BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 021291
(314 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|D Chain D, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|G Chain G, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|H Chain H, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|K Chain K, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|L Chain L, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|O Chain O, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|P Chain P, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|S Chain S, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|T Chain T, Paf-Ah Holoenzyme: Lis1ALFA2
Length = 410
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 53/287 (18%), Positives = 114/287 (39%), Gaps = 44/287 (15%)
Query: 14 LRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPS 73
L+GH SV D+ F + +L + + +++WD + + +H H + SV+ P+
Sbjct: 146 LKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRT--MHGHDHNVSSVSIMPN 203
Query: 74 IGLNKVISQGRDGTVKCWDIENGGL----------------SSNPSLTIKTNSYHFCKLS 117
+ ++S RD T+K W+++ G + + +L ++ ++
Sbjct: 204 --GDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVW 261
Query: 118 LV--KEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQLSEVE 175
+V KE A ++ +C + + S + + P ++G + ++
Sbjct: 262 VVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIK 321
Query: 176 IWDLNTAERCTRL--HQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSI 233
+WD++T L H N G F S G+ +L+ +D ++
Sbjct: 322 MWDVSTGMCLMTLVGHDNWVRGVL-FHSGGKF------------------ILSCADDKTL 362
Query: 234 LVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYN 280
VWD +N + + H V L ++ ++G DQ + ++
Sbjct: 363 RVWDYKNKRC-MKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWE 408
Score = 32.7 bits (73), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 26/102 (25%), Positives = 44/102 (43%), Gaps = 16/102 (15%)
Query: 11 VAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIW---------DTVQHRTVSS--SWVH 59
V GHR V V +Q ++ + + +R+W + +HR V SW
Sbjct: 227 VKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAP 286
Query: 60 SAAHGIVSVATGPSIGLNK-----VISQGRDGTVKCWDIENG 96
+++ +S ATG + ++S RD T+K WD+ G
Sbjct: 287 ESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTG 328
>pdb|1R5M|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Sif2
Length = 425
Score = 42.4 bits (98), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 43/89 (48%), Gaps = 5/89 (5%)
Query: 10 PVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVA 69
P L GH ++ + F+ T +L + + G LRIW + + + HS S+
Sbjct: 239 PTGKLIGHHGPISVLEFNDTNKLLLSASDDGTLRIWHGGNGNSQNCFYGHSQ-----SIV 293
Query: 70 TGPSIGLNKVISQGRDGTVKCWDIENGGL 98
+ +G +KVIS DG+V+ W ++ L
Sbjct: 294 SASWVGDDKVISCSMDGSVRLWSLKQNTL 322
>pdb|3MKS|B Chain B, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN
ALLOSTERIC Inhibitor Scf-I2
pdb|3MKS|D Chain D, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN
ALLOSTERIC Inhibitor Scf-I2
pdb|3V7D|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Psic1 Peptide Complex
pdb|3V7D|D Chain D, Crystal Structure Of Scskp1-Sccdc4-Psic1 Peptide Complex
Length = 464
Score = 42.4 bits (98), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 31/95 (32%), Positives = 44/95 (46%), Gaps = 8/95 (8%)
Query: 6 PPPDP--VAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAH 63
P +P V VLRGH ASV V H I+ +G+ L +WD Q + + + H
Sbjct: 256 PEENPYFVGVLRGHMASVRTVSGHGN--IVVSGSYDNTLIVWDVAQMKCLYIL----SGH 309
Query: 64 GIVSVATGPSIGLNKVISQGRDGTVKCWDIENGGL 98
+T + IS D T++ WD+ENG L
Sbjct: 310 TDRIYSTIYDHERKRCISASMDTTIRIWDLENGEL 344
Score = 31.2 bits (69), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 22/90 (24%), Positives = 35/90 (38%), Gaps = 20/90 (22%)
Query: 14 LRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTV-------SSSWVHSAAHGIV 66
LRGH SV C + G +R++D++ + + W AHG +
Sbjct: 117 LRGHMTSVI-TCLQFEDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGGI 175
Query: 67 SVATGPSIGLNKVISQGRDGTVKCWDIENG 96
++S D TV+ WDI+ G
Sbjct: 176 ------------LVSGSTDRTVRVWDIKKG 193
Score = 30.8 bits (68), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 34/176 (19%), Positives = 67/176 (38%), Gaps = 22/176 (12%)
Query: 11 VAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVAT 70
+ +L GH + + + + + +RIWD + + H+A G++ ++
Sbjct: 303 LYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTLQGHTALVGLLRLSD 362
Query: 71 GPSIGLNKVISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYAN----A 126
++S DG+++ WD + + SYH LS + Y +
Sbjct: 363 ------KFLVSAAADGSIRGWDANDYS---------RKFSYHHTNLSAITTFYVSDNILV 407
Query: 127 KQANEPKDCYEREVGETVDTDSLCDSKD--DVPAEGPKYM-AVAGEQLSEVEIWDL 179
+ + Y G+ V + L D+ V +G + AV + S +EI D
Sbjct: 408 SGSENQFNIYNLRSGKLVHANILKDADQIWSVNFKGKTLVAAVEKDGQSFLEILDF 463
>pdb|1NEX|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex
pdb|1NEX|D Chain D, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex
Length = 464
Score = 42.0 bits (97), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 31/95 (32%), Positives = 44/95 (46%), Gaps = 8/95 (8%)
Query: 6 PPPDP--VAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAH 63
P +P V VLRGH ASV V H I+ +G+ L +WD Q + + + H
Sbjct: 256 PEENPYFVGVLRGHXASVRTVSGHGN--IVVSGSYDNTLIVWDVAQXKCLYIL----SGH 309
Query: 64 GIVSVATGPSIGLNKVISQGRDGTVKCWDIENGGL 98
+T + IS D T++ WD+ENG L
Sbjct: 310 TDRIYSTIYDHERKRCISASXDTTIRIWDLENGEL 344
Score = 31.2 bits (69), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 22/90 (24%), Positives = 35/90 (38%), Gaps = 20/90 (22%)
Query: 14 LRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTV-------SSSWVHSAAHGIV 66
LRGH SV C + G +R++D++ + + W AHG +
Sbjct: 117 LRGHXTSVI-TCLQFEDNYVITGADDKXIRVYDSINKKFLLQLSGHDGGVWALKYAHGGI 175
Query: 67 SVATGPSIGLNKVISQGRDGTVKCWDIENG 96
++S D TV+ WDI+ G
Sbjct: 176 ------------LVSGSTDRTVRVWDIKKG 193
Score = 29.6 bits (65), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 34/176 (19%), Positives = 66/176 (37%), Gaps = 22/176 (12%)
Query: 11 VAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVAT 70
+ +L GH + + + + + +RIWD + H+A G++ ++
Sbjct: 303 LYILSGHTDRIYSTIYDHERKRCISASXDTTIRIWDLENGELXYTLQGHTALVGLLRLSD 362
Query: 71 GPSIGLNKVISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYAN----A 126
++S DG+++ WD + + SYH LS + Y +
Sbjct: 363 ------KFLVSAAADGSIRGWDANDYS---------RKFSYHHTNLSAITTFYVSDNILV 407
Query: 127 KQANEPKDCYEREVGETVDTDSLCDSKD--DVPAEGPKYM-AVAGEQLSEVEIWDL 179
+ + Y G+ V + L D+ V +G + AV + S +EI D
Sbjct: 408 SGSENQFNIYNLRSGKLVHANILKDADQIWSVNFKGKTLVAAVEKDGQSFLEILDF 463
>pdb|1ERJ|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|B Chain B, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|C Chain C, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
Length = 393
Score = 41.2 bits (95), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 42/89 (47%), Gaps = 6/89 (6%)
Query: 11 VAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVAT 70
V +L+GH + + + + L +G+ +RIWD RT S S G+ +VA
Sbjct: 158 VMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDL---RTGQCSLTLSIEDGVTTVAV 214
Query: 71 GPSIGLNKVISQGR-DGTVKCWDIENGGL 98
P G K I+ G D V+ WD E G L
Sbjct: 215 SPGDG--KYIAAGSLDRAVRVWDSETGFL 241
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 55/248 (22%), Positives = 96/248 (38%), Gaps = 21/248 (8%)
Query: 21 VTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVI 80
+ VCF L G +RIWD + V H I S+ PS +K++
Sbjct: 126 IRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHE--QDIYSLDYFPS--GDKLV 181
Query: 81 SQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREV 140
S D TV+ WD+ G S S+ + +S Y A + ++ E
Sbjct: 182 SGSGDRTVRIWDLRTGQCSLTLSIEDGVTT---VAVSPGDGKYIAAGSLDRAVRVWDSET 238
Query: 141 G---ETVDTDSLC-----DSKDDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNS 192
G E +D+++ DS V V+G V++W+L A + +
Sbjct: 239 GFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPN 298
Query: 193 CGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHL 252
G + ++V + +Q +L+G +D +L WD + G PL ++ H
Sbjct: 299 SGTCEVTYIGHKDFVLSV-----ATTQNDEYILSGSKDRGVLFWD-KKSGNPLLMLQGHR 352
Query: 253 EPVLCLSI 260
V+ +++
Sbjct: 353 NSVISVAV 360
>pdb|3MKQ|A Chain A, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
pdb|3MKQ|C Chain C, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
pdb|3MKQ|E Chain E, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
Length = 814
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 27/41 (65%)
Query: 11 VAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHR 51
VA L GH ++V+ FH T PI+ +G+ G L+IW++ ++
Sbjct: 221 VATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYK 261
Score = 29.3 bits (64), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 49/251 (19%), Positives = 90/251 (35%), Gaps = 61/251 (24%)
Query: 9 DPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSV 68
+ V H + + H TKP + +G+ +++W+ + + ++ H ++ V
Sbjct: 88 EKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTF-EGHEHFVMCV 146
Query: 69 ATGPSIGLNKVISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQ 128
A P + S D TVK W + S P+ T+ T
Sbjct: 147 AFNPK-DPSTFASGCLDRTVKVWSLG----QSTPNFTLTTGQ------------------ 183
Query: 129 ANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRL 188
ER V D P YM A + L+ ++IWD T
Sbjct: 184 --------ERGVNYV----------DYYPLPDKPYMITASDDLT-IKIWDYQT------- 217
Query: 189 HQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAM 248
SC + +G ++ + P+ +++G EDG++ +W+ + T +
Sbjct: 218 --KSCVATL----EGHMSNVSFAVFHPT----LPIIISGSEDGTLKIWNSSTYKVEKT-L 266
Query: 249 KVHLEPVLCLS 259
V LE C++
Sbjct: 267 NVGLERSWCIA 277
>pdb|2YNP|A Chain A, Yeast Betaprime Cop 1-604 With Ktktn Motif
Length = 604
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 27/41 (65%)
Query: 11 VAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHR 51
VA L GH ++V+ FH T PI+ +G+ G L+IW++ ++
Sbjct: 221 VATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYK 261
Score = 30.0 bits (66), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 48/251 (19%), Positives = 88/251 (35%), Gaps = 61/251 (24%)
Query: 9 DPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSV 68
+ V H + + H TKP + +G+ +++W+ + + ++ H ++ V
Sbjct: 88 EKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTF-EGHEHFVMCV 146
Query: 69 ATGPSIGLNKVISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQ 128
A P + S D TVK W + S P+ T+ T
Sbjct: 147 AFNPK-DPSTFASGCLDRTVKVWSLG----QSTPNFTLTTGQ------------------ 183
Query: 129 ANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRL 188
ER V D P YM A + L+ ++IWD T L
Sbjct: 184 --------ERGVNYV----------DYYPLPDKPYMITASDDLT-IKIWDYQTKSCVATL 224
Query: 189 HQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAM 248
+G ++ + P+ +++G EDG++ +W+ + T +
Sbjct: 225 -------------EGHMSNVSFAVFHPTLPI----IISGSEDGTLKIWNSSTYKVEKT-L 266
Query: 249 KVHLEPVLCLS 259
V LE C++
Sbjct: 267 NVGLERSWCIA 277
>pdb|2YNO|A Chain A, Yeast Betaprime Cop 1-304h6
pdb|2YNO|B Chain B, Yeast Betaprime Cop 1-304h6
Length = 310
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 27/41 (65%)
Query: 11 VAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHR 51
VA L GH ++V+ FH T PI+ +G+ G L+IW++ ++
Sbjct: 221 VATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYK 261
Score = 30.8 bits (68), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 53/274 (19%), Positives = 98/274 (35%), Gaps = 62/274 (22%)
Query: 9 DPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSV 68
+ V H + + H TKP + +G+ +++W+ + + ++ H ++ V
Sbjct: 88 EKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTF-EGHEHFVMCV 146
Query: 69 ATGPSIGLNKVISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQ 128
A P + S D TVK W + S P+ T+ T
Sbjct: 147 AFNPK-DPSTFASGCLDRTVKVWSLGQ----STPNFTLTTGQ------------------ 183
Query: 129 ANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRL 188
ER V D P YM A + L+ ++IWD T
Sbjct: 184 --------ERGVNYV----------DYYPLPDKPYMITASDDLT-IKIWDYQT------- 217
Query: 189 HQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAM 248
SC + +G ++ + P+ +++G EDG++ +W+ + T +
Sbjct: 218 --KSCVA----TLEGHMSNVSFAVFHPT----LPIIISGSEDGTLKIWNSSTYKVEKT-L 266
Query: 249 KVHLEPVLCLSIDESCNGG-ISGGADQKIVLYNL 281
V LE C++ + I+ G D + +L
Sbjct: 267 NVGLERSWCIATHPTGRKNYIASGFDNGFTVLSL 300
>pdb|2YNN|A Chain A, Yeast Betaprime Cop 1-304 With Ktktn Motif
Length = 304
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 27/41 (65%)
Query: 11 VAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHR 51
VA L GH ++V+ FH T PI+ +G+ G L+IW++ ++
Sbjct: 221 VATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYK 261
Score = 30.8 bits (68), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 53/274 (19%), Positives = 98/274 (35%), Gaps = 62/274 (22%)
Query: 9 DPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSV 68
+ V H + + H TKP + +G+ +++W+ + + ++ H ++ V
Sbjct: 88 EKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTF-EGHEHFVMCV 146
Query: 69 ATGPSIGLNKVISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQ 128
A P + S D TVK W + S P+ T+ T
Sbjct: 147 AFNPK-DPSTFASGCLDRTVKVWSLGQ----STPNFTLTTGQ------------------ 183
Query: 129 ANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRL 188
ER V D P YM A + L+ ++IWD T
Sbjct: 184 --------ERGVNYV----------DYYPLPDKPYMITASDDLT-IKIWDYQT------- 217
Query: 189 HQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAM 248
SC + +G ++ + P+ +++G EDG++ +W+ + T +
Sbjct: 218 --KSCVA----TLEGHMSNVSFAVFHPT----LPIIISGSEDGTLKIWNSSTYKVEKT-L 266
Query: 249 KVHLEPVLCLSIDESCNGG-ISGGADQKIVLYNL 281
V LE C++ + I+ G D + +L
Sbjct: 267 NVGLERSWCIATHPTGRKNYIASGFDNGFTVLSL 300
>pdb|3DM0|A Chain A, Maltose Binding Protein Fusion With Rack1 From A. Thaliana
Length = 694
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 48/208 (23%), Positives = 80/208 (38%), Gaps = 21/208 (10%)
Query: 14 LRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPS 73
L GH V DV +G+ GELR+WD VS+ ++SVA S
Sbjct: 426 LTGHSHFVEDVVLSSDGQFALSGSWDGELRLWDLAAG--VSTRRFVGHTKDVLSVAF--S 481
Query: 74 IGLNKVISQGRDGTVKCWD--------IENGGLSSNPSLTIKTNSYHFCKLSLVKEPYAN 125
+ +++S RD T+K W+ I GG ++ S + + ++V +
Sbjct: 482 LDNRQIVSASRDRTIKLWNTLGECKYTISEGGEGHRDWVSCVRFSPNTLQPTIVSASWDK 541
Query: 126 AKQANEPKDCYERE--VGETVDTDSLCDSKDDVPAEGPKYMAVAGEQLSEVEIWDLNTAE 183
+ +C R G T ++ S D + +G + V +WDL +
Sbjct: 542 TVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDGS-------LCASGGKDGVVLLWDLAEGK 594
Query: 184 RCTRLHQNSCGGSPNFSSKGRGMCMAVQ 211
+ L NS + FS +C A +
Sbjct: 595 KLYSLEANSVIHALCFSPNRYWLCAATE 622
>pdb|2PM9|A Chain A, Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT OF THE
Copii Vesicular Coat
Length = 416
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/109 (29%), Positives = 45/109 (41%), Gaps = 13/109 (11%)
Query: 176 IWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILV 235
IWDL + L S PN G ++V + P S D SIL+
Sbjct: 192 IWDLKAKKEVIHLSYTS----PN---SGIKQQLSVVEWHPKNSTRVATATGSDNDPSILI 244
Query: 236 WDIRNPGIPLTAMKV-HLEPVLCLSI---DESCNGGISGGADQKIVLYN 280
WD+RN PL + H + +L L DE +S G D ++L+N
Sbjct: 245 WDLRNANTPLQTLNQGHQKGILSLDWCHQDEHL--LLSSGRDNTVLLWN 291
>pdb|4AOW|A Chain A, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
pdb|4AOW|B Chain B, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
pdb|4AOW|C Chain C, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
Length = 340
Score = 38.1 bits (87), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 38/83 (45%), Gaps = 4/83 (4%)
Query: 10 PVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVA 69
P LRGH V+DV +G+ G LR+WD T H+ ++SVA
Sbjct: 78 PQRALRGHSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHT--KDVLSVA 135
Query: 70 TGPSIGLNKVISQGRDGTVKCWD 92
S +++S RD T+K W+
Sbjct: 136 F--SSDNRQIVSGSRDKTIKLWN 156
Score = 31.6 bits (70), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 52/233 (22%), Positives = 87/233 (37%), Gaps = 33/233 (14%)
Query: 16 GHRASVTDVCFHQTKPILFAGTTGGELRIWDT--VQHRTVSSSWVHSAAHGIVSVATGPS 73
GH V V F + +G+ +++W+T V TV S + + V P+
Sbjct: 126 GHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQD---ESHSEWVSCVRFSPN 182
Query: 74 IGLNKVISQGRDGTVKCWDIENGGLSSN--------PSLTIKTNSYHFCKLSLVKEPYAN 125
++S G D VK W++ N L +N ++T+ + C S K+ A
Sbjct: 183 SSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDG-SLCA-SGGKDGQAM 240
Query: 126 AKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQLSEVEIWDLNTAERC 185
NE K Y + G+ + ++LC S P + ++IWDL
Sbjct: 241 LWDLNEGKHLYTLDGGDII--NALCFS--------PNRYWLCAATGPSIKIWDLEGKIIV 290
Query: 186 TRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDI 238
L Q S S C ++ ++ + AGY D + VW +
Sbjct: 291 DELKQEVISTS---SKAEPPQCTSLAWSADGQT-----LFAGYTDNLVRVWQV 335
Score = 29.3 bits (64), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 34/77 (44%), Gaps = 4/77 (5%)
Query: 224 VLAGYEDGSILVW----DIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLY 279
+L+ D +I++W D N GIP A++ H V + I +SG D + L+
Sbjct: 54 ILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALSGSWDGTLRLW 113
Query: 280 NLDHSTYVLFGIGFVCD 296
+L T +G D
Sbjct: 114 DLTTGTTTRRFVGHTKD 130
>pdb|2ZKQ|AA Chain a, Structure Of A Mammalian Ribosomal 40s Subunit Within An
80s Complex Obtained By Docking Homology Models Of The
Rna And Proteins Into An 8.7 A Cryo-Em Map
Length = 317
Score = 37.7 bits (86), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 38/83 (45%), Gaps = 4/83 (4%)
Query: 10 PVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVA 69
P LRGH V+DV +G+ G LR+WD T H+ ++SVA
Sbjct: 55 PQRALRGHSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHT--KDVLSVA 112
Query: 70 TGPSIGLNKVISQGRDGTVKCWD 92
S +++S RD T+K W+
Sbjct: 113 F--SSDNRQIVSGSRDKTIKLWN 133
Score = 32.0 bits (71), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 52/233 (22%), Positives = 87/233 (37%), Gaps = 33/233 (14%)
Query: 16 GHRASVTDVCFHQTKPILFAGTTGGELRIWDT--VQHRTVSSSWVHSAAHGIVSVATGPS 73
GH V V F + +G+ +++W+T V TV S + + V P+
Sbjct: 103 GHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQD---ESHSEWVSCVRFSPN 159
Query: 74 IGLNKVISQGRDGTVKCWDIENGGLSSN--------PSLTIKTNSYHFCKLSLVKEPYAN 125
++S G D VK W++ N L +N ++T+ + C S K+ A
Sbjct: 160 SSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDG-SLCA-SGGKDGQAM 217
Query: 126 AKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQLSEVEIWDLNTAERC 185
NE K Y + G+ + ++LC S P + ++IWDL
Sbjct: 218 LWDLNEGKHLYTLDGGDII--NALCFS--------PNRYWLCAATGPSIKIWDLEGKIIV 267
Query: 186 TRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDI 238
L Q S S C ++ ++ + AGY D + VW +
Sbjct: 268 DELKQEVISTS---SKAEPPQCTSLAWSADGQT-----LFAGYTDNLVRVWQV 312
Score = 29.6 bits (65), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 34/77 (44%), Gaps = 4/77 (5%)
Query: 224 VLAGYEDGSILVW----DIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLY 279
+L+ D +I++W D N GIP A++ H V + I +SG D + L+
Sbjct: 31 ILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALSGSWDGTLRLW 90
Query: 280 NLDHSTYVLFGIGFVCD 296
+L T +G D
Sbjct: 91 DLTTGTTTRRFVGHTKD 107
>pdb|2OVP|B Chain B, Structure Of The Skp1-Fbw7 Complex
pdb|2OVQ|B Chain B, Structure Of The Skp1-Fbw7-Cyclinedegc Complex
pdb|2OVR|B Chain B, Structure Of The Skp1-Fbw7-Cyclinedegn Complex
Length = 445
Score = 36.6 bits (83), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 59/288 (20%), Positives = 109/288 (37%), Gaps = 46/288 (15%)
Query: 32 ILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCW 91
I+ +G+T L++W+ + + + H+ S + +V+S RD T++ W
Sbjct: 171 IIISGSTDRTLKVWNAETGECIHTLYGHT------STVRCMHLHEKRVVSGSRDATLRVW 224
Query: 92 DIENGG-LSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEP--KDCYEREVGETVDTDS 148
DIE G L + +V Y + +P + C G T S
Sbjct: 225 DIETGQCLHVLMGHVAAVRCVQYDGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYS 284
Query: 149 LCDSKDDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCM 208
L + V+G + + +WD+ T C ++ G + +S GM +
Sbjct: 285 L---------QFDGIHVVSGSLDTSIRVWDVETGN-CI----HTLTGHQSLTS---GMEL 327
Query: 209 AVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMK---VHLEPVLCLSIDESCN 265
+++G D ++ +WDI+ G L ++ H V CL ++ N
Sbjct: 328 KDNI-----------LVSGNADSTVKIWDIKT-GQCLQTLQGPNKHQSAVTCLQFNK--N 373
Query: 266 GGISGGADQKIVLYNLDHSTYVLFGIGFVCDQEGNKFGTTWHIRHLNS 313
I+ D + L++L ++ V + G G W IR N+
Sbjct: 374 FVITSSDDGTVKLWDLKTGEFIR---NLVTLESGGSGGVVWRIRASNT 418
Score = 33.9 bits (76), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 54/232 (23%), Positives = 93/232 (40%), Gaps = 36/232 (15%)
Query: 11 VAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVAT 70
+ L GH ++V C H + + +G+ LR+WD + + H AA V
Sbjct: 192 IHTLYGHTSTVR--CMHLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYDG 249
Query: 71 GPSIGLNKVISQGRDGTVKCWDIENGG-LSSNPSLTIKTNSYHFCKLSLVKEPYANAKQA 129
+V+S D VK WD E L + T + S F + +V + +
Sbjct: 250 ------RRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQFDGIHVVSGSLDTSIRV 303
Query: 130 --NEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTR 187
E +C G T + + KD++ V+G S V+IWD+ T + C +
Sbjct: 304 WDVETGNCIHTLTGHQSLTSGM-ELKDNI--------LVSGNADSTVKIWDIKTGQ-CLQ 353
Query: 188 LHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIR 239
Q PN K + +Q ++ F V+ +DG++ +WD++
Sbjct: 354 TLQG-----PN---KHQSAVTCLQF-----NKNF--VITSSDDGTVKLWDLK 390
>pdb|2PBI|B Chain B, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS
CRYSTAL Structure
pdb|2PBI|D Chain D, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS
CRYSTAL Structure
Length = 354
Score = 35.8 bits (81), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 47/90 (52%), Gaps = 6/90 (6%)
Query: 196 SPNFSSKGRGMCMAVQAYLP--SKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHLE 253
+ N ++K + + M YL S + + +L DG+ +WD+ + G L + H
Sbjct: 140 NENMAAKKKSVAMHTN-YLSACSFTNSDMQILTASGDGTCALWDVES-GQLLQSFHGHGA 197
Query: 254 PVLCLSI--DESCNGGISGGADQKIVLYNL 281
VLCL + E+ N +SGG D+K +++++
Sbjct: 198 DVLCLDLAPSETGNTFVSGGCDKKAMVWDM 227
>pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL2|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL3|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
pdb|2XL3|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
Length = 334
Score = 35.0 bits (79), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 23/102 (22%), Positives = 48/102 (47%), Gaps = 5/102 (4%)
Query: 13 VLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGP 72
+ GH+ ++DV + +L + + L+IWD + + + HS + + P
Sbjct: 82 TISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHS--NYVFCCNFNP 139
Query: 73 SIGLNKVISQGRDGTVKCWDIENGG-LSSNPSLTIKTNSYHF 113
L ++S D +V+ WD++ G L + P+ + ++ HF
Sbjct: 140 QSNL--IVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHF 179
Score = 30.4 bits (67), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 20/86 (23%), Positives = 36/86 (41%), Gaps = 4/86 (4%)
Query: 11 VAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVAT 70
+ L+GH V F+ ++ +G+ +RIWD + + + HS V
Sbjct: 122 LKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNR 181
Query: 71 GPSIGLNKVISQGRDGTVKCWDIENG 96
S+ ++S DG + WD +G
Sbjct: 182 DGSL----IVSSSYDGLCRIWDTASG 203
Score = 29.6 bits (65), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 13/58 (22%), Positives = 32/58 (55%), Gaps = 1/58 (1%)
Query: 224 VLAGYEDGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNL 281
+++ +D ++ +WD+ + G L +K H V C + + N +SG D+ + ++++
Sbjct: 102 LVSASDDKTLKIWDVSS-GKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDV 158
>pdb|2GNQ|A Chain A, Structure Of Wdr5
Length = 336
Score = 35.0 bits (79), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 23/102 (22%), Positives = 48/102 (47%), Gaps = 5/102 (4%)
Query: 13 VLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGP 72
+ GH+ ++DV + +L + + L+IWD + + + HS + + P
Sbjct: 84 TISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHS--NYVFCCNFNP 141
Query: 73 SIGLNKVISQGRDGTVKCWDIENGG-LSSNPSLTIKTNSYHF 113
L ++S D +V+ WD++ G L + P+ + ++ HF
Sbjct: 142 QSNL--IVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHF 181
Score = 30.4 bits (67), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 20/86 (23%), Positives = 36/86 (41%), Gaps = 4/86 (4%)
Query: 11 VAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVAT 70
+ L+GH V F+ ++ +G+ +RIWD + + + HS V
Sbjct: 124 LKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNR 183
Query: 71 GPSIGLNKVISQGRDGTVKCWDIENG 96
S+ ++S DG + WD +G
Sbjct: 184 DGSL----IVSSSYDGLCRIWDTASG 205
Score = 29.6 bits (65), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 13/58 (22%), Positives = 32/58 (55%), Gaps = 1/58 (1%)
Query: 224 VLAGYEDGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNL 281
+++ +D ++ +WD+ + G L +K H V C + + N +SG D+ + ++++
Sbjct: 104 LVSASDDKTLKIWDVSS-GKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDV 160
>pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction
Length = 318
Score = 35.0 bits (79), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 23/101 (22%), Positives = 48/101 (47%), Gaps = 5/101 (4%)
Query: 14 LRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPS 73
+ GH+ ++DV + +L + + L+IWD + + + HS + + P
Sbjct: 67 ISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHS--NYVFCCNFNPQ 124
Query: 74 IGLNKVISQGRDGTVKCWDIENGG-LSSNPSLTIKTNSYHF 113
L ++S D +V+ WD++ G L + P+ + ++ HF
Sbjct: 125 SNL--IVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHF 163
Score = 30.4 bits (67), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 20/86 (23%), Positives = 36/86 (41%), Gaps = 4/86 (4%)
Query: 11 VAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVAT 70
+ L+GH V F+ ++ +G+ +RIWD + + + HS V
Sbjct: 106 LKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNR 165
Query: 71 GPSIGLNKVISQGRDGTVKCWDIENG 96
S+ ++S DG + WD +G
Sbjct: 166 DGSL----IVSSSYDGLCRIWDTASG 187
Score = 29.3 bits (64), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 13/58 (22%), Positives = 32/58 (55%), Gaps = 1/58 (1%)
Query: 224 VLAGYEDGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNL 281
+++ +D ++ +WD+ + G L +K H V C + + N +SG D+ + ++++
Sbjct: 86 LVSASDDKTLKIWDVSS-GKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDV 142
>pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
pdb|2G99|B Chain B, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 308
Score = 35.0 bits (79), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 23/101 (22%), Positives = 48/101 (47%), Gaps = 5/101 (4%)
Query: 14 LRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPS 73
+ GH+ ++DV + +L + + L+IWD + + + HS + + P
Sbjct: 57 ISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHS--NYVFCCNFNPQ 114
Query: 74 IGLNKVISQGRDGTVKCWDIENGG-LSSNPSLTIKTNSYHF 113
L ++S D +V+ WD++ G L + P+ + ++ HF
Sbjct: 115 SNL--IVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHF 153
Score = 30.4 bits (67), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 20/86 (23%), Positives = 36/86 (41%), Gaps = 4/86 (4%)
Query: 11 VAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVAT 70
+ L+GH V F+ ++ +G+ +RIWD + + + HS V
Sbjct: 96 LKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNR 155
Query: 71 GPSIGLNKVISQGRDGTVKCWDIENG 96
S+ ++S DG + WD +G
Sbjct: 156 DGSL----IVSSSYDGLCRIWDTASG 177
Score = 29.3 bits (64), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 13/58 (22%), Positives = 32/58 (55%), Gaps = 1/58 (1%)
Query: 224 VLAGYEDGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNL 281
+++ +D ++ +WD+ + G L +K H V C + + N +SG D+ + ++++
Sbjct: 76 LVSASDDKTLKIWDVSS-GKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDV 132
>pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel
Histone Mark That Supports Euchromatin Maintenance
Length = 318
Score = 35.0 bits (79), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 23/101 (22%), Positives = 48/101 (47%), Gaps = 5/101 (4%)
Query: 14 LRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPS 73
+ GH+ ++DV + +L + + L+IWD + + + HS + + P
Sbjct: 67 ISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHS--NYVFCCNFNPQ 124
Query: 74 IGLNKVISQGRDGTVKCWDIENGG-LSSNPSLTIKTNSYHF 113
L ++S D +V+ WD++ G L + P+ + ++ HF
Sbjct: 125 SNL--IVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHF 163
Score = 30.4 bits (67), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 20/86 (23%), Positives = 36/86 (41%), Gaps = 4/86 (4%)
Query: 11 VAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVAT 70
+ L+GH V F+ ++ +G+ +RIWD + + + HS V
Sbjct: 106 LKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNR 165
Query: 71 GPSIGLNKVISQGRDGTVKCWDIENG 96
S+ ++S DG + WD +G
Sbjct: 166 DGSL----IVSSSYDGLCRIWDTASG 187
Score = 29.3 bits (64), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 13/58 (22%), Positives = 32/58 (55%), Gaps = 1/58 (1%)
Query: 224 VLAGYEDGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNL 281
+++ +D ++ +WD+ + G L +K H V C + + N +SG D+ + ++++
Sbjct: 86 LVSASDDKTLKIWDVSS-GKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDV 142
>pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H68|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|3EG6|A Chain A, Structure Of Wdr5 Bound To Mll1 Peptide
pdb|4ERQ|A Chain A, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|B Chain B, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|C Chain C, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERY|A Chain A, X-Ray Structure Of Wdr5-Mll3 Win Motif Peptide Binary
Complex
pdb|4ERZ|A Chain A, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|B Chain B, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|C Chain C, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ES0|A Chain A, X-Ray Structure Of Wdr5-Setd1b Win Motif Peptide Binary
Complex
pdb|4ESG|A Chain A, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4ESG|B Chain B, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4EWR|A Chain A, X-Ray Structure Of Wdr5-Setd1a Win Motif Peptide Binary
Complex
Length = 312
Score = 34.7 bits (78), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 23/101 (22%), Positives = 48/101 (47%), Gaps = 5/101 (4%)
Query: 14 LRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPS 73
+ GH+ ++DV + +L + + L+IWD + + + HS + + P
Sbjct: 61 ISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHS--NYVFCCNFNPQ 118
Query: 74 IGLNKVISQGRDGTVKCWDIENGG-LSSNPSLTIKTNSYHF 113
L ++S D +V+ WD++ G L + P+ + ++ HF
Sbjct: 119 SNL--IVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHF 157
Score = 30.0 bits (66), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 20/86 (23%), Positives = 36/86 (41%), Gaps = 4/86 (4%)
Query: 11 VAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVAT 70
+ L+GH V F+ ++ +G+ +RIWD + + + HS V
Sbjct: 100 LKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNR 159
Query: 71 GPSIGLNKVISQGRDGTVKCWDIENG 96
S+ ++S DG + WD +G
Sbjct: 160 DGSL----IVSSSYDGLCRIWDTASG 181
Score = 29.3 bits (64), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 13/58 (22%), Positives = 32/58 (55%), Gaps = 1/58 (1%)
Query: 224 VLAGYEDGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNL 281
+++ +D ++ +WD+ + G L +K H V C + + N +SG D+ + ++++
Sbjct: 80 LVSASDDKTLKIWDVSS-GKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDV 136
>pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 311
Score = 34.7 bits (78), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 23/101 (22%), Positives = 48/101 (47%), Gaps = 5/101 (4%)
Query: 14 LRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPS 73
+ GH+ ++DV + +L + + L+IWD + + + HS + + P
Sbjct: 60 ISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHS--NYVFCCNFNPQ 117
Query: 74 IGLNKVISQGRDGTVKCWDIENGG-LSSNPSLTIKTNSYHF 113
L ++S D +V+ WD++ G L + P+ + ++ HF
Sbjct: 118 SNL--IVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHF 156
Score = 30.4 bits (67), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 20/86 (23%), Positives = 36/86 (41%), Gaps = 4/86 (4%)
Query: 11 VAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVAT 70
+ L+GH V F+ ++ +G+ +RIWD + + + HS V
Sbjct: 99 LKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNR 158
Query: 71 GPSIGLNKVISQGRDGTVKCWDIENG 96
S+ ++S DG + WD +G
Sbjct: 159 DGSL----IVSSSYDGLCRIWDTASG 180
Score = 29.3 bits (64), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 13/58 (22%), Positives = 32/58 (55%), Gaps = 1/58 (1%)
Query: 224 VLAGYEDGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNL 281
+++ +D ++ +WD+ + G L +K H V C + + N +SG D+ + ++++
Sbjct: 79 LVSASDDKTLKIWDVSS-GKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDV 135
>pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|C Chain C, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|D Chain D, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|4IA9|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 In Complex
With 2-
Chloro-4-Fluoro-3-Methyl-N-[2-(4-Methylpiperazin-1-Yl)-
5- Nitrophenyl]benzamide
Length = 312
Score = 34.7 bits (78), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 23/101 (22%), Positives = 48/101 (47%), Gaps = 5/101 (4%)
Query: 14 LRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPS 73
+ GH+ ++DV + +L + + L+IWD + + + HS + + P
Sbjct: 61 ISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHS--NYVFCCNFNPQ 118
Query: 74 IGLNKVISQGRDGTVKCWDIENGG-LSSNPSLTIKTNSYHF 113
L ++S D +V+ WD++ G L + P+ + ++ HF
Sbjct: 119 SNL--IVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHF 157
Score = 30.4 bits (67), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 20/86 (23%), Positives = 36/86 (41%), Gaps = 4/86 (4%)
Query: 11 VAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVAT 70
+ L+GH V F+ ++ +G+ +RIWD + + + HS V
Sbjct: 100 LKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNR 159
Query: 71 GPSIGLNKVISQGRDGTVKCWDIENG 96
S+ ++S DG + WD +G
Sbjct: 160 DGSL----IVSSSYDGLCRIWDTASG 181
Score = 29.3 bits (64), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 13/58 (22%), Positives = 32/58 (55%), Gaps = 1/58 (1%)
Query: 224 VLAGYEDGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNL 281
+++ +D ++ +WD+ + G L +K H V C + + N +SG D+ + ++++
Sbjct: 80 LVSASDDKTLKIWDVSS-GKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDV 136
>pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9M|C Chain C, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9N|A Chain A, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2H9N|C Chain C, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2O9K|A Chain A, Wdr5 In Complex With Dimethylated H3k4 Peptide
pdb|2O9K|C Chain C, Wdr5 In Complex With Dimethylated H3k4 Peptide
Length = 313
Score = 34.7 bits (78), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 23/101 (22%), Positives = 48/101 (47%), Gaps = 5/101 (4%)
Query: 14 LRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPS 73
+ GH+ ++DV + +L + + L+IWD + + + HS + + P
Sbjct: 62 ISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHS--NYVFCCNFNPQ 119
Query: 74 IGLNKVISQGRDGTVKCWDIENGG-LSSNPSLTIKTNSYHF 113
L ++S D +V+ WD++ G L + P+ + ++ HF
Sbjct: 120 SNL--IVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHF 158
Score = 30.4 bits (67), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 20/86 (23%), Positives = 36/86 (41%), Gaps = 4/86 (4%)
Query: 11 VAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVAT 70
+ L+GH V F+ ++ +G+ +RIWD + + + HS V
Sbjct: 101 LKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNR 160
Query: 71 GPSIGLNKVISQGRDGTVKCWDIENG 96
S+ ++S DG + WD +G
Sbjct: 161 DGSL----IVSSSYDGLCRIWDTASG 182
Score = 29.3 bits (64), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 13/58 (22%), Positives = 32/58 (55%), Gaps = 1/58 (1%)
Query: 224 VLAGYEDGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNL 281
+++ +D ++ +WD+ + G L +K H V C + + N +SG D+ + ++++
Sbjct: 81 LVSASDDKTLKIWDVSS-GKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDV 137
>pdb|2H9L|A Chain A, Wdr5delta23
pdb|2H9P|A Chain A, Wdr5 In Complex With Trimethylated H3k4 Peptide
Length = 329
Score = 34.7 bits (78), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 23/101 (22%), Positives = 48/101 (47%), Gaps = 5/101 (4%)
Query: 14 LRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPS 73
+ GH+ ++DV + +L + + L+IWD + + + HS + + P
Sbjct: 78 ISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHS--NYVFCCNFNPQ 135
Query: 74 IGLNKVISQGRDGTVKCWDIENGG-LSSNPSLTIKTNSYHF 113
L ++S D +V+ WD++ G L + P+ + ++ HF
Sbjct: 136 SNL--IVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHF 174
Score = 30.4 bits (67), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 20/86 (23%), Positives = 36/86 (41%), Gaps = 4/86 (4%)
Query: 11 VAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVAT 70
+ L+GH V F+ ++ +G+ +RIWD + + + HS V
Sbjct: 117 LKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNR 176
Query: 71 GPSIGLNKVISQGRDGTVKCWDIENG 96
S+ ++S DG + WD +G
Sbjct: 177 DGSL----IVSSSYDGLCRIWDTASG 198
Score = 29.3 bits (64), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 13/58 (22%), Positives = 32/58 (55%), Gaps = 1/58 (1%)
Query: 224 VLAGYEDGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNL 281
+++ +D ++ +WD+ + G L +K H V C + + N +SG D+ + ++++
Sbjct: 97 LVSASDDKTLKIWDVSS-GKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDV 153
>pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3PSL|B Chain B, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3UVK|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll2
pdb|3UVL|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll3
pdb|3UVM|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll4
pdb|3UVN|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVN|C Chain C, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVO|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1b
Length = 318
Score = 34.7 bits (78), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 23/101 (22%), Positives = 48/101 (47%), Gaps = 5/101 (4%)
Query: 14 LRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPS 73
+ GH+ ++DV + +L + + L+IWD + + + HS + + P
Sbjct: 67 ISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHS--NYVFCCNFNPQ 124
Query: 74 IGLNKVISQGRDGTVKCWDIENGG-LSSNPSLTIKTNSYHF 113
L ++S D +V+ WD++ G L + P+ + ++ HF
Sbjct: 125 SNL--IVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHF 163
Score = 30.0 bits (66), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 20/86 (23%), Positives = 36/86 (41%), Gaps = 4/86 (4%)
Query: 11 VAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVAT 70
+ L+GH V F+ ++ +G+ +RIWD + + + HS V
Sbjct: 106 LKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNR 165
Query: 71 GPSIGLNKVISQGRDGTVKCWDIENG 96
S+ ++S DG + WD +G
Sbjct: 166 DGSL----IVSSSYDGLCRIWDTASG 187
Score = 29.3 bits (64), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 13/58 (22%), Positives = 32/58 (55%), Gaps = 1/58 (1%)
Query: 224 VLAGYEDGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNL 281
+++ +D ++ +WD+ + G L +K H V C + + N +SG D+ + ++++
Sbjct: 86 LVSASDDKTLKIWDVSS-GKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDV 142
>pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y)
Length = 315
Score = 34.7 bits (78), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 23/101 (22%), Positives = 48/101 (47%), Gaps = 5/101 (4%)
Query: 14 LRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPS 73
+ GH+ ++DV + +L + + L+IWD + + + HS + + P
Sbjct: 64 ISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHS--NYVFCCNFNPQ 121
Query: 74 IGLNKVISQGRDGTVKCWDIENGG-LSSNPSLTIKTNSYHF 113
L ++S D +V+ WD++ G L + P+ + ++ HF
Sbjct: 122 SNL--IVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHF 160
Score = 30.4 bits (67), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 20/86 (23%), Positives = 36/86 (41%), Gaps = 4/86 (4%)
Query: 11 VAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVAT 70
+ L+GH V F+ ++ +G+ +RIWD + + + HS V
Sbjct: 103 LKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNR 162
Query: 71 GPSIGLNKVISQGRDGTVKCWDIENG 96
S+ ++S DG + WD +G
Sbjct: 163 DGSL----IVSSSYDGLCRIWDTASG 184
Score = 29.3 bits (64), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 13/58 (22%), Positives = 32/58 (55%), Gaps = 1/58 (1%)
Query: 224 VLAGYEDGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNL 281
+++ +D ++ +WD+ + G L +K H V C + + N +SG D+ + ++++
Sbjct: 83 LVSASDDKTLKIWDV-SSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDV 139
>pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX
pdb|2H14|A Chain A, Crystal Of Wdr5 (Apo-Form)
pdb|3P4F|A Chain A, Structural And Biochemical Insights Into Mll1 Core Complex
Assembly And Regulation
Length = 317
Score = 34.7 bits (78), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 23/101 (22%), Positives = 48/101 (47%), Gaps = 5/101 (4%)
Query: 14 LRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPS 73
+ GH+ ++DV + +L + + L+IWD + + + HS + + P
Sbjct: 66 ISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHS--NYVFCCNFNPQ 123
Query: 74 IGLNKVISQGRDGTVKCWDIENGG-LSSNPSLTIKTNSYHF 113
L ++S D +V+ WD++ G L + P+ + ++ HF
Sbjct: 124 SNL--IVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHF 162
Score = 30.0 bits (66), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 20/86 (23%), Positives = 36/86 (41%), Gaps = 4/86 (4%)
Query: 11 VAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVAT 70
+ L+GH V F+ ++ +G+ +RIWD + + + HS V
Sbjct: 105 LKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNR 164
Query: 71 GPSIGLNKVISQGRDGTVKCWDIENG 96
S+ ++S DG + WD +G
Sbjct: 165 DGSL----IVSSSYDGLCRIWDTASG 186
Score = 29.3 bits (64), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 13/58 (22%), Positives = 32/58 (55%), Gaps = 1/58 (1%)
Query: 224 VLAGYEDGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNL 281
+++ +D ++ +WD+ + G L +K H V C + + N +SG D+ + ++++
Sbjct: 85 LVSASDDKTLKIWDVSS-GKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDV 141
>pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f)
Length = 315
Score = 34.7 bits (78), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 23/101 (22%), Positives = 48/101 (47%), Gaps = 5/101 (4%)
Query: 14 LRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPS 73
+ GH+ ++DV + +L + + L+IWD + + + HS + + P
Sbjct: 64 ISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHS--NYVFCCNFNPQ 121
Query: 74 IGLNKVISQGRDGTVKCWDIENGG-LSSNPSLTIKTNSYHF 113
L ++S D +V+ WD++ G L + P+ + ++ HF
Sbjct: 122 SNL--IVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHF 160
Score = 30.0 bits (66), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 20/86 (23%), Positives = 36/86 (41%), Gaps = 4/86 (4%)
Query: 11 VAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVAT 70
+ L+GH V F+ ++ +G+ +RIWD + + + HS V
Sbjct: 103 LKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNR 162
Query: 71 GPSIGLNKVISQGRDGTVKCWDIENG 96
S+ ++S DG + WD +G
Sbjct: 163 DGSL----IVSSSYDGLCRIWDTASG 184
Score = 29.3 bits (64), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 13/58 (22%), Positives = 32/58 (55%), Gaps = 1/58 (1%)
Query: 224 VLAGYEDGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNL 281
+++ +D ++ +WD+ + G L +K H V C + + N +SG D+ + ++++
Sbjct: 83 LVSASDDKTLKIWDV-SSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDV 139
>pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a)
Length = 315
Score = 34.7 bits (78), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 23/101 (22%), Positives = 48/101 (47%), Gaps = 5/101 (4%)
Query: 14 LRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPS 73
+ GH+ ++DV + +L + + L+IWD + + + HS + + P
Sbjct: 64 ISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHS--NYVFCCNFNPQ 121
Query: 74 IGLNKVISQGRDGTVKCWDIENGG-LSSNPSLTIKTNSYHF 113
L ++S D +V+ WD++ G L + P+ + ++ HF
Sbjct: 122 SNL--IVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHF 160
Score = 30.0 bits (66), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 20/86 (23%), Positives = 36/86 (41%), Gaps = 4/86 (4%)
Query: 11 VAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVAT 70
+ L+GH V F+ ++ +G+ +RIWD + + + HS V
Sbjct: 103 LKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNR 162
Query: 71 GPSIGLNKVISQGRDGTVKCWDIENG 96
S+ ++S DG + WD +G
Sbjct: 163 DGSL----IVSSSYDGLCRIWDTASG 184
Score = 29.3 bits (64), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 13/58 (22%), Positives = 32/58 (55%), Gaps = 1/58 (1%)
Query: 224 VLAGYEDGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNL 281
+++ +D ++ +WD+ + G L +K H V C + + N +SG D+ + ++++
Sbjct: 83 LVSASDDKTLKIWDV-SSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDV 139
>pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 34.3 bits (77), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 23/101 (22%), Positives = 48/101 (47%), Gaps = 5/101 (4%)
Query: 14 LRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPS 73
+ GH+ ++DV + +L + + L+IWD + + + HS + + P
Sbjct: 64 ISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHS--NYVFCCNFNPQ 121
Query: 74 IGLNKVISQGRDGTVKCWDIENGG-LSSNPSLTIKTNSYHF 113
L ++S D +V+ WD++ G L + P+ + ++ HF
Sbjct: 122 SNL--IVSGSFDESVRIWDVKTGMCLKTLPAHSDPVSAVHF 160
Score = 29.3 bits (64), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 13/58 (22%), Positives = 32/58 (55%), Gaps = 1/58 (1%)
Query: 224 VLAGYEDGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNL 281
+++ +D ++ +WD+ + G L +K H V C + + N +SG D+ + ++++
Sbjct: 83 LVSASDDKTLKIWDVSS-GKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDV 139
Score = 29.3 bits (64), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 42/191 (21%), Positives = 74/191 (38%), Gaps = 26/191 (13%)
Query: 11 VAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVAT 70
+ L+GH V F+ ++ +G+ +RIWD + + HS V
Sbjct: 103 LKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGMCLKTLPAHSDPVSAVHFNR 162
Query: 71 GPSIGLNKVISQGRDGTVKCWDIENGGL------SSNPSLTIKTNSYHFCKLSLVKEPYA 124
S+ ++S DG + WD +G NP ++ F K S +
Sbjct: 163 DGSL----IVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVS-------FVKFSPNGKYIL 211
Query: 125 NAKQANEPKDCYEREVGETVDT------DSLCDSKDDVPAEGPKYMAVAGEQLSEVEIWD 178
A N+ K ++ G+ + T + C + G K++ V+G + + V IW+
Sbjct: 212 AATLDNDLK-LWDYSKGKCLKTYTGHKNEKYCIFA-NFSVTGGKWI-VSGSEDNMVYIWN 268
Query: 179 LNTAERCTRLH 189
L T E +L
Sbjct: 269 LQTKEIVQKLQ 279
>pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1
Angstrom
pdb|2CO0|C Chain C, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 34.3 bits (77), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 23/101 (22%), Positives = 48/101 (47%), Gaps = 5/101 (4%)
Query: 14 LRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPS 73
+ GH+ ++DV + +L + + L+IWD + + + HS + + P
Sbjct: 64 ISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHS--NYVFCCNFNPQ 121
Query: 74 IGLNKVISQGRDGTVKCWDIENGG-LSSNPSLTIKTNSYHF 113
L ++S D +V+ WD++ G L + P+ + ++ HF
Sbjct: 122 SNL--IVSGSFDESVRIWDVKTGMCLKTLPAHSDPVSAVHF 160
Score = 29.3 bits (64), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 13/58 (22%), Positives = 32/58 (55%), Gaps = 1/58 (1%)
Query: 224 VLAGYEDGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNL 281
+++ +D ++ +WD+ + G L +K H V C + + N +SG D+ + ++++
Sbjct: 83 LVSASDDKTLKIWDVSS-GKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDV 139
Score = 28.9 bits (63), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 20/86 (23%), Positives = 35/86 (40%), Gaps = 4/86 (4%)
Query: 11 VAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVAT 70
+ L+GH V F+ ++ +G+ +RIWD + + HS V
Sbjct: 103 LKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGMCLKTLPAHSDPVSAVHFNR 162
Query: 71 GPSIGLNKVISQGRDGTVKCWDIENG 96
S+ ++S DG + WD +G
Sbjct: 163 DGSL----IVSSSYDGLCRIWDTASG 184
>pdb|3ZEY|7 Chain 7, High-resolution Cryo-electron Microscopy Structure Of The
Trypanosoma Brucei Ribosome
Length = 318
Score = 33.9 bits (76), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 24/91 (26%), Positives = 38/91 (41%), Gaps = 11/91 (12%)
Query: 16 GHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHG-----IVSVAT 70
GH V V F + +G LR+W+ V +H+ + G + V
Sbjct: 107 GHTKDVLSVAFSPDNRQIVSGGRDNALRVWN------VKGECMHTLSRGAHTDWVSCVRF 160
Query: 71 GPSIGLNKVISQGRDGTVKCWDIENGGLSSN 101
PS+ ++S G D VK WD+ G L ++
Sbjct: 161 SPSLDAPVIVSGGWDNLVKVWDLATGRLVTD 191
Score = 32.0 bits (71), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 21/85 (24%), Positives = 38/85 (44%), Gaps = 4/85 (4%)
Query: 10 PVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVA 69
P L GH A V+DV + + LR+W+ + H+ ++SVA
Sbjct: 59 PDRRLEGHSAFVSDVALSNNGNFAVSASWDHSLRLWNLQNGQCQYKFLGHT--KDVLSVA 116
Query: 70 TGPSIGLNKVISQGRDGTVKCWDIE 94
P +++S GRD ++ W+++
Sbjct: 117 FSPDN--RQIVSGGRDNALRVWNVK 139
Score = 27.7 bits (60), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 17/66 (25%), Positives = 30/66 (45%), Gaps = 4/66 (6%)
Query: 31 PILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKC 90
P++ +G +++WD R V+ H+ + + SV P L S +DG +
Sbjct: 167 PVIVSGGWDNLVKVWDLATGRLVTDLKGHT--NYVTSVTVSPDGSL--CASSDKDGVARL 222
Query: 91 WDIENG 96
WD+ G
Sbjct: 223 WDLTKG 228
Score = 27.7 bits (60), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 16/72 (22%), Positives = 35/72 (48%), Gaps = 6/72 (8%)
Query: 212 AYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGG--IS 269
A+ P Q +++G D ++ VW+++ + + H + V C+ S + +S
Sbjct: 116 AFSPDNRQ----IVSGGRDNALRVWNVKGECMHTLSRGAHTDWVSCVRFSPSLDAPVIVS 171
Query: 270 GGADQKIVLYNL 281
GG D + +++L
Sbjct: 172 GGWDNLVKVWDL 183
>pdb|2XZM|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 1
pdb|2XZN|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 2
Length = 343
Score = 33.1 bits (74), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 61/245 (24%), Positives = 107/245 (43%), Gaps = 44/245 (17%)
Query: 65 IVSVATGPSIGLNK----VISQGRDGTVKCWDI---ENGGLSSNPSLTIKTNSYHFCKLS 117
+ S+ G S N+ +IS RD TV W + E G P + +++ L+
Sbjct: 24 VTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLA 83
Query: 118 LVKEP-YANAKQANEP--------KDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAG 168
L +E +A + ++ Y+R VG + S+ S D+ + + AG
Sbjct: 84 LSQENCFAISSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDN------RQILSAG 137
Query: 169 EQLSEVEIWDL------NTAERCTRLHQNSC-GGSPNFSSKGRGMCMAVQAYLPSKSQGF 221
+ E+++W++ ++AE+ SC SP S + VQ + P F
Sbjct: 138 AE-REIKLWNILGECKFSSAEKENHSDWVSCVRYSPIMKSANK-----VQPFAPY----F 187
Query: 222 VNVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNL 281
+V G+ DG + VW+ N I T K H V LSI + +GG D+K++++++
Sbjct: 188 ASV--GW-DGRLKVWNT-NFQIRYT-FKAHESNVNHLSISPNGKYIATGGKDKKLLIWDI 242
Query: 282 DHSTY 286
+ TY
Sbjct: 243 LNLTY 247
Score = 31.6 bits (70), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 35/84 (41%), Gaps = 4/84 (4%)
Query: 10 PVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVA 69
P L GH V+D+ Q + + LR+WD T H + + SVA
Sbjct: 68 PHKALTGHNHFVSDLALSQENCFAISSSWDKTLRLWDLRTGTTYKRFVGHQSE--VYSVA 125
Query: 70 TGPSIGLNKVISQGRDGTVKCWDI 93
P +++S G + +K W+I
Sbjct: 126 FSPDN--RQILSAGAEREIKLWNI 147
>pdb|3T5Q|A Chain A, 3a Structure Of Lassa Virus Nucleoprotein In Complex With
Ssrna
pdb|3T5Q|B Chain B, 3a Structure Of Lassa Virus Nucleoprotein In Complex With
Ssrna
pdb|3T5Q|E Chain E, 3a Structure Of Lassa Virus Nucleoprotein In Complex With
Ssrna
pdb|3T5Q|G Chain G, 3a Structure Of Lassa Virus Nucleoprotein In Complex With
Ssrna
pdb|3T5Q|I Chain I, 3a Structure Of Lassa Virus Nucleoprotein In Complex With
Ssrna
pdb|3T5Q|K Chain K, 3a Structure Of Lassa Virus Nucleoprotein In Complex With
Ssrna
Length = 353
Score = 33.1 bits (74), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 15/29 (51%), Positives = 19/29 (65%), Gaps = 5/29 (17%)
Query: 83 GRDGTVKCWDIENGGLSSN-----PSLTI 106
GRDG V+ WD++N L SN PSLT+
Sbjct: 169 GRDGVVRVWDVKNAELLSNQFGTMPSLTL 197
>pdb|3T5N|A Chain A, 1.8a Crystal Structure Of Lassa Virus Nucleoprotein In
Complex With Ssrna
Length = 354
Score = 33.1 bits (74), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 17/37 (45%), Positives = 22/37 (59%), Gaps = 5/37 (13%)
Query: 75 GLNKVISQGRDGTVKCWDIENGGLSSN-----PSLTI 106
G N+ GRDG V+ WD++N L SN PSLT+
Sbjct: 162 GGNQGARAGRDGVVRVWDVKNAELLSNQFGTMPSLTL 198
>pdb|3IZA|A Chain A, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|B Chain B, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|C Chain C, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|D Chain D, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|E Chain E, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|F Chain F, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|G Chain G, Structure Of An Apoptosome-Procaspase-9 Card Complex
Length = 1263
Score = 32.3 bits (72), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 32/113 (28%), Positives = 47/113 (41%), Gaps = 14/113 (12%)
Query: 10 PVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDT----VQHRTVSSSWVHSAAHG- 64
P+ LRGH V F +L G GE+RIW+ + H S +A HG
Sbjct: 1125 PLHELRGHNGCVRCSAFSVDSTLLATGDDNGEIRIWNVSNGELLHLCAPLSEEGAATHGG 1184
Query: 65 -IVSVATGPSIGLNKVISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKL 116
+ + P + +IS G G +K W++ G S T TN + K+
Sbjct: 1185 WVTDLCFSPDGKM--LISAG--GYIKWWNVVTG----ESSQTFYTNGTNLKKI 1229
>pdb|2QZU|A Chain A, Crystal Structure Of The Putative Sulfatase Yidj From
Bacteroides Fragilis. Northeast Structural Genomics
Consortium Target Bfr123
Length = 491
Score = 32.0 bits (71), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 26/47 (55%), Gaps = 6/47 (12%)
Query: 120 KEPYANAKQANEPKDCYE------REVGETVDTDSLCDSKDDVPAEG 160
K+P+A N P YE +E+ + +D ++LC + D+PA+G
Sbjct: 219 KQPFALVVSXNPPHTGYELVPDRYKEIYKDLDVEALCKGRPDIPAKG 265
>pdb|3MWP|A Chain A, Nucleoprotein Structure Of Lassa Fever Virus
pdb|3MWP|B Chain B, Nucleoprotein Structure Of Lassa Fever Virus
pdb|3MWP|C Chain C, Nucleoprotein Structure Of Lassa Fever Virus
pdb|3MWT|A Chain A, Crystal Structure Of Lassa Fever Virus Nucleoprotein In
Complex With Mn2+
pdb|3MWT|B Chain B, Crystal Structure Of Lassa Fever Virus Nucleoprotein In
Complex With Mn2+
pdb|3MWT|C Chain C, Crystal Structure Of Lassa Fever Virus Nucleoprotein In
Complex With Mn2+
pdb|3MX2|A Chain A, Lassa Fever Virus Nucleoprotein Complexed With Dttp
pdb|3MX2|B Chain B, Lassa Fever Virus Nucleoprotein Complexed With Dttp
pdb|3MX2|C Chain C, Lassa Fever Virus Nucleoprotein Complexed With Dttp
pdb|3MX5|A Chain A, Lassa Fever Virus Nucleoprotein Complexed With Utp
pdb|3MX5|B Chain B, Lassa Fever Virus Nucleoprotein Complexed With Utp
pdb|3MX5|C Chain C, Lassa Fever Virus Nucleoprotein Complexed With Utp
Length = 577
Score = 32.0 bits (71), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 22/37 (59%), Gaps = 5/37 (13%)
Query: 75 GLNKVISQGRDGTVKCWDIENGGLSSN-----PSLTI 106
G N+ GRDG V+ WD++N L +N PSLT+
Sbjct: 156 GGNQGARAGRDGVVRVWDVKNAELLNNQFGTMPSLTL 192
>pdb|1P22|A Chain A, Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex:
Destruction Motif Binding And Lysine Specificity On The
Scfbeta-Trcp1 Ubiquitin Ligase
Length = 435
Score = 31.6 bits (70), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 29/117 (24%), Positives = 52/117 (44%), Gaps = 24/117 (20%)
Query: 166 VAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVL 225
V+G + + ++IWD NT E C R+ G +C+ + ++
Sbjct: 147 VSGLRDNTIKIWDKNTLE-CKRILTGHTGSV---------LCLQYDERV---------II 187
Query: 226 AGYEDGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNG-GISGGADQKIVLYNL 281
G D ++ VWD+ N G L + H E VL L + NG ++ D+ I ++++
Sbjct: 188 TGSSDSTVRVWDV-NTGEMLNTLIHHCEAVLHLRFN---NGMMVTCSKDRSIAVWDM 240
Score = 30.0 bits (66), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 39/85 (45%), Gaps = 8/85 (9%)
Query: 13 VLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGP 72
VL GHRA+V V F + +G +++W+T V + ++ GI +
Sbjct: 251 VLVGHRAAVNVVDFDDKYIVSASGDR--TIKVWNTSTCEFVRT--LNGHKRGIACLQYRD 306
Query: 73 SIGLNKVISQGRDGTVKCWDIENGG 97
+ V+S D T++ WDIE G
Sbjct: 307 RL----VVSGSSDNTIRLWDIECGA 327
Score = 27.7 bits (60), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 16/83 (19%), Positives = 32/83 (38%), Gaps = 8/83 (9%)
Query: 11 VAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVAT 70
V L GH+ + C ++ +G++ +R+WD + G +
Sbjct: 289 VRTLNGHKRGIA--CLQYRDRLVVSGSSDNTIRLWD------IECGACLRVLEGHEELVR 340
Query: 71 GPSIGLNKVISQGRDGTVKCWDI 93
+++S DG +K WD+
Sbjct: 341 CIRFDNKRIVSGAYDGKIKVWDL 363
>pdb|3R3L|A Chain A, Structure Of Np Protein From Lassa Av Strain
pdb|3R3L|B Chain B, Structure Of Np Protein From Lassa Av Strain
pdb|3R3L|C Chain C, Structure Of Np Protein From Lassa Av Strain
Length = 582
Score = 31.6 bits (70), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 19/29 (65%), Gaps = 5/29 (17%)
Query: 83 GRDGTVKCWDIENGGLSSN-----PSLTI 106
GRDG V+ WD++N L +N PSLT+
Sbjct: 156 GRDGVVRVWDVKNAELLNNQFGTMPSLTL 184
>pdb|3IZB|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into
A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae
Translating 80s Ribosome
pdb|3O2Z|T Chain T, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The First 80s In The Asymmetric Unit.
pdb|3O30|T Chain T, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The Second 80s In The Asymmetric Unit.
pdb|3U5C|GG Chain g, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome A
pdb|3U5G|GG Chain g, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome B
Length = 319
Score = 30.8 bits (68), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 22/85 (25%), Positives = 32/85 (37%), Gaps = 4/85 (4%)
Query: 10 PVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVA 69
PV +GH V D + + LR+WD T H + V +
Sbjct: 57 PVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDID 116
Query: 70 TGPSIGLNKVISQGRDGTVKCWDIE 94
S+ +IS RD T+K W I+
Sbjct: 117 KKASM----IISGSRDKTIKVWTIK 137
>pdb|3JYV|R Chain R, Structure Of The 40s Rrna And Proteins And PE TRNA FOR
EUKARYOTIC Ribosome Based On Cryo-Em Map Of Thermomyces
Lanuginosus Ribosome At 8.9a Resolution
Length = 313
Score = 30.8 bits (68), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 23/91 (25%), Positives = 35/91 (38%), Gaps = 4/91 (4%)
Query: 10 PVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVA 69
PV +GH V D + + LR+WD T H + V +
Sbjct: 51 PVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDID 110
Query: 70 TGPSIGLNKVISQGRDGTVKCWDIENGGLSS 100
S+ +IS RD T+K W I+ L++
Sbjct: 111 KKASM----IISGSRDKTIKVWTIKGQCLAT 137
>pdb|1TRJ|A Chain A, Homology Model Of Yeast Rack1 Protein Fitted Into 11.7a
Cryo-em Map Of Yeast 80s Ribosome
Length = 314
Score = 30.8 bits (68), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 22/85 (25%), Positives = 32/85 (37%), Gaps = 4/85 (4%)
Query: 10 PVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVA 69
PV +GH V D + + LR+WD T H + V +
Sbjct: 57 PVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDID 116
Query: 70 TGPSIGLNKVISQGRDGTVKCWDIE 94
S+ +IS RD T+K W I+
Sbjct: 117 KKASM----IISGSRDKTIKVWTIK 137
>pdb|3RFG|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P63
pdb|3RFG|B Chain B, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P63
Length = 319
Score = 30.8 bits (68), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 22/85 (25%), Positives = 32/85 (37%), Gaps = 4/85 (4%)
Query: 10 PVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVA 69
PV +GH V D + + LR+WD T H + V +
Sbjct: 57 PVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDID 116
Query: 70 TGPSIGLNKVISQGRDGTVKCWDIE 94
S+ +IS RD T+K W I+
Sbjct: 117 KKASM----IISGSRDKTIKVWTIK 137
>pdb|3RFH|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|B Chain B, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|C Chain C, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|D Chain D, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
Length = 319
Score = 30.8 bits (68), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 22/85 (25%), Positives = 32/85 (37%), Gaps = 4/85 (4%)
Query: 10 PVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVA 69
PV +GH V D + + LR+WD T H + V +
Sbjct: 57 PVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDID 116
Query: 70 TGPSIGLNKVISQGRDGTVKCWDIE 94
S+ +IS RD T+K W I+
Sbjct: 117 KKASM----IISGSRDKTIKVWTIK 137
>pdb|3MMY|A Chain A, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|C Chain C, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|E Chain E, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|G Chain G, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
Length = 368
Score = 30.8 bits (68), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 22/98 (22%), Positives = 40/98 (40%), Gaps = 7/98 (7%)
Query: 17 HRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGL 76
H V DVC+ +F + ++WD ++ + + H A + P+
Sbjct: 85 HTGPVLDVCWSDDGSKVFTASCDKTAKMWDLSSNQAIQIA-QHDAPVKTIHWIKAPNYSC 143
Query: 77 NKVISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFC 114
V++ D T+K WD SSNP + ++ +C
Sbjct: 144 --VMTGSWDKTLKFWDTR----SSNPMMVLQLPERCYC 175
>pdb|4I79|A Chain A, Crystal Structure Of Human Nup43
pdb|4I79|B Chain B, Crystal Structure Of Human Nup43
Length = 399
Score = 30.4 bits (67), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
Query: 10 PVAVLRGHRASVTDVCFHQTKPI-LFAGTTGGELRIWD 46
PV++L+ H A + +V FH + P LF + G L WD
Sbjct: 272 PVSLLKAHEAEMWEVHFHPSNPEHLFTCSEDGSLWHWD 309
Score = 29.6 bits (65), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 10/28 (35%), Positives = 18/28 (64%)
Query: 224 VLAGYEDGSILVWDIRNPGIPLTAMKVH 251
V G +DG + +WD+R +P++ +K H
Sbjct: 252 VATGGQDGMLSIWDVRQGTMPVSLLKAH 279
>pdb|4G56|B Chain B, Crystal Structure Of Full Length Prmt5/mep50 Complexes
From Xenopus Laevis
pdb|4G56|D Chain D, Crystal Structure Of Full Length Prmt5/mep50 Complexes
From Xenopus Laevis
Length = 357
Score = 30.4 bits (67), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 39/77 (50%), Gaps = 3/77 (3%)
Query: 18 RASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHG-IVSVATGPSIGL 76
A VTDV + K IL A +G + +W+ ++ ++ + H IV + S G
Sbjct: 94 EAGVTDVAWVSEKGILVASDSGA-VELWEILEKESLLVNKFAKYEHDDIVKTLSVFSDG- 151
Query: 77 NKVISQGRDGTVKCWDI 93
+ +S G+D +VK WD+
Sbjct: 152 TQAVSGGKDFSVKVWDL 168
Score = 28.1 bits (61), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 35/78 (44%), Gaps = 16/78 (20%)
Query: 164 MAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVN 223
AV+G + V++WDL +++ N+ N C+A P K F
Sbjct: 153 QAVSGGKDFSVKVWDL--SQKAVLKSYNAHSSEVN--------CVAA---CPGKDTIF-- 197
Query: 224 VLAGYEDGSILVWDIRNP 241
L+ EDG IL+WD R P
Sbjct: 198 -LSCGEDGRILLWDTRKP 214
>pdb|1WE5|A Chain A, Crystal Structure Of Alpha-Xylosidase From Escherichia
Coli
pdb|1WE5|B Chain B, Crystal Structure Of Alpha-Xylosidase From Escherichia
Coli
pdb|1WE5|C Chain C, Crystal Structure Of Alpha-Xylosidase From Escherichia
Coli
pdb|1WE5|D Chain D, Crystal Structure Of Alpha-Xylosidase From Escherichia
Coli
pdb|1WE5|E Chain E, Crystal Structure Of Alpha-Xylosidase From Escherichia
Coli
pdb|1WE5|F Chain F, Crystal Structure Of Alpha-Xylosidase From Escherichia
Coli
Length = 772
Score = 30.4 bits (67), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 21/80 (26%), Positives = 33/80 (41%), Gaps = 8/80 (10%)
Query: 199 FSSKGRGMCMAVQAYLPSKSQGFVNV-----LAGYEDGSILVWDIRNPGIPLTAMKVHLE 253
+KG +C+ + Y+ KS F + L DGS+ WD PG+ A+
Sbjct: 335 LKAKGLKICVWINPYIGQKSPVFKELQEKGYLLKRPDGSLWQWDKWQPGL---AIYDFTN 391
Query: 254 PVLCLSIDESCNGGISGGAD 273
P C + G ++ G D
Sbjct: 392 PDACKWYADKLKGLVAXGVD 411
>pdb|3FRX|A Chain A, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|B Chain B, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|C Chain C, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|D Chain D, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1
Length = 319
Score = 30.4 bits (67), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 22/85 (25%), Positives = 31/85 (36%), Gaps = 4/85 (4%)
Query: 10 PVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVA 69
PV +GH V D + + LR+WD T H + V +
Sbjct: 57 PVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVXSVDID 116
Query: 70 TGPSIGLNKVISQGRDGTVKCWDIE 94
S +IS RD T+K W I+
Sbjct: 117 KKAS----XIISGSRDKTIKVWTIK 137
>pdb|3I2N|A Chain A, Crystal Structure Of Wd40 Repeats Protein Wdr92
Length = 357
Score = 30.0 bits (66), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 42/91 (46%), Gaps = 8/91 (8%)
Query: 224 VLAGYEDGSILVWDIRNPGIPL-TAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNL- 281
V AGY++G I ++D+RN + T +K + + D S N ++ + K ++++
Sbjct: 183 VCAGYDNGDIKLFDLRNMALRWETNIKNGVCSLEFDRKDISMNKLVATSLEGKFHVFDMR 242
Query: 282 -DHSTYVLFGIGFVCDQEGNKFGTTWHIRHL 311
H T GF E T W +RHL
Sbjct: 243 TQHPTK-----GFASVSEKAHKSTVWQVRHL 268
>pdb|1GOT|B Chain B, Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimera And
The Gt-Beta-Gamma Subunits
pdb|2TRC|B Chain B, PhosducinTRANSDUCIN BETA-Gamma Complex
pdb|1B9X|A Chain A, Structural Analysis Of Phosducin And Its Phosphorylation-
Regulated Interaction With Transducin
pdb|1B9Y|A Chain A, Structural Analysis Of Phosducin And Its Phosphorylation-
Regulated Interaction With Transducin Beta-Gamma
Length = 340
Score = 29.6 bits (65), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 27/57 (47%), Gaps = 5/57 (8%)
Query: 13 VLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTV-----SSSWVHSAAHG 64
LRGH A + + + +L + + G+L IWD+ V SSWV + A+
Sbjct: 50 TLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYA 106
>pdb|3ACP|A Chain A, Crystal Structure Of Yeast Rpn14, A Chaperone Of The 19s
Reg Particle Of The Proteasome
Length = 417
Score = 29.6 bits (65), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 10/22 (45%), Positives = 16/22 (72%)
Query: 224 VLAGYEDGSILVWDIRNPGIPL 245
+ AGYE+G + WD+R+P P+
Sbjct: 303 IYAGYENGMLAQWDLRSPECPV 324
Score = 28.5 bits (62), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 11/33 (33%), Positives = 19/33 (57%)
Query: 14 LRGHRASVTDVCFHQTKPILFAGTTGGELRIWD 46
L GHRA+VTD+ + + + G +R+W+
Sbjct: 174 LIGHRATVTDIAIIDRGRNVLSASLDGTIRLWE 206
>pdb|3VL1|A Chain A, Crystal Structure Of Yeast Rpn14
pdb|3VL1|B Chain B, Crystal Structure Of Yeast Rpn14
Length = 420
Score = 29.6 bits (65), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 10/22 (45%), Positives = 16/22 (72%)
Query: 224 VLAGYEDGSILVWDIRNPGIPL 245
+ AGYE+G + WD+R+P P+
Sbjct: 306 IYAGYENGMLAQWDLRSPECPV 327
Score = 28.5 bits (62), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 11/33 (33%), Positives = 19/33 (57%)
Query: 14 LRGHRASVTDVCFHQTKPILFAGTTGGELRIWD 46
L GHRA+VTD+ + + + G +R+W+
Sbjct: 177 LIGHRATVTDIAIIDRGRNVLSASLDGTIRLWE 209
>pdb|1A0R|B Chain B, Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-Gamma
Length = 340
Score = 29.6 bits (65), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 27/57 (47%), Gaps = 5/57 (8%)
Query: 13 VLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTV-----SSSWVHSAAHG 64
LRGH A + + + +L + + G+L IWD+ V SSWV + A+
Sbjct: 50 TLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYA 106
>pdb|2F2H|A Chain A, Structure Of The Yici Thiosugar Michaelis Complex
pdb|2F2H|B Chain B, Structure Of The Yici Thiosugar Michaelis Complex
pdb|2F2H|C Chain C, Structure Of The Yici Thiosugar Michaelis Complex
pdb|2F2H|D Chain D, Structure Of The Yici Thiosugar Michaelis Complex
pdb|2F2H|E Chain E, Structure Of The Yici Thiosugar Michaelis Complex
pdb|2F2H|F Chain F, Structure Of The Yici Thiosugar Michaelis Complex
Length = 773
Score = 29.6 bits (65), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 21/80 (26%), Positives = 33/80 (41%), Gaps = 8/80 (10%)
Query: 199 FSSKGRGMCMAVQAYLPSKSQGFVNV-----LAGYEDGSILVWDIRNPGIPLTAMKVHLE 253
+KG +C+ + Y+ KS F + L DGS+ WD PG+ A+
Sbjct: 335 LKAKGLKICVWINPYIGQKSPVFKELQEKGYLLKRPDGSLWQWDKWQPGL---AIYDFTN 391
Query: 254 PVLCLSIDESCNGGISGGAD 273
P C + G ++ G D
Sbjct: 392 PDACKWYADKLKGLVAMGVD 411
>pdb|1XSI|A Chain A, Structure Of A Family 31 Alpha Glycosidase
pdb|1XSI|B Chain B, Structure Of A Family 31 Alpha Glycosidase
pdb|1XSI|C Chain C, Structure Of A Family 31 Alpha Glycosidase
pdb|1XSI|D Chain D, Structure Of A Family 31 Alpha Glycosidase
pdb|1XSI|E Chain E, Structure Of A Family 31 Alpha Glycosidase
pdb|1XSI|F Chain F, Structure Of A Family 31 Alpha Glycosidase
pdb|1XSJ|A Chain A, Structure Of A Family 31 Alpha Glycosidase
pdb|1XSJ|B Chain B, Structure Of A Family 31 Alpha Glycosidase
pdb|1XSJ|C Chain C, Structure Of A Family 31 Alpha Glycosidase
pdb|1XSJ|D Chain D, Structure Of A Family 31 Alpha Glycosidase
pdb|1XSJ|E Chain E, Structure Of A Family 31 Alpha Glycosidase
pdb|1XSJ|F Chain F, Structure Of A Family 31 Alpha Glycosidase
pdb|1XSK|A Chain A, Structure Of A Family 31 Alpha Glycosidase Glycosyl-Enzyme
Intermediate
pdb|1XSK|B Chain B, Structure Of A Family 31 Alpha Glycosidase Glycosyl-Enzyme
Intermediate
pdb|1XSK|C Chain C, Structure Of A Family 31 Alpha Glycosidase Glycosyl-Enzyme
Intermediate
pdb|1XSK|D Chain D, Structure Of A Family 31 Alpha Glycosidase Glycosyl-Enzyme
Intermediate
pdb|1XSK|E Chain E, Structure Of A Family 31 Alpha Glycosidase Glycosyl-Enzyme
Intermediate
pdb|1XSK|F Chain F, Structure Of A Family 31 Alpha Glycosidase Glycosyl-Enzyme
Intermediate
Length = 778
Score = 29.6 bits (65), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 21/80 (26%), Positives = 33/80 (41%), Gaps = 8/80 (10%)
Query: 199 FSSKGRGMCMAVQAYLPSKSQGFVNV-----LAGYEDGSILVWDIRNPGIPLTAMKVHLE 253
+KG +C+ + Y+ KS F + L DGS+ WD PG+ A+
Sbjct: 335 LKAKGLKICVWINPYIGQKSPVFKELQEKGYLLKRPDGSLWQWDKWQPGL---AIYDFTN 391
Query: 254 PVLCLSIDESCNGGISGGAD 273
P C + G ++ G D
Sbjct: 392 PDACKWYADKLKGLVAMGVD 411
>pdb|3IZ6|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into
A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s
Ribosome
Length = 380
Score = 29.3 bits (64), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 21 VTDVCFHQTKPILFAGTTGGELRIWDTV 48
VT V F + +LFAG + G+ +WDT+
Sbjct: 301 VTSVAFSISGRLLFAGYSNGDCYVWDTL 328
>pdb|3GRE|A Chain A, Crystal Structure Of Saccharomyces Cerevisiae Vps15 Wd
Repeat Domain
Length = 437
Score = 29.3 bits (64), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 28/64 (43%), Gaps = 1/64 (1%)
Query: 20 SVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKV 79
+V+ +C + +L GTT G + IWD ++ + SW I V G N V
Sbjct: 216 AVSSICIDEECCVLILGTTRGIIDIWD-IRFNVLIRSWSFGDHAPITHVEVCQFYGKNSV 274
Query: 80 ISQG 83
I G
Sbjct: 275 IVVG 278
>pdb|3SN6|B Chain B, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs
Protein Complex
Length = 351
Score = 29.3 bits (64), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 27/56 (48%), Gaps = 5/56 (8%)
Query: 14 LRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTV-----SSSWVHSAAHG 64
LRGH A + + + +L + + G+L IWD+ V SSWV + A+
Sbjct: 62 LRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYA 117
>pdb|1GG2|B Chain B, G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Beta_1
Gamma_2 With Gdp Bound
pdb|1GP2|B Chain B, G Protein Heterotrimer Gi_alpha_1 Beta_1 Gamma_2 With Gdp
Bound
pdb|1TBG|A Chain A, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|B Chain B, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|C Chain C, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|D Chain D, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1OMW|B Chain B, Crystal Structure Of The Complex Between G Protein-Coupled
Receptor Kinase 2 And Heterotrimeric G Protein Beta 1
And Gamma 2 Subunits
pdb|1XHM|A Chain A, The Crystal Structure Of A Biologically Active Peptide
(Sigk) Bound To A G Protein Beta:gamma Heterodimer
pdb|3CIK|B Chain B, Human Grk2 In Complex With Gbetagamma Subunits
pdb|3KRW|B Chain B, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Soak)
pdb|3KRX|B Chain B, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Co-Crystal)
pdb|3AH8|B Chain B, Structure Of Heterotrimeric G Protein Galpha-Q Beta Gamma
In Complex With An Inhibitor Ym-254890
pdb|3PSC|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits
pdb|3PVU|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd101)
pdb|3PVW|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd103a)
pdb|3UZS|B Chain B, Structure Of The C13.28 Rna Aptamer Bound To The G
Protein-Coupled Receptor Kinase 2-Heterotrimeric G
Protein Beta 1 And Gamma 2 Subunit Complex
pdb|3V5W|B Chain B, Human G Protein-Coupled Receptor Kinase 2 In Complex With
Soluble Gbetagamma Subunits And Paroxetine
Length = 340
Score = 29.3 bits (64), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 27/56 (48%), Gaps = 5/56 (8%)
Query: 14 LRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTV-----SSSWVHSAAHG 64
LRGH A + + + +L + + G+L IWD+ V SSWV + A+
Sbjct: 51 LRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYA 106
>pdb|2BCJ|B Chain B, Crystal Structure Of G Protein-coupled Receptor Kinase 2
In Complex With Galpha-q And Gbetagamma Subunits
Length = 340
Score = 28.9 bits (63), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 27/56 (48%), Gaps = 5/56 (8%)
Query: 14 LRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTV-----SSSWVHSAAHG 64
LRGH A + + + +L + + G+L IWD+ V SSWV + A+
Sbjct: 51 LRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYA 106
>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length Murine
Apaf-1
Length = 1256
Score = 28.5 bits (62), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 31/114 (27%), Positives = 47/114 (41%), Gaps = 15/114 (13%)
Query: 10 PVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHS-----AAHG 64
P+ L+GH V F +L G GE+RIW+ + + S S A HG
Sbjct: 1126 PLHELKGHNGCVRCSAFSLDGILLATGDDNGEIRIWNVSDGQLLHSCAPISVEEGTATHG 1185
Query: 65 --IVSVATGPSIGLNKVISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKL 116
+ V P ++S G G +K W++ G + S T TN + K+
Sbjct: 1186 GWVTDVCFSPDS--KTLVSAG--GYLKWWNVATG----DSSQTFYTNGTNLKKI 1231
>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1
Length = 1249
Score = 28.5 bits (62), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 31/114 (27%), Positives = 47/114 (41%), Gaps = 15/114 (13%)
Query: 10 PVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHS-----AAHG 64
P+ L+GH V F +L G GE+RIW+ + + S S A HG
Sbjct: 1119 PLHELKGHNGCVRCSAFSLDGILLATGDDNGEIRIWNVSDGQLLHSCAPISVEEGTATHG 1178
Query: 65 --IVSVATGPSIGLNKVISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKL 116
+ V P ++S G G +K W++ G + S T TN + K+
Sbjct: 1179 GWVTDVCFSPDS--KTLVSAG--GYLKWWNVATG----DSSQTFYTNGTNLKKI 1224
>pdb|1GXR|A Chain A, Wd40 Region Of Human Groucho/tle1
pdb|1GXR|B Chain B, Wd40 Region Of Human Groucho/tle1
pdb|2CE8|A Chain A, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|B Chain B, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|C Chain C, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|D Chain D, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|A Chain A, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|B Chain B, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|C Chain C, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|D Chain D, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain
Length = 337
Score = 28.5 bits (62), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 21/109 (19%), Positives = 39/109 (35%), Gaps = 4/109 (3%)
Query: 6 PPPDPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGI 65
P P A L + + + F+ + G + +WD V H+
Sbjct: 129 PTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASC 188
Query: 66 VSVATGPSIGLNKVISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFC 114
+ ++ + K+ + G D TV+ WD+ G T + S +C
Sbjct: 189 IDISNDGT----KLWTGGLDNTVRSWDLREGRQLQQHDFTSQIFSLGYC 233
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.134 0.419
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,478,769
Number of Sequences: 62578
Number of extensions: 444265
Number of successful extensions: 1157
Number of sequences better than 100.0: 73
Number of HSP's better than 100.0 without gapping: 26
Number of HSP's successfully gapped in prelim test: 47
Number of HSP's that attempted gapping in prelim test: 867
Number of HSP's gapped (non-prelim): 263
length of query: 314
length of database: 14,973,337
effective HSP length: 99
effective length of query: 215
effective length of database: 8,778,115
effective search space: 1887294725
effective search space used: 1887294725
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 51 (24.3 bits)