Query 021288
Match_columns 314
No_of_seqs 222 out of 1468
Neff 5.5
Searched_HMMs 13730
Date Mon Mar 25 15:30:04 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021288.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/021288hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1zavu1 a.108.1.1 (U:1-30) Rib 50.7 13 0.00095 21.5 4.2 27 277-304 1-27 (30)
2 d2p97a1 d.157.1.12 (A:1-200) H 42.8 3.5 0.00025 33.1 1.0 30 228-257 161-195 (200)
3 d1lnwa_ a.4.5.28 (A:) MexR rep 38.2 17 0.0013 27.1 4.5 31 279-309 111-141 (141)
4 d1m98a1 a.175.1.1 (A:2-175) Or 37.1 51 0.0037 26.5 7.4 25 279-304 63-87 (174)
5 d2fbha1 a.4.5.28 (A:8-144) Tra 26.7 30 0.0022 25.2 4.1 30 279-308 104-133 (137)
6 d1vmea2 d.157.1.3 (A:1-250) RO 26.2 15 0.0011 29.4 2.3 34 217-251 199-232 (250)
7 d1u7ga_ f.44.1.1 (A:) Ammonium 24.3 8.9 0.00065 34.7 0.5 37 208-247 280-316 (383)
8 d1t6sa1 a.4.5.60 (A:1-85) Segr 24.1 44 0.0032 23.1 4.4 41 270-310 16-56 (85)
9 d1ycga2 d.157.1.3 (A:2-250) Ni 22.5 15 0.0011 29.4 1.7 36 216-251 195-231 (249)
10 d3broa1 a.4.5.28 (A:3-137) Tra 22.3 38 0.0028 24.5 3.9 30 279-308 106-135 (135)
11 d3deua1 a.4.5.28 (A:2-141) Tra 21.1 55 0.004 23.7 4.6 29 280-308 108-136 (140)
No 1
>d1zavu1 a.108.1.1 (U:1-30) Ribosomal protein L7/12, oligomerisation (N-terminal) domain {Thermotoga maritima [TaxId: 2336]}
Probab=50.67 E-value=13 Score=21.45 Aligned_cols=27 Identities=33% Similarity=0.421 Sum_probs=22.8
Q ss_pred CCHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 021288 277 FRVEMILEQILTALTYEEQKALYMKLGE 304 (314)
Q Consensus 277 ~~~~~~~~~~~~~l~~~~q~~l~~~l~~ 304 (314)
.++|.+.+.|- +|+..|-.+|.++|.+
T Consensus 1 m~~eeiv~aie-kltvaelaelvk~led 27 (30)
T d1zavu1 1 MTIDEIIEAIE-KLTVSELAELVKKLED 27 (30)
T ss_dssp CCHHHHHHHHH-HSBHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHH-HhhHHHHHHHHHHHHh
Confidence 36889999776 5999999999998875
No 2
>d2p97a1 d.157.1.12 (A:1-200) Hypothetical protein Ava3068 {Anabaena variabilis [TaxId: 1172]}
Probab=42.77 E-value=3.5 Score=33.14 Aligned_cols=30 Identities=17% Similarity=0.273 Sum_probs=22.8
Q ss_pred HHHHhhcCCCCcCCCCCCCCcch-----hhhhhhh
Q 021288 228 ASGFKRAFKIKDFGDSIPGHGGI-----TDRMDCQ 257 (314)
Q Consensus 228 ~S~iKR~~~IKD~G~~iPGHGGi-----lDR~Ds~ 257 (314)
...+||-...+|+-.++||||.. -+|++.+
T Consensus 161 ~~sl~rl~~l~~~~~i~pgHG~~~~~~~~~rl~~l 195 (200)
T d2p97a1 161 VASVRRLAALEKVEAVLVGDGWSVFRDGRDRLKEL 195 (200)
T ss_dssp HHHHHHHHTCTTCCEEEESBBCCBCSCHHHHHHHH
T ss_pred HHHHHHHhcCCCCcEEECCCCchHhcCHHHHHHHH
Confidence 46688888999988999999954 3455544
No 3
>d1lnwa_ a.4.5.28 (A:) MexR repressor {Pseudomonas aeruginosa [TaxId: 287]}
Probab=38.21 E-value=17 Score=27.05 Aligned_cols=31 Identities=23% Similarity=0.312 Sum_probs=25.8
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhc
Q 021288 279 VEMILEQILTALTYEEQKALYMKLGEILQER 309 (314)
Q Consensus 279 ~~~~~~~~~~~l~~~~q~~l~~~l~~~~~~~ 309 (314)
.+...+.+...+++||+.++.+.|.+++..+
T Consensus 111 ~~~~~~~~~~~ls~~e~~~l~~~L~kl~a~~ 141 (141)
T d1lnwa_ 111 MSRVHDELFAPLTPVEQATLVHLLDQCLAAQ 141 (141)
T ss_dssp HHHHHHHHHTTSCHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHhCc
Confidence 4566677778899999999999999998754
No 4
>d1m98a1 a.175.1.1 (A:2-175) Orange carotenoid protein, N-terminal domain {Cyanobacteria (Arthrospira maxima) [TaxId: 129910]}
Probab=37.06 E-value=51 Score=26.52 Aligned_cols=25 Identities=24% Similarity=0.231 Sum_probs=21.4
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH
Q 021288 279 VEMILEQILTALTYEEQKALYMKLGE 304 (314)
Q Consensus 279 ~~~~~~~~~~~l~~~~q~~l~~~l~~ 304 (314)
.|.+++.|. +||+|||+++++-|-+
T Consensus 63 ae~ll~qik-~ms~~EQlq~MrDL~~ 87 (174)
T d1m98a1 63 AENTLQEIR-QMTPLQQTQAMCDLAN 87 (174)
T ss_dssp HHHHHHHHH-HSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHH-hCCHHHHHHHHHHHHh
Confidence 578899886 5999999999988765
No 5
>d2fbha1 a.4.5.28 (A:8-144) Transcriptional regulator PA3341 {Pseudomonas aeruginosa [TaxId: 287]}
Probab=26.71 E-value=30 Score=25.21 Aligned_cols=30 Identities=23% Similarity=0.216 Sum_probs=24.0
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Q 021288 279 VEMILEQILTALTYEEQKALYMKLGEILQE 308 (314)
Q Consensus 279 ~~~~~~~~~~~l~~~~q~~l~~~l~~~~~~ 308 (314)
...+.+.+...+++||+..+.+.|.+++.+
T Consensus 104 ~~~~~~~~~~~l~~~e~~~l~~~l~~l~~~ 133 (137)
T d2fbha1 104 AASVRNDVLTGIDESEQALCQQVLLRILAN 133 (137)
T ss_dssp HHHHHHHHTTTCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHHH
Confidence 445666677789999999999999988664
No 6
>d1vmea2 d.157.1.3 (A:1-250) ROO-like flavoprotein TM0755, N-terminal domain {Thermotoga maritima [TaxId: 2336]}
Probab=26.20 E-value=15 Score=29.44 Aligned_cols=34 Identities=21% Similarity=0.475 Sum_probs=23.5
Q ss_pred HHHhhhhhhHHHHHHhhcCCCCcCCCCCCCCcchh
Q 021288 217 ASIIAPFGGFFASGFKRAFKIKDFGDSIPGHGGIT 251 (314)
Q Consensus 217 ~sl~a~~GDl~~S~iKR~~~IKD~G~~iPGHGGil 251 (314)
....++.-+-....+||..+. |...++||||-++
T Consensus 199 ~~~~~~~~~~~~~sl~~l~~l-~~~~I~PGHGpi~ 232 (250)
T d1vmea2 199 VTVIGHYKNYILEGAEKLSSL-KIKALLPGHGLIW 232 (250)
T ss_dssp HHHHGGGHHHHHHHHHHHHTS-CCSEEEESSSCBB
T ss_pred cccccccHHHHHHHHHHHHCC-CCCEEECCCChhH
Confidence 344555556666778886555 4567999999876
No 7
>d1u7ga_ f.44.1.1 (A:) Ammonium transporter AmtB {Escherichia coli [TaxId: 562]}
Probab=24.30 E-value=8.9 Score=34.66 Aligned_cols=37 Identities=27% Similarity=0.399 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHhhhhhhHHHHHHhhcCCCCcCCCCCCCC
Q 021288 208 WHALCLGLFASIIAPFGGFFASGFKRAFKIKDFGDSIPGH 247 (314)
Q Consensus 208 ~~~l~l~~~~sl~a~~GDl~~S~iKR~~~IKD~G~~iPGH 247 (314)
+.+++++++++++..++ ...+||..++-|--+.+|-|
T Consensus 280 ~~A~~iG~i~g~i~~~~---~~~l~~~~~iDD~~~~~~vH 316 (383)
T d1u7ga_ 280 GGALIIGVVAGLAGLWG---VTMLKRLLRVDDPCDVFGVH 316 (383)
T ss_dssp HHHHHHHHHHHHHHHHH---HHHHHHHHCSCCGGGHHHHH
T ss_pred hhHHHHHhhccHHHHHH---HHHHHhhcccccccceEeeh
Confidence 56888899888888877 34678889999988888888
No 8
>d1t6sa1 a.4.5.60 (A:1-85) Segregation and condensation protein B, ScpB {Chlorobium tepidum [TaxId: 1097]}
Probab=24.08 E-value=44 Score=23.06 Aligned_cols=41 Identities=10% Similarity=0.038 Sum_probs=31.8
Q ss_pred HhccCCCCCHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcc
Q 021288 270 SFIVPQSFRVEMILEQILTALTYEEQKALYMKLGEILQERL 310 (314)
Q Consensus 270 ~fi~~~~~~~~~~~~~~~~~l~~~~q~~l~~~l~~~~~~~~ 310 (314)
.|+..+.+|++++-+.+-...+.++..+.++.|++...+++
T Consensus 16 LFas~~Pls~~~L~~~l~~~~~~~~i~~~l~~L~~~y~~~~ 56 (85)
T d1t6sa1 16 IFSSEEPVNLQTLSQITAHKFTPSELQEAVDELNRDYEATG 56 (85)
T ss_dssp HHHCSSCBCHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHT
T ss_pred HHhcCCCCCHHHHHHHHccCCCHHHHHHHHHHHHHHHhcCC
Confidence 45677889999988755435788999999999999886543
No 9
>d1ycga2 d.157.1.3 (A:2-250) Nitric oxide reductase N-terminal domain {Moorella thermoacetica [TaxId: 1525]}
Probab=22.46 E-value=15 Score=29.41 Aligned_cols=36 Identities=28% Similarity=0.470 Sum_probs=25.2
Q ss_pred HHHHhhhhhhHHHHHHhhcCCC-CcCCCCCCCCcchh
Q 021288 216 FASIIAPFGGFFASGFKRAFKI-KDFGDSIPGHGGIT 251 (314)
Q Consensus 216 ~~sl~a~~GDl~~S~iKR~~~I-KD~G~~iPGHGGil 251 (314)
+..+.++...-+.+.+||--.+ -|...++||||.++
T Consensus 195 ~~~~~~~~~~~~~~~l~~l~~l~l~~~~i~PgHGpv~ 231 (249)
T d1ycga2 195 YANILMPFSNLITKKLDEIQKINLAIKTIAPSHGIIW 231 (249)
T ss_dssp HHHHTGGGHHHHHHHHHHHHHTTCCCSEEEESSSCBB
T ss_pred chhccccCHHHHHHHHHHHHccCCCCCEEEeCCCchH
Confidence 4456677888888888886443 12235789999987
No 10
>d3broa1 a.4.5.28 (A:3-137) Transcriptional regulator OEOE1854 {Oenococcus oeni [TaxId: 1247]}
Probab=22.29 E-value=38 Score=24.53 Aligned_cols=30 Identities=20% Similarity=0.180 Sum_probs=24.5
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Q 021288 279 VEMILEQILTALTYEEQKALYMKLGEILQE 308 (314)
Q Consensus 279 ~~~~~~~~~~~l~~~~q~~l~~~l~~~~~~ 308 (314)
.+.....+...+++||+..+.+.|.++++|
T Consensus 106 ~~~~~~~~~~~l~~ee~~~~~~~L~~l~~N 135 (135)
T d3broa1 106 MDSDQSQMTSGLNKEEVVFLEKILKRMIES 135 (135)
T ss_dssp HHHHHHHHTTTCCHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHcC
Confidence 455666667789999999999999998765
No 11
>d3deua1 a.4.5.28 (A:2-141) Transcriptional regulator SlyA {Salmonella typhimurium [TaxId: 90371]}
Probab=21.09 E-value=55 Score=23.75 Aligned_cols=29 Identities=17% Similarity=0.235 Sum_probs=23.1
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Q 021288 280 EMILEQILTALTYEEQKALYMKLGEILQE 308 (314)
Q Consensus 280 ~~~~~~~~~~l~~~~q~~l~~~l~~~~~~ 308 (314)
+.....+...+++||+.++.+.|.++.+|
T Consensus 108 ~~~~~~~~~~l~~ee~~~~~~~L~~i~~n 136 (140)
T d3deua1 108 HKTRGEILAGISSEEIELLIKLIAKLEHN 136 (140)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHHHHH
Confidence 45566667789999999999998887654
Done!