Query 021288
Match_columns 314
No_of_seqs 222 out of 1468
Neff 5.5
Searched_HMMs 29240
Date Mon Mar 25 15:29:57 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021288.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/021288hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2l9b_A MRNA 3'-END-processing 57.5 19 0.00065 29.0 5.5 33 277-309 36-68 (109)
2 2zo4_A Metallo-beta-lactamase 41.0 42 0.0014 29.7 5.9 69 222-293 210-283 (317)
3 1fqj_C Retinal ROD rhodopsin-s 32.8 16 0.00053 24.3 1.1 17 236-252 1-17 (42)
4 3ech_A MEXR, multidrug resista 30.4 61 0.0021 25.0 4.5 31 279-309 112-142 (142)
5 3b9w_A Ammonium transporter fa 23.9 44 0.0015 32.6 3.0 41 208-248 260-301 (407)
6 3mg1_A OCP, orange carotenoid 23.6 70 0.0024 30.3 4.2 25 279-304 64-88 (323)
7 2b2h_A AMT-1, ammonium transpo 23.6 31 0.0011 33.5 1.9 36 208-247 270-305 (399)
8 4dik_A Flavoprotein; TM0755, e 23.2 37 0.0013 32.6 2.3 38 214-252 208-245 (410)
9 3hnn_A Putative diflavin flavo 21.7 41 0.0014 29.3 2.2 36 216-252 201-236 (262)
10 3hd6_A Ammonium transporter RH 21.5 40 0.0014 33.7 2.2 45 208-252 309-356 (490)
11 4eba_G RNA15, KLLA0F09383P; HA 21.1 91 0.0031 26.9 4.1 32 277-308 41-72 (174)
12 2g9w_A Conserved hypothetical 21.0 83 0.0029 24.8 3.7 30 279-308 96-125 (138)
No 1
>2l9b_A MRNA 3'-END-processing protein RNA15; 3' END mRNA maturation, transcription; NMR {Saccharomyces cerevisiae}
Probab=57.50 E-value=19 Score=29.02 Aligned_cols=33 Identities=18% Similarity=0.132 Sum_probs=26.6
Q ss_pred CCHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhc
Q 021288 277 FRVEMILEQILTALTYEEQKALYMKLGEILQER 309 (314)
Q Consensus 277 ~~~~~~~~~~~~~l~~~~q~~l~~~l~~~~~~~ 309 (314)
.+++..+++.+..|++|++.+++++++++..+.
T Consensus 36 ~ap~~~IS~~Laslpp~Ql~eiL~qmK~~~~~n 68 (109)
T 2l9b_A 36 TTPAMMISSELAKKPKEVQLKFLQKFQEWTRAH 68 (109)
T ss_dssp SCHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHC
T ss_pred CchHHHHHHHHhcCCHHHHHHHHHHHHHHHHhC
Confidence 457756666777899999999999999987653
No 2
>2zo4_A Metallo-beta-lactamase family protein; hydrolase; 2.10A {Thermus thermophilus}
Probab=41.01 E-value=42 Score=29.74 Aligned_cols=69 Identities=12% Similarity=0.029 Sum_probs=34.1
Q ss_pred hhhhHHHHHHhhcCCCCcCCCCCCCCcchhhh----hhhhhHHHHHHHHHHHHhccCCCCCHHHHHHHHHH-cCCHH
Q 021288 222 PFGGFFASGFKRAFKIKDFGDSIPGHGGITDR----MDCQMVMAVFAYIYHQSFIVPQSFRVEMILEQILT-ALTYE 293 (314)
Q Consensus 222 ~~GDl~~S~iKR~~~IKD~G~~iPGHGGilDR----~Ds~l~~~~f~y~y~~~fi~~~~~~~~~~~~~~~~-~l~~~ 293 (314)
...+..+|. +|-.+. |.-.++||||+..+. ++..+----=..-.....+ .+..|++++.+.+.. .+++.
T Consensus 210 ~~~~~~~sl-~~l~~l-~~~~v~pgHg~~~~~~~~~i~~~~~~~~~~~~~i~~~l-~~~~t~~ei~~~~~~~~~~~~ 283 (317)
T 2zo4_A 210 PLKDFLRSL-DRLADL-GARVAYAGHFGPIADVRQRAEELKAHHQARLEALLALL-DGPKTAWELSLHLFPQELDPA 283 (317)
T ss_dssp HHHHHHHHH-HHHHTS-CCSEEEESSSSCBSCHHHHHHHHHHHHHHHHHHHHHHC-SSCBCHHHHHHHHCC------
T ss_pred hHHHHHHHH-HHHhcC-CCCEEECCCCCccCCHHHHHHHHHHHHHHHHHHHHHHh-cCCCCHHHHHHHHhhcccChh
Confidence 345555554 455455 447899999988754 3322211000000111122 456789988887754 45443
No 3
>1fqj_C Retinal ROD rhodopsin-sensitive CGMP 3',5'- cyclic phosphodiesterase gamma-subunit...; RGS9, transducin, effector, pdegamma, G protein; HET: GDP; 2.02A {Bos taurus} SCOP: j.51.1.1
Probab=32.80 E-value=16 Score=24.31 Aligned_cols=17 Identities=41% Similarity=0.917 Sum_probs=10.6
Q ss_pred CCCcCCCCCCCCcchhh
Q 021288 236 KIKDFGDSIPGHGGITD 252 (314)
Q Consensus 236 ~IKD~G~~iPGHGGilD 252 (314)
|+|-||+-+|||-|.--
T Consensus 1 gv~gf~~~ipGmeglgt 17 (42)
T 1fqj_C 1 GVQGFGDDIPGMEGLGT 17 (42)
T ss_dssp ----CTTCCSCCTTCCH
T ss_pred CCcccccccccccccCC
Confidence 68999999999976543
No 4
>3ech_A MEXR, multidrug resistance operon repressor; winged helix, helix-turn-helix, protein-peptide complex; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28 PDB: 1lnw_A 3mex_A
Probab=30.36 E-value=61 Score=25.04 Aligned_cols=31 Identities=23% Similarity=0.312 Sum_probs=25.1
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhc
Q 021288 279 VEMILEQILTALTYEEQKALYMKLGEILQER 309 (314)
Q Consensus 279 ~~~~~~~~~~~l~~~~q~~l~~~l~~~~~~~ 309 (314)
.+.....+...+++||+.++.+.|+++..|+
T Consensus 112 ~~~~~~~~~~~l~~~e~~~l~~~l~~l~~~~ 142 (142)
T 3ech_A 112 MSRVHDELFAPLTPVEQATLVHLLDQCLAAQ 142 (142)
T ss_dssp HHHHHHHHHTTSCHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHhcC
Confidence 3455566667899999999999999998874
No 5
>3b9w_A Ammonium transporter family; membrane protein, ammonia transport, rhesus protein, transpo protein; HET: BOG; 1.30A {Nitrosomonas europaea} PDB: 3bhs_A 3b9y_A* 3b9z_A*
Probab=23.94 E-value=44 Score=32.57 Aligned_cols=41 Identities=24% Similarity=0.253 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHHhhhhhh-HHHHHHhhcCCCCcCCCCCCCCc
Q 021288 208 WHALCLGLFASIIAPFGG-FFASGFKRAFKIKDFGDSIPGHG 248 (314)
Q Consensus 208 ~~~l~l~~~~sl~a~~GD-l~~S~iKR~~~IKD~G~~iPGHG 248 (314)
+.++++|++++++..+|- ++...+||.+||-|.=+.+|=||
T Consensus 260 ~~A~iIG~iaG~i~~~~~~~l~~~l~~~l~iDD~l~a~~vHg 301 (407)
T 3b9w_A 260 VGAFVIGLLGGAISVVGFVFIQPMLESKAKTIDTCGVHNLHG 301 (407)
T ss_dssp HHHHHHHHHHHHHHHHHHHTHHHHHHHHSCCCCTTCHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCeecch
Confidence 678999999999998886 45667889999999999999994
No 6
>3mg1_A OCP, orange carotenoid protein; carotenoid binding protein, echinone, phycobilisome; HET: ECH; 1.65A {Synechocystis SP} PDB: 3mg2_A* 3mg3_A* 1m98_A*
Probab=23.62 E-value=70 Score=30.26 Aligned_cols=25 Identities=24% Similarity=0.216 Sum_probs=21.3
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH
Q 021288 279 VEMILEQILTALTYEEQKALYMKLGE 304 (314)
Q Consensus 279 ~~~~~~~~~~~l~~~~q~~l~~~l~~ 304 (314)
.+.+++.|. +||.|||++.++-|-+
T Consensus 64 ae~ll~qik-~ms~eeQlqvMrDL~~ 88 (323)
T 3mg1_A 64 AENALKEIQ-AMGPLQQTQAMCDLAN 88 (323)
T ss_dssp HHHHHHHHH-HSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHH-hCCHHHHHHHHHHHHh
Confidence 578899886 5999999999988765
No 7
>2b2h_A AMT-1, ammonium transporter; membrane protein, transport protein; 1.54A {Archaeoglobus fulgidus} PDB: 2b2f_A 2b2i_A 2b2j_A
Probab=23.56 E-value=31 Score=33.50 Aligned_cols=36 Identities=28% Similarity=0.305 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHhhhhhhHHHHHHhhcCCCCcCCCCCCCC
Q 021288 208 WHALCLGLFASIIAPFGGFFASGFKRAFKIKDFGDSIPGH 247 (314)
Q Consensus 208 ~~~l~l~~~~sl~a~~GDl~~S~iKR~~~IKD~G~~iPGH 247 (314)
+.++++|++++++..++- .+||++||-|.=+.+|=|
T Consensus 270 ~~A~iiG~iag~i~~~~~----~l~~kl~iDD~l~a~~vH 305 (399)
T 2b2h_A 270 KGAIVIGLVAGIVCYLAM----DFRIKKKIDESLDAWAIH 305 (399)
T ss_dssp HHHHHHHHHHHHHHHHHH----HHHHHTTCCCTTCHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH----HHHHHcCCCCCCCceecc
Confidence 678899999999998875 688999999988888777
No 8
>4dik_A Flavoprotein; TM0755, electron transport, DI-iron protein; 1.75A {Thermotoga maritima} PDB: 4dil_A 1vme_A*
Probab=23.24 E-value=37 Score=32.61 Aligned_cols=38 Identities=18% Similarity=0.429 Sum_probs=32.0
Q ss_pred HHHHHHhhhhhhHHHHHHhhcCCCCcCCCCCCCCcchhh
Q 021288 214 GLFASIIAPFGGFFASGFKRAFKIKDFGDSIPGHGGITD 252 (314)
Q Consensus 214 ~~~~sl~a~~GDl~~S~iKR~~~IKD~G~~iPGHGGilD 252 (314)
--.+.+.+|++..+..++||..+. |---+.||||-++.
T Consensus 208 ~yy~~i~~p~~~~v~~~L~kl~~L-di~~I~P~HGpi~r 245 (410)
T 4dik_A 208 KYIVTVIGHYKNYILEGAEKLSSL-KIKALLPGHGLIWK 245 (410)
T ss_dssp HHHHHHHGGGHHHHHHHHHHHHTS-CCSEEEESSSCBBS
T ss_pred HHHHhhccchHHHHHHHHHHHhCC-CCCEEecCCcchhh
Confidence 456788899999999999998776 45789999999983
No 9
>3hnn_A Putative diflavin flavoprotein A 5; PSI-2, protein structure initiative, northeast structural GE consortium, NESG, NSR435A, DFA5, electron transport; 1.80A {Nostoc SP} PDB: 4fek_A
Probab=21.72 E-value=41 Score=29.33 Aligned_cols=36 Identities=17% Similarity=0.342 Sum_probs=26.3
Q ss_pred HHHHhhhhhhHHHHHHhhcCCCCcCCCCCCCCcchhh
Q 021288 216 FASIIAPFGGFFASGFKRAFKIKDFGDSIPGHGGITD 252 (314)
Q Consensus 216 ~~sl~a~~GDl~~S~iKR~~~IKD~G~~iPGHGGilD 252 (314)
...+.++...-....++|.... |.-.++||||.+++
T Consensus 201 ~~~~~~~~~~~~~~sl~~l~~L-~~~~i~PgHG~~~~ 236 (262)
T 3hnn_A 201 FNCLMAPHAIHVEAALEKISDL-QVRLYAVGHGPLVR 236 (262)
T ss_dssp HHHHTGGGHHHHHHHHHHHTTS-CCSEEEESSSSEES
T ss_pred HHHHhhhhHHHHHHHHHHHhCC-CCCEEECCCCcccc
Confidence 3445566666666778887776 44789999999986
No 10
>3hd6_A Ammonium transporter RH type C; ammonia, channel, rhesus, glycoprotein, membran structural genomics, PSI-2, protein structure initiative; HET: BOG; 2.10A {Homo sapiens}
Probab=21.54 E-value=40 Score=33.66 Aligned_cols=45 Identities=24% Similarity=0.383 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHHhhhhhh-HHHHHHhhcCCCCcCCCCCCCC--cchhh
Q 021288 208 WHALCLGLFASIIAPFGG-FFASGFKRAFKIKDFGDSIPGH--GGITD 252 (314)
Q Consensus 208 ~~~l~l~~~~sl~a~~GD-l~~S~iKR~~~IKD~G~~iPGH--GGilD 252 (314)
+.++++|++++++..+|- ++...+|+.+||-|.=+.++-| ||++-
T Consensus 309 ~~AliIG~iaG~i~~~~~~~l~~~l~~kl~iDD~lgv~~vHGv~Gi~G 356 (490)
T 3hd6_A 309 YGALIIGFVCGIISTLGFVYLTPFLESRLHIQDTCGINNLHGIPGIIG 356 (490)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCTTCHHHHTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHCCCCccccchHHhhHHHHHH
Confidence 678999999999998884 4456789999999999999888 45554
No 11
>4eba_G RNA15, KLLA0F09383P; HAT domain, heat repeat, monkeytail, CLP1, PCF11, structural RNA binding protein complex; 3.30A {Kluyveromyces lactis}
Probab=21.13 E-value=91 Score=26.91 Aligned_cols=32 Identities=19% Similarity=0.198 Sum_probs=26.3
Q ss_pred CCHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Q 021288 277 FRVEMILEQILTALTYEEQKALYMKLGEILQE 308 (314)
Q Consensus 277 ~~~~~~~~~~~~~l~~~~q~~l~~~l~~~~~~ 308 (314)
.+++..++..+.++++++..+++..++.+..+
T Consensus 41 t~pd~~IS~~Ls~lpp~QL~eiL~qmK~l~~~ 72 (174)
T 4eba_G 41 TTPAMCISSELGKLQKDQQMALLKVIQHFCKD 72 (174)
T ss_dssp CCHHHHHHHHHTTSCHHHHHHHHHHHHHGGGC
T ss_pred CCcHHHHHHHHhcCCHHHHHHHHHHHHHHHHh
Confidence 34786777777889999999999999987664
No 12
>2g9w_A Conserved hypothetical protein; DNA-binding domain, bacterial transcription repressor, DNA B protein; 1.80A {Mycobacterium tuberculosis} SCOP: a.4.5.39
Probab=20.97 E-value=83 Score=24.78 Aligned_cols=30 Identities=20% Similarity=0.205 Sum_probs=22.7
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Q 021288 279 VEMILEQILTALTYEEQKALYMKLGEILQE 308 (314)
Q Consensus 279 ~~~~~~~~~~~l~~~~q~~l~~~l~~~~~~ 308 (314)
.+.+...+...||+||+.+|.+.|+++..+
T Consensus 96 ~~~~~~~~~~~ls~eE~~~L~~lL~~~~~~ 125 (138)
T 2g9w_A 96 RQAALVHFVERVGADEADALRRALAELEAG 125 (138)
T ss_dssp HHHHHHHHHHHSCHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHhhhc
Confidence 345555556679999999999999987655
Done!