Query 021288
Match_columns 314
No_of_seqs 222 out of 1468
Neff 5.5
Searched_HMMs 46136
Date Fri Mar 29 09:04:27 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021288.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/021288hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02594 phosphatidate cytidyl 100.0 4.8E-93 1E-97 682.1 34.3 314 1-314 25-342 (342)
2 KOG1440 CDP-diacylglycerol syn 100.0 9.7E-88 2.1E-92 651.9 27.0 303 1-310 124-431 (432)
3 PRK11624 cdsA CDP-diglyceride 100.0 1.3E-44 2.9E-49 342.6 20.0 132 98-271 149-281 (285)
4 COG0575 CdsA CDP-diglyceride s 100.0 1.4E-40 3.1E-45 311.5 19.1 132 97-271 130-262 (265)
5 PLN02953 phosphatidate cytidyl 100.0 2E-40 4.3E-45 322.6 20.6 134 98-273 266-399 (403)
6 PF01148 CTP_transf_1: Cytidyl 100.0 4.6E-40 9.9E-45 300.0 20.3 158 73-271 101-259 (259)
7 COG4589 Predicted CDP-diglycer 100.0 8.5E-38 1.8E-42 287.5 20.7 164 36-271 137-301 (303)
8 PRK04032 hypothetical protein; 99.9 8.7E-27 1.9E-31 203.7 10.3 102 120-269 22-124 (159)
9 PF01864 DUF46: Putative integ 99.6 1.9E-15 4E-20 134.6 11.7 127 99-267 7-139 (175)
10 KOG4453 Predicted ER membrane 97.5 0.00047 1E-08 64.1 8.6 50 109-160 165-214 (269)
11 COG0170 SEC59 Dolichol kinase 97.3 0.0012 2.6E-08 60.9 8.5 48 108-156 121-168 (216)
12 KOG2468 Dolichol kinase [Lipid 94.7 0.027 5.8E-07 57.2 3.4 42 112-155 421-462 (510)
13 COG1836 Predicted membrane pro 74.3 68 0.0015 30.6 12.0 47 109-155 129-184 (247)
14 PF01940 DUF92: Integral membr 65.0 1.2E+02 0.0027 28.3 13.5 52 105-156 111-171 (226)
15 PF01741 MscL: Large-conductan 59.7 35 0.00075 29.2 6.5 84 222-309 34-128 (128)
16 TIGR00297 conserved hypothetic 51.5 94 0.002 29.4 8.5 48 107-154 118-174 (237)
17 KOG1440 CDP-diacylglycerol syn 40.3 17 0.00038 37.0 1.9 44 103-146 270-313 (432)
18 PF06858 NOG1: Nucleolar GTP-b 38.9 25 0.00053 26.3 2.0 21 290-310 29-49 (58)
19 COG0004 AmtB Ammonia permease 38.7 41 0.00089 34.3 4.2 38 208-248 281-318 (409)
20 PRK10666 ammonium transporter; 38.5 20 0.00042 36.7 2.0 41 208-251 304-346 (428)
21 PF09150 Carot_N: Orange carot 36.5 45 0.00097 29.8 3.6 25 279-304 58-82 (159)
22 cd02572 PseudoU_synth_hDyskeri 35.3 22 0.00049 32.0 1.6 27 228-259 19-45 (182)
23 TIGR00836 amt ammonium transpo 34.1 15 0.00032 37.2 0.3 38 208-248 280-317 (403)
24 COG0575 CdsA CDP-diglyceride s 33.2 1.1E+02 0.0024 28.7 6.1 56 212-267 134-193 (265)
25 TIGR03644 marine_trans_1 proba 32.2 22 0.00048 36.0 1.2 37 208-248 294-330 (404)
26 PF04868 PDE6_gamma: Retinal c 30.9 30 0.00066 27.3 1.5 18 235-252 41-58 (83)
27 PRK00989 truB tRNA pseudouridi 28.9 33 0.00072 32.3 1.7 27 228-259 26-52 (230)
28 PF09720 Unstab_antitox: Putat 28.2 59 0.0013 23.1 2.5 21 289-309 1-21 (54)
29 PRK02868 hypothetical protein; 28.0 1.1E+02 0.0025 29.0 5.1 19 283-301 60-78 (245)
30 PF01509 TruB_N: TruB family p 27.8 20 0.00044 31.3 0.0 22 232-258 1-22 (149)
31 TIGR02574 stabl_TIGR02574 puta 27.3 62 0.0014 23.9 2.6 21 289-309 2-22 (63)
32 PRK04099 truB tRNA pseudouridi 27.0 36 0.00078 32.8 1.6 27 228-259 19-45 (273)
33 PF11283 DUF3084: Protein of u 26.4 40 0.00088 26.7 1.5 26 112-137 12-42 (79)
34 cd07357 HN_L-whirlin_R2_like S 25.5 1.1E+02 0.0024 24.3 3.8 45 267-312 27-71 (81)
35 PRK10236 hypothetical protein; 24.9 89 0.0019 29.6 3.7 29 279-307 118-146 (237)
36 PRK00020 truB tRNA pseudouridi 24.6 44 0.00095 31.7 1.7 26 229-259 28-53 (244)
37 PRK14122 tRNA pseudouridine sy 23.6 48 0.001 32.6 1.7 26 228-258 18-43 (312)
38 COG4956 Integral membrane prot 23.2 3.8E+02 0.0082 26.8 7.7 28 132-159 36-63 (356)
39 PF00909 Ammonium_transp: Ammo 22.5 2E+02 0.0043 28.8 5.9 38 208-248 275-312 (399)
40 TIGR00431 TruB tRNA pseudourid 21.7 54 0.0012 30.3 1.6 27 228-259 19-45 (209)
41 cd07347 harmonin_N_like N-term 21.6 2E+02 0.0044 22.6 4.6 44 265-310 25-68 (78)
42 PRK10847 hypothetical protein; 21.6 39 0.00084 30.9 0.7 24 107-130 79-102 (219)
43 cd00506 PseudoU_synth_TruB_lik 21.4 53 0.0012 30.3 1.5 27 228-259 17-43 (210)
44 PF11460 DUF3007: Protein of u 21.3 1E+02 0.0022 25.7 3.0 21 283-303 83-103 (104)
45 COG3140 Uncharacterized protei 21.1 1.1E+02 0.0024 22.8 2.8 20 289-308 7-26 (60)
46 cd07358 harmonin_N_like_1 Doma 21.0 1.3E+02 0.0028 23.8 3.3 46 265-312 25-70 (78)
47 COG0130 TruB Pseudouridine syn 20.9 54 0.0012 31.6 1.5 24 228-256 32-55 (271)
48 PRK14124 tRNA pseudouridine sy 20.3 60 0.0013 31.8 1.7 27 228-259 20-46 (308)
49 PF03701 UPF0181: Uncharacteri 20.2 1.3E+02 0.0028 22.0 2.9 20 289-308 7-26 (51)
No 1
>PLN02594 phosphatidate cytidylyltransferase
Probab=100.00 E-value=4.8e-93 Score=682.13 Aligned_cols=314 Identities=85% Similarity=1.463 Sum_probs=301.6
Q ss_pred CcchhhHHHHHHHHhHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHH
Q 021288 1 MLNWHFFFTAMLFVYGRILSQRLVNTVTSDKFLYQFVSSLIKYHMVICYFLYISGFVWFILTLKKKMYKYQFSQYAWTHM 80 (314)
Q Consensus 1 ~l~wy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~h~~i~~~ly~~~~v~fvlsL~~~~~~~~~~~~~~t~~ 80 (314)
++|||||++++||+|||++.+++++.+.+++.+..++.++++||+++||++|++|+++||++|+|+++++|+.+++||++
T Consensus 25 ~l~Wyf~~~~~~~~yg~~~~~~~~~~~~~~~~l~~~~~~~~~~h~~isf~ly~~gfv~FvlsL~k~~~k~qf~~~a~t~~ 104 (342)
T PLN02594 25 LLNWHFFFTAMFFVYGRFLKQQLVNTVTSDKFLYRLVSGLIKYHMAICYSLYIAGFVWFILTLKKGMYKYQFGQYAWTHM 104 (342)
T ss_pred hHHHHHHHHHHHHHhhHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHH
Confidence 58999999999999999999999999999998888888899999999999999999999999999999999999999999
Q ss_pred HHHHHHHhHHHHHHhhhhhHHHHHHHHHHHHhcchhHhHhhhccCCcCCCCCCCCCCchHHHHHHHHHHHHHHHHHHHhh
Q 021288 81 ILIVVFAQSSFTVASIFEGIFWFLLPASLIVINDIAAYIFGFFFGRTPLIKLSPKKTWEGFIGASVATITSAFVLANIMG 160 (314)
Q Consensus 81 ~ll~v~~~~~~~~~~~~~G~~w~ll~~~~v~~nD~~AY~~G~~fGk~kL~~iSPkKTwEGfiGG~i~t~i~~~~~~~~~~ 160 (314)
++++++.++++++.|+++|.+|+++|+.+||+||++||++||.|||||++++||||||||++||+++|++++.+++.+++
T Consensus 105 ~llyV~~~~~~ii~ni~~G~~w~~l~~~lV~~nDi~AY~~G~~fGk~kL~~iSPkKTwEGfiGg~i~T~i~~~~~~~~~~ 184 (342)
T PLN02594 105 ILIVVFTQSSFTVANIFEGIFWFLLPASLIVINDIAAYLFGFFFGRTPLIKLSPKKTWEGFIGASVTTLISAFYLANIMG 184 (342)
T ss_pred HHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHhHHHHHHHHHhcCCCCCccCCCCchhhhHHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hccccccCCCCCCCCccccCCCCCCCCcccCCCCCC----CccccccchhHHHHHHHHHHHHHhhhhhhHHHHHHhhcCC
Q 021288 161 RFQWLTCPRKDLATGWLHCDPGPLFKPESFPLPGWL----PWKEITILPVQWHALCLGLFASIIAPFGGFFASGFKRAFK 236 (314)
Q Consensus 161 ~~~~~~cp~~~~~~~~~~c~~~~~f~~~~~~~~~~~----~~~~~~~~~~~~~~l~l~~~~sl~a~~GDl~~S~iKR~~~ 236 (314)
+++|++||.++++.++++|||||+|++++|.+|.+. +..++++.|.++|++++|+++|++||+|||+||++||++|
T Consensus 185 ~~~~~~cp~~~~~~~~~~C~p~~~f~~~~~~~p~~~~~~~~~~~i~~~~~~~h~l~l~l~aSl~a~fGdlfaS~~KR~~~ 264 (342)
T PLN02594 185 KFQWLTCPRKDLSTGWLECDPDPLFKPETYPLPGWIPRWFPWKEVSVLPVQWHALSLGLFASIIAPFGGFFASGFKRAFK 264 (342)
T ss_pred ccccccCCccccccCcccCCCccccccccccCCccccccccccccccchHHHHHHHHHHHHHHHHHhhhHHHHHHHHccC
Confidence 999999999999989999999999999999999653 3345677788999999999999999999999999999999
Q ss_pred CCcCCCCCCCCcchhhhhhhhhHHHHHHHHHHHHhccCCCCCHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccCCC
Q 021288 237 IKDFGDSIPGHGGITDRMDCQMVMAVFAYIYHQSFIVPQSFRVEMILEQILTALTYEEQKALYMKLGEILQERLFGQS 314 (314)
Q Consensus 237 IKD~G~~iPGHGGilDR~Ds~l~~~~f~y~y~~~fi~~~~~~~~~~~~~~~~~l~~~~q~~l~~~l~~~~~~~~~~~~ 314 (314)
|||||+++|||||++||+||+++|+|++|+|+++||+.+++|++++++++.++|++|||+||++.|++++++||++.+
T Consensus 265 IKDfG~~IPGHGGilDRfDs~l~~~~f~y~y~~~fi~~~~~~~~~il~~i~~~l~~~~q~~l~~~l~~~l~~~g~~~~ 342 (342)
T PLN02594 265 IKDFGDSIPGHGGITDRMDCQMVMAVFAYIYYQSFIVPQSVSVGKLLDQILTLLTDEEQKELYVKLGQMLQERGLGLG 342 (342)
T ss_pred CCcccCccCCCccccccccHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCCCC
Confidence 999999999999999999999999999999999999999999999999998899999999999999999999998764
No 2
>KOG1440 consensus CDP-diacylglycerol synthase [Lipid transport and metabolism]
Probab=100.00 E-value=9.7e-88 Score=651.86 Aligned_cols=303 Identities=55% Similarity=1.060 Sum_probs=290.8
Q ss_pred CcchhhHHHHHHHHhHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHH
Q 021288 1 MLNWHFFFTAMLFVYGRILSQRLVNTVTSDKFLYQFVSSLIKYHMVICYFLYISGFVWFILTLKKKMYKYQFSQYAWTHM 80 (314)
Q Consensus 1 ~l~wy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~h~~i~~~ly~~~~v~fvlsL~~~~~~~~~~~~~~t~~ 80 (314)
+++|||+++++||+|||.+.+++...+.+++. +.++++||+++|+++|++|+++||++|+|+.|++||++++|||+
T Consensus 124 ~l~w~fl~t~~yf~yg~~~~~yf~~v~~~~~~----l~~LV~yh~fi~f~lYi~gf~~FV~sL~k~~yk~QFg~fawtH~ 199 (432)
T KOG1440|consen 124 LLNWYFLLTVNYFVYGEILVAYFAAVFIRDRF----LFFLVRYHRFICFALYLIGFVSFVLSLRKGIYKLQFGLFAWTHM 199 (432)
T ss_pred hhhhHHHHHHHHHHhHHHHHHHHHHHHhhhHH----HHHHHHhcccccHHHHHHHHHHHHHHhhhhhhHHHHHhHHHHHH
Confidence 47999999999999999999999999877554 45667799999999999999999999999999999999999999
Q ss_pred HHHHHHHhHHHHHHhhhhhHHHHHHHHHHHHhcchhHhHhhhccCCcCCCCCCCCCCchHHHHHHHHHHHHHHHHHHHhh
Q 021288 81 ILIVVFAQSSFTVASIFEGIFWFLLPASLIVINDIAAYIFGFFFGRTPLIKLSPKKTWEGFIGASVATITSAFVLANIMG 160 (314)
Q Consensus 81 ~ll~v~~~~~~~~~~~~~G~~w~ll~~~~v~~nD~~AY~~G~~fGk~kL~~iSPkKTwEGfiGG~i~t~i~~~~~~~~~~ 160 (314)
++++|+.|+++.+.|+++|++|+++|+.++++||++||.+|.+||||||+++||||||||||||.++|++.+.++++++.
T Consensus 200 sll~Vv~qs~l~i~N~feG~fWFl~P~~lvicnDi~AY~~Gf~fGktPLiklSPKKTwEGFiGg~~~tvv~~i~~s~vL~ 279 (432)
T KOG1440|consen 200 SLLLVVTQSHLVIQNLFEGLFWFLVPAGLVICNDIFAYLFGFFFGKTPLIKLSPKKTWEGFIGGTFGTVVFGILFSYVLG 279 (432)
T ss_pred HHHHHHHHHHHHHhcccchHHHHHHHhHhheeCchHHHHHhhhhcCCcccccCCCCccchhhchhHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hccccccCCCCCCCC-ccccCCCCCCCCcccCCCCC----CCccccccchhHHHHHHHHHHHHHhhhhhhHHHHHHhhcC
Q 021288 161 RFQWLTCPRKDLATG-WLHCDPGPLFKPESFPLPGW----LPWKEITILPVQWHALCLGLFASIIAPFGGFFASGFKRAF 235 (314)
Q Consensus 161 ~~~~~~cp~~~~~~~-~~~c~~~~~f~~~~~~~~~~----~~~~~~~~~~~~~~~l~l~~~~sl~a~~GDl~~S~iKR~~ 235 (314)
+++|++||.+|.+++ +++|||++.|.++.|.+|++ .++.++++.|+++|++.+++++|++||||||+||++||++
T Consensus 280 ~~~~~~cp~~d~~t~~~~~c~p~~~F~~~~y~lp~~i~~~i~~k~is~~p~~~Hsial~~faS~iaPFGGFfASgfKRaf 359 (432)
T KOG1440|consen 280 HYTFFTCPVKDFSTTPLLSCEPKPLFEPQTYGLPGVISITIRLKSISLPPFQFHSIALGLFASFIAPFGGFFASGFKRAF 359 (432)
T ss_pred cCeEEEecccccCCCCccccCcccccCcceecCCceeeeeccccccccchHHHHHHHHHHHHHhhccchhHHHHHhHHhh
Confidence 999999999999876 79999999999999999986 3557889999999999999999999999999999999999
Q ss_pred CCCcCCCCCCCCcchhhhhhhhhHHHHHHHHHHHHhccCCCCCHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcc
Q 021288 236 KIKDFGDSIPGHGGITDRMDCQMVMAVFAYIYHQSFIVPQSFRVEMILEQILTALTYEEQKALYMKLGEILQERL 310 (314)
Q Consensus 236 ~IKD~G~~iPGHGGilDR~Ds~l~~~~f~y~y~~~fi~~~~~~~~~~~~~~~~~l~~~~q~~l~~~l~~~~~~~~ 310 (314)
||||||+.||||||++||+|||++|+.|+|.|+++||+.+.+| +++++|++ |++|||++|+++|+++|++++
T Consensus 360 KiKDFG~~IPGHGGI~DR~DCQ~lma~Fay~Yi~SFI~~~~~s--~ll~qi~~-l~~~qq~~l~~~L~~~l~~~~ 431 (432)
T KOG1440|consen 360 KIKDFGDSIPGHGGITDRMDCQILMATFAYVYIQSFIRLPGVS--KLLDQILT-LTPEQQLNLFEKLQRRLSSKG 431 (432)
T ss_pred cCCcccccCCCCCCcchhhHHHHHHHHHHHHHHHHHhccCCHH--HHHHHHHh-CCHHHHHHHHHHHHHHHHhhc
Confidence 9999999999999999999999999999999999999988877 99999998 999999999999999999876
No 3
>PRK11624 cdsA CDP-diglyceride synthase; Provisional
Probab=100.00 E-value=1.3e-44 Score=342.58 Aligned_cols=132 Identities=33% Similarity=0.554 Sum_probs=115.6
Q ss_pred hhHHHHHHHHHHHHhcchhHhHhhhccCCcCCC-CCCCCCCchHHHHHHHHHHHHHHHHHHHhhhccccccCCCCCCCCc
Q 021288 98 EGIFWFLLPASLIVINDIAAYIFGFFFGRTPLI-KLSPKKTWEGFIGASVATITSAFVLANIMGRFQWLTCPRKDLATGW 176 (314)
Q Consensus 98 ~G~~w~ll~~~~v~~nD~~AY~~G~~fGk~kL~-~iSPkKTwEGfiGG~i~t~i~~~~~~~~~~~~~~~~cp~~~~~~~~ 176 (314)
+|..|.++.+.+||+||++||++||.|||||++ ++||||||||++||++++++.+.+.+.+.. .
T Consensus 149 ~G~~~vl~l~~~vw~sDt~AYf~Gr~fGk~KL~P~ISPkKTwEG~iGg~~~~~~~~~~~~~~~~-~-------------- 213 (285)
T PRK11624 149 SGAWWLLYVMILVWGADSGAYMFGKLFGKHKLAPKVSPGKTWEGFIGGLATAAVISWLFGMWAP-L-------------- 213 (285)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCcCCCCCchhhhHHHHHHHHHHHHHHHHHHc-c--------------
Confidence 488899999999999999999999999999999 899999999999999999998888764321 0
Q ss_pred cccCCCCCCCCcccCCCCCCCccccccchhHHHHHHHHHHHHHhhhhhhHHHHHHhhcCCCCcCCCCCCCCcchhhhhhh
Q 021288 177 LHCDPGPLFKPESFPLPGWLPWKEITILPVQWHALCLGLFASIIAPFGGFFASGFKRAFKIKDFGDSIPGHGGITDRMDC 256 (314)
Q Consensus 177 ~~c~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~sl~a~~GDl~~S~iKR~~~IKD~G~~iPGHGGilDR~Ds 256 (314)
+ .. .++.+++++.+++.|++||++||++||++||||+|+++|||||++||+||
T Consensus 214 -----------------------~--~~--~~~~~~~~~~~~~~~~~GDL~ES~lKR~~gVKDSG~llPGHGGiLDR~DS 266 (285)
T PRK11624 214 -----------------------D--VA--PVTLLICSIVAALASVLGDLTESMFKREAGIKDSGHLIPGHGGILDRIDS 266 (285)
T ss_pred -----------------------c--cc--HHHHHHHHHHHHHHHHHhHHHHHHHhhccCCCCCcCcCCCcCcchhhHhH
Confidence 0 00 14567789999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHh
Q 021288 257 QMVMAVFAYIYHQSF 271 (314)
Q Consensus 257 ~l~~~~f~y~y~~~f 271 (314)
+++++|+.|++....
T Consensus 267 Llfa~P~~~~~~~~~ 281 (285)
T PRK11624 267 LTAAVPVFACLLLLV 281 (285)
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999987765443
No 4
>COG0575 CdsA CDP-diglyceride synthetase [Lipid metabolism]
Probab=100.00 E-value=1.4e-40 Score=311.49 Aligned_cols=132 Identities=38% Similarity=0.688 Sum_probs=116.4
Q ss_pred hhhHHHHHHHHHHHHhcchhHhHhhhccCCcCCC-CCCCCCCchHHHHHHHHHHHHHHHHHHHhhhccccccCCCCCCCC
Q 021288 97 FEGIFWFLLPASLIVINDIAAYIFGFFFGRTPLI-KLSPKKTWEGFIGASVATITSAFVLANIMGRFQWLTCPRKDLATG 175 (314)
Q Consensus 97 ~~G~~w~ll~~~~v~~nD~~AY~~G~~fGk~kL~-~iSPkKTwEGfiGG~i~t~i~~~~~~~~~~~~~~~~cp~~~~~~~ 175 (314)
++|..|.+++..+||++|++||++||+|||||+. ++||||||||++||++++++++.......+.
T Consensus 130 ~~g~~~~l~l~~~vw~~Di~Ayf~Gr~fGk~kl~p~iSP~KT~eGfigG~~~~~~v~~~~~~~~~~-------------- 195 (265)
T COG0575 130 YSGLILLLLLFLGVWAGDIGAYFVGRRFGKHKLAPKISPKKTWEGFIGGALGAVLVAVLVIFLLSS-------------- 195 (265)
T ss_pred hhhHHHHHHHHHHHHHHhhhHHHHHHHcCCCCCCCcCCCCCchHHhHHHHHHHHHHHHHHHHHHhh--------------
Confidence 5799999999999999999999999999999998 7999999999999999999888776654320
Q ss_pred ccccCCCCCCCCcccCCCCCCCccccccchhHHHHHHHHHHHHHhhhhhhHHHHHHhhcCCCCcCCCCCCCCcchhhhhh
Q 021288 176 WLHCDPGPLFKPESFPLPGWLPWKEITILPVQWHALCLGLFASIIAPFGGFFASGFKRAFKIKDFGDSIPGHGGITDRMD 255 (314)
Q Consensus 176 ~~~c~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~sl~a~~GDl~~S~iKR~~~IKD~G~~iPGHGGilDR~D 255 (314)
..+..++.+.+++++++++++||++||.+||++|+||+|+++|||||++||+|
T Consensus 196 ---------------------------~~~~~~~~~~l~~~~~l~~~lGDL~eS~iKR~~gvKDsg~liPGHGGilDR~D 248 (265)
T COG0575 196 ---------------------------LILNIWTLLILGLLLVLTSQLGDLFESYIKRLLGIKDSGWLIPGHGGILDRFD 248 (265)
T ss_pred ---------------------------hhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHccCCCCcCCCCCCcCcccccHh
Confidence 00123677889999999999999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHHHh
Q 021288 256 CQMVMAVFAYIYHQSF 271 (314)
Q Consensus 256 s~l~~~~f~y~y~~~f 271 (314)
|++++ ++|++...+
T Consensus 249 sl~~~--~~~~~~~~~ 262 (265)
T COG0575 249 SLLFV--AVYLFLLLF 262 (265)
T ss_pred hHHHH--HHHHHHHHH
Confidence 99999 666666544
No 5
>PLN02953 phosphatidate cytidylyltransferase
Probab=100.00 E-value=2e-40 Score=322.57 Aligned_cols=134 Identities=34% Similarity=0.600 Sum_probs=120.4
Q ss_pred hhHHHHHHHHHHHHhcchhHhHhhhccCCcCCCCCCCCCCchHHHHHHHHHHHHHHHHHHHhhhccccccCCCCCCCCcc
Q 021288 98 EGIFWFLLPASLIVINDIAAYIFGFFFGRTPLIKLSPKKTWEGFIGASVATITSAFVLANIMGRFQWLTCPRKDLATGWL 177 (314)
Q Consensus 98 ~G~~w~ll~~~~v~~nD~~AY~~G~~fGk~kL~~iSPkKTwEGfiGG~i~t~i~~~~~~~~~~~~~~~~cp~~~~~~~~~ 177 (314)
.|..|+++.+.++|+||++||++||.|||||+.++||||||||++||++++++++.+.+.++. | |
T Consensus 266 ~Gl~~~l~~~~~vw~~Di~AY~~G~~fGk~kl~~ISPkKTwEG~iGGil~~vlv~~l~~~~l~---~---~--------- 330 (403)
T PLN02953 266 VGLVATLISFSGVIATDTFAFLGGKAFGRTPLTSISPKKTWEGTFVGLVGCIAITILLSKSLS---W---P--------- 330 (403)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCcCCCCCeeeeehhHHHHHHHHHHHHHHHHc---c---c---------
Confidence 488999999999999999999999999999999999999999999999999998887765431 1 0
Q ss_pred ccCCCCCCCCcccCCCCCCCccccccchhHHHHHHHHHHHHHhhhhhhHHHHHHhhcCCCCcCCCCCCCCcchhhhhhhh
Q 021288 178 HCDPGPLFKPESFPLPGWLPWKEITILPVQWHALCLGLFASIIAPFGGFFASGFKRAFKIKDFGDSIPGHGGITDRMDCQ 257 (314)
Q Consensus 178 ~c~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~sl~a~~GDl~~S~iKR~~~IKD~G~~iPGHGGilDR~Ds~ 257 (314)
...++++++++++++.|++||++||++||++||||+|+++|||||++||+||+
T Consensus 331 ---------------------------~~~~~~i~lg~li~~~~~~GDL~eS~iKR~~gVKDsG~liPGHGGiLDR~DSl 383 (403)
T PLN02953 331 ---------------------------QSLFSSIAFGFLNFFGSVFGDLTESMIKRDAGVKDSGSLIPGHGGILDRVDSY 383 (403)
T ss_pred ---------------------------hHHHHHHHHHHHHHHHHHhhHHHHHHHhHccCCCCccccCCCCCcchhhHhHH
Confidence 01246788999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHhcc
Q 021288 258 MVMAVFAYIYHQSFIV 273 (314)
Q Consensus 258 l~~~~f~y~y~~~fi~ 273 (314)
++++|++|++.++.+.
T Consensus 384 lfaaPv~y~~~~~~~~ 399 (403)
T PLN02953 384 IFTGALAYSFIKTSLK 399 (403)
T ss_pred HHHHHHHHHHHHHhcc
Confidence 9999999999887663
No 6
>PF01148 CTP_transf_1: Cytidylyltransferase family; InterPro: IPR000374 Phosphatidate cytidylyltransferase (2.7.7.41 from EC) [, , ] (also known as CDP- diacylglycerol synthase) (CDS) is the enzyme that catalyzes the synthesis of CDP-diacylglycerol from CTP and phosphatidate (PA): CTP + phosphatidate = diphosphate + CDP-diacylglycerol CDP-diacylglycerol is an important branch point intermediate in both prokaryotic and eukaryotic organisms. CDS is a membrane-bound enzyme.; GO: 0016772 transferase activity, transferring phosphorus-containing groups, 0016020 membrane
Probab=100.00 E-value=4.6e-40 Score=299.97 Aligned_cols=158 Identities=35% Similarity=0.507 Sum_probs=128.8
Q ss_pred hhHHHHHHHHHHHHHh-HHHHHHhhhhhHHHHHHHHHHHHhcchhHhHhhhccCCcCCCCCCCCCCchHHHHHHHHHHHH
Q 021288 73 SQYAWTHMILIVVFAQ-SSFTVASIFEGIFWFLLPASLIVINDIAAYIFGFFFGRTPLIKLSPKKTWEGFIGASVATITS 151 (314)
Q Consensus 73 ~~~~~t~~~ll~v~~~-~~~~~~~~~~G~~w~ll~~~~v~~nD~~AY~~G~~fGk~kL~~iSPkKTwEGfiGG~i~t~i~ 151 (314)
.+...+.+.+.++... ......+...+..+.+.++.+++.+|++||++||+||||+..++||||||||++||++++.+.
T Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~gD~~A~l~G~~fGk~~~~~~sp~KT~EGsi~~~i~~~i~ 180 (259)
T PF01148_consen 101 RRIISTLFGLIYFGIFLLLLLIFFWFFGPPLALIGILILGIGDSFAYLVGRRFGKHLAPKISPKKTWEGSIAGFISSFII 180 (259)
T ss_pred HHHHHHHHHHHHHhHHHHHHHhhhhccchHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCCCCCCCCHHHHhHHHHHHHHH
Confidence 3444444444333222 233445566788888999999999999999999999999434899999999999999999998
Q ss_pred HHHHHHHhhhccccccCCCCCCCCccccCCCCCCCCcccCCCCCCCccccccchhHHHHHHHHHHHHHhhhhhhHHHHHH
Q 021288 152 AFVLANIMGRFQWLTCPRKDLATGWLHCDPGPLFKPESFPLPGWLPWKEITILPVQWHALCLGLFASIIAPFGGFFASGF 231 (314)
Q Consensus 152 ~~~~~~~~~~~~~~~cp~~~~~~~~~~c~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~sl~a~~GDl~~S~i 231 (314)
+.+...+.... . ...++.+++++++++++++||++||.+
T Consensus 181 ~~~~~~~~~~~-------------------------------------~----~~~~~~~~~~~~~~i~~~~gdl~~S~~ 219 (259)
T PF01148_consen 181 SFLLLYYLSSF-------------------------------------F----LSWWQAILISLLASIVEAFGDLFESAI 219 (259)
T ss_pred HHHHHHHhcch-------------------------------------h----hHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88776553210 0 123678899999999999999999999
Q ss_pred hhcCCCCcCCCCCCCCcchhhhhhhhhHHHHHHHHHHHHh
Q 021288 232 KRAFKIKDFGDSIPGHGGITDRMDCQMVMAVFAYIYHQSF 271 (314)
Q Consensus 232 KR~~~IKD~G~~iPGHGGilDR~Ds~l~~~~f~y~y~~~f 271 (314)
||++||||+|+++|||||++||+||+++++|+.|++++.|
T Consensus 220 KR~~~iKD~g~lipghGg~lDr~d~~l~~~~~~~~~~~~f 259 (259)
T PF01148_consen 220 KRDAGIKDSGNLIPGHGGILDRFDSLLFAAPVFYILLKIF 259 (259)
T ss_pred HHhhhcccccccccCcCCcccchHhHHHHHHHHHHHHHHC
Confidence 9999999999999999999999999999999999999876
No 7
>COG4589 Predicted CDP-diglyceride synthetase/phosphatidate cytidylyltransferase [General function prediction only]
Probab=100.00 E-value=8.5e-38 Score=287.48 Aligned_cols=164 Identities=27% Similarity=0.484 Sum_probs=130.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHhHHHHHHhhhhhHHHHHHHHHHHHhcch
Q 021288 36 FVSSLIKYHMVICYFLYISGFVWFILTLKKKMYKYQFSQYAWTHMILIVVFAQSSFTVASIFEGIFWFLLPASLIVINDI 115 (314)
Q Consensus 36 ~l~~~~~~h~~i~~~ly~~~~v~fvlsL~~~~~~~~~~~~~~t~~~ll~v~~~~~~~~~~~~~G~~w~ll~~~~v~~nD~ 115 (314)
.+++.-+.||..+...||++++.++++|.-.+.+ .|....++.+.++..||+
T Consensus 137 Fl~~~s~i~wg~mltvfcish~~~lltL~~~~~~----------------------------~~~ll~iflli~~q~nDV 188 (303)
T COG4589 137 FLHRVSAIQWGWMLTVFCISHAAYLLTLDITNFQ----------------------------GGALLVIFLLILTELNDV 188 (303)
T ss_pred HHHHhHHHHHHHHHHHHHHHhhHHHhhCCCCCcC----------------------------ccchHHHHHHHHHHHHHH
Confidence 4455555566666666666666666655433221 122233344467889999
Q ss_pred hHhHhhhccCCcCCC-CCCCCCCchHHHHHHHHHHHHHHHHHHHhhhccccccCCCCCCCCccccCCCCCCCCcccCCCC
Q 021288 116 AAYIFGFFFGRTPLI-KLSPKKTWEGFIGASVATITSAFVLANIMGRFQWLTCPRKDLATGWLHCDPGPLFKPESFPLPG 194 (314)
Q Consensus 116 ~AY~~G~~fGk~kL~-~iSPkKTwEGfiGG~i~t~i~~~~~~~~~~~~~~~~cp~~~~~~~~~~c~~~~~f~~~~~~~~~ 194 (314)
++|.+||.|||||+. ++||||||||++||.+.+++.+.++.+ +++.
T Consensus 189 ~QYvwGk~fGk~Ki~P~vSPnKTveGl~GGilt~~~~~~~l~~-lTp~-------------------------------- 235 (303)
T COG4589 189 AQYVWGKSFGKRKIVPKVSPNKTVEGLIGGILTTMIASAILGL-LTPL-------------------------------- 235 (303)
T ss_pred HHHHHhhhcCCcccCCCcCCcchHHHHhhhHHHHHHHHHHHHH-hCCC--------------------------------
Confidence 999999999999998 899999999999999999998888763 2211
Q ss_pred CCCccccccchhHHHHHHHHHHHHHhhhhhhHHHHHHhhcCCCCcCCCCCCCCcchhhhhhhhhHHHHHHHHHHHHh
Q 021288 195 WLPWKEITILPVQWHALCLGLFASIIAPFGGFFASGFKRAFKIKDFGDSIPGHGGITDRMDCQMVMAVFAYIYHQSF 271 (314)
Q Consensus 195 ~~~~~~~~~~~~~~~~l~l~~~~sl~a~~GDl~~S~iKR~~~IKD~G~~iPGHGGilDR~Ds~l~~~~f~y~y~~~f 271 (314)
...|+++.|+...+.|.+||++.|++||+.|+||+|+++|||||++||+||++++||..+.+.+.+
T Consensus 236 -----------~~lqa~~~~~~I~l~GF~GdlvmSaiKRd~gvKD~G~li~GHGGiLDR~DSL~FtAPiffh~~ry~ 301 (303)
T COG4589 236 -----------NTLQALLAGLLIGLSGFCGDLVMSAIKRDVGVKDSGKLLPGHGGILDRVDSLIFTAPIFFHFIRYC 301 (303)
T ss_pred -----------cHHHHHHHHHHHHHHHhhhHHHHHHHHhhcCCCcccccCCCCccHHHHHHHHHHhhhHHHHHHHHh
Confidence 025788999999999999999999999999999999999999999999999999999988877765
No 8
>PRK04032 hypothetical protein; Provisional
Probab=99.94 E-value=8.7e-27 Score=203.65 Aligned_cols=102 Identities=25% Similarity=0.397 Sum_probs=86.2
Q ss_pred hhhcc-CCcCCCCCCCCCCchHHHHHHHHHHHHHHHHHHHhhhccccccCCCCCCCCccccCCCCCCCCcccCCCCCCCc
Q 021288 120 FGFFF-GRTPLIKLSPKKTWEGFIGASVATITSAFVLANIMGRFQWLTCPRKDLATGWLHCDPGPLFKPESFPLPGWLPW 198 (314)
Q Consensus 120 ~G~~f-Gk~kL~~iSPkKTwEGfiGG~i~t~i~~~~~~~~~~~~~~~~cp~~~~~~~~~~c~~~~~f~~~~~~~~~~~~~ 198 (314)
.||+| ++||+ +||||||||++||++++++.+.+++.+.... .
T Consensus 22 ~g~~~~dg~~i--iSP~KTwEG~iGGv~~~~l~~~~~~~~~~~~----------------------------------~- 64 (159)
T PRK04032 22 FGKTFVDGRRI--LGDGKTWRGLIGGILFGTLVGLIQNLLVPAY----------------------------------I- 64 (159)
T ss_pred CCCcCCCCCee--CCCCCcHHHhHHHHHHHHHHHHHHHHHHccc----------------------------------h-
Confidence 46777 66777 9999999999999999999988877542100 0
Q ss_pred cccccchhHHHHHHHHHHHHHhhhhhhHHHHHHhhcCCCCcCCCCCCCCcchhhhhhhhhHHHHHHHHHHH
Q 021288 199 KEITILPVQWHALCLGLFASIIAPFGGFFASGFKRAFKIKDFGDSIPGHGGITDRMDCQMVMAVFAYIYHQ 269 (314)
Q Consensus 199 ~~~~~~~~~~~~l~l~~~~sl~a~~GDl~~S~iKR~~~IKD~G~~iPGHGGilDR~Ds~l~~~~f~y~y~~ 269 (314)
. ..++++++++.+++.|++||++||++||++|+|| |+.+| ++||+||+++++|++|++..
T Consensus 65 -----~-~~~~~~~~g~li~v~~~~GDL~eS~iKR~~gVKD-g~~iP----iLDRiDsll~a~p~~~l~~~ 124 (159)
T PRK04032 65 -----G-ALGVAIILAFLLSFGALLGDMLGSFIKRRLGLER-GAPAP----LLDQLDFVVGALLFAYLVAP 124 (159)
T ss_pred -----h-HHHHHHHHHHHHHHHHHHhhHHHHHHhhccCCCC-cCccc----chhhhHHHHHHHHHHHHHHh
Confidence 0 1246788999999999999999999999999999 99998 99999999999999999876
No 9
>PF01864 DUF46: Putative integral membrane protein DUF46; InterPro: IPR002726 This archaebacterial protein has no known function. It contains several predicted transmembrane regions, suggesting it is an integral membrane protein.
Probab=99.63 E-value=1.9e-15 Score=134.61 Aligned_cols=127 Identities=28% Similarity=0.425 Sum_probs=94.0
Q ss_pred hHHHHHHHHHHHHhcchhHhHhhhc---cCCcCCC-C--CCCCCCchHHHHHHHHHHHHHHHHHHHhhhccccccCCCCC
Q 021288 99 GIFWFLLPASLIVINDIAAYIFGFF---FGRTPLI-K--LSPKKTWEGFIGASVATITSAFVLANIMGRFQWLTCPRKDL 172 (314)
Q Consensus 99 G~~w~ll~~~~v~~nD~~AY~~G~~---fGk~kL~-~--iSPkKTwEGfiGG~i~t~i~~~~~~~~~~~~~~~~cp~~~~ 172 (314)
...|+++|+. .+|-+..-+.|.. +||+-.. | +.++|||||+++|.+++++++.+...+.. . +..
T Consensus 7 ~~~~~~lPay--~an~~a~l~gg~~PiD~G~~~~DGrRilGdgKTwrG~i~gvl~g~l~g~i~~~l~~-~-------~~~ 76 (175)
T PF01864_consen 7 YALWLMLPAY--VANGSAVLFGGGRPIDFGKTFRDGRRILGDGKTWRGFIGGVLAGTLVGIIQGLLLP-L-------SIF 76 (175)
T ss_pred HHHHHHhHHH--hcCchHHHhCCCCcccCCCccCCCCEecCCCCeEEeeeHHHHHHHHHHHHHHHHhh-h-------ccc
Confidence 4679999988 5777777665543 4554333 2 89999999999999999999988765421 0 000
Q ss_pred CCCccccCCCCCCCCcccCCCCCCCccccccchhHHHHHHHHHHHHHhhhhhhHHHHHHhhcCCCCcCCCCCCCCcchhh
Q 021288 173 ATGWLHCDPGPLFKPESFPLPGWLPWKEITILPVQWHALCLGLFASIIAPFGGFFASGFKRAFKIKDFGDSIPGHGGITD 252 (314)
Q Consensus 173 ~~~~~~c~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~sl~a~~GDl~~S~iKR~~~IKD~G~~iPGHGGilD 252 (314)
. + .......+.+..++..++.|..||+..|.+||+.|+|. |...| ++|
T Consensus 77 ----------~--------~---------~~~~~~~~~~~~g~ll~~gamlGDl~~SFIKRRlgi~~-G~~ap----~lD 124 (175)
T PF01864_consen 77 ----------A--------L---------YFYGSLFFNLLLGFLLGLGAMLGDLPGSFIKRRLGIPR-GAPAP----GLD 124 (175)
T ss_pred ----------c--------c---------ccccchHHHHHHHHHHHHHHHHhHHHHHHHHHhcCCCC-CCcCc----cch
Confidence 0 0 00011235577899999999999999999999999997 66677 699
Q ss_pred hhhhhhHHHHHHHHH
Q 021288 253 RMDCQMVMAVFAYIY 267 (314)
Q Consensus 253 R~Ds~l~~~~f~y~y 267 (314)
++|+.+.+..+.+.+
T Consensus 125 Qldf~lgall~~~~~ 139 (175)
T PF01864_consen 125 QLDFVLGALLLLYLF 139 (175)
T ss_pred hHHHHHHHHHHHHHH
Confidence 999999998888774
No 10
>KOG4453 consensus Predicted ER membrane protein [Function unknown]
Probab=97.50 E-value=0.00047 Score=64.09 Aligned_cols=50 Identities=28% Similarity=0.257 Sum_probs=43.5
Q ss_pred HHHhcchhHhHhhhccCCcCCCCCCCCCCchHHHHHHHHHHHHHHHHHHHhh
Q 021288 109 LIVINDIAAYIFGFFFGRTPLIKLSPKKTWEGFIGASVATITSAFVLANIMG 160 (314)
Q Consensus 109 ~v~~nD~~AY~~G~~fGk~kL~~iSPkKTwEGfiGG~i~t~i~~~~~~~~~~ 160 (314)
+.|+ |+.|-.+||+||+.+. ++.|||+|.|.||++.++++.++++.+++.
T Consensus 165 lswc-Dt~AdtvGRKfG~~tp-k~aknKSlAGSIgaft~Gvf~c~vy~gyf~ 214 (269)
T KOG4453|consen 165 LSWC-DTIADTVGRKFGSTTP-KYAKNKSLAGSIGAFTFGVFICIVYLGYFS 214 (269)
T ss_pred HHHh-hhHHHHHhhhccccCC-CcCCCccccchHHHHHHHHHHHHHHHHHHh
Confidence 4455 9999999999999877 589999999999999999998888766654
No 11
>COG0170 SEC59 Dolichol kinase [Lipid metabolism]
Probab=97.28 E-value=0.0012 Score=60.86 Aligned_cols=48 Identities=27% Similarity=0.316 Sum_probs=40.1
Q ss_pred HHHHhcchhHhHhhhccCCcCCCCCCCCCCchHHHHHHHHHHHHHHHHH
Q 021288 108 SLIVINDIAAYIFGFFFGRTPLIKLSPKKTWEGFIGASVATITSAFVLA 156 (314)
Q Consensus 108 ~~v~~nD~~AY~~G~~fGk~kL~~iSPkKTwEGfiGG~i~t~i~~~~~~ 156 (314)
.+....|..|-++|+.+||||. +.+++||+||.+.+++++.++..++.
T Consensus 121 ~~l~~GD~lAsiiG~~~G~~~~-~~~~~KSleGSla~fi~~~l~~~~~~ 168 (216)
T COG0170 121 LVLALGDGLASIIGKRYGRHKR-ILGNGKSLEGSLAFFIASFLVLLVLY 168 (216)
T ss_pred HHHHHhhHHHHHhCcccCcccc-ccCCCCchhhhHHHHHHHHHHHHHHH
Confidence 3445789999999999999933 48999999999999999988776443
No 12
>KOG2468 consensus Dolichol kinase [Lipid transport and metabolism]
Probab=94.70 E-value=0.027 Score=57.20 Aligned_cols=42 Identities=33% Similarity=0.418 Sum_probs=36.7
Q ss_pred hcchhHhHhhhccCCcCCCCCCCCCCchHHHHHHHHHHHHHHHH
Q 021288 112 INDIAAYIFGFFFGRTPLIKLSPKKTWEGFIGASVATITSAFVL 155 (314)
Q Consensus 112 ~nD~~AY~~G~~fGk~kL~~iSPkKTwEGfiGG~i~t~i~~~~~ 155 (314)
.-|++|-++|+++||+|-.+- |||.||.+.++++..++.+++
T Consensus 421 iGDTmASiiG~r~G~~RW~~T--kKTlEGT~Afivs~~iv~~ll 462 (510)
T KOG2468|consen 421 IGDTMASIIGKRYGRIRWSGT--KKTLEGTLAFIVSSFIVCLLL 462 (510)
T ss_pred cchHHHHHHhhhhcceecCCC--cceeehhhHHHHHHHHHHHHH
Confidence 679999999999999999854 999999999999887766554
No 13
>COG1836 Predicted membrane protein [Function unknown]
Probab=74.27 E-value=68 Score=30.56 Aligned_cols=47 Identities=21% Similarity=0.299 Sum_probs=35.5
Q ss_pred HHHhcchhHhHhhhccCCcCC-C----CCCC----CCCchHHHHHHHHHHHHHHHH
Q 021288 109 LIVINDIAAYIFGFFFGRTPL-I----KLSP----KKTWEGFIGASVATITSAFVL 155 (314)
Q Consensus 109 ~v~~nD~~AY~~G~~fGk~kL-~----~iSP----kKTwEGfiGG~i~t~i~~~~~ 155 (314)
.+...||+|-=.|+..||+|. + |+.| .=|++|-+.|++++.+.+.+-
T Consensus 129 Ata~aDT~ASEiG~~~~~~p~lITtfkrV~~Gt~GaVS~~GelAav~Ga~iIal~~ 184 (247)
T COG1836 129 ATANADTLASEIGKAYGKRPRLITTFKRVEPGTSGAVSLVGELAAVAGAFIIALLS 184 (247)
T ss_pred HHHhhhHHHHHHhHhhCCCeEEEEeeeEcCCCCCCccchhhhHHHHHHHHHHHHHH
Confidence 355779999999999999764 2 3444 358999999988888776543
No 14
>PF01940 DUF92: Integral membrane protein DUF92; InterPro: IPR002794 Many members of this family have no known function and are predicted to be integral membrane proteins.; GO: 0016021 integral to membrane
Probab=64.98 E-value=1.2e+02 Score=28.33 Aligned_cols=52 Identities=17% Similarity=0.179 Sum_probs=38.2
Q ss_pred HHHHHHHhcchhHhHhhhccCCcCCC-----CCCC----CCCchHHHHHHHHHHHHHHHHH
Q 021288 105 LPASLIVINDIAAYIFGFFFGRTPLI-----KLSP----KKTWEGFIGASVATITSAFVLA 156 (314)
Q Consensus 105 l~~~~v~~nD~~AY~~G~~fGk~kL~-----~iSP----kKTwEGfiGG~i~t~i~~~~~~ 156 (314)
+-...+...||.|-=.|...+++|.. ++.| .=|++|.+.|+.++.+++....
T Consensus 111 ~~s~A~a~aDTwASEiG~ls~~~P~lItt~k~V~~Gt~GgVS~lGt~as~~Ga~~Ia~~~~ 171 (226)
T PF01940_consen 111 LGSIAAANADTWASEIGVLSKGPPRLITTFKRVPPGTSGGVSLLGTLASLAGALLIALVAF 171 (226)
T ss_pred HHHHHHHhhhHHHHhhhhhcCCCCeEeeCCcCCCCCCCCeechHHHHHHHHHHHHHHHHHH
Confidence 33445567899999999999887652 2333 3489999999999888777654
No 15
>PF01741 MscL: Large-conductance mechanosensitive channel, MscL; InterPro: IPR001185 Mechanosensitive ion channels (MscL) play a critical role in transducing physical stresses at the cell membrane into an electrochemical response. MscL is a protein which forms a channel organised as a homopentamer, with each subunit containing two transmembrane regions []. Prokaryotes harbor a large-conductance mechanosensitive channel (gene mscL) that opens in response to stretch forces in the membrane lipid bilayer and may participate in the regulation of osmotic pressure changes within the cell [].; GO: 0005216 ion channel activity, 0006810 transport, 0016021 integral to membrane; PDB: 3HZQ_A 2OAR_A.
Probab=59.69 E-value=35 Score=29.20 Aligned_cols=84 Identities=13% Similarity=0.186 Sum_probs=39.2
Q ss_pred hhhhHHHHHHhhcCCCCcCCC---CCCCCcc--------hhhhhhhhhHHHHHHHHHHHHhccCCCCCHHHHHHHHHHcC
Q 021288 222 PFGGFFASGFKRAFKIKDFGD---SIPGHGG--------ITDRMDCQMVMAVFAYIYHQSFIVPQSFRVEMILEQILTAL 290 (314)
Q Consensus 222 ~~GDl~~S~iKR~~~IKD~G~---~iPGHGG--------ilDR~Ds~l~~~~f~y~y~~~fi~~~~~~~~~~~~~~~~~l 290 (314)
...|++...+--..|-.|+.+ .++|++| +++.+=+.++++.+.|+..+.+=+-+....+. . .. .=
T Consensus 34 lV~dii~Pli~~~~g~~~~~~~~~~~~g~~~~~~i~yG~Fl~a~I~FlIiA~vvFlivk~~nk~~~~~~~~--~-~~-~~ 109 (128)
T PF01741_consen 34 LVNDIIMPLIGLLFGGPDFSDLFIVLSGPAGAVVIPYGAFLNALINFLIIAFVVFLIVKPINKLKKKEEKE--E-AE-AP 109 (128)
T ss_dssp HHHHCHHHHHHHSCS-S--EE----TTS-SS-EEE-HCHHHHHHHHHHHHHHHHHHCHHHHHHCHHTT-S--------H-
T ss_pred HHHHHHHHHHHHhcCCCCcccceeeeeccCCcceeeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcc--c-cC-CC
Confidence 344555555555456556554 4456544 44444444455555555444332211111111 1 00 12
Q ss_pred CHHHHHHHHHHHHHHHHhc
Q 021288 291 TYEEQKALYMKLGEILQER 309 (314)
Q Consensus 291 ~~~~q~~l~~~l~~~~~~~ 309 (314)
..+++.++++++++.|.+|
T Consensus 110 ~~~~~~~ll~eIrdlL~~q 128 (128)
T PF01741_consen 110 APKTCEELLTEIRDLLKKQ 128 (128)
T ss_dssp -HHHHHHHHHHHHHHHHH-
T ss_pred CCCchHHHHHHHHHHHhcC
Confidence 2568999999999999875
No 16
>TIGR00297 conserved hypothetical protein TIGR00297.
Probab=51.47 E-value=94 Score=29.41 Aligned_cols=48 Identities=21% Similarity=0.392 Sum_probs=35.6
Q ss_pred HHHHHhcchhHhHhhhccCCcCC-C----CCCC----CCCchHHHHHHHHHHHHHHH
Q 021288 107 ASLIVINDIAAYIFGFFFGRTPL-I----KLSP----KKTWEGFIGASVATITSAFV 154 (314)
Q Consensus 107 ~~~v~~nD~~AY~~G~~fGk~kL-~----~iSP----kKTwEGfiGG~i~t~i~~~~ 154 (314)
.......||.|-=.|+..+|+|. + ++.| .=|+||.+.+++++.+++..
T Consensus 118 s~A~a~aDT~ASEiG~ls~~~p~lItt~k~V~~GT~GgVS~~Gt~As~~Ga~~I~~~ 174 (237)
T TIGR00297 118 SVATALSDTMASEIGKAYGKNPRLITTLQRVEPGTDGAISVEGTLAGFAGALAIALL 174 (237)
T ss_pred HHHHHHcchHHHhhhhccCCCCeEeecCccCCCCCCCcccHHHHHHHHHHHHHHHHH
Confidence 34456789999999999998663 2 2333 45889999999988887743
No 17
>KOG1440 consensus CDP-diacylglycerol synthase [Lipid transport and metabolism]
Probab=40.31 E-value=17 Score=36.98 Aligned_cols=44 Identities=20% Similarity=0.044 Sum_probs=36.3
Q ss_pred HHHHHHHHHhcchhHhHhhhccCCcCCCCCCCCCCchHHHHHHH
Q 021288 103 FLLPASLIVINDIAAYIFGFFFGRTPLIKLSPKKTWEGFIGASV 146 (314)
Q Consensus 103 ~ll~~~~v~~nD~~AY~~G~~fGk~kL~~iSPkKTwEGfiGG~i 146 (314)
+.+.+..|.++|..+-.-++-+++++....+|||+||+..-++.
T Consensus 270 ~~i~~s~vL~~~~~~~cp~~d~~t~~~~~c~p~~~F~~~~y~lp 313 (432)
T KOG1440|consen 270 FGILFSYVLGHYTFFTCPVKDFSTTPLLSCEPKPLFEPQTYGLP 313 (432)
T ss_pred HHHHHHHHhccCeEEEecccccCCCCccccCcccccCcceecCC
Confidence 34455667899999999999999999779999999999876643
No 18
>PF06858 NOG1: Nucleolar GTP-binding protein 1 (NOG1); InterPro: IPR010674 This domain represents a conserved region of approximately 60 residues in length within nucleolar GTP-binding protein 1 (NOG1). The NOG1 family includes eukaryotic, bacterial and archaeal proteins. In Saccharomyces cerevisiae, the NOG1 gene has been shown to be essential for cell viability, suggesting that NOG1 may play an important role in nucleolar functions. In particular, NOG1 is believed to be functionally linked to ribosome biogenesis, which occurs in the nucleolus. In eukaryotes, NOG1 mutants were found to disrupt the biogenesis of the 60S ribosomal subunit []. The DRG and OBG proteins as well as the prokaryotic NOG-like proteins are homologous throughout their length to the amino half of eukaryotic NOG1, which contains the GTP binding motifs (IPR006073 from INTERPRO); the N-terminal GTP-binding motif is required for function.; GO: 0005525 GTP binding; PDB: 2E87_A.
Probab=38.92 E-value=25 Score=26.30 Aligned_cols=21 Identities=19% Similarity=0.409 Sum_probs=16.8
Q ss_pred CCHHHHHHHHHHHHHHHHhcc
Q 021288 290 LTYEEQKALYMKLGEILQERL 310 (314)
Q Consensus 290 l~~~~q~~l~~~l~~~~~~~~ 310 (314)
-|.|||++|++.++..+.++-
T Consensus 29 ysie~Q~~L~~~ik~~F~~~P 49 (58)
T PF06858_consen 29 YSIEEQLSLFKEIKPLFPNKP 49 (58)
T ss_dssp S-HHHHHHHHHHHHHHTTTS-
T ss_pred CCHHHHHHHHHHHHHHcCCCC
Confidence 378999999999999987664
No 19
>COG0004 AmtB Ammonia permease [Inorganic ion transport and metabolism]
Probab=38.66 E-value=41 Score=34.26 Aligned_cols=38 Identities=34% Similarity=0.575 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHhhhhhhHHHHHHhhcCCCCcCCCCCCCCc
Q 021288 208 WHALCLGLFASIIAPFGGFFASGFKRAFKIKDFGDSIPGHG 248 (314)
Q Consensus 208 ~~~l~l~~~~sl~a~~GDl~~S~iKR~~~IKD~G~~iPGHG 248 (314)
+-+++++++++++..++ .+.+||..|+-|.=+.+|.||
T Consensus 281 ~~A~iiGii~g~i~~~a---~~~lk~~l~~DD~ld~f~vHG 318 (409)
T COG0004 281 WGALIIGLIAGVICYFA---VKLLKKKLGVDDALDVFGVHG 318 (409)
T ss_pred HHHHHHHHHHHHHHHHH---HHHHHHhcCCCCcccceeccc
Confidence 45778888877776654 688999999999999999993
No 20
>PRK10666 ammonium transporter; Provisional
Probab=38.47 E-value=20 Score=36.67 Aligned_cols=41 Identities=29% Similarity=0.383 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHHhhhhhhHHHHHHhhcCCCCcCCCCCCCC--cchh
Q 021288 208 WHALCLGLFASIIAPFGGFFASGFKRAFKIKDFGDSIPGH--GGIT 251 (314)
Q Consensus 208 ~~~l~l~~~~sl~a~~GDl~~S~iKR~~~IKD~G~~iPGH--GGil 251 (314)
+.++++|++++++..++- ..+||.++|-|--+.+|=| ||++
T Consensus 304 ~~A~iiG~vag~v~~~~~---~~l~~~~~iDD~~~a~~vHgv~Gi~ 346 (428)
T PRK10666 304 GGALIIGVVAGLAGLWGV---TMLKRWLRVDDPCDVFGVHGVCGIV 346 (428)
T ss_pred HHHHHHHHHHHHHHHHHH---HHHHhcCCCCCCcCccHhhhHhHHH
Confidence 578889999998887663 3488889999999999999 4544
No 21
>PF09150 Carot_N: Orange carotenoid protein, N-terminal ; InterPro: IPR015233 Carotenoids such as beta-carotene, lycopene, lutein and beta-cryptoxanthine are produced in plants and certain bacteria, algae and fungi, where they function as accessory photosynthetic pigments and as scavengers of oxygen radicals for photoprotection. They are also essential dietary nutrients in animals. Orange carotenoid-binding proteins (OCP) were first identified in cyanobacterial species, where they occur associated with phycobilisome in the cellular thylakoid membrane. These proteins function in photoprotection, and are essential for inhibiting white and blue-green light non-photochemical quenching (NPQ) [, ]. Carotenoids improve the photoprotectant activity by broadening OCP's absorption spectrum and facilitating the dissipation of absorbed energy. OCP acts as a homodimer, and binds one molecule of carotenoid (3'-hydroxyechinenone) and one chloride ion per subunit, where the carotenoid binding site is lined with a striking number of methionine residues. The carotenoid 3'-hydroxyechinenone is not found in higher plants. OCP has two domains: an N-terminal helical domain and a C-terminal domain that resembles a NTF2 (nuclear transport factor 2) domain. OCP can be proteolytically cleaved into a red form (RCP), which lacks 15 residues from the N terminus and approximately 150 residues from the C terminus []. This entry represents the N-terminal domain found predominantly in prokaryotic orange carotenoid proteins and related carotenoid-binding proteins. It adopts an alpha-helical structure consisting of two four-helix bundles [].; GO: 0031404 chloride ion binding, 0016037 light absorption, 0030089 phycobilisome; PDB: 3MG3_B 3MG1_A 3MG2_A 1M98_A.
Probab=36.52 E-value=45 Score=29.76 Aligned_cols=25 Identities=32% Similarity=0.339 Sum_probs=20.4
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH
Q 021288 279 VEMILEQILTALTYEEQKALYMKLGE 304 (314)
Q Consensus 279 ~~~~~~~~~~~l~~~~q~~l~~~l~~ 304 (314)
.+.+++.|. +||+|||+++++-|-+
T Consensus 58 ae~ll~qik-~ms~~EQlq~MrDL~~ 82 (159)
T PF09150_consen 58 AEGLLNQIK-QMSQEEQLQAMRDLAN 82 (159)
T ss_dssp HHHHHHHHH-CS-HHHHHHHHHHHHH
T ss_pred HHHHHHHHH-hCCHHHHHHHHHHHHh
Confidence 578899886 6999999999988765
No 22
>cd02572 PseudoU_synth_hDyskerin PseudoU_synth_hDyskerin_Like: Pseudouridine synthase, human dyskerin like. This group consists of eukaryotic and archeal pseudouridine synthases similar to human dyskerin, Saccharomyces cerevisiae Cbf5, and Drosophila melanogaster Mfl (minifly protein). Pseudouridine synthases catalyze the isomerization of specific uridines in an RNA molecule to pseudouridines (5-ribosyluracil, psi). No cofactor is required. S. cerevisiae Cbf5 and human dyskerin are nucleolar proteins that, with the help of guide RNAs, make the hundreds of psueudouridnes present in rRNA and small nuclear RNAs (snRNAs). Cbf5/Dyskerin is the catalytic subunit of eukaryotic box H/ACA small nucleolar ribonucleoprotein (snoRNP) particles. D. melanogaster mfl hosts in its fourth intron, a box H/AC snoRNA gene. In addition dyskerin is likely to have a structural role in the telomerase complex. Mutations in human dyskerin cause X-linked dyskeratosis congenitas. Mutations in Drosophila Mfl r
Probab=35.33 E-value=22 Score=31.96 Aligned_cols=27 Identities=22% Similarity=0.315 Sum_probs=22.3
Q ss_pred HHHHhhcCCCCcCCCCCCCCcchhhhhhhhhH
Q 021288 228 ASGFKRAFKIKDFGDSIPGHGGITDRMDCQMV 259 (314)
Q Consensus 228 ~S~iKR~~~IKD~G~~iPGHGGilDR~Ds~l~ 259 (314)
-+.+||.+|.|.- ||+|-||.+-+=++
T Consensus 19 v~~~k~~~~~kkv-----GH~GTLDp~A~GvL 45 (182)
T cd02572 19 VAWIKRILGVEKT-----GHSGTLDPKVTGCL 45 (182)
T ss_pred HHHHHHHhCCCcc-----CcCCCCCCcCeeEE
Confidence 3789999999874 99999999986443
No 23
>TIGR00836 amt ammonium transporter. The mechanism of energy coupling, if any, to methyl-NH2 or NH3 uptake by the AmtB protein of E. coli is not entirely clear. NH4+ uniport driven by the pmf, energy independent NH3 facilitation, and NH4+/K+ antiport have been proposed as possible transport mechanisms. In Corynebacterium glutamicum and Arabidopsis thaliana, uptake via the Amt1 homologues of AmtB has been reported to be driven by the pmf.
Probab=34.12 E-value=15 Score=37.16 Aligned_cols=38 Identities=34% Similarity=0.587 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHhhhhhhHHHHHHhhcCCCCcCCCCCCCCc
Q 021288 208 WHALCLGLFASIIAPFGGFFASGFKRAFKIKDFGDSIPGHG 248 (314)
Q Consensus 208 ~~~l~l~~~~sl~a~~GDl~~S~iKR~~~IKD~G~~iPGHG 248 (314)
+.++++|++++++..+|- ..+||.++|-|--+.+|=||
T Consensus 280 ~~A~viG~iag~~~~~~~---~~l~~~~~iDD~~~~~~vHg 317 (403)
T TIGR00836 280 WGAIIIGLVAGVLCYLAV---SKLKKKLKIDDPLDAFAVHG 317 (403)
T ss_pred HHHHHHHHHHHHHHHHHH---HHHHHHcCCCCCcccchhhh
Confidence 678888999888887664 44788899999988999883
No 24
>COG0575 CdsA CDP-diglyceride synthetase [Lipid metabolism]
Probab=33.16 E-value=1.1e+02 Score=28.75 Aligned_cols=56 Identities=18% Similarity=0.108 Sum_probs=37.0
Q ss_pred HHHHHHHHhhhhhhHHHHHHhhcCCCCc-CCCCCCCC---cchhhhhhhhhHHHHHHHHH
Q 021288 212 CLGLFASIIAPFGGFFASGFKRAFKIKD-FGDSIPGH---GGITDRMDCQMVMAVFAYIY 267 (314)
Q Consensus 212 ~l~~~~sl~a~~GDl~~S~iKR~~~IKD-~G~~iPGH---GGilDR~Ds~l~~~~f~y~y 267 (314)
...++..++.-.+|.+++.+||++|.+. .+++=|+- |=+..-+.+.+....+...+
T Consensus 134 ~~~l~l~~~vw~~Di~Ayf~Gr~fGk~kl~p~iSP~KT~eGfigG~~~~~~v~~~~~~~~ 193 (265)
T COG0575 134 ILLLLLFLGVWAGDIGAYFVGRRFGKHKLAPKISPKKTWEGFIGGALGAVLVAVLVIFLL 193 (265)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHcCCCCCCCcCCCCCchHHhHHHHHHHHHHHHHHHHHH
Confidence 3466677788899999999999999986 56677865 33333334444444433333
No 25
>TIGR03644 marine_trans_1 probable ammonium transporter, marine subtype. Members of this protein family are well conserved subclass of putative ammonimum transporters, belonging to the much broader set of ammonium/methylammonium transporter described by TIGR00836. Species with this transporter tend to be marine bacteria. Partial phylogenetic profiling (PPP) picks a member of this protein family as the single best-scoring protein vs. a reference profile for the marine environment Genome Property for a large number of different query genomes. This finding by PPP suggests that this transporter family represents an important adaptation to the marine environment.
Probab=32.22 E-value=22 Score=35.97 Aligned_cols=37 Identities=27% Similarity=0.336 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHhhhhhhHHHHHHhhcCCCCcCCCCCCCCc
Q 021288 208 WHALCLGLFASIIAPFGGFFASGFKRAFKIKDFGDSIPGHG 248 (314)
Q Consensus 208 ~~~l~l~~~~sl~a~~GDl~~S~iKR~~~IKD~G~~iPGHG 248 (314)
+.++++|++++++..++-- ++|.++|-|--+.+|=||
T Consensus 294 ~~A~iiG~iag~v~~~~~~----~~~~~~iDD~~~~~~vHg 330 (404)
T TIGR03644 294 LAATLIGAVGGVIVVFSIV----LLDKLKIDDPVGAISVHG 330 (404)
T ss_pred HHHHHHHHHHHHHHHHHHH----HHHhCCCCCCcCchHhhh
Confidence 6789999999999887653 456699999999999994
No 26
>PF04868 PDE6_gamma: Retinal cGMP phosphodiesterase, gamma subunit; InterPro: IPR006952 Retinal rod and cone cGMP phosphodiesterases function as the effector enzymes in the vertebrate visual transduction cascade. This family represents the inhibitory gamma subunit [], which is also expressed outside retinal tissues and has been shown to interact with the G-protein-coupled receptor kinase 2 signalling system to regulate the epidermal growth factor- and thrombin-dependent stimulation of p42/p44 mitogen-activated protein kinase in human embryonic kidney 293 cells [].; GO: 0004114 3',5'-cyclic-nucleotide phosphodiesterase activity, 0030553 cGMP binding, 0007601 visual perception; PDB: 2JU4_A 1FQJ_C 3JWR_D.
Probab=30.86 E-value=30 Score=27.33 Aligned_cols=18 Identities=44% Similarity=0.837 Sum_probs=12.6
Q ss_pred CCCCcCCCCCCCCcchhh
Q 021288 235 FKIKDFGDSIPGHGGITD 252 (314)
Q Consensus 235 ~~IKD~G~~iPGHGGilD 252 (314)
-|+|-||+-|||+-|+-+
T Consensus 41 kGvkGf~~~ipgmeglg~ 58 (83)
T PF04868_consen 41 KGVKGFGDDIPGMEGLGT 58 (83)
T ss_dssp SSSS--TTSSSSSTT-SH
T ss_pred CcccCccCcCcccccccC
Confidence 478999999999988844
No 27
>PRK00989 truB tRNA pseudouridine synthase B; Provisional
Probab=28.89 E-value=33 Score=32.25 Aligned_cols=27 Identities=19% Similarity=0.437 Sum_probs=22.2
Q ss_pred HHHHhhcCCCCcCCCCCCCCcchhhhhhhhhH
Q 021288 228 ASGFKRAFKIKDFGDSIPGHGGITDRMDCQMV 259 (314)
Q Consensus 228 ~S~iKR~~~IKD~G~~iPGHGGilDR~Ds~l~ 259 (314)
-+.+||.+|.|.- ||+|-||.+-+=++
T Consensus 26 v~~ikk~~~~kKv-----GH~GTLDP~AtGvL 52 (230)
T PRK00989 26 IRSLTKLIGVKKI-----GHAGTLDPFATGVM 52 (230)
T ss_pred HHHHHHHhCCCcC-----CcCccCCCCCeeEE
Confidence 4678999999974 99999999986443
No 28
>PF09720 Unstab_antitox: Putative addiction module component; InterPro: IPR013406 This entry defines several short bacterial proteins, typically about 75 amino acids long, which are always found as part of a pair (at least) of small genes. The other protein in the pair always belongs to a family of plasmid stabilisation proteins (IPR007712 from INTERPRO). It is likely that this protein and its partner comprise some form of addiction module - a pair of genes consisting of a stable toxin and an unstable antitoxin which mediate programmed cell death [] - although these gene pairs are usually found on the bacterial main chromosome.
Probab=28.18 E-value=59 Score=23.07 Aligned_cols=21 Identities=29% Similarity=0.283 Sum_probs=18.0
Q ss_pred cCCHHHHHHHHHHHHHHHHhc
Q 021288 289 ALTYEEQKALYMKLGEILQER 309 (314)
Q Consensus 289 ~l~~~~q~~l~~~l~~~~~~~ 309 (314)
+||.+||++|++.|-+.|...
T Consensus 1 ~L~~~er~~L~e~L~~sl~~~ 21 (54)
T PF09720_consen 1 QLPPEERAELAEELWDSLDDP 21 (54)
T ss_pred CcCHHHHHHHHHHHHHHhccc
Confidence 489999999999999887753
No 29
>PRK02868 hypothetical protein; Provisional
Probab=28.03 E-value=1.1e+02 Score=28.99 Aligned_cols=19 Identities=21% Similarity=0.321 Sum_probs=14.7
Q ss_pred HHHHHHcCCHHHHHHHHHH
Q 021288 283 LEQILTALTYEEQKALYMK 301 (314)
Q Consensus 283 ~~~~~~~l~~~~q~~l~~~ 301 (314)
++.+.+|||+|||..+++.
T Consensus 60 l~~~v~~ms~eqq~~ll~~ 78 (245)
T PRK02868 60 LFELVQNMSPEQQQILLKA 78 (245)
T ss_pred HHHHHHhCCHHHHHHHHHH
Confidence 4445668999999999864
No 30
>PF01509 TruB_N: TruB family pseudouridylate synthase (N terminal domain); InterPro: IPR002501 Pseudouridine synthases catalyse the isomerisation of uridine to pseudouridine (Psi) in a variety of RNA molecules, and may function as RNA chaperones. Pseudouridine is the most abundant modified nucleotide found in all cellular RNAs. There are four distinct families of pseudouridine synthases that share no global sequence similarity, but which do share the same fold of their catalytic domain(s) and uracil-binding site and are descended from a common molecular ancestor. The catalytic domain consists of two subdomains, each of which has an alpha+beta structure that has some similarity to the ferredoxin-like fold (note: some pseudouridine synthases contain additional domains). The active site is the most conserved structural region of the superfamily and is located between the two homologous domains. These families are []: Pseudouridine synthase I, TruA. Pseudouridine synthase II, TruB, which contains and additional C-terminal PUA domain. Pseudouridine synthase RsuA (ribosomal small subunit) and RluC/RluD (ribosomal large subunits), both of which contain an additional N-terminal alpha-L RNA-binding motif. Pseudouridine synthase TruD, which has a natural circular permutation in the catalytic domain, as well as an insertion of a family-specific alpha+beta subdomain. TruB is responsible for the pseudouridine residue present in the T loops of virtually all tRNAs. TruB recognises the preformed 3-D structure of the T loop primarily through shape complementarity. It accesses its substrate uridyl residue by flipping out the nucleotide and disrupts the tertiary structure of tRNA []. This entry represents pseudouridine synthase TruB, as well as Cbf5p that modifies rRNA [].; GO: 0006396 RNA processing; PDB: 1SGV_B 2AUS_C 3UAI_A 3U28_A 2RFK_A 3LWV_A 3HJY_A 3HAX_A 3LWO_A 3HAY_A ....
Probab=27.78 E-value=20 Score=31.26 Aligned_cols=22 Identities=36% Similarity=0.682 Sum_probs=16.6
Q ss_pred hhcCCCCcCCCCCCCCcchhhhhhhhh
Q 021288 232 KRAFKIKDFGDSIPGHGGITDRMDCQM 258 (314)
Q Consensus 232 KR~~~IKD~G~~iPGHGGilDR~Ds~l 258 (314)
||.+|+|.- ||+|-||-+-+=+
T Consensus 1 r~~~~~~Kv-----GH~GTLDP~AsGv 22 (149)
T PF01509_consen 1 RRILGIKKV-----GHGGTLDPFASGV 22 (149)
T ss_dssp HHHTTBSSE-----EESS-SSTT-EEE
T ss_pred CcccCccee-----ccccccCCcceEE
Confidence 788999986 9999999987533
No 31
>TIGR02574 stabl_TIGR02574 putative addiction module component, TIGR02574 family. Members of this family are bacterial proteins, typically are about 75 amino acids long, always found as part of a pair (at least) of two small genes. The other in the pair always belongs to a subfamily of the larger family pfam05016 (although not necessarily scoring above the designated cutoff), which contains plasmid stabilization proteins. It is likely that this protein and its pfam05016 member partner comprise some form of addiction module, although these gene pairs usually are found on the bacterial main chromosome.
Probab=27.29 E-value=62 Score=23.92 Aligned_cols=21 Identities=19% Similarity=0.230 Sum_probs=18.6
Q ss_pred cCCHHHHHHHHHHHHHHHHhc
Q 021288 289 ALTYEEQKALYMKLGEILQER 309 (314)
Q Consensus 289 ~l~~~~q~~l~~~l~~~~~~~ 309 (314)
+||.+|+++|++.|-+.|.+.
T Consensus 2 ~L~~~ERl~Lve~LwdSL~~~ 22 (63)
T TIGR02574 2 ALSPDERIQLVEDIWDSIAAE 22 (63)
T ss_pred CCCHHHHHHHHHHHHHHhccC
Confidence 599999999999999999743
No 32
>PRK04099 truB tRNA pseudouridine synthase B; Provisional
Probab=26.96 E-value=36 Score=32.83 Aligned_cols=27 Identities=26% Similarity=0.425 Sum_probs=22.4
Q ss_pred HHHHhhcCCCCcCCCCCCCCcchhhhhhhhhH
Q 021288 228 ASGFKRAFKIKDFGDSIPGHGGITDRMDCQMV 259 (314)
Q Consensus 228 ~S~iKR~~~IKD~G~~iPGHGGilDR~Ds~l~ 259 (314)
-+.+||.++.|.- ||+|-||.+-+=++
T Consensus 19 v~~ikk~~~~kKv-----GH~GTLDP~AtGvL 45 (273)
T PRK04099 19 LSRLKRKYGVKKA-----GFSGTLDPFAKGVL 45 (273)
T ss_pred HHHHHHHhCCCcc-----ccCccCCCCCeeEE
Confidence 4789999999975 99999999985433
No 33
>PF11283 DUF3084: Protein of unknown function (DUF3084); InterPro: IPR021435 This bacterial family of proteins has no known function.
Probab=26.36 E-value=40 Score=26.71 Aligned_cols=26 Identities=31% Similarity=0.565 Sum_probs=19.0
Q ss_pred hcchhHhH---hhhccCCcCCC--CCCCCCC
Q 021288 112 INDIAAYI---FGFFFGRTPLI--KLSPKKT 137 (314)
Q Consensus 112 ~nD~~AY~---~G~~fGk~kL~--~iSPkKT 137 (314)
..-.-||+ .|++.||+++. .+-||.|
T Consensus 12 lgG~IA~~GD~iG~kvGKkrlslFgLRPr~T 42 (79)
T PF11283_consen 12 LGGLIAYLGDRIGSKVGKKRLSLFGLRPRYT 42 (79)
T ss_pred HHHHHHHHHHHHHHHHhHHHhhhhcCCCccc
Confidence 33344444 57889999886 8999998
No 34
>cd07357 HN_L-whirlin_R2_like Second harmonin_N_like domain (repeat 2) of the long isoform of whirlin, and related domains. This subgroup contains the second of two harmonin_N_like domains found in the long isoform of whirlin, and related domains. Whirlin is a postsynaptic density-95/discs-large/ZO-1 (PDZ) domain-containing scaffold protein which binds various components of the Usher protein network of the inner ear and the retina: erythrocyte protein p55, usherin, VlGR1, and myosin XVa. The long isoform of whirlin contains two harmonin_N_like domains, and three PDZ protein-binding domains, PDZ1-3. The short whirlin isoform, derived from an alternative start ATG, lacks the first harmonin_N_like domain but has in common with the long isoform, this second harmonin_N_like domain (designated repeat 2, included in this subgroup) and PDZ3. This second harmonin_N_like domain is a putative protein-binding module based on its sequence similarity to the harmonin N-domain.
Probab=25.47 E-value=1.1e+02 Score=24.34 Aligned_cols=45 Identities=13% Similarity=0.305 Sum_probs=36.0
Q ss_pred HHHHhccCCCCCHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccC
Q 021288 267 YHQSFIVPQSFRVEMILEQILTALTYEEQKALYMKLGEILQERLFG 312 (314)
Q Consensus 267 y~~~fi~~~~~~~~~~~~~~~~~l~~~~q~~l~~~l~~~~~~~~~~ 312 (314)
|..-+- ....|||........-|+.+++.-|+..+++.+.-+++.
T Consensus 27 yl~eY~-~~~~tVealV~aL~elLnt~~K~sLLsEiR~lI~p~Dl~ 71 (81)
T cd07357 27 YLDEYR-SGHISVDALVMALFELLNTHEKFSLLSEIRELISPQDLD 71 (81)
T ss_pred HHHHHH-cCCCCHHHHHHHHHHHhccHHHHHHHHHHHHhcChhhhh
Confidence 333333 357899998888888899999999999999998888753
No 35
>PRK10236 hypothetical protein; Provisional
Probab=24.93 E-value=89 Score=29.64 Aligned_cols=29 Identities=10% Similarity=0.212 Sum_probs=24.0
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 021288 279 VEMILEQILTALTYEEQKALYMKLGEILQ 307 (314)
Q Consensus 279 ~~~~~~~~~~~l~~~~q~~l~~~l~~~~~ 307 (314)
+.++++....+||+|||.+|.+.++..++
T Consensus 118 l~kll~~a~~kms~eE~~~L~~~l~~~l~ 146 (237)
T PRK10236 118 LEQFLRNTWKKMDEEHKQEFLHAVDARVN 146 (237)
T ss_pred HHHHHHHHHHHCCHHHHHHHHHHHhhhcc
Confidence 45677778888999999999999987653
No 36
>PRK00020 truB tRNA pseudouridine synthase B; Provisional
Probab=24.60 E-value=44 Score=31.74 Aligned_cols=26 Identities=23% Similarity=0.353 Sum_probs=21.2
Q ss_pred HHHhhcCCCCcCCCCCCCCcchhhhhhhhhH
Q 021288 229 SGFKRAFKIKDFGDSIPGHGGITDRMDCQMV 259 (314)
Q Consensus 229 S~iKR~~~IKD~G~~iPGHGGilDR~Ds~l~ 259 (314)
+.+||.+|.|.- ||+|-||.+-+=++
T Consensus 28 ~~vkr~~~~kKv-----GH~GTLDP~AtGvL 53 (244)
T PRK00020 28 QRAKRTVDAAKA-----GHTGTLDPFATGLL 53 (244)
T ss_pred HHHHHHhCCCCC-----CcCCcCCCcCeeEE
Confidence 566999999974 99999999986443
No 37
>PRK14122 tRNA pseudouridine synthase B; Provisional
Probab=23.62 E-value=48 Score=32.59 Aligned_cols=26 Identities=23% Similarity=0.423 Sum_probs=21.4
Q ss_pred HHHHhhcCCCCcCCCCCCCCcchhhhhhhhh
Q 021288 228 ASGFKRAFKIKDFGDSIPGHGGITDRMDCQM 258 (314)
Q Consensus 228 ~S~iKR~~~IKD~G~~iPGHGGilDR~Ds~l 258 (314)
-..+||.+++|.- ||+|-||.+-+=+
T Consensus 18 v~~vrr~l~~kKv-----GH~GTLDP~AtGv 43 (312)
T PRK14122 18 VNRARRALGTRRV-----GHTGTLDPLATGV 43 (312)
T ss_pred HHHHHHHhCCCCC-----CCCCCCCCcCeee
Confidence 3578999999975 9999999996543
No 38
>COG4956 Integral membrane protein (PIN domain superfamily) [General function prediction only]
Probab=23.22 E-value=3.8e+02 Score=26.78 Aligned_cols=28 Identities=14% Similarity=0.204 Sum_probs=18.8
Q ss_pred CCCCCCchHHHHHHHHHHHHHHHHHHHh
Q 021288 132 LSPKKTWEGFIGASVATITSAFVLANIM 159 (314)
Q Consensus 132 iSPkKTwEGfiGG~i~t~i~~~~~~~~~ 159 (314)
+.-+-.+++.+|++++-++..++..+..
T Consensus 36 ~~~n~~v~~ligai~~~li~~~~~~~~~ 63 (356)
T COG4956 36 FLNNEYVDALIGAIIFFLISFWFGKYVL 63 (356)
T ss_pred hhccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455667888998888777665554443
No 39
>PF00909 Ammonium_transp: Ammonium Transporter Family; InterPro: IPR024041 This ammonium transporter domain consists of a duplication of 2 structural repeats of five helices each plus one extra C-terminal helix. It has been described as a channel that spans the membrane 11 times [].; PDB: 3B9Z_A 3B9Y_A 3B9W_A 3BHS_A 2B2H_A 2B2J_A 2B2F_A 2B2I_A 2NPG_A 2NUU_E ....
Probab=22.54 E-value=2e+02 Score=28.76 Aligned_cols=38 Identities=37% Similarity=0.563 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHhhhhhhHHHHHHhhcCCCCcCCCCCCCCc
Q 021288 208 WHALCLGLFASIIAPFGGFFASGFKRAFKIKDFGDSIPGHG 248 (314)
Q Consensus 208 ~~~l~l~~~~sl~a~~GDl~~S~iKR~~~IKD~G~~iPGHG 248 (314)
+.++++|++++++..+|- +.++|+.+|.|--+.+|=||
T Consensus 275 ~~A~~iG~iag~i~~~~~---~~l~~~~~iDD~~~~~~vHg 312 (399)
T PF00909_consen 275 WGALLIGAIAGLISYFGV---SWLLKRLKIDDPVGAFAVHG 312 (399)
T ss_dssp HHHHHHHHHHHHHHHHHH---HHHHHHHTS-HTTGHHHHCH
T ss_pred HHHHHhhhhHhhhhhhhe---ecccceeEeccccceEeeee
Confidence 567888888877776653 37889999999888888883
No 40
>TIGR00431 TruB tRNA pseudouridine 55 synthase. TruB, the tRNA pseudouridine 55 synthase, converts uracil to pseudouridine in the T loop (not the anticodon loop - beware mis-annotation in Swiss-Prot) of most tRNAs of all three domains of life. This model is built on a seed alignment of bacterial proteins only. Saccharomyces cerevisiae protein YNL292w (Pus4) has been shown to be the pseudouridine 55 synthase of both cytosolic and mitochondrial compartments, active at no other position on tRNA and the only enzyme active at that position in the species. A distinct yeast protein YLR175w, (centromere/microtubule-binding protein CBF5) is an rRNA pseudouridine synthase, and the archaeal set is much more similar to CBF5 than to Pus4. It is unclear whether the archaeal proteins found by this model are tRNA pseudouridine 55 synthases like TruB, rRNA pseudouridine synthases like CBF5, or (as suggested by the absence of paralogs in the Archaea) both. CBF5 likely has additional, eukaryotic-specific
Probab=21.73 E-value=54 Score=30.34 Aligned_cols=27 Identities=22% Similarity=0.470 Sum_probs=22.2
Q ss_pred HHHHhhcCCCCcCCCCCCCCcchhhhhhhhhH
Q 021288 228 ASGFKRAFKIKDFGDSIPGHGGITDRMDCQMV 259 (314)
Q Consensus 228 ~S~iKR~~~IKD~G~~iPGHGGilDR~Ds~l~ 259 (314)
-+.+||.+++|.- ||+|-||.+-+=++
T Consensus 19 v~~vkk~~~~kKv-----GH~GTLDP~AsGvL 45 (209)
T TIGR00431 19 LAKVRRLLNVKKV-----GHTGTLDPFATGVL 45 (209)
T ss_pred HHHHHHHhCCCcC-----CCCCCCCCcCceEE
Confidence 4789999999963 99999999986444
No 41
>cd07347 harmonin_N_like N-terminal protein-binding module of harmonin and similar domains. This domain is found in harmonin, and similar proteins such as delphilin, and whirlin. These are postsynaptic density-95/discs-large/ZO-1 (PDZ) domain-containing scaffold proteins. Harmonin and whirlin are organizers of the Usher protein network of the inner ear and the retina, delphilin is found at the cerebellar parallel fiber-Purkinje cell synapses. This harmonin_N_like domain is found in either one or two copies. Harmonin contains a single copy, which is found at its N-terminus and binds specifically to a short internal peptide fragment of the cadherin 23 cytoplasmic domain; cadherin 23 is a component of the Usher protein network. Whirlin contains two copies of the harmonin_N_like domain; the first of these has been assayed for interaction with the cytoplasmic domain of cadherin 23 and no interaction could be detected.
Probab=21.60 E-value=2e+02 Score=22.60 Aligned_cols=44 Identities=9% Similarity=0.123 Sum_probs=33.3
Q ss_pred HHHHHHhccCCCCCHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcc
Q 021288 265 YIYHQSFIVPQSFRVEMILEQILTALTYEEQKALYMKLGEILQERL 310 (314)
Q Consensus 265 y~y~~~fi~~~~~~~~~~~~~~~~~l~~~~q~~l~~~l~~~~~~~~ 310 (314)
+.+++.|-... ||+........-|+..++..|+..++..+..++
T Consensus 25 ~~~L~~Y~~~~--~Vd~LV~~L~~vLdtPaK~~Ll~~iR~lIp~~d 68 (78)
T cd07347 25 TRALERYHQER--NVDDLVRDLYLVLDTPAKLPLLQFLRQVIPPKD 68 (78)
T ss_pred HHHHHHHHhcC--CHHHHHHHHHHHcCcHhHHHHHHHHHHHcCHHH
Confidence 44555555433 888888888778999999999999998876554
No 42
>PRK10847 hypothetical protein; Provisional
Probab=21.60 E-value=39 Score=30.94 Aligned_cols=24 Identities=21% Similarity=0.430 Sum_probs=19.4
Q ss_pred HHHHHhcchhHhHhhhccCCcCCC
Q 021288 107 ASLIVINDIAAYIFGFFFGRTPLI 130 (314)
Q Consensus 107 ~~~v~~nD~~AY~~G~~fGk~kL~ 130 (314)
..-....|..+|..||.+|++.+.
T Consensus 79 ~~Ga~lG~~i~Y~lGr~~G~~~l~ 102 (219)
T PRK10847 79 LIAAIVGDAVNYTIGRLFGEKLFS 102 (219)
T ss_pred HHHHHHHHHHHHHHHHHhCHHHhh
Confidence 344678899999999999987653
No 43
>cd00506 PseudoU_synth_TruB_like PseudoU_synth_TruB: Pseudouridine synthase, TruB family. This group consists of eukaryotic, bacterial and archeal pseudouridine synthases similar to Escherichia coli TruB, Saccharomyces cerevisiae Pus4, M. tuberculosis TruB, S. cerevisiae Cbf5 and human dyskerin. Pseudouridine synthases catalyze the isomerization of specific uridines in an RNA molecule to pseudouridines (5-ribosyluracil, psi). No cofactors are required. E. coli TruB, M. tuberculosis TruB and S. cerevisiae Pus4, make psi55 in the T loop of tRNAs. Pus4 catalyses the formation of psi55 in both cytoplasmic and mitochondrial tRNAs. Psi55 is almost universally conserved. S. cerevisiae Cbf5 and human dyskerin are nucleolar proteins that, with the help of guide RNAs, make the hundreds of psueudouridnes present in rRNA and small nuclear RNAs (snRNAs). Cbf5/Dyskerin is the catalytic subunit of eukaryotic box H/ACA small nucleolar ribonucleoprotein (snoRNP) particles. Mutations in human dysker
Probab=21.43 E-value=53 Score=30.33 Aligned_cols=27 Identities=26% Similarity=0.543 Sum_probs=21.9
Q ss_pred HHHHhhcCCCCcCCCCCCCCcchhhhhhhhhH
Q 021288 228 ASGFKRAFKIKDFGDSIPGHGGITDRMDCQMV 259 (314)
Q Consensus 228 ~S~iKR~~~IKD~G~~iPGHGGilDR~Ds~l~ 259 (314)
-..+||.++.|.- ||+|-||.+-+=++
T Consensus 17 v~~ik~~~~~kKv-----GH~GTLDP~AsGvL 43 (210)
T cd00506 17 VDTIRRIFLAEKV-----GHGGTLDPFATGVL 43 (210)
T ss_pred HHHHHHHhCcccc-----CCCCcCCCcCeeEE
Confidence 4678999999975 99999999986443
No 44
>PF11460 DUF3007: Protein of unknown function (DUF3007); InterPro: IPR021562 This is a family of uncharacterised proteins found in bacteria and eukaryotes.
Probab=21.32 E-value=1e+02 Score=25.72 Aligned_cols=21 Identities=33% Similarity=0.400 Sum_probs=16.4
Q ss_pred HHHHHHcCCHHHHHHHHHHHH
Q 021288 283 LEQILTALTYEEQKALYMKLG 303 (314)
Q Consensus 283 ~~~~~~~l~~~~q~~l~~~l~ 303 (314)
+++-...||+|||.+|.+++.
T Consensus 83 lqkRle~l~~eE~~~L~~eie 103 (104)
T PF11460_consen 83 LQKRLEELSPEELEALQAEIE 103 (104)
T ss_pred HHHHHHhCCHHHHHHHHHHhc
Confidence 455556799999999998875
No 45
>COG3140 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=21.09 E-value=1.1e+02 Score=22.76 Aligned_cols=20 Identities=30% Similarity=0.456 Sum_probs=17.4
Q ss_pred cCCHHHHHHHHHHHHHHHHh
Q 021288 289 ALTYEEQKALYMKLGEILQE 308 (314)
Q Consensus 289 ~l~~~~q~~l~~~l~~~~~~ 308 (314)
.||+|||.+-.+++++...+
T Consensus 7 ~LtHeqQQ~AVE~Iq~lMae 26 (60)
T COG3140 7 SLTHEQQQKAVERIQELMAE 26 (60)
T ss_pred cccHHHHHHHHHHHHHHHHc
Confidence 59999999999999987664
No 46
>cd07358 harmonin_N_like_1 Domains similar to the N-terminal protein-binding module of harmonin. This domain is a putative protein-binding module based on its sequence similarity to the N-terminal domain of harmonin. Harmonin (not belonging to this group) is a postsynaptic density-95/discs-large/ZO-1 (PDZ) domain-containing scaffold protein, which organizes the Usher protein network of the inner ear and the retina. This domain is also related to domains found in several other PDZ domain-containing scaffold proteins which organize supramolecular complexes. This subgroup is comprised of uncharacterized PDZ-containing proteins including a protein designated Bos taurus PDZ containing 7 which has an N-terminal PDZ domain and a C-terminal harmonin_N_like domain; however the characterized human PDZ containing 7 containing two PDZ domains does not appear to contain a harmonin_N_like domain.
Probab=20.97 E-value=1.3e+02 Score=23.80 Aligned_cols=46 Identities=15% Similarity=0.221 Sum_probs=36.6
Q ss_pred HHHHHHhccCCCCCHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccC
Q 021288 265 YIYHQSFIVPQSFRVEMILEQILTALTYEEQKALYMKLGEILQERLFG 312 (314)
Q Consensus 265 y~y~~~fi~~~~~~~~~~~~~~~~~l~~~~q~~l~~~l~~~~~~~~~~ 312 (314)
-+|...++... +||.+......-|+..+++-|++.++..+.-++++
T Consensus 25 ~~~~~~Y~~~G--~VE~LV~~Ll~iLd~p~KllLL~eIR~~v~p~DL~ 70 (78)
T cd07358 25 LRHCSRYVHEG--GVEDLVRPLLAILDRPEKLLLLRDIRSVVTPTDLG 70 (78)
T ss_pred HHhHHHHhcCC--CHHHHHHHHHHHHccHHHHHHHHHHHhcCCHHHHH
Confidence 45666666543 89999998888899999999999999877776653
No 47
>COG0130 TruB Pseudouridine synthase [Translation, ribosomal structure and biogenesis]
Probab=20.86 E-value=54 Score=31.56 Aligned_cols=24 Identities=29% Similarity=0.522 Sum_probs=21.1
Q ss_pred HHHHhhcCCCCcCCCCCCCCcchhhhhhh
Q 021288 228 ASGFKRAFKIKDFGDSIPGHGGITDRMDC 256 (314)
Q Consensus 228 ~S~iKR~~~IKD~G~~iPGHGGilDR~Ds 256 (314)
-+.+||.+|.|.- ||+|-||-+-+
T Consensus 32 v~~vkkil~~~K~-----GH~GTLDP~at 55 (271)
T COG0130 32 VAWVKRILGVEKA-----GHGGTLDPLAT 55 (271)
T ss_pred HHHHHHHhCcccc-----ccccccCCccc
Confidence 4789999999996 99999998864
No 48
>PRK14124 tRNA pseudouridine synthase B; Provisional
Probab=20.33 E-value=60 Score=31.80 Aligned_cols=27 Identities=19% Similarity=0.465 Sum_probs=22.3
Q ss_pred HHHHhhcCCCCcCCCCCCCCcchhhhhhhhhH
Q 021288 228 ASGFKRAFKIKDFGDSIPGHGGITDRMDCQMV 259 (314)
Q Consensus 228 ~S~iKR~~~IKD~G~~iPGHGGilDR~Ds~l~ 259 (314)
-+.+||.++.|.- ||+|-||.+-+=++
T Consensus 20 v~~vrr~l~~kKv-----GH~GTLDP~AtGvL 46 (308)
T PRK14124 20 VDEVRKKLKTRKV-----GHAGTLDPFATGVL 46 (308)
T ss_pred HHHHHHHcCCCcc-----CcCcCCCCCCcEEE
Confidence 4678999999975 99999999975443
No 49
>PF03701 UPF0181: Uncharacterised protein family (UPF0181); InterPro: IPR005371 This family contains small proteins of about 50 amino acids of unknown function. The family includes YoaH P76260 from SWISSPROT.
Probab=20.23 E-value=1.3e+02 Score=22.02 Aligned_cols=20 Identities=30% Similarity=0.459 Sum_probs=17.4
Q ss_pred cCCHHHHHHHHHHHHHHHHh
Q 021288 289 ALTYEEQKALYMKLGEILQE 308 (314)
Q Consensus 289 ~l~~~~q~~l~~~l~~~~~~ 308 (314)
.||+|||.+-.+++.++..+
T Consensus 7 ~LtHeeQQ~AvE~Iq~LMaq 26 (51)
T PF03701_consen 7 SLTHEEQQQAVERIQELMAQ 26 (51)
T ss_pred CCCHHHHHHHHHHHHHHHHh
Confidence 49999999999999987663
Done!