhhhhhcchhhcccCccCCCCc
Confidence 4679999998842 34455679999999999886553 469999988775
No 57
>KOG4692 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.64 E-value=0.00097 Score=64.65 Aligned_cols=49 Identities=22% Similarity=0.468 Sum_probs=42.7
Q ss_pred CCcccccccccccccCCccEEeCCCCccChhhHHHHHhcCCCCCCcccccCC
Q 021283 229 GHDAECAICKENLLVGDKMQELPCKHTFHPPCLKPWLDEHNSCPICRHELQT 280 (314)
Q Consensus 229 ~~~~~C~ICLe~~~~~~~v~~LPCgH~FH~~CI~~WL~~~~tCPvCR~~l~~ 280 (314)
.++..||||.-.- -..+..||+|.-|+.||.+.|-....|=.|++.+.+
T Consensus 420 sEd~lCpICyA~p---i~Avf~PC~H~SC~~CI~qHlmN~k~CFfCktTv~~ 468 (489)
T KOG4692|consen 420 SEDNLCPICYAGP---INAVFAPCSHRSCYGCITQHLMNCKRCFFCKTTVID 468 (489)
T ss_pred cccccCcceeccc---chhhccCCCCchHHHHHHHHHhcCCeeeEecceeee
Confidence 3578999998764 457788999999999999999999999999998874
No 58
>KOG1428 consensus Inhibitor of type V adenylyl cyclases/Neuronal presynaptic protein Highwire/PAM/RPM-1 [Signal transduction mechanisms]
Probab=96.61 E-value=0.0013 Score=72.83 Aligned_cols=51 Identities=33% Similarity=0.763 Sum_probs=40.8
Q ss_pred CCcccccccccccccCCccEEeCCCCccChhhHHHHHhcC----------CCCCCcccccC
Q 021283 229 GHDAECAICKENLLVGDKMQELPCKHTFHPPCLKPWLDEH----------NSCPICRHELQ 279 (314)
Q Consensus 229 ~~~~~C~ICLe~~~~~~~v~~LPCgH~FH~~CI~~WL~~~----------~tCPvCR~~l~ 279 (314)
+.+.-|-||+.+-...-+.+.|.|+|+||..|.+..|... -+||+|+.+|.
T Consensus 3484 D~DDmCmICFTE~L~AAP~IqL~C~HiFHlqC~R~vLE~RW~GPRItF~FisCPiC~n~In 3544 (3738)
T KOG1428|consen 3484 DADDMCMICFTEALSAAPAIQLDCSHIFHLQCCRRVLENRWLGPRITFGFISCPICKNKIN 3544 (3738)
T ss_pred ccCceEEEEehhhhCCCcceecCCccchhHHHHHHHHHhcccCCeeEEeeeecccccchhh
Confidence 4567899999876666778899999999999998766531 27999998874
No 59
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=96.59 E-value=0.00067 Score=66.47 Aligned_cols=45 Identities=40% Similarity=1.002 Sum_probs=37.5
Q ss_pred cccccccccccccC-CccEEeCCCCccChhhHHHHHhcC--CCCCCcc
Q 021283 231 DAECAICKENLLVG-DKMQELPCKHTFHPPCLKPWLDEH--NSCPICR 275 (314)
Q Consensus 231 ~~~C~ICLe~~~~~-~~v~~LPCgH~FH~~CI~~WL~~~--~tCPvCR 275 (314)
...|-.|-+.+.-. +...-|||.|+||..|+...|.++ .+||.||
T Consensus 365 ~L~Cg~CGe~~Glk~e~LqALpCsHIfH~rCl~e~L~~n~~rsCP~Cr 412 (518)
T KOG1941|consen 365 ELYCGLCGESIGLKNERLQALPCSHIFHLRCLQEILENNGTRSCPNCR 412 (518)
T ss_pred hhhhhhhhhhhcCCcccccccchhHHHHHHHHHHHHHhCCCCCCccHH
Confidence 56899999987543 357779999999999999999754 4899999
No 60
>KOG2660 consensus Locus-specific chromosome binding proteins [Function unknown]
Probab=96.59 E-value=0.00051 Score=65.91 Aligned_cols=50 Identities=28% Similarity=0.685 Sum_probs=40.6
Q ss_pred cCCcccccccccccccCCccEEeCCCCccChhhHHHHHhcCCCCCCcccccC
Q 021283 228 LGHDAECAICKENLLVGDKMQELPCKHTFHPPCLKPWLDEHNSCPICRHELQ 279 (314)
Q Consensus 228 ~~~~~~C~ICLe~~~~~~~v~~LPCgH~FH~~CI~~WL~~~~tCPvCR~~l~ 279 (314)
.....+|.+|--.|.... .+.-|-|.||+.||...|....+||.|...|-
T Consensus 12 ~n~~itC~LC~GYliDAT--TI~eCLHTFCkSCivk~l~~~~~CP~C~i~ih 61 (331)
T KOG2660|consen 12 LNPHITCRLCGGYLIDAT--TITECLHTFCKSCIVKYLEESKYCPTCDIVIH 61 (331)
T ss_pred cccceehhhccceeecch--hHHHHHHHHHHHHHHHHHHHhccCCccceecc
Confidence 455679999999985422 33449999999999999999999999987664
No 61
>PF05883 Baculo_RING: Baculovirus U-box/Ring-like domain; InterPro: IPR008573 This family consists of several Baculovirus proteins of around 130 residues in length. The function of this family is unknown, but it appears to be related to the U-box and ring finger domain by profile-profile comparison.
Probab=96.57 E-value=0.00078 Score=57.19 Aligned_cols=36 Identities=25% Similarity=0.488 Sum_probs=31.2
Q ss_pred cccccccccccccCCccEEeCCC------CccChhhHHHHHh
Q 021283 231 DAECAICKENLLVGDKMQELPCK------HTFHPPCLKPWLD 266 (314)
Q Consensus 231 ~~~C~ICLe~~~~~~~v~~LPCg------H~FH~~CI~~WL~ 266 (314)
..+|.||++.+...+.++.++|+ |+||..|+.+|-+
T Consensus 26 ~~EC~IC~~~I~~~~GvV~vt~~g~lnLEkmfc~~C~~rw~~ 67 (134)
T PF05883_consen 26 TVECQICFDRIDNNDGVVYVTDGGTLNLEKMFCADCDKRWRR 67 (134)
T ss_pred CeeehhhhhhhhcCCCEEEEecCCeehHHHHHHHHHHHHHHh
Confidence 56999999999776678888887 8999999999943
No 62
>KOG0801 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.52 E-value=0.00075 Score=58.94 Aligned_cols=43 Identities=33% Similarity=0.796 Sum_probs=34.7
Q ss_pred hCCCccchhHHhhhcCCcccccccccccccCCccEEeCCCCccCh
Q 021283 214 KLPVITLTEEILDKLGHDAECAICKENLLVGDKMQELPCKHTFHP 258 (314)
Q Consensus 214 ~Lp~~~~~~~~~~~~~~~~~C~ICLe~~~~~~~v~~LPCgH~FH~ 258 (314)
.-|...|.++.+++ +.-+|.||||++..++.+.+|||-.+||+
T Consensus 162 tkPrlsYNdDVL~d--dkGECvICLEdL~~GdtIARLPCLCIYHK 204 (205)
T KOG0801|consen 162 TKPRLSYNDDVLKD--DKGECVICLEDLEAGDTIARLPCLCIYHK 204 (205)
T ss_pred cccccccccchhcc--cCCcEEEEhhhccCCCceeccceEEEeec
Confidence 34666676665443 35699999999999999999999999996
No 63
>COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only]
Probab=96.41 E-value=0.001 Score=59.90 Aligned_cols=44 Identities=23% Similarity=0.536 Sum_probs=37.9
Q ss_pred cccccccccccccCCccEEeCCCCccChhhHHHHHhcCCCCCCcccc
Q 021283 231 DAECAICKENLLVGDKMQELPCKHTFHPPCLKPWLDEHNSCPICRHE 277 (314)
Q Consensus 231 ~~~C~ICLe~~~~~~~v~~LPCgH~FH~~CI~~WL~~~~tCPvCR~~ 277 (314)
-+.|.||-.+|. .++...|||.||..|...-++....|-+|-..
T Consensus 196 PF~C~iCKkdy~---spvvt~CGH~FC~~Cai~~y~kg~~C~~Cgk~ 239 (259)
T COG5152 196 PFLCGICKKDYE---SPVVTECGHSFCSLCAIRKYQKGDECGVCGKA 239 (259)
T ss_pred ceeehhchhhcc---chhhhhcchhHHHHHHHHHhccCCcceecchh
Confidence 358999999994 47778899999999998888889999999653
No 64
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]
Probab=96.30 E-value=0.0024 Score=64.79 Aligned_cols=53 Identities=26% Similarity=0.722 Sum_probs=41.5
Q ss_pred CcccccccccccccCCccEEeCCCCccChhhHHHHHhc-----CCCCCCcccccCCCCcch
Q 021283 230 HDAECAICKENLLVGDKMQELPCKHTFHPPCLKPWLDE-----HNSCPICRHELQTDDHAY 285 (314)
Q Consensus 230 ~~~~C~ICLe~~~~~~~v~~LPCgH~FH~~CI~~WL~~-----~~tCPvCR~~l~~~d~~~ 285 (314)
...+|-+|.+.- +..+...|+|.||+.||..+... +-+||+|--.+..+....
T Consensus 535 ~~~~C~lc~d~a---ed~i~s~ChH~FCrlCi~eyv~~f~~~~nvtCP~C~i~LsiDlse~ 592 (791)
T KOG1002|consen 535 GEVECGLCHDPA---EDYIESSCHHKFCRLCIKEYVESFMENNNVTCPVCHIGLSIDLSEP 592 (791)
T ss_pred CceeecccCChh---hhhHhhhhhHHHHHHHHHHHHHhhhcccCCCCccccccccccccch
Confidence 467999999875 44666789999999999888662 348999988887665443
No 65
>KOG1571 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.22 E-value=0.0031 Score=61.25 Aligned_cols=46 Identities=24% Similarity=0.617 Sum_probs=33.3
Q ss_pred cCCcccccccccccccCCccEEeCCCCccChhhHHHHHhcCCCCCCcccccC
Q 021283 228 LGHDAECAICKENLLVGDKMQELPCKHTFHPPCLKPWLDEHNSCPICRHELQ 279 (314)
Q Consensus 228 ~~~~~~C~ICLe~~~~~~~v~~LPCgH~FH~~CI~~WL~~~~tCPvCR~~l~ 279 (314)
......|.||++... ..+-+||||+-| |..-- +.-.+||+||..|.
T Consensus 302 ~~~p~lcVVcl~e~~---~~~fvpcGh~cc--ct~cs-~~l~~CPvCR~rI~ 347 (355)
T KOG1571|consen 302 LPQPDLCVVCLDEPK---SAVFVPCGHVCC--CTLCS-KHLPQCPVCRQRIR 347 (355)
T ss_pred cCCCCceEEecCCcc---ceeeecCCcEEE--chHHH-hhCCCCchhHHHHH
Confidence 344678999999974 478899999977 54332 22345999998774
No 66
>PF12906 RINGv: RING-variant domain; PDB: 2D8S_A 1VYX_A.
Probab=96.13 E-value=0.0035 Score=43.83 Aligned_cols=40 Identities=33% Similarity=0.839 Sum_probs=27.6
Q ss_pred ccccccccccCCccEEeCCC-----CccChhhHHHHHh--cCCCCCCc
Q 021283 234 CAICKENLLVGDKMQELPCK-----HTFHPPCLKPWLD--EHNSCPIC 274 (314)
Q Consensus 234 C~ICLe~~~~~~~v~~LPCg-----H~FH~~CI~~WL~--~~~tCPvC 274 (314)
|-||++.-.... ..+.||+ ...|..|+..|+. ...+|++|
T Consensus 1 CrIC~~~~~~~~-~li~pC~C~Gs~~~vH~~CL~~W~~~~~~~~C~~C 47 (47)
T PF12906_consen 1 CRICLEGEEEDE-PLISPCRCKGSMKYVHRSCLERWIRESGNRKCEIC 47 (47)
T ss_dssp ETTTTEE-SSSS--EE-SSS-SSCCGSEECCHHHHHHHHHT-SB-TTT
T ss_pred CeEeCCcCCCCC-ceecccccCCCcchhHHHHHHHHHHhcCCCcCCCC
Confidence 789999875544 5677865 3789999999998 44579987
No 67
>KOG3970 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.10 E-value=0.011 Score=54.42 Aligned_cols=62 Identities=27% Similarity=0.567 Sum_probs=46.7
Q ss_pred cccccccccccccCCccEEeCCCCccChhhHHHHHhc--------CCCCCCcccccCCCCcchhhHHHHHH
Q 021283 231 DAECAICKENLLVGDKMQELPCKHTFHPPCLKPWLDE--------HNSCPICRHELQTDDHAYESWKEREK 293 (314)
Q Consensus 231 ~~~C~ICLe~~~~~~~v~~LPCgH~FH~~CI~~WL~~--------~~tCPvCR~~l~~~d~~~~~~~~r~~ 293 (314)
+..|..|--.+..++ .++|-|-|+||-.|++.|-.. .-.||.|-.+|.+.-...-...+.-+
T Consensus 50 ~pNC~LC~t~La~gd-t~RLvCyhlfHW~ClneraA~lPanTAPaGyqCP~Cs~eiFPp~NlvsPva~aLr 119 (299)
T KOG3970|consen 50 NPNCRLCNTPLASGD-TTRLVCYHLFHWKCLNERAANLPANTAPAGYQCPCCSQEIFPPINLVSPVAEALR 119 (299)
T ss_pred CCCCceeCCccccCc-ceeehhhhhHHHHHhhHHHhhCCCcCCCCcccCCCCCCccCCCccccchhHHHHH
Confidence 568999999998777 466779999999999999653 22699999999766554444444333
No 68
>PF14570 zf-RING_4: RING/Ubox like zinc-binding domain; PDB: 1E4U_A 1UR6_B.
Probab=96.08 E-value=0.0041 Score=43.85 Aligned_cols=44 Identities=32% Similarity=0.687 Sum_probs=22.5
Q ss_pred ccccccccccCCccEEeC--CCCccChhhHHHHHh-cCCCCCCccccc
Q 021283 234 CAICKENLLVGDKMQELP--CKHTFHPPCLKPWLD-EHNSCPICRHEL 278 (314)
Q Consensus 234 C~ICLe~~~~~~~v~~LP--CgH~FH~~CI~~WL~-~~~tCPvCR~~l 278 (314)
||+|.+.+...+ ....| |++.+|..|...-+. ..+.||-||.+.
T Consensus 1 cp~C~e~~d~~d-~~~~PC~Cgf~IC~~C~~~i~~~~~g~CPgCr~~Y 47 (48)
T PF14570_consen 1 CPLCDEELDETD-KDFYPCECGFQICRFCYHDILENEGGRCPGCREPY 47 (48)
T ss_dssp -TTTS-B--CCC-TT--SSTTS----HHHHHHHTTSS-SB-TTT--B-
T ss_pred CCCcccccccCC-CccccCcCCCcHHHHHHHHHHhccCCCCCCCCCCC
Confidence 899999994322 33444 899999999988886 578999999864
No 69
>PF10367 Vps39_2: Vacuolar sorting protein 39 domain 2; InterPro: IPR019453 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised In Vps39 this domain is involved in localisation and in mediating the interactions with Vps11 [].
Probab=96.07 E-value=0.0021 Score=51.22 Aligned_cols=33 Identities=27% Similarity=0.700 Sum_probs=28.1
Q ss_pred CCcccccccccccccCCccEEeCCCCccChhhHH
Q 021283 229 GHDAECAICKENLLVGDKMQELPCKHTFHPPCLK 262 (314)
Q Consensus 229 ~~~~~C~ICLe~~~~~~~v~~LPCgH~FH~~CI~ 262 (314)
.++..|+||-..+.. ......||||+||..|+.
T Consensus 76 ~~~~~C~vC~k~l~~-~~f~~~p~~~v~H~~C~~ 108 (109)
T PF10367_consen 76 TESTKCSVCGKPLGN-SVFVVFPCGHVVHYSCIK 108 (109)
T ss_pred CCCCCccCcCCcCCC-ceEEEeCCCeEEeccccc
Confidence 456789999999965 668889999999999975
No 70
>PF14447 Prok-RING_4: Prokaryotic RING finger family 4
Probab=95.99 E-value=0.0037 Score=45.15 Aligned_cols=48 Identities=31% Similarity=0.723 Sum_probs=35.5
Q ss_pred cccccccccccccCCccEEeCCCCccChhhHHHHHhcCCCCCCcccccCCCCc
Q 021283 231 DAECAICKENLLVGDKMQELPCKHTFHPPCLKPWLDEHNSCPICRHELQTDDH 283 (314)
Q Consensus 231 ~~~C~ICLe~~~~~~~v~~LPCgH~FH~~CI~~WL~~~~tCPvCR~~l~~~d~ 283 (314)
...|-.|... +.+-+.+||+|+.+..|..- .+.+-||+|-.++...++
T Consensus 7 ~~~~~~~~~~---~~~~~~~pCgH~I~~~~f~~--~rYngCPfC~~~~~~~~~ 54 (55)
T PF14447_consen 7 EQPCVFCGFV---GTKGTVLPCGHLICDNCFPG--ERYNGCPFCGTPFEFDDP 54 (55)
T ss_pred ceeEEEcccc---ccccccccccceeeccccCh--hhccCCCCCCCcccCCCC
Confidence 3455555544 34567799999999999765 477889999999876653
No 71
>KOG1813 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.97 E-value=0.0022 Score=60.79 Aligned_cols=44 Identities=20% Similarity=0.529 Sum_probs=38.7
Q ss_pred ccccccccccccCCccEEeCCCCccChhhHHHHHhcCCCCCCccccc
Q 021283 232 AECAICKENLLVGDKMQELPCKHTFHPPCLKPWLDEHNSCPICRHEL 278 (314)
Q Consensus 232 ~~C~ICLe~~~~~~~v~~LPCgH~FH~~CI~~WL~~~~tCPvCR~~l 278 (314)
+.|-||...|. .++...|+|.||..|...-+.....|++|-...
T Consensus 242 f~c~icr~~f~---~pVvt~c~h~fc~~ca~~~~qk~~~c~vC~~~t 285 (313)
T KOG1813|consen 242 FKCFICRKYFY---RPVVTKCGHYFCEVCALKPYQKGEKCYVCSQQT 285 (313)
T ss_pred ccccccccccc---cchhhcCCceeehhhhccccccCCcceeccccc
Confidence 46999999994 477788999999999999899989999997765
No 72
>KOG1814 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.96 E-value=0.0038 Score=61.64 Aligned_cols=47 Identities=30% Similarity=0.597 Sum_probs=38.1
Q ss_pred CcccccccccccccCCccEEeCCCCccChhhHHHHHhc--------CCCCCCccc
Q 021283 230 HDAECAICKENLLVGDKMQELPCKHTFHPPCLKPWLDE--------HNSCPICRH 276 (314)
Q Consensus 230 ~~~~C~ICLe~~~~~~~v~~LPCgH~FH~~CI~~WL~~--------~~tCPvCR~ 276 (314)
.-..|.||++..........+||+|+||+.|+..++.. .-.||-|..
T Consensus 183 slf~C~ICf~e~~G~~c~~~lpC~Hv~Ck~C~kdY~~~~i~eg~v~~l~Cp~~~C 237 (445)
T KOG1814|consen 183 SLFDCCICFEEQMGQHCFKFLPCSHVFCKSCLKDYFTIQIQEGQVSCLKCPDPKC 237 (445)
T ss_pred hcccceeeehhhcCcceeeecccchHHHHHHHHHHHHHhhhcceeeeecCCCCCC
Confidence 46899999999865567889999999999999999872 225877654
No 73
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=95.81 E-value=0.0073 Score=58.43 Aligned_cols=54 Identities=22% Similarity=0.575 Sum_probs=38.6
Q ss_pred CCcccccccccccccCCc-cEEeCCCCccChhhHHHHHh-cCCCCCCcccccCCCC
Q 021283 229 GHDAECAICKENLLVGDK-MQELPCKHTFHPPCLKPWLD-EHNSCPICRHELQTDD 282 (314)
Q Consensus 229 ~~~~~C~ICLe~~~~~~~-v~~LPCgH~FH~~CI~~WL~-~~~tCPvCR~~l~~~d 282 (314)
+++.-||.|++.+...++ -.-.|||-..|.-|....-. .++.||.||.....++
T Consensus 12 deed~cplcie~mditdknf~pc~cgy~ic~fc~~~irq~lngrcpacrr~y~den 67 (480)
T COG5175 12 DEEDYCPLCIEPMDITDKNFFPCPCGYQICQFCYNNIRQNLNGRCPACRRKYDDEN 67 (480)
T ss_pred cccccCcccccccccccCCcccCCcccHHHHHHHHHHHhhccCCChHhhhhccccc
Confidence 345569999999977654 44567998888888655322 4678999998665444
No 74
>PHA02862 5L protein; Provisional
Probab=95.77 E-value=0.0054 Score=52.68 Aligned_cols=45 Identities=20% Similarity=0.674 Sum_probs=34.4
Q ss_pred cccccccccccccCCccEEeCCC-----CccChhhHHHHHhc--CCCCCCcccccC
Q 021283 231 DAECAICKENLLVGDKMQELPCK-----HTFHPPCLKPWLDE--HNSCPICRHELQ 279 (314)
Q Consensus 231 ~~~C~ICLe~~~~~~~v~~LPCg-----H~FH~~CI~~WL~~--~~tCPvCR~~l~ 279 (314)
+..|-||++.-. +. .-||+ ...|..|+..|+.. +.+||+|+.+..
T Consensus 2 ~diCWIC~~~~~--e~--~~PC~C~GS~K~VHq~CL~~WIn~S~k~~CeLCkteY~ 53 (156)
T PHA02862 2 SDICWICNDVCD--ER--NNFCGCNEEYKVVHIKCMQLWINYSKKKECNLCKTKYN 53 (156)
T ss_pred CCEEEEecCcCC--CC--cccccccCcchhHHHHHHHHHHhcCCCcCccCCCCeEE
Confidence 358999999853 22 35664 57999999999984 448999998775
No 75
>KOG3039 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.74 E-value=0.0085 Score=55.72 Aligned_cols=54 Identities=17% Similarity=0.343 Sum_probs=45.6
Q ss_pred CcccccccccccccCCccEEe-CCCCccChhhHHHHHhcCCCCCCcccccCCCCc
Q 021283 230 HDAECAICKENLLVGDKMQEL-PCKHTFHPPCLKPWLDEHNSCPICRHELQTDDH 283 (314)
Q Consensus 230 ~~~~C~ICLe~~~~~~~v~~L-PCgH~FH~~CI~~WL~~~~tCPvCR~~l~~~d~ 283 (314)
.-+-||||.+.+...-.+..| ||||+|+..|+.+.++....||+|-.++..+|.
T Consensus 220 ~ryiCpvtrd~LtNt~~ca~Lr~sg~Vv~~ecvEklir~D~v~pv~d~plkdrdi 274 (303)
T KOG3039|consen 220 KRYICPVTRDTLTNTTPCAVLRPSGHVVTKECVEKLIRKDMVDPVTDKPLKDRDI 274 (303)
T ss_pred cceecccchhhhcCccceEEeccCCcEeeHHHHHHhccccccccCCCCcCcccce
Confidence 457899999999776655555 599999999999999999999999988876653
No 76
>KOG0826 consensus Predicted E3 ubiquitin ligase involved in peroxisome organization [Posttranslational modification, protein turnover, chaperones]
Probab=95.73 E-value=0.017 Score=55.73 Aligned_cols=48 Identities=15% Similarity=0.306 Sum_probs=37.3
Q ss_pred CCcccccccccccccCCccEEeCCCCccChhhHHHHHhcCCCCCCccccc
Q 021283 229 GHDAECAICKENLLVGDKMQELPCKHTFHPPCLKPWLDEHNSCPICRHEL 278 (314)
Q Consensus 229 ~~~~~C~ICLe~~~~~~~v~~LPCgH~FH~~CI~~WL~~~~tCPvCR~~l 278 (314)
.+...||||+..... +.+..--|-+||..||..++..++.||+--.+.
T Consensus 298 ~~~~~CpvClk~r~N--ptvl~vSGyVfCY~Ci~~Yv~~~~~CPVT~~p~ 345 (357)
T KOG0826|consen 298 PDREVCPVCLKKRQN--PTVLEVSGYVFCYPCIFSYVVNYGHCPVTGYPA 345 (357)
T ss_pred CccccChhHHhccCC--CceEEecceEEeHHHHHHHHHhcCCCCccCCcc
Confidence 346789999998643 223333699999999999999999999976554
No 77
>KOG1952 consensus Transcription factor NF-X1, contains NFX-type Zn2+-binding and R3H domains [Transcription]
Probab=95.63 E-value=0.0052 Score=65.33 Aligned_cols=50 Identities=30% Similarity=0.730 Sum_probs=37.5
Q ss_pred CCcccccccccccccCCccEEeC-CCCccChhhHHHHHhcCC-------CCCCccccc
Q 021283 229 GHDAECAICKENLLVGDKMQELP-CKHTFHPPCLKPWLDEHN-------SCPICRHEL 278 (314)
Q Consensus 229 ~~~~~C~ICLe~~~~~~~v~~LP-CgH~FH~~CI~~WL~~~~-------tCPvCR~~l 278 (314)
....+|.||++.+.....+-... |-|+||..||..|-+... .||.|+...
T Consensus 189 ~~~yeCmIC~e~I~~t~~~WSC~sCYhVFHl~CI~~WArs~ek~~~~~WrCP~Cqsv~ 246 (950)
T KOG1952|consen 189 NRKYECMICTERIKRTAPVWSCKSCYHVFHLNCIKKWARSSEKTGQDGWRCPACQSVS 246 (950)
T ss_pred cCceEEEEeeeeccccCCceecchhhhhhhHHHHHHHHHHhhhccCccccCCcccchh
Confidence 34679999999987655544433 889999999999977421 599998543
No 78
>KOG4739 consensus Uncharacterized protein involved in synaptonemal complex formation [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=95.42 E-value=0.005 Score=56.90 Aligned_cols=46 Identities=28% Similarity=0.686 Sum_probs=34.9
Q ss_pred cccccccccccCCccEEeCCCCccChhhHHHHHhcCCCCCCcccccCCC
Q 021283 233 ECAICKENLLVGDKMQELPCKHTFHPPCLKPWLDEHNSCPICRHELQTD 281 (314)
Q Consensus 233 ~C~ICLe~~~~~~~v~~LPCgH~FH~~CI~~WL~~~~tCPvCR~~l~~~ 281 (314)
.|-.|...-. ++....+.|+|+||..|...- ....||+|+.+|...
T Consensus 5 hCn~C~~~~~-~~~f~LTaC~HvfC~~C~k~~--~~~~C~lCkk~ir~i 50 (233)
T KOG4739|consen 5 HCNKCFRFPS-QDPFFLTACRHVFCEPCLKAS--SPDVCPLCKKSIRII 50 (233)
T ss_pred EeccccccCC-CCceeeeechhhhhhhhcccC--Cccccccccceeeee
Confidence 5777877664 677788889999999997653 233899999887543
No 79
>KOG4275 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.41 E-value=0.0032 Score=59.73 Aligned_cols=42 Identities=36% Similarity=0.676 Sum_probs=33.4
Q ss_pred cccccccccccccCCccEEeCCCCc-cChhhHHHHHhcCCCCCCcccccC
Q 021283 231 DAECAICKENLLVGDKMQELPCKHT-FHPPCLKPWLDEHNSCPICRHELQ 279 (314)
Q Consensus 231 ~~~C~ICLe~~~~~~~v~~LPCgH~-FH~~CI~~WL~~~~tCPvCR~~l~ 279 (314)
...|.||++.. ...+.|+|||. -|..|-... +.||+||..|.
T Consensus 300 ~~LC~ICmDaP---~DCvfLeCGHmVtCt~CGkrm----~eCPICRqyi~ 342 (350)
T KOG4275|consen 300 RRLCAICMDAP---RDCVFLECGHMVTCTKCGKRM----NECPICRQYIV 342 (350)
T ss_pred HHHHHHHhcCC---cceEEeecCcEEeehhhcccc----ccCchHHHHHH
Confidence 56899999985 56899999996 577786553 48999998763
No 80
>KOG4185 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.37 E-value=0.013 Score=55.40 Aligned_cols=48 Identities=33% Similarity=0.659 Sum_probs=39.6
Q ss_pred cccccccccccccCC---ccEEeCCCCccChhhHHHHHhc-CCCCCCccccc
Q 021283 231 DAECAICKENLLVGD---KMQELPCKHTFHPPCLKPWLDE-HNSCPICRHEL 278 (314)
Q Consensus 231 ~~~C~ICLe~~~~~~---~v~~LPCgH~FH~~CI~~WL~~-~~tCPvCR~~l 278 (314)
...|-||-++|..++ .++.|.|||.||..|+.+.+.. ...||.||.+.
T Consensus 3 ~~~c~~c~~~~s~~~~~~~p~~l~c~h~~c~~c~~~l~~~~~i~cpfcR~~~ 54 (296)
T KOG4185|consen 3 FPECEICNEDYSSEDGDHIPRVLKCGHTICQNCASKLLGNSRILCPFCRETT 54 (296)
T ss_pred CCceeecCccccccCcccCCcccccCceehHhHHHHHhcCceeeccCCCCcc
Confidence 358999999998653 3777889999999999998764 34799999985
No 81
>PHA03096 p28-like protein; Provisional
Probab=95.32 E-value=0.0077 Score=57.43 Aligned_cols=47 Identities=28% Similarity=0.489 Sum_probs=33.6
Q ss_pred ccccccccccccC----CccEEeC-CCCccChhhHHHHHhcC---C---CCCCccccc
Q 021283 232 AECAICKENLLVG----DKMQELP-CKHTFHPPCLKPWLDEH---N---SCPICRHEL 278 (314)
Q Consensus 232 ~~C~ICLe~~~~~----~~v~~LP-CgH~FH~~CI~~WL~~~---~---tCPvCR~~l 278 (314)
..|.||++..... ..-..|+ |.|.||..||..|-... . .||.|+..+
T Consensus 179 k~c~ic~e~~~~k~~~~~~fgil~~c~h~fc~~ci~~wr~~~~~~e~~~~c~~~~~~~ 236 (284)
T PHA03096 179 KICGICLENIKAKYIIKKYYGILSEIKHEFNIFCIKIWMTESLYKETEPENRRLNTVI 236 (284)
T ss_pred hhcccchhhhhhhccccccccccccCCcHHHHHHHHHHHHhhhhcccCccccchhhHH
Confidence 6899999987542 2345577 99999999999997632 2 455555544
No 82
>COG5236 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=95.23 E-value=0.01 Score=57.68 Aligned_cols=56 Identities=25% Similarity=0.581 Sum_probs=42.1
Q ss_pred CCcccccccccccccCCccEEeCCCCccChhhHHHH--HhcCCCCCCcccc----cCCCCcchhh
Q 021283 229 GHDAECAICKENLLVGDKMQELPCKHTFHPPCLKPW--LDEHNSCPICRHE----LQTDDHAYES 287 (314)
Q Consensus 229 ~~~~~C~ICLe~~~~~~~v~~LPCgH~FH~~CI~~W--L~~~~tCPvCR~~----l~~~d~~~~~ 287 (314)
.+...|-||-+.+ .....+||+|..|.-|.... |-....||+||+. +.+++++.+.
T Consensus 59 Een~~C~ICA~~~---TYs~~~PC~H~~CH~Ca~RlRALY~~K~C~~CrTE~e~V~fT~~~~~DI 120 (493)
T COG5236 59 EENMNCQICAGST---TYSARYPCGHQICHACAVRLRALYMQKGCPLCRTETEAVVFTASSPADI 120 (493)
T ss_pred cccceeEEecCCc---eEEEeccCCchHHHHHHHHHHHHHhccCCCccccccceEEEecCCCCcc
Confidence 3456899999987 56788999999999997553 4567789999974 3455555443
No 83
>PHA02825 LAP/PHD finger-like protein; Provisional
Probab=94.74 E-value=0.025 Score=49.43 Aligned_cols=47 Identities=30% Similarity=0.685 Sum_probs=34.7
Q ss_pred CcccccccccccccCCccEEeCCC--C---ccChhhHHHHHhcC--CCCCCcccccCC
Q 021283 230 HDAECAICKENLLVGDKMQELPCK--H---TFHPPCLKPWLDEH--NSCPICRHELQT 280 (314)
Q Consensus 230 ~~~~C~ICLe~~~~~~~v~~LPCg--H---~FH~~CI~~WL~~~--~tCPvCR~~l~~ 280 (314)
.+..|-||.+... . ...||. . ..|.+|+..|+..+ ..|++|+++...
T Consensus 7 ~~~~CRIC~~~~~--~--~~~PC~CkGs~k~VH~sCL~rWi~~s~~~~CeiC~~~Y~i 60 (162)
T PHA02825 7 MDKCCWICKDEYD--V--VTNYCNCKNENKIVHKECLEEWINTSKNKSCKICNGPYNI 60 (162)
T ss_pred CCCeeEecCCCCC--C--ccCCcccCCCchHHHHHHHHHHHhcCCCCcccccCCeEEE
Confidence 4679999998842 2 235754 3 56999999999854 489999987643
No 84
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.24 E-value=0.027 Score=60.41 Aligned_cols=38 Identities=32% Similarity=0.677 Sum_probs=30.7
Q ss_pred cCCcccccccccccccCCccEEeCCCCccChhhHHHHHh
Q 021283 228 LGHDAECAICKENLLVGDKMQELPCKHTFHPPCLKPWLD 266 (314)
Q Consensus 228 ~~~~~~C~ICLe~~~~~~~v~~LPCgH~FH~~CI~~WL~ 266 (314)
......|.||...+.. .+-...||||.||..||.....
T Consensus 814 ~ep~d~C~~C~~~ll~-~pF~vf~CgH~FH~~Cl~~~v~ 851 (911)
T KOG2034|consen 814 LEPQDSCDHCGRPLLI-KPFYVFPCGHCFHRDCLIRHVL 851 (911)
T ss_pred ecCccchHHhcchhhc-CcceeeeccchHHHHHHHHHHH
Confidence 3457899999998865 4677889999999999977643
No 85
>KOG2817 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=94.17 E-value=0.038 Score=54.49 Aligned_cols=50 Identities=22% Similarity=0.328 Sum_probs=41.7
Q ss_pred cCCcccccccccccccCCccEEeCCCCccChhhHHHHHhcC---CCCCCcccc
Q 021283 228 LGHDAECAICKENLLVGDKMQELPCKHTFHPPCLKPWLDEH---NSCPICRHE 277 (314)
Q Consensus 228 ~~~~~~C~ICLe~~~~~~~v~~LPCgH~FH~~CI~~WL~~~---~tCPvCR~~ 277 (314)
....+.|||=.+.-....+++.|.|||+..+.-+.+..+.. ..||+|-..
T Consensus 331 fHSvF~CPVlKeqtsdeNPPm~L~CGHVISkdAlnrLS~ng~~sfKCPYCP~e 383 (394)
T KOG2817|consen 331 FHSVFICPVLKEQTSDENPPMMLICGHVISKDALNRLSKNGSQSFKCPYCPVE 383 (394)
T ss_pred ccceeecccchhhccCCCCCeeeeccceecHHHHHHHhhCCCeeeeCCCCCcc
Confidence 45678999998888888899999999999999999976643 369999543
No 86
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.03 E-value=0.029 Score=59.95 Aligned_cols=44 Identities=32% Similarity=0.807 Sum_probs=35.5
Q ss_pred cccccccccccccCCccEEeCCCCccChhhHHHHHhcCCCCCCcccccC
Q 021283 231 DAECAICKENLLVGDKMQELPCKHTFHPPCLKPWLDEHNSCPICRHELQ 279 (314)
Q Consensus 231 ~~~C~ICLe~~~~~~~v~~LPCgH~FH~~CI~~WL~~~~tCPvCR~~l~ 279 (314)
...|.+|--.+. -+.+..-|||.||..|+. .....||.|+.++.
T Consensus 840 ~skCs~C~~~Ld--lP~VhF~CgHsyHqhC~e---~~~~~CP~C~~e~~ 883 (933)
T KOG2114|consen 840 VSKCSACEGTLD--LPFVHFLCGHSYHQHCLE---DKEDKCPKCLPELR 883 (933)
T ss_pred eeeecccCCccc--cceeeeecccHHHHHhhc---cCcccCCccchhhh
Confidence 468999988874 357778899999999998 45668999998543
No 87
>KOG3268 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=94.01 E-value=0.029 Score=49.96 Aligned_cols=50 Identities=30% Similarity=0.781 Sum_probs=35.5
Q ss_pred cccccccccccccC----CccEEeCCCCccChhhHHHHHhc-----C------CCCCCcccccCC
Q 021283 231 DAECAICKENLLVG----DKMQELPCKHTFHPPCLKPWLDE-----H------NSCPICRHELQT 280 (314)
Q Consensus 231 ~~~C~ICLe~~~~~----~~v~~LPCgH~FH~~CI~~WL~~-----~------~tCPvCR~~l~~ 280 (314)
...|-||...-..| ...-...||..||.-|+..||+. + +.||+|-.++.-
T Consensus 165 ~~~cgicyayqldGTipDqtCdN~qCgkpFHqiCL~dWLRgilTsRQSFdiiFGeCPYCS~Pial 229 (234)
T KOG3268|consen 165 LGACGICYAYQLDGTIPDQTCDNIQCGKPFHQICLTDWLRGILTSRQSFDIIFGECPYCSDPIAL 229 (234)
T ss_pred hhcccceeeeecCCccccccccccccCCcHHHHHHHHHHHHHhhccceeeeeeccCCCCCCccee
Confidence 45788887553332 23444569999999999999983 1 259999888753
No 88
>KOG1940 consensus Zn-finger protein [General function prediction only]
Probab=93.95 E-value=0.031 Score=53.08 Aligned_cols=61 Identities=31% Similarity=0.624 Sum_probs=45.0
Q ss_pred cccccccccccccCC-ccEEeCCCCccChhhHHHHHhcCCCCCCcccccCCCCcchhhHHHHHH
Q 021283 231 DAECAICKENLLVGD-KMQELPCKHTFHPPCLKPWLDEHNSCPICRHELQTDDHAYESWKEREK 293 (314)
Q Consensus 231 ~~~C~ICLe~~~~~~-~v~~LPCgH~FH~~CI~~WL~~~~tCPvCR~~l~~~d~~~~~~~~r~~ 293 (314)
...||||.+.+.... .+..++|||..|..|.......+-+||+|.. +.+-..+-...+++-
T Consensus 158 ~~ncPic~e~l~~s~~~~~~~~CgH~~h~~cf~e~~~~~y~CP~C~~--~~d~~~~~~~~d~~l 219 (276)
T KOG1940|consen 158 EFNCPICKEYLFLSFEDAGVLKCGHYMHSRCFEEMICEGYTCPICSK--PGDMSHYFRKLDKEL 219 (276)
T ss_pred cCCCchhHHHhccccccCCccCcccchHHHHHHHHhccCCCCCcccc--hHHHHHHHHHHHHHH
Confidence 446999999876543 4778899999999999998777789999987 344444444444443
No 89
>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=93.94 E-value=0.022 Score=60.38 Aligned_cols=44 Identities=36% Similarity=0.819 Sum_probs=36.9
Q ss_pred ccccccccccccCCccEEeCCCCccChhhHHHHHhc--CCCCCCcccccC
Q 021283 232 AECAICKENLLVGDKMQELPCKHTFHPPCLKPWLDE--HNSCPICRHELQ 279 (314)
Q Consensus 232 ~~C~ICLe~~~~~~~v~~LPCgH~FH~~CI~~WL~~--~~tCPvCR~~l~ 279 (314)
..|.||++ . +.++..+|+|.||..|+..-+.. ...||+||..+.
T Consensus 455 ~~c~ic~~-~---~~~~it~c~h~~c~~c~~~~i~~~~~~~~~~cr~~l~ 500 (674)
T KOG1001|consen 455 HWCHICCD-L---DSFFITRCGHDFCVECLKKSIQQSENAPCPLCRNVLK 500 (674)
T ss_pred cccccccc-c---ccceeecccchHHHHHHHhccccccCCCCcHHHHHHH
Confidence 79999999 2 67888999999999999988764 236999998764
No 90
>PF04641 Rtf2: Rtf2 RING-finger
Probab=93.84 E-value=0.059 Score=50.57 Aligned_cols=52 Identities=19% Similarity=0.448 Sum_probs=39.9
Q ss_pred CCcccccccccccccCCc-cEEeCCCCccChhhHHHHHhcCCCCCCcccccCCC
Q 021283 229 GHDAECAICKENLLVGDK-MQELPCKHTFHPPCLKPWLDEHNSCPICRHELQTD 281 (314)
Q Consensus 229 ~~~~~C~ICLe~~~~~~~-v~~LPCgH~FH~~CI~~WL~~~~tCPvCR~~l~~~ 281 (314)
...+.|||+...|..... +...||||+|...||... .....||+|-.++...
T Consensus 111 ~~~~~CPvt~~~~~~~~~fv~l~~cG~V~s~~alke~-k~~~~Cp~c~~~f~~~ 163 (260)
T PF04641_consen 111 EGRFICPVTGKEFNGKHKFVYLRPCGCVFSEKALKEL-KKSKKCPVCGKPFTEE 163 (260)
T ss_pred CceeECCCCCcccCCceeEEEEcCCCCEeeHHHHHhh-cccccccccCCccccC
Confidence 446789999999954444 555589999999999996 3456899998886533
No 91
>KOG0827 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=93.75 E-value=0.0052 Score=60.29 Aligned_cols=50 Identities=34% Similarity=0.659 Sum_probs=43.1
Q ss_pred cccccccccccccC-CccEEeCCCCccChhhHHHHHhcCCCCCCcccccCC
Q 021283 231 DAECAICKENLLVG-DKMQELPCKHTFHPPCLKPWLDEHNSCPICRHELQT 280 (314)
Q Consensus 231 ~~~C~ICLe~~~~~-~~v~~LPCgH~FH~~CI~~WL~~~~tCPvCR~~l~~ 280 (314)
...|+||.+.++.. +++-.+-|||.+|..||.+||.....||.|+..|+.
T Consensus 196 v~sl~I~~~slK~~y~k~~~~~~g~~~~~~kL~k~L~~~~kl~~~~rel~~ 246 (465)
T KOG0827|consen 196 VGSLSICFESLKQNYDKISAIVCGHIYHHGKLSKWLATKRKLPSCRRELPK 246 (465)
T ss_pred HhhhHhhHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHhHHHHhhhhh
Confidence 45899999998765 456667799999999999999999999999998864
No 92
>PF07800 DUF1644: Protein of unknown function (DUF1644); InterPro: IPR012866 This family consists of sequences found in a number of hypothetical plant proteins of unknown function. The region of interest contains nine highly conserved cysteine residues and is approximately 160 amino acids in length, which probably represent a zinc-binding domain.
Probab=93.59 E-value=0.066 Score=46.77 Aligned_cols=33 Identities=30% Similarity=0.650 Sum_probs=21.3
Q ss_pred cccccccccccccCCccEEeC------------CCCc-cChhhHHHHHh
Q 021283 231 DAECAICKENLLVGDKMQELP------------CKHT-FHPPCLKPWLD 266 (314)
Q Consensus 231 ~~~C~ICLe~~~~~~~v~~LP------------CgH~-FH~~CI~~WL~ 266 (314)
+..|||||+.- -..+.|- |+.. -|..|++++-+
T Consensus 2 d~~CpICme~P---HNAVLLlCSS~~kgcRpymc~Ts~rhSNCLdqfkk 47 (162)
T PF07800_consen 2 DVTCPICMEHP---HNAVLLLCSSHEKGCRPYMCDTSYRHSNCLDQFKK 47 (162)
T ss_pred CccCceeccCC---CceEEEEeccccCCccccccCCccchhHHHHHHHH
Confidence 57899999974 2233332 4432 47789998743
No 93
>PF08746 zf-RING-like: RING-like domain; InterPro: IPR014857 This is a zinc finger domain that is related to the C3HC4 RING finger domain (IPR001841 from INTERPRO). ; PDB: 3NW0_A 2CT0_A.
Probab=93.51 E-value=0.035 Score=38.09 Aligned_cols=41 Identities=29% Similarity=0.822 Sum_probs=23.3
Q ss_pred ccccccccccCCccEEeCCCCccChhhHHHHHhcCC--CCCCc
Q 021283 234 CAICKENLLVGDKMQELPCKHTFHPPCLKPWLDEHN--SCPIC 274 (314)
Q Consensus 234 C~ICLe~~~~~~~v~~LPCgH~FH~~CI~~WL~~~~--tCPvC 274 (314)
|.+|.+....|.....-.|+=.+|..|+..+++... .||.|
T Consensus 1 C~~C~~iv~~G~~C~~~~C~~r~H~~C~~~y~r~~~~~~CP~C 43 (43)
T PF08746_consen 1 CEACKEIVTQGQRCSNRDCNVRLHDDCFKKYFRHRSNPKCPNC 43 (43)
T ss_dssp -TTT-SB-SSSEE-SS--S--EE-HHHHHHHTTT-SS-B-TTT
T ss_pred CcccchhHeeeccCCCCccCchHHHHHHHHHHhcCCCCCCcCC
Confidence 677887775554433334888999999999998655 79988
No 94
>KOG1100 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=91.92 E-value=0.23 Score=45.31 Aligned_cols=41 Identities=32% Similarity=0.720 Sum_probs=31.1
Q ss_pred ccccccccccCCccEEeCCCCc-cChhhHHHHHhcCCCCCCcccccCCC
Q 021283 234 CAICKENLLVGDKMQELPCKHT-FHPPCLKPWLDEHNSCPICRHELQTD 281 (314)
Q Consensus 234 C~ICLe~~~~~~~v~~LPCgH~-FH~~CI~~WL~~~~tCPvCR~~l~~~ 281 (314)
|-+|.+.= -.+..+||.|+ +|..|-.. -..||+|+.+....
T Consensus 161 Cr~C~~~~---~~VlllPCrHl~lC~~C~~~----~~~CPiC~~~~~s~ 202 (207)
T KOG1100|consen 161 CRKCGERE---ATVLLLPCRHLCLCGICDES----LRICPICRSPKTSS 202 (207)
T ss_pred ceecCcCC---ceEEeecccceEeccccccc----CccCCCCcChhhce
Confidence 88888873 45889999985 88889654 34699999876543
No 95
>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair]
Probab=91.91 E-value=0.066 Score=59.53 Aligned_cols=58 Identities=24% Similarity=0.419 Sum_probs=45.9
Q ss_pred CCcccccccccccccCCccEEeCCCCccChhhHHHHHhcCCCCCCcccccCCCCcchhhH
Q 021283 229 GHDAECAICKENLLVGDKMQELPCKHTFHPPCLKPWLDEHNSCPICRHELQTDDHAYESW 288 (314)
Q Consensus 229 ~~~~~C~ICLe~~~~~~~v~~LPCgH~FH~~CI~~WL~~~~tCPvCR~~l~~~d~~~~~~ 288 (314)
.....|.||++.+. ....+..|||.+|..|+..|+..+..||+|+....+...+.+..
T Consensus 1151 ~~~~~c~ic~dil~--~~~~I~~cgh~~c~~c~~~~l~~~s~~~~~ksi~~dfg~kI~~v 1208 (1394)
T KOG0298|consen 1151 SGHFVCEICLDILR--NQGGIAGCGHEPCCRCDELWLYASSRCPICKSIKGDFGTKIDSV 1208 (1394)
T ss_pred hcccchHHHHHHHH--hcCCeeeechhHhhhHHHHHHHHhccCcchhhhhhhhccCchhH
Confidence 44569999999984 23456679999999999999999999999997665555555544
No 96
>PF14446 Prok-RING_1: Prokaryotic RING finger family 1
Probab=91.61 E-value=0.17 Score=36.58 Aligned_cols=33 Identities=24% Similarity=0.744 Sum_probs=29.1
Q ss_pred cccccccccccccCCccEEeC-CCCccChhhHHH
Q 021283 231 DAECAICKENLLVGDKMQELP-CKHTFHPPCLKP 263 (314)
Q Consensus 231 ~~~C~ICLe~~~~~~~v~~LP-CgH~FH~~CI~~ 263 (314)
...|++|-+.|..++.+++-| |+-.+|+.|...
T Consensus 5 ~~~C~~Cg~~~~~~dDiVvCp~CgapyHR~C~~~ 38 (54)
T PF14446_consen 5 GCKCPVCGKKFKDGDDIVVCPECGAPYHRDCWEK 38 (54)
T ss_pred CccChhhCCcccCCCCEEECCCCCCcccHHHHhh
Confidence 458999999998888889998 999999999654
No 97
>KOG3002 consensus Zn finger protein [General function prediction only]
Probab=91.19 E-value=0.15 Score=49.06 Aligned_cols=43 Identities=26% Similarity=0.597 Sum_probs=34.1
Q ss_pred CcccccccccccccCCccEEeCC--CCccChhhHHHHHhcCCCCCCcccccC
Q 021283 230 HDAECAICKENLLVGDKMQELPC--KHTFHPPCLKPWLDEHNSCPICRHELQ 279 (314)
Q Consensus 230 ~~~~C~ICLe~~~~~~~v~~LPC--gH~FH~~CI~~WL~~~~tCPvCR~~l~ 279 (314)
+-.+||||.+.+.. -++.| ||+-|..|-.+ ....||.||.++.
T Consensus 47 ~lleCPvC~~~l~~----Pi~QC~nGHlaCssC~~~---~~~~CP~Cr~~~g 91 (299)
T KOG3002|consen 47 DLLDCPVCFNPLSP----PIFQCDNGHLACSSCRTK---VSNKCPTCRLPIG 91 (299)
T ss_pred hhccCchhhccCcc----cceecCCCcEehhhhhhh---hcccCCccccccc
Confidence 46799999999853 23446 79999999764 5678999999997
No 98
>KOG3039 consensus Uncharacterized conserved protein [Function unknown]
Probab=90.45 E-value=0.082 Score=49.33 Aligned_cols=72 Identities=18% Similarity=0.236 Sum_probs=43.6
Q ss_pred cccccccccccccCCccEEeCCCCccChhhHHHHHhcCCCCCCcccccCCCCcchhhHHHHHHHHHHHHhhhccccCCCc
Q 021283 231 DAECAICKENLLVGDKMQELPCKHTFHPPCLKPWLDEHNSCPICRHELQTDDHAYESWKEREKEAQEERKGAANAVRGGE 310 (314)
Q Consensus 231 ~~~C~ICLe~~~~~~~v~~LPCgH~FH~~CI~~WL~~~~tCPvCR~~l~~~d~~~~~~~~r~~~~~~e~~~~~~~~~~~~ 310 (314)
-..|+.||..+ ..+++.|=||+|++.||..++--+. ..+...-..|+..+++++-+++++.---.+.|..|
T Consensus 43 FdcCsLtLqPc---~dPvit~~GylfdrEaILe~ilaqK------ke~arrlkayekqrr~eed~e~qra~~q~~~~~~e 113 (303)
T KOG3039|consen 43 FDCCSLTLQPC---RDPVITPDGYLFDREAILEYILAQK------KEIARRLKAYEKQRRAEEDKEEQRAMSQKARRLDE 113 (303)
T ss_pred cceeeeecccc---cCCccCCCCeeeeHHHHHHHHHHHH------HHHHHHHHHHHHHHHhhhhHHHHHHHhhhHHHHHH
Confidence 45799999998 5588899999999999999764222 22333333444444333323333332345566656
Q ss_pred c
Q 021283 311 Y 311 (314)
Q Consensus 311 ~ 311 (314)
|
T Consensus 114 F 114 (303)
T KOG3039|consen 114 F 114 (303)
T ss_pred H
Confidence 6
No 99
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=90.01 E-value=0.18 Score=53.55 Aligned_cols=41 Identities=29% Similarity=0.685 Sum_probs=31.3
Q ss_pred ccccccccccccCCccEEeCCCCccChhhHHHHHhcCCCCCC
Q 021283 232 AECAICKENLLVGDKMQELPCKHTFHPPCLKPWLDEHNSCPI 273 (314)
Q Consensus 232 ~~C~ICLe~~~~~~~v~~LPCgH~FH~~CI~~WL~~~~tCPv 273 (314)
..|.||.-.+ .+...+...|+|+.|..|...|++....||-
T Consensus 1029 ~~C~~C~l~V-~gss~~Cg~C~Hv~H~sc~~eWf~~gd~Cps 1069 (1081)
T KOG0309|consen 1029 FQCAICHLAV-RGSSNFCGTCGHVGHTSCMMEWFRTGDVCPS 1069 (1081)
T ss_pred eeeeeEeeEe-eccchhhccccccccHHHHHHHHhcCCcCCC
Confidence 4566665554 2344555679999999999999999999984
No 100
>PF10272 Tmpp129: Putative transmembrane protein precursor; InterPro: IPR018801 This entry consists of proteins conserved from worms to humans. They are purported to be transmembrane protein-precursors but their function is unknown.
Probab=89.92 E-value=0.16 Score=49.97 Aligned_cols=31 Identities=26% Similarity=0.803 Sum_probs=24.1
Q ss_pred CCCccChhhHHHHHhc-------------CCCCCCcccccCCCC
Q 021283 252 CKHTFHPPCLKPWLDE-------------HNSCPICRHELQTDD 282 (314)
Q Consensus 252 CgH~FH~~CI~~WL~~-------------~~tCPvCR~~l~~~d 282 (314)
|.-++|.+|+-+|+.. +.+||+||+.+.--|
T Consensus 311 CRPmWC~~Cm~kwFasrQd~~~~~~Wl~~~~~CPtCRa~FCilD 354 (358)
T PF10272_consen 311 CRPMWCLECMGKWFASRQDQQHPETWLSGKCPCPTCRAKFCILD 354 (358)
T ss_pred ccchHHHHHHHHHhhhcCCCCChhhhhcCCCCCCCCcccceeee
Confidence 5677889999998763 337999999987655
No 101
>KOG2932 consensus E3 ubiquitin ligase involved in ubiquitination of E-cadherin complex [Posttranslational modification, protein turnover, chaperones]
Probab=89.48 E-value=0.14 Score=49.18 Aligned_cols=44 Identities=27% Similarity=0.663 Sum_probs=30.9
Q ss_pred cccccccccccccCCccEEeCCCCccChhhHHHHHhcCCCCCCccccc
Q 021283 231 DAECAICKENLLVGDKMQELPCKHTFHPPCLKPWLDEHNSCPICRHEL 278 (314)
Q Consensus 231 ~~~C~ICLe~~~~~~~v~~LPCgH~FH~~CI~~WL~~~~tCPvCR~~l 278 (314)
.-.|.-|--.+. -.-+..||.|+||.+|... .....||.|-.+|
T Consensus 90 VHfCd~Cd~PI~--IYGRmIPCkHvFCl~CAr~--~~dK~Cp~C~d~V 133 (389)
T KOG2932|consen 90 VHFCDRCDFPIA--IYGRMIPCKHVFCLECARS--DSDKICPLCDDRV 133 (389)
T ss_pred eEeecccCCcce--eeecccccchhhhhhhhhc--CccccCcCcccHH
Confidence 446766755543 3456689999999999765 3456899996555
No 102
>KOG3800 consensus Predicted E3 ubiquitin ligase containing RING finger, subunit of transcription/repair factor TFIIH and CDK-activating kinase assembly factor [Posttranslational modification, protein turnover, chaperones]
Probab=88.98 E-value=0.49 Score=45.15 Aligned_cols=49 Identities=27% Similarity=0.570 Sum_probs=35.1
Q ss_pred ccccccccc-ccCC-ccEEeCCCCccChhhHHHHHhc-CCCCCCcccccCCC
Q 021283 233 ECAICKENL-LVGD-KMQELPCKHTFHPPCLKPWLDE-HNSCPICRHELQTD 281 (314)
Q Consensus 233 ~C~ICLe~~-~~~~-~v~~LPCgH~FH~~CI~~WL~~-~~tCPvCR~~l~~~ 281 (314)
.||+|.... ...+ ...+-||+|..|.+|++..+.. ...||.|-..+...
T Consensus 2 ~Cp~CKt~~Y~np~lk~~in~C~H~lCEsCvd~iF~~g~~~CpeC~~iLRk~ 53 (300)
T KOG3800|consen 2 ACPKCKTDRYLNPDLKLMINECGHRLCESCVDRIFSLGPAQCPECMVILRKN 53 (300)
T ss_pred CCcccccceecCccceeeeccccchHHHHHHHHHHhcCCCCCCcccchhhhc
Confidence 599997542 2222 3344479999999999998874 56899997766543
No 103
>PF03854 zf-P11: P-11 zinc finger; InterPro: IPR003224 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The RING-finger is a specialised type of Zn-finger of 40 to 60 residues that binds two atoms of zinc, and is probably involved in mediating protein-protein interactions [, , ]. There are two different variants, the C3HC4-type and a C3H2C3-type, which is clearly related despite the different cysteine/histidine pattern. The latter type is sometimes referred to as 'RING-H2 finger'. The RING domain is a protein interaction domain which has been implicated in a range of diverse biological processes. Several 3D-structures for RING-fingers are known [, ]. The 3D structure of the zinc ligation system is unique to the RING domain and is referred to as the 'cross-brace' motif. The spacing of the cysteines in such a domain is: C-x(2)-C-x(9 to 39)-C-x(1 to 3)-H-x(2 to 3)-C-x(2)-C-x(4 to 48)-C-x(2)-C Metal ligand pairs one and three co-ordinate to bind one zinc ion, whilst pairs two and four bind the second. This entry represents RING finger protein Z, a small polypeptide found in some negative-strand RNA viruses including Lassa fever virus, which plays a crucial role in virion assembly and budding. RING finger Z has been shown to interact with several host proteins, including promyelocytic leukemia protein and the eukaryotic translation initiation factor 4E [, ]. It is sufficient in the absence of any other viral proteins to release virus-like particles from the infected cell []. This protein is also responsible for arenavirus superinfection exclusion; expression of this protein in a host cell strongly and specifically inhibits areanavirus transcription and replication []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003723 RNA binding, 0008270 zinc ion binding; PDB: 2KO5_A.
Probab=88.22 E-value=0.18 Score=35.52 Aligned_cols=33 Identities=33% Similarity=0.728 Sum_probs=23.4
Q ss_pred EeCCC-CccChhhHHHHHhcCCCCCCcccccCCC
Q 021283 249 ELPCK-HTFHPPCLKPWLDEHNSCPICRHELQTD 281 (314)
Q Consensus 249 ~LPCg-H~FH~~CI~~WL~~~~tCPvCR~~l~~~ 281 (314)
...|. |..|..|+.--|..+..||+|..++++.
T Consensus 15 Li~C~dHYLCl~CLt~ml~~s~~C~iC~~~LPtk 48 (50)
T PF03854_consen 15 LIKCSDHYLCLNCLTLMLSRSDRCPICGKPLPTK 48 (50)
T ss_dssp EEE-SS-EEEHHHHHHT-SSSSEETTTTEE----
T ss_pred eeeecchhHHHHHHHHHhccccCCCcccCcCccc
Confidence 34575 9999999999999999999999999864
No 104
>KOG3899 consensus Uncharacterized conserved protein [Function unknown]
Probab=88.17 E-value=0.2 Score=47.89 Aligned_cols=34 Identities=24% Similarity=0.590 Sum_probs=26.6
Q ss_pred CCCccChhhHHHHHh-------------cCCCCCCcccccCCCCcch
Q 021283 252 CKHTFHPPCLKPWLD-------------EHNSCPICRHELQTDDHAY 285 (314)
Q Consensus 252 CgH~FH~~CI~~WL~-------------~~~tCPvCR~~l~~~d~~~ 285 (314)
|.-++|.+|+-+|+. ++.+||+||..+...|-.|
T Consensus 325 crp~wc~~cla~~f~~rq~~v~r~~~~~~~~~cp~cr~~fci~dv~~ 371 (381)
T KOG3899|consen 325 CRPLWCRSCLAQIFIGRQDNVYRYEYHRGSAQCPTCRKNFCIRDVHC 371 (381)
T ss_pred cccHHHHHHHHHHHhhcccchhHHHHHhcCCCCcchhhceEEeeeeE
Confidence 677899999998865 3448999999987666544
No 105
>KOG4362 consensus Transcriptional regulator BRCA1 [Replication, recombination and repair; Transcription]
Probab=87.60 E-value=0.14 Score=54.01 Aligned_cols=47 Identities=28% Similarity=0.709 Sum_probs=37.4
Q ss_pred CcccccccccccccCCccEEeCCCCccChhhHHHHHhc---CCCCCCcccccC
Q 021283 230 HDAECAICKENLLVGDKMQELPCKHTFHPPCLKPWLDE---HNSCPICRHELQ 279 (314)
Q Consensus 230 ~~~~C~ICLe~~~~~~~v~~LPCgH~FH~~CI~~WL~~---~~tCPvCR~~l~ 279 (314)
...+|+||+..+... ..+.|.|.|+..|+..-|.. ...||+|+..+.
T Consensus 20 k~lEc~ic~~~~~~p---~~~kc~~~~l~~~~n~~f~~~~~~~~~~lc~~~~e 69 (684)
T KOG4362|consen 20 KILECPICLEHVKEP---SLLKCDHIFLKFCLNKLFESKKGPKQCALCKSDIE 69 (684)
T ss_pred hhccCCceeEEeecc---chhhhhHHHHhhhhhceeeccCccccchhhhhhhh
Confidence 467999999998653 66789999999998876654 347999987664
No 106
>PF05290 Baculo_IE-1: Baculovirus immediate-early protein (IE-0); InterPro: IPR007954 This entry contains the Baculovirus immediate-early protein IE-0.
Probab=87.49 E-value=0.4 Score=40.84 Aligned_cols=51 Identities=24% Similarity=0.523 Sum_probs=37.4
Q ss_pred CcccccccccccccCCccEEeC---CCCccChhhHHHHHh---cCCCCCCcccccCCCC
Q 021283 230 HDAECAICKENLLVGDKMQELP---CKHTFHPPCLKPWLD---EHNSCPICRHELQTDD 282 (314)
Q Consensus 230 ~~~~C~ICLe~~~~~~~v~~LP---CgH~FH~~CI~~WL~---~~~tCPvCR~~l~~~d 282 (314)
...+|.||.|.-.+ .-..-| ||-..|..|--..++ .++.||+|++.+.+..
T Consensus 79 ~lYeCnIC~etS~e--e~FLKPneCCgY~iCn~Cya~LWK~~~~ypvCPvCkTSFKss~ 135 (140)
T PF05290_consen 79 KLYECNICKETSAE--ERFLKPNECCGYSICNACYANLWKFCNLYPVCPVCKTSFKSSS 135 (140)
T ss_pred CceeccCcccccch--hhcCCcccccchHHHHHHHHHHHHHcccCCCCCcccccccccc
Confidence 36799999998543 222233 899999998766544 5779999999987654
No 107
>KOG1609 consensus Protein involved in mRNA turnover and stability [RNA processing and modification]
Probab=87.39 E-value=0.2 Score=47.28 Aligned_cols=51 Identities=25% Similarity=0.623 Sum_probs=38.2
Q ss_pred cccccccccccccCCc-cEEeCCC-----CccChhhHHHHHh--cCCCCCCcccccCCC
Q 021283 231 DAECAICKENLLVGDK-MQELPCK-----HTFHPPCLKPWLD--EHNSCPICRHELQTD 281 (314)
Q Consensus 231 ~~~C~ICLe~~~~~~~-v~~LPCg-----H~FH~~CI~~WL~--~~~tCPvCR~~l~~~ 281 (314)
...|-||......... ....||. +..|..|+..|+. ....|.+|.......
T Consensus 78 ~~~cRIc~~~~~~~~~~~l~~pC~C~g~l~~vH~~cl~~W~~~~~~~~CeiC~~~~~~~ 136 (323)
T KOG1609|consen 78 GPICRICHEEDEESNGLLLISPCSCKGSLAYVHRSCLEKWFSIKGNITCEICKSFFINV 136 (323)
T ss_pred CCcEEEEecccccccccccccCccccCcHHHHHHHHHHhhhccccCeeeecccccceec
Confidence 4689999997654321 5667765 6689999999998 556899998866544
No 108
>KOG3053 consensus Uncharacterized conserved protein [Function unknown]
Probab=86.59 E-value=0.26 Score=46.23 Aligned_cols=49 Identities=33% Similarity=0.688 Sum_probs=34.6
Q ss_pred CcccccccccccccCCcc-EEeCCC-----CccChhhHHHHHhcCC--------CCCCccccc
Q 021283 230 HDAECAICKENLLVGDKM-QELPCK-----HTFHPPCLKPWLDEHN--------SCPICRHEL 278 (314)
Q Consensus 230 ~~~~C~ICLe~~~~~~~v-~~LPCg-----H~FH~~CI~~WL~~~~--------tCPvCR~~l 278 (314)
.+.-|=||+..=+++... -.-||. |..|..|+..|+..+. +||-|+++.
T Consensus 19 ~eR~CWiCF~TdeDn~~a~WV~PCrCRGt~KWVHqsCL~rWiDEK~~~n~~q~V~C~QCqTEY 81 (293)
T KOG3053|consen 19 LERCCWICFATDEDNRLAAWVHPCRCRGTTKWVHQSCLSRWIDEKQRGNPLQTVSCPQCQTEY 81 (293)
T ss_pred cceeEEEEeccCcccchhhhcccccccCccHHHHHHHHHHHHhHHhcCCCCceeechhhcchh
Confidence 356899999885433221 234553 8899999999997432 699999865
No 109
>KOG1812 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=86.36 E-value=0.28 Score=48.79 Aligned_cols=37 Identities=30% Similarity=0.594 Sum_probs=27.2
Q ss_pred cccccccccccccC-CccEEeCCCCccChhhHHHHHhc
Q 021283 231 DAECAICKENLLVG-DKMQELPCKHTFHPPCLKPWLDE 267 (314)
Q Consensus 231 ~~~C~ICLe~~~~~-~~v~~LPCgH~FH~~CI~~WL~~ 267 (314)
..+|.||....... +......|+|.||..|+.+.+..
T Consensus 146 ~~~C~iC~~e~~~~~~~f~~~~C~H~fC~~C~k~~iev 183 (384)
T KOG1812|consen 146 KEECGICFVEDPEAEDMFSVLKCGHRFCKDCVKQHIEV 183 (384)
T ss_pred cccCccCccccccHhhhHHHhcccchhhhHHhHHHhhh
Confidence 56999999444333 33334559999999999998873
No 110
>COG5220 TFB3 Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit TFB3 [Cell division and chromosome partitioning / Transcription / DNA replication, recombination, and repair]
Probab=85.92 E-value=0.27 Score=45.76 Aligned_cols=47 Identities=30% Similarity=0.721 Sum_probs=34.4
Q ss_pred Ccccccccccc-cccCC-ccEEeC-CCCccChhhHHHHHhc-CCCCC--Cccc
Q 021283 230 HDAECAICKEN-LLVGD-KMQELP-CKHTFHPPCLKPWLDE-HNSCP--ICRH 276 (314)
Q Consensus 230 ~~~~C~ICLe~-~~~~~-~v~~LP-CgH~FH~~CI~~WL~~-~~tCP--vCR~ 276 (314)
.+..||||..+ |...+ +..+-| |-|.+|.+|++..+.. ...|| -|-.
T Consensus 9 ~d~~CPvCksDrYLnPdik~linPECyHrmCESCvdRIFs~GpAqCP~~gC~k 61 (314)
T COG5220 9 EDRRCPVCKSDRYLNPDIKILINPECYHRMCESCVDRIFSRGPAQCPYKGCGK 61 (314)
T ss_pred hcccCCccccccccCCCeEEEECHHHHHHHHHHHHHHHhcCCCCCCCCccHHH
Confidence 35689999765 33333 445557 9999999999999875 55899 6754
No 111
>KOG3161 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=85.90 E-value=0.3 Score=51.07 Aligned_cols=43 Identities=28% Similarity=0.577 Sum_probs=33.2
Q ss_pred cccccccccccccCC-ccEEeCCCCccChhhHHHHHhcCCCCCCccc
Q 021283 231 DAECAICKENLLVGD-KMQELPCKHTFHPPCLKPWLDEHNSCPICRH 276 (314)
Q Consensus 231 ~~~C~ICLe~~~~~~-~v~~LPCgH~FH~~CI~~WL~~~~tCPvCR~ 276 (314)
...|+||++.|.... .++.+-|||..|..|+..-. +.+|| |++
T Consensus 11 ~l~c~ic~n~f~~~~~~Pvsl~cghtic~~c~~~ly--n~scp-~~~ 54 (861)
T KOG3161|consen 11 LLLCDICLNLFVVQRLEPVSLQCGHTICGHCVQLLY--NASCP-TKR 54 (861)
T ss_pred HhhchHHHHHHHHHhcCcccccccchHHHHHHHhHh--hccCC-CCc
Confidence 468999999986543 47777899999999998754 45787 543
No 112
>KOG4367 consensus Predicted Zn-finger protein [Function unknown]
Probab=84.85 E-value=0.49 Score=47.52 Aligned_cols=35 Identities=23% Similarity=0.600 Sum_probs=30.0
Q ss_pred CcccccccccccccCCccEEeCCCCccChhhHHHHHhc
Q 021283 230 HDAECAICKENLLVGDKMQELPCKHTFHPPCLKPWLDE 267 (314)
Q Consensus 230 ~~~~C~ICLe~~~~~~~v~~LPCgH~FH~~CI~~WL~~ 267 (314)
++..|+||-.-| +.+++|||+|..|..|...-+.+
T Consensus 3 eelkc~vc~~f~---~epiil~c~h~lc~~ca~~~~~~ 37 (699)
T KOG4367|consen 3 EELKCPVCGSFY---REPIILPCSHNLCQACARNILVQ 37 (699)
T ss_pred ccccCceehhhc---cCceEeecccHHHHHHHHhhccc
Confidence 467899999988 56899999999999999877654
No 113
>COG5109 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=81.02 E-value=1.3 Score=42.89 Aligned_cols=48 Identities=21% Similarity=0.324 Sum_probs=37.7
Q ss_pred hcCCcccccccccccccCCccEEeCCCCccChhhHHHHHhc---CCCCCCc
Q 021283 227 KLGHDAECAICKENLLVGDKMQELPCKHTFHPPCLKPWLDE---HNSCPIC 274 (314)
Q Consensus 227 ~~~~~~~C~ICLe~~~~~~~v~~LPCgH~FH~~CI~~WL~~---~~tCPvC 274 (314)
.....+.|||=-+.-.....++.|.|||+.-..-++..-+. ...||+|
T Consensus 332 hfHs~FiCPVlKe~~t~ENpP~ml~CgHVIskeal~~LS~nG~~~FKCPYC 382 (396)
T COG5109 332 HFHSLFICPVLKELCTDENPPVMLECGHVISKEALSVLSQNGVLSFKCPYC 382 (396)
T ss_pred cccceeeccccHhhhcccCCCeeeeccceeeHHHHHHHhhcCcEEeeCCCC
Confidence 34567899998777766678999999999999998885442 2369999
No 114
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=80.49 E-value=0.65 Score=49.66 Aligned_cols=54 Identities=28% Similarity=0.460 Sum_probs=38.4
Q ss_pred cccccccccccccC----CccEEeCCCCccChhhHHHHHhcCCCCCCcccccCCCCcch
Q 021283 231 DAECAICKENLLVG----DKMQELPCKHTFHPPCLKPWLDEHNSCPICRHELQTDDHAY 285 (314)
Q Consensus 231 ~~~C~ICLe~~~~~----~~v~~LPCgH~FH~~CI~~WL~~~~tCPvCR~~l~~~d~~~ 285 (314)
+..|.-|++..... +.++.+-|+|+||+.|+..-.-++. |-.|-....+.+...
T Consensus 784 e~rc~~c~~~~l~~~~~~~~~~v~~c~h~yhk~c~~~~~~~~~-~~~~~~~~~~~~~~i 841 (846)
T KOG2066|consen 784 EERCSSCFEPNLPSGAAFDSVVVFHCGHMYHKECLMMESLRNA-CNIESGKNRTPDSAI 841 (846)
T ss_pred hhhhhhhcccccccCcccceeeEEEccchhhhcccccHHHhcc-cChhhceecCcchHh
Confidence 56899999886532 4588889999999999877655444 777765554444333
No 115
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=77.56 E-value=1.2 Score=47.84 Aligned_cols=48 Identities=21% Similarity=0.402 Sum_probs=33.2
Q ss_pred cccccccccccccC-CccEEeC---CCCccChhhHHHHHhc------CCCCCCccccc
Q 021283 231 DAECAICKENLLVG-DKMQELP---CKHTFHPPCLKPWLDE------HNSCPICRHEL 278 (314)
Q Consensus 231 ~~~C~ICLe~~~~~-~~v~~LP---CgH~FH~~CI~~WL~~------~~tCPvCR~~l 278 (314)
...|.||.-.+..+ +...++| |+|.||..||..|+.+ +-.|++|..-|
T Consensus 96 s~Ss~~C~~E~S~~~ds~~i~P~~~~~~~~CP~Ci~s~~DqL~~~~k~c~H~FC~~Ci 153 (1134)
T KOG0825|consen 96 SDTSPVCEKEHSPDVDSSNICPVQTHVENQCPNCLKSCNDQLEESEKHTAHYFCEECV 153 (1134)
T ss_pred ccccchhheecCCcccccCcCchhhhhhhhhhHHHHHHHHHhhccccccccccHHHHh
Confidence 45677776666542 2344455 9999999999999763 34688887654
No 116
>KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=75.94 E-value=1.4 Score=45.67 Aligned_cols=48 Identities=33% Similarity=0.883 Sum_probs=39.3
Q ss_pred CcccccccccccccCCccEEeCCCCccChhhHHHHHhcCCCCCCcccccCCCCcc
Q 021283 230 HDAECAICKENLLVGDKMQELPCKHTFHPPCLKPWLDEHNSCPICRHELQTDDHA 284 (314)
Q Consensus 230 ~~~~C~ICLe~~~~~~~v~~LPCgH~FH~~CI~~WL~~~~tCPvCR~~l~~~d~~ 284 (314)
....|.||+... ..+..+|. |..|+..|+..+..||+|+..+..++..
T Consensus 478 ~~~~~~~~~~~~----~~~~~~~~---~~~~l~~~~~~~~~~pl~~~~~~~~~~~ 525 (543)
T KOG0802|consen 478 PNDVCAICYQEM----SARITPCS---HALCLRKWLYVQEVCPLCHTYMKEDDFL 525 (543)
T ss_pred ccCcchHHHHHH----Hhcccccc---chhHHHhhhhhccccCCCchhhhccccc
Confidence 467899999987 35566788 8999999999999999999887655543
No 117
>COG5183 SSM4 Protein involved in mRNA turnover and stability [RNA processing and modification]
Probab=75.61 E-value=1.3 Score=47.61 Aligned_cols=57 Identities=30% Similarity=0.645 Sum_probs=41.0
Q ss_pred CcccccccccccccCCccEEeCCC-----CccChhhHHHHHhcC--CCCCCcccccCCCCcchhh
Q 021283 230 HDAECAICKENLLVGDKMQELPCK-----HTFHPPCLKPWLDEH--NSCPICRHELQTDDHAYES 287 (314)
Q Consensus 230 ~~~~C~ICLe~~~~~~~v~~LPCg-----H~FH~~CI~~WL~~~--~tCPvCR~~l~~~d~~~~~ 287 (314)
++..|-||..+=..++ +---||+ ...|.+|+..|+.-+ ..|-+|..++..++.-.++
T Consensus 11 d~~~CRICr~e~~~d~-pLfhPCKC~GSIkYiH~eCL~eW~~~s~~~kCdiChy~~~Fk~IY~e~ 74 (1175)
T COG5183 11 DKRSCRICRTEDIRDD-PLFHPCKCSGSIKYIHRECLMEWMECSGTKKCDICHYEYKFKDIYKED 74 (1175)
T ss_pred cchhceeecCCCCCCC-cCcccccccchhHHHHHHHHHHHHhcCCCcceeeecceeeeeeecccC
Confidence 3568999998865544 3444665 458999999999844 3799999988766644433
No 118
>KOG1815 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=75.40 E-value=1.4 Score=44.56 Aligned_cols=36 Identities=36% Similarity=0.799 Sum_probs=30.4
Q ss_pred CcccccccccccccCCccEEeCCCCccChhhHHHHHhc
Q 021283 230 HDAECAICKENLLVGDKMQELPCKHTFHPPCLKPWLDE 267 (314)
Q Consensus 230 ~~~~C~ICLe~~~~~~~v~~LPCgH~FH~~CI~~WL~~ 267 (314)
....|-||.+.+.. ....+.|+|.||..|+...+..
T Consensus 69 ~~~~c~ic~~~~~~--~~~~~~c~H~~c~~cw~~yl~~ 104 (444)
T KOG1815|consen 69 GDVQCGICVESYDG--EIIGLGCGHPFCPPCWTGYLGT 104 (444)
T ss_pred ccccCCcccCCCcc--hhhhcCCCcHHHHHHHHHHhhh
Confidence 46799999999843 5777889999999999999873
No 119
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=75.04 E-value=2.2 Score=41.44 Aligned_cols=54 Identities=28% Similarity=0.583 Sum_probs=39.6
Q ss_pred ccccccccccccCC-ccEEeCCCCccChhhHHHHHhcCCCCCCcccccCCCCcch
Q 021283 232 AECAICKENLLVGD-KMQELPCKHTFHPPCLKPWLDEHNSCPICRHELQTDDHAY 285 (314)
Q Consensus 232 ~~C~ICLe~~~~~~-~v~~LPCgH~FH~~CI~~WL~~~~tCPvCR~~l~~~d~~~ 285 (314)
..|+||-+.....+ ...-.||++..|..|...-...+..||.||.+......+.
T Consensus 250 ~s~p~~~~~~~~~d~~~lP~~~~~~~~l~~~~t~~~~~~~~~~~rk~~~~~t~~s 304 (327)
T KOG2068|consen 250 PSCPICYEDLDLTDSNFLPCPCGFRLCLFCHKTISDGDGRCPGCRKPYERNTKKS 304 (327)
T ss_pred CCCCCCCCcccccccccccccccccchhhhhhcccccCCCCCccCCccccCcccc
Confidence 68999999873322 3444558888888888887778899999997765544433
No 120
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=74.83 E-value=2.1 Score=45.74 Aligned_cols=40 Identities=28% Similarity=0.541 Sum_probs=30.2
Q ss_pred ccccccccccccCCccEEeC-CCCccChhhHHHHHhcCCCCCC
Q 021283 232 AECAICKENLLVGDKMQELP-CKHTFHPPCLKPWLDEHNSCPI 273 (314)
Q Consensus 232 ~~C~ICLe~~~~~~~v~~LP-CgH~FH~~CI~~WL~~~~tCPv 273 (314)
..|.+|--.+. |- .+..+ |+|.-|..|+.+|+..+..||.
T Consensus 780 ~~CtVC~~vi~-G~-~~~c~~C~H~gH~sh~~sw~~~~s~ca~ 820 (839)
T KOG0269|consen 780 AKCTVCDLVIR-GV-DVWCQVCGHGGHDSHLKSWFFKASPCAK 820 (839)
T ss_pred cCceeecceee-ee-EeecccccccccHHHHHHHHhcCCCCcc
Confidence 46888877652 22 22333 9999999999999999888877
No 121
>KOG1829 consensus Uncharacterized conserved protein, contains C1, PH and RUN domains [Signal transduction mechanisms]
Probab=74.63 E-value=0.99 Score=47.10 Aligned_cols=40 Identities=25% Similarity=0.716 Sum_probs=24.7
Q ss_pred ccccccccc-----ccccCCccEE-eCCCCccChhhHHHHHhcCCCCCCc
Q 021283 231 DAECAICKE-----NLLVGDKMQE-LPCKHTFHPPCLKPWLDEHNSCPIC 274 (314)
Q Consensus 231 ~~~C~ICLe-----~~~~~~~v~~-LPCgH~FH~~CI~~WL~~~~tCPvC 274 (314)
..-|.||.. .|. .+.+.. ..|+++||..|+.. .+.-||.|
T Consensus 511 gfiCe~Cq~~~iiyPF~-~~~~~rC~~C~avfH~~C~~r---~s~~CPrC 556 (580)
T KOG1829|consen 511 GFICELCQHNDIIYPFE-TRNTRRCSTCLAVFHKKCLRR---KSPCCPRC 556 (580)
T ss_pred eeeeeeccCCCcccccc-cccceeHHHHHHHHHHHHHhc---cCCCCCch
Confidence 455666622 232 233333 44999999999554 44459999
No 122
>KOG4718 consensus Non-SMC (structural maintenance of chromosomes) element 1 protein (NSE1) [Chromatin structure and dynamics]
Probab=73.23 E-value=1.8 Score=39.75 Aligned_cols=43 Identities=23% Similarity=0.742 Sum_probs=34.5
Q ss_pred cccccccccccccCCccEEeCCCCccChhhHHHHHhcCCCCCCcc
Q 021283 231 DAECAICKENLLVGDKMQELPCKHTFHPPCLKPWLDEHNSCPICR 275 (314)
Q Consensus 231 ~~~C~ICLe~~~~~~~v~~LPCgH~FH~~CI~~WL~~~~tCPvCR 275 (314)
...|.+|.+-...+ ++.-.|+-.+|..|+...+.+.+.||.|-
T Consensus 181 lk~Cn~Ch~LvIqg--~rCg~c~i~~h~~c~qty~q~~~~cphc~ 223 (235)
T KOG4718|consen 181 LKNCNLCHCLVIQG--IRCGSCNIQYHRGCIQTYLQRRDICPHCG 223 (235)
T ss_pred HHHHhHhHHHhhee--eccCcccchhhhHHHHHHhcccCcCCchh
Confidence 45899999987432 22334888999999999999999999994
No 123
>KOG3842 consensus Adaptor protein Pellino [Signal transduction mechanisms]
Probab=73.10 E-value=3.4 Score=40.11 Aligned_cols=53 Identities=26% Similarity=0.627 Sum_probs=35.0
Q ss_pred Ccccccccccccc---------------cCC-ccEEeCCCCccChhhHHHHHh---------cCCCCCCcccccCCCC
Q 021283 230 HDAECAICKENLL---------------VGD-KMQELPCKHTFHPPCLKPWLD---------EHNSCPICRHELQTDD 282 (314)
Q Consensus 230 ~~~~C~ICLe~~~---------------~~~-~v~~LPCgH~FH~~CI~~WL~---------~~~tCPvCR~~l~~~d 282 (314)
.+.+||+|+..=. .+- .-.-.||||+--..-..-|-. .+..||.|-+.|....
T Consensus 340 ~~r~CPmC~~~gp~V~L~lG~E~~f~vD~G~pthaF~PCGHv~sekt~~YWs~iplPhGT~~f~a~CPFC~~~L~ge~ 417 (429)
T KOG3842|consen 340 RERECPMCRVVGPYVPLWLGCEAGFYVDAGPPTHAFNPCGHVCSEKTVKYWSQIPLPHGTHAFHAACPFCATQLAGEQ 417 (429)
T ss_pred ccCcCCeeeeecceeeeeccccceeEecCCCcccccCCcccccchhhhhHhhcCcCCCccccccccCcchhhhhccCC
Confidence 3678999986410 011 122358999988888888865 2447999988775443
No 124
>PF02891 zf-MIZ: MIZ/SP-RING zinc finger; InterPro: IPR004181 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents MIZ-type zinc finger domains. Miz1 (Msx-interacting-zinc finger) is a zinc finger-containing protein with homology to the yeast protein, Nfi-1. Miz1 is a sequence specific DNA binding protein that can function as a positive-acting transcription factor. Miz1 binds to the homeobox protein Msx2, enhancing the specific DNA-binding ability of Msx2 []. Other proteins containing this domain include the human pias family (protein inhibitor of activated STAT protein). More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 3I2D_A.
Probab=72.57 E-value=3.8 Score=28.87 Aligned_cols=43 Identities=23% Similarity=0.516 Sum_probs=19.7
Q ss_pred ccccccccccccCCccEEeCCCCccChhhHHHHHhc---C--CCCCCcccc
Q 021283 232 AECAICKENLLVGDKMQELPCKHTFHPPCLKPWLDE---H--NSCPICRHE 277 (314)
Q Consensus 232 ~~C~ICLe~~~~~~~v~~LPCgH~FH~~CI~~WL~~---~--~tCPvCR~~ 277 (314)
..|||....+. ..++...|.|.-|.+ +..||.. . -.||+|..+
T Consensus 3 L~CPls~~~i~--~P~Rg~~C~H~~CFD-l~~fl~~~~~~~~W~CPiC~~~ 50 (50)
T PF02891_consen 3 LRCPLSFQRIR--IPVRGKNCKHLQCFD-LESFLESNQRTPKWKCPICNKP 50 (50)
T ss_dssp SB-TTTSSB-S--SEEEETT--SS--EE-HHHHHHHHHHS---B-TTT---
T ss_pred eeCCCCCCEEE--eCccCCcCcccceEC-HHHHHHHhhccCCeECcCCcCc
Confidence 47999888873 345555699984422 4455542 2 269999763
No 125
>KOG3113 consensus Uncharacterized conserved protein [Function unknown]
Probab=71.91 E-value=5.9 Score=37.37 Aligned_cols=50 Identities=20% Similarity=0.319 Sum_probs=36.8
Q ss_pred cccccccccccccCCc-cEEeCCCCccChhhHHHHHhcCCCCCCcccccCCCC
Q 021283 231 DAECAICKENLLVGDK-MQELPCKHTFHPPCLKPWLDEHNSCPICRHELQTDD 282 (314)
Q Consensus 231 ~~~C~ICLe~~~~~~~-v~~LPCgH~FH~~CI~~WL~~~~tCPvCR~~l~~~d 282 (314)
.+.|||---+|..... +..-+|||+|-..-+.+. ...+|++|.+.+..+|
T Consensus 111 ~fiCPvtgleMng~~~F~~l~~CGcV~SerAlKei--kas~C~~C~a~y~~~d 161 (293)
T KOG3113|consen 111 RFICPVTGLEMNGKYRFCALRCCGCVFSERALKEI--KASVCHVCGAAYQEDD 161 (293)
T ss_pred eeecccccceecceEEEEEEeccceeccHHHHHHh--hhccccccCCcccccC
Confidence 4679997777643332 555679999998887774 4778999998876555
No 126
>KOG1812 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=70.91 E-value=2.1 Score=42.68 Aligned_cols=68 Identities=24% Similarity=0.386 Sum_probs=40.8
Q ss_pred CCHHHHhhCCCccchhHHh-hhc-CCcccccccccccccCC--ccEEeCCCCccChhhHHHHHhcCCCCCCc
Q 021283 207 ASKEVVAKLPVITLTEEIL-DKL-GHDAECAICKENLLVGD--KMQELPCKHTFHPPCLKPWLDEHNSCPIC 274 (314)
Q Consensus 207 ~s~e~i~~Lp~~~~~~~~~-~~~-~~~~~C~ICLe~~~~~~--~v~~LPCgH~FH~~CI~~WL~~~~tCPvC 274 (314)
.+=+..+++....+..... +.+ ..-..|++|.-.+.-.. ..+...|||.||..|...|...+..|..|
T Consensus 280 ~sC~eykk~~~~~~~d~~~~~~la~~wr~CpkC~~~ie~~~GCnhm~CrC~~~fcy~C~~~~~~~~~~~~~~ 351 (384)
T KOG1812|consen 280 LSCEEYKKLNPEEYVDDITLKYLAKRWRQCPKCKFMIELSEGCNHMTCRCGHQFCYMCGGDWKTHNGECYEC 351 (384)
T ss_pred CCHHHHHHhCCcccccHHHHHHHHHhcCcCcccceeeeecCCcceEEeeccccchhhcCcchhhCCccccCc
Confidence 4455555555444332221 111 23468999977654323 23333499999999999998877777554
No 127
>KOG3579 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=68.70 E-value=3 Score=39.87 Aligned_cols=38 Identities=24% Similarity=0.530 Sum_probs=29.6
Q ss_pred cccccccccccccCCccEEeC--CCCccChhhHHHHHhcCC
Q 021283 231 DAECAICKENLLVGDKMQELP--CKHTFHPPCLKPWLDEHN 269 (314)
Q Consensus 231 ~~~C~ICLe~~~~~~~v~~LP--CgH~FH~~CI~~WL~~~~ 269 (314)
-..|.+|.|.+++ ..-+..| =.|.||..|-+.-++.+.
T Consensus 268 pLcCTLC~ERLED-THFVQCPSVp~HKFCFPCSResIK~Qg 307 (352)
T KOG3579|consen 268 PLCCTLCHERLED-THFVQCPSVPSHKFCFPCSRESIKQQG 307 (352)
T ss_pred ceeehhhhhhhcc-CceeecCCCcccceecccCHHHHHhhc
Confidence 4689999999954 4455555 469999999999988654
No 128
>PF13901 DUF4206: Domain of unknown function (DUF4206)
Probab=62.70 E-value=4.8 Score=36.40 Aligned_cols=39 Identities=36% Similarity=0.955 Sum_probs=28.0
Q ss_pred cccccccccc-----cccCCccEEeC-CCCccChhhHHHHHhcCCCCCCcc
Q 021283 231 DAECAICKEN-----LLVGDKMQELP-CKHTFHPPCLKPWLDEHNSCPICR 275 (314)
Q Consensus 231 ~~~C~ICLe~-----~~~~~~v~~LP-CgH~FH~~CI~~WL~~~~tCPvCR 275 (314)
...|-||-.. |.. +.++..+ |+-+||..|... ..||-|-
T Consensus 152 GfiCe~C~~~~~IfPF~~-~~~~~C~~C~~v~H~~C~~~-----~~CpkC~ 196 (202)
T PF13901_consen 152 GFICEICNSDDIIFPFQI-DTTVRCPKCKSVFHKSCFRK-----KSCPKCA 196 (202)
T ss_pred CCCCccCCCCCCCCCCCC-CCeeeCCcCccccchhhcCC-----CCCCCcH
Confidence 5688888753 322 3455666 999999999662 6799994
No 129
>PF10571 UPF0547: Uncharacterised protein family UPF0547; InterPro: IPR018886 This domain may well be a type of zinc-finger as it carries two pairs of highly conserved cysteine residues though with no accompanying histidines. Several members are annotated as putative helicases.
Probab=60.11 E-value=4.2 Score=24.93 Aligned_cols=22 Identities=23% Similarity=0.619 Sum_probs=13.6
Q ss_pred cccccccccccCCccEEeC-CCCcc
Q 021283 233 ECAICKENLLVGDKMQELP-CKHTF 256 (314)
Q Consensus 233 ~C~ICLe~~~~~~~v~~LP-CgH~F 256 (314)
.||-|...+. .....-| |||.|
T Consensus 2 ~CP~C~~~V~--~~~~~Cp~CG~~F 24 (26)
T PF10571_consen 2 TCPECGAEVP--ESAKFCPHCGYDF 24 (26)
T ss_pred cCCCCcCCch--hhcCcCCCCCCCC
Confidence 5777777753 2344456 77776
No 130
>PF04710 Pellino: Pellino; InterPro: IPR006800 Pellino is involved in Toll-like signalling pathways, and associates with the kinase domain of the Pelle Ser/Thr kinase [, , ].; PDB: 3EGB_B 3EGA_A.
Probab=60.00 E-value=2.9 Score=41.64 Aligned_cols=49 Identities=27% Similarity=0.594 Sum_probs=0.0
Q ss_pred cccccccccccc-------------cC---CccEEeCCCCccChhhHHHHHh---------cCCCCCCcccccC
Q 021283 231 DAECAICKENLL-------------VG---DKMQELPCKHTFHPPCLKPWLD---------EHNSCPICRHELQ 279 (314)
Q Consensus 231 ~~~C~ICLe~~~-------------~~---~~v~~LPCgH~FH~~CI~~WL~---------~~~tCPvCR~~l~ 279 (314)
..+||+|+..-. .+ -.-.-.||||+--.....-|-. .+..||.|-.+|.
T Consensus 328 ~r~CPlCr~~g~~V~L~mG~E~afyvD~~~pthaF~PCGHv~SekTa~yWs~i~lPhGt~~f~a~CPFCa~~L~ 401 (416)
T PF04710_consen 328 SRTCPLCRQVGPYVPLWMGCEPAFYVDSGPPTHAFNPCGHVCSEKTAKYWSQIPLPHGTHAFHAACPFCATPLD 401 (416)
T ss_dssp --------------------------------------------------------------------------
T ss_pred cccCCCccccCCceeEeeccccceeecCCCCceeecccccccchhhhhhhhcCCCCCCcccccccCCcccCccc
Confidence 678999986411 01 1133468999998889999955 1347999988875
No 131
>KOG3005 consensus GIY-YIG type nuclease [General function prediction only]
Probab=58.46 E-value=5.2 Score=37.92 Aligned_cols=48 Identities=31% Similarity=0.649 Sum_probs=33.1
Q ss_pred ccccccccccccCC-ccEEe--C-CCCccChhhHHHHHh---------cCCCCCCcccccC
Q 021283 232 AECAICKENLLVGD-KMQEL--P-CKHTFHPPCLKPWLD---------EHNSCPICRHELQ 279 (314)
Q Consensus 232 ~~C~ICLe~~~~~~-~v~~L--P-CgH~FH~~CI~~WL~---------~~~tCPvCR~~l~ 279 (314)
.+|-||.+.+...+ .+... | |+-++|..|+..-+. ....||.|+..+.
T Consensus 183 ~~celc~~ei~e~~~~~a~c~~~~c~~~~h~~CLa~~~~~~e~g~~~p~eg~cp~C~~~~~ 243 (276)
T KOG3005|consen 183 VECELCEKEILETDWSRATCPNPDCDSLNHLTCLAEELLEVEPGQLIPLEGMCPKCEKFLS 243 (276)
T ss_pred hhhHHHHHHhccccceeccCCCCCCCchhhhhhhhHHHhccCCCceeccCCCCCchhceee
Confidence 58999999984323 22222 2 888899999988443 2347999987543
No 132
>KOG2807 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit SSL1 [Transcription; Replication, recombination and repair]
Probab=58.39 E-value=8.6 Score=37.55 Aligned_cols=67 Identities=21% Similarity=0.382 Sum_probs=37.9
Q ss_pred HHHHhhCCCccchhHHhhhcCCcccccccccccccCCccEEeC-CCCccChhhHHHHHhcCCCCCCccc
Q 021283 209 KEVVAKLPVITLTEEILDKLGHDAECAICKENLLVGDKMQELP-CKHTFHPPCLKPWLDEHNSCPICRH 276 (314)
Q Consensus 209 ~e~i~~Lp~~~~~~~~~~~~~~~~~C~ICLe~~~~~~~v~~LP-CgH~FH~~CI~~WL~~~~tCPvCR~ 276 (314)
+..-.-.|...+.+...........|-.|........ ....+ |.|.||.+|=.-.=..-..||-|..
T Consensus 308 RSyhhL~PL~~F~Eip~~~~~~~~~Cf~C~~~~~~~~-~y~C~~Ck~~FCldCDv~iHesLh~CpgCeh 375 (378)
T KOG2807|consen 308 RSYHHLFPLKPFVEIPETEYNGSRFCFACQGELLSSG-RYRCESCKNVFCLDCDVFIHESLHNCPGCEH 375 (378)
T ss_pred HHHHhhcCCcchhhccccccCCCcceeeeccccCCCC-cEEchhccceeeccchHHHHhhhhcCCCcCC
Confidence 3333444444443322222223456999977765433 44444 9999999994432223346999974
No 133
>PF13719 zinc_ribbon_5: zinc-ribbon domain
Probab=57.83 E-value=5.3 Score=26.26 Aligned_cols=26 Identities=31% Similarity=0.714 Sum_probs=16.6
Q ss_pred ccccccccccccCCc-------cEEeC-CCCccC
Q 021283 232 AECAICKENLLVGDK-------MQELP-CKHTFH 257 (314)
Q Consensus 232 ~~C~ICLe~~~~~~~-------v~~LP-CgH~FH 257 (314)
..||-|...|..++. .+.-| |+|.|.
T Consensus 3 i~CP~C~~~f~v~~~~l~~~~~~vrC~~C~~~f~ 36 (37)
T PF13719_consen 3 ITCPNCQTRFRVPDDKLPAGGRKVRCPKCGHVFR 36 (37)
T ss_pred EECCCCCceEEcCHHHcccCCcEEECCCCCcEee
Confidence 368888887765442 33444 778774
No 134
>PF06844 DUF1244: Protein of unknown function (DUF1244); InterPro: IPR009654 This family consists of several short bacterial proteins of around 100 residues in length. The function of this family is unknown.; PDB: 2O35_A 3FYB_B.
Probab=54.65 E-value=7 Score=29.40 Aligned_cols=44 Identities=27% Similarity=0.551 Sum_probs=19.4
Q ss_pred ccChhhHHHHHhc----CC---CCCCcccccCCCCcchhhHHHH-HHHHHHHHh
Q 021283 255 TFHPPCLKPWLDE----HN---SCPICRHELQTDDHAYESWKER-EKEAQEERK 300 (314)
Q Consensus 255 ~FH~~CI~~WL~~----~~---tCPvCR~~l~~~d~~~~~~~~r-~~~~~~e~~ 300 (314)
-||+.|+.+|+.. .. +=.-+|..| =.-+|++||.+ ..++..|..
T Consensus 11 gFCRNCLskWy~~aA~~~g~~~~~d~ARE~v--YGMPy~eWK~~~Q~~At~eQ~ 62 (68)
T PF06844_consen 11 GFCRNCLSKWYREAAEERGIEMDKDEAREIV--YGMPYDEWKAKHQTEATPEQL 62 (68)
T ss_dssp S--HHHHHHHHHHHHHHCT----HHHHHHHH--HSS-HHHHCHCH-----HHHH
T ss_pred HHHHHHHHHHHHHHHHhcCCcCCHHHHHHHH--hCCCHHHHHHHHCCCCCHHHH
Confidence 4999999999872 11 112222222 12357788776 345444443
No 135
>PF07191 zinc-ribbons_6: zinc-ribbons; InterPro: IPR010807 This family consists of several short, hypothetical bacterial proteins of around 70 residues in length. Members of this family 8 highly conserved cysteine residues. The function of the family is unknown.; PDB: 2JRP_A 2JNE_A.
Probab=54.43 E-value=1.5 Score=33.38 Aligned_cols=39 Identities=26% Similarity=0.564 Sum_probs=20.6
Q ss_pred ccccccccccccCCccEEeCCCCccChhhHHHHHhcCCCCCCccccc
Q 021283 232 AECAICKENLLVGDKMQELPCKHTFHPPCLKPWLDEHNSCPICRHEL 278 (314)
Q Consensus 232 ~~C~ICLe~~~~~~~v~~LPCgH~FH~~CI~~WL~~~~tCPvCR~~l 278 (314)
..||+|..++.... +|.+|..|-.. +.....||-|..+|
T Consensus 2 ~~CP~C~~~L~~~~-------~~~~C~~C~~~-~~~~a~CPdC~~~L 40 (70)
T PF07191_consen 2 NTCPKCQQELEWQG-------GHYHCEACQKD-YKKEAFCPDCGQPL 40 (70)
T ss_dssp -B-SSS-SBEEEET-------TEEEETTT--E-EEEEEE-TTT-SB-
T ss_pred CcCCCCCCccEEeC-------CEEECcccccc-ceecccCCCcccHH
Confidence 47999988874322 56666666554 34566788888776
No 136
>smart00132 LIM Zinc-binding domain present in Lin-11, Isl-1, Mec-3. Zinc-binding domain family. Some LIM domains bind protein partners via tyrosine-containing motifs. LIM domains are found in many key regulators of developmental pathways.
Probab=54.37 E-value=11 Score=23.50 Aligned_cols=37 Identities=27% Similarity=0.606 Sum_probs=23.7
Q ss_pred cccccccccccCCccEEeCCCCccChhhHHHHHhcCCCCCCccccc
Q 021283 233 ECAICKENLLVGDKMQELPCKHTFHPPCLKPWLDEHNSCPICRHEL 278 (314)
Q Consensus 233 ~C~ICLe~~~~~~~v~~LPCgH~FH~~CI~~WL~~~~tCPvCR~~l 278 (314)
.|..|-..+..... ....=+..||..| ..|..|..+|
T Consensus 1 ~C~~C~~~i~~~~~-~~~~~~~~~H~~C--------f~C~~C~~~L 37 (39)
T smart00132 1 KCAGCGKPIRGGEL-VLRALGKVWHPEC--------FKCSKCGKPL 37 (39)
T ss_pred CccccCCcccCCcE-EEEeCCccccccC--------CCCcccCCcC
Confidence 37788887754322 2223467899877 4688887766
No 137
>PF07304 SRA1: Steroid receptor RNA activator (SRA1); InterPro: IPR009917 This entry consists of several hypothetical mammalian steroid receptor RNA activator proteins. The SRA-RNAs encode stable proteins that are widely expressed and upregulated in breast cancer cell lines. SRA-RNA is a steroid receptor co-activator which acts as a functional RNA. This domain is also found at the C terminus of Sec31, a component of the coat protein complex II (COPII, which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). COPII has two main functions, the physical deformation of the endoplasmic reticulum membrane into vesicles and the selection of cargo molecules. ; PDB: 2YRU_A.
Probab=53.97 E-value=54 Score=28.53 Aligned_cols=37 Identities=27% Similarity=0.486 Sum_probs=19.7
Q ss_pred HHHHHHHHHHhcCCCCC-chhhHHhH-HHHHHHhhhccC
Q 021283 51 YSVVCRVATILKTRYTA-PGFWLAGL-RLFELAESLVSD 87 (314)
Q Consensus 51 ~~~v~~~~~~l~~~~~~-~~~w~~gl-~~f~~~~~~~~~ 87 (314)
|.+.-.+-+-|-|.+.. -|.|+.|+ +|.-++.++-+.
T Consensus 106 ~~~A~~Ih~~L~t~h~~E~~~WmvGVKRLI~~~r~~~~~ 144 (157)
T PF07304_consen 106 YDAADEIHVDLMTDHVDECGNWMVGVKRLIAMARNLPPE 144 (157)
T ss_dssp HHHHHHHHHHHHHSSHHHHTTTHHHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHHHhccHHHhhhHHHHHHHHHHHHHhcCcc
Confidence 33333333444444444 66799887 666666665554
No 138
>PF04216 FdhE: Protein involved in formate dehydrogenase formation; InterPro: IPR006452 This family of sequences describe an accessory protein required for the assembly of formate dehydrogenase of certain proteobacteria although not present in the final complex []. The exact nature of the function of FdhE in the assembly of the complex is unknown, but considering the presence of selenocysteine, molybdopterin, iron-sulphur clusters and cytochrome b556, it is likely to be involved in the insertion of cofactors. ; GO: 0005737 cytoplasm; PDB: 2FIY_B.
Probab=53.65 E-value=1.8 Score=41.21 Aligned_cols=45 Identities=16% Similarity=0.385 Sum_probs=19.8
Q ss_pred cccccccccccccCCccEEe---CCCCccChhhHHHHHhcCCCCCCccc
Q 021283 231 DAECAICKENLLVGDKMQEL---PCKHTFHPPCLKPWLDEHNSCPICRH 276 (314)
Q Consensus 231 ~~~C~ICLe~~~~~~~v~~L---PCgH~FH~~CI~~WL~~~~tCPvCR~ 276 (314)
...||||=..-..+. +..- .=.|.+|.-|-..|--....||.|-.
T Consensus 172 ~g~CPvCGs~P~~s~-l~~~~~~G~R~L~Cs~C~t~W~~~R~~Cp~Cg~ 219 (290)
T PF04216_consen 172 RGYCPVCGSPPVLSV-LRGGEREGKRYLHCSLCGTEWRFVRIKCPYCGN 219 (290)
T ss_dssp -SS-TTT---EEEEE-EE------EEEEEETTT--EEE--TTS-TTT--
T ss_pred CCcCCCCCCcCceEE-EecCCCCccEEEEcCCCCCeeeecCCCCcCCCC
Confidence 358999976532111 0000 12466888898999777788999954
No 139
>PF07975 C1_4: TFIIH C1-like domain; InterPro: IPR004595 All proteins in this domain for which functions are known are components of the TFIIH complex which is involved in the initiation of transcription and nucleotide excision repair. It includes the yeast transcription factor Ssl1 (Suppressor of stem-loop protein 1) that is essential for translation initiation and affects UV resistance. The C-terminal region is essential for transcription activity. This regions binds three zinc atoms through two independent domain. The first contains a C4 zinc finger motif, whereas the second is characterised by a CX(2)CX(2-4)FCADCD motif. The solution structure of the second C-terminal domain revealed homology with the regulatory domain of protein kinase C [].; GO: 0006281 DNA repair, 0005634 nucleus; PDB: 1Z60_A.
Probab=53.62 E-value=11 Score=26.95 Aligned_cols=41 Identities=27% Similarity=0.609 Sum_probs=19.5
Q ss_pred ccccccccccC------CccEEeC-CCCccChhhHHHHHh-cCCCCCCcc
Q 021283 234 CAICKENLLVG------DKMQELP-CKHTFHPPCLKPWLD-EHNSCPICR 275 (314)
Q Consensus 234 C~ICLe~~~~~------~~v~~LP-CgH~FH~~CI~~WL~-~~~tCPvCR 275 (314)
|--|+..|... .....-| |++.||.+|=.- +. .--.||-|-
T Consensus 2 CfgC~~~~~~~~~~~~~~~~y~C~~C~~~FC~dCD~f-iHE~LH~CPGC~ 50 (51)
T PF07975_consen 2 CFGCQKPFPDGPEKKADSSRYRCPKCKNHFCIDCDVF-IHETLHNCPGCE 50 (51)
T ss_dssp ETTTTEE-TTS-------EEE--TTTT--B-HHHHHT-TTTTS-SSSTT-
T ss_pred CccCCCCCCCcccccccCCeEECCCCCCccccCcChh-hhccccCCcCCC
Confidence 55566666543 1345566 999999999332 22 223699883
No 140
>PF06906 DUF1272: Protein of unknown function (DUF1272); InterPro: IPR010696 This family consists of several hypothetical bacterial proteins of around 80 residues in length. This family contains a number of conserved cysteine residues and its function is unknown.
Probab=52.96 E-value=21 Score=26.06 Aligned_cols=47 Identities=26% Similarity=0.535 Sum_probs=32.9
Q ss_pred cccccccccccCC-ccEEeCCCCccChhhHHHHHhcCCCCCCcccccCCC
Q 021283 233 ECAICKENLLVGD-KMQELPCKHTFHPPCLKPWLDEHNSCPICRHELQTD 281 (314)
Q Consensus 233 ~C~ICLe~~~~~~-~v~~LPCgH~FH~~CI~~WL~~~~tCPvCR~~l~~~ 281 (314)
.|-.|-.++..+. ...+..=...||..|....| +..||.|-..+...
T Consensus 7 nCE~C~~dLp~~s~~A~ICSfECTFC~~C~e~~l--~~~CPNCgGelv~R 54 (57)
T PF06906_consen 7 NCECCDKDLPPDSPEAYICSFECTFCADCAETML--NGVCPNCGGELVRR 54 (57)
T ss_pred CccccCCCCCCCCCcceEEeEeCcccHHHHHHHh--cCcCcCCCCccccC
Confidence 5777777775544 23332223479999999976 78999999887643
No 141
>PF01363 FYVE: FYVE zinc finger; InterPro: IPR000306 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The FYVE zinc finger is named after four proteins that it has been found in: Fab1, YOTB/ZK632.12, Vac1, and EEA1. The FYVE finger has been shown to bind two zinc ions []. The FYVE finger has eight potential zinc coordinating cysteine positions. Many members of this family also include two histidines in a motif R+HHC+XCG, where + represents a charged residue and X any residue. FYVE-type domains are divided into two known classes: FYVE domains that specifically bind to phosphatidylinositol 3-phosphate in lipid bilayers and FYVE-related domains of undetermined function []. Those that bind to phosphatidylinositol 3-phosphate are often found in proteins targeted to lipid membranes that are involved in regulating membrane traffic [, , ]. Most FYVE domains target proteins to endosomes by binding specifically to phosphatidylinositol-3-phosphate at the membrane surface. By contrast, the CARP2 FYVE-like domain is not optimized to bind to phosphoinositides or insert into lipid bilayers. FYVE domains are distinguished from other zinc fingers by three signature sequences: an N-terminal WxxD motif, a basic R(R/K)HHCR patch, and a C-terminal RVC motif. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0046872 metal ion binding; PDB: 1HYI_A 1JOC_B 1HYJ_A 1DVP_A 3ZYQ_A 4AVX_A 1VFY_A 3T7L_A 1X4U_A 1WFK_A ....
Probab=50.49 E-value=7.1 Score=28.64 Aligned_cols=35 Identities=14% Similarity=0.443 Sum_probs=18.7
Q ss_pred cccccccccccccCCccEEeC-CCCccChhhHHHHH
Q 021283 231 DAECAICKENLLVGDKMQELP-CKHTFHPPCLKPWL 265 (314)
Q Consensus 231 ~~~C~ICLe~~~~~~~v~~LP-CgH~FH~~CI~~WL 265 (314)
...|.+|...|..-.....-. ||++||..|.....
T Consensus 9 ~~~C~~C~~~F~~~~rrhhCr~CG~~vC~~Cs~~~~ 44 (69)
T PF01363_consen 9 ASNCMICGKKFSLFRRRHHCRNCGRVVCSSCSSQRI 44 (69)
T ss_dssp -SB-TTT--B-BSSS-EEE-TTT--EEECCCS-EEE
T ss_pred CCcCcCcCCcCCCceeeEccCCCCCEECCchhCCEE
Confidence 568999999996544444444 99999999987654
No 142
>KOG4451 consensus Uncharacterized conserved protein (tumor-associated antigen HCA127 in humans) [Function unknown]
Probab=49.49 E-value=9.2 Score=35.58 Aligned_cols=31 Identities=16% Similarity=0.448 Sum_probs=21.0
Q ss_pred hhHHHHHhcCCCCCCcccccCCCCcchhhHH
Q 021283 259 PCLKPWLDEHNSCPICRHELQTDDHAYESWK 289 (314)
Q Consensus 259 ~CI~~WL~~~~tCPvCR~~l~~~d~~~~~~~ 289 (314)
.|-.+.-+.-..||+|+..-.+.+++.+.+|
T Consensus 254 sChqqIHRNAPiCPlCKaKsRSrNPKKpkrk 284 (286)
T KOG4451|consen 254 SCHQQIHRNAPICPLCKAKSRSRNPKKPKRK 284 (286)
T ss_pred HHHHHHhcCCCCCcchhhccccCCCCCcccc
Confidence 3333333466799999998888887766543
No 143
>cd00065 FYVE FYVE domain; Zinc-binding domain; targets proteins to membrane lipids via interaction with phosphatidylinositol-3-phosphate, PI3P; present in Fab1, YOTB, Vac1, and EEA1;
Probab=49.44 E-value=11 Score=26.36 Aligned_cols=35 Identities=14% Similarity=0.426 Sum_probs=25.1
Q ss_pred ccccccccccccCCccEEeC-CCCccChhhHHHHHh
Q 021283 232 AECAICKENLLVGDKMQELP-CKHTFHPPCLKPWLD 266 (314)
Q Consensus 232 ~~C~ICLe~~~~~~~v~~LP-CgH~FH~~CI~~WL~ 266 (314)
..|.+|-..|.......... ||++||..|......
T Consensus 3 ~~C~~C~~~F~~~~rk~~Cr~Cg~~~C~~C~~~~~~ 38 (57)
T cd00065 3 SSCMGCGKPFTLTRRRHHCRNCGRIFCSKCSSNRIP 38 (57)
T ss_pred CcCcccCccccCCccccccCcCcCCcChHHcCCeee
Confidence 57999988886543333333 999999999876644
No 144
>PF04710 Pellino: Pellino; InterPro: IPR006800 Pellino is involved in Toll-like signalling pathways, and associates with the kinase domain of the Pelle Ser/Thr kinase [, , ].; PDB: 3EGB_B 3EGA_A.
Probab=49.21 E-value=7.8 Score=38.74 Aligned_cols=44 Identities=23% Similarity=0.552 Sum_probs=0.0
Q ss_pred cccccccccccc-----------CCccEEeCCCCccChhhHHHHHh------cCCCCCCccccc
Q 021283 232 AECAICKENLLV-----------GDKMQELPCKHTFHPPCLKPWLD------EHNSCPICRHEL 278 (314)
Q Consensus 232 ~~C~ICLe~~~~-----------~~~v~~LPCgH~FH~~CI~~WL~------~~~tCPvCR~~l 278 (314)
..|||=|..+.. ....+-|.|||++... .|-. ...+||+||..-
T Consensus 278 pQCPVglnTL~fp~~~~~~~~~~~qP~VYl~CGHVhG~h---~Wg~~~~~~~~~r~CPlCr~~g 338 (416)
T PF04710_consen 278 PQCPVGLNTLVFPSKSRKDVPDERQPWVYLNCGHVHGYH---NWGQDSDRDPRSRTCPLCRQVG 338 (416)
T ss_dssp ----------------------------------------------------------------
T ss_pred CCCCcCCCccccccccccccccccCceeeccccceeeec---ccccccccccccccCCCccccC
Confidence 467777766542 1234557799987643 4633 245899999753
No 145
>TIGR00622 ssl1 transcription factor ssl1. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=49.17 E-value=18 Score=30.05 Aligned_cols=45 Identities=20% Similarity=0.339 Sum_probs=31.8
Q ss_pred cccccccccccccC----------CccEEeC-CCCccChhhHHHHHhcCCCCCCcc
Q 021283 231 DAECAICKENLLVG----------DKMQELP-CKHTFHPPCLKPWLDEHNSCPICR 275 (314)
Q Consensus 231 ~~~C~ICLe~~~~~----------~~v~~LP-CgH~FH~~CI~~WL~~~~tCPvCR 275 (314)
...|--|+..|... .....-+ |++.||.+|=.-+-..=..||-|-
T Consensus 55 ~~~C~~C~~~f~~~~~~~~~~~~~~~~y~C~~C~~~FC~dCD~fiHe~Lh~CPGC~ 110 (112)
T TIGR00622 55 SRFCFGCQGPFPKPPVSPFDELKDSHRYVCAVCKNVFCVDCDVFVHESLHCCPGCI 110 (112)
T ss_pred CCcccCcCCCCCCcccccccccccccceeCCCCCCccccccchhhhhhccCCcCCC
Confidence 34699999988532 1123345 999999999776655556799995
No 146
>PF13717 zinc_ribbon_4: zinc-ribbon domain
Probab=48.17 E-value=10 Score=24.78 Aligned_cols=25 Identities=24% Similarity=0.650 Sum_probs=15.1
Q ss_pred cccccccccccCCc-------cEEeC-CCCccC
Q 021283 233 ECAICKENLLVGDK-------MQELP-CKHTFH 257 (314)
Q Consensus 233 ~C~ICLe~~~~~~~-------v~~LP-CgH~FH 257 (314)
+|+=|.-.|..++. .+.-+ |+|.|+
T Consensus 4 ~Cp~C~~~y~i~d~~ip~~g~~v~C~~C~~~f~ 36 (36)
T PF13717_consen 4 TCPNCQAKYEIDDEKIPPKGRKVRCSKCGHVFF 36 (36)
T ss_pred ECCCCCCEEeCCHHHCCCCCcEEECCCCCCEeC
Confidence 68888877765442 22233 777774
No 147
>smart00249 PHD PHD zinc finger. The plant homeodomain (PHD) finger is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in epigenetics and chromatin-mediated transcriptional regulation. The PHD finger binds two zinc ions using the so-called 'cross-brace' motif and is thus structurally related to the COG3813 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=44.69 E-value=30 Score=26.65 Aligned_cols=57 Identities=25% Similarity=0.427 Sum_probs=35.6
Q ss_pred cccccccccccCCc-cEEeCCCCccChhhHHHHHhcCCCCCCcccccCCCCcchhhHHHH
Q 021283 233 ECAICKENLLVGDK-MQELPCKHTFHPPCLKPWLDEHNSCPICRHELQTDDHAYESWKER 291 (314)
Q Consensus 233 ~C~ICLe~~~~~~~-v~~LPCgH~FH~~CI~~WL~~~~tCPvCR~~l~~~d~~~~~~~~r 291 (314)
.|--|-.++-++.. ..+..=.|.||..|....| +..||.|-..+......+.....+
T Consensus 7 nCECCDrDLpp~s~dA~ICtfEcTFCadCae~~l--~g~CPnCGGelv~RP~RPaa~L~r 64 (84)
T COG3813 7 NCECCDRDLPPDSTDARICTFECTFCADCAENRL--HGLCPNCGGELVARPIRPAAKLAR 64 (84)
T ss_pred CCcccCCCCCCCCCceeEEEEeeehhHhHHHHhh--cCcCCCCCchhhcCcCChHHHHhh
Confidence 45556666644332 2222234889999998754 689999998887655544444433
No 149
>KOG2113 consensus Predicted RNA binding protein, contains KH domain [General function prediction only]
Probab=43.33 E-value=16 Score=35.53 Aligned_cols=47 Identities=11% Similarity=-0.053 Sum_probs=35.4
Q ss_pred hcCCcccccccccccccCCccEEeCCCC-ccChhhHHHHHhcCCCCCCccccc
Q 021283 227 KLGHDAECAICKENLLVGDKMQELPCKH-TFHPPCLKPWLDEHNSCPICRHEL 278 (314)
Q Consensus 227 ~~~~~~~C~ICLe~~~~~~~v~~LPCgH-~FH~~CI~~WL~~~~tCPvCR~~l 278 (314)
.+-...+|.+|-+.+. .....||+| +||..|.. +.-..+||+|.+.+
T Consensus 339 ~~~s~~~~~~~~~~~~---st~~~~~~~n~~~~~~a~--~s~~~~~~~c~~~~ 386 (394)
T KOG2113|consen 339 GLMSSLKGTSAGFGLL---STIWSGGNMNLSPGSLAS--ASASPTSSTCDHND 386 (394)
T ss_pred cchhhcccccccCcee---eeEeecCCcccChhhhhh--cccCCccccccccc
Confidence 3445678999988763 356678998 58999987 66788999997643
No 150
>PF00628 PHD: PHD-finger; InterPro: IPR019787 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the PHD (homeodomain) zinc finger domain [,], which is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in chromatin-mediated transcriptional regulation. The PHD finger motif is reminiscent of, but distinct from the C3HC4 type RING finger. The function of this domain is not yet known but in analogy with the LIM domain it could be involved in protein-protein interaction and be important for the assembly or activity of multicomponent complexes involved in transcriptional activation or repression. Alternatively, the interactions could be intra-molecular and be important in maintaining the structural integrity of the protein. In similarity to the RING finger and the LIM domain, the PHD finger is thought to bind two zinc ions. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0005515 protein binding; PDB: 3ZVY_A 2LGG_A 3SOW_A 3SOU_B 3ASL_A 3ASK_A 3ZVZ_B 3T6R_A 2LGK_A 3SOX_B ....
Probab=40.52 E-value=12 Score=25.68 Aligned_cols=42 Identities=26% Similarity=0.610 Sum_probs=27.2
Q ss_pred cccccccccccCCccEEe-CCCCccChhhHHHHHh------cCCCCCCcc
Q 021283 233 ECAICKENLLVGDKMQEL-PCKHTFHPPCLKPWLD------EHNSCPICR 275 (314)
Q Consensus 233 ~C~ICLe~~~~~~~v~~L-PCgH~FH~~CI~~WL~------~~~tCPvCR 275 (314)
.|.||...-.. ..++.- .|+..||..|+..-.. ..-.||.|+
T Consensus 1 ~C~vC~~~~~~-~~~i~C~~C~~~~H~~C~~~~~~~~~~~~~~w~C~~C~ 49 (51)
T PF00628_consen 1 YCPVCGQSDDD-GDMIQCDSCNRWYHQECVGPPEKAEEIPSGDWYCPNCR 49 (51)
T ss_dssp EBTTTTSSCTT-SSEEEBSTTSCEEETTTSTSSHSHHSHHSSSBSSHHHH
T ss_pred eCcCCCCcCCC-CCeEEcCCCChhhCcccCCCChhhccCCCCcEECcCCc
Confidence 38899884333 334443 4999999999866433 133688775
No 151
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=40.26 E-value=15 Score=34.07 Aligned_cols=24 Identities=17% Similarity=0.473 Sum_probs=18.0
Q ss_pred hcCCCCCCcccccCCCCcchhhHH
Q 021283 266 DEHNSCPICRHELQTDDHAYESWK 289 (314)
Q Consensus 266 ~~~~tCPvCR~~l~~~d~~~~~~~ 289 (314)
+.-..||+|++.-.+.+++.+..|
T Consensus 206 RNAPiCPlCK~KsRSrnpKk~k~k 229 (230)
T PF10146_consen 206 RNAPICPLCKAKSRSRNPKKPKRK 229 (230)
T ss_pred cCCCCCcccccccccCCCCCcccC
Confidence 456799999998888777665443
No 152
>smart00064 FYVE Protein present in Fab1, YOTB, Vac1, and EEA1. The FYVE zinc finger is named after four proteins where it was first found: Fab1, YOTB/ZK632.12, Vac1, and EEA1. The FYVE finger has been shown to bind two Zn2+ ions. The FYVE finger has eight potential zinc coordinating cysteine positions. The FYVE finger is structurally related to the PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=39.51 E-value=18 Score=33.71 Aligned_cols=27 Identities=22% Similarity=0.522 Sum_probs=20.6
Q ss_pred ccccccccccccCCccEEeCCCCccCh
Q 021283 232 AECAICKENLLVGDKMQELPCKHTFHP 258 (314)
Q Consensus 232 ~~C~ICLe~~~~~~~v~~LPCgH~FH~ 258 (314)
..||||...+...+.....+++|.|..
T Consensus 3 ~~CP~C~~~l~~~~~~~~C~~~h~fd~ 29 (272)
T PRK11088 3 YQCPLCHQPLTLEENSWICPQNHQFDC 29 (272)
T ss_pred ccCCCCCcchhcCCCEEEcCCCCCCcc
Confidence 579999999976555556667899854
No 154
>PF11023 DUF2614: Protein of unknown function (DUF2614); InterPro: IPR020912 This entry describes proteins of unknown function, which are thought to be membrane proteins.; GO: 0005887 integral to plasma membrane
Probab=38.01 E-value=26 Score=29.11 Aligned_cols=19 Identities=26% Similarity=0.571 Sum_probs=14.0
Q ss_pred HHhcCCCCCCcccccCCCC
Q 021283 264 WLDEHNSCPICRHELQTDD 282 (314)
Q Consensus 264 WL~~~~tCPvCR~~l~~~d 282 (314)
-|.+...|+.|++++.-+.
T Consensus 81 mLGr~D~CM~C~~pLTLd~ 99 (114)
T PF11023_consen 81 MLGRVDACMHCKEPLTLDP 99 (114)
T ss_pred hhchhhccCcCCCcCccCc
Confidence 3556668999999996443
No 155
>PF05605 zf-Di19: Drought induced 19 protein (Di19), zinc-binding; InterPro: IPR008598 This entry consists of several drought induced 19 (Di19) like and RING finger 114 proteins. Di19 has been found to be strongly expressed in both the roots and leaves of Arabidopsis thaliana during progressive drought [], whilst RING finger proteins are thought to play a role in spermatogenesis. The precise function is unknown.
Probab=37.78 E-value=12 Score=26.39 Aligned_cols=37 Identities=24% Similarity=0.640 Sum_probs=20.2
Q ss_pred cccccccccccccCCccEEeCCCCccChhhHHHHHh--cCCCCCCcccc
Q 021283 231 DAECAICKENLLVGDKMQELPCKHTFHPPCLKPWLD--EHNSCPICRHE 277 (314)
Q Consensus 231 ~~~C~ICLe~~~~~~~v~~LPCgH~FH~~CI~~WL~--~~~tCPvCR~~ 277 (314)
.+.||.|-+.|... .| +.| |....-. ..-.||+|...
T Consensus 2 ~f~CP~C~~~~~~~----~L-~~H-----~~~~H~~~~~~v~CPiC~~~ 40 (54)
T PF05605_consen 2 SFTCPYCGKGFSES----SL-VEH-----CEDEHRSESKNVVCPICSSR 40 (54)
T ss_pred CcCCCCCCCccCHH----HH-HHH-----HHhHCcCCCCCccCCCchhh
Confidence 46899999865321 12 222 2232222 23479999763
No 156
>KOG1245 consensus Chromatin remodeling complex WSTF-ISWI, large subunit (contains heterochromatin localization, PHD and BROMO domains) [Chromatin structure and dynamics]
Probab=36.26 E-value=12 Score=43.23 Aligned_cols=49 Identities=31% Similarity=0.600 Sum_probs=37.9
Q ss_pred CcccccccccccccCCccEEeCCCCccChhhHHHHHhcCC----CCCCccccc
Q 021283 230 HDAECAICKENLLVGDKMQELPCKHTFHPPCLKPWLDEHN----SCPICRHEL 278 (314)
Q Consensus 230 ~~~~C~ICLe~~~~~~~v~~LPCgH~FH~~CI~~WL~~~~----tCPvCR~~l 278 (314)
....|.||.........+...-|.-.||..|+++-+..-. .||-||..-
T Consensus 1107 ~~~~c~~cr~k~~~~~m~lc~~c~~~~h~~C~rp~~~~~~~~dW~C~~c~~e~ 1159 (1404)
T KOG1245|consen 1107 VNALCKVCRRKKQDEKMLLCDECLSGFHLFCLRPALSSVPPGDWMCPSCRKEH 1159 (1404)
T ss_pred chhhhhhhhhcccchhhhhhHhhhhhHHHHhhhhhhccCCcCCccCCccchhh
Confidence 3578999999876545555555889999999999887533 799998754
No 157
>smart00647 IBR In Between Ring fingers. the domains occurs between pairs og RING fingers
Probab=35.21 E-value=12 Score=26.42 Aligned_cols=20 Identities=30% Similarity=0.712 Sum_probs=15.8
Q ss_pred CccEEeC-CCCccChhhHHHH
Q 021283 245 DKMQELP-CKHTFHPPCLKPW 264 (314)
Q Consensus 245 ~~v~~LP-CgH~FH~~CI~~W 264 (314)
...+..| |+|.||..|...|
T Consensus 38 ~~~v~C~~C~~~fC~~C~~~~ 58 (64)
T smart00647 38 CNRVTCPKCGFSFCFRCKVPW 58 (64)
T ss_pred CCeeECCCCCCeECCCCCCcC
Confidence 4456664 9999999998888
No 158
>COG4068 Uncharacterized protein containing a Zn-ribbon [Function unknown]
Probab=34.51 E-value=61 Score=23.94 Aligned_cols=19 Identities=21% Similarity=0.709 Sum_probs=14.3
Q ss_pred cCCCCCCcccccCCCCcch
Q 021283 267 EHNSCPICRHELQTDDHAY 285 (314)
Q Consensus 267 ~~~tCPvCR~~l~~~d~~~ 285 (314)
-|..||+|-+.++.+..--
T Consensus 7 PH~HC~VCg~aIp~de~~C 25 (64)
T COG4068 7 PHRHCVVCGKAIPPDEQVC 25 (64)
T ss_pred CCccccccCCcCCCccchH
Confidence 3668999999998766543
No 159
>PF00412 LIM: LIM domain; InterPro: IPR001781 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents LIM-type zinc finger (Znf) domains. LIM domains coordinate one or more zinc atoms, and are named after the three proteins (LIN-11, Isl1 and MEC-3) in which they were first found. They consist of two zinc-binding motifs that resemble GATA-like Znf's, however the residues holding the zinc atom(s) are variable, involving Cys, His, Asp or Glu residues. LIM domains are involved in proteins with differing functions, including gene expression, and cytoskeleton organisation and development [, ]. Protein containing LIM Znf domains include: Caenorhabditis elegans mec-3; a protein required for the differentiation of the set of six touch receptor neurons in this nematode. C. elegans. lin-11; a protein required for the asymmetric division of vulval blast cells. Vertebrate insulin gene enhancer binding protein isl-1. Isl-1 binds to one of the two cis-acting protein-binding domains of the insulin gene. Vertebrate homeobox proteins lim-1, lim-2 (lim-5) and lim3. Vertebrate lmx-1, which acts as a transcriptional activator by binding to the FLAT element; a beta-cell-specific transcriptional enhancer found in the insulin gene. Mammalian LH-2, a transcriptional regulatory protein involved in the control of cell differentiation in developing lymphoid and neural cell types. Drosophila melanogaster (Fruit fly) protein apterous, required for the normal development of the wing and halter imaginal discs. Vertebrate protein kinases LIMK-1 and LIMK-2. Mammalian rhombotins. Rhombotin 1 (RBTN1 or TTG-1) and rhombotin-2 (RBTN2 or TTG-2) are proteins of about 160 amino acids whose genes are disrupted by chromosomal translocations in T-cell leukemia. Mammalian and avian cysteine-rich protein (CRP), a 192 amino-acid protein of unknown function. Seems to interact with zyxin. Mammalian cysteine-rich intestinal protein (CRIP), a small protein which seems to have a role in zinc absorption and may function as an intracellular zinc transport protein. Vertebrate paxillin, a cytoskeletal focal adhesion protein. Mus musculus (Mouse) testin which should not be confused with rat testin which is a thiol protease homologue (see IPR000169 from INTERPRO). Helianthus annuus (Common sunflower) pollen specific protein SF3. Chicken zyxin. Zyxin is a low-abundance adhesion plaque protein which has been shown to interact with CRP. Yeast protein LRG1 which is involved in sporulation []. Saccharomyces cerevisiae (Baker's yeast) rho-type GTPase activating protein RGA1/DBM1. C. elegans homeobox protein ceh-14. C. elegans homeobox protein unc-97. S. cerevisiae hypothetical protein YKR090w. C. elegans hypothetical proteins C28H8.6. These proteins generally contain two tandem copies of the LIM domain in their N-terminal section. Zyxin and paxillin are exceptions in that they contain respectively three and four LIM domains at their C-terminal extremity. In apterous, isl-1, LH-2, lin-11, lim-1 to lim-3, lmx-1 and ceh-14 and mec-3 there is a homeobox domain some 50 to 95 amino acids after the LIM domains. LIM domains contain seven conserved cysteine residues and a histidine. The arrangement followed by these conserved residues is: C-x(2)-C-x(16,23)-H-x(2)-[CH]-x(2)-C-x(2)-C-x(16,21)-C-x(2,3)-[CHD] LIM domains bind two zinc ions []. LIM does not bind DNA, rather it seems to act as an interface for protein-protein interaction. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 2CO8_A 2EGQ_A 2CUR_A 3IXE_B 1CTL_A 1B8T_A 1X62_A 2DFY_C 1IML_A 2CUQ_A ....
Probab=34.46 E-value=27 Score=24.20 Aligned_cols=40 Identities=25% Similarity=0.595 Sum_probs=25.5
Q ss_pred ccccccccccCCccEEeCCCCccChhhHHHHHhcCCCCCCcccccCCCC
Q 021283 234 CAICKENLLVGDKMQELPCKHTFHPPCLKPWLDEHNSCPICRHELQTDD 282 (314)
Q Consensus 234 C~ICLe~~~~~~~v~~LPCgH~FH~~CI~~WL~~~~tCPvCR~~l~~~d 282 (314)
|..|-..+.... .+...-+..||..| ..|-.|+.+|...+
T Consensus 1 C~~C~~~I~~~~-~~~~~~~~~~H~~C--------f~C~~C~~~l~~~~ 40 (58)
T PF00412_consen 1 CARCGKPIYGTE-IVIKAMGKFWHPEC--------FKCSKCGKPLNDGD 40 (58)
T ss_dssp BTTTSSBESSSS-EEEEETTEEEETTT--------SBETTTTCBTTTSS
T ss_pred CCCCCCCccCcE-EEEEeCCcEEEccc--------cccCCCCCccCCCe
Confidence 666777765333 33234677888777 46888888776544
No 160
>KOG4185 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=34.44 E-value=7.7 Score=36.60 Aligned_cols=47 Identities=26% Similarity=0.502 Sum_probs=36.8
Q ss_pred cccccccccccccCC---ccEEeC--------CCCccChhhHHHHHhcC-CCCCCcccc
Q 021283 231 DAECAICKENLLVGD---KMQELP--------CKHTFHPPCLKPWLDEH-NSCPICRHE 277 (314)
Q Consensus 231 ~~~C~ICLe~~~~~~---~v~~LP--------CgH~FH~~CI~~WL~~~-~tCPvCR~~ 277 (314)
...|.||...+...+ .+..+. |+|..|..|+..-+... ..||.||..
T Consensus 207 ~~~c~ic~~~~~~n~~~~~p~vl~~~~~~~~~c~htlc~~c~~~~l~~~~~~cp~~~~~ 265 (296)
T KOG4185|consen 207 EKLCEICERIYSENDEKLAPLVLSLSRLKEKIEGHTLCKECIDTILLQAGIKCPFCTWS 265 (296)
T ss_pred HHHHHHHHHHhhccccccchhHHHHHHHHHHHHHHHHHhcchHHHHHHhhhcCCcccce
Confidence 457999999987322 355566 99999999999987654 589999874
No 161
>KOG2169 consensus Zn-finger transcription factor [Transcription]
Probab=34.32 E-value=33 Score=36.47 Aligned_cols=49 Identities=16% Similarity=0.482 Sum_probs=30.4
Q ss_pred cccccccccccccCCccEEeCCCCccCh--hhHHH-HHhc----CC--CCCCcccccCCCCcchh
Q 021283 231 DAECAICKENLLVGDKMQELPCKHTFHP--PCLKP-WLDE----HN--SCPICRHELQTDDHAYE 286 (314)
Q Consensus 231 ~~~C~ICLe~~~~~~~v~~LPCgH~FH~--~CI~~-WL~~----~~--tCPvCR~~l~~~d~~~~ 286 (314)
...|+|+.-.+ .+||.+..|+ .|.+. |+.. .. .||+|......++...+
T Consensus 306 SL~CPl~~~Rm-------~~P~r~~~CkHlQcFD~~~~lq~n~~~pTW~CPVC~~~~~~e~l~iD 363 (636)
T KOG2169|consen 306 SLNCPLSKMRM-------SLPARGHTCKHLQCFDALSYLQMNEQKPTWRCPVCQKAAPFEGLIID 363 (636)
T ss_pred EecCCccccee-------ecCCcccccccceecchhhhHHhccCCCeeeCccCCccccccchhhh
Confidence 35677766654 4677766666 67765 4332 11 69999887766654433
No 162
>COG5627 MMS21 DNA repair protein MMS21 [DNA replication, recombination, and repair]
Probab=32.89 E-value=33 Score=32.17 Aligned_cols=50 Identities=18% Similarity=0.317 Sum_probs=34.6
Q ss_pred cccccccccccccCCccEEeCCCCccChhhHHHHHhcCC--CCCC--cccccCCCC
Q 021283 231 DAECAICKENLLVGDKMQELPCKHTFHPPCLKPWLDEHN--SCPI--CRHELQTDD 282 (314)
Q Consensus 231 ~~~C~ICLe~~~~~~~v~~LPCgH~FH~~CI~~WL~~~~--tCPv--CR~~l~~~d 282 (314)
+..|||-+..+. ..+....|+|.|-.+-|...|.... .||. |-+.+.-++
T Consensus 189 ~nrCpitl~p~~--~pils~kcnh~~e~D~I~~~lq~~~trvcp~~~Csq~~~~~~ 242 (275)
T COG5627 189 SNRCPITLNPDF--YPILSSKCNHKPEMDLINKKLQVECTRVCPRLICSQKEVVDP 242 (275)
T ss_pred cccCCcccCcch--hHHHHhhhcccccHHHHHHHhcCCceeecchhhcchheeccc
Confidence 568999888763 2344556999999999999998544 5663 544443333
No 163
>PRK05978 hypothetical protein; Provisional
Probab=32.70 E-value=25 Score=30.49 Aligned_cols=24 Identities=17% Similarity=0.573 Sum_probs=18.9
Q ss_pred CccChhhHHHHHhcCCCCCCcccccCCCC
Q 021283 254 HTFHPPCLKPWLDEHNSCPICRHELQTDD 282 (314)
Q Consensus 254 H~FH~~CI~~WL~~~~tCPvCR~~l~~~d 282 (314)
|+|+ .+|+.+..||.|-.++...+
T Consensus 43 ~LF~-----g~Lkv~~~C~~CG~~~~~~~ 66 (148)
T PRK05978 43 KLFR-----AFLKPVDHCAACGEDFTHHR 66 (148)
T ss_pred cccc-----cccccCCCccccCCccccCC
Confidence 6675 68899999999988886543
No 164
>TIGR03349 IV_VI_DotU type IV / VI secretion system protein, DotU family. At least two families of proteins, often encoded by adjacent genes, show sequence similarity due to homology between type IV secretion systems and type VI secretion systems. One is the IcmF family (TIGR03348). The other is the family described by this model. Members include DotU from the Legionella pneumophila type IV secretion system. Many of the members of this protein family from type VI secretion systems have an additional C-terminal domain with OmpA/MotB homology.
Probab=32.46 E-value=3.5e+02 Score=23.85 Aligned_cols=56 Identities=21% Similarity=0.402 Sum_probs=39.4
Q ss_pred hhhHHHHHHHH-HHHHHhcCCCCCchhhH-------------HhHHHHHHHhhhccCcchhhhHHHHHHH
Q 021283 45 TLRNQFYSVVC-RVATILKTRYTAPGFWL-------------AGLRLFELAESLVSDPSQKQHLKACIAK 100 (314)
Q Consensus 45 ~~~~~~~~~v~-~~~~~l~~~~~~~~~w~-------------~gl~~f~~~~~~~~~~~~~~~~~~~~~~ 100 (314)
.++...|..++ -==+||+|+...-+-|. +|-..|+....+..+|..+-.+-.++..
T Consensus 41 ~i~~a~Yalca~lDE~vl~~~w~~~~~W~~~~L~~~ff~~~~gGe~ff~~l~~l~~~p~~~~~lLev~~~ 110 (183)
T TIGR03349 41 DIEAARYALCALLDEAVLNTPWGGRSVWSRQPLLSRFHGETWGGEKFFERLERLLADPAEHLDLLELYYL 110 (183)
T ss_pred HHHhhhHHHHHHHHHHHHcCCCCCcchhhhCcHHHHHcCCCccHHHHHHHHHHHHhCchhhhhHHHHHHH
Confidence 36666666444 44568898877777798 7888999998888888766555554443
No 165
>PF14569 zf-UDP: Zinc-binding RING-finger; PDB: 1WEO_A.
Probab=32.36 E-value=45 Score=25.97 Aligned_cols=49 Identities=18% Similarity=0.519 Sum_probs=20.2
Q ss_pred cccccccccccccC---Cc-cEEeCCCCccChhhHHHHHh-cCCCCCCcccccC
Q 021283 231 DAECAICKENLLVG---DK-MQELPCKHTFHPPCLKPWLD-EHNSCPICRHELQ 279 (314)
Q Consensus 231 ~~~C~ICLe~~~~~---~~-v~~LPCgH~FH~~CI~~WL~-~~~tCPvCR~~l~ 279 (314)
...|-||-+.+... +. +...-|+--.|+.|..-=.+ .+..||-|+++..
T Consensus 9 ~qiCqiCGD~VGl~~~Ge~FVAC~eC~fPvCr~CyEYErkeg~q~CpqCkt~yk 62 (80)
T PF14569_consen 9 GQICQICGDDVGLTENGEVFVACHECAFPVCRPCYEYERKEGNQVCPQCKTRYK 62 (80)
T ss_dssp S-B-SSS--B--B-SSSSB--S-SSS-----HHHHHHHHHTS-SB-TTT--B--
T ss_pred CcccccccCccccCCCCCEEEEEcccCCccchhHHHHHhhcCcccccccCCCcc
Confidence 46899999887432 22 22233777889999876555 5678999997664
No 166
>PF06676 DUF1178: Protein of unknown function (DUF1178); InterPro: IPR009562 This family consists of several hypothetical bacterial proteins of around 150 residues in length. The function of this family is unknown.
Probab=31.82 E-value=17 Score=31.59 Aligned_cols=21 Identities=33% Similarity=0.906 Sum_probs=14.7
Q ss_pred CCCccChhhHHHHHhcC-----------CCCCCcccc
Q 021283 252 CKHTFHPPCLKPWLDEH-----------NSCPICRHE 277 (314)
Q Consensus 252 CgH~FH~~CI~~WL~~~-----------~tCPvCR~~ 277 (314)
|+|.|- .||... -+||+|-..
T Consensus 10 ~gH~FE-----gWF~ss~~fd~Q~~~glv~CP~Cgs~ 41 (148)
T PF06676_consen 10 NGHEFE-----GWFRSSAAFDRQQARGLVSCPVCGST 41 (148)
T ss_pred CCCccc-----eecCCHHHHHHHHHcCCccCCCCCCC
Confidence 578885 588732 279999753
No 167
>PLN02189 cellulose synthase
Probab=31.49 E-value=37 Score=38.05 Aligned_cols=49 Identities=22% Similarity=0.591 Sum_probs=34.5
Q ss_pred ccccccccccccc---CCccEEeC-CCCccChhhHHHHHh-cCCCCCCcccccC
Q 021283 231 DAECAICKENLLV---GDKMQELP-CKHTFHPPCLKPWLD-EHNSCPICRHELQ 279 (314)
Q Consensus 231 ~~~C~ICLe~~~~---~~~v~~LP-CgH~FH~~CI~~WL~-~~~tCPvCR~~l~ 279 (314)
...|.||-+.+.. |+.-+-.. |+--.|+.|..-=-+ .+..||.|++...
T Consensus 34 ~~~C~iCgd~vg~~~~g~~fvaC~~C~fpvCr~Cyeyer~eg~q~CpqCkt~Y~ 87 (1040)
T PLN02189 34 GQVCEICGDEIGLTVDGDLFVACNECGFPVCRPCYEYERREGTQNCPQCKTRYK 87 (1040)
T ss_pred CccccccccccCcCCCCCEEEeeccCCCccccchhhhhhhcCCccCcccCCchh
Confidence 4589999999753 33333334 888899999854333 5668999998775
No 168
>KOG3799 consensus Rab3 effector RIM1 and related proteins, contain Rab3a binding domain [Intracellular trafficking, secretion, and vesicular transport]
Probab=31.46 E-value=12 Score=32.14 Aligned_cols=43 Identities=35% Similarity=0.839 Sum_probs=24.8
Q ss_pred cCCcccccccccccccCCccEEeCCCCc-------cChhhHHHH-HhcCC---CCCCccc
Q 021283 228 LGHDAECAICKENLLVGDKMQELPCKHT-------FHPPCLKPW-LDEHN---SCPICRH 276 (314)
Q Consensus 228 ~~~~~~C~ICLe~~~~~~~v~~LPCgH~-------FH~~CI~~W-L~~~~---tCPvCR~ 276 (314)
..++.+|-||+..-.. + .|||. ||..|-... |+.+. .|-+|+.
T Consensus 62 v~ddatC~IC~KTKFA-D-----G~GH~C~YCq~r~CARCGGrv~lrsNKv~wvcnlc~k 115 (169)
T KOG3799|consen 62 VGDDATCGICHKTKFA-D-----GCGHNCSYCQTRFCARCGGRVSLRSNKVMWVCNLCRK 115 (169)
T ss_pred cCcCcchhhhhhcccc-c-----ccCcccchhhhhHHHhcCCeeeeccCceEEeccCCcH
Confidence 3568899999986432 1 25554 555554333 22222 5888874
No 169
>PF08158 NUC130_3NT: NUC130/3NT domain; InterPro: IPR012977 This N-terminal domain is found in a novel nucleolar protein family defined by NUC130/133 [].
Probab=31.18 E-value=87 Score=22.32 Aligned_cols=35 Identities=23% Similarity=0.443 Sum_probs=26.5
Q ss_pred HHHHHHHHHHhhhCCCCChhhhHHHHHHHHHHHHHhcCC
Q 021283 26 DSVANINSLLRDRFPAASPTLRNQFYSVVCRVATILKTR 64 (314)
Q Consensus 26 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~l~~~ 64 (314)
+--..|..+|+.|+..-.|.+|+.|- ++-.+|+.+
T Consensus 15 ~Fp~~L~~lL~~~~~~L~p~lR~~lv----~aLiLLRnK 49 (52)
T PF08158_consen 15 DFPQELIDLLRNHHTVLDPDLRMKLV----KALILLRNK 49 (52)
T ss_pred HHHHHHHHHHHhccccCCHHHHHHHH----HHHHHHHcc
Confidence 34567889999999999999999764 455555554
No 170
>PF00956 NAP: Nucleosome assembly protein (NAP); InterPro: IPR002164 It is thought that NAPs act as histone chaperones, shuttling both core and linker histones from their site of synthesis in the cytoplasm to the nucleus. The proteins may be involved in regulating gene expression and therefore cellular differentiation [, ]. The centrosomal protein c-Nap1, also known as Cep250, has been implicated in the cell-cycle-regulated cohesion of microtubule-organizing centres. This 281 kDa protein consists mainly of domains predicted to form coiled coil structures. The C-terminal region defines a novel histone-binding domain that is responsible for targeting CNAP1, and possibly condensin, to mitotic chromosomes []. During interphase, C-Nap1 localizes to the proximal ends of both parental centrioles, but it dissociates from these structures at the onset of mitosis. Re-association with centrioles then occurs in late telophase or at the very beginning of G1 phase, when daughter cells are still connected by post-mitotic bridges. Electron microscopic studies performed on isolated centrosomes suggest that a proteinaceous linker connects parental centrioles and C-Nap1 may be part of a linker structure that assures the cohesion of duplicated centrosomes during interphase, but that is dismantled upon centrosome separation at the onset of mitosis []. ; GO: 0006334 nucleosome assembly, 0005634 nucleus; PDB: 2E50_Q 2Z2R_A 2AYU_A 3Q66_A 3C9B_A 3Q68_B 3Q33_B 2ZD7_B 3DM7_A 3C9D_A ....
Probab=31.18 E-value=2.1e+02 Score=26.26 Aligned_cols=54 Identities=30% Similarity=0.562 Sum_probs=29.8
Q ss_pred HHHHHHHHhh-hhhHHHHHHHHHHHHhhhCCCCChhhhHHHHHHHHHHHHHhcCCCC---------------CchhhHHh
Q 021283 11 LEELQKQLGK-KLRFEDSVANINSLLRDRFPAASPTLRNQFYSVVCRVATILKTRYT---------------APGFWLAG 74 (314)
Q Consensus 11 l~~~~~~l~~-k~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~l~~~~~---------------~~~~w~~g 74 (314)
|+.+|++|.+ ...|.+++..|..-.+. +.+++|-- |...|-..+-. -|+||+..
T Consensus 7 L~~~q~~~~~l~~~~~~e~~~le~ky~~--------~~~pl~~k--R~~ii~g~~~~~~~~~~~~~~~~~~gIP~FW~~v 76 (244)
T PF00956_consen 7 LKKLQEELDELEKEFEEEIHELERKYNK--------LYKPLYEK--RREIINGKREPTEIEWEERQEEKPKGIPGFWLTV 76 (244)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHH--HHHHHTTSS---HHHH-----SSSTTSTTHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHhHHHHH--HHHHhccccccccccccchhhccccCCCCccccc
Confidence 4445555544 34466666665555444 56666654 66555553311 49999944
No 171
>cd00350 rubredoxin_like Rubredoxin_like; nonheme iron binding domain containing a [Fe(SCys)4] center. The family includes rubredoxins, a small electron transfer protein, and a slightly smaller modular rubredoxin domain present in rubrerythrin and nigerythrin and detected either N- or C-terminal to such proteins as flavin reductase, NAD(P)H-nitrite reductase, and ferredoxin-thioredoxin reductase. In rubredoxin, the iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), but iron can also be replaced by cobalt, nickel or zinc and believed to be involved in electron transfer. Rubrerythrins and nigerythrins are small homodimeric proteins, generally consisting of 2 domains: a rubredoxin domain C-terminal to a non-sulfur, oxo-bridged diiron site in the N-terminal rubrerythrin domain. Rubrerythrins and nigerythrins have putative peroxide activity.
Probab=30.72 E-value=29 Score=22.08 Aligned_cols=9 Identities=33% Similarity=0.970 Sum_probs=6.5
Q ss_pred CCCCCCccc
Q 021283 268 HNSCPICRH 276 (314)
Q Consensus 268 ~~tCPvCR~ 276 (314)
...||+|..
T Consensus 17 ~~~CP~Cg~ 25 (33)
T cd00350 17 PWVCPVCGA 25 (33)
T ss_pred CCcCcCCCC
Confidence 337999965
No 172
>TIGR01562 FdhE formate dehydrogenase accessory protein FdhE. The only sequence scoring between trusted and noise is that from Aquifex aeolicus, which shows certain structural differences from the proteobacterial forms in the alignment. However it is notable that A. aeolicus also has a sequence scoring above trusted to the alpha subunit of formate dehydrogenase (TIGR01553).
Probab=30.40 E-value=13 Score=36.08 Aligned_cols=45 Identities=13% Similarity=0.333 Sum_probs=26.5
Q ss_pred cccccccccccccCCccEEe--C--CCCccChhhHHHHHhcCCCCCCccc
Q 021283 231 DAECAICKENLLVGDKMQEL--P--CKHTFHPPCLKPWLDEHNSCPICRH 276 (314)
Q Consensus 231 ~~~C~ICLe~~~~~~~v~~L--P--CgH~FH~~CI~~WL~~~~tCPvCR~ 276 (314)
-..||||-..-.... ++.- . =.|.+|.-|-..|--....||.|-.
T Consensus 184 ~~~CPvCGs~P~~s~-~~~~~~~~G~RyL~CslC~teW~~~R~~C~~Cg~ 232 (305)
T TIGR01562 184 RTLCPACGSPPVASM-VRQGGKETGLRYLSCSLCATEWHYVRVKCSHCEE 232 (305)
T ss_pred CCcCCCCCChhhhhh-hcccCCCCCceEEEcCCCCCcccccCccCCCCCC
Confidence 348999976632110 1110 1 1245666777788667778888865
No 173
>COG3492 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=30.36 E-value=22 Score=28.48 Aligned_cols=38 Identities=21% Similarity=0.543 Sum_probs=21.2
Q ss_pred ccChhhHHHHHhcCC---CCCCccccc--CCCCcchhhHHHHH
Q 021283 255 TFHPPCLKPWLDEHN---SCPICRHEL--QTDDHAYESWKERE 292 (314)
Q Consensus 255 ~FH~~CI~~WL~~~~---tCPvCR~~l--~~~d~~~~~~~~r~ 292 (314)
-||+.|+..|++.-. --|+-+..- ..-.-+|++||..-
T Consensus 42 gFCRNCLs~Wy~eaae~~gv~lskd~aRE~VyGMpy~eWka~~ 84 (104)
T COG3492 42 GFCRNCLSNWYREAAEAQGVDLSKDQAREIVYGMPYAEWKAQH 84 (104)
T ss_pred HHHHHHHHHHHHHHHhccCCCccHHHHHHHHhCCCHHHHHHhc
Confidence 399999999988322 223322110 01223578887654
No 174
>KOG1729 consensus FYVE finger containing protein [General function prediction only]
Probab=29.85 E-value=12 Score=35.87 Aligned_cols=39 Identities=28% Similarity=0.501 Sum_probs=29.5
Q ss_pred cccccccccccccCCccEEeCCCCccChhhHHHHHhcCC
Q 021283 231 DAECAICKENLLVGDKMQELPCKHTFHPPCLKPWLDEHN 269 (314)
Q Consensus 231 ~~~C~ICLe~~~~~~~v~~LPCgH~FH~~CI~~WL~~~~ 269 (314)
...|.||++.|..+......-|.-+||..|+..|++...
T Consensus 214 ~rvC~~CF~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (288)
T KOG1729|consen 214 IRVCDICFEELEKGARGDREDSLPVFHGKCYPNWLTTGA 252 (288)
T ss_pred ceecHHHHHHHhcccccchhhcccccccccccccccccc
Confidence 348999999997544444455666999999999998544
No 175
>smart00531 TFIIE Transcription initiation factor IIE.
Probab=29.09 E-value=46 Score=28.40 Aligned_cols=18 Identities=39% Similarity=0.809 Sum_probs=14.0
Q ss_pred CCCCCcccccCCCCcchh
Q 021283 269 NSCPICRHELQTDDHAYE 286 (314)
Q Consensus 269 ~tCPvCR~~l~~~d~~~~ 286 (314)
..||.|...|...+....
T Consensus 124 f~Cp~Cg~~l~~~dn~~~ 141 (147)
T smart00531 124 FTCPRCGEELEEDDNSEP 141 (147)
T ss_pred EECCCCCCEEEEcCchhh
Confidence 579999999987665444
No 176
>PF04423 Rad50_zn_hook: Rad50 zinc hook motif; InterPro: IPR007517 The Mre11 complex (Mre11 Rad50 Nbs1) is central to chromosomal maintenance and functions in homologous recombination, telomere maintenance and sister chromatid association. The Rad50 coiled-coil region contains a dimer interface at the apex of the coiled coils in which pairs of conserved Cys-X-X-Cys motifs form interlocking hooks that bind one Zn ion. This alignment includes the zinc hook motif and a short stretch of coiled-coil on either side.; GO: 0004518 nuclease activity, 0005524 ATP binding, 0008270 zinc ion binding, 0006281 DNA repair; PDB: 1L8D_B.
Probab=29.00 E-value=20 Score=25.27 Aligned_cols=11 Identities=36% Similarity=1.132 Sum_probs=6.0
Q ss_pred CCCCcccccCC
Q 021283 270 SCPICRHELQT 280 (314)
Q Consensus 270 tCPvCR~~l~~ 280 (314)
.||+|..+|..
T Consensus 22 ~CPlC~r~l~~ 32 (54)
T PF04423_consen 22 CCPLCGRPLDE 32 (54)
T ss_dssp E-TTT--EE-H
T ss_pred cCCCCCCCCCH
Confidence 89999999854
No 177
>PF14311 DUF4379: Domain of unknown function (DUF4379)
Probab=28.92 E-value=32 Score=24.22 Aligned_cols=22 Identities=23% Similarity=0.730 Sum_probs=13.0
Q ss_pred CCCccChhhHHHHHhcCCCCCCc
Q 021283 252 CKHTFHPPCLKPWLDEHNSCPIC 274 (314)
Q Consensus 252 CgH~FH~~CI~~WL~~~~tCPvC 274 (314)
|||.|-..= ..-......||.|
T Consensus 34 Cgh~w~~~v-~~R~~~~~~CP~C 55 (55)
T PF14311_consen 34 CGHEWKASV-NDRTRRGKGCPYC 55 (55)
T ss_pred CCCeeEccH-hhhccCCCCCCCC
Confidence 677665432 2222566789998
No 178
>PF12731 Mating_N: Mating-type protein beta 1; InterPro: IPR024333 This entry represents a group of homeodomain-containing transcription factor proteins involved in mating [].
Probab=27.73 E-value=3.1e+02 Score=21.68 Aligned_cols=57 Identities=25% Similarity=0.311 Sum_probs=45.6
Q ss_pred hHHHHHHHHHHHHHH------hh--hhhHHHHHHHHHHHHhhhCCCCChhhhHHHHHHHHHHHHH
Q 021283 4 EEGLRQQLEELQKQL------GK--KLRFEDSVANINSLLRDRFPAASPTLRNQFYSVVCRVATI 60 (314)
Q Consensus 4 ~~~~~~~l~~~~~~l------~~--k~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 60 (314)
.+.+.++|+.+++++ |. -..|-.++..+...++...+.-++.-....|...-|+++|
T Consensus 11 D~~I~~~L~~~e~~fl~sL~~g~~~L~~F~~~w~~f~~~~~s~~~~L~~~T~~~~~~fa~~V~~v 75 (95)
T PF12731_consen 11 DADIRQALQALEADFLSSLRGGSDALESFLSSWSSFDATLQSCHDHLSDETLALLHSFASRVATV 75 (95)
T ss_pred HHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHhccccCHHHHHHHHHHHHHHHHH
Confidence 445888888888776 22 4689999999999999876778888888888888888877
No 179
>PLN02436 cellulose synthase A
Probab=27.66 E-value=34 Score=38.52 Aligned_cols=49 Identities=20% Similarity=0.626 Sum_probs=34.1
Q ss_pred ccccccccccccc---CCccEEeC-CCCccChhhHHHHHh-cCCCCCCcccccC
Q 021283 231 DAECAICKENLLV---GDKMQELP-CKHTFHPPCLKPWLD-EHNSCPICRHELQ 279 (314)
Q Consensus 231 ~~~C~ICLe~~~~---~~~v~~LP-CgH~FH~~CI~~WL~-~~~tCPvCR~~l~ 279 (314)
...|-||-+++.. |+.-+-.. |+--.|+.|..-=-+ .+..||.|++...
T Consensus 36 ~~iCqICGD~Vg~t~dGe~FVACn~C~fpvCr~Cyeyer~eg~~~Cpqckt~Y~ 89 (1094)
T PLN02436 36 GQTCQICGDEIELTVDGEPFVACNECAFPVCRPCYEYERREGNQACPQCKTRYK 89 (1094)
T ss_pred CccccccccccCcCCCCCEEEeeccCCCccccchhhhhhhcCCccCcccCCchh
Confidence 4589999998743 33333333 777899999854333 4668999998765
No 180
>PF10171 DUF2366: Uncharacterised conserved protein (DUF2366); InterPro: IPR019322 This is a set of proteins conserved from nematodes to humans. The function is not known.
Probab=27.61 E-value=1.9e+02 Score=25.84 Aligned_cols=63 Identities=22% Similarity=0.228 Sum_probs=47.6
Q ss_pred HHHHHHHHHHHhhhCCCCChhhhHHHHHHHH-HHHHHhcCCCCCchhhHHhHHHHHHHhhhccCcchhhhHHHHHHHHH
Q 021283 25 EDSVANINSLLRDRFPAASPTLRNQFYSVVC-RVATILKTRYTAPGFWLAGLRLFELAESLVSDPSQKQHLKACIAKAK 102 (314)
Q Consensus 25 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~v~-~~~~~l~~~~~~~~~w~~gl~~f~~~~~~~~~~~~~~~~~~~~~~a~ 102 (314)
+....-.+++++| |.+|| =++.--++|-.-..+|.+||+.+-.+ -..+|+|..-...++..+.
T Consensus 15 ~k~~~y~k~L~~D-------------Y~ev~~d~~~~~k~rP~ka~~~~~~lg~~~~~--~~~nPde~~f~~~L~e~sn 78 (173)
T PF10171_consen 15 EKWGDYWKNLLRD-------------YKEVARDVVKDAKERPVKAALYLTLLGGAYYC--YRTNPDEQSFEDALLEASN 78 (173)
T ss_pred HHHHHHHHHHHHH-------------HHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHH--HHcCCCHHHHHHHHHHHhC
Confidence 3446667888888 88888 57777888888888899887777666 7889998887776665443
No 181
>PF14357 DUF4404: Domain of unknown function (DUF4404)
Probab=27.23 E-value=2.9e+02 Score=21.44 Aligned_cols=17 Identities=29% Similarity=0.493 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHhhhhh
Q 021283 7 LRQQLEELQKQLGKKLR 23 (314)
Q Consensus 7 ~~~~l~~~~~~l~~k~~ 23 (314)
|++.|+.|+.+|.+...
T Consensus 2 L~~~L~~L~~eL~~~~~ 18 (85)
T PF14357_consen 2 LQELLEKLHQELEQNPP 18 (85)
T ss_pred HHHHHHHHHHHHhcCCC
Confidence 67888888888886444
No 182
>KOG0824 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=27.23 E-value=26 Score=33.91 Aligned_cols=48 Identities=31% Similarity=0.567 Sum_probs=37.3
Q ss_pred CCcccccccccccccCCccEEeCCCCccChhhHHHHHhcCCCCCCccccc
Q 021283 229 GHDAECAICKENLLVGDKMQELPCKHTFHPPCLKPWLDEHNSCPICRHEL 278 (314)
Q Consensus 229 ~~~~~C~ICLe~~~~~~~v~~LPCgH~FH~~CI~~WL~~~~tCPvCR~~l 278 (314)
++...|-||...+..... .-.|.|.|+..|...|.....-||.|+...
T Consensus 103 ~~~~~~~~~~g~l~vpt~--~qg~w~qf~~~~p~~~~~~~~~~~d~~~~~ 150 (324)
T KOG0824|consen 103 QDHDICYICYGKLTVPTR--IQGCWHQFCYVCPKSNFAMGNDCPDCRGKI 150 (324)
T ss_pred CCccceeeeeeeEEeccc--ccCceeeeeecCCchhhhhhhccchhhcCc
Confidence 456789999888754332 233999999999999999888999998643
No 183
>PRK14064 exodeoxyribonuclease VII small subunit; Provisional
Probab=26.73 E-value=45 Score=25.53 Aligned_cols=55 Identities=15% Similarity=0.283 Sum_probs=38.8
Q ss_pred hhhhHHHHHHHHHHHHhhhCCCCChhhhHHHHHHHHHHHHHhcCCCCCchhhHHhHHHHHHHhhhccCcchhhhHHHHHH
Q 021283 20 KKLRFEDSVANINSLLRDRFPAASPTLRNQFYSVVCRVATILKTRYTAPGFWLAGLRLFELAESLVSDPSQKQHLKACIA 99 (314)
Q Consensus 20 ~k~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~l~~~~~~~~~w~~gl~~f~~~~~~~~~~~~~~~~~~~~~ 99 (314)
|+.+||+|+..|..++++- .+..++-. -.+.+|+.+..|... |++.+.
T Consensus 4 k~~sfEe~l~~LE~IV~~L-----------------------E~~~l~Le---esl~~ye~G~~L~k~------c~~~L~ 51 (75)
T PRK14064 4 KKKTFEEAIAELETIVEAL-----------------------ENGSASLE---DSLDMYQKGIELTKL------CQDKLQ 51 (75)
T ss_pred CcCCHHHHHHHHHHHHHHH-----------------------HCCCCCHH---HHHHHHHHHHHHHHH------HHHHHH
Confidence 4579999999999999882 22222110 125889999887754 888888
Q ss_pred HHHHhhh
Q 021283 100 KAKEHLH 106 (314)
Q Consensus 100 ~a~~~l~ 106 (314)
+|...+.
T Consensus 52 ~ae~kv~ 58 (75)
T PRK14064 52 SAEKRMA 58 (75)
T ss_pred HHHHHHH
Confidence 8888764
No 184
>KOG2231 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=26.66 E-value=41 Score=35.99 Aligned_cols=43 Identities=33% Similarity=0.699 Sum_probs=31.3
Q ss_pred cccccccccccCCccEEeCCCC-ccChhhHHHHHh--c----CCCCCCccccc
Q 021283 233 ECAICKENLLVGDKMQELPCKH-TFHPPCLKPWLD--E----HNSCPICRHEL 278 (314)
Q Consensus 233 ~C~ICLe~~~~~~~v~~LPCgH-~FH~~CI~~WL~--~----~~tCPvCR~~l 278 (314)
.|+||-..+ +-+..-.|+| ..|..|...... . ...||+||..+
T Consensus 2 ~c~ic~~s~---~~~~~~s~~h~~v~~~~~~R~~~~~~~~~~~~~~~vcr~~~ 51 (669)
T KOG2231|consen 2 SCAICAFSP---DFVGRGSCGHNEVCATCVVRLRFELNNRKCSNECPVCRREV 51 (669)
T ss_pred CcceeecCc---cccccccccccccchhhhhhhhhhcccccccccCcccccce
Confidence 599998886 3244445999 899999877533 2 44789999855
No 185
>KOG2979 consensus Protein involved in DNA repair [General function prediction only]
Probab=26.66 E-value=32 Score=32.57 Aligned_cols=44 Identities=16% Similarity=0.358 Sum_probs=32.8
Q ss_pred cccccccccccccCCccEEeCCCCccChhhHHHHHhc--CCCCCCccc
Q 021283 231 DAECAICKENLLVGDKMQELPCKHTFHPPCLKPWLDE--HNSCPICRH 276 (314)
Q Consensus 231 ~~~C~ICLe~~~~~~~v~~LPCgH~FH~~CI~~WL~~--~~tCPvCR~ 276 (314)
+..|||=+..+. .+++.-.|||+|-+.-|...+.. ...||+=-.
T Consensus 176 s~rdPis~~~I~--nPviSkkC~HvydrDsI~~~l~~~~~i~CPv~gC 221 (262)
T KOG2979|consen 176 SNRDPISKKPIV--NPVISKKCGHVYDRDSIMQILCDEITIRCPVLGC 221 (262)
T ss_pred cccCchhhhhhh--chhhhcCcCcchhhhhHHHHhccCceeecccccC
Confidence 468999776664 45666779999999999999876 345777433
No 186
>PRK03564 formate dehydrogenase accessory protein FdhE; Provisional
Probab=26.53 E-value=23 Score=34.43 Aligned_cols=44 Identities=14% Similarity=0.396 Sum_probs=27.3
Q ss_pred cccccccccccccCCccEEe--C--CCCccChhhHHHHHhcCCCCCCccc
Q 021283 231 DAECAICKENLLVGDKMQEL--P--CKHTFHPPCLKPWLDEHNSCPICRH 276 (314)
Q Consensus 231 ~~~C~ICLe~~~~~~~v~~L--P--CgH~FH~~CI~~WL~~~~tCPvCR~ 276 (314)
...||||=..-... ++.+ . =.|.+|.-|-..|--....||.|-.
T Consensus 187 ~~~CPvCGs~P~~s--~v~~~~~~G~RyL~CslC~teW~~~R~~C~~Cg~ 234 (309)
T PRK03564 187 RQFCPVCGSMPVSS--VVQIGTTQGLRYLHCNLCESEWHVVRVKCSNCEQ 234 (309)
T ss_pred CCCCCCCCCcchhh--eeeccCCCCceEEEcCCCCCcccccCccCCCCCC
Confidence 56899997663211 1111 1 1355677788888777778888864
No 187
>PF06937 EURL: EURL protein; InterPro: IPR009704 This family consists of several animal EURL proteins. EURL is preferentially expressed in chick retinal precursor cells as well as in the anterior epithelial cells of the lens at early stages of development. EURL transcripts are found primarily in the peripheral dorsal retina, i.e., the most undifferentiated part of the dorsal retina. EURL transcripts are also detected in the lens at stage 18 and remain abundant in the proliferating epithelial cells of the lens until at least day 11. The distribution pattern of EURL in the developing retina and lens suggest a role before the events leading to cell determination and differentiation [].
Probab=26.42 E-value=70 Score=30.55 Aligned_cols=56 Identities=30% Similarity=0.494 Sum_probs=31.9
Q ss_pred cccccccccccccCCccEEeC-CC-CccChhhHHHH-HhcCCCCCCcccccCCCCcchhhHHH
Q 021283 231 DAECAICKENLLVGDKMQELP-CK-HTFHPPCLKPW-LDEHNSCPICRHELQTDDHAYESWKE 290 (314)
Q Consensus 231 ~~~C~ICLe~~~~~~~v~~LP-Cg-H~FH~~CI~~W-L~~~~tCPvCR~~l~~~d~~~~~~~~ 290 (314)
-..|.||++--..|-....|. -. =.-|+.|..+| |.-+..|| |..+ ..+.|+..|-
T Consensus 30 LsfChiCfEl~iegvpks~llHtkSlRGHrdCFEK~HlIanQ~~p--rsk~--skStYe~vK~ 88 (285)
T PF06937_consen 30 LSFCHICFELSIEGVPKSNLLHTKSLRGHRDCFEKYHLIANQDCP--RSKL--SKSTYEEVKT 88 (285)
T ss_pred eeecceeeccccccCccccccccccccchHHHHHHHHHHHcCCCC--cccc--ccchHHHHHH
Confidence 356777777654333222222 11 13689999999 55677898 4443 3344766553
No 188
>PF05597 Phasin: Poly(hydroxyalcanoate) granule associated protein (phasin); InterPro: IPR008769 Polyhydroxyalkanoates (PHAs) are storage polyesters synthesised by various bacteria as intracellular carbon and energy reserve material. PHAs are accumulated as water-insoluble inclusions within the cells. This family consists of the phasins PhaF and PhaI which act as a transcriptional regulator of PHA biosynthesis genes. PhaF has been proposed to repress expression of the phaC1 gene and the phaIF operon.
Probab=26.30 E-value=40 Score=28.66 Aligned_cols=16 Identities=38% Similarity=0.738 Sum_probs=12.5
Q ss_pred chhhHHhHHHHHHHhh
Q 021283 68 PGFWLAGLRLFELAES 83 (314)
Q Consensus 68 ~~~w~~gl~~f~~~~~ 83 (314)
-..|+|||+.|-.+..
T Consensus 20 rqIWLAGLGA~ak~~~ 35 (132)
T PF05597_consen 20 RQIWLAGLGAYAKAQE 35 (132)
T ss_pred HHHHHHHhhHHHHHHH
Confidence 3469999999987753
No 189
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=26.21 E-value=77 Score=34.53 Aligned_cols=45 Identities=31% Similarity=0.708 Sum_probs=27.6
Q ss_pred ccccccccccccc----CC----ccEE-eC-CCCccChhhHHHHHhcCCCCCCcccccC
Q 021283 231 DAECAICKENLLV----GD----KMQE-LP-CKHTFHPPCLKPWLDEHNSCPICRHELQ 279 (314)
Q Consensus 231 ~~~C~ICLe~~~~----~~----~v~~-LP-CgH~FH~~CI~~WL~~~~tCPvCR~~l~ 279 (314)
+..|+-|.-.|-. |. .... .| |+|.-|..=|. ..+.||+|...+.
T Consensus 1131 ~~~c~ec~~kfP~CiasG~pIt~~~fWlC~~CkH~a~~~EIs----~y~~CPLCHs~~~ 1185 (1189)
T KOG2041|consen 1131 DLQCSECQTKFPVCIASGRPITDNIFWLCPRCKHRAHQHEIS----KYNCCPLCHSMES 1185 (1189)
T ss_pred CCCChhhcCcCceeeccCCccccceEEEcccccccccccccc----ccccCccccChhh
Confidence 5677777666531 11 1222 34 88888765554 4678999987654
No 190
>KOG2071 consensus mRNA cleavage and polyadenylation factor I/II complex, subunit Pcf11 [RNA processing and modification]
Probab=26.17 E-value=29 Score=36.42 Aligned_cols=35 Identities=34% Similarity=0.623 Sum_probs=23.7
Q ss_pred Cccccccccccccc-----CC-----ccEEeCCCCccChhhHHHH
Q 021283 230 HDAECAICKENLLV-----GD-----KMQELPCKHTFHPPCLKPW 264 (314)
Q Consensus 230 ~~~~C~ICLe~~~~-----~~-----~v~~LPCgH~FH~~CI~~W 264 (314)
....|+||.+.|.. .+ ..+.+.=|-+||..|+..-
T Consensus 512 ~~~~C~IC~EkFe~v~d~e~~~Wm~kdaV~le~G~ifH~~Cl~e~ 556 (579)
T KOG2071|consen 512 RQASCPICQEKFEVVFDQEEDLWMYKDAVYLEFGRIFHSKCLSEK 556 (579)
T ss_pred cccCCcccccccceeecchhhheeecceeeeccCceeeccccchH
Confidence 35689999999864 01 1233335889999998653
No 191
>PF13240 zinc_ribbon_2: zinc-ribbon domain
Probab=26.07 E-value=13 Score=21.95 Aligned_cols=7 Identities=43% Similarity=1.127 Sum_probs=3.0
Q ss_pred CCCCccc
Q 021283 270 SCPICRH 276 (314)
Q Consensus 270 tCPvCR~ 276 (314)
.||.|-+
T Consensus 15 fC~~CG~ 21 (23)
T PF13240_consen 15 FCPNCGT 21 (23)
T ss_pred chhhhCC
Confidence 3444433
No 192
>PF13875 DUF4202: Domain of unknown function (DUF4202)
Probab=25.85 E-value=2.2e+02 Score=25.74 Aligned_cols=53 Identities=21% Similarity=0.273 Sum_probs=38.1
Q ss_pred HHHHHHHhhhCCCCChhhhHHHHHHHHHHHHHhcCCCCC--chh--hHHhHHHHHHH
Q 021283 29 ANINSLLRDRFPAASPTLRNQFYSVVCRVATILKTRYTA--PGF--WLAGLRLFELA 81 (314)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~l~~~~~~--~~~--w~~gl~~f~~~ 81 (314)
..+..||...+|.||+.||=+.-.-=++=..|=++-|-- +|| |+..|.-|-.+
T Consensus 34 ~rMt~~l~~~~P~Ase~LqlAaR~QHi~RW~~PR~~yP~~r~GYl~WR~~l~~~hA~ 90 (185)
T PF13875_consen 34 QRMTEWLARLAPDASEALQLAARAQHIERWEIPRSSYPEGRAGYLQWRRALKKRHAA 90 (185)
T ss_pred HHHHHHHHHhCCCCCHHHHHHHHHHHHHHhcCchhcCCCCchhHHHHHHHHHHHHHH
Confidence 457789999999999999966555333445555665644 788 99888776544
No 193
>PF10083 DUF2321: Uncharacterized protein conserved in bacteria (DUF2321); InterPro: IPR016891 This entry is represented by Bacteriophage 'Lactobacillus prophage Lj928', Orf-Ljo1454. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=25.60 E-value=31 Score=30.23 Aligned_cols=24 Identities=25% Similarity=0.659 Sum_probs=14.0
Q ss_pred CCccChhhHHHHHhcCCCCCCcccccC
Q 021283 253 KHTFHPPCLKPWLDEHNSCPICRHELQ 279 (314)
Q Consensus 253 gH~FH~~CI~~WL~~~~tCPvCR~~l~ 279 (314)
.+-||..|-.+-+. .||.|..+|.
T Consensus 27 ~~~fC~kCG~~tI~---~Cp~C~~~Ir 50 (158)
T PF10083_consen 27 REKFCSKCGAKTIT---SCPNCSTPIR 50 (158)
T ss_pred HHHHHHHhhHHHHH---HCcCCCCCCC
Confidence 35566666665443 4666666554
No 194
>PF13832 zf-HC5HC2H_2: PHD-zinc-finger like domain
Probab=24.62 E-value=39 Score=26.90 Aligned_cols=32 Identities=28% Similarity=0.702 Sum_probs=22.0
Q ss_pred cccccccccccccCCccEEe--CCCCccChhhHHHH
Q 021283 231 DAECAICKENLLVGDKMQEL--PCKHTFHPPCLKPW 264 (314)
Q Consensus 231 ~~~C~ICLe~~~~~~~v~~L--PCgH~FH~~CI~~W 264 (314)
...|.||.... |-.+.-. .|...||..|....
T Consensus 55 ~~~C~iC~~~~--G~~i~C~~~~C~~~fH~~CA~~~ 88 (110)
T PF13832_consen 55 KLKCSICGKSG--GACIKCSHPGCSTAFHPTCARKA 88 (110)
T ss_pred CCcCcCCCCCC--ceeEEcCCCCCCcCCCHHHHHHC
Confidence 46999999983 2222222 28889999998663
No 195
>PF06750 DiS_P_DiS: Bacterial Peptidase A24 N-terminal domain; InterPro: IPR010627 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This domain is found at the N terminus of bacterial aspartic peptidases belonging to MEROPS peptidase family A24 (clan AD), subfamily A24A (type IV prepilin peptidase, IPR000045 from INTERPRO). It's function has not been specifically determined; however some of the family have been characterised as bifunctional [], and this domain may contain the N-methylation activity. The domain consists of an intracellular region between a pair of transmembrane domains. This intracellular region contains an invariant proline and four conserved cysteines. These Cys residues are arranged in a two-pair motif, with the Cys residues of a pair separated (usually) by 2 aa and with each pair separated by 21 largely hydrophilic residues (C-X-X-C...X21...C-X-X-C); they have been shown to be essential to the overall function of the enzyme [, ]. The bifunctional enzyme prepilin peptidase (PilD) from Pseudomonas aeruginosa is a key determinant in both type-IV pilus biogenesis and extracellular protein secretion, in its roles as a leader peptidase and methyl transferase (MTase). It is responsible for endopeptidic cleavage of the unique leader peptides that characterise type-IV pilin precursors, as well as proteins with homologous leader sequences that are essential components of the general secretion pathway found in a variety of Gram-negative pathogens. Following removal of the leader peptides, the same enzyme is responsible for the second posttranslational modification that characterises the type-IV pilins and their homologues, namely N-methylation of the newly exposed N-terminal amino acid residue [].
Probab=24.41 E-value=45 Score=26.40 Aligned_cols=38 Identities=18% Similarity=0.378 Sum_probs=28.6
Q ss_pred cccccccccccccCCccEEeCCCCccChhhHHHHHhcCCCCCCcccccCC
Q 021283 231 DAECAICKENLLVGDKMQELPCKHTFHPPCLKPWLDEHNSCPICRHELQT 280 (314)
Q Consensus 231 ~~~C~ICLe~~~~~~~v~~LPCgH~FH~~CI~~WL~~~~tCPvCR~~l~~ 280 (314)
-..|+-|...+.--+.+ =|-.|+..++.|..|+.+++.
T Consensus 33 rS~C~~C~~~L~~~~lI------------Pi~S~l~lrGrCr~C~~~I~~ 70 (92)
T PF06750_consen 33 RSHCPHCGHPLSWWDLI------------PILSYLLLRGRCRYCGAPIPP 70 (92)
T ss_pred CCcCcCCCCcCcccccc------------hHHHHHHhCCCCcccCCCCCh
Confidence 46888888887543322 256899999999999999864
No 196
>PF10497 zf-4CXXC_R1: Zinc-finger domain of monoamine-oxidase A repressor R1; InterPro: IPR018866 R1 is a transcription factor repressor that inhibits monoamine oxidase A gene expression. This domain is a four-CXXC zinc finger putative DNA-binding domain found at the C-terminal end of R1. The domain carries 12 cysteines of which four pairs are of the CXXC type [].
Probab=24.30 E-value=43 Score=27.21 Aligned_cols=24 Identities=33% Similarity=0.733 Sum_probs=18.6
Q ss_pred CCccChhhHHHHHhcC---------CCCCCccc
Q 021283 253 KHTFHPPCLKPWLDEH---------NSCPICRH 276 (314)
Q Consensus 253 gH~FH~~CI~~WL~~~---------~tCPvCR~ 276 (314)
.-.||..||..++... -.||.||.
T Consensus 37 ~~~fC~~CL~~ryge~~~ev~~~~~W~CP~Crg 69 (105)
T PF10497_consen 37 RGKFCGGCLRNRYGENVEEVLEDPNWKCPKCRG 69 (105)
T ss_pred cceehHhHHHHHHhhhHHHHhcCCceECCCCCC
Confidence 6679999998887532 26999986
No 197
>KOG2789 consensus Putative Zn-finger protein [General function prediction only]
Probab=23.62 E-value=31 Score=34.67 Aligned_cols=32 Identities=25% Similarity=0.523 Sum_probs=20.7
Q ss_pred ccccccccccccCCccEEeCCCCccChhhHHHH
Q 021283 232 AECAICKENLLVGDKMQELPCKHTFHPPCLKPW 264 (314)
Q Consensus 232 ~~C~ICLe~~~~~~~v~~LPCgH~FH~~CI~~W 264 (314)
.+|+||+-.+-..-. ..--|....|..|+.+.
T Consensus 75 ~ecpicflyyps~~n-~~rcC~~~Ic~ecf~~~ 106 (482)
T KOG2789|consen 75 TECPICFLYYPSAKN-LVRCCSETICGECFAPF 106 (482)
T ss_pred ccCceeeeecccccc-hhhhhccchhhhheecc
Confidence 599999998843111 11227777888887554
No 198
>KOG0956 consensus PHD finger protein AF10 [General function prediction only]
Probab=23.38 E-value=34 Score=36.75 Aligned_cols=48 Identities=27% Similarity=0.562 Sum_probs=30.1
Q ss_pred cccccccccccccCC--c--cEE---eCCCCccChhhHHHH----------HhcCCCCCCccccc
Q 021283 231 DAECAICKENLLVGD--K--MQE---LPCKHTFHPPCLKPW----------LDEHNSCPICRHEL 278 (314)
Q Consensus 231 ~~~C~ICLe~~~~~~--~--v~~---LPCgH~FH~~CI~~W----------L~~~~tCPvCR~~l 278 (314)
..+|-||-|.=.+.+ . ++. -.|+..||..|...- +..-..|-+|+..+
T Consensus 117 nKtCYIC~E~GrpnkA~~GACMtCNKs~CkqaFHVTCAQ~~GLLCEE~gn~~dNVKYCGYCk~Hf 181 (900)
T KOG0956|consen 117 NKTCYICNEEGRPNKAAKGACMTCNKSGCKQAFHVTCAQRAGLLCEEEGNISDNVKYCGYCKYHF 181 (900)
T ss_pred cceeeeecccCCccccccccceecccccchhhhhhhHhhhhccceeccccccccceechhHHHHH
Confidence 459999999843322 1 111 237788999998653 11233799998543
No 199
>COG2986 HutH Histidine ammonia-lyase [Amino acid transport and metabolism]
Probab=23.11 E-value=1.2e+02 Score=31.39 Aligned_cols=66 Identities=21% Similarity=0.143 Sum_probs=51.7
Q ss_pred hhhccCcchhhhHHHHHHHHHHhhhhcCCccchhhhhhcccCCCcccccc---cccCCCCCChHHHHhhhhhhhhhhh
Q 021283 82 ESLVSDPSQKQHLKACIAKAKEHLHEIDNAPEASEATYNTTNRGYLFEGH---LTVDPEPPQPQWLVQANLMNAVASL 156 (314)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~lf~g~---~~~~~~pP~p~~l~~~~~~~~~a~~ 156 (314)
-++|--|..|+-+.+.+.|+++.|.-..|.+ +|.|.+|... +..+..=..|..++.+++..+++-.
T Consensus 279 ySlRc~PQV~GA~~d~l~~~~~~le~ElNsv---------tDNPlv~~~~~~ViSgGNFhg~pva~A~D~L~iAlae~ 347 (498)
T COG2986 279 YSLRCQPQVHGACLDALRQAARVLEIELNSV---------TDNPLVFGDEEEVISGGNFHGEPVALAADFLAIALAEL 347 (498)
T ss_pred chhhhhHHHHHHHHHHHHHHHHHHhhhhhhc---------CCCCcccCCCCccccCCCcCchhHHHHHHHHHHHHHHH
Confidence 4566778999999999999999985554444 6778999855 3348888889999999998888743
No 200
>PRK14068 exodeoxyribonuclease VII small subunit; Provisional
Probab=22.89 E-value=59 Score=25.00 Aligned_cols=55 Identities=13% Similarity=0.314 Sum_probs=38.5
Q ss_pred hhhhHHHHHHHHHHHHhhhCCCCChhhhHHHHHHHHHHHHHhcCCCCCchhhHHhHHHHHHHhhhccCcchhhhHHHHHH
Q 021283 20 KKLRFEDSVANINSLLRDRFPAASPTLRNQFYSVVCRVATILKTRYTAPGFWLAGLRLFELAESLVSDPSQKQHLKACIA 99 (314)
Q Consensus 20 ~k~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~l~~~~~~~~~w~~gl~~f~~~~~~~~~~~~~~~~~~~~~ 99 (314)
|+.+||+|+..|..+++. |.+..++-. -.+.+|+.+..|..+ |+.-+.
T Consensus 4 ~~~sfEeal~~Le~IV~~-----------------------LE~gdl~Le---esl~lyeeG~~L~k~------C~~~L~ 51 (76)
T PRK14068 4 ETQSFEEMMQELEQIVQK-----------------------LDNETVSLE---ESLDLYQRGMKLSAA------CDTTLK 51 (76)
T ss_pred CccCHHHHHHHHHHHHHH-----------------------HHcCCCCHH---HHHHHHHHHHHHHHH------HHHHHH
Confidence 567999999999999988 233222211 135889999877754 777777
Q ss_pred HHHHhhh
Q 021283 100 KAKEHLH 106 (314)
Q Consensus 100 ~a~~~l~ 106 (314)
.|...+.
T Consensus 52 ~ae~kv~ 58 (76)
T PRK14068 52 NAEKKVN 58 (76)
T ss_pred HHHHHHH
Confidence 7776653
No 201
>KOG1309 consensus Suppressor of G2 allele of skp1 [Signal transduction mechanisms]
Probab=22.44 E-value=82 Score=28.47 Aligned_cols=44 Identities=20% Similarity=0.413 Sum_probs=33.0
Q ss_pred hhhhHHHHHHHHHHHHhhhCCCCChhhhHHHHHHHH-HHHHHhcCCC
Q 021283 20 KKLRFEDSVANINSLLRDRFPAASPTLRNQFYSVVC-RVATILKTRY 65 (314)
Q Consensus 20 ~k~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~v~-~~~~~l~~~~ 65 (314)
+.-+-|+| +|..+++.-|.+|++-.|++|--... =-.|||.|.+
T Consensus 131 e~e~l~dA--Al~~lF~kiY~~addDvrRAM~KSf~ESnGTvLSTnW 175 (196)
T KOG1309|consen 131 EDEKLEDA--ALNKLFQKIYSDADDDVRRAMMKSFSESNGTVLSTNW 175 (196)
T ss_pred hccchhHH--HHHHHHHHHHhcCCHHHHHHHHhhhhhcCCeEEeccH
Confidence 33444444 68899999999999999999876655 4567887753
No 202
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=22.37 E-value=36 Score=36.55 Aligned_cols=91 Identities=15% Similarity=0.058 Sum_probs=52.3
Q ss_pred HHHHHHHhhhhhHHHH------HHHHHHHHhhhCCCCChhhhHHHHHHHH-HHHHHhcCCCCCchhhHHhHHHHHHHhhh
Q 021283 12 EELQKQLGKKLRFEDS------VANINSLLRDRFPAASPTLRNQFYSVVC-RVATILKTRYTAPGFWLAGLRLFELAESL 84 (314)
Q Consensus 12 ~~~~~~l~~k~~~~~a------~~~~~~~~~~~~~~~~~~~~~~~~~~v~-~~~~~l~~~~~~~~~w~~gl~~f~~~~~~ 84 (314)
.-+-+.|-++-.|.=| +.+++++++-| +.+-+=+-..++. +.--.+.+-|+..+-|+|--.-||+|...
T Consensus 751 ~~~a~ylk~l~~~gLAaeIF~k~gD~ksiVqlH----ve~~~W~eAFalAe~hPe~~~dVy~pyaqwLAE~DrFeEAqkA 826 (1081)
T KOG1538|consen 751 LLCATYLKKLDSPGLAAEIFLKMGDLKSLVQLH----VETQRWDEAFALAEKHPEFKDDVYMPYAQWLAENDRFEEAQKA 826 (1081)
T ss_pred HHHHHHHhhccccchHHHHHHHhccHHHHhhhe----eecccchHhHhhhhhCccccccccchHHHHhhhhhhHHHHHHH
Confidence 3344445555555544 45677777766 2222211111222 44556778899999999999999999877
Q ss_pred ccCcchhhhHHHHHHHHHHhhhhcCCccch
Q 021283 85 VSDPSQKQHLKACIAKAKEHLHEIDNAPEA 114 (314)
Q Consensus 85 ~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~ 114 (314)
...+. -.|-+-|+.+++....+
T Consensus 827 fhkAG--------r~~EA~~vLeQLtnnav 848 (1081)
T KOG1538|consen 827 FHKAG--------RQREAVQVLEQLTNNAV 848 (1081)
T ss_pred HHHhc--------chHHHHHHHHHhhhhhh
Confidence 66532 23334455555555444
No 203
>PF02318 FYVE_2: FYVE-type zinc finger; InterPro: IPR003315 This entry represents the zinc-binding domain found in rabphilin Rab3A. The small G protein Rab3A plays an important role in the regulation of neurotransmitter release. The crystal structure of the small G protein Rab3A complexed with the effector domain of rabphilin-3A shows that the effector domain of rabphilin-3A contacts Rab3A in two distinct areas. The first interface involves the Rab3A switch I and switch II regions, which are sensitive to the nucleotide-binding state of Rab3A. The second interface consists of a deep pocket in Rab3A that interacts with a SGAWFF structural element of rabphilin-3A. Sequence and structure analysis, and biochemical data suggest that this pocket, or Rab complementarity-determining region (RabCDR), establishes a specific interaction between each Rab protein and its effectors. It has been suggested that RabCDRs could be major determinants of effector specificity during vesicle trafficking and fusion [].; GO: 0008270 zinc ion binding, 0017137 Rab GTPase binding, 0006886 intracellular protein transport; PDB: 2CSZ_A 2ZET_C 1ZBD_B 3BC1_B 2CJS_C 2A20_A.
Probab=22.22 E-value=44 Score=27.44 Aligned_cols=45 Identities=20% Similarity=0.455 Sum_probs=26.6
Q ss_pred ccccccccccccc--CCccEEeCCCCccChhhHHHHHhcCC--CCCCccc
Q 021283 231 DAECAICKENLLV--GDKMQELPCKHTFHPPCLKPWLDEHN--SCPICRH 276 (314)
Q Consensus 231 ~~~C~ICLe~~~~--~~~v~~LPCgH~FH~~CI~~WL~~~~--tCPvCR~ 276 (314)
+..|.+|...|.. +......-|+|.+|..|-.. ..... .|-+|..
T Consensus 54 ~~~C~~C~~~fg~l~~~~~~C~~C~~~VC~~C~~~-~~~~~~WlC~vC~k 102 (118)
T PF02318_consen 54 ERHCARCGKPFGFLFNRGRVCVDCKHRVCKKCGVY-SKKEPIWLCKVCQK 102 (118)
T ss_dssp CSB-TTTS-BCSCTSTTCEEETTTTEEEETTSEEE-TSSSCCEEEHHHHH
T ss_pred CcchhhhCCcccccCCCCCcCCcCCccccCccCCc-CCCCCCEEChhhHH
Confidence 5699999987642 23334444999999999544 11111 4877753
No 204
>KOG4577 consensus Transcription factor LIM3, contains LIM and HOX domains [Transcription]
Probab=22.17 E-value=20 Score=34.49 Aligned_cols=50 Identities=24% Similarity=0.581 Sum_probs=37.3
Q ss_pred cccccccccccccCCccEEeCCCCccChhhHHHHHhcCCCCCCcccccCCCCcchhhHH
Q 021283 231 DAECAICKENLLVGDKMQELPCKHTFHPPCLKPWLDEHNSCPICRHELQTDDHAYESWK 289 (314)
Q Consensus 231 ~~~C~ICLe~~~~~~~v~~LPCgH~FH~~CI~~WL~~~~tCPvCR~~l~~~d~~~~~~~ 289 (314)
...|+.|.+.+.+ ..|++-.=.|+||..|. .|-+|+..|.+.|.=|-.+-
T Consensus 92 GTKCsaC~~GIpP-tqVVRkAqd~VYHl~CF--------~C~iC~R~L~TGdEFYLmeD 141 (383)
T KOG4577|consen 92 GTKCSACQEGIPP-TQVVRKAQDFVYHLHCF--------ACFICKRQLATGDEFYLMED 141 (383)
T ss_pred CCcchhhcCCCCh-HHHHHHhhcceeehhhh--------hhHhhhcccccCCeeEEecc
Confidence 4579999888744 44555567899999994 48999999988887665443
No 205
>COG1645 Uncharacterized Zn-finger containing protein [General function prediction only]
Probab=21.52 E-value=48 Score=28.28 Aligned_cols=13 Identities=23% Similarity=0.585 Sum_probs=9.7
Q ss_pred ccccccccccccc
Q 021283 231 DAECAICKENLLV 243 (314)
Q Consensus 231 ~~~C~ICLe~~~~ 243 (314)
+..||+|-..+..
T Consensus 28 ~~hCp~Cg~PLF~ 40 (131)
T COG1645 28 AKHCPKCGTPLFR 40 (131)
T ss_pred HhhCcccCCccee
Confidence 4589999887754
No 206
>PF14169 YdjO: Cold-inducible protein YdjO
Probab=21.19 E-value=50 Score=24.32 Aligned_cols=15 Identities=27% Similarity=0.897 Sum_probs=11.3
Q ss_pred cCCCCCCcccccCCC
Q 021283 267 EHNSCPICRHELQTD 281 (314)
Q Consensus 267 ~~~tCPvCR~~l~~~ 281 (314)
....||+|..+....
T Consensus 38 ~~p~CPlC~s~M~~~ 52 (59)
T PF14169_consen 38 EEPVCPLCKSPMVSG 52 (59)
T ss_pred CCccCCCcCCccccc
Confidence 346899999987644
No 207
>KOG1842 consensus FYVE finger-containing protein [General function prediction only]
Probab=20.90 E-value=1.4e+02 Score=30.62 Aligned_cols=35 Identities=14% Similarity=0.284 Sum_probs=25.3
Q ss_pred CcccccccccccccCCccEEeC-CCCccChhhHHHH
Q 021283 230 HDAECAICKENLLVGDKMQELP-CKHTFHPPCLKPW 264 (314)
Q Consensus 230 ~~~~C~ICLe~~~~~~~v~~LP-CgH~FH~~CI~~W 264 (314)
+...||+|-+.|.........- ||-+.|..|..-.
T Consensus 179 ~V~~CP~Ca~~F~l~rRrHHCRLCG~VmC~~C~k~i 214 (505)
T KOG1842|consen 179 SVQFCPECANSFGLTRRRHHCRLCGRVMCRDCSKFI 214 (505)
T ss_pred cccccccccchhhhHHHhhhhhhcchHHHHHHHHhc
Confidence 4678999999996533322333 9999999997553
No 208
>PF07282 OrfB_Zn_ribbon: Putative transposase DNA-binding domain; InterPro: IPR010095 This entry represents a region of a sequence similarity between a family of putative transposases of Thermoanaerobacter tengcongensis, smaller related proteins from Bacillus anthracis, putative transposes described by IPR001959 from INTERPRO, and other proteins. More information about these proteins can be found at Protein of the Month: Transposase [].
Probab=20.81 E-value=71 Score=23.22 Aligned_cols=32 Identities=13% Similarity=0.308 Sum_probs=21.5
Q ss_pred Cccccccccccccc--CCccEEeC-CCCccChhhH
Q 021283 230 HDAECAICKENLLV--GDKMQELP-CKHTFHPPCL 261 (314)
Q Consensus 230 ~~~~C~ICLe~~~~--~~~v~~LP-CgH~FH~~CI 261 (314)
....|+.|-..... .......| ||+.+|.+-.
T Consensus 27 TSq~C~~CG~~~~~~~~~r~~~C~~Cg~~~~rD~n 61 (69)
T PF07282_consen 27 TSQTCPRCGHRNKKRRSGRVFTCPNCGFEMDRDVN 61 (69)
T ss_pred CccCccCcccccccccccceEEcCCCCCEECcHHH
Confidence 45689999887655 33455556 8887776643
No 209
>PRK04023 DNA polymerase II large subunit; Validated
Probab=20.72 E-value=80 Score=35.49 Aligned_cols=50 Identities=20% Similarity=0.368 Sum_probs=33.9
Q ss_pred cccccccccccccCCccEEeC-CC-----CccChhhHHHHHhcCCCCCCcccccCCCCcchh
Q 021283 231 DAECAICKENLLVGDKMQELP-CK-----HTFHPPCLKPWLDEHNSCPICRHELQTDDHAYE 286 (314)
Q Consensus 231 ~~~C~ICLe~~~~~~~v~~LP-Cg-----H~FH~~CI~~WL~~~~tCPvCR~~l~~~d~~~~ 286 (314)
...|+=|-... .....| || ..||..|- +......||-|-..+.......-
T Consensus 626 ~RfCpsCG~~t----~~frCP~CG~~Te~i~fCP~CG--~~~~~y~CPKCG~El~~~s~~~i 681 (1121)
T PRK04023 626 RRKCPSCGKET----FYRRCPFCGTHTEPVYRCPRCG--IEVEEDECEKCGREPTPYSKRKI 681 (1121)
T ss_pred CccCCCCCCcC----CcccCCCCCCCCCcceeCcccc--CcCCCCcCCCCCCCCCccceEEe
Confidence 46899888774 234566 98 45999993 33445679999988865554433
No 210
>PHA02675 ORF104 fusion protein; Provisional
Probab=20.71 E-value=4.3e+02 Score=20.91 Aligned_cols=43 Identities=16% Similarity=0.201 Sum_probs=24.0
Q ss_pred cchHHHHHHHHHHHHHHh---hh-hhHHHHHHHHHHHHhhhCCCCChhhhHHHHH
Q 021283 2 ESEEGLRQQLEELQKQLG---KK-LRFEDSVANINSLLRDRFPAASPTLRNQFYS 52 (314)
Q Consensus 2 ~~~~~~~~~l~~~~~~l~---~k-~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 52 (314)
.++|.|+.||-.|.|... ++ ...++.+++| ..| ..+||+.|+.
T Consensus 30 ~~~esle~RL~~L~k~~~~i~~cC~~~~~~L~RL----E~H----~ETLRk~Ml~ 76 (90)
T PHA02675 30 PSKESVEERLVSLLDSYKTITDCCRETGARLDRL----ERH----LETLREALLK 76 (90)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHH----HHHHHHHHHH
Confidence 467889998887775432 11 1122222222 223 5679998875
No 211
>TIGR00373 conserved hypothetical protein TIGR00373. This family of proteins is, so far, restricted to archaeal genomes. The family appears to be distantly related to the N-terminal region of the eukaryotic transcription initiation factor IIE alpha chain.
Probab=20.65 E-value=50 Score=28.68 Aligned_cols=21 Identities=24% Similarity=0.362 Sum_probs=15.5
Q ss_pred cCCCCCCcccccCCCCcchhh
Q 021283 267 EHNSCPICRHELQTDDHAYES 287 (314)
Q Consensus 267 ~~~tCPvCR~~l~~~d~~~~~ 287 (314)
....||.|-.++-..|..-..
T Consensus 127 ~~F~Cp~Cg~~L~~~dn~~~i 147 (158)
T TIGR00373 127 LNFTCPRCGAMLDYLDNSEAI 147 (158)
T ss_pred cCCcCCCCCCEeeeccCHHHH
Confidence 467899999999776654443
No 212
>PF02734 Dak2: DAK2 domain; InterPro: IPR004007 Dihydroxyacetone kinase (glycerone kinase) 2.7.1.29 from EC catalyses the phosphorylation of glycerone in the presence of ATP to glycerone phosphate in the glycerol utilization pathway. This is the predicted phosphatase domain of the dihydroxyacetone kinase family.; GO: 0004371 glycerone kinase activity, 0006071 glycerol metabolic process; PDB: 3CR3_B 1UN8_A 1UN9_B 3PNL_B 2BTD_A.
Probab=20.60 E-value=5.7e+02 Score=22.24 Aligned_cols=95 Identities=17% Similarity=0.109 Sum_probs=63.9
Q ss_pred HHHHHHHHHHHHhhh---hhHHHHHHHHHHHHhhhCCCCChhhhHHHHHHHHHHHHHhcCCCC-CchhhHHhHHHHHHHh
Q 021283 7 LRQQLEELQKQLGKK---LRFEDSVANINSLLRDRFPAASPTLRNQFYSVVCRVATILKTRYT-APGFWLAGLRLFELAE 82 (314)
Q Consensus 7 ~~~~l~~~~~~l~~k---~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~l~~~~~-~~~~w~~gl~~f~~~~ 82 (314)
|....+.+.+.|.+. ..+.+.+..+...+...-.++|+.|=-.||...... |+.... ...-|...+.-...+-
T Consensus 11 m~~~~~ai~~~l~~~~~~~~~~~~l~~~~~~~~~~~gGssG~L~~~~f~~~a~~---l~~~~~~~~~~~~~a~~~~~~~i 87 (175)
T PF02734_consen 11 MARGARAIKEALDDLPPEDDPGKLLKAIAMALLSGAGGSSGPLYSQFFMGAAKA---LKGKEELDAEDLAEAFEAALEAI 87 (175)
T ss_dssp HHHHHHHHHHHHHCCSCTSSHHHHHHHHHHHHHHHT-CTHHHHHHHHHHHHHHH---CHTTSECCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCcCCHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHH---hccCCCCCHHHHHHHHHHHHHHH
Confidence 566677777777765 889999999999999999999998877766665544 433332 3444776666556666
Q ss_pred hhc--cCcchhhhHHHHHHHHHHh
Q 021283 83 SLV--SDPSQKQHLKACIAKAKEH 104 (314)
Q Consensus 83 ~~~--~~~~~~~~~~~~~~~a~~~ 104 (314)
.-+ ..|.|+.+|--++..+...
T Consensus 88 ~~~g~a~~GdkTmlD~L~pa~~al 111 (175)
T PF02734_consen 88 QARGGAKPGDKTMLDALIPAAEAL 111 (175)
T ss_dssp HHHH---TTSSSTHHHHHHHHHHH
T ss_pred HHHcCCCCCcchHHHHHHHHHHHH
Confidence 666 7788887776665554444
No 213
>PF09723 Zn-ribbon_8: Zinc ribbon domain; InterPro: IPR013429 This entry represents a region of about 41 amino acids found in a number of small proteins in a wide range of bacteria. The region usually begins with the initiator Met and contains two CxxC motifs separated by 17 amino acids. One protein in this entry has been noted as a putative regulatory protein, designated FmdB []. Most proteins in this entry have a C-terminal region containing highly degenerate sequence.
Probab=20.48 E-value=24 Score=23.75 Aligned_cols=25 Identities=28% Similarity=0.531 Sum_probs=14.1
Q ss_pred CCCCccChhhHHHHHhcCCCCCCccc
Q 021283 251 PCKHTFHPPCLKPWLDEHNSCPICRH 276 (314)
Q Consensus 251 PCgH~FH~~CI~~WL~~~~tCPvCR~ 276 (314)
.|||.|-...-..= .....||.|..
T Consensus 10 ~Cg~~fe~~~~~~~-~~~~~CP~Cg~ 34 (42)
T PF09723_consen 10 ECGHEFEVLQSISE-DDPVPCPECGS 34 (42)
T ss_pred CCCCEEEEEEEcCC-CCCCcCCCCCC
Confidence 47777764321110 23457999987
No 214
>KOG4021 consensus Mitochondrial ribosomal protein S18b [Translation, ribosomal structure and biogenesis]
Probab=20.30 E-value=49 Score=30.21 Aligned_cols=22 Identities=36% Similarity=0.747 Sum_probs=15.4
Q ss_pred hhhHHHHHh-cCCCCCCcccccC
Q 021283 258 PPCLKPWLD-EHNSCPICRHELQ 279 (314)
Q Consensus 258 ~~CI~~WL~-~~~tCPvCR~~l~ 279 (314)
+.||++-=. ..+-||+||....
T Consensus 97 ktCIrkn~~~~gnpCPICRDeyL 119 (239)
T KOG4021|consen 97 KTCIRKNGRFLGNPCPICRDEYL 119 (239)
T ss_pred hHHHhhcCeecCCCCCccccceE
Confidence 468877533 4567999997654
No 215
>PF05715 zf-piccolo: Piccolo Zn-finger; InterPro: IPR008899 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This (predicted) zinc finger is found in the bassoon and piccolo proteins, both of which are components of the presynaptic cytoskeletal matrix (PCM) assembled at the active zone of neurotransmitter release, where Piccolo plays a role in the trafficking of synaptic vesicles (SVs) [, , ]. The Piccolo zinc fingers were found to interact with the dual prenylated rab3A and VAMP2/Synaptobrevin II receptor PRA1. There are eight conserved cysteines in Piccolo-type zinc fingers, suggesting that they coordinates two zinc ligands. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0046872 metal ion binding, 0045202 synapse
Probab=20.24 E-value=57 Score=24.13 Aligned_cols=11 Identities=36% Similarity=1.186 Sum_probs=6.9
Q ss_pred CCCCCcccccC
Q 021283 269 NSCPICRHELQ 279 (314)
Q Consensus 269 ~tCPvCR~~l~ 279 (314)
..||+|+..+.
T Consensus 3 ~~CPlCkt~~n 13 (61)
T PF05715_consen 3 SLCPLCKTTLN 13 (61)
T ss_pred ccCCcccchhh
Confidence 45777776553
No 216
>PRK11827 hypothetical protein; Provisional
Probab=20.11 E-value=35 Score=25.17 Aligned_cols=19 Identities=32% Similarity=0.569 Sum_probs=13.0
Q ss_pred HHHhcCCCCCCcccccCCC
Q 021283 263 PWLDEHNSCPICRHELQTD 281 (314)
Q Consensus 263 ~WL~~~~tCPvCR~~l~~~ 281 (314)
+||..--.||+|+.++..+
T Consensus 3 ~~LLeILaCP~ckg~L~~~ 21 (60)
T PRK11827 3 HRLLEIIACPVCNGKLWYN 21 (60)
T ss_pred hHHHhheECCCCCCcCeEc
Confidence 4555566788888887543
No 217
>KOG3726 consensus Uncharacterized conserved protein [Function unknown]
Probab=20.00 E-value=51 Score=35.30 Aligned_cols=41 Identities=20% Similarity=0.403 Sum_probs=28.0
Q ss_pred cccccccccccc-CCccEEeCCCCccChhhHHHHHhcCCCCCCcc
Q 021283 232 AECAICKENLLV-GDKMQELPCKHTFHPPCLKPWLDEHNSCPICR 275 (314)
Q Consensus 232 ~~C~ICLe~~~~-~~~v~~LPCgH~FH~~CI~~WL~~~~tCPvCR 275 (314)
..|-||...=.. .+.++.+-|+-.||..| |+.-.+.||+|-
T Consensus 655 r~C~vcq~pedse~~v~rt~~C~~~~C~~c---~~~~~~~~~vC~ 696 (717)
T KOG3726|consen 655 RTCKVCQLPEDSETDVCRTTFCYTPYCVAC---SLDYASISEVCG 696 (717)
T ss_pred HHHHHhcCCcCccccccCccccCCcchHhh---hhhhhccCcccC
Confidence 578888766432 23344455888888887 666678899993
Done!