Query 021285
Match_columns 314
No_of_seqs 257 out of 1510
Neff 5.3
Searched_HMMs 29240
Date Mon Mar 25 15:27:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021285.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/021285hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1b12_A Signal peptidase I; ser 100.0 1.6E-31 5.4E-36 245.8 10.1 127 165-291 1-231 (248)
2 1kca_A Repressor protein CI; g 98.4 1.6E-06 5.5E-11 69.8 10.0 88 171-292 14-109 (109)
3 1umu_A UMUD'; induced mutagene 98.0 2.6E-05 8.7E-10 62.9 9.6 87 170-289 27-115 (116)
4 1jhf_A LEXA repressor; LEXA SO 97.9 8.4E-05 2.9E-09 64.8 11.0 89 170-289 110-200 (202)
5 3bdn_A Lambda repressor; repre 97.9 2.3E-05 7.9E-10 69.4 7.2 89 170-292 140-236 (236)
6 2hnf_A Repressor protein CI101 97.7 0.00021 7.2E-09 59.0 10.3 83 170-284 44-132 (133)
7 3k2z_A LEXA repressor; winged 97.1 0.0036 1.2E-07 54.5 11.1 83 170-285 109-193 (196)
8 2fjr_A Repressor protein CI; g 80.5 3.8 0.00013 34.2 6.7 31 249-285 155-185 (189)
9 2lqh_B Forkhead box O3, FOXO3A 66.1 1.6 5.6E-05 30.0 0.0 16 114-129 23-38 (52)
10 1kca_A Repressor protein CI; g 46.0 29 0.001 26.8 4.9 34 183-220 46-79 (109)
11 1jhf_A LEXA repressor; LEXA SO 38.8 88 0.003 26.2 7.3 31 183-219 138-168 (202)
12 1umu_A UMUD'; induced mutagene 38.5 42 0.0014 25.9 4.8 25 183-212 55-79 (116)
13 2hnf_A Repressor protein CI101 36.3 52 0.0018 26.1 5.1 28 183-214 77-104 (133)
14 3p8d_A Medulloblastoma antigen 33.6 1E+02 0.0036 22.5 5.9 32 179-214 2-33 (67)
15 3k2z_A LEXA repressor; winged 30.1 94 0.0032 26.1 6.0 26 183-213 137-162 (196)
16 3r8s_K 50S ribosomal protein L 28.8 2.4E+02 0.0081 23.0 8.4 25 170-194 19-43 (122)
17 3bbo_M Ribosomal protein L14; 20.7 3.4E+02 0.012 22.0 8.9 29 247-276 78-106 (121)
No 1
>1b12_A Signal peptidase I; serine proteinase, serine-dependant hydrolase, signal peptid processing, protein translocation; HET: 1PN; 1.95A {Escherichia coli} SCOP: b.87.1.2 PDB: 3s04_A* 1t7d_A* 3iiq_A* 1kn9_A*
Probab=99.97 E-value=1.6e-31 Score=245.83 Aligned_cols=127 Identities=35% Similarity=0.518 Sum_probs=102.1
Q ss_pred HHHheeeeEEEcCCCCCcCCCCCCEEEEEeec----------------cc----------C--CCceEEEEEEecCCCEE
Q 021285 165 FRSFVAEPRYIPSLSMYPTFDVGDRIVAEKEV----------------GY----------T--DDDVFIKRVVAKEGDVV 216 (314)
Q Consensus 165 l~~fv~~~~~V~G~SM~PTL~~GD~Vlv~k~~----------------~~----------~--~g~~lVKRVvGlPGDtV 216 (314)
++.|+++.+.|+|+||+|||+.||+|+|++.. .. + .+..+||||+|+|||+|
T Consensus 1 ir~fv~~~~~v~g~SM~Ptl~~GD~vlv~k~~yg~r~P~~~~~l~~~~~~~rGDIvvf~~p~~~~~~~iKRViglpGD~v 80 (248)
T 1b12_A 1 VRSFIYEPFQIPSGSMMPTLLIGDFILVEKFAYGIKDPIYQKTLIETGHPKRGDIVVFKYPEDPKLDYIKRAVGLPGDKV 80 (248)
T ss_dssp -CBCCEEEEECCSCTTTTTSCTTEEEEEEESEEEEECGGGSCEEEEECCCCTTCEEEEECTTCTTSEEEEEEEECTTCEE
T ss_pred CeEEEEEEEEeccccccccccCCCEEEEEecccCcccccccccccccCCCCCCcEEEEEeCCCCCceEEEEEEeeCCCEE
Confidence 35789999999999999999999999998721 11 1 24579999999999999
Q ss_pred EEeCC--EEEECC-----------EEccccccc-----------------------------------------------
Q 021285 217 EVREG--KLIVNG-----------VVRNEDYIL----------------------------------------------- 236 (314)
Q Consensus 217 ~I~dg--~vyING-----------k~i~e~yi~----------------------------------------------- 236 (314)
+++++ .+|||| +.+.+.+..
T Consensus 81 ~i~~~~~~l~ING~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~~~~~~~~~~~~~~~e~l~~~~~ 160 (248)
T 1b12_A 81 TYDPVSKELTIQPGCSSGQACENALPVTYSNVEPSDFVQTFSRRNGGEATSGFFEVPKNETKENGIRLSERKETLGDVTH 160 (248)
T ss_dssp EEETTTTEEEEETTCCSSCCCCCCCCEEECCCEEEEEEEEEECGGGSCEEEEEEECCTTCCCTTEEEEEEEEEEETTEEE
T ss_pred EEEcCceEEEECCccccccccccceeeeeeccccccccccccccccccccccccccccccccccchhhhhHHhhhcCccc
Confidence 99999 999999 555432110
Q ss_pred ---cCCC-------C------CCcceEecCCeEEEecCCCCCCCCCCCcCcccCCCeeEEEEEEEcCCCCc
Q 021285 237 ---EAPS-------Y------NMTPITVPENSVFVMGDNRNNSYDSHVWGPLPAKNIIGRSVFRYWPPQRI 291 (314)
Q Consensus 237 ---~~p~-------~------~~~~~~VP~g~yfVLGDNr~nS~DSRyfG~Vp~~~IiGKV~~i~wP~~ri 291 (314)
..+. + ....++||+||||||||||++|.||||||+||+++|+|||+++|||+++.
T Consensus 161 ~~~~~p~~~~~~~~~~~~~~~~~~~~~VP~g~yFvmGDNR~nS~DSR~~G~Vp~~~IvGka~~i~~s~~~~ 231 (248)
T 1b12_A 161 RILTVPIAQDQVGMYYQQPGQQLATWIVPPGQYFMMGDNRDNSADSRYWGFVPEANLVGRATAIWMSFDKQ 231 (248)
T ss_dssp EEEECTTCCCCGGGSCCCTTCCTTEEECCTTEEEEECSBTTSCCCHHHHCCEEGGGEEEEEEEEEEEBC--
T ss_pred eeEecCCccccccchhcccccccccEEeCCCcEEEecCCCcccCCCCcccccCHHHeEEEEEEEEEeCCcc
Confidence 0011 1 22367999999999999999999999999999999999999999988765
No 2
>1kca_A Repressor protein CI; gene regulation, DNA-binding, lambda repressor, protein oligomerization, DNA-looping; 2.91A {Enterobacteria phage lambda} SCOP: b.87.1.1
Probab=98.41 E-value=1.6e-06 Score=69.84 Aligned_cols=88 Identities=22% Similarity=0.338 Sum_probs=56.4
Q ss_pred eeEEEcCCCCC------cCCCCCCEEEEEeecccCCCceEEEEEEecCCCEEEEe-CC-EEEECCEEccccccccCCCCC
Q 021285 171 EPRYIPSLSMY------PTFDVGDRIVAEKEVGYTDDDVFIKRVVAKEGDVVEVR-EG-KLIVNGVVRNEDYILEAPSYN 242 (314)
Q Consensus 171 ~~~~V~G~SM~------PTL~~GD~Vlv~k~~~~~~g~~lVKRVvGlPGDtV~I~-dg-~vyINGk~i~e~yi~~~p~~~ 242 (314)
..++|.|+||+ |+|.+||+|++++..... .||.|.+. ++ .++|.
T Consensus 14 f~~~V~GdSM~~~~g~~p~i~~Gd~v~Vd~~~~~~------------~Gdivv~~~~~~~~~vK---------------- 65 (109)
T 1kca_A 14 FWLEVEGNSMTAPTGSKPSFPDGMLILVDPEQAVE------------PGDFCIARLGGDEFTFK---------------- 65 (109)
T ss_dssp EEEECCSSTTCCCTTCSSCCCTTCEEEEETTSCCC------------TTCEEEEECSTTCEEEE----------------
T ss_pred EEEEEeCcCcCCCCCCCCeeCCCCEEEEecCCcCC------------CCCEEEEEECCCeEEEE----------------
Confidence 46889999999 999999999998843222 34433332 11 22221
Q ss_pred CcceEecCCeEEEecCCCCCCCCCCCcCcccCCCeeEEEEEEEcCCCCcc
Q 021285 243 MTPITVPENSVFVMGDNRNNSYDSHVWGPLPAKNIIGRSVFRYWPPQRIG 292 (314)
Q Consensus 243 ~~~~~VP~g~yfVLGDNr~nS~DSRyfG~Vp~~~IiGKV~~i~wP~~rig 292 (314)
.+....|.+++.+||.. +.....- ..-.|+|+|++.+||+..||
T Consensus 66 --rl~~~~~~~~L~s~N~~--y~~~~~~--~~~~IiG~Vv~~~~~~~~~~ 109 (109)
T 1kca_A 66 --KLIRDSGQVFLQPLNPQ--YPMIPCN--ESCSVVGKVIASQWPEETFG 109 (109)
T ss_dssp --EEEEETTEEEEECSSTT--SCCEECC--TTCEEEEEEEEEECCGGGGC
T ss_pred --EEEEeCCEEEEEECCCC--CCCEEcC--CCcEEEEEEEEEEeCHHHcC
Confidence 11223567888899863 1111111 35689999999999987765
No 3
>1umu_A UMUD'; induced mutagenesis, SOS mutagenesis, DNA repair, beta- lactamase cleavage reaction, LEXA repressor, lambda CI; 2.50A {Escherichia coli} SCOP: b.87.1.1 PDB: 1i4v_A 1ay9_A
Probab=98.04 E-value=2.6e-05 Score=62.87 Aligned_cols=87 Identities=15% Similarity=0.205 Sum_probs=49.6
Q ss_pred eeeEEEcCCCCCc-CCCCCCEEEEEeecccCCCceEEEEEEecCCCEEEEe-CCEEEECCEEccccccccCCCCCCcceE
Q 021285 170 AEPRYIPSLSMYP-TFDVGDRIVAEKEVGYTDDDVFIKRVVAKEGDVVEVR-EGKLIVNGVVRNEDYILEAPSYNMTPIT 247 (314)
Q Consensus 170 ~~~~~V~G~SM~P-TL~~GD~Vlv~k~~~~~~g~~lVKRVvGlPGDtV~I~-dg~vyINGk~i~e~yi~~~p~~~~~~~~ 247 (314)
...+.|.|+||+| +|++||+|++++..... .||.+.+. ++.++|. . +.
T Consensus 27 ~~~~~v~GdSM~p~~i~~Gd~v~vd~~~~~~------------~gdivv~~~~~~~~vK--r----------------~~ 76 (116)
T 1umu_A 27 TYFVKASGDSMIDGGISDGDLLIVDSAITAS------------HGDIVIAAVDGEFTVK--K----------------LQ 76 (116)
T ss_dssp EEEEECCSSTTGGGTCCTTCEEEEETTSCCC------------TTCEEEEEETTEEEEE--E----------------EE
T ss_pred EEEEEECCCCcCCCCCCCCCEEEEEcCCCCC------------CCCEEEEEECCEEEEE--E----------------EE
Confidence 4568899999999 89999999998743333 34433322 2222221 0 01
Q ss_pred ecCCeEEEecCCCCCCCCCCCcCcccCCCeeEEEEEEEcCCC
Q 021285 248 VPENSVFVMGDNRNNSYDSHVWGPLPAKNIIGRSVFRYWPPQ 289 (314)
Q Consensus 248 VP~g~yfVLGDNr~nS~DSRyfG~Vp~~~IiGKV~~i~wP~~ 289 (314)
.-. .+++.+||.. +....+..-..-.|+|+|++.+..+.
T Consensus 77 ~~~-~~~L~s~N~~--y~~~~i~~~~~~~IiG~Vv~~~r~~r 115 (116)
T 1umu_A 77 LRP-TVQLIPMNSA--YSPITISSEDTLDVFGVVIHVVKAAT 115 (116)
T ss_dssp CSS-SCEEECSSTT--SCCEECCTTSCEEEEEEEEEEEC---
T ss_pred eCC-cEEEECCCCC--CCCEEcCCCCeEEEEEEEEEEEEecC
Confidence 112 5788888863 22221111123469999999877654
No 4
>1jhf_A LEXA repressor; LEXA SOS repressor, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.2 b.87.1.1 PDB: 1jhh_A 3jso_A* 3jsp_A* 3k3r_E* 1jhc_A 1jhe_A 1lea_A 1leb_A
Probab=97.89 E-value=8.4e-05 Score=64.77 Aligned_cols=89 Identities=17% Similarity=0.175 Sum_probs=52.4
Q ss_pred eeeEEEcCCCCCcC-CCCCCEEEEEeecccCCCceEEEEEEecCCCEEEEeCCEEEECCEEccccccccCCCCCCcceEe
Q 021285 170 AEPRYIPSLSMYPT-FDVGDRIVAEKEVGYTDDDVFIKRVVAKEGDVVEVREGKLIVNGVVRNEDYILEAPSYNMTPITV 248 (314)
Q Consensus 170 ~~~~~V~G~SM~PT-L~~GD~Vlv~k~~~~~~g~~lVKRVvGlPGDtV~I~dg~vyINGk~i~e~yi~~~p~~~~~~~~V 248 (314)
...+.|.|+||+|+ |.+||+|++++.....+|++++-++ ++.++|. .+..
T Consensus 110 ~~~~~v~GdSM~p~~i~~Gd~v~vd~~~~~~~G~i~v~~~-----------~~~~~vK------------------rl~~ 160 (202)
T 1jhf_A 110 DFLLRVSGMSMKDIGIMDGDLLAVHKTQDVRNGQVVVARI-----------DDEVTVK------------------RLKK 160 (202)
T ss_dssp CEEEECCSSTTGGGTCCTTCEEEEEECSCCCTTSEEEEEE-----------TTEEEEE------------------EEEE
T ss_pred EEEEEECCCCCCCCCCCCCCEEEEeccCCcCCCeEEEEEE-----------CCEEEEE------------------EEEE
Confidence 34688999999999 9999999998843333333333222 2222221 1233
Q ss_pred cCCeEEEecCCCCCCCCCCCcC-cccCCCeeEEEEEEEcCCC
Q 021285 249 PENSVFVMGDNRNNSYDSHVWG-PLPAKNIIGRSVFRYWPPQ 289 (314)
Q Consensus 249 P~g~yfVLGDNr~nS~DSRyfG-~Vp~~~IiGKV~~i~wP~~ 289 (314)
+.|.+++.+||.. +....+. .-..-.|+|+|++.+..++
T Consensus 161 ~~~~~~l~s~N~~--y~~~~~~~~~~~~~IiG~Vv~~~r~~~ 200 (202)
T 1jhf_A 161 QGNKVELLPENSE--FKPIVVDLRQQSFTIEGLAVGVIRNGD 200 (202)
T ss_dssp ETTEEEEECSSTT--CCCEEEETTTSCEEEEEEEEEEEEC--
T ss_pred eCCEEEEEECCCC--CCCEEccCCCCceEEEEEEEEEEEccc
Confidence 5677888888852 2221111 0012359999998876544
No 5
>3bdn_A Lambda repressor; repressor, allostery; HET: DNA; 3.91A {Enterobacteria phage lambda}
Probab=97.87 E-value=2.3e-05 Score=69.38 Aligned_cols=89 Identities=21% Similarity=0.318 Sum_probs=55.7
Q ss_pred eeeEEEcCCCCC------cCCCCCCEEEEEeecccCCCceEEEEEEecCCCEEEEe-C-CEEEECCEEccccccccCCCC
Q 021285 170 AEPRYIPSLSMY------PTFDVGDRIVAEKEVGYTDDDVFIKRVVAKEGDVVEVR-E-GKLIVNGVVRNEDYILEAPSY 241 (314)
Q Consensus 170 ~~~~~V~G~SM~------PTL~~GD~Vlv~k~~~~~~g~~lVKRVvGlPGDtV~I~-d-g~vyINGk~i~e~yi~~~p~~ 241 (314)
...+.|.|+||+ |+|.+||+|+|++.... ..||.|.+. + +.++|
T Consensus 140 ~~~l~V~GdSM~~~~g~~P~i~~Gd~v~vd~~~~~------------~~g~ivv~~~~~~~~~v---------------- 191 (236)
T 3bdn_A 140 AFWLEVEGNSMTAPTGSKPSFPDGMLILVDPEQAV------------EPGDFCIARLGGDEFTF---------------- 191 (236)
T ss_dssp CEEEECCSSSSCCCSSCSSCCCSSCEEEECCSSCC------------CTTSEEEEESTTTCCCC----------------
T ss_pred EEEEEEeCCCcCCCCCCCCcCCCCCEEEECCCCCC------------CCCcEEEEEECCCeEEE----------------
Confidence 346889999999 99999999999873322 245544443 1 11111
Q ss_pred CCcceEecCCeEEEecCCCCCCCCCCCcCcccCCCeeEEEEEEEcCCCCcc
Q 021285 242 NMTPITVPENSVFVMGDNRNNSYDSHVWGPLPAKNIIGRSVFRYWPPQRIG 292 (314)
Q Consensus 242 ~~~~~~VP~g~yfVLGDNr~nS~DSRyfG~Vp~~~IiGKV~~i~wP~~rig 292 (314)
..+....|.+++..||.. +....+- ..-.|+|+|++.+||.+.|+
T Consensus 192 --Krl~~~~~~~~L~s~N~~--y~~~~~~--~~~~IiG~Vv~~~~~~~~~~ 236 (236)
T 3bdn_A 192 --KKLIRGSGQVFLQPLNPQ--YPMIPCN--ESCSVVGKVIASQWPEETFG 236 (236)
T ss_dssp --EEEECCSSSCEEECSSTT--SCCBC----CCCEEEEEEEECCCCSSSCC
T ss_pred --EEEEEcCCcEEEEeCCCC--CCCeecC--CCcEEEEEEEEEEcCHHhcC
Confidence 112223566778888863 2221111 34579999999999987764
No 6
>2hnf_A Repressor protein CI101-229DM-K192A; viral protein; 1.80A {Escherichia coli} PDB: 2ho0_A 1f39_A
Probab=97.73 E-value=0.00021 Score=58.95 Aligned_cols=83 Identities=20% Similarity=0.239 Sum_probs=49.5
Q ss_pred eeeEEEcCCCCC------cCCCCCCEEEEEeecccCCCceEEEEEEecCCCEEEEeCCEEEECCEEccccccccCCCCCC
Q 021285 170 AEPRYIPSLSMY------PTFDVGDRIVAEKEVGYTDDDVFIKRVVAKEGDVVEVREGKLIVNGVVRNEDYILEAPSYNM 243 (314)
Q Consensus 170 ~~~~~V~G~SM~------PTL~~GD~Vlv~k~~~~~~g~~lVKRVvGlPGDtV~I~dg~vyINGk~i~e~yi~~~p~~~~ 243 (314)
...++|.|+||+ |+|.+||+|++++.....+++.++-++ .|+ .++|.
T Consensus 44 ~f~~~V~GdSM~~~~g~~p~i~~Gd~v~vd~~~~~~~Gdivv~~~---~~~-------~~~vK----------------- 96 (133)
T 2hnf_A 44 AFWLEVEGNSMTTPTGSKTSFPDGMLILVDPEQAVEPGDFCIARL---GGD-------EFTFA----------------- 96 (133)
T ss_dssp CEEEECCSSTTCCC---CCCCCTTCEEEEETTSCCCTTSEEEEEE---TTT-------EEEEE-----------------
T ss_pred EEEEEEeCCCcCCCcCCCCccCCCCEEEEccCCCCCCCCEEEEEE---CCC-------EEEEE-----------------
Confidence 346889999999 999999999999843333333333222 111 22221
Q ss_pred cceEecCCeEEEecCCCCCCCCCCCcCcccCCCeeEEEEEE
Q 021285 244 TPITVPENSVFVMGDNRNNSYDSHVWGPLPAKNIIGRSVFR 284 (314)
Q Consensus 244 ~~~~VP~g~yfVLGDNr~nS~DSRyfG~Vp~~~IiGKV~~i 284 (314)
.+....|.+++.+||.. +.....- ..-.|+|+|++.
T Consensus 97 -rl~~~~~~~~L~s~N~~--y~~~~~~--~~~~IiG~Vv~~ 132 (133)
T 2hnf_A 97 -KLIRDSGQVFLQPLNPQ--YPMIPCN--ESCSVVGKVIAS 132 (133)
T ss_dssp -EEEEETTEEEEECSSTT--SCCEECS--TTEEEEEEEEEE
T ss_pred -EEEEeCCeEEEEECCCC--CCCEEcC--CCCEEEEEEEEE
Confidence 11223567888899863 2122111 345799999874
No 7
>3k2z_A LEXA repressor; winged helix-turn-helix, SOS system, autoca cleavage, DNA damage, DNA repair, DNA replication, DNA-BIND hydrolase; 1.37A {Thermotoga maritima}
Probab=97.12 E-value=0.0036 Score=54.48 Aligned_cols=83 Identities=18% Similarity=0.201 Sum_probs=50.6
Q ss_pred eeeEEEcCCCC-CcCCCCCCEEEEEeecccCCCceEEEEEEecCCCEEEEe-CCEEEECCEEccccccccCCCCCCcceE
Q 021285 170 AEPRYIPSLSM-YPTFDVGDRIVAEKEVGYTDDDVFIKRVVAKEGDVVEVR-EGKLIVNGVVRNEDYILEAPSYNMTPIT 247 (314)
Q Consensus 170 ~~~~~V~G~SM-~PTL~~GD~Vlv~k~~~~~~g~~lVKRVvGlPGDtV~I~-dg~vyINGk~i~e~yi~~~p~~~~~~~~ 247 (314)
....+|.|+|| +|++.+||+|+|++.... ..||.|.+. ++.++|. .+.
T Consensus 109 ~f~l~v~GdSM~~p~i~~GD~viv~~~~~~------------~~G~ivv~~~~~~~~vK------------------r~~ 158 (196)
T 3k2z_A 109 HFLLKVKGESMIEEHICDGDLVLVRRQDWA------------QNGDIVAAMVDGEVTLA------------------KFY 158 (196)
T ss_dssp EEEEECCSSTTGGGTCCTTCEEEEEECSCC------------CTTCEEEEEETTEEEEE------------------EEE
T ss_pred EEEEEEeCCCcCCCCCCCCCEEEEeccCcC------------CCCCEEEEEECCcEEEE------------------EEE
Confidence 45689999999 699999999999984322 244444332 2222221 122
Q ss_pred ecCCeEEEecCCCCCCCCCCCcCcccCCCeeEEEEEEE
Q 021285 248 VPENSVFVMGDNRNNSYDSHVWGPLPAKNIIGRSVFRY 285 (314)
Q Consensus 248 VP~g~yfVLGDNr~nS~DSRyfG~Vp~~~IiGKV~~i~ 285 (314)
...|.+++..||... .....- -..-.|+|+|++.+
T Consensus 159 ~~~~~~~L~~~N~~y--~~i~i~-~~~~~i~G~Vv~~~ 193 (196)
T 3k2z_A 159 QRGDTVELRPANREM--SSMFFR-AEKVKILGKVVGVF 193 (196)
T ss_dssp EETTEEEEECSCTTS--CCEEEE-GGGCEEEEEEEEEE
T ss_pred EECCEEEEEECCCCC--CCEEec-CCCEEEEEEEEEEE
Confidence 335678888888632 111110 12357999998875
No 8
>2fjr_A Repressor protein CI; genetic switch, regulation, cooperativity, transcription regulator; 1.95A {Enterobacteria phage 186} PDB: 2fkd_A
Probab=80.53 E-value=3.8 Score=34.22 Aligned_cols=31 Identities=26% Similarity=0.397 Sum_probs=18.5
Q ss_pred cCCeEEEecCCCCCCCCCCCcCcccCCCeeEEEEEEE
Q 021285 249 PENSVFVMGDNRNNSYDSHVWGPLPAKNIIGRSVFRY 285 (314)
Q Consensus 249 P~g~yfVLGDNr~nS~DSRyfG~Vp~~~IiGKV~~i~ 285 (314)
+.|.+.+..||.+ ...- ...=.|+|||++.+
T Consensus 155 ~~~~i~L~s~N~~-----~~i~-~~~i~IiG~Vv~~~ 185 (189)
T 2fjr_A 155 PGRKLHVAGGKVP-----FECG-IDDIKTLGRVVGVY 185 (189)
T ss_dssp TTTEEEEESSSSC-----EEEE-TTSSEEEEEEEEEE
T ss_pred CCCEEEEEeCCCC-----eEec-ccceEEEEEEEEEE
Confidence 4456778888851 1110 12346999999764
No 9
>2lqh_B Forkhead box O3, FOXO3A; promiscuous binding, intrinsic disorder, transcription; NMR {Homo sapiens} PDB: 2lqi_B
Probab=66.12 E-value=1.6 Score=29.97 Aligned_cols=16 Identities=50% Similarity=1.060 Sum_probs=11.0
Q ss_pred CCCCCCCCCCCCCCCC
Q 021285 114 GSGGGGGGDGGGGDGS 129 (314)
Q Consensus 114 ~~~~~~~~~~g~g~~~ 129 (314)
.+|||.+|++|+|+..
T Consensus 23 sdgggsgggsgggsle 38 (52)
T 2lqh_B 23 SDGGGSGGGSGGGSLE 38 (52)
Confidence 3577777777777765
No 10
>1kca_A Repressor protein CI; gene regulation, DNA-binding, lambda repressor, protein oligomerization, DNA-looping; 2.91A {Enterobacteria phage lambda} SCOP: b.87.1.1
Probab=45.99 E-value=29 Score=26.85 Aligned_cols=34 Identities=21% Similarity=0.311 Sum_probs=23.5
Q ss_pred CCCCCCEEEEEeecccCCCceEEEEEEecCCCEEEEeC
Q 021285 183 TFDVGDRIVAEKEVGYTDDDVFIKRVVAKEGDVVEVRE 220 (314)
Q Consensus 183 TL~~GD~Vlv~k~~~~~~g~~lVKRVvGlPGDtV~I~d 220 (314)
+++.||+|++.. .++..++||++...|......+
T Consensus 46 ~~~~Gdivv~~~----~~~~~~vKrl~~~~~~~~L~s~ 79 (109)
T 1kca_A 46 AVEPGDFCIARL----GGDEFTFKKLIRDSGQVFLQPL 79 (109)
T ss_dssp CCCTTCEEEEEC----STTCEEEEEEEEETTEEEEECS
T ss_pred cCCCCCEEEEEE----CCCeEEEEEEEEeCCEEEEEEC
Confidence 478999999864 2257899999986554333333
No 11
>1jhf_A LEXA repressor; LEXA SOS repressor, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.2 b.87.1.1 PDB: 1jhh_A 3jso_A* 3jsp_A* 3k3r_E* 1jhc_A 1jhe_A 1lea_A 1leb_A
Probab=38.81 E-value=88 Score=26.16 Aligned_cols=31 Identities=39% Similarity=0.574 Sum_probs=24.6
Q ss_pred CCCCCCEEEEEeecccCCCceEEEEEEecCCCEEEEe
Q 021285 183 TFDVGDRIVAEKEVGYTDDDVFIKRVVAKEGDVVEVR 219 (314)
Q Consensus 183 TL~~GD~Vlv~k~~~~~~g~~lVKRVvGlPGDtV~I~ 219 (314)
.+..||++++.. ++..+|||+. .+|+.+.+.
T Consensus 138 ~~~~G~i~v~~~-----~~~~~vKrl~-~~~~~~~l~ 168 (202)
T 1jhf_A 138 DVRNGQVVVARI-----DDEVTVKRLK-KQGNKVELL 168 (202)
T ss_dssp CCCTTSEEEEEE-----TTEEEEEEEE-EETTEEEEE
T ss_pred CcCCCeEEEEEE-----CCEEEEEEEE-EeCCEEEEE
Confidence 578899998864 4689999998 577777664
No 12
>1umu_A UMUD'; induced mutagenesis, SOS mutagenesis, DNA repair, beta- lactamase cleavage reaction, LEXA repressor, lambda CI; 2.50A {Escherichia coli} SCOP: b.87.1.1 PDB: 1i4v_A 1ay9_A
Probab=38.55 E-value=42 Score=25.90 Aligned_cols=25 Identities=24% Similarity=0.404 Sum_probs=20.4
Q ss_pred CCCCCCEEEEEeecccCCCceEEEEEEecC
Q 021285 183 TFDVGDRIVAEKEVGYTDDDVFIKRVVAKE 212 (314)
Q Consensus 183 TL~~GD~Vlv~k~~~~~~g~~lVKRVvGlP 212 (314)
+++.||++++.. ++..++||+...+
T Consensus 55 ~~~~gdivv~~~-----~~~~~vKr~~~~~ 79 (116)
T 1umu_A 55 TASHGDIVIAAV-----DGEFTVKKLQLRP 79 (116)
T ss_dssp CCCTTCEEEEEE-----TTEEEEEEEECSS
T ss_pred CCCCCCEEEEEE-----CCEEEEEEEEeCC
Confidence 478899998865 4578999999876
No 13
>2hnf_A Repressor protein CI101-229DM-K192A; viral protein; 1.80A {Escherichia coli} PDB: 2ho0_A 1f39_A
Probab=36.26 E-value=52 Score=26.11 Aligned_cols=28 Identities=18% Similarity=0.388 Sum_probs=21.3
Q ss_pred CCCCCCEEEEEeecccCCCceEEEEEEecCCC
Q 021285 183 TFDVGDRIVAEKEVGYTDDDVFIKRVVAKEGD 214 (314)
Q Consensus 183 TL~~GD~Vlv~k~~~~~~g~~lVKRVvGlPGD 214 (314)
+++.||+|++.. .+++.++||+.-..|.
T Consensus 77 ~~~~Gdivv~~~----~~~~~~vKrl~~~~~~ 104 (133)
T 2hnf_A 77 AVEPGDFCIARL----GGDEFTFAKLIRDSGQ 104 (133)
T ss_dssp CCCTTSEEEEEE----TTTEEEEEEEEEETTE
T ss_pred CCCCCCEEEEEE----CCCEEEEEEEEEeCCe
Confidence 578999999965 2357899999876553
No 14
>3p8d_A Medulloblastoma antigen MU-MB-50.72; tudor domain, lysine-methylated P53 binding, histone binding binding; 2.00A {Homo sapiens}
Probab=33.58 E-value=1e+02 Score=22.54 Aligned_cols=32 Identities=22% Similarity=0.367 Sum_probs=25.5
Q ss_pred CCCcCCCCCCEEEEEeecccCCCceEEEEEEecCCC
Q 021285 179 SMYPTFDVGDRIVAEKEVGYTDDDVFIKRVVAKEGD 214 (314)
Q Consensus 179 SM~PTL~~GD~Vlv~k~~~~~~g~~lVKRVvGlPGD 214 (314)
-|.|.++.||.|++.. .++..|=.+|.++-|+
T Consensus 2 ~~~~~~~vGd~vmArW----~D~~yYpA~I~si~~~ 33 (67)
T 3p8d_A 2 HMSSEFQINEQVLACW----SDCRFYPAKVTAVNKD 33 (67)
T ss_dssp ---CCCCTTCEEEEEC----TTSCEEEEEEEEECTT
T ss_pred CcCcccccCCEEEEEc----CCCCEeeEEEEEECCC
Confidence 4889999999999974 6788899999988886
No 15
>3k2z_A LEXA repressor; winged helix-turn-helix, SOS system, autoca cleavage, DNA damage, DNA repair, DNA replication, DNA-BIND hydrolase; 1.37A {Thermotoga maritima}
Probab=30.06 E-value=94 Score=26.12 Aligned_cols=26 Identities=19% Similarity=0.236 Sum_probs=20.3
Q ss_pred CCCCCCEEEEEeecccCCCceEEEEEEecCC
Q 021285 183 TFDVGDRIVAEKEVGYTDDDVFIKRVVAKEG 213 (314)
Q Consensus 183 TL~~GD~Vlv~k~~~~~~g~~lVKRVvGlPG 213 (314)
+...||+|++.. +++.+|||+.-..|
T Consensus 137 ~~~~G~ivv~~~-----~~~~~vKr~~~~~~ 162 (196)
T 3k2z_A 137 WAQNGDIVAAMV-----DGEVTLAKFYQRGD 162 (196)
T ss_dssp CCCTTCEEEEEE-----TTEEEEEEEEEETT
T ss_pred cCCCCCEEEEEE-----CCcEEEEEEEEECC
Confidence 568899999865 46899999976554
No 16
>3r8s_K 50S ribosomal protein L14; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 3j19_K 3oat_K* 3oas_K* 3ofd_K 3ofc_K 3ofr_K* 3ofz_K* 3og0_K 3ofq_K 3r8t_K 3i1n_K 1p85_I 1p86_I 1vs8_K 1vs6_K 2aw4_K 2awb_K 1vt2_K 2i2v_K 2i2t_K* ...
Probab=28.81 E-value=2.4e+02 Score=22.98 Aligned_cols=25 Identities=20% Similarity=-0.091 Sum_probs=17.8
Q ss_pred eeeEEEcCCCCCcCCCCCCEEEEEe
Q 021285 170 AEPRYIPSLSMYPTFDVGDRIVAEK 194 (314)
Q Consensus 170 ~~~~~V~G~SM~PTL~~GD~Vlv~k 194 (314)
+..+.|.|.+-...-..||+|++.-
T Consensus 19 v~cI~Vlgg~~r~~a~iGD~IvvsV 43 (122)
T 3r8s_K 19 VMCIKVLGGSHRRYAGVGDIIKITI 43 (122)
T ss_dssp EEEEEECSSSSCCCBCTTCEEEEEE
T ss_pred EEEEEEeCCCCCCcccCCCEEEEEE
Confidence 4456777766666777889888765
No 17
>3bbo_M Ribosomal protein L14; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}
Probab=20.72 E-value=3.4e+02 Score=21.98 Aligned_cols=29 Identities=10% Similarity=0.373 Sum_probs=19.2
Q ss_pred EecCCeEEEecCCCCCCCCCCCcCcccCCC
Q 021285 247 TVPENSVFVMGDNRNNSYDSHVWGPLPAKN 276 (314)
Q Consensus 247 ~VP~g~yfVLGDNr~nS~DSRyfG~Vp~~~ 276 (314)
...+|..-++.++ .+-.=+|-||||+++.
T Consensus 78 ~FddNa~Vlin~~-g~p~GTrI~GPVarEl 106 (121)
T 3bbo_M 78 RYDDNAAVIIDQE-GNPKGTRIFGAIAREL 106 (121)
T ss_dssp CCSSCEEEECCTT-SSCSSSCCCSCCCGGG
T ss_pred EeCCceEEEECCC-CCEeEeEEEcCcCHHH
Confidence 3344555555544 3677889999999764
Done!