Query 021283
Match_columns 314
No_of_seqs 207 out of 1647
Neff 6.2
Searched_HMMs 29240
Date Mon Mar 25 15:25:43 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021283.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/021283hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2l0b_A E3 ubiquitin-protein li 99.7 4E-17 1.4E-21 127.7 6.1 80 200-280 10-89 (91)
2 1x4j_A Ring finger protein 38; 99.6 2E-16 6.9E-21 118.9 2.0 69 211-281 5-73 (75)
3 1iym_A EL5; ring-H2 finger, ub 99.5 6.4E-15 2.2E-19 103.8 4.3 51 229-279 3-54 (55)
4 2kiz_A E3 ubiquitin-protein li 99.5 1E-14 3.4E-19 107.6 4.4 54 229-282 12-65 (69)
5 2ep4_A Ring finger protein 24; 99.5 1.7E-14 5.7E-19 107.8 4.2 55 228-282 12-66 (74)
6 2ect_A Ring finger protein 126 99.5 1.9E-14 6.4E-19 108.6 4.2 56 229-284 13-68 (78)
7 2ecm_A Ring finger and CHY zin 99.4 1.1E-13 3.7E-18 97.3 3.9 50 230-279 4-54 (55)
8 1v87_A Deltex protein 2; ring- 99.4 1.5E-13 5E-18 110.9 4.4 52 230-281 24-95 (114)
9 2xeu_A Ring finger protein 4; 99.4 1.3E-13 4.4E-18 99.5 3.3 53 230-282 2-58 (64)
10 3ng2_A RNF4, snurf, ring finge 99.4 1.3E-13 4.4E-18 101.7 3.2 54 229-282 8-65 (71)
11 2ea6_A Ring finger protein 4; 99.4 1.9E-13 6.4E-18 100.0 3.8 52 229-280 13-68 (69)
12 2ecl_A Ring-box protein 2; RNF 99.4 1.8E-13 6E-18 104.9 2.7 52 230-281 14-77 (81)
13 2ecn_A Ring finger protein 141 99.3 1.4E-13 4.7E-18 101.7 1.5 54 228-285 12-65 (70)
14 2djb_A Polycomb group ring fin 99.3 6.1E-13 2.1E-17 99.0 4.5 54 228-284 12-66 (72)
15 4ayc_A E3 ubiquitin-protein li 99.3 9.3E-13 3.2E-17 110.3 5.1 50 230-282 52-101 (138)
16 3ztg_A E3 ubiquitin-protein li 99.3 2.4E-12 8.3E-17 99.9 7.1 77 228-307 10-90 (92)
17 3dpl_R Ring-box protein 1; ubi 99.3 7.5E-13 2.6E-17 106.9 4.2 50 230-279 36-100 (106)
18 2ct2_A Tripartite motif protei 99.3 1.2E-12 4.1E-17 100.2 4.6 55 228-282 12-70 (88)
19 1chc_A Equine herpes virus-1 r 99.3 9.5E-13 3.2E-17 96.5 3.6 49 230-280 4-52 (68)
20 2d8t_A Dactylidin, ring finger 99.3 7.9E-13 2.7E-17 98.2 3.0 48 230-280 14-61 (71)
21 1t1h_A Gspef-atpub14, armadill 99.3 2E-12 6.9E-17 97.3 5.0 55 229-286 6-61 (78)
22 2ysl_A Tripartite motif-contai 99.3 1.5E-12 5.3E-17 96.5 4.3 52 228-282 17-71 (73)
23 3lrq_A E3 ubiquitin-protein li 99.3 8.7E-13 3E-17 104.7 3.0 61 228-291 19-81 (100)
24 2ecy_A TNF receptor-associated 99.3 1.6E-12 5.4E-17 95.1 4.1 51 229-282 13-64 (66)
25 2yur_A Retinoblastoma-binding 99.3 1.8E-12 6.1E-17 97.2 4.2 53 228-283 12-67 (74)
26 2csy_A Zinc finger protein 183 99.3 3E-12 1E-16 97.2 5.1 48 229-279 13-60 (81)
27 2ecw_A Tripartite motif-contai 99.2 5.2E-12 1.8E-16 95.6 4.6 52 228-282 16-73 (85)
28 2d8s_A Cellular modulator of i 99.2 3.6E-12 1.2E-16 97.9 3.3 53 230-283 14-73 (80)
29 2egp_A Tripartite motif-contai 99.2 1.8E-12 6.2E-17 97.4 1.4 52 228-282 9-67 (79)
30 2y43_A E3 ubiquitin-protein li 99.2 6.3E-12 2.2E-16 99.0 4.0 52 230-284 21-73 (99)
31 2ecv_A Tripartite motif-contai 99.2 6.1E-12 2.1E-16 95.3 3.8 52 228-282 16-73 (85)
32 4a0k_B E3 ubiquitin-protein li 99.2 1.6E-12 5.5E-17 106.8 0.2 50 230-279 47-111 (117)
33 3fl2_A E3 ubiquitin-protein li 99.2 9.8E-12 3.4E-16 101.9 4.4 48 230-280 51-99 (124)
34 2ckl_A Polycomb group ring fin 99.2 9.9E-12 3.4E-16 99.5 4.1 51 228-281 12-63 (108)
35 2ysj_A Tripartite motif-contai 99.2 1.5E-11 5E-16 89.0 4.3 44 228-274 17-63 (63)
36 4ap4_A E3 ubiquitin ligase RNF 99.2 1.1E-11 3.9E-16 101.1 3.6 54 230-283 6-63 (133)
37 1g25_A CDK-activating kinase a 99.2 2.1E-11 7.1E-16 88.8 4.3 53 231-283 3-58 (65)
38 1jm7_A BRCA1, breast cancer ty 99.2 1.2E-11 4.1E-16 98.9 3.3 51 230-283 20-73 (112)
39 1wgm_A Ubiquitin conjugation f 99.1 5.5E-11 1.9E-15 94.5 6.6 70 229-301 20-90 (98)
40 2kr4_A Ubiquitin conjugation f 99.1 3.9E-11 1.3E-15 92.7 5.4 55 229-286 12-66 (85)
41 2kre_A Ubiquitin conjugation f 99.1 5.6E-11 1.9E-15 94.8 5.6 58 229-289 27-84 (100)
42 2ecj_A Tripartite motif-contai 99.1 2.6E-11 9E-16 85.7 3.2 44 228-274 12-58 (58)
43 2ct0_A Non-SMC element 1 homol 99.1 3.5E-11 1.2E-15 91.2 3.9 55 230-286 14-70 (74)
44 3hct_A TNF receptor-associated 99.1 2.2E-11 7.7E-16 99.1 3.0 53 228-283 15-68 (118)
45 2ckl_B Ubiquitin ligase protei 99.1 2.4E-11 8.1E-16 104.3 2.6 49 230-281 53-103 (165)
46 1z6u_A NP95-like ring finger p 99.1 3.3E-11 1.1E-15 102.7 3.4 49 230-281 77-126 (150)
47 1rmd_A RAG1; V(D)J recombinati 99.1 2.3E-11 7.8E-16 98.4 1.8 51 230-283 22-73 (116)
48 4ap4_A E3 ubiquitin ligase RNF 99.1 4.5E-11 1.6E-15 97.5 2.7 54 229-282 70-127 (133)
49 3l11_A E3 ubiquitin-protein li 99.0 2.2E-11 7.6E-16 98.4 0.5 47 231-280 15-62 (115)
50 1e4u_A Transcriptional repress 99.0 1.4E-10 4.9E-15 88.4 3.7 55 228-283 8-65 (78)
51 3knv_A TNF receptor-associated 99.0 1.7E-10 5.7E-15 97.4 3.4 52 227-281 27-79 (141)
52 1jm7_B BARD1, BRCA1-associated 99.0 1.2E-10 4E-15 94.6 1.5 51 229-284 20-71 (117)
53 2y1n_A E3 ubiquitin-protein li 98.9 5.5E-10 1.9E-14 108.6 4.9 48 230-280 331-379 (389)
54 2c2l_A CHIP, carboxy terminus 98.9 5E-10 1.7E-14 102.1 4.4 53 230-285 207-260 (281)
55 2vje_A E3 ubiquitin-protein li 98.9 5.1E-10 1.7E-14 81.9 3.0 46 231-279 8-56 (64)
56 4ic3_A E3 ubiquitin-protein li 98.9 2.9E-10 9.8E-15 85.4 1.6 45 229-280 22-67 (74)
57 1bor_A Transcription factor PM 98.9 2.9E-10 9.9E-15 80.8 1.3 48 229-282 4-51 (56)
58 2yu4_A E3 SUMO-protein ligase 98.9 6E-10 2.1E-14 87.4 2.9 59 230-291 6-74 (94)
59 3hcs_A TNF receptor-associated 98.9 6.9E-10 2.4E-14 95.5 3.0 53 228-283 15-68 (170)
60 2vje_B MDM4 protein; proto-onc 98.8 1.2E-09 4E-14 79.7 2.7 46 231-279 7-55 (63)
61 2f42_A STIP1 homology and U-bo 98.8 2.9E-09 1E-13 93.4 5.3 56 230-288 105-161 (179)
62 2ecg_A Baculoviral IAP repeat- 98.8 1.7E-09 5.7E-14 81.2 2.0 46 230-282 24-70 (75)
63 2yho_A E3 ubiquitin-protein li 98.7 4.1E-09 1.4E-13 80.2 1.0 46 229-281 16-62 (79)
64 3k1l_B Fancl; UBC, ring, RWD, 98.6 4.8E-09 1.6E-13 100.2 1.2 52 229-280 306-373 (381)
65 3htk_C E3 SUMO-protein ligase 98.6 1.3E-08 4.6E-13 93.9 3.7 58 229-288 179-240 (267)
66 2ea5_A Cell growth regulator w 98.6 3E-08 1E-12 73.3 3.4 44 230-280 14-58 (68)
67 1wim_A KIAA0161 protein; ring 98.5 3.3E-08 1.1E-12 77.0 2.4 48 230-277 4-61 (94)
68 3t6p_A Baculoviral IAP repeat- 98.5 2.3E-08 8E-13 95.9 1.7 48 226-280 290-338 (345)
69 2bay_A PRE-mRNA splicing facto 98.5 2.9E-08 9.9E-13 72.1 1.7 49 231-282 3-52 (61)
70 1vyx_A ORF K3, K3RING; zinc-bi 98.5 7.9E-08 2.7E-12 69.6 4.0 48 230-280 5-59 (60)
71 3vk6_A E3 ubiquitin-protein li 98.0 3.3E-06 1.1E-10 67.0 3.4 46 233-280 3-49 (101)
72 3nw0_A Non-structural maintena 97.8 1E-05 3.5E-10 73.7 3.5 52 230-284 179-233 (238)
73 2ko5_A Ring finger protein Z; 94.5 0.011 3.6E-07 46.3 1.3 47 230-281 27-74 (99)
74 2jun_A Midline-1; B-BOX, TRIM, 94.0 0.022 7.6E-07 44.0 2.1 35 231-265 3-38 (101)
75 2lri_C Autoimmune regulator; Z 92.9 0.08 2.7E-06 38.5 3.4 45 230-278 11-60 (66)
76 3m62_A Ubiquitin conjugation f 92.9 0.12 4.1E-06 55.3 6.1 52 229-283 889-941 (968)
77 2xb1_A Pygopus homolog 2, B-ce 91.6 0.0098 3.4E-07 47.3 -3.1 80 231-311 3-94 (105)
78 3lqh_A Histone-lysine N-methyl 85.8 0.31 1.1E-05 42.4 2.0 47 232-278 3-64 (183)
79 1we9_A PHD finger family prote 85.3 0.15 5E-06 36.4 -0.3 48 230-277 5-58 (64)
80 2lv9_A Histone-lysine N-methyl 83.8 0.3 1E-05 38.0 0.9 44 231-276 28-75 (98)
81 1f62_A Transcription factor WS 83.3 0.46 1.6E-05 32.2 1.6 43 233-276 2-49 (51)
82 3u5n_A E3 ubiquitin-protein li 82.6 0.3 1E-05 42.8 0.5 45 230-278 6-55 (207)
83 2l5u_A Chromodomain-helicase-D 81.3 0.56 1.9E-05 33.2 1.5 44 230-277 10-58 (61)
84 1mm2_A MI2-beta; PHD, zinc fin 81.0 0.44 1.5E-05 33.8 0.8 47 230-279 8-58 (61)
85 1wil_A KIAA1045 protein; ring 80.8 0.98 3.4E-05 34.5 2.7 31 230-264 14-47 (89)
86 3o36_A Transcription intermedi 80.0 0.53 1.8E-05 40.3 1.1 45 231-279 4-53 (184)
87 2k16_A Transcription initiatio 78.7 0.48 1.6E-05 34.7 0.4 49 230-279 17-70 (75)
88 1fp0_A KAP-1 corepressor; PHD 78.0 0.99 3.4E-05 34.7 2.0 45 230-278 24-73 (88)
89 2cs3_A Protein C14ORF4, MY039 77.5 1.4 4.8E-05 33.5 2.6 36 231-267 15-52 (93)
90 2puy_A PHD finger protein 21A; 75.6 0.23 8E-06 35.0 -2.1 45 230-278 4-53 (60)
91 2yql_A PHD finger protein 21A; 73.9 0.32 1.1E-05 33.8 -1.7 44 229-276 7-55 (56)
92 2hy6_A General control protein 72.5 6.9 0.00023 24.6 4.4 29 6-37 5-33 (34)
93 2kgg_A Histone demethylase jar 72.0 2.8 9.6E-05 28.5 2.9 43 233-275 4-52 (52)
94 2ro1_A Transcription intermedi 72.0 0.98 3.3E-05 39.1 0.6 44 231-277 2-49 (189)
95 3i2d_A E3 SUMO-protein ligase 71.2 2.5 8.4E-05 40.6 3.3 57 231-289 249-309 (371)
96 2yru_A Steroid receptor RNA ac 69.7 8.9 0.0003 30.8 5.8 85 5-89 16-117 (118)
97 1xwh_A Autoimmune regulator; P 69.6 0.7 2.4E-05 33.2 -0.7 44 230-277 7-55 (66)
98 3v43_A Histone acetyltransfera 68.8 1.6 5.5E-05 34.4 1.2 44 233-276 63-111 (112)
99 4fo9_A E3 SUMO-protein ligase 67.6 3.4 0.00011 39.5 3.3 58 231-290 215-276 (360)
100 2ysm_A Myeloid/lymphoid or mix 67.3 1.6 5.6E-05 34.2 0.9 46 230-275 6-55 (111)
101 2yt5_A Metal-response element- 67.3 0.85 2.9E-05 32.4 -0.7 51 229-279 4-63 (66)
102 2vpb_A Hpygo1, pygopus homolog 67.2 3.1 0.00011 29.8 2.4 32 230-261 7-40 (65)
103 2e6r_A Jumonji/ARID domain-con 67.2 0.48 1.6E-05 36.5 -2.2 46 230-276 15-65 (92)
104 2ri7_A Nucleosome-remodeling f 66.4 1.2 4.1E-05 37.6 -0.0 47 230-277 7-59 (174)
105 3c3f_A Alpha/beta peptide with 66.3 10 0.00035 23.8 4.2 29 6-37 5-33 (34)
106 1wep_A PHF8; structural genomi 66.1 3.7 0.00013 30.3 2.7 47 231-278 12-64 (79)
107 2l43_A N-teminal domain from h 65.2 1.4 4.7E-05 33.6 0.1 53 229-281 23-79 (88)
108 2bni_A General control protein 64.0 10 0.00036 23.8 4.0 29 6-37 5-33 (34)
109 2lbm_A Transcriptional regulat 62.2 5.7 0.0002 33.0 3.4 45 229-276 61-116 (142)
110 1joc_A EEA1, early endosomal a 61.0 4.7 0.00016 32.5 2.6 34 231-264 69-103 (125)
111 1dvp_A HRS, hepatocyte growth 60.7 3.9 0.00013 35.8 2.3 34 231-264 161-195 (220)
112 1weu_A Inhibitor of growth fam 60.0 4.5 0.00016 31.1 2.2 44 231-278 36-86 (91)
113 1vfy_A Phosphatidylinositol-3- 59.0 6.1 0.00021 28.6 2.7 34 231-264 11-45 (73)
114 1y02_A CARP2, FYVE-ring finger 57.6 1.2 4.2E-05 36.0 -1.5 48 231-278 19-67 (120)
115 3mpx_A FYVE, rhogef and PH dom 57.4 2.2 7.5E-05 40.7 0.0 48 231-278 375-430 (434)
116 3v43_A Histone acetyltransfera 57.2 11 0.00038 29.5 4.2 33 230-262 4-42 (112)
117 3zyq_A Hepatocyte growth facto 57.1 5 0.00017 35.5 2.3 34 231-264 164-198 (226)
118 3shb_A E3 ubiquitin-protein li 56.3 1.7 5.7E-05 32.4 -0.8 43 233-276 28-76 (77)
119 3ask_A E3 ubiquitin-protein li 55.8 2.5 8.6E-05 37.9 0.1 44 232-276 175-224 (226)
120 2e6s_A E3 ubiquitin-protein li 55.7 2.2 7.6E-05 31.7 -0.2 44 232-276 27-76 (77)
121 3t7l_A Zinc finger FYVE domain 55.7 6.9 0.00024 29.6 2.6 35 231-265 20-55 (90)
122 1wev_A Riken cDNA 1110020M19; 55.2 1.4 4.9E-05 33.4 -1.4 49 231-279 16-74 (88)
123 1z2q_A LM5-1; membrane protein 54.7 7.9 0.00027 28.9 2.7 35 230-264 20-55 (84)
124 1uo4_A General control protein 54.4 20 0.0007 22.5 4.1 29 6-37 5-33 (34)
125 2ku3_A Bromodomain-containing 54.4 2.9 9.9E-05 30.6 0.2 48 229-276 14-65 (71)
126 2yw8_A RUN and FYVE domain-con 54.4 7.5 0.00026 28.8 2.6 34 231-264 19-53 (82)
127 1wem_A Death associated transc 51.1 2.8 9.7E-05 30.6 -0.3 45 232-278 17-71 (76)
128 1wen_A Inhibitor of growth fam 51.1 6.3 0.00021 28.7 1.6 44 231-278 16-66 (71)
129 3ql9_A Transcriptional regulat 50.8 14 0.00048 30.1 3.8 44 229-276 55-110 (129)
130 3asl_A E3 ubiquitin-protein li 50.7 2.9 0.0001 30.3 -0.3 43 233-276 20-68 (70)
131 2oxj_A Hybrid alpha/beta pepti 50.1 27 0.00093 21.9 4.1 29 6-37 5-33 (34)
132 1wfk_A Zinc finger, FYVE domai 49.8 8.3 0.00028 29.1 2.2 49 230-278 8-64 (88)
133 1zbd_B Rabphilin-3A; G protein 49.1 7.7 0.00026 31.8 2.0 33 230-262 54-88 (134)
134 1x4u_A Zinc finger, FYVE domai 49.0 9.8 0.00034 28.3 2.5 34 231-264 14-48 (84)
135 3c3g_A Alpha/beta peptide with 48.8 34 0.0012 21.3 4.4 29 6-37 4-32 (33)
136 1wee_A PHD finger family prote 48.6 2.1 7.3E-05 31.0 -1.3 47 231-278 16-67 (72)
137 2o35_A Hypothetical protein DU 48.2 6.7 0.00023 30.7 1.4 11 256-266 43-53 (105)
138 3fyb_A Protein of unknown func 48.1 6.8 0.00023 30.7 1.4 11 256-266 42-52 (104)
139 1z60_A TFIIH basal transcripti 47.8 11 0.00038 26.6 2.4 42 232-274 16-58 (59)
140 3m48_A General control protein 43.7 35 0.0012 21.2 3.9 29 6-37 4-32 (33)
141 1wew_A DNA-binding family prot 43.3 5 0.00017 29.5 0.0 47 231-278 16-73 (78)
142 1weo_A Cellulose synthase, cat 41.6 30 0.001 26.5 4.1 49 231-279 16-69 (93)
143 2d8v_A Zinc finger FYVE domain 41.4 9 0.00031 27.8 1.1 31 230-264 7-38 (67)
144 1kd8_B GABH BLL, GCN4 acid bas 40.9 50 0.0017 20.9 4.4 29 6-37 5-33 (36)
145 1iml_A CRIP, cysteine rich int 39.9 11 0.00037 26.8 1.4 41 231-275 27-68 (76)
146 3o70_A PHD finger protein 13; 39.2 4 0.00014 29.4 -1.1 45 230-276 18-66 (68)
147 2ysm_A Myeloid/lymphoid or mix 38.9 3.5 0.00012 32.2 -1.6 43 233-276 56-103 (111)
148 4gne_A Histone-lysine N-methyl 38.9 17 0.00059 28.5 2.5 46 229-280 13-65 (107)
149 2kwj_A Zinc finger protein DPF 38.0 1.9 6.5E-05 34.2 -3.3 45 233-278 60-109 (114)
150 2gmg_A Hypothetical protein PF 37.9 6.5 0.00022 31.1 -0.1 26 249-279 70-95 (105)
151 2rsd_A E3 SUMO-protein ligase 37.0 2.1 7.1E-05 30.8 -2.9 43 232-276 11-64 (68)
152 2cu8_A Cysteine-rich protein 2 36.7 16 0.00055 25.8 1.9 40 231-280 9-48 (76)
153 2ct7_A Ring finger protein 31; 35.1 5.9 0.0002 29.6 -0.7 36 233-268 27-65 (86)
154 3c6w_A P28ING5, inhibitor of g 35.1 5.7 0.0002 27.8 -0.8 42 231-276 9-57 (59)
155 2vnf_A ING 4, P29ING4, inhibit 33.6 6.1 0.00021 27.7 -0.9 41 231-276 10-58 (60)
156 1x63_A Skeletal muscle LIM-pro 33.0 32 0.0011 24.4 3.1 41 232-281 16-56 (82)
157 2co8_A NEDD9 interacting prote 32.5 33 0.0011 24.8 3.0 42 231-282 15-56 (82)
158 2dj7_A Actin-binding LIM prote 32.2 25 0.00087 25.3 2.4 39 231-279 15-53 (80)
159 3kqi_A GRC5, PHD finger protei 31.7 11 0.00038 27.3 0.3 47 231-277 9-61 (75)
160 2wq1_A General control protein 31.5 90 0.0031 19.4 4.3 28 7-37 5-32 (33)
161 3kv4_A PHD finger protein 8; e 31.5 7.5 0.00026 38.1 -0.9 52 231-282 4-61 (447)
162 3twe_A Alpha4H; unknown functi 31.1 37 0.0013 19.7 2.3 14 7-20 6-19 (27)
163 3a1b_A DNA (cytosine-5)-methyl 30.8 28 0.00095 29.4 2.6 44 229-276 77-133 (159)
164 2zet_C Melanophilin; complex, 30.3 22 0.00077 29.6 2.0 46 230-276 67-116 (153)
165 2l3k_A Rhombotin-2, linker, LI 30.0 28 0.00095 27.2 2.4 27 233-260 10-36 (123)
166 1x4l_A Skeletal muscle LIM-pro 29.9 42 0.0014 23.2 3.2 39 232-279 6-46 (72)
167 1wyh_A SLIM 2, skeletal muscle 29.9 32 0.0011 23.8 2.5 41 232-281 6-46 (72)
168 1x4k_A Skeletal muscle LIM-pro 28.7 34 0.0012 23.6 2.5 41 232-281 6-46 (72)
169 2jne_A Hypothetical protein YF 28.1 19 0.00064 28.1 1.0 41 231-279 32-72 (101)
170 1g47_A Pinch protein; LIM doma 27.8 37 0.0012 23.8 2.6 42 231-281 11-52 (77)
171 2r2v_A GCN4 leucine zipper; co 27.3 1.2E+02 0.004 19.0 4.7 23 15-37 11-33 (34)
172 2jvx_A NF-kappa-B essential mo 26.5 20 0.00068 21.5 0.7 13 269-281 4-16 (28)
173 1zfo_A LAsp-1; LIM domain, zin 26.2 23 0.00079 21.2 1.0 28 232-261 4-31 (31)
174 1x61_A Thyroid receptor intera 26.1 52 0.0018 22.6 3.1 39 232-279 6-44 (72)
175 2pk7_A Uncharacterized protein 25.6 18 0.00062 26.2 0.5 19 262-280 2-20 (69)
176 2pv0_B DNA (cytosine-5)-methyl 25.2 37 0.0013 32.6 2.7 63 229-294 91-166 (386)
177 2xjy_A Rhombotin-2; oncoprotei 24.7 46 0.0016 25.8 2.9 50 231-280 29-78 (131)
178 1x64_A Alpha-actinin-2 associa 24.5 68 0.0023 23.2 3.6 40 231-281 25-64 (89)
179 1m3v_A FLIN4, fusion of the LI 24.1 49 0.0017 25.7 2.9 52 231-282 32-83 (122)
180 1nyp_A Pinch protein; LIM doma 23.7 47 0.0016 22.5 2.4 38 232-280 6-43 (66)
181 2dar_A PDZ and LIM domain prot 23.3 44 0.0015 24.3 2.3 39 231-280 25-63 (90)
182 3mjh_B Early endosome antigen 23.2 18 0.00062 22.7 0.1 10 232-241 6-15 (34)
183 2jny_A Uncharacterized BCR; st 23.2 16 0.00055 26.4 -0.2 19 262-280 4-22 (67)
184 1x68_A FHL5 protein; four-and- 22.5 50 0.0017 23.2 2.4 40 232-279 6-46 (76)
185 1x62_A C-terminal LIM domain p 22.4 53 0.0018 23.2 2.6 38 231-279 15-52 (79)
186 2d8y_A Eplin protein; LIM doma 22.0 63 0.0021 23.5 3.0 40 231-280 15-54 (91)
187 2fiy_A Protein FDHE homolog; F 21.9 8.3 0.00028 36.0 -2.5 46 230-277 181-231 (309)
188 1wig_A KIAA1808 protein; LIM d 21.0 64 0.0022 22.6 2.7 37 232-279 6-42 (73)
189 1a7i_A QCRP2 (LIM1); LIM domai 20.5 29 0.00098 24.8 0.7 41 231-281 7-47 (81)
No 1
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=99.67 E-value=4e-17 Score=127.74 Aligned_cols=80 Identities=40% Similarity=0.862 Sum_probs=68.3
Q ss_pred CCCCCCCCCHHHHhhCCCccchhHHhhhcCCcccccccccccccCCccEEeCCCCccChhhHHHHHhcCCCCCCcccccC
Q 021283 200 ATPRVPPASKEVVAKLPVITLTEEILDKLGHDAECAICKENLLVGDKMQELPCKHTFHPPCLKPWLDEHNSCPICRHELQ 279 (314)
Q Consensus 200 ~~~~~~~~s~e~i~~Lp~~~~~~~~~~~~~~~~~C~ICLe~~~~~~~v~~LPCgH~FH~~CI~~WL~~~~tCPvCR~~l~ 279 (314)
......+++++.++.||.+.+.... .....+..|+||++.|..++.++.+||+|.||..||..|+..+.+||+||.++.
T Consensus 10 ~~~~~~~~s~~~i~~lp~~~~~~~~-~~~~~~~~C~IC~~~~~~~~~~~~l~C~H~Fh~~Ci~~wl~~~~~CP~Cr~~~~ 88 (91)
T 2l0b_A 10 HMVANPPASKESIDALPEILVTEDH-GAVGQEMCCPICCSEYVKGDVATELPCHHYFHKPCVSIWLQKSGTCPVCRCMFP 88 (91)
T ss_dssp CSSCCCCCCHHHHHTSCEEECCTTC-SSSSSCSEETTTTEECCTTCEEEEETTTEEEEHHHHHHHHTTTCBCTTTCCBSS
T ss_pred CCcCCCCCCHHHHHhCCCeeecccc-cccCCCCCCcccChhhcCCCcEEecCCCChHHHHHHHHHHHcCCcCcCcCccCC
Confidence 3445669999999999999887542 233457789999999988888999999999999999999999999999999986
Q ss_pred C
Q 021283 280 T 280 (314)
Q Consensus 280 ~ 280 (314)
+
T Consensus 89 ~ 89 (91)
T 2l0b_A 89 P 89 (91)
T ss_dssp C
T ss_pred C
Confidence 5
No 2
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.59 E-value=2e-16 Score=118.89 Aligned_cols=69 Identities=26% Similarity=0.733 Sum_probs=57.5
Q ss_pred HHhhCCCccchhHHhhhcCCcccccccccccccCCccEEeCCCCccChhhHHHHHhcCCCCCCcccccCCC
Q 021283 211 VVAKLPVITLTEEILDKLGHDAECAICKENLLVGDKMQELPCKHTFHPPCLKPWLDEHNSCPICRHELQTD 281 (314)
Q Consensus 211 ~i~~Lp~~~~~~~~~~~~~~~~~C~ICLe~~~~~~~v~~LPCgH~FH~~CI~~WL~~~~tCPvCR~~l~~~ 281 (314)
.++.||...+... +...++..|+||++.|..++.++.+||+|.||..||.+|+..+.+||+||.++.+.
T Consensus 5 ~i~~lp~~~~~~~--~~~~~~~~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~w~~~~~~CP~Cr~~~~~~ 73 (75)
T 1x4j_A 5 SSGQLPSYRFNPN--NHQSEQTLCVVCMCDFESRQLLRVLPCNHEFHAKCVDKWLKANRTCPICRADSGPS 73 (75)
T ss_dssp CCSSCCCEEBCSS--SCSSSCCEETTTTEECCBTCEEEEETTTEEEETTHHHHHHHHCSSCTTTCCCCCCC
T ss_pred hHhhCCcEEecCc--cccCCCCCCeECCcccCCCCeEEEECCCCHhHHHHHHHHHHcCCcCcCcCCcCCCC
Confidence 4567777776543 23345778999999998888889999999999999999999999999999998764
No 3
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=99.52 E-value=6.4e-15 Score=103.79 Aligned_cols=51 Identities=39% Similarity=0.991 Sum_probs=46.5
Q ss_pred CCcccccccccccccCCccEEeC-CCCccChhhHHHHHhcCCCCCCcccccC
Q 021283 229 GHDAECAICKENLLVGDKMQELP-CKHTFHPPCLKPWLDEHNSCPICRHELQ 279 (314)
Q Consensus 229 ~~~~~C~ICLe~~~~~~~v~~LP-CgH~FH~~CI~~WL~~~~tCPvCR~~l~ 279 (314)
.++.+|+||++.+..++.++.+| |+|.||..||.+|+..+.+||+||.++.
T Consensus 3 ~~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~~~~CP~Cr~~~~ 54 (55)
T 1iym_A 3 DDGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGSHSTCPLCRLTVV 54 (55)
T ss_dssp CCSCCCTTTCCCCCTTSCCEECSSSCCEECTTHHHHTTTTCCSCSSSCCCSC
T ss_pred CCCCcCccCCccccCCCceEECCCCCCcccHHHHHHHHHcCCcCcCCCCEeE
Confidence 35679999999998888889998 9999999999999999999999999874
No 4
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=99.50 E-value=1e-14 Score=107.58 Aligned_cols=54 Identities=35% Similarity=0.917 Sum_probs=48.3
Q ss_pred CCcccccccccccccCCccEEeCCCCccChhhHHHHHhcCCCCCCcccccCCCC
Q 021283 229 GHDAECAICKENLLVGDKMQELPCKHTFHPPCLKPWLDEHNSCPICRHELQTDD 282 (314)
Q Consensus 229 ~~~~~C~ICLe~~~~~~~v~~LPCgH~FH~~CI~~WL~~~~tCPvCR~~l~~~d 282 (314)
..+..|+||++.|..+..++.+||+|.||..||..|+..+.+||+||..+....
T Consensus 12 ~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~ 65 (69)
T 2kiz_A 12 DTEEKCTICLSILEEGEDVRRLPCMHLFHQVCVDQWLITNKKCPICRVDIEAQL 65 (69)
T ss_dssp TCCCSBTTTTBCCCSSSCEEECTTSCEEEHHHHHHHHHHCSBCTTTCSBSCSCC
T ss_pred CCCCCCeeCCccccCCCcEEEeCCCCHHHHHHHHHHHHcCCCCcCcCccccCcC
Confidence 446789999999987778899999999999999999999999999999987543
No 5
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.48 E-value=1.7e-14 Score=107.80 Aligned_cols=55 Identities=35% Similarity=0.808 Sum_probs=48.6
Q ss_pred cCCcccccccccccccCCccEEeCCCCccChhhHHHHHhcCCCCCCcccccCCCC
Q 021283 228 LGHDAECAICKENLLVGDKMQELPCKHTFHPPCLKPWLDEHNSCPICRHELQTDD 282 (314)
Q Consensus 228 ~~~~~~C~ICLe~~~~~~~v~~LPCgH~FH~~CI~~WL~~~~tCPvCR~~l~~~d 282 (314)
...+..|+||++.|..+..++.+||+|.||..||..|+..+.+||+||.++....
T Consensus 12 ~~~~~~C~IC~~~~~~~~~~~~~~C~H~f~~~Ci~~~~~~~~~CP~Cr~~~~~~~ 66 (74)
T 2ep4_A 12 LNLHELCAVCLEDFKPRDELGICPCKHAFHRKCLIKWLEVRKVCPLCNMPVLQLA 66 (74)
T ss_dssp CCCSCBCSSSCCBCCSSSCEEEETTTEEEEHHHHHHHHHHCSBCTTTCCBCSSCC
T ss_pred CCCCCCCcCCCcccCCCCcEEEcCCCCEecHHHHHHHHHcCCcCCCcCccccccc
Confidence 3456799999999988788888999999999999999999999999999986543
No 6
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.48 E-value=1.9e-14 Score=108.59 Aligned_cols=56 Identities=45% Similarity=1.194 Sum_probs=49.5
Q ss_pred CCcccccccccccccCCccEEeCCCCccChhhHHHHHhcCCCCCCcccccCCCCcc
Q 021283 229 GHDAECAICKENLLVGDKMQELPCKHTFHPPCLKPWLDEHNSCPICRHELQTDDHA 284 (314)
Q Consensus 229 ~~~~~C~ICLe~~~~~~~v~~LPCgH~FH~~CI~~WL~~~~tCPvCR~~l~~~d~~ 284 (314)
..+..|+||++.|.....++.+||+|.||..||..|+..+.+||+||.++...+..
T Consensus 13 ~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~~ 68 (78)
T 2ect_A 13 GSGLECPVCKEDYALGESVRQLPCNHLFHDSCIVPWLEQHDSCPVCRKSLTGQNTA 68 (78)
T ss_dssp SSSCCCTTTTSCCCTTSCEEECTTSCEEETTTTHHHHTTTCSCTTTCCCCCCSCSC
T ss_pred CCCCCCeeCCccccCCCCEEEeCCCCeecHHHHHHHHHcCCcCcCcCCccCCcccC
Confidence 45679999999998777788899999999999999999999999999999765543
No 7
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=99.41 E-value=1.1e-13 Score=97.28 Aligned_cols=50 Identities=30% Similarity=0.702 Sum_probs=43.7
Q ss_pred CcccccccccccccC-CccEEeCCCCccChhhHHHHHhcCCCCCCcccccC
Q 021283 230 HDAECAICKENLLVG-DKMQELPCKHTFHPPCLKPWLDEHNSCPICRHELQ 279 (314)
Q Consensus 230 ~~~~C~ICLe~~~~~-~~v~~LPCgH~FH~~CI~~WL~~~~tCPvCR~~l~ 279 (314)
.+..|+||++.+..+ ..++.++|+|.||..||..|+..+.+||+||.++.
T Consensus 4 ~~~~C~IC~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~ 54 (55)
T 2ecm_A 4 GSSGCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKEGYRCPLCSGPSS 54 (55)
T ss_dssp CCCSCTTTCCCCCTTTSCEEECTTSCEEETTHHHHHHHHTCCCTTSCCSSC
T ss_pred CCCcCcccChhhcCCCcCeEecCCCCcccHHHHHHHHHcCCcCCCCCCcCC
Confidence 467899999998543 35788899999999999999999999999999874
No 8
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=99.39 E-value=1.5e-13 Score=110.90 Aligned_cols=52 Identities=31% Similarity=0.644 Sum_probs=41.9
Q ss_pred CcccccccccccccCC---------------ccEEeCCCCccChhhHHHHH-----hcCCCCCCcccccCCC
Q 021283 230 HDAECAICKENLLVGD---------------KMQELPCKHTFHPPCLKPWL-----DEHNSCPICRHELQTD 281 (314)
Q Consensus 230 ~~~~C~ICLe~~~~~~---------------~v~~LPCgH~FH~~CI~~WL-----~~~~tCPvCR~~l~~~ 281 (314)
.+..|+||++.|..+. .++.++|+|.||..||..|| ..+.+||+||..+...
T Consensus 24 ~~~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~Fh~~Ci~~wl~~~~~~~~~~CP~CR~~~~~~ 95 (114)
T 1v87_A 24 PEEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGNKDGSLQCPSCKTIYGEK 95 (114)
T ss_dssp CSCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCEECHHHHHHHHHHTCCSSCCBCTTTCCBSSSC
T ss_pred CCCcCccCChhhcCcccccccccccccCcccceecCCCCCcccHHHHHHHHHcccCCCCCcCCCCCCccCCC
Confidence 3569999999996532 23478899999999999999 4567999999988643
No 9
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=99.39 E-value=1.3e-13 Score=99.46 Aligned_cols=53 Identities=26% Similarity=0.631 Sum_probs=45.6
Q ss_pred CcccccccccccccC----CccEEeCCCCccChhhHHHHHhcCCCCCCcccccCCCC
Q 021283 230 HDAECAICKENLLVG----DKMQELPCKHTFHPPCLKPWLDEHNSCPICRHELQTDD 282 (314)
Q Consensus 230 ~~~~C~ICLe~~~~~----~~v~~LPCgH~FH~~CI~~WL~~~~tCPvCR~~l~~~d 282 (314)
++..|+||++.+... ..++.++|||.||..||..|+..+.+||+||.++...+
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~ 58 (64)
T 2xeu_A 2 AMVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHKR 58 (64)
T ss_dssp CCCBCTTTCCBHHHHHHTTCCEEEETTSCEEEHHHHHHHHHHCSBCTTTCCBCTTTC
T ss_pred CCCCCCccChhhhCccccCCCEEeCCCCCchhHHHHHHHHHcCCCCCCCCccCCccc
Confidence 467999999998642 34578999999999999999999999999999997654
No 10
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=99.38 E-value=1.3e-13 Score=101.73 Aligned_cols=54 Identities=26% Similarity=0.637 Sum_probs=46.1
Q ss_pred CCcccccccccccccC----CccEEeCCCCccChhhHHHHHhcCCCCCCcccccCCCC
Q 021283 229 GHDAECAICKENLLVG----DKMQELPCKHTFHPPCLKPWLDEHNSCPICRHELQTDD 282 (314)
Q Consensus 229 ~~~~~C~ICLe~~~~~----~~v~~LPCgH~FH~~CI~~WL~~~~tCPvCR~~l~~~d 282 (314)
.++..|+||++.+... ..++.++|||.||..||..|+..+.+||+||.++...+
T Consensus 8 ~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~ 65 (71)
T 3ng2_A 8 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHKR 65 (71)
T ss_dssp TTCCBCTTTCCBHHHHHTTTCCEEECTTSCEEEHHHHHHHHHHCSBCTTTCCBCCCCS
T ss_pred CCCCCCcccChhhhccccccCCeEeCCCCChHhHHHHHHHHHcCCCCCCCCCccChhh
Confidence 3467999999998642 34588899999999999999999999999999997654
No 11
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.38 E-value=1.9e-13 Score=100.02 Aligned_cols=52 Identities=27% Similarity=0.660 Sum_probs=44.5
Q ss_pred CCcccccccccccccC----CccEEeCCCCccChhhHHHHHhcCCCCCCcccccCC
Q 021283 229 GHDAECAICKENLLVG----DKMQELPCKHTFHPPCLKPWLDEHNSCPICRHELQT 280 (314)
Q Consensus 229 ~~~~~C~ICLe~~~~~----~~v~~LPCgH~FH~~CI~~WL~~~~tCPvCR~~l~~ 280 (314)
.+...|+||++.+... ..++.++|+|.||..||..|+..+.+||+||.++..
T Consensus 13 ~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 68 (69)
T 2ea6_A 13 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINH 68 (69)
T ss_dssp TCCCCCTTTCCCHHHHTTTTCCEEECSSSCEEEHHHHHHHHHHCSSCTTTCCCCCC
T ss_pred CCCCCCcccCccccccccccCCeEeCCCCChhcHHHHHHHHHcCCCCCCCCCccCc
Confidence 4567999999998642 334788999999999999999999999999998864
No 12
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.36 E-value=1.8e-13 Score=104.86 Aligned_cols=52 Identities=29% Similarity=0.819 Sum_probs=42.1
Q ss_pred Cccccccccccccc-----------CCccEEeC-CCCccChhhHHHHHhcCCCCCCcccccCCC
Q 021283 230 HDAECAICKENLLV-----------GDKMQELP-CKHTFHPPCLKPWLDEHNSCPICRHELQTD 281 (314)
Q Consensus 230 ~~~~C~ICLe~~~~-----------~~~v~~LP-CgH~FH~~CI~~WL~~~~tCPvCR~~l~~~ 281 (314)
++..|+||++.|.. ++.++.++ |+|.||..||.+||..+.+||+||.++...
T Consensus 14 ~~~~C~IC~~~~~~~C~iC~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~~~~~ 77 (81)
T 2ecl_A 14 ECDTCAICRVQVMDACLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVKQNNRCPLCQQDWVVQ 77 (81)
T ss_dssp CCSCBTTTTBCTTSCCTTHHHHTCTTTCCEEEETTSCEEEHHHHHHHTTTCCBCTTTCCBCCEE
T ss_pred CCCCCcccChhhhccCcccccccCCCceEEEeCCCCCccChHHHHHHHHhCCCCCCcCCCcchh
Confidence 35678888888743 34466666 999999999999999999999999988643
No 13
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.35 E-value=1.4e-13 Score=101.68 Aligned_cols=54 Identities=35% Similarity=0.890 Sum_probs=46.6
Q ss_pred cCCcccccccccccccCCccEEeCCCCccChhhHHHHHhcCCCCCCcccccCCCCcch
Q 021283 228 LGHDAECAICKENLLVGDKMQELPCKHTFHPPCLKPWLDEHNSCPICRHELQTDDHAY 285 (314)
Q Consensus 228 ~~~~~~C~ICLe~~~~~~~v~~LPCgH~FH~~CI~~WL~~~~tCPvCR~~l~~~d~~~ 285 (314)
..+...|+||++.+.. +.+||+|.||..||..|+..+.+||+||.++...+..+
T Consensus 12 ~~~~~~C~IC~~~~~~----~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~ 65 (70)
T 2ecn_A 12 LTDEEECCICMDGRAD----LILPCAHSFCQKCIDKWSDRHRNCPICRLQMTGANESS 65 (70)
T ss_dssp CCCCCCCSSSCCSCCS----EEETTTEEECHHHHHHSSCCCSSCHHHHHCTTCCCCCC
T ss_pred CCCCCCCeeCCcCccC----cccCCCCcccHHHHHHHHHCcCcCCCcCCcccCCCccc
Confidence 3456799999999853 78999999999999999999999999999998766543
No 14
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.34 E-value=6.1e-13 Score=99.03 Aligned_cols=54 Identities=28% Similarity=0.559 Sum_probs=45.2
Q ss_pred cCCcccccccccccccCCccEEe-CCCCccChhhHHHHHhcCCCCCCcccccCCCCcc
Q 021283 228 LGHDAECAICKENLLVGDKMQEL-PCKHTFHPPCLKPWLDEHNSCPICRHELQTDDHA 284 (314)
Q Consensus 228 ~~~~~~C~ICLe~~~~~~~v~~L-PCgH~FH~~CI~~WL~~~~tCPvCR~~l~~~d~~ 284 (314)
+.+...|+||++.+.. ++.+ +|+|.||..||..|+..+..||+||.++...+..
T Consensus 12 ~~~~~~C~IC~~~~~~---p~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~~~~ 66 (72)
T 2djb_A 12 LTPYILCSICKGYLID---ATTITECLHTFCKSCIVRHFYYSNRCPKCNIVVHQTQPL 66 (72)
T ss_dssp CCGGGSCTTTSSCCSS---CEECSSSCCEECHHHHHHHHHHCSSCTTTCCCCCSSCSC
T ss_pred cCCCCCCCCCChHHHC---cCEECCCCCHHHHHHHHHHHHcCCcCCCcCcccCccccc
Confidence 3456799999999843 4555 8999999999999999999999999999766543
No 15
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=99.32 E-value=9.3e-13 Score=110.27 Aligned_cols=50 Identities=30% Similarity=0.937 Sum_probs=44.1
Q ss_pred CcccccccccccccCCccEEeCCCCccChhhHHHHHhcCCCCCCcccccCCCC
Q 021283 230 HDAECAICKENLLVGDKMQELPCKHTFHPPCLKPWLDEHNSCPICRHELQTDD 282 (314)
Q Consensus 230 ~~~~C~ICLe~~~~~~~v~~LPCgH~FH~~CI~~WL~~~~tCPvCR~~l~~~d 282 (314)
++..|+||++.|. .++.+||||.||..||..|+..+.+||+||.++....
T Consensus 52 ~~~~C~iC~~~~~---~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~ 101 (138)
T 4ayc_A 52 NELQCIICSEYFI---EAVTLNCAHSFCSYCINEWMKRKIECPICRKDIKSKT 101 (138)
T ss_dssp HHSBCTTTCSBCS---SEEEETTSCEEEHHHHHHHTTTCSBCTTTCCBCCCEE
T ss_pred ccCCCcccCcccC---CceECCCCCCccHHHHHHHHHcCCcCCCCCCcCCCCC
Confidence 3568999999984 4678999999999999999999999999999997543
No 16
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=99.32 E-value=2.4e-12 Score=99.85 Aligned_cols=77 Identities=19% Similarity=0.497 Sum_probs=55.2
Q ss_pred cCCcccccccccccccCCccEEeC-CCCccChhhHHHHHhcC--CCCCCcccccC-CCCcchhhHHHHHHHHHHHHhhhc
Q 021283 228 LGHDAECAICKENLLVGDKMQELP-CKHTFHPPCLKPWLDEH--NSCPICRHELQ-TDDHAYESWKEREKEAQEERKGAA 303 (314)
Q Consensus 228 ~~~~~~C~ICLe~~~~~~~v~~LP-CgH~FH~~CI~~WL~~~--~tCPvCR~~l~-~~d~~~~~~~~r~~~~~~e~~~~~ 303 (314)
+.++..|+||++.|. .++.+| |||.||..||..|+..+ ..||+||.++. .++.......+.--+.-...++..
T Consensus 10 ~~~~~~C~IC~~~~~---~p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~~~~~~~~n~~l~~~i~~~~~~~~~~ 86 (92)
T 3ztg_A 10 IPDELLCLICKDIMT---DAVVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDVSPDALIANKFLRQAVNNFKNETGYT 86 (92)
T ss_dssp CCTTTEETTTTEECS---SCEECTTTCCEECHHHHHHHHHHCTTCCCTTTCCSSCCTTSCEECHHHHHHHHHHHHHHTCC
T ss_pred CCcCCCCCCCChhhc---CceECCCCCCHHHHHHHHHHHHhcCCCcCcCCCCcCCCccccCcCHHHHHHHHHHHHHHhHH
Confidence 345789999999984 467899 99999999999999754 59999999974 444444444444444444555555
Q ss_pred cccC
Q 021283 304 NAVR 307 (314)
Q Consensus 304 ~~~~ 307 (314)
+.+|
T Consensus 87 ~~~r 90 (92)
T 3ztg_A 87 KRLR 90 (92)
T ss_dssp CCCC
T ss_pred hhhh
Confidence 5544
No 17
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=99.32 E-value=7.5e-13 Score=106.90 Aligned_cols=50 Identities=28% Similarity=0.664 Sum_probs=42.8
Q ss_pred CcccccccccccccC---------------CccEEeCCCCccChhhHHHHHhcCCCCCCcccccC
Q 021283 230 HDAECAICKENLLVG---------------DKMQELPCKHTFHPPCLKPWLDEHNSCPICRHELQ 279 (314)
Q Consensus 230 ~~~~C~ICLe~~~~~---------------~~v~~LPCgH~FH~~CI~~WL~~~~tCPvCR~~l~ 279 (314)
++..|+||++.|... ..++.++|+|.||..||.+||..+.+||+||.++.
T Consensus 36 ~~d~CaIC~~~~~~~c~~C~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~~CP~Cr~~~~ 100 (106)
T 3dpl_R 36 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNREWE 100 (106)
T ss_dssp CSCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEETTSCEEEHHHHHHHHTTCSBCSSSCSBCC
T ss_pred CCCCCccCChhHhCcCchhhccccccCCccceEeecccCcEECHHHHHHHHHcCCcCcCCCCcce
Confidence 467899999998643 13567899999999999999999999999999864
No 18
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.31 E-value=1.2e-12 Score=100.25 Aligned_cols=55 Identities=29% Similarity=0.564 Sum_probs=46.4
Q ss_pred cCCcccccccccccccCCc-cEEeCCCCccChhhHHHHHhcC---CCCCCcccccCCCC
Q 021283 228 LGHDAECAICKENLLVGDK-MQELPCKHTFHPPCLKPWLDEH---NSCPICRHELQTDD 282 (314)
Q Consensus 228 ~~~~~~C~ICLe~~~~~~~-v~~LPCgH~FH~~CI~~WL~~~---~tCPvCR~~l~~~d 282 (314)
..+...|+||++.|...+. ++.++|||.||..||..|+..+ ..||+||..+...+
T Consensus 12 ~~~~~~C~IC~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~ 70 (88)
T 2ct2_A 12 LREVLECPICMESFTEEQLRPKLLHCGHTICRQCLEKLLASSINGVRCPFCSKITRITS 70 (88)
T ss_dssp CCSCCBCTTTCCBCCTTSSCEEECSSSCEEEHHHHHHHHHHCSSCBCCTTTCCCBCCSS
T ss_pred ccCCCCCccCCccccccCCCeEECCCCChhhHHHHHHHHHcCCCCcCCCCCCCcccchh
Confidence 3457899999999976543 7888999999999999999976 79999999886553
No 19
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=99.30 E-value=9.5e-13 Score=96.47 Aligned_cols=49 Identities=29% Similarity=0.837 Sum_probs=42.9
Q ss_pred CcccccccccccccCCccEEeCCCCccChhhHHHHHhcCCCCCCcccccCC
Q 021283 230 HDAECAICKENLLVGDKMQELPCKHTFHPPCLKPWLDEHNSCPICRHELQT 280 (314)
Q Consensus 230 ~~~~C~ICLe~~~~~~~v~~LPCgH~FH~~CI~~WL~~~~tCPvCR~~l~~ 280 (314)
.+..|+||++.+. +.++.+||||.||..||..|+..+.+||+||.++..
T Consensus 4 ~~~~C~IC~~~~~--~~~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 52 (68)
T 1chc_A 4 VAERCPICLEDPS--NYSMALPCLHAFCYVCITRWIRQNPTCPLCKVPVES 52 (68)
T ss_dssp CCCCCSSCCSCCC--SCEEETTTTEEESTTHHHHHHHHSCSTTTTCCCCCC
T ss_pred CCCCCeeCCcccc--CCcEecCCCCeeHHHHHHHHHhCcCcCcCCChhhHh
Confidence 3578999999984 345789999999999999999999999999998854
No 20
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.30 E-value=7.9e-13 Score=98.18 Aligned_cols=48 Identities=35% Similarity=0.684 Sum_probs=42.7
Q ss_pred CcccccccccccccCCccEEeCCCCccChhhHHHHHhcCCCCCCcccccCC
Q 021283 230 HDAECAICKENLLVGDKMQELPCKHTFHPPCLKPWLDEHNSCPICRHELQT 280 (314)
Q Consensus 230 ~~~~C~ICLe~~~~~~~v~~LPCgH~FH~~CI~~WL~~~~tCPvCR~~l~~ 280 (314)
++..|+||++.+. ..+.+||+|.||..||..|+..+.+||+||..+..
T Consensus 14 ~~~~C~IC~~~~~---~~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~ 61 (71)
T 2d8t_A 14 TVPECAICLQTCV---HPVSLPCKHVFCYLCVKGASWLGKRCALCRQEIPE 61 (71)
T ss_dssp SCCBCSSSSSBCS---SEEEETTTEEEEHHHHHHCTTCSSBCSSSCCBCCH
T ss_pred CCCCCccCCcccC---CCEEccCCCHHHHHHHHHHHHCCCcCcCcCchhCH
Confidence 4679999999983 46788999999999999999999999999999863
No 21
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=99.29 E-value=2e-12 Score=97.31 Aligned_cols=55 Identities=20% Similarity=0.393 Sum_probs=46.2
Q ss_pred CCcccccccccccccCCccEEeCCCCccChhhHHHHHhc-CCCCCCcccccCCCCcchh
Q 021283 229 GHDAECAICKENLLVGDKMQELPCKHTFHPPCLKPWLDE-HNSCPICRHELQTDDHAYE 286 (314)
Q Consensus 229 ~~~~~C~ICLe~~~~~~~v~~LPCgH~FH~~CI~~WL~~-~~tCPvCR~~l~~~d~~~~ 286 (314)
.++..|+||++.|. .++.++|||.||..||..|+.. +.+||+||.++...+....
T Consensus 6 ~~~~~C~IC~~~~~---~Pv~~~CgH~fc~~Ci~~~~~~~~~~CP~C~~~~~~~~l~~n 61 (78)
T 1t1h_A 6 PEYFRCPISLELMK---DPVIVSTGQTYERSSIQKWLDAGHKTCPKSQETLLHAGLTPN 61 (78)
T ss_dssp SSSSSCTTTSCCCS---SEEEETTTEEEEHHHHHHHHTTTCCBCTTTCCBCSSCCCEEC
T ss_pred cccCCCCCcccccc---CCEEcCCCCeecHHHHHHHHHHCcCCCCCCcCCCChhhCccC
Confidence 45789999999984 4677899999999999999986 7899999999976654433
No 22
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.29 E-value=1.5e-12 Score=96.50 Aligned_cols=52 Identities=25% Similarity=0.642 Sum_probs=44.0
Q ss_pred cCCcccccccccccccCCccEEeCCCCccChhhHHHHHh---cCCCCCCcccccCCCC
Q 021283 228 LGHDAECAICKENLLVGDKMQELPCKHTFHPPCLKPWLD---EHNSCPICRHELQTDD 282 (314)
Q Consensus 228 ~~~~~~C~ICLe~~~~~~~v~~LPCgH~FH~~CI~~WL~---~~~tCPvCR~~l~~~d 282 (314)
+.++..|+||++.+. .++.++|||.||..||..|+. ....||+||.++..++
T Consensus 17 ~~~~~~C~IC~~~~~---~~~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~ 71 (73)
T 2ysl_A 17 LQEEVICPICLDILQ---KPVTIDCGHNFCLKCITQIGETSCGFFKCPLCKTSVRKNA 71 (73)
T ss_dssp CCCCCBCTTTCSBCS---SEEECTTCCEEEHHHHHHHCSSSCSCCCCSSSCCCCCCCC
T ss_pred CccCCEeccCCcccC---CeEEcCCCChhhHHHHHHHHHcCCCCCCCCCCCCcCCccc
Confidence 345789999999984 467789999999999999997 4568999999997654
No 23
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=99.29 E-value=8.7e-13 Score=104.67 Aligned_cols=61 Identities=30% Similarity=0.650 Sum_probs=48.5
Q ss_pred cCCcccccccccccccCCccEE-eCCCCccChhhHHHHHhcC-CCCCCcccccCCCCcchhhHHHH
Q 021283 228 LGHDAECAICKENLLVGDKMQE-LPCKHTFHPPCLKPWLDEH-NSCPICRHELQTDDHAYESWKER 291 (314)
Q Consensus 228 ~~~~~~C~ICLe~~~~~~~v~~-LPCgH~FH~~CI~~WL~~~-~tCPvCR~~l~~~d~~~~~~~~r 291 (314)
+.++..|+||++.|. .++. ++|||.||..||..|+... .+||+||.++...+.....+.+.
T Consensus 19 l~~~~~C~IC~~~~~---~p~~~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~~~l~~~~~~~~ 81 (100)
T 3lrq_A 19 IAEVFRCFICMEKLR---DARLCPHCSKLCCFSCIRRWLTEQRAQCPHCRAPLQLRELVNCRWAEE 81 (100)
T ss_dssp HHHHTBCTTTCSBCS---SEEECTTTCCEEEHHHHHHHHHHTCSBCTTTCCBCCGGGCEECTTHHH
T ss_pred CCCCCCCccCCcccc---CccccCCCCChhhHHHHHHHHHHCcCCCCCCCCcCCHHHhHhhHHHHH
Confidence 345789999999994 3566 8999999999999999987 69999999997665544444333
No 24
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.29 E-value=1.6e-12 Score=95.06 Aligned_cols=51 Identities=22% Similarity=0.570 Sum_probs=42.8
Q ss_pred CCcccccccccccccCCccEEeCCCCccChhhHHHHHh-cCCCCCCcccccCCCC
Q 021283 229 GHDAECAICKENLLVGDKMQELPCKHTFHPPCLKPWLD-EHNSCPICRHELQTDD 282 (314)
Q Consensus 229 ~~~~~C~ICLe~~~~~~~v~~LPCgH~FH~~CI~~WL~-~~~tCPvCR~~l~~~d 282 (314)
.+...|+||++.+. .++.++|||.||..||..|+. ....||+||.++..++
T Consensus 13 ~~~~~C~IC~~~~~---~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~ 64 (66)
T 2ecy_A 13 EDKYKCEKCHLVLC---SPKQTECGHRFCESCMAALLSSSSPKCTACQESIVKDK 64 (66)
T ss_dssp CCCEECTTTCCEES---SCCCCSSSCCCCHHHHHHHHTTSSCCCTTTCCCCCTTT
T ss_pred CcCCCCCCCChHhc---CeeECCCCCHHHHHHHHHHHHhCcCCCCCCCcCCChhh
Confidence 45689999999984 345589999999999999995 5679999999987654
No 25
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=99.28 E-value=1.8e-12 Score=97.20 Aligned_cols=53 Identities=25% Similarity=0.659 Sum_probs=44.1
Q ss_pred cCCcccccccccccccCCccEEeC-CCCccChhhHHHHHhcC--CCCCCcccccCCCCc
Q 021283 228 LGHDAECAICKENLLVGDKMQELP-CKHTFHPPCLKPWLDEH--NSCPICRHELQTDDH 283 (314)
Q Consensus 228 ~~~~~~C~ICLe~~~~~~~v~~LP-CgH~FH~~CI~~WL~~~--~tCPvCR~~l~~~d~ 283 (314)
+.++..|+||++.|. .++.+| |||.||..||..|+..+ .+||+||.++...+.
T Consensus 12 ~~~~~~C~IC~~~~~---~p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~~~~~ 67 (74)
T 2yur_A 12 IPDELLCLICKDIMT---DAVVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDVSPDA 67 (74)
T ss_dssp SCGGGSCSSSCCCCT---TCEECSSSCCEECTTHHHHHHHHSSSSCCSSSCCSSCCTTT
T ss_pred CCCCCCCcCCChHHh---CCeEcCCCCCHHHHHHHHHHHHhcCCCcCCCCCCcCCCccc
Confidence 345679999999984 467799 99999999999999865 689999998765543
No 26
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.27 E-value=3e-12 Score=97.25 Aligned_cols=48 Identities=21% Similarity=0.485 Sum_probs=42.7
Q ss_pred CCcccccccccccccCCccEEeCCCCccChhhHHHHHhcCCCCCCcccccC
Q 021283 229 GHDAECAICKENLLVGDKMQELPCKHTFHPPCLKPWLDEHNSCPICRHELQ 279 (314)
Q Consensus 229 ~~~~~C~ICLe~~~~~~~v~~LPCgH~FH~~CI~~WL~~~~tCPvCR~~l~ 279 (314)
.....|+||++.+. .++.+||||.||..||..|+....+||+||.++.
T Consensus 13 ~~~~~C~IC~~~~~---~p~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~ 60 (81)
T 2csy_A 13 EIPFRCFICRQAFQ---NPVVTKCRHYFCESCALEHFRATPRCYICDQPTG 60 (81)
T ss_dssp CCCSBCSSSCSBCC---SEEECTTSCEEEHHHHHHHHHHCSBCSSSCCBCC
T ss_pred CCCCCCcCCCchhc---CeeEccCCCHhHHHHHHHHHHCCCcCCCcCcccc
Confidence 34679999999984 3667999999999999999999999999999986
No 27
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.23 E-value=5.2e-12 Score=95.64 Aligned_cols=52 Identities=25% Similarity=0.655 Sum_probs=44.1
Q ss_pred cCCcccccccccccccCCccEEeCCCCccChhhHHHHHhc------CCCCCCcccccCCCC
Q 021283 228 LGHDAECAICKENLLVGDKMQELPCKHTFHPPCLKPWLDE------HNSCPICRHELQTDD 282 (314)
Q Consensus 228 ~~~~~~C~ICLe~~~~~~~v~~LPCgH~FH~~CI~~WL~~------~~tCPvCR~~l~~~d 282 (314)
+.++..|+||++.+. .++.+||+|.||..||..|+.. ...||+||.++..++
T Consensus 16 ~~~~~~C~IC~~~~~---~p~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~~ 73 (85)
T 2ecw_A 16 IKEEVTCPICLELLK---EPVSADCNHSFCRACITLNYESNRNTDGKGNCPVCRVPYPFGN 73 (85)
T ss_dssp CCTTTSCTTTCSCCS---SCEECTTSCCBCHHHHHHHHHHSBCTTSCBCCTTTCCCCCTTC
T ss_pred CccCCCCcCCChhhC---cceeCCCCCHHHHHHHHHHHHhccCCCCCCCCCCCCCcCCHHh
Confidence 345679999999984 3567999999999999999987 679999999987654
No 28
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.23 E-value=3.6e-12 Score=97.91 Aligned_cols=53 Identities=25% Similarity=0.666 Sum_probs=44.2
Q ss_pred CcccccccccccccCCccEEeCCC-----CccChhhHHHHHhcC--CCCCCcccccCCCCc
Q 021283 230 HDAECAICKENLLVGDKMQELPCK-----HTFHPPCLKPWLDEH--NSCPICRHELQTDDH 283 (314)
Q Consensus 230 ~~~~C~ICLe~~~~~~~v~~LPCg-----H~FH~~CI~~WL~~~--~tCPvCR~~l~~~d~ 283 (314)
++..|.||++.+..++.+ .+||+ |.||..||.+||..+ .+||+||..+.....
T Consensus 14 ~~~~C~IC~~~~~~~~~l-~~pC~C~Gs~h~fH~~Cl~~Wl~~~~~~~CplCr~~~~~~~~ 73 (80)
T 2d8s_A 14 SQDICRICHCEGDDESPL-ITPCHCTGSLHFVHQACLQQWIKSSDTRCCELCKYEFIMETK 73 (80)
T ss_dssp TSCCCSSSCCCCCSSSCE-ECSSSCCSSSCCEETTHHHHHHHHHCCSBCSSSCCBCCCCCC
T ss_pred CCCCCeEcCccccCCCee-EeccccCCcCCeeCHHHHHHHHhhCCCCCCCCCCCeeecCcc
Confidence 457899999999766654 68996 999999999999865 499999999976543
No 29
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=99.22 E-value=1.8e-12 Score=97.42 Aligned_cols=52 Identities=27% Similarity=0.622 Sum_probs=43.7
Q ss_pred cCCcccccccccccccCCccEEeCCCCccChhhHHHHHhc-------CCCCCCcccccCCCC
Q 021283 228 LGHDAECAICKENLLVGDKMQELPCKHTFHPPCLKPWLDE-------HNSCPICRHELQTDD 282 (314)
Q Consensus 228 ~~~~~~C~ICLe~~~~~~~v~~LPCgH~FH~~CI~~WL~~-------~~tCPvCR~~l~~~d 282 (314)
+.++..|+||++.|. .++.+||||.||..||..|+.. ...||+||.++...+
T Consensus 9 ~~~~~~C~IC~~~~~---~p~~l~CgH~fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~~~~~ 67 (79)
T 2egp_A 9 VQEEVTCPICLELLT---EPLSLDCGHSLCRACITVSNKEAVTSMGGKSSCPVCGISYSFEH 67 (79)
T ss_dssp CCCCCEETTTTEECS---SCCCCSSSCCCCHHHHSCCCCCCSSSCCCCCCCSSSCCCCCSSG
T ss_pred cccCCCCcCCCcccC---CeeECCCCCHHHHHHHHHHHHhcccCCCCCCcCCCCCCcCCHhh
Confidence 445789999999984 3566899999999999999986 668999999987543
No 30
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=99.21 E-value=6.3e-12 Score=99.00 Aligned_cols=52 Identities=23% Similarity=0.573 Sum_probs=43.9
Q ss_pred CcccccccccccccCCccEEe-CCCCccChhhHHHHHhcCCCCCCcccccCCCCcc
Q 021283 230 HDAECAICKENLLVGDKMQEL-PCKHTFHPPCLKPWLDEHNSCPICRHELQTDDHA 284 (314)
Q Consensus 230 ~~~~C~ICLe~~~~~~~v~~L-PCgH~FH~~CI~~WL~~~~tCPvCR~~l~~~d~~ 284 (314)
+...|+||++.|. .++.+ +|||.||..||..|+..+.+||+||..+...+..
T Consensus 21 ~~~~C~IC~~~~~---~p~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~~l~ 73 (99)
T 2y43_A 21 DLLRCGICFEYFN---IAMIIPQCSHNYCSLCIRKFLSYKTQCPTCCVTVTEPDLK 73 (99)
T ss_dssp HHTBCTTTCSBCS---SEEECTTTCCEEEHHHHHHHHTTCCBCTTTCCBCCGGGCE
T ss_pred CCCCcccCChhhC---CcCEECCCCCHhhHHHHHHHHHCCCCCCCCCCcCChhhCC
Confidence 3679999999984 35555 8999999999999999999999999999764443
No 31
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.21 E-value=6.1e-12 Score=95.25 Aligned_cols=52 Identities=33% Similarity=0.748 Sum_probs=44.1
Q ss_pred cCCcccccccccccccCCccEEeCCCCccChhhHHHHHhc------CCCCCCcccccCCCC
Q 021283 228 LGHDAECAICKENLLVGDKMQELPCKHTFHPPCLKPWLDE------HNSCPICRHELQTDD 282 (314)
Q Consensus 228 ~~~~~~C~ICLe~~~~~~~v~~LPCgH~FH~~CI~~WL~~------~~tCPvCR~~l~~~d 282 (314)
+.+...|+||++.+. .++.+||||.||..||..|+.. ...||+||..+...+
T Consensus 16 ~~~~~~C~IC~~~~~---~p~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~~ 73 (85)
T 2ecv_A 16 VKEEVTCPICLELLT---QPLSLDCGHSFCQACLTANHKKSMLDKGESSCPVCRISYQPEN 73 (85)
T ss_dssp CCCCCCCTTTCSCCS---SCBCCSSSCCBCTTHHHHHHHHHHHTTSCCCCTTTCCSSCSSS
T ss_pred ccCCCCCCCCCcccC---CceeCCCCCHHHHHHHHHHHHHhhcCCCCCcCCCCCCccCHHh
Confidence 345789999999984 3566899999999999999987 779999999987654
No 32
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=99.20 E-value=1.6e-12 Score=106.79 Aligned_cols=50 Identities=28% Similarity=0.704 Sum_probs=1.1
Q ss_pred CcccccccccccccC-------------C--ccEEeCCCCccChhhHHHHHhcCCCCCCcccccC
Q 021283 230 HDAECAICKENLLVG-------------D--KMQELPCKHTFHPPCLKPWLDEHNSCPICRHELQ 279 (314)
Q Consensus 230 ~~~~C~ICLe~~~~~-------------~--~v~~LPCgH~FH~~CI~~WL~~~~tCPvCR~~l~ 279 (314)
.+..|+||++.|... + .++.++|+|.||..||.+||..+.+||+||.++.
T Consensus 47 ~~d~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~C~H~FH~~CI~~Wl~~~~~CP~Cr~~~~ 111 (117)
T 4a0k_B 47 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNREWE 111 (117)
T ss_dssp CC---------------------------------------------------------------
T ss_pred CCCcCeECChhhcCcChhhhcccccccccccccccCCcCceEcHHHHHHHHHcCCcCCCCCCeee
Confidence 467999999999642 1 2344689999999999999999999999999864
No 33
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=99.19 E-value=9.8e-12 Score=101.88 Aligned_cols=48 Identities=27% Similarity=0.636 Sum_probs=42.0
Q ss_pred CcccccccccccccCCccEEeCCCCccChhhHHHHHhcCC-CCCCcccccCC
Q 021283 230 HDAECAICKENLLVGDKMQELPCKHTFHPPCLKPWLDEHN-SCPICRHELQT 280 (314)
Q Consensus 230 ~~~~C~ICLe~~~~~~~v~~LPCgH~FH~~CI~~WL~~~~-tCPvCR~~l~~ 280 (314)
++..|+||++.|. .++.+||||.||..||..|+..+. .||+||.++..
T Consensus 51 ~~~~C~IC~~~~~---~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 99 (124)
T 3fl2_A 51 ETFQCICCQELVF---RPITTVCQHNVCKDCLDRSFRAQVFSCPACRYDLGR 99 (124)
T ss_dssp HHTBCTTTSSBCS---SEEECTTSCEEEHHHHHHHHHTTCCBCTTTCCBCCT
T ss_pred cCCCCCcCChHHc---CcEEeeCCCcccHHHHHHHHhHCcCCCCCCCccCCC
Confidence 4679999999984 467789999999999999998554 99999999976
No 34
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=99.18 E-value=9.9e-12 Score=99.48 Aligned_cols=51 Identities=24% Similarity=0.720 Sum_probs=44.0
Q ss_pred cCCcccccccccccccCCccEEe-CCCCccChhhHHHHHhcCCCCCCcccccCCC
Q 021283 228 LGHDAECAICKENLLVGDKMQEL-PCKHTFHPPCLKPWLDEHNSCPICRHELQTD 281 (314)
Q Consensus 228 ~~~~~~C~ICLe~~~~~~~v~~L-PCgH~FH~~CI~~WL~~~~tCPvCR~~l~~~ 281 (314)
+.++..|+||++.|. .++.+ +|||.||..||..|+..+.+||+||..+...
T Consensus 12 ~~~~~~C~IC~~~~~---~p~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~ 63 (108)
T 2ckl_A 12 LNPHLMCVLCGGYFI---DATTIIECLHSFCKTCIVRYLETSKYCPICDVQVHKT 63 (108)
T ss_dssp HGGGTBCTTTSSBCS---SEEEETTTCCEEEHHHHHHHHTSCSBCTTTCCBSCSS
T ss_pred cCCcCCCccCChHHh---CcCEeCCCCChhhHHHHHHHHHhCCcCcCCCcccccc
Confidence 345789999999984 35565 9999999999999999999999999999765
No 35
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.17 E-value=1.5e-11 Score=88.97 Aligned_cols=44 Identities=30% Similarity=0.699 Sum_probs=37.8
Q ss_pred cCCcccccccccccccCCccEEeCCCCccChhhHHHHHh---cCCCCCCc
Q 021283 228 LGHDAECAICKENLLVGDKMQELPCKHTFHPPCLKPWLD---EHNSCPIC 274 (314)
Q Consensus 228 ~~~~~~C~ICLe~~~~~~~v~~LPCgH~FH~~CI~~WL~---~~~tCPvC 274 (314)
+.++..|+||++.+. .++.++|||.||..||..|+. ....||+|
T Consensus 17 ~~~~~~C~IC~~~~~---~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C 63 (63)
T 2ysj_A 17 LQEEVICPICLDILQ---KPVTIDCGHNFCLKCITQIGETSCGFFKCPLC 63 (63)
T ss_dssp CCCCCBCTTTCSBCS---SCEECTTSSEECHHHHHHHHHHCSSCCCCSCC
T ss_pred CccCCCCCcCCchhC---CeEEeCCCCcchHHHHHHHHHcCCCCCcCcCC
Confidence 455789999999984 467789999999999999998 45689998
No 36
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=99.16 E-value=1.1e-11 Score=101.11 Aligned_cols=54 Identities=26% Similarity=0.621 Sum_probs=46.2
Q ss_pred CcccccccccccccC----CccEEeCCCCccChhhHHHHHhcCCCCCCcccccCCCCc
Q 021283 230 HDAECAICKENLLVG----DKMQELPCKHTFHPPCLKPWLDEHNSCPICRHELQTDDH 283 (314)
Q Consensus 230 ~~~~C~ICLe~~~~~----~~v~~LPCgH~FH~~CI~~WL~~~~tCPvCR~~l~~~d~ 283 (314)
++..|+||++.|... ..++.++|||.||..||..|+..+.+||+||..+...+.
T Consensus 6 ~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~l 63 (133)
T 4ap4_A 6 GTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHKRY 63 (133)
T ss_dssp CSCBCTTTCCBHHHHHHTTCCEEEETTCCEEEHHHHHHHHTTCSBCTTTCCBCTTTCE
T ss_pred CCCCCcccChhhhCccccccCeEecCCCChhhHHHHHHHHHhCCCCCCCCCcCccccc
Confidence 467999999998642 345889999999999999999999999999999976554
No 37
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.15 E-value=2.1e-11 Score=88.79 Aligned_cols=53 Identities=23% Similarity=0.508 Sum_probs=42.3
Q ss_pred ccccccccc-ccccCCc-cEEeCCCCccChhhHHHHHhc-CCCCCCcccccCCCCc
Q 021283 231 DAECAICKE-NLLVGDK-MQELPCKHTFHPPCLKPWLDE-HNSCPICRHELQTDDH 283 (314)
Q Consensus 231 ~~~C~ICLe-~~~~~~~-v~~LPCgH~FH~~CI~~WL~~-~~tCPvCR~~l~~~d~ 283 (314)
+..|+||++ .+..... .+.++|||.||..||..|+.. ...||+||.++...+.
T Consensus 3 ~~~C~IC~~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~ 58 (65)
T 1g25_A 3 DQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGAGNCPECGTPLRKSNF 58 (65)
T ss_dssp TTCCSTTTTHHHHCSSCCEEECTTCCCEEHHHHHHHHHTTSSSCTTTCCCCSSCCC
T ss_pred CCcCCcCCCCccCCCccCeecCCCCCHhHHHHHHHHHHcCCCcCCCCCCccccccc
Confidence 578999999 6754332 356899999999999999764 4689999999976553
No 38
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.15 E-value=1.2e-11 Score=98.91 Aligned_cols=51 Identities=25% Similarity=0.664 Sum_probs=42.6
Q ss_pred CcccccccccccccCCccEEeCCCCccChhhHHHHHhcCC---CCCCcccccCCCCc
Q 021283 230 HDAECAICKENLLVGDKMQELPCKHTFHPPCLKPWLDEHN---SCPICRHELQTDDH 283 (314)
Q Consensus 230 ~~~~C~ICLe~~~~~~~v~~LPCgH~FH~~CI~~WL~~~~---tCPvCR~~l~~~d~ 283 (314)
+...|+||++.+. .++.+||||.||..||..|+..+. +||+||.++...+.
T Consensus 20 ~~~~C~IC~~~~~---~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~~ 73 (112)
T 1jm7_A 20 KILECPICLELIK---EPVSTKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDITKRSL 73 (112)
T ss_dssp HHTSCSSSCCCCS---SCCBCTTSCCCCSHHHHHHHHSSSSSCCCTTTSCCCCTTTC
T ss_pred CCCCCcccChhhc---CeEECCCCCHHHHHHHHHHHHhCCCCCCCcCCCCcCCHhhc
Confidence 3579999999984 355689999999999999998654 89999999876553
No 39
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=99.14 E-value=5.5e-11 Score=94.48 Aligned_cols=70 Identities=13% Similarity=0.040 Sum_probs=54.2
Q ss_pred CCcccccccccccccCCccEEeCCC-CccChhhHHHHHhcCCCCCCcccccCCCCcchhhHHHHHHHHHHHHhh
Q 021283 229 GHDAECAICKENLLVGDKMQELPCK-HTFHPPCLKPWLDEHNSCPICRHELQTDDHAYESWKEREKEAQEERKG 301 (314)
Q Consensus 229 ~~~~~C~ICLe~~~~~~~v~~LPCg-H~FH~~CI~~WL~~~~tCPvCR~~l~~~d~~~~~~~~r~~~~~~e~~~ 301 (314)
.+...||||++.| ..++.++|| |.|++.||..||..+.+||+||.++...+.......++.-+.=..+++
T Consensus 20 p~~~~CpI~~~~m---~dPV~~~cG~htf~r~cI~~~l~~~~~cP~~~~~l~~~~L~pn~~Lk~~I~~~~~~~~ 90 (98)
T 1wgm_A 20 CDEFLDPIMSTLM---CDPVVLPSSRVTVDRSTIARHLLSDQTDPFNRSPLTMDQIRPNTELKEKIQRWLAERK 90 (98)
T ss_dssp CTTTBCTTTCSBC---SSEEECTTTCCEEEHHHHHHHTTTSCBCTTTCSBCCTTTSEECHHHHHHHHHHHHHST
T ss_pred cHhcCCcCccccc---cCCeECCCCCeEECHHHHHHHHHhCCCCCCCCCCCChhhceEcHHHHHHHHHHHHHcc
Confidence 4578999999999 457889999 999999999999988999999999987765544444444433333433
No 40
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=99.14 E-value=3.9e-11 Score=92.72 Aligned_cols=55 Identities=11% Similarity=0.056 Sum_probs=47.2
Q ss_pred CCcccccccccccccCCccEEeCCCCccChhhHHHHHhcCCCCCCcccccCCCCcchh
Q 021283 229 GHDAECAICKENLLVGDKMQELPCKHTFHPPCLKPWLDEHNSCPICRHELQTDDHAYE 286 (314)
Q Consensus 229 ~~~~~C~ICLe~~~~~~~v~~LPCgH~FH~~CI~~WL~~~~tCPvCR~~l~~~d~~~~ 286 (314)
.+...||||++.| ..++.++|||.|++.||..|+..+.+||+||.++...+....
T Consensus 12 p~~~~CpI~~~~m---~dPV~~~cGhtf~r~~I~~~l~~~~~cP~~~~~l~~~~l~pn 66 (85)
T 2kr4_A 12 PDEFRDPLMDTLM---TDPVRLPSGTVMDRSIILRHLLNSPTDPFNRQMLTESMLEPV 66 (85)
T ss_dssp CTTTBCTTTCSBC---SSEEECTTSCEEEHHHHHHHHHHCSBCTTTCCBCCGGGCEEC
T ss_pred chheECcccCchh---cCCeECCCCCEECHHHHHHHHhcCCCCCCCcCCCChHhcchH
Confidence 4578999999999 458889999999999999999989999999999976654333
No 41
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=99.12 E-value=5.6e-11 Score=94.77 Aligned_cols=58 Identities=10% Similarity=0.026 Sum_probs=49.0
Q ss_pred CCcccccccccccccCCccEEeCCCCccChhhHHHHHhcCCCCCCcccccCCCCcchhhHH
Q 021283 229 GHDAECAICKENLLVGDKMQELPCKHTFHPPCLKPWLDEHNSCPICRHELQTDDHAYESWK 289 (314)
Q Consensus 229 ~~~~~C~ICLe~~~~~~~v~~LPCgH~FH~~CI~~WL~~~~tCPvCR~~l~~~d~~~~~~~ 289 (314)
.+...||||++.| ..++.+||||.||+.||..||..+.+||+||.++...+.......
T Consensus 27 p~~~~CpI~~~~m---~dPV~~~cGhtf~r~~I~~~l~~~~~cP~~~~~l~~~~L~pn~~L 84 (100)
T 2kre_A 27 PDEFRDPLMDTLM---TDPVRLPSGTIMDRSIILRHLLNSPTDPFNRQTLTESMLEPVPEL 84 (100)
T ss_dssp STTTBCTTTCSBC---SSEEEETTTEEEEHHHHHHHTTSCSBCSSSCCBCCTTSSEECHHH
T ss_pred cHhhCCcCccCcc---cCCeECCCCCEEchHHHHHHHHcCCCCCCCCCCCChhhceECHHH
Confidence 4578999999999 458889999999999999999988999999999987665444333
No 42
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.12 E-value=2.6e-11 Score=85.73 Aligned_cols=44 Identities=32% Similarity=0.856 Sum_probs=36.7
Q ss_pred cCCcccccccccccccCCccEEeCCCCccChhhHHHHHh---cCCCCCCc
Q 021283 228 LGHDAECAICKENLLVGDKMQELPCKHTFHPPCLKPWLD---EHNSCPIC 274 (314)
Q Consensus 228 ~~~~~~C~ICLe~~~~~~~v~~LPCgH~FH~~CI~~WL~---~~~tCPvC 274 (314)
..+...|+||++.+.. ++.++|+|.||..||..|+. ...+||+|
T Consensus 12 ~~~~~~C~IC~~~~~~---p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C 58 (58)
T 2ecj_A 12 LQVEASCSVCLEYLKE---PVIIECGHNFCKACITRWWEDLERDFPCPVC 58 (58)
T ss_dssp SCCCCBCSSSCCBCSS---CCCCSSCCCCCHHHHHHHTTSSCCSCCCSCC
T ss_pred cccCCCCccCCcccCc---cEeCCCCCccCHHHHHHHHHhcCCCCCCCCC
Confidence 3457799999999853 46689999999999999954 56789998
No 43
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.11 E-value=3.5e-11 Score=91.15 Aligned_cols=55 Identities=22% Similarity=0.530 Sum_probs=44.9
Q ss_pred CcccccccccccccCCccEEeCCCCccChhhHHHHHhcC--CCCCCcccccCCCCcchh
Q 021283 230 HDAECAICKENLLVGDKMQELPCKHTFHPPCLKPWLDEH--NSCPICRHELQTDDHAYE 286 (314)
Q Consensus 230 ~~~~C~ICLe~~~~~~~v~~LPCgH~FH~~CI~~WL~~~--~tCPvCR~~l~~~d~~~~ 286 (314)
...+|+||.+.+..+... ..|+|.||..||.+||+.+ .+||+||.++..+..+++
T Consensus 14 ~i~~C~IC~~~i~~g~~C--~~C~h~fH~~Ci~kWl~~~~~~~CP~Cr~~w~~~~~~~~ 70 (74)
T 2ct0_A 14 AVKICNICHSLLIQGQSC--ETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWPHEIPKSG 70 (74)
T ss_dssp SSCBCSSSCCBCSSSEEC--SSSCCEECHHHHHHHSTTCSSCCCTTTCSCCCSCCCCCC
T ss_pred CCCcCcchhhHcccCCcc--CCCCchhhHHHHHHHHHhcCCCCCCCCcCcCCCCCCCCC
Confidence 357999999999765432 2699999999999999977 899999999876665543
No 44
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=99.11 E-value=2.2e-11 Score=99.09 Aligned_cols=53 Identities=26% Similarity=0.578 Sum_probs=44.6
Q ss_pred cCCcccccccccccccCCccEEeCCCCccChhhHHHHHhcCC-CCCCcccccCCCCc
Q 021283 228 LGHDAECAICKENLLVGDKMQELPCKHTFHPPCLKPWLDEHN-SCPICRHELQTDDH 283 (314)
Q Consensus 228 ~~~~~~C~ICLe~~~~~~~v~~LPCgH~FH~~CI~~WL~~~~-tCPvCR~~l~~~d~ 283 (314)
+.+...|+||++.+. .++.++|||.||..||..|+.... +||+||.++...+.
T Consensus 15 ~~~~~~C~IC~~~~~---~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~ 68 (118)
T 3hct_A 15 LESKYECPICLMALR---EAVQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLENQL 68 (118)
T ss_dssp CCGGGBCTTTCSBCS---SEEECTTSCEEEHHHHHHHHHHHCSBCTTTCCBCCGGGC
T ss_pred CCCCCCCCcCChhhc---CeEECCcCChhhHHHHHHHHhhCCCCCCCCCCCcCHHhc
Confidence 445789999999984 457789999999999999998765 99999999976543
No 45
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=99.09 E-value=2.4e-11 Score=104.33 Aligned_cols=49 Identities=29% Similarity=0.664 Sum_probs=41.3
Q ss_pred CcccccccccccccCCccEEe-CCCCccChhhHHHHHhc-CCCCCCcccccCCC
Q 021283 230 HDAECAICKENLLVGDKMQEL-PCKHTFHPPCLKPWLDE-HNSCPICRHELQTD 281 (314)
Q Consensus 230 ~~~~C~ICLe~~~~~~~v~~L-PCgH~FH~~CI~~WL~~-~~tCPvCR~~l~~~ 281 (314)
+...|+||++.|.. ++.+ ||||.||..||..|+.. +..||+||.++...
T Consensus 53 ~~~~C~IC~~~~~~---p~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 103 (165)
T 2ckl_B 53 SELMCPICLDMLKN---TMTTKECLHRFCADCIITALRSGNKECPTCRKKLVSK 103 (165)
T ss_dssp HHHBCTTTSSBCSS---EEEETTTCCEEEHHHHHHHHHTTCCBCTTTCCBCCSG
T ss_pred CCCCCcccChHhhC---cCEeCCCCChhHHHHHHHHHHhCcCCCCCCCCcCCCc
Confidence 35699999999852 4555 89999999999999997 77899999998643
No 46
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=99.09 E-value=3.3e-11 Score=102.66 Aligned_cols=49 Identities=29% Similarity=0.654 Sum_probs=42.8
Q ss_pred CcccccccccccccCCccEEeCCCCccChhhHHHHHhcCC-CCCCcccccCCC
Q 021283 230 HDAECAICKENLLVGDKMQELPCKHTFHPPCLKPWLDEHN-SCPICRHELQTD 281 (314)
Q Consensus 230 ~~~~C~ICLe~~~~~~~v~~LPCgH~FH~~CI~~WL~~~~-tCPvCR~~l~~~ 281 (314)
+...|+||++.|. .++.+||||.||..||..|+.... .||+||.++...
T Consensus 77 ~~~~C~IC~~~~~---~pv~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 126 (150)
T 1z6u_A 77 QSFMCVCCQELVY---QPVTTECFHNVCKDCLQRSFKAQVFSCPACRHDLGQN 126 (150)
T ss_dssp HHTBCTTTSSBCS---SEEECTTSCEEEHHHHHHHHHTTCCBCTTTCCBCCTT
T ss_pred cCCEeecCChhhc---CCEEcCCCCchhHHHHHHHHHhCCCcCCCCCccCCCC
Confidence 3579999999984 467799999999999999998654 899999999876
No 47
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=99.08 E-value=2.3e-11 Score=98.45 Aligned_cols=51 Identities=31% Similarity=0.588 Sum_probs=43.8
Q ss_pred CcccccccccccccCCccEEeCCCCccChhhHHHHHhc-CCCCCCcccccCCCCc
Q 021283 230 HDAECAICKENLLVGDKMQELPCKHTFHPPCLKPWLDE-HNSCPICRHELQTDDH 283 (314)
Q Consensus 230 ~~~~C~ICLe~~~~~~~v~~LPCgH~FH~~CI~~WL~~-~~tCPvCR~~l~~~d~ 283 (314)
++..|+||++.+. .++.++|||.||..||..|+.. ..+||+||.++...+.
T Consensus 22 ~~~~C~IC~~~~~---~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~ 73 (116)
T 1rmd_A 22 KSISCQICEHILA---DPVETSCKHLFCRICILRCLKVMGSYCPSCRYPCFPTDL 73 (116)
T ss_dssp HHTBCTTTCSBCS---SEEECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCGGGC
T ss_pred CCCCCCCCCcHhc---CcEEcCCCCcccHHHHHHHHhHCcCcCCCCCCCCCHhhc
Confidence 3579999999984 4667899999999999999986 7799999999876553
No 48
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=99.06 E-value=4.5e-11 Score=97.51 Aligned_cols=54 Identities=28% Similarity=0.705 Sum_probs=45.6
Q ss_pred CCccccccccccccc----CCccEEeCCCCccChhhHHHHHhcCCCCCCcccccCCCC
Q 021283 229 GHDAECAICKENLLV----GDKMQELPCKHTFHPPCLKPWLDEHNSCPICRHELQTDD 282 (314)
Q Consensus 229 ~~~~~C~ICLe~~~~----~~~v~~LPCgH~FH~~CI~~WL~~~~tCPvCR~~l~~~d 282 (314)
.+...|+||++.|.. +..++.++|||.||..||.+|+..+.+||+||.++..++
T Consensus 70 ~~~~~C~iC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~ 127 (133)
T 4ap4_A 70 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHKR 127 (133)
T ss_dssp SSSCBCTTTCCBHHHHHHTTCCEEEETTSBEEEHHHHHHHHHHCSBCTTTCCBCCGGG
T ss_pred CCCCCCCCCCCccccccccCcceEeCCCCChhhHHHHHHHHHcCCCCCCCCCcCChhc
Confidence 346789999999864 233478899999999999999999999999999997554
No 49
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=99.05 E-value=2.2e-11 Score=98.36 Aligned_cols=47 Identities=34% Similarity=0.923 Sum_probs=41.1
Q ss_pred cccccccccccccCCccEEeCCCCccChhhHHHHHhc-CCCCCCcccccCC
Q 021283 231 DAECAICKENLLVGDKMQELPCKHTFHPPCLKPWLDE-HNSCPICRHELQT 280 (314)
Q Consensus 231 ~~~C~ICLe~~~~~~~v~~LPCgH~FH~~CI~~WL~~-~~tCPvCR~~l~~ 280 (314)
+..|+||++.+. .++.++|||.||..||..|+.. ...||+||..+..
T Consensus 15 ~~~C~iC~~~~~---~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 62 (115)
T 3l11_A 15 ECQCGICMEILV---EPVTLPCNHTLCKPCFQSTVEKASLCCPFCRRRVSS 62 (115)
T ss_dssp HHBCTTTCSBCS---SCEECTTSCEECHHHHCCCCCTTTSBCTTTCCBCHH
T ss_pred CCCCccCCcccC---ceeEcCCCCHHhHHHHHHHHhHCcCCCCCCCcccCc
Confidence 579999999984 4778899999999999999976 6689999998853
No 50
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=99.01 E-value=1.4e-10 Score=88.42 Aligned_cols=55 Identities=27% Similarity=0.584 Sum_probs=42.8
Q ss_pred cCCcccccccccccccCCccEEeC--CCCccChhhHHHHHh-cCCCCCCcccccCCCCc
Q 021283 228 LGHDAECAICKENLLVGDKMQELP--CKHTFHPPCLKPWLD-EHNSCPICRHELQTDDH 283 (314)
Q Consensus 228 ~~~~~~C~ICLe~~~~~~~v~~LP--CgH~FH~~CI~~WL~-~~~tCPvCR~~l~~~d~ 283 (314)
+.++.+|+||++.+...+ +..+| |||.||..|+..|+. ....||+||.++...+.
T Consensus 8 ~~~~~~CpICle~~~~~d-~~~~p~~CGH~fC~~Cl~~~~~~~~~~CP~CR~~~~~~~~ 65 (78)
T 1e4u_A 8 KEDPVECPLCMEPLEIDD-INFFPCTCGYQICRFCWHRIRTDENGLCPACRKPYPEDPA 65 (78)
T ss_dssp CCCCCBCTTTCCBCCTTT-TTCCSSTTSCCCCHHHHHHHTTSSCSBCTTTCCBCSSCSS
T ss_pred cccCCcCCccCccCcccc-ccccccCCCCCcCHHHHHHHHhcCCCCCCCCCCccCCCch
Confidence 345789999999885433 33444 999999999999875 45689999999976554
No 51
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=98.98 E-value=1.7e-10 Score=97.38 Aligned_cols=52 Identities=27% Similarity=0.538 Sum_probs=43.6
Q ss_pred hcCCcccccccccccccCCccEEeCCCCccChhhHHHHHhcCC-CCCCcccccCCC
Q 021283 227 KLGHDAECAICKENLLVGDKMQELPCKHTFHPPCLKPWLDEHN-SCPICRHELQTD 281 (314)
Q Consensus 227 ~~~~~~~C~ICLe~~~~~~~v~~LPCgH~FH~~CI~~WL~~~~-tCPvCR~~l~~~ 281 (314)
.+.+...|+||++.|. .++.++|||.||..||..|+.... +||+||.++..+
T Consensus 27 ~l~~~~~C~IC~~~~~---~pv~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 79 (141)
T 3knv_A 27 KLEAKYLCSACRNVLR---RPFQAQCGHRYCSFCLASILSSGPQNCAACVHEGIYE 79 (141)
T ss_dssp GCCGGGBCTTTCSBCS---SEEECTTSCEEEHHHHHHHGGGSCEECHHHHHTTCCC
T ss_pred cCCcCcCCCCCChhhc---CcEECCCCCccCHHHHHHHHhcCCCCCCCCCCccccc
Confidence 4566789999999984 357789999999999999998665 899999987543
No 52
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.96 E-value=1.2e-10 Score=94.64 Aligned_cols=51 Identities=24% Similarity=0.537 Sum_probs=42.6
Q ss_pred CCcccccccccccccCCccEEe-CCCCccChhhHHHHHhcCCCCCCcccccCCCCcc
Q 021283 229 GHDAECAICKENLLVGDKMQEL-PCKHTFHPPCLKPWLDEHNSCPICRHELQTDDHA 284 (314)
Q Consensus 229 ~~~~~C~ICLe~~~~~~~v~~L-PCgH~FH~~CI~~WL~~~~tCPvCR~~l~~~d~~ 284 (314)
.+...|+||++.|. .++.+ +|||.||..||..|+. ..||+||.++...+..
T Consensus 20 ~~~~~C~IC~~~~~---~pv~~~~CgH~fC~~Ci~~~~~--~~CP~Cr~~~~~~~~~ 71 (117)
T 1jm7_B 20 EKLLRCSRCTNILR---EPVCLGGCEHIFCSNCVSDCIG--TGCPVCYTPAWIQDLK 71 (117)
T ss_dssp HHTTSCSSSCSCCS---SCBCCCSSSCCBCTTTGGGGTT--TBCSSSCCBCSCSSCC
T ss_pred hhCCCCCCCChHhh---CccEeCCCCCHHHHHHHHHHhc--CCCcCCCCcCcccccc
Confidence 34689999999984 45667 8999999999999997 7899999999655443
No 53
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=98.92 E-value=5.5e-10 Score=108.56 Aligned_cols=48 Identities=35% Similarity=0.835 Sum_probs=42.3
Q ss_pred CcccccccccccccCCccEEeCCCCccChhhHHHHHh-cCCCCCCcccccCC
Q 021283 230 HDAECAICKENLLVGDKMQELPCKHTFHPPCLKPWLD-EHNSCPICRHELQT 280 (314)
Q Consensus 230 ~~~~C~ICLe~~~~~~~v~~LPCgH~FH~~CI~~WL~-~~~tCPvCR~~l~~ 280 (314)
....|+||++.+ ..++.+||||.||..||..|+. .+.+||+||.++..
T Consensus 331 ~~~~C~ICle~~---~~pv~lpCGH~FC~~Ci~~wl~~~~~~CP~CR~~i~~ 379 (389)
T 2y1n_A 331 TFQLCKICAEND---KDVKIEPCGHLMCTSCLTSWQESEGQGCPFCRCEIKG 379 (389)
T ss_dssp SSSBCTTTSSSB---CCEEEETTCCEECHHHHHHHHHHTCSBCTTTCCBCCE
T ss_pred CCCCCCccCcCC---CCeEEeCCCChhhHHHHHHHHhcCCCCCCCCCCccCC
Confidence 346999999998 4478899999999999999999 68899999998864
No 54
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.92 E-value=5e-10 Score=102.13 Aligned_cols=53 Identities=15% Similarity=0.088 Sum_probs=44.2
Q ss_pred CcccccccccccccCCccEEeCCCCccChhhHHHHHhcC-CCCCCcccccCCCCcch
Q 021283 230 HDAECAICKENLLVGDKMQELPCKHTFHPPCLKPWLDEH-NSCPICRHELQTDDHAY 285 (314)
Q Consensus 230 ~~~~C~ICLe~~~~~~~v~~LPCgH~FH~~CI~~WL~~~-~tCPvCR~~l~~~d~~~ 285 (314)
+...||||++.| ..++.+||||.||..||..|+..+ .+||+||.++...+...
T Consensus 207 ~~~~c~i~~~~~---~dPv~~~~gh~f~~~~i~~~~~~~~~~cP~~~~~~~~~~l~~ 260 (281)
T 2c2l_A 207 DYLCGKISFELM---REPCITPSGITYDRKDIEEHLQRVGHFNPVTRSPLTQEQLIP 260 (281)
T ss_dssp STTBCTTTCSBC---SSEEECSSCCEEETTHHHHHHHHTCSSCTTTCCCCCGGGCEE
T ss_pred cccCCcCcCCHh---cCCeECCCCCEECHHHHHHHHHHCCCCCcCCCCCCchhcCcc
Confidence 467999999999 457889999999999999999864 45999999997654433
No 55
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A
Probab=98.90 E-value=5.1e-10 Score=81.88 Aligned_cols=46 Identities=24% Similarity=0.483 Sum_probs=39.7
Q ss_pred cccccccccccccCCccEEe--CCCCc-cChhhHHHHHhcCCCCCCcccccC
Q 021283 231 DAECAICKENLLVGDKMQEL--PCKHT-FHPPCLKPWLDEHNSCPICRHELQ 279 (314)
Q Consensus 231 ~~~C~ICLe~~~~~~~v~~L--PCgH~-FH~~CI~~WL~~~~tCPvCR~~l~ 279 (314)
+..|+||++... .++.+ ||||. ||..|+..|+..+..||+||.++.
T Consensus 8 ~~~C~IC~~~~~---~~~~~~~pCgH~~~C~~C~~~~~~~~~~CPiCR~~i~ 56 (64)
T 2vje_A 8 IEPCVICQGRPK---NGCIVHGKTGHLMACFTCAKKLKKRNKPCPVCRQPIQ 56 (64)
T ss_dssp GSCCTTTSSSCS---CEEEEETTEEEEEECHHHHHHHHHTTCCCTTTCCCCC
T ss_pred cCCCCcCCCCCC---CEEEECCCCCChhhHHHHHHHHHHcCCcCCCcCcchh
Confidence 568999999873 34555 99999 899999999998899999999884
No 56
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=98.90 E-value=2.9e-10 Score=85.36 Aligned_cols=45 Identities=22% Similarity=0.581 Sum_probs=39.0
Q ss_pred CCcccccccccccccCCccEEeCCCCc-cChhhHHHHHhcCCCCCCcccccCC
Q 021283 229 GHDAECAICKENLLVGDKMQELPCKHT-FHPPCLKPWLDEHNSCPICRHELQT 280 (314)
Q Consensus 229 ~~~~~C~ICLe~~~~~~~v~~LPCgH~-FH~~CI~~WL~~~~tCPvCR~~l~~ 280 (314)
.++..|+||++.+ ..++.+||||. ||..|+..| ..||+||.++..
T Consensus 22 ~~~~~C~iC~~~~---~~~~~~pCgH~~~C~~C~~~~----~~CP~Cr~~i~~ 67 (74)
T 4ic3_A 22 QEEKLCKICMDRN---IAIVFVPCGHLVTCKQCAEAV----DKCPMCYTVITF 67 (74)
T ss_dssp HHHTBCTTTSSSB---CCEEEETTCCBCCCHHHHTTC----SBCTTTCCBCSE
T ss_pred ccCCCCCCCCCCC---CCEEEcCCCChhHHHHhhhcC----ccCCCcCcCccC
Confidence 3467999999997 34788999999 999999999 789999998864
No 57
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.89 E-value=2.9e-10 Score=80.83 Aligned_cols=48 Identities=27% Similarity=0.528 Sum_probs=39.9
Q ss_pred CCcccccccccccccCCccEEeCCCCccChhhHHHHHhcCCCCCCcccccCCCC
Q 021283 229 GHDAECAICKENLLVGDKMQELPCKHTFHPPCLKPWLDEHNSCPICRHELQTDD 282 (314)
Q Consensus 229 ~~~~~C~ICLe~~~~~~~v~~LPCgH~FH~~CI~~WL~~~~tCPvCR~~l~~~d 282 (314)
.+...|+||++.|. .++.+||||.||..||..| ...||+||..+...+
T Consensus 4 ~~~~~C~IC~~~~~---~p~~l~CgH~fC~~Ci~~~---~~~CP~Cr~~~~~~~ 51 (56)
T 1bor_A 4 FQFLRCQQCQAEAK---CPKLLPCLHTLCSGCLEAS---GMQCPICQAPWPLGA 51 (56)
T ss_dssp CCCSSCSSSCSSCB---CCSCSTTSCCSBTTTCSSS---SSSCSSCCSSSSCCS
T ss_pred ccCCCceEeCCccC---CeEEcCCCCcccHHHHccC---CCCCCcCCcEeecCC
Confidence 34678999999985 3577999999999999884 568999999987554
No 58
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.88 E-value=6e-10 Score=87.41 Aligned_cols=59 Identities=24% Similarity=0.492 Sum_probs=45.2
Q ss_pred CcccccccccccccCCccEEeC-CCCccChhhHHHHHhcC------CCCCC--cccc-cCCCCcchhhHHHH
Q 021283 230 HDAECAICKENLLVGDKMQELP-CKHTFHPPCLKPWLDEH------NSCPI--CRHE-LQTDDHAYESWKER 291 (314)
Q Consensus 230 ~~~~C~ICLe~~~~~~~v~~LP-CgH~FH~~CI~~WL~~~------~tCPv--CR~~-l~~~d~~~~~~~~r 291 (314)
....||||++.|. .++.+| |||.|++.||..||..+ .+||+ |+.. +...+.......++
T Consensus 6 ~~~~CPI~~~~~~---dPV~~~~cGh~f~r~cI~~~l~~~~~~~~~~~CP~tgc~~~~l~~~~L~pn~~L~~ 74 (94)
T 2yu4_A 6 SGFTCPITKEEMK---KPVKNKVCGHTYEEDAIVRMIESRQKRKKKAYCPQIGCSHTDIRKSDLIQDEALRR 74 (94)
T ss_dssp SCCBCTTTCSBCS---SEEEESSSCCEEEHHHHHHHHHHHHTTTCCBCCCSTTCCCCCBCGGGEEECHHHHH
T ss_pred cEeECcCcCchhc---CCEEcCCCCCeecHHHHHHHHHHccCcCCCCCCCcCcCcccccCHhhCcCCHHHHH
Confidence 4679999999994 478886 99999999999999864 48999 9877 65555444433333
No 59
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=98.87 E-value=6.9e-10 Score=95.47 Aligned_cols=53 Identities=26% Similarity=0.584 Sum_probs=44.4
Q ss_pred cCCcccccccccccccCCccEEeCCCCccChhhHHHHHhcC-CCCCCcccccCCCCc
Q 021283 228 LGHDAECAICKENLLVGDKMQELPCKHTFHPPCLKPWLDEH-NSCPICRHELQTDDH 283 (314)
Q Consensus 228 ~~~~~~C~ICLe~~~~~~~v~~LPCgH~FH~~CI~~WL~~~-~tCPvCR~~l~~~d~ 283 (314)
+.+...|+||++.|. .++.++|||.||..||..|+... .+||+||.++...+.
T Consensus 15 ~~~~~~C~IC~~~~~---~pv~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~ 68 (170)
T 3hcs_A 15 LESKYECPICLMALR---EAVQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLENQL 68 (170)
T ss_dssp CCGGGBCTTTCSBCS---SEEECTTSCEEEHHHHHHHHHHHCSBCTTTCCBCCGGGC
T ss_pred CCCCCCCCCCChhhc---CcEECCCCCHHHHHHHHHHHHhCCCCCCCCccCcchhhh
Confidence 455789999999984 35778999999999999999864 499999999976543
No 60
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*
Probab=98.83 E-value=1.2e-09 Score=79.69 Aligned_cols=46 Identities=24% Similarity=0.502 Sum_probs=39.1
Q ss_pred cccccccccccccCCccEEe--CCCCc-cChhhHHHHHhcCCCCCCcccccC
Q 021283 231 DAECAICKENLLVGDKMQEL--PCKHT-FHPPCLKPWLDEHNSCPICRHELQ 279 (314)
Q Consensus 231 ~~~C~ICLe~~~~~~~v~~L--PCgH~-FH~~CI~~WL~~~~tCPvCR~~l~ 279 (314)
...|+||++... ..+.+ ||||. ||..|+..|...+..||+||.++.
T Consensus 7 ~~~C~IC~~~~~---~~~~~~~pCgH~~~C~~C~~~~~~~~~~CPiCR~~i~ 55 (63)
T 2vje_B 7 LKPCSLCEKRPR---DGNIIHGRTGHLVTCFHCARRLKKAGASCPICKKEIQ 55 (63)
T ss_dssp GSBCTTTSSSBS---CEEEEETTEEEEEECHHHHHHHHHTTCBCTTTCCBCC
T ss_pred CCCCcccCCcCC---CeEEEecCCCCHhHHHHHHHHHHHhCCcCCCcCchhh
Confidence 568999999863 23445 99998 999999999988889999999884
No 61
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=98.82 E-value=2.9e-09 Score=93.39 Aligned_cols=56 Identities=16% Similarity=0.047 Sum_probs=45.7
Q ss_pred CcccccccccccccCCccEEeCCCCccChhhHHHHHhcC-CCCCCcccccCCCCcchhhH
Q 021283 230 HDAECAICKENLLVGDKMQELPCKHTFHPPCLKPWLDEH-NSCPICRHELQTDDHAYESW 288 (314)
Q Consensus 230 ~~~~C~ICLe~~~~~~~v~~LPCgH~FH~~CI~~WL~~~-~tCPvCR~~l~~~d~~~~~~ 288 (314)
+...||||++.|. .++.+||||.|+..||..|+..+ .+||+||.++...+......
T Consensus 105 ~~f~CPI~~elm~---DPV~~~~Ghtfer~~I~~~l~~~~~tcP~t~~~l~~~~L~pN~~ 161 (179)
T 2f42_A 105 DYLCGKISFELMR---EPCITPSGITYDRKDIEEHLQRVGHFDPVTRSPLTQDQLIPNLA 161 (179)
T ss_dssp GGGBCTTTCSBCS---SEEECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCGGGCEECHH
T ss_pred HhhcccCccccCC---CCeECCCCCEECHHHHHHHHHhCCCCCCCCcCCCChhhCcchHH
Confidence 4679999999994 57888999999999999999864 47999999997665443333
No 62
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.77 E-value=1.7e-09 Score=81.20 Aligned_cols=46 Identities=22% Similarity=0.586 Sum_probs=38.1
Q ss_pred CcccccccccccccCCccEEeCCCCc-cChhhHHHHHhcCCCCCCcccccCCCC
Q 021283 230 HDAECAICKENLLVGDKMQELPCKHT-FHPPCLKPWLDEHNSCPICRHELQTDD 282 (314)
Q Consensus 230 ~~~~C~ICLe~~~~~~~v~~LPCgH~-FH~~CI~~WL~~~~tCPvCR~~l~~~d 282 (314)
++..|+||++.+ ..++.+||||. ||..|+..+ ..||+||.++...-
T Consensus 24 ~~~~C~IC~~~~---~~~~~~pCgH~~~C~~C~~~~----~~CP~Cr~~i~~~~ 70 (75)
T 2ecg_A 24 EEKLCKICMDRN---IAIVFVPCGHLVTCKQCAEAV----DKCPMCYTVITFKQ 70 (75)
T ss_dssp HHHSCSSSCSSC---CCBCCSSSCCCCBCHHHHHHC----SBCTTTCCBCCCCC
T ss_pred CCCCCCcCCCCC---CCEEEecCCCHHHHHHHhhCC----CCCccCCceecCcE
Confidence 456899999997 34777999999 999999653 78999999987643
No 63
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A
Probab=98.65 E-value=4.1e-09 Score=80.25 Aligned_cols=46 Identities=28% Similarity=0.617 Sum_probs=38.6
Q ss_pred CCcccccccccccccCCccEEeCCCCc-cChhhHHHHHhcCCCCCCcccccCCC
Q 021283 229 GHDAECAICKENLLVGDKMQELPCKHT-FHPPCLKPWLDEHNSCPICRHELQTD 281 (314)
Q Consensus 229 ~~~~~C~ICLe~~~~~~~v~~LPCgH~-FH~~CI~~WL~~~~tCPvCR~~l~~~ 281 (314)
.++..|+||++.+ ..++.+||||. ||..|+..| ..||+||.++...
T Consensus 16 ~~~~~C~IC~~~~---~~~v~~pCgH~~~C~~C~~~~----~~CP~Cr~~i~~~ 62 (79)
T 2yho_A 16 KEAMLCMVCCEEE---INSTFCPCGHTVCCESCAAQL----QSCPVCRSRVEHV 62 (79)
T ss_dssp HHHTBCTTTSSSB---CCEEEETTCBCCBCHHHHTTC----SBCTTTCCBCCEE
T ss_pred CCCCEeEEeCccc---CcEEEECCCCHHHHHHHHHhc----CcCCCCCchhhCe
Confidence 3457999999987 45788999999 999999987 3899999988643
No 64
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}
Probab=98.64 E-value=4.8e-09 Score=100.17 Aligned_cols=52 Identities=29% Similarity=0.714 Sum_probs=40.0
Q ss_pred CCcccccccccccccCCc----cE-EeCCCCccChhhHHHHHhcC-----------CCCCCcccccCC
Q 021283 229 GHDAECAICKENLLVGDK----MQ-ELPCKHTFHPPCLKPWLDEH-----------NSCPICRHELQT 280 (314)
Q Consensus 229 ~~~~~C~ICLe~~~~~~~----v~-~LPCgH~FH~~CI~~WL~~~-----------~tCPvCR~~l~~ 280 (314)
....+|+||++.+..+.. +. ..+|+|.||..||.+||+.. ++||+||.+|..
T Consensus 306 e~~~ECaICys~~l~~g~lPdk~C~n~~C~h~FH~~CL~kWLrs~~~sRqSFnvi~G~CPyCr~pIs~ 373 (381)
T 3k1l_B 306 NEELRCNICFAYRLDGGEVPLVSCDNAKCVLKCHAVCLEEWFKTLMDGKTFLEVSFGQCPFCKAKLST 373 (381)
T ss_dssp CSCCSCSSSCCSSCTTCCCCCBCCSCTTCCCCBCSGGGHHHHHHHHSSSCTTTCCEEECTTTCCEEEG
T ss_pred cCCccCcccceeecCCCCCccccccCCccCCccchHHHHHHHHhCCCccccccccCCCCCCCCCcCCc
Confidence 346799999999876222 12 24599999999999999842 479999998853
No 65
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=98.63 E-value=1.3e-08 Score=93.92 Aligned_cols=58 Identities=17% Similarity=0.409 Sum_probs=45.5
Q ss_pred CCcccccccccccccCCccEEeCCCCccChhhHHHHHhcC--CCCCC--cccccCCCCcchhhH
Q 021283 229 GHDAECAICKENLLVGDKMQELPCKHTFHPPCLKPWLDEH--NSCPI--CRHELQTDDHAYESW 288 (314)
Q Consensus 229 ~~~~~C~ICLe~~~~~~~v~~LPCgH~FH~~CI~~WL~~~--~tCPv--CR~~l~~~d~~~~~~ 288 (314)
.....||||++.|. ++|+...|||.||+.||..|+..+ .+||+ ||..+...+...+..
T Consensus 179 ~~el~CPIcl~~f~--DPVts~~CGHsFcR~cI~~~~~~~~~~~CPvtGCr~~l~~~dL~pN~~ 240 (267)
T 3htk_C 179 KIELTCPITCKPYE--APLISRKCNHVFDRDGIQNYLQGYTTRDCPQAACSQVVSMRDFVRDPI 240 (267)
T ss_dssp BCCSBCTTTSSBCS--SEEEESSSCCEEEHHHHHHHSTTCSCEECSGGGCSCEECGGGEEECHH
T ss_pred ceeeECcCccCccc--CCeeeCCCCCcccHHHHHHHHHhCCCCCCCcccccCcCchhhCCcCHH
Confidence 34679999999994 444445899999999999999864 47999 999887766554433
No 66
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.56 E-value=3e-08 Score=73.33 Aligned_cols=44 Identities=32% Similarity=0.838 Sum_probs=37.5
Q ss_pred CcccccccccccccCCccEEeCCCCc-cChhhHHHHHhcCCCCCCcccccCC
Q 021283 230 HDAECAICKENLLVGDKMQELPCKHT-FHPPCLKPWLDEHNSCPICRHELQT 280 (314)
Q Consensus 230 ~~~~C~ICLe~~~~~~~v~~LPCgH~-FH~~CI~~WL~~~~tCPvCR~~l~~ 280 (314)
+...|+||++.. ..++.+||+|. ||..|+.. ...||+||.+|..
T Consensus 14 ~~~~C~IC~~~~---~~~v~~pCgH~~~C~~C~~~----~~~CP~CR~~i~~ 58 (68)
T 2ea5_A 14 NSKDCVVCQNGT---VNWVLLPCRHTCLCDGCVKY----FQQCPMCRQFVQE 58 (68)
T ss_dssp CSSCCSSSSSSC---CCCEETTTTBCCSCTTHHHH----CSSCTTTCCCCCC
T ss_pred CCCCCCCcCcCC---CCEEEECCCChhhhHHHHhc----CCCCCCCCcchhc
Confidence 467899999986 45888999999 99999984 4789999998864
No 67
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.51 E-value=3.3e-08 Score=77.04 Aligned_cols=48 Identities=25% Similarity=0.581 Sum_probs=37.3
Q ss_pred CcccccccccccccCCccEEeCCCCccChhhHHHHHhc--------CCCCCC--cccc
Q 021283 230 HDAECAICKENLLVGDKMQELPCKHTFHPPCLKPWLDE--------HNSCPI--CRHE 277 (314)
Q Consensus 230 ~~~~C~ICLe~~~~~~~v~~LPCgH~FH~~CI~~WL~~--------~~tCPv--CR~~ 277 (314)
+..+|+||++.+.........+|+|.||..||..++.. ...||. |+..
T Consensus 4 ~~~~C~IC~~~~~~~~~~~l~~CgH~FC~~Cl~~~~~~~i~~g~~~~i~CP~~~C~~~ 61 (94)
T 1wim_A 4 GSSGCKLCLGEYPVEQMTTIAQCQCIFCTLCLKQYVELLIKEGLETAISCPDAACPKQ 61 (94)
T ss_dssp SBCCCSSSCCCCBGGGEEEETTTTEEEEHHHHHHHHHHHHHHCSCCCEECSCTTCSSC
T ss_pred CCcCCcccCcccccccceEcCCCCCcccHHHHHHHHHHHhhcCCcccccCccccCCCC
Confidence 35789999999864333333479999999999999873 237999 9988
No 68
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B
Probab=98.50 E-value=2.3e-08 Score=95.93 Aligned_cols=48 Identities=25% Similarity=0.681 Sum_probs=40.7
Q ss_pred hhcCCcccccccccccccCCccEEeCCCCc-cChhhHHHHHhcCCCCCCcccccCC
Q 021283 226 DKLGHDAECAICKENLLVGDKMQELPCKHT-FHPPCLKPWLDEHNSCPICRHELQT 280 (314)
Q Consensus 226 ~~~~~~~~C~ICLe~~~~~~~v~~LPCgH~-FH~~CI~~WL~~~~tCPvCR~~l~~ 280 (314)
..+.++..|+||++.+ ..++.+||||. ||..|+..| ..||+||.++..
T Consensus 290 ~~l~~~~~C~IC~~~~---~~~v~lpCgH~~fC~~C~~~~----~~CP~CR~~i~~ 338 (345)
T 3t6p_A 290 RRLQEERTCKVCMDKE---VSVVFIPCGHLVVCQECAPSL----RKCPICRGIIKG 338 (345)
T ss_dssp HHHHTTCBCTTTSSSB---CCEEEETTCCEEECTTTGGGC----SBCTTTCCBCCE
T ss_pred HhCcCCCCCCccCCcC---CceEEcCCCChhHhHHHHhcC----CcCCCCCCCccC
Confidence 3445678999999998 35788999999 999999998 689999998854
No 69
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A
Probab=98.50 E-value=2.9e-08 Score=72.10 Aligned_cols=49 Identities=16% Similarity=0.283 Sum_probs=42.1
Q ss_pred cccccccccccccCCccEEe-CCCCccChhhHHHHHhcCCCCCCcccccCCCC
Q 021283 231 DAECAICKENLLVGDKMQEL-PCKHTFHPPCLKPWLDEHNSCPICRHELQTDD 282 (314)
Q Consensus 231 ~~~C~ICLe~~~~~~~v~~L-PCgH~FH~~CI~~WL~~~~tCPvCR~~l~~~d 282 (314)
...|+||++.+. .++.+ +|||.|.+.||.+||..+.+||+++.++...+
T Consensus 3 ~~~CpIs~~~m~---dPV~~~~sG~~yer~~I~~~l~~~~~cP~t~~~L~~~~ 52 (61)
T 2bay_A 3 HMLCAISGKVPR---RPVLSPKSRTIFEKSLLEQYVKDTGNDPITNEPLSIEE 52 (61)
T ss_dssp -CCCTTTCSCCS---SEEEETTTTEEEEHHHHHHHHHHHSBCTTTCCBCCGGG
T ss_pred eEEecCCCCCCC---CCEEeCCCCcEEcHHHHHHHHHhCCCCcCCcCCCChhh
Confidence 468999999994 46777 89999999999999998889999999986544
No 70
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Probab=98.49 E-value=7.9e-08 Score=69.60 Aligned_cols=48 Identities=33% Similarity=0.753 Sum_probs=37.8
Q ss_pred CcccccccccccccCCccEEeCCC--C---ccChhhHHHHHhc--CCCCCCcccccCC
Q 021283 230 HDAECAICKENLLVGDKMQELPCK--H---TFHPPCLKPWLDE--HNSCPICRHELQT 280 (314)
Q Consensus 230 ~~~~C~ICLe~~~~~~~v~~LPCg--H---~FH~~CI~~WL~~--~~tCPvCR~~l~~ 280 (314)
+...|.||++.. ++. ..+||. | .||..|+.+|+.. +.+||+||+++..
T Consensus 5 ~~~~CrIC~~~~--~~~-l~~PC~C~gs~~~~H~~Cl~~W~~~~~~~~C~~C~~~~~~ 59 (60)
T 1vyx_A 5 DVPVCWICNEEL--GNE-RFRACGCTGELENVHRSCLSTWLTISRNTACQICGVVYNT 59 (60)
T ss_dssp SCCEETTTTEEC--SCC-CCCSCCCSSGGGSCCHHHHHHHHHHHTCSBCTTTCCBCCC
T ss_pred CCCEeEEeecCC--CCc-eecCcCCCCchhhhHHHHHHHHHHhCCCCccCCCCCeeec
Confidence 456899999984 233 368965 4 8999999999974 5789999998754
No 71
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}
Probab=97.99 E-value=3.3e-06 Score=66.97 Aligned_cols=46 Identities=26% Similarity=0.497 Sum_probs=38.9
Q ss_pred cccccccccccCCccEEeCCCCccChhhHHHHHh-cCCCCCCcccccCC
Q 021283 233 ECAICKENLLVGDKMQELPCKHTFHPPCLKPWLD-EHNSCPICRHELQT 280 (314)
Q Consensus 233 ~C~ICLe~~~~~~~v~~LPCgH~FH~~CI~~WL~-~~~tCPvCR~~l~~ 280 (314)
.|++|--.+. ...+.+||+|+||.+|+..|.+ ...+||.|+.+|..
T Consensus 3 fC~~C~~Pi~--iygRmIPCkHvFCydCa~~~~~~~~k~Cp~C~~~V~r 49 (101)
T 3vk6_A 3 FCDKCGLPIK--VYGRMIPCKHVFCYDCAILHEKKGDKMCPGCSDPVQR 49 (101)
T ss_dssp BCTTTCSBCS--EEEEEETTCCEEEHHHHHHHHHTTCCBCTTTCCBCSE
T ss_pred ecCccCCCeE--EEeeeccccccHHHHHHHHHHhccCCCCcCcCCeeee
Confidence 5888888774 4678899999999999999985 56899999998864
No 72
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=97.79 E-value=1e-05 Score=73.74 Aligned_cols=52 Identities=23% Similarity=0.593 Sum_probs=41.6
Q ss_pred CcccccccccccccCCccEEeC-CCCccChhhHHHHHhcCC--CCCCcccccCCCCcc
Q 021283 230 HDAECAICKENLLVGDKMQELP-CKHTFHPPCLKPWLDEHN--SCPICRHELQTDDHA 284 (314)
Q Consensus 230 ~~~~C~ICLe~~~~~~~v~~LP-CgH~FH~~CI~~WL~~~~--tCPvCR~~l~~~d~~ 284 (314)
....|.||.+.+..+. ..+ |+|.||..|+..|++.+. .||.|+.+.+...+.
T Consensus 179 ~i~~C~iC~~iv~~g~---~C~~C~~~~H~~C~~~~~~~~~~~~CP~C~~~W~~~~~~ 233 (238)
T 3nw0_A 179 AVKICNICHSLLIQGQ---SCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWPHEIPK 233 (238)
T ss_dssp TCCBCTTTCSBCSSCE---ECSSSCCEECHHHHHHHTTTCSSCBCTTTCCBCCSCCCC
T ss_pred CCCcCcchhhHHhCCc---ccCccChHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCC
Confidence 3678999999987543 333 999999999999998654 899999988765543
No 73
>2ko5_A Ring finger protein Z; lassa fever virus-Z, negative regulator of EIF4E, cytoplasm, HOST-virus interaction, lipoprotein, membrane; NMR {Lassa virus josiah}
Probab=94.55 E-value=0.011 Score=46.31 Aligned_cols=47 Identities=30% Similarity=0.553 Sum_probs=37.8
Q ss_pred CcccccccccccccCCccEEeCC-CCccChhhHHHHHhcCCCCCCcccccCCC
Q 021283 230 HDAECAICKENLLVGDKMQELPC-KHTFHPPCLKPWLDEHNSCPICRHELQTD 281 (314)
Q Consensus 230 ~~~~C~ICLe~~~~~~~v~~LPC-gH~FH~~CI~~WL~~~~tCPvCR~~l~~~ 281 (314)
.-..|-.|--.. . ....| .|.+|..|+.-.|+.+..||+|..+|++.
T Consensus 27 G~~nCKsCWf~~---k--~LV~C~dHYLCl~CLtlmL~~SdrCpIC~~pLPtk 74 (99)
T 2ko5_A 27 GPQFCKSCWFEN---K--GLVECNNHYLCLNCLTLLLSVSNRCPICKMPLPTK 74 (99)
T ss_dssp CCCCCCSSCSCC---S--SEEECSSCEEEHHHHHHTCSSSSEETTTTEECCCC
T ss_pred CcccChhhcccc---C--CeeeecchhhHHHHHHHHHhhccCCcccCCcCCcc
Confidence 356899997664 2 23456 59999999999999999999999999754
No 74
>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}
Probab=93.97 E-value=0.022 Score=43.99 Aligned_cols=35 Identities=17% Similarity=0.451 Sum_probs=25.8
Q ss_pred cccccccccccccCCccEEeCCCCccChhhHHH-HH
Q 021283 231 DAECAICKENLLVGDKMQELPCKHTFHPPCLKP-WL 265 (314)
Q Consensus 231 ~~~C~ICLe~~~~~~~v~~LPCgH~FH~~CI~~-WL 265 (314)
+..|+||.+.+...-...-++|+|.||..|+.. |.
T Consensus 3 e~~C~~C~~~~~~~av~~C~~C~~~~C~~Cl~~~h~ 38 (101)
T 2jun_A 3 KVLCQFCDQDPAQDAVKTCVTCEVSYCDECLKATHP 38 (101)
T ss_dssp CCBCTTCCSSSCCBCCEEETTTTEEECHHHHHHHSC
T ss_pred CCCCcCCCCCCCCCceEECCcCChHHhHHHCHHHhc
Confidence 568999998643322233388999999999998 53
No 75
>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens}
Probab=92.89 E-value=0.08 Score=38.55 Aligned_cols=45 Identities=24% Similarity=0.592 Sum_probs=33.0
Q ss_pred CcccccccccccccCCccEEeC-CCCccChhhHHHHHhcCC----CCCCccccc
Q 021283 230 HDAECAICKENLLVGDKMQELP-CKHTFHPPCLKPWLDEHN----SCPICRHEL 278 (314)
Q Consensus 230 ~~~~C~ICLe~~~~~~~v~~LP-CgH~FH~~CI~~WL~~~~----tCPvCR~~l 278 (314)
....|.||.+. ++ ++.-- |...||..|+.+.|.... .||.|....
T Consensus 11 ~~~~C~vC~~~---~~-ll~Cd~C~~~~H~~Cl~P~l~~~P~g~W~C~~C~~~~ 60 (66)
T 2lri_C 11 PGARCGVCGDG---TD-VLRCTHCAAAFHWRCHFPAGTSRPGTGLRCRSCSGDV 60 (66)
T ss_dssp TTCCCTTTSCC---TT-CEECSSSCCEECHHHHCTTTCCCCSSSCCCTTTTTCC
T ss_pred CCCCcCCCCCC---Ce-EEECCCCCCceecccCCCccCcCCCCCEECccccCCC
Confidence 35689999753 33 33333 999999999998887543 799997654
No 76
>3m62_A Ubiquitin conjugation factor E4; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} PDB: 3m63_A* 2qiz_A 2qj0_A
Probab=92.88 E-value=0.12 Score=55.29 Aligned_cols=52 Identities=15% Similarity=0.156 Sum_probs=44.8
Q ss_pred CCcccccccccccccCCccEEeCCC-CccChhhHHHHHhcCCCCCCcccccCCCCc
Q 021283 229 GHDAECAICKENLLVGDKMQELPCK-HTFHPPCLKPWLDEHNSCPICRHELQTDDH 283 (314)
Q Consensus 229 ~~~~~C~ICLe~~~~~~~v~~LPCg-H~FH~~CI~~WL~~~~tCPvCR~~l~~~d~ 283 (314)
.+...|||-++-+ ..++.+|.| +.|-+.+|..||..+.+||+-|.++...+.
T Consensus 889 P~~F~cPIs~~lM---~DPVilpsG~~TydR~~I~~wl~~~~tdP~Tr~~L~~~~l 941 (968)
T 3m62_A 889 PDEFLDPLMYTIM---KDPVILPASKMNIDRSTIKAHLLSDSTDPFNRMPLKLEDV 941 (968)
T ss_dssp CGGGBCTTTCSBC---SSEEECTTTCCEEEHHHHHHHHTTCCBCTTTCCBCCGGGC
T ss_pred cHHhCCcchhhHH---hCCeEcCCCCEEECHHHHHHHHhcCCCCCCCCCCCCcccc
Confidence 4567899999998 458899987 689999999999999999999999976543
No 77
>2xb1_A Pygopus homolog 2, B-cell CLL/lymphoma 9-like Pro; fusion protein, signal transduction, transcription, metal BI WNT proteins; 1.90A {Homo sapiens}
Probab=91.61 E-value=0.0098 Score=47.32 Aligned_cols=80 Identities=18% Similarity=0.215 Sum_probs=44.0
Q ss_pred cccccccccccccCCccEEe--CCCCccChhhHHHH------H----hcCCCCCCcccccCCCCcchhhHHHHHHHHHHH
Q 021283 231 DAECAICKENLLVGDKMQEL--PCKHTFHPPCLKPW------L----DEHNSCPICRHELQTDDHAYESWKEREKEAQEE 298 (314)
Q Consensus 231 ~~~C~ICLe~~~~~~~v~~L--PCgH~FH~~CI~~W------L----~~~~tCPvCR~~l~~~d~~~~~~~~r~~~~~~e 298 (314)
...|+||...+......+.. .|...||..|+.-- + ...-.||.|+........... .+.-..-...-
T Consensus 3 ~~~C~iC~~p~~~~~~mi~Cdd~C~~WfH~~CVglt~~~~~~i~~~~~~~~~Cp~C~~~~~~~~~~~~-sk~~yvfst~l 81 (105)
T 2xb1_A 3 VYPCGACRSEVNDDQDAILCEASCQKWFHRECTGMTESAYGLLTTEASAVWACDLCLKTKEGSGSGSG-SQFVYVFTTHL 81 (105)
T ss_dssp CCBCTTTCSBCCTTSCEEECTTTTCCEEEGGGTTCCHHHHHHHHHCTTEEECCHHHHHTTTTC---------CEEECHHH
T ss_pred cCCCCCCCCccCCCCCEEEecCCcccccccccCCcCHHHHHhhccCCCCCEECccccCcCCCCCCCCC-cccceEeccch
Confidence 56899999998655444444 48899999997321 1 033479999875432221111 11111112233
Q ss_pred HhhhccccCCCcc
Q 021283 299 RKGAANAVRGGEY 311 (314)
Q Consensus 299 ~~~~~~~~~~~~~ 311 (314)
+..|+.|+.+|+|
T Consensus 82 an~aAea~~~g~~ 94 (105)
T 2xb1_A 82 ANTAAEAVLQGRA 94 (105)
T ss_dssp HHHHHHHHHTTSS
T ss_pred hhhHHHHHhcchH
Confidence 4445557777765
No 78
>3lqh_A Histone-lysine N-methyltransferase MLL; PHD finger, bromodomain, leukemia, apoptosis, chromati regulator, DNA-binding, isopeptide bond; 1.72A {Homo sapiens} PDB: 3lqi_A* 3lqj_A* 2kyu_A
Probab=85.81 E-value=0.31 Score=42.36 Aligned_cols=47 Identities=21% Similarity=0.419 Sum_probs=33.7
Q ss_pred ccccccccccccCCc---cEEeC-CCCccChhhHHH------HHh-----cCCCCCCccccc
Q 021283 232 AECAICKENLLVGDK---MQELP-CKHTFHPPCLKP------WLD-----EHNSCPICRHEL 278 (314)
Q Consensus 232 ~~C~ICLe~~~~~~~---v~~LP-CgH~FH~~CI~~------WL~-----~~~tCPvCR~~l 278 (314)
..|+||...+..++. .+..- |...||..|+.- -+. ..-.||.|+..-
T Consensus 3 ~~CpiC~k~Y~~~~~~~~MIqCd~C~~W~H~~Cvgi~~~~~e~~~~~pe~~~y~Cp~C~~~~ 64 (183)
T 3lqh_A 3 NFCPLCDKCYDDDDYESKMMQCGKCDRWVHSKCENLSDEMYEILSNLPESVAYTCVNCTERH 64 (183)
T ss_dssp CBCTTTCCBCTTCCTTCCEEECTTTCCEEEGGGSSCCHHHHHHHHHSHHHHCCCCTTTCCSS
T ss_pred CcCCCCcCccCCcccCCCeEECCCCCcccchhccccCHHHHHHhhcCCCCCeeECcCCCCCC
Confidence 469999999977652 45544 999999999732 121 156899998754
No 79
>1we9_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=85.25 E-value=0.15 Score=36.38 Aligned_cols=48 Identities=23% Similarity=0.539 Sum_probs=33.2
Q ss_pred CcccccccccccccCCccEEeC-CCCccChhhHHHHHh-----cCCCCCCcccc
Q 021283 230 HDAECAICKENLLVGDKMQELP-CKHTFHPPCLKPWLD-----EHNSCPICRHE 277 (314)
Q Consensus 230 ~~~~C~ICLe~~~~~~~v~~LP-CgH~FH~~CI~~WL~-----~~~tCPvCR~~ 277 (314)
+...|+||...+..+...+.-- |...||..|+.--.. ..-.||.|+..
T Consensus 5 e~~~C~~C~~~~~~~~~mI~Cd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~k 58 (64)
T 1we9_A 5 SSGQCGACGESYAADEFWICCDLCEMWFHGKCVKITPARAEHIKQYKCPSCSNK 58 (64)
T ss_dssp SCCCCSSSCCCCCSSSCEEECSSSCCEEETTTTTCCTTGGGGCSSCCCHHHHTT
T ss_pred CCCCCCCCCCccCCCCCEEEccCCCCCCCccccCcChhHhcCCCcEECCCCcCc
Confidence 4568999998875444444443 999999999854321 34579999753
No 80
>2lv9_A Histone-lysine N-methyltransferase MLL5; zinc finger, transcription, protein binding, NESG, northeast structural genomics consortium, SGC; NMR {Homo sapiens}
Probab=83.75 E-value=0.3 Score=38.04 Aligned_cols=44 Identities=23% Similarity=0.306 Sum_probs=28.9
Q ss_pred cccccccccccccCCccEEeC-CCCccChhhHHHHHhc---CCCCCCccc
Q 021283 231 DAECAICKENLLVGDKMQELP-CKHTFHPPCLKPWLDE---HNSCPICRH 276 (314)
Q Consensus 231 ~~~C~ICLe~~~~~~~v~~LP-CgH~FH~~CI~~WL~~---~~tCPvCR~ 276 (314)
...| ||-.....+. ++..- |...||..|+..-+.. .-.||.|+.
T Consensus 28 ~vrC-iC~~~~~~~~-mi~Cd~C~~w~H~~C~~~~~~~~p~~w~C~~C~~ 75 (98)
T 2lv9_A 28 VTRC-ICGFTHDDGY-MICCDKCSVWQHIDCMGIDRQHIPDTYLCERCQP 75 (98)
T ss_dssp BCCC-TTSCCSCSSC-EEEBTTTCBEEETTTTTCCTTSCCSSBCCTTTSS
T ss_pred CEEe-ECCCccCCCc-EEEcCCCCCcCcCcCCCCCccCCCCCEECCCCcC
Confidence 3467 8877654333 33333 9999999998764332 237999974
No 81
>1f62_A Transcription factor WSTF; Zn-finger; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=83.28 E-value=0.46 Score=32.16 Aligned_cols=43 Identities=35% Similarity=0.751 Sum_probs=28.5
Q ss_pred cccccccccccCCccEEe-CCCCccChhhHHHHHhcC----CCCCCccc
Q 021283 233 ECAICKENLLVGDKMQEL-PCKHTFHPPCLKPWLDEH----NSCPICRH 276 (314)
Q Consensus 233 ~C~ICLe~~~~~~~v~~L-PCgH~FH~~CI~~WL~~~----~tCPvCR~ 276 (314)
.|.||...-.. +.++.- .|...||..|+.+=|... -.||.|+.
T Consensus 2 ~C~vC~~~~~~-~~ll~Cd~C~~~~H~~Cl~p~l~~~P~g~W~C~~C~~ 49 (51)
T 1f62_A 2 RCKVCRKKGED-DKLILCDECNKAFHLFCLRPALYEVPDGEWQCPACQP 49 (51)
T ss_dssp CCTTTCCSSCC-SCCEECTTTCCEECHHHHCTTCCSCCSSCCSCTTTSC
T ss_pred CCCCCCCCCCC-CCEEECCCCChhhCcccCCCCcCCCCCCcEECcCccc
Confidence 58899875322 233333 399999999997655432 26999964
No 82
>3u5n_A E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, bromodomain, TGF-beta, epigenetics, methylation, K9ME3, K14AC, transcription; HET: M3L ALY; 1.95A {Homo sapiens} PDB: 3u5m_A* 3u5o_A* 3u5p_A*
Probab=82.55 E-value=0.3 Score=42.81 Aligned_cols=45 Identities=31% Similarity=0.661 Sum_probs=32.0
Q ss_pred CcccccccccccccCCccEEeC-CCCccChhhHHHHHhcC----CCCCCccccc
Q 021283 230 HDAECAICKENLLVGDKMQELP-CKHTFHPPCLKPWLDEH----NSCPICRHEL 278 (314)
Q Consensus 230 ~~~~C~ICLe~~~~~~~v~~LP-CgH~FH~~CI~~WL~~~----~tCPvCR~~l 278 (314)
.+..|.||... ++ +.... |...||..|+.+-|... -.||.|+..-
T Consensus 6 ~~~~C~~C~~~---g~-ll~Cd~C~~~~H~~Cl~p~l~~~p~~~W~C~~C~~~~ 55 (207)
T 3u5n_A 6 NEDWCAVCQNG---GD-LLCCEKCPKVFHLTCHVPTLLSFPSGDWICTFCRDIG 55 (207)
T ss_dssp SCSSBTTTCCC---EE-EEECSSSSCEECTTTSSSCCSSCCSSCCCCTTTSCSS
T ss_pred CCCCCCCCCCC---Cc-eEEcCCCCCccCCccCCCCCCCCCCCCEEeCceeCcc
Confidence 45679999854 23 33333 88999999998876643 2799998754
No 83
>2l5u_A Chromodomain-helicase-DNA-binding protein 4; CHD4, MI2B, MI2-beta, PHD, protein binding, peptide binding metal binding protein; NMR {Homo sapiens}
Probab=81.31 E-value=0.56 Score=33.23 Aligned_cols=44 Identities=32% Similarity=0.853 Sum_probs=30.9
Q ss_pred CcccccccccccccCCccEEe-CCCCccChhhHHHHHhcC----CCCCCcccc
Q 021283 230 HDAECAICKENLLVGDKMQEL-PCKHTFHPPCLKPWLDEH----NSCPICRHE 277 (314)
Q Consensus 230 ~~~~C~ICLe~~~~~~~v~~L-PCgH~FH~~CI~~WL~~~----~tCPvCR~~ 277 (314)
.+..|.||... + .++.- .|...||..|+.+-+... -.||.|+..
T Consensus 10 ~~~~C~vC~~~---g-~ll~CD~C~~~fH~~Cl~p~l~~~p~g~W~C~~C~~~ 58 (61)
T 2l5u_A 10 HQDYCEVCQQG---G-EIILCDTCPRAYHMVCLDPDMEKAPEGKWSCPHCEKE 58 (61)
T ss_dssp CCSSCTTTSCC---S-SEEECSSSSCEEEHHHHCTTCCSCCCSSCCCTTGGGG
T ss_pred CCCCCccCCCC---C-cEEECCCCChhhhhhccCCCCCCCCCCceECcccccc
Confidence 46789999873 2 33333 388999999999865432 279999753
No 84
>1mm2_A MI2-beta; PHD, zinc finger, protein scaffold, DNA binding protein; NMR {Homo sapiens} SCOP: g.50.1.2 PDB: 2l75_A* 1mm3_A
Probab=80.98 E-value=0.44 Score=33.78 Aligned_cols=47 Identities=32% Similarity=0.656 Sum_probs=31.7
Q ss_pred CcccccccccccccCCccEEeCCCCccChhhHHHHHhcC----CCCCCcccccC
Q 021283 230 HDAECAICKENLLVGDKMQELPCKHTFHPPCLKPWLDEH----NSCPICRHELQ 279 (314)
Q Consensus 230 ~~~~C~ICLe~~~~~~~v~~LPCgH~FH~~CI~~WL~~~----~tCPvCR~~l~ 279 (314)
.+..|.||... ++.+.--.|...||..|+.+-|... -.||.|+....
T Consensus 8 ~~~~C~vC~~~---g~ll~Cd~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~~~~ 58 (61)
T 1mm2_A 8 HMEFCRVCKDG---GELLCCDTCPSSYHIHCLNPPLPEIPNGEWLCPRCTCPAL 58 (61)
T ss_dssp SCSSCTTTCCC---SSCBCCSSSCCCBCSSSSSSCCSSCCSSCCCCTTTTTTCC
T ss_pred CCCcCCCCCCC---CCEEEcCCCCHHHcccccCCCcCcCCCCccCChhhcCchh
Confidence 46689999863 2322223388999999998755532 26999986543
No 85
>1wil_A KIAA1045 protein; ring finger domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: g.50.1.3
Probab=80.80 E-value=0.98 Score=34.53 Aligned_cols=31 Identities=29% Similarity=0.752 Sum_probs=21.6
Q ss_pred CcccccccccccccCCccEEeC---CCCccChhhHHHH
Q 021283 230 HDAECAICKENLLVGDKMQELP---CKHTFHPPCLKPW 264 (314)
Q Consensus 230 ~~~~C~ICLe~~~~~~~v~~LP---CgH~FH~~CI~~W 264 (314)
.|..|.||--- ...+ .+| |+-+||..|+.+-
T Consensus 14 ~D~~C~VC~~~-t~~~---l~pCRvC~RvfH~~CL~r~ 47 (89)
T 1wil_A 14 NDEMCDVCEVW-TAES---LFPCRVCTRVFHDGCLRRM 47 (89)
T ss_dssp CSCCCTTTCCC-CSSC---CSSCSSSSSCCCHHHHHHH
T ss_pred CCcccCccccc-cccc---eeccccccccccHhhcccc
Confidence 46799998632 1112 244 7899999999985
No 86
>3o36_A Transcription intermediary factor 1-alpha; TRIM24, PHD finger, bromodomain, H4K16 acetylation, breast C transcription-protein binding complex; HET: ALY; 1.70A {Homo sapiens} PDB: 3o33_A* 3o34_A* 3o35_A* 3o37_A
Probab=79.96 E-value=0.53 Score=40.34 Aligned_cols=45 Identities=29% Similarity=0.702 Sum_probs=32.1
Q ss_pred cccccccccccccCCccEEeC-CCCccChhhHHHHHhcC----CCCCCcccccC
Q 021283 231 DAECAICKENLLVGDKMQELP-CKHTFHPPCLKPWLDEH----NSCPICRHELQ 279 (314)
Q Consensus 231 ~~~C~ICLe~~~~~~~v~~LP-CgH~FH~~CI~~WL~~~----~tCPvCR~~l~ 279 (314)
+..|.||... ++ +.... |...||..|+.+-|... -.||.|+..-.
T Consensus 4 ~~~C~~C~~~---g~-ll~Cd~C~~~~H~~C~~p~l~~~p~~~W~C~~C~~~~~ 53 (184)
T 3o36_A 4 EDWCAVCQNG---GE-LLCCEKCPKVFHLSCHVPTLTNFPSGEWICTFCRDLSK 53 (184)
T ss_dssp CSSCTTTCCC---SS-CEECSSSSCEECTTTSSSCCSSCCSSCCCCTTTSCSSS
T ss_pred CCccccCCCC---Ce-eeecCCCCcccCccccCCCCCCCCCCCEECccccCccc
Confidence 5679999854 34 33333 88999999998876642 26999987543
No 87
>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A*
Probab=78.67 E-value=0.48 Score=34.72 Aligned_cols=49 Identities=22% Similarity=0.460 Sum_probs=33.3
Q ss_pred CcccccccccccccCCccEEeC-CCCccChhhHHHHHhc----CCCCCCcccccC
Q 021283 230 HDAECAICKENLLVGDKMQELP-CKHTFHPPCLKPWLDE----HNSCPICRHELQ 279 (314)
Q Consensus 230 ~~~~C~ICLe~~~~~~~v~~LP-CgH~FH~~CI~~WL~~----~~tCPvCR~~l~ 279 (314)
+...|.||..... ++.++..- |...||..|+..-+.. .-.||.|+..+.
T Consensus 17 ~~~~C~~C~~~~~-~~~mi~CD~C~~wfH~~Cv~~~~~~~~~~~w~C~~C~~~~~ 70 (75)
T 2k16_A 17 QIWICPGCNKPDD-GSPMIGCDDCDDWYHWPCVGIMAAPPEEMQWFCPKCANKIK 70 (75)
T ss_dssp EEECBTTTTBCCS-SCCEEECSSSSSEEEHHHHTCSSCCCSSSCCCCTTTHHHHC
T ss_pred CCcCCCCCCCCCC-CCCEEEcCCCCcccccccCCCCccCCCCCCEEChhccCchh
Confidence 3457999987752 33344433 8999999999765432 337999987654
No 88
>1fp0_A KAP-1 corepressor; PHD domain, C3HC4 type zinc binding domain, -structure, transcription; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=77.99 E-value=0.99 Score=34.68 Aligned_cols=45 Identities=29% Similarity=0.690 Sum_probs=32.1
Q ss_pred CcccccccccccccCCccEEeC-CCCccChhhHHHHHhcCC----CCCCccccc
Q 021283 230 HDAECAICKENLLVGDKMQELP-CKHTFHPPCLKPWLDEHN----SCPICRHEL 278 (314)
Q Consensus 230 ~~~~C~ICLe~~~~~~~v~~LP-CgH~FH~~CI~~WL~~~~----tCPvCR~~l 278 (314)
.+..|.||... ++ +.... |.-.||..|+.+=|...+ .||.|+..-
T Consensus 24 n~~~C~vC~~~---g~-LL~CD~C~~~fH~~Cl~PpL~~~P~g~W~C~~C~~~~ 73 (88)
T 1fp0_A 24 SATICRVCQKP---GD-LVMCNQCEFCFHLDCHLPALQDVPGEEWSCSLCHVLP 73 (88)
T ss_dssp SSSCCSSSCSS---SC-CEECTTSSCEECTTSSSTTCCCCCSSSCCCCSCCCCC
T ss_pred CCCcCcCcCCC---CC-EEECCCCCCceecccCCCCCCCCcCCCcCCccccCCC
Confidence 46789999965 33 33333 889999999987665422 699998643
No 89
>2cs3_A Protein C14ORF4, MY039 protein; ZF-C3HC4 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.3
Probab=77.53 E-value=1.4 Score=33.45 Aligned_cols=36 Identities=28% Similarity=0.539 Sum_probs=29.3
Q ss_pred cccccccccccccCCccEEeC--CCCccChhhHHHHHhc
Q 021283 231 DAECAICKENLLVGDKMQELP--CKHTFHPPCLKPWLDE 267 (314)
Q Consensus 231 ~~~C~ICLe~~~~~~~v~~LP--CgH~FH~~CI~~WL~~ 267 (314)
...|.+|.+.++. ..-+..| =+|.||..|-+..++.
T Consensus 15 ~l~CtlC~erLEd-tHFVQCPsv~~HkFCFpCsr~sIk~ 52 (93)
T 2cs3_A 15 PLCCTICHERLED-THFVQCPSVPSHKFCFPCSRESIKA 52 (93)
T ss_dssp SCCCSSSCSCCSS-TTSEECSSCSSCEECHHHHHHHHHH
T ss_pred eeEeecchhhhcc-CceeeCCCccCCeeeccccHHHHHh
Confidence 5689999999954 5566666 4799999999999884
No 90
>2puy_A PHD finger protein 21A; PHD finger, histone CODE, BRAF-HDAC complex, transcription; 1.43A {Homo sapiens}
Probab=75.57 E-value=0.23 Score=35.00 Aligned_cols=45 Identities=29% Similarity=0.850 Sum_probs=31.1
Q ss_pred CcccccccccccccCCccEEe-CCCCccChhhHHHHHhcCC----CCCCccccc
Q 021283 230 HDAECAICKENLLVGDKMQEL-PCKHTFHPPCLKPWLDEHN----SCPICRHEL 278 (314)
Q Consensus 230 ~~~~C~ICLe~~~~~~~v~~L-PCgH~FH~~CI~~WL~~~~----tCPvCR~~l 278 (314)
.+..|.||... ++ ++.- .|...||..|+.+-|...+ .||.|....
T Consensus 4 ~~~~C~vC~~~---g~-ll~Cd~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~~~ 53 (60)
T 2puy_A 4 HEDFCSVCRKS---GQ-LLMCDTCSRVYHLDCLDPPLKTIPKGMWICPRCQDQM 53 (60)
T ss_dssp CCSSCTTTCCC---SS-CEECSSSSCEECGGGSSSCCSSCCCSCCCCHHHHHHH
T ss_pred CCCCCcCCCCC---Cc-EEEcCCCCcCEECCcCCCCcCCCCCCceEChhccChh
Confidence 35689999874 33 3333 3899999999987554322 699996543
No 91
>2yql_A PHD finger protein 21A; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=73.90 E-value=0.32 Score=33.82 Aligned_cols=44 Identities=32% Similarity=0.885 Sum_probs=30.1
Q ss_pred CCcccccccccccccCCccEEe-CCCCccChhhHHHHHhcCC----CCCCccc
Q 021283 229 GHDAECAICKENLLVGDKMQEL-PCKHTFHPPCLKPWLDEHN----SCPICRH 276 (314)
Q Consensus 229 ~~~~~C~ICLe~~~~~~~v~~L-PCgH~FH~~CI~~WL~~~~----tCPvCR~ 276 (314)
..+..|.||... ++ ++.- .|...||..|+.+-|.... .||.|+.
T Consensus 7 ~~~~~C~vC~~~---g~-ll~Cd~C~~~~H~~Cl~ppl~~~p~g~W~C~~C~~ 55 (56)
T 2yql_A 7 GHEDFCSVCRKS---GQ-LLMCDTCSRVYHLDCLDPPLKTIPKGMWICPRCQD 55 (56)
T ss_dssp SSCCSCSSSCCS---SC-CEECSSSSCEECSSSSSSCCCSCCCSSCCCHHHHC
T ss_pred CCCCCCccCCCC---Ce-EEEcCCCCcceECccCCCCcCCCCCCceEChhhhC
Confidence 346789999874 23 3333 3899999999987554322 5888854
No 92
>2hy6_A General control protein GCN4; protein design, parallel heptamer, protein structure, biosyn protein; 1.25A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2nrn_A 3crp_A 2b1f_A 3crp_B 2ipz_A 3ck4_A 3ck4_B 2b22_A 1ce9_A
Probab=72.55 E-value=6.9 Score=24.60 Aligned_cols=29 Identities=21% Similarity=0.376 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhh
Q 021283 6 GLRQQLEELQKQLGKKLRFEDSVANINSLLRD 37 (314)
Q Consensus 6 ~~~~~l~~~~~~l~~k~~~~~a~~~~~~~~~~ 37 (314)
.|+..+++| |++|...+..|.+|++++..
T Consensus 5 QLEdkVEeL---l~~~~~Le~eV~RL~~ll~~ 33 (34)
T 2hy6_A 5 QLADAVEEL---ASANYHLANAVARLAKAVGE 33 (34)
T ss_dssp HHHHHHHHH---HHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHH---HHhhHHHHHHHHHHHHHhcc
Confidence 344444444 68899999999999999865
No 93
>2kgg_A Histone demethylase jarid1A; PHD finger, histone modification, leukemia, alternative splicing, chromatin regulator, developmental protein; NMR {Homo sapiens} PDB: 2kgi_A* 3gl6_A*
Probab=72.02 E-value=2.8 Score=28.48 Aligned_cols=43 Identities=19% Similarity=0.314 Sum_probs=28.2
Q ss_pred cccccccccccCCccEEe--CCCCccChhhHHHH----HhcCCCCCCcc
Q 021283 233 ECAICKENLLVGDKMQEL--PCKHTFHPPCLKPW----LDEHNSCPICR 275 (314)
Q Consensus 233 ~C~ICLe~~~~~~~v~~L--PCgH~FH~~CI~~W----L~~~~tCPvCR 275 (314)
.|.||...+..+...+.- .|...||..|+.-- ....-.||.|+
T Consensus 4 ~cc~C~~p~~~~~~mI~Cd~~C~~WfH~~Cvgl~~~~~~~~~~~C~~C~ 52 (52)
T 2kgg_A 4 AAQNCQRPCKDKVDWVQCDGGCDEWFHQVCVGVSPEMAENEDYICINCA 52 (52)
T ss_dssp SCTTCCCCCCTTCCEEECTTTTCCEEETTTTTCCHHHHHHSCCCCSCC-
T ss_pred cCCCCcCccCCCCcEEEeCCCCCccCcccccCCCccccCCCCEECCCCC
Confidence 578898887544444433 48889999997421 12566899885
No 94
>2ro1_A Transcription intermediary factor 1-beta; KAP, TIF, PHD finger, bromodomain, SUMO, acetylation, alternative splicing, metal-binding, nucleus; NMR {Homo sapiens}
Probab=71.98 E-value=0.98 Score=39.13 Aligned_cols=44 Identities=30% Similarity=0.669 Sum_probs=30.7
Q ss_pred cccccccccccccCCccEEeCCCCccChhhHHHHHhcC----CCCCCcccc
Q 021283 231 DAECAICKENLLVGDKMQELPCKHTFHPPCLKPWLDEH----NSCPICRHE 277 (314)
Q Consensus 231 ~~~C~ICLe~~~~~~~v~~LPCgH~FH~~CI~~WL~~~----~tCPvCR~~ 277 (314)
+..|.||... ++.+..-.|...||..|+.+=+... -.||.|+..
T Consensus 2 ~~~C~~C~~~---g~ll~Cd~C~~~~H~~Cl~p~l~~~p~g~W~C~~C~~~ 49 (189)
T 2ro1_A 2 ATICRVCQKP---GDLVMCNQCEFCFHLDCHLPALQDVPGEEWSCSLCHVL 49 (189)
T ss_dssp CCCBTTTCCC---SSCCCCTTTCCBCCSTTSTTCCSSCCCTTCCTTTTSCS
T ss_pred CCcCccCCCC---CceeECCCCCchhccccCCCCcccCCCCCCCCcCccCC
Confidence 4579999864 3433333488999999998755432 269999865
No 95
>3i2d_A E3 SUMO-protein ligase SIZ1; signal transduction, replication, ring E3, PIAS, ubiquitin, UBC9, metal-binding, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=71.22 E-value=2.5 Score=40.61 Aligned_cols=57 Identities=18% Similarity=0.412 Sum_probs=37.0
Q ss_pred cccccccccccccCCccEEeCCCCc--cChhhHHHHHhc--CCCCCCcccccCCCCcchhhHH
Q 021283 231 DAECAICKENLLVGDKMQELPCKHT--FHPPCLKPWLDE--HNSCPICRHELQTDDHAYESWK 289 (314)
Q Consensus 231 ~~~C~ICLe~~~~~~~v~~LPCgH~--FH~~CI~~WL~~--~~tCPvCR~~l~~~d~~~~~~~ 289 (314)
...|||-+..+. ..++...|.|+ |...-+...... .-.||+|...+...+...+..-
T Consensus 249 SL~CPlS~~ri~--~PvRg~~C~HlQCFDl~sfL~~~~~~~~W~CPIC~k~~~~~dL~ID~~~ 309 (371)
T 3i2d_A 249 SLQCPISYTRMK--YPSKSINCKHLQCFDALWFLHSQLQIPTWQCPVCQIDIALENLAISEFV 309 (371)
T ss_dssp ESBCTTTSSBCS--SEEEETTCCSSCCEEHHHHHHHHHHSCCCBCTTTCCBCCGGGEEEBHHH
T ss_pred eecCCCcccccc--ccCcCCcCCCcceECHHHHHHHhhcCCceeCCCCCcccCHHHeeEcHHH
Confidence 468999888873 45666779998 544333333322 3379999988866665555443
No 96
>2yru_A Steroid receptor RNA activator 1; SRAP, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=69.67 E-value=8.9 Score=30.78 Aligned_cols=85 Identities=20% Similarity=0.241 Sum_probs=42.8
Q ss_pred HHHHHHHHHHHHH---HhhhhhHHHHHHHHHHHHhhh-CCCCChhhhHHH-----------HHHHHHHHHHhc-CCCCCc
Q 021283 5 EGLRQQLEELQKQ---LGKKLRFEDSVANINSLLRDR-FPAASPTLRNQF-----------YSVVCRVATILK-TRYTAP 68 (314)
Q Consensus 5 ~~~~~~l~~~~~~---l~~k~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~-----------~~~v~~~~~~l~-~~~~~~ 68 (314)
+.|+..|+++.+. -.+|++.+++-.+|.-|...= =-.-|+.....+ |.+...+-+-|- +.+.--
T Consensus 16 ~~l~~~l~~~l~~~~~~~~k~~~~D~~KRL~~LfdkLn~~~Ls~~v~~~L~~l~~al~~~dy~~A~~ih~~l~t~~~~E~ 95 (118)
T 2yru_A 16 EDVLRPLEQALEDCHGHTKKQVCDDISRRLALLREQWAGGKLSIPVKKRMALLVQELLHHQWDAADDIHRSLMVDHVTEV 95 (118)
T ss_dssp HHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSTHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCcHHHH
Confidence 3466666666442 235666777777776554320 011244333332 333332223333 333446
Q ss_pred hhhHHhH-HHHHHHhhhccCcc
Q 021283 69 GFWLAGL-RLFELAESLVSDPS 89 (314)
Q Consensus 69 ~~w~~gl-~~f~~~~~~~~~~~ 89 (314)
+.|+.|| .|..++..+...++
T Consensus 96 ~~Wm~GlKrLI~~a~~~~~~~~ 117 (118)
T 2yru_A 96 SQWMVGVKRLIAEKKSLSGPSS 117 (118)
T ss_dssp TTTHHHHHHHHHHHHHHHSCCC
T ss_pred HhHHHHHHHHHHHHHHcCCCCC
Confidence 6799997 56666666655543
No 97
>1xwh_A Autoimmune regulator; PHD domain, Zn binding domain, apeced, nucleosome, E3 ligase, transcription; NMR {Homo sapiens} PDB: 2ke1_A 2kft_A
Probab=69.56 E-value=0.7 Score=33.18 Aligned_cols=44 Identities=34% Similarity=0.844 Sum_probs=30.9
Q ss_pred CcccccccccccccCCccEEe-CCCCccChhhHHHHHhcCC----CCCCcccc
Q 021283 230 HDAECAICKENLLVGDKMQEL-PCKHTFHPPCLKPWLDEHN----SCPICRHE 277 (314)
Q Consensus 230 ~~~~C~ICLe~~~~~~~v~~L-PCgH~FH~~CI~~WL~~~~----tCPvCR~~ 277 (314)
.+..|.||... ++ ++.- .|...||..|+.+-|.... .||.|...
T Consensus 7 ~~~~C~vC~~~---g~-ll~CD~C~~~fH~~Cl~ppl~~~P~g~W~C~~C~~~ 55 (66)
T 1xwh_A 7 NEDECAVCRDG---GE-LICCDGCPRAFHLACLSPPLREIPSGTWRCSSCLQA 55 (66)
T ss_dssp CCCSBSSSSCC---SS-CEECSSCCCEECTTTSSSCCSSCCSSCCCCHHHHHT
T ss_pred CCCCCccCCCC---CC-EEEcCCCChhhcccccCCCcCcCCCCCeECccccCc
Confidence 46789999864 33 3333 3889999999987555322 69999653
No 98
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=68.84 E-value=1.6 Score=34.44 Aligned_cols=44 Identities=32% Similarity=0.644 Sum_probs=28.4
Q ss_pred cccccccccccCCccEEeC-CCCccChhhHHHHHhcC----CCCCCccc
Q 021283 233 ECAICKENLLVGDKMQELP-CKHTFHPPCLKPWLDEH----NSCPICRH 276 (314)
Q Consensus 233 ~C~ICLe~~~~~~~v~~LP-CgH~FH~~CI~~WL~~~----~tCPvCR~ 276 (314)
.|.||...-...+.+..-- |...||..|+.+-|... =.||.|+.
T Consensus 63 ~C~vC~~~~~~~~~ll~Cd~C~~~yH~~Cl~p~l~~~P~~~W~C~~C~~ 111 (112)
T 3v43_A 63 TCSSCRDQGKNADNMLFCDSCDRGFHMECCDPPLTRMPKGMWICQICRP 111 (112)
T ss_dssp CBTTTCCCCCTTCCCEECTTTCCEECGGGCSSCCSSCCSSCCCCTTTSC
T ss_pred ccccccCcCCCccceEEcCCCCCeeecccCCCCCCCCCCCCeECCCCCC
Confidence 5777776422222333333 89999999998765532 27999974
No 99
>4fo9_A E3 SUMO-protein ligase PIAS2; E3 ligase, pinit domain, SP-ring domain, structural GE consortium, SGC; 2.39A {Homo sapiens} PDB: 2asq_B
Probab=67.56 E-value=3.4 Score=39.53 Aligned_cols=58 Identities=16% Similarity=0.331 Sum_probs=38.7
Q ss_pred cccccccccccccCCccEEeCCCCc--cChhhHHHHHhcC--CCCCCcccccCCCCcchhhHHH
Q 021283 231 DAECAICKENLLVGDKMQELPCKHT--FHPPCLKPWLDEH--NSCPICRHELQTDDHAYESWKE 290 (314)
Q Consensus 231 ~~~C~ICLe~~~~~~~v~~LPCgH~--FH~~CI~~WL~~~--~tCPvCR~~l~~~d~~~~~~~~ 290 (314)
...|||-...+. ..++...|.|+ |...-+....... -.||+|...+...+...+..-.
T Consensus 215 SL~CPlS~~ri~--~P~Rg~~C~HlqCFDl~sfL~~~~~~~~W~CPiC~k~~~~~dL~ID~~~~ 276 (360)
T 4fo9_A 215 SLMCPLGKMRLT--IPCRAVTCTHLQCFDAALYLQMNEKKPTWICPVCDKKAAYESLILDGLFM 276 (360)
T ss_dssp ESBCTTTCSBCS--SEEEETTCCCCCCEEHHHHHHHHHHSCCCBCTTTCSBCCGGGEEEBHHHH
T ss_pred eeeCCCccceec--cCCcCCCCCCCccCCHHHHHHHHhhCCCeECCCCCcccCHHHeEEcHHHH
Confidence 458999888873 45666679998 5544444433333 3799999998877766655543
No 100
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=67.34 E-value=1.6 Score=34.16 Aligned_cols=46 Identities=26% Similarity=0.557 Sum_probs=29.6
Q ss_pred CcccccccccccccCCccEEeCCCCccChhhHHHHHhc----CCCCCCcc
Q 021283 230 HDAECAICKENLLVGDKMQELPCKHTFHPPCLKPWLDE----HNSCPICR 275 (314)
Q Consensus 230 ~~~~C~ICLe~~~~~~~v~~LPCgH~FH~~CI~~WL~~----~~tCPvCR 275 (314)
.+..|.||...-...+.+.--.|...||..|+...+.. .-.||.|+
T Consensus 6 ~~~~C~~C~~~g~~~~ll~C~~C~~~~H~~Cl~~~~~~~~~~~W~C~~C~ 55 (111)
T 2ysm_A 6 SGANCAVCDSPGDLLDQFFCTTCGQHYHGMCLDIAVTPLKRAGWQCPECK 55 (111)
T ss_dssp CCSCBTTTCCCCCTTTSEECSSSCCEECTTTTTCCCCTTTSTTCCCTTTC
T ss_pred CCCCCcCCCCCCCCcCCeECCCCCCCcChHHhCCccccccccCccCCcCC
Confidence 46789999876321122333349999999999887642 22566654
No 101
>2yt5_A Metal-response element-binding transcription factor 2; zinc-regulated factor 1, ZIRF1, metal-response element DNA-binding protein M96; NMR {Mus musculus}
Probab=67.33 E-value=0.85 Score=32.44 Aligned_cols=51 Identities=27% Similarity=0.610 Sum_probs=33.6
Q ss_pred CCccccccccccccc-CCccEEeC-CCCccChhhHHHHHh-------cCCCCCCcccccC
Q 021283 229 GHDAECAICKENLLV-GDKMQELP-CKHTFHPPCLKPWLD-------EHNSCPICRHELQ 279 (314)
Q Consensus 229 ~~~~~C~ICLe~~~~-~~~v~~LP-CgH~FH~~CI~~WL~-------~~~tCPvCR~~l~ 279 (314)
..+..|.||...... ...++.-. |...||..|+.+-|. ..-.||.|+....
T Consensus 4 ~~~~~C~vC~~~~~~~~~~ll~Cd~C~~~~H~~C~~p~l~~~~~~p~~~W~C~~C~~~~~ 63 (66)
T 2yt5_A 4 GSSGVCTICQEEYSEAPNEMVICDKCGQGYHQLCHTPHIDSSVIDSDEKWLCRQCVFATT 63 (66)
T ss_dssp CCCCCBSSSCCCCCBTTBCEEECSSSCCEEETTTSSSCCCHHHHHSSCCCCCHHHHHTTS
T ss_pred CCCCCCCCCCCCCCCCCCCEEECCCCChHHHhhhCCCcccccccCCCCCEECCCCcCccc
Confidence 346789999976432 22333333 999999999886442 2237999976543
No 102
>2vpb_A Hpygo1, pygopus homolog 1; gene regulation, WNT signaling pathway, WNT signaling complex, chromosomal rearrangement, signaling protein; 1.59A {Homo sapiens} PDB: 2vpd_A 2yyr_A* 2dx8_A* 2vp7_A 2vpg_A* 2vpe_A*
Probab=67.22 E-value=3.1 Score=29.83 Aligned_cols=32 Identities=22% Similarity=0.453 Sum_probs=24.0
Q ss_pred CcccccccccccccCCccEEe--CCCCccChhhH
Q 021283 230 HDAECAICKENLLVGDKMQEL--PCKHTFHPPCL 261 (314)
Q Consensus 230 ~~~~C~ICLe~~~~~~~v~~L--PCgH~FH~~CI 261 (314)
....|++|...+..+...+.. .|.-.||..|+
T Consensus 7 ~~~~C~~C~~p~~~~~~mI~CD~~C~~WfH~~Cv 40 (65)
T 2vpb_A 7 PVYPCGICTNEVNDDQDAILCEASCQKWFHRICT 40 (65)
T ss_dssp --CBCTTTCSBCCTTSCEEEBTTTTCCEEEHHHH
T ss_pred CcCcCccCCCccCCCCCeEecccCccccCchhcc
Confidence 456899999998665554444 58999999997
No 103
>2e6r_A Jumonji/ARID domain-containing protein 1D; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=67.21 E-value=0.48 Score=36.50 Aligned_cols=46 Identities=30% Similarity=0.562 Sum_probs=31.0
Q ss_pred CcccccccccccccCCccEEeC-CCCccChhhHHHHHhcCC----CCCCccc
Q 021283 230 HDAECAICKENLLVGDKMQELP-CKHTFHPPCLKPWLDEHN----SCPICRH 276 (314)
Q Consensus 230 ~~~~C~ICLe~~~~~~~v~~LP-CgH~FH~~CI~~WL~~~~----tCPvCR~ 276 (314)
++..|.||...-.. +.++..- |...||..|+.+=|...+ .||.|+.
T Consensus 15 ~~~~C~vC~~~~~~-~~ll~CD~C~~~~H~~Cl~Ppl~~~P~g~W~C~~C~~ 65 (92)
T 2e6r_A 15 DSYICQVCSRGDED-DKLLFCDGCDDNYHIFCLLPPLPEIPRGIWRCPKCIL 65 (92)
T ss_dssp CCCCCSSSCCSGGG-GGCEECTTTCCEECSSSSSSCCSSCCSSCCCCHHHHH
T ss_pred CCCCCccCCCcCCC-CCEEEcCCCCchhccccCCCCcccCCCCCcCCccCcC
Confidence 45689999876422 2333433 999999999986554322 5999965
No 104
>2ri7_A Nucleosome-remodeling factor subunit BPTF; zinc finger, alpha-helical bundle, dimethyl-lysine, bromodom chromatin regulator, metal-binding, nucleus; HET: MLY; 1.45A {Homo sapiens} PDB: 2fsa_A* 2f6n_A 2f6j_A* 3qzv_A* 3uv2_A* 3qzt_A* 3qzs_A* 2fui_A 2fuu_A*
Probab=66.42 E-value=1.2 Score=37.60 Aligned_cols=47 Identities=21% Similarity=0.446 Sum_probs=31.4
Q ss_pred CcccccccccccccCCccEEeC-CCCccChhhHHHHH-----hcCCCCCCcccc
Q 021283 230 HDAECAICKENLLVGDKMQELP-CKHTFHPPCLKPWL-----DEHNSCPICRHE 277 (314)
Q Consensus 230 ~~~~C~ICLe~~~~~~~v~~LP-CgH~FH~~CI~~WL-----~~~~tCPvCR~~ 277 (314)
+...| ||......+...+..- |...||..|+.--- ...-.||.|+..
T Consensus 7 ~~~~C-~C~~~~~~~~~mi~Cd~C~~WfH~~Cv~~~~~~~~~~~~~~C~~C~~~ 59 (174)
T 2ri7_A 7 TKLYC-ICKTPEDESKFYIGCDRCQNWYHGRCVGILQSEAELIDEYVCPQCQST 59 (174)
T ss_dssp CCEET-TTTEECCTTSCEEECTTTCCEEEHHHHTCCHHHHTTCSSCCCHHHHHH
T ss_pred CCcEe-eCCCCCCCCCCEeECCCCCchhChhhcCCchhhccCccCeecCCCcch
Confidence 35678 9998764334444444 99999999985321 134479999763
No 105
>3c3f_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-alpha-beta) backbone...; helix bundle, foldamer, unknown function, de novo protein; HET: B3K B3D B3E BIL B3L BAL; 2.00A {Synthetic} SCOP: h.1.3.1
Probab=66.31 E-value=10 Score=23.79 Aligned_cols=29 Identities=28% Similarity=0.463 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhh
Q 021283 6 GLRQQLEELQKQLGKKLRFEDSVANINSLLRD 37 (314)
Q Consensus 6 ~~~~~l~~~~~~l~~k~~~~~a~~~~~~~~~~ 37 (314)
.|+..+++| |++|...+.-|.+|+++|..
T Consensus 5 QLEdKVEeL---l~~~~~Le~EV~RLk~ll~~ 33 (34)
T 3c3f_A 5 QIEXKLEXI---LSXLYHXENEXARIXKLLXE 33 (34)
T ss_dssp HHHHHHHHH---HHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHH---HhhhhHHHHHHHHHHHHHhc
Confidence 455555554 67899999999999999875
No 106
>1wep_A PHF8; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Mus musculus} SCOP: g.50.1.2
Probab=66.11 E-value=3.7 Score=30.28 Aligned_cols=47 Identities=26% Similarity=0.562 Sum_probs=30.7
Q ss_pred cccccccccccccCCccEEeC-CCCccChhhHHHHHh-----cCCCCCCccccc
Q 021283 231 DAECAICKENLLVGDKMQELP-CKHTFHPPCLKPWLD-----EHNSCPICRHEL 278 (314)
Q Consensus 231 ~~~C~ICLe~~~~~~~v~~LP-CgH~FH~~CI~~WL~-----~~~tCPvCR~~l 278 (314)
...| ||...+..+...+..- |...||..|+.---. ..-.||.|+...
T Consensus 12 ~~~C-~C~~~~d~~~~MIqCd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~~~ 64 (79)
T 1wep_A 12 PVYC-LCRQPYNVNHFMIECGLCQDWFHGSCVGIEEENAVDIDIYHCPDCEAVF 64 (79)
T ss_dssp CCCS-TTSCSCCSSSCEEEBTTTCCEEEHHHHTCCHHHHTTCSBBCCTTTTTTS
T ss_pred ccEE-EcCCccCCCCceEEcCCCCCcEEeeecCcccccccCCCeEECCCccccc
Confidence 3456 8988774334444444 999999999842211 345799998654
No 107
>2l43_A N-teminal domain from histone H3.3, linker, PHD1 from bromodomain-containing protein...; PHD finger, histone CODE, transcription; NMR {Homo sapiens}
Probab=65.16 E-value=1.4 Score=33.60 Aligned_cols=53 Identities=19% Similarity=0.321 Sum_probs=33.7
Q ss_pred CCcccccccccccc-cCCccEEeC-CCCccChhhHHHHHh--cCCCCCCcccccCCC
Q 021283 229 GHDAECAICKENLL-VGDKMQELP-CKHTFHPPCLKPWLD--EHNSCPICRHELQTD 281 (314)
Q Consensus 229 ~~~~~C~ICLe~~~-~~~~v~~LP-CgH~FH~~CI~~WL~--~~~tCPvCR~~l~~~ 281 (314)
..+..|.||...-. ..+.++... |.-.||..|+.+-+. ..-.||.|.......
T Consensus 23 ~~~~~C~vC~~~~s~~~~~ll~CD~C~~~fH~~Cl~p~~vP~g~W~C~~C~~~~~~~ 79 (88)
T 2l43_A 23 DEDAVCSICMDGESQNSNVILFCDMCNLAVHQECYGVPYIPEGQWLCRHCLQSRARP 79 (88)
T ss_dssp CCCCCCSSCCSSSSCSEEEEEECSSSCCCCCHHHHTCSSCCSSCCCCHHHHHHTTSC
T ss_pred CCCCcCCcCCCCCCCCCCCEEECCCCCchhhcccCCCCccCCCceECccccCccchh
Confidence 34678999987531 112333333 888999999976432 122699997755443
No 108
>2bni_A General control protein GCN4; four helix bundle, antiparallel four helix bundle acyl transferase; HET: TYZ; 1.5A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2ccn_A 1w5k_A* 2ccf_A 2cce_A 1w5j_A* 1uo2_A 1gcl_A 1uo1_A 1unv_A 1uo0_A 1unt_A 1uo5_A 1unz_A 1unx_A 1unu_A 1unw_A 1uo4_A 1uo3_A 1uny_A 1u9f_A* ...
Probab=64.03 E-value=10 Score=23.78 Aligned_cols=29 Identities=31% Similarity=0.499 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhh
Q 021283 6 GLRQQLEELQKQLGKKLRFEDSVANINSLLRD 37 (314)
Q Consensus 6 ~~~~~l~~~~~~l~~k~~~~~a~~~~~~~~~~ 37 (314)
.|+..+++| |++|...+.-|.+|+++|..
T Consensus 5 QLEdKvEeL---l~~~~~L~~EV~RLk~lL~~ 33 (34)
T 2bni_A 5 QIEDKLEEI---LSKGHHICNELARIKKLLGE 33 (34)
T ss_dssp HHHHHHHHH---HHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHH---HHccHHHHHHHHHHHHHhcc
Confidence 345555554 78999999999999999875
No 109
>2lbm_A Transcriptional regulator ATRX; metal binding protein-structural protein compl; HET: M3L; NMR {Homo sapiens} PDB: 2ld1_A
Probab=62.21 E-value=5.7 Score=32.99 Aligned_cols=45 Identities=29% Similarity=0.609 Sum_probs=31.1
Q ss_pred CCcccccccccccccCCccEEeCCCCccChhhHHHHHh-----------cCCCCCCccc
Q 021283 229 GHDAECAICKENLLVGDKMQELPCKHTFHPPCLKPWLD-----------EHNSCPICRH 276 (314)
Q Consensus 229 ~~~~~C~ICLe~~~~~~~v~~LPCgH~FH~~CI~~WL~-----------~~~tCPvCR~ 276 (314)
+.+..|.||.+. ++.+.-=.|-..||..||.+-|. ..-.||+|+.
T Consensus 61 g~~d~C~vC~~G---G~LlcCD~Cpr~Fh~~Cl~p~l~~~~l~~i~~p~~~W~C~~C~~ 116 (142)
T 2lbm_A 61 GMDEQCRWCAEG---GNLICCDFCHNAFCKKCILRNLGRKELSTIMDENNQWYCYICHP 116 (142)
T ss_dssp SCBCSCSSSCCC---SSEEECSSSCCEEEHHHHHHHTCHHHHHHHHTSTTCCCCTTTCC
T ss_pred CCCCeecccCCC---CcEEeCCCCCCeeeHhhcCCCCChhhhhhcccCCCCCEeecccC
Confidence 346789999875 23222224889999999997653 1227999974
No 110
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=61.03 E-value=4.7 Score=32.54 Aligned_cols=34 Identities=18% Similarity=0.399 Sum_probs=25.3
Q ss_pred cccccccccccccCCccEEeC-CCCccChhhHHHH
Q 021283 231 DAECAICKENLLVGDKMQELP-CKHTFHPPCLKPW 264 (314)
Q Consensus 231 ~~~C~ICLe~~~~~~~v~~LP-CgH~FH~~CI~~W 264 (314)
...|.+|...|..-....... ||++||..|....
T Consensus 69 ~~~C~~C~~~Fs~~~RrHHCR~CG~vfC~~Cs~~~ 103 (125)
T 1joc_A 69 VQNCMACGKGFSVTVRRHHCRQCGNIFCAECSAKN 103 (125)
T ss_dssp CCBCTTTCCBCCSSSCCEECTTTCCEECGGGSCEE
T ss_pred CCCCcCcCCccccccccccCCCCCeEEChHHhCCc
Confidence 458999999996544444444 9999999996654
No 111
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=60.67 E-value=3.9 Score=35.84 Aligned_cols=34 Identities=15% Similarity=0.427 Sum_probs=25.8
Q ss_pred cccccccccccccCCccEEeC-CCCccChhhHHHH
Q 021283 231 DAECAICKENLLVGDKMQELP-CKHTFHPPCLKPW 264 (314)
Q Consensus 231 ~~~C~ICLe~~~~~~~v~~LP-CgH~FH~~CI~~W 264 (314)
+..|.+|...|..-....... ||++||..|....
T Consensus 161 ~~~C~~C~~~F~~~~rrhhCr~CG~v~C~~Cs~~~ 195 (220)
T 1dvp_A 161 GRVCHRCRVEFTFTNRKHHCRNCGQVFCGQCTAKQ 195 (220)
T ss_dssp CSBCTTTCCBCCSSSCCEECTTTCCEECSTTSCEE
T ss_pred CCccCCCCCccCCcccccccCCcCCEEChHHhCCe
Confidence 569999999986544444455 9999999997654
No 112
>1weu_A Inhibitor of growth family, member 4; structural genomics, PHD domain, ING1-like protein, DNA binding protein, NPPSFA; NMR {Mus musculus} SCOP: g.50.1.2
Probab=60.04 E-value=4.5 Score=31.06 Aligned_cols=44 Identities=27% Similarity=0.618 Sum_probs=27.3
Q ss_pred cccccccccccccCCccEEeC--CC-CccChhhHHHHHhc----CCCCCCccccc
Q 021283 231 DAECAICKENLLVGDKMQELP--CK-HTFHPPCLKPWLDE----HNSCPICRHEL 278 (314)
Q Consensus 231 ~~~C~ICLe~~~~~~~v~~LP--Cg-H~FH~~CI~~WL~~----~~tCPvCR~~l 278 (314)
...| ||..... +..+.-=. |. ..||..|+. |.. .-.||.|+...
T Consensus 36 ~~yC-iC~~~~~-g~MI~CD~~dC~~~WfH~~CVg--l~~~p~g~W~Cp~C~~~~ 86 (91)
T 1weu_A 36 PTYC-LCHQVSY-GEMIGCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQES 86 (91)
T ss_dssp CBCS-TTCCBCC-SCCCCCSCSSCSCCCCCSTTTT--CSSCCCSSCCCTTTCCCC
T ss_pred CcEE-ECCCCCC-CCEeEecCCCCCCCCEecccCC--cCcCCCCCEECcCccCcC
Confidence 4567 9988642 33222223 55 689999986 332 33799997644
No 113
>1vfy_A Phosphatidylinositol-3-phosphate binding FYVE domain of protein VPS27; endosome maturation, intracellular trafficking; 1.15A {Saccharomyces cerevisiae} SCOP: g.50.1.1
Probab=58.97 E-value=6.1 Score=28.65 Aligned_cols=34 Identities=15% Similarity=0.345 Sum_probs=24.5
Q ss_pred cccccccccccccCCccEEeC-CCCccChhhHHHH
Q 021283 231 DAECAICKENLLVGDKMQELP-CKHTFHPPCLKPW 264 (314)
Q Consensus 231 ~~~C~ICLe~~~~~~~v~~LP-CgH~FH~~CI~~W 264 (314)
+..|.+|...|..-.....-. ||++||..|....
T Consensus 11 ~~~C~~C~~~F~~~~RrHHCR~CG~v~C~~Cs~~~ 45 (73)
T 1vfy_A 11 SDACMICSKKFSLLNRKHHCRSCGGVFCQEHSSNS 45 (73)
T ss_dssp CSBCTTTCCBCBTTBCCEECTTTCCEECGGGSCEE
T ss_pred CCcccCCCCccCCccccccCCCCCEEEcccccCCe
Confidence 358999999986543333444 9999999996543
No 114
>1y02_A CARP2, FYVE-ring finger protein sakura; zinc-binding module, phosphoinositide binding, caspase regulation, metal binding protein; 1.80A {Homo sapiens} SCOP: a.140.2.1 g.50.1.1
Probab=57.62 E-value=1.2 Score=36.02 Aligned_cols=48 Identities=19% Similarity=0.435 Sum_probs=31.6
Q ss_pred cccccccccccccCCccEEe-CCCCccChhhHHHHHhcCCCCCCccccc
Q 021283 231 DAECAICKENLLVGDKMQEL-PCKHTFHPPCLKPWLDEHNSCPICRHEL 278 (314)
Q Consensus 231 ~~~C~ICLe~~~~~~~v~~L-PCgH~FH~~CI~~WL~~~~tCPvCR~~l 278 (314)
...|.+|-..|..-...... .||.+||..|..........|-.|-..+
T Consensus 19 ~~~C~~C~~~Fs~~~RkHHCR~CG~ifC~~Cs~~~~~~vRVC~~C~~~~ 67 (120)
T 1y02_A 19 EPSCKSCGAHFANTARKQTCLDCKKNFCMTCSSQVGNGPRLCLLCQRFR 67 (120)
T ss_dssp -CCCTTTCCCCSSGGGCEECTTTCCEECGGGEEC----CCEEHHHHHHH
T ss_pred cCcccCcCCccccccccccCCCCCCeeCHHHhCCCCCCceECHHHHHHH
Confidence 45899999998543333334 4999999999777665567788885544
No 115
>3mpx_A FYVE, rhogef and PH domain-containing protein 5; structural genomics consortium, DH domain, SGC, L binding protein; 2.80A {Homo sapiens}
Probab=57.36 E-value=2.2 Score=40.70 Aligned_cols=48 Identities=17% Similarity=0.295 Sum_probs=0.0
Q ss_pred cccccccccccccCCccEEe-CCCCccChhhHHHHHh-------cCCCCCCccccc
Q 021283 231 DAECAICKENLLVGDKMQEL-PCKHTFHPPCLKPWLD-------EHNSCPICRHEL 278 (314)
Q Consensus 231 ~~~C~ICLe~~~~~~~v~~L-PCgH~FH~~CI~~WL~-------~~~tCPvCR~~l 278 (314)
...|.+|...|..-...... .||++||..|...++. ....|-.|-..+
T Consensus 375 ~~~c~~c~~~f~~~~r~h~Cr~Cg~~~C~~Cs~~~~~~~~~~~~~~rvC~~C~~~l 430 (434)
T 3mpx_A 375 VMMCMNCGCDFSLTLRRHHCHACGKIVCRNCSRNKYPLKYLKDRMAKVCDGCFGEL 430 (434)
T ss_dssp --------------------------------------------------------
T ss_pred CCcCCCcCCCCCCcchhhhcccCcCEeehhhCCCeeeCCCCCCCcCEecHHHHHHH
Confidence 56899999988543322233 4999999999977642 123677775544
No 116
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=57.19 E-value=11 Score=29.46 Aligned_cols=33 Identities=24% Similarity=0.512 Sum_probs=21.9
Q ss_pred Ccccccccccccc-----cCCccEEe-CCCCccChhhHH
Q 021283 230 HDAECAICKENLL-----VGDKMQEL-PCKHTFHPPCLK 262 (314)
Q Consensus 230 ~~~~C~ICLe~~~-----~~~~v~~L-PCgH~FH~~CI~ 262 (314)
....|.||+..=. .++.++.- .|+..||..|+.
T Consensus 4 p~~~C~~C~~~~~~~~~g~~~~Ll~C~~C~~~~H~~Cl~ 42 (112)
T 3v43_A 4 PIPICSFCLGTKEQNREKKPEELISCADCGNSGHPSCLK 42 (112)
T ss_dssp CCSSBTTTCCCTTCCTTSCCCCCEECTTTCCEECHHHHT
T ss_pred cCccccccCCchhhCcCCCchhceEhhhcCCCCCCchhc
Confidence 3568999986521 12233333 499999999995
No 117
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=57.12 E-value=5 Score=35.49 Aligned_cols=34 Identities=21% Similarity=0.492 Sum_probs=25.9
Q ss_pred cccccccccccccCCccEEeC-CCCccChhhHHHH
Q 021283 231 DAECAICKENLLVGDKMQELP-CKHTFHPPCLKPW 264 (314)
Q Consensus 231 ~~~C~ICLe~~~~~~~v~~LP-CgH~FH~~CI~~W 264 (314)
+..|.+|...|..-....... ||++||..|...+
T Consensus 164 ~~~C~~C~~~F~~~~RrhHCR~CG~v~C~~Cs~~~ 198 (226)
T 3zyq_A 164 AEECHRCRVQFGVMTRKHHCRACGQIFCGKCSSKY 198 (226)
T ss_dssp CSBCTTTCCBCBTTBCCEECTTTCCEECTTTCCEE
T ss_pred CCCCcCcCCCCCccccccccCCCcCEeChhhcCCc
Confidence 468999999986544444444 9999999997654
No 118
>3shb_A E3 ubiquitin-protein ligase UHRF1; unmodified histone, methylation, UHRF1, PHD, ligase-NUCL protein complex; 1.80A {Homo sapiens}
Probab=56.35 E-value=1.7 Score=32.41 Aligned_cols=43 Identities=35% Similarity=0.663 Sum_probs=25.3
Q ss_pred cccccccccccCCccEEe-CCCCccChhhHHHHHhcC-----CCCCCccc
Q 021283 233 ECAICKENLLVGDKMQEL-PCKHTFHPPCLKPWLDEH-----NSCPICRH 276 (314)
Q Consensus 233 ~C~ICLe~~~~~~~v~~L-PCgH~FH~~CI~~WL~~~-----~tCPvCR~ 276 (314)
.|.||...-.. +.+..- .|...||..|+.+-|... =.||.|+.
T Consensus 28 ~C~vC~~~~d~-~~ll~CD~C~~~yH~~Cl~PpL~~~P~g~~W~C~~C~~ 76 (77)
T 3shb_A 28 ACHLCGGRQDP-DKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRN 76 (77)
T ss_dssp SBTTTCCCSCG-GGEEECTTTCCEEETTTSSSCCSSCCSSSCCCCTTTC-
T ss_pred cCCccCCCCCC-cceeEeCCCCCccCcccCCCcccCCCCCCceECcCccc
Confidence 45555544211 222222 388999999998765531 26999975
No 119
>3ask_A E3 ubiquitin-protein ligase UHRF1; histone reader modules, epigenetic regulation, trimethylaion of lysine residue, ligase-DNA binding protein; HET: M3L; 2.90A {Homo sapiens}
Probab=55.80 E-value=2.5 Score=37.86 Aligned_cols=44 Identities=34% Similarity=0.670 Sum_probs=25.7
Q ss_pred ccccccccccccCCccEEe-CCCCccChhhHHHHHhc-----CCCCCCccc
Q 021283 232 AECAICKENLLVGDKMQEL-PCKHTFHPPCLKPWLDE-----HNSCPICRH 276 (314)
Q Consensus 232 ~~C~ICLe~~~~~~~v~~L-PCgH~FH~~CI~~WL~~-----~~tCPvCR~ 276 (314)
..|.||...-.. ..+... .|...||..|+.+=|.. .=.||.|+.
T Consensus 175 c~C~vC~~~~~~-~~lL~CD~C~~~yH~~CL~PPL~~vP~G~~W~Cp~C~~ 224 (226)
T 3ask_A 175 CACHLCGGRQDP-DKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRN 224 (226)
T ss_dssp TSCSSSCCCCC---CCEECSSSCCEECSCC--CCCCSCCSSSCCCCGGGC-
T ss_pred CCCcCCCCCCCC-CCeEEcCCCCcceeCccCCCCcccCCCCCCCCCcCCcC
Confidence 368888764222 233333 39999999999965542 226999975
No 120
>2e6s_A E3 ubiquitin-protein ligase UHRF2; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=55.72 E-value=2.2 Score=31.69 Aligned_cols=44 Identities=27% Similarity=0.611 Sum_probs=28.2
Q ss_pred ccccccccccccCCccEEe-CCCCccChhhHHHHHhc-----CCCCCCccc
Q 021283 232 AECAICKENLLVGDKMQEL-PCKHTFHPPCLKPWLDE-----HNSCPICRH 276 (314)
Q Consensus 232 ~~C~ICLe~~~~~~~v~~L-PCgH~FH~~CI~~WL~~-----~~tCPvCR~ 276 (314)
-.|.||...-.. ..++.- .|...||..|+.+=|.. .=.||.|..
T Consensus 27 c~C~vC~~~~~~-~~ll~CD~C~~~yH~~Cl~Ppl~~~P~g~~W~C~~C~~ 76 (77)
T 2e6s_A 27 CSCRVCGGKHEP-NMQLLCDECNVAYHIYCLNPPLDKVPEEEYWYCPSCKT 76 (77)
T ss_dssp SSCSSSCCCCCS-TTEEECSSSCCEEETTSSSSCCSSCCCSSCCCCTTTCC
T ss_pred CCCcCcCCcCCC-CCEEEcCCCCccccccccCCCccCCCCCCCcCCcCccC
Confidence 367888764222 233333 38899999999865542 226999964
No 121
>3t7l_A Zinc finger FYVE domain-containing protein 16; structural genomics consortium, SGC, lipid BIND protein, transport protein; 1.09A {Homo sapiens}
Probab=55.72 E-value=6.9 Score=29.63 Aligned_cols=35 Identities=14% Similarity=0.376 Sum_probs=26.0
Q ss_pred cccccccccccccCCccEEeC-CCCccChhhHHHHH
Q 021283 231 DAECAICKENLLVGDKMQELP-CKHTFHPPCLKPWL 265 (314)
Q Consensus 231 ~~~C~ICLe~~~~~~~v~~LP-CgH~FH~~CI~~WL 265 (314)
...|.+|...|..-....... ||++||..|...+.
T Consensus 20 ~~~C~~C~~~F~~~~RrhhCr~CG~v~C~~Cs~~~~ 55 (90)
T 3t7l_A 20 APNCMNCQVKFTFTKRRHHCRACGKVFCGVCCNRKC 55 (90)
T ss_dssp CCBCTTTCCBCCSSSCCEECTTTCCEECGGGSCEEE
T ss_pred CCcCcCCCCcccchhhCccccCCCCEECCcccCCee
Confidence 458999999986544334444 99999999977653
No 122
>1wev_A Riken cDNA 1110020M19; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: g.50.1.2
Probab=55.21 E-value=1.4 Score=33.44 Aligned_cols=49 Identities=20% Similarity=0.676 Sum_probs=33.0
Q ss_pred cccccccccccccC-CccEEeC-CCCccChhhHHHHHhc--------CCCCCCcccccC
Q 021283 231 DAECAICKENLLVG-DKMQELP-CKHTFHPPCLKPWLDE--------HNSCPICRHELQ 279 (314)
Q Consensus 231 ~~~C~ICLe~~~~~-~~v~~LP-CgH~FH~~CI~~WL~~--------~~tCPvCR~~l~ 279 (314)
+..|.||...-... ..++..- |...||..|+.+-|.. .=.||.|+....
T Consensus 16 ~~~C~vC~~~~~~~~~~ll~CD~C~~~yH~~Cl~Ppl~~~~~~~p~g~W~C~~C~~~~~ 74 (88)
T 1wev_A 16 GLACVVCRQMTVASGNQLVECQECHNLYHQDCHKPQVTDKEVNDPRLVWYCARCTRQMK 74 (88)
T ss_dssp CCSCSSSCCCCCCTTCCEEECSSSCCEEETTTSSSCCCHHHHHCTTCCCCCHHHHHHHC
T ss_pred CCcCCCCCCCCCCCCCceEECCCCCCeEcCccCCCcccccccCCCCCCeeCccccchhh
Confidence 56899999764321 2333333 9999999999876541 227999976554
No 123
>1z2q_A LM5-1; membrane protein, FYVE domain, zinc-finger; NMR {Leishmania major}
Probab=54.66 E-value=7.9 Score=28.85 Aligned_cols=35 Identities=11% Similarity=0.242 Sum_probs=26.0
Q ss_pred CcccccccccccccCCccEEeC-CCCccChhhHHHH
Q 021283 230 HDAECAICKENLLVGDKMQELP-CKHTFHPPCLKPW 264 (314)
Q Consensus 230 ~~~~C~ICLe~~~~~~~v~~LP-CgH~FH~~CI~~W 264 (314)
+...|.+|...|..-.....-. ||++||..|....
T Consensus 20 ~~~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~~~ 55 (84)
T 1z2q_A 20 DAPACNGCGCVFTTTVRRHHCRNCGYVLCGDCSRHR 55 (84)
T ss_dssp TCCBCTTTCCBCCTTSCCEECTTTCCEECTGGGCCE
T ss_pred CCCCCcCcCCccccchhcccccCCCcEEChHHhCCe
Confidence 3568999999996544434444 9999999997664
No 124
>1uo4_A General control protein GCN4; four helix bundle, cavity, iodobenzene; 1.70A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1uo3_A 1unt_A 1uo5_A 1unu_A 1unv_A 1uo1_A 2ccf_A 2cce_A 1unx_A 1unw_A 1w5j_A* 1w5k_A* 1u9f_A* 3f86_A* 3f87_A* 3hez_A* 3c3f_A*
Probab=54.43 E-value=20 Score=22.46 Aligned_cols=29 Identities=31% Similarity=0.488 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhh
Q 021283 6 GLRQQLEELQKQLGKKLRFEDSVANINSLLRD 37 (314)
Q Consensus 6 ~~~~~l~~~~~~l~~k~~~~~a~~~~~~~~~~ 37 (314)
.|+..+++| |++|...|.-|.+|+++|..
T Consensus 5 QLEdKVEeL---l~~n~~Le~EV~RLk~LL~~ 33 (34)
T 1uo4_A 5 QIEDKGEEI---LSKLYHIENELARIKKLLGE 33 (34)
T ss_dssp HHHHHHHHH---HHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHH---HHhhHHHHHHHHHHHHHHcc
Confidence 355555554 67899999999999999864
No 125
>2ku3_A Bromodomain-containing protein 1; PHD finger, chromatin regulator, metal-binding, finger, signaling protein; NMR {Homo sapiens}
Probab=54.39 E-value=2.9 Score=30.56 Aligned_cols=48 Identities=21% Similarity=0.376 Sum_probs=30.6
Q ss_pred CCcccccccccccc-cCCccEEeC-CCCccChhhHHHHHh--cCCCCCCccc
Q 021283 229 GHDAECAICKENLL-VGDKMQELP-CKHTFHPPCLKPWLD--EHNSCPICRH 276 (314)
Q Consensus 229 ~~~~~C~ICLe~~~-~~~~v~~LP-CgH~FH~~CI~~WL~--~~~tCPvCR~ 276 (314)
..+..|.||...-. ..+.++.-- |.-.||..|+..-.. ..=.||.|+.
T Consensus 14 ~~~~~C~vC~~~~s~~~~~ll~CD~C~~~~H~~Cl~~~~vP~g~W~C~~C~~ 65 (71)
T 2ku3_A 14 DEDAVCSICMDGESQNSNVILFCDMCNLAVHQECYGVPYIPEGQWLCRHCLQ 65 (71)
T ss_dssp CSSCSCSSSCCCCCCSSSCEEECSSSCCEEEHHHHTCSSCCSSCCCCHHHHH
T ss_pred CCCCCCCCCCCCCCCCCCCEEECCCCCCccccccCCCCcCCCCCcCCccCcC
Confidence 34678999987631 223333333 889999999975332 1226888864
No 126
>2yw8_A RUN and FYVE domain-containing protein 1; structure genomics, structural genomics, NPPSFA; 3.00A {Homo sapiens} PDB: 2yqm_A
Probab=54.36 E-value=7.5 Score=28.83 Aligned_cols=34 Identities=18% Similarity=0.521 Sum_probs=25.4
Q ss_pred cccccccccccccCCccEEeC-CCCccChhhHHHH
Q 021283 231 DAECAICKENLLVGDKMQELP-CKHTFHPPCLKPW 264 (314)
Q Consensus 231 ~~~C~ICLe~~~~~~~v~~LP-CgH~FH~~CI~~W 264 (314)
...|.+|...|..-....... ||++||..|....
T Consensus 19 ~~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~~~ 53 (82)
T 2yw8_A 19 ATHCRQCEKEFSISRRKHHCRNCGHIFCNTCSSNE 53 (82)
T ss_dssp CCBCTTTCCBCBTTBCCEECTTTCCEECSGGGCEE
T ss_pred CCcccCcCCcccCccccccCCCCCCEEChHHhCCe
Confidence 458999999996544334444 9999999997654
No 127
>1wem_A Death associated transcription factor 1; structural genomics, PHD domain, death inducer- obliterator 1(DIO-1); NMR {Mus musculus} SCOP: g.50.1.2
Probab=51.15 E-value=2.8 Score=30.59 Aligned_cols=45 Identities=29% Similarity=0.501 Sum_probs=29.3
Q ss_pred ccccccccccccCCccEEe-CCCCccChhhHHHH------H---hcCCCCCCccccc
Q 021283 232 AECAICKENLLVGDKMQEL-PCKHTFHPPCLKPW------L---DEHNSCPICRHEL 278 (314)
Q Consensus 232 ~~C~ICLe~~~~~~~v~~L-PCgH~FH~~CI~~W------L---~~~~tCPvCR~~l 278 (314)
..| ||..... +..++.- .|...||..|+.-- | ...-.||.|+..-
T Consensus 17 ~~C-~C~~~~~-~~~MI~Cd~C~~WfH~~Cvgl~~~~~~~l~~~~~~~~C~~C~~~~ 71 (76)
T 1wem_A 17 LYC-ICRQPHN-NRFMICCDRCEEWFHGDCVGISEARGRLLERNGEDYICPNCTILS 71 (76)
T ss_dssp CCS-TTCCCCC-SSCEEECSSSCCEEEHHHHSCCHHHHHHHHHHTCCCCCHHHHHHS
T ss_pred CEE-ECCCccC-CCCEEEeCCCCCcEeCeEEccchhhhhhccCCCCeEECcCCcCcc
Confidence 456 8988764 2333333 39999999998421 1 2466899997643
No 128
>1wen_A Inhibitor of growth family, member 4; ING1-like protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.50.1.2 PDB: 1wes_A
Probab=51.09 E-value=6.3 Score=28.68 Aligned_cols=44 Identities=27% Similarity=0.618 Sum_probs=26.7
Q ss_pred cccccccccccccCCccEEeC--CC-CccChhhHHHHHhc----CCCCCCccccc
Q 021283 231 DAECAICKENLLVGDKMQELP--CK-HTFHPPCLKPWLDE----HNSCPICRHEL 278 (314)
Q Consensus 231 ~~~C~ICLe~~~~~~~v~~LP--Cg-H~FH~~CI~~WL~~----~~tCPvCR~~l 278 (314)
...| ||..... +..+.-=. |. ..||..|+. |.. .-.||.|+..-
T Consensus 16 ~~~C-~C~~~~~-g~MI~CD~~~C~~~wfH~~Cvg--l~~~p~g~w~Cp~C~~~~ 66 (71)
T 1wen_A 16 PTYC-LCHQVSY-GEMIGCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQES 66 (71)
T ss_dssp CCCS-TTCCCSC-SSEECCSCSSCSCCCEETTTTT--CSSCCSSCCCCTTTSSCS
T ss_pred CCEE-ECCCCCC-CCEeEeeCCCCCCccEecccCC--cCcCCCCCEECCCCCccc
Confidence 4567 8987542 33221112 55 689999997 442 23799997644
No 129
>3ql9_A Transcriptional regulator ATRX; zinc finger, transcription, lysine trimethylation, protein, histone-binding protein, transcription-structural complex; HET: M3L; 0.93A {Homo sapiens} PDB: 3qla_A* 3qlc_A 3qln_A 2jm1_A
Probab=50.82 E-value=14 Score=30.15 Aligned_cols=44 Identities=30% Similarity=0.666 Sum_probs=29.6
Q ss_pred CCcccccccccccccCCccEEe-CCCCccChhhHHHHH-----h------cCCCCCCccc
Q 021283 229 GHDAECAICKENLLVGDKMQEL-PCKHTFHPPCLKPWL-----D------EHNSCPICRH 276 (314)
Q Consensus 229 ~~~~~C~ICLe~~~~~~~v~~L-PCgH~FH~~CI~~WL-----~------~~~tCPvCR~ 276 (314)
+.+..|.||.+. ++ +..- .|-..||..||.+-+ . ..=.|++|+.
T Consensus 55 g~~~~C~vC~dG---G~-LlcCd~Cpr~Fc~~Cl~~~lg~~~l~~i~~~~~~W~C~~C~~ 110 (129)
T 3ql9_A 55 GMDEQCRWCAEG---GN-LICCDFCHNAFCKKCILRNLGRRELSTIMDENNQWYCYICHP 110 (129)
T ss_dssp SCBSSCTTTCCC---SE-EEECSSSSCEEEHHHHHHHTCHHHHHHHTCTTSCCCCTTTCC
T ss_pred CCCCcCeecCCC---Ce-eEecCCCchhhhHHHhCCCcchhHHHHhccCCCCeEcCCcCC
Confidence 345679999875 22 3222 388999999999752 1 1227999965
No 130
>3asl_A E3 ubiquitin-protein ligase UHRF1; histone reader module, epigenetic regulation, LI binding protein complex; 1.41A {Homo sapiens} PDB: 3sou_A 3sow_A* 3sox_A 3zvy_A 2lgg_A 2lgk_A* 2lgl_A 3t6r_A 3zvz_B
Probab=50.75 E-value=2.9 Score=30.34 Aligned_cols=43 Identities=35% Similarity=0.682 Sum_probs=26.2
Q ss_pred cccccccccccCCccEEeC-CCCccChhhHHHHHhc-----CCCCCCccc
Q 021283 233 ECAICKENLLVGDKMQELP-CKHTFHPPCLKPWLDE-----HNSCPICRH 276 (314)
Q Consensus 233 ~C~ICLe~~~~~~~v~~LP-CgH~FH~~CI~~WL~~-----~~tCPvCR~ 276 (314)
.|.||...-. +..+..-- |...||..|+.+=|.. .=.||.|+.
T Consensus 20 ~C~~C~~~~~-~~~ll~CD~C~~~yH~~Cl~Ppl~~~P~g~~W~C~~C~~ 68 (70)
T 3asl_A 20 ACHLCGGRQD-PDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRN 68 (70)
T ss_dssp SBTTTCCCSC-GGGEEECTTTCCEEEGGGSSSCCSSCCSSSCCCCTTTSC
T ss_pred CCcCCCCcCC-CCCEEEcCCCCCceecccCCCCcCCCCCCCCcCCcCccC
Confidence 4556664321 12233333 8899999999865542 226999975
No 131
>2oxj_A Hybrid alpha/beta peptide based on the GCN4-P1 Se heptad positions B and F substituted...; helix bundle, foldamer, unknown function; HET: B3K B3D B3E B3S B3Y B3X B3A BAL; 2.00A {Synthetic} PDB: 2oxk_A*
Probab=50.10 E-value=27 Score=21.87 Aligned_cols=29 Identities=28% Similarity=0.507 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhh
Q 021283 6 GLRQQLEELQKQLGKKLRFEDSVANINSLLRD 37 (314)
Q Consensus 6 ~~~~~l~~~~~~l~~k~~~~~a~~~~~~~~~~ 37 (314)
.|+.++++| |++|+..+.-|.+|+++|..
T Consensus 5 QLE~kVEeL---l~~n~~Le~eV~rLk~ll~~ 33 (34)
T 2oxj_A 5 QLEXKVXEL---LXKNXHLEXEVXRLKXLVXE 33 (34)
T ss_dssp HHHHHHHHH---HHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHH---HHhhhhHHHHHHHHHHHHhc
Confidence 455666655 67899999999999999864
No 132
>1wfk_A Zinc finger, FYVE domain containing 19; riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Mus musculus} SCOP: g.50.1.1
Probab=49.80 E-value=8.3 Score=29.14 Aligned_cols=49 Identities=20% Similarity=0.375 Sum_probs=31.6
Q ss_pred CcccccccccccccCCccEEeC-CCCccChhhHHHHHh-------cCCCCCCccccc
Q 021283 230 HDAECAICKENLLVGDKMQELP-CKHTFHPPCLKPWLD-------EHNSCPICRHEL 278 (314)
Q Consensus 230 ~~~~C~ICLe~~~~~~~v~~LP-CgH~FH~~CI~~WL~-------~~~tCPvCR~~l 278 (314)
+...|.+|...|..-....... ||++||..|....+. ....|-.|-..+
T Consensus 8 ~~~~C~~C~~~F~~~~RrHHCR~CG~vfC~~Cs~~~~~lp~~g~~~~RVC~~C~~~l 64 (88)
T 1wfk_A 8 MESRCYGCAVKFTLFKKEYGCKNCGRAFCNGCLSFSALVPRAGNTQQKVCKQCHTIL 64 (88)
T ss_dssp CCSBCTTTCCBCCSSSCEEECSSSCCEEETTTSCEEEEETTTTSEEEEECHHHHHHH
T ss_pred cCCCCcCcCCcccCccccccCCCCCCEEChhHcCCceeccccCCCcCEECHHHHHHH
Confidence 3458999999986543333344 999999999765422 123566665444
No 133
>1zbd_B Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: g.50.1.1
Probab=49.10 E-value=7.7 Score=31.79 Aligned_cols=33 Identities=24% Similarity=0.438 Sum_probs=23.1
Q ss_pred Ccccccccccccc-cCCccEE-eCCCCccChhhHH
Q 021283 230 HDAECAICKENLL-VGDKMQE-LPCKHTFHPPCLK 262 (314)
Q Consensus 230 ~~~~C~ICLe~~~-~~~~v~~-LPCgH~FH~~CI~ 262 (314)
.+..|.+|...|. ....-.. .-|.|.+|..|-.
T Consensus 54 ~~~~C~~C~~~~g~l~~~g~~C~~C~~~VC~~C~~ 88 (134)
T 1zbd_B 54 GVNRCILCGEQLGMLGSASVVCEDCKKNVCTKCGV 88 (134)
T ss_dssp SSSBCSSSCCBCSTTSCCEEECTTTCCEEETTSEE
T ss_pred CCccccccCCCcccccCCCCCCCCCCcccccccCC
Confidence 4678999999983 3333333 3499999988854
No 134
>1x4u_A Zinc finger, FYVE domain containing 27 isoform B; phosphoinositide binding, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=49.01 E-value=9.8 Score=28.27 Aligned_cols=34 Identities=21% Similarity=0.386 Sum_probs=24.5
Q ss_pred cccccccccccccCCccEEeC-CCCccChhhHHHH
Q 021283 231 DAECAICKENLLVGDKMQELP-CKHTFHPPCLKPW 264 (314)
Q Consensus 231 ~~~C~ICLe~~~~~~~v~~LP-CgH~FH~~CI~~W 264 (314)
...|.+|...|..-......- ||++||..|....
T Consensus 14 ~~~C~~C~~~F~~~~RrHHCR~CG~vfC~~Cs~~~ 48 (84)
T 1x4u_A 14 FGNCTGCSATFSVLKKRRSCSNCGNSFCSRCCSFK 48 (84)
T ss_dssp CSSCSSSCCCCCSSSCCEECSSSCCEECTTTSCEE
T ss_pred CCcCcCcCCccccchhhhhhcCCCcEEChhhcCCc
Confidence 468999999986443333344 9999999996543
No 135
>3c3g_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-beta) backbone; helix bundle, foldamer, unknown function protein; HET: HMR B3Q B3D B3E B3L BIL B3K BAL GOL; 1.80A {Synthetic} PDB: 3heu_A* 3het_A* 3hev_A* 3hew_A* 3hey_A* 3hex_A* 3c3h_A*
Probab=48.77 E-value=34 Score=21.28 Aligned_cols=29 Identities=28% Similarity=0.517 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhh
Q 021283 6 GLRQQLEELQKQLGKKLRFEDSVANINSLLRD 37 (314)
Q Consensus 6 ~~~~~l~~~~~~l~~k~~~~~a~~~~~~~~~~ 37 (314)
.|+..+++| |++|...+.-|.+|+++|..
T Consensus 4 QLEdKvEeL---l~~~~~Le~EV~RLk~lL~~ 32 (33)
T 3c3g_A 4 XIEXKLXEI---XSKXYHXENXLARIKXLLXE 32 (33)
T ss_dssp HHHHHHHHH---HHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHH---HHHhhHHHHHHHHHHHHHcc
Confidence 355555554 68999999999999999875
No 136
>1wee_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=48.62 E-value=2.1 Score=31.02 Aligned_cols=47 Identities=19% Similarity=0.315 Sum_probs=30.6
Q ss_pred cccccccccccccCCccEEeC-CCCccChhhHHHHH----hcCCCCCCccccc
Q 021283 231 DAECAICKENLLVGDKMQELP-CKHTFHPPCLKPWL----DEHNSCPICRHEL 278 (314)
Q Consensus 231 ~~~C~ICLe~~~~~~~v~~LP-CgH~FH~~CI~~WL----~~~~tCPvCR~~l 278 (314)
...| ||......+...+.-- |...||..|+.--- ...-.||.|+..-
T Consensus 16 ~~~C-~C~~~~~~g~~mI~Cd~C~~W~H~~Cvg~~~~~~~~~~~~C~~C~~~~ 67 (72)
T 1wee_A 16 KVDC-KCGTKDDDGERMLACDGCGVWHHTRCIGINNADALPSKFLCFRCIELS 67 (72)
T ss_dssp EECC-TTCCCSCCSSCEEECSSSCEEEETTTTTCCTTSCCCSCCCCHHHHHHC
T ss_pred ceEe-eCCCccCCCCcEEECCCCCCccCCeeeccCccccCCCcEECCCccCCC
Confidence 4568 7987764444444444 99999999975431 2345799997643
No 137
>2o35_A Hypothetical protein DUF1244; helix bundle, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.12A {Sinorhizobium meliloti} SCOP: a.293.1.1
Probab=48.17 E-value=6.7 Score=30.75 Aligned_cols=11 Identities=36% Similarity=0.984 Sum_probs=10.5
Q ss_pred cChhhHHHHHh
Q 021283 256 FHPPCLKPWLD 266 (314)
Q Consensus 256 FH~~CI~~WL~ 266 (314)
||+.|+..|+.
T Consensus 43 FCRNCLskWy~ 53 (105)
T 2o35_A 43 FCRNCLSNWYR 53 (105)
T ss_dssp CCHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999999987
No 138
>3fyb_A Protein of unknown function (DUF1244); hydrocar degrading, structural genomics, PSI-2; HET: PEG; 1.80A {Alcanivorax borkumensis SK2}
Probab=48.10 E-value=6.8 Score=30.68 Aligned_cols=11 Identities=45% Similarity=1.017 Sum_probs=10.5
Q ss_pred cChhhHHHHHh
Q 021283 256 FHPPCLKPWLD 266 (314)
Q Consensus 256 FH~~CI~~WL~ 266 (314)
||+.|+..|+.
T Consensus 42 FCRNCLskWy~ 52 (104)
T 3fyb_A 42 FCRNCLAKWLM 52 (104)
T ss_dssp CCHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999999987
No 139
>1z60_A TFIIH basal transcription factor complex P44 subunit; basic transcription factor, zinc binding protein, ring finger; NMR {Homo sapiens} SCOP: g.49.1.2
Probab=47.76 E-value=11 Score=26.61 Aligned_cols=42 Identities=26% Similarity=0.462 Sum_probs=28.2
Q ss_pred ccccccccccccCCccEEeC-CCCccChhhHHHHHhcCCCCCCc
Q 021283 232 AECAICKENLLVGDKMQELP-CKHTFHPPCLKPWLDEHNSCPIC 274 (314)
Q Consensus 232 ~~C~ICLe~~~~~~~v~~LP-CgH~FH~~CI~~WL~~~~tCPvC 274 (314)
..|-.|...|.. .....-| |++.||.+|=.---..=..||-|
T Consensus 16 ~~C~~C~~~~~~-~~~y~C~~C~~~FC~dCD~fiHe~Lh~CPgC 58 (59)
T 1z60_A 16 RFCYGCQGELKD-QHVYVCAVCQNVFCVDCDVFVHDSLHSCPGC 58 (59)
T ss_dssp CEETTTTEECTT-SEEECCTTTTCCBCHHHHHTTTTTSCSSSTT
T ss_pred CcccccCcccCC-CccEECCccCcCcccchhHHHHhhccCCcCC
Confidence 469999999842 2234556 99999999943322233479988
No 140
>3m48_A General control protein GCN4; leucine zipper, synthetic peptide, alpha helix, activa amino-acid biosynthesis, DNA-binding, nucleus; 1.45A {Synthetic} PDB: 3i1g_A 2ahp_A* 2o7h_A
Probab=43.67 E-value=35 Score=21.24 Aligned_cols=29 Identities=34% Similarity=0.587 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhh
Q 021283 6 GLRQQLEELQKQLGKKLRFEDSVANINSLLRD 37 (314)
Q Consensus 6 ~~~~~l~~~~~~l~~k~~~~~a~~~~~~~~~~ 37 (314)
.|+..+++| |++|...+.-|.+|+++|..
T Consensus 4 QLE~kVEeL---l~~n~~Le~EV~RLk~Ll~~ 32 (33)
T 3m48_A 4 QLEAKVEEL---LSKNWNLENEVARLKKLVGE 32 (33)
T ss_dssp HHHHHHHHH---HHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHH---HHHhHHHHHHHHHHHHHhhc
Confidence 466666666 57899999999999999864
No 141
>1wew_A DNA-binding family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=43.35 E-value=5 Score=29.51 Aligned_cols=47 Identities=26% Similarity=0.412 Sum_probs=29.3
Q ss_pred cccccccccccccCCccEEe--CCCCccChhhHHHHH---------hcCCCCCCccccc
Q 021283 231 DAECAICKENLLVGDKMQEL--PCKHTFHPPCLKPWL---------DEHNSCPICRHEL 278 (314)
Q Consensus 231 ~~~C~ICLe~~~~~~~v~~L--PCgH~FH~~CI~~WL---------~~~~tCPvCR~~l 278 (314)
...| ||-.....+..+.-= .|...||..|+.--- ...-.||.|+..-
T Consensus 16 ~~~C-iC~~~~~~g~MI~CD~~~C~~W~H~~CVgi~~~~~~~~~~~~~~~~C~~C~~~~ 73 (78)
T 1wew_A 16 KVRC-VCGNSLETDSMIQCEDPRCHVWQHVGCVILPDKPMDGNPPLPESFYCEICRLTS 73 (78)
T ss_dssp CCCC-SSCCCCCCSCEEECSSTTTCCEEEHHHHSCCCTTTCSCSCSCSSCCCHHHHHCC
T ss_pred CEEe-ECCCcCCCCCEEEECCccCCccccCEEEccccccccccccCCCCEECCCCCccc
Confidence 4567 788774333222222 599999999985311 1345799997644
No 142
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=41.63 E-value=30 Score=26.54 Aligned_cols=49 Identities=20% Similarity=0.489 Sum_probs=34.9
Q ss_pred cccccccccccccC---Cc-cEEeCCCCccChhhHHHHHh-cCCCCCCcccccC
Q 021283 231 DAECAICKENLLVG---DK-MQELPCKHTFHPPCLKPWLD-EHNSCPICRHELQ 279 (314)
Q Consensus 231 ~~~C~ICLe~~~~~---~~-v~~LPCgH~FH~~CI~~WL~-~~~tCPvCR~~l~ 279 (314)
...|-||-+.+... +. +...-|+--.|+.|..-=.+ .+..||-|+++..
T Consensus 16 ~qiCqiCGD~VG~~~~Ge~FVAC~eC~FPvCrpCyEYErkeG~q~CpqCktrYk 69 (93)
T 1weo_A 16 GQFCEICGDQIGLTVEGDLFVACNECGFPACRPCYEYERREGTQNCPQCKTRYK 69 (93)
T ss_dssp SCBCSSSCCBCCBCSSSSBCCSCSSSCCCCCHHHHHHHHHTSCSSCTTTCCCCC
T ss_pred CCccccccCccccCCCCCEEEeeeccCChhhHHHHHHHHhccCccccccCCccc
Confidence 46899999986432 21 22223777899999876544 5678999999885
No 143
>2d8v_A Zinc finger FYVE domain-containing protein 19; zfyve19, ZF- B_BOX, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.43.1.1
Probab=41.42 E-value=9 Score=27.79 Aligned_cols=31 Identities=19% Similarity=0.510 Sum_probs=24.2
Q ss_pred CcccccccccccccCCccEEeCC-CCccChhhHHHH
Q 021283 230 HDAECAICKENLLVGDKMQELPC-KHTFHPPCLKPW 264 (314)
Q Consensus 230 ~~~~C~ICLe~~~~~~~v~~LPC-gH~FH~~CI~~W 264 (314)
+..-|.||.++ -.++.+.| +-+||..|...-
T Consensus 7 e~pWC~ICneD----AtlrC~gCdgDLYC~rC~rE~ 38 (67)
T 2d8v_A 7 GLPWCCICNED----ATLRCAGCDGDLYCARCFREG 38 (67)
T ss_dssp CCSSCTTTCSC----CCEEETTTTSEEECSSHHHHH
T ss_pred CCCeeEEeCCC----CeEEecCCCCceehHHHHHHH
Confidence 35679999998 34677779 789999997763
No 144
>1kd8_B GABH BLL, GCN4 acid base heterodimer base-D12LA16L; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kd9_B 1kdd_B
Probab=40.93 E-value=50 Score=20.90 Aligned_cols=29 Identities=24% Similarity=0.365 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhh
Q 021283 6 GLRQQLEELQKQLGKKLRFEDSVANINSLLRD 37 (314)
Q Consensus 6 ~~~~~l~~~~~~l~~k~~~~~a~~~~~~~~~~ 37 (314)
.|+..+++| |++|...+.-|.+|++++..
T Consensus 5 QLE~KVEeL---l~~~~~Le~eV~RLk~ll~~ 33 (36)
T 1kd8_B 5 QLKAKVEEL---KSKLWHLKNKVARLKKKNAE 33 (36)
T ss_dssp HHHHHHHHH---HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHH---HHHhHHHHHHHHHHHHHhcc
Confidence 455555555 67899999999999999864
No 145
>1iml_A CRIP, cysteine rich intestinal protein; metal-binding protein, LIM domain protein; NMR {Rattus rattus} SCOP: g.39.1.3 g.39.1.3
Probab=39.86 E-value=11 Score=26.77 Aligned_cols=41 Identities=15% Similarity=0.184 Sum_probs=18.7
Q ss_pred cccccccccccccCCccEEeCCCCccCh-hhHHHHHhcCCCCCCcc
Q 021283 231 DAECAICKENLLVGDKMQELPCKHTFHP-PCLKPWLDEHNSCPICR 275 (314)
Q Consensus 231 ~~~C~ICLe~~~~~~~v~~LPCgH~FH~-~CI~~WL~~~~tCPvCR 275 (314)
-+.|..|...+..+. ....=+..||. .|...- ....|-.|.
T Consensus 27 CF~C~~C~~~L~~~~--~~~~~g~~yC~~~cy~~~--f~~~C~~C~ 68 (76)
T 1iml_A 27 CLKCEKCGKTLTSGG--HAEHEGKPYCNHPCYSAM--FGPKGFGRG 68 (76)
T ss_dssp TCBCTTTCCBCCTTT--EEEETTEEEETTTHHHHH--SSCCCSSCC
T ss_pred CCCccccCccCCCCc--eECcCCeEeeCHHHHHHH--hCccCCCcC
Confidence 455666666554321 11223455555 455442 233455554
No 146
>3o70_A PHD finger protein 13; PHF13, structural genomics consortium, SGC, structural genom type zinc finger, protein binding, zinc ION binding; 1.85A {Homo sapiens}
Probab=39.24 E-value=4 Score=29.44 Aligned_cols=45 Identities=29% Similarity=0.534 Sum_probs=28.9
Q ss_pred CcccccccccccccCCccEEeC-CCCccChhhHHHHHh---cCCCCCCccc
Q 021283 230 HDAECAICKENLLVGDKMQELP-CKHTFHPPCLKPWLD---EHNSCPICRH 276 (314)
Q Consensus 230 ~~~~C~ICLe~~~~~~~v~~LP-CgH~FH~~CI~~WL~---~~~tCPvCR~ 276 (314)
+...| ||..... +...+.-- |...||..|+.---. ..-.||.|+.
T Consensus 18 ~~~~C-iC~~~~~-~~~MIqCd~C~~WfH~~Cvgi~~~~~~~~~~C~~C~~ 66 (68)
T 3o70_A 18 GLVTC-FCMKPFA-GRPMIECNECHTWIHLSCAKIRKSNVPEVFVCQKCRD 66 (68)
T ss_dssp TCCCS-TTCCCCT-TCCEEECTTTCCEEETTTTTCCTTSCCSSCCCHHHHT
T ss_pred CceEe-ECCCcCC-CCCEEECCCCCccccccccCcCcccCCCcEECCCCCC
Confidence 34578 9987764 33344433 999999999854221 3347888864
No 147
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=38.95 E-value=3.5 Score=32.19 Aligned_cols=43 Identities=30% Similarity=0.598 Sum_probs=26.7
Q ss_pred cccccccccccCCccEEeC-CCCccChhhHHHHHhcC----CCCCCccc
Q 021283 233 ECAICKENLLVGDKMQELP-CKHTFHPPCLKPWLDEH----NSCPICRH 276 (314)
Q Consensus 233 ~C~ICLe~~~~~~~v~~LP-CgH~FH~~CI~~WL~~~----~tCPvCR~ 276 (314)
.|.||...-.. ..+..-. |...||..|+.+=|... -.||.|+.
T Consensus 56 ~C~~C~~~~~~-~~ll~Cd~C~~~yH~~Cl~ppl~~~P~g~W~C~~C~~ 103 (111)
T 2ysm_A 56 VCQNCKQSGED-SKMLVCDTCDKGYHTFCLQPVMKSVPTNGWKCKNCRI 103 (111)
T ss_dssp CCTTTCCCSCC-TTEEECSSSCCEEEGGGSSSCCSSCCSSCCCCHHHHC
T ss_pred cccccCccCCC-CCeeECCCCCcHHhHHhcCCccccCCCCCcCCcCCcC
Confidence 46666655321 2333333 89999999998755432 26888865
No 148
>4gne_A Histone-lysine N-methyltransferase NSD3; zinc finger, transcription, nuclear protein, transf nuclear protein complex; 1.47A {Homo sapiens} PDB: 4gnd_A 4gnf_A 4gng_A*
Probab=38.91 E-value=17 Score=28.55 Aligned_cols=46 Identities=24% Similarity=0.605 Sum_probs=29.9
Q ss_pred CCcccccccccccccCCccEEe---CCCCccChhhHHHHHhcCC----CCCCcccccCC
Q 021283 229 GHDAECAICKENLLVGDKMQEL---PCKHTFHPPCLKPWLDEHN----SCPICRHELQT 280 (314)
Q Consensus 229 ~~~~~C~ICLe~~~~~~~v~~L---PCgH~FH~~CI~~WL~~~~----tCPvCR~~l~~ 280 (314)
..+..|.||.+. ++ ++.- .|-..||..|+. |.... .||.|+..+..
T Consensus 13 ~~~~~C~~C~~~---G~-ll~CD~~~Cp~~fH~~Cl~--L~~~P~g~W~Cp~c~C~~C~ 65 (107)
T 4gne_A 13 MHEDYCFQCGDG---GE-LVMCDKKDCPKAYHLLCLN--LTQPPYGKWECPWHQCDECS 65 (107)
T ss_dssp SSCSSCTTTCCC---SE-EEECCSTTCCCEECTGGGT--CSSCCSSCCCCGGGBCTTTC
T ss_pred CCCCCCCcCCCC---Cc-EeEECCCCCCcccccccCc--CCcCCCCCEECCCCCCCcCC
Confidence 346789999842 23 3333 377899999987 54322 58887765543
No 149
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*
Probab=37.96 E-value=1.9 Score=34.16 Aligned_cols=45 Identities=29% Similarity=0.619 Sum_probs=28.1
Q ss_pred cccccccccccCCccEEe-CCCCccChhhHHHHHhcCC----CCCCccccc
Q 021283 233 ECAICKENLLVGDKMQEL-PCKHTFHPPCLKPWLDEHN----SCPICRHEL 278 (314)
Q Consensus 233 ~C~ICLe~~~~~~~v~~L-PCgH~FH~~CI~~WL~~~~----tCPvCR~~l 278 (314)
.|.||...-.. ..++.- .|...||..|+.+=|...+ .||.|+..+
T Consensus 60 ~C~~C~~~~~~-~~ll~Cd~C~~~yH~~Cl~ppl~~~P~g~W~C~~C~~~~ 109 (114)
T 2kwj_A 60 SCILCGTSEND-DQLLFCDDCDRGYHMYCLNPPVAEPPEGSWSCHLCWELL 109 (114)
T ss_dssp CCTTTTCCTTT-TTEEECSSSCCEEETTTSSSCCSSCCSSCCCCHHHHHHH
T ss_pred ccCcccccCCC-CceEEcCCCCccccccccCCCccCCCCCCeECccccchh
Confidence 57777665322 223333 3899999999986554322 599886543
No 150
>2gmg_A Hypothetical protein PF0610; winged-helix like protein with metal binding site, structura genomics, PSI, protein structure initiative; NMR {Pyrococcus furiosus} SCOP: a.4.5.82
Probab=37.93 E-value=6.5 Score=31.08 Aligned_cols=26 Identities=23% Similarity=0.539 Sum_probs=17.5
Q ss_pred EeCCCCccChhhHHHHHhcCCCCCCcccccC
Q 021283 249 ELPCKHTFHPPCLKPWLDEHNSCPICRHELQ 279 (314)
Q Consensus 249 ~LPCgH~FH~~CI~~WL~~~~tCPvCR~~l~ 279 (314)
...||+.|. .-+.....||.|+..-.
T Consensus 70 C~~CG~~F~-----~~~~kPsrCP~CkSe~I 95 (105)
T 2gmg_A 70 CRKCGFVFK-----AEINIPSRCPKCKSEWI 95 (105)
T ss_dssp BTTTCCBCC-----CCSSCCSSCSSSCCCCB
T ss_pred hhhCcCeec-----ccCCCCCCCcCCCCCcc
Confidence 355999992 22345678999998643
No 151
>2rsd_A E3 SUMO-protein ligase SIZ1; E3 SUMO ligase, plant homeodomain (PHD), histone binding; NMR {Oryza sativa japonica group}
Probab=36.95 E-value=2.1 Score=30.80 Aligned_cols=43 Identities=23% Similarity=0.488 Sum_probs=25.9
Q ss_pred ccccccccccccCCccEEe---CCCCccChhhHHHH---Hh-----cCCCCCCccc
Q 021283 232 AECAICKENLLVGDKMQEL---PCKHTFHPPCLKPW---LD-----EHNSCPICRH 276 (314)
Q Consensus 232 ~~C~ICLe~~~~~~~v~~L---PCgH~FH~~CI~~W---L~-----~~~tCPvCR~ 276 (314)
..| ||-.....+ ..+.. .|...||..|+.-- .. ..-.||.||.
T Consensus 11 v~C-~C~~~~~~g-~mI~CD~~~C~~W~H~~Cvgi~~~~~~~~~~p~~~~C~~Cr~ 64 (68)
T 2rsd_A 11 VRC-ICSSTMVND-SMIQCEDQRCQVWQHLNCVLIPDKPGESAEVPPVFYCELCRL 64 (68)
T ss_dssp ECC-TTCCCSCCS-CEEECSCTTTCEEEETTTSCCCSSTTSCCCCCSSCCCHHHHH
T ss_pred EEe-ECCCCcCCC-CEEEECCCCCCCeEchhhCCCCcccccccCCCCcEECcCccC
Confidence 456 797654433 34444 28889999997311 00 1346999974
No 152
>2cu8_A Cysteine-rich protein 2; CRP2, CRIP2, ESP1 protein, zinc-binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=36.74 E-value=16 Score=25.85 Aligned_cols=40 Identities=20% Similarity=0.583 Sum_probs=28.9
Q ss_pred cccccccccccccCCccEEeCCCCccChhhHHHHHhcCCCCCCcccccCC
Q 021283 231 DAECAICKENLLVGDKMQELPCKHTFHPPCLKPWLDEHNSCPICRHELQT 280 (314)
Q Consensus 231 ~~~C~ICLe~~~~~~~v~~LPCgH~FH~~CI~~WL~~~~tCPvCR~~l~~ 280 (314)
...|+.|-..+..++.+ ..-+..||..| ..|..|+.+|..
T Consensus 9 ~~~C~~C~~~I~~~~~v--~a~~~~~H~~C--------F~C~~C~~~L~~ 48 (76)
T 2cu8_A 9 ASKCPKCDKTVYFAEKV--SSLGKDWHKFC--------LKCERCSKTLTP 48 (76)
T ss_dssp CCBCTTTCCBCCTTTEE--EETTEEEETTT--------CBCSSSCCBCCT
T ss_pred CCCCcCCCCEeECCeEE--EECCeEeeCCC--------CCCCCCCCccCC
Confidence 35799999988655543 34578888877 458899888864
No 153
>2ct7_A Ring finger protein 31; IBR, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.4
Probab=35.14 E-value=5.9 Score=29.60 Aligned_cols=36 Identities=28% Similarity=0.684 Sum_probs=23.6
Q ss_pred ccccccccccc--CCccEEeC-CCCccChhhHHHHHhcC
Q 021283 233 ECAICKENLLV--GDKMQELP-CKHTFHPPCLKPWLDEH 268 (314)
Q Consensus 233 ~C~ICLe~~~~--~~~v~~LP-CgH~FH~~CI~~WL~~~ 268 (314)
-||-|-..+.. +...+..| |++.||..|-.+|=..|
T Consensus 27 wCP~C~~~~~~~~~~~~v~C~~C~~~FC~~C~~~w~~~H 65 (86)
T 2ct7_A 27 WCAQCSFGFIYEREQLEATCPQCHQTFCVRCKRQWEEQH 65 (86)
T ss_dssp CCSSSCCCEECCCSCSCEECTTTCCEECSSSCSBCCTTT
T ss_pred ECcCCCchheecCCCCceEeCCCCCccccccCCchhhcC
Confidence 37766554432 23356677 99999999988884333
No 154
>3c6w_A P28ING5, inhibitor of growth protein 5; chromatin, PHD, ING, epigenetics, alternative splicing, metal-binding, phosphoprotein, zinc; HET: M3L; 1.75A {Homo sapiens} PDB: 2pnx_A*
Probab=35.14 E-value=5.7 Score=27.79 Aligned_cols=42 Identities=26% Similarity=0.619 Sum_probs=25.2
Q ss_pred cccccccccccccCCccEEeC--CC-CccChhhHHHHHhc----CCCCCCccc
Q 021283 231 DAECAICKENLLVGDKMQELP--CK-HTFHPPCLKPWLDE----HNSCPICRH 276 (314)
Q Consensus 231 ~~~C~ICLe~~~~~~~v~~LP--Cg-H~FH~~CI~~WL~~----~~tCPvCR~ 276 (314)
..-| ||.... .+..+.-=. |. ..||..|+. |.. .-.||.|+.
T Consensus 9 ~~yC-~C~~~~-~g~mi~CD~~~C~~~wfH~~Cvg--l~~~p~~~w~Cp~C~~ 57 (59)
T 3c6w_A 9 PTYC-LCHQVS-YGEMIGCDNPDCPIEWFHFACVD--LTTKPKGKWFCPRCVQ 57 (59)
T ss_dssp CEET-TTTEEC-CSEEEECSCTTCSSCEEETGGGT--CSSCCSSCCCCHHHHC
T ss_pred CcEE-ECCCCC-CCCeeEeeCCCCCCCCEecccCC--cccCCCCCEECcCccC
Confidence 4456 998764 232222123 55 699999987 332 236998864
No 155
>2vnf_A ING 4, P29ING4, inhibitor of growth protein 4; acetylation, alternative splicing, anti-oncogene, cell cycle, coiled C nucleus, zinc, zinc-finger, ING4; HET: M3L; 1.76A {Homo sapiens} SCOP: g.50.1.2 PDB: 2k1j_A 2jmq_A 2qic_A*
Probab=33.64 E-value=6.1 Score=27.69 Aligned_cols=41 Identities=29% Similarity=0.699 Sum_probs=24.6
Q ss_pred cccccccccccccCCccEEe-C--CC-CccChhhHHHHHhc----CCCCCCccc
Q 021283 231 DAECAICKENLLVGDKMQEL-P--CK-HTFHPPCLKPWLDE----HNSCPICRH 276 (314)
Q Consensus 231 ~~~C~ICLe~~~~~~~v~~L-P--Cg-H~FH~~CI~~WL~~----~~tCPvCR~ 276 (314)
..-| ||.... .+. ++.- . |. ..||..|+. |.. .-.||.|+.
T Consensus 10 ~~~C-~C~~~~-~g~-mi~CD~cdC~~~wfH~~Cvg--l~~~p~g~w~C~~C~~ 58 (60)
T 2vnf_A 10 PTYC-LCHQVS-YGE-MIGCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQ 58 (60)
T ss_dssp CEET-TTTEEC-CSE-EEECSCTTCSSCEEETGGGT--CSSCCSSCCCCHHHHC
T ss_pred CCEE-ECCCcC-CCC-EEEeCCCCCCCceEehhcCC--CCcCCCCCEECcCccC
Confidence 3456 898763 222 2222 2 44 689999997 443 236998854
No 156
>1x63_A Skeletal muscle LIM-protein 1; LIM domain, four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=33.02 E-value=32 Score=24.44 Aligned_cols=41 Identities=22% Similarity=0.535 Sum_probs=29.5
Q ss_pred ccccccccccccCCccEEeCCCCccChhhHHHHHhcCCCCCCcccccCCC
Q 021283 232 AECAICKENLLVGDKMQELPCKHTFHPPCLKPWLDEHNSCPICRHELQTD 281 (314)
Q Consensus 232 ~~C~ICLe~~~~~~~v~~LPCgH~FH~~CI~~WL~~~~tCPvCR~~l~~~ 281 (314)
..|..|-..+..++.+ +..-+..||..| ..|-.|+.+|...
T Consensus 16 ~~C~~C~~~I~~~~~~-~~a~~~~~H~~C--------F~C~~C~~~L~~~ 56 (82)
T 1x63_A 16 PKCKGCFKAIVAGDQN-VEYKGTVWHKDC--------FTCSNCKQVIGTG 56 (82)
T ss_dssp CBCSSSCCBCCSSSCE-EECSSCEEETTT--------CCCSSSCCCCTTS
T ss_pred CcCccCCcccccCceE-EEECcccccccc--------CchhhCCCccCCC
Confidence 5799999888654443 334578899887 4688998888654
No 157
>2co8_A NEDD9 interacting protein with calponin homology and LIM domains; zinc finger protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=32.50 E-value=33 Score=24.78 Aligned_cols=42 Identities=31% Similarity=0.635 Sum_probs=29.7
Q ss_pred cccccccccccccCCccEEeCCCCccChhhHHHHHhcCCCCCCcccccCCCC
Q 021283 231 DAECAICKENLLVGDKMQELPCKHTFHPPCLKPWLDEHNSCPICRHELQTDD 282 (314)
Q Consensus 231 ~~~C~ICLe~~~~~~~v~~LPCgH~FH~~CI~~WL~~~~tCPvCR~~l~~~d 282 (314)
...|..|-..+...+.+. .-+..||..| ..|-.|+..|....
T Consensus 15 ~~~C~~C~~~I~~~e~v~--a~~~~wH~~C--------F~C~~C~~~L~~~~ 56 (82)
T 2co8_A 15 GDLCALCGEHLYVLERLC--VNGHFFHRSC--------FRCHTCEATLWPGG 56 (82)
T ss_dssp SCBCSSSCCBCCTTTBCC--BTTBCCBTTT--------CBCSSSCCBCCTTS
T ss_pred CCCCcccCCCcccceEEE--ECCCeeCCCc--------CEEcCCCCCcCCCc
Confidence 468999999875544432 3577899888 45888888775443
No 158
>2dj7_A Actin-binding LIM protein 3; LIM domain, Zn binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=32.22 E-value=25 Score=25.35 Aligned_cols=39 Identities=28% Similarity=0.640 Sum_probs=28.6
Q ss_pred cccccccccccccCCccEEeCCCCccChhhHHHHHhcCCCCCCcccccC
Q 021283 231 DAECAICKENLLVGDKMQELPCKHTFHPPCLKPWLDEHNSCPICRHELQ 279 (314)
Q Consensus 231 ~~~C~ICLe~~~~~~~v~~LPCgH~FH~~CI~~WL~~~~tCPvCR~~l~ 279 (314)
...|..|-..+..++.+. .-+..||..| ..|-.|+.+|.
T Consensus 15 ~~~C~~C~~~I~~~~~v~--a~~~~wH~~C--------F~C~~C~~~L~ 53 (80)
T 2dj7_A 15 PSHCAGCKEEIKHGQSLL--ALDKQWHVSC--------FKCQTCSVILT 53 (80)
T ss_dssp CSCCTTTCCCCSSSCCEE--ETTEEECTTT--------CBCSSSCCBCS
T ss_pred CCCCcCcCCeeCCCeEEE--ECCccccccc--------CCcCcCCCCcC
Confidence 458999999886555433 3577899887 46889988875
No 159
>3kqi_A GRC5, PHD finger protein 2; metal-binding, zinc-finger, histone-binding, NUC protein; HET: M3L; 1.78A {Homo sapiens} SCOP: g.50.1.2
Probab=31.68 E-value=11 Score=27.31 Aligned_cols=47 Identities=26% Similarity=0.459 Sum_probs=29.8
Q ss_pred cccccccccccccCCccEEeC-CCCccChhhHHHHHh-----cCCCCCCcccc
Q 021283 231 DAECAICKENLLVGDKMQELP-CKHTFHPPCLKPWLD-----EHNSCPICRHE 277 (314)
Q Consensus 231 ~~~C~ICLe~~~~~~~v~~LP-CgH~FH~~CI~~WL~-----~~~tCPvCR~~ 277 (314)
...--||...+..+...+.-- |.-.||..|+.---. ..-.||.|+..
T Consensus 9 ~~~yCiC~~~~~~~~~MI~Cd~C~~WfH~~Cvg~~~~~~~~~~~~~C~~C~~~ 61 (75)
T 3kqi_A 9 VPVYCVCRLPYDVTRFMIECDACKDWFHGSCVGVEEEEAPDIDIYHCPNCEKT 61 (75)
T ss_dssp CCEETTTTEECCTTSCEEECTTTCCEEEHHHHTCCTTTGGGBSSCCCHHHHHH
T ss_pred CeeEEECCCcCCCCCCEEEcCCCCCCEecccccccccccCCCCEEECCCCccc
Confidence 334448987764333444443 999999999853211 24579999764
No 160
>2wq1_A General control protein GCN4; TAA, nucleus, coiled coil, DNA-binding, protein export, ION coordination, polar core residues; 1.08A {Saccharomyces cerevisiae} PDB: 2wq0_A 2wq2_A 2wq3_A 2wpz_A 2wpy_A 1ij0_A 1ij1_A 1gcm_A 1rb5_A 1rb6_A 1rb1_A 1rb4_A 1swi_A 3k7z_A 1zii_A 1zij_A 1ij2_A 1ij3_A 1zil_A 1zim_A ...
Probab=31.53 E-value=90 Score=19.37 Aligned_cols=28 Identities=21% Similarity=0.342 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHhhhhhHHHHHHHHHHHHhh
Q 021283 7 LRQQLEELQKQLGKKLRFEDSVANINSLLRD 37 (314)
Q Consensus 7 ~~~~l~~~~~~l~~k~~~~~a~~~~~~~~~~ 37 (314)
|+..+++ .|++|...+.-|.+|+++|..
T Consensus 5 LEdKVEe---ll~~~~~le~EV~Rl~~ll~~ 32 (33)
T 2wq1_A 5 LEDKIEE---NTSKIYHNTNEIARNTKLVGE 32 (33)
T ss_dssp HHHHHHH---HHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHH---HHHhhHHHHHHHHHHHHHhcC
Confidence 4444444 468899999999999999864
No 161
>3kv4_A PHD finger protein 8; epigenetics, histone CODE, covalent histone modifications, jumonji demethylase, mental retardation, metal-binding, zinc; HET: M3L MLY OGA; 2.19A {Homo sapiens}
Probab=31.51 E-value=7.5 Score=38.12 Aligned_cols=52 Identities=21% Similarity=0.300 Sum_probs=33.3
Q ss_pred cccccccccccccCCccEEeC-CCCccChhhHHHH---H--hcCCCCCCcccccCCCC
Q 021283 231 DAECAICKENLLVGDKMQELP-CKHTFHPPCLKPW---L--DEHNSCPICRHELQTDD 282 (314)
Q Consensus 231 ~~~C~ICLe~~~~~~~v~~LP-CgH~FH~~CI~~W---L--~~~~tCPvCR~~l~~~d 282 (314)
...+.||...+..+...+..- |...||..|+.-- . ...-.||.|+....+.-
T Consensus 4 ~~~yCiC~~~~d~~~~MIqCD~C~~WfH~~CVgi~~~~~~~~~~y~C~~C~~~~~~~~ 61 (447)
T 3kv4_A 4 VPVYCLCRLPYDVTRFMIECDMCQDWFHGSCVGVEEEKAADIDLYHCPNCEVLHGPSI 61 (447)
T ss_dssp CCEETTTTEECCTTSCEEECTTTCCEEEHHHHTCCHHHHTTEEECCCHHHHHHHCCCE
T ss_pred CCeEEeCCCcCCCCCCeEEcCCCCcccccccCCcCcccccCCCEEECCCCccccCCch
Confidence 345668988764344444444 9999999998421 1 13458999987654443
No 162
>3twe_A Alpha4H; unknown function; HET: PGE; 1.36A {Synthetic} PDB: 3twf_A* 4g4m_A*
Probab=31.06 E-value=37 Score=19.67 Aligned_cols=14 Identities=50% Similarity=0.745 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHHhh
Q 021283 7 LRQQLEELQKQLGK 20 (314)
Q Consensus 7 ~~~~l~~~~~~l~~ 20 (314)
|-.+|++||.+|.|
T Consensus 6 lykeledlqerlrk 19 (27)
T 3twe_A 6 LYKELEDLQERLRK 19 (27)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 55566666665543
No 163
>3a1b_A DNA (cytosine-5)-methyltransferase 3A, histone H3; zinc-finger, histone binding, chromosomal protein, DNA damag repair, DNA-binding, methylation; HET: DNA; 2.29A {Homo sapiens} PDB: 3a1a_A*
Probab=30.82 E-value=28 Score=29.42 Aligned_cols=44 Identities=23% Similarity=0.548 Sum_probs=30.7
Q ss_pred CCcccccccccccccCCccEEe---CCCCccChhhHHHHHhcC----------CCCCCccc
Q 021283 229 GHDAECAICKENLLVGDKMQEL---PCKHTFHPPCLKPWLDEH----------NSCPICRH 276 (314)
Q Consensus 229 ~~~~~C~ICLe~~~~~~~v~~L---PCgH~FH~~CI~~WL~~~----------~tCPvCR~ 276 (314)
+.+..|.||-+. ..++.. .|...||..||..++... =.|=+|.-
T Consensus 77 G~~~yC~wC~~G----g~l~~Cdn~~C~r~FC~~CI~~nvG~~~~~~i~~~d~W~Cy~C~P 133 (159)
T 3a1b_A 77 GYQSYCTICCGG----REVLMCGNNNCCRCFCVECVDLLVGPGAAQAAIKEDPWNCYMCGH 133 (159)
T ss_dssp SSBSSCTTTSCC----SEEEECSSTTTCCEEEHHHHHHHTCTTHHHHHHTSSSCCCTTTCS
T ss_pred CCcceeeEecCC----CeEEeeCCCCCCCchhHHHHHHhcCHhHHHHHhccCCCEEEecCC
Confidence 346789999874 334443 388999999999986531 15888854
No 164
>2zet_C Melanophilin; complex, GTP-binding protein, GTPase, G-protein, RAB, RAB27B, effector, SLP homology domain, acetylation, lipoprotein, membrane; HET: GTP; 3.00A {Mus musculus}
Probab=30.28 E-value=22 Score=29.63 Aligned_cols=46 Identities=22% Similarity=0.452 Sum_probs=30.0
Q ss_pred Cccccccccccccc--CCccEEeCCCCccChhhHHHHHhcCC--CCCCccc
Q 021283 230 HDAECAICKENLLV--GDKMQELPCKHTFHPPCLKPWLDEHN--SCPICRH 276 (314)
Q Consensus 230 ~~~~C~ICLe~~~~--~~~v~~LPCgH~FH~~CI~~WL~~~~--tCPvCR~ 276 (314)
.+..|.+|...|.. +......-|.|.+|..|-. |+.... .|-+|+.
T Consensus 67 ~~~~C~~C~~~fg~l~~~g~~C~~C~~~VC~~C~~-~~~~~~~W~C~vC~k 116 (153)
T 2zet_C 67 NETHCARCLQPYRLLLNSRRQCLECSLFVCKSCSH-AHPEEQGWLCDPCHL 116 (153)
T ss_dssp GGTBCTTTCCBGGGCSSCCEECTTTCCEECGGGEE-CCSSSSSCEEHHHHH
T ss_pred CCccchhhcCccccccCCCCcCCCCCchhhccccc-ccCCCCcEeeHHHHH
Confidence 36799999998642 3334444599999999972 333222 4777753
No 165
>2l3k_A Rhombotin-2, linker, LIM domain-binding protein 1; LMO2(LIM2)-LDB1(LID), chimera, fusion protein, oncoprotein; NMR {Mus musculus} PDB: 2l6y_B 2l6z_C
Probab=30.04 E-value=28 Score=27.20 Aligned_cols=27 Identities=19% Similarity=0.412 Sum_probs=11.9
Q ss_pred cccccccccccCCccEEeCCCCccChhh
Q 021283 233 ECAICKENLLVGDKMQELPCKHTFHPPC 260 (314)
Q Consensus 233 ~C~ICLe~~~~~~~v~~LPCgH~FH~~C 260 (314)
.|..|-..+...+.++ ..-++.||..|
T Consensus 10 ~C~~C~~~I~~~e~~~-~a~~~~~H~~C 36 (123)
T 2l3k_A 10 LCASCDKRIRAYEMTM-RVKDKVYHLEC 36 (123)
T ss_dssp CCSSSSCCCCTTCCCC-CCSSCCCCTTT
T ss_pred cccCCCCeecCCceEE-EECCccccccc
Confidence 4555555553322221 11345555555
No 166
>1x4l_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=29.93 E-value=42 Score=23.21 Aligned_cols=39 Identities=26% Similarity=0.485 Sum_probs=27.0
Q ss_pred cccccccccccc--CCccEEeCCCCccChhhHHHHHhcCCCCCCcccccC
Q 021283 232 AECAICKENLLV--GDKMQELPCKHTFHPPCLKPWLDEHNSCPICRHELQ 279 (314)
Q Consensus 232 ~~C~ICLe~~~~--~~~v~~LPCgH~FH~~CI~~WL~~~~tCPvCR~~l~ 279 (314)
..|..|-..+.. ++.+ ...-+..||..| ..|-.|+.+|.
T Consensus 6 ~~C~~C~~~I~~~~~~~~-~~a~~~~wH~~C--------F~C~~C~~~L~ 46 (72)
T 1x4l_A 6 SGCAGCTNPISGLGGTKY-ISFEERQWHNDC--------FNCKKCSLSLV 46 (72)
T ss_dssp CSBTTTTBCCCCSSSCSC-EECSSCEECTTT--------CBCSSSCCBCT
T ss_pred CCCcCCCccccCCCCcce-EEECCcccCccc--------CEeccCCCcCC
Confidence 478888888754 2233 334678899887 36888888775
No 167
>1wyh_A SLIM 2, skeletal muscle LIM-protein 2; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=29.93 E-value=32 Score=23.75 Aligned_cols=41 Identities=24% Similarity=0.579 Sum_probs=28.0
Q ss_pred ccccccccccccCCccEEeCCCCccChhhHHHHHhcCCCCCCcccccCCC
Q 021283 232 AECAICKENLLVGDKMQELPCKHTFHPPCLKPWLDEHNSCPICRHELQTD 281 (314)
Q Consensus 232 ~~C~ICLe~~~~~~~v~~LPCgH~FH~~CI~~WL~~~~tCPvCR~~l~~~ 281 (314)
..|..|-..+...+. +...-+..||..| ..|-.|..+|...
T Consensus 6 ~~C~~C~~~I~~~~~-~~~a~~~~~H~~C--------F~C~~C~~~L~~~ 46 (72)
T 1wyh_A 6 SGCSACGETVMPGSR-KLEYGGQTWHEHC--------FLCSGCEQPLGSR 46 (72)
T ss_dssp CBCSSSCCBCCSSSC-EECSTTCCEETTT--------CBCTTTCCBTTTS
T ss_pred CCCccCCCccccCcc-EEEECccccCccc--------CeECCCCCcCCCC
Confidence 478889888754332 3334678888877 4588888887643
No 168
>1x4k_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=28.67 E-value=34 Score=23.57 Aligned_cols=41 Identities=22% Similarity=0.568 Sum_probs=27.4
Q ss_pred ccccccccccccCCccEEeCCCCccChhhHHHHHhcCCCCCCcccccCCC
Q 021283 232 AECAICKENLLVGDKMQELPCKHTFHPPCLKPWLDEHNSCPICRHELQTD 281 (314)
Q Consensus 232 ~~C~ICLe~~~~~~~v~~LPCgH~FH~~CI~~WL~~~~tCPvCR~~l~~~ 281 (314)
..|..|-..+...+.++ ..-+..||..| ..|-.|+.+|...
T Consensus 6 ~~C~~C~~~I~~~~~~~-~a~~~~~H~~C--------F~C~~C~~~L~~~ 46 (72)
T 1x4k_A 6 SGCQECKKTIMPGTRKM-EYKGSSWHETC--------FICHRCQQPIGTK 46 (72)
T ss_dssp CCBSSSCCCCCSSSCEE-EETTEEEETTT--------TCCSSSCCCCCSS
T ss_pred CCCccCCCcccCCceEE-EECcCeecccC--------CcccccCCccCCC
Confidence 47888888876543332 23567788777 4588888877543
No 169
>2jne_A Hypothetical protein YFGJ; zinc fingers, two zinc, structural genomics, PSI-2, protein structure initiative; NMR {Escherichia coli} SCOP: g.41.18.1
Probab=28.12 E-value=19 Score=28.13 Aligned_cols=41 Identities=24% Similarity=0.532 Sum_probs=25.2
Q ss_pred cccccccccccccCCccEEeCCCCccChhhHHHHHhcCCCCCCcccccC
Q 021283 231 DAECAICKENLLVGDKMQELPCKHTFHPPCLKPWLDEHNSCPICRHELQ 279 (314)
Q Consensus 231 ~~~C~ICLe~~~~~~~v~~LPCgH~FH~~CI~~WL~~~~tCPvCR~~l~ 279 (314)
+..||+|..++.... ++.+|..|-.. +.....||-|..+|.
T Consensus 32 ~~~CP~Cq~eL~~~g-------~~~hC~~C~~~-f~~~a~CPdC~q~Le 72 (101)
T 2jne_A 32 ELHCPQCQHVLDQDN-------GHARCRSCGEF-IEMKALCPDCHQPLQ 72 (101)
T ss_dssp CCBCSSSCSBEEEET-------TEEEETTTCCE-EEEEEECTTTCSBCE
T ss_pred cccCccCCCcceecC-------CEEECccccch-hhccccCcchhhHHH
Confidence 369999998875322 22234445332 345567999988773
No 170
>1g47_A Pinch protein; LIM domain, Zn finger, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=27.82 E-value=37 Score=23.77 Aligned_cols=42 Identities=21% Similarity=0.563 Sum_probs=29.1
Q ss_pred cccccccccccccCCccEEeCCCCccChhhHHHHHhcCCCCCCcccccCCC
Q 021283 231 DAECAICKENLLVGDKMQELPCKHTFHPPCLKPWLDEHNSCPICRHELQTD 281 (314)
Q Consensus 231 ~~~C~ICLe~~~~~~~v~~LPCgH~FH~~CI~~WL~~~~tCPvCR~~l~~~ 281 (314)
...|+.|-..+...+.++. .-+..||..| ..|-.|..+|...
T Consensus 11 ~~~C~~C~~~I~~~~~~~~-a~~~~~H~~C--------F~C~~C~~~L~~~ 52 (77)
T 1g47_A 11 SATCERCKGGFAPAEKIVN-SNGELYHEQC--------FVCAQCFQQFPEG 52 (77)
T ss_dssp CCBCSSSCCBCCSTTTCEE-ETTEEECTTT--------CCCTTTCCCCGGG
T ss_pred CCCchhcCCccCCCceEEE-eCccEecccc--------CeECCCCCCCCCC
Confidence 4689999998864444332 3577888877 4688888877543
No 171
>2r2v_A GCN4 leucine zipper; coiled coils, anti-parallel tetramer, protein design, de novo protein; HET: CIT; 1.90A {Saccharomyces cerevisiae} SCOP: h.1.3.1
Probab=27.28 E-value=1.2e+02 Score=18.99 Aligned_cols=23 Identities=17% Similarity=0.273 Sum_probs=18.9
Q ss_pred HHHHhhhhhHHHHHHHHHHHHhh
Q 021283 15 QKQLGKKLRFEDSVANINSLLRD 37 (314)
Q Consensus 15 ~~~l~~k~~~~~a~~~~~~~~~~ 37 (314)
..-+++|.+.+.-|.+|+.+|..
T Consensus 11 Eel~~~~~~l~nEv~Rl~~lLg~ 33 (34)
T 2r2v_A 11 EEVASKLYHNANELARVAKLLGE 33 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHhHHHHHHHHHHHHHhcC
Confidence 33468899999999999999865
No 172
>2jvx_A NF-kappa-B essential modulator; CCHC classical zinc finger, NEMO zinc finger, beta-BETA- alpha fold, coiled coil, cytoplasm, disease mutation; NMR {Synthetic} PDB: 2jvy_A
Probab=26.50 E-value=20 Score=21.55 Aligned_cols=13 Identities=23% Similarity=0.567 Sum_probs=9.3
Q ss_pred CCCCCcccccCCC
Q 021283 269 NSCPICRHELQTD 281 (314)
Q Consensus 269 ~tCPvCR~~l~~~ 281 (314)
..||+|+..++..
T Consensus 4 ~~CpvCk~q~Pd~ 16 (28)
T 2jvx_A 4 FCCPKCQYQAPDM 16 (28)
T ss_dssp EECTTSSCEESSH
T ss_pred ccCccccccCcCh
Confidence 3689998877643
No 173
>1zfo_A LAsp-1; LIM domain, zinc-finger, metal-binding protein; NMR {Sus scrofa} SCOP: g.39.1.4
Probab=26.21 E-value=23 Score=21.23 Aligned_cols=28 Identities=21% Similarity=0.545 Sum_probs=19.5
Q ss_pred ccccccccccccCCccEEeCCCCccChhhH
Q 021283 232 AECAICKENLLVGDKMQELPCKHTFHPPCL 261 (314)
Q Consensus 232 ~~C~ICLe~~~~~~~v~~LPCgH~FH~~CI 261 (314)
..|+.|-..+-..+.+. .=|..||..|.
T Consensus 4 ~~C~~C~k~Vy~~Ek~~--~~g~~~Hk~CF 31 (31)
T 1zfo_A 4 PNCARCGKIVYPTEKVN--CLDKFWHKACF 31 (31)
T ss_dssp CBCSSSCSBCCGGGCCC--SSSSCCCGGGC
T ss_pred CcCCccCCEEecceeEE--ECCeEecccCC
Confidence 47999988875544432 35788999883
No 174
>1x61_A Thyroid receptor interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=26.10 E-value=52 Score=22.62 Aligned_cols=39 Identities=26% Similarity=0.631 Sum_probs=23.6
Q ss_pred ccccccccccccCCccEEeCCCCccChhhHHHHHhcCCCCCCcccccC
Q 021283 232 AECAICKENLLVGDKMQELPCKHTFHPPCLKPWLDEHNSCPICRHELQ 279 (314)
Q Consensus 232 ~~C~ICLe~~~~~~~v~~LPCgH~FH~~CI~~WL~~~~tCPvCR~~l~ 279 (314)
..|..|-..+...+. +...-+..||..| ..|-.|..+|.
T Consensus 6 ~~C~~C~~~I~~~~~-~~~a~~~~~H~~C--------F~C~~C~~~L~ 44 (72)
T 1x61_A 6 SGCGGCGEDVVGDGA-GVVALDRVFHVGC--------FVCSTCRAQLR 44 (72)
T ss_dssp CCCSSSCSCCCSSSC-CEECSSSEECTTT--------CBCSSSCCBCT
T ss_pred CCCccCCCccCCCce-EEEECCCeEcccC--------CcccccCCcCC
Confidence 467777777643222 2233467777776 35777777773
No 175
>2pk7_A Uncharacterized protein; NESG, PLR1, putative tetraacyldisaccharide-1-P 4-kinase, Q4K structural genomics, PSI-2; 2.20A {Pseudomonas fluorescens} SCOP: b.171.1.1
Probab=25.57 E-value=18 Score=26.21 Aligned_cols=19 Identities=32% Similarity=0.620 Sum_probs=12.5
Q ss_pred HHHHhcCCCCCCcccccCC
Q 021283 262 KPWLDEHNSCPICRHELQT 280 (314)
Q Consensus 262 ~~WL~~~~tCPvCR~~l~~ 280 (314)
++||..--.||+|+.++..
T Consensus 2 d~~LLeiL~CP~ck~~L~~ 20 (69)
T 2pk7_A 2 DTKLLDILACPICKGPLKL 20 (69)
T ss_dssp -CCGGGTCCCTTTCCCCEE
T ss_pred ChHHHhheeCCCCCCcCeE
Confidence 3456666678888887753
No 176
>2pv0_B DNA (cytosine-5)-methyltransferase 3-like; DNMT3L, unmethylated H3K4, de novo DNA methylation, transferase regulator; HET: DNA; 3.30A {Homo sapiens} PDB: 2pvc_B*
Probab=25.17 E-value=37 Score=32.61 Aligned_cols=63 Identities=16% Similarity=0.367 Sum_probs=39.3
Q ss_pred CCcccccccccccccCCccEEe--CCCCccChhhHHHHHhc----------CCCCCCccccc-CCCCcchhhHHHHHHH
Q 021283 229 GHDAECAICKENLLVGDKMQEL--PCKHTFHPPCLKPWLDE----------HNSCPICRHEL-QTDDHAYESWKEREKE 294 (314)
Q Consensus 229 ~~~~~C~ICLe~~~~~~~v~~L--PCgH~FH~~CI~~WL~~----------~~tCPvCR~~l-~~~d~~~~~~~~r~~~ 294 (314)
+.+..|.||-+. ++.+..- .|...||..||..++.. .=.|=+|.-.- ..--..-.+|+.+-++
T Consensus 91 G~~~yCr~C~~G---g~l~~Cdn~~C~r~FC~~Ci~~n~g~~~~~~i~~~d~W~Cf~C~p~p~~~ll~~r~~w~~~~~~ 166 (386)
T 2pv0_B 91 GYQSYCSICCSG---ETLLICGNPDCTRCYCFECVDSLVGPGTSGKVHAMSNWVCYLCLPSSRSGLLQRRRKWRSQLKA 166 (386)
T ss_dssp SSBCSCTTTCCC---SSCEECCSTTCCCEECHHHHHHHTCTTHHHHHHHCSSCCCTTTSSCCEETTEEBCSSHHHHHHH
T ss_pred CCcccceEcCCC---CeEEEeCCCCCCcchHHHHHHHhcChhHHHHhhccCCceEEEcCCcchHhhhhhhhhHHHHHHH
Confidence 346778888865 2322222 59999999999999741 22688886432 2222233567777666
No 177
>2xjy_A Rhombotin-2; oncoprotein, T-cell leukemia, proto-oncogene, transcription, developmental protein; 2.40A {Homo sapiens} PDB: 2xjz_A
Probab=24.75 E-value=46 Score=25.84 Aligned_cols=50 Identities=10% Similarity=0.187 Sum_probs=24.6
Q ss_pred cccccccccccccCCccEEeCCCCccChhhHHHHHhcCCCCCCcccccCC
Q 021283 231 DAECAICKENLLVGDKMQELPCKHTFHPPCLKPWLDEHNSCPICRHELQT 280 (314)
Q Consensus 231 ~~~C~ICLe~~~~~~~v~~LPCgH~FH~~CI~~WL~~~~tCPvCR~~l~~ 280 (314)
-+.|..|-..+..........=+..||..|...-+.....|..|..+|..
T Consensus 29 CF~C~~C~~~L~~~~~~~~~~~g~~yC~~~y~~~~~~~~~C~~C~~~I~~ 78 (131)
T 2xjy_A 29 CLSCDLCGCRLGEVGRRLYYKLGRKLCRRDYLRLFGQDGLCASCDKRIRA 78 (131)
T ss_dssp TCBCTTTCCBCSSTTCCEEEETTEEECHHHHHHHHCCCEECTTTCCEECT
T ss_pred HcccCcCCCccccCCCeEEEECCEEeecCchhhhCCCccChhhcCCccCc
Confidence 45666666665321111122234556666655544333356666666643
No 178
>1x64_A Alpha-actinin-2 associated LIM protein; LIM domain, PDZ and LIM domain 3, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=24.49 E-value=68 Score=23.23 Aligned_cols=40 Identities=20% Similarity=0.414 Sum_probs=29.5
Q ss_pred cccccccccccccCCccEEeCCCCccChhhHHHHHhcCCCCCCcccccCCC
Q 021283 231 DAECAICKENLLVGDKMQELPCKHTFHPPCLKPWLDEHNSCPICRHELQTD 281 (314)
Q Consensus 231 ~~~C~ICLe~~~~~~~v~~LPCgH~FH~~CI~~WL~~~~tCPvCR~~l~~~ 281 (314)
...|..|-..+.. . ....-+..||..| ..|-.|...|...
T Consensus 25 ~~~C~~C~~~I~~-~--~~~a~~~~~H~~C--------F~C~~C~~~L~~~ 64 (89)
T 1x64_A 25 MPLCDKCGSGIVG-A--VVKARDKYRHPEC--------FVCADCNLNLKQK 64 (89)
T ss_dssp CCBCTTTCCBCCS-C--CEESSSCEECTTT--------CCCSSSCCCTTTS
T ss_pred CCCcccCCCEecc-c--EEEECCceECccC--------CEecCCCCCCCCC
Confidence 4689999998753 2 2344778999988 4699999888643
No 179
>1m3v_A FLIN4, fusion of the LIM interacting domain of LDB1 and the N-terminal LIM domain of LMO4...; fusion protein, LMO proteins, metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=24.07 E-value=49 Score=25.69 Aligned_cols=52 Identities=10% Similarity=-0.020 Sum_probs=35.7
Q ss_pred cccccccccccccCCccEEeCCCCccChhhHHHHHhcCCCCCCcccccCCCC
Q 021283 231 DAECAICKENLLVGDKMQELPCKHTFHPPCLKPWLDEHNSCPICRHELQTDD 282 (314)
Q Consensus 231 ~~~C~ICLe~~~~~~~v~~LPCgH~FH~~CI~~WL~~~~tCPvCR~~l~~~d 282 (314)
-+.|..|-..+..........=+..||..|...-+.....|-.|..+|....
T Consensus 32 CF~C~~C~~~L~~~~~~~~~~~g~~yC~~cy~~~f~~~~~C~~C~~~I~~~~ 83 (122)
T 1m3v_A 32 CLKCSSCQAQLGDIGTSSYTKSGMILCRNDYIRLFGNSGAGGSGGHMGSGGD 83 (122)
T ss_dssp HHCCSSSCCCTTTSEECCEEETTEEECHHHHHHHHCCCCSSSCSSCCSCCEE
T ss_pred CCCcCCCCCcccccCCeEEEECCeeecHHHHHHHcCCCCccccCCCCcCchh
Confidence 4688888888742111222335678999998887766558999999887543
No 180
>1nyp_A Pinch protein; LIM domain, protein recognition, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 PDB: 1u5s_B
Probab=23.66 E-value=47 Score=22.51 Aligned_cols=38 Identities=16% Similarity=0.389 Sum_probs=27.4
Q ss_pred ccccccccccccCCccEEeCCCCccChhhHHHHHhcCCCCCCcccccCC
Q 021283 232 AECAICKENLLVGDKMQELPCKHTFHPPCLKPWLDEHNSCPICRHELQT 280 (314)
Q Consensus 232 ~~C~ICLe~~~~~~~v~~LPCgH~FH~~CI~~WL~~~~tCPvCR~~l~~ 280 (314)
..|+.|-..+. ++ ....-+..||..| ..|-.|+.+|..
T Consensus 6 ~~C~~C~~~I~-~~--~~~a~~~~~H~~C--------F~C~~C~~~L~~ 43 (66)
T 1nyp_A 6 PICGACRRPIE-GR--VVNAMGKQWHVEH--------FVCAKCEKPFLG 43 (66)
T ss_dssp CEETTTTEECC-SC--EECCTTSBEETTT--------CBCTTTCCBCSS
T ss_pred CCCcccCCEec-ce--EEEECccccccCc--------CEECCCCCCCCC
Confidence 47999988875 33 3344678889877 468889888764
No 181
>2dar_A PDZ and LIM domain protein 5; enigma homolog protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=23.30 E-value=44 Score=24.34 Aligned_cols=39 Identities=21% Similarity=0.527 Sum_probs=28.1
Q ss_pred cccccccccccccCCccEEeCCCCccChhhHHHHHhcCCCCCCcccccCC
Q 021283 231 DAECAICKENLLVGDKMQELPCKHTFHPPCLKPWLDEHNSCPICRHELQT 280 (314)
Q Consensus 231 ~~~C~ICLe~~~~~~~v~~LPCgH~FH~~CI~~WL~~~~tCPvCR~~l~~ 280 (314)
...|..|-..+. +. ....-+..||..| ..|-.|+.+|..
T Consensus 25 ~~~C~~C~~~I~-~~--~v~a~~~~~H~~C--------F~C~~C~~~L~~ 63 (90)
T 2dar_A 25 TPMCAHCNQVIR-GP--FLVALGKSWHPEE--------FNCAHCKNTMAY 63 (90)
T ss_dssp CCBBSSSCCBCC-SC--EEEETTEEECTTT--------CBCSSSCCBCSS
T ss_pred CCCCccCCCEec-ce--EEEECCccccccC--------CccCCCCCCCCC
Confidence 457999998873 23 2334688899887 468899888864
No 182
>3mjh_B Early endosome antigen 1; protein-zinc finger complex, beta BETA alpha fold, beta HAIR RAB5A GTPase, EEA1, protein transport; HET: GTP; 2.03A {Homo sapiens}
Probab=23.21 E-value=18 Score=22.71 Aligned_cols=10 Identities=30% Similarity=0.703 Sum_probs=5.7
Q ss_pred cccccccccc
Q 021283 232 AECAICKENL 241 (314)
Q Consensus 232 ~~C~ICLe~~ 241 (314)
+.||||+..+
T Consensus 6 FiCP~C~~~l 15 (34)
T 3mjh_B 6 FICPQCMKSL 15 (34)
T ss_dssp EECTTTCCEE
T ss_pred cCCcHHHHHc
Confidence 4566665555
No 183
>2jny_A Uncharacterized BCR; structure, CGR1, NESG, structural genomics, PSI-2, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: b.171.1.1
Probab=23.19 E-value=16 Score=26.39 Aligned_cols=19 Identities=32% Similarity=0.410 Sum_probs=13.8
Q ss_pred HHHHhcCCCCCCcccccCC
Q 021283 262 KPWLDEHNSCPICRHELQT 280 (314)
Q Consensus 262 ~~WL~~~~tCPvCR~~l~~ 280 (314)
++||..--.||+|+.++..
T Consensus 4 d~~LLeiL~CP~ck~~L~~ 22 (67)
T 2jny_A 4 DPQLLEVLACPKDKGPLRY 22 (67)
T ss_dssp CGGGTCCCBCTTTCCBCEE
T ss_pred CHHHHHHhCCCCCCCcCeE
Confidence 4566666789999987753
No 184
>1x68_A FHL5 protein; four-and-A-half LIM protein 5, zinc finger domain, AN actin- interacting protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=22.47 E-value=50 Score=23.15 Aligned_cols=40 Identities=18% Similarity=0.364 Sum_probs=25.8
Q ss_pred cccccccccccc-CCccEEeCCCCccChhhHHHHHhcCCCCCCcccccC
Q 021283 232 AECAICKENLLV-GDKMQELPCKHTFHPPCLKPWLDEHNSCPICRHELQ 279 (314)
Q Consensus 232 ~~C~ICLe~~~~-~~~v~~LPCgH~FH~~CI~~WL~~~~tCPvCR~~l~ 279 (314)
..|+.|-..+.. ++......-+..||..| ..|-.|+.+|.
T Consensus 6 ~~C~~C~~~I~~~g~~~~~~a~~~~wH~~C--------F~C~~C~~~L~ 46 (76)
T 1x68_A 6 SGCVACSKPISGLTGAKFICFQDSQWHSEC--------FNCGKCSVSLV 46 (76)
T ss_dssp CCCTTTCCCCCTTTTCCEEEETTEEEEGGG--------CBCTTTCCBCS
T ss_pred CCCccCCCcccCCCCceeEEECCcccCccc--------CChhhCCCcCC
Confidence 478888888753 11122333677888887 35888877775
No 185
>1x62_A C-terminal LIM domain protein 1; PDZ and LIM domain protein 1, LIM domain protein CLP-36, contractIle protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=22.45 E-value=53 Score=23.25 Aligned_cols=38 Identities=21% Similarity=0.401 Sum_probs=27.8
Q ss_pred cccccccccccccCCccEEeCCCCccChhhHHHHHhcCCCCCCcccccC
Q 021283 231 DAECAICKENLLVGDKMQELPCKHTFHPPCLKPWLDEHNSCPICRHELQ 279 (314)
Q Consensus 231 ~~~C~ICLe~~~~~~~v~~LPCgH~FH~~CI~~WL~~~~tCPvCR~~l~ 279 (314)
...|..|-..+.. . ....-+..||..| ..|-.|+..|.
T Consensus 15 ~~~C~~C~~~I~~-~--~~~a~~~~~H~~C--------F~C~~C~~~L~ 52 (79)
T 1x62_A 15 LPMCDKCGTGIVG-V--FVKLRDRHRHPEC--------YVCTDCGTNLK 52 (79)
T ss_dssp CCCCSSSCCCCCS-S--CEECSSCEECTTT--------TSCSSSCCCHH
T ss_pred CCccccCCCCccC-c--EEEECcceeCcCc--------CeeCCCCCCCC
Confidence 4589999998753 2 3344688999888 36888888774
No 186
>2d8y_A Eplin protein; LIM domain, epithelial protein LOST in neoplasm, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=21.98 E-value=63 Score=23.53 Aligned_cols=40 Identities=23% Similarity=0.624 Sum_probs=25.2
Q ss_pred cccccccccccccCCccEEeCCCCccChhhHHHHHhcCCCCCCcccccCC
Q 021283 231 DAECAICKENLLVGDKMQELPCKHTFHPPCLKPWLDEHNSCPICRHELQT 280 (314)
Q Consensus 231 ~~~C~ICLe~~~~~~~v~~LPCgH~FH~~CI~~WL~~~~tCPvCR~~l~~ 280 (314)
...|..|-..+...+. +..-+..||..| ..|-.|..+|..
T Consensus 15 ~~~C~~C~~~I~~~~~--v~a~~~~~H~~C--------F~C~~C~~~L~~ 54 (91)
T 2d8y_A 15 RETCVECQKTVYPMER--LLANQQVFHISC--------FRCSYCNNKLSL 54 (91)
T ss_dssp SCBCTTTCCBCCTTSE--EECSSSEEETTT--------CBCTTTCCBCCT
T ss_pred CCcCccCCCccCCcee--EEECCCEECCCC--------CeeCCCCCCCCC
Confidence 3578888887754443 234667778777 347777766654
No 187
>2fiy_A Protein FDHE homolog; FDHE protein, structural genomics, P protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pseudomonas aeruginosa} SCOP: e.59.1.1
Probab=21.90 E-value=8.3 Score=35.95 Aligned_cols=46 Identities=17% Similarity=0.360 Sum_probs=28.7
Q ss_pred CcccccccccccccCCccEEe---CCC--CccChhhHHHHHhcCCCCCCcccc
Q 021283 230 HDAECAICKENLLVGDKMQEL---PCK--HTFHPPCLKPWLDEHNSCPICRHE 277 (314)
Q Consensus 230 ~~~~C~ICLe~~~~~~~v~~L---PCg--H~FH~~CI~~WL~~~~tCPvCR~~ 277 (314)
....||||-..-... ++.. .=| +.+|..|-..|--....||.|-..
T Consensus 181 ~~~~CPvCGs~P~~s--~l~~~g~~~G~R~l~Cs~C~t~W~~~R~~C~~Cg~~ 231 (309)
T 2fiy_A 181 SRTLCPACGSPPMAG--MIRQGGKETGLRYLSCSLCACEWHYVRIKCSHCEES 231 (309)
T ss_dssp TCSSCTTTCCCEEEE--EEEC----CCEEEEEETTTCCEEECCTTSCSSSCCC
T ss_pred cCCCCCCCCCcCcee--EEeecCCCCCcEEEEeCCCCCEEeecCcCCcCCCCC
Confidence 356899997654221 1110 112 556777777887777789999664
No 188
>1wig_A KIAA1808 protein; LIM domain, zinc finger, metal-binding protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=21.00 E-value=64 Score=22.55 Aligned_cols=37 Identities=19% Similarity=0.539 Sum_probs=23.0
Q ss_pred ccccccccccccCCccEEeCCCCccChhhHHHHHhcCCCCCCcccccC
Q 021283 232 AECAICKENLLVGDKMQELPCKHTFHPPCLKPWLDEHNSCPICRHELQ 279 (314)
Q Consensus 232 ~~C~ICLe~~~~~~~v~~LPCgH~FH~~CI~~WL~~~~tCPvCR~~l~ 279 (314)
..|+-|-..+.. . .+..-+..||..| ..|-.|..+|.
T Consensus 6 ~~C~~C~~~I~~-~--~v~a~~~~wH~~C--------F~C~~C~~~L~ 42 (73)
T 1wig_A 6 SGCDSCEKYITG-R--VLEAGEKHYHPSC--------ALCVRCGQMFA 42 (73)
T ss_dssp CSCSSSCCCCSS-C--CBCCSSCCBCTTT--------SCCSSSCCCCC
T ss_pred CCcccCCCEecC-e--eEEeCCCCCCCCc--------CEeCCCCCCCC
Confidence 367777777642 2 2234567788777 35777777765
No 189
>1a7i_A QCRP2 (LIM1); LIM domain containing proteins, metal-binding protein, zinc finger; NMR {Coturnix japonica} SCOP: g.39.1.3 g.39.1.3 PDB: 2o10_A
Probab=20.54 E-value=29 Score=24.77 Aligned_cols=41 Identities=22% Similarity=0.574 Sum_probs=26.0
Q ss_pred cccccccccccccCCccEEeCCCCccChhhHHHHHhcCCCCCCcccccCCC
Q 021283 231 DAECAICKENLLVGDKMQELPCKHTFHPPCLKPWLDEHNSCPICRHELQTD 281 (314)
Q Consensus 231 ~~~C~ICLe~~~~~~~v~~LPCgH~FH~~CI~~WL~~~~tCPvCR~~l~~~ 281 (314)
...|..|-..+..++. ...-+..||..| ..|-.|+.+|...
T Consensus 7 ~~~C~~C~~~I~~~~~--~~a~~~~~H~~C--------F~C~~C~~~L~~~ 47 (81)
T 1a7i_A 7 GNKCGACGRTVYHAEE--VQCDGRSFHRCC--------FLCMVCRKNLDST 47 (81)
T ss_dssp -CBCSSSCCBCSSTTE--EEETTEEEESSS--------EECSSSCCEECSS
T ss_pred CCcCcCcCccccCcee--EEeCCccccccc--------CccCCCCCCCCCC
Confidence 3578888888754443 233567788777 3477787777543
Done!