Query 021286
Match_columns 314
No_of_seqs 171 out of 1726
Neff 8.7
Searched_HMMs 29240
Date Mon Mar 25 15:28:11 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021286.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/021286hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3dss_B Geranylgeranyl transfer 100.0 1.8E-77 6.3E-82 547.9 34.8 312 2-313 16-327 (331)
2 1n4q_B Geranyltransferase type 100.0 1.8E-74 6.2E-79 534.5 27.6 304 3-310 19-355 (377)
3 3dra_B Geranylgeranyltransfera 100.0 2.3E-74 8E-79 532.5 25.1 312 1-314 1-389 (390)
4 2h6f_B Protein farnesyltransfe 100.0 8E-71 2.7E-75 519.2 27.3 305 3-310 72-412 (437)
5 3q7a_B Farnesyltransferase bet 100.0 1.5E-70 5.1E-75 518.0 27.3 285 3-289 60-423 (520)
6 3dss_B Geranylgeranyl transfer 100.0 4.3E-48 1.5E-52 353.7 26.3 240 2-241 64-304 (331)
7 2h6f_B Protein farnesyltransfe 100.0 5.6E-45 1.9E-49 343.3 20.3 237 51-289 72-313 (437)
8 1n4q_B Geranyltransferase type 100.0 4.5E-41 1.5E-45 311.1 24.4 253 2-256 65-357 (377)
9 3q7a_B Farnesyltransferase bet 100.0 6.3E-40 2.2E-44 309.5 20.8 307 3-310 108-512 (520)
10 3dra_B Geranylgeranyltransfera 100.0 1.8E-39 6.3E-44 299.7 22.3 236 4-240 53-362 (390)
11 2sqc_A Squalene-hopene cyclase 99.9 1.4E-25 4.7E-30 222.0 25.5 279 6-287 283-624 (631)
12 1w6k_A Lanosterol synthase; cy 99.9 4.2E-25 1.4E-29 221.0 21.7 279 6-287 358-719 (732)
13 2sqc_A Squalene-hopene cyclase 99.9 9.4E-24 3.2E-28 208.9 24.2 277 5-290 240-569 (631)
14 1w6k_A Lanosterol synthase; cy 99.9 4.8E-24 1.6E-28 213.4 19.4 213 6-219 411-691 (732)
15 1qqf_A Protein (complement C3D 99.7 2.8E-16 9.7E-21 140.3 19.8 208 54-286 40-272 (277)
16 2wy7_A Complement C3D fragment 99.7 6.9E-16 2.4E-20 140.0 19.6 210 54-288 56-290 (310)
17 1qqf_A Protein (complement C3D 99.7 7.8E-15 2.7E-19 130.9 19.3 206 8-237 42-272 (277)
18 2wy7_A Complement C3D fragment 99.6 2.3E-14 8E-19 129.9 20.4 207 8-238 58-289 (310)
19 1hzf_A Complement factor C4A; 99.5 1.7E-13 5.8E-18 127.1 18.0 213 54-287 93-359 (367)
20 1hzf_A Complement factor C4A; 99.5 1.7E-13 5.9E-18 127.0 16.2 212 6-237 93-358 (367)
21 2hr0_B Complement C3 alpha' ch 99.4 1.4E-11 4.8E-16 126.7 18.3 208 55-287 302-534 (915)
22 2pn5_A TEP1R, thioester-contai 99.4 2.5E-11 8.6E-16 129.5 19.7 230 32-287 845-1101(1325)
23 4acq_A Alpha-2-macroglobulin; 99.3 1.5E-10 5.1E-15 123.8 19.8 217 55-287 986-1241(1451)
24 2hr0_B Complement C3 alpha' ch 99.2 2.4E-10 8.4E-15 117.5 19.0 206 8-237 303-533 (915)
25 4acq_A Alpha-2-macroglobulin; 99.2 2.3E-10 8E-15 122.3 16.4 218 7-237 986-1240(1451)
26 2pn5_A TEP1R, thioester-contai 99.1 7.6E-10 2.6E-14 118.1 14.4 205 9-238 877-1101(1325)
27 2b39_A C3; thioester, immune d 99.0 1.5E-08 5.2E-13 110.1 21.5 207 57-287 1051-1281(1661)
28 4fxk_B Complement C4-A alpha c 98.9 2E-07 6.8E-12 94.2 24.9 237 32-287 338-636 (767)
29 4fxk_B Complement C4-A alpha c 98.9 5.4E-08 1.9E-12 98.4 19.5 214 6-237 363-635 (767)
30 1r76_A Pectate lyase; A-helica 98.9 2.5E-09 8.6E-14 98.3 8.4 161 6-168 83-334 (408)
31 2b39_A C3; thioester, immune d 98.8 1E-07 3.6E-12 103.6 19.8 200 14-237 1056-1280(1661)
32 1r76_A Pectate lyase; A-helica 98.8 8.2E-09 2.8E-13 94.9 9.4 160 54-216 83-334 (408)
33 3cu7_A Complement C5; Mg domai 98.7 1E-07 3.6E-12 103.7 15.0 206 61-287 1056-1300(1676)
34 3cu7_A Complement C5; Mg domai 98.7 2.5E-07 8.5E-12 100.8 15.7 213 5-237 1041-1299(1676)
35 1gxm_A Pectate lyase; mechanis 98.6 4.5E-08 1.5E-12 87.6 6.9 115 105-220 36-193 (332)
36 1gxm_A Pectate lyase; mechanis 98.6 2E-08 6.7E-13 89.9 2.5 112 56-168 35-189 (332)
37 3prx_B Cobra venom factor; imm 98.5 1.9E-08 6.5E-13 108.4 0.0 193 7-218 1026-1250(1642)
38 2bb6_A TCII, TC II, transcobal 98.4 1.4E-06 4.6E-11 80.7 11.0 131 36-187 139-281 (414)
39 3sdr_A Alpha-bisabolene syntha 98.4 5.5E-06 1.9E-10 83.3 15.6 259 7-290 57-364 (817)
40 3p5p_A Taxadiene synthase; cla 98.4 4.9E-06 1.7E-10 83.2 14.6 254 6-290 10-312 (764)
41 3prx_B Cobra venom factor; imm 98.3 6E-08 2.1E-12 104.5 0.0 203 57-288 1035-1264(1642)
42 3s9v_A Abietadiene synthase, c 98.3 4.4E-05 1.5E-09 76.5 19.0 254 7-290 34-336 (785)
43 3pya_A ENT-copalyl diphosphate 98.0 0.00022 7.7E-09 70.6 18.1 248 6-290 11-311 (727)
44 2bb6_A TCII, TC II, transcobal 98.0 6.9E-05 2.4E-09 69.3 12.0 133 135-289 142-286 (414)
45 2pmv_A Gastric intrinsic facto 97.8 5.8E-05 2E-09 69.4 9.2 125 38-187 117-257 (399)
46 2pmv_A Gastric intrinsic facto 97.7 4.8E-05 1.6E-09 70.0 7.1 147 87-265 118-278 (399)
47 3p5p_A Taxadiene synthase; cla 96.6 0.061 2.1E-06 53.8 16.2 140 106-270 189-334 (764)
48 3s9v_A Abietadiene synthase, c 96.4 0.13 4.4E-06 51.6 17.1 136 109-269 218-357 (785)
49 3pya_A ENT-copalyl diphosphate 95.9 0.24 8.2E-06 49.2 16.1 135 109-269 193-331 (727)
50 3sdr_A Alpha-bisabolene syntha 94.6 0.036 1.2E-06 55.9 5.5 103 54-161 56-163 (817)
51 3k11_A Putative glycosyl hydro 78.5 26 0.0009 32.5 12.2 163 54-216 170-372 (445)
52 3k11_A Putative glycosyl hydro 69.8 66 0.0023 29.8 12.6 163 102-266 170-373 (445)
53 1wgn_A UBAP1, ubiquitin associ 47.4 28 0.00096 22.7 4.0 28 134-165 35-62 (63)
54 3pmm_A Putative cytoplasmic pr 38.1 71 0.0024 28.8 6.9 164 54-217 135-341 (382)
55 3pmm_A Putative cytoplasmic pr 34.5 1.1E+02 0.0037 27.5 7.5 69 102-170 265-342 (382)
56 3ren_A Glycosyl hydrolase, fam 33.5 43 0.0015 30.0 4.5 59 34-92 282-346 (350)
57 4ae4_A Ubiquitin-associated pr 29.9 64 0.0022 23.9 4.3 60 149-208 35-114 (118)
58 2dna_A Unnamed protein product 27.4 77 0.0026 21.0 3.8 17 149-165 47-63 (67)
59 3ren_A Glycosyl hydrolase, fam 25.3 1.9E+02 0.0065 25.7 7.2 144 30-176 166-334 (350)
60 2ip6_A PAPB, PEDB; immunity pr 23.5 79 0.0027 22.8 3.5 44 127-170 56-100 (112)
61 1vej_A Riken cDNA 4931431F19; 21.3 1.1E+02 0.0039 20.5 3.8 18 148-165 56-73 (74)
62 1nc5_A Hypothetical protein YT 21.2 1.7E+02 0.0058 26.0 6.3 65 103-167 244-324 (373)
No 1
>3dss_B Geranylgeranyl transferase type-2 subunit beta; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} SCOP: a.102.4.3 PDB: 1ltx_B* 3c72_B* 1dce_B 3dst_B* 3dsu_B* 3dsv_B* 3dsw_B* 3dsx_B* 3hxb_B* 3hxc_B* 3hxd_B* 3hxe_B* 3hxf_B* 3pz1_B* 3pz2_B* 3pz3_B* 4ehm_B* 4gts_B* 4gtt_B* 4gtv_B*
Probab=100.00 E-value=1.8e-77 Score=547.93 Aligned_cols=312 Identities=57% Similarity=1.135 Sum_probs=298.8
Q ss_pred ccccHHHHHHHHHHcccCCCCccccccccchhHHHHHHHHHHHhcCCCCccCHHHHHHHHHhccCCCCcccCCCCCCCch
Q 021286 2 GELAADKHVKYIISVEKKKDSFESVVMEHLRLNGAYWGLTTLDILGKLDAVDEEDVISWILKCQDESGGFAGNIGHDPHV 81 (314)
Q Consensus 2 ~~l~~~~~~~yl~~~~~~~g~~~~~~~~~~~~~~~~~al~~L~lLg~~~~~~~~~~~~~l~~~q~~dGGf~~~~~~~~~~ 81 (314)
.+|+++||++||+++.....++.++..|+++++.+||+|.+|++||..+.++++++++||++||++||||++.+++++|+
T Consensus 16 ~~l~~~~h~~y~~~~~~~~~~~~~~~~d~~r~~~~yw~l~~L~lLg~l~~~~r~~~i~~l~s~Q~~dGGF~g~~g~~~~l 95 (331)
T 3dss_B 16 DTLLLEKHADYIASYGSKKDDYEYCMSEYLRMSGVYWGLTVMDLMGQLHRMNKEEILVFIKSCQHECGGVSASIGHDPHL 95 (331)
T ss_dssp CSCCHHHHHHHHHHTTSSSCGGGSGGGGGGHHHHHHHHHHHHHHTTCGGGSCHHHHHHHHHHTBCTTSCBBSSTTSCBCH
T ss_pred hhhhHHHHHHHHHHhccCCCCccceeccccHHHHHHHHHHHHHHhCCCchhhHHHHHHHHhhhcCCCCCcCCCCCCCccH
Confidence 46899999999999876667788889999999999999999999998777789999999999999999999999999999
Q ss_pred hhhHHHHHHHHHhcCCCcccHHHHHHHHHhccCCCCCcccCCCCCcccchHHHHHHHHHHhCCCCccCHHHHHHHHHhcc
Q 021286 82 LYTLSAVQVLALFDKVDILDADKVSNYIVGLQNEDGSFSGDIWGEVDTRFSYIAICCLSILQRLDKINVDKAVEYIVSCK 161 (314)
Q Consensus 82 ~~T~~al~~L~~l~~~~~~~~~~~~~~l~~~Q~~dGgf~~~~~~~~d~~~ty~al~~l~ll~~~~~~~~~~~~~~l~~~q 161 (314)
.+||+|+++|.+++.++.++++++++||.++|++||||.+.++++.|+++||||+.+|.++|..+.++++++++||++||
T Consensus 96 ~~Ty~Al~~L~~l~~~~~id~~k~~~fL~~~Q~~DGsf~~~~~ge~d~~~ty~Al~~L~llg~~~~~~~~k~v~~L~s~Q 175 (331)
T 3dss_B 96 LYTLSAVQILTLYDSIHVINVDKVVAYVQSLQKEDGSFAGDIWGEIDTRFSFCAVATLALLGKLDAINVEKAIEFVLSCM 175 (331)
T ss_dssp HHHHHHHHHHHHTTCGGGSCHHHHHHHHHHTBCTTSCBBSSTTCCBCHHHHHHHHHHHHHHTCGGGSCHHHHHHHHHTTB
T ss_pred HHHHHHHHHHHHcCCccHHHHHHHHHHHhccCCCCCCEecccCCCCchHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhC
Confidence 99999999999999888899999999999999999999999899999999999999999999877789999999999999
Q ss_pred CCCCCCCCCCCCccchhhhHHHHHHHHHhhcCCcCCHHHHHHHHHccCcCCCcccCCCCCCCCchhHHHHHHHHHhhccC
Q 021286 162 NLDGGFGCTPGGESHSGQIFCCVGALAIAGALHHVDKDLLGWWLCERQVKSGGLNGRPEKLPDVCYSWWVLSSLIMIDRV 241 (314)
Q Consensus 162 ~~dGGf~~~p~~~s~~~~T~~al~~L~ll~~~~~~~~~~~~~~L~~~Q~~~GGf~~~~~~~~d~~yt~~~~~~L~~l~~~ 241 (314)
++||||+..|+.++|+++||||+++|.+++..+.++++++++||.++|.++|||+++|+|.+|+|||||++++|.++++.
T Consensus 176 ~~dGGfg~~pg~esh~~~T~~al~aL~llg~~~~~~~~~~~~wL~~~Q~~dGGf~gr~~k~~D~cys~w~l~~L~llg~~ 255 (331)
T 3dss_B 176 NFDGGFGCRPGSESHAGQIYCCTGFLAITSQLHQVNSDLLGWWLCERQLPSGGLNGRPEKLPDVCYSWWVLASLKIIGRL 255 (331)
T ss_dssp CTTSCBCSSTTCCCCHHHHHHHHHHHHHTTCGGGSCHHHHHHHHHTTBCTTSCBCSSTTCCCCHHHHHHHHHHHHHTTCG
T ss_pred cCCCCcCCCCCCCCcHHHHHHHHHHHHhccccchhhHHHHHHHHHHhCCCCCCcCCCCCCCCcchhHHHHHHHHHHcCCc
Confidence 99999999999999999999999999999998888999999999999999999999999999999999999999999998
Q ss_pred cccChHHHHHHHHhhcCCCCCCcCCCCCCCCCHHHHHHHhhhhhccCCCCCCCCCCcccCCHHHHHhccccC
Q 021286 242 HWINKDKLVKFILDCQDMENGGISDRPDDAVDVFHTYFGVAGLSLLEYPGLKPIDPAYALPVDVVNRIFFSK 313 (314)
Q Consensus 242 ~~~~~~~~~~~l~~~Q~~~~GGf~~~p~~~~d~~~T~~al~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~ 313 (314)
.++|.+++++||++||+.+.|||+++|++.||++||||+|++|+++++++|+++||+|+||+++++++.+..
T Consensus 256 ~~~~~~~~~~fil~cQ~~~~GGf~~~pg~~~d~~hT~~~l~~Ls~~g~~~l~~~~p~~~~~~~~~~~~~~~~ 327 (331)
T 3dss_B 256 HWIDREKLRSFILACQDEETGGFADRPGDMVDPFHTLFGIAGLSLLGEEQIKPVSPVFCMPEEVLQRVNVQP 327 (331)
T ss_dssp GGSCHHHHHHHHHHTBCTTTCCBCSSTTSCCBHHHHHHHHHHHHHTTCTTSCCBCTTTSSBHHHHHHHTCCC
T ss_pred chhhHHHHHHHHHHhcCCCCCCcCCCCCCCCCHHHHHHHHHHHHHcCCCCCCCCCccccCCHHHHHHhCCCh
Confidence 899999999999999994349999999999999999999999999999999999999999999999998865
No 2
>1n4q_B Geranyltransferase type-I beta subunit; protein geranylgeranyltransferase type-I, ggtase; HET: MGM GER; 2.40A {Rattus norvegicus} SCOP: a.102.4.3 PDB: 1n4p_B* 1n4r_B* 1n4s_B* 1s64_B* 1tnb_B* 1tno_B* 1tnu_B* 1tny_B* 1tnz_B*
Probab=100.00 E-value=1.8e-74 Score=534.48 Aligned_cols=304 Identities=32% Similarity=0.579 Sum_probs=282.5
Q ss_pred cccHHHHHHHHHHcccC-CCCccccccccchhHHHHHHHHHHHhcCCCCccCHHHHHHHHHhccC---------CCCccc
Q 021286 3 ELAADKHVKYIISVEKK-KDSFESVVMEHLRLNGAYWGLTTLDILGKLDAVDEEDVISWILKCQD---------ESGGFA 72 (314)
Q Consensus 3 ~l~~~~~~~yl~~~~~~-~g~~~~~~~~~~~~~~~~~al~~L~lLg~~~~~~~~~~~~~l~~~q~---------~dGGf~ 72 (314)
+|+++||++||+++.+. +.+ +...|++++|.+||+|++|++||..+..+++++++||++||+ ++|||+
T Consensus 19 ~l~~~~H~~y~~~~l~~lp~~--~~~~d~~r~~~~yw~l~~L~lLg~l~~~~~~~~i~wils~Q~~p~~~~~~~~~GGF~ 96 (377)
T 1n4q_B 19 DFLRDRHVRFFQRCLQVLPER--YSSLETSRLTIAFFALSGLDMLDSLDVVNKDDIIEWIYSLQVLPTEDRSNLDRCGFR 96 (377)
T ss_dssp CCCHHHHHHHHHHHHHEECGG--GGGGGGGHHHHHHHHHHHHHHTTCGGGSCHHHHHHHHHTTEECCCTTCTTGGGCEEC
T ss_pred ccCHHHHHHHHHHHhhcCCcc--ccccccchHHHHHHHHHHHHHhCCCCccCHHHHHHHHHHhcCCccccccCCCCCccC
Confidence 58999999999999865 444 456799999999999999999997656679999999999999 689999
Q ss_pred CCCCC-----------------CCchhhhHHHHHHHHHhc-CCCcccHHHHHHHHHhccCCCCCcccC-CCCCcccchHH
Q 021286 73 GNIGH-----------------DPHVLYTLSAVQVLALFD-KVDILDADKVSNYIVGLQNEDGSFSGD-IWGEVDTRFSY 133 (314)
Q Consensus 73 ~~~~~-----------------~~~~~~T~~al~~L~~l~-~~~~~~~~~~~~~l~~~Q~~dGgf~~~-~~~~~d~~~ty 133 (314)
++++. .+|+.+||+||++|.+++ .++.++++++++||+++|++||||.+. .+++.|+|+||
T Consensus 97 g~~~~~~p~~d~~~~~~~~~~d~~~v~~T~~Al~~L~~lg~~~~~id~~~~~~fL~~~Q~~DGSf~g~~~wGe~DirftY 176 (377)
T 1n4q_B 97 GSSYLGIPFNPSKNPGTAHPYDSGHIAMTYTGLSCLIILGDDLSRVDKEACLAGLRALQLEDGSFCAVPEGSENDMRFVY 176 (377)
T ss_dssp SSSTTCCCCCSSCSCCCCCTTCCCCHHHHHHHHHHHHHTTCCSTTSCHHHHHHHHHHHBCTTSCBCSSTTCCCCBHHHHH
T ss_pred CCcccCCChhhhccccccccCCCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHHhcCCCCCeeeccCCCcchhHHHH
Confidence 98754 489999999999999998 467889999999999999999999886 68999999999
Q ss_pred HHHHHHHHhCCCCccCHHHHHHHHHhccCCCCCCCCCCCCccchhhhHHHHHHHHHhhcCCcC----CHHHHHHHHHccC
Q 021286 134 IAICCLSILQRLDKINVDKAVEYIVSCKNLDGGFGCTPGGESHSGQIFCCVGALAIAGALHHV----DKDLLGWWLCERQ 209 (314)
Q Consensus 134 ~al~~l~ll~~~~~~~~~~~~~~l~~~q~~dGGf~~~p~~~s~~~~T~~al~~L~ll~~~~~~----~~~~~~~~L~~~Q 209 (314)
||++++.+++..+.++++++++||++||++|||||..|+.|+|+++||||+++|.+++..+.. +++++++||.++|
T Consensus 177 ~Al~~l~llg~~~~~~v~ka~~fL~scQn~DGGfGe~p~~ESh~g~T~cAlaaL~llg~~~~~~~~~~~~rli~wL~~rQ 256 (377)
T 1n4q_B 177 CASCICYMLNNWSGMDMKKAISYIRRSMSYDNGLAQGAGLESHGGSTFCGIASLCLMGKLEEVFSEKELNRIKRWCIMRQ 256 (377)
T ss_dssp HHHHHHHHTTCGGGSCHHHHHHHHHHTBCTTSSBBSSTTSCBCHHHHHHHHHHHHHHTCHHHHSCHHHHHHHHHHHHTTB
T ss_pred HHHHHHHHhcCCChHHHHHHHHHHHHhcCCCCCCCCCCCCCCchhHHHHHHHHHHHhcCcccccchhhHHHHHHHHHhcC
Confidence 999999999987788999999999999999999999999999999999999999999976543 6899999999999
Q ss_pred cCCCcccCCCCCCCCchhHHHHHHHHHhhccCcccChHHHHHHHHhhcCCCCCCcCCCCCCCCCHHHHHHHhhhhhccCC
Q 021286 210 VKSGGLNGRPEKLPDVCYSWWVLSSLIMIDRVHWINKDKLVKFILDCQDMENGGISDRPDDAVDVFHTYFGVAGLSLLEY 289 (314)
Q Consensus 210 ~~~GGf~~~~~~~~d~~yt~~~~~~L~~l~~~~~~~~~~~~~~l~~~Q~~~~GGf~~~p~~~~d~~~T~~al~~L~l~~~ 289 (314)
+|||+|||||.+|+|||||++++|.+|++.+++|.+++++||+.||++++|||+++|++.||+|||||+|++|+++++
T Consensus 257 --~gGf~GR~nK~~D~CYSfWv~~~l~iL~~~~~~d~~~l~~fil~cQ~~~~GGf~~~p~~~~D~~HT~~~LagLsl~~~ 334 (377)
T 1n4q_B 257 --QNGYHGRPNKPVDTCYSFWVGATLKLLKIFQYTNFEKNRNYILSTQDRLVGGFAKWPDSHPDALHAYFGICGLSLMEE 334 (377)
T ss_dssp --SSSBCSSTTSCCCTTHHHHHHHHHHHTTCGGGSCHHHHHHHHHTTBCTTTCSBCSSTTSCCBHHHHHHHHHHHHHTTC
T ss_pred --CCCcCCCCCcchhHHHHHHHHHHHHHhCCccccCHHHHHHHHHHHcCCCCCCcCCCCCCCCCHHHHHHHHHHHHhcCC
Confidence 899999999999999999999999999999999999999999999994489999999999999999999999999999
Q ss_pred CCCCCCCCcccCCHHHHHhcc
Q 021286 290 PGLKPIDPAYALPVDVVNRIF 310 (314)
Q Consensus 290 ~~l~~~~~~~~~~~~~~~~~~ 310 (314)
++|+++||+|+||++++++++
T Consensus 335 ~~l~~i~p~~~i~~~~~~~~~ 355 (377)
T 1n4q_B 335 SGICKVHPALNVSTRTSERLR 355 (377)
T ss_dssp TTCCCEETTTTEEHHHHHHHH
T ss_pred CCCCCCCCcccCCHHHHHHHH
Confidence 999999999999999999875
No 3
>3dra_B Geranylgeranyltransferase type I beta subunit; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=100.00 E-value=2.3e-74 Score=532.47 Aligned_cols=312 Identities=27% Similarity=0.418 Sum_probs=281.1
Q ss_pred CccccHHHHHHHHHHcccCCCCccccccccchhHHHHHHHHHHHhcCCC--CccCHHHHHHHHHhccCC----CCcccCC
Q 021286 1 MGELAADKHVKYIISVEKKKDSFESVVMEHLRLNGAYWGLTTLDILGKL--DAVDEEDVISWILKCQDE----SGGFAGN 74 (314)
Q Consensus 1 ~~~l~~~~~~~yl~~~~~~~g~~~~~~~~~~~~~~~~~al~~L~lLg~~--~~~~~~~~~~~l~~~q~~----dGGf~~~ 74 (314)
|.+|+++||++||+++.+. -+-.+...|++++|.+||+|++|++||.. ++.++++.++||++||.+ .|||++.
T Consensus 1 ~~~l~~~kHiky~~~~L~~-Lp~~~~s~D~~R~~l~Yw~l~~L~lLg~~~~~~~~~~~~i~~i~~~q~~~~~~~gGF~g~ 79 (390)
T 3dra_B 1 MNQLLINKHEKFFNRCLIG-LPSTAQSEDSNKLAIIYFCLHGLQLIQKFQFTNQELIYYRNFIINQFMIENNQIISFRST 79 (390)
T ss_dssp -CCCCHHHHHHHHHHHHHC-CCGGGGGGTTCHHHHHHHHHHHHHHTTCCCCCHHHHHHHHHHHHHHHEEECSSCEEECSS
T ss_pred CccccHHHHHHHHHHHHHh-CCcchhhcchhhHHHHHHHHHHHHHhCCCccchHHHHHHHHHHHHHhccccCCCCCcCCC
Confidence 6789999999999998763 23344567999999999999999999976 556788999999999765 3999998
Q ss_pred C-----C---CCCchhhhHHHHHHHHHhcC--CCcccHHHHHHHHHhccC---C-CCCcccCC-----------CCCccc
Q 021286 75 I-----G---HDPHVLYTLSAVQVLALFDK--VDILDADKVSNYIVGLQN---E-DGSFSGDI-----------WGEVDT 129 (314)
Q Consensus 75 ~-----~---~~~~~~~T~~al~~L~~l~~--~~~~~~~~~~~~l~~~Q~---~-dGgf~~~~-----------~~~~d~ 129 (314)
+ + +.+|+.+||+|+++|.+++. ++.+|++++++||.++|+ + ||||...+ +++.|+
T Consensus 80 ~~~~~~g~~~~~~hl~~Ty~Al~~L~ilg~~~~~~vdr~~i~~~l~~lQ~~~~~~dGsF~~~~~~~~~dg~~~~~ge~D~ 159 (390)
T 3dra_B 80 HYFQKTNQKYDCPNLSSTLFALYNLLILKSPYHTIINRKKIMNFLCKCQVKDGINKGGFVPTLYYNEENGDYKQYGEPDL 159 (390)
T ss_dssp GGGGGSCTTTSCCBHHHHHHHHHHHHHTTCCGGGTCCHHHHHHHHHHHBCCSSTTTTCBCSEEEEETTTTEEEEESCCCH
T ss_pred ccCCCCCCccCcccHHHHHHHHHHHHHhCchhhccccHHHHHHHHHHHhCCCCCCCCceeeeccccccccccccCCcchH
Confidence 5 5 57999999999999999986 378999999999999999 7 89998543 689999
Q ss_pred chHHHHHHHHHHhCCCC-------------ccCHHHHHHHHHhccCCCCCCCCCCCCccchhhhHHHHHHHHHhhcCCcC
Q 021286 130 RFSYIAICCLSILQRLD-------------KINVDKAVEYIVSCKNLDGGFGCTPGGESHSGQIFCCVGALAIAGALHHV 196 (314)
Q Consensus 130 ~~ty~al~~l~ll~~~~-------------~~~~~~~~~~l~~~q~~dGGf~~~p~~~s~~~~T~~al~~L~ll~~~~~~ 196 (314)
|++|||++++.+|+... .++++++++||++||++||||+..|+.|+|+++|||||++|+++++. ..
T Consensus 160 R~~YcA~~i~~lL~~~~~~~~~~~~~~~~~~id~~~~~~~I~~cq~ydGGfg~~p~~EsH~G~TfCalaaL~lL~~~-~~ 238 (390)
T 3dra_B 160 RVCYMALLIRHLMKYDDNNNNNNREDSNETDIDLISLQQFILDRININGGFSSTIMDESHLGFTFCAIASLKLLNYP-LE 238 (390)
T ss_dssp HHHHHHHHHHHHTTCC-------------CCCCHHHHHHHHHTTBCTTSCBCSSTTSCCCHHHHHHHHHHHHHTTCC-GG
T ss_pred HHHHHHHHHHHHhCCCcccccccccccccccccHHHHHHHHHHhcCCCCCcCCCCCcccccchhHHHHHHHHHhCcc-cc
Confidence 99999999999999876 57899999999999999999999999999999999999999999987 46
Q ss_pred CHHHHHHHHHccCc----------------------------CCCcccCCCCCCCCchhHHHHHHHHHhhcc--CcccCh
Q 021286 197 DKDLLGWWLCERQV----------------------------KSGGLNGRPEKLPDVCYSWWVLSSLIMIDR--VHWINK 246 (314)
Q Consensus 197 ~~~~~~~~L~~~Q~----------------------------~~GGf~~~~~~~~d~~yt~~~~~~L~~l~~--~~~~~~ 246 (314)
+++++++||.+||. ++|||+|||||.+|+|||||++++|.+|++ .+++|.
T Consensus 239 d~~~l~~WL~~RQ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GGFnGR~nKl~D~CYS~Wv~~sL~iL~~~~~~l~d~ 318 (390)
T 3dra_B 239 KLKSTKEWLIHRQVDYPENLYPKDGNGDGNGNGDNYEYYRNIDIGGFNGRENKLSDTCYSWWCTGSLYNIDVNFIKLVDL 318 (390)
T ss_dssp GCHHHHHHHHTTBCCCCTTTCC------------CCTTCCGGGTTSBBSSTTCCBCTHHHHHHHHHHHHHCGGGGGGSCH
T ss_pred cHHHHHHHHHHcCccccccccccccccccccccccccccccccCCCccCCCCCccchhHHHHHHHHHHHhccccccccCH
Confidence 88999999999997 479999999999999999999999999995 568999
Q ss_pred HHHHHHHHhhcCCC-CCCcCCCCCCCCCHHHHHHHhhhhhccCC--CCCCCCCCcccCCHHHHHhccccCC
Q 021286 247 DKLVKFILDCQDME-NGGISDRPDDAVDVFHTYFGVAGLSLLEY--PGLKPIDPAYALPVDVVNRIFFSKK 314 (314)
Q Consensus 247 ~~~~~~l~~~Q~~~-~GGf~~~p~~~~d~~~T~~al~~L~l~~~--~~l~~~~~~~~~~~~~~~~~~~~~~ 314 (314)
+++++||+.||+.+ .|||+++|++.||+|||||+|++|+++++ ++|+++||+|+||++++++++=++|
T Consensus 319 ~~l~~yiL~c~Q~~~~GGf~d~Pg~~pD~yHT~~gLagLsl~~~~~~~l~~vdp~~~ip~~~~~~~~~~~~ 389 (390)
T 3dra_B 319 NKAEDYLLNKTQNQLFGGFGRDPDSTPDPMHSYLALASLSLWNHEKFALQEINPILTITKESYQFFKEEIK 389 (390)
T ss_dssp HHHHHHHHHTTBCTTTCSBCSSTTSCCCHHHHHHHHHHHHHHHHHHHTCCCEETTTTEEHHHHHHHHHHCC
T ss_pred HHHHHHHHHhccCCCCCCcCCCCCCCCchHHHHHHHHHHHHcCCccCCCceeCchhcCCHHHHHHHHHhhc
Confidence 99999999985534 89999999999999999999999999987 8999999999999999999986654
No 4
>2h6f_B Protein farnesyltransferase beta subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.102.4.3 PDB: 1jcq_B* 1ld7_B* 1mzc_B* 1s63_B* 1sa4_B* 1tn6_B* 2f0y_B* 1ld8_B* 2iej_B* 3e37_B* 2h6h_B* 2h6g_B* 2h6i_B* 1o1t_B* 1o1s_B* 1o1r_B* 3eu5_B* 3pz4_B* 3e33_B* 1d8e_B* ...
Probab=100.00 E-value=8e-71 Score=519.16 Aligned_cols=305 Identities=32% Similarity=0.593 Sum_probs=282.0
Q ss_pred cccHHHHHHHHHHc-ccCCCCccccccccchhHHHHHHHHHHHhcCCC-CccCHHHHHHHHHhccCCCCcccCCCCCCCc
Q 021286 3 ELAADKHVKYIISV-EKKKDSFESVVMEHLRLNGAYWGLTTLDILGKL-DAVDEEDVISWILKCQDESGGFAGNIGHDPH 80 (314)
Q Consensus 3 ~l~~~~~~~yl~~~-~~~~g~~~~~~~~~~~~~~~~~al~~L~lLg~~-~~~~~~~~~~~l~~~q~~dGGf~~~~~~~~~ 80 (314)
+|++++|++||+++ |+.+|+|... |..+++.+||+|.+|++||.. +.+.++++++||++||++||||++.+.+.+|
T Consensus 72 ~l~~~~hi~~l~~~lq~~~gg~~a~--D~~r~~l~y~~l~aL~lLg~~~~~~~~~r~v~~l~s~Q~~dGGf~g~~~~~~~ 149 (437)
T 2h6f_B 72 VLQREKHFHYLKRGLRQLTDAYECL--DASRPWLCYWILHSLELLDEPIPQIVATDVCQFLELCQSPEGGFGGGPGQYPH 149 (437)
T ss_dssp CCCHHHHHHHHHHHTTEECGGGGGG--TTCHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHBCTTSSBBSSTTCCBC
T ss_pred cccHHHHHHHHHHcCCCCCCCcccc--cCCCccHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhCCCCCCcCCccCCCcc
Confidence 58899999999999 7889998754 566889999999999999964 4456899999999999999999999988999
Q ss_pred hhhhHHHHHHHHHhcCC---CcccHHHHHHHHHhccCCCCCcccCCCCCcccchHHHHHHHHHHhCCCCccCHHHHHHHH
Q 021286 81 VLYTLSAVQVLALFDKV---DILDADKVSNYIVGLQNEDGSFSGDIWGEVDTRFSYIAICCLSILQRLDKINVDKAVEYI 157 (314)
Q Consensus 81 ~~~T~~al~~L~~l~~~---~~~~~~~~~~~l~~~Q~~dGgf~~~~~~~~d~~~ty~al~~l~ll~~~~~~~~~~~~~~l 157 (314)
+..|++|+++|.+++.. +.++++++++||+++|++||||.+.++++.|+++||+|++++.++|..+...++++++||
T Consensus 150 i~~T~~Al~aL~~lg~~~~~~~i~i~kav~~L~s~Q~~DGsf~~~~~Ge~d~~~ty~A~~~L~llg~~~~~~v~k~~~~L 229 (437)
T 2h6f_B 150 LAPTYAAVNALCIIGTEEAYDIINREKLLQYLYSLKQPDGSFLMHVGGEVDVRSAYCAASVASLTNIITPDLFEGTAEWI 229 (437)
T ss_dssp HHHHHHHHHHHHHHCCHHHHTTSCHHHHHHHHHTTBCTTSCBBSSTTCCBSHHHHHHHHHHHHHTTCCCTTTTTTHHHHH
T ss_pred hhHHHHHHHHHHHhCCcccccchHHHHHHHHHHHhCCCCCCeeecCCCCccchhHHHHHHHHHHhCCCChHHHHHHHHHH
Confidence 99999999999999863 668899999999999999999999889999999999999999999987777889999999
Q ss_pred HhccCCCCCCCCCCCCccchhhhHHHHHHHHHhhcCCcCCHHHHHHHHHccCc-CCCcccCCCCCCCCchhHHHHHHHHH
Q 021286 158 VSCKNLDGGFGCTPGGESHSGQIFCCVGALAIAGALHHVDKDLLGWWLCERQV-KSGGLNGRPEKLPDVCYSWWVLSSLI 236 (314)
Q Consensus 158 ~~~q~~dGGf~~~p~~~s~~~~T~~al~~L~ll~~~~~~~~~~~~~~L~~~Q~-~~GGf~~~~~~~~d~~yt~~~~~~L~ 236 (314)
++||++||||+..|+.++|+++||||+++|.++|+.+..+++++++||++||. ++|||++||||.+|+|||||++++|.
T Consensus 230 ~s~Q~~DGGwg~~pg~eSh~~~T~~Al~aL~~lg~~~~~~~~rl~~wL~~rQ~~~~GGf~gRp~K~~D~cYSfw~~a~L~ 309 (437)
T 2h6f_B 230 ARCQNWEGGIGGVPGMEAHGGYTFCGLAALVILKRERSLNLKSLLQWVTSRQMRFEGGFQGRCNKLVDGCYSFWQAGLLP 309 (437)
T ss_dssp HHHBCTTSSBCSSTTSCCCHHHHHHHHHHHHHHTCGGGSCHHHHHHHHHHTBCTTTCSBBSSTTSCBCTTHHHHTTTHHH
T ss_pred HHccCCCCCcCCCCCCCCCccHHHHHHHHHHHcCCCCcccHHHHHHHHHhcCCCCCCCccCCCCCccchHHHHHHHHHHH
Confidence 99999999999999999999999999999999999888899999999999998 89999999999999999999999999
Q ss_pred hhccC-------------cccChHHHHHHHHh-hcCCCCCCcCCCCCCCCCHHHHHHHhhhhhccCC-------------
Q 021286 237 MIDRV-------------HWINKDKLVKFILD-CQDMENGGISDRPDDAVDVFHTYFGVAGLSLLEY------------- 289 (314)
Q Consensus 237 ~l~~~-------------~~~~~~~~~~~l~~-~Q~~~~GGf~~~p~~~~d~~~T~~al~~L~l~~~------------- 289 (314)
+|+.. .++|.+++++||+. ||+ ++|||+++|++.||+|||||+|++|+++++
T Consensus 310 lL~~~~~~~~~~~~~~~~~l~d~~~l~~yIL~~~Q~-~~GGf~d~Pg~~~D~yHT~y~L~gLsl~~~~~~~~~~~~~~~~ 388 (437)
T 2h6f_B 310 LLHRALHAQGDPALSMSHWMFHQQALQEYILMCCQC-PAGGLLDKPGKSRDFYHTCYCLSGLSIAQHFGSGAMLHDVVLG 388 (437)
T ss_dssp HHHHHHHHTTCTTCCSSCCSSCHHHHHHHHHHHSBC-TTSCBCSSTTSCCCHHHHHHHHHHHHHHHEEEETTEEEECCCS
T ss_pred HHhhhhhcccccccccccccCCHHHHHHHHHHHccC-CCCCccCCCCCCCCHHHHHHHHHHHHHhccccccccccccccC
Confidence 99753 15889999999998 566 799999999999999999999999999985
Q ss_pred ---CCCCCCCCcccCCHHHHHhcc
Q 021286 290 ---PGLKPIDPAYALPVDVVNRIF 310 (314)
Q Consensus 290 ---~~l~~~~~~~~~~~~~~~~~~ 310 (314)
..|.++||+|+||+++|++++
T Consensus 389 ~~~~~l~~i~p~~~i~~~~~~~~~ 412 (437)
T 2h6f_B 389 VPENALQPTHPVYNIGPDKVIQAT 412 (437)
T ss_dssp SGGGCCCCCCTTTSSCHHHHHHHH
T ss_pred CcccCccccCCcccCCHHHHHHHH
Confidence 478999999999999998875
No 5
>3q7a_B Farnesyltransferase beta subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_B* 3q78_B* 3q79_B* 3q75_B* 3q7f_B* 3sfx_B* 3sfy_B*
Probab=100.00 E-value=1.5e-70 Score=517.96 Aligned_cols=285 Identities=27% Similarity=0.489 Sum_probs=260.3
Q ss_pred cccHHHHHHHHHHcccCCCCccccccccchhHHHHHHHHHHHhcCC-CCccCHHHHHHHHHhccCCCCcccCCC--CCCC
Q 021286 3 ELAADKHVKYIISVEKKKDSFESVVMEHLRLNGAYWGLTTLDILGK-LDAVDEEDVISWILKCQDESGGFAGNI--GHDP 79 (314)
Q Consensus 3 ~l~~~~~~~yl~~~~~~~g~~~~~~~~~~~~~~~~~al~~L~lLg~-~~~~~~~~~~~~l~~~q~~dGGf~~~~--~~~~ 79 (314)
+|++++|++||+++... .+..+...|.+++|.+||+|++|++||. .+.+.++++++||++||+++|||++.+ ++.+
T Consensus 60 ~L~~~~Hi~yl~~~L~~-LP~~y~~~Dasr~wl~Yw~l~aL~LLg~~ld~~~~~~~I~~Ils~Q~~dGGFgg~p~~~~~~ 138 (520)
T 3q7a_B 60 GLRKQEHTQFLASSFFQ-LPGKFVSLDASRPWLVFWTVHSLDLLGVALDQGTKDRVVSTLLHFLSPKGGFGGGPANSQIP 138 (520)
T ss_dssp CCCHHHHHHHHHHHHSC-BCGGGGGGGGGHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHTTBCTTSSBCSSCTTTSCC
T ss_pred ccCHHHHHHHHHHHhhh-CChhhhhcccchHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCCCCCCCCCCCCCCCC
Confidence 69999999999999843 3344566899999999999999999994 455678999999999999999999999 8999
Q ss_pred chhhhHHHHHHHHHhcC------CCccc--HHHHHHHHHhccCCCCCcccCCCCCcccchHHHHHHHHHHhCCCCccCHH
Q 021286 80 HVLYTLSAVQVLALFDK------VDILD--ADKVSNYIVGLQNEDGSFSGDIWGEVDTRFSYIAICCLSILQRLDKINVD 151 (314)
Q Consensus 80 ~~~~T~~al~~L~~l~~------~~~~~--~~~~~~~l~~~Q~~dGgf~~~~~~~~d~~~ty~al~~l~ll~~~~~~~~~ 151 (314)
|+.+||+||++|.+++. ++.+| ++++++||.++|++||||.+..+++.|+++||||+.++.++|..+.++++
T Consensus 139 hla~TysAV~aL~ilg~~~p~~~~~~Id~~r~k~v~fL~slQ~~DGSF~g~~wGe~Dir~TY~Al~~L~lLg~~~~~~v~ 218 (520)
T 3q7a_B 139 HLLPTYASVCSLAIAGNDSSTGGWKDLAAARQSIYEFFMRCKRPDGGFVVCEGGEVDVRGTYCLLVVATLLDIITPELLH 218 (520)
T ss_dssp CHHHHHHHHHHHHHHCBSSTTSBHHHHHHTHHHHHHHHHHHBCTTSCBBSSTTCCBCHHHHHHHHHHHHHHTCCCHHHHT
T ss_pred cHHHHHHHHHHHHHhCccccchhhhhhhhHHHHHHHHHHHHhCCCCCEecCCCCCchHHHHHHHHHHHHHcCCCChHHHH
Confidence 99999999999999985 34677 99999999999999999999888999999999999999999987778899
Q ss_pred HHHHHHHhccCCCCCCCC-----------------------CCCCccchhhhHHHHHHHHHhhcC------CcCCHHHHH
Q 021286 152 KAVEYIVSCKNLDGGFGC-----------------------TPGGESHSGQIFCCVGALAIAGAL------HHVDKDLLG 202 (314)
Q Consensus 152 ~~~~~l~~~q~~dGGf~~-----------------------~p~~~s~~~~T~~al~~L~ll~~~------~~~~~~~~~ 202 (314)
++++||++||++|||||. .|+.|+|+++|||||++|++++.. +.++.++++
T Consensus 219 kav~fI~scQn~DGGfGe~s~~~~~~~~~~~~~~~~rp~~~~Pg~EaHgGyTfCalAaL~lL~~l~~~~~~~~~d~~~l~ 298 (520)
T 3q7a_B 219 NVDKFVSACQTYEGGFACASFPFPSVVPSTSAFPTSEPSCRVSMAEAHGGYTSCSLNSHFLLTSVPLPSFPLSIDANAAL 298 (520)
T ss_dssp THHHHHHTTBCTTSSBCSCEEEEC------------CCSEEEECSCCCHHHHHHHHHHHHHHHTSCCTTCSCCCCHHHHH
T ss_pred HHHHHHHHhcCCCCCccCccccccccccccccccccccccCCCCCccchhHHHHHHHHHHHhccccccccccccCHHHHH
Confidence 999999999999999999 689999999999999999999986 357899999
Q ss_pred HHHHccCc---CCCcccCCCCCCCCchhHHHHHHHHHhhccC--------------------------------cccChH
Q 021286 203 WWLCERQV---KSGGLNGRPEKLPDVCYSWWVLSSLIMIDRV--------------------------------HWINKD 247 (314)
Q Consensus 203 ~~L~~~Q~---~~GGf~~~~~~~~d~~yt~~~~~~L~~l~~~--------------------------------~~~~~~ 247 (314)
+||.+||. ++|||+|||||.+|+||+||++++|.+|+.. .++|.+
T Consensus 299 ~WL~~RQ~~~~e~GGF~GR~NKlvD~CYSfWvggsl~iL~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~l~d~~ 378 (520)
T 3q7a_B 299 RWTVLQQGEPIEGGGFRGRTNKLVDGCYSWWVGGGAPVAEELVRREKSRKVKKSRIEVFEEEKEGDWEDVPPIPPIFNRV 378 (520)
T ss_dssp HHHHHTBCCGGGTTCBBSSTTSCBCTTHHHHTGGGHHHHHHHHHHHHHHHC---------------------CCCSSCHH
T ss_pred HHHHHhCCcccCCCcccCCCCCCCchhhhhHHHHHHHHHHHHhhcccccccccccccccccccccccccccccccccCHH
Confidence 99999996 4699999999999999999999999999863 247899
Q ss_pred HHHHHHH-hhcCCCC---CCcCCCCCCCCCHHHHHHHhhhhhccCC
Q 021286 248 KLVKFIL-DCQDMEN---GGISDRPDDAVDVFHTYFGVAGLSLLEY 289 (314)
Q Consensus 248 ~~~~~l~-~~Q~~~~---GGf~~~p~~~~d~~~T~~al~~L~l~~~ 289 (314)
++.+||+ .||+ .. |||+++|++.||+|||||+|++|+++++
T Consensus 379 ~L~~yIL~~~Q~-~~~~~GGf~DkPg~~pD~yHT~y~LaGLSl~qh 423 (520)
T 3q7a_B 379 ALQEFTLVAAQQ-DPGSTGGLRDKPGKRPDQYHTCNNLSGLSIAQH 423 (520)
T ss_dssp HHHHHHHHTTBC-CTTSSCCBCSSTTSCCCHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHccC-CCCCCCCCCCCCCCCcchhHHHHHHHHHHHhCC
Confidence 9999998 5898 55 9999999999999999999999999964
No 6
>3dss_B Geranylgeranyl transferase type-2 subunit beta; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} SCOP: a.102.4.3 PDB: 1ltx_B* 3c72_B* 1dce_B 3dst_B* 3dsu_B* 3dsv_B* 3dsw_B* 3dsx_B* 3hxb_B* 3hxc_B* 3hxd_B* 3hxe_B* 3hxf_B* 3pz1_B* 3pz2_B* 3pz3_B* 4ehm_B* 4gts_B* 4gtt_B* 4gtv_B*
Probab=100.00 E-value=4.3e-48 Score=353.69 Aligned_cols=240 Identities=20% Similarity=0.338 Sum_probs=227.1
Q ss_pred ccccHHHHHHHHHHcccCCCCccccccccchhHHHHHHHHHHHhcCCCCccCHHHHHHHHHhccCCCCcccCCCCCCCch
Q 021286 2 GELAADKHVKYIISVEKKKDSFESVVMEHLRLNGAYWGLTTLDILGKLDAVDEEDVISWILKCQDESGGFAGNIGHDPHV 81 (314)
Q Consensus 2 ~~l~~~~~~~yl~~~~~~~g~~~~~~~~~~~~~~~~~al~~L~lLg~~~~~~~~~~~~~l~~~q~~dGGf~~~~~~~~~~ 81 (314)
.+++++++++||.++|++||||........++..||.|+.+|.+++..+.++++++++||.++|++||||++.+..++|+
T Consensus 64 ~~~~r~~~i~~l~s~Q~~dGGF~g~~g~~~~l~~Ty~Al~~L~~l~~~~~id~~k~~~fL~~~Q~~DGsf~~~~~ge~d~ 143 (331)
T 3dss_B 64 HRMNKEEILVFIKSCQHECGGVSASIGHDPHLLYTLSAVQILTLYDSIHVINVDKVVAYVQSLQKEDGSFAGDIWGEIDT 143 (331)
T ss_dssp GGSCHHHHHHHHHHTBCTTSCBBSSTTSCBCHHHHHHHHHHHHHTTCGGGSCHHHHHHHHHHTBCTTSCBBSSTTCCBCH
T ss_pred chhhHHHHHHHHhhhcCCCCCcCCCCCCCccHHHHHHHHHHHHHcCCccHHHHHHHHHHHhccCCCCCCEecccCCCCch
Confidence 45789999999999999999998776667899999999999999997667789999999999999999999988788999
Q ss_pred hhhHHHHHHHHHhcCCCcccHHHHHHHHHhccCCCCCcccCCCCCcccchHHHHHHHHHHhCCCCccCHHHHHHHHHhcc
Q 021286 82 LYTLSAVQVLALFDKVDILDADKVSNYIVGLQNEDGSFSGDIWGEVDTRFSYIAICCLSILQRLDKINVDKAVEYIVSCK 161 (314)
Q Consensus 82 ~~T~~al~~L~~l~~~~~~~~~~~~~~l~~~Q~~dGgf~~~~~~~~d~~~ty~al~~l~ll~~~~~~~~~~~~~~l~~~q 161 (314)
..||+|+.+|.+++..+.++++++++||.++|++||||+..|+.++|..+||||+.+|.+++..+.++++++++||.++|
T Consensus 144 ~~ty~Al~~L~llg~~~~~~~~k~v~~L~s~Q~~dGGfg~~pg~esh~~~T~~al~aL~llg~~~~~~~~~~~~wL~~~Q 223 (331)
T 3dss_B 144 RFSFCAVATLALLGKLDAINVEKAIEFVLSCMNFDGGFGCRPGSESHAGQIYCCTGFLAITSQLHQVNSDLLGWWLCERQ 223 (331)
T ss_dssp HHHHHHHHHHHHHTCGGGSCHHHHHHHHHTTBCTTSCBCSSTTCCCCHHHHHHHHHHHHHTTCGGGSCHHHHHHHHHTTB
T ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCcCCCCcCCCCCCCCcHHHHHHHHHHHHhccccchhhHHHHHHHHHHhC
Confidence 99999999999999877788999999999999999999999999999999999999999999877789999999999999
Q ss_pred CCCCCCCCCCCCccchhhhHHHHHHHHHhhcCCcCCHHHHHHHHHccCcCC-CcccCCCCCCCCchhHHHHHHHHHhhcc
Q 021286 162 NLDGGFGCTPGGESHSGQIFCCVGALAIAGALHHVDKDLLGWWLCERQVKS-GGLNGRPEKLPDVCYSWWVLSSLIMIDR 240 (314)
Q Consensus 162 ~~dGGf~~~p~~~s~~~~T~~al~~L~ll~~~~~~~~~~~~~~L~~~Q~~~-GGf~~~~~~~~d~~yt~~~~~~L~~l~~ 240 (314)
++||||+..|+.++|.++|||++++|.++++.+.++.+++++||+++|+.+ |||+.+|++.+|.++|||++++|++++.
T Consensus 224 ~~dGGf~gr~~k~~D~cys~w~l~~L~llg~~~~~~~~~~~~fil~cQ~~~~GGf~~~pg~~~d~~hT~~~l~~Ls~~g~ 303 (331)
T 3dss_B 224 LPSGGLNGRPEKLPDVCYSWWVLASLKIIGRLHWIDREKLRSFILACQDEETGGFADRPGDMVDPFHTLFGIAGLSLLGE 303 (331)
T ss_dssp CTTSCBCSSTTCCCCHHHHHHHHHHHHHTTCGGGSCHHHHHHHHHHTBCTTTCCBCSSTTSCCBHHHHHHHHHHHHHTTC
T ss_pred CCCCCcCCCCCCCCcchhHHHHHHHHHHcCCcchhhHHHHHHHHHHhcCCCCCCcCCCCCCCCCHHHHHHHHHHHHHcCC
Confidence 999999999999999999999999999999888889999999999999987 9999999999999999999999999997
Q ss_pred C
Q 021286 241 V 241 (314)
Q Consensus 241 ~ 241 (314)
.
T Consensus 304 ~ 304 (331)
T 3dss_B 304 E 304 (331)
T ss_dssp T
T ss_pred C
Confidence 5
No 7
>2h6f_B Protein farnesyltransferase beta subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.102.4.3 PDB: 1jcq_B* 1ld7_B* 1mzc_B* 1s63_B* 1sa4_B* 1tn6_B* 2f0y_B* 1ld8_B* 2iej_B* 3e37_B* 2h6h_B* 2h6g_B* 2h6i_B* 1o1t_B* 1o1s_B* 1o1r_B* 3eu5_B* 3pz4_B* 3e33_B* 1d8e_B* ...
Probab=100.00 E-value=5.6e-45 Score=343.25 Aligned_cols=237 Identities=21% Similarity=0.315 Sum_probs=218.4
Q ss_pred ccCHHHHHHHHHhc-cCCCCcccCCCCCCCchhhhHHHHHHHHHhcC-CCcccHHHHHHHHHhccCCCCCcccCCCCCcc
Q 021286 51 AVDEEDVISWILKC-QDESGGFAGNIGHDPHVLYTLSAVQVLALFDK-VDILDADKVSNYIVGLQNEDGSFSGDIWGEVD 128 (314)
Q Consensus 51 ~~~~~~~~~~l~~~-q~~dGGf~~~~~~~~~~~~T~~al~~L~~l~~-~~~~~~~~~~~~l~~~Q~~dGgf~~~~~~~~d 128 (314)
...++++++||++| |+.+|||+..... +...+|+++.+|.+|+. .+..+++++++||.++|++||||.+.+++.++
T Consensus 72 ~l~~~~hi~~l~~~lq~~~gg~~a~D~~--r~~l~y~~l~aL~lLg~~~~~~~~~r~v~~l~s~Q~~dGGf~g~~~~~~~ 149 (437)
T 2h6f_B 72 VLQREKHFHYLKRGLRQLTDAYECLDAS--RPWLCYWILHSLELLDEPIPQIVATDVCQFLELCQSPEGGFGGGPGQYPH 149 (437)
T ss_dssp CCCHHHHHHHHHHHTTEECGGGGGGTTC--HHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHBCTTSSBBSSTTCCBC
T ss_pred cccHHHHHHHHHHcCCCCCCCcccccCC--CccHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhCCCCCCcCCccCCCcc
Confidence 45789999999999 8999999988764 45568999999999995 35557899999999999999999998888899
Q ss_pred cchHHHHHHHHHHhCCC---CccCHHHHHHHHHhccCCCCCCCCCCCCccchhhhHHHHHHHHHhhcCCcCCHHHHHHHH
Q 021286 129 TRFSYIAICCLSILQRL---DKINVDKAVEYIVSCKNLDGGFGCTPGGESHSGQIFCCVGALAIAGALHHVDKDLLGWWL 205 (314)
Q Consensus 129 ~~~ty~al~~l~ll~~~---~~~~~~~~~~~l~~~q~~dGGf~~~p~~~s~~~~T~~al~~L~ll~~~~~~~~~~~~~~L 205 (314)
+..||+|+.+|.++|.. +.++++++++||+++|++||||+..++.++|.+.||||+++|.+++..+...++++++||
T Consensus 150 i~~T~~Al~aL~~lg~~~~~~~i~i~kav~~L~s~Q~~DGsf~~~~~Ge~d~~~ty~A~~~L~llg~~~~~~v~k~~~~L 229 (437)
T 2h6f_B 150 LAPTYAAVNALCIIGTEEAYDIINREKLLQYLYSLKQPDGSFLMHVGGEVDVRSAYCAASVASLTNIITPDLFEGTAEWI 229 (437)
T ss_dssp HHHHHHHHHHHHHHCCHHHHTTSCHHHHHHHHHTTBCTTSCBBSSTTCCBSHHHHHHHHHHHHHTTCCCTTTTTTHHHHH
T ss_pred hhHHHHHHHHHHHhCCcccccchHHHHHHHHHHHhCCCCCCeeecCCCCccchhHHHHHHHHHHhCCCChHHHHHHHHHH
Confidence 99999999999999863 457899999999999999999999889999999999999999999987767789999999
Q ss_pred HccCcCCCcccCCCCCCCCchhHHHHHHHHHhhccCcccChHHHHHHHHhhcCCCCCCcCCCCCCCCCHHHHHHHhhhhh
Q 021286 206 CERQVKSGGLNGRPEKLPDVCYSWWVLSSLIMIDRVHWINKDKLVKFILDCQDMENGGISDRPDDAVDVFHTYFGVAGLS 285 (314)
Q Consensus 206 ~~~Q~~~GGf~~~~~~~~d~~yt~~~~~~L~~l~~~~~~~~~~~~~~l~~~Q~~~~GGf~~~p~~~~d~~~T~~al~~L~ 285 (314)
+++|+.||||+.+|++.++.+||||++++|.++++.++++.+++++||.+||.+++|||+++|++.+|++||||++++|.
T Consensus 230 ~s~Q~~DGGwg~~pg~eSh~~~T~~Al~aL~~lg~~~~~~~~rl~~wL~~rQ~~~~GGf~gRp~K~~D~cYSfw~~a~L~ 309 (437)
T 2h6f_B 230 ARCQNWEGGIGGVPGMEAHGGYTFCGLAALVILKRERSLNLKSLLQWVTSRQMRFEGGFQGRCNKLVDGCYSFWQAGLLP 309 (437)
T ss_dssp HHHBCTTSSBCSSTTSCCCHHHHHHHHHHHHHHTCGGGSCHHHHHHHHHHTBCTTTCSBBSSTTSCBCTTHHHHTTTHHH
T ss_pred HHccCCCCCcCCCCCCCCCccHHHHHHHHHHHcCCCCcccHHHHHHHHHhcCCCCCCCccCCCCCccchHHHHHHHHHHH
Confidence 99999999999999999999999999999999999888999999999999998668999999999999999999999999
Q ss_pred ccCC
Q 021286 286 LLEY 289 (314)
Q Consensus 286 l~~~ 289 (314)
+++.
T Consensus 310 lL~~ 313 (437)
T 2h6f_B 310 LLHR 313 (437)
T ss_dssp HHHH
T ss_pred HHhh
Confidence 9964
No 8
>1n4q_B Geranyltransferase type-I beta subunit; protein geranylgeranyltransferase type-I, ggtase; HET: MGM GER; 2.40A {Rattus norvegicus} SCOP: a.102.4.3 PDB: 1n4p_B* 1n4r_B* 1n4s_B* 1s64_B* 1tnb_B* 1tno_B* 1tnu_B* 1tny_B* 1tnz_B*
Probab=100.00 E-value=4.5e-41 Score=311.13 Aligned_cols=253 Identities=17% Similarity=0.284 Sum_probs=224.3
Q ss_pred ccccHHHHHHHHHHccc---------CCCCcccccc-----------------ccchhHHHHHHHHHHHhcCC-CCccCH
Q 021286 2 GELAADKHVKYIISVEK---------KKDSFESVVM-----------------EHLRLNGAYWGLTTLDILGK-LDAVDE 54 (314)
Q Consensus 2 ~~l~~~~~~~yl~~~~~---------~~g~~~~~~~-----------------~~~~~~~~~~al~~L~lLg~-~~~~~~ 54 (314)
++++++++++||.++|+ ++|||..+.. |..++..||.||.+|.++|. .+.+++
T Consensus 65 ~~~~~~~~i~wils~Q~~p~~~~~~~~~GGF~g~~~~~~p~~d~~~~~~~~~~d~~~v~~T~~Al~~L~~lg~~~~~id~ 144 (377)
T 1n4q_B 65 DVVNKDDIIEWIYSLQVLPTEDRSNLDRCGFRGSSYLGIPFNPSKNPGTAHPYDSGHIAMTYTGLSCLIILGDDLSRVDK 144 (377)
T ss_dssp GGSCHHHHHHHHHTTEECCCTTCTTGGGCEECSSSTTCCCCCSSCSCCCCCTTCCCCHHHHHHHHHHHHHTTCCSTTSCH
T ss_pred CccCHHHHHHHHHHhcCCccccccCCCCCccCCCcccCCChhhhccccccccCCCCCHHHHHHHHHHHHHhCcccchhhH
Confidence 35679999999999999 5899976542 34789999999999999995 456789
Q ss_pred HHHHHHHHhccCCCCcccCC-CCCCCchhhhHHHHHHHHHhcCCCcccHHHHHHHHHhccCCCCCcccCCCCCcccchHH
Q 021286 55 EDVISWILKCQDESGGFAGN-IGHDPHVLYTLSAVQVLALFDKVDILDADKVSNYIVGLQNEDGSFSGDIWGEVDTRFSY 133 (314)
Q Consensus 55 ~~~~~~l~~~q~~dGGf~~~-~~~~~~~~~T~~al~~L~~l~~~~~~~~~~~~~~l~~~Q~~dGgf~~~~~~~~d~~~ty 133 (314)
+++++||.++|++||+|.+. ...+.++..||+|+.++.+++..+.++++++++||.++|+.||||+..|+.+++...||
T Consensus 145 ~~~~~fL~~~Q~~DGSf~g~~~wGe~DirftY~Al~~l~llg~~~~~~v~ka~~fL~scQn~DGGfGe~p~~ESh~g~T~ 224 (377)
T 1n4q_B 145 EACLAGLRALQLEDGSFCAVPEGSENDMRFVYCASCICYMLNNWSGMDMKKAISYIRRSMSYDNGLAQGAGLESHGGSTF 224 (377)
T ss_dssp HHHHHHHHHHBCTTSCBCSSTTCCCCBHHHHHHHHHHHHHTTCGGGSCHHHHHHHHHHTBCTTSSBBSSTTSCBCHHHHH
T ss_pred HHHHHHHHHhcCCCCCeeeccCCCcchhHHHHHHHHHHHHhcCCChHHHHHHHHHHHHhcCCCCCCCCCCCCCCchhHHH
Confidence 99999999999999999986 45688999999999999999987778899999999999999999999999999999999
Q ss_pred HHHHHHHHhCCCCcc----CHHHHHHHHHhccCCCCCCCCCCCCccchhhhHHHHHHHHHhhcCCcCCHHHHHHHHHccC
Q 021286 134 IAICCLSILQRLDKI----NVDKAVEYIVSCKNLDGGFGCTPGGESHSGQIFCCVGALAIAGALHHVDKDLLGWWLCERQ 209 (314)
Q Consensus 134 ~al~~l~ll~~~~~~----~~~~~~~~l~~~q~~dGGf~~~p~~~s~~~~T~~al~~L~ll~~~~~~~~~~~~~~L~~~Q 209 (314)
||+++|.+++..+.. +++++++||.++| +|||..+|+..+|++|+||+.++|.+++..+.+|.+++.+||+++|
T Consensus 225 cAlaaL~llg~~~~~~~~~~~~rli~wL~~rQ--~gGf~GR~nK~~D~CYSfWv~~~l~iL~~~~~~d~~~l~~fil~cQ 302 (377)
T 1n4q_B 225 CGIASLCLMGKLEEVFSEKELNRIKRWCIMRQ--QNGYHGRPNKPVDTCYSFWVGATLKLLKIFQYTNFEKNRNYILSTQ 302 (377)
T ss_dssp HHHHHHHHHTCHHHHSCHHHHHHHHHHHHTTB--SSSBCSSTTSCCCTTHHHHHHHHHHHTTCGGGSCHHHHHHHHHTTB
T ss_pred HHHHHHHHhcCcccccchhhHHHHHHHHHhcC--CCCcCCCCCcchhHHHHHHHHHHHHHhCCccccCHHHHHHHHHHHc
Confidence 999999999975433 6899999999999 8999999999999999999999999999887789999999999999
Q ss_pred cC-CCcccCCCCCCCCchhHHHHHHHHHhhccCc--ccC-----hHHHHHHHHhh
Q 021286 210 VK-SGGLNGRPEKLPDVCYSWWVLSSLIMIDRVH--WIN-----KDKLVKFILDC 256 (314)
Q Consensus 210 ~~-~GGf~~~~~~~~d~~yt~~~~~~L~~l~~~~--~~~-----~~~~~~~l~~~ 256 (314)
++ +|||+.+|++.+|.++||+++++|++++... .+| ..++++++.+.
T Consensus 303 ~~~~GGf~~~p~~~~D~~HT~~~LagLsl~~~~~l~~i~p~~~i~~~~~~~~~~~ 357 (377)
T 1n4q_B 303 DRLVGGFAKWPDSHPDALHAYFGICGLSLMEESGICKVHPALNVSTRTSERLRDL 357 (377)
T ss_dssp CTTTCSBCSSTTSCCBHHHHHHHHHHHHHTTCTTCCCEETTTTEEHHHHHHHHHH
T ss_pred CCCCCCcCCCCCCCCCHHHHHHHHHHHHhcCCCCCCCCCCcccCCHHHHHHHHHH
Confidence 98 9999999999999999999999999998643 122 24566666653
No 9
>3q7a_B Farnesyltransferase beta subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_B* 3q78_B* 3q79_B* 3q75_B* 3q7f_B* 3sfx_B* 3sfy_B*
Probab=100.00 E-value=6.3e-40 Score=309.54 Aligned_cols=307 Identities=17% Similarity=0.199 Sum_probs=246.6
Q ss_pred cccHHHHHHHHHHcccCCCCccccc--cccchhHHHHHHHHHHHhcCCCC------ccC--HHHHHHHHHhccCCCCccc
Q 021286 3 ELAADKHVKYIISVEKKKDSFESVV--MEHLRLNGAYWGLTTLDILGKLD------AVD--EEDVISWILKCQDESGGFA 72 (314)
Q Consensus 3 ~l~~~~~~~yl~~~~~~~g~~~~~~--~~~~~~~~~~~al~~L~lLg~~~------~~~--~~~~~~~l~~~q~~dGGf~ 72 (314)
+.+++++++||.++|+++|||..+. .+..++..||+||.+|.+++... .++ ++++++||.++|++||+|.
T Consensus 108 ~~~~~~~I~~Ils~Q~~dGGFgg~p~~~~~~hla~TysAV~aL~ilg~~~p~~~~~~Id~~r~k~v~fL~slQ~~DGSF~ 187 (520)
T 3q7a_B 108 QGTKDRVVSTLLHFLSPKGGFGGGPANSQIPHLLPTYASVCSLAIAGNDSSTGGWKDLAAARQSIYEFFMRCKRPDGGFV 187 (520)
T ss_dssp HHHHHHHHHHHHTTBCTTSSBCSSCTTTSCCCHHHHHHHHHHHHHHCBSSTTSBHHHHHHTHHHHHHHHHHHBCTTSCBB
T ss_pred hHHHHHHHHHHHHHcCCCCCCCCCCCCCCCCcHHHHHHHHHHHHHhCccccchhhhhhhhHHHHHHHHHHHHhCCCCCEe
Confidence 4578899999999999999998776 67889999999999999999642 245 8899999999999999999
Q ss_pred CCCCCCCchhhhHHHHHHHHHhcCCCcccHHHHHHHHHhccCCCCCccc-----------------------CCCCCccc
Q 021286 73 GNIGHDPHVLYTLSAVQVLALFDKVDILDADKVSNYIVGLQNEDGSFSG-----------------------DIWGEVDT 129 (314)
Q Consensus 73 ~~~~~~~~~~~T~~al~~L~~l~~~~~~~~~~~~~~l~~~Q~~dGgf~~-----------------------~~~~~~d~ 129 (314)
+....+.++..||+|+.+|.+++..+..+++++++||.++|+.||||+. .|+.|+|.
T Consensus 188 g~~wGe~Dir~TY~Al~~L~lLg~~~~~~v~kav~fI~scQn~DGGfGe~s~~~~~~~~~~~~~~~~rp~~~~Pg~EaHg 267 (520)
T 3q7a_B 188 VCEGGEVDVRGTYCLLVVATLLDIITPELLHNVDKFVSACQTYEGGFACASFPFPSVVPSTSAFPTSEPSCRVSMAEAHG 267 (520)
T ss_dssp SSTTCCBCHHHHHHHHHHHHHHTCCCHHHHTTHHHHHHTTBCTTSSBCSCEEEEC------------CCSEEEECSCCCH
T ss_pred cCCCCCchHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHhcCCCCCccCccccccccccccccccccccccCCCCCccch
Confidence 8767789999999999999999987777889999999999999999998 56889999
Q ss_pred chHHHHHHHHHHhCCC------CccCHHHHHHHHHhccC---CCCCCCCCCCCccchhhhHHHHHHHHHhhcC-------
Q 021286 130 RFSYIAICCLSILQRL------DKINVDKAVEYIVSCKN---LDGGFGCTPGGESHSGQIFCCVGALAIAGAL------- 193 (314)
Q Consensus 130 ~~ty~al~~l~ll~~~------~~~~~~~~~~~l~~~q~---~dGGf~~~p~~~s~~~~T~~al~~L~ll~~~------- 193 (314)
.+||||+++|++|+.. ..++.+++++||..+|. ++|||..+|+...|++|+||+.++|.+++..
T Consensus 268 GyTfCalAaL~lL~~l~~~~~~~~~d~~~l~~WL~~RQ~~~~e~GGF~GR~NKlvD~CYSfWvggsl~iL~~~~~~~~~~ 347 (520)
T 3q7a_B 268 GYTSCSLNSHFLLTSVPLPSFPLSIDANAALRWTVLQQGEPIEGGGFRGRTNKLVDGCYSWWVGGGAPVAEELVRREKSR 347 (520)
T ss_dssp HHHHHHHHHHHHHHTSCCTTCSCCCCHHHHHHHHHHTBCCGGGTTCBBSSTTSCBCTTHHHHTGGGHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhccccccccccccCHHHHHHHHHHhCCcccCCCcccCCCCCCCchhhhhHHHHHHHHHHHHhhccccc
Confidence 9999999999999985 35789999999999996 4699999999999999999999999998753
Q ss_pred -------------------------CcCCHHHHHHHHH-ccCcCC---CcccCCCCCCCCchhHHHHHHHHHhhccCccc
Q 021286 194 -------------------------HHVDKDLLGWWLC-ERQVKS---GGLNGRPEKLPDVCYSWWVLSSLIMIDRVHWI 244 (314)
Q Consensus 194 -------------------------~~~~~~~~~~~L~-~~Q~~~---GGf~~~~~~~~d~~yt~~~~~~L~~l~~~~~~ 244 (314)
..+|.+++.+||+ ++|.+. |||+.+|++.+|.++||+++++|++++.....
T Consensus 348 ~~~~~~~~~~~~~~~~~w~~~~~~~~l~d~~~L~~yIL~~~Q~~~~~~GGf~DkPg~~pD~yHT~y~LaGLSl~qh~~~~ 427 (520)
T 3q7a_B 348 KVKKSRIEVFEEEKEGDWEDVPPIPPIFNRVALQEFTLVAAQQDPGSTGGLRDKPGKRPDQYHTCNNLSGLSIAQHKMSH 427 (520)
T ss_dssp HC---------------------CCCSSCHHHHHHHHHHTTBCCTTSSCCBCSSTTSCCCHHHHHHHHHHHHHHHSCEEE
T ss_pred ccccccccccccccccccccccccccccCHHHHHHHHHHHccCCCCCCCCCCCCCCCCcchhHHHHHHHHHHHhCCCCCC
Confidence 2368899999998 689887 99999999999999999999999999976444
Q ss_pred ChHHHHHHHHhhcCCCCCCcCC---CCCCCCC--------HHHHHHHhhhhh-------ccCCC--CCCCCCCcccCCHH
Q 021286 245 NKDKLVKFILDCQDMENGGISD---RPDDAVD--------VFHTYFGVAGLS-------LLEYP--GLKPIDPAYALPVD 304 (314)
Q Consensus 245 ~~~~~~~~l~~~Q~~~~GGf~~---~p~~~~d--------~~~T~~al~~L~-------l~~~~--~l~~~~~~~~~~~~ 304 (314)
+.++ ++.+....+...|.--- .++..-. .-+.|-...+.. ++|.+ .+.++||+|+|+..
T Consensus 428 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~g~~~n~~~~~hp~~ni~~~ 506 (520)
T 3q7a_B 428 SPST-VSSNRLKFDASKGLPAVKPVAPGGGWKNEDERQNARREIWANALGWIEEEGGEIIVGGKDNRINTTTPVFNILGL 506 (520)
T ss_dssp CHHH-HHHHHHHCCTTCCCCCCCCSSTTCSCSSHHHHHHHHHHHHHHHTCEEECTTCCCCTTCGGGCCCCBCTTTCSBHH
T ss_pred Chhh-HHHhhhccccccccccccccccccccccchhhHHHHHHHHhhhhccccccCCceeecCccccccCCCCcccCCHH
Confidence 4333 44555444422222111 1111000 011122222211 11222 46799999999999
Q ss_pred HHHhcc
Q 021286 305 VVNRIF 310 (314)
Q Consensus 305 ~~~~~~ 310 (314)
.|+++.
T Consensus 507 ~~~~~~ 512 (520)
T 3q7a_B 507 RLKPFI 512 (520)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 998763
No 10
>3dra_B Geranylgeranyltransferase type I beta subunit; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=100.00 E-value=1.8e-39 Score=299.71 Aligned_cols=236 Identities=23% Similarity=0.325 Sum_probs=211.7
Q ss_pred ccHHHHHHHHHHcccCC----CCccccc-----c---ccchhHHHHHHHHHHHhcCCC--CccCHHHHHHHHHhccC---
Q 021286 4 LAADKHVKYIISVEKKK----DSFESVV-----M---EHLRLNGAYWGLTTLDILGKL--DAVDEEDVISWILKCQD--- 66 (314)
Q Consensus 4 l~~~~~~~yl~~~~~~~----g~~~~~~-----~---~~~~~~~~~~al~~L~lLg~~--~~~~~~~~~~~l~~~q~--- 66 (314)
.++++.++||.++|.++ |||.... . +.+++..||+||.+|.+||.. ..++++++.+||.+||+
T Consensus 53 ~~~~~~i~~i~~~q~~~~~~~gGF~g~~~~~~~g~~~~~~hl~~Ty~Al~~L~ilg~~~~~~vdr~~i~~~l~~lQ~~~~ 132 (390)
T 3dra_B 53 QELIYYRNFIINQFMIENNQIISFRSTHYFQKTNQKYDCPNLSSTLFALYNLLILKSPYHTIINRKKIMNFLCKCQVKDG 132 (390)
T ss_dssp HHHHHHHHHHHHHHEEECSSCEEECSSGGGGGSCTTTSCCBHHHHHHHHHHHHHTTCCGGGTCCHHHHHHHHHHHBCCSS
T ss_pred HHHHHHHHHHHHHhccccCCCCCcCCCccCCCCCCccCcccHHHHHHHHHHHHHhCchhhccccHHHHHHHHHHHhCCCC
Confidence 46789999999998753 7887653 2 567999999999999999975 56789999999999998
Q ss_pred C-CCcccCCC-----------CCCCchhhhHHHHHHHHHhcCCC-------------cccHHHHHHHHHhccCCCCCccc
Q 021286 67 E-SGGFAGNI-----------GHDPHVLYTLSAVQVLALFDKVD-------------ILDADKVSNYIVGLQNEDGSFSG 121 (314)
Q Consensus 67 ~-dGGf~~~~-----------~~~~~~~~T~~al~~L~~l~~~~-------------~~~~~~~~~~l~~~Q~~dGgf~~ 121 (314)
+ ||+|...+ +.+.++..||+|+.++.+|+... .+|++++++||.+||+.||||+.
T Consensus 133 ~~dGsF~~~~~~~~~dg~~~~~ge~D~R~~YcA~~i~~lL~~~~~~~~~~~~~~~~~~id~~~~~~~I~~cq~ydGGfg~ 212 (390)
T 3dra_B 133 INKGGFVPTLYYNEENGDYKQYGEPDLRVCYMALLIRHLMKYDDNNNNNNREDSNETDIDLISLQQFILDRININGGFSS 212 (390)
T ss_dssp TTTTCBCSEEEEETTTTEEEEESCCCHHHHHHHHHHHHHTTCC-------------CCCCHHHHHHHHHTTBCTTSCBCS
T ss_pred CCCCceeeeccccccccccccCCcchHHHHHHHHHHHHHhCCCcccccccccccccccccHHHHHHHHHHhcCCCCCcCC
Confidence 7 89999654 56899999999999999998655 57899999999999999999999
Q ss_pred CCCCCcccchHHHHHHHHHHhCCCCccCHHHHHHHHHhccC----------------------------CCCCCCCCCCC
Q 021286 122 DIWGEVDTRFSYIAICCLSILQRLDKINVDKAVEYIVSCKN----------------------------LDGGFGCTPGG 173 (314)
Q Consensus 122 ~~~~~~d~~~ty~al~~l~ll~~~~~~~~~~~~~~l~~~q~----------------------------~dGGf~~~p~~ 173 (314)
.|+.|++..+||||+++|++|+.. ..+++++++||.++|. ++|||..+|+.
T Consensus 213 ~p~~EsH~G~TfCalaaL~lL~~~-~~d~~~l~~WL~~RQ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GGFnGR~nK 291 (390)
T 3dra_B 213 TIMDESHLGFTFCAIASLKLLNYP-LEKLKSTKEWLIHRQVDYPENLYPKDGNGDGNGNGDNYEYYRNIDIGGFNGRENK 291 (390)
T ss_dssp STTSCCCHHHHHHHHHHHHHTTCC-GGGCHHHHHHHHTTBCCCCTTTCC------------CCTTCCGGGTTSBBSSTTC
T ss_pred CCCcccccchhHHHHHHHHHhCcc-cccHHHHHHHHHHcCccccccccccccccccccccccccccccccCCCccCCCCC
Confidence 999999999999999999999986 4688999999999997 57999999999
Q ss_pred ccchhhhHHHHHHHHHhhc--CCcCCHHHHHHHHHcc-CcC-CCcccCCCCCCCCchhHHHHHHHHHhhcc
Q 021286 174 ESHSGQIFCCVGALAIAGA--LHHVDKDLLGWWLCER-QVK-SGGLNGRPEKLPDVCYSWWVLSSLIMIDR 240 (314)
Q Consensus 174 ~s~~~~T~~al~~L~ll~~--~~~~~~~~~~~~L~~~-Q~~-~GGf~~~~~~~~d~~yt~~~~~~L~~l~~ 240 (314)
.+|++|+||+.++|.+++. .+.+|.+++.+||+++ |++ .|||+.+|++.+|.++||+++++|++++.
T Consensus 292 l~D~CYS~Wv~~sL~iL~~~~~~l~d~~~l~~yiL~c~Q~~~~GGf~d~Pg~~pD~yHT~~gLagLsl~~~ 362 (390)
T 3dra_B 292 LSDTCYSWWCTGSLYNIDVNFIKLVDLNKAEDYLLNKTQNQLFGGFGRDPDSTPDPMHSYLALASLSLWNH 362 (390)
T ss_dssp CBCTHHHHHHHHHHHHHCGGGGGGSCHHHHHHHHHHTTBCTTTCSBCSSTTSCCCHHHHHHHHHHHHHHHH
T ss_pred ccchhHHHHHHHHHHHhccccccccCHHHHHHHHHHhccCCCCCCcCCCCCCCCchHHHHHHHHHHHHcCC
Confidence 9999999999999999994 4678999999999997 565 89999999999999999999999999975
No 11
>2sqc_A Squalene-hopene cyclase; isomerase, triterpene cyclase, monotopic membrane protein, QW-sequence, repeat; HET: C8E; 2.00A {Alicyclobacillus acidocaldarius} SCOP: a.102.4.2 a.102.4.2 PDB: 3sqc_A 1ump_A* 1h35_A* 1h36_A* 1h37_A* 1h39_A* 1h3a_A* 1h3b_A* 1h3c_A* 1o6h_A* 1o6q_A* 1gsz_A* 1o79_A* 1sqc_A* 1o6r_A*
Probab=99.94 E-value=1.4e-25 Score=222.00 Aligned_cols=279 Identities=18% Similarity=0.122 Sum_probs=203.8
Q ss_pred HHHHHHHHHHcc--cCCCCccccccccchhHHHHHHHHHHHhcCCC-CccCHHHHHHHHHhccCCC-------------C
Q 021286 6 ADKHVKYIISVE--KKKDSFESVVMEHLRLNGAYWGLTTLDILGKL-DAVDEEDVISWILKCQDES-------------G 69 (314)
Q Consensus 6 ~~~~~~yl~~~~--~~~g~~~~~~~~~~~~~~~~~al~~L~lLg~~-~~~~~~~~~~~l~~~q~~d-------------G 69 (314)
.++|++.|.+.. .+||++..... .+.+|.|.|++.+|..+|.. ..+..+++++||.++|..+ |
T Consensus 283 ~~~~~~~~~~~~~~~~dGg~~~~~~-~s~vwdta~~l~AL~~~G~~~~~~~~~ka~~~L~~~q~~~~g~~~~~~~~~s~G 361 (631)
T 2sqc_A 283 FIKGWEGLELYGVELDYGGWMFQAS-ISPVWDTGLAVLALRAAGLPADHDRLVKAGEWLLDRQITVPGDWAVKRPNLKPG 361 (631)
T ss_dssp HHHHHHGGGGGEEECTTSCEEECSS-CCHHHHHHHHHHHHHHTTCCTTCHHHHHHHHHHHHTCCCSCCGGGGTCTTSCCC
T ss_pred HHHHHHHHHhceEEcCCCceeeCCC-CChHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCCCCChhhhcCCCCCC
Confidence 456777766654 46755432222 36799999999999999964 3556889999999998643 4
Q ss_pred cccCC--CCCCCchhhhHHHHHHHHHhcCCC----cccHHHHHHHHHhccCCCCCcccCCCC------------------
Q 021286 70 GFAGN--IGHDPHVLYTLSAVQVLALFDKVD----ILDADKVSNYIVGLQNEDGSFSGDIWG------------------ 125 (314)
Q Consensus 70 Gf~~~--~~~~~~~~~T~~al~~L~~l~~~~----~~~~~~~~~~l~~~Q~~dGgf~~~~~~------------------ 125 (314)
||+.. +...+++..|..++.+|..++... ...++++++||.++|++||||+.....
T Consensus 362 gW~f~~~~~~~p~v~dTA~al~AL~~~~~~~~~~~~~~l~~a~~wLls~Q~~dGgf~~~~~~~~~~~~~~~~F~~~~~~~ 441 (631)
T 2sqc_A 362 GFAFQFDNVYYPDVCDTAVVVWALNTLRLPDERRRRDAMTKGFRWIVGMQSSNGGWGAYDVDNTSDLPNHIPFSDFGEVT 441 (631)
T ss_dssp CBCSSSSCTTCCBHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHTCCTTSCBCSSCSSCCCSGGGGSTTCSSSCSS
T ss_pred CCccccCCCCCCchHHHHHHHHHHHHcCCCccchhHHHHHHHHHHHHhhcCCCCCCCccCCCCccccccccccccCCccc
Confidence 55433 234688999999999999888632 224678999999999999999642110
Q ss_pred -CcccchHHHHHHHHHHhCCC-CccCHHHHHHHHHhccCCCCCCCCCCCCccchhhhHHHHHHHHHhhcC-CcCCHHHHH
Q 021286 126 -EVDTRFSYIAICCLSILQRL-DKINVDKAVEYIVSCKNLDGGFGCTPGGESHSGQIFCCVGALAIAGAL-HHVDKDLLG 202 (314)
Q Consensus 126 -~~d~~~ty~al~~l~ll~~~-~~~~~~~~~~~l~~~q~~dGGf~~~p~~~s~~~~T~~al~~L~ll~~~-~~~~~~~~~ 202 (314)
.+++..|..++.+|..++.. ....++++++||+++|++||||....+ ..+...|..++.+|..++.. +...+++++
T Consensus 442 d~~~vd~Ta~vl~aL~~~g~~~~~~~i~rai~~L~~~Q~~DGsw~g~wg-~~~~y~Ta~~l~aL~~~g~~~~~~~i~rav 520 (631)
T 2sqc_A 442 DPPSEDVTAHVLECFGSFGYDDAWKVIRRAVEYLKREQKPDGSWFGRWG-VNYLYGTGAVVSALKAVGIDTREPYIQKAL 520 (631)
T ss_dssp CCCBHHHHHHHHHHHHTTTCCTTSHHHHHHHHHHHHHCCTTSCCCCSSB-SSHHHHHHHHHHHHHHTTCCTTSHHHHHHH
T ss_pred CCCCchHHHHHHHHHHhcCCCccHHHHHHHHHHHHHhcCCCCCCCCCCC-CCchHHHHHHHHHHHHhCCcccHHHHHHHH
Confidence 13445677777888777652 234678999999999999999954433 23444566677777776643 234588999
Q ss_pred HHHHccCcCCCcccCCC----------CCCCCchhHHHHHHHHHhhccCcccChHHHHHHHHhhcCCCCCCcCCCCCCC-
Q 021286 203 WWLCERQVKSGGLNGRP----------EKLPDVCYSWWVLSSLIMIDRVHWINKDKLVKFILDCQDMENGGISDRPDDA- 271 (314)
Q Consensus 203 ~~L~~~Q~~~GGf~~~~----------~~~~d~~yt~~~~~~L~~l~~~~~~~~~~~~~~l~~~Q~~~~GGf~~~p~~~- 271 (314)
+||+++|++||||+..+ ...++++.|+|++.+|..++.......+++++||.++|+ ++|||...+...
T Consensus 521 ~~L~s~Q~~DGgWg~~~~sy~~~~~~~~~~s~v~~Ta~ALlaL~~ag~~~~~~i~rav~wL~~~Q~-~dGgw~~~~~tg~ 599 (631)
T 2sqc_A 521 DWVEQHQNPDGGWGEDCRSYEDPAYAGKGASTPSQTAWALMALIAGGRAESEAARRGVQYLVETQR-PDGGWDEPYYTGT 599 (631)
T ss_dssp HHHHHTCCTTSCCCCCGGGGTCGGGTTCSSCCHHHHHHHHHHHHHTTCSSSHHHHHHHHHHHHHCC-TTSCCCCCSCCEE
T ss_pred HHHHHhCcCCCCcCCccccccccccCCCCCCCHHHHHHHHHHHHHcCCCChHHHHHHHHHHHhccC-CCCCcCCCCcccc
Confidence 99999999999996532 235788999999999999987643446889999999999 799999865432
Q ss_pred --C-------CHHHHHHHhhhhhcc
Q 021286 272 --V-------DVFHTYFGVAGLSLL 287 (314)
Q Consensus 272 --~-------d~~~T~~al~~L~l~ 287 (314)
| ..|.++++|.+|+..
T Consensus 600 gf~~~~yl~y~~y~~~f~l~AL~~y 624 (631)
T 2sqc_A 600 GFPGDFYLGYTMYRHVFPTLALGRY 624 (631)
T ss_dssp EETTTEEEEETTHHHHHHHHHHHHH
T ss_pred cccccceeeccchhhHHHHHHHHHH
Confidence 1 246778888887654
No 12
>1w6k_A Lanosterol synthase; cyclase, cholesterol, monotopic membrane protein, B-octyl-glucoside, isomerase, steroid biosynthesis; HET: BOG LAN; 2.1A {Homo sapiens} SCOP: a.102.4.2 a.102.4.2 PDB: 1w6j_A*
Probab=99.93 E-value=4.2e-25 Score=221.04 Aligned_cols=279 Identities=14% Similarity=0.151 Sum_probs=200.7
Q ss_pred HHHHHHHHHHc--ccCCCCccccccccchhHHHHHHHHHHHhcCCCC----ccCHHHHHHHHHhccCCC-----------
Q 021286 6 ADKHVKYIISV--EKKKDSFESVVMEHLRLNGAYWGLTTLDILGKLD----AVDEEDVISWILKCQDES----------- 68 (314)
Q Consensus 6 ~~~~~~yl~~~--~~~~g~~~~~~~~~~~~~~~~~al~~L~lLg~~~----~~~~~~~~~~l~~~q~~d----------- 68 (314)
..+|++.|.+. ..+||.+. .....+.++.|.+++.+|...|... ....+++++||+++|+.+
T Consensus 358 ~~~~l~~l~~~l~~~~dG~~~-q~~~gs~vwdTalal~AL~~ag~~~~~~~~~~l~ka~~~L~~~Q~~~~~~d~~~~~r~ 436 (732)
T 1w6k_A 358 FQEHVSRIPDYLWMGLDGMKM-QGTNGSQIWDTAFAIQALLEAGGHHRPEFSSCLQKAHEFLRLSQVPDNPPDYQKYYRQ 436 (732)
T ss_dssp HHHHHHTSGGGEEEETTEEEE-CSSSCCHHHHHHHHHHHHHHTTGGGCGGGHHHHHHHHHHHHHHSCCCCCTTGGGGTCC
T ss_pred HHHHHHHHHHhheeCCCCcee-CCCCCCchHHHHHHHHHHHHcCCCcchhhHHHHHHHHHHHHHhcccccCCcccccccC
Confidence 45677777664 34676442 1111257889999999999887432 234689999999999766
Q ss_pred ---CcccCCCC--CCCchhhhHHHHHHHHHhcCC--------CcccHHHHHHHHHhccCCCCCcccCC------------
Q 021286 69 ---GGFAGNIG--HDPHVLYTLSAVQVLALFDKV--------DILDADKVSNYIVGLQNEDGSFSGDI------------ 123 (314)
Q Consensus 69 ---GGf~~~~~--~~~~~~~T~~al~~L~~l~~~--------~~~~~~~~~~~l~~~Q~~dGgf~~~~------------ 123 (314)
|||+.... ..|++..|..++.+|..+... ....++++++||.++|++||||....
T Consensus 437 ~~~GGW~f~~~~~~~pd~d~TA~vl~aL~~~~~~~~~~g~~~~~~~i~~av~wLls~Q~~DGgw~a~~~~~~~~~l~~i~ 516 (732)
T 1w6k_A 437 MRKGGFSFSTLDCGWIVSDCTAEALKAVLLLQEKCPHVTEHIPRERLCDAVAVLLNMRNPDGGFATYETKRGGHLLELLN 516 (732)
T ss_dssp CCTTCCBSSCTTTCCBCHHHHHHHHHHHHHHHHHCTTCCSCCCHHHHHHHHHHHHTTCCTTSCBCSSSCCCSCGGGGGGC
T ss_pred CCCCeecCCCCCCCCCccccHHHHHHHHHHHhcccccccchhhHHHHHHHHHHHHHhcCCCCCEEeecCCCchHHHhhCc
Confidence 88887643 468899999999999987421 22246889999999999999995311
Q ss_pred ----CCC-----cccchHHHHHHHHHHhCCC---C-----ccCHHHHHHHHHhccCCCCCCCCCCCCccchhhhHHHHHH
Q 021286 124 ----WGE-----VDTRFSYIAICCLSILQRL---D-----KINVDKAVEYIVSCKNLDGGFGCTPGGESHSGQIFCCVGA 186 (314)
Q Consensus 124 ----~~~-----~d~~~ty~al~~l~ll~~~---~-----~~~~~~~~~~l~~~q~~dGGf~~~p~~~s~~~~T~~al~~ 186 (314)
.+. +.+..|..++.+|..++.. . ...++++++||+++|++||||....+. .+...|++++.+
T Consensus 517 ~~e~fg~~~~d~s~v~~Ta~vL~aL~~~~~~~~~~~~~~~~~~i~rAv~yL~~~Q~~DGsW~g~wg~-~~~Y~T~~al~A 595 (732)
T 1w6k_A 517 PSEVFGDIMIDYTYVECTSAVMQALKYFHKRFPEHRAAEIRETLTQGLEFCRRQQRADGSWEGSWGV-CFTYGTWFGLEA 595 (732)
T ss_dssp CCSSCSSCSSCCCBHHHHHHHHHHHHHHHHHCTTSSHHHHHHHHHHHHHHHHHHSCTTSCCCCSSBS-SHHHHHHHHHHH
T ss_pred chhcccccccCCCcchHHHHHHHHHHHhccccccccchhhHHHHHHHHHHHHhhcCCCCCccCcCCC-ccchHHHHHHHH
Confidence 111 1223455677777766531 0 235789999999999999999876442 345568889999
Q ss_pred HHHhhcCCc-----CCHHHHHHHHHccCcCCCcccCCC----------CCCCCchhHHHHHHHHHhhccCcccChHHHHH
Q 021286 187 LAIAGALHH-----VDKDLLGWWLCERQVKSGGLNGRP----------EKLPDVCYSWWVLSSLIMIDRVHWINKDKLVK 251 (314)
Q Consensus 187 L~ll~~~~~-----~~~~~~~~~L~~~Q~~~GGf~~~~----------~~~~d~~yt~~~~~~L~~l~~~~~~~~~~~~~ 251 (314)
|..+|.... ..++++++||+++|++||||+..+ ++.++++.|.|++.+|..++.....+.+++++
T Consensus 596 L~~aG~~~~~~~~~~~i~rav~~Lls~Q~~DGGWge~~~s~~~~~y~~~~~s~v~~TAwALlALl~ag~~~~~~i~r~v~ 675 (732)
T 1w6k_A 596 FACMGQTYRDGTACAEVSRACDFLLSRQMADGGWGEDFESCEERRYVQSAQSQIHNTCWAMMGLMAVRHPDIEAQERGVR 675 (732)
T ss_dssp HHHTTCCCBTTBCCHHHHHHHHHHHTTCCTTSCCCBCTHHHHHTSCCBCSSCCHHHHHHHHHHHHHTTCSCHHHHHHHHH
T ss_pred HHHhCCcccccchhHHHHHHHHHHHHhcccCCCCCCCCccccccccCCCCCCCHHHHHHHHHHHHHcCCCChHHHHHHHH
Confidence 999887432 357899999999999999998642 45678999999999998888654445778999
Q ss_pred HHHhhcCCCCCCcCCCCCCC--C-------CHHHHHHHhhhhhcc
Q 021286 252 FILDCQDMENGGISDRPDDA--V-------DVFHTYFGVAGLSLL 287 (314)
Q Consensus 252 ~l~~~Q~~~~GGf~~~p~~~--~-------d~~~T~~al~~L~l~ 287 (314)
||.++|+ ++|||...+... + ..|..++.|-+|+..
T Consensus 676 wL~~~Q~-~~Ggf~~~~~~g~f~~~~~i~Y~~y~~~fpl~AL~~y 719 (732)
T 1w6k_A 676 CLLEKQL-PNGDWPQENIAGVFNKSCAISYTSYRNIFPIWALGRF 719 (732)
T ss_dssp HHHHHCC-TTSCCCCCSCCEEETTTEEECCTTHHHHHHHHHHHHH
T ss_pred HHHHhcC-CCCCccCCcccccccchhhhcccchhHHHHHHHHHHH
Confidence 9999999 799999754311 1 124455566666554
No 13
>2sqc_A Squalene-hopene cyclase; isomerase, triterpene cyclase, monotopic membrane protein, QW-sequence, repeat; HET: C8E; 2.00A {Alicyclobacillus acidocaldarius} SCOP: a.102.4.2 a.102.4.2 PDB: 3sqc_A 1ump_A* 1h35_A* 1h36_A* 1h37_A* 1h39_A* 1h3a_A* 1h3b_A* 1h3c_A* 1o6h_A* 1o6q_A* 1gsz_A* 1o79_A* 1sqc_A* 1o6r_A*
Probab=99.92 E-value=9.4e-24 Score=208.88 Aligned_cols=277 Identities=16% Similarity=0.077 Sum_probs=201.4
Q ss_pred cHHHHHHHHHHcccCCCCccccccccchhHHHHHHHHHHHhcCCCCccCHHHHHHHHHhcc--CCCCcccCCCCCCCchh
Q 021286 5 AADKHVKYIISVEKKKDSFESVVMEHLRLNGAYWGLTTLDILGKLDAVDEEDVISWILKCQ--DESGGFAGNIGHDPHVL 82 (314)
Q Consensus 5 ~~~~~~~yl~~~~~~~g~~~~~~~~~~~~~~~~~al~~L~lLg~~~~~~~~~~~~~l~~~q--~~dGGf~~~~~~~~~~~ 82 (314)
..+++++||...+.++|+|+... + .+++++.+|..+|..+++..+++++.|.+.. .+|||+...+. .+.++
T Consensus 240 a~~~~~~~i~~~~~~~g~~~~i~-----p-~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~dGg~~~~~~-~s~vw 312 (631)
T 2sqc_A 240 AEIRALDWLLERQAGDGSWGGIQ-----P-PWFYALIALKILDMTQHPAFIKGWEGLELYGVELDYGGWMFQAS-ISPVW 312 (631)
T ss_dssp HHHHHHHHHHHHCCTTSSSTTSH-----H-HHHHHHHHHHHTTCTTSHHHHHHHHGGGGGEEECTTSCEEECSS-CCHHH
T ss_pred HHHHHHHHHHHHHcCCCCccccc-----H-HHHHHHHHHHHcCCCCCHHHHHHHHHHHhceEEcCCCceeeCCC-CChHH
Confidence 34788999999999999975321 1 4778999999999555556778888887753 67877654443 47799
Q ss_pred hhHHHHHHHHHhcCC-CcccHHHHHHHHHhccCCC-CCcc------------c--CCCCCcccchHHHHHHHHHHhCCCC
Q 021286 83 YTLSAVQVLALFDKV-DILDADKVSNYIVGLQNED-GSFS------------G--DIWGEVDTRFSYIAICCLSILQRLD 146 (314)
Q Consensus 83 ~T~~al~~L~~l~~~-~~~~~~~~~~~l~~~Q~~d-Ggf~------------~--~~~~~~d~~~ty~al~~l~ll~~~~ 146 (314)
.|.+++.+|..+|.. +...++++++||.+.|..+ |.|. . .+.+.+|+.-|..++.+|..++...
T Consensus 313 dta~~l~AL~~~G~~~~~~~~~ka~~~L~~~q~~~~g~~~~~~~~~s~GgW~f~~~~~~~p~v~dTA~al~AL~~~~~~~ 392 (631)
T 2sqc_A 313 DTGLAVLALRAAGLPADHDRLVKAGEWLLDRQITVPGDWAVKRPNLKPGGFAFQFDNVYYPDVCDTAVVVWALNTLRLPD 392 (631)
T ss_dssp HHHHHHHHHHHTTCCTTCHHHHHHHHHHHHTCCCSCCGGGGTCTTSCCCCBCSSSSCTTCCBHHHHHHHHHHHTTCCCSC
T ss_pred HHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCCCCChhhhcCCCCCCCCccccCCCCCCchHHHHHHHHHHHHcCCCc
Confidence 999999999999853 3445889999999998743 4332 1 1122356677878888888777632
Q ss_pred ----ccCHHHHHHHHHhccCCCCCCCCCCC-------------------CccchhhhHHHHHHHHHhhcCC-cCCHHHHH
Q 021286 147 ----KINVDKAVEYIVSCKNLDGGFGCTPG-------------------GESHSGQIFCCVGALAIAGALH-HVDKDLLG 202 (314)
Q Consensus 147 ----~~~~~~~~~~l~~~q~~dGGf~~~p~-------------------~~s~~~~T~~al~~L~ll~~~~-~~~~~~~~ 202 (314)
...++++++||+++|++||||+..+. ..++...|..++.+|..++... ...+++++
T Consensus 393 ~~~~~~~l~~a~~wLls~Q~~dGgf~~~~~~~~~~~~~~~~F~~~~~~~d~~~vd~Ta~vl~aL~~~g~~~~~~~i~rai 472 (631)
T 2sqc_A 393 ERRRRDAMTKGFRWIVGMQSSNGGWGAYDVDNTSDLPNHIPFSDFGEVTDPPSEDVTAHVLECFGSFGYDDAWKVIRRAV 472 (631)
T ss_dssp HHHHHHHHHHHHHHHHHTCCTTSCBCSSCSSCCCSGGGGSTTCSSSCSSCCCBHHHHHHHHHHHHTTTCCTTSHHHHHHH
T ss_pred cchhHHHHHHHHHHHHhhcCCCCCCCccCCCCccccccccccccCCcccCCCCchHHHHHHHHHHhcCCCccHHHHHHHH
Confidence 23567899999999999999975321 1156667888888888877532 23478999
Q ss_pred HHHHccCcCCCcccCCCCCCCCchhHHHHHHHHHhhccCc-ccChHHHHHHHHhhcCCCCCCcCCCC----------CCC
Q 021286 203 WWLCERQVKSGGLNGRPEKLPDVCYSWWVLSSLIMIDRVH-WINKDKLVKFILDCQDMENGGISDRP----------DDA 271 (314)
Q Consensus 203 ~~L~~~Q~~~GGf~~~~~~~~d~~yt~~~~~~L~~l~~~~-~~~~~~~~~~l~~~Q~~~~GGf~~~p----------~~~ 271 (314)
+||.++|++||||.++.+. ..++.|..++.+|..++... ....+++++||+++|+ ++|||...+ ...
T Consensus 473 ~~L~~~Q~~DGsw~g~wg~-~~~y~Ta~~l~aL~~~g~~~~~~~i~rav~~L~s~Q~-~DGgWg~~~~sy~~~~~~~~~~ 550 (631)
T 2sqc_A 473 EYLKREQKPDGSWFGRWGV-NYLYGTGAVVSALKAVGIDTREPYIQKALDWVEQHQN-PDGGWGEDCRSYEDPAYAGKGA 550 (631)
T ss_dssp HHHHHHCCTTSCCCCSSBS-SHHHHHHHHHHHHHHTTCCTTSHHHHHHHHHHHHTCC-TTSCCCCCGGGGTCGGGTTCSS
T ss_pred HHHHHhcCCCCCCCCCCCC-CchHHHHHHHHHHHHhCCcccHHHHHHHHHHHHHhCc-CCCCcCCccccccccccCCCCC
Confidence 9999999999999776532 12333444555566655421 1336889999999999 799997543 346
Q ss_pred CCHHHHHHHhhhhhccCCC
Q 021286 272 VDVFHTYFGVAGLSLLEYP 290 (314)
Q Consensus 272 ~d~~~T~~al~~L~l~~~~ 290 (314)
+++.+|+++|.+|..++..
T Consensus 551 s~v~~Ta~ALlaL~~ag~~ 569 (631)
T 2sqc_A 551 STPSQTAWALMALIAGGRA 569 (631)
T ss_dssp CCHHHHHHHHHHHHHTTCS
T ss_pred CCHHHHHHHHHHHHHcCCC
Confidence 8999999999999998874
No 14
>1w6k_A Lanosterol synthase; cyclase, cholesterol, monotopic membrane protein, B-octyl-glucoside, isomerase, steroid biosynthesis; HET: BOG LAN; 2.1A {Homo sapiens} SCOP: a.102.4.2 a.102.4.2 PDB: 1w6j_A*
Probab=99.92 E-value=4.8e-24 Score=213.44 Aligned_cols=213 Identities=17% Similarity=0.199 Sum_probs=167.6
Q ss_pred HHHHHHHHHHcccCC--------------CCccccccc--cchhHHHHHHHHHHHhcCC--------CCccCHHHHHHHH
Q 021286 6 ADKHVKYIISVEKKK--------------DSFESVVME--HLRLNGAYWGLTTLDILGK--------LDAVDEEDVISWI 61 (314)
Q Consensus 6 ~~~~~~yl~~~~~~~--------------g~~~~~~~~--~~~~~~~~~al~~L~lLg~--------~~~~~~~~~~~~l 61 (314)
.+++++||.++|..+ |+|.+...+ ..++..|.+++.+|..++. ......+++++||
T Consensus 411 l~ka~~~L~~~Q~~~~~~d~~~~~r~~~~GGW~f~~~~~~~pd~d~TA~vl~aL~~~~~~~~~~g~~~~~~~i~~av~wL 490 (732)
T 1w6k_A 411 LQKAHEFLRLSQVPDNPPDYQKYYRQMRKGGFSFSTLDCGWIVSDCTAEALKAVLLLQEKCPHVTEHIPRERLCDAVAVL 490 (732)
T ss_dssp HHHHHHHHHHHSCCCCCTTGGGGTCCCCTTCCBSSCTTTCCBCHHHHHHHHHHHHHHHHHCTTCCSCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcccccCCcccccccCCCCCeecCCCCCCCCCccccHHHHHHHHHHHhcccccccchhhHHHHHHHHHHH
Confidence 478999999998755 888765432 3577789999999988742 1223468999999
Q ss_pred HhccCCCCcccCCCC---------------------CCCchhhhHHHHHHHHHhcCC------C--cccHHHHHHHHHhc
Q 021286 62 LKCQDESGGFAGNIG---------------------HDPHVLYTLSAVQVLALFDKV------D--ILDADKVSNYIVGL 112 (314)
Q Consensus 62 ~~~q~~dGGf~~~~~---------------------~~~~~~~T~~al~~L~~l~~~------~--~~~~~~~~~~l~~~ 112 (314)
+++|++||||+.+.. ..+++..|.+++.+|..++.. + ...++++++||.++
T Consensus 491 ls~Q~~DGgw~a~~~~~~~~~l~~i~~~e~fg~~~~d~s~v~~Ta~vL~aL~~~~~~~~~~~~~~~~~~i~rAv~yL~~~ 570 (732)
T 1w6k_A 491 LNMRNPDGGFATYETKRGGHLLELLNPSEVFGDIMIDYTYVECTSAVMQALKYFHKRFPEHRAAEIRETLTQGLEFCRRQ 570 (732)
T ss_dssp HTTCCTTSCBCSSSCCCSCGGGGGGCCCSSCSSCSSCCCBHHHHHHHHHHHHHHHHHCTTSSHHHHHHHHHHHHHHHHHH
T ss_pred HHhcCCCCCEEeecCCCchHHHhhCcchhcccccccCCCcchHHHHHHHHHHHhccccccccchhhHHHHHHHHHHHHhh
Confidence 999999999974321 124677899999999887631 1 23478999999999
Q ss_pred cCCCCCcccCCCCCcccchHHHHHHHHHHhCCCCc-----cCHHHHHHHHHhccCCCCCCCCC----------CCCccch
Q 021286 113 QNEDGSFSGDIWGEVDTRFSYIAICCLSILQRLDK-----INVDKAVEYIVSCKNLDGGFGCT----------PGGESHS 177 (314)
Q Consensus 113 Q~~dGgf~~~~~~~~d~~~ty~al~~l~ll~~~~~-----~~~~~~~~~l~~~q~~dGGf~~~----------p~~~s~~ 177 (314)
|++||||.+.. +..+++.|++++.+|..+|.... ..++++++||+++|++||||+.. ++.+++.
T Consensus 571 Q~~DGsW~g~w-g~~~~Y~T~~al~AL~~aG~~~~~~~~~~~i~rav~~Lls~Q~~DGGWge~~~s~~~~~y~~~~~s~v 649 (732)
T 1w6k_A 571 QRADGSWEGSW-GVCFTYGTWFGLEAFACMGQTYRDGTACAEVSRACDFLLSRQMADGGWGEDFESCEERRYVQSAQSQI 649 (732)
T ss_dssp SCTTSCCCCSS-BSSHHHHHHHHHHHHHHTTCCCBTTBCCHHHHHHHHHHHTTCCTTSCCCBCTHHHHHTSCCBCSSCCH
T ss_pred cCCCCCccCcC-CCccchHHHHHHHHHHHhCCcccccchhHHHHHHHHHHHHhcccCCCCCCCCccccccccCCCCCCCH
Confidence 99999997643 34566778889999999987432 46889999999999999999964 3556899
Q ss_pred hhhHHHHHHHHHhhcCCcCCHHHHHHHHHccCcCCCcccCCC
Q 021286 178 GQIFCCVGALAIAGALHHVDKDLLGWWLCERQVKSGGLNGRP 219 (314)
Q Consensus 178 ~~T~~al~~L~ll~~~~~~~~~~~~~~L~~~Q~~~GGf~~~~ 219 (314)
..|.+|+.+|..++..+..+++++++||.++|+++|||...+
T Consensus 650 ~~TAwALlALl~ag~~~~~~i~r~v~wL~~~Q~~~Ggf~~~~ 691 (732)
T 1w6k_A 650 HNTCWAMMGLMAVRHPDIEAQERGVRCLLEKQLPNGDWPQEN 691 (732)
T ss_dssp HHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHCCTTSCCCCCS
T ss_pred HHHHHHHHHHHHcCCCChHHHHHHHHHHHHhcCCCCCccCCc
Confidence 999999999888876655568899999999999999998654
No 15
>1qqf_A Protein (complement C3DG); alpha-alpha barrel, immune system; 1.45A {Rattus norvegicus} SCOP: a.102.4.4 PDB: 1qsj_A 3d5r_A 2noj_A 2gox_A 3d5s_A 1c3d_A 2xqw_A
Probab=99.73 E-value=2.8e-16 Score=140.32 Aligned_cols=208 Identities=16% Similarity=0.118 Sum_probs=142.6
Q ss_pred HHHHHHHHHhccCCCCcccCCCCCCCchhhhHHHHHHHHHhcCCCccc---HHHHHHHHHh-ccCCCCCcccCCC-C---
Q 021286 54 EEDVISWILKCQDESGGFAGNIGHDPHVLYTLSAVQVLALFDKVDILD---ADKVSNYIVG-LQNEDGSFSGDIW-G--- 125 (314)
Q Consensus 54 ~~~~~~~l~~~q~~dGGf~~~~~~~~~~~~T~~al~~L~~l~~~~~~~---~~~~~~~l~~-~Q~~dGgf~~~~~-~--- 125 (314)
.++.+++++++|++||||+.+++.+++.+.|.+++.+|..+.....++ ++++++||.+ .|++||+|..... -
T Consensus 40 i~~g~~~~l~~q~~dGgf~~f~~~~~s~wlTa~v~~~l~~a~~~~~v~~~~i~~a~~~L~~~~Q~~dG~f~~~~~~~~~~ 119 (277)
T 1qqf_A 40 IKKGYTQQLAFKQPISAYAAFNNRPPSTWLTAYVSRVFSLAANLIAIDSQVLCGAVKWLILEKQKPDGVFQEDGPVIHQE 119 (277)
T ss_dssp HHHHHHHHHTTBCTTSCBCSSTTSCCCHHHHHHHHHHHHHHTTTSCCCHHHHHHHHHHHHHHHBCTTSCBCCSSCCSCGG
T ss_pred HHHHHHHHHHhcCCCCCccccCCCCccHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhccCCCCCccCCccccchh
Confidence 345556699999999999999988999999999999999997543333 5689999995 9999999975421 0
Q ss_pred ---------CcccchHHHHHHHHHHhCC------C-CccCHHHHHHHHHhccCCCCCCCCCCCCccchhhhHHHHHHHHH
Q 021286 126 ---------EVDTRFSYIAICCLSILQR------L-DKINVDKAVEYIVSCKNLDGGFGCTPGGESHSGQIFCCVGALAI 189 (314)
Q Consensus 126 ---------~~d~~~ty~al~~l~ll~~------~-~~~~~~~~~~~l~~~q~~dGGf~~~p~~~s~~~~T~~al~~L~l 189 (314)
+.++..|+.++.+|...+. . ....++++++||.++++.. .+.........+|.+
T Consensus 120 ~~g~~~~~~~~~~~lta~vl~aL~~~~~~~~~~~~~~~~~i~~A~~~L~~~~~~~----------~~~y~~a~~ayAl~l 189 (277)
T 1qqf_A 120 MIGGFRNTKEADVSLTAFVLIALQEARDICEGQVNSLPGSINKAGEYLEASYLNL----------QRPYTVAIAGYALAL 189 (277)
T ss_dssp GGGGGGSCTTHHHHHHHHHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHHHHHTTC----------CCHHHHHHHHHHHHH
T ss_pred hcCCCCCCccCccchHHHHHHHHHhhhhccccCCCchHHHHHHHHHHHHHHhccC----------CCHHHHHHHHHHHHH
Confidence 1223334455555544421 1 1346789999999998641 111122233334555
Q ss_pred hhcCCcCCHHHHHHHHHccCcCCCcccCCCCCC-CCchhHHHHHHHHHhhccCcccChHHHHHHHHhhcCCCCCCcCCCC
Q 021286 190 AGALHHVDKDLLGWWLCERQVKSGGLNGRPEKL-PDVCYSWWVLSSLIMIDRVHWINKDKLVKFILDCQDMENGGISDRP 268 (314)
Q Consensus 190 l~~~~~~~~~~~~~~L~~~Q~~~GGf~~~~~~~-~d~~yt~~~~~~L~~l~~~~~~~~~~~~~~l~~~Q~~~~GGf~~~p 268 (314)
.|.. .+..++.|.++.. +|++-..++.. .++..|.|++.+|...+.. .+.+++++||.+.|+ .+|||..
T Consensus 190 ~g~~----~~~~l~~l~~~~~-~~~~w~~~~~~~~~ve~Ta~aLlal~~~~~~--~~~~~~v~wL~~qq~-~~Ggw~s-- 259 (277)
T 1qqf_A 190 MNKL----EEPYLTKFLNTAK-DRNRWEEPGQQLYNVEATSYALLALLLLKDF--DSVPPVVRWLNDERY-YGGGYGS-- 259 (277)
T ss_dssp TTCC----CTTHHHHHHHHSB-TTTBCCCTTCHHHHHHHHHHHHHHHHHTTCT--TSHHHHHHHHHHCCC-CTTSTTC--
T ss_pred cCCh----HHHHHHHHHHhcc-CCCCCCCCCCccchhHHHHHHHHHHHhcCCh--hhHHHHHHHHHHccC-CCCCeec--
Confidence 5543 3456677766544 45443344321 2567888888888777653 567889999999999 7899985
Q ss_pred CCCCCHHHHHHHhhhhhc
Q 021286 269 DDAVDVFHTYFGVAGLSL 286 (314)
Q Consensus 269 ~~~~d~~~T~~al~~L~l 286 (314)
...|..||-+|+-
T Consensus 260 -----Tq~T~~aL~AL~~ 272 (277)
T 1qqf_A 260 -----TQATFMVFQALAQ 272 (277)
T ss_dssp -----HHHHHHHHHHHHH
T ss_pred -----chHHHHHHHHHHH
Confidence 5889999988864
No 16
>2wy7_A Complement C3D fragment; immune system, immune response, innate immunity, complement inflammatory response; 1.70A {Homo sapiens} PDB: 2wy8_A 3oed_A 3oxu_A 3rj3_A 1ghq_A* 1w2s_A
Probab=99.71 E-value=6.9e-16 Score=140.00 Aligned_cols=210 Identities=19% Similarity=0.135 Sum_probs=143.6
Q ss_pred HHHHHHHHHhccCCCCcccCCCCCCCchhhhHHHHHHHHHhcCCCccc---HHHHHHHHHh-ccCCCCCcccCCCC----
Q 021286 54 EEDVISWILKCQDESGGFAGNIGHDPHVLYTLSAVQVLALFDKVDILD---ADKVSNYIVG-LQNEDGSFSGDIWG---- 125 (314)
Q Consensus 54 ~~~~~~~l~~~q~~dGGf~~~~~~~~~~~~T~~al~~L~~l~~~~~~~---~~~~~~~l~~-~Q~~dGgf~~~~~~---- 125 (314)
.++.+++++++|++||||+.+++.+++.+.|.+++.+|..+.....++ ++++++||.+ .|++||+|.....-
T Consensus 56 i~~g~~~~l~~q~~dGgf~~f~~~~~s~wlTa~v~~~l~~a~~~~~v~~~~i~~a~~~L~~~~Q~~dGsf~~~~~~~~~~ 135 (310)
T 2wy7_A 56 IKKGYTQQLAFRQPSSAFAAFVKRAPSTWLTAYVVKVFSLAVNLIAIDSQVLCGAVKWLILEKQKPDGVFQEDAPVIHQE 135 (310)
T ss_dssp HHHHHHHHHTTBCTTSCBCSSTTSCCCHHHHHHHHHHHHHHTTTSCCCHHHHHHHHHHHHHHHBCTTSCBCCSSCCSCGG
T ss_pred HHHHHHHHHHhcCCCCCcccCCCCCccHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCCCCccccCCCccCHh
Confidence 345666799999999999999988899999999999999997543333 5789999996 99999999754310
Q ss_pred ---------CcccchHHHHHHHHHHhCC------C-CccCHHHHHHHHHhccCCCCCCCCCCCCccchhhhHHHHHHHHH
Q 021286 126 ---------EVDTRFSYIAICCLSILQR------L-DKINVDKAVEYIVSCKNLDGGFGCTPGGESHSGQIFCCVGALAI 189 (314)
Q Consensus 126 ---------~~d~~~ty~al~~l~ll~~------~-~~~~~~~~~~~l~~~q~~dGGf~~~p~~~s~~~~T~~al~~L~l 189 (314)
+.++..|+.++.+|...+. . ....++++++||.++++.- .+.....++..+|.+
T Consensus 136 ~~g~~~~~~~~~~~~ta~vl~aL~~~~~~~~~~~~~~~~~i~~A~~~L~~~~~~~----------~~~y~~a~~ayAL~l 205 (310)
T 2wy7_A 136 MIGGLRNNNEKDMALTAFVLISLQEAKDICEEQVNSLPGSITKAGDFLEANYMNL----------QRSYTVAIAGYALAQ 205 (310)
T ss_dssp GGGGGTTCSCHHHHHHHHHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHHHHGGGC----------CCHHHHHHHHHHHHH
T ss_pred hcCCcccccccccchHHHHHHHHHhcccccccCCcchHHHHHHHHHHHHHHhhcc----------CCHHHHHHHHHHHHh
Confidence 1223334445555544421 1 1345789999999998651 111112233333445
Q ss_pred hhcCCcCCHHHHHHHHHccCcCCCcccCCCCC-CCCchhHHHHHHHHHhhccCcccChHHHHHHHHhhcCCCCCCcCCCC
Q 021286 190 AGALHHVDKDLLGWWLCERQVKSGGLNGRPEK-LPDVCYSWWVLSSLIMIDRVHWINKDKLVKFILDCQDMENGGISDRP 268 (314)
Q Consensus 190 l~~~~~~~~~~~~~~L~~~Q~~~GGf~~~~~~-~~d~~yt~~~~~~L~~l~~~~~~~~~~~~~~l~~~Q~~~~GGf~~~p 268 (314)
.|.. .+.+++.|.++.. +|++-..++. ..++..|.|++.+|...+.. .+.+++++||.+.|+ .+|||..
T Consensus 206 ~g~~----~~~~l~~l~~~~~-~~~~w~~~~~~~~~ve~Ta~aLlal~~~~~~--~~~~~~v~wL~~qq~-~~Ggw~s-- 275 (310)
T 2wy7_A 206 MGRL----KGPLLNKFLTTAK-DKNRWEDPGKQLYNVEATSYALLALLQLKDF--DFVPPVVRWLNEQRY-YGGGYGS-- 275 (310)
T ss_dssp TTCC----CHHHHHHHHHHSB-TTTBCCCSSCHHHHHHHHHHHHHHHHHHTCT--TTHHHHHHHHHHTTC-CCCSTTC--
T ss_pred cCCc----HHHHHHHHHHhcc-CCCCCCCCCCcccchHHHHHHHHHHHhcCCh--hhHHHHHHHHHHccC-CCCCeec--
Confidence 5543 3556677766543 4444333332 12567888999888877654 557889999999999 7899974
Q ss_pred CCCCCHHHHHHHhhhhhccC
Q 021286 269 DDAVDVFHTYFGVAGLSLLE 288 (314)
Q Consensus 269 ~~~~d~~~T~~al~~L~l~~ 288 (314)
...|..+|.+|+...
T Consensus 276 -----Tq~T~~aL~AL~~y~ 290 (310)
T 2wy7_A 276 -----TQATFMVFQALAQYQ 290 (310)
T ss_dssp -----HHHHHHHHHHHHHHH
T ss_pred -----cHHHHHHHHHHHHHH
Confidence 588999998887764
No 17
>1qqf_A Protein (complement C3DG); alpha-alpha barrel, immune system; 1.45A {Rattus norvegicus} SCOP: a.102.4.4 PDB: 1qsj_A 3d5r_A 2noj_A 2gox_A 3d5s_A 1c3d_A 2xqw_A
Probab=99.65 E-value=7.8e-15 Score=130.92 Aligned_cols=206 Identities=14% Similarity=0.112 Sum_probs=141.4
Q ss_pred HHHHHHHHcccCCCCccccccccchhHHHHHHHHHHHhcCCC---CccCHHHHHHHHHh-ccCCCCcccCCCCC------
Q 021286 8 KHVKYIISVEKKKDSFESVVMEHLRLNGAYWGLTTLDILGKL---DAVDEEDVISWILK-CQDESGGFAGNIGH------ 77 (314)
Q Consensus 8 ~~~~yl~~~~~~~g~~~~~~~~~~~~~~~~~al~~L~lLg~~---~~~~~~~~~~~l~~-~q~~dGGf~~~~~~------ 77 (314)
+.++.+.++|++||+|..+..++..+|.|-+++.+|..+.+. +....+++++||.+ .|++||.|....+.
T Consensus 42 ~g~~~~l~~q~~dGgf~~f~~~~~s~wlTa~v~~~l~~a~~~~~v~~~~i~~a~~~L~~~~Q~~dG~f~~~~~~~~~~~~ 121 (277)
T 1qqf_A 42 KGYTQQLAFKQPISAYAAFNNRPPSTWLTAYVSRVFSLAANLIAIDSQVLCGAVKWLILEKQKPDGVFQEDGPVIHQEMI 121 (277)
T ss_dssp HHHHHHHTTBCTTSCBCSSTTSCCCHHHHHHHHHHHHHHTTTSCCCHHHHHHHHHHHHHHHBCTTSCBCCSSCCSCGGGG
T ss_pred HHHHHHHHhcCCCCCccccCCCCccHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhccCCCCCccCCccccchhhc
Confidence 334448889999999998888888999999999999998853 22346789999996 99999999764321
Q ss_pred -------CCchhhhHHHHHHHHHhcC-----C--CcccHHHHHHHHHhccCCCCCcccCCCCCcccchHHHHHHHHHHhC
Q 021286 78 -------DPHVLYTLSAVQVLALFDK-----V--DILDADKVSNYIVGLQNEDGSFSGDIWGEVDTRFSYIAICCLSILQ 143 (314)
Q Consensus 78 -------~~~~~~T~~al~~L~~l~~-----~--~~~~~~~~~~~l~~~Q~~dGgf~~~~~~~~d~~~ty~al~~l~ll~ 143 (314)
++.+..|.+++.+|...+. . ....++++++||.+++++. .+.........+|++.|
T Consensus 122 g~~~~~~~~~~~lta~vl~aL~~~~~~~~~~~~~~~~~i~~A~~~L~~~~~~~----------~~~y~~a~~ayAl~l~g 191 (277)
T 1qqf_A 122 GGFRNTKEADVSLTAFVLIALQEARDICEGQVNSLPGSINKAGEYLEASYLNL----------QRPYTVAIAGYALALMN 191 (277)
T ss_dssp GGGGSCTTHHHHHHHHHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHHHHHTTC----------CCHHHHHHHHHHHHHTT
T ss_pred CCCCCCccCccchHHHHHHHHHhhhhccccCCCchHHHHHHHHHHHHHHhccC----------CCHHHHHHHHHHHHHcC
Confidence 2345668888888876632 1 1235778999999987641 12222333334456666
Q ss_pred CCCccCHHHHHHHHHhccCCCCCCCCCCCCc-cchhhhHHHHHHHHHhhcCCcCCHHHHHHHHHccCcCCCcccCCCCCC
Q 021286 144 RLDKINVDKAVEYIVSCKNLDGGFGCTPGGE-SHSGQIFCCVGALAIAGALHHVDKDLLGWWLCERQVKSGGLNGRPEKL 222 (314)
Q Consensus 144 ~~~~~~~~~~~~~l~~~q~~dGGf~~~p~~~-s~~~~T~~al~~L~ll~~~~~~~~~~~~~~L~~~Q~~~GGf~~~~~~~ 222 (314)
.. .+.+++.++++.. ||++...++.. .....|.+++.+|...+ +..+.+++++||.++|+.+|||..
T Consensus 192 ~~----~~~~l~~l~~~~~-~~~~w~~~~~~~~~ve~Ta~aLlal~~~~--~~~~~~~~v~wL~~qq~~~Ggw~s----- 259 (277)
T 1qqf_A 192 KL----EEPYLTKFLNTAK-DRNRWEEPGQQLYNVEATSYALLALLLLK--DFDSVPPVVRWLNDERYYGGGYGS----- 259 (277)
T ss_dssp CC----CTTHHHHHHHHSB-TTTBCCCTTCHHHHHHHHHHHHHHHHHTT--CTTSHHHHHHHHHHCCCCTTSTTC-----
T ss_pred Ch----HHHHHHHHHHhcc-CCCCCCCCCCccchhHHHHHHHHHHHhcC--ChhhHHHHHHHHHHccCCCCCeec-----
Confidence 53 3456777777654 66554444422 24556777776665554 445789999999999999999975
Q ss_pred CCchhHHHHHHHHHh
Q 021286 223 PDVCYSWWVLSSLIM 237 (314)
Q Consensus 223 ~d~~yt~~~~~~L~~ 237 (314)
+-.|..++.+|.-
T Consensus 260 --Tq~T~~aL~AL~~ 272 (277)
T 1qqf_A 260 --TQATFMVFQALAQ 272 (277)
T ss_dssp --HHHHHHHHHHHHH
T ss_pred --chHHHHHHHHHHH
Confidence 3566666666643
No 18
>2wy7_A Complement C3D fragment; immune system, immune response, innate immunity, complement inflammatory response; 1.70A {Homo sapiens} PDB: 2wy8_A 3oed_A 3oxu_A 3rj3_A 1ghq_A* 1w2s_A
Probab=99.63 E-value=2.3e-14 Score=129.90 Aligned_cols=207 Identities=14% Similarity=0.093 Sum_probs=140.7
Q ss_pred HHHHHHHHcccCCCCccccccccchhHHHHHHHHHHHhcCCCC---ccCHHHHHHHHHh-ccCCCCcccCCCCC------
Q 021286 8 KHVKYIISVEKKKDSFESVVMEHLRLNGAYWGLTTLDILGKLD---AVDEEDVISWILK-CQDESGGFAGNIGH------ 77 (314)
Q Consensus 8 ~~~~yl~~~~~~~g~~~~~~~~~~~~~~~~~al~~L~lLg~~~---~~~~~~~~~~l~~-~q~~dGGf~~~~~~------ 77 (314)
+.++.+.++|++||+|..+..++..+|.|-+++.+|..+.+.. ....+++++||.+ .|++||.|....+.
T Consensus 58 ~g~~~~l~~q~~dGgf~~f~~~~~s~wlTa~v~~~l~~a~~~~~v~~~~i~~a~~~L~~~~Q~~dGsf~~~~~~~~~~~~ 137 (310)
T 2wy7_A 58 KGYTQQLAFRQPSSAFAAFVKRAPSTWLTAYVVKVFSLAVNLIAIDSQVLCGAVKWLILEKQKPDGVFQEDAPVIHQEMI 137 (310)
T ss_dssp HHHHHHHTTBCTTSCBCSSTTSCCCHHHHHHHHHHHHHHTTTSCCCHHHHHHHHHHHHHHHBCTTSCBCCSSCCSCGGGG
T ss_pred HHHHHHHHhcCCCCCcccCCCCCccHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCCCCccccCCCccCHhhc
Confidence 3444488899999999988877889999999999999988532 2346789999996 99999999764321
Q ss_pred -------CCchhhhHHHHHHHHHhcC-----C--CcccHHHHHHHHHhccCCCCCcccCCCCCcccchHHHHHHHHHHhC
Q 021286 78 -------DPHVLYTLSAVQVLALFDK-----V--DILDADKVSNYIVGLQNEDGSFSGDIWGEVDTRFSYIAICCLSILQ 143 (314)
Q Consensus 78 -------~~~~~~T~~al~~L~~l~~-----~--~~~~~~~~~~~l~~~Q~~dGgf~~~~~~~~d~~~ty~al~~l~ll~ 143 (314)
++.+..|.+++.+|...+. . ....++++++||.++|+.- .+......+.-+|++.|
T Consensus 138 g~~~~~~~~~~~~ta~vl~aL~~~~~~~~~~~~~~~~~i~~A~~~L~~~~~~~----------~~~y~~a~~ayAL~l~g 207 (310)
T 2wy7_A 138 GGLRNNNEKDMALTAFVLISLQEAKDICEEQVNSLPGSITKAGDFLEANYMNL----------QRSYTVAIAGYALAQMG 207 (310)
T ss_dssp GGGTTCSCHHHHHHHHHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHHHHGGGC----------CCHHHHHHHHHHHHHTT
T ss_pred CCcccccccccchHHHHHHHHHhcccccccCCcchHHHHHHHHHHHHHHhhcc----------CCHHHHHHHHHHHHhcC
Confidence 2345668888888876632 1 1235778999999987641 12222222333455566
Q ss_pred CCCccCHHHHHHHHHhccCCCCCCCCCCCCc-cchhhhHHHHHHHHHhhcCCcCCHHHHHHHHHccCcCCCcccCCCCCC
Q 021286 144 RLDKINVDKAVEYIVSCKNLDGGFGCTPGGE-SHSGQIFCCVGALAIAGALHHVDKDLLGWWLCERQVKSGGLNGRPEKL 222 (314)
Q Consensus 144 ~~~~~~~~~~~~~l~~~q~~dGGf~~~p~~~-s~~~~T~~al~~L~ll~~~~~~~~~~~~~~L~~~Q~~~GGf~~~~~~~ 222 (314)
.. .+.+++.|.++.. +|++...++.. .....|.+|+.+|...+ +..+.+++++||.++|+.+|||..
T Consensus 208 ~~----~~~~l~~l~~~~~-~~~~w~~~~~~~~~ve~Ta~aLlal~~~~--~~~~~~~~v~wL~~qq~~~Ggw~s----- 275 (310)
T 2wy7_A 208 RL----KGPLLNKFLTTAK-DKNRWEDPGKQLYNVEATSYALLALLQLK--DFDFVPPVVRWLNEQRYYGGGYGS----- 275 (310)
T ss_dssp CC----CHHHHHHHHHHSB-TTTBCCCSSCHHHHHHHHHHHHHHHHHHT--CTTTHHHHHHHHHHTTCCCCSTTC-----
T ss_pred Cc----HHHHHHHHHHhcc-CCCCCCCCCCcccchHHHHHHHHHHHhcC--ChhhHHHHHHHHHHccCCCCCeec-----
Confidence 53 3556677777653 55554444422 24567777776666554 345789999999999999999964
Q ss_pred CCchhHHHHHHHHHhh
Q 021286 223 PDVCYSWWVLSSLIMI 238 (314)
Q Consensus 223 ~d~~yt~~~~~~L~~l 238 (314)
+..|.+++.+|...
T Consensus 276 --Tq~T~~aL~AL~~y 289 (310)
T 2wy7_A 276 --TQATFMVFQALAQY 289 (310)
T ss_dssp --HHHHHHHHHHHHHH
T ss_pred --cHHHHHHHHHHHHH
Confidence 35566666665543
No 19
>1hzf_A Complement factor C4A; alpha-alpha 6 barrel, immune system; 2.30A {Homo sapiens} SCOP: a.102.4.4
Probab=99.55 E-value=1.7e-13 Score=127.06 Aligned_cols=213 Identities=15% Similarity=0.136 Sum_probs=137.4
Q ss_pred HHHHHHHHHhccCCCCcccCCCCCCCchhhhHHHHHHHHHhcCC---CcccHHHHHHHHHhccCCCCCcccCCC------
Q 021286 54 EEDVISWILKCQDESGGFAGNIGHDPHVLYTLSAVQVLALFDKV---DILDADKVSNYIVGLQNEDGSFSGDIW------ 124 (314)
Q Consensus 54 ~~~~~~~l~~~q~~dGGf~~~~~~~~~~~~T~~al~~L~~l~~~---~~~~~~~~~~~l~~~Q~~dGgf~~~~~------ 124 (314)
.++++++|+++|++||||+.+.+..++.+.|.+++.+|..++.. +...++++++||.+.|++||+|.....
T Consensus 93 i~~g~~~ll~~Q~~dGgf~~~~~~~~~~~lTa~v~~~l~~a~~~~~v~~~~i~~a~~~L~~~Q~~dG~~~~~~~~~~~~~ 172 (367)
T 1hzf_A 93 IQKGYMRIQQFRKADGSYAAWLSRDSSTWLTAFVLKVLSLAQEQVGGSPEKLQETSNWLLSQQQADGSFQDPCPVLDRSM 172 (367)
T ss_dssp HHHHHHHHHTTBCTTSCBCSSTTSCCCHHHHHHHHHHHHHHGGGTCCCHHHHHHHHHHHGGGBCTTSCBCCSSCCSCGGG
T ss_pred HHHHHHHHHhccCCCCCeeccCCCCCcHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhhccCCCcccccccccccc
Confidence 56788899999999999999887778899999999999988743 222468899999999999999976421
Q ss_pred ------CCcccchHHHHHHHHHHhCCC------------CccCHHHHHHHHHhccCCCCCCCCCCCCccchhhhHHHHHH
Q 021286 125 ------GEVDTRFSYIAICCLSILQRL------------DKINVDKAVEYIVSCKNLDGGFGCTPGGESHSGQIFCCVGA 186 (314)
Q Consensus 125 ------~~~d~~~ty~al~~l~ll~~~------------~~~~~~~~~~~l~~~q~~dGGf~~~p~~~s~~~~T~~al~~ 186 (314)
.++++..|.+++.+|...+.. ....++++++||.++...+ . .+. ++ -|+.+
T Consensus 173 ~gg~~~~~~~~~lTA~vl~aL~~~g~~~~~~~~~~~~~~~~~~i~ra~~yL~~~~~~~--~-------~~~-y~-~Al~a 241 (367)
T 1hzf_A 173 QGGLVGNDETVALTAFVTIALHHGLAVFQDEGAEPLKQRVEASISKASSFLGEKASAG--L-------LGA-HA-AAITA 241 (367)
T ss_dssp GGGGSSTTHHHHHHHHHHHHHHHHHTTCCTTTTHHHHHHHHHHHHHHHHHHHHHHHHT--C-------CCH-HH-HHHHH
T ss_pred cCCCCCCcccccchHHHHHHHHhhhccccccccchhhhhhHHHHHHHHHHHHHhhhcc--c-------CCH-HH-HHHHH
Confidence 112344556677776554431 0124678999998872211 0 111 21 23333
Q ss_pred --HHHhhcCCcCCHHHHHHHHHccCcCCCc---ccCCCC---------------------CC-CCchhHHHHHHHHHhhc
Q 021286 187 --LAIAGALHHVDKDLLGWWLCERQVKSGG---LNGRPE---------------------KL-PDVCYSWWVLSSLIMID 239 (314)
Q Consensus 187 --L~ll~~~~~~~~~~~~~~L~~~Q~~~GG---f~~~~~---------------------~~-~d~~yt~~~~~~L~~l~ 239 (314)
|.+.+.. ....+...+-|.+.-..+|+ |..... .. .++.-|-|++.+|...+
T Consensus 242 yAL~l~~~~-~~~~~~~~~~L~~~a~~~~~~~~W~~~~~s~~~~~~~~~~~~~~~~~~~~~~s~~vE~TAyaLLall~~~ 320 (367)
T 1hzf_A 242 YALTLTKAP-ADLRGVAHNNLMAMAQETGDNLYWGSVTGSQSNAVSPTPAPRNPSDPMPQAPALWIETTAYALLHLLLHE 320 (367)
T ss_dssp HHHHHTTCC-HHHHHHHHHHHHTTCEECSSCEECC------------------------CCCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHhcCCc-HHHHHHHHHHHHHHhhhcCCCCccCCCCCcccccccccccccccccccCCCccchhHHHHHHHHHHHhcc
Confidence 3334322 11133455666665444444 432110 01 15677888888876554
Q ss_pred cCcccChHHHHHHHHhhcCCCCCCcCCCCCCCCCHHHHHHHhhhhhcc
Q 021286 240 RVHWINKDKLVKFILDCQDMENGGISDRPDDAVDVFHTYFGVAGLSLL 287 (314)
Q Consensus 240 ~~~~~~~~~~~~~l~~~Q~~~~GGf~~~p~~~~d~~~T~~al~~L~l~ 287 (314)
.. ....+++++||.+.|+ .+|||.. ...|..||-+|+..
T Consensus 321 ~~-~~~~~~iv~WL~~qrn-~~Ggw~s-------TqdTvvAL~AL~~y 359 (367)
T 1hzf_A 321 GK-AEMADQASAWLTRQGS-FQGGFRS-------TQDTVIALDALSAY 359 (367)
T ss_dssp CS-SHHHHHHHHHHHHHTT-STTCSCS-------HHHHHHHHHHHHHH
T ss_pred Cc-hhhhHHHHHHHHhCcC-CCCCccc-------HHHHHHHHHHHHHH
Confidence 22 2335789999999999 7999984 57888888887654
No 20
>1hzf_A Complement factor C4A; alpha-alpha 6 barrel, immune system; 2.30A {Homo sapiens} SCOP: a.102.4.4
Probab=99.53 E-value=1.7e-13 Score=126.98 Aligned_cols=212 Identities=15% Similarity=0.116 Sum_probs=139.5
Q ss_pred HHHHHHHHHHcccCCCCccccccccchhHHHHHHHHHHHhcCCC---CccCHHHHHHHHHhccCCCCcccCCCC------
Q 021286 6 ADKHVKYIISVEKKKDSFESVVMEHLRLNGAYWGLTTLDILGKL---DAVDEEDVISWILKCQDESGGFAGNIG------ 76 (314)
Q Consensus 6 ~~~~~~yl~~~~~~~g~~~~~~~~~~~~~~~~~al~~L~lLg~~---~~~~~~~~~~~l~~~q~~dGGf~~~~~------ 76 (314)
.++.++++.+.|++||+|.++..+..+++.|.+++.+|..+++. +....+++++||.+.|++||+|.....
T Consensus 93 i~~g~~~ll~~Q~~dGgf~~~~~~~~~~~lTa~v~~~l~~a~~~~~v~~~~i~~a~~~L~~~Q~~dG~~~~~~~~~~~~~ 172 (367)
T 1hzf_A 93 IQKGYMRIQQFRKADGSYAAWLSRDSSTWLTAFVLKVLSLAQEQVGGSPEKLQETSNWLLSQQQADGSFQDPCPVLDRSM 172 (367)
T ss_dssp HHHHHHHHHTTBCTTSCBCSSTTSCCCHHHHHHHHHHHHHHGGGTCCCHHHHHHHHHHHGGGBCTTSCBCCSSCCSCGGG
T ss_pred HHHHHHHHHhccCCCCCeeccCCCCCcHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhhccCCCcccccccccccc
Confidence 46778889999999999998877777899999999999988743 233578899999999999999976421
Q ss_pred ------CCCchhhhHHHHHHHHHhcCC--C----------cccHHHHHHHHHhc--cCCCCCcccCCCCCcccchHHHHH
Q 021286 77 ------HDPHVLYTLSAVQVLALFDKV--D----------ILDADKVSNYIVGL--QNEDGSFSGDIWGEVDTRFSYIAI 136 (314)
Q Consensus 77 ------~~~~~~~T~~al~~L~~l~~~--~----------~~~~~~~~~~l~~~--Q~~dGgf~~~~~~~~d~~~ty~al 136 (314)
.++.+..|.+++.+|...+.. + ...++++++||.+. ++. .++.....+.
T Consensus 173 ~gg~~~~~~~~~lTA~vl~aL~~~g~~~~~~~~~~~~~~~~~~i~ra~~yL~~~~~~~~-----------~~~y~~Al~a 241 (367)
T 1hzf_A 173 QGGLVGNDETVALTAFVTIALHHGLAVFQDEGAEPLKQRVEASISKASSFLGEKASAGL-----------LGAHAAAITA 241 (367)
T ss_dssp GGGGSSTTHHHHHHHHHHHHHHHHHTTCCTTTTHHHHHHHHHHHHHHHHHHHHHHHHTC-----------CCHHHHHHHH
T ss_pred cCCCCCCcccccchHHHHHHHHhhhccccccccchhhhhhHHHHHHHHHHHHHhhhccc-----------CCHHHHHHHH
Confidence 123467788888888765531 1 12467899999876 332 1222222233
Q ss_pred HHHHHhCCCCccCHHHHHHHHHhccCCCCC---CCCCC---------------------CCc-cchhhhHHHHHHHHHhh
Q 021286 137 CCLSILQRLDKINVDKAVEYIVSCKNLDGG---FGCTP---------------------GGE-SHSGQIFCCVGALAIAG 191 (314)
Q Consensus 137 ~~l~ll~~~~~~~~~~~~~~l~~~q~~dGG---f~~~p---------------------~~~-s~~~~T~~al~~L~ll~ 191 (314)
-+|++.+.. ....+++.+-|++.-..+|+ |+... ... .....|.+|+-+|...+
T Consensus 242 yAL~l~~~~-~~~~~~~~~~L~~~a~~~~~~~~W~~~~~s~~~~~~~~~~~~~~~~~~~~~~s~~vE~TAyaLLall~~~ 320 (367)
T 1hzf_A 242 YALTLTKAP-ADLRGVAHNNLMAMAQETGDNLYWGSVTGSQSNAVSPTPAPRNPSDPMPQAPALWIETTAYALLHLLLHE 320 (367)
T ss_dssp HHHHHTTCC-HHHHHHHHHHHHTTCEECSSCEECC------------------------CCCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHhcCCc-HHHHHHHHHHHHHHhhhcCCCCccCCCCCcccccccccccccccccccCCCccchhHHHHHHHHHHHhcc
Confidence 345555542 12234456666665444444 54321 111 25667878877665443
Q ss_pred cCCcCCHHHHHHHHHccCcCCCcccCCCCCCCCchhHHHHHHHHHh
Q 021286 192 ALHHVDKDLLGWWLCERQVKSGGLNGRPEKLPDVCYSWWVLSSLIM 237 (314)
Q Consensus 192 ~~~~~~~~~~~~~L~~~Q~~~GGf~~~~~~~~d~~yt~~~~~~L~~ 237 (314)
.+.....+.++||.++|+.+|||.. +-.|..++.+|..
T Consensus 321 -~~~~~~~~iv~WL~~qrn~~Ggw~s-------TqdTvvAL~AL~~ 358 (367)
T 1hzf_A 321 -GKAEMADQASAWLTRQGSFQGGFRS-------TQDTVIALDALSA 358 (367)
T ss_dssp -CSSHHHHHHHHHHHHHTTSTTCSCS-------HHHHHHHHHHHHH
T ss_pred -CchhhhHHHHHHHHhCcCCCCCccc-------HHHHHHHHHHHHH
Confidence 2333477899999999999999964 3566666666654
No 21
>2hr0_B Complement C3 alpha' chain; complement component C3B, immune system; HET: THC; 2.26A {Homo sapiens} PDB: 2icf_B* 2wii_B* 2win_B* 3g6j_B 3l5n_B* 2a73_B* 2i07_B* 2xwj_B* 2xwb_B* 2a74_C* 2ice_C* 2qki_C* 3l3o_F* 3nms_C* 3nsa_C* 3ohx_C* 3t4a_C 2ice_B* 3l3o_B* 3nms_B* ...
Probab=99.37 E-value=1.4e-11 Score=126.71 Aligned_cols=208 Identities=18% Similarity=0.159 Sum_probs=138.4
Q ss_pred HHHHHHHHhccCCCCcccCCCCCCCchhhhHHHHHHHHHhcCCCccc---HHHHHHHHHh-ccCCCCCcccCCC------
Q 021286 55 EDVISWILKCQDESGGFAGNIGHDPHVLYTLSAVQVLALFDKVDILD---ADKVSNYIVG-LQNEDGSFSGDIW------ 124 (314)
Q Consensus 55 ~~~~~~l~~~q~~dGGf~~~~~~~~~~~~T~~al~~L~~l~~~~~~~---~~~~~~~l~~-~Q~~dGgf~~~~~------ 124 (314)
+..++++++.|++||||+.+++.+++.+.|.+++.+|..+.....++ ++++++||.+ .|.+||+|.....
T Consensus 302 ~~g~~rll~~Q~~DGsfs~w~~~~~s~wlTAyv~~~l~~a~~~~~v~~~~i~~al~~L~~~~Q~~dG~f~~~~~~~~~~m 381 (915)
T 2hr0_B 302 KKGYTQQLAFRQPSSAFAAFVKRAPSTWLTAYVVKVFSLAVNLIAIDSQVLCGAVKWLILEKQKPDGVFQEDAPVIHQEM 381 (915)
T ss_dssp HHHHHHHGGGCCTTTCCBSSSSSCBCHHHHHHHHHHHHTTTTTSCCCHHHHHHHHHHHHHHHBCTTSCBCCCSCCSSSCC
T ss_pred HHHHHHHHHhhcCCCCccccCCCCCcceehHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHhhccCCCccccCccccchhh
Confidence 45667789999999999999888899999999999999887543333 6789999995 9999999964321
Q ss_pred --C-----CcccchHHHHHHHHHHhCCC-------CccCHHHHHHHHHhccCCCCCCCCCCCCccchhhhHHHHHHHHHh
Q 021286 125 --G-----EVDTRFSYIAICCLSILQRL-------DKINVDKAVEYIVSCKNLDGGFGCTPGGESHSGQIFCCVGALAIA 190 (314)
Q Consensus 125 --~-----~~d~~~ty~al~~l~ll~~~-------~~~~~~~~~~~l~~~q~~dGGf~~~p~~~s~~~~T~~al~~L~ll 190 (314)
+ +.++..|..++.+|...+.. ....++++++||.+.+..- .+.........+|.+.
T Consensus 382 ~gg~~~~~~~~~~ltAyvl~aL~~~g~~~~~~~~~~~~~i~~A~~yL~~~~~~~----------~~~y~~a~layAL~l~ 451 (915)
T 2hr0_B 382 IGGLRNNNEKDMALTAFVLISLQEAKDICEEQVNSLPGSITKAGDFLEANYMNL----------QRSYTVAIAGYALAQM 451 (915)
T ss_dssp CCSCCCCTTHHHHHHHHHHHHHHHHTTTSTTTCTTHHHHHHHHHHHHHHHGGGC----------CSHHHHHHHHHHHHTT
T ss_pred cCCccCccccccccHHHHHHHHHhcccccccCcccchHHHHHHHHHHHHhhhcc----------CCHHHHHHHHHHHHHc
Confidence 1 12344445566666665542 1224678999999987541 1111111222244555
Q ss_pred hcCCcCCHHHHHHHHHccCcCCCc-ccCCCCCCCCchhHHHHHHHHHhhccCcccChHHHHHHHHhhcCCCCCCcCCCCC
Q 021286 191 GALHHVDKDLLGWWLCERQVKSGG-LNGRPEKLPDVCYSWWVLSSLIMIDRVHWINKDKLVKFILDCQDMENGGISDRPD 269 (314)
Q Consensus 191 ~~~~~~~~~~~~~~L~~~Q~~~GG-f~~~~~~~~d~~yt~~~~~~L~~l~~~~~~~~~~~~~~l~~~Q~~~~GGf~~~p~ 269 (314)
|.. .+.+++.|.++.. +|. |........++.-|.|++.+|...+.. ....++++||.+.|+ .+|||..
T Consensus 452 g~~----a~~~l~~L~~~~~-~~~~w~~~~~~~~~ve~TayaLlall~~~~~--~~~~~~v~wL~~qq~-~~Ggw~S--- 520 (915)
T 2hr0_B 452 GRL----KGPLLNKFLTTAK-DKNRWEDPGKQLYNVEATSYALLALLQLKDF--DFVPPVVRWLNEQRY-YGGGYGS--- 520 (915)
T ss_dssp TCC----CHHHHHHHHHTSB-TTTBCCCSSCHHHHHHHHHHHHHHHHHTTCT--TTHHHHHHHHHTCCC-SSSSCCS---
T ss_pred CCh----HHHHHHHHHhhcc-CCCCCCCCCCCccchHHHHHHHHHHHhcCCh--hhHHHHHHHHHhccc-CCCCccc---
Confidence 543 4456677766443 343 433211123567788888888877754 346779999999998 6899974
Q ss_pred CCCCHHHHHHHhhhhhcc
Q 021286 270 DAVDVFHTYFGVAGLSLL 287 (314)
Q Consensus 270 ~~~d~~~T~~al~~L~l~ 287 (314)
...|.+||-||+..
T Consensus 521 ----TQdT~~Al~AL~~y 534 (915)
T 2hr0_B 521 ----TQATFMVFQALAQY 534 (915)
T ss_dssp ----HHHHHHHHHHHHHH
T ss_pred ----hhhHHHHHHHHHHH
Confidence 46788888887654
No 22
>2pn5_A TEP1R, thioester-containing protein I; FULL-length mature peptide, immune system; HET: NAG; 2.70A {Anopheles gambiae}
Probab=99.35 E-value=2.5e-11 Score=129.47 Aligned_cols=230 Identities=12% Similarity=0.136 Sum_probs=145.1
Q ss_pred hhHHHHHHHHHHHhcCCCCccCH-------HHHHHHHHhccCCCCcccCCCCCCCchhhhHHHHHHHHHhcCCCc-cc--
Q 021286 32 RLNGAYWGLTTLDILGKLDAVDE-------EDVISWILKCQDESGGFAGNIGHDPHVLYTLSAVQVLALFDKVDI-LD-- 101 (314)
Q Consensus 32 ~~~~~~~al~~L~lLg~~~~~~~-------~~~~~~l~~~q~~dGGf~~~~~~~~~~~~T~~al~~L~~l~~~~~-~~-- 101 (314)
......+++.-|.-.+......+ ++++++++++|++||||+++++.+++.+.|.+++.+|..+..... ++
T Consensus 845 ~~~p~~~~~~yl~~~~~~~~~~~~~~~~~i~~g~~rll~~q~~dGgf~~f~~~~~s~~lTa~v~~~l~~a~~~~~~v~~~ 924 (1325)
T 2pn5_A 845 KFVPNILVLDYLHAIGSKEQHLIDKATNLLRQGYQNQMRYRQTDGSFGLWETTNGSVFLTAFVGTSMQTAVKYISDIDAA 924 (1325)
T ss_dssp GTHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHGGGBCTTSCBCSSSSSCCCHHHHHHHHHHHHHHTTTCSCSCHH
T ss_pred HHhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHhcCCCCCCeeccCCCCCCeeehHHHHHHHHHHHhhEEcCCHH
Confidence 33334445554554444332223 345567799999999999999999999999999999999864322 33
Q ss_pred -HHHHHHHHHhccCCCCCcccCCC-------CCcccchHHHHHHHHHHhCC--CC---ccCHHHHHHHHHhccCC-CCCC
Q 021286 102 -ADKVSNYIVGLQNEDGSFSGDIW-------GEVDTRFSYIAICCLSILQR--LD---KINVDKAVEYIVSCKNL-DGGF 167 (314)
Q Consensus 102 -~~~~~~~l~~~Q~~dGgf~~~~~-------~~~d~~~ty~al~~l~ll~~--~~---~~~~~~~~~~l~~~q~~-dGGf 167 (314)
++++++||.+.|++||+|..... +..+.+.+|++....+|+.. .. ...++++++||.++++. +++|
T Consensus 925 ~l~~a~~~L~~~q~~dG~f~~~~~~~~~~~~g~~~~~~~~tayvl~aL~~~g~~~~~~~~~i~~a~~~L~~~~~~~~~~~ 1004 (1325)
T 2pn5_A 925 MVEKALDWLASKQHFSGRFDKAGAEYHKEMQGGLRNGVALTSYVLMALLENDIAKAKHAEVIQKGMTYLSNQFGSINNAY 1004 (1325)
T ss_dssp HHHHHHHHHHHTCCTTSCCCCCSCCSCHHHHCCSSTTHHHHHHHHHHHHTCHHHHHHTHHHHHHHHHHHHHHGGGCCCHH
T ss_pred HHHHHHHHHHhhhccCCCccccccccChhhcCcccCCccccHHHHHHHhhCcccccccHHHHHHHHHHHHHhhcccCCHH
Confidence 67899999999999999965421 12223344444333344432 11 13467899999998864 3222
Q ss_pred CCCCCCccchhhhHHHHHHHHHhhcCCcCCHHHHHHHHHccCc--CCC-cccCCCCCCCCchhHHHHHHHHHhhccCccc
Q 021286 168 GCTPGGESHSGQIFCCVGALAIAGALHHVDKDLLGWWLCERQV--KSG-GLNGRPEKLPDVCYSWWVLSSLIMIDRVHWI 244 (314)
Q Consensus 168 ~~~p~~~s~~~~T~~al~~L~ll~~~~~~~~~~~~~~L~~~Q~--~~G-Gf~~~~~~~~d~~yt~~~~~~L~~l~~~~~~ 244 (314)
+ ..++..+|.+.+.. ..+++++.|.+... .++ +... ...+++.-|-|++.+|...+.. .
T Consensus 1005 ~-----------~a~~ayaL~l~g~~---~~~~~l~~L~~~~~~~~~~~~~~w--~~~s~ve~tA~aLlall~~~~~--~ 1066 (1325)
T 2pn5_A 1005 D-----------LSIATYAMMLNGHT---MKEEALNKLIDMSFIDADKNERFW--NTTNPIETTAYALLSFVMAEKY--T 1066 (1325)
T ss_dssp H-----------HHHHHHHHHHHTCT---THHHHHHHHHHTCEEETTTTEEEC--CSSSHHHHHHHHHHHHHHTTCH--H
T ss_pred H-----------HHHHHHHHHhcCCc---hHHHHHHHHHhhhhhccCCCcccC--CCCCchHHHHHHHHHHhhhccc--h
Confidence 1 11122245555543 35667777776432 221 1111 1224667777888777666543 2
Q ss_pred ChHHHHHHHHhhcCCCCCCcCCCCCCCCCHHHHHHHhhhhhcc
Q 021286 245 NKDKLVKFILDCQDMENGGISDRPDDAVDVFHTYFGVAGLSLL 287 (314)
Q Consensus 245 ~~~~~~~~l~~~Q~~~~GGf~~~p~~~~d~~~T~~al~~L~l~ 287 (314)
...++++||.+.|+ .+|||.. ...|.++|.||+..
T Consensus 1067 ~~~~~v~wL~~q~~-~~g~w~s-------Tq~T~~aL~AL~~y 1101 (1325)
T 2pn5_A 1067 DGIPVMNWLVNQRY-VTGSFPS-------TQDTFVGLKALTKM 1101 (1325)
T ss_dssp HHHHHHHHHHTTCC-TTSSCSS-------HHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHhccC-CCCCccc-------hHHHHHHHHHHHHH
Confidence 35678999999888 6899874 67888888887655
No 23
>4acq_A Alpha-2-macroglobulin; hydrolase inhibitor, proteinase inhibitor, irreversible PROT inhibitor, conformational change, blood plasma inhibitor; HET: MEQ NAG MAN; 4.30A {Homo sapiens}
Probab=99.27 E-value=1.5e-10 Score=123.79 Aligned_cols=217 Identities=18% Similarity=0.151 Sum_probs=144.0
Q ss_pred HHHHHHHHhccCCCCcccCCCC----CCCchhhhHHHHHHHHHhcCC---CcccHHHHHHHHHhccCCCCCcccC-C---
Q 021286 55 EDVISWILKCQDESGGFAGNIG----HDPHVLYTLSAVQVLALFDKV---DILDADKVSNYIVGLQNEDGSFSGD-I--- 123 (314)
Q Consensus 55 ~~~~~~l~~~q~~dGGf~~~~~----~~~~~~~T~~al~~L~~l~~~---~~~~~~~~~~~l~~~Q~~dGgf~~~-~--- 123 (314)
++.+++++++|++||||+.+++ ..++.+-|.+++.+|..+... +...++++++||.+.|++||+|... +
T Consensus 986 ~~g~~~ll~~q~~dGgf~~f~~~~~~~~~s~wlTAyv~~~l~~a~~~~~v~~~~l~~a~~wL~~~Q~~dG~f~~~g~~~~ 1065 (1451)
T 4acq_A 986 NTGYQRQLNYKHYDGSYSTFGERYGRNQGNTWLTAFVLKTFAQARAYIFIDEAHITQALIWLSQRQKDNGCFRSSGSLLN 1065 (1451)
T ss_dssp HHHHHHHGGGBCTTSCBCSSTTGGGCCCCCHHHHHHHHHHHHHHTTTSCCCTHHHHHHHHHHHHTEETTTEECCCCCCSC
T ss_pred HHHHHHHHhhcCCCCCeeeccCCCCCCCCchhHHHHHHHHHHHhhhhcccCHHHHHHHHHHHHhhcccCCcccccCcccc
Confidence 4677899999999999998864 458899999999999988743 2334788999999999999999732 1
Q ss_pred ----CC-CcccchHHHHHHHHHHhCCC-CccCHHHHHHHHHhccCC--CCCCCCCCCCccchhhhHHHHHHHHHhhcCCc
Q 021286 124 ----WG-EVDTRFSYIAICCLSILQRL-DKINVDKAVEYIVSCKNL--DGGFGCTPGGESHSGQIFCCVGALAIAGALHH 195 (314)
Q Consensus 124 ----~~-~~d~~~ty~al~~l~ll~~~-~~~~~~~~~~~l~~~q~~--dGGf~~~p~~~s~~~~T~~al~~L~ll~~~~~ 195 (314)
++ +.++..|..++.+|...|.. ....++++++||.++... +|.- ..+.........||+++|..
T Consensus 1066 ~~m~gg~~~~~~lTAyvl~aL~~~g~~~~~~~i~~A~~~L~~~~~~~~~~~~------~~~~y~~AllAyAlal~g~~-- 1137 (1451)
T 4acq_A 1066 NAIKGGVEDEVTLSAYITIALLEIPLTVTHPVVRNALFCLESAWKTAQEGDH------GSHVYTKALLAYAFALAGNQ-- 1137 (1451)
T ss_dssp GGGCCSCSCHHHHHHHHHHHHHHTTCCTTCHHHHHHHHHHHHHHHHHTSSCS------SSTHHHHHHHHHHHHHHTCH--
T ss_pred hhhcCCCCCCccchHHHHHHHHHcCCCCCCHHHHHHHHHHHHhhhhcccccc------cCChHHHHHHHHHHHhcCCh--
Confidence 11 24555677788888777753 234578999999876211 1211 11222333344456666542
Q ss_pred CCHHHHHHHHHccCcCCCc---ccCCCC-------------CCCCchhHHHHHHHHHhhccC----cccChHHHHHHHHh
Q 021286 196 VDKDLLGWWLCERQVKSGG---LNGRPE-------------KLPDVCYSWWVLSSLIMIDRV----HWINKDKLVKFILD 255 (314)
Q Consensus 196 ~~~~~~~~~L~~~Q~~~GG---f~~~~~-------------~~~d~~yt~~~~~~L~~l~~~----~~~~~~~~~~~l~~ 255 (314)
...+.+++-|.+....+|| |..... ...++.-|-|++-+|..++.. +......+++||.+
T Consensus 1138 ~~~~~~l~~L~~~a~~~~~~~~W~~~~~~~~~~~~~~~~~~~s~~vE~TayaLLall~~~~~~~~~d~~~a~~iv~WL~~ 1217 (1451)
T 4acq_A 1138 DKRKEVLKSLNEEAVKKDNSVHWERPQKPKAPVGHFYEPQAPSAEVEMTSYVLLAYLTAQPAPTSEDLTSATNIVKWITK 1217 (1451)
T ss_dssp HHHHHHHHHHHHHCCBCSSCBCCCCCCCSSSCSSSTTCCCTTGGGGTHHHHHHHHHHCCSSCCCHHHHHHHHTTHHHHTT
T ss_pred hHHHHHHHHHHHHhhccCCceecCCCCCCccccccccccCCchHHHHHHHHHHHHHhhccccccccchhhHHHHHHHHHH
Confidence 1234466666665555666 432110 123567787888887776521 12235679999999
Q ss_pred hcCCCCCCcCCCCCCCCCHHHHHHHhhhhhcc
Q 021286 256 CQDMENGGISDRPDDAVDVFHTYFGVAGLSLL 287 (314)
Q Consensus 256 ~Q~~~~GGf~~~p~~~~d~~~T~~al~~L~l~ 287 (314)
-|+ ..|||.. ...|..||-||+-.
T Consensus 1218 qr~-~~Ggf~S-------TQdTv~aL~ALa~Y 1241 (1451)
T 4acq_A 1218 QQN-AQGGFSS-------TQDTVVALHALSKY 1241 (1451)
T ss_dssp CCC-TTSCCSS-------HHHHHHHHHHHHHH
T ss_pred cCC-CCCCccc-------HHHHHHHHHHHHHH
Confidence 888 7899985 56788888887755
No 24
>2hr0_B Complement C3 alpha' chain; complement component C3B, immune system; HET: THC; 2.26A {Homo sapiens} PDB: 2icf_B* 2wii_B* 2win_B* 3g6j_B 3l5n_B* 2a73_B* 2i07_B* 2xwj_B* 2xwb_B* 2a74_C* 2ice_C* 2qki_C* 3l3o_F* 3nms_C* 3nsa_C* 3ohx_C* 3t4a_C 2ice_B* 3l3o_B* 3nms_B* ...
Probab=99.24 E-value=2.4e-10 Score=117.52 Aligned_cols=206 Identities=13% Similarity=0.100 Sum_probs=135.6
Q ss_pred HHHHHHHHcccCCCCccccccccchhHHHHHHHHHHHhcCCC---CccCHHHHHHHHHh-ccCCCCcccCCCC-------
Q 021286 8 KHVKYIISVEKKKDSFESVVMEHLRLNGAYWGLTTLDILGKL---DAVDEEDVISWILK-CQDESGGFAGNIG------- 76 (314)
Q Consensus 8 ~~~~yl~~~~~~~g~~~~~~~~~~~~~~~~~al~~L~lLg~~---~~~~~~~~~~~l~~-~q~~dGGf~~~~~------- 76 (314)
+.++.+...|++||+|.+|..++..+|.|-|++..|..+... +....+++++||.+ .|.+||.|.....
T Consensus 303 ~g~~rll~~Q~~DGsfs~w~~~~~s~wlTAyv~~~l~~a~~~~~v~~~~i~~al~~L~~~~Q~~dG~f~~~~~~~~~~m~ 382 (915)
T 2hr0_B 303 KGYTQQLAFRQPSSAFAAFVKRAPSTWLTAYVVKVFSLAVNLIAIDSQVLCGAVKWLILEKQKPDGVFQEDAPVIHQEMI 382 (915)
T ss_dssp HHHHHHGGGCCTTTCCBSSSSSCBCHHHHHHHHHHHHTTTTTSCCCHHHHHHHHHHHHHHHBCTTSCBCCCSCCSSSCCC
T ss_pred HHHHHHHHhhcCCCCccccCCCCCcceehHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHhhccCCCccccCccccchhhc
Confidence 344556678999999999988888999999999999988743 22346889999995 9999999864321
Q ss_pred -C-----CCchhhhHHHHHHHHHhcCC-----C--cccHHHHHHHHHhccCCCCCcccCCCCCcccchHHHHHHHHHHhC
Q 021286 77 -H-----DPHVLYTLSAVQVLALFDKV-----D--ILDADKVSNYIVGLQNEDGSFSGDIWGEVDTRFSYIAICCLSILQ 143 (314)
Q Consensus 77 -~-----~~~~~~T~~al~~L~~l~~~-----~--~~~~~~~~~~l~~~Q~~dGgf~~~~~~~~d~~~ty~al~~l~ll~ 143 (314)
. ++.+..|.+++.+|...+.. . ...++++++||.+.+..- .+.........+|++.|
T Consensus 383 gg~~~~~~~~~~ltAyvl~aL~~~g~~~~~~~~~~~~~i~~A~~yL~~~~~~~----------~~~y~~a~layAL~l~g 452 (915)
T 2hr0_B 383 GGLRNNNEKDMALTAFVLISLQEAKDICEEQVNSLPGSITKAGDFLEANYMNL----------QRSYTVAIAGYALAQMG 452 (915)
T ss_dssp CSCCCCTTHHHHHHHHHHHHHHHHTTTSTTTCTTHHHHHHHHHHHHHHHGGGC----------CSHHHHHHHHHHHHTTT
T ss_pred CCccCccccccccHHHHHHHHHhcccccccCcccchHHHHHHHHHHHHhhhcc----------CCHHHHHHHHHHHHHcC
Confidence 0 23466677888888777532 1 123568999999876531 11222222223455555
Q ss_pred CCCccCHHHHHHHHHhccCCCCC-CCCCCCCccchhhhHHHHHHHHHhhcCCcCCHHHHHHHHHccCcCCCcccCCCCCC
Q 021286 144 RLDKINVDKAVEYIVSCKNLDGG-FGCTPGGESHSGQIFCCVGALAIAGALHHVDKDLLGWWLCERQVKSGGLNGRPEKL 222 (314)
Q Consensus 144 ~~~~~~~~~~~~~l~~~q~~dGG-f~~~p~~~s~~~~T~~al~~L~ll~~~~~~~~~~~~~~L~~~Q~~~GGf~~~~~~~ 222 (314)
.. .+++++.|.++.. +|. |....+...+...|.+|+.+|...+. .....++++||.++|+.+|||..
T Consensus 453 ~~----a~~~l~~L~~~~~-~~~~w~~~~~~~~~ve~TayaLlall~~~~--~~~~~~~v~wL~~qq~~~Ggw~S----- 520 (915)
T 2hr0_B 453 RL----KGPLLNKFLTTAK-DKNRWEDPGKQLYNVEATSYALLALLQLKD--FDFVPPVVRWLNEQRYYGGGYGS----- 520 (915)
T ss_dssp CC----CHHHHHHHHHTSB-TTTBCCCSSCHHHHHHHHHHHHHHHHHTTC--TTTHHHHHHHHHTCCCSSSSCCS-----
T ss_pred Ch----HHHHHHHHHhhcc-CCCCCCCCCCCccchHHHHHHHHHHHhcCC--hhhHHHHHHHHHhcccCCCCccc-----
Confidence 43 3566777777543 444 43221111256678888877666554 34578899999999999999964
Q ss_pred CCchhHHHHHHHHHh
Q 021286 223 PDVCYSWWVLSSLIM 237 (314)
Q Consensus 223 ~d~~yt~~~~~~L~~ 237 (314)
+-.|..++.||..
T Consensus 521 --TQdT~~Al~AL~~ 533 (915)
T 2hr0_B 521 --TQATFMVFQALAQ 533 (915)
T ss_dssp --HHHHHHHHHHHHH
T ss_pred --hhhHHHHHHHHHH
Confidence 2456666666644
No 25
>4acq_A Alpha-2-macroglobulin; hydrolase inhibitor, proteinase inhibitor, irreversible PROT inhibitor, conformational change, blood plasma inhibitor; HET: MEQ NAG MAN; 4.30A {Homo sapiens}
Probab=99.19 E-value=2.3e-10 Score=122.30 Aligned_cols=218 Identities=9% Similarity=0.018 Sum_probs=142.8
Q ss_pred HHHHHHHHHcccCCCCcccccc----ccchhHHHHHHHHHHHhcCCC---CccCHHHHHHHHHhccCCCCcccCCC----
Q 021286 7 DKHVKYIISVEKKKDSFESVVM----EHLRLNGAYWGLTTLDILGKL---DAVDEEDVISWILKCQDESGGFAGNI---- 75 (314)
Q Consensus 7 ~~~~~yl~~~~~~~g~~~~~~~----~~~~~~~~~~al~~L~lLg~~---~~~~~~~~~~~l~~~q~~dGGf~~~~---- 75 (314)
++.++.+...|++||+|.+|.. ++...|.|-|++..|..+... ++...+++++||.+.|++||.|....
T Consensus 986 ~~g~~~ll~~q~~dGgf~~f~~~~~~~~~s~wlTAyv~~~l~~a~~~~~v~~~~l~~a~~wL~~~Q~~dG~f~~~g~~~~ 1065 (1451)
T 4acq_A 986 NTGYQRQLNYKHYDGSYSTFGERYGRNQGNTWLTAFVLKTFAQARAYIFIDEAHITQALIWLSQRQKDNGCFRSSGSLLN 1065 (1451)
T ss_dssp HHHHHHHGGGBCTTSCBCSSTTGGGCCCCCHHHHHHHHHHHHHHTTTSCCCTHHHHHHHHHHHHTEETTTEECCCCCCSC
T ss_pred HHHHHHHHhhcCCCCCeeeccCCCCCCCCchhHHHHHHHHHHHhhhhcccCHHHHHHHHHHHHhhcccCCcccccCcccc
Confidence 4566777778999999998853 457899999999999988743 33457899999999999999996321
Q ss_pred -----CCCCchhhhHHHHHHHHHhcCC-CcccHHHHHHHHHhccCCCCCcccCCCCCcccchHHHHHHHHHHhCCCCccC
Q 021286 76 -----GHDPHVLYTLSAVQVLALFDKV-DILDADKVSNYIVGLQNEDGSFSGDIWGEVDTRFSYIAICCLSILQRLDKIN 149 (314)
Q Consensus 76 -----~~~~~~~~T~~al~~L~~l~~~-~~~~~~~~~~~l~~~Q~~dGgf~~~~~~~~d~~~ty~al~~l~ll~~~~~~~ 149 (314)
|.+.++..|.+++.+|...+.. ....++++++||++.... +.. .....+......+..+|++.|. ...
T Consensus 1066 ~~m~gg~~~~~~lTAyvl~aL~~~g~~~~~~~i~~A~~~L~~~~~~---~~~-~~~~~~~y~~AllAyAlal~g~--~~~ 1139 (1451)
T 4acq_A 1066 NAIKGGVEDEVTLSAYITIALLEIPLTVTHPVVRNALFCLESAWKT---AQE-GDHGSHVYTKALLAYAFALAGN--QDK 1139 (1451)
T ss_dssp GGGCCSCSCHHHHHHHHHHHHHHTTCCTTCHHHHHHHHHHHHHHHH---HTS-SCSSSTHHHHHHHHHHHHHHTC--HHH
T ss_pred hhhcCCCCCCccchHHHHHHHHHcCCCCCCHHHHHHHHHHHHhhhh---ccc-ccccCChHHHHHHHHHHHhcCC--hhH
Confidence 1235677899999999988742 233478899999865211 100 0011233334444456677775 223
Q ss_pred HHHHHHHHHhccCCCCC---CCCCCC-------------CccchhhhHHHHHHHHHhhcC----CcCCHHHHHHHHHccC
Q 021286 150 VDKAVEYIVSCKNLDGG---FGCTPG-------------GESHSGQIFCCVGALAIAGAL----HHVDKDLLGWWLCERQ 209 (314)
Q Consensus 150 ~~~~~~~l~~~q~~dGG---f~~~p~-------------~~s~~~~T~~al~~L~ll~~~----~~~~~~~~~~~L~~~Q 209 (314)
.+.+++-|.+.-..+|+ |+.... .......|.+|+-+|..++.. +.....+.++||.++|
T Consensus 1140 ~~~~l~~L~~~a~~~~~~~~W~~~~~~~~~~~~~~~~~~~s~~vE~TayaLLall~~~~~~~~~d~~~a~~iv~WL~~qr 1219 (1451)
T 4acq_A 1140 RKEVLKSLNEEAVKKDNSVHWERPQKPKAPVGHFYEPQAPSAEVEMTSYVLLAYLTAQPAPTSEDLTSATNIVKWITKQQ 1219 (1451)
T ss_dssp HHHHHHHHHHHCCBCSSCBCCCCCCCSSSCSSSTTCCCTTGGGGTHHHHHHHHHHCCSSCCCHHHHHHHHTTHHHHTTCC
T ss_pred HHHHHHHHHHHhhccCCceecCCCCCCccccccccccCCchHHHHHHHHHHHHHhhccccccccchhhHHHHHHHHHHcC
Confidence 44567777776666666 543211 123456788888666555321 2223667899999999
Q ss_pred cCCCcccCCCCCCCCchhHHHHHHHHHh
Q 021286 210 VKSGGLNGRPEKLPDVCYSWWVLSSLIM 237 (314)
Q Consensus 210 ~~~GGf~~~~~~~~d~~yt~~~~~~L~~ 237 (314)
+..|||.. +-.|..++.||.-
T Consensus 1220 ~~~Ggf~S-------TQdTv~aL~ALa~ 1240 (1451)
T 4acq_A 1220 NAQGGFSS-------TQDTVVALHALSK 1240 (1451)
T ss_dssp CTTSCCSS-------HHHHHHHHHHHHH
T ss_pred CCCCCccc-------HHHHHHHHHHHHH
Confidence 99999965 2445556665543
No 26
>2pn5_A TEP1R, thioester-containing protein I; FULL-length mature peptide, immune system; HET: NAG; 2.70A {Anopheles gambiae}
Probab=99.09 E-value=7.6e-10 Score=118.11 Aligned_cols=205 Identities=14% Similarity=0.079 Sum_probs=132.2
Q ss_pred HHHHHHHcccCCCCccccccccchhHHHHHHHHHHHhcCCC----CccCHHHHHHHHHhccCCCCcccCCCC--------
Q 021286 9 HVKYIISVEKKKDSFESVVMEHLRLNGAYWGLTTLDILGKL----DAVDEEDVISWILKCQDESGGFAGNIG-------- 76 (314)
Q Consensus 9 ~~~yl~~~~~~~g~~~~~~~~~~~~~~~~~al~~L~lLg~~----~~~~~~~~~~~l~~~q~~dGGf~~~~~-------- 76 (314)
.++.+..+|++||+|.+|..++..+|.|.+++.+|..+.+. +....+++++||.+.|++||.|.....
T Consensus 877 g~~rll~~q~~dGgf~~f~~~~~s~~lTa~v~~~l~~a~~~~~~v~~~~l~~a~~~L~~~q~~dG~f~~~~~~~~~~~~g 956 (1325)
T 2pn5_A 877 GYQNQMRYRQTDGSFGLWETTNGSVFLTAFVGTSMQTAVKYISDIDAAMVEKALDWLASKQHFSGRFDKAGAEYHKEMQG 956 (1325)
T ss_dssp HHHHHGGGBCTTSCBCSSSSSCCCHHHHHHHHHHHHHHTTTCSCSCHHHHHHHHHHHHHTCCTTSCCCCCSCCSCHHHHC
T ss_pred HHHHHHhcCCCCCCeeccCCCCCCeeehHHHHHHHHHHHhhEEcCCHHHHHHHHHHHHhhhccCCCccccccccChhhcC
Confidence 33444778999999999988888999999999999998643 223467899999999999999854321
Q ss_pred C-CCchhhhHHHHHHHHHhcCC---CcccHHHHHHHHHhccCC-CCCcccCCCCCcccchHHHHHHHHHHhCCCCccCHH
Q 021286 77 H-DPHVLYTLSAVQVLALFDKV---DILDADKVSNYIVGLQNE-DGSFSGDIWGEVDTRFSYIAICCLSILQRLDKINVD 151 (314)
Q Consensus 77 ~-~~~~~~T~~al~~L~~l~~~---~~~~~~~~~~~l~~~Q~~-dGgf~~~~~~~~d~~~ty~al~~l~ll~~~~~~~~~ 151 (314)
. ......|.+++.+|...+.. ....++++++||.+.|.. +++|.. ..+.-+|++.+.. ..+
T Consensus 957 ~~~~~~~~tayvl~aL~~~g~~~~~~~~~i~~a~~~L~~~~~~~~~~~~~-----------a~~ayaL~l~g~~---~~~ 1022 (1325)
T 2pn5_A 957 GLRNGVALTSYVLMALLENDIAKAKHAEVIQKGMTYLSNQFGSINNAYDL-----------SIATYAMMLNGHT---MKE 1022 (1325)
T ss_dssp CSSTTHHHHHHHHHHHHTCHHHHHHTHHHHHHHHHHHHHHGGGCCCHHHH-----------HHHHHHHHHHTCT---THH
T ss_pred cccCCccccHHHHHHHhhCcccccccHHHHHHHHHHHHHhhcccCCHHHH-----------HHHHHHHHhcCCc---hHH
Confidence 1 12344455555555433321 123467899999997764 333321 1112255666653 366
Q ss_pred HHHHHHHhccC--CCC-CCCCCCCCccchhhhHHHHHHHHHhhcCCcCCHHHHHHHHHccCcCCCcccCCCCCCCCchhH
Q 021286 152 KAVEYIVSCKN--LDG-GFGCTPGGESHSGQIFCCVGALAIAGALHHVDKDLLGWWLCERQVKSGGLNGRPEKLPDVCYS 228 (314)
Q Consensus 152 ~~~~~l~~~q~--~dG-Gf~~~p~~~s~~~~T~~al~~L~ll~~~~~~~~~~~~~~L~~~Q~~~GGf~~~~~~~~d~~yt 228 (314)
++++.|++... .++ +..+ ...+....|.+|+.+|...+ +.....+.++||+++|..+|||.. +-.|
T Consensus 1023 ~~l~~L~~~~~~~~~~~~~~w--~~~s~ve~tA~aLlall~~~--~~~~~~~~v~wL~~q~~~~g~w~s-------Tq~T 1091 (1325)
T 2pn5_A 1023 EALNKLIDMSFIDADKNERFW--NTTNPIETTAYALLSFVMAE--KYTDGIPVMNWLVNQRYVTGSFPS-------TQDT 1091 (1325)
T ss_dssp HHHHHHHHTCEEETTTTEEEC--CSSSHHHHHHHHHHHHHHTT--CHHHHHHHHHHHHTTCCTTSSCSS-------HHHH
T ss_pred HHHHHHHhhhhhccCCCcccC--CCCCchHHHHHHHHHHhhhc--cchhhHHHHHHHHhccCCCCCccc-------hHHH
Confidence 67777776532 221 1111 22356777878776655544 233467899999999999999853 4677
Q ss_pred HHHHHHHHhh
Q 021286 229 WWVLSSLIMI 238 (314)
Q Consensus 229 ~~~~~~L~~l 238 (314)
.|++.+|...
T Consensus 1092 ~~aL~AL~~y 1101 (1325)
T 2pn5_A 1092 FVGLKALTKM 1101 (1325)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 7877777654
No 27
>2b39_A C3; thioester, immune defense, immune system; HET: NAG BMA; 3.00A {Bos taurus}
Probab=99.02 E-value=1.5e-08 Score=110.13 Aligned_cols=207 Identities=17% Similarity=0.164 Sum_probs=130.9
Q ss_pred HHHHHHhccCCCCcccCCCCCCCchhhhHHHHHHHHHhcCCCcc---cHHHHHHHHHh-ccCCCCCcccCC--------C
Q 021286 57 VISWILKCQDESGGFAGNIGHDPHVLYTLSAVQVLALFDKVDIL---DADKVSNYIVG-LQNEDGSFSGDI--------W 124 (314)
Q Consensus 57 ~~~~l~~~q~~dGGf~~~~~~~~~~~~T~~al~~L~~l~~~~~~---~~~~~~~~l~~-~Q~~dGgf~~~~--------~ 124 (314)
.++-+++.|++||+|+++++.+++.+-|.+++.+|..+.....+ -+.++++||.+ .|++||+|.... +
T Consensus 1051 g~~r~l~~q~~dGsfs~w~~~~~s~wLTAyv~~~l~~A~~~~~v~~~~l~~a~~~L~~~~q~~~g~f~~~~~~~~~~~~g 1130 (1661)
T 2b39_A 1051 GYTQQLAFRQKSSAYAAFQYRPPSTWLTAYVVKVFALAANLIAIDSKDLCETVKWLILEKQKPDGIFQEDGPVIHQEMIG 1130 (1661)
T ss_dssp HHHHHHTTBCTTSCBCSSTTSCCCHHHHHHHHHHHHHHTTTSCCCHHHHHHHHHHHHHHTBCTTSCBCCCSCCCCTTSCC
T ss_pred HHHHHHHhhcCCCCccccCCCCCchhhhHHHHHHHHhhhhcccCCHHHHHHHHHHhhHhhCCCCCccccccceechhhcC
Confidence 34445678999999999988889999999999999998754333 36789999995 999999996321 1
Q ss_pred C-----CcccchHHHHHHHHHHhCCC-------CccCHHHHHHHHHhccCCCCCCCCCCCCccchhhhHHHHHHHHHhhc
Q 021286 125 G-----EVDTRFSYIAICCLSILQRL-------DKINVDKAVEYIVSCKNLDGGFGCTPGGESHSGQIFCCVGALAIAGA 192 (314)
Q Consensus 125 ~-----~~d~~~ty~al~~l~ll~~~-------~~~~~~~~~~~l~~~q~~dGGf~~~p~~~s~~~~T~~al~~L~ll~~ 192 (314)
+ +.++..+..++.+|...+.. ....++++++||.+.... + .+.........+|++.|.
T Consensus 1131 g~~~~~~~~~~ltAyvl~aL~~~~~~~~~~~~~~~~~i~~a~~yL~~~~~~---~-------~~~y~~A~layAL~l~g~ 1200 (1661)
T 2b39_A 1131 GFRDTREKDVSLTAFVLIALHEAKDICEAQVNSLGRSIAKAGDFLENHYRE---L-------RRPYTVAIAAYALALLGK 1200 (1661)
T ss_dssp CTTCCTTSSHHHHHHHHHHHHHTTTTTTTTCSSHHHHHHHHHHHHHHHTTT---C-------CSHHHHHHHHHHHHHTTC
T ss_pred CccccccCccccHHHHHHHHHhccccccccCcchhHHHHHHHHHHHHhhhc---c-------CCHHHHHHHHHHHHHcCC
Confidence 1 11344444455555544432 112456889999775321 1 111112222234555554
Q ss_pred CCcCCHHHHHHHHHccCcCCCcccCCCCCCCCchhHHHHHHHHHhhccCcccChHHHHHHHHhhcCCCCCCcCCCCCCCC
Q 021286 193 LHHVDKDLLGWWLCERQVKSGGLNGRPEKLPDVCYSWWVLSSLIMIDRVHWINKDKLVKFILDCQDMENGGISDRPDDAV 272 (314)
Q Consensus 193 ~~~~~~~~~~~~L~~~Q~~~GGf~~~~~~~~d~~yt~~~~~~L~~l~~~~~~~~~~~~~~l~~~Q~~~~GGf~~~p~~~~ 272 (314)
. .+.+++.|.+......-|....+...++.-|-|++.++...+.. .....+++||.+.|+ ..|||..
T Consensus 1201 ~----a~~~l~~L~~~~~~~~~W~~~~~~~~~vE~tayaLlall~~~~~--~~~~~iv~wL~~qr~-~~gg~~S------ 1267 (1661)
T 2b39_A 1201 L----EGDRLTKFLNTAKEKNRWEEPNQKLYNVEATSYALLALLARKDY--DTTPPVVRWLNEQRY-YGGGYGS------ 1267 (1661)
T ss_dssp C----CHHHHHHHHHHSBTTTBCCCSSCHHHHHHHHHHHHHHHHHHTCT--TTSHHHHHHHHHCCT-BTTBBCS------
T ss_pred c----HHHHHHHHHhhccCCCCCCCCCCCcchHHHHHHHHHHHHhcCCh--hhHHHHHHHHHhccc-CCCCccc------
Confidence 3 35567777765442223432211123566677777777766643 335678999999888 6799985
Q ss_pred CHHHHHHHhhhhhcc
Q 021286 273 DVFHTYFGVAGLSLL 287 (314)
Q Consensus 273 d~~~T~~al~~L~l~ 287 (314)
...|.+||-||+-.
T Consensus 1268 -TqdT~~Al~AL~~y 1281 (1661)
T 2b39_A 1268 -TQATFMVFQALAQY 1281 (1661)
T ss_dssp -HHHHHHHHHHHHHH
T ss_pred -chHHHHHHHHHHHH
Confidence 57788888887654
No 28
>4fxk_B Complement C4-A alpha chain; immune system, proteolytic cascade; HET: NAG BMA; 3.60A {Homo sapiens} PDB: 4fxg_B*
Probab=98.95 E-value=2e-07 Score=94.24 Aligned_cols=237 Identities=15% Similarity=0.088 Sum_probs=134.8
Q ss_pred hhHHHHHHHHHHHhcCC---CCccCHHH-------HHHHHHhccCCCCcccCCCCCCCchhhhHHHHHHHHHhcCCCcc-
Q 021286 32 RLNGAYWGLTTLDILGK---LDAVDEED-------VISWILKCQDESGGFAGNIGHDPHVLYTLSAVQVLALFDKVDIL- 100 (314)
Q Consensus 32 ~~~~~~~al~~L~lLg~---~~~~~~~~-------~~~~l~~~q~~dGGf~~~~~~~~~~~~T~~al~~L~~l~~~~~~- 100 (314)
.+.-..|++.-|...+. .....+++ .++-+++.|++||+|+++++.+++.+-|.+++.+|..+.....+
T Consensus 338 ~~~p~i~v~~yl~~t~q~~~l~~~~~~~a~~~l~~gyqrll~~q~~DGsfs~w~~~~~s~wLTAyV~~~l~~A~~~i~id 417 (767)
T 4fxk_B 338 YLAPTLAASRYLDKTEQWSTLPPETKDHAVDLIQKGYMRIQQFRKADGSYAAWLSRDSSTWLTAFVLKVLSLAQEQVGGS 417 (767)
T ss_dssp GTHHHHHHHHHHHHTCTTTTSCSSHHHHHHHHHHHHHHHHTTTBCTTSCBBSSSSSCBCHHHHHHHHHHHHHTCSSSSCC
T ss_pred hhhhhhhHHHHHHhhhhhcccCHHHHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCCchhHHHHHHHHHHHHhhcCcc
Confidence 44445677777776664 22222333 44556678999999999998899999999999999998764333
Q ss_pred --cHHHHHHHHHhccCCCCCcccCC--------CC----CcccchHHHHHHHHHHhCCCC------------ccCHHHHH
Q 021286 101 --DADKVSNYIVGLQNEDGSFSGDI--------WG----EVDTRFSYIAICCLSILQRLD------------KINVDKAV 154 (314)
Q Consensus 101 --~~~~~~~~l~~~Q~~dGgf~~~~--------~~----~~d~~~ty~al~~l~ll~~~~------------~~~~~~~~ 154 (314)
.+..++.||.+.|.+||+|.... ++ +.++..|.+++.+|...+... ...+.++.
T Consensus 418 ~~~i~~a~~wL~~~Q~~~G~f~e~g~~~~~~~~gg~~~~~~~~~ltAyvliaL~e~~~~~~~~~~~~~~~~~~~~i~ka~ 497 (767)
T 4fxk_B 418 PEKLQETSNWLLSQQQADGSFQDPCPVLDRSMQGGLVGNDETVALTAFVTIALHHGLAVFQDEGAEPLKQRVEASISKAN 497 (767)
T ss_dssp HHHHHHHHHHHHHTBCTTSCBCCSSCSCCCCCCSSTTTHHHHHHHHHHHHHHHHHHHTTSTTCCCCSHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhhhhcccchhcchhcchhhcCCcCCCccchhHHHHHHHHHHhcCCccccchhhhhHhHHHHHHHHHH
Confidence 36778999999999999996321 11 122333444445554333211 01356788
Q ss_pred HHHHhccCCCCCCCCCCCCccchhhhHHHHHHHHHhhcCCcCCHHHHHHHHHccCcCCCcccC--C-CCC----------
Q 021286 155 EYIVSCKNLDGGFGCTPGGESHSGQIFCCVGALAIAGALHHVDKDLLGWWLCERQVKSGGLNG--R-PEK---------- 221 (314)
Q Consensus 155 ~~l~~~q~~dGGf~~~p~~~s~~~~T~~al~~L~ll~~~~~~~~~~~~~~L~~~Q~~~GGf~~--~-~~~---------- 221 (314)
.||.+....+ +. +......+..+|++.+... ...+.+..-|.+....+|+... . ...
T Consensus 498 ~~L~~~~~~~--~~-------~~y~~Al~ayaL~l~~~~~-~~~~~~~~~L~~~a~~~~~~~~w~~~~~~~~~~~~~~~~ 567 (767)
T 4fxk_B 498 SFLGEKASAG--LL-------GAHAAAITAYALSLTKAPV-DLLGVAHNNLMAMAQETGDNLYWGSVTGSQSNAVSPTPA 567 (767)
T ss_dssp HHHHHHTTSC--CC-------CHHHHHHHHHHHHHHTCTT-HHHHHHHHHHHTTCCBCSSCBCCCCCCCCCGGGGCCSSS
T ss_pred HHHHHHhhcc--cC-------CHHHHHHHHHHHHHcCCcH-HHHHHHHHHHHhhcEEcCCeeEEeccCCCcccccccccc
Confidence 8887664331 11 1111111222344444321 1123344455544333332111 0 000
Q ss_pred ------------CCCchhHHHHHHHHHhhccCcccChHHHHHHHHhhcCCCCCCcCCCCCCCCCHHHHHHHhhhhhcc
Q 021286 222 ------------LPDVCYSWWVLSSLIMIDRVHWINKDKLVKFILDCQDMENGGISDRPDDAVDVFHTYFGVAGLSLL 287 (314)
Q Consensus 222 ------------~~d~~yt~~~~~~L~~l~~~~~~~~~~~~~~l~~~Q~~~~GGf~~~p~~~~d~~~T~~al~~L~l~ 287 (314)
..++.-|-+++-++...... ....+.+++||.+-|+ ..|||.. ...|..||-||+-.
T Consensus 568 ~~~~~~~~~~~~s~~VEttayaLla~l~~~~~-~~~a~~iv~WL~~Qr~-~~Ggf~S-------TQdTv~AL~ALa~y 636 (767)
T 4fxk_B 568 PRNPSDPMPQAPALWIETTAYALLHLLLHEGK-AEMADQASAWLTRQGS-FQGGFRS-------TQDTVIALDALSAY 636 (767)
T ss_dssp CCCSSSCBCCCCHHHHHHHHHHHHHHHHHTSS-CHHHHHHHHHHHHTCC-TTSSCSS-------HHHHHHHHHHHHHH
T ss_pred cccccccccccchHHHHHHHHHHHHHHhcCCc-hhHHHHHHHHHHHhhc-CCCCCcC-------HHHHHHHHHHHHHH
Confidence 01234444454444333221 1225679999999888 6899974 67888888887665
No 29
>4fxk_B Complement C4-A alpha chain; immune system, proteolytic cascade; HET: NAG BMA; 3.60A {Homo sapiens} PDB: 4fxg_B*
Probab=98.92 E-value=5.4e-08 Score=98.35 Aligned_cols=214 Identities=16% Similarity=0.139 Sum_probs=128.0
Q ss_pred HHHHHHHHH-------HcccCCCCccccccccchhHHHHHHHHHHHhcCCC---CccCHHHHHHHHHhccCCCCcccCCC
Q 021286 6 ADKHVKYII-------SVEKKKDSFESVVMEHLRLNGAYWGLTTLDILGKL---DAVDEEDVISWILKCQDESGGFAGNI 75 (314)
Q Consensus 6 ~~~~~~yl~-------~~~~~~g~~~~~~~~~~~~~~~~~al~~L~lLg~~---~~~~~~~~~~~l~~~q~~dGGf~~~~ 75 (314)
+++..+||. +.|++||+|.+|..++..+|.|.|++.+|..+... ++....++++||.+.|.+||.|...-
T Consensus 363 ~~~a~~~l~~gyqrll~~q~~DGsfs~w~~~~~s~wLTAyV~~~l~~A~~~i~id~~~i~~a~~wL~~~Q~~~G~f~e~g 442 (767)
T 4fxk_B 363 KDHAVDLIQKGYMRIQQFRKADGSYAAWLSRDSSTWLTAFVLKVLSLAQEQVGGSPEKLQETSNWLLSQQQADGSFQDPC 442 (767)
T ss_dssp HHHHHHHHHHHHHHHTTTBCTTSCBBSSSSSCBCHHHHHHHHHHHHHTCSSSSCCHHHHHHHHHHHHHTBCTTSCBCCSS
T ss_pred HHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCCchhHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHhhhhcccchhcc
Confidence 345555554 46889999999988888999999999999998754 23346788999999999999985321
Q ss_pred ------------CCCCchhhhHHHHHHHHHhcCC--C----------cccHHHHHHHHHhccCCCCCcccCCCCCcccch
Q 021286 76 ------------GHDPHVLYTLSAVQVLALFDKV--D----------ILDADKVSNYIVGLQNEDGSFSGDIWGEVDTRF 131 (314)
Q Consensus 76 ------------~~~~~~~~T~~al~~L~~l~~~--~----------~~~~~~~~~~l~~~Q~~dGgf~~~~~~~~d~~~ 131 (314)
+.+.++..|.+.+.+|...+.. + ...+.++++||......+ + .+.+.
T Consensus 443 ~~~~~~~~gg~~~~~~~~~ltAyvliaL~e~~~~~~~~~~~~~~~~~~~~i~ka~~~L~~~~~~~--~-------~~~y~ 513 (767)
T 4fxk_B 443 PVLDRSMQGGLVGNDETVALTAFVTIALHHGLAVFQDEGAEPLKQRVEASISKANSFLGEKASAG--L-------LGAHA 513 (767)
T ss_dssp CSCCCCCCSSTTTHHHHHHHHHHHHHHHHHHHTTSTTCCCCSHHHHHHHHHHHHHHHHHHHTTSC--C-------CCHHH
T ss_pred hhcchhhcCCcCCCccchhHHHHHHHHHHhcCCccccchhhhhHhHHHHHHHHHHHHHHHHhhcc--c-------CCHHH
Confidence 1123456677777777654321 0 012567888887654321 1 12222
Q ss_pred HHHHHHHHHHhCCCCccCHHHHHHHHHhccCCCCCCC---CCCCC---------------------c-cchhhhHHHHHH
Q 021286 132 SYIAICCLSILQRLDKINVDKAVEYIVSCKNLDGGFG---CTPGG---------------------E-SHSGQIFCCVGA 186 (314)
Q Consensus 132 ty~al~~l~ll~~~~~~~~~~~~~~l~~~q~~dGGf~---~~p~~---------------------~-s~~~~T~~al~~ 186 (314)
...+.-+|++.+.. ....+.+.+-|.+....+|+.. ...+. . .....|.+|+-+
T Consensus 514 ~Al~ayaL~l~~~~-~~~~~~~~~~L~~~a~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~VEttayaLla 592 (767)
T 4fxk_B 514 AAITAYALSLTKAP-VDLLGVAHNNLMAMAQETGDNLYWGSVTGSQSNAVSPTPAPRNPSDPMPQAPALWIETTAYALLH 592 (767)
T ss_dssp HHHHHHHHHHHTCT-THHHHHHHHHHHTTCCBCSSCBCCCCCCCCCGGGGCCSSSCCCSSSCBCCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCc-HHHHHHHHHHHHhhcEEcCCeeEEeccCCCcccccccccccccccccccccchHHHHHHHHHHHH
Confidence 22222345555542 2223344555555444333321 11110 0 124456666544
Q ss_pred HHHhhcCCcCCHHHHHHHHHccCcCCCcccCCCCCCCCchhHHHHHHHHHh
Q 021286 187 LAIAGALHHVDKDLLGWWLCERQVKSGGLNGRPEKLPDVCYSWWVLSSLIM 237 (314)
Q Consensus 187 L~ll~~~~~~~~~~~~~~L~~~Q~~~GGf~~~~~~~~d~~yt~~~~~~L~~ 237 (314)
+.... .+.....+.++||.++|+..|||.. +--|.+++.||..
T Consensus 593 ~l~~~-~~~~~a~~iv~WL~~Qr~~~Ggf~S-------TQdTv~AL~ALa~ 635 (767)
T 4fxk_B 593 LLLHE-GKAEMADQASAWLTRQGSFQGGFRS-------TQDTVIALDALSA 635 (767)
T ss_dssp HHHHT-SSCHHHHHHHHHHHHTCCTTSSCSS-------HHHHHHHHHHHHH
T ss_pred HHhcC-CchhHHHHHHHHHHHhhcCCCCCcC-------HHHHHHHHHHHHH
Confidence 43322 2233467899999999999999964 3556777777654
No 30
>1r76_A Pectate lyase; A-helical structure; 2.65A {Azospirillum irakense} SCOP: a.102.5.1
Probab=98.91 E-value=2.5e-09 Score=98.33 Aligned_cols=161 Identities=13% Similarity=0.100 Sum_probs=95.9
Q ss_pred HHHHHHHHHHcccCCCCcccccc--------------------------------------ccchhHHHHHHHHHHHhcC
Q 021286 6 ADKHVKYIISVEKKKDSFESVVM--------------------------------------EHLRLNGAYWGLTTLDILG 47 (314)
Q Consensus 6 ~~~~~~yl~~~~~~~g~~~~~~~--------------------------------------~~~~~~~~~~al~~L~lLg 47 (314)
.++..+.|...|.++|||..... ...|...|.-.+..|+-+.
T Consensus 83 A~~iAd~ll~~Q~~~GGW~kn~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~T~DnddTa~vl~aL~rv~ 162 (408)
T 1r76_A 83 ARHVADVIVSFQTPAGGWGKNQPRDGALRLPGQHYTGENVAKVKSGSNDLDAARDRDWHYVGTIDNDATVTEIRFLAQVV 162 (408)
T ss_dssp HHHHHHHHHHHCCTTSCCCSSCCSSSCCCCTTCCSSCCCCCCCC---------CCCCCSSSSBCGGGTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHccccCCCCCCccccccccchhhhhcccccccccccccccchhhcccccCCCCCCCCchHHHHHHHHHHHH
Confidence 46778899999999999954210 0012223555555555443
Q ss_pred CC-----C---ccCHHHHHHHHHhccCCCCcccCCCCCC----Cch----hhhHHHHHHHHHhcCC--------------
Q 021286 48 KL-----D---AVDEEDVISWILKCQDESGGFAGNIGHD----PHV----LYTLSAVQVLALFDKV-------------- 97 (314)
Q Consensus 48 ~~-----~---~~~~~~~~~~l~~~q~~dGGf~~~~~~~----~~~----~~T~~al~~L~~l~~~-------------- 97 (314)
.. . ..-.+++++||+++|+++|||+.+.-.. .++ ..|...+..|..++..
T Consensus 163 ~~~t~~~~~~y~~Ai~Rgl~wlL~mQ~~nGGWpqFdpdn~~y~~~IpFnDDvt~rvle~L~~~~~~~~~~~~~~~~~~~~ 242 (408)
T 1r76_A 163 SQLAPEEAAPYRDAALKGIEYLLASQFPNGGWPQVWPLEGGYHDAITYNDDALVHVAELLSDIAAGRDGFGFVPPAIRTR 242 (408)
T ss_dssp HHSCGGGCHHHHHHHHHHHHHHHHHSCTTSCCBSBSSCCCGGGGSEECGGGHHHHHHHHHHHHHHTCTTCTTSCHHHHHH
T ss_pred hhccccccHHHHHHHHHHHHHHHHccCCCCCCcCcCccccccccCCCcCcHHHHHHHHHHHHHHhccCcccccchhhhhh
Confidence 21 1 1235789999999999999998764211 111 2355566666665430
Q ss_pred CcccHHHHHHHHHhccCC-CCCcccCCCCCc-----------------ccchHHHHHHHHHHhCCCCc-----cCHHHHH
Q 021286 98 DILDADKVSNYIVGLQNE-DGSFSGDIWGEV-----------------DTRFSYIAICCLSILQRLDK-----INVDKAV 154 (314)
Q Consensus 98 ~~~~~~~~~~~l~~~Q~~-dGgf~~~~~~~~-----------------d~~~ty~al~~l~ll~~~~~-----~~~~~~~ 154 (314)
....++++++||.+.|.+ ||+|. . ++.. -+...-++-.++.+++.... ..+++++
T Consensus 243 ~~~av~Rgi~~Ll~~Qe~~dGsw~-r-Wg~qY~ygT~~Pa~aRsYE~psLs~~esa~il~~LM~~~~~~~~~~~aI~~Av 320 (408)
T 1r76_A 243 ALEATNAAIHCIVETQVVQDGKRL-G-WGQQHDALTLRPTSARNFEPAALSSTESARILLFLMEIEAPSDAVKQAIRGGV 320 (408)
T ss_dssp HHHHHHHHHHHHHHHSCEETTEEC-C-CCSEECTTTCSBCCCSTTCCSCEEHHHHHHHHHHHTTSSSCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhcccCCccc-c-hhcccccccCcchhhhccCCccccHHHHHHHHHHHccCCCCCHHHHHHHHHHH
Confidence 112367899999999999 99986 2 1111 22222223233445554321 1478999
Q ss_pred HHHHhccCCCCCCC
Q 021286 155 EYIVSCKNLDGGFG 168 (314)
Q Consensus 155 ~~l~~~q~~dGGf~ 168 (314)
+||.++|++||+|-
T Consensus 321 ~WL~s~Q~~dg~w~ 334 (408)
T 1r76_A 321 AWLNTSVIRDRAWV 334 (408)
T ss_dssp HHHHHSCCCC----
T ss_pred HHHHHhhcCCCcee
Confidence 99999999999997
No 31
>2b39_A C3; thioester, immune defense, immune system; HET: NAG BMA; 3.00A {Bos taurus}
Probab=98.85 E-value=1e-07 Score=103.60 Aligned_cols=200 Identities=14% Similarity=0.178 Sum_probs=127.9
Q ss_pred HHcccCCCCccccccccchhHHHHHHHHHHHhcCCC---CccCHHHHHHHHHh-ccCCCCcccCCC--------C-----
Q 021286 14 ISVEKKKDSFESVVMEHLRLNGAYWGLTTLDILGKL---DAVDEEDVISWILK-CQDESGGFAGNI--------G----- 76 (314)
Q Consensus 14 ~~~~~~~g~~~~~~~~~~~~~~~~~al~~L~lLg~~---~~~~~~~~~~~l~~-~q~~dGGf~~~~--------~----- 76 (314)
...|++||+|.+|..++.++|.|-|++..|..+.+. +....+++++||.+ .|+++|.|.... +
T Consensus 1056 l~~q~~dGsfs~w~~~~~s~wLTAyv~~~l~~A~~~~~v~~~~l~~a~~~L~~~~q~~~g~f~~~~~~~~~~~~gg~~~~ 1135 (1661)
T 2b39_A 1056 LAFRQKSSAYAAFQYRPPSTWLTAYVVKVFALAANLIAIDSKDLCETVKWLILEKQKPDGIFQEDGPVIHQEMIGGFRDT 1135 (1661)
T ss_dssp HTTBCTTSCBCSSTTSCCCHHHHHHHHHHHHHHTTTSCCCHHHHHHHHHHHHHHTBCTTSCBCCCSCCCCTTSCCCTTCC
T ss_pred HHhhcCCCCccccCCCCCchhhhHHHHHHHHhhhhcccCCHHHHHHHHHHhhHhhCCCCCccccccceechhhcCCcccc
Confidence 346889999999987788999999999999998753 23346889999995 999999885321 1
Q ss_pred CCCchhhhHHHHHHHHHhcCC-----Cc--ccHHHHHHHHHhccCCCCCcccCCCCCcccchHHHHHHHHHHhCCCCccC
Q 021286 77 HDPHVLYTLSAVQVLALFDKV-----DI--LDADKVSNYIVGLQNEDGSFSGDIWGEVDTRFSYIAICCLSILQRLDKIN 149 (314)
Q Consensus 77 ~~~~~~~T~~al~~L~~l~~~-----~~--~~~~~~~~~l~~~Q~~dGgf~~~~~~~~d~~~ty~al~~l~ll~~~~~~~ 149 (314)
.++++..|.+++.+|...+.. .. ..++++++||.+.... + .++.....+..+|++.|..
T Consensus 1136 ~~~~~~ltAyvl~aL~~~~~~~~~~~~~~~~~i~~a~~yL~~~~~~---~-------~~~y~~A~layAL~l~g~~---- 1201 (1661)
T 2b39_A 1136 REKDVSLTAFVLIALHEAKDICEAQVNSLGRSIAKAGDFLENHYRE---L-------RRPYTVAIAAYALALLGKL---- 1201 (1661)
T ss_dssp TTSSHHHHHHHHHHHHHTTTTTTTTCSSHHHHHHHHHHHHHHHTTT---C-------CSHHHHHHHHHHHHHTTCC----
T ss_pred ccCccccHHHHHHHHHhccccccccCcchhHHHHHHHHHHHHhhhc---c-------CCHHHHHHHHHHHHHcCCc----
Confidence 122566677888888766532 11 1356789999775322 1 1222222233456666653
Q ss_pred HHHHHHHHHhccCCCCC-CCCCCCCccchhhhHHHHHHHHHhhcCCcCCHHHHHHHHHccCcCCCcccCCCCCCCCchhH
Q 021286 150 VDKAVEYIVSCKNLDGG-FGCTPGGESHSGQIFCCVGALAIAGALHHVDKDLLGWWLCERQVKSGGLNGRPEKLPDVCYS 228 (314)
Q Consensus 150 ~~~~~~~l~~~q~~dGG-f~~~p~~~s~~~~T~~al~~L~ll~~~~~~~~~~~~~~L~~~Q~~~GGf~~~~~~~~d~~yt 228 (314)
.+++++.|.+... +|. |....+...+...|.+|+.++...+. .....+.++||.++|+.+|||.. +-.|
T Consensus 1202 a~~~l~~L~~~~~-~~~~W~~~~~~~~~vE~tayaLlall~~~~--~~~~~~iv~wL~~qr~~~gg~~S-------TqdT 1271 (1661)
T 2b39_A 1202 EGDRLTKFLNTAK-EKNRWEEPNQKLYNVEATSYALLALLARKD--YDTTPPVVRWLNEQRYYGGGYGS-------TQAT 1271 (1661)
T ss_dssp CHHHHHHHHHHSB-TTTBCCCSSCHHHHHHHHHHHHHHHHHHTC--TTTSHHHHHHHHHCCTBTTBBCS-------HHHH
T ss_pred HHHHHHHHHhhcc-CCCCCCCCCCCcchHHHHHHHHHHHHhcCC--hhhHHHHHHHHHhcccCCCCccc-------chHH
Confidence 3566777776554 333 33221111245567777766655543 33456788999999988899965 2445
Q ss_pred HHHHHHHHh
Q 021286 229 WWVLSSLIM 237 (314)
Q Consensus 229 ~~~~~~L~~ 237 (314)
..++.||..
T Consensus 1272 ~~Al~AL~~ 1280 (1661)
T 2b39_A 1272 FMVFQALAQ 1280 (1661)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 566666544
No 32
>1r76_A Pectate lyase; A-helical structure; 2.65A {Azospirillum irakense} SCOP: a.102.5.1
Probab=98.84 E-value=8.2e-09 Score=94.93 Aligned_cols=160 Identities=16% Similarity=0.024 Sum_probs=96.9
Q ss_pred HHHHHHHHHhccCCCCcccCCCC--------------------------------------CCCchhhhHHHHHHHHHhc
Q 021286 54 EEDVISWILKCQDESGGFAGNIG--------------------------------------HDPHVLYTLSAVQVLALFD 95 (314)
Q Consensus 54 ~~~~~~~l~~~q~~dGGf~~~~~--------------------------------------~~~~~~~T~~al~~L~~l~ 95 (314)
.+++.+.|+..|.++|||.-.-. ..++...|...+.+|..+.
T Consensus 83 A~~iAd~ll~~Q~~~GGW~kn~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~T~DnddTa~vl~aL~rv~ 162 (408)
T 1r76_A 83 ARHVADVIVSFQTPAGGWGKNQPRDGALRLPGQHYTGENVAKVKSGSNDLDAARDRDWHYVGTIDNDATVTEIRFLAQVV 162 (408)
T ss_dssp HHHHHHHHHHHCCTTSCCCSSCCSSSCCCCTTCCSSCCCCCCCC---------CCCCCSSSSBCGGGTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHccccCCCCCCccccccccchhhhhcccccccccccccccchhhcccccCCCCCCCCchHHHHHHHHHHHH
Confidence 67899999999999999964210 1134456888888887764
Q ss_pred CC----C----cccHHHHHHHHHhccCCCCCcccC-CCCC--------cccchHHHHHHHHHHhCCC-------------
Q 021286 96 KV----D----ILDADKVSNYIVGLQNEDGSFSGD-IWGE--------VDTRFSYIAICCLSILQRL------------- 145 (314)
Q Consensus 96 ~~----~----~~~~~~~~~~l~~~Q~~dGgf~~~-~~~~--------~d~~~ty~al~~l~ll~~~------------- 145 (314)
.. + +...+++++||...|.+||||... +... +| ..|--++..|..++..
T Consensus 163 ~~~t~~~~~~y~~Ai~Rgl~wlL~mQ~~nGGWpqFdpdn~~y~~~IpFnD-Dvt~rvle~L~~~~~~~~~~~~~~~~~~~ 241 (408)
T 1r76_A 163 SQLAPEEAAPYRDAALKGIEYLLASQFPNGGWPQVWPLEGGYHDAITYND-DALVHVAELLSDIAAGRDGFGFVPPAIRT 241 (408)
T ss_dssp HHSCGGGCHHHHHHHHHHHHHHHHHSCTTSCCBSBSSCCCGGGGSEECGG-GHHHHHHHHHHHHHHTCTTCTTSCHHHHH
T ss_pred hhccccccHHHHHHHHHHHHHHHHccCCCCCCcCcCccccccccCCCcCc-HHHHHHHHHHHHHHhccCcccccchhhhh
Confidence 21 1 113578999999999999999643 2111 11 1233344445444431
Q ss_pred -CccCHHHHHHHHHhccCC-CCCCCC-----CCCCc-----------c-chhhhHHHHHHHHHhhcCCcC-----CHHHH
Q 021286 146 -DKINVDKAVEYIVSCKNL-DGGFGC-----TPGGE-----------S-HSGQIFCCVGALAIAGALHHV-----DKDLL 201 (314)
Q Consensus 146 -~~~~~~~~~~~l~~~q~~-dGGf~~-----~p~~~-----------s-~~~~T~~al~~L~ll~~~~~~-----~~~~~ 201 (314)
....++++++||++.|-+ ||.|-. ..+.- + .+..|..+|. .+++...+. .++++
T Consensus 242 ~~~~av~Rgi~~Ll~~Qe~~dGsw~rWg~qY~ygT~~Pa~aRsYE~psLs~~esa~il~--~LM~~~~~~~~~~~aI~~A 319 (408)
T 1r76_A 242 RALEATNAAIHCIVETQVVQDGKRLGWGQQHDALTLRPTSARNFEPAALSSTESARILL--FLMEIEAPSDAVKQAIRGG 319 (408)
T ss_dssp HHHHHHHHHHHHHHHHSCEETTEECCCCSEECTTTCSBCCCSTTCCSCEEHHHHHHHHH--HHTTSSSCCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhhcccCCcccchhcccccccCcchhhhccCCccccHHHHHHHHH--HHccCCCCCHHHHHHHHHH
Confidence 123568899999999999 997641 01110 1 1122333332 333333221 27899
Q ss_pred HHHHHccCcCCCccc
Q 021286 202 GWWLCERQVKSGGLN 216 (314)
Q Consensus 202 ~~~L~~~Q~~~GGf~ 216 (314)
++||.++|+++|+|.
T Consensus 320 v~WL~s~Q~~dg~w~ 334 (408)
T 1r76_A 320 VAWLNTSVIRDRAWV 334 (408)
T ss_dssp HHHHHHSCCCC----
T ss_pred HHHHHHhhcCCCcee
Confidence 999999999999986
No 33
>3cu7_A Complement C5; Mg domain, inflammation, anaphylatoxin, cleavage of basic residues, complement alternate pathway, glycoprotein, immune response; HET: NAG; 3.10A {Homo sapiens} PDB: 3kls_A* 3km9_A* 4e0s_A* 3prx_A* 3pvm_A* 4a5w_A* 1xwe_A
Probab=98.73 E-value=1e-07 Score=103.72 Aligned_cols=206 Identities=14% Similarity=0.085 Sum_probs=123.1
Q ss_pred HHhccCCCCcccCCCCCCCchhhhHHHHHHHHHhcCCCcc---cHHHHHHHHHh-ccCCCCCcccCC--------CCC--
Q 021286 61 ILKCQDESGGFAGNIGHDPHVLYTLSAVQVLALFDKVDIL---DADKVSNYIVG-LQNEDGSFSGDI--------WGE-- 126 (314)
Q Consensus 61 l~~~q~~dGGf~~~~~~~~~~~~T~~al~~L~~l~~~~~~---~~~~~~~~l~~-~Q~~dGgf~~~~--------~~~-- 126 (314)
+++.|++||+|+.+.+..++.+-|.+++.+|..+.....+ -+.++++||.+ .|.+||+|.... ++.
T Consensus 1056 ~l~~q~~dGsfs~w~~~~~s~wLTAyv~~~l~~A~~~~~v~~~~l~~a~~~L~~~~q~~~g~f~~~~~~~~~~~~gg~~~ 1135 (1676)
T 3cu7_A 1056 IMSYRNADYSYSVWKGGSASTWLTAFALRVLGQVNKYVEQNQNSICNSLLWLVENYQLDNGSFKENSQYQPIKLQGTLPV 1135 (1676)
T ss_dssp GGGGBCTTSCBCSSSSSCCCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHSBCTTSCBCCCSSCCCCCCCSCHHH
T ss_pred HhhccCCCCCccccCCCCCcEEEeHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhCCCCCcccCCccccchhhcCCccc
Confidence 4568999999999987889999999999999988754233 36789999999 999999996421 010
Q ss_pred ----cccchHHHHHHHHHHhCCC-----CccCHHHHHHHHHhccCCCCCCCCCCCCccchhhhHHHHHHHHHhhcCCcCC
Q 021286 127 ----VDTRFSYIAICCLSILQRL-----DKINVDKAVEYIVSCKNLDGGFGCTPGGESHSGQIFCCVGALAIAGALHHVD 197 (314)
Q Consensus 127 ----~d~~~ty~al~~l~ll~~~-----~~~~~~~~~~~l~~~q~~dGGf~~~p~~~s~~~~T~~al~~L~ll~~~~~~~ 197 (314)
.++..|..++.+|...+.. ....++++++||.+.... + .+.........+|++.|... ..
T Consensus 1136 ~~~~~~~~ltAyvl~aL~~~~~~~~~~~~~~~i~~a~~yL~~~~~~---~-------~~~y~~A~lA~Al~l~g~~~-~~ 1204 (1676)
T 3cu7_A 1136 EARENSLYLTAFTVIGIRKAFDICPLVKIDTALIKADNFLLENTLP---A-------QSTFTLAISAYALSLGDKTH-PQ 1204 (1676)
T ss_dssp HHHHHHHHHHHHHHHHHHHTGGGSCCHHHHHHHHHHHHHHHHHHSS---C-------SCHHHHHHHHHHHTTSCTTC-HH
T ss_pred ccccCccccHHHHHHHHHhcccccCCcccHHHHHHHHHHHHHhhhc---c-------CCHHHHHHHHHHHHhcCCch-hh
Confidence 1333334445555433321 012456889999775322 1 11111112222334444321 11
Q ss_pred HHHHHHHHHccCcCCCc------ccCCCC-----C---C--CCchhHHHHHHHHHhhccCcccChHHHHHHHHhhcCCCC
Q 021286 198 KDLLGWWLCERQVKSGG------LNGRPE-----K---L--PDVCYSWWVLSSLIMIDRVHWINKDKLVKFILDCQDMEN 261 (314)
Q Consensus 198 ~~~~~~~L~~~Q~~~GG------f~~~~~-----~---~--~d~~yt~~~~~~L~~l~~~~~~~~~~~~~~l~~~Q~~~~ 261 (314)
.+++++.|.+....+|+ |..... . . .++.-|-|++.++...+. ......+++||.+.|+ ..
T Consensus 1205 a~~~l~~L~~~a~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~ve~tayaLlall~~~~--~~~~~~iv~wL~~qr~-~~ 1281 (1676)
T 3cu7_A 1205 FRSIVSALKREALVKGNPPIYRFWKDNLQHKDSSVPNTGTARMVETTAYALLTSLNLKD--INYVNPVIKWLSEEQR-YG 1281 (1676)
T ss_dssp HHHHHHHHHHHCEEETTTTSEEECCSCSSCCSSCCCSCCCHHHHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHSC-SS
T ss_pred HHHHHHHHHhhhhhccCCccccCCCCCCCCccccccCCCccchHHHHHHHHHHHHhcCC--hhHHHHHHHHHHhccC-CC
Confidence 56677777765543332 322210 0 1 145566667666665553 2335678999999888 67
Q ss_pred CCcCCCCCCCCCHHHHHHHhhhhhcc
Q 021286 262 GGISDRPDDAVDVFHTYFGVAGLSLL 287 (314)
Q Consensus 262 GGf~~~p~~~~d~~~T~~al~~L~l~ 287 (314)
|||.. ...|.+||-||+-.
T Consensus 1282 Gg~~S-------TQdT~~Al~AL~~y 1300 (1676)
T 3cu7_A 1282 GGFYS-------TQDTINAIEGLTEY 1300 (1676)
T ss_dssp SCCST-------TTTHHHHHHHHHHH
T ss_pred CCccc-------cHHHHHHHHHHHHH
Confidence 99985 35566777766544
No 34
>3cu7_A Complement C5; Mg domain, inflammation, anaphylatoxin, cleavage of basic residues, complement alternate pathway, glycoprotein, immune response; HET: NAG; 3.10A {Homo sapiens} PDB: 3kls_A* 3km9_A* 4e0s_A* 3prx_A* 3pvm_A* 4a5w_A* 1xwe_A
Probab=98.67 E-value=2.5e-07 Score=100.77 Aligned_cols=213 Identities=14% Similarity=0.053 Sum_probs=129.0
Q ss_pred cHHHHHHHHH-------HcccCCCCccccccccchhHHHHHHHHHHHhcCCC---CccCHHHHHHHHHh-ccCCCCcccC
Q 021286 5 AADKHVKYII-------SVEKKKDSFESVVMEHLRLNGAYWGLTTLDILGKL---DAVDEEDVISWILK-CQDESGGFAG 73 (314)
Q Consensus 5 ~~~~~~~yl~-------~~~~~~g~~~~~~~~~~~~~~~~~al~~L~lLg~~---~~~~~~~~~~~l~~-~q~~dGGf~~ 73 (314)
.+++.+++++ ..|++||+|.+|...+.++|.|-|++..|..+.+. +....+++++||.+ .|.+||.|..
T Consensus 1041 ~~~~~~~~i~~g~~r~l~~q~~dGsfs~w~~~~~s~wLTAyv~~~l~~A~~~~~v~~~~l~~a~~~L~~~~q~~~g~f~~ 1120 (1676)
T 3cu7_A 1041 EKQKLKKKLKEGMLSIMSYRNADYSYSVWKGGSASTWLTAFALRVLGQVNKYVEQNQNSICNSLLWLVENYQLDNGSFKE 1120 (1676)
T ss_dssp HHHHHHHHHHHHHHHGGGGBCTTSCBCSSSSSCCCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHSBCTTSCBCC
T ss_pred HHHHHHHHHHHHHHHHhhccCCCCCccccCCCCCcEEEeHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhCCCCCcccC
Confidence 3456666654 35789999999977778999999999999988643 23346789999999 9999998853
Q ss_pred CCC--------C------CCchhhhHHHHHHHHHhcCC---C--cccHHHHHHHHHhccCCCCCcccCCCCCcccchHHH
Q 021286 74 NIG--------H------DPHVLYTLSAVQVLALFDKV---D--ILDADKVSNYIVGLQNEDGSFSGDIWGEVDTRFSYI 134 (314)
Q Consensus 74 ~~~--------~------~~~~~~T~~al~~L~~l~~~---~--~~~~~~~~~~l~~~Q~~dGgf~~~~~~~~d~~~ty~ 134 (314)
... . ++++..|.+++.+|...+.. . ...+.++++||.+.... + .++.....
T Consensus 1121 ~~~~~~~~~~gg~~~~~~~~~~~ltAyvl~aL~~~~~~~~~~~~~~~i~~a~~yL~~~~~~---~-------~~~y~~A~ 1190 (1676)
T 3cu7_A 1121 NSQYQPIKLQGTLPVEARENSLYLTAFTVIGIRKAFDICPLVKIDTALIKADNFLLENTLP---A-------QSTFTLAI 1190 (1676)
T ss_dssp CSSCCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHTGGGSCCHHHHHHHHHHHHHHHHHHSS---C-------SCHHHHHH
T ss_pred CccccchhhcCCcccccccCccccHHHHHHHHHhcccccCCcccHHHHHHHHHHHHHhhhc---c-------CCHHHHHH
Confidence 210 0 02345567777777655432 1 11356788999775322 1 12222222
Q ss_pred HHHHHHHhCCCCccCHHHHHHHHHhccCCCCC------CCCCC------C---C-ccchhhhHHHHHHHHHhhcCCcCCH
Q 021286 135 AICCLSILQRLDKINVDKAVEYIVSCKNLDGG------FGCTP------G---G-ESHSGQIFCCVGALAIAGALHHVDK 198 (314)
Q Consensus 135 al~~l~ll~~~~~~~~~~~~~~l~~~q~~dGG------f~~~p------~---~-~s~~~~T~~al~~L~ll~~~~~~~~ 198 (314)
+..+|++.|... ...+++++.|++....+|+ |...+ + . ..+...|.+++.++...+ +....
T Consensus 1191 lA~Al~l~g~~~-~~a~~~l~~L~~~a~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~ve~tayaLlall~~~--~~~~~ 1267 (1676)
T 3cu7_A 1191 SAYALSLGDKTH-PQFRSIVSALKREALVKGNPPIYRFWKDNLQHKDSSVPNTGTARMVETTAYALLTSLNLK--DINYV 1267 (1676)
T ss_dssp HHHHHTTSCTTC-HHHHHHHHHHHHHCEEETTTTSEEECCSCSSCCSSCCCSCCCHHHHHHHHHHHHHHHHTT--CHHHH
T ss_pred HHHHHHhcCCch-hhHHHHHHHHHhhhhhccCCccccCCCCCCCCccccccCCCccchHHHHHHHHHHHHhcC--ChhHH
Confidence 223344455421 1156677778776553333 32211 0 1 113456666665554443 33346
Q ss_pred HHHHHHHHccCcCCCcccCCCCCCCCchhHHHHHHHHHh
Q 021286 199 DLLGWWLCERQVKSGGLNGRPEKLPDVCYSWWVLSSLIM 237 (314)
Q Consensus 199 ~~~~~~L~~~Q~~~GGf~~~~~~~~d~~yt~~~~~~L~~ 237 (314)
.+.++||.++|+..|||... -.|.+++.||..
T Consensus 1268 ~~iv~wL~~qr~~~Gg~~ST-------QdT~~Al~AL~~ 1299 (1676)
T 3cu7_A 1268 NPVIKWLSEEQRYGGGFYST-------QDTINAIEGLTE 1299 (1676)
T ss_dssp HHHHHHHHHHSCSSSCCSTT-------TTHHHHHHHHHH
T ss_pred HHHHHHHHhccCCCCCcccc-------HHHHHHHHHHHH
Confidence 67889999998888999753 335566666654
No 35
>1gxm_A Pectate lyase; mechanism, elimination; 1.32A {Cellvibrio cellulosa} SCOP: a.102.5.1 PDB: 1gxn_A 1gxo_A*
Probab=98.63 E-value=4.5e-08 Score=87.59 Aligned_cols=115 Identities=14% Similarity=0.170 Sum_probs=79.7
Q ss_pred HHHHHHhccCCCCCcccCCC-------------CCcccchHHHHHHHHHHhCCCC-----ccCHHHHHHHHHhccCCCCC
Q 021286 105 VSNYIVGLQNEDGSFSGDIW-------------GEVDTRFSYIAICCLSILQRLD-----KINVDKAVEYIVSCKNLDGG 166 (314)
Q Consensus 105 ~~~~l~~~Q~~dGgf~~~~~-------------~~~d~~~ty~al~~l~ll~~~~-----~~~~~~~~~~l~~~q~~dGG 166 (314)
+.+-|...|.++|||..+.. ...|...|..++..|+-+...+ ...++++++||+..|.+|||
T Consensus 36 ~Ad~~l~~Q~~~GGW~kn~d~~~~~~~~~~~~~~t~DnddTa~vl~~Larv~~~~~~~~y~~Ai~Rgl~wlL~mQ~~nGG 115 (332)
T 1gxm_A 36 RADVVLSYQQNNGGWPKNLDYNSVGNGGGGNESGTIDNGATITEMVFLAEVYKSGGNTKYRDAVRKAANFLVNSQYSTGA 115 (332)
T ss_dssp GHHHHHHTCCTTSCCCSCCCTTTCCCCCCCCSCEECGGGTTHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCTTSC
T ss_pred HHHHHHHcCcCCCCCCcceecccccccCCCCCCCCccCccHHHHHHHHHHHhccccchHHHHHHHHHHHHHHhccCCCCC
Confidence 36778899999999985321 1246677887777776553211 23567999999999999999
Q ss_pred CCCC-CCCc--------cchhhhHHHHHHHHHhhcC----------------CcCCHHHHHHHHHccCcCCCcccCCCC
Q 021286 167 FGCT-PGGE--------SHSGQIFCCVGALAIAGAL----------------HHVDKDLLGWWLCERQVKSGGLNGRPE 220 (314)
Q Consensus 167 f~~~-p~~~--------s~~~~T~~al~~L~ll~~~----------------~~~~~~~~~~~L~~~Q~~~GGf~~~~~ 220 (314)
|+.. |... .| .-|..++-.|..++.. ....++++++||++.|.++|||-++.+
T Consensus 116 WpqFdpd~~~Yl~~IpFnD-DvtarvLelL~~~~~~~~~~~~~~~~~~~~~~~~~av~Rgid~Llk~Qe~dggw~g~Wg 193 (332)
T 1gxm_A 116 LPQFYPLKGGYSDHATFND-NGMAYALTVLDFAANKRAPFDTDVFSDNDRTRFKTAVTKGTDYILKAQWKQNGVLTVWC 193 (332)
T ss_dssp CBSEESCCSGGGGSEECGG-GHHHHHHHHHHHHHTTCTTSCSTTSCHHHHHHHHHHHHHHHHHHHHHSCEETTEECCCC
T ss_pred ccccCCCcccccccCCcch-HHHHHHHHHHHHHHhccCCccccccccchhhhhHHHHHHHHHHHHHhhCccCCCcCeec
Confidence 9876 4321 12 2455666666666421 012367899999999999999988764
No 36
>1gxm_A Pectate lyase; mechanism, elimination; 1.32A {Cellvibrio cellulosa} SCOP: a.102.5.1 PDB: 1gxn_A 1gxo_A*
Probab=98.55 E-value=2e-08 Score=89.93 Aligned_cols=112 Identities=21% Similarity=0.189 Sum_probs=76.8
Q ss_pred HHHHHHHhccCCCCcccCCC-------------CCCCchhhhHHHHHHHHHhcCC-----CcccHHHHHHHHHhccCCCC
Q 021286 56 DVISWILKCQDESGGFAGNI-------------GHDPHVLYTLSAVQVLALFDKV-----DILDADKVSNYIVGLQNEDG 117 (314)
Q Consensus 56 ~~~~~l~~~q~~dGGf~~~~-------------~~~~~~~~T~~al~~L~~l~~~-----~~~~~~~~~~~l~~~Q~~dG 117 (314)
.+.+.|+..|.++|||.-.- ...++...|...+.+|..+... -+...+++++||...|.+||
T Consensus 35 ~~Ad~~l~~Q~~~GGW~kn~d~~~~~~~~~~~~~~t~DnddTa~vl~~Larv~~~~~~~~y~~Ai~Rgl~wlL~mQ~~nG 114 (332)
T 1gxm_A 35 SRADVVLSYQQNNGGWPKNLDYNSVGNGGGGNESGTIDNGATITEMVFLAEVYKSGGNTKYRDAVRKAANFLVNSQYSTG 114 (332)
T ss_dssp GGHHHHHHTCCTTSCCCSCCCTTTCCCCCCCCSCEECGGGTTHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCTTS
T ss_pred HHHHHHHHcCcCCCCCCcceecccccccCCCCCCCCccCccHHHHHHHHHHHhccccchHHHHHHHHHHHHHHhccCCCC
Confidence 35889999999999997531 1235667799999998876321 12236799999999999999
Q ss_pred CcccC-CCCC--------cccchHHHHHHHHHHhCC----C------------CccCHHHHHHHHHhccCCCCCCC
Q 021286 118 SFSGD-IWGE--------VDTRFSYIAICCLSILQR----L------------DKINVDKAVEYIVSCKNLDGGFG 168 (314)
Q Consensus 118 gf~~~-~~~~--------~d~~~ty~al~~l~ll~~----~------------~~~~~~~~~~~l~~~q~~dGGf~ 168 (314)
||... +... +| ..|--++..|..++. . ....++++++||++.|-+||||-
T Consensus 115 GWpqFdpd~~~Yl~~IpFnD-DvtarvLelL~~~~~~~~~~~~~~~~~~~~~~~~~av~Rgid~Llk~Qe~dggw~ 189 (332)
T 1gxm_A 115 ALPQFYPLKGGYSDHATFND-NGMAYALTVLDFAANKRAPFDTDVFSDNDRTRFKTAVTKGTDYILKAQWKQNGVL 189 (332)
T ss_dssp CCBSEESCCSGGGGSEECGG-GHHHHHHHHHHHHHTTCTTSCSTTSCHHHHHHHHHHHHHHHHHHHHHSCEETTEE
T ss_pred CccccCCCcccccccCCcch-HHHHHHHHHHHHHHhccCCccccccccchhhhhHHHHHHHHHHHHHhhCccCCCc
Confidence 99753 2111 12 234445666666542 1 12346789999999999999763
No 37
>3prx_B Cobra venom factor; immune system, complement, immune SYS complex; HET: NAG; 4.30A {Naja kaouthia} PDB: 3pvm_B*
Probab=98.46 E-value=1.9e-08 Score=108.35 Aligned_cols=193 Identities=13% Similarity=0.117 Sum_probs=0.0
Q ss_pred HHHHHHHHH-------cccCCCCccccccccchhHHHHHHHHHHHhcCCC----CccCHHHHHHHHHh-ccCCCCcccCC
Q 021286 7 DKHVKYIIS-------VEKKKDSFESVVMEHLRLNGAYWGLTTLDILGKL----DAVDEEDVISWILK-CQDESGGFAGN 74 (314)
Q Consensus 7 ~~~~~yl~~-------~~~~~g~~~~~~~~~~~~~~~~~al~~L~lLg~~----~~~~~~~~~~~l~~-~q~~dGGf~~~ 74 (314)
+++.+||+. .|++||+|.+|...+..+|.|.|++..|....+. ++...+++++||.+ +|++||.|...
T Consensus 1026 ~ka~~~i~~Gyqr~l~yq~~DGsfs~w~~~~~stWLTAyV~k~f~~A~~~i~~Vd~~~l~~~~~wL~~~~Q~~dG~F~e~ 1105 (1642)
T 3prx_B 1026 TEAVNQIVTGYAQQMVYKKADHSYAAFTNRASSSWLTAYVVKVFAMAAKMVAGISHEIICGGVRWLILNRQQPDGAFKEN 1105 (1642)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCeecCCCCCCccccHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHhhccCCCCccccc
Confidence 456666654 5779999999987778999999999999988753 33457889999998 89999998532
Q ss_pred C------------CCCCchhhhHHHHHHHHHhcCC-------CcccHHHHHHHHHhccCCCCCcccCCCCCcccchHHHH
Q 021286 75 I------------GHDPHVLYTLSAVQVLALFDKV-------DILDADKVSNYIVGLQNEDGSFSGDIWGEVDTRFSYIA 135 (314)
Q Consensus 75 ~------------~~~~~~~~T~~al~~L~~l~~~-------~~~~~~~~~~~l~~~Q~~dGgf~~~~~~~~d~~~ty~a 135 (314)
. +.+.++..|.+.+.+|...+.. ....+++++.||.+.... - .+.+....+
T Consensus 1106 ~~v~~~~m~Gg~~~~~~~~~lTA~vliaL~e~~~~~~~~~~~~~~~i~~a~~~L~~~~~~-~---------~~~Y~~Ai~ 1175 (1642)
T 3prx_B 1106 APVLSGTMQGGIQGAEEEVYLTAFILVALLESKTICNDYVNSLDSSIKKATNYLLKKYEK-L---------QRPYTTALT 1175 (1642)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccchhccCCccCCCCcccchHHHHHHHHhcccccccccccchHHHHHHHHHHHHhhhc-C---------CCHHHHHHH
Confidence 1 1234677788888777765431 122467888999764211 0 111111111
Q ss_pred HHHHHHhCCCCccCHHHHHHHHHhccCCCCCCCCCCCC-ccchhhhHHHHHHHHHhhcCCcCCHHHHHHHHHccCcCCCc
Q 021286 136 ICCLSILQRLDKINVDKAVEYIVSCKNLDGGFGCTPGG-ESHSGQIFCCVGALAIAGALHHVDKDLLGWWLCERQVKSGG 214 (314)
Q Consensus 136 l~~l~ll~~~~~~~~~~~~~~l~~~q~~dGGf~~~p~~-~s~~~~T~~al~~L~ll~~~~~~~~~~~~~~L~~~Q~~~GG 214 (314)
.-+|++.+... +.++.-+.+. ++-+-..|+. ..+...|.+|+-++...+ +.......++||.++|+..||
T Consensus 1176 aYAl~l~~~~~----~~~l~~l~~~---~~~~W~~~~~~~~~VE~TaYaLLa~l~~~--~~~~a~~iv~WL~~qr~~~Gg 1246 (1642)
T 3prx_B 1176 AYALAAADQLN----DDRVLMAAST---GRDHWEEYNAHTHNIEGTSYALLALLKMK--KFDQTGPIVRWLTDQNFYGET 1246 (1642)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHhcCCch----HHHHHHHHhc---CCCCCCCCCCchHHHHHHHHHHHHHhccC--chhhHHHHHHHHHHhccCCCc
Confidence 12344445421 1111111111 2222222332 235677888876555443 333466789999999999999
Q ss_pred ccCC
Q 021286 215 LNGR 218 (314)
Q Consensus 215 f~~~ 218 (314)
|..-
T Consensus 1247 f~ST 1250 (1642)
T 3prx_B 1247 YGQT 1250 (1642)
T ss_dssp ----
T ss_pred ccCc
Confidence 9764
No 38
>2bb6_A TCII, TC II, transcobalamin II; alpha_6 - alpha_6 barrel, transport protein; HET: B12; 2.00A {Bos taurus} PDB: 2bbc_A* 2v3n_A* 2v3p_A* 2bb5_A*
Probab=98.41 E-value=1.4e-06 Score=80.67 Aligned_cols=131 Identities=15% Similarity=0.039 Sum_probs=88.6
Q ss_pred HHHHHHHHHhcCCCCccCHHHHHHHHHhccCCCCcccCCCCCCCchhhhHHHHHHHHHhcCC--C---cccHHHHH----
Q 021286 36 AYWGLTTLDILGKLDAVDEEDVISWILKCQDESGGFAGNIGHDPHVLYTLSAVQVLALFDKV--D---ILDADKVS---- 106 (314)
Q Consensus 36 ~~~al~~L~lLg~~~~~~~~~~~~~l~~~q~~dGGf~~~~~~~~~~~~T~~al~~L~~l~~~--~---~~~~~~~~---- 106 (314)
.-|++.+|...|... .++.++.|...|. +++|. .+...++..|..|+++|..++.. . ...+++++
T Consensus 139 ~sL~vLALC~~g~~v---~~~~v~~Ll~~~~-~~~~~--~g~~~sVDT~AMA~lAL~C~~~~~~~~~~~~~i~~al~~l~ 212 (414)
T 2bb6_A 139 YSLGILALCVHQKRV---HDSVVGKLLYAVE-HKPHL--LQDHVSVDTMAMAGMAFSCLELSNLNPKQRNRINLALKRVQ 212 (414)
T ss_dssp HHHHHHHHHHTTCCC---CHHHHHHHHHHHH-SSSCS--CCTTTHHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCc---cHHHHHHHHHHhh-ccCcC--CCCcccccHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHH
Confidence 334555555566543 3457777776665 34553 22345799999999999998641 1 11234444
Q ss_pred HHHHhccCCCCCcccCCCCCcccchHHHHHHHHHHhCCCCc---cCHHHHHHHHHhccCCCCCCCCCCCCccchhhhHHH
Q 021286 107 NYIVGLQNEDGSFSGDIWGEVDTRFSYIAICCLSILQRLDK---INVDKAVEYIVSCKNLDGGFGCTPGGESHSGQIFCC 183 (314)
Q Consensus 107 ~~l~~~Q~~dGgf~~~~~~~~d~~~ty~al~~l~ll~~~~~---~~~~~~~~~l~~~q~~dGGf~~~p~~~s~~~~T~~a 183 (314)
++|.+.|++||+|+ +.++|-.|+.+|...+.... .+..+++++|++ |.+||+|. +...|..+
T Consensus 213 ~~l~~~Q~~dG~FG-------N~~ST~lA~QAL~~~~~~~~~~~w~~~~a~~~Ll~-q~~dG~F~-------np~ataQ~ 277 (414)
T 2bb6_A 213 EKILKAQTPEGYFG-------NVYSTPLALQLLMGSLRPSVELGTACLKAKAALQA-SLQHKTFQ-------NPLMISQL 277 (414)
T ss_dssp HHHHHTBCTTSCBS-------STTTHHHHHHHHTTCSSCCHHHHHHHHHHHHHHHH-HHTTTCCC-------SHHHHHHH
T ss_pred HHHHHhhcCCCCcc-------chhhHHHHHHHHHhcCCCcccccchHHHHHHHHHH-hccCCCCC-------ChHHHHHH
Confidence 77888899999996 46778888888877776332 266789999999 99999997 33567666
Q ss_pred HHHH
Q 021286 184 VGAL 187 (314)
Q Consensus 184 l~~L 187 (314)
+-+|
T Consensus 278 lpaL 281 (414)
T 2bb6_A 278 LPVL 281 (414)
T ss_dssp HHHT
T ss_pred HHHh
Confidence 6444
No 39
>3sdr_A Alpha-bisabolene synthase; lyase, terpene synthase; HET: 210; 1.86A {Abies grandis} PDB: 3sdq_A 3sae_A* 3sdt_A* 3sdu_A* 3sdv_A*
Probab=98.39 E-value=5.5e-06 Score=83.35 Aligned_cols=259 Identities=19% Similarity=0.225 Sum_probs=147.2
Q ss_pred HHHHHHHHHccc---CCCCccccccccchhHHHHHHHHHHHhcCCCCccCHHHHHHHHHhccCCCCcccCCCCC--CCch
Q 021286 7 DKHVKYIISVEK---KKDSFESVVMEHLRLNGAYWGLTTLDILGKLDAVDEEDVISWILKCQDESGGFAGNIGH--DPHV 81 (314)
Q Consensus 7 ~~~~~yl~~~~~---~~g~~~~~~~~~~~~~~~~~al~~L~lLg~~~~~~~~~~~~~l~~~q~~dGGf~~~~~~--~~~~ 81 (314)
++.++-+++..+ .||.+. .-..-+..|.| |+...-++..........++||++.|.+||+||..... .-.+
T Consensus 57 ~~Lie~VK~~l~~~~~~g~~g---~~S~S~YDTAW-VAmvp~~~~~~~p~Fp~~~~wil~nQ~~DGsWg~~~~~~~~d~l 132 (817)
T 3sdr_A 57 EVLVSEIKAMLNPAITGDGES---MITPSAYDTAW-VARVPAIDGSARPQFPQTVDWILKNQLKDGSWGIQSHFLLSDRL 132 (817)
T ss_dssp HHHHHHHHHHHHHHHTSSCCC---CCCCCHHHHHH-HHTCBCTTSCSSBSSHHHHHHHHHCCCTTSCCSCTTCCCHHHHH
T ss_pred HHHHHHHHHHhccccCCCCCc---ccccCHHHhhH-HheeecCCCCCCCCchHHHHHHHHccCCCCCCCCCCCcchHHHH
Confidence 445566666654 455221 12345667888 32222222222345678999999999999999864321 1247
Q ss_pred hhhHHHHHHHHHhcCCCcccHHHHHHHHHhccCC-CCCcccCCCCCcccchHHHHHHHHH-HhCC---------------
Q 021286 82 LYTLSAVQVLALFDKVDILDADKVSNYIVGLQNE-DGSFSGDIWGEVDTRFSYIAICCLS-ILQR--------------- 144 (314)
Q Consensus 82 ~~T~~al~~L~~l~~~~~~~~~~~~~~l~~~Q~~-dGgf~~~~~~~~d~~~ty~al~~l~-ll~~--------------- 144 (314)
.+|.+|+.+|..-+. ....+++++.||.+.-.. +.-....+ ....+.-++-++.-++ -+|.
T Consensus 133 l~TlAcvlAL~~w~~-~~~~i~~Gl~fl~~nl~~~~~~~~~~~-~~vgfeiifP~ll~~a~~~gl~~p~~~~~~~~l~~~ 210 (817)
T 3sdr_A 133 LATLSCVLVLLKWNV-GDLQVEQGIEFIKSNLELVKDETDQDS-LVTDFEIIFPSLLREAQSLRLGLPYDLPYIHLLQTK 210 (817)
T ss_dssp HHHHHHHHHHHHTTC-CHHHHHHHHHHHHHHHTTCCSGGGSCS-CCTTHHHHHHHHHHHHHHTTCSCCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHccC-CHHHHHHHHHHHHHHHHHhhcccccCC-CCcceeeeHHHHHHHHHHcCCCCCCCchHHHHHHHH
Confidence 889999999987543 223578899999875322 11000000 0001111111111100 0110
Q ss_pred -------CC---------c-----cCHHHHHHH--HHhccCCCCCCCCCCCCccchhhhHHHHHHHHHhhcCCcCCHHHH
Q 021286 145 -------LD---------K-----INVDKAVEY--IVSCKNLDGGFGCTPGGESHSGQIFCCVGALAIAGALHHVDKDLL 201 (314)
Q Consensus 145 -------~~---------~-----~~~~~~~~~--l~~~q~~dGGf~~~p~~~s~~~~T~~al~~L~ll~~~~~~~~~~~ 201 (314)
.. . +.....++| +...|..||+|..+|. .|.+++. -.+ | +++
T Consensus 211 r~~kL~~~~~~~~~~~p~~llhslE~l~~~~d~~~~~~~q~~~GS~~~SPs------aTAa~l~---~~~-----d-~~~ 275 (817)
T 3sdr_A 211 RQERLAKLSREEIYAVPSPLLYSLEGIQDIVEWERIMEVQSQDGSFLSSPA------STACVFM---HTG-----D-AKC 275 (817)
T ss_dssp HHHHHHTCCSGGGGTSCCGGGGGGGGCTTTCCTTTGGGGCCTTSCBTTBHH------HHHHHHH---HHC-----C-HHH
T ss_pred HHHHHhCCChhhccCCCchHHHHHHhccccccHHHHHhccCCCCCcccCHH------HHHHHHH---hCC-----C-hhH
Confidence 00 0 001122455 6778888999987764 5655432 122 2 578
Q ss_pred HHHHHccCcCCCcccCCCCCC-CCchhHHHHHHHHHhhccCccc--ChHHHHHHHHhhcCCCCCCcCC-CCCCCCCHHHH
Q 021286 202 GWWLCERQVKSGGLNGRPEKL-PDVCYSWWVLSSLIMIDRVHWI--NKDKLVKFILDCQDMENGGISD-RPDDAVDVFHT 277 (314)
Q Consensus 202 ~~~L~~~Q~~~GGf~~~~~~~-~d~~yt~~~~~~L~~l~~~~~~--~~~~~~~~l~~~Q~~~~GGf~~-~p~~~~d~~~T 277 (314)
.+||.+-...-|| +.|+-. .|....-|.+.+|.-||-..-+ ..+.+.++|-++-. ..| ... .++..+|++.|
T Consensus 276 ~~YL~~~~~~~~g--~VP~~yP~d~~e~l~lID~LqrLGi~~hF~~EI~~~L~~i~~~~~-~~g-i~~~~~~~~~Dl~~t 351 (817)
T 3sdr_A 276 LEFLNSVMIKFGN--FVPCLYPVDLLERLLIVDNIVRLGIYRHFEKEIKEALDYVYRHWN-ERG-IGWGRLNPIADLETT 351 (817)
T ss_dssp HHHHHHHHHHHSS--CCCSSSCCHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHHHCC-TTC-CCSSTTCSSCCHHHH
T ss_pred HHHHHHHHHhcCC--CCCccCCCcHHHHHHHHHHHHHcCCccccHHHHHHHHHHHHHHhh-hcc-cccccCCCCCCHHHH
Confidence 8888776544233 356554 4577778999999999853211 24567777776654 333 332 34456899999
Q ss_pred HHHhhhhhccCCC
Q 021286 278 YFGVAGLSLLEYP 290 (314)
Q Consensus 278 ~~al~~L~l~~~~ 290 (314)
+++...|...|+.
T Consensus 352 Al~FRlLR~~Gy~ 364 (817)
T 3sdr_A 352 ALGFRLLRLHRYN 364 (817)
T ss_dssp HHHHHHHHHTTCC
T ss_pred HHHHHHHHHcCCC
Confidence 9999999999973
No 40
>3p5p_A Taxadiene synthase; class I and II terpene cyclase fold, diterpene cyclase, DDXX NSE/DTE motif, 3-azacopalyl diphosphate; HET: A3C; 1.82A {Taxus brevifolia} PDB: 3p5r_A*
Probab=98.37 E-value=4.9e-06 Score=83.16 Aligned_cols=254 Identities=15% Similarity=0.195 Sum_probs=146.5
Q ss_pred HHHHHHHHHHcccC--CCCccccccccchhHHHHHHHHHHHhc--CCCCccCHHHHHHHHHhccCCCCcccCCCCCC--C
Q 021286 6 ADKHVKYIISVEKK--KDSFESVVMEHLRLNGAYWGLTTLDIL--GKLDAVDEEDVISWILKCQDESGGFAGNIGHD--P 79 (314)
Q Consensus 6 ~~~~~~yl~~~~~~--~g~~~~~~~~~~~~~~~~~al~~L~lL--g~~~~~~~~~~~~~l~~~q~~dGGf~~~~~~~--~ 79 (314)
.+..++-|++..+. +|. -...+..|.| |+...-+ +....+.....++||++.|.+||+||...... -
T Consensus 10 ~~~~~~~i~~~~~~~~~g~------~S~S~YDTAW-Vamvp~~~~~~~~~p~Fp~~~~wil~nQ~~DGsWg~~~~~~~~d 82 (764)
T 3p5p_A 10 ADELVVKIKDMFNALGDGD------ISPSAYDTAW-VARLATISSDGSEKPRFPQALNWVFNNQLQDGSWGIESHFSLCD 82 (764)
T ss_dssp HHHHHHHHHHHHHTCSSCC------CCCCHHHHHH-HHHCEEECTTSCEEESCHHHHHHHHHCCCTTSCCSCTTSCCHHH
T ss_pred HHHHHHHHHHHHhcCCCCc------ccCcHHHHHH-HHhCccccCCCCCCCCChHHHHHHHHccCCCCCCCCCCCcchHH
Confidence 34556667666543 332 2345566888 3333223 32222356789999999999999998643211 2
Q ss_pred chhhhHHHHHHHHHhcCCCcccHHHHHHHHHhccCC-CCCcccCCCCCcccchHHHHHHHH-HHhCC-------------
Q 021286 80 HVLYTLSAVQVLALFDKVDILDADKVSNYIVGLQNE-DGSFSGDIWGEVDTRFSYIAICCL-SILQR------------- 144 (314)
Q Consensus 80 ~~~~T~~al~~L~~l~~~~~~~~~~~~~~l~~~Q~~-dGgf~~~~~~~~d~~~ty~al~~l-~ll~~------------- 144 (314)
.+.+|.+||.+|..-+. ....+++++.||.+.-.. |.. ...| ..+.-++-++.-+ .-+|.
T Consensus 83 ~ll~TlAcvlAL~~w~~-~~~~i~~Gl~fl~~nl~~~~~~-~~~~---vgfeiifP~ll~~a~~~gl~~p~~~~~~~~l~ 157 (764)
T 3p5p_A 83 RLLNTTNSVIALSVWKT-GHSQVQQGAEFIAENLRLLNEE-DELS---PDFQIIFPALLQKAKALGINLPYDLPFIKYLS 157 (764)
T ss_dssp HHHHHHHHHHHHHHTTC-CHHHHHHHHHHHHHHHTTCCTT-SCCC---TTHHHHHHHHHHHHHHTTCCCCTTSHHHHHHH
T ss_pred HHHHHHHHHHHHHHccC-CHHHHHHHHHHHHHHHHhhcCC-CCCC---ceeeeeHHHHHHHHHHcCCCCCCCchhHHHHH
Confidence 47889999999987542 223578899999865321 110 0000 0111111111110 00110
Q ss_pred -----------------CC-----ccCHHHHHHH--HHhccCCCCCCCCCCCCccchhhhHHHHHHHHHhhcCCcCCHHH
Q 021286 145 -----------------LD-----KINVDKAVEY--IVSCKNLDGGFGCTPGGESHSGQIFCCVGALAIAGALHHVDKDL 200 (314)
Q Consensus 145 -----------------~~-----~~~~~~~~~~--l~~~q~~dGGf~~~p~~~s~~~~T~~al~~L~ll~~~~~~~~~~ 200 (314)
++ .+.....++| +...|..||+|..+|. .|.+++.. .+ -++
T Consensus 158 ~~r~~kL~~~~~~~~~~p~~llhslE~~~~~~d~~~~~~~~~~~GS~~~SPs------aTAa~l~~---~~------d~~ 222 (764)
T 3p5p_A 158 TTREARLTDVSAAADNIPANMLNALEGLEEVIDWNKIMRFQSKDGSFLSSPA------STACVLMN---TG------DEK 222 (764)
T ss_dssp HHHHHHHHHHHTSTTSSCGGGGGGGGGSGGGCCTTGGGGGBCTTSCBTTBHH------HHHHHHHH---HC------CHH
T ss_pred HhHHHHHhcCchhhcCCCchHHHHHHhccccccHHHHHhccCCCCCcccChH------HHHHHHHh---CC------Chh
Confidence 00 0011122455 6777888999987764 56555432 22 247
Q ss_pred HHHHHHccCcCCCcccCCCCCC-CCchhHHHHHHHHHhhccCccc--ChHHHHHHHHhhcCCCCCCcCC-CCCCCCCHHH
Q 021286 201 LGWWLCERQVKSGGLNGRPEKL-PDVCYSWWVLSSLIMIDRVHWI--NKDKLVKFILDCQDMENGGISD-RPDDAVDVFH 276 (314)
Q Consensus 201 ~~~~L~~~Q~~~GGf~~~~~~~-~d~~yt~~~~~~L~~l~~~~~~--~~~~~~~~l~~~Q~~~~GGf~~-~p~~~~d~~~ 276 (314)
+.+||.+-...-|| +.|+-. .|....-|.+.+|.-||-..-+ ..+.+.++|-++.. ..| ... .++..+|++.
T Consensus 223 ~~~YL~~~~~~~~g--~VP~~yP~d~~e~l~lID~LqrLGi~~hF~~EI~~~L~~i~~~~~-~~g-i~~~~~~~~~Dl~~ 298 (764)
T 3p5p_A 223 CFTFLNNLLDKFGG--CVPCMYSIDLLERLSLVDNIEHLGIGRHFKQEIKGALDYVYRHWS-ERG-IGWGRDSLVPDLNT 298 (764)
T ss_dssp HHHHHHHHHHHHTS--CCCSSCCCHHHHHHHHHHHHHHHTCGGGGHHHHHHHHHHHHHTCC-TTC-CCSSTTCSSCCHHH
T ss_pred HHHHHHHHHHhcCC--CCCCcCCCcHHHHHHHHHHHHHcCCccccHHHHHHHHHHHHHHhh-hcc-cccccCCCCCCHHH
Confidence 88888776544233 356554 4577778999999999853221 24567777776654 333 332 2444689999
Q ss_pred HHHHhhhhhccCCC
Q 021286 277 TYFGVAGLSLLEYP 290 (314)
Q Consensus 277 T~~al~~L~l~~~~ 290 (314)
|+++...|...|+.
T Consensus 299 tAl~FRlLR~~Gy~ 312 (764)
T 3p5p_A 299 TALGLRTLRMHGYN 312 (764)
T ss_dssp HHHHHHHHHHTTCC
T ss_pred HHHHHHHHHhcCCC
Confidence 99999999999973
No 41
>3prx_B Cobra venom factor; immune system, complement, immune SYS complex; HET: NAG; 4.30A {Naja kaouthia} PDB: 3pvm_B*
Probab=98.34 E-value=6e-08 Score=104.51 Aligned_cols=203 Identities=15% Similarity=0.130 Sum_probs=0.0
Q ss_pred HHHHHHhccCCCCcccCCCCCCCchhhhHHHHHHHHHhcCC----CcccHHHHHHHHHh-ccCCCCCcccCC--------
Q 021286 57 VISWILKCQDESGGFAGNIGHDPHVLYTLSAVQVLALFDKV----DILDADKVSNYIVG-LQNEDGSFSGDI-------- 123 (314)
Q Consensus 57 ~~~~l~~~q~~dGGf~~~~~~~~~~~~T~~al~~L~~l~~~----~~~~~~~~~~~l~~-~Q~~dGgf~~~~-------- 123 (314)
..+-+++.|++||+|+.+.+.+++.+-|.+++.+|.....+ +...+.++++||.+ +|++||+|....
T Consensus 1035 Gyqr~l~yq~~DGsfs~w~~~~~stWLTAyV~k~f~~A~~~i~~Vd~~~l~~~~~wL~~~~Q~~dG~F~e~~~v~~~~m~ 1114 (1642)
T 3prx_B 1035 GYAQQMVYKKADHSYAAFTNRASSSWLTAYVVKVFAMAAKMVAGISHEIICGGVRWLILNRQQPDGAFKENAPVLSGTMQ 1114 (1642)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHhcCCCCCeecCCCCCCccccHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHhhccCCCCcccccccccchhcc
Confidence 44445567899999999877778999999999999888653 22236789999997 899999996421
Q ss_pred CC----CcccchHHHHHHHHHHhCCC-------CccCHHHHHHHHHhccCCCCCCCCCCCCccchhhhHHHHH--HHHHh
Q 021286 124 WG----EVDTRFSYIAICCLSILQRL-------DKINVDKAVEYIVSCKNLDGGFGCTPGGESHSGQIFCCVG--ALAIA 190 (314)
Q Consensus 124 ~~----~~d~~~ty~al~~l~ll~~~-------~~~~~~~~~~~l~~~q~~dGGf~~~p~~~s~~~~T~~al~--~L~ll 190 (314)
++ +.++.-|..++.+|.-.+.. ....+++++.||.+.... . ..| || -||. ||++.
T Consensus 1115 Gg~~~~~~~~~lTA~vliaL~e~~~~~~~~~~~~~~~i~~a~~~L~~~~~~---~-~~~-------Y~-~Ai~aYAl~l~ 1182 (1642)
T 3prx_B 1115 GGIQGAEEEVYLTAFILVALLESKTICNDYVNSLDSSIKKATNYLLKKYEK---L-QRP-------YT-TALTAYALAAA 1182 (1642)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCccCCCCcccchHHHHHHHHhcccccccccccchHHHHHHHHHHHHhhhc---C-CCH-------HH-HHHHHHHHHhc
Confidence 11 23444343344433322221 123567899999765311 0 011 11 2222 23444
Q ss_pred hcCCcCCHHHHHHHHHccCcCCCcccCCCC-CCCCchhHHHHHHHHHhhccCcccChHHHHHHHHhhcCCCCCCcCCCCC
Q 021286 191 GALHHVDKDLLGWWLCERQVKSGGLNGRPE-KLPDVCYSWWVLSSLIMIDRVHWINKDKLVKFILDCQDMENGGISDRPD 269 (314)
Q Consensus 191 ~~~~~~~~~~~~~~L~~~Q~~~GGf~~~~~-~~~d~~yt~~~~~~L~~l~~~~~~~~~~~~~~l~~~Q~~~~GGf~~~p~ 269 (314)
+..+ +..+.-|.+. +.-+=.+++ ...++.-|-|++-++..++.. .....+++||.+-|+ ..|||..
T Consensus 1183 ~~~~----~~~l~~l~~~---~~~~W~~~~~~~~~VE~TaYaLLa~l~~~~~--~~a~~iv~WL~~qr~-~~Ggf~S--- 1249 (1642)
T 3prx_B 1183 DQLN----DDRVLMAAST---GRDHWEEYNAHTHNIEGTSYALLALLKMKKF--DQTGPIVRWLTDQNF-YGETYGQ--- 1249 (1642)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCch----HHHHHHHHhc---CCCCCCCCCCchHHHHHHHHHHHHHhccCch--hhHHHHHHHHHHhcc-CCCcccC---
Confidence 4331 1111111111 111111222 235678887777776655533 345679999999998 7999985
Q ss_pred CCCCHHHHHHHhhhhhccC
Q 021286 270 DAVDVFHTYFGVAGLSLLE 288 (314)
Q Consensus 270 ~~~d~~~T~~al~~L~l~~ 288 (314)
...|..||-||+-..
T Consensus 1250 ----TQdTvvaLqALa~Y~ 1264 (1642)
T 3prx_B 1250 ----TQATVMAFQALAEYE 1264 (1642)
T ss_dssp -------------------
T ss_pred ----cHHHHHHHHHHHHHH
Confidence 346777777776553
No 42
>3s9v_A Abietadiene synthase, chloroplastic; alpha bundle/barrel, lyase, isomerase; 2.30A {Abies grandis}
Probab=98.27 E-value=4.4e-05 Score=76.50 Aligned_cols=254 Identities=16% Similarity=0.196 Sum_probs=142.8
Q ss_pred HHHHHHHHHccc--CCCCccccccccchhHHHHHHHHHHHhcCCCCccCHHHHHHHHHhccCCCCcccCCCCCC--Cchh
Q 021286 7 DKHVKYIISVEK--KKDSFESVVMEHLRLNGAYWGLTTLDILGKLDAVDEEDVISWILKCQDESGGFAGNIGHD--PHVL 82 (314)
Q Consensus 7 ~~~~~yl~~~~~--~~g~~~~~~~~~~~~~~~~~al~~L~lLg~~~~~~~~~~~~~l~~~q~~dGGf~~~~~~~--~~~~ 82 (314)
+..++-|++... .+|. -...+..|.|. +..--++....+.....++||++.|.+||+||...... -.+.
T Consensus 34 ~~~~~~i~~~~~~~~~g~------~S~S~YDTAWV-amvp~~~~~~~p~Fp~~~~wil~nQ~~DGsWg~~~~~~~~d~l~ 106 (785)
T 3s9v_A 34 ETLISEIKNMFRCMGYGE------TNPSAYDTAWV-ARIPAVDGSDNPHFPETVEWILQNQLKDGSWGEGFYFLAYDRIL 106 (785)
T ss_dssp HHHHHHHHHHHHHCSSCC------CCCCHHHHHHH-TTSBCTTSCSSBSSHHHHHHHHHCCCTTSCCSCSSSCCHHHHHH
T ss_pred HHHHHHHHHHhhcCCCCc------ccCcHHHhhHH-hccccCCCCCCCCchHHHHHHHHccCCCCCCCCCCCCchHHHHH
Confidence 345556666543 2332 23355668882 22222222223456789999999999999998643211 2388
Q ss_pred hhHHHHHHHHHhcCCCcccHHHHHHHHHhccCCCCCcccC-CCCCc-ccchHHHHHHHH-HHhCC--C-C----------
Q 021286 83 YTLSAVQVLALFDKVDILDADKVSNYIVGLQNEDGSFSGD-IWGEV-DTRFSYIAICCL-SILQR--L-D---------- 146 (314)
Q Consensus 83 ~T~~al~~L~~l~~~~~~~~~~~~~~l~~~Q~~dGgf~~~-~~~~~-d~~~ty~al~~l-~ll~~--~-~---------- 146 (314)
+|.+|+.+|..-+. ....+++++.||.+.-.. +... +.... .+.-++-++.-+ .-+|. + +
T Consensus 107 ~TlAcvlAL~~w~~-~~~~i~~Gl~fl~~nl~~---~~~~~~~~~i~gfeiifP~ll~~a~~~gl~~~~~~~~~~~l~~~ 182 (785)
T 3s9v_A 107 ATLACIITLTLWRT-GETQVQKGIEFFRTQAGK---MEDEADSHRPSGFEIVFPAMLKEAKILGLDLPYDLPFLKQIIEK 182 (785)
T ss_dssp HHHHHHHHHHHTTC-CHHHHHHHHHHHHHHHTT---GGGSTTSCCCTTHHHHHHHHHHHHHHTTCCCCTTSHHHHHHHHH
T ss_pred HHHHHHHHHHHccc-CHHHHHHHHHHHHHHHHH---hhccCcCCCccceeeeHHHHHHHHHHcCCCCCCCchhhHHHHHH
Confidence 99999999987543 223578899999865322 1000 00000 111122111111 11110 0 0
Q ss_pred ------ccCH-----------------HHHHHH--HHhccCCCCCCCCCCCCccchhhhHHHHHHHHHhhcCCcCCHHHH
Q 021286 147 ------KINV-----------------DKAVEY--IVSCKNLDGGFGCTPGGESHSGQIFCCVGALAIAGALHHVDKDLL 201 (314)
Q Consensus 147 ------~~~~-----------------~~~~~~--l~~~q~~dGGf~~~p~~~s~~~~T~~al~~L~ll~~~~~~~~~~~ 201 (314)
.+.. ...++| |+..|..||+|..+|. .|.+++.. . . | +++
T Consensus 183 r~~kL~~~~~~~~~~~p~~llhslE~l~~~~d~~~v~~~q~~~GS~~~SPs------aTAa~l~~---~--~---d-~~~ 247 (785)
T 3s9v_A 183 REAKLKRIPTDVLYALPTTLLYSLEGLQEIVDWQKIMKLQSKDGSFLSSPA------STAAVFMR---T--G---N-KKC 247 (785)
T ss_dssp HHHHHTTSCHHHHHHSCCGGGGGGGGCTTTCCHHHHHTTCCTTSCBTTBHH------HHHHHHHH---H--C---C-HHH
T ss_pred HHHHHhCCChhhccCCcchHHHHHHhccccccHHHHHhccCCCCCcccCHH------HHHHHHHh---C--C---C-hhH
Confidence 0000 001222 4577888999987764 56555321 1 1 2 578
Q ss_pred HHHHHccCcCCCcccCCCCCC-CCchhHHHHHHHHHhhccCccc--ChHHHHHHHHhhcCCCCCCcCCCC-CCCCCHHHH
Q 021286 202 GWWLCERQVKSGGLNGRPEKL-PDVCYSWWVLSSLIMIDRVHWI--NKDKLVKFILDCQDMENGGISDRP-DDAVDVFHT 277 (314)
Q Consensus 202 ~~~L~~~Q~~~GGf~~~~~~~-~d~~yt~~~~~~L~~l~~~~~~--~~~~~~~~l~~~Q~~~~GGf~~~p-~~~~d~~~T 277 (314)
.+||.+-...-|| +.|+-. .|....-|.+.+|.-||-..-+ ..+.+.++|-++.. . .|....+ +..+|++.|
T Consensus 248 ~~YL~~~~~~~~g--~VP~~yP~d~~e~l~lID~LqrLGi~~hF~~EI~~~L~~i~~~~~-~-~gi~~~~~~~~~Dl~~t 323 (785)
T 3s9v_A 248 LDFLNFVLKKFGN--HVPCHYPLDLFERLWAVDTVERLGIDRHFKEEIKEALDYVYSHWD-E-RGIGWARENPVPDIDDT 323 (785)
T ss_dssp HHHHHHHHHHHSS--CCCSSCCCHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTCC-T-TCCCSSTTCSSCCHHHH
T ss_pred HHHHHHHHHhcCC--CCCCcCCCcHHHHHHHHHHHHHcCCccccHHHHHHHHHHHHHHhh-h-ccccccccCCCCCHHHH
Confidence 8888876544232 456554 4577778999999999853222 24567777766554 2 3333333 234799999
Q ss_pred HHHhhhhhccCCC
Q 021286 278 YFGVAGLSLLEYP 290 (314)
Q Consensus 278 ~~al~~L~l~~~~ 290 (314)
+++...|...|+.
T Consensus 324 Al~FRlLR~~Gy~ 336 (785)
T 3s9v_A 324 AMGLRILRLHGYN 336 (785)
T ss_dssp HHHHHHHHHTTCC
T ss_pred HHHHHHHHhcCCC
Confidence 9999999999973
No 43
>3pya_A ENT-copalyl diphosphate synthase, chloroplastic; class I and II terpene cyclase fold, class II diterpene CYCL DXXDD motif; HET: AG8 1PE; 2.25A {Arabidopsis thaliana} PDB: 3pyb_A*
Probab=98.03 E-value=0.00022 Score=70.64 Aligned_cols=248 Identities=13% Similarity=0.190 Sum_probs=141.7
Q ss_pred HHHHHHHHHHccc--CCCCccccccccchhHHHHHHHHHHHhcCCCC-ccCHHHHHHHHHhccCCCCcccCCCCCC--Cc
Q 021286 6 ADKHVKYIISVEK--KKDSFESVVMEHLRLNGAYWGLTTLDILGKLD-AVDEEDVISWILKCQDESGGFAGNIGHD--PH 80 (314)
Q Consensus 6 ~~~~~~yl~~~~~--~~g~~~~~~~~~~~~~~~~~al~~L~lLg~~~-~~~~~~~~~~l~~~q~~dGGf~~~~~~~--~~ 80 (314)
++..++-+++... .+|.. ..-+..|.|. +++...+ .+.....++||+..|.+||+||...... -.
T Consensus 11 ~~~~~~~ir~~l~~~~~g~~------S~S~YDTAWV----Amvp~~~~~p~Fp~~~~wil~nQ~~DGsWG~~~~~~~~D~ 80 (727)
T 3pya_A 11 FKEAVKSVKTILRNLTDGEI------TISAYDTAWV----ALIDAGDKTPAFPSAVKWIAENQLSDGSWGDAYLFSYHDR 80 (727)
T ss_dssp HHHHHHHHHHHHHTCCSCCC------CCCHHHHHHH----HTCBCSSSSBSCHHHHHHHHHTCCTTSCCSCSSSCCHHHH
T ss_pred HHHHHHHHHHHHHhccCCcc------cCcHHHhHHH----hhccCCCCCCCCHHHHHHHHhcCCCCCCCCCCCCcchhhH
Confidence 4455666666554 24432 3355668883 4443221 2346789999999999999998643211 24
Q ss_pred hhhhHHHHHHHHHhcCCCcccHHHHHHHHHhccCC-CCCc-ccCCCCCcccchHHHHHHHHHH-hCC-------------
Q 021286 81 VLYTLSAVQVLALFDKVDILDADKVSNYIVGLQNE-DGSF-SGDIWGEVDTRFSYIAICCLSI-LQR------------- 144 (314)
Q Consensus 81 ~~~T~~al~~L~~l~~~~~~~~~~~~~~l~~~Q~~-dGgf-~~~~~~~~d~~~ty~al~~l~l-l~~------------- 144 (314)
+.+|.+||.+|..=+- ....+++++.||.+.-.. +.-= ...| ..+.-++-++.-++- +|.
T Consensus 81 ll~TLAcvlAL~~w~~-~~~~i~rGl~fl~~nl~~~~~~~~~~~p---vGfeiifP~Ll~~a~~~gl~~p~~~~~l~~i~ 156 (727)
T 3pya_A 81 LINTLACVVALRSWNL-FPHQCNKGITFFRENIGKLEDENDEHMP---IGFEVAFPSLLEIARGINIDVPYDSPVLKDIY 156 (727)
T ss_dssp HHHHHHHHHHHHHTTC-CHHHHHHHHHHHHHHGGGTTCCSSCCCC---TTHHHHHHHHHHHHHHTTCCSCTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHccC-CHHHHHHHHHHHHHHHHHhhccCCCCCC---ceeeeeHHHHHHHHHHcCcCCCCCchHHHHHH
Confidence 7899999999986432 223578899999864321 1000 0000 011112212111111 110
Q ss_pred ------------------CC----------ccCHHHHHHHHHhccCCCCCCCCCCCCccchhhhHHHHHHHHHhhcCCcC
Q 021286 145 ------------------LD----------KINVDKAVEYIVSCKNLDGGFGCTPGGESHSGQIFCCVGALAIAGALHHV 196 (314)
Q Consensus 145 ------------------~~----------~~~~~~~~~~l~~~q~~dGGf~~~p~~~s~~~~T~~al~~L~ll~~~~~~ 196 (314)
++ ..+.++ +...|..||+|..+|. .|.+++.. ..
T Consensus 157 ~~r~~kL~r~~~~~~~~~p~~llhslEgl~~~dw~~----~~~~q~~~GS~~~SPs------aTAa~l~~-----~~--- 218 (727)
T 3pya_A 157 AKKELKLTRIPKEIMHKIPTTLLHSLEGMRDLDWEK----LLKLQSQDGSFLFSPS------STAFAFMQ-----TR--- 218 (727)
T ss_dssp HHHHHHHHHSCHHHHTTSCCGGGGGGGGCCCCCHHH----HGGGCCTTSSBTTBHH------HHHHHHHH-----HC---
T ss_pred HhHHHHHhCCChhhccCCCchHHHHHhcccccCHHH----HhcccCCCCCcccCHH------HHHHHHhc-----CC---
Confidence 00 011122 3456778999887763 56554321 11
Q ss_pred CHHHHHHHHHccCcCCCcccCCCCCC-CCchhHHHHHHHHHhhccCccc--ChHHHHHHHHhhcCCCCCCcCCCC-CCCC
Q 021286 197 DKDLLGWWLCERQVKSGGLNGRPEKL-PDVCYSWWVLSSLIMIDRVHWI--NKDKLVKFILDCQDMENGGISDRP-DDAV 272 (314)
Q Consensus 197 ~~~~~~~~L~~~Q~~~GGf~~~~~~~-~d~~yt~~~~~~L~~l~~~~~~--~~~~~~~~l~~~Q~~~~GGf~~~p-~~~~ 272 (314)
-+++.+||.+.....+| +.|+-. .|....-|.+.+|.-||-..-+ ..+.+.++|-++.. ..| ....+ ...+
T Consensus 219 -d~~~l~YL~~~v~k~~g--~VP~~yP~d~~e~L~lID~LqRLGIs~hFe~EI~~~L~~i~~~~~-~~g-~~~~~~~~~~ 293 (727)
T 3pya_A 219 -DSNCLEYLRNAVKRFNG--GVPNVFPVDLFEHIWIVDRLQRLGISRYFEEEIKECLDYVHRYWT-DNG-ICWARCSHVQ 293 (727)
T ss_dssp -CHHHHHHHHHHHHHTTT--CCCSSCCCHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHHTCC-TTC-CCSSSSCSCC
T ss_pred -CHHHHHHHHHHHHHcCC--CCCCCCCCcHHHHHHHHHHHHHcCCccccHHHHHHHHHHHHHHhh-hcC-cccccCCCCC
Confidence 25788888876554332 566553 5677788999999999853222 24567777766644 233 32222 2357
Q ss_pred CHHHHHHHhhhhhccCCC
Q 021286 273 DVFHTYFGVAGLSLLEYP 290 (314)
Q Consensus 273 d~~~T~~al~~L~l~~~~ 290 (314)
|++.|+++...|...|+.
T Consensus 294 DL~~tAL~FRLLRqhGy~ 311 (727)
T 3pya_A 294 DIDDTAMAFRLLRQHGYQ 311 (727)
T ss_dssp CHHHHHHHHHHHHHTTCC
T ss_pred CHHHHHHHHHHHHhCCCC
Confidence 999999999999999973
No 44
>2bb6_A TCII, TC II, transcobalamin II; alpha_6 - alpha_6 barrel, transport protein; HET: B12; 2.00A {Bos taurus} PDB: 2bbc_A* 2v3n_A* 2v3p_A* 2bb5_A*
Probab=97.95 E-value=6.9e-05 Score=69.29 Aligned_cols=133 Identities=12% Similarity=-0.031 Sum_probs=86.8
Q ss_pred HHHHHHHhCCCCccCHHHHHHHHHhccCCCCCCCCCCCCccchhhhHHHHHHHHHhhcCCc-----CCHHHHH----HHH
Q 021286 135 AICCLSILQRLDKINVDKAVEYIVSCKNLDGGFGCTPGGESHSGQIFCCVGALAIAGALHH-----VDKDLLG----WWL 205 (314)
Q Consensus 135 al~~l~ll~~~~~~~~~~~~~~l~~~q~~dGGf~~~p~~~s~~~~T~~al~~L~ll~~~~~-----~~~~~~~----~~L 205 (314)
++.+|+..|. . ..++.+..|...|. +++|... ...+...|..|+.||.-++..+. ..+++++ .+|
T Consensus 142 ~vLALC~~g~--~-v~~~~v~~Ll~~~~-~~~~~~g--~~~sVDT~AMA~lAL~C~~~~~~~~~~~~~i~~al~~l~~~l 215 (414)
T 2bb6_A 142 GILALCVHQK--R-VHDSVVGKLLYAVE-HKPHLLQ--DHVSVDTMAMAGMAFSCLELSNLNPKQRNRINLALKRVQEKI 215 (414)
T ss_dssp HHHHHHHTTC--C-CCHHHHHHHHHHHH-SSSCSCC--TTTHHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCC--C-ccHHHHHHHHHHhh-ccCcCCC--CcccccHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHHHHH
Confidence 4444554553 2 23345556666554 4456422 22355667666666666654211 1244555 888
Q ss_pred HccCcCCCcccCCCCCCCCchhHHHHHHHHHhhccCcc---cChHHHHHHHHhhcCCCCCCcCCCCCCCCCHHHHHHHhh
Q 021286 206 CERQVKSGGLNGRPEKLPDVCYSWWVLSSLIMIDRVHW---INKDKLVKFILDCQDMENGGISDRPDDAVDVFHTYFGVA 282 (314)
Q Consensus 206 ~~~Q~~~GGf~~~~~~~~d~~yt~~~~~~L~~l~~~~~---~~~~~~~~~l~~~Q~~~~GGf~~~p~~~~d~~~T~~al~ 282 (314)
++.|.+||+|+ +.+.|-+++++|...+...- ++..+.+++|++ |. .+|+|+ ++..|+-+|-
T Consensus 216 ~~~Q~~dG~FG-------N~~ST~lA~QAL~~~~~~~~~~~w~~~~a~~~Ll~-q~-~dG~F~-------np~ataQ~lp 279 (414)
T 2bb6_A 216 LKAQTPEGYFG-------NVYSTPLALQLLMGSLRPSVELGTACLKAKAALQA-SL-QHKTFQ-------NPLMISQLLP 279 (414)
T ss_dssp HHTBCTTSCBS-------STTTHHHHHHHHTTCSSCCHHHHHHHHHHHHHHHH-HH-TTTCCC-------SHHHHHHHHH
T ss_pred HHhhcCCCCcc-------chhhHHHHHHHHHhcCCCcccccchHHHHHHHHHH-hc-cCCCCC-------ChHHHHHHHH
Confidence 89999999995 46789999999999986321 256678999999 88 799997 5678888887
Q ss_pred hhhccCC
Q 021286 283 GLSLLEY 289 (314)
Q Consensus 283 ~L~l~~~ 289 (314)
+|.=-.+
T Consensus 280 aL~gkty 286 (414)
T 2bb6_A 280 VLNQKSY 286 (414)
T ss_dssp HTTTCCG
T ss_pred HhcCCCc
Confidence 7764444
No 45
>2pmv_A Gastric intrinsic factor; cobalamin transport protein alpha6-alpha6 motif two domain P transport protein; HET: NAG B12; 2.60A {Homo sapiens} PDB: 3kq4_A*
Probab=97.83 E-value=5.8e-05 Score=69.39 Aligned_cols=125 Identities=17% Similarity=0.082 Sum_probs=88.2
Q ss_pred HHHHHHHh--cCCCCccCHHHHHHHHHhccCCCCcccCCCCCCCchhhhHHHHHHHHHhcC---CC---------cccHH
Q 021286 38 WGLTTLDI--LGKLDAVDEEDVISWILKCQDESGGFAGNIGHDPHVLYTLSAVQVLALFDK---VD---------ILDAD 103 (314)
Q Consensus 38 ~al~~L~l--Lg~~~~~~~~~~~~~l~~~q~~dGGf~~~~~~~~~~~~T~~al~~L~~l~~---~~---------~~~~~ 103 (314)
++|..|++ .|.. ...+.++-|...|+.||+ .-++..+..|+.+|..+.. .. ...++
T Consensus 117 ~sL~vLALC~~~~~---v~~~~v~kLl~~~~~~g~-------~~sVDT~AMa~LAL~C~~~~~~~~~~~~~~~~i~~ai~ 186 (399)
T 2pmv_A 117 PSLAILALCQKNSE---ATLPIAVRFAKTLLANSS-------PFNVDTGAMATLALTCMYNKIPVGSEEGYRSLFGQVLK 186 (399)
T ss_dssp HHHHHHHHHHHCHH---HHHHHHHHHHHHHHHCCS-------CCCHHHHHHHHHHHHHHHTBCCTTCCSSHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCC---CCHHHHHHHHHHHHccCC-------cccchHHHHHHHHHHHHhhccccccchhhHHHHHHHHH
Confidence 45666654 3432 356677777777777742 2358888889999988864 11 11256
Q ss_pred HHHHHHHhccCCCCCcccCCCCCcccchHHHHHHHHHHhCCC-Ccc-CHHHHHHHHHhccCCCCCCCCCCCCccchhhhH
Q 021286 104 KVSNYIVGLQNEDGSFSGDIWGEVDTRFSYIAICCLSILQRL-DKI-NVDKAVEYIVSCKNLDGGFGCTPGGESHSGQIF 181 (314)
Q Consensus 104 ~~~~~l~~~Q~~dGgf~~~~~~~~d~~~ty~al~~l~ll~~~-~~~-~~~~~~~~l~~~q~~dGGf~~~p~~~s~~~~T~ 181 (314)
+++++|.+.|++||+|+ ++++|--|+.+|...+.. ... +..++.+||++ |..||+|. ++..|.
T Consensus 187 ~~~~~l~~~q~~dG~fG-------n~yST~LA~QAL~~~~~~~~~~W~c~~al~~l~~-q~~~G~F~-------np~~ta 251 (399)
T 2pmv_A 187 DIVEKISMKIKDNGIIG-------DIYSTGLAMQALSVTPEPSKKEWNCKKTTDMILN-EIKQGKFH-------NPMSIA 251 (399)
T ss_dssp HHHHHHTTSBCTTSCBS-------SHHHHHHHHHHHHHCSSCCSSCCCHHHHHHHHHH-HHTTTTTC-------SHHHHH
T ss_pred HHHHHHHHhhcCCCccc-------ccccHHHHHHHHHhcCCCccccccHHHHHHHHHH-HhhCCCcC-------CHHHHH
Confidence 78889999999999996 577787788888877752 122 78899999999 99999996 345666
Q ss_pred HHHHHH
Q 021286 182 CCVGAL 187 (314)
Q Consensus 182 ~al~~L 187 (314)
.++-+|
T Consensus 252 QilPaL 257 (399)
T 2pmv_A 252 QILPSL 257 (399)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 665444
No 46
>2pmv_A Gastric intrinsic factor; cobalamin transport protein alpha6-alpha6 motif two domain P transport protein; HET: NAG B12; 2.60A {Homo sapiens} PDB: 3kq4_A*
Probab=97.74 E-value=4.8e-05 Score=69.95 Aligned_cols=147 Identities=12% Similarity=0.096 Sum_probs=90.6
Q ss_pred HHHHHHHhcCCCcccHHHHHHHHHhccCCCCCcccCCCCCcccchHHHHHHHHHHhCC---CC---------ccCHHHHH
Q 021286 87 AVQVLALFDKVDILDADKVSNYIVGLQNEDGSFSGDIWGEVDTRFSYIAICCLSILQR---LD---------KINVDKAV 154 (314)
Q Consensus 87 al~~L~~l~~~~~~~~~~~~~~l~~~Q~~dGgf~~~~~~~~d~~~ty~al~~l~ll~~---~~---------~~~~~~~~ 154 (314)
++.+|++.-.-.++ ..+.+.-|...|+.||+ ..++..+..|+.+|..+.+ .. ...+++++
T Consensus 118 sL~vLALC~~~~~v-~~~~v~kLl~~~~~~g~-------~~sVDT~AMa~LAL~C~~~~~~~~~~~~~~~~i~~ai~~~~ 189 (399)
T 2pmv_A 118 SLAILALCQKNSEA-TLPIAVRFAKTLLANSS-------PFNVDTGAMATLALTCMYNKIPVGSEEGYRSLFGQVLKDIV 189 (399)
T ss_dssp HHHHHHHHHHCHHH-HHHHHHHHHHHHHHCCS-------CCCHHHHHHHHHHHHHHHTBCCTTCCSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCC-CHHHHHHHHHHHHccCC-------cccchHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHH
Confidence 45555554221222 44555666666666642 1256666666666666654 11 12356778
Q ss_pred HHHHhccCCCCCCCCCCCCccchhhhHHHHHHHHHhhcC--CcCCHHHHHHHHHccCcCCCcccCCCCCCCCchhHHHHH
Q 021286 155 EYIVSCKNLDGGFGCTPGGESHSGQIFCCVGALAIAGAL--HHVDKDLLGWWLCERQVKSGGLNGRPEKLPDVCYSWWVL 232 (314)
Q Consensus 155 ~~l~~~q~~dGGf~~~p~~~s~~~~T~~al~~L~ll~~~--~~~~~~~~~~~L~~~Q~~~GGf~~~~~~~~d~~yt~~~~ 232 (314)
++|.+.|++||+|| +...|.-|+.+|...+.. ...+..++.+||++ |..+|+|.. .- -..
T Consensus 190 ~~l~~~q~~dG~fG-------n~yST~LA~QAL~~~~~~~~~~W~c~~al~~l~~-q~~~G~F~n-------p~---~ta 251 (399)
T 2pmv_A 190 EKISMKIKDNGIIG-------DIYSTGLAMQALSVTPEPSKKEWNCKKTTDMILN-EIKQGKFHN-------PM---SIA 251 (399)
T ss_dssp HHHTTSBCTTSCBS-------SHHHHHHHHHHHHHCSSCCSSCCCHHHHHHHHHH-HHTTTTTCS-------HH---HHH
T ss_pred HHHHHhhcCCCccc-------ccccHHHHHHHHHhcCCCccccccHHHHHHHHHH-HhhCCCcCC-------HH---HHH
Confidence 88999999999997 467899999999998763 23478999999999 899999961 22 244
Q ss_pred HHHHhhccCcccChHHHHHHHHhhcCCCCCCcC
Q 021286 233 SSLIMIDRVHWINKDKLVKFILDCQDMENGGIS 265 (314)
Q Consensus 233 ~~L~~l~~~~~~~~~~~~~~l~~~Q~~~~GGf~ 265 (314)
+.|..|......|... ..|+. ..+-+.
T Consensus 252 QilPaL~~ktyldv~~-----~~C~~-~~~~~~ 278 (399)
T 2pmv_A 252 QILPSLKGKTYLDVPQ-----VTCSP-DHEVQP 278 (399)
T ss_dssp HHHHHHTTCCGGGGGG-----CCBSC-C-----
T ss_pred HHHHHhcCCCccCcCc-----CCCCC-Cccccc
Confidence 5566665555555431 35776 444443
No 47
>3p5p_A Taxadiene synthase; class I and II terpene cyclase fold, diterpene cyclase, DDXX NSE/DTE motif, 3-azacopalyl diphosphate; HET: A3C; 1.82A {Taxus brevifolia} PDB: 3p5r_A*
Probab=96.59 E-value=0.061 Score=53.78 Aligned_cols=140 Identities=19% Similarity=0.236 Sum_probs=84.2
Q ss_pred HHH--HHhccCCCCCcccCCCCCcccchHHHHHHHHHHhCCCCccCHHHHHHHHHhccCC-CCCCCCCCCCccchhhhHH
Q 021286 106 SNY--IVGLQNEDGSFSGDIWGEVDTRFSYIAICCLSILQRLDKINVDKAVEYIVSCKNL-DGGFGCTPGGESHSGQIFC 182 (314)
Q Consensus 106 ~~~--l~~~Q~~dGgf~~~~~~~~d~~~ty~al~~l~ll~~~~~~~~~~~~~~l~~~q~~-dGGf~~~p~~~s~~~~T~~ 182 (314)
++| +.+.|..||||..+| .+|.+++.- .+ -+++.+||.+..+. +||.... .+.+.....+
T Consensus 189 ~d~~~~~~~~~~~GS~~~SP------saTAa~l~~---~~------d~~~~~YL~~~~~~~~g~VP~~--yP~d~~e~l~ 251 (764)
T 3p5p_A 189 IDWNKIMRFQSKDGSFLSSP------ASTACVLMN---TG------DEKCFTFLNNLLDKFGGCVPCM--YSIDLLERLS 251 (764)
T ss_dssp CCTTGGGGGBCTTSCBTTBH------HHHHHHHHH---HC------CHHHHHHHHHHHHHHTSCCCSS--CCCHHHHHHH
T ss_pred ccHHHHHhccCCCCCcccCh------HHHHHHHHh---CC------ChhHHHHHHHHHHhcCCCCCCc--CCCcHHHHHH
Confidence 455 677788889887664 233333221 11 26889999886654 5554322 2345566678
Q ss_pred HHHHHHHhhcCCc--CCHHHHHHHHHccCcCCCccc-CCCCCCCCchhHHHHHHHHHhhccCcccChHHHHHHHHhhcCC
Q 021286 183 CVGALAIAGALHH--VDKDLLGWWLCERQVKSGGLN-GRPEKLPDVCYSWWVLSSLIMIDRVHWINKDKLVKFILDCQDM 259 (314)
Q Consensus 183 al~~L~ll~~~~~--~~~~~~~~~L~~~Q~~~GGf~-~~~~~~~d~~yt~~~~~~L~~l~~~~~~~~~~~~~~l~~~Q~~ 259 (314)
.|-+|..+|.-.. .+++.+++.+-+.....| .. ++++...|...|--+...|+..|.. +..+...+| .+
T Consensus 252 lID~LqrLGi~~hF~~EI~~~L~~i~~~~~~~g-i~~~~~~~~~Dl~~tAl~FRlLR~~Gy~--VS~dvf~~F----~d- 323 (764)
T 3p5p_A 252 LVDNIEHLGIGRHFKQEIKGALDYVYRHWSERG-IGWGRDSLVPDLNTTALGLRTLRMHGYN--VSSDVLNNF----KD- 323 (764)
T ss_dssp HHHHHHHHTCGGGGHHHHHHHHHHHHHTCCTTC-CCSSTTCSSCCHHHHHHHHHHHHHTTCC--CCGGGGGGG----BC-
T ss_pred HHHHHHHcCCccccHHHHHHHHHHHHHHhhhcc-cccccCCCCCCHHHHHHHHHHHHhcCCC--ccHhHHHhh----hc-
Confidence 8888888886433 346788888876443333 32 2344457888887777888888854 433322222 23
Q ss_pred CCCCcCCCCCC
Q 021286 260 ENGGISDRPDD 270 (314)
Q Consensus 260 ~~GGf~~~p~~ 270 (314)
.+|.|...++.
T Consensus 324 ~~g~F~~~~~~ 334 (764)
T 3p5p_A 324 ENGRFFSSAGQ 334 (764)
T ss_dssp TTSCBCSCTTC
T ss_pred CCCCccccccc
Confidence 57888876543
No 48
>3s9v_A Abietadiene synthase, chloroplastic; alpha bundle/barrel, lyase, isomerase; 2.30A {Abies grandis}
Probab=96.39 E-value=0.13 Score=51.62 Aligned_cols=136 Identities=18% Similarity=0.154 Sum_probs=81.0
Q ss_pred HHhccCCCCCcccCCCCCcccchHHHHHHHHHHhCCCCccCHHHHHHHHHhccCC-CCCCCCCCCCccchhhhHHHHHHH
Q 021286 109 IVGLQNEDGSFSGDIWGEVDTRFSYIAICCLSILQRLDKINVDKAVEYIVSCKNL-DGGFGCTPGGESHSGQIFCCVGAL 187 (314)
Q Consensus 109 l~~~Q~~dGgf~~~~~~~~d~~~ty~al~~l~ll~~~~~~~~~~~~~~l~~~q~~-dGGf~~~p~~~s~~~~T~~al~~L 187 (314)
+.+.|.+||||..+| .+|.+++.- .+ + +++.+||.+..+. +||.... .+.+.....+.|-+|
T Consensus 218 v~~~q~~~GS~~~SP------saTAa~l~~---~~-----d-~~~~~YL~~~~~~~~g~VP~~--yP~d~~e~l~lID~L 280 (785)
T 3s9v_A 218 IMKLQSKDGSFLSSP------ASTAAVFMR---TG-----N-KKCLDFLNFVLKKFGNHVPCH--YPLDLFERLWAVDTV 280 (785)
T ss_dssp HHTTCCTTSCBTTBH------HHHHHHHHH---HC-----C-HHHHHHHHHHHHHHSSCCCSS--CCCHHHHHHHHHHHH
T ss_pred HHhccCCCCCcccCH------HHHHHHHHh---CC-----C-hhHHHHHHHHHHhcCCCCCCc--CCCcHHHHHHHHHHH
Confidence 557788899998765 233333221 11 2 6889999887654 4544322 233556667888888
Q ss_pred HHhhcCCc--CCHHHHHHHHHccCcCCCcccCCC-CCCCCchhHHHHHHHHHhhccCcccChHHHHHHHHhhcCCCCCCc
Q 021286 188 AIAGALHH--VDKDLLGWWLCERQVKSGGLNGRP-EKLPDVCYSWWVLSSLIMIDRVHWINKDKLVKFILDCQDMENGGI 264 (314)
Q Consensus 188 ~ll~~~~~--~~~~~~~~~L~~~Q~~~GGf~~~~-~~~~d~~yt~~~~~~L~~l~~~~~~~~~~~~~~l~~~Q~~~~GGf 264 (314)
..+|.... .+++.+++.+-+.....| ....+ +...|...|--+...|+..|.. +..+...+| .+ .+|.|
T Consensus 281 qrLGi~~hF~~EI~~~L~~i~~~~~~~g-i~~~~~~~~~Dl~~tAl~FRlLR~~Gy~--VS~dvf~~F----~d-~~g~F 352 (785)
T 3s9v_A 281 ERLGIDRHFKEEIKEALDYVYSHWDERG-IGWARENPVPDIDDTAMGLRILRLHGYN--VSSDVLKTF----RD-ENGEF 352 (785)
T ss_dssp HHTTCGGGGHHHHHHHHHHHHTTCCTTC-CCSSTTCSSCCHHHHHHHHHHHHHTTCC--CCGGGGGGG----BC-TTSCB
T ss_pred HHcCCccccHHHHHHHHHHHHHHhhhcc-ccccccCCCCCHHHHHHHHHHHHhcCCC--CCHHHHHHH----Hh-cCCCe
Confidence 88886433 246788888876443333 22222 2346888887777788888854 433322222 23 57888
Q ss_pred CCCCC
Q 021286 265 SDRPD 269 (314)
Q Consensus 265 ~~~p~ 269 (314)
...++
T Consensus 353 ~~~~~ 357 (785)
T 3s9v_A 353 FCFLG 357 (785)
T ss_dssp CSSTT
T ss_pred eeccc
Confidence 77654
No 49
>3pya_A ENT-copalyl diphosphate synthase, chloroplastic; class I and II terpene cyclase fold, class II diterpene CYCL DXXDD motif; HET: AG8 1PE; 2.25A {Arabidopsis thaliana} PDB: 3pyb_A*
Probab=95.92 E-value=0.24 Score=49.16 Aligned_cols=135 Identities=16% Similarity=0.093 Sum_probs=78.4
Q ss_pred HHhccCCCCCcccCCCCCcccchHHHHHHHHHHhCCCCccCHHHHHHHHHhccCCCCCCCCCCCC-ccchhhhHHHHHHH
Q 021286 109 IVGLQNEDGSFSGDIWGEVDTRFSYIAICCLSILQRLDKINVDKAVEYIVSCKNLDGGFGCTPGG-ESHSGQIFCCVGAL 187 (314)
Q Consensus 109 l~~~Q~~dGgf~~~~~~~~d~~~ty~al~~l~ll~~~~~~~~~~~~~~l~~~q~~dGGf~~~p~~-~s~~~~T~~al~~L 187 (314)
+...|..||||..+| .+|.+++. .. .-+++.+||.+....-| |..|.. +.+.....+.|-+|
T Consensus 193 ~~~~q~~~GS~~~SP------saTAa~l~-----~~----~d~~~l~YL~~~v~k~~--g~VP~~yP~d~~e~L~lID~L 255 (727)
T 3pya_A 193 LLKLQSQDGSFLFSP------SSTAFAFM-----QT----RDSNCLEYLRNAVKRFN--GGVPNVFPVDLFEHIWIVDRL 255 (727)
T ss_dssp HGGGCCTTSSBTTBH------HHHHHHHH-----HH----CCHHHHHHHHHHHHHTT--TCCCSSCCCHHHHHHHHHHHH
T ss_pred HhcccCCCCCcccCH------HHHHHHHh-----cC----CCHHHHHHHHHHHHHcC--CCCCCCCCCcHHHHHHHHHHH
Confidence 556778899987665 23333322 11 12688999988765432 233442 34556667888888
Q ss_pred HHhhcCCc--CCHHHHHHHHHccCcCCCcccCC-CCCCCCchhHHHHHHHHHhhccCcccChHHHHHHHHhhcCCCCCCc
Q 021286 188 AIAGALHH--VDKDLLGWWLCERQVKSGGLNGR-PEKLPDVCYSWWVLSSLIMIDRVHWINKDKLVKFILDCQDMENGGI 264 (314)
Q Consensus 188 ~ll~~~~~--~~~~~~~~~L~~~Q~~~GGf~~~-~~~~~d~~yt~~~~~~L~~l~~~~~~~~~~~~~~l~~~Q~~~~GGf 264 (314)
..+|.... .+++.+++.+-+....+| .... .....|.+.|--+...|+..|.. +..+-.-+| . .+|.|
T Consensus 256 qRLGIs~hFe~EI~~~L~~i~~~~~~~g-~~~~~~~~~~DL~~tAL~FRLLRqhGy~--VS~DvF~~F-----k-~~G~F 326 (727)
T 3pya_A 256 QRLGISRYFEEEIKECLDYVHRYWTDNG-ICWARCSHVQDIDDTAMAFRLLRQHGYQ--VSADVFKNF-----E-KEGEF 326 (727)
T ss_dssp HHTTCGGGGHHHHHHHHHHHHHTCCTTC-CCSSSSCSCCCHHHHHHHHHHHHHTTCC--CCGGGGGGG-----E-ETTEE
T ss_pred HHcCCccccHHHHHHHHHHHHHHhhhcC-cccccCCCCCCHHHHHHHHHHHHhCCCC--CCHHHHHhc-----c-CCCcc
Confidence 88886433 346788888866433333 2222 22346888887777778887854 433322222 1 35778
Q ss_pred CCCCC
Q 021286 265 SDRPD 269 (314)
Q Consensus 265 ~~~p~ 269 (314)
.-.++
T Consensus 327 ~~~~~ 331 (727)
T 3pya_A 327 FCFVG 331 (727)
T ss_dssp CSSTT
T ss_pred ccccc
Confidence 75443
No 50
>3sdr_A Alpha-bisabolene synthase; lyase, terpene synthase; HET: 210; 1.86A {Abies grandis} PDB: 3sdq_A 3sae_A* 3sdt_A* 3sdu_A* 3sdv_A*
Probab=94.59 E-value=0.036 Score=55.89 Aligned_cols=103 Identities=17% Similarity=0.117 Sum_probs=60.4
Q ss_pred HHHHHHHHHhccC---CCCcccCCCCCCCchhhhHHHHHHHHHhcCCCcccHHHHHHHHHhccCCCCCcccCCCC--Ccc
Q 021286 54 EEDVISWILKCQD---ESGGFAGNIGHDPHVLYTLSAVQVLALFDKVDILDADKVSNYIVGLQNEDGSFSGDIWG--EVD 128 (314)
Q Consensus 54 ~~~~~~~l~~~q~---~dGGf~~~~~~~~~~~~T~~al~~L~~l~~~~~~~~~~~~~~l~~~Q~~dGgf~~~~~~--~~d 128 (314)
.+..++-|+++.+ .||.++. ..+.++.|.+ |+.....+......-..+++||...|.+||||+..... ...
T Consensus 56 ~~~Lie~VK~~l~~~~~~g~~g~---~S~S~YDTAW-VAmvp~~~~~~~p~Fp~~~~wil~nQ~~DGsWg~~~~~~~~d~ 131 (817)
T 3sdr_A 56 AEVLVSEIKAMLNPAITGDGESM---ITPSAYDTAW-VARVPAIDGSARPQFPQTVDWILKNQLKDGSWGIQSHFLLSDR 131 (817)
T ss_dssp HHHHHHHHHHHHHHHHTSSCCCC---CCCCHHHHHH-HHTCBCTTSCSSBSSHHHHHHHHHCCCTTSCCSCTTCCCHHHH
T ss_pred HHHHHHHHHHHhccccCCCCCcc---cccCHHHhhH-HheeecCCCCCCCCchHHHHHHHHccCCCCCCCCCCCcchHHH
Confidence 3445666666543 5552332 3567899999 32221122222333478999999999999999853211 112
Q ss_pred cchHHHHHHHHHHhCCCCccCHHHHHHHHHhcc
Q 021286 129 TRFSYIAICCLSILQRLDKINVDKAVEYIVSCK 161 (314)
Q Consensus 129 ~~~ty~al~~l~ll~~~~~~~~~~~~~~l~~~q 161 (314)
+..|-+++.+|.--+. ....+++++.||.+.-
T Consensus 132 ll~TlAcvlAL~~w~~-~~~~i~~Gl~fl~~nl 163 (817)
T 3sdr_A 132 LLATLSCVLVLLKWNV-GDLQVEQGIEFIKSNL 163 (817)
T ss_dssp HHHHHHHHHHHHHTTC-CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccC-CHHHHHHHHHHHHHHH
Confidence 3445555555544332 3456889999998753
No 51
>3k11_A Putative glycosyl hydrolase; structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; HET: MSE MES; 1.80A {Bacteroides thetaiotaomicron vpi-5482}
Probab=78.46 E-value=26 Score=32.48 Aligned_cols=163 Identities=10% Similarity=0.034 Sum_probs=80.5
Q ss_pred HHHHHHHHHhcc--CCCCcccCCCCCCCc--hhhhHHHHHHHHHhcCC--Ccc--cHHH----HHHHHHhccCC-CCCcc
Q 021286 54 EEDVISWILKCQ--DESGGFAGNIGHDPH--VLYTLSAVQVLALFDKV--DIL--DADK----VSNYIVGLQNE-DGSFS 120 (314)
Q Consensus 54 ~~~~~~~l~~~q--~~dGGf~~~~~~~~~--~~~T~~al~~L~~l~~~--~~~--~~~~----~~~~l~~~Q~~-dGgf~ 120 (314)
.+...+||.+.+ +++|||--....... +...|+++-.|..++.. +.. -.+. ...+...++++ .|-|.
T Consensus 170 a~~~ad~L~~~~pRt~~Ggf~h~~~~~~q~WiD~lyM~~pfla~~~~~tgd~~~~y~d~A~~q~~~~~~~l~D~~tGL~~ 249 (445)
T 3k11_A 170 IQNYFDFIINKEYRLADGTFARNRPQRNTLWLDDMFMGIPAVAQMSRYDKEAKNKYLAEAVKQFLQFADRMFIPEKGLYR 249 (445)
T ss_dssp HHHHHHHHHHTSCBCTTCCBCBCSSSTTEEETHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHEETTTTEEC
T ss_pred HHHHHHHHHHcCCCCCCCceeecCCCCCceEecchhhHHHHHHHHHHHHCCcchHHHHHHHHHHHHHHHhcccCCCCCEe
Confidence 466778999887 678998754322222 23445777777666421 111 1222 22334445544 45543
Q ss_pred cC--CCC-C-cc---cchHHHHHHHHHH----hCCCCc------cCHHHHHHHHHhccCCCCCCCCCCC---Cccchhhh
Q 021286 121 GD--IWG-E-VD---TRFSYIAICCLSI----LQRLDK------INVDKAVEYIVSCKNLDGGFGCTPG---GESHSGQI 180 (314)
Q Consensus 121 ~~--~~~-~-~d---~~~ty~al~~l~l----l~~~~~------~~~~~~~~~l~~~q~~dGGf~~~p~---~~s~~~~T 180 (314)
.. ..+ . .. .|..-|++.++.. +..... ...++.++.++++|.+||-|-.... ...+...|
T Consensus 250 Hg~~~~~~~~~~~~WaRGnGW~~~gl~~~l~~lp~~~~~r~~l~~~~~~~a~~l~~~Q~~~G~W~~vld~~~~y~EsSaT 329 (445)
T 3k11_A 250 HGWVESSTDHPAFCWARANGWALLTACELLDVLPEDYPQRPKVMDYFRAHVRGVTALQSGEGFWHQLLDCNDSYLETSAT 329 (445)
T ss_dssp SEEETTCSSCCCCCBHHHHHHHHHHHHHHHHHSCTTCTTHHHHHHHHHHHHHHHHTTCCTTSCEESBTTCTTSCEEHHHH
T ss_pred eeecCCCCCCCcceecccchHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHHhCCCCCchhhccCCCCCCCCccHH
Confidence 21 111 1 11 1333344444332 221111 1245788899999999998865433 22233223
Q ss_pred H---HHHHHHHHhhcCCc----CCHHHHHHHHHccCcCCCccc
Q 021286 181 F---CCVGALAIAGALHH----VDKDLLGWWLCERQVKSGGLN 216 (314)
Q Consensus 181 ~---~al~~L~ll~~~~~----~~~~~~~~~L~~~Q~~~GGf~ 216 (314)
. |++.-....|.++. ...+++.+.|.++..+||-..
T Consensus 330 Amfaygllkgvr~G~Ld~~~Y~~~A~ka~~~L~~~i~~dG~l~ 372 (445)
T 3k11_A 330 AIYVYCLAHAINKGWIDAIAYGPVAQLGWHAVAGKINEEGQVE 372 (445)
T ss_dssp HHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHTTBCTTSCBC
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhCCCCCCEe
Confidence 2 22222222333332 124678888888777777543
No 52
>3k11_A Putative glycosyl hydrolase; structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; HET: MSE MES; 1.80A {Bacteroides thetaiotaomicron vpi-5482}
Probab=69.77 E-value=66 Score=29.75 Aligned_cols=163 Identities=12% Similarity=0.044 Sum_probs=80.6
Q ss_pred HHHHHHHHHhcc--CCCCCcccCCCCC--cccchHHHHHHHHHHhCCCC--cc--CHHHHH----HHHHhccCC-CCCCC
Q 021286 102 ADKVSNYIVGLQ--NEDGSFSGDIWGE--VDTRFSYIAICCLSILQRLD--KI--NVDKAV----EYIVSCKNL-DGGFG 168 (314)
Q Consensus 102 ~~~~~~~l~~~Q--~~dGgf~~~~~~~--~d~~~ty~al~~l~ll~~~~--~~--~~~~~~----~~l~~~q~~-dGGf~ 168 (314)
.+...+||...+ .++|+|....... .=+...|+++-.|+.++... .. ..+.++ .+...++++ +|-|-
T Consensus 170 a~~~ad~L~~~~pRt~~Ggf~h~~~~~~q~WiD~lyM~~pfla~~~~~tgd~~~~y~d~A~~q~~~~~~~l~D~~tGL~~ 249 (445)
T 3k11_A 170 IQNYFDFIINKEYRLADGTFARNRPQRNTLWLDDMFMGIPAVAQMSRYDKEAKNKYLAEAVKQFLQFADRMFIPEKGLYR 249 (445)
T ss_dssp HHHHHHHHHHTSCBCTTCCBCBCSSSTTEEETHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHEETTTTEEC
T ss_pred HHHHHHHHHHcCCCCCCCceeecCCCCCceEecchhhHHHHHHHHHHHHCCcchHHHHHHHHHHHHHHHhcccCCCCCEe
Confidence 456778899888 5689997542111 11234566666666555422 11 233333 233334443 34332
Q ss_pred CC----CCCccc---hhhhHHHHHHHHHh-hcC--CcC-------CHHHHHHHHHccCcCCCcccCCCC---CCCCchhH
Q 021286 169 CT----PGGESH---SGQIFCCVGALAIA-GAL--HHV-------DKDLLGWWLCERQVKSGGLNGRPE---KLPDVCYS 228 (314)
Q Consensus 169 ~~----p~~~s~---~~~T~~al~~L~ll-~~~--~~~-------~~~~~~~~L~~~Q~~~GGf~~~~~---~~~d~~yt 228 (314)
+. .+..+. ++.-.|++.+|..+ ... +.. ..++.++.+.+.|.++|-|--..+ ...|+.-|
T Consensus 250 Hg~~~~~~~~~~~~WaRGnGW~~~gl~~~l~~lp~~~~~r~~l~~~~~~~a~~l~~~Q~~~G~W~~vld~~~~y~EsSaT 329 (445)
T 3k11_A 250 HGWVESSTDHPAFCWARANGWALLTACELLDVLPEDYPQRPKVMDYFRAHVRGVTALQSGEGFWHQLLDCNDSYLETSAT 329 (445)
T ss_dssp SEEETTCSSCCCCCBHHHHHHHHHHHHHHHHHSCTTCTTHHHHHHHHHHHHHHHHTTCCTTSCEESBTTCTTSCEEHHHH
T ss_pred eeecCCCCCCCcceecccchHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHHhCCCCCchhhccCCCCCCCCccHH
Confidence 21 111111 23445666666553 221 111 146788899999999998865433 33343333
Q ss_pred HH-HHHHHHhhccCcccC-------hHHHHHHHHhhcCCCCCCcCC
Q 021286 229 WW-VLSSLIMIDRVHWIN-------KDKLVKFILDCQDMENGGISD 266 (314)
Q Consensus 229 ~~-~~~~L~~l~~~~~~~-------~~~~~~~l~~~Q~~~~GGf~~ 266 (314)
-- +.+-+.... ..+.+ .+++.+.|..+-+ ++|-..+
T Consensus 330 Amfaygllkgvr-~G~Ld~~~Y~~~A~ka~~~L~~~i~-~dG~l~~ 373 (445)
T 3k11_A 330 AIYVYCLAHAIN-KGWIDAIAYGPVAQLGWHAVAGKIN-EEGQVEG 373 (445)
T ss_dssp HHHHHHHHHHHH-HTSSCHHHHHHHHHHHHHHHHTTBC-TTSCBCS
T ss_pred HHHHHHHHHHHH-cCCCCHHHHHHHHHHHHHHHHHhCC-CCCCEec
Confidence 22 222222221 22332 2456777777666 6775543
No 53
>1wgn_A UBAP1, ubiquitin associated protein; ubiquitin associated protein 1 (UBAP1), UBA domain, structural genomics; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=47.44 E-value=28 Score=22.68 Aligned_cols=28 Identities=7% Similarity=0.271 Sum_probs=20.4
Q ss_pred HHHHHHHHhCCCCccCHHHHHHHHHhccCCCC
Q 021286 134 IAICCLSILQRLDKINVDKAVEYIVSCKNLDG 165 (314)
Q Consensus 134 ~al~~l~ll~~~~~~~~~~~~~~l~~~q~~dG 165 (314)
.|..+|..-+. +++++++||.+...+.-
T Consensus 35 qA~kALKat~~----NvErAaDWLFSH~D~~~ 62 (63)
T 1wgn_A 35 CVLRAMKKKGE----NIEQILDYLFAHSGPSS 62 (63)
T ss_dssp HHHHHHHHHCS----CHHHHHHHHHHHSCCCC
T ss_pred HHHHHHHHcCC----CHHHHHHHHHhCCCCCC
Confidence 35566665543 89999999999876653
No 54
>3pmm_A Putative cytoplasmic protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics; 1.90A {Klebsiella pneumoniae subsp} PDB: 3qwt_A
Probab=38.05 E-value=71 Score=28.77 Aligned_cols=164 Identities=10% Similarity=0.052 Sum_probs=79.9
Q ss_pred HHHHHHHHHhcc--CCCCcccCCCC---CCCch-hh-hHHHHHHHHHhc----CCCccc--HHHHHHHHHhccCC-CCCc
Q 021286 54 EEDVISWILKCQ--DESGGFAGNIG---HDPHV-LY-TLSAVQVLALFD----KVDILD--ADKVSNYIVGLQNE-DGSF 119 (314)
Q Consensus 54 ~~~~~~~l~~~q--~~dGGf~~~~~---~~~~~-~~-T~~al~~L~~l~----~~~~~~--~~~~~~~l~~~Q~~-dGgf 119 (314)
.+...++|...+ +++|||-.... ....+ .. .+.++-.|..+. +..-.+ ......+.+.++++ +|-|
T Consensus 135 a~~~ad~L~~~~~r~~~Ggf~~~~~~~~~~~~~WiDgl~M~~p~La~~~~~tgd~~y~d~A~~q~~~~~~~l~D~~tGl~ 214 (382)
T 3pmm_A 135 LESWAEWAMHEMPRTEQGGMQHMTLAEENHQQMWDDTLMMTVLPLAKIGKLLNRPQYVEEATYQFLLHVQNLMDRETGLW 214 (382)
T ss_dssp HHHHHHHHHHTSCBCGGGCBCCCCSSCCCTTEEETTHHHHTHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHBCTTTSCB
T ss_pred HHHHHHHHHhhCCCCcCCCeeeecCCCCCCCcEEecchhhhHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHccCCCCCCe
Confidence 345667886554 56888864321 11122 23 466666665553 211111 23344445556654 5665
Q ss_pred ccCC--CCC----c--ccchHHHHHHHHH----HhCCCC--c------cCHHHHHHHHHhccCCCCCCCCCCCC---ccc
Q 021286 120 SGDI--WGE----V--DTRFSYIAICCLS----ILQRLD--K------INVDKAVEYIVSCKNLDGGFGCTPGG---ESH 176 (314)
Q Consensus 120 ~~~~--~~~----~--d~~~ty~al~~l~----ll~~~~--~------~~~~~~~~~l~~~q~~dGGf~~~p~~---~s~ 176 (314)
.... .+. . =.|..-|++.++. .+..+. . ...++.+++++++|.+||-|-..... ..+
T Consensus 215 ~h~~~~~~~~~~~~~~WaRG~gW~~~gl~~~l~~l~~p~~~~~~~~~~~~~~~~a~~~~~~q~~~G~W~~~~d~~~~y~E 294 (382)
T 3pmm_A 215 FHGWNYEGRHNFARARWARGNSWLTMVIPDFLELVDLPEGNAVRRYLITVLDAQIAALAECQDDSGLWHTLLDDPHSYLE 294 (382)
T ss_dssp CSEEETTTTBCTTCCCBHHHHHHHHHHHHHHHHHHCCCTTCHHHHHHHHHHHHHHHHHHHHCCTTSCEESBTTCTTSCEE
T ss_pred eeeccCCCCCCCCcceecccccHHHHHHHHHHHhhcCCcchhhHHHHHHHHHHHHHHHHHcCCCCCChhhccCCCCCCcc
Confidence 3210 111 1 1133334444433 322111 1 12457889999999999988755332 223
Q ss_pred hhhhHHHHHHHHH---hhcCCcC---CHHHHHHHHHccCcCCCcccC
Q 021286 177 SGQIFCCVGALAI---AGALHHV---DKDLLGWWLCERQVKSGGLNG 217 (314)
Q Consensus 177 ~~~T~~al~~L~l---l~~~~~~---~~~~~~~~L~~~Q~~~GGf~~ 217 (314)
...|...+.+|.. .|..+.. ..+++.+-|.++..+||-..+
T Consensus 295 sSatA~~ay~ll~~~~~g~l~~~Y~~~a~ka~~~l~~~i~~dG~l~~ 341 (382)
T 3pmm_A 295 ASATAGFAYGILKAVRKRYVGQHYAGVAEKAIRGIVQNISPQGELLQ 341 (382)
T ss_dssp HHHHHHHHHHHHHHHHTTSSCGGGHHHHHHHHHHHHHTBCTTSCBCS
T ss_pred ccHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHhhCCCCCCEeC
Confidence 3333322222222 2233211 256788888888778876544
No 55
>3pmm_A Putative cytoplasmic protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics; 1.90A {Klebsiella pneumoniae subsp} PDB: 3qwt_A
Probab=34.55 E-value=1.1e+02 Score=27.51 Aligned_cols=69 Identities=19% Similarity=0.081 Sum_probs=42.5
Q ss_pred HHHHHHHHHhccCCCCCcccCCCC-CcccchHHHHHHHHHHh-----CCCCc---cCHHHHHHHHHhccCCCCCCCCC
Q 021286 102 ADKVSNYIVGLQNEDGSFSGDIWG-EVDTRFSYIAICCLSIL-----QRLDK---INVDKAVEYIVSCKNLDGGFGCT 170 (314)
Q Consensus 102 ~~~~~~~l~~~Q~~dGgf~~~~~~-~~d~~~ty~al~~l~ll-----~~~~~---~~~~~~~~~l~~~q~~dGGf~~~ 170 (314)
..++++++.+.|.+||-|...... .+-..++-+|+.+..++ |.++. ...+++.+-|.++.++||-.+..
T Consensus 265 ~~~~a~~~~~~q~~~G~W~~~~d~~~~y~EsSatA~~ay~ll~~~~~g~l~~~Y~~~a~ka~~~l~~~i~~dG~l~~v 342 (382)
T 3pmm_A 265 LDAQIAALAECQDDSGLWHTLLDDPHSYLEASATAGFAYGILKAVRKRYVGQHYAGVAEKAIRGIVQNISPQGELLQT 342 (382)
T ss_dssp HHHHHHHHHHHCCTTSCEESBTTCTTSCEEHHHHHHHHHHHHHHHHTTSSCGGGHHHHHHHHHHHHHTBCTTSCBCSC
T ss_pred HHHHHHHHHHcCCCCCChhhccCCCCCCccccHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHhhCCCCCCEeCe
Confidence 357888899999999988643221 12223344444444433 22222 23578899999999999876544
No 56
>3ren_A Glycosyl hydrolase, family 8; (alpha/alpha)6-barrel fold, alpha-amylase; 2.00A {Clostridium perfringens}
Probab=33.51 E-value=43 Score=30.00 Aligned_cols=59 Identities=15% Similarity=0.048 Sum_probs=42.5
Q ss_pred HHHHHHHHHHHhcCCCCccCHHHHHHHHHhccCCC------CcccCCCCCCCchhhhHHHHHHHH
Q 021286 34 NGAYWGLTTLDILGKLDAVDEEDVISWILKCQDES------GGFAGNIGHDPHVLYTLSAVQVLA 92 (314)
Q Consensus 34 ~~~~~al~~L~lLg~~~~~~~~~~~~~l~~~q~~d------GGf~~~~~~~~~~~~T~~al~~L~ 92 (314)
...++|++++..+...+.+..+.+++-+...|.+| |||+.......|...-..|+.+..
T Consensus 282 S~g~yAiaal~~~~~~D~~la~~~~~rm~~fq~~d~~s~yyGG~~~~~~~~~~sfdNL~~LlA~~ 346 (350)
T 3ren_A 282 SPSIYSNVALIANYIGDKELFNKAIDKLKYYQIKNKDSVLYGGFGDEKTNSVYSFDNLNALLAFQ 346 (350)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCCCTTSTTTTSCSBTTTTBCBHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcccCCCCcccCCcccccCCCceeeeccHHHHHHHH
Confidence 34788888888765445556788888888887766 888876555677777777776654
No 57
>4ae4_A Ubiquitin-associated protein 1; protein transport, endosomal sorting, tetherin, VPU, HIV-1, monoubiquitin; HET: NHE; 1.65A {Homo sapiens} PDB: 4ae4_B*
Probab=29.92 E-value=64 Score=23.91 Aligned_cols=60 Identities=18% Similarity=0.228 Sum_probs=32.9
Q ss_pred CHHHHHHHHHhccC-CCCCCCC---------CCCCccchhhhHHHHHHHHHhhcC----------CcCCHHHHHHHHHcc
Q 021286 149 NVDKAVEYIVSCKN-LDGGFGC---------TPGGESHSGQIFCCVGALAIAGAL----------HHVDKDLLGWWLCER 208 (314)
Q Consensus 149 ~~~~~~~~l~~~q~-~dGGf~~---------~p~~~s~~~~T~~al~~L~ll~~~----------~~~~~~~~~~~L~~~ 208 (314)
+.+++++||..++. .|-|+.. ....++....-...+..|.-+|-. ..-|++++++||.+|
T Consensus 35 ~~e~amewL~~h~~L~d~~~d~~~~e~~l~~~~~~~~~~~~~~~~v~~L~eMGF~~~~a~~AL~~~~nd~erAlewL~~~ 114 (118)
T 4ae4_A 35 NIEQILDYLFAHGQLCEKGFDPLLVEEALEMHQCSEEKMMEFLQLMSKFKEMGFELKDIKEVLLLHNNDQDNALEDLMAR 114 (118)
T ss_dssp CHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHhchhcccCCChhhhHHHHHhccCCccccccCHHHHHHHHHcCCCHHHHHHHHHHcCCCHHHHHHHHHHh
Confidence 68899999998863 2333321 001111111112345555555521 234789999999886
No 58
>2dna_A Unnamed protein product; ubiquitin associated domain, DSK2 protein, proteasome, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.5.2.1
Probab=27.44 E-value=77 Score=20.97 Aligned_cols=17 Identities=18% Similarity=0.376 Sum_probs=14.3
Q ss_pred CHHHHHHHHHhccCCCC
Q 021286 149 NVDKAVEYIVSCKNLDG 165 (314)
Q Consensus 149 ~~~~~~~~l~~~q~~dG 165 (314)
+++++++||.+.+..+|
T Consensus 47 nve~Ave~L~~~~~~~~ 63 (67)
T 2dna_A 47 DTNAAIYKLKSSQGFSG 63 (67)
T ss_dssp CHHHHHHHHHHCCSSSC
T ss_pred CHHHHHHHHHhCCCccC
Confidence 78999999999876554
No 59
>3ren_A Glycosyl hydrolase, family 8; (alpha/alpha)6-barrel fold, alpha-amylase; 2.00A {Clostridium perfringens}
Probab=25.31 E-value=1.9e+02 Score=25.74 Aligned_cols=144 Identities=18% Similarity=0.132 Sum_probs=70.7
Q ss_pred cchhHHHHHHHHHHHhcCCCC---ccCHHHHHHHHHhccCCCC-cccCCC---C-----CCCchhhhHHHHHH-HHHhcC
Q 021286 30 HLRLNGAYWGLTTLDILGKLD---AVDEEDVISWILKCQDESG-GFAGNI---G-----HDPHVLYTLSAVQV-LALFDK 96 (314)
Q Consensus 30 ~~~~~~~~~al~~L~lLg~~~---~~~~~~~~~~l~~~q~~dG-Gf~~~~---~-----~~~~~~~T~~al~~-L~~l~~ 96 (314)
...++..||...++..+.... ....++..+.|..-..+|+ +|.... . .+..+ .|--++.+ |.+...
T Consensus 166 ~~~ln~SY~~~~a~~~f~~~~~~W~~l~~~g~~lL~~g~p~D~~~l~~~~~~~~~~~y~yd~~v-n~iDalrv~L~La~~ 244 (350)
T 3ren_A 166 GNTTTLCYLDLPTMKLLSQVDKKWEGIYEKSNSIIENGKISEEVPLYRKVFYEETQKYDEEENV-DFLLSTIVILNRIEA 244 (350)
T ss_dssp CSEEEGGGCCHHHHHHHHHHCTHHHHHHHHHHHHHHTTBCCSSSCCBCSEEETTTTEECCCSEE-EHHHHHHHHHHHHHT
T ss_pred CCEeehHhcCHHHHHHHHHhcchHHHHHHHHHHHHHhCCCCcccccCCcccccCCCCccccccc-chHHHHHHHHHHHhc
Confidence 444556888777777665322 1235667777777445553 333210 0 11111 22233332 332211
Q ss_pred CCcccHHHHHHHHHhccCCCC----CcccCCCC--CcccchHHHHHHHHHHhCCCCccCHHHHHHHHHhccCCC------
Q 021286 97 VDILDADKVSNYIVGLQNEDG----SFSGDIWG--EVDTRFSYIAICCLSILQRLDKINVDKAVEYIVSCKNLD------ 164 (314)
Q Consensus 97 ~~~~~~~~~~~~l~~~Q~~dG----gf~~~~~~--~~d~~~ty~al~~l~ll~~~~~~~~~~~~~~l~~~q~~d------ 164 (314)
.. +.....+|++.....+| .|....+. .......+.|++++..+..-+..-.+.+++-+...|..|
T Consensus 245 -g~-~~~~~~~fl~~~~~~~g~l~~~y~~~tg~~~~~~eS~g~yAiaal~~~~~~D~~la~~~~~rm~~fq~~d~~s~yy 322 (350)
T 3ren_A 245 -GE-NEESSIKWIKEKFKKDGFLVATYNGKNGDATSQIESPSIYSNVALIANYIGDKELFNKAIDKLKYYQIKNKDSVLY 322 (350)
T ss_dssp -TC-CCHHHHHHHHHHHHHHSSCCSEEETTTCCBCCCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCCCTTSTTT
T ss_pred -CC-CcHHHHHHHHHHHhhcCCcceEEECCCCCcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcccCCCCcccC
Confidence 11 23345888885322133 23211111 122344556666665543323445677888888888777
Q ss_pred CCCCCCCCCccc
Q 021286 165 GGFGCTPGGESH 176 (314)
Q Consensus 165 GGf~~~p~~~s~ 176 (314)
|||+.......|
T Consensus 323 GG~~~~~~~~~~ 334 (350)
T 3ren_A 323 GGFGDEKTNSVY 334 (350)
T ss_dssp TSCSBTTTTBCB
T ss_pred CcccccCCCcee
Confidence 888876554443
No 60
>2ip6_A PAPB, PEDB; immunity protein to the pediocin PP-1, antimicrobial protein; 1.35A {Pediococcus pentosaceus}
Probab=23.49 E-value=79 Score=22.81 Aligned_cols=44 Identities=18% Similarity=0.268 Sum_probs=28.1
Q ss_pred cccchHHHHHHHHHHhCCCCc-cCHHHHHHHHHhccCCCCCCCCC
Q 021286 127 VDTRFSYIAICCLSILQRLDK-INVDKAVEYIVSCKNLDGGFGCT 170 (314)
Q Consensus 127 ~d~~~ty~al~~l~ll~~~~~-~~~~~~~~~l~~~q~~dGGf~~~ 170 (314)
...|.+|--+...++...+.- .+-.++.+=|...-.++||||..
T Consensus 56 ~EAR~vYqni~t~clveklhl~~eE~~~L~~I~~ia~S~~~WGgl 100 (112)
T 2ip6_A 56 RQARVVYNKIASQALVDKLHFTAEENKVLAAINELAHSQKGWGEF 100 (112)
T ss_dssp HHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTC-------
T ss_pred HHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccccccc
Confidence 356889999999999987542 34456788888888899999765
No 61
>1vej_A Riken cDNA 4931431F19; UBA domain, three helix bundle, ubiquitin associated domain, structural genomics; NMR {Mus musculus} SCOP: a.5.2.1
Probab=21.27 E-value=1.1e+02 Score=20.54 Aligned_cols=18 Identities=11% Similarity=0.266 Sum_probs=14.1
Q ss_pred cCHHHHHHHHHhccCCCC
Q 021286 148 INVDKAVEYIVSCKNLDG 165 (314)
Q Consensus 148 ~~~~~~~~~l~~~q~~dG 165 (314)
-+++++++||.+.+-++-
T Consensus 56 Gnve~Ave~L~~~~~~~s 73 (74)
T 1vej_A 56 GDIHAAIEMLLGASGPSS 73 (74)
T ss_dssp SCHHHHHHHHHTCCCCCC
T ss_pred CCHHHHHHHHHhCCCCCC
Confidence 378999999998776543
No 62
>1nc5_A Hypothetical protein YTER; structural genomics, helix barrel, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.60A {Bacillus subtilis} SCOP: a.102.1.6 PDB: 2d8l_A* 2gh4_A*
Probab=21.17 E-value=1.7e+02 Score=25.96 Aligned_cols=65 Identities=20% Similarity=0.181 Sum_probs=36.3
Q ss_pred HHHHHHHHhccCC-CCCccc--CCCCC--cccchHHHHHHHHHHh-----CCCCc---cCHHHHHHHHHhc---cCCCCC
Q 021286 103 DKVSNYIVGLQNE-DGSFSG--DIWGE--VDTRFSYIAICCLSIL-----QRLDK---INVDKAVEYIVSC---KNLDGG 166 (314)
Q Consensus 103 ~~~~~~l~~~Q~~-dGgf~~--~~~~~--~d~~~ty~al~~l~ll-----~~~~~---~~~~~~~~~l~~~---q~~dGG 166 (314)
+++.+++.+.|.+ ||.|.. ..... +-...+-+|+.+..++ |.++. ...+|+.+.|.+. .++||-
T Consensus 244 ~~~a~~l~~~q~~~dG~W~~~ld~~~~~~~~~EsSatA~~ay~l~~g~~~g~l~~~Y~~~a~k~~~~l~~~~~~~~~dG~ 323 (373)
T 1nc5_A 244 QDMIKSICRYQDKETGLWYQIVDKGDRSDNWLESSGSCLYMYAIAKGINKGYLDRAYETTLLKAYQGLIQHKTETSEDGA 323 (373)
T ss_dssp HHHHHHHHTTSCTTTSCCBSBTTCTTSTTCCBCHHHHHHHHHHHHHHHHHTSSCGGGHHHHHHHHHHHHHHHEEECTTSC
T ss_pred HHHHHHHHHhcCCCCCceeeecCCCCCCCCCccccHHHHHHHHHHHHHHCCCCcHHHHHHHHHHHHHHHHhceeECCCCC
Confidence 5678899999997 898762 21211 1123333344433333 22221 2356788888773 578884
Q ss_pred C
Q 021286 167 F 167 (314)
Q Consensus 167 f 167 (314)
.
T Consensus 324 l 324 (373)
T 1nc5_A 324 F 324 (373)
T ss_dssp E
T ss_pred E
Confidence 4
Done!