BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 021284
(314 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2ARZ|A Chain A, Crystal Structure Of Protein Of Unknown Function From
Pseudomonas Aeruginosa
pdb|2ARZ|B Chain B, Crystal Structure Of Protein Of Unknown Function From
Pseudomonas Aeruginosa
Length = 247
Score = 85.9 bits (211), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 64/205 (31%), Positives = 108/205 (52%), Gaps = 18/205 (8%)
Query: 93 RTVLDRSVRGMLSTFSQKYEGYPSGSMVDFACDADGTPILAVSSLAVHTKDLLANPKCSL 152
R +L + R +LST S+K+ G+P GS+V + DA+G P++ +S +A HT +L A+P+CS+
Sbjct: 13 RELLLKEYRAVLSTHSKKWPGFPFGSVVPYCLDAEGRPLILISRIAQHTHNLQADPRCSM 72
Query: 153 LVA-RDPEDRTDL-VITLHGDATSVAEKDKAAIRAVYLAKHP-NAFWVDFGDFQFMRIEP 209
LV R ED + +TL +A +AE++ AA Y P +A + DF F ++P
Sbjct: 73 LVGERGAEDIQAVGRLTLLAEARQLAEEEVAAAAERYYRYFPESADYHRVHDFDFWVLQP 132
Query: 210 KAVRYVSGVATALLGSGEFSKEEYQAANVDPIA-----QFSKPVASHMNRDHAEDTRIIV 264
R++ G F + AA P+A + + + HMN DHA V
Sbjct: 133 VQWRFIGG----------FGAIHWLAAERVPLANPFAGEAERGMVEHMNSDHAAAIAHYV 182
Query: 265 QHSTSIPVASAYMLDLDSLGFNVKV 289
+ + A+A + +D+ GF++++
Sbjct: 183 ELAGLPAHAAAQLAGIDTEGFHLRI 207
>pdb|1VL7|A Chain A, Crystal Structure Of A Putative Heme Oxygenase (Alr5027)
From Nostoc Sp. Pcc 7120 At 1.50 A Resolution
pdb|1VL7|B Chain B, Crystal Structure Of A Putative Heme Oxygenase (Alr5027)
From Nostoc Sp. Pcc 7120 At 1.50 A Resolution
Length = 157
Score = 44.7 bits (104), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 39/129 (30%), Positives = 61/129 (47%), Gaps = 22/129 (17%)
Query: 103 MLSTFSQKYEGYPSGSMVDFACDADGTPILAVSSLAVHTKDLLANPKCSLLVARDPEDRT 162
++ST S+ +G P+GS F D + VS LAVHTK++ ANP ++L D E +T
Sbjct: 34 IISTISE--QGIPNGSYAPFVIDDAKNIYIYVSGLAVHTKNIEANPLVNVLFV-DDEAKT 90
Query: 163 DLVIT---LHGDAT-SVAEKDKAAIRAVYLAKHPNAFWVDFG----------DFQFMRIE 208
+ + L D T ++ E++ V + F FG DF+ ++
Sbjct: 91 NQIFARRRLSFDCTATLIERESQKWNQVV-----DQFQERFGQIIEVLRGLADFRIFQLT 145
Query: 209 PKAVRYVSG 217
PK R+V G
Sbjct: 146 PKEGRFVIG 154
>pdb|3DNH|A Chain A, The Crystal Structure Of The Protein Atu2129 (Unknown
Function) From Agrobacterium Tumefaciens Str. C58
pdb|3DNH|B Chain B, The Crystal Structure Of The Protein Atu2129 (Unknown
Function) From Agrobacterium Tumefaciens Str. C58
Length = 258
Score = 42.0 bits (97), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 35/140 (25%), Positives = 62/140 (44%), Gaps = 11/140 (7%)
Query: 88 PLEEIRT---VLDRSVRGMLSTFSQKYEGYPSGSMVDFACDADGTPILAVSSLAVHTKDL 144
P E +R VL S L+T GYP + + + DGTP + L +H ++
Sbjct: 25 PFEAVRVARDVLHTSRTAALATL-DPVSGYPYTTATNIGIEPDGTPFFFAAGLTLHARNX 83
Query: 145 LANPKCSLLVARDPEDRTDLV----ITLHGDATSVAEKDKAAIRAVYLAKHPNA-FWVDF 199
+ + S+ +A P + D + +TL G A + + A Y+A++P A ++
Sbjct: 84 ETDARISVTLA--PFGKGDALTLPRLTLVGRADRIGPDEVPLAIARYIARYPKAKLYLSL 141
Query: 200 GDFQFMRIEPKAVRYVSGVA 219
D + R+ + V+ G A
Sbjct: 142 PDTRLYRLRTEGVQINGGPA 161
>pdb|1SA3|A Chain A, An Asymmetric Complex Of Restriction Endonuclease Mspi On
Its Palindromic Dna Recognition Site
pdb|1SA3|B Chain B, An Asymmetric Complex Of Restriction Endonuclease Mspi On
Its Palindromic Dna Recognition Site
pdb|1YFI|A Chain A, Crystal Structure Of Restriction Endonuclease Mspi In
Complex With Its Cognate Dna In P212121 Space Group
pdb|1YFI|B Chain B, Crystal Structure Of Restriction Endonuclease Mspi In
Complex With Its Cognate Dna In P212121 Space Group
Length = 262
Score = 34.7 bits (78), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 26/104 (25%), Positives = 54/104 (51%), Gaps = 13/104 (12%)
Query: 21 TPHSSPMLRFC-HSTTRLSSFTPLSF--TLRRQLPMASFSAQAVSTGDVKSDANVFELIQ 77
+P + +RF H+ + S PL+ + ++++ +A + + + TG SD + ELI+
Sbjct: 95 SPKTDATIRFTFHNQS--SRLVPLNIKHSSKKKVSIAEYDVETICTGVGISDGELKELIR 152
Query: 78 KHQ--EAAARLPPLEEIRTV------LDRSVRGMLSTFSQKYEG 113
KHQ ++A P+++ R +R +R ++ ++K EG
Sbjct: 153 KHQNDQSAKLFTPVQKQRLTELLEPYRERFIRWCVTLRAEKSEG 196
>pdb|1U8S|A Chain A, Crystal Structure Of Putative Glycine Cleavage System
Transcriptional Repressor
pdb|1U8S|B Chain B, Crystal Structure Of Putative Glycine Cleavage System
Transcriptional Repressor
Length = 192
Score = 33.5 bits (75), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 37/74 (50%), Gaps = 7/74 (9%)
Query: 45 FTLRRQLPMASFSAQAVSTGDVKSDANVFEL-IQKHQEAAARLPPLEE----IRTVLDRS 99
F +RQ+ MAS SAQ +S + S+ N F + I ++ L L+E + T LD
Sbjct: 113 FFAQRQIGMASLSAQTISKDKLHSEQNQFHIAISARVDSGCNLMQLQEEFDALCTALD-- 170
Query: 100 VRGMLSTFSQKYEG 113
V+G L+ EG
Sbjct: 171 VQGSLNFIKNSQEG 184
>pdb|2YU1|A Chain A, Crystal Structure Of Hjhdm1a Complexed With
A-ketoglutarate
pdb|2YU2|A Chain A, Crystal Structure Of Hjhdm1a Without A-Ketoglutarate
Length = 451
Score = 28.1 bits (61), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 28/112 (25%), Positives = 46/112 (41%), Gaps = 13/112 (11%)
Query: 213 RYVSGVATALLGSGEFSKEEY---------QAANVDPIAQFSKPVASHMNRDHAEDTRII 263
RYV + + EF KE ++ N D A +P H+ E R +
Sbjct: 339 RYVYCITNRSHLTKEFQKESLSMDLELNGLESGNGDEEAVDREPRQVHLTHFELEGLRCL 398
Query: 264 VQHSTSIPVASAY----MLDLDSLGFNVKVLLTVLSGACPQVIDLLLDFVGW 311
V S+P+ + D D+L +VK+LL L+ + P++ + V W
Sbjct: 399 VDKLESLPLHKKCVPTGIEDEDALIADVKILLEELANSDPKLALTGVPIVQW 450
>pdb|4B8J|A Chain A, Rimp_alpha1a
Length = 528
Score = 28.1 bits (61), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 13/46 (28%), Positives = 25/46 (54%)
Query: 261 RIIVQHSTSIPVASAYMLDLDSLGFNVKVLLTVLSGACPQVIDLLL 306
R+I + + + + L S G N K+ + +G CP++++LLL
Sbjct: 251 RLIHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLL 296
>pdb|3MNF|A Chain A, Crystal Structure Of Pac2 Family Protein From Streptomyces
Avermitilis Ma
Length = 250
Score = 28.1 bits (61), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 30/61 (49%), Gaps = 3/61 (4%)
Query: 110 KYEGYPSG--SMVDFACDADGTPILAVSSLAVHTKDLLANPKCSLLVARDPEDRTDLVIT 167
KYEG P+G ++ AC G P +++ + H NPK +L + ED D+ I
Sbjct: 153 KYEG-PTGIVGILQEACTHAGVPAVSLWAAVPHYVSQPPNPKATLALLNRLEDLIDVRIP 211
Query: 168 L 168
L
Sbjct: 212 L 212
>pdb|3RFR|A Chain A, Crystal Structure Of Particulate Methane Monooxygenase
(Pmmo) From Methylocystis Sp. Strain M
pdb|3RFR|E Chain E, Crystal Structure Of Particulate Methane Monooxygenase
(Pmmo) From Methylocystis Sp. Strain M
pdb|3RFR|I Chain I, Crystal Structure Of Particulate Methane Monooxygenase
(Pmmo) From Methylocystis Sp. Strain M
Length = 419
Score = 27.7 bits (60), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 21/89 (23%), Positives = 37/89 (41%)
Query: 20 KTPHSSPMLRFCHSTTRLSSFTPLSFTLRRQLPMASFSAQAVSTGDVKSDANVFELIQKH 79
K S P+ ++ L P FT + P + + +S DV + E++ K
Sbjct: 307 KNGTSQPVRLGEYTAAGLRFLNPTVFTQKPDFPDYLLADRGLSNDDVIAPGESKEIVVKI 366
Query: 80 QEAAARLPPLEEIRTVLDRSVRGMLSTFS 108
Q+A + L ++ D V G+L F+
Sbjct: 367 QDARWDIERLSDLAYDTDSQVGGLLFFFT 395
>pdb|2YNS|A Chain A, Rimp_alpha_b54nls
pdb|2YNS|B Chain B, Rimp_alpha_b54nls
pdb|4B8O|A Chain A, Rimp_alpha_sv40tagnls
pdb|4B8P|A Chain A, Rimp_alpha_a89nls
pdb|4B8P|B Chain B, Rimp_alpha_a89nls
Length = 490
Score = 27.7 bits (60), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 13/46 (28%), Positives = 25/46 (54%)
Query: 261 RIIVQHSTSIPVASAYMLDLDSLGFNVKVLLTVLSGACPQVIDLLL 306
R+I + + + + L S G N K+ + +G CP++++LLL
Sbjct: 213 RLIHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLL 258
>pdb|3A52|A Chain A, Crystal Structure Of Cold-Active Alkailne Phosphatase From
Psychrophile Shewanella Sp.
pdb|3A52|B Chain B, Crystal Structure Of Cold-Active Alkailne Phosphatase From
Psychrophile Shewanella Sp
Length = 400
Score = 27.7 bits (60), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 18/29 (62%), Gaps = 1/29 (3%)
Query: 87 PPLEEI-RTVLDRSVRGMLSTFSQKYEGY 114
P EEI +TV DR + GM ST+ + GY
Sbjct: 26 PDTEEIEQTVFDRLLVGMASTYPARESGY 54
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.133 0.390
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,668,651
Number of Sequences: 62578
Number of extensions: 333494
Number of successful extensions: 761
Number of sequences better than 100.0: 15
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 754
Number of HSP's gapped (non-prelim): 15
length of query: 314
length of database: 14,973,337
effective HSP length: 99
effective length of query: 215
effective length of database: 8,778,115
effective search space: 1887294725
effective search space used: 1887294725
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 51 (24.3 bits)