Query 021290
Match_columns 314
No_of_seqs 186 out of 577
Neff 3.9
Searched_HMMs 46136
Date Fri Mar 29 09:05:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021290.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/021290hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02227 fructose-bisphosphate 100.0 3E-132 6E-137 959.4 27.8 307 1-310 1-311 (399)
2 PLN02425 probable fructose-bis 100.0 2E-130 3E-135 946.2 28.3 302 1-310 1-302 (390)
3 KOG1557 Fructose-biphosphate a 100.0 4E-127 8E-132 904.0 24.5 265 49-313 10-275 (363)
4 PLN02455 fructose-bisphosphate 100.0 5E-125 1E-129 901.2 26.8 263 47-310 4-267 (358)
5 cd00948 FBP_aldolase_I_a Fruct 100.0 2E-123 5E-128 884.1 26.8 258 53-310 2-260 (330)
6 PTZ00019 fructose-bisphosphate 100.0 4E-123 9E-128 888.3 26.9 261 50-310 2-265 (355)
7 PF00274 Glycolytic: Fructose- 100.0 4E-112 9E-117 815.4 19.9 257 54-310 1-258 (348)
8 cd00344 FBP_aldolase_I Fructos 100.0 1E-110 2E-115 799.3 25.0 258 53-310 2-261 (328)
9 COG3588 Fructose-1,6-bisphosph 100.0 5.2E-98 1E-102 702.7 18.5 257 53-310 3-261 (332)
10 PRK05377 fructose-1,6-bisphosp 100.0 6.3E-73 1.4E-77 531.4 18.2 215 64-310 11-241 (296)
11 cd00949 FBP_aldolase_I_bact Fr 100.0 3.4E-67 7.3E-72 492.1 17.3 205 64-278 8-228 (292)
12 PRK12399 tagatose 1,6-diphosph 95.1 0.88 1.9E-05 45.1 14.9 217 61-311 11-249 (324)
13 TIGR01232 lacD tagatose 1,6-di 95.0 0.91 2E-05 45.0 14.9 221 60-311 11-250 (325)
14 PRK04161 tagatose 1,6-diphosph 94.3 1.6 3.5E-05 43.3 14.6 220 60-311 12-251 (329)
15 PRK12858 tagatose 1,6-diphosph 79.6 69 0.0015 31.9 14.3 180 65-271 17-208 (340)
16 cd07941 DRE_TIM_LeuA3 Desulfob 52.1 1E+02 0.0022 29.0 8.9 82 197-300 113-195 (273)
17 PF01261 AP_endonuc_2: Xylose 51.3 1.1E+02 0.0023 25.8 8.1 114 131-245 31-153 (213)
18 cd00532 MGS-like MGS-like doma 48.9 59 0.0013 26.5 6.0 83 50-141 9-100 (112)
19 PRK11303 DNA-binding transcrip 45.0 2.5E+02 0.0053 25.7 13.5 166 109-296 115-306 (328)
20 PF15608 PELOTA_1: PELOTA RNA 43.7 23 0.00049 29.9 2.8 37 247-301 22-58 (100)
21 cd06287 PBP1_LacI_like_8 Ligan 35.9 3.3E+02 0.0072 24.6 14.3 167 109-296 54-246 (269)
22 smart00832 C8 C8 domain. This 32.7 35 0.00076 26.5 2.1 17 205-221 49-65 (76)
23 PF08742 C8: C8 domain; Inter 31.2 39 0.00084 25.4 2.1 18 205-222 47-64 (74)
24 PF11285 DUF3086: Protein of u 29.9 34 0.00074 33.5 2.0 60 83-150 189-255 (283)
25 PF10058 DUF2296: Predicted in 28.6 7 0.00015 29.2 -2.3 20 210-229 20-43 (54)
26 cd06274 PBP1_FruR Ligand bindi 25.6 4.6E+02 0.0099 22.9 9.6 167 109-298 53-248 (264)
27 cd00635 PLPDE_III_YBL036c_like 25.5 3.2E+02 0.0069 24.6 7.3 86 141-237 117-204 (222)
28 TIGR00542 hxl6Piso_put hexulos 24.1 5.6E+02 0.012 23.5 9.0 89 132-227 57-154 (279)
29 TIGR01227 hutG formimidoylglut 23.0 3.5E+02 0.0075 26.0 7.4 88 141-240 38-127 (307)
30 PRK06105 aminotransferase; Pro 22.8 1.6E+02 0.0035 29.9 5.3 44 214-257 408-457 (460)
31 cd01422 MGS Methylglyoxal synt 22.7 2.1E+02 0.0045 23.8 5.1 84 49-141 8-102 (115)
32 PRK10014 DNA-binding transcrip 22.4 6.1E+02 0.013 23.3 10.3 166 109-296 118-320 (342)
33 COG2861 Uncharacterized protei 21.7 3E+02 0.0066 26.8 6.6 57 192-263 183-239 (250)
34 COG1129 MglA ABC-type sugar tr 21.3 92 0.002 32.9 3.3 30 51-81 149-178 (500)
35 PF01386 Ribosomal_L25p: Ribos 20.3 95 0.0021 24.7 2.6 31 124-154 5-35 (88)
No 1
>PLN02227 fructose-bisphosphate aldolase I
Probab=100.00 E-value=2.8e-132 Score=959.40 Aligned_cols=307 Identities=84% Similarity=1.286 Sum_probs=294.4
Q ss_pred ChhhhhhhhccCCccccchhhhhccc--ccccc-ccccCCCCCCcccccc-ccchHHHHHHHHHHhcCCCCceEeecCCC
Q 021290 1 MASASASLLKSSSPVLDKSEWVKGQA--IRQST-VSVRSLPSGPSSLTIR-AGSYADELVKTAKTVASPGRGILAMDESN 76 (314)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~-~~~~~~~~~~~~~~~~-~~~~~~eL~~tA~~i~a~GKGIlA~DES~ 76 (314)
|||++++.+|. +++ +|+|++||+ ++|+| .+..+..+.+++++++ ..+|++||.+||++|++|||||||+|||+
T Consensus 1 ~~~~~~~~~~~-~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eL~~tA~~ivapGKGIlAaDES~ 77 (399)
T PLN02227 1 MASSTATMLKA-SPV--KSDWVKGQSLLLRQPSSVSAIRSHVAPSALTVRAASAYADELVKTAKTIASPGHGIMAMDESN 77 (399)
T ss_pred CCcccccccCC-Ccc--hhhhhcccceeecCCCcceeeeecccCccceEeecHHHHHHHHHHHHHHhCCCCceeeeccCc
Confidence 89999999987 555 899999999 67754 4444456778888888 45799999999999999999999999999
Q ss_pred cchHHHhhhcCCCCChhhhhhhhhhcccCCCCCCceeEEeeccccccccccCCcchHHHHHhCCceeeeecCCCcccCCC
Q 021290 77 ATCGKRLASIGLENTEANRQAYRTLLVTAPGLGQYISGAILFEETLYQSTTDGKKMVDVLVEQNIVPGIKVDKGLVPLAG 156 (314)
Q Consensus 77 gt~~Krl~~iGvente~nr~~yR~ll~ttp~l~~~IsGvILfeETl~q~~~dG~~~~~~L~~kGIvPGIKVDkGl~pl~g 156 (314)
|||+|||++|||||||+|||+||++|||+|+|++||||||||||||||+++||+||+|+|+++|||||||||||++|++|
T Consensus 78 gT~gKRl~~iGVenteenRr~yR~lLfttp~~~~~IsGvILFeETl~Q~~~dG~pf~d~L~~~GIVPGIKVDKGl~~l~g 157 (399)
T PLN02227 78 ATCGKRLASIGLENTEANRQAYRTLLVSAPGLGQYISGAILFEETLYQSTTDGKKMVDVLVEQNIVPGIKVDKGLVPLVG 157 (399)
T ss_pred ChhHHHHHHcCCCCchHHHHHHHHhcccCcchhcceEEEEcchhhccCcCcCCcCHHHHHHHCCCeeeEEcCCCcccCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCccCChhHHHHHHHHHhhCCCcccccceeeecCCCcCHHHHHHHHHHHHHHHHHHHhCCceeeecceecCCCCcCh
Q 021290 157 SNDESWCQGLDGLASRTAAYYQQGARFAKWRTVVSIPNGPSALAVREAAWGLARYAAIAQDNGLVPIVEPEILLDGDHGI 236 (314)
Q Consensus 157 ~~gE~~t~GLDgL~~R~~~y~~~Ga~FAKWRsVi~i~~~Ps~~aI~~na~~LAryAaicQ~~GLVPIVEPEVl~dgdH~i 236 (314)
+++|++|||||||++||++||++|||||||||||+|++.||+.+|++|||.|||||+|||++||||||||||||||||||
T Consensus 158 ~~~e~~tqGLDgL~~R~~~Y~~~GarFAKWRsVikI~~~PS~~aI~~na~~LArYA~icQ~~GLVPIVEPEVliDGdH~i 237 (399)
T PLN02227 158 SYDESWCQGLDGLASRTAAYYQQGARFAKWRTVVSIPNGPSALAVKEAAWGLARYAAISQDSGLVPIVEPEIMLDGEHGI 237 (399)
T ss_pred CCCCccCCChHHHHHHHHHHHHcCCceeehheeeccCCCCCHHHHHHHHHHHHHHHHHHHHcCCCceecceecCCCCcCH
Confidence 99999999999999999999999999999999999998899999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHhCCccccccccccccccCCCCCCCCCChHHHHHHHHHHhhccCCCCCCceEEeec
Q 021290 237 DRTFEVAQKVWAEVFFYLAENNVMFEGILLKPSMVTPGAECKEKATPQQVAEYTLKLLHRRIPPAVPGIMAILV 310 (314)
Q Consensus 237 ~~c~~vte~VL~~vf~~L~~~~V~lEG~lLKPnMV~pG~~~~~~~s~eeVA~~Tv~~L~rtVP~avPGI~FLS~ 310 (314)
++|++|||+||++||++|++|||+|||||||||||+||++|+.+++|||||++||++|+||||+|||||+|||-
T Consensus 238 e~c~~Vte~VL~~vfkaL~~h~V~lEG~LLKPnMV~pG~~~~~~~s~e~VA~~Tv~~L~rtVP~AVPGI~FLSG 311 (399)
T PLN02227 238 DRTYDVAEKVWAEVFFYLAQNNVMFEGILLKPSMVTPGAEATDRATPEQVASYTLKLLRNRIPPAVPGIMFLSG 311 (399)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCceeecceeccceeccCccCCCcCCHHHHHHHHHHHHHhcCCCCCCeeeecCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999994
No 2
>PLN02425 probable fructose-bisphosphate aldolase
Probab=100.00 E-value=1.6e-130 Score=946.17 Aligned_cols=302 Identities=77% Similarity=1.207 Sum_probs=290.8
Q ss_pred ChhhhhhhhccCCccccchhhhhccccccccccccCCCCCCccccccccchHHHHHHHHHHhcCCCCceEeecCCCcchH
Q 021290 1 MASASASLLKSSSPVLDKSEWVKGQAIRQSTVSVRSLPSGPSSLTIRAGSYADELVKTAKTVASPGRGILAMDESNATCG 80 (314)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eL~~tA~~i~a~GKGIlA~DES~gt~~ 80 (314)
||++ +++|. ++. +|+|++||+++|++.++ ...+++++.+..+|++||.+||++|++|||||||+|||+|||+
T Consensus 1 ~~~~--~~~~~-~~~--~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~eL~~tA~~i~apGKGIlA~DES~gT~~ 72 (390)
T PLN02425 1 MASA--SFVKL-NAA--SSTWIGQRSFGQRSSSS---STRRVSFRIRAGSYSDELVQTAKSVASPGRGILAIDESNATCG 72 (390)
T ss_pred Cccc--hhccC-Ccc--cchhhcCcccccCCCcc---cccccccccccHHHHHHHHHHHHHHhCCCCceEeeccccCchh
Confidence 5665 58887 544 79999999999976543 3557889999999999999999999999999999999999999
Q ss_pred HHhhhcCCCCChhhhhhhhhhcccCCCCCCceeEEeeccccccccccCCcchHHHHHhCCceeeeecCCCcccCCCCCCC
Q 021290 81 KRLASIGLENTEANRQAYRTLLVTAPGLGQYISGAILFEETLYQSTTDGKKMVDVLVEQNIVPGIKVDKGLVPLAGSNDE 160 (314)
Q Consensus 81 Krl~~iGvente~nr~~yR~ll~ttp~l~~~IsGvILfeETl~q~~~dG~~~~~~L~~kGIvPGIKVDkGl~pl~g~~gE 160 (314)
|||++|||||||+|||+||+||||+|+|++||||||||||||||+++||+||+|+|+++|||||||||||++|++|+++|
T Consensus 73 Krl~~iGVente~nrr~yR~lLfttp~~~~~IsGvILFeETl~q~~~dG~p~~d~L~~~GIVPGIKVDkGl~~l~G~~~e 152 (390)
T PLN02425 73 KRLASIGLDNTETNRQAYRQLLLTTPGLGEYISGAILFEETLYQSTTDGKKFVDCLRDQNIVPGIKVDKGLVPLPGSNNE 152 (390)
T ss_pred HHHHHcCCCCchhhhHHHHhhhccCcchhhceEEEEcchHhccccccCCcCHHHHHHHCCceeeEEecCCCCcCCCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccCChhHHHHHHHHHhhCCCcccccceeeecCCCcCHHHHHHHHHHHHHHHHHHHhCCceeeecceecCCCCcChhHHH
Q 021290 161 SWCQGLDGLASRTAAYYQQGARFAKWRTVVSIPNGPSALAVREAAWGLARYAAIAQDNGLVPIVEPEILLDGDHGIDRTF 240 (314)
Q Consensus 161 ~~t~GLDgL~~R~~~y~~~Ga~FAKWRsVi~i~~~Ps~~aI~~na~~LAryAaicQ~~GLVPIVEPEVl~dgdH~i~~c~ 240 (314)
++|||||||++||++||++||||||||+||+|++.||+.+|++|||.|||||+|||++||||||||||||||||||++|+
T Consensus 153 ~~t~GLDgL~~R~~~y~~~GarFAKWRsViki~~~Ps~~aI~~na~~LArYA~icQ~~GLVPIVEPEVlidGdH~ie~c~ 232 (390)
T PLN02425 153 SWCQGLDGLASRSAEYYKQGARFAKWRTVVSIPCGPSALAVKEAAWGLARYAAISQDNGLVPIVEPEILLDGDHPIERTL 232 (390)
T ss_pred ccCCChHHHHHHHHHHHHcCCceeehheeeccCCCCCHHHHHHHHHHHHHHHHHHHHcCCCceecceecCCCCcCHHHHH
Confidence 99999999999999999999999999999999988999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhCCccccccccccccccCCCCCCCCCChHHHHHHHHHHhhccCCCCCCceEEeec
Q 021290 241 EVAQKVWAEVFFYLAENNVMFEGILLKPSMVTPGAECKEKATPQQVAEYTLKLLHRRIPPAVPGIMAILV 310 (314)
Q Consensus 241 ~vte~VL~~vf~~L~~~~V~lEG~lLKPnMV~pG~~~~~~~s~eeVA~~Tv~~L~rtVP~avPGI~FLS~ 310 (314)
+|||+||++||++|++|||+|||||||||||+||++|+.+++|||||++||++|+||||+|||||+|||-
T Consensus 233 ~Vte~VL~~vf~aL~~~~V~lEG~LLKPnMV~pG~~~~~~~s~e~VA~~Tv~~l~rtVP~AVPGI~FLSG 302 (390)
T PLN02425 233 EVAEKVWSEVFFYLAQNNVLFEGILLKPSMVTPGAEHKEKASPETIAKYTLTMLRRRVPPAVPGIMFLSG 302 (390)
T ss_pred HHHHHHHHHHHHHHHHcCceeecceecccccccCCcCCCCCCHHHHHHHHHHHHHhcCCCCCCcceeccC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999994
No 3
>KOG1557 consensus Fructose-biphosphate aldolase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=3.6e-127 Score=904.01 Aligned_cols=265 Identities=63% Similarity=0.952 Sum_probs=261.2
Q ss_pred cchHHHHHHHHHHhcCCCCceEeecCCCcchHHHhhhcCCCCChhhhhhhhhhcccCCCCCCceeEEeeccccccccccC
Q 021290 49 GSYADELVKTAKTVASPGRGILAMDESNATCGKRLASIGLENTEANRQAYRTLLVTAPGLGQYISGAILFEETLYQSTTD 128 (314)
Q Consensus 49 ~~~~~eL~~tA~~i~a~GKGIlA~DES~gt~~Krl~~iGvente~nr~~yR~ll~ttp~l~~~IsGvILfeETl~q~~~d 128 (314)
..+++||.+||++|++|||||||+|||+|||+|||++|||||||+|||+|||+|||+|++++||||||||||||||+++|
T Consensus 10 ~~~~~EL~~~A~~I~~pGkGILAaDES~~T~gkRl~sIgveNtE~NRr~yRelLfttpg~~~~IsGvILfeETlyQkt~d 89 (363)
T KOG1557|consen 10 KAQKDELIKIAKKIVTPGKGILAADESTGTIGKRLASIGVENTEENRRAYRELLFTTPGLNQYISGVILFEETLYQKTDD 89 (363)
T ss_pred HHHHHHHHHHHHHhcCCCCceEeecCCcchHHHHHHhcCCcccHHHHHHHHHHhhcCCChhhccceEEeeeehheeeCCC
Confidence 46888999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcchHHHHHhCCceeeeecCCCcccCCCCCCCCccCChhHHHHHHHHHhhCCCcccccceeeecCC-CcCHHHHHHHHHH
Q 021290 129 GKKMVDVLVEQNIVPGIKVDKGLVPLAGSNDESWCQGLDGLASRTAAYYQQGARFAKWRTVVSIPN-GPSALAVREAAWG 207 (314)
Q Consensus 129 G~~~~~~L~~kGIvPGIKVDkGl~pl~g~~gE~~t~GLDgL~~R~~~y~~~Ga~FAKWRsVi~i~~-~Ps~~aI~~na~~ 207 (314)
|+||+|+|+++|||||||||||++||+|++||++|||||||.+||++||++||+|||||||++|.+ +||.+||.|||+.
T Consensus 90 Gkpf~~~L~~~givpGIKvDKG~vplaGt~~E~ttqGLD~L~~Rca~y~k~Ga~FAKWR~vlki~~~~PS~lai~EnA~~ 169 (363)
T KOG1557|consen 90 GKPFVDLLKEKGIVPGIKVDKGLVPLAGTNGETTTQGLDGLAERCAQYYKDGARFAKWRAVLKIGDGTPSALAIKENANG 169 (363)
T ss_pred CCCHHHHHHhcCCccceEecCCcccccccCCcceeechhhHHHHHHHHHHcCCchhheeEEEEecCCCchHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999965 5999999999999
Q ss_pred HHHHHHHHHhCCceeeecceecCCCCcChhHHHHHHHHHHHHHHHHHHhCCccccccccccccccCCCCCCCCCChHHHH
Q 021290 208 LARYAAIAQDNGLVPIVEPEILLDGDHGIDRTFEVAQKVWAEVFFYLAENNVMFEGILLKPSMVTPGAECKEKATPQQVA 287 (314)
Q Consensus 208 LAryAaicQ~~GLVPIVEPEVl~dgdH~i~~c~~vte~VL~~vf~~L~~~~V~lEG~lLKPnMV~pG~~~~~~~s~eeVA 287 (314)
|||||+|||+||||||||||||.||||||+||++|||+||++||++|++|||||||+||||||||||++|++|++||+||
T Consensus 170 LARYA~IcQ~nGLVPIVEPEil~dGdHdi~r~~~VtE~Vla~vykaL~~hhV~lEGtLLKPnMVTpG~~s~~K~tpe~iA 249 (363)
T KOG1557|consen 170 LARYASICQQNGLVPIVEPEILPDGDHDIKRCQYVTEKVLAAVYKALNDHHVYLEGTLLKPNMVTPGAESTEKYTPEQIA 249 (363)
T ss_pred HHHHHHHHhhcCcccccccccccCCcccHHHHHHHHHHHHHHHHHHhhhcceeeeceecccccccCCccccccCCHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhccCCCCCCceEEeecccc
Q 021290 288 EYTLKLLHRRIPPAVPGIMAILVWWA 313 (314)
Q Consensus 288 ~~Tv~~L~rtVP~avPGI~FLS~~~~ 313 (314)
++||++|+||||||||||+|||.||.
T Consensus 250 ~~TvtaLrrtVP~AVPGI~FLSGgqs 275 (363)
T KOG1557|consen 250 LATVTALRRTVPAAVPGIVFLSGGQS 275 (363)
T ss_pred HHHHHHHHhcCCCCCceEEEecCCcc
Confidence 99999999999999999999999984
No 4
>PLN02455 fructose-bisphosphate aldolase
Probab=100.00 E-value=5.2e-125 Score=901.23 Aligned_cols=263 Identities=60% Similarity=0.948 Sum_probs=257.7
Q ss_pred cccchHHHHHHHHHHhcCCCCceEeecCCCcchHHHhhhcCCCCChhhhhhhhhhcccCCCCCCceeEEeeccccccccc
Q 021290 47 RAGSYADELVKTAKTVASPGRGILAMDESNATCGKRLASIGLENTEANRQAYRTLLVTAPGLGQYISGAILFEETLYQST 126 (314)
Q Consensus 47 ~~~~~~~eL~~tA~~i~a~GKGIlA~DES~gt~~Krl~~iGvente~nr~~yR~ll~ttp~l~~~IsGvILfeETl~q~~ 126 (314)
+..+|++||.+||++|++|||||||+|||+|||+|||++|||||||+|||+||++|||+|+|++||||||||||||||++
T Consensus 4 ~~~~~~~eL~~tA~~iva~GKGiLAADES~gT~gKRl~~iGVente~nRr~yR~lLfttp~~~~~IsGvILfeETl~Q~~ 83 (358)
T PLN02455 4 FVGKYADELIKNAKYIATPGKGILAADESTGTIGKRLASINVENVESNRQALRELLFTAPGALQYLSGVILFEETLYQKT 83 (358)
T ss_pred ccHHHHHHHHHHHHHHhCCCCeeEEeccCCCchhhHHHhcCCCCchHHHHHHHHhhccCCcccccEEEEEcchHhccccc
Confidence 34679999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCcchHHHHHhCCceeeeecCCCcccCCCCCCCCccCChhHHHHHHHHHhhCCCcccccceeeecCC-CcCHHHHHHHH
Q 021290 127 TDGKKMVDVLVEQNIVPGIKVDKGLVPLAGSNDESWCQGLDGLASRTAAYYQQGARFAKWRTVVSIPN-GPSALAVREAA 205 (314)
Q Consensus 127 ~dG~~~~~~L~~kGIvPGIKVDkGl~pl~g~~gE~~t~GLDgL~~R~~~y~~~Ga~FAKWRsVi~i~~-~Ps~~aI~~na 205 (314)
+||+||+|+|+++|||||||||||++|++|++||++|||||||++||++||++|||||||||||+|.+ .||..||.+||
T Consensus 84 ~dG~p~~~~L~~~GIvPGIKVDkGl~~l~g~~ge~~t~GLDgL~~R~~~y~~~GarFAKWRsVikI~~~~PS~~ai~~na 163 (358)
T PLN02455 84 SDGKPFVDVLKENGVLPGIKVDKGTVELAGTNGETTTQGLDGLGARCAKYYEAGARFAKWRAVLKIGPTEPSELAIQENA 163 (358)
T ss_pred cCCcCHHHHHHHCCCeeeEEecCCccccCCCCCCccCcchHHHHHHHHHHHhcCCceeeceeeeecCCCCCCHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999965 59999999999
Q ss_pred HHHHHHHHHHHhCCceeeecceecCCCCcChhHHHHHHHHHHHHHHHHHHhCCccccccccccccccCCCCCCCCCChHH
Q 021290 206 WGLARYAAIAQDNGLVPIVEPEILLDGDHGIDRTFEVAQKVWAEVFFYLAENNVMFEGILLKPSMVTPGAECKEKATPQQ 285 (314)
Q Consensus 206 ~~LAryAaicQ~~GLVPIVEPEVl~dgdH~i~~c~~vte~VL~~vf~~L~~~~V~lEG~lLKPnMV~pG~~~~~~~s~ee 285 (314)
+.|||||+|||++||||||||||||||||||++|++|||+||++||++|++|||+|||||||||||+||++|+.+ ||||
T Consensus 164 ~~LArYA~icQ~~GlVPIVEPEvL~dGdH~i~~c~~Vte~Vl~~vf~aL~~~~V~lEG~LLKPnMV~pG~~~~~~-s~e~ 242 (358)
T PLN02455 164 QGLARYAIICQENGLVPIVEPEILVDGSHDIKKCAAVTERVLAACYKALNDHHVLLEGTLLKPNMVTPGSDSPKV-SPEV 242 (358)
T ss_pred HHHHHHHHHHHHcCCCceecccccCCCCCCHHHHHHHHHHHHHHHHHHHHHcCcccccceeccccccCCcccCcC-CHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999766 9999
Q ss_pred HHHHHHHHhhccCCCCCCceEEeec
Q 021290 286 VAEYTLKLLHRRIPPAVPGIMAILV 310 (314)
Q Consensus 286 VA~~Tv~~L~rtVP~avPGI~FLS~ 310 (314)
||++||++|+||||+|||||+|||-
T Consensus 243 vA~~Tv~~l~rtVP~avpGI~FLSG 267 (358)
T PLN02455 243 IAEYTVRALQRTVPPAVPGIVFLSG 267 (358)
T ss_pred HHHHHHHHHHhhCCccCCcceecCC
Confidence 9999999999999999999999994
No 5
>cd00948 FBP_aldolase_I_a Fructose-1,6-bisphosphate aldolase. The enzyme catalyzes the cleavage of fructose 1,6-bisphosphate to glyceraldehyde 3-phosphate and dihydroxyacetone phosphate (DHAP). This family includes proteins found in vertebrates, plants, and bacterial plant pathogens. Mutations in the aldolase genes in humans cause hemolytic anemia and hereditary fructose intolerance. The enzyme is a member of the class I aldolase family, which utilizes covalent catalysis through a Schiff base formed between a lysine residue of the enzyme and ketose substrates.
Probab=100.00 E-value=2.3e-123 Score=884.05 Aligned_cols=258 Identities=67% Similarity=1.075 Sum_probs=255.3
Q ss_pred HHHHHHHHHhcCCCCceEeecCCCcchHHHhhhcCCCCChhhhhhhhhhcccCCCCCCceeEEeeccccccccccCCcch
Q 021290 53 DELVKTAKTVASPGRGILAMDESNATCGKRLASIGLENTEANRQAYRTLLVTAPGLGQYISGAILFEETLYQSTTDGKKM 132 (314)
Q Consensus 53 ~eL~~tA~~i~a~GKGIlA~DES~gt~~Krl~~iGvente~nr~~yR~ll~ttp~l~~~IsGvILfeETl~q~~~dG~~~ 132 (314)
+||.+||++|++|||||||+|||+|||+|||++|||||||+|||+||++|||+|+|++||||||||||||||+++||+||
T Consensus 2 ~eL~~tA~~iv~~GKGilAADES~gT~~Krl~~iGvente~nrr~yR~llft~p~~~~~IsGvILfeeTl~q~~~dG~p~ 81 (330)
T cd00948 2 EELIKTAKAIVAPGKGILAADESTGTIGKRFASIGVENTEENRRAYRELLFTTPGLGQYISGVILFEETLYQKTDDGKPF 81 (330)
T ss_pred hHHHHHHHHHhCCCCeEEEecCCCCchHHHHHHcCCCCchHHHHHHHHhhccCCCccccEEEEECChhhccccccCCcCh
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhCCceeeeecCCCcccCCCCCCCCccCChhHHHHHHHHHhhCCCcccccceeeecCCC-cCHHHHHHHHHHHHHH
Q 021290 133 VDVLVEQNIVPGIKVDKGLVPLAGSNDESWCQGLDGLASRTAAYYQQGARFAKWRTVVSIPNG-PSALAVREAAWGLARY 211 (314)
Q Consensus 133 ~~~L~~kGIvPGIKVDkGl~pl~g~~gE~~t~GLDgL~~R~~~y~~~Ga~FAKWRsVi~i~~~-Ps~~aI~~na~~LAry 211 (314)
+|+|+++|||||||||||++|++|+++|++|||||||++||++||++|||||||||||+|++. ||..+|.+|++.||||
T Consensus 82 ~~~L~~~GIvPgIKVDkGl~~l~g~~~e~~t~GLD~L~~R~~~y~~~GarFAKwRsVi~i~~~~PS~~~I~~na~~Lary 161 (330)
T cd00948 82 VDILKEKGIVPGIKVDKGLVPLAGTDGETTTQGLDGLAERCAKYYKQGARFAKWRAVLKIGNGTPSELAIKENAHGLARY 161 (330)
T ss_pred HHHHHHCCCeeeEEeCCCccccCCCCCCccCcChHHHHHHHHHHhhcCCcceeeheeeeccCCCCcHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999765 9999999999999999
Q ss_pred HHHHHhCCceeeecceecCCCCcChhHHHHHHHHHHHHHHHHHHhCCccccccccccccccCCCCCCCCCChHHHHHHHH
Q 021290 212 AAIAQDNGLVPIVEPEILLDGDHGIDRTFEVAQKVWAEVFFYLAENNVMFEGILLKPSMVTPGAECKEKATPQQVAEYTL 291 (314)
Q Consensus 212 AaicQ~~GLVPIVEPEVl~dgdH~i~~c~~vte~VL~~vf~~L~~~~V~lEG~lLKPnMV~pG~~~~~~~s~eeVA~~Tv 291 (314)
|+|||++||||||||||||||||||++|++|||+||++||++|++|||+|||+|||||||+||++|+.+++|||||++||
T Consensus 162 A~icq~~GLVPIVEPEVl~dG~H~i~~c~~vte~Vl~~vf~aL~~~~V~lEG~lLKPnMV~pG~~~~~~~~~e~vA~~Tv 241 (330)
T cd00948 162 AAICQENGLVPIVEPEVLMDGDHDIERCQEVTEKVLAAVYKALNDHHVLLEGTLLKPNMVTPGADCKKKASPEEVAEYTV 241 (330)
T ss_pred HHHHHHcCCCceecccccCCCCCCHHHHHHHHHHHHHHHHHHHHHcCcccccceeccccccCCCcCCCcCCHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhccCCCCCCceEEeec
Q 021290 292 KLLHRRIPPAVPGIMAILV 310 (314)
Q Consensus 292 ~~L~rtVP~avPGI~FLS~ 310 (314)
++|+||||+|||||+|||-
T Consensus 242 ~~l~rtvP~avpGI~FLSG 260 (330)
T cd00948 242 RALRRTVPAAVPGIVFLSG 260 (330)
T ss_pred HHHHhcCCccCCeeeeccC
Confidence 9999999999999999994
No 6
>PTZ00019 fructose-bisphosphate aldolase; Provisional
Probab=100.00 E-value=4e-123 Score=888.29 Aligned_cols=261 Identities=61% Similarity=0.991 Sum_probs=257.6
Q ss_pred chHHHHHHHHHHhcCCCCceEeecCCCcchHHHhhhcCCCCChhhhhhhhhhcccCCCCCCceeEEeeccccccccccCC
Q 021290 50 SYADELVKTAKTVASPGRGILAMDESNATCGKRLASIGLENTEANRQAYRTLLVTAPGLGQYISGAILFEETLYQSTTDG 129 (314)
Q Consensus 50 ~~~~eL~~tA~~i~a~GKGIlA~DES~gt~~Krl~~iGvente~nr~~yR~ll~ttp~l~~~IsGvILfeETl~q~~~dG 129 (314)
+|++||.+||++|++|||||||+|||+|||+|||++|||||||+|||+||+||||+|+|++||||||||||||||+++||
T Consensus 2 ~~~~eL~~tA~~i~~~GKGilAADES~gT~~Krl~~iGvente~nrr~~R~llfttp~~~~~IsGvILfeETl~q~~~dG 81 (355)
T PTZ00019 2 EYAKELAETAKKIAAPGKGILAADESTGTIKKRFDPIGLENTEENRRAYRELLFTTEGLEQYISGVILFEETVYQKAPSG 81 (355)
T ss_pred cHHHHHHHHHHHHhCCCCeEEEeccCCCchhHHHHHcCCCCchHHHHHHHHhhccCcchhhceEEEEcchHhccccccCC
Confidence 58899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cchHHHHHhCCceeeeecCCCcccCCCCCCCCccCChhHHHHHHHHHhhCCCcccccceeeecC--CC-cCHHHHHHHHH
Q 021290 130 KKMVDVLVEQNIVPGIKVDKGLVPLAGSNDESWCQGLDGLASRTAAYYQQGARFAKWRTVVSIP--NG-PSALAVREAAW 206 (314)
Q Consensus 130 ~~~~~~L~~kGIvPGIKVDkGl~pl~g~~gE~~t~GLDgL~~R~~~y~~~Ga~FAKWRsVi~i~--~~-Ps~~aI~~na~ 206 (314)
+||+|+|+++|||||||||||++|++|+++|++|||||||++||++||++|||||||||||+|+ ++ ||..||.+|++
T Consensus 82 ~p~~~~L~~~GIvPgIKVDkGl~~l~G~~~e~~t~GLD~L~~R~~~y~~~GarFAKwRsVi~i~~~~g~PS~~aI~~na~ 161 (355)
T PTZ00019 82 KTFVELLKEKGIVPGIKVDKGLVTLPGTDGETSTQGLDGLAERAKKYYKAGARFAKWRAVLKIDPAKGKPSELAIQENAW 161 (355)
T ss_pred CChHHHHHHCCCeeeEEcCCCccCCCCCCCCccCcChHHHHHHHHHHHhcCCceeeeeeeeeecCCCCCCcHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999997 44 99999999999
Q ss_pred HHHHHHHHHHhCCceeeecceecCCCCcChhHHHHHHHHHHHHHHHHHHhCCccccccccccccccCCCCCCCCCChHHH
Q 021290 207 GLARYAAIAQDNGLVPIVEPEILLDGDHGIDRTFEVAQKVWAEVFFYLAENNVMFEGILLKPSMVTPGAECKEKATPQQV 286 (314)
Q Consensus 207 ~LAryAaicQ~~GLVPIVEPEVl~dgdH~i~~c~~vte~VL~~vf~~L~~~~V~lEG~lLKPnMV~pG~~~~~~~s~eeV 286 (314)
.|||||+|||++||||||||||||||||||++|++|||+||++||++|++|||+|||||||||||+||++|+.+++||||
T Consensus 162 ~LaryA~icq~~GLVPIVEPEVlidG~H~i~~c~~vte~Vl~~v~~aL~~~~V~lEG~lLKPnMV~pG~~~~~~~s~e~v 241 (355)
T PTZ00019 162 TLARYAAICQENGLVPIVEPEILIDGSHSIEVCQKVTEKVLAEVFKALNDHGVLLEGCLLKPNMVTPGSDCGVKATPQEV 241 (355)
T ss_pred HHHHHHHHHHHcCCCceecccccCCCCCCHHHHHHHHHHHHHHHHHHHHHcCCeecCceeccccccCCCcCCCCCCHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhccCCCCCCceEEeec
Q 021290 287 AEYTLKLLHRRIPPAVPGIMAILV 310 (314)
Q Consensus 287 A~~Tv~~L~rtVP~avPGI~FLS~ 310 (314)
|++||++|+||||+|||||+|||-
T Consensus 242 A~~Tv~~l~rtVP~avPGI~FLSG 265 (355)
T PTZ00019 242 AFYTVRTLSRTVPPALPGVMFLSG 265 (355)
T ss_pred HHHHHHHHHhcCCccCCeeeeccC
Confidence 999999999999999999999994
No 7
>PF00274 Glycolytic: Fructose-bisphosphate aldolase class-I; InterPro: IPR000741 Fructose-bisphosphate aldolase (4.1.2.13 from EC) [, ] is a glycolytic enzyme that catalyses the reversible aldol cleavage or condensation of fructose-1,6-bisphosphate into dihydroxyacetone-phosphate and glyceraldehyde 3-phosphate. There are two classes of fructose-bisphosphate aldolases with different catalytic mechanisms: class I enzymes [] do not require a metal ion, and are characterised by the formation of a Schiff base intermediate between a highly conserved active site lysine and a substrate carbonyl group, while the class II enzymes require an active-site divalent metal ion. This entry represents the class I enzymes. In vertebrates, three forms of this enzyme are found: aldolase A is expressed in muscle, aldolase B in liver, kidney, stomach and intestine, and aldolase C in brain, heart and ovary. The different isozymes have different catalytic functions: aldolases A and C are mainly involved in glycolysis, while aldolase B is involved in both glycolysis and gluconeogenesis. Defects in aldolase B result in hereditary fructose intolerance.; GO: 0004332 fructose-bisphosphate aldolase activity, 0006096 glycolysis; PDB: 1EX5_B 6ALD_D 2QUU_B 3DFN_B 1ADO_B 3DFO_A 1ZAL_A 1J4E_C 3DFP_A 1ZAJ_B ....
Probab=100.00 E-value=4.1e-112 Score=815.37 Aligned_cols=257 Identities=60% Similarity=0.926 Sum_probs=234.2
Q ss_pred HHHHHHHHhcCCCCceEeecCCCcchHHHhhhcCCCCChhhhhhhhhhcccCCCCCCceeEEeeccccccccccCCcchH
Q 021290 54 ELVKTAKTVASPGRGILAMDESNATCGKRLASIGLENTEANRQAYRTLLVTAPGLGQYISGAILFEETLYQSTTDGKKMV 133 (314)
Q Consensus 54 eL~~tA~~i~a~GKGIlA~DES~gt~~Krl~~iGvente~nr~~yR~ll~ttp~l~~~IsGvILfeETl~q~~~dG~~~~ 133 (314)
||.+||++|++|||||||+|||+|||+|||++|||||||||||+||++|||||++++||||||||||||+|+++||+||+
T Consensus 1 eL~~ta~~~~a~gKGiLAaDES~gt~~Krl~~~Gie~te~~r~~yR~~l~tt~~~~~~IsGvILfeeTl~q~~~~G~~~~ 80 (348)
T PF00274_consen 1 ELRATARAIVAPGKGILAADESGGTIPKRLAAYGIENTEENRRAYRELLFTTPGLSEYISGVILFEETLYQKTADGKPFP 80 (348)
T ss_dssp HHHHHHHHHTGTT-EEEEE---HHHHHHHHHHTTS-CGHHHHHHHHHHHHTSGGGGGTEEEEEE-HHHHTSBETTSSBHH
T ss_pred ChHHHHHHHhCCCCcEEEecCCCccHHHHHHHcCCCCchhhHHHHHHhhhcccccccceEEEEcccchhhccccCCCChH
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhCCceeeeecCCCcccCCCCCCCCccCChhHHHHHHHHHhhCCCcccccceeeecC-CCcCHHHHHHHHHHHHHHH
Q 021290 134 DVLVEQNIVPGIKVDKGLVPLAGSNDESWCQGLDGLASRTAAYYQQGARFAKWRTVVSIP-NGPSALAVREAAWGLARYA 212 (314)
Q Consensus 134 ~~L~~kGIvPGIKVDkGl~pl~g~~gE~~t~GLDgL~~R~~~y~~~Ga~FAKWRsVi~i~-~~Ps~~aI~~na~~LAryA 212 (314)
|+|+++|||||||||||+.|++|+++|++|+|||||++||++||++||||||||+||+|. +.||..+|.+|++.|||||
T Consensus 81 ~~L~~~GIvpgIKVDkGl~~l~~~~~ek~t~GLD~L~~R~~~y~~~GarFaKwRsVi~i~~~~ps~~~I~~na~~laryA 160 (348)
T PF00274_consen 81 DYLKEKGIVPGIKVDKGLVPLPGGVQEKPTQGLDGLLERCAEYYAFGARFAKWRSVIKIGDGTPSEAAIKANAHQLARYA 160 (348)
T ss_dssp HHHHHTT-EEEEE---EEEEETTSSSEEEEETTTTHHHHHHHHHHTTEEEEEEEEEEESBTTBS-HHHHHHHHHHHHHHH
T ss_pred HHHHhcCceeeEeccCceeccccCCCceeCCCcchHHHHHHHHhhhcccceeeeeeeecCCCCCCHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999994 5699999999999999999
Q ss_pred HHHHhCCceeeecceecCCCCcChhHHHHHHHHHHHHHHHHHHhCCccccccccccccccCCCCCCCCCChHHHHHHHHH
Q 021290 213 AIAQDNGLVPIVEPEILLDGDHGIDRTFEVAQKVWAEVFFYLAENNVMFEGILLKPSMVTPGAECKEKATPQQVAEYTLK 292 (314)
Q Consensus 213 aicQ~~GLVPIVEPEVl~dgdH~i~~c~~vte~VL~~vf~~L~~~~V~lEG~lLKPnMV~pG~~~~~~~s~eeVA~~Tv~ 292 (314)
+|||++||||||||||+|||+|++++|++||++||++||++|++|+|+|||+|||||||+||.+|+.+++++|||++||+
T Consensus 161 ~icq~~GLVPIVEPEVli~g~h~~~~~~~vt~~vl~~v~~~l~~~~V~Leg~llKpnmv~pG~~~~~~~~~~~vA~~T~~ 240 (348)
T PF00274_consen 161 AICQEAGLVPIVEPEVLIDGDHDIERCAEVTEAVLAAVFKALNDHGVMLEGTLLKPNMVTPGKDHPKKASPEEVAEATVR 240 (348)
T ss_dssp HHHHHTT-EEEEEEEEESSSSTHHHHHHHHHHHHHHHHHHHHHHTTEEGGGEEEEEB-S---TTSSS---HHHHHHHHHH
T ss_pred HHHHhccCccccccccccCCCchHHHHHHHHHHHHHHHHHhhccCEEEeccccccccceeecccCCCCCCHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhccCCCCCCceEEeec
Q 021290 293 LLHRRIPPAVPGIMAILV 310 (314)
Q Consensus 293 ~L~rtVP~avPGI~FLS~ 310 (314)
+|+|+||++||||+|||-
T Consensus 241 ~l~~~vP~aVpgIvFLSG 258 (348)
T PF00274_consen 241 ALRRTVPAAVPGIVFLSG 258 (348)
T ss_dssp HHHHHSBTTSSEEEEB-T
T ss_pred HHHHhcccccceeEecCC
Confidence 999999999999999994
No 8
>cd00344 FBP_aldolase_I Fructose-bisphosphate aldolase class I. Fructose-1,6-bisphosphate aldolase is an enzyme of the glycolytic and gluconeogenic pathways found in vertebrates, plants, and bacteria. The enzyme catalyzes the cleavage of fructose 1,6-bisphosphate to glyceraldehyde 3-phosphate and dihydroxyacetone phosphate (DHAP). Mutations in the aldolase genes in humans cause hemolytic anemia and hereditary fructose intolerance. The enzyme is a member of the class I aldolase family, which utilizes covalent catalysis through a Schiff base formed between a lysine residue of the enzyme and ketose substrates. Although structurally similar, the class II aldolases use a different mechanism and are believed to have an independent evolutionary origin.
Probab=100.00 E-value=1.1e-110 Score=799.34 Aligned_cols=258 Identities=52% Similarity=0.803 Sum_probs=254.7
Q ss_pred HHHHHHHHHhcCCCCceEeecCCCcchHHHhhhcCCCCChhhhhhhhhhcccC-CCCCCceeEEeeccccccccccCCcc
Q 021290 53 DELVKTAKTVASPGRGILAMDESNATCGKRLASIGLENTEANRQAYRTLLVTA-PGLGQYISGAILFEETLYQSTTDGKK 131 (314)
Q Consensus 53 ~eL~~tA~~i~a~GKGIlA~DES~gt~~Krl~~iGvente~nr~~yR~ll~tt-p~l~~~IsGvILfeETl~q~~~dG~~ 131 (314)
+||.+||++|++|||||||+|||+||++|||..+|+||||+|||+||++|||+ |++++||||||||||||||++.||++
T Consensus 2 ~eL~~~a~~~~~~GKGilAAdEssgt~~kR~~~i~~enteenrr~~r~ll~~~~~~i~~~IsGvILfeeTl~q~~~~g~~ 81 (328)
T cd00344 2 KELSDIAHRIVAPGKGILAADESTGSIAKRLQSIGTENTEENRRFYRQLLLTADDRVNPRIGGVILFHETLYQKADDGRP 81 (328)
T ss_pred hHHHHHHHHhcCCCCeeEEeccCCCcccchhhhCCCCCchhhHHHHHHHHhccCchhhccEEEEEechhhccccCCCCcc
Confidence 69999999999999999999999999999999999999999999999999995 79999999999999999999999999
Q ss_pred hHHHHHhCCceeeeecCCCcccCCCCCCCCccCChhHHHHHHHHHhhCCCcccccceeeecCCC-cCHHHHHHHHHHHHH
Q 021290 132 MVDVLVEQNIVPGIKVDKGLVPLAGSNDESWCQGLDGLASRTAAYYQQGARFAKWRTVVSIPNG-PSALAVREAAWGLAR 210 (314)
Q Consensus 132 ~~~~L~~kGIvPGIKVDkGl~pl~g~~gE~~t~GLDgL~~R~~~y~~~Ga~FAKWRsVi~i~~~-Ps~~aI~~na~~LAr 210 (314)
|+++|+++|||||||||||++|++|.++|++|+|||||++||++||++||||||||+||+|++. ||..+|.+|++.|||
T Consensus 82 ~~~ll~~~GIvPgIKVDkGl~~l~g~~~ek~t~GLD~L~~R~~~y~~~GarfaKwRsVi~i~~~~Ps~~~I~~na~~lar 161 (328)
T cd00344 82 FPQVIKSKGGVVGIKVDKGVVPLAGTNGETTTQGLDGLSERCAQYKKDGADFAKWRCVLKIGEHTPSALAIMENANVLAR 161 (328)
T ss_pred HHHHHHhCCCeeeEEecCCcccCCCCCCCccCCChHHHHHHHHHHhhcCCceeeeeeeeecCCCCCcHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999765 999999999999999
Q ss_pred HHHHHHhCCceeeecceecCCCCcChhHHHHHHHHHHHHHHHHHHhCCccccccccccccccCCCCCCCCCChHHHHHHH
Q 021290 211 YAAIAQDNGLVPIVEPEILLDGDHGIDRTFEVAQKVWAEVFFYLAENNVMFEGILLKPSMVTPGAECKEKATPQQVAEYT 290 (314)
Q Consensus 211 yAaicQ~~GLVPIVEPEVl~dgdH~i~~c~~vte~VL~~vf~~L~~~~V~lEG~lLKPnMV~pG~~~~~~~s~eeVA~~T 290 (314)
||+|||++||||||||||||||+|+|++|++||++||.++|++|++|+|+|||+|||||||+||.+|+.++++|+||++|
T Consensus 162 yA~~cq~~GLVPIVEPEVlidg~h~i~~~~~vt~~vl~~~~~~L~~~~V~leg~lLKpnmv~~G~~~~~~~~~~~va~~t 241 (328)
T cd00344 162 YASICQQNGIVPIVEPEILPDGDHDLKRCQYVTEKVLAAVYKALSDHHIYLEGTLLKPNMVTPGHACTQKFSHEEIAMAT 241 (328)
T ss_pred HHHHHHHCCCCceecceeCCCCCccHHHHHHHHHHHHHHHHHHhhhcCCcccCeEEEccccccCccCCCcCCHHHHHHhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhccCCCCCCceEEeec
Q 021290 291 LKLLHRRIPPAVPGIMAILV 310 (314)
Q Consensus 291 v~~L~rtVP~avPGI~FLS~ 310 (314)
+++|+|+||++||||+|||-
T Consensus 242 ~~~l~~~vP~aVpgVvfLSG 261 (328)
T cd00344 242 VTALRRTVPPAVTGVTFLSG 261 (328)
T ss_pred HHHHHhhCCCcCCeEEeccC
Confidence 99999999999999999994
No 9
>COG3588 Fructose-1,6-bisphosphate aldolase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=5.2e-98 Score=702.75 Aligned_cols=257 Identities=45% Similarity=0.672 Sum_probs=251.8
Q ss_pred HHHHHHHHHhcCCCCceEeecCCCcchHHHhhhcCCCCChhhhhhhhhhcccCCCC-CCceeEEeeccccccccccCCcc
Q 021290 53 DELVKTAKTVASPGRGILAMDESNATCGKRLASIGLENTEANRQAYRTLLVTAPGL-GQYISGAILFEETLYQSTTDGKK 131 (314)
Q Consensus 53 ~eL~~tA~~i~a~GKGIlA~DES~gt~~Krl~~iGvente~nr~~yR~ll~ttp~l-~~~IsGvILfeETl~q~~~dG~~ 131 (314)
++|.+||.+|+++|||++|+|||+||++|||++|||||||+|||+||++||+||++ ++||+|||||||||+|+.++|.|
T Consensus 3 erl~~~a~~~v~nGKG~iAADeS~gt~~krf~~~Gie~te~srrd~Re~l~~s~~~~~~yI~GaILfeeTm~q~~~~g~p 82 (332)
T COG3588 3 ERLNDTALKKVANGKGFIAADESGGTTPKRFDSYGIEETEYSRRDMRERLFTSPDFMEDYILGAILFEETMDQKADGGYP 82 (332)
T ss_pred cchhHHHHHHHhcCCceEeecCCCCchhhHHHHcCCCCchhhhHHHHHHHhcCcccchhhhhheehhHHHHHHhhcCCCC
Confidence 57899999999999999999999999999999999999999999999999999977 99999999999999999999999
Q ss_pred hHHHHHhCCceeeeecCCCcccCCCCCCCCccCChhHHHHHHHHHhhCCCcccccceeeecCCC-cCHHHHHHHHHHHHH
Q 021290 132 MVDVLVEQNIVPGIKVDKGLVPLAGSNDESWCQGLDGLASRTAAYYQQGARFAKWRTVVSIPNG-PSALAVREAAWGLAR 210 (314)
Q Consensus 132 ~~~~L~~kGIvPGIKVDkGl~pl~g~~gE~~t~GLDgL~~R~~~y~~~Ga~FAKWRsVi~i~~~-Ps~~aI~~na~~LAr 210 (314)
++++++++|||||||||||+.|++|.++|++|+|||||++||++||++|+||||||+||+|.+. ||..+|.+|.+.|||
T Consensus 83 ~~~l~~~kgivPgiKvDkGl~~~~g~~~ek~t~gLd~L~~R~~~~~~~GarfaKwRsvI~~~~~~ps~~~I~~nv~~la~ 162 (332)
T COG3588 83 ADYLWKEKGIVPGIKVDKGLKPLAGVQLEKPTEGLDGLLKRAKEYHIFGARFAKWRSVIKIADGIPSWGGIKANVHQLAE 162 (332)
T ss_pred HHHHHHhcCCCcceeecCCcccccCCccccCCcCHHHHHHHHHHhhhccchHHHHHHHHHhccCCCccchHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999765 999999999999999
Q ss_pred HHHHHHhCCceeeecceecCCCCcChhHHHHHHHHHHHHHHHHHHhCCccccccccccccccCCCCCCCCCChHHHHHHH
Q 021290 211 YAAIAQDNGLVPIVEPEILLDGDHGIDRTFEVAQKVWAEVFFYLAENNVMFEGILLKPSMVTPGAECKEKATPQQVAEYT 290 (314)
Q Consensus 211 yAaicQ~~GLVPIVEPEVl~dgdH~i~~c~~vte~VL~~vf~~L~~~~V~lEG~lLKPnMV~pG~~~~~~~s~eeVA~~T 290 (314)
||++||++||||||||||+||||||+++|++||+.+|..+|++|++..|+|+|++||||||++|+.|.++ ||++||+.|
T Consensus 163 yAa~cq~aGlVPIVEPEV~mdg~~d~~~~eeVtk~~L~k~~~~L~~~~vvm~g~~lk~smv~~g~~~~~~-s~~~vae~t 241 (332)
T COG3588 163 YAALCQAAGLVPIVEPEVDIDGDHDKARSEEVTKAELRKLLNALNEERVVMLGLILKTSMVISGKKSREA-SPDEVAEDT 241 (332)
T ss_pred HHHHHHHCCCcccccceeeccCcccHHHHHHHHHHHHHHHHHHhhhhHhHhhcccccchhcccccccccc-chHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999755 999999999
Q ss_pred HHHhhccCCCCCCceEEeec
Q 021290 291 LKLLHRRIPPAVPGIMAILV 310 (314)
Q Consensus 291 v~~L~rtVP~avPGI~FLS~ 310 (314)
+.+|+.|||.+||||+|||-
T Consensus 242 l~~~~~tvP~~vpgIvfLSG 261 (332)
T COG3588 242 LYSLLSTVPAVVPGIVFLSG 261 (332)
T ss_pred HHHHHhcCCcccceeEEecC
Confidence 99999999999999999995
No 10
>PRK05377 fructose-1,6-bisphosphate aldolase; Reviewed
Probab=100.00 E-value=6.3e-73 Score=531.44 Aligned_cols=215 Identities=27% Similarity=0.354 Sum_probs=195.5
Q ss_pred CCCCceE-eecCCCcchHHHhhhcCCCCChhhh--------hhhhhhcccCCCC-CCceeEEeeccccccccccCCcchH
Q 021290 64 SPGRGIL-AMDESNATCGKRLASIGLENTEANR--------QAYRTLLVTAPGL-GQYISGAILFEETLYQSTTDGKKMV 133 (314)
Q Consensus 64 a~GKGIl-A~DES~gt~~Krl~~iGvente~nr--------~~yR~ll~ttp~l-~~~IsGvILfeETl~q~~~dG~~~~ 133 (314)
+|||||+ |+|||+|||||||+.|||||||+|| |+||++|||||+| ++|||||||||||||| ++||+||+
T Consensus 11 ~~GKG~lAAlDeS~GT~~Krl~~~GVente~n~~~eM~~li~~~R~~l~tsp~f~~~~I~GaILFEeTl~q-~~dG~p~~ 89 (296)
T PRK05377 11 KNGKGFIAALDQSGGSTPKALKLYGVEEDAYSNEEEMFDLVHEMRTRIITSPAFTGDKILGAILFEQTMDR-EIEGKPTA 89 (296)
T ss_pred cCCCceEEehhccCCchHHHHHHcCCCCcccccchhHHHHHHHHhhccccCccccccceEEEEcchHhhcC-ccCCcCHH
Confidence 4699987 6999999999999999999999996 9999999999996 9999999999999999 89999999
Q ss_pred HHHHh-CCceeeeecCCCcccCCCCCC---CCccCChhHHHHHHHHHhhCCCcccccceeeecCCCcCHHHHHHHHHHHH
Q 021290 134 DVLVE-QNIVPGIKVDKGLVPLAGSND---ESWCQGLDGLASRTAAYYQQGARFAKWRTVVSIPNGPSALAVREAAWGLA 209 (314)
Q Consensus 134 ~~L~~-kGIvPGIKVDkGl~pl~g~~g---E~~t~GLDgL~~R~~~y~~~Ga~FAKWRsVi~i~~~Ps~~aI~~na~~LA 209 (314)
++||+ +|||||||||||++|++ +| |++|+|||+|++||++|+ ++||||||||+|+ +..+|.+|++.||
T Consensus 90 d~L~e~kGIVPgIKVDKGl~~l~--~gvql~k~~~GLD~Ll~R~~~y~---~~GaKwRsViki~---~~~~I~~na~qla 161 (296)
T PRK05377 90 DYLWEKKGVVPFLKVDKGLAEEA--NGVQLMKPIPNLDDLLDRAVEKG---IFGTKMRSVIKEA---NEQGIAAVVAQQF 161 (296)
T ss_pred HHHHhcCCcceEEEecCCcccCC--CCccccccCCCHHHHHHHHHHhC---CCccceeeeecCC---CHHHHHHHHHHHH
Confidence 99998 99999999999999998 57 678999999999999994 6679999999996 4899999999999
Q ss_pred HHHHHHHhCCceeeecceecCCCCcChhHHHHHHHHHHHHHHHHHH-hCCccccccccccc-cccCCCCCCCCCChHHHH
Q 021290 210 RYAAIAQDNGLVPIVEPEILLDGDHGIDRTFEVAQKVWAEVFFYLA-ENNVMFEGILLKPS-MVTPGAECKEKATPQQVA 287 (314)
Q Consensus 210 ryAaicQ~~GLVPIVEPEVl~dgdH~i~~c~~vte~VL~~vf~~L~-~~~V~lEG~lLKPn-MV~pG~~~~~~~s~eeVA 287 (314)
|||++||++||||||||||+|||. |-+.|.++..+.+.+.++.|. ++.|+|..+|...+ ...+
T Consensus 162 ryA~~~q~~GLVPIVEPEVli~~~-~k~~~e~~l~~~i~~~l~~l~~~~~vmlkltlp~~~~~Y~~-------------- 226 (296)
T PRK05377 162 EVAKQILAAGLVPIIEPEVDINSP-DKAEAEAILKAEILKQLDALPEDQQVMLKLTIPTEANLYKE-------------- 226 (296)
T ss_pred HHHHHHHHcCCCceECCeECCCCc-CHHHHHHHHHHHHHHHHhhCCCCCeEEEEEecCCCCCcchh--------------
Confidence 999999999999999999999999 788999999999999999998 58899999987543 2222
Q ss_pred HHHHHHhhccCCCCCCceEEeec
Q 021290 288 EYTLKLLHRRIPPAVPGIMAILV 310 (314)
Q Consensus 288 ~~Tv~~L~rtVP~avPGI~FLS~ 310 (314)
-.-.|.|..|++||-
T Consensus 227 --------l~~hp~v~rvVaLSG 241 (296)
T PRK05377 227 --------LIDHPRVLRVVALSG 241 (296)
T ss_pred --------hccCCCeeEEEEccC
Confidence 145677888888885
No 11
>cd00949 FBP_aldolase_I_bact Fructose-1.6-bisphosphate aldolase found in gram +/- bacteria. The enzyme catalyzes the cleavage of fructose 1,6-bisphosphate to glyceraldehyde 3-phosphate and dihydroxyacetone phosphate (DHAP). The enzyme is member of the class I aldolase family, which utilizes covalent catalysis through a Schiff base formed between a lysine residue of the enzyme and ketose substrates.
Probab=100.00 E-value=3.4e-67 Score=492.05 Aligned_cols=205 Identities=31% Similarity=0.405 Sum_probs=174.7
Q ss_pred CCCCceE-eecCCCcchHHHhhhcCCCCC-----hhhh---hhhhhhcccCCCC-CCceeEEeeccccccccccCCcchH
Q 021290 64 SPGRGIL-AMDESNATCGKRLASIGLENT-----EANR---QAYRTLLVTAPGL-GQYISGAILFEETLYQSTTDGKKMV 133 (314)
Q Consensus 64 a~GKGIl-A~DES~gt~~Krl~~iGvent-----e~nr---~~yR~ll~ttp~l-~~~IsGvILfeETl~q~~~dG~~~~ 133 (314)
.+||||+ |+|||+|||||||++|||||| |+|| |+||++|||||+| ++||||||||||||||+ +||+||+
T Consensus 8 ~~GKGilAAlDES~GT~~Krl~~iGVent~y~~eee~r~~ih~~R~~lftsp~f~~~~IsGaILFEeTl~q~-~dG~p~~ 86 (292)
T cd00949 8 KSGKGFIAALDQSGGSTPKALAAYGIEEDAYSNEEEMFDLVHEMRTRIITSPAFDGDKILGAILFEQTMDRE-IEGKPTA 86 (292)
T ss_pred cCCCceEEehhccCCchHHHHHHcCCCCCCCCChHHHHHHHHHHhhccccCccccccceEEEEccHHhhcCc-cCCcCHH
Confidence 4599977 999999999999999999999 8888 5999999999996 99999999999999987 8999999
Q ss_pred HHHHhCC-ceeeeecCCCcccCCCCCCCC---ccCChhHHHHHHHHHhhCCCcccccceeeecCCCcCHHHHHHHHHHHH
Q 021290 134 DVLVEQN-IVPGIKVDKGLVPLAGSNDES---WCQGLDGLASRTAAYYQQGARFAKWRTVVSIPNGPSALAVREAAWGLA 209 (314)
Q Consensus 134 ~~L~~kG-IvPGIKVDkGl~pl~g~~gE~---~t~GLDgL~~R~~~y~~~Ga~FAKWRsVi~i~~~Ps~~aI~~na~~LA 209 (314)
++||++| ||||||||||++|++ +||+ +|+|||+|++||++|+ ++||||||||+|++.||+.+|++|||.|
T Consensus 87 d~L~e~ggIVPgIKVDKGl~~la--~Ge~lmk~~~GLD~Ll~R~~~~~---~~GaKwRsVIki~~~~~i~aiv~qq~~l- 160 (292)
T cd00949 87 DYLWEKKQIVPFLKVDKGLAEEK--NGVQLMKPIPNLDELLMRAKEKG---VFGTKMRSVIKEANPKGIAAVVDQQFEL- 160 (292)
T ss_pred HHHHhcCCeeeEEEecCCcccCC--CCcccCcCCccHHHHHHHHHHhC---CCCcceeeEeecCCcchHHHHHHHHHHH-
Confidence 9999875 999999999999998 6888 7889999999999985 6669999999999999999999999998
Q ss_pred HHHHHHHhCCceeeecceecCCCCcChhHHHHHHHHHHHHHHHHHH-hCCcccccccc-ccccccCCCCCC
Q 021290 210 RYAAIAQDNGLVPIVEPEILLDGDHGIDRTFEVAQKVWAEVFFYLA-ENNVMFEGILL-KPSMVTPGAECK 278 (314)
Q Consensus 210 ryAaicQ~~GLVPIVEPEVl~dgdH~i~~c~~vte~VL~~vf~~L~-~~~V~lEG~lL-KPnMV~pG~~~~ 278 (314)
|++||++||||||||||+||.++- +.|.++....+.+-.+.|. ++.|+|.=+|- ++|+..+=.++|
T Consensus 161 --A~~cq~~GLVPIVEPEVli~~~~k-~~~e~~l~~~i~~~l~~l~~~~~vmlkltlp~~~~~y~~l~~hp 228 (292)
T cd00949 161 --AKQILSHGLVPIIEPEVDIHSADK-AKCEAILKAEILKHLDKLPEGQQVMLKLTLPTEANFYSELIEHP 228 (292)
T ss_pred --HHHHHHcCCCceECceECCCCccH-HHHHHHHHHHHHHHHhcCCCCCeEEEEEecCCCcChhHHHhcCC
Confidence 677999999999999999997643 4566666665555666664 46777754442 344444433443
No 12
>PRK12399 tagatose 1,6-diphosphate aldolase; Reviewed
Probab=95.08 E-value=0.88 Score=45.09 Aligned_cols=217 Identities=16% Similarity=0.148 Sum_probs=120.3
Q ss_pred HhcCCCCc---eEeecCCCcchHHHhhhcCCC-CChhhhhhhhhhcccCCCCCCceeEEeeccccccccccCCcchHHHH
Q 021290 61 TVASPGRG---ILAMDESNATCGKRLASIGLE-NTEANRQAYRTLLVTAPGLGQYISGAILFEETLYQSTTDGKKMVDVL 136 (314)
Q Consensus 61 ~i~a~GKG---IlA~DES~gt~~Krl~~iGve-nte~nr~~yR~ll~ttp~l~~~IsGvILfeETl~q~~~dG~~~~~~L 136 (314)
+|.. .+| +||+||-+ ++-|-|...+-+ .+.+.=..+-.++. ..|..|-|++ |.|.-+. -|-.+.+
T Consensus 11 ~ls~-~~G~i~aLA~DQRg-slkkm~a~~~~~~~~~~~i~~fK~lvs--~~Ltp~ASaI-LlDpeyg------lpa~~~~ 79 (324)
T PRK12399 11 KLSN-ENGIISALAFDQRG-ALKRMMAQHQTEEPTVAQIEELKVLVS--EELTPYASSI-LLDPEYG------LPASKAR 79 (324)
T ss_pred HhcC-CCCCEEEEEeccHH-HHHHHHHhccCCCCCHHHHHHHHHHHH--HHhcccccee-eeccccC------chhhccc
Confidence 4444 555 89999975 677888888633 34444455555553 4566688875 4454442 2222222
Q ss_pred -HhCCceeeeecCCCcccCCCCCCCCccCC-hhHHHH--HHHHHhhCCCcccccceeeecCCCcCHHHHHHH-HHHHHHH
Q 021290 137 -VEQNIVPGIKVDKGLVPLAGSNDESWCQG-LDGLAS--RTAAYYQQGARFAKWRTVVSIPNGPSALAVREA-AWGLARY 211 (314)
Q Consensus 137 -~~kGIvPGIKVDkGl~pl~g~~gE~~t~G-LDgL~~--R~~~y~~~Ga~FAKWRsVi~i~~~Ps~~aI~~n-a~~LAry 211 (314)
++.|.+-.. +-.|. +..++| |++|.. -.++.+++|+.+.|-=--+..+..| +|+++ ..-+-|.
T Consensus 80 ~~~~GLllay-------EktGy--D~~~~gRl~~ll~~wS~~rike~GadavK~Llyy~pD~~~---~in~~k~a~verv 147 (324)
T PRK12399 80 DEDAGLLLAY-------EKTGY--DATTTGRLPDCLDDWSAKRIKEEGADAVKFLLYYDVDEPD---EINEQKKAYIERI 147 (324)
T ss_pred CcCCceEEEe-------hhhCC--ccCCCCCcccccchhhHHHHHHhCCCeEEEEEEECCCCCH---HHHHHHHHHHHHH
Confidence 345555441 11121 223333 555543 2334566899998865444333333 34443 4456788
Q ss_pred HHHHHhCCceeeecceecC---CCCcChhHHHHH-HHHHHHHHHHHHHh--CCcccccccccc----c--cccCCCCC-C
Q 021290 212 AAIAQDNGLVPIVEPEILL---DGDHGIDRTFEV-AQKVWAEVFFYLAE--NNVMFEGILLKP----S--MVTPGAEC-K 278 (314)
Q Consensus 212 AaicQ~~GLVPIVEPEVl~---dgdH~i~~c~~v-te~VL~~vf~~L~~--~~V~lEG~lLKP----n--MV~pG~~~-~ 278 (314)
.+-|.++||-=++||=+-. +..++.+- +++ -++|+. -.+.+.+ .||++ ||- | +| -|... .
T Consensus 148 g~eC~a~dipf~lE~ltY~~~~~d~~~~~y-ak~kP~~V~~-a~kefs~~~~gvDV----lKvEvPvn~~~v-eG~~~~e 220 (324)
T PRK12399 148 GSECVAEDIPFFLEILTYDEKIADNGSVEY-AKVKPHKVNE-AMKVFSKPRFGVDV----LKVEVPVNMKYV-EGFAEGE 220 (324)
T ss_pred HHHHHHCCCCeEEEEeeccCcccccccHHH-HhhChHHHHH-HHHHhccCCCCCcE----EEEecccccccc-cccCccc
Confidence 8889999999999997744 33444544 555 666655 5788866 67764 775 3 34 34322 2
Q ss_pred CCCChHHHHHHHHHHhhccCCCCCCceEEeecc
Q 021290 279 EKATPQQVAEYTLKLLHRRIPPAVPGIMAILVW 311 (314)
Q Consensus 279 ~~~s~eeVA~~Tv~~L~rtVP~avPGI~FLS~~ 311 (314)
..+|.+|.+. -++-+.+. ..+|-| |||..
T Consensus 221 ~~yt~~eA~~-~f~~~~~~--~~~P~i-~LSaG 249 (324)
T PRK12399 221 VVYTKEEAAQ-HFKEQDAA--THLPYI-YLSAG 249 (324)
T ss_pred ccccHHHHHH-HHHHHhhc--cCCCEE-EEcCC
Confidence 3446566544 33333333 445555 77753
No 13
>TIGR01232 lacD tagatose 1,6-diphosphate aldolase. This family consists of Gram-positive proteins. Tagatose 1,6-diphosphate aldolase is part of the tagatose-6-phosphate pathway of galactose-6-phosphate degradation.
Probab=95.04 E-value=0.91 Score=45.00 Aligned_cols=221 Identities=18% Similarity=0.151 Sum_probs=122.0
Q ss_pred HHhcCCCCc---eEeecCCCcchHHHhhhcCC-CCChhhhhhhhhhcccCCCCCCceeEEeeccccccccccCCcchHHH
Q 021290 60 KTVASPGRG---ILAMDESNATCGKRLASIGL-ENTEANRQAYRTLLVTAPGLGQYISGAILFEETLYQSTTDGKKMVDV 135 (314)
Q Consensus 60 ~~i~a~GKG---IlA~DES~gt~~Krl~~iGv-ente~nr~~yR~ll~ttp~l~~~IsGvILfeETl~q~~~dG~~~~~~ 135 (314)
++|.. .+| +||+||-+ ++-|-|...+- +.+.+.=..+-.++. ..|..|-|++.| |.-+ |-|-.+.
T Consensus 11 ~~ls~-~~G~i~aLAiDQRg-slkkm~a~~~~~~~~~~~i~~fK~lvs--~~LtpyASaILl-Dpey------glpa~~~ 79 (325)
T TIGR01232 11 EQLSN-NEGIISALAFDQRG-ALKRLMAKHQTEEPTVAQIEQLKVLVA--EELTQYASSILL-DPEY------GLPASDA 79 (325)
T ss_pred HHhcC-CCCCEEEEEecchH-HHHHHHHhcCCCCCcHHHHHHHHHHHH--HHhccccceEeE-cccc------Ccchhhc
Confidence 34444 555 89999975 68888888763 334444455555553 456668887554 4433 2222223
Q ss_pred H-HhCCceeeeecCCCcccCCCCCCCCccCChhHHHHH--HHHHhhCCCcccccceeeecCCCcCHHHHHHHHHHHHHHH
Q 021290 136 L-VEQNIVPGIKVDKGLVPLAGSNDESWCQGLDGLASR--TAAYYQQGARFAKWRTVVSIPNGPSALAVREAAWGLARYA 212 (314)
Q Consensus 136 L-~~kGIvPGIKVDkGl~pl~g~~gE~~t~GLDgL~~R--~~~y~~~Ga~FAKWRsVi~i~~~Ps~~aI~~na~~LAryA 212 (314)
+ ++.|.+-. .|| .|. +++...-|++|+.- .++.+++|+.+.|-=--+..+..|-+. ..+..-+-|..
T Consensus 80 ~~~~~GLlla--yEk-----tGy-d~~~~gRl~~ll~~~s~~rike~GadavK~Llyy~pD~~~ein--~~k~a~vervg 149 (325)
T TIGR01232 80 RNKDCGLLLA--YEK-----TGY-DVNAKGRLPDCLVEWSAKRLKEQGANAVKFLLYYDVDDAEEIN--IQKKAYIERIG 149 (325)
T ss_pred cCcCCceEEE--eHh-----hCC-cCCCCCcCccccccccHHHHHHhCCCeEEEEEEeCCCCChHHH--HHHHHHHHHHH
Confidence 3 34565554 222 221 22233345655333 345567899998865443333334222 23444567888
Q ss_pred HHHHhCCceeeecceecC---CCCcChhHHHHH-HHHHHHHHHHHHHh--CCccccccccccccccC-----CCCC-CCC
Q 021290 213 AIAQDNGLVPIVEPEILL---DGDHGIDRTFEV-AQKVWAEVFFYLAE--NNVMFEGILLKPSMVTP-----GAEC-KEK 280 (314)
Q Consensus 213 aicQ~~GLVPIVEPEVl~---dgdH~i~~c~~v-te~VL~~vf~~L~~--~~V~lEG~lLKPnMV~p-----G~~~-~~~ 280 (314)
+-|.++||-=++||=+-- ...++.+- +++ -++|+. -.+.+.+ .||++ ||--|=.. |... ...
T Consensus 150 ~ec~a~dipf~lE~ltYd~~~~~~~~~~y-ak~kP~~V~~-a~kefs~~~~gvDV----lKvEvPvn~~~veG~~~~e~~ 223 (325)
T TIGR01232 150 SECVAEDIPFFLEVLTYDDNIPDNGSVEF-AKVKPRKVNE-AMKLFSEPRFNVDV----LKVEVPVNVKYVEGFAEGEVV 223 (325)
T ss_pred HHHHHCCCCeEEEEeccCCCCCCCCcHHH-HHhChHHHHH-HHHHhccCCCCCcE----EEEecccccccccccCccccc
Confidence 899999999999986652 23455554 344 566655 5788887 77765 77554333 3222 233
Q ss_pred CChHHHHHHHHHHhhccCCCCCCceEEeecc
Q 021290 281 ATPQQVAEYTLKLLHRRIPPAVPGIMAILVW 311 (314)
Q Consensus 281 ~s~eeVA~~Tv~~L~rtVP~avPGI~FLS~~ 311 (314)
+|.+|.+.+- +-+.+. ..+|-| |||..
T Consensus 224 yt~~eA~~~f-~eq~~~--~~~P~i-~LSaG 250 (325)
T TIGR01232 224 YTKEEAAQHF-KDQDAA--THLPYI-YLSAG 250 (325)
T ss_pred ccHHHHHHHH-HHHhhc--cCCCEE-EEcCC
Confidence 4555544432 222222 344554 77753
No 14
>PRK04161 tagatose 1,6-diphosphate aldolase; Reviewed
Probab=94.30 E-value=1.6 Score=43.34 Aligned_cols=220 Identities=15% Similarity=0.138 Sum_probs=122.5
Q ss_pred HHhcCCCCc---eEeecCCCcchHHHhhhcC-CCCChhhhhhhhhhcccCCCCCCceeEEeeccccccccccCCcchHHH
Q 021290 60 KTVASPGRG---ILAMDESNATCGKRLASIG-LENTEANRQAYRTLLVTAPGLGQYISGAILFEETLYQSTTDGKKMVDV 135 (314)
Q Consensus 60 ~~i~a~GKG---IlA~DES~gt~~Krl~~iG-vente~nr~~yR~ll~ttp~l~~~IsGvILfeETl~q~~~dG~~~~~~ 135 (314)
++|.. .+| +||+||-+ ++-|-|...+ -+.+.+.=..+-.++ +..|..|-|+ ||.|.-+. -|=...
T Consensus 12 ~~ls~-~~G~i~aLAiDQRg-slkkm~a~~~~~~~~~~~i~~fK~lv--s~~Ltp~ASa-ILlDpeyg------lpa~~~ 80 (329)
T PRK04161 12 EKVSN-SQGIISALAFDQRG-ALKRMMAAHQEGEATVTQIETLKVLV--SEELTPYASS-ILLDPEYG------LPATKV 80 (329)
T ss_pred HHhcC-CCCCEEEEEecchH-HHHHHHHhcCCCCCcHHHHHHHHHHH--HHHhhhhcce-eeeccccC------ccchhc
Confidence 34544 556 89999975 6888888775 343444445555555 3456777776 55555442 111122
Q ss_pred H-HhCCceeeeecCCCcccCCCCCCCCccCChhHHHH--HHHHHhhCCCcccccceeeecCCCcCHHHHHH-HHHHHHHH
Q 021290 136 L-VEQNIVPGIKVDKGLVPLAGSNDESWCQGLDGLAS--RTAAYYQQGARFAKWRTVVSIPNGPSALAVRE-AAWGLARY 211 (314)
Q Consensus 136 L-~~kGIvPGIKVDkGl~pl~g~~gE~~t~GLDgL~~--R~~~y~~~Ga~FAKWRsVi~i~~~Ps~~aI~~-na~~LAry 211 (314)
+ .+.|.+-.. +-.|. +++...-|++|++ -.++.+++|+.+.|-=--+..+..| +|.+ +..-+-|.
T Consensus 81 ~~~~~GLllay-------EktGy-D~~~~gRl~~ll~~ws~~rike~GadavK~Llyy~pD~~~---ein~~k~a~verv 149 (329)
T PRK04161 81 RANQTGLLLAY-------EKTGY-DATTTSRLPDCLVEWSVKRLKEAGADAVKFLLYYDVDGDE---EINDQKQAYIERI 149 (329)
T ss_pred cCCCCceEEee-------cccCc-ccCCCCccccccchhhHHHHHHhCCCeEEEEEEECCCCCH---HHHHHHHHHHHHH
Confidence 2 234444431 11121 2333344666653 3445567899999865444444334 3433 34456788
Q ss_pred HHHHHhCCceeeecceec---CCCCcChhHHHHHHHHHHHHHHHHHHh--CCcccccccccc------ccccCCCCC-CC
Q 021290 212 AAIAQDNGLVPIVEPEIL---LDGDHGIDRTFEVAQKVWAEVFFYLAE--NNVMFEGILLKP------SMVTPGAEC-KE 279 (314)
Q Consensus 212 AaicQ~~GLVPIVEPEVl---~dgdH~i~~c~~vte~VL~~vf~~L~~--~~V~lEG~lLKP------nMV~pG~~~-~~ 279 (314)
.+-|.++||-=++||=+- ++..++.+.+..--++|+.. .+.+.+ .||++ ||- |+| -|... ..
T Consensus 150 g~eC~a~dipf~lE~l~Yd~~~~d~~~~eyak~kP~~V~~a-mkefs~~~~gvDV----lKvEvPvn~~~v-eG~~~g~~ 223 (329)
T PRK04161 150 GSECTAEDIPFFLELLTYDERISDNNSAAYAKLKPHKVNGA-MKVFSDKRFGVDV----LKVEVPVNMAYV-EGFTEGEV 223 (329)
T ss_pred HHHHHHCCCCeEEEEeccCCcccccccHHHHhhChHHHHHH-HHHhccCCCCCcE----EEEecccccccc-cccCcccc
Confidence 888999999999998664 23344555544335667664 578875 77765 775 334 23222 33
Q ss_pred CCChHHHHHHHHHHhhccCCCCCCceEEeecc
Q 021290 280 KATPQQVAEYTLKLLHRRIPPAVPGIMAILVW 311 (314)
Q Consensus 280 ~~s~eeVA~~Tv~~L~rtVP~avPGI~FLS~~ 311 (314)
.+|.+|.+.+ ++-+.+. ..+|-| |||..
T Consensus 224 ~yt~~eA~~~-f~~~~~~--~~~P~i-~LSaG 251 (329)
T PRK04161 224 VYSQEEAIKA-FKDQEAA--THLPYI-YLSAG 251 (329)
T ss_pred cccHHHHHHH-HHHHhcc--cCCCEE-EEcCC
Confidence 4566665443 3333333 445555 77753
No 15
>PRK12858 tagatose 1,6-diphosphate aldolase; Reviewed
Probab=79.63 E-value=69 Score=31.88 Aligned_cols=180 Identities=18% Similarity=0.121 Sum_probs=91.4
Q ss_pred CCCc-eEeecCCCcchHHHhhhc-CCCCChhhhhhhhhhcccCCCCCCceeEEeeccccccccccCCcchHHHHHhCCce
Q 021290 65 PGRG-ILAMDESNATCGKRLASI-GLENTEANRQAYRTLLVTAPGLGQYISGAILFEETLYQSTTDGKKMVDVLVEQNIV 142 (314)
Q Consensus 65 ~GKG-IlA~DES~gt~~Krl~~i-Gvente~nr~~yR~ll~ttp~l~~~IsGvILfeETl~q~~~dG~~~~~~L~~kGIv 142 (314)
+|+= +||+|+ -|.+.|-++.. |-+.+.+.=..+.+++.. .+..+.+|++|. .++..... .....+.|++
T Consensus 17 ~G~~~~lAiDH-rG~l~~m~~~~~~~~~~~~~l~~~K~lv~~--~l~~~asaILld-~~yG~~a~-----~~~~~~~GLi 87 (340)
T PRK12858 17 RGVIAAAAMDQ-RGSLKKMLAKARGDEASYTDLVDFKLAVSE--ALTPYASAILLD-PEYGLPAA-----KVRDPNCGLL 87 (340)
T ss_pred CCCEEEEecCC-ccHHHHHHHhccccCcchhhHHHHHHHHHH--HHhhCCCEEEEc-cccChhhh-----cccCCCCCeE
Confidence 4555 999999 68888777652 122222233455555433 234456775554 43322111 1111456766
Q ss_pred eeeecCCCcccCCCCCCCCccCChhHH-----HHHHHHHhhCCCcccccceeeecCCCcCHHHHHH-HHHHHHHHHHHHH
Q 021290 143 PGIKVDKGLVPLAGSNDESWCQGLDGL-----ASRTAAYYQQGARFAKWRTVVSIPNGPSALAVRE-AAWGLARYAAIAQ 216 (314)
Q Consensus 143 PGIKVDkGl~pl~g~~gE~~t~GLDgL-----~~R~~~y~~~Ga~FAKWRsVi~i~~~Ps~~aI~~-na~~LAryAaicQ 216 (314)
-. +|+ +|. +.+..-.++++ .+++ .++||..-|--..+. ++. ..+|.+ |...|+|-..-|+
T Consensus 88 l~--~e~-----tg~-d~t~~gr~~~~~~~~sve~a---~~~GAdAVk~lv~~~-~d~--~~~~~~~~~~~l~rv~~ec~ 153 (340)
T PRK12858 88 LS--YEK-----TGY-DATAPGRLPDLLDNWSVRRI---KEAGADAVKLLLYYR-PDE--DDAINDRKHAFVERVGAECR 153 (340)
T ss_pred EE--ecc-----ccc-ccCCCCCCccccccccHHHH---HHcCCCEEEEEEEeC-CCc--chHHHHHHHHHHHHHHHHHH
Confidence 55 443 110 01111012222 3444 457888766543333 221 223333 4447899999999
Q ss_pred hCCceeeecceecCCCCcChhH--HHHHHHHHHHHHHHHHH--hCCccccccccccccc
Q 021290 217 DNGLVPIVEPEILLDGDHGIDR--TFEVAQKVWAEVFFYLA--ENNVMFEGILLKPSMV 271 (314)
Q Consensus 217 ~~GLVPIVEPEVl~dgdH~i~~--c~~vte~VL~~vf~~L~--~~~V~lEG~lLKPnMV 271 (314)
+.|+-=++||=+...|..+-+. -.++....+....+.+. +.|++ ++|-.+-
T Consensus 154 ~~giPlllE~l~y~~~~~~~~~~~~a~~~p~~V~~a~r~~~~~elGaD----vlKve~p 208 (340)
T PRK12858 154 ANDIPFFLEPLTYDGKGSDKKAEEFAKVKPEKVIKTMEEFSKPRYGVD----VLKVEVP 208 (340)
T ss_pred HcCCceEEEEeccCCCccccccccccccCHHHHHHHHHHHhhhccCCe----EEEeeCC
Confidence 9999889976444443322111 12222234455667777 48884 5776543
No 16
>cd07941 DRE_TIM_LeuA3 Desulfobacterium autotrophicum LeuA3 and related proteins, N-terminal catalytic TIM barrel domain. Desulfobacterium autotrophicum LeuA3 is sequence-similar to alpha-isopropylmalate synthase (LeuA) but its exact function is unknown. Members of this family have an N-terminal TIM barrel domain that belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of in
Probab=52.09 E-value=1e+02 Score=29.04 Aligned_cols=82 Identities=16% Similarity=0.233 Sum_probs=53.1
Q ss_pred CHHHHHHHHHHHHHHHHHHHhCCceeeecceecCCC-CcChhHHHHHHHHHHHHHHHHHHhCCccccccccccccccCCC
Q 021290 197 SALAVREAAWGLARYAAIAQDNGLVPIVEPEILLDG-DHGIDRTFEVAQKVWAEVFFYLAENNVMFEGILLKPSMVTPGA 275 (314)
Q Consensus 197 s~~aI~~na~~LAryAaicQ~~GLVPIVEPEVl~dg-dH~i~~c~~vte~VL~~vf~~L~~~~V~lEG~lLKPnMV~pG~ 275 (314)
+.....++...+.+| +.+.|+-..+-+|-++|+ .|+.+...++.+++. +.|+. .+.= .
T Consensus 113 ~~~~~~~~~~~~i~~---ak~~G~~v~~~~~~~~d~~~~~~~~~~~~~~~~~--------~~g~~---------~i~l-~ 171 (273)
T cd07941 113 TLEENLAMIRDSVAY---LKSHGREVIFDAEHFFDGYKANPEYALATLKAAA--------EAGAD---------WLVL-C 171 (273)
T ss_pred CHHHHHHHHHHHHHH---HHHcCCeEEEeEEeccccCCCCHHHHHHHHHHHH--------hCCCC---------EEEE-e
Confidence 344455666666666 578998777778888887 788877666665553 33332 1111 2
Q ss_pred CCCCCCChHHHHHHHHHHhhccCCC
Q 021290 276 ECKEKATPQQVAEYTLKLLHRRIPP 300 (314)
Q Consensus 276 ~~~~~~s~eeVA~~Tv~~L~rtVP~ 300 (314)
|....++|++|++. ++.|++.+|-
T Consensus 172 DT~G~~~P~~v~~l-v~~l~~~~~~ 195 (273)
T cd07941 172 DTNGGTLPHEIAEI-VKEVRERLPG 195 (273)
T ss_pred cCCCCCCHHHHHHH-HHHHHHhCCC
Confidence 44557899998765 5677777774
No 17
>PF01261 AP_endonuc_2: Xylose isomerase-like TIM barrel; InterPro: IPR012307 This TIM alpha/beta barrel structure is found in xylose isomerase (P19148 from SWISSPROT) and in endonuclease IV (P12638 from SWISSPROT, 3.1.21.2 from EC). This domain is also found in the N termini of bacterial myo-inositol catabolism proteins. These are involved in the myo-inositol catabolism pathway, and is required for growth on myo-inositol in Rhizobium leguminosarum bv. viciae []. ; PDB: 3KWS_B 3DX5_A 3CQH_B 3CQI_A 3CQK_A 3CQJ_B 2G0W_B 1DXI_A 2ZDS_D 3TVA_B ....
Probab=51.27 E-value=1.1e+02 Score=25.80 Aligned_cols=114 Identities=14% Similarity=0.152 Sum_probs=56.6
Q ss_pred chHHHHHhCCce-eeeecCCCcccCCC----CCCCCccCChhHHHHHHHHHhhCCCcccccceee-ec-CCCcCHHHHHH
Q 021290 131 KMVDVLVEQNIV-PGIKVDKGLVPLAG----SNDESWCQGLDGLASRTAAYYQQGARFAKWRTVV-SI-PNGPSALAVRE 203 (314)
Q Consensus 131 ~~~~~L~~kGIv-PGIKVDkGl~pl~g----~~gE~~t~GLDgL~~R~~~y~~~Ga~FAKWRsVi-~i-~~~Ps~~aI~~ 203 (314)
.+.+.+++.||- +++-.......... .+.+ .-+.++.+.+.+......|++.-..-+.- .. ...........
T Consensus 31 ~~~~~~~~~gl~i~~~~~~~~~~~~~~~~~~~~~~-r~~~~~~~~~~i~~a~~lg~~~i~~~~g~~~~~~~~~~~~~~~~ 109 (213)
T PF01261_consen 31 ELRRLLEDYGLKIASLHPPTNFWSPDEENGSANDE-REEALEYLKKAIDLAKRLGAKYIVVHSGRYPSGPEDDTEENWER 109 (213)
T ss_dssp HHHHHHHHTTCEEEEEEEEESSSCTGTTSTTSSSH-HHHHHHHHHHHHHHHHHHTBSEEEEECTTESSSTTSSHHHHHHH
T ss_pred HHHHHHHHcCCeEEEEecccccccccccccCcchh-hHHHHHHHHHHHHHHHHhCCCceeecCcccccccCCCHHHHHHH
Confidence 356677788876 33333222221110 1111 22235555555555555676542221110 01 12233455556
Q ss_pred HHHHHHHHHHHHHhCCceeeecceecCCCCcC--hhHHHHHHHH
Q 021290 204 AAWGLARYAAIAQDNGLVPIVEPEILLDGDHG--IDRTFEVAQK 245 (314)
Q Consensus 204 na~~LAryAaicQ~~GLVPIVEPEVl~dgdH~--i~~c~~vte~ 245 (314)
....|.+.+.++.+.|+...+||.--...+.. ++...++-++
T Consensus 110 ~~~~l~~l~~~a~~~gv~i~lE~~~~~~~~~~~~~~~~~~~l~~ 153 (213)
T PF01261_consen 110 LAENLRELAEIAEEYGVRIALENHPGPFSETPFSVEEIYRLLEE 153 (213)
T ss_dssp HHHHHHHHHHHHHHHTSEEEEE-SSSSSSSEESSHHHHHHHHHH
T ss_pred HHHHHHHHHhhhhhhcceEEEecccCccccchhhHHHHHHHHhh
Confidence 66667777777899999999999765544332 2444444333
No 18
>cd00532 MGS-like MGS-like domain. This domain composes the whole protein of methylglyoxal synthetase, which catalyzes the enolization of dihydroxyacetone phosphate (DHAP) to produce methylglyoxal. The family also includes the C-terminal domain in carbamoyl phosphate synthetase (CPS) where it catalyzes the last phosphorylation of a coaboxyphosphate intermediate to form the product carbamoyl phosphate and may also play a regulatory role. This family also includes inosine monophosphate cyclohydrolase. The known structures in this family show a common phosphate binding site.
Probab=48.90 E-value=59 Score=26.46 Aligned_cols=83 Identities=16% Similarity=0.190 Sum_probs=55.0
Q ss_pred chHHHHHHHHHHhcCCCCceEeecCCCcchHHHhhhcCCCCChhh------hhhhhhhcccCCCCC-CceeEEeeccccc
Q 021290 50 SYADELVKTAKTVASPGRGILAMDESNATCGKRLASIGLENTEAN------RQAYRTLLVTAPGLG-QYISGAILFEETL 122 (314)
Q Consensus 50 ~~~~eL~~tA~~i~a~GKGIlA~DES~gt~~Krl~~iGvente~n------r~~yR~ll~ttp~l~-~~IsGvILfeETl 122 (314)
..++++...|+++...|-.|.| ++.+.+.|+..|++-+.-+ +....++|- + ..|.-||-+....
T Consensus 9 ~~K~~~~~~a~~l~~~G~~i~A----T~gTa~~L~~~Gi~~~~v~~~~~~g~~~i~~~i~-----~~g~idlVIn~~~~~ 79 (112)
T cd00532 9 HVKAMLVDLAPKLSSDGFPLFA----TGGTSRVLADAGIPVRAVSKRHEDGEPTVDAAIA-----EKGKFDVVINLRDPR 79 (112)
T ss_pred ccHHHHHHHHHHHHHCCCEEEE----CcHHHHHHHHcCCceEEEEecCCCCCcHHHHHHh-----CCCCEEEEEEcCCCC
Confidence 4688999999999988888987 6789999999999865521 222333331 4 5788888876544
Q ss_pred cc--cccCCcchHHHHHhCCc
Q 021290 123 YQ--STTDGKKMVDVLVEQNI 141 (314)
Q Consensus 123 ~q--~~~dG~~~~~~L~~kGI 141 (314)
.+ ...||..+-..--+.||
T Consensus 80 ~~~~~~~dg~~iRR~A~~~~I 100 (112)
T cd00532 80 RDRCTDEDGTALLRLARLYKI 100 (112)
T ss_pred cccccCCChHHHHHHHHHcCC
Confidence 31 24556555544445554
No 19
>PRK11303 DNA-binding transcriptional regulator FruR; Provisional
Probab=44.99 E-value=2.5e+02 Score=25.71 Aligned_cols=166 Identities=13% Similarity=0.051 Sum_probs=87.4
Q ss_pred CCceeEEeeccccccccccCCcchHHHHHhCCceeeeecCCCcccCCCCCCCCccCChhHHHHHHH-HHhhCCCcccccc
Q 021290 109 GQYISGAILFEETLYQSTTDGKKMVDVLVEQNIVPGIKVDKGLVPLAGSNDESWCQGLDGLASRTA-AYYQQGARFAKWR 187 (314)
Q Consensus 109 ~~~IsGvILfeETl~q~~~dG~~~~~~L~~kGIvPGIKVDkGl~pl~g~~gE~~t~GLDgL~~R~~-~y~~~Ga~FAKWR 187 (314)
+..+-|+|++...- +..++.+.|.+.| +|-+=+|...... +.+.. .+..-.+ ..+++ .+.++|. |
T Consensus 115 ~~~vdgiIi~~~~~-----~~~~~~~~l~~~~-iPvV~v~~~~~~~-~~~~V-~~d~~~~-~~~a~~~L~~~G~-----r 180 (328)
T PRK11303 115 QRQVDALIVSTSLP-----PEHPFYQRLQNDG-LPIIALDRALDRE-HFTSV-VSDDQDD-AEMLAESLLKFPA-----E 180 (328)
T ss_pred HcCCCEEEEcCCCC-----CChHHHHHHHhcC-CCEEEECCCCCCC-CCCEE-EeCCHHH-HHHHHHHHHHCCC-----C
Confidence 45688999864211 1123455666677 5777788754221 11110 1222222 23333 3445662 4
Q ss_pred eeeecCCCcCHHHHHHHHHHHHHHHHHHHhCCceeeecceecCCCCcChhHHHHHHHHHHH-----------------HH
Q 021290 188 TVVSIPNGPSALAVREAAWGLARYAAIAQDNGLVPIVEPEILLDGDHGIDRTFEVAQKVWA-----------------EV 250 (314)
Q Consensus 188 sVi~i~~~Ps~~aI~~na~~LAryAaicQ~~GLVPIVEPEVl~dgdH~i~~c~~vte~VL~-----------------~v 250 (314)
.+.-+.+.+....- ..-..-|...|+++|+. +++...++.+.+...+.+++.|. .+
T Consensus 181 ~I~~i~~~~~~~~~---~~R~~Gf~~al~~~g~~----~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~~~~d~~A~g~ 253 (328)
T PRK11303 181 SILLLGALPELSVS---FEREQGFRQALKDDPRE----VHYLYANSFEREAGAQLFEKWLETHPMPDALFTTSYTLLQGV 253 (328)
T ss_pred eEEEEeCccccccH---HHHHHHHHHHHHHcCCC----ceEEEeCCCChHHHHHHHHHHHcCCCCCCEEEEcCcHHHHHH
Confidence 45545333321111 12234466668999983 23344556666666655555542 47
Q ss_pred HHHHHhCCcccccccc--------ccccccCCCCCCCCCChHHHHHHHHHHhhc
Q 021290 251 FFYLAENNVMFEGILL--------KPSMVTPGAECKEKATPQQVAEYTLKLLHR 296 (314)
Q Consensus 251 f~~L~~~~V~lEG~lL--------KPnMV~pG~~~~~~~s~eeVA~~Tv~~L~r 296 (314)
+++|.++|+...+-+- =-+++.|+..+ -...+++++...++.|.+
T Consensus 254 ~~al~~~g~~vP~disv~gfd~~~~~~~~~p~ltt-v~~~~~~~g~~a~~~l~~ 306 (328)
T PRK11303 254 LDVLLERPGELPSDLAIATFGDNELLDFLPCPVNA-VAQQHRLIAERALELALA 306 (328)
T ss_pred HHHHHHcCCCCCCceEEEEeCChHHHhccCCCceE-EecCHHHHHHHHHHHHHH
Confidence 8899998875432220 12334455443 456789999999988754
No 20
>PF15608 PELOTA_1: PELOTA RNA binding domain
Probab=43.70 E-value=23 Score=29.89 Aligned_cols=37 Identities=32% Similarity=0.528 Sum_probs=22.4
Q ss_pred HHHHHHHHHhCCccccccccccccccCCCCCCCCCChHHHHHHHHHHhhccCCCC
Q 021290 247 WAEVFFYLAENNVMFEGILLKPSMVTPGAECKEKATPQQVAEYTLKLLHRRIPPA 301 (314)
Q Consensus 247 L~~vf~~L~~~~V~lEG~lLKPnMV~pG~~~~~~~s~eeVA~~Tv~~L~rtVP~a 301 (314)
+..|=.-..++||.= .|+|.|| |+++| ++|.|+||--
T Consensus 22 ~~~v~~i~~~~gI~d------iN~IKPG-----------IgEaT-RvLLRRvP~~ 58 (100)
T PF15608_consen 22 WAEVERIAERYGISD------INLIKPG-----------IGEAT-RVLLRRVPWK 58 (100)
T ss_pred HHHHHHHHHHhCCCC------cccccCC-----------hhHHH-HHHHhcCCCE
Confidence 333333344555543 8999999 56655 5666788743
No 21
>cd06287 PBP1_LacI_like_8 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=35.91 E-value=3.3e+02 Score=24.56 Aligned_cols=167 Identities=20% Similarity=0.176 Sum_probs=87.8
Q ss_pred CCceeEEeeccccccccccCCcchHHHHHhCCceeeeecCCCcccCCCCCCCCccCChhHHHHHHHHHhhCCCcccccce
Q 021290 109 GQYISGAILFEETLYQSTTDGKKMVDVLVEQNIVPGIKVDKGLVPLAGSNDESWCQGLDGLASRTAAYYQQGARFAKWRT 188 (314)
Q Consensus 109 ~~~IsGvILfeETl~q~~~dG~~~~~~L~~kGIvPGIKVDkGl~pl~g~~gE~~t~GLDgL~~R~~~y~~~Ga~FAKWRs 188 (314)
...+-|+|++..... .+..+.|.+.+ +|.|=+|.-...-.+.+. -.+..-++-..-+..+.+.|. |.
T Consensus 54 ~~~vdgiIi~~~~~~------~~~~~~l~~~~-iPvV~i~~~~~~~~~~~~-V~~d~~~~~~~a~~~L~~~G~-----~~ 120 (269)
T cd06287 54 ALDIDGAILVEPMAD------DPQVARLRQRG-IPVVSIGRPPGDRTDVPY-VDLQSAATARMLLEHLRAQGA-----RQ 120 (269)
T ss_pred ccCcCeEEEecCCCC------CHHHHHHHHcC-CCEEEeCCCCCCCCCCCe-EeeCcHHHHHHHHHHHHHcCC-----Cc
Confidence 457899999853321 12344555555 577777764320111110 112223333333344455664 34
Q ss_pred eeecCCCcCHHHHHHHHHHHHHHHHHHHhCCceeeecceecCCCCcChhHHHHHHHHHHH-----------------HHH
Q 021290 189 VVSIPNGPSALAVREAAWGLARYAAIAQDNGLVPIVEPEILLDGDHGIDRTFEVAQKVWA-----------------EVF 251 (314)
Q Consensus 189 Vi~i~~~Ps~~aI~~na~~LAryAaicQ~~GLVPIVEPEVl~dgdH~i~~c~~vte~VL~-----------------~vf 251 (314)
+.-+.+.+..... ...+.-|-..|+++|+-+.+ +...++.+.+...+.+++.|. .+.
T Consensus 121 I~~i~~~~~~~~~---~~R~~gf~~a~~~~g~~~~~---~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~~~~d~~A~gvl 194 (269)
T cd06287 121 IALIVGSARRNSY---LEAEAAYRAFAAEHGMPPVV---LRVDEAGGEEAGYAACAQLLAQHPDLDALCVPVDAFAVGAV 194 (269)
T ss_pred EEEEeCCcccccH---HHHHHHHHHHHHHcCCCcce---eEecCCCChHHHHHHHHHHHhCCCCCCEEEEcCcHHHHHHH
Confidence 4445322211111 22334455558899975421 223455666666666666553 477
Q ss_pred HHHHhCCcccccc---------ccccccccCCCCCCCCCChHHHHHHHHHHhhc
Q 021290 252 FYLAENNVMFEGI---------LLKPSMVTPGAECKEKATPQQVAEYTLKLLHR 296 (314)
Q Consensus 252 ~~L~~~~V~lEG~---------lLKPnMV~pG~~~~~~~s~eeVA~~Tv~~L~r 296 (314)
++|+++|+.+..- .. -.+..|...+ -...++++++..++.|.+
T Consensus 195 ~al~~~gl~vP~dvsvig~~d~~~-~~~~~p~ltt-i~~~~~~~g~~A~~~l~~ 246 (269)
T cd06287 195 RAATELGRAVPDQLRVVTRYDGLR-ARTSEPPLTA-VDLHLDEVAEQAVDLLFA 246 (269)
T ss_pred HHHHHcCCCCCCceEEEeccCchh-hccCCCCccc-ccCCHHHHHHHHHHHHHH
Confidence 8899988754321 11 2344455443 566789999999988754
No 22
>smart00832 C8 C8 domain. This domain contains 8 conserved cysteine residues, but this family only contains 7 of them to overlaps with other domains. It is found in disease-related proteins including von Willebrand factor, Alpha tectorin, Zonadhesin and Mucin.
Probab=32.68 E-value=35 Score=26.54 Aligned_cols=17 Identities=35% Similarity=0.481 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHhCCce
Q 021290 205 AWGLARYAAIAQDNGLV 221 (314)
Q Consensus 205 a~~LAryAaicQ~~GLV 221 (314)
...|+.||+.|++.|+.
T Consensus 49 C~al~aYa~aC~~~Gv~ 65 (76)
T smart00832 49 CDALAAYAAACAEAGVC 65 (76)
T ss_pred CHHHHHHHHHHHHCcCc
Confidence 67899999999999964
No 23
>PF08742 C8: C8 domain; InterPro: IPR014853 The proteins in this entry contained a domain rich in positionally conserved cysteine residues. Most proteins contains 7 or 8 cysteine residues. The domain is found in disease-related proteins including von Willebrand factor, Alpha tectorin, Zonadhesin and Mucin. It is often found on proteins containing IPR001846 from INTERPRO and IPR002919 from INTERPRO.
Probab=31.19 E-value=39 Score=25.39 Aligned_cols=18 Identities=28% Similarity=0.340 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHhCCcee
Q 021290 205 AWGLARYAAIAQDNGLVP 222 (314)
Q Consensus 205 a~~LAryAaicQ~~GLVP 222 (314)
...|+-||+.|+..|+.+
T Consensus 47 C~~l~~Ya~~C~~~g~~~ 64 (74)
T PF08742_consen 47 CEALSAYARECQRAGICV 64 (74)
T ss_pred hHHHHHHHHHHHHCcCCC
Confidence 678999999999999864
No 24
>PF11285 DUF3086: Protein of unknown function (DUF3086); InterPro: IPR021437 This family of proteins with unknown function appears to be restricted to Cyanobacteria.
Probab=29.92 E-value=34 Score=33.52 Aligned_cols=60 Identities=30% Similarity=0.469 Sum_probs=39.8
Q ss_pred hhhcCCCCChh----hhhhhhhhc-ccCCCCCCceeEEeeccc--cccccccCCcchHHHHHhCCceeeeecCCC
Q 021290 83 LASIGLENTEA----NRQAYRTLL-VTAPGLGQYISGAILFEE--TLYQSTTDGKKMVDVLVEQNIVPGIKVDKG 150 (314)
Q Consensus 83 l~~iGvente~----nr~~yR~ll-~ttp~l~~~IsGvILfeE--Tl~q~~~dG~~~~~~L~~kGIvPGIKVDkG 150 (314)
|+.+=+-|+.| .||-.-+.| ++-++||-. +|++|||. -|-|| +|.|.++|-+|.|=+|..
T Consensus 189 ~~tLVLA~~PERLGEWRRGLQDcLGi~R~DFGP~-~GivLFE~~daL~qr-------ADRL~~~~~lPlIiID~a 255 (283)
T PF11285_consen 189 FQTLVLANSPERLGEWRRGLQDCLGISREDFGPN-SGIVLFERPDALIQR-------ADRLEERGELPLIIIDAA 255 (283)
T ss_pred eeeeeecCChhHHHHHHHHHHHhhCCCccccCCC-cceEEeeCcHHHHHH-------HHHHHhcCCCCEEEEccc
Confidence 33333445543 444444554 344667543 79999984 56666 679999999999999864
No 25
>PF10058 DUF2296: Predicted integral membrane metal-binding protein (DUF2296); InterPro: IPR019273 This domain, found mainly in the eukaryotic lunapark proteins, has no known function [].
Probab=28.63 E-value=7 Score=29.19 Aligned_cols=20 Identities=50% Similarity=0.675 Sum_probs=15.8
Q ss_pred HHHHHHHh----CCceeeecceec
Q 021290 210 RYAAIAQD----NGLVPIVEPEIL 229 (314)
Q Consensus 210 ryAaicQ~----~GLVPIVEPEVl 229 (314)
|||-||+. ||++|..|+|-+
T Consensus 20 r~aLIC~~C~~hNGla~~~~~~~i 43 (54)
T PF10058_consen 20 RYALICSKCFSHNGLAPKEEFEEI 43 (54)
T ss_pred ceeEECcccchhhcccccccCCce
Confidence 78888876 899997777643
No 26
>cd06274 PBP1_FruR Ligand binding domain of DNA transcription repressor specific for fructose (FruR) and its close homologs. Ligand binding domain of DNA transcription repressor specific for fructose (FruR) and its close homologs, all of which are a member of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to members of the type I periplasmic binding protein superfamily. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor
Probab=25.55 E-value=4.6e+02 Score=22.91 Aligned_cols=167 Identities=14% Similarity=0.134 Sum_probs=88.8
Q ss_pred CCceeEEeeccccccccccCCcchHHHHHhCCceeeeecCCCcccCCCCCCCCccCChhHHH--HHHHHH-hhCCCcccc
Q 021290 109 GQYISGAILFEETLYQSTTDGKKMVDVLVEQNIVPGIKVDKGLVPLAGSNDESWCQGLDGLA--SRTAAY-YQQGARFAK 185 (314)
Q Consensus 109 ~~~IsGvILfeETl~q~~~dG~~~~~~L~~kGIvPGIKVDkGl~pl~g~~gE~~t~GLDgL~--~R~~~y-~~~Ga~FAK 185 (314)
+..+.|+|++.... +... ...+.++| +|-+=+|....... -..-+.|... ..+++| .+.|.
T Consensus 53 ~~~vdgiii~~~~~-----~~~~-~~~~~~~~-ipvV~~~~~~~~~~-----~~~V~~d~~~~g~~~~~~l~~~g~---- 116 (264)
T cd06274 53 ARQVDALIVAGSLP-----PDDP-YYLCQKAG-LPVVALDRPGDPSR-----FPSVVSDNRDGAAELTRELLAAPP---- 116 (264)
T ss_pred HcCCCEEEEcCCCC-----chHH-HHHHHhcC-CCEEEecCccCCCC-----CCEEEEccHHHHHHHHHHHHHCCC----
Confidence 35689999876432 1112 45567778 48888888753111 1222344432 223333 33443
Q ss_pred cceeeecCCCcCHHHHHHHHHHHHHHHHHHHhCCceeeecceecCCCCcChhHHHHHHHHHHH-----------------
Q 021290 186 WRTVVSIPNGPSALAVREAAWGLARYAAIAQDNGLVPIVEPEILLDGDHGIDRTFEVAQKVWA----------------- 248 (314)
Q Consensus 186 WRsVi~i~~~Ps~~aI~~na~~LAryAaicQ~~GLVPIVEPEVl~dgdH~i~~c~~vte~VL~----------------- 248 (314)
|.+.-+.+.+...... ....-|-..|+++|+ | ++++....++.+.+......++.|.
T Consensus 117 -~~i~~i~~~~~~~~~~---~R~~gf~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ai~~~~d~~A 190 (264)
T cd06274 117 -EEVLFLGGLPELSPSR---ERLAGFRQALADAGL-P-VQPDWIYAEGYSPESGYQLMAELLARLGRLPRALFTTSYTLL 190 (264)
T ss_pred -CcEEEEeCCCcccchH---HHHHHHHHHHHHcCC-C-CCcceeecCCCChHHHHHHHHHHHccCCCCCcEEEEcChHHH
Confidence 3444444434322222 233445666899996 2 2344444555565555554444432
Q ss_pred -HHHHHHHhCCcccccccc--------ccccccCCCCCCCCCChHHHHHHHHHHhhccC
Q 021290 249 -EVFFYLAENNVMFEGILL--------KPSMVTPGAECKEKATPQQVAEYTLKLLHRRI 298 (314)
Q Consensus 249 -~vf~~L~~~~V~lEG~lL--------KPnMV~pG~~~~~~~s~eeVA~~Tv~~L~rtV 298 (314)
.+.++|+++|+...+-+- --.+..|+.. +-...+++++...+++|.+.+
T Consensus 191 ~g~~~al~~~g~~ip~dv~v~g~d~~~~~~~~~~~lt-ti~~~~~~~g~~a~~~l~~~~ 248 (264)
T cd06274 191 EGVLRFLRERPGLAPSDLRIATFDDHPLLDFLPFPVH-SVPQDHEALAEAAFELALAAL 248 (264)
T ss_pred HHHHHHHHHcCCCCCcceEEEEeCCHHHHHhcCCCce-EEeCCHHHHHHHHHHHHHHHh
Confidence 456788888875432110 1233445544 356678999999998887644
No 27
>cd00635 PLPDE_III_YBL036c_like Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzymes, YBL036c-like proteins. This family contains mostly uncharacterized proteins, widely distributed among eukaryotes, bacteria and archaea, that bear similarity to the yeast hypothetical protein YBL036c, which is homologous to a Pseudomonas aeruginosa gene that is co-transcribed with a known proline biosynthetic gene. YBL036c is a single domain monomeric protein with a typical TIM barrel fold. It binds the PLP cofactor and has been shown to exhibit amino acid racemase activity. The YBL036c structure is similar to the N-terminal domain of the fold type III PLP-dependent enzymes, bacterial alanine racemase and eukaryotic ornithine decarboxylase, which are two-domain dimeric proteins. The lack of a second domain in YBL036c may explain limited D- to L-alanine racemase or non-specific racemase activity.
Probab=25.52 E-value=3.2e+02 Score=24.56 Aligned_cols=86 Identities=16% Similarity=0.118 Sum_probs=51.5
Q ss_pred ceeeeecCCCcccCCCCCCCCccCChhHHHHHHHHHhhCCCcccccceeeec-CCCcCHHHHHHHHHHHHHHHHHHHhCC
Q 021290 141 IVPGIKVDKGLVPLAGSNDESWCQGLDGLASRTAAYYQQGARFAKWRTVVSI-PNGPSALAVREAAWGLARYAAIAQDNG 219 (314)
Q Consensus 141 IvPGIKVDkGl~pl~g~~gE~~t~GLDgL~~R~~~y~~~Ga~FAKWRsVi~i-~~~Ps~~aI~~na~~LAryAaicQ~~G 219 (314)
+-..||||+|..+ +.-|..+ +.+..+.+++.++ ..-+.+.+... ++........++...+...+..+++.|
T Consensus 117 ~~v~lkvdtG~~~--~R~G~~~-~~~~~~~~~i~~~-----~~l~~~Gi~sh~s~~~~~~~~~~~~~~~~~~~~~l~~~~ 188 (222)
T cd00635 117 LDVLVQVNIGGEE--SKSGVAP-EELEELLEEIAAL-----PNLRIRGLMTIAPLTEDPEEVRPYFRELRELRDELGAKG 188 (222)
T ss_pred CcEEEEEecCCCC--CCCCCCH-HHHHHHHHHHHcC-----CCCcEEEEEEECCCCCChHHHHHHHHHHHHHHHHHHHhc
Confidence 4458999999532 2224433 2244555554432 22344445554 334455567778888888888788775
Q ss_pred -ceeeecceecCCCCcChh
Q 021290 220 -LVPIVEPEILLDGDHGID 237 (314)
Q Consensus 220 -LVPIVEPEVl~dgdH~i~ 237 (314)
+-+ ++|.+-|..+.+
T Consensus 189 g~~~---~~is~G~t~~~~ 204 (222)
T cd00635 189 GVNL---KELSMGMSGDFE 204 (222)
T ss_pred CCCC---CEEECcccHhHH
Confidence 422 678888888875
No 28
>TIGR00542 hxl6Piso_put hexulose-6-phosphate isomerase, putative. This family is conserved at better than 40 % identity among the four known examples from three species: Escherichia coli (SgbU and SgaU), Haemophilus influenzae, and Mycoplasma pneumoniae. The rarity of the family, high level of conservation, and proposed catabolic role suggests lateral transfer may be a part of the evolutionary history of this protein.
Probab=24.11 E-value=5.6e+02 Score=23.49 Aligned_cols=89 Identities=16% Similarity=0.133 Sum_probs=44.2
Q ss_pred hHHHHHhCCcee-eeecCC-CcccCCCCCCCCccCChhHHHHHHHHHhhCCCcccccceeeecC----CCcC---HHHHH
Q 021290 132 MVDVLVEQNIVP-GIKVDK-GLVPLAGSNDESWCQGLDGLASRTAAYYQQGARFAKWRTVVSIP----NGPS---ALAVR 202 (314)
Q Consensus 132 ~~~~L~~kGIvP-GIKVDk-Gl~pl~g~~gE~~t~GLDgL~~R~~~y~~~Ga~FAKWRsVi~i~----~~Ps---~~aI~ 202 (314)
+.+.|++.|+-. ++-.+- +..++...+.+..-..++.+...+.-..+.||.-- ++.-. .... ...+.
T Consensus 57 ~~~~l~~~gl~i~~~~~~~~~~~~l~~~~~~~r~~~~~~~~~~i~~a~~lG~~~v----~~~~~~~~~~~~~~~~~~~~~ 132 (279)
T TIGR00542 57 LVNAIIETGVRIPSMCLSAHRRFPLGSKDKAVRQQGLEIMEKAIQLARDLGIRTI----QLAGYDVYYEEHDEETRRRFR 132 (279)
T ss_pred HHHHHHHcCCCceeeecCCCccCcCCCcCHHHHHHHHHHHHHHHHHHHHhCCCEE----EecCcccccCcCCHHHHHHHH
Confidence 445666777643 332211 11233221222223456666666666667787521 11111 1111 23344
Q ss_pred HHHHHHHHHHHHHHhCCceeeecce
Q 021290 203 EAAWGLARYAAIAQDNGLVPIVEPE 227 (314)
Q Consensus 203 ~na~~LAryAaicQ~~GLVPIVEPE 227 (314)
++-..+++| +++.|++.-+|+.
T Consensus 133 ~~l~~l~~~---A~~~Gv~l~lE~~ 154 (279)
T TIGR00542 133 EGLKEAVEL---AARAQVTLAVEIM 154 (279)
T ss_pred HHHHHHHHH---HHHcCCEEEEeeC
Confidence 444555555 6799999999974
No 29
>TIGR01227 hutG formimidoylglutamase. Formiminoglutamase, the fourth enzyme of histidine degradation, is similar to arginases and agmatinases. It is often encoded near other enzymes of the histidine degredation pathway: histidine ammonia-lyase, urocanate hydratase, and imidazolonepropionase.
Probab=22.98 E-value=3.5e+02 Score=25.98 Aligned_cols=88 Identities=18% Similarity=0.234 Sum_probs=53.1
Q ss_pred ceeeeecCCCcccCCCCCCCCccCChhHHHHHHHHHhhCCCcccccc-eeeecCCCc-CHHHHHHHHHHHHHHHHHHHhC
Q 021290 141 IVPGIKVDKGLVPLAGSNDESWCQGLDGLASRTAAYYQQGARFAKWR-TVVSIPNGP-SALAVREAAWGLARYAAIAQDN 218 (314)
Q Consensus 141 IvPGIKVDkGl~pl~g~~gE~~t~GLDgL~~R~~~y~~~Ga~FAKWR-sVi~i~~~P-s~~aI~~na~~LAryAaicQ~~ 218 (314)
.|-|+-.|.|...-.+.+|- -.|=+.+++...++...+ |. .+....+-+ ....+.+....++...+-..+.
T Consensus 38 ~iiGvP~d~g~~~n~~r~G~--~~gP~aiR~a~~~~~~~~-----~~~~i~D~Gdv~~~~~~~~~~~~~i~~~v~~~~~~ 110 (307)
T TIGR01227 38 ALIGFPLDKGVIRNKGRRGA--RHGPSAIRQALAHLGDWH-----VSELLYDLGDIVIHGDDLEDTQHEIAQTAAALLAD 110 (307)
T ss_pred EEEeeccCccccCCCCCcCh--hHCHHHHHHHHHhccccC-----CCCEEEeCCCCccCchhHHHHHHHHHHHHHHHHhc
Confidence 47788888887531122222 356667766554432111 11 244444432 2245677778888887778889
Q ss_pred CceeeecceecCCCCcChhHHH
Q 021290 219 GLVPIVEPEILLDGDHGIDRTF 240 (314)
Q Consensus 219 GLVPIVEPEVl~dgdH~i~~c~ 240 (314)
|.+||+ +-|||++.-..
T Consensus 111 g~~Pi~-----lGGdHsit~~~ 127 (307)
T TIGR01227 111 HRVPVI-----LGGGHSIAYAT 127 (307)
T ss_pred CCeEEE-----ECCcchhHHHH
Confidence 999966 99999987654
No 30
>PRK06105 aminotransferase; Provisional
Probab=22.83 E-value=1.6e+02 Score=29.88 Aligned_cols=44 Identities=14% Similarity=0.242 Sum_probs=28.6
Q ss_pred HHHhCCceeeeccee------cCCCCcChhHHHHHHHHHHHHHHHHHHhC
Q 021290 214 IAQDNGLVPIVEPEI------LLDGDHGIDRTFEVAQKVWAEVFFYLAEN 257 (314)
Q Consensus 214 icQ~~GLVPIVEPEV------l~dgdH~i~~c~~vte~VL~~vf~~L~~~ 257 (314)
-|.++|+.--.--.+ |.-.+++|++..+..+++|.++...+.+-
T Consensus 408 ~~~~~Gvl~~~~g~~i~l~Ppl~it~~eid~~~~~l~~~l~~~~~~~~~~ 457 (460)
T PRK06105 408 AAHEHGVISRAMGDTLAFCPPLIITAAQVDEMVDRFGRALDDVAAWVAAG 457 (460)
T ss_pred HHHHCCeEEEecCCEEEEECCCccCHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 378889764221122 12257788888888888888877776653
No 31
>cd01422 MGS Methylglyoxal synthase catalyzes the enolization of dihydroxyacetone phosphate (DHAP) to produce methylglyoxal. The first part of the catalytic mechanism is believed to be similar to TIM (triosephosphate isomerase) in that both enzymes utilize DHAP to form an ene-diolate phosphate intermediate. In MGS, the second catalytic step is characterized by the elimination of phosphate and collapse of the enediolate to form methylglyoxal instead of reprotonation to form the isomer glyceraldehyde 3-phosphate, as in TIM. This is the first reaction in the methylglyoxal bypass of the Embden-Myerhoff glycolytic pathway and is believed to provide physiological benefits under non-ideal growth conditions in bacteria.
Probab=22.74 E-value=2.1e+02 Score=23.76 Aligned_cols=84 Identities=21% Similarity=0.262 Sum_probs=53.7
Q ss_pred cchHHHHHHHHHHhcCC--CCceEeecCCCcchHHHhhh-cCCCCCh------hhhhhhhhhcccCCCCCCceeEEeecc
Q 021290 49 GSYADELVKTAKTVASP--GRGILAMDESNATCGKRLAS-IGLENTE------ANRQAYRTLLVTAPGLGQYISGAILFE 119 (314)
Q Consensus 49 ~~~~~eL~~tA~~i~a~--GKGIlA~DES~gt~~Krl~~-iGvente------~nr~~yR~ll~ttp~l~~~IsGvILfe 119 (314)
...++|+...|+++..- |-.|.| ++.+.+.|+. .|++-+. +.+...=++| .+..|..||-|.
T Consensus 8 d~dK~~~~~~a~~~~~ll~Gf~i~A----T~gTa~~L~~~~Gi~v~~vk~~~~~g~~~i~~~i-----~~g~i~~VInt~ 78 (115)
T cd01422 8 DNKKEDLVEFVKQHQELLSRHRLVA----TGTTGLLIQEATGLTVNRMKSGPLGGDQQIGALI-----AEGEIDAVIFFR 78 (115)
T ss_pred ccchHHHHHHHHHHHHHhcCCEEEE----echHHHHHHHhhCCcEEEEecCCCCchhHHHHHH-----HcCceeEEEEcC
Confidence 45788999999999887 888987 7889999998 7875432 2222122222 156888998886
Q ss_pred cc-cccc-ccCCcchHHHHHhCCc
Q 021290 120 ET-LYQS-TTDGKKMVDVLVEQNI 141 (314)
Q Consensus 120 ET-l~q~-~~dG~~~~~~L~~kGI 141 (314)
.- -.+. ..||..+...--+.+|
T Consensus 79 ~~~~~~~~~~dg~~iRr~a~~~~I 102 (115)
T cd01422 79 DPLTAQPHEPDVKALLRLCDVYNI 102 (115)
T ss_pred CCCCCCcccccHHHHHHHHHHcCC
Confidence 53 2122 4566555544444554
No 32
>PRK10014 DNA-binding transcriptional repressor MalI; Provisional
Probab=22.44 E-value=6.1e+02 Score=23.29 Aligned_cols=166 Identities=14% Similarity=0.158 Sum_probs=85.4
Q ss_pred CCceeEEeeccccccccccCCcchHHHHHhCCceeeeecCCCcccCCCCCCCCccCChhHH--HHHHH-HHhhCCCcccc
Q 021290 109 GQYISGAILFEETLYQSTTDGKKMVDVLVEQNIVPGIKVDKGLVPLAGSNDESWCQGLDGL--ASRTA-AYYQQGARFAK 185 (314)
Q Consensus 109 ~~~IsGvILfeETl~q~~~dG~~~~~~L~~kGIvPGIKVDkGl~pl~g~~gE~~t~GLDgL--~~R~~-~y~~~Ga~FAK 185 (314)
.+.+-|+|++..+. +..+..+.|+++|| |-|=+|....+ . + ...-+.|+- ...+. ...+.|
T Consensus 118 ~~~vdgiIi~~~~~-----~~~~~~~~l~~~~i-PvV~~~~~~~~-~---~-~~~V~~D~~~~~~~a~~~L~~~G----- 181 (342)
T PRK10014 118 NQGVDGVVIAGAAG-----SSDDLREMAEEKGI-PVVFASRASYL-D---D-VDTVRPDNMQAAQLLTEHLIRNG----- 181 (342)
T ss_pred hCCCCEEEEeCCCC-----CcHHHHHHHhhcCC-CEEEEecCCCC-C---C-CCEEEeCCHHHHHHHHHHHHHCC-----
Confidence 45689999986432 12345667777774 77777764211 1 1 111223321 22232 333455
Q ss_pred cceeeecCCCcCHHHHHHHHHHHHHHHHHHHhCCceeeecceecCCCCcChhHHHHHHHHHHH-----------------
Q 021290 186 WRTVVSIPNGPSALAVREAAWGLARYAAIAQDNGLVPIVEPEILLDGDHGIDRTFEVAQKVWA----------------- 248 (314)
Q Consensus 186 WRsVi~i~~~Ps~~aI~~na~~LAryAaicQ~~GLVPIVEPEVl~dgdH~i~~c~~vte~VL~----------------- 248 (314)
.|.+.-+.+.+..... ..-+.-|-..|+++|+- ++++...+++.+.+..++..++.|.
T Consensus 182 ~~~I~~i~g~~~~~~~---~~R~~Gf~~al~~~g~~--~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~~~nd~~A~ 256 (342)
T PRK10014 182 HQRIAWLGGQSSSLTR---AERVGGYCATLLKFGLP--FHSEWVLECTSSQKQAAEAITALLRHNPTISAVVCYNETIAM 256 (342)
T ss_pred CCEEEEEcCCcccccH---HHHHHHHHHHHHHcCCC--CCcceEecCCCChHHHHHHHHHHHcCCCCCCEEEECCcHHHH
Confidence 4555555433222111 22333455667889953 3455555666676666666555553
Q ss_pred HHHHHHHhCCccccc----------c-cc------ccccccCCCCCCCCCChHHHHHHHHHHhhc
Q 021290 249 EVFFYLAENNVMFEG----------I-LL------KPSMVTPGAECKEKATPQQVAEYTLKLLHR 296 (314)
Q Consensus 249 ~vf~~L~~~~V~lEG----------~-lL------KPnMV~pG~~~~~~~s~eeVA~~Tv~~L~r 296 (314)
.++.+|.++|+.... + +. --.+..|... +-..++++++...++.|..
T Consensus 257 g~~~~l~~~g~~vp~~~~~~~~p~di~vigfd~~~~~~~~~p~lt-tv~~~~~~~g~~a~~~L~~ 320 (342)
T PRK10014 257 GAWFGLLRAGRQSGESGVDRYFEQQVALAAFTDVPEAELDDPPLT-WASTPAREIGRTLADRMMQ 320 (342)
T ss_pred HHHHHHHHcCCCCCCccccccccCceEEEEecCchHHhcCCCCce-eeecCHHHHHHHHHHHHHH
Confidence 356777777765421 0 00 0112223322 2344678888888887754
No 33
>COG2861 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=21.71 E-value=3e+02 Score=26.81 Aligned_cols=57 Identities=12% Similarity=0.068 Sum_probs=43.4
Q ss_pred cCCCcCHHHHHHHHHHHHHHHHHHHhCCceeeecceecCCCCcChhHHHHHHHHHHHHHHHHHHhCCccccc
Q 021290 192 IPNGPSALAVREAAWGLARYAAIAQDNGLVPIVEPEILLDGDHGIDRTFEVAQKVWAEVFFYLAENNVMFEG 263 (314)
Q Consensus 192 i~~~Ps~~aI~~na~~LAryAaicQ~~GLVPIVEPEVl~dgdH~i~~c~~vte~VL~~vf~~L~~~~V~lEG 263 (314)
+++.-+..+|..|-+.+.+|| +++|-+= -+ . +....|-+||+.-+..|...||.|-+
T Consensus 183 LD~e~~~~~V~kql~~~~~~A---rk~G~ai------~I--G----h~~~~Tv~vl~~~~~~l~~~gIelV~ 239 (250)
T COG2861 183 LDDEDTEAAVLKQLDAAEKLA---RKNGSAI------GI--G----HPHKNTVAVLQQWLDELPARGIELVP 239 (250)
T ss_pred ecCcCCHHHHHHHHHHHHHHH---HhcCceE------Ee--c----CCchhHHHHHHHHHHhCCCCCeEEec
Confidence 356678999999999999995 7898752 11 2 33677888899989999988887744
No 34
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=21.33 E-value=92 Score=32.90 Aligned_cols=30 Identities=23% Similarity=0.369 Sum_probs=24.8
Q ss_pred hHHHHHHHHHHhcCCCCceEeecCCCcchHH
Q 021290 51 YADELVKTAKTVASPGRGILAMDESNATCGK 81 (314)
Q Consensus 51 ~~~eL~~tA~~i~a~GKGIlA~DES~gt~~K 81 (314)
-+..+.+||+++..+.| |+-+||.|+++..
T Consensus 149 aqrQ~VeIArAl~~~ar-llIlDEPTaaLt~ 178 (500)
T COG1129 149 AQRQMVEIARALSFDAR-VLILDEPTAALTV 178 (500)
T ss_pred HHHHHHHHHHHHhcCCC-EEEEcCCcccCCH
Confidence 35589999999999444 9999999998763
No 35
>PF01386 Ribosomal_L25p: Ribosomal L25p family; InterPro: IPR020055 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry models the short-form of the ribosomal L25 protein. The long-form has homology to the general stress protein Ctc of Bacillus subtilis, a mesophile, and ribosomal protein TL5 of Thermus thermophilus, a thermophile. Ribosomal protein L25 of Escherichia coli and Haemophilus influenzae appear to be orthologous but consist only of the N-terminal half of Ctc and TL5. Both short (L25-like) and full-length (CTC-like) members of this family bind the E-loop of bacterial 5S rRNA.; GO: 0003735 structural constituent of ribosome, 0008097 5S rRNA binding, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 2HGQ_Y 2HGJ_Y 2Y19_Z 2WRL_Z 3KIT_Z 2WH2_Z 2WDN_Z 3V25_Z 3HUZ_Z 3KIY_Z ....
Probab=20.30 E-value=95 Score=24.68 Aligned_cols=31 Identities=19% Similarity=0.332 Sum_probs=25.2
Q ss_pred ccccCCcchHHHHHhCCceeeeecCCCcccC
Q 021290 124 QSTTDGKKMVDVLVEQNIVPGIKVDKGLVPL 154 (314)
Q Consensus 124 q~~~dG~~~~~~L~~kGIvPGIKVDkGl~pl 154 (314)
.++..|+.-...|++.|.|||+=-.+|..+.
T Consensus 5 ~R~~~gk~~~r~LR~~G~iPaviYG~~~~~~ 35 (88)
T PF01386_consen 5 KREETGKSAARRLRREGKIPAVIYGKGKESI 35 (88)
T ss_dssp ESSSTSSSHHHHHHHTTEEEEEEEESSEEEE
T ss_pred EcCcCCCHHHHHHHHcCCceEEEECCCCCCE
Confidence 3566789999999999999999777775544
Done!