Query 021291
Match_columns 314
No_of_seqs 511 out of 1238
Neff 11.6
Searched_HMMs 46136
Date Fri Mar 29 09:05:50 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021291.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/021291hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0271 Notchless-like WD40 re 100.0 1.1E-41 2.3E-46 260.7 23.5 280 8-304 105-468 (480)
2 KOG0272 U4/U6 small nuclear ri 100.0 2.1E-40 4.6E-45 256.4 18.0 246 8-280 207-458 (459)
3 KOG0271 Notchless-like WD40 re 100.0 8E-39 1.7E-43 245.0 20.1 248 6-280 188-479 (480)
4 KOG0272 U4/U6 small nuclear ri 100.0 1.6E-38 3.5E-43 246.0 21.9 265 15-305 172-448 (459)
5 KOG0279 G protein beta subunit 100.0 4.5E-37 9.8E-42 226.2 23.5 214 7-288 52-268 (315)
6 KOG0263 Transcription initiati 100.0 2E-37 4.2E-42 257.2 22.2 213 9-287 442-654 (707)
7 KOG0286 G-protein beta subunit 100.0 6.5E-35 1.4E-39 216.2 29.6 273 9-307 46-336 (343)
8 KOG0279 G protein beta subunit 100.0 2.6E-35 5.6E-40 216.9 24.9 228 9-299 6-245 (315)
9 KOG0315 G-protein beta subunit 100.0 5.6E-35 1.2E-39 212.0 24.7 262 6-289 28-295 (311)
10 KOG0273 Beta-transducin family 100.0 6.1E-35 1.3E-39 229.2 22.8 243 18-288 235-488 (524)
11 KOG0265 U5 snRNP-specific prot 100.0 1.1E-33 2.5E-38 210.3 22.2 260 9-293 38-307 (338)
12 KOG0282 mRNA splicing factor [ 100.0 3.9E-35 8.4E-40 231.0 13.3 235 7-310 203-486 (503)
13 KOG0285 Pleiotropic regulator 100.0 1.1E-33 2.3E-38 215.4 20.0 217 6-289 139-355 (460)
14 KOG0316 Conserved WD40 repeat- 100.0 4.7E-33 1E-37 200.5 22.0 270 6-304 5-287 (307)
15 KOG0295 WD40 repeat-containing 100.0 7.4E-34 1.6E-38 216.4 18.7 257 9-290 99-372 (406)
16 KOG0286 G-protein beta subunit 100.0 1.9E-32 4E-37 203.2 24.9 242 11-280 90-343 (343)
17 KOG0318 WD40 repeat stress pro 100.0 2.2E-32 4.8E-37 217.7 26.3 268 6-288 178-566 (603)
18 KOG0263 Transcription initiati 100.0 3.1E-33 6.6E-38 232.4 21.1 235 4-304 364-636 (707)
19 KOG0266 WD40 repeat-containing 100.0 1.9E-32 4.2E-37 231.5 24.8 220 10-293 195-420 (456)
20 KOG0296 Angio-associated migra 100.0 8.3E-32 1.8E-36 205.4 25.6 283 8-305 54-386 (399)
21 KOG0281 Beta-TrCP (transducin 100.0 8.9E-35 1.9E-39 220.7 9.1 233 18-287 197-433 (499)
22 KOG0291 WD40-repeat-containing 100.0 1.7E-31 3.6E-36 221.1 24.5 214 11-289 343-557 (893)
23 KOG1407 WD40 repeat protein [F 100.0 9.8E-32 2.1E-36 196.4 19.7 264 11-309 13-283 (313)
24 KOG0295 WD40 repeat-containing 100.0 1.1E-31 2.5E-36 204.5 20.7 222 9-281 184-405 (406)
25 KOG0276 Vesicle coat complex C 100.0 6.5E-32 1.4E-36 219.3 19.6 253 10-286 5-261 (794)
26 KOG0293 WD40 repeat-containing 100.0 8.9E-32 1.9E-36 208.4 18.8 257 5-284 211-515 (519)
27 KOG0284 Polyadenylation factor 100.0 9.7E-33 2.1E-37 213.3 12.6 245 13-284 133-382 (464)
28 KOG0265 U5 snRNP-specific prot 100.0 8.5E-31 1.8E-35 195.1 21.8 245 9-280 81-336 (338)
29 cd00200 WD40 WD40 domain, foun 100.0 1.6E-29 3.5E-34 203.0 30.7 266 11-304 2-278 (289)
30 PTZ00421 coronin; Provisional 100.0 5.3E-30 1.1E-34 216.1 28.7 214 13-289 70-297 (493)
31 KOG0282 mRNA splicing factor [ 100.0 5.1E-32 1.1E-36 213.5 15.0 248 7-280 247-503 (503)
32 KOG0284 Polyadenylation factor 100.0 1.8E-32 4E-37 211.8 11.7 210 17-292 95-304 (464)
33 KOG0643 Translation initiation 100.0 2.5E-30 5.5E-35 189.7 22.2 246 13-284 5-319 (327)
34 PTZ00420 coronin; Provisional 100.0 1.7E-29 3.8E-34 214.0 30.7 216 9-285 65-296 (568)
35 KOG0266 WD40 repeat-containing 100.0 2.3E-30 4.9E-35 218.9 25.0 216 11-292 151-374 (456)
36 KOG0291 WD40-repeat-containing 100.0 9E-30 2E-34 210.9 25.6 232 9-305 298-538 (893)
37 KOG0273 Beta-transducin family 100.0 1.1E-29 2.4E-34 199.8 23.4 220 5-282 263-523 (524)
38 KOG0296 Angio-associated migra 100.0 2.6E-29 5.7E-34 191.8 24.2 248 8-282 96-398 (399)
39 KOG0292 Vesicle coat complex C 100.0 4.6E-30 9.9E-35 216.2 20.6 238 10-304 43-309 (1202)
40 KOG0313 Microtubule binding pr 100.0 9.5E-30 2.1E-34 195.1 20.4 271 6-307 94-398 (423)
41 KOG0316 Conserved WD40 repeat- 100.0 1.9E-29 4.2E-34 181.9 20.3 250 4-280 45-297 (307)
42 KOG0645 WD40 repeat protein [G 100.0 8.3E-29 1.8E-33 182.1 23.7 211 9-282 5-225 (312)
43 KOG0268 Sof1-like rRNA process 100.0 5.6E-31 1.2E-35 200.8 12.7 244 9-285 57-305 (433)
44 KOG0315 G-protein beta subunit 100.0 5.8E-29 1.3E-33 180.9 22.4 226 9-261 74-309 (311)
45 KOG0645 WD40 repeat protein [G 100.0 4.7E-29 1E-33 183.4 21.8 238 16-282 59-311 (312)
46 KOG0277 Peroxisomal targeting 100.0 2.7E-30 5.9E-35 188.2 15.0 216 4-281 90-308 (311)
47 KOG0285 Pleiotropic regulator 100.0 1.2E-29 2.5E-34 193.5 18.2 216 6-289 181-396 (460)
48 KOG0640 mRNA cleavage stimulat 100.0 1.7E-29 3.7E-34 189.3 18.7 220 9-289 103-342 (430)
49 PLN00181 protein SPA1-RELATED; 100.0 7.1E-28 1.5E-32 218.1 31.5 246 14-285 479-741 (793)
50 KOG0278 Serine/threonine kinas 100.0 3.9E-30 8.5E-35 187.1 13.5 250 6-286 47-301 (334)
51 KOG0319 WD40-repeat-containing 100.0 5.1E-29 1.1E-33 205.9 21.8 270 9-303 314-605 (775)
52 KOG0283 WD40 repeat-containing 100.0 5.5E-29 1.2E-33 208.8 21.8 255 11-284 259-578 (712)
53 KOG0313 Microtubule binding pr 100.0 1.9E-28 4.2E-33 188.0 22.3 254 6-282 132-418 (423)
54 KOG0277 Peroxisomal targeting 100.0 1.6E-29 3.5E-34 184.2 15.7 208 17-286 59-269 (311)
55 KOG0318 WD40 repeat stress pro 100.0 3.4E-27 7.3E-32 188.4 28.3 270 9-306 50-382 (603)
56 KOG0294 WD40 repeat-containing 100.0 3E-28 6.6E-33 182.8 20.7 247 9-285 34-284 (362)
57 KOG1446 Histone H3 (Lys4) meth 100.0 1.9E-27 4E-32 178.7 24.9 248 9-284 5-305 (311)
58 cd00200 WD40 WD40 domain, foun 100.0 2.9E-27 6.2E-32 189.9 28.1 244 9-280 42-289 (289)
59 KOG0281 Beta-TrCP (transducin 100.0 4E-30 8.7E-35 195.5 10.6 192 65-290 200-396 (499)
60 KOG0274 Cdc4 and related F-box 100.0 2.2E-28 4.7E-33 206.7 21.0 213 7-292 237-451 (537)
61 KOG0276 Vesicle coat complex C 100.0 2.7E-28 5.9E-33 198.4 20.3 208 8-278 87-295 (794)
62 KOG0319 WD40-repeat-containing 100.0 2.8E-28 6.1E-33 201.6 19.9 251 9-284 356-621 (775)
63 PLN00181 protein SPA1-RELATED; 100.0 3.9E-27 8.4E-32 213.3 29.2 242 11-281 526-792 (793)
64 KOG0288 WD40 repeat protein Ti 100.0 4.2E-28 9.2E-33 188.0 15.9 246 9-280 210-459 (459)
65 KOG0288 WD40 repeat protein Ti 100.0 7.2E-28 1.6E-32 186.8 16.1 272 5-308 162-441 (459)
66 KOG0275 Conserved WD40 repeat- 100.0 2.7E-27 5.8E-32 178.8 17.6 246 16-289 211-474 (508)
67 KOG0310 Conserved WD40 repeat- 100.0 8.7E-27 1.9E-31 184.3 19.6 244 18-289 26-275 (487)
68 KOG0305 Anaphase promoting com 100.0 2.5E-26 5.4E-31 187.8 22.3 242 14-284 213-463 (484)
69 KOG0647 mRNA export protein (c 100.0 5.9E-26 1.3E-30 169.6 21.9 266 14-303 23-309 (347)
70 KOG4283 Transcription-coupled 100.0 1.2E-26 2.6E-31 172.9 18.2 213 14-288 39-282 (397)
71 KOG0264 Nucleosome remodeling 100.0 2.2E-26 4.8E-31 180.5 20.0 249 15-283 121-405 (422)
72 KOG0300 WD40 repeat-containing 100.0 7.4E-27 1.6E-31 175.9 16.6 245 9-285 139-389 (481)
73 KOG0299 U3 snoRNP-associated p 100.0 5.9E-26 1.3E-30 178.5 21.4 218 15-300 199-438 (479)
74 KOG0641 WD40 repeat protein [G 99.9 2.3E-24 5.1E-29 155.2 27.6 255 11-284 26-305 (350)
75 KOG0289 mRNA splicing factor [ 99.9 5.7E-26 1.2E-30 177.4 20.6 222 19-304 220-449 (506)
76 KOG0640 mRNA cleavage stimulat 99.9 1.1E-26 2.3E-31 174.4 15.6 182 9-249 163-344 (430)
77 KOG0289 mRNA splicing factor [ 99.9 6.7E-26 1.5E-30 177.0 20.2 211 6-280 249-460 (506)
78 KOG0772 Uncharacterized conser 99.9 2.4E-26 5.1E-31 183.3 17.9 232 6-287 155-399 (641)
79 KOG0274 Cdc4 and related F-box 99.9 7.4E-26 1.6E-30 191.4 22.0 206 11-289 200-408 (537)
80 KOG0292 Vesicle coat complex C 99.9 1.3E-26 2.9E-31 195.5 17.2 209 13-286 4-240 (1202)
81 KOG0973 Histone transcription 99.9 8.4E-26 1.8E-30 194.6 22.1 257 8-285 59-358 (942)
82 KOG0306 WD40-repeat-containing 99.9 1.4E-25 3.1E-30 186.2 22.3 247 12-286 367-668 (888)
83 KOG1332 Vesicle coat complex C 99.9 3.1E-26 6.7E-31 166.3 16.2 218 13-284 6-243 (299)
84 PTZ00420 coronin; Provisional 99.9 1.4E-24 3.1E-29 184.3 28.5 187 36-284 50-250 (568)
85 KOG0306 WD40-repeat-containing 99.9 2.3E-25 5E-30 185.0 22.5 268 9-305 98-526 (888)
86 KOG0646 WD40 repeat protein [G 99.9 1.7E-25 3.7E-30 176.2 20.0 212 18-289 81-314 (476)
87 PTZ00421 coronin; Provisional 99.9 3.9E-24 8.4E-29 180.7 28.9 206 17-286 19-249 (493)
88 KOG0308 Conserved WD40 repeat- 99.9 5.8E-26 1.3E-30 185.6 16.1 222 10-286 65-289 (735)
89 KOG2096 WD40 repeat protein [G 99.9 4.3E-25 9.4E-30 166.4 19.5 242 11-306 79-350 (420)
90 KOG0308 Conserved WD40 repeat- 99.9 5.6E-26 1.2E-30 185.7 15.5 220 17-290 20-251 (735)
91 KOG0322 G-protein beta subunit 99.9 3.5E-25 7.5E-30 162.6 17.0 264 5-281 1-322 (323)
92 KOG0278 Serine/threonine kinas 99.9 4.9E-25 1.1E-29 160.7 16.8 258 12-304 8-284 (334)
93 KOG0269 WD40 repeat-containing 99.9 3.6E-26 7.8E-31 190.2 12.1 243 21-285 90-343 (839)
94 KOG0310 Conserved WD40 repeat- 99.9 2.2E-24 4.7E-29 170.9 20.5 207 10-283 102-310 (487)
95 KOG1332 Vesicle coat complex C 99.9 2.7E-24 5.9E-29 156.3 18.7 233 8-284 46-288 (299)
96 KOG1408 WD40 repeat protein [F 99.9 8.8E-25 1.9E-29 180.9 18.3 248 16-284 457-715 (1080)
97 KOG1407 WD40 repeat protein [F 99.9 1.3E-23 2.8E-28 154.2 21.4 230 13-274 59-294 (313)
98 TIGR03866 PQQ_ABC_repeats PQQ- 99.9 1.7E-22 3.7E-27 163.9 29.5 262 7-290 20-287 (300)
99 KOG1036 Mitotic spindle checkp 99.9 4.1E-23 8.8E-28 155.0 23.2 260 17-305 12-292 (323)
100 KOG0772 Uncharacterized conser 99.9 2.7E-24 5.9E-29 171.6 17.5 234 18-310 214-469 (641)
101 KOG0650 WD40 repeat nucleolar 99.9 1.2E-23 2.7E-28 170.7 21.3 284 4-311 386-718 (733)
102 KOG0293 WD40 repeat-containing 99.9 8.6E-25 1.9E-29 170.0 14.0 211 9-240 260-514 (519)
103 KOG0302 Ribosome Assembly prot 99.9 8.4E-24 1.8E-28 162.7 19.1 210 13-284 146-380 (440)
104 KOG0268 Sof1-like rRNA process 99.9 1.3E-24 2.8E-29 166.3 14.5 247 9-287 100-350 (433)
105 KOG1273 WD40 repeat protein [G 99.9 2.9E-23 6.3E-28 156.3 20.4 260 6-292 13-290 (405)
106 KOG0973 Histone transcription 99.9 2.8E-23 6E-28 179.2 22.7 234 16-300 11-338 (942)
107 KOG0300 WD40 repeat-containing 99.9 1.2E-23 2.6E-28 158.7 17.5 212 7-285 179-431 (481)
108 KOG0267 Microtubule severing p 99.9 3.5E-25 7.5E-30 183.2 9.8 226 12-303 22-254 (825)
109 KOG0647 mRNA export protein (c 99.9 4.4E-23 9.6E-28 154.3 19.3 235 12-270 66-311 (347)
110 KOG2445 Nuclear pore complex c 99.9 1.5E-22 3.2E-27 152.0 21.7 231 15-283 10-257 (361)
111 KOG0301 Phospholipase A2-activ 99.9 7E-23 1.5E-27 168.9 21.7 245 8-288 4-255 (745)
112 KOG1539 WD repeat protein [Gen 99.9 3.8E-22 8.3E-27 167.8 25.8 276 7-305 191-635 (910)
113 KOG0283 WD40 repeat-containing 99.9 2.3E-23 5.1E-28 175.3 18.6 203 55-288 261-487 (712)
114 KOG0641 WD40 repeat protein [G 99.9 3.4E-21 7.3E-26 139.0 26.9 249 9-282 80-349 (350)
115 KOG0301 Phospholipase A2-activ 99.9 1.3E-22 2.7E-27 167.4 21.4 236 11-285 50-291 (745)
116 KOG0267 Microtubule severing p 99.9 9E-25 2E-29 180.7 8.8 199 10-274 62-260 (825)
117 KOG0275 Conserved WD40 repeat- 99.9 1.3E-23 2.8E-28 159.0 12.8 213 7-280 294-507 (508)
118 KOG1274 WD40 repeat protein [G 99.9 1.1E-21 2.4E-26 166.6 25.6 247 15-283 10-263 (933)
119 KOG0321 WD40 repeat-containing 99.9 1.7E-22 3.8E-27 165.2 19.7 253 11-284 93-393 (720)
120 KOG0299 U3 snoRNP-associated p 99.9 2.7E-22 5.9E-27 158.0 19.3 211 11-289 135-363 (479)
121 KOG1446 Histone H3 (Lys4) meth 99.9 3.3E-21 7.2E-26 145.3 22.9 211 54-292 8-272 (311)
122 KOG0269 WD40 repeat-containing 99.9 8.2E-23 1.8E-27 170.4 15.5 210 19-286 40-254 (839)
123 KOG0307 Vesicle coat complex C 99.9 5.8E-23 1.3E-27 178.2 13.9 231 18-310 64-308 (1049)
124 KOG0270 WD40 repeat-containing 99.9 4.3E-22 9.4E-27 156.3 17.2 211 14-288 239-455 (463)
125 KOG0270 WD40 repeat-containing 99.9 3.9E-22 8.5E-27 156.5 16.7 201 22-285 177-407 (463)
126 KOG4328 WD40 protein [Function 99.9 1.4E-21 2.9E-26 154.1 19.1 257 11-288 179-456 (498)
127 KOG0305 Anaphase promoting com 99.9 6.8E-21 1.5E-25 156.2 24.0 250 24-304 183-448 (484)
128 KOG1036 Mitotic spindle checkp 99.9 4.2E-21 9.2E-26 144.2 20.9 228 16-272 52-294 (323)
129 KOG0264 Nucleosome remodeling 99.9 7.4E-22 1.6E-26 155.3 17.6 214 8-239 167-404 (422)
130 KOG0642 Cell-cycle nuclear pro 99.9 7.3E-22 1.6E-26 159.4 17.1 233 11-292 287-571 (577)
131 KOG0302 Ribosome Assembly prot 99.9 1.5E-21 3.1E-26 150.5 17.7 213 6-280 199-436 (440)
132 KOG0639 Transducin-like enhanc 99.9 2.1E-22 4.6E-27 160.6 13.6 209 18-292 465-673 (705)
133 KOG2048 WD40 repeat protein [G 99.9 1.6E-20 3.5E-25 154.7 24.3 247 17-286 24-279 (691)
134 KOG0643 Translation initiation 99.9 7.1E-21 1.5E-25 140.4 19.9 221 6-239 40-317 (327)
135 KOG0294 WD40 repeat-containing 99.9 3.8E-21 8.3E-26 144.9 18.4 226 9-260 74-305 (362)
136 KOG4378 Nuclear protein COP1 [ 99.9 3.2E-21 7E-26 153.7 17.1 218 21-263 82-304 (673)
137 KOG1007 WD repeat protein TSSC 99.9 4.2E-21 9.2E-26 143.1 16.1 212 12-282 57-289 (370)
138 KOG0303 Actin-binding protein 99.9 2.1E-20 4.6E-25 144.9 19.8 208 13-285 76-297 (472)
139 KOG2106 Uncharacterized conser 99.9 1.6E-19 3.5E-24 144.3 25.0 253 13-304 240-508 (626)
140 KOG1034 Transcriptional repres 99.9 3.5E-21 7.5E-26 145.9 13.8 247 6-282 123-383 (385)
141 KOG2445 Nuclear pore complex c 99.9 1.3E-19 2.8E-24 136.3 21.9 228 10-286 51-322 (361)
142 TIGR03866 PQQ_ABC_repeats PQQ- 99.9 7.8E-19 1.7E-23 142.4 28.1 248 30-304 1-265 (300)
143 KOG0646 WD40 repeat protein [G 99.9 7.3E-21 1.6E-25 150.3 15.1 204 6-264 111-331 (476)
144 KOG0639 Transducin-like enhanc 99.9 3.6E-21 7.7E-26 153.7 13.3 200 13-281 504-703 (705)
145 KOG2055 WD40 repeat protein [G 99.9 6.7E-20 1.5E-24 144.8 19.5 222 18-303 213-451 (514)
146 KOG0307 Vesicle coat complex C 99.9 1.5E-21 3.3E-26 169.5 11.3 219 9-285 107-330 (1049)
147 KOG2919 Guanine nucleotide-bin 99.9 1.5E-19 3.3E-24 136.9 19.0 233 18-308 104-361 (406)
148 KOG1274 WD40 repeat protein [G 99.8 2E-19 4.4E-24 153.1 20.4 204 13-276 91-294 (933)
149 KOG1007 WD repeat protein TSSC 99.8 2.8E-19 6.1E-24 133.5 18.1 214 9-282 113-361 (370)
150 KOG1408 WD40 repeat protein [F 99.8 7E-19 1.5E-23 146.4 21.5 264 12-293 363-682 (1080)
151 KOG1587 Cytoplasmic dynein int 99.8 1.3E-18 2.8E-23 146.8 22.2 258 8-284 233-518 (555)
152 KOG2919 Guanine nucleotide-bin 99.8 8E-19 1.7E-23 133.1 18.7 231 21-304 52-314 (406)
153 KOG0771 Prolactin regulatory e 99.8 1.7E-19 3.7E-24 141.1 15.3 206 22-284 148-356 (398)
154 KOG1273 WD40 repeat protein [G 99.8 3.6E-19 7.9E-24 134.5 16.2 251 10-286 57-326 (405)
155 KOG1539 WD repeat protein [Gen 99.8 5.4E-19 1.2E-23 149.1 18.7 195 18-280 448-646 (910)
156 KOG1063 RNA polymerase II elon 99.8 3.2E-18 6.8E-23 141.8 22.8 260 9-283 45-347 (764)
157 KOG1538 Uncharacterized conser 99.8 5.4E-19 1.2E-23 146.1 17.9 238 20-284 14-295 (1081)
158 KOG0290 Conserved WD40 repeat- 99.8 2.8E-19 6E-24 133.6 14.6 211 16-284 94-320 (364)
159 KOG1009 Chromatin assembly com 99.8 2.6E-18 5.6E-23 133.9 19.8 254 10-286 57-376 (434)
160 KOG1188 WD40 repeat protein [G 99.8 1.1E-18 2.4E-23 133.1 16.2 198 31-288 41-248 (376)
161 KOG2106 Uncharacterized conser 99.8 1.2E-17 2.6E-22 133.8 21.7 209 10-281 96-315 (626)
162 KOG1063 RNA polymerase II elon 99.8 1.3E-18 2.7E-23 144.1 16.3 217 10-282 517-763 (764)
163 KOG1034 Transcriptional repres 99.8 4.9E-19 1.1E-23 134.4 12.7 232 17-303 88-369 (385)
164 KOG0642 Cell-cycle nuclear pro 99.8 1.7E-18 3.7E-23 140.2 15.1 218 9-253 335-574 (577)
165 KOG4378 Nuclear protein COP1 [ 99.8 3.2E-18 6.8E-23 136.9 16.2 241 20-288 36-286 (673)
166 KOG0321 WD40 repeat-containing 99.8 1.5E-17 3.3E-22 136.7 19.9 253 23-286 54-351 (720)
167 KOG2055 WD40 repeat protein [G 99.8 1E-17 2.2E-22 132.7 18.0 230 10-303 249-498 (514)
168 KOG2096 WD40 repeat protein [G 99.8 1.2E-17 2.6E-22 126.5 17.4 200 16-280 185-400 (420)
169 KOG4283 Transcription-coupled 99.8 4.4E-17 9.6E-22 122.3 19.3 246 15-281 98-364 (397)
170 KOG1310 WD40 repeat protein [G 99.8 6.9E-18 1.5E-22 136.6 15.3 233 10-289 42-310 (758)
171 KOG1188 WD40 repeat protein [G 99.8 1.2E-17 2.5E-22 127.6 14.5 220 7-286 59-350 (376)
172 KOG4227 WD40 repeat protein [G 99.8 1.8E-16 4E-21 123.5 20.9 256 8-281 94-386 (609)
173 KOG0303 Actin-binding protein 99.8 7.5E-17 1.6E-21 125.5 18.1 170 55-286 76-253 (472)
174 KOG0649 WD40 repeat protein [G 99.8 2.7E-16 5.8E-21 115.0 19.9 213 4-283 48-275 (325)
175 PRK11028 6-phosphogluconolacto 99.8 2.7E-15 6E-20 123.2 28.1 253 10-283 27-305 (330)
176 KOG2048 WD40 repeat protein [G 99.8 2.4E-16 5.1E-21 130.5 21.1 216 6-283 98-320 (691)
177 KOG0649 WD40 repeat protein [G 99.7 7.3E-16 1.6E-20 112.8 19.1 195 19-279 115-313 (325)
178 KOG0290 Conserved WD40 repeat- 99.7 2.1E-16 4.6E-21 118.4 16.5 203 16-278 148-361 (364)
179 KOG4328 WD40 protein [Function 99.7 2.5E-16 5.4E-21 124.7 17.7 254 9-282 225-495 (498)
180 KOG1517 Guanine nucleotide bin 99.7 6.7E-16 1.5E-20 134.0 21.8 220 18-284 1064-1289(1387)
181 KOG1523 Actin-related protein 99.7 7.1E-16 1.5E-20 117.0 18.7 215 11-285 3-239 (361)
182 KOG1354 Serine/threonine prote 99.7 6.4E-16 1.4E-20 118.5 18.4 262 18-286 25-363 (433)
183 KOG0644 Uncharacterized conser 99.7 1.4E-17 3E-22 140.9 10.2 250 10-288 182-474 (1113)
184 KOG1963 WD40 repeat protein [G 99.7 2.4E-15 5.3E-20 128.1 23.2 269 14-304 12-309 (792)
185 KOG0650 WD40 repeat nucleolar 99.7 1.2E-16 2.5E-21 130.7 14.6 203 11-279 514-732 (733)
186 KOG1240 Protein kinase contain 99.7 1.5E-15 3.2E-20 133.7 22.1 227 8-289 1038-1280(1431)
187 KOG2110 Uncharacterized conser 99.7 5.7E-15 1.2E-19 114.2 22.7 199 20-285 48-251 (391)
188 KOG2110 Uncharacterized conser 99.7 4.1E-15 8.8E-20 115.0 21.3 219 17-305 4-236 (391)
189 PRK01742 tolB translocation pr 99.7 2.1E-15 4.7E-20 127.6 21.6 222 10-309 195-426 (429)
190 COG2319 FOG: WD40 repeat [Gene 99.7 3.2E-14 6.9E-19 120.8 28.8 251 13-289 60-321 (466)
191 KOG4227 WD40 repeat protein [G 99.7 3.5E-16 7.7E-21 122.0 14.0 253 11-284 49-324 (609)
192 KOG1445 Tumor-specific antigen 99.7 2.5E-16 5.5E-21 129.8 12.8 209 18-287 627-849 (1012)
193 KOG1538 Uncharacterized conser 99.7 1.2E-14 2.7E-19 120.8 22.6 205 5-238 40-292 (1081)
194 COG2319 FOG: WD40 repeat [Gene 99.7 4.4E-14 9.5E-19 119.9 26.2 212 8-285 145-362 (466)
195 KOG1009 Chromatin assembly com 99.7 1.1E-15 2.3E-20 119.5 14.3 180 17-288 12-201 (434)
196 KOG1272 WD40-repeat-containing 99.7 1.5E-16 3.3E-21 126.3 9.2 199 21-289 132-330 (545)
197 KOG2394 WD40 protein DMR-N9 [G 99.7 2.8E-15 6E-20 121.3 16.3 224 29-287 184-457 (636)
198 PF02239 Cytochrom_D1: Cytochr 99.7 1.3E-13 2.9E-18 113.3 24.1 276 8-301 26-364 (369)
199 PF08662 eIF2A: Eukaryotic tra 99.7 3.7E-14 8E-19 106.2 18.8 112 154-289 65-185 (194)
200 PRK11028 6-phosphogluconolacto 99.7 1.9E-13 4.2E-18 112.2 24.6 252 33-303 5-289 (330)
201 KOG1334 WD40 repeat protein [G 99.6 4.5E-15 9.8E-20 118.7 13.8 268 10-287 134-471 (559)
202 KOG1524 WD40 repeat-containing 99.6 6.7E-15 1.4E-19 119.2 14.8 182 31-284 76-257 (737)
203 KOG3881 Uncharacterized conser 99.6 7.3E-14 1.6E-18 109.0 18.7 247 17-288 54-326 (412)
204 KOG2111 Uncharacterized conser 99.6 3.6E-13 7.8E-18 102.5 21.7 179 40-285 75-259 (346)
205 KOG1963 WD40 repeat protein [G 99.6 1.8E-13 4E-18 116.9 22.1 255 16-284 203-540 (792)
206 KOG1445 Tumor-specific antigen 99.6 9.7E-15 2.1E-19 120.7 13.8 200 26-284 587-800 (1012)
207 KOG1517 Guanine nucleotide bin 99.6 3.1E-14 6.7E-19 124.0 16.6 208 23-285 1170-1384(1387)
208 KOG2321 WD40 repeat protein [G 99.6 3.6E-13 7.9E-18 110.2 20.8 253 16-289 49-309 (703)
209 PRK03629 tolB translocation pr 99.6 1.2E-12 2.6E-17 110.8 24.7 223 12-309 192-428 (429)
210 PRK05137 tolB translocation pr 99.6 2E-12 4.2E-17 110.1 25.3 226 8-309 191-433 (435)
211 PRK01742 tolB translocation pr 99.6 2.7E-13 5.9E-18 114.9 20.0 196 39-304 183-388 (429)
212 PF08662 eIF2A: Eukaryotic tra 99.6 3.9E-13 8.4E-18 100.7 18.0 157 22-247 9-185 (194)
213 PRK04922 tolB translocation pr 99.6 1.2E-12 2.6E-17 111.2 23.2 207 8-284 193-413 (433)
214 PRK02889 tolB translocation pr 99.6 2.7E-12 5.9E-17 108.7 24.0 226 9-309 186-425 (427)
215 KOG1523 Actin-related protein 99.6 7.2E-13 1.6E-17 101.0 17.9 223 7-282 44-278 (361)
216 KOG1524 WD40 repeat-containing 99.6 7.9E-14 1.7E-18 113.2 12.9 190 8-279 94-283 (737)
217 PF02239 Cytochrom_D1: Cytochr 99.5 1.5E-11 3.2E-16 101.4 25.0 200 33-289 9-209 (369)
218 KOG1587 Cytoplasmic dynein int 99.5 1.8E-12 3.8E-17 110.1 19.7 231 39-285 221-475 (555)
219 KOG1272 WD40-repeat-containing 99.5 4E-14 8.7E-19 112.8 6.6 190 19-280 171-360 (545)
220 KOG0771 Prolactin regulatory e 99.5 1.2E-12 2.6E-17 103.2 14.6 181 66-304 148-341 (398)
221 KOG2111 Uncharacterized conser 99.5 2E-11 4.4E-16 93.1 20.2 218 20-304 7-243 (346)
222 KOG2139 WD40 repeat protein [G 99.5 1.2E-11 2.7E-16 96.0 18.9 201 18-285 140-386 (445)
223 KOG0322 G-protein beta subunit 99.5 8.1E-13 1.8E-17 98.1 11.9 159 17-238 149-322 (323)
224 KOG2139 WD40 repeat protein [G 99.5 1.9E-11 4.1E-16 95.0 19.6 197 18-269 98-297 (445)
225 PRK02889 tolB translocation pr 99.5 2.1E-11 4.6E-16 103.3 21.5 198 40-303 176-386 (427)
226 PRK03629 tolB translocation pr 99.5 6.5E-11 1.4E-15 100.3 23.6 196 40-304 179-390 (429)
227 PF10282 Lactonase: Lactonase, 99.5 1E-09 2.2E-14 90.5 29.7 255 19-288 37-330 (345)
228 PRK05137 tolB translocation pr 99.5 5.7E-11 1.2E-15 101.2 23.0 196 40-304 182-393 (435)
229 KOG2394 WD40 protein DMR-N9 [G 99.4 7E-13 1.5E-17 107.7 10.3 86 11-100 283-368 (636)
230 PRK00178 tolB translocation pr 99.4 1.3E-10 2.7E-15 99.2 24.5 225 10-309 190-428 (430)
231 TIGR02800 propeller_TolB tol-p 99.4 9.6E-11 2.1E-15 99.7 23.8 204 9-282 180-397 (417)
232 PRK04922 tolB translocation pr 99.4 3.3E-11 7.2E-16 102.5 20.5 196 40-303 184-394 (433)
233 KOG1310 WD40 repeat protein [G 99.4 1.4E-12 3.1E-17 106.3 10.7 168 53-281 43-230 (758)
234 KOG1064 RAVE (regulator of V-A 99.4 1.3E-12 2.9E-17 119.6 11.5 200 14-289 2204-2405(2439)
235 KOG4497 Uncharacterized conser 99.4 4E-12 8.6E-17 97.5 11.9 188 23-280 13-238 (447)
236 KOG1240 Protein kinase contain 99.4 8.5E-11 1.9E-15 104.5 20.9 262 13-280 1093-1431(1431)
237 KOG0644 Uncharacterized conser 99.4 3.6E-13 7.9E-18 114.7 6.1 204 8-240 222-469 (1113)
238 PRK04792 tolB translocation pr 99.4 4.9E-10 1.1E-14 95.4 23.7 222 13-308 212-446 (448)
239 KOG3881 Uncharacterized conser 99.4 5E-11 1.1E-15 93.4 15.4 183 19-263 149-342 (412)
240 KOG4190 Uncharacterized conser 99.4 4.7E-12 1E-16 103.8 9.7 220 10-288 727-954 (1034)
241 TIGR02800 propeller_TolB tol-p 99.3 8.1E-10 1.8E-14 94.0 22.4 196 39-302 169-379 (417)
242 KOG4547 WD40 repeat-containing 99.3 6.2E-10 1.3E-14 91.9 20.0 194 28-283 3-221 (541)
243 COG5170 CDC55 Serine/threonine 99.3 1.8E-11 3.8E-16 93.4 10.2 249 18-287 26-314 (460)
244 KOG0974 WD-repeat protein WDR6 99.3 1.2E-10 2.6E-15 101.9 16.3 198 20-284 89-290 (967)
245 TIGR02658 TTQ_MADH_Hv methylam 99.3 3E-08 6.4E-13 80.3 29.0 242 26-290 53-338 (352)
246 PRK01029 tolB translocation pr 99.3 4.3E-09 9.4E-14 89.0 25.3 227 14-308 180-424 (428)
247 KOG1409 Uncharacterized conser 99.3 2.1E-10 4.6E-15 88.6 15.2 250 9-286 15-274 (404)
248 KOG2315 Predicted translation 99.3 5.1E-09 1.1E-13 86.1 23.1 257 18-305 34-372 (566)
249 KOG0280 Uncharacterized conser 99.3 2E-09 4.3E-14 81.7 18.8 190 38-287 44-247 (339)
250 KOG0280 Uncharacterized conser 99.3 3.1E-10 6.8E-15 85.9 14.4 200 21-283 124-334 (339)
251 KOG2321 WD40 repeat protein [G 99.3 1.9E-10 4.2E-15 94.6 14.2 207 23-283 138-344 (703)
252 KOG2315 Predicted translation 99.2 9E-09 2E-13 84.7 22.3 234 22-284 129-392 (566)
253 KOG4497 Uncharacterized conser 99.2 2.3E-09 5E-14 82.6 17.6 102 154-275 324-425 (447)
254 PRK04792 tolB translocation pr 99.2 5E-09 1.1E-13 89.3 21.4 195 41-303 199-408 (448)
255 PF00400 WD40: WD domain, G-be 99.2 2.6E-11 5.6E-16 65.6 5.0 38 9-46 2-39 (39)
256 PRK00178 tolB translocation pr 99.2 1.2E-08 2.5E-13 87.2 23.2 195 41-303 180-389 (430)
257 KOG0974 WD-repeat protein WDR6 99.2 1.3E-09 2.8E-14 95.6 16.7 103 162-283 145-247 (967)
258 COG2706 3-carboxymuconate cycl 99.2 3E-07 6.5E-12 72.2 26.8 258 17-285 38-324 (346)
259 KOG1409 Uncharacterized conser 99.2 5.1E-09 1.1E-13 81.2 16.8 195 18-240 68-271 (404)
260 KOG4714 Nucleoporin [Nuclear s 99.2 1.9E-09 4.1E-14 80.4 13.5 210 13-239 30-254 (319)
261 KOG1334 WD40 repeat protein [G 99.1 3.8E-10 8.2E-15 91.1 10.1 237 54-305 136-454 (559)
262 PF10282 Lactonase: Lactonase, 99.1 1.4E-07 3.1E-12 77.8 25.0 248 33-303 2-307 (345)
263 KOG2314 Translation initiation 99.1 8.4E-09 1.8E-13 84.9 16.9 229 20-273 251-558 (698)
264 PLN02919 haloacid dehalogenase 99.1 1.4E-07 3.1E-12 88.1 26.6 228 21-286 626-892 (1057)
265 KOG4547 WD40 repeat-containing 99.1 6.3E-09 1.4E-13 86.1 15.8 114 162-293 70-183 (541)
266 PRK04043 tolB translocation pr 99.1 4.1E-07 8.8E-12 76.7 25.8 197 20-286 189-404 (419)
267 PRK01029 tolB translocation pr 99.1 1.3E-07 2.9E-12 80.1 22.9 201 40-303 165-386 (428)
268 TIGR02658 TTQ_MADH_Hv methylam 99.1 8.7E-07 1.9E-11 71.9 26.1 218 40-300 27-311 (352)
269 KOG2041 WD40 repeat protein [G 99.1 3.6E-09 7.7E-14 89.8 12.7 213 10-273 63-279 (1189)
270 PF00400 WD40: WD domain, G-be 99.1 5.8E-10 1.3E-14 60.2 5.4 38 243-280 2-39 (39)
271 KOG0309 Conserved WD40 repeat- 99.1 2.9E-09 6.2E-14 90.5 11.9 214 9-284 105-341 (1081)
272 COG5354 Uncharacterized protei 99.0 1.7E-07 3.6E-12 76.7 21.1 246 19-288 72-354 (561)
273 KOG0309 Conserved WD40 repeat- 99.0 1.5E-09 3.2E-14 92.2 9.9 209 18-285 24-235 (1081)
274 PF04762 IKI3: IKI3 family; I 99.0 4.5E-07 9.8E-12 83.3 26.5 239 17-285 74-336 (928)
275 TIGR03300 assembly_YfgL outer 99.0 3.5E-07 7.7E-12 76.8 23.9 228 29-290 104-346 (377)
276 KOG3914 WD repeat protein WDR4 99.0 8.7E-09 1.9E-13 81.5 12.8 79 204-289 151-230 (390)
277 PF13360 PQQ_2: PQQ-like domai 99.0 6E-07 1.3E-11 70.3 23.2 193 29-289 35-237 (238)
278 COG2706 3-carboxymuconate cycl 99.0 8.6E-07 1.9E-11 69.7 23.1 230 39-284 15-276 (346)
279 KOG4532 WD40-like repeat conta 99.0 1.5E-07 3.3E-12 70.8 17.0 197 33-286 131-335 (344)
280 KOG1832 HIV-1 Vpr-binding prot 99.0 1.3E-09 2.7E-14 94.5 6.9 198 9-247 1092-1298(1516)
281 KOG1645 RING-finger-containing 99.0 1.4E-07 3.1E-12 74.9 17.5 85 9-97 184-269 (463)
282 COG4946 Uncharacterized protei 99.0 3.3E-06 7.2E-11 68.9 25.5 128 154-302 365-503 (668)
283 KOG4532 WD40-like repeat conta 98.9 6.6E-07 1.4E-11 67.5 19.5 205 23-290 72-290 (344)
284 COG5354 Uncharacterized protei 98.9 3.7E-07 8.1E-12 74.7 19.2 236 17-284 31-308 (561)
285 PLN02919 haloacid dehalogenase 98.9 4.9E-06 1.1E-10 78.1 28.9 230 22-287 571-838 (1057)
286 KOG3914 WD repeat protein WDR4 98.9 5.1E-08 1.1E-12 77.2 13.2 157 21-249 65-232 (390)
287 KOG2314 Translation initiation 98.9 9.2E-07 2E-11 73.3 19.5 267 22-304 214-554 (698)
288 PF15492 Nbas_N: Neuroblastoma 98.9 9E-06 2E-10 62.2 22.9 72 23-97 2-76 (282)
289 KOG1912 WD40 repeat protein [G 98.8 2.8E-07 6.2E-12 79.2 16.0 212 8-240 45-305 (1062)
290 KOG1275 PAB-dependent poly(A) 98.8 2.3E-07 5E-12 81.1 15.6 184 29-280 146-340 (1118)
291 COG4946 Uncharacterized protei 98.8 1.1E-05 2.3E-10 66.1 23.7 256 16-283 357-655 (668)
292 KOG2695 WD40 repeat protein [G 98.8 1.4E-08 3.1E-13 78.9 6.9 116 154-289 258-383 (425)
293 TIGR03300 assembly_YfgL outer 98.8 1.3E-05 2.7E-10 67.5 25.2 234 29-290 64-305 (377)
294 COG5170 CDC55 Serine/threonine 98.8 1.6E-07 3.5E-12 72.2 12.3 220 19-282 86-367 (460)
295 PF08450 SGL: SMP-30/Gluconola 98.8 3.3E-05 7.2E-10 60.7 26.6 201 23-289 4-219 (246)
296 KOG4190 Uncharacterized conser 98.8 4.2E-08 9.1E-13 81.1 8.5 176 53-288 728-912 (1034)
297 PRK04043 tolB translocation pr 98.7 9.3E-06 2E-10 68.6 22.5 195 39-303 168-383 (419)
298 KOG1064 RAVE (regulator of V-A 98.7 1.2E-07 2.5E-12 88.5 11.3 189 31-288 2181-2372(2439)
299 KOG0882 Cyclophilin-related pe 98.7 1.2E-07 2.7E-12 76.3 10.1 211 17-289 8-238 (558)
300 KOG2695 WD40 repeat protein [G 98.7 4.3E-08 9.4E-13 76.2 7.3 130 17-190 251-386 (425)
301 KOG1354 Serine/threonine prote 98.7 2.3E-07 5E-12 72.3 10.3 179 16-240 162-360 (433)
302 KOG4714 Nucleoporin [Nuclear s 98.7 2.1E-07 4.4E-12 69.8 9.6 73 207-283 182-255 (319)
303 PF04762 IKI3: IKI3 family; I 98.6 8.3E-06 1.8E-10 75.3 20.6 243 18-284 120-458 (928)
304 PF13360 PQQ_2: PQQ-like domai 98.6 0.00012 2.6E-09 57.2 24.0 185 38-289 1-198 (238)
305 KOG2066 Vacuolar assembly/sort 98.6 1.8E-05 3.9E-10 68.8 18.8 164 14-240 54-234 (846)
306 KOG2041 WD40 repeat protein [G 98.5 3.7E-06 8.1E-11 72.1 14.1 200 17-281 13-246 (1189)
307 PF11768 DUF3312: Protein of u 98.5 1.1E-06 2.3E-11 73.7 9.4 76 16-97 257-332 (545)
308 PRK11138 outer membrane biogen 98.5 4.2E-05 9E-10 64.7 19.2 226 30-290 120-361 (394)
309 PF07433 DUF1513: Protein of u 98.5 0.00036 7.9E-09 55.2 22.6 219 22-299 8-269 (305)
310 KOG1275 PAB-dependent poly(A) 98.5 4.9E-06 1.1E-10 73.2 13.2 154 20-239 179-342 (1118)
311 KOG2114 Vacuolar assembly/sort 98.4 7.1E-05 1.5E-09 65.7 19.3 211 25-287 30-248 (933)
312 KOG1920 IkappaB kinase complex 98.4 0.00016 3.4E-09 66.1 22.0 241 19-285 69-325 (1265)
313 PF15492 Nbas_N: Neuroblastoma 98.4 0.00016 3.5E-09 55.6 18.9 74 21-95 46-128 (282)
314 KOG0882 Cyclophilin-related pe 98.4 1.2E-05 2.6E-10 65.2 13.3 226 9-288 44-311 (558)
315 PF07433 DUF1513: Protein of u 98.4 0.00058 1.3E-08 54.0 21.5 56 24-83 56-117 (305)
316 KOG1008 Uncharacterized conser 98.4 2E-07 4.3E-12 78.5 2.2 204 18-282 56-275 (783)
317 KOG2066 Vacuolar assembly/sort 98.3 6.5E-06 1.4E-10 71.4 11.1 152 63-289 40-194 (846)
318 smart00320 WD40 WD40 repeats. 98.3 1.6E-06 3.4E-11 46.0 5.0 39 8-46 2-40 (40)
319 PRK11138 outer membrane biogen 98.3 0.00038 8.2E-09 58.9 21.1 199 29-289 68-281 (394)
320 KOG1912 WD40 repeat protein [G 98.3 2.7E-05 5.8E-10 67.6 13.8 167 65-281 18-185 (1062)
321 PF08450 SGL: SMP-30/Gluconola 98.3 0.00094 2E-08 52.5 27.0 182 21-267 42-240 (246)
322 PF06977 SdiA-regulated: SdiA- 98.3 0.00092 2E-08 52.0 24.1 218 12-279 15-247 (248)
323 KOG1832 HIV-1 Vpr-binding prot 98.3 1.2E-06 2.5E-11 76.8 5.0 218 51-301 1092-1315(1516)
324 PF08596 Lgl_C: Lethal giant l 98.2 0.0011 2.3E-08 55.6 21.2 216 20-289 3-297 (395)
325 PF14783 BBS2_Mid: Ciliary BBS 98.2 0.0004 8.8E-09 45.9 14.6 68 21-96 2-73 (111)
326 PF11768 DUF3312: Protein of u 98.2 1.7E-05 3.7E-10 66.8 9.9 77 203-287 258-334 (545)
327 PRK02888 nitrous-oxide reducta 98.2 0.0003 6.5E-09 61.0 17.1 185 26-283 200-405 (635)
328 smart00320 WD40 WD40 repeats. 98.0 1.6E-05 3.4E-10 41.9 5.1 39 242-280 2-40 (40)
329 PF04053 Coatomer_WDAD: Coatom 98.0 0.0033 7.1E-08 53.5 20.7 185 10-278 24-219 (443)
330 COG0823 TolB Periplasmic compo 98.0 0.00088 1.9E-08 56.6 17.0 114 154-285 243-361 (425)
331 cd00216 PQQ_DH Dehydrogenases 98.0 0.0096 2.1E-07 51.9 23.2 70 31-100 111-189 (488)
332 KOG3617 WD40 and TPR repeat-co 97.9 0.00039 8.5E-09 61.4 13.5 71 21-95 62-132 (1416)
333 COG0823 TolB Periplasmic compo 97.9 0.0022 4.8E-08 54.3 17.3 168 13-189 187-367 (425)
334 KOG4640 Anaphase-promoting com 97.9 7.7E-05 1.7E-09 63.3 8.5 79 17-100 19-98 (665)
335 KOG3617 WD40 and TPR repeat-co 97.9 3.2E-05 6.9E-10 67.9 6.1 114 154-287 21-136 (1416)
336 PRK02888 nitrous-oxide reducta 97.9 0.0019 4.1E-08 56.2 16.5 110 154-272 326-451 (635)
337 PF06433 Me-amine-dh_H: Methyl 97.9 0.0095 2.1E-07 48.0 21.0 184 40-285 17-216 (342)
338 KOG1008 Uncharacterized conser 97.9 4.4E-06 9.5E-11 70.7 0.7 169 13-240 97-276 (783)
339 PF03178 CPSF_A: CPSF A subuni 97.9 0.008 1.7E-07 49.4 19.8 184 40-283 2-203 (321)
340 KOG4640 Anaphase-promoting com 97.8 0.0001 2.2E-09 62.6 8.6 93 206-308 22-115 (665)
341 KOG3621 WD40 repeat-containing 97.8 0.0049 1.1E-07 53.6 18.3 77 17-95 75-155 (726)
342 PF08596 Lgl_C: Lethal giant l 97.8 0.0039 8.4E-08 52.3 17.5 84 10-94 78-173 (395)
343 PF08553 VID27: VID27 cytoplas 97.8 0.00078 1.7E-08 60.6 13.6 99 168-282 548-647 (794)
344 cd00216 PQQ_DH Dehydrogenases 97.8 0.016 3.4E-07 50.6 21.0 213 30-290 61-327 (488)
345 PF00930 DPPIV_N: Dipeptidyl p 97.8 0.018 3.9E-07 48.0 22.9 267 12-306 36-346 (353)
346 KOG1645 RING-finger-containing 97.7 0.00018 3.9E-09 57.9 7.3 89 154-260 199-289 (463)
347 KOG2395 Protein involved in va 97.7 0.0047 1E-07 52.0 15.2 99 168-282 400-500 (644)
348 COG3391 Uncharacterized conser 97.6 0.028 6E-07 47.4 23.2 206 22-289 77-290 (381)
349 KOG3621 WD40 repeat-containing 97.6 0.0024 5.3E-08 55.3 13.3 124 17-181 32-155 (726)
350 PF12894 Apc4_WD40: Anaphase-p 97.6 0.00031 6.6E-09 38.8 5.0 34 18-52 11-44 (47)
351 TIGR03075 PQQ_enz_alc_DH PQQ-d 97.5 0.058 1.3E-06 47.5 24.0 69 31-100 121-195 (527)
352 PF14783 BBS2_Mid: Ciliary BBS 97.5 0.012 2.5E-07 39.1 12.9 96 156-277 10-109 (111)
353 KOG2444 WD40 repeat protein [G 97.4 0.00064 1.4E-08 50.7 6.9 103 167-285 75-180 (238)
354 KOG1920 IkappaB kinase complex 97.4 0.038 8.2E-07 51.4 18.2 161 18-183 109-325 (1265)
355 PF04841 Vps16_N: Vps16, N-ter 97.4 0.073 1.6E-06 45.3 27.1 50 41-96 62-111 (410)
356 PF02897 Peptidase_S9_N: Proly 97.3 0.081 1.8E-06 45.2 25.2 201 21-282 126-357 (414)
357 TIGR03075 PQQ_enz_alc_DH PQQ-d 97.3 0.097 2.1E-06 46.1 20.6 66 30-100 69-144 (527)
358 KOG2114 Vacuolar assembly/sort 97.3 0.016 3.4E-07 51.8 14.8 117 158-285 74-204 (933)
359 KOG4649 PQQ (pyrrolo-quinoline 97.3 0.017 3.7E-07 44.3 13.2 114 154-289 16-130 (354)
360 PF05096 Glu_cyclase_2: Glutam 97.3 0.054 1.2E-06 42.3 21.8 186 20-270 46-249 (264)
361 PHA02713 hypothetical protein; 97.2 0.036 7.8E-07 49.2 16.6 66 220-288 464-539 (557)
362 COG3391 Uncharacterized conser 97.2 0.1 2.2E-06 44.0 20.3 181 20-262 117-308 (381)
363 PF14583 Pectate_lyase22: Olig 97.2 0.092 2E-06 43.4 20.2 259 5-304 17-299 (386)
364 COG3204 Uncharacterized protei 97.2 0.077 1.7E-06 41.7 19.7 186 16-249 83-271 (316)
365 PF04053 Coatomer_WDAD: Coatom 97.1 0.1 2.2E-06 44.6 17.5 57 223-284 119-175 (443)
366 PF12894 Apc4_WD40: Anaphase-p 97.1 0.0017 3.8E-08 35.8 4.7 36 252-288 11-46 (47)
367 PF05694 SBP56: 56kDa selenium 97.1 0.14 3E-06 42.9 18.4 222 4-270 108-391 (461)
368 PF06433 Me-amine-dh_H: Methyl 97.1 0.12 2.6E-06 41.9 21.2 194 22-250 98-330 (342)
369 KOG4649 PQQ (pyrrolo-quinoline 96.9 0.12 2.6E-06 39.9 19.6 110 30-189 23-132 (354)
370 KOG2079 Vacuolar assembly/sort 96.9 0.024 5.2E-07 52.0 12.3 84 29-117 98-181 (1206)
371 COG3386 Gluconolactonase [Carb 96.8 0.2 4.3E-06 40.7 20.6 79 206-289 164-249 (307)
372 PF08553 VID27: VID27 cytoplas 96.7 0.079 1.7E-06 48.3 14.4 60 36-96 500-562 (794)
373 KOG2079 Vacuolar assembly/sort 96.7 0.0044 9.6E-08 56.5 6.5 67 223-289 101-167 (1206)
374 COG3823 Glutamine cyclotransfe 96.7 0.17 3.7E-06 37.8 14.9 68 29-100 55-125 (262)
375 PF00780 CNH: CNH domain; Int 96.7 0.25 5.4E-06 39.6 24.0 236 29-291 6-264 (275)
376 PF05694 SBP56: 56kDa selenium 96.7 0.32 7E-06 40.8 16.6 106 169-286 219-346 (461)
377 PF10168 Nup88: Nuclear pore c 96.6 0.3 6.6E-06 44.5 17.0 78 19-97 85-182 (717)
378 COG3490 Uncharacterized protei 96.5 0.095 2E-06 41.0 11.3 109 154-279 73-186 (366)
379 PF14655 RAB3GAP2_N: Rab3 GTPa 96.3 0.057 1.2E-06 45.5 10.3 91 7-98 296-402 (415)
380 PF06977 SdiA-regulated: SdiA- 96.3 0.4 8.6E-06 37.6 22.6 183 64-305 23-239 (248)
381 KOG3630 Nuclear pore complex, 96.1 0.096 2.1E-06 48.7 11.1 144 155-307 107-252 (1405)
382 PHA03098 kelch-like protein; P 96.0 1.1 2.3E-05 39.9 19.6 66 29-98 294-370 (534)
383 PF03178 CPSF_A: CPSF A subuni 95.8 0.63 1.4E-05 38.3 14.3 91 172-283 62-158 (321)
384 PF10313 DUF2415: Uncharacteri 95.8 0.067 1.5E-06 28.6 5.5 31 19-49 1-34 (43)
385 COG3490 Uncharacterized protei 95.7 0.78 1.7E-05 36.2 16.8 73 22-96 71-150 (366)
386 PRK13616 lipoprotein LpqB; Pro 95.7 1.5 3.2E-05 39.4 19.0 60 19-85 350-417 (591)
387 TIGR03074 PQQ_membr_DH membran 95.7 1.8 3.8E-05 40.2 23.3 72 29-100 193-284 (764)
388 PF00930 DPPIV_N: Dipeptidyl p 95.6 1.1 2.4E-05 37.4 16.5 95 158-270 245-345 (353)
389 PF12234 Rav1p_C: RAVE protein 95.6 1.1 2.3E-05 40.1 15.2 73 21-94 32-104 (631)
390 KOG4441 Proteins containing BT 95.6 1.6 3.5E-05 39.1 19.8 70 27-100 282-363 (571)
391 PRK13616 lipoprotein LpqB; Pro 95.3 1.8 3.9E-05 38.9 15.9 70 204-281 447-524 (591)
392 KOG4499 Ca2+-binding protein R 95.2 1 2.3E-05 34.4 16.8 104 154-272 163-275 (310)
393 PHA02713 hypothetical protein; 95.2 1.2 2.5E-05 39.9 14.3 20 220-240 513-534 (557)
394 PF05096 Glu_cyclase_2: Glutam 95.2 1.2 2.6E-05 35.0 22.1 168 52-288 35-209 (264)
395 KOG1916 Nuclear protein, conta 95.1 0.011 2.3E-07 53.2 1.5 58 223-282 197-265 (1283)
396 COG3386 Gluconolactonase [Carb 95.0 1.6 3.4E-05 35.6 17.4 101 154-272 168-276 (307)
397 PF07569 Hira: TUP1-like enhan 94.8 0.32 6.9E-06 37.4 8.8 69 26-97 18-98 (219)
398 TIGR03118 PEPCTERM_chp_1 conse 94.8 1.6 3.6E-05 34.9 21.2 227 20-289 24-286 (336)
399 PF10313 DUF2415: Uncharacteri 94.6 0.17 3.7E-06 27.1 4.8 32 64-96 2-35 (43)
400 PF14727 PHTB1_N: PTHB1 N-term 94.5 2.7 5.8E-05 35.8 16.9 59 221-281 145-203 (418)
401 KOG3630 Nuclear pore complex, 94.5 1 2.2E-05 42.4 12.1 96 154-270 161-261 (1405)
402 PHA02790 Kelch-like protein; P 94.4 3.3 7.2E-05 36.3 18.2 65 29-97 271-342 (480)
403 PF07569 Hira: TUP1-like enhan 93.9 0.38 8.2E-06 37.0 7.5 64 223-288 24-101 (219)
404 KOG2395 Protein involved in va 93.8 1.9 4.2E-05 37.2 11.5 61 32-95 348-413 (644)
405 KOG2444 WD40 repeat protein [G 93.6 0.23 5E-06 37.6 5.5 65 29-96 113-179 (238)
406 PF02897 Peptidase_S9_N: Proly 93.6 4.3 9.3E-05 34.8 20.8 161 65-285 126-312 (414)
407 PF10168 Nup88: Nuclear pore c 93.5 6.2 0.00014 36.4 16.7 45 203-249 145-189 (717)
408 COG4880 Secreted protein conta 93.4 4.2 9.1E-05 34.2 14.8 175 40-271 406-584 (603)
409 COG5167 VID27 Protein involved 93.0 3.1 6.8E-05 35.8 11.7 58 223-282 575-632 (776)
410 PF15390 DUF4613: Domain of un 93.0 1.7 3.6E-05 38.1 10.3 120 17-180 55-186 (671)
411 PF14655 RAB3GAP2_N: Rab3 GTPa 92.8 2.9 6.3E-05 35.6 11.5 100 63-189 308-407 (415)
412 PF15390 DUF4613: Domain of un 92.8 6.5 0.00014 34.7 14.9 159 19-239 20-186 (671)
413 TIGR02276 beta_rpt_yvtn 40-res 92.5 0.89 1.9E-05 24.0 6.3 33 28-60 1-34 (42)
414 COG5276 Uncharacterized conser 92.4 4.8 0.0001 32.2 19.0 158 65-288 89-247 (370)
415 PF12234 Rav1p_C: RAVE protein 92.3 3.9 8.4E-05 36.8 12.0 100 168-283 47-157 (631)
416 PF11715 Nup160: Nucleoporin N 92.3 2.1 4.5E-05 38.3 10.7 67 223-289 160-255 (547)
417 PF14870 PSII_BNR: Photosynthe 92.2 5.4 0.00012 32.4 17.7 70 18-92 144-213 (302)
418 KOG4499 Ca2+-binding protein R 92.0 4.6 0.0001 31.1 13.3 78 208-289 161-248 (310)
419 TIGR03074 PQQ_membr_DH membran 91.9 11 0.00024 35.2 18.3 71 30-100 260-350 (764)
420 PF14583 Pectate_lyase22: Olig 91.5 7.5 0.00016 32.6 24.7 234 23-282 85-381 (386)
421 PF14781 BBS2_N: Ciliary BBSom 91.4 3.5 7.6E-05 28.7 13.6 72 22-97 2-84 (136)
422 PF14781 BBS2_N: Ciliary BBSom 90.9 4 8.7E-05 28.4 12.5 104 168-290 16-133 (136)
423 COG3204 Uncharacterized protei 90.7 7.4 0.00016 31.2 17.6 190 63-305 86-301 (316)
424 TIGR02276 beta_rpt_yvtn 40-res 90.6 1.5 3.3E-05 23.1 5.4 31 158-189 1-31 (42)
425 KOG1897 Damage-specific DNA bi 90.6 16 0.00034 34.6 20.1 246 20-288 585-862 (1096)
426 PF04841 Vps16_N: Vps16, N-ter 90.5 11 0.00023 32.5 20.0 41 7-48 69-109 (410)
427 PRK10115 protease 2; Provision 90.0 16 0.00035 33.8 26.8 72 20-97 128-210 (686)
428 KOG2247 WD40 repeat-containing 89.9 0.045 9.8E-07 46.0 -1.8 107 154-280 80-186 (615)
429 KOG1900 Nuclear pore complex, 89.8 10 0.00022 36.8 12.5 34 250-283 240-273 (1311)
430 PF12657 TFIIIC_delta: Transcr 89.7 4.2 9E-05 30.0 8.6 33 64-96 87-123 (173)
431 PF11715 Nup160: Nucleoporin N 89.5 0.98 2.1E-05 40.3 6.0 40 19-58 215-258 (547)
432 PF10647 Gmad1: Lipoprotein Lp 89.2 9.6 0.00021 30.2 11.7 109 154-282 29-144 (253)
433 smart00564 PQQ beta-propeller 89.0 1.4 3.1E-05 21.7 4.1 25 32-56 8-32 (33)
434 PF08728 CRT10: CRT10; InterP 88.6 9.2 0.0002 35.0 11.1 74 203-281 162-245 (717)
435 KOG1916 Nuclear protein, conta 88.2 0.71 1.5E-05 42.3 4.1 71 19-94 181-265 (1283)
436 PF01011 PQQ: PQQ enzyme repea 88.0 2.5 5.4E-05 21.9 4.7 28 32-59 2-29 (38)
437 KOG2280 Vacuolar assembly/sort 87.7 22 0.00048 32.5 15.8 51 40-96 64-114 (829)
438 KOG2280 Vacuolar assembly/sort 87.0 24 0.00053 32.3 15.2 53 205-264 217-271 (829)
439 TIGR03118 PEPCTERM_chp_1 conse 87.0 15 0.00032 29.8 19.4 79 168-260 218-305 (336)
440 PHA03098 kelch-like protein; P 86.9 22 0.00048 31.7 15.8 66 29-98 342-418 (534)
441 KOG4460 Nuclear pore complex, 86.4 18 0.00039 31.7 10.9 78 20-97 105-201 (741)
442 TIGR03606 non_repeat_PQQ dehyd 86.2 22 0.00047 30.9 15.4 62 11-72 22-88 (454)
443 PF02333 Phytase: Phytase; In 86.1 20 0.00042 30.3 21.4 104 163-284 172-292 (381)
444 COG4590 ABC-type uncharacteriz 86.1 1.7 3.8E-05 36.7 5.0 164 9-187 211-393 (733)
445 PF07676 PD40: WD40-like Beta 85.9 3.4 7.4E-05 21.4 4.7 32 14-45 4-38 (39)
446 KOG1983 Tomosyn and related SN 85.9 36 0.00077 33.1 14.3 31 19-49 36-66 (993)
447 KOG4441 Proteins containing BT 85.8 27 0.00058 31.6 15.9 67 29-99 332-409 (571)
448 PF07995 GSDH: Glucose / Sorbo 85.7 19 0.00042 29.8 12.3 109 154-273 7-134 (331)
449 PF10395 Utp8: Utp8 family; I 84.0 34 0.00073 31.2 13.8 178 18-249 129-314 (670)
450 PF14761 HPS3_N: Hermansky-Pud 83.8 17 0.00037 27.7 12.0 56 31-91 29-92 (215)
451 PHA02790 Kelch-like protein; P 82.9 33 0.00071 30.3 14.9 66 29-98 318-388 (480)
452 COG5167 VID27 Protein involved 82.1 4.6 0.0001 34.9 5.9 59 31-94 574-632 (776)
453 PF08801 Nucleoporin_N: Nup133 81.9 33 0.00071 29.6 12.6 31 253-283 190-220 (422)
454 TIGR02604 Piru_Ver_Nterm putat 81.2 32 0.0007 29.0 13.3 52 253-304 124-200 (367)
455 KOG2377 Uncharacterized conser 81.1 8.5 0.00018 32.9 7.0 80 11-94 59-140 (657)
456 KOG3611 Semaphorins [Signal tr 80.7 25 0.00055 32.7 10.4 80 8-90 398-489 (737)
457 COG3823 Glutamine cyclotransfe 80.6 23 0.0005 27.0 11.0 28 161-189 101-128 (262)
458 KOG3616 Selective LIM binding 80.3 47 0.001 30.8 11.4 70 18-94 14-83 (1636)
459 PF08728 CRT10: CRT10; InterP 80.1 8.1 0.00018 35.3 7.0 83 10-93 156-245 (717)
460 PF12341 DUF3639: Protein of u 79.1 5.5 0.00012 19.0 3.5 25 64-92 3-27 (27)
461 PF14779 BBS1: Ciliary BBSome 78.9 27 0.00058 27.7 8.7 56 222-279 196-255 (257)
462 KOG1897 Damage-specific DNA bi 78.6 64 0.0014 30.9 22.9 75 18-94 530-613 (1096)
463 PF01436 NHL: NHL repeat; Int 78.4 5.9 0.00013 18.9 3.7 25 21-45 4-28 (28)
464 PF13570 PQQ_3: PQQ-like domai 78.3 7.8 0.00017 20.2 4.8 21 29-49 20-40 (40)
465 PF14761 HPS3_N: Hermansky-Pud 76.6 13 0.00029 28.3 6.3 50 223-273 30-80 (215)
466 KOG2377 Uncharacterized conser 74.6 56 0.0012 28.3 16.2 169 8-182 6-187 (657)
467 PF14727 PHTB1_N: PTHB1 N-term 73.6 59 0.0013 28.0 20.8 59 31-94 146-204 (418)
468 COG4590 ABC-type uncharacteriz 73.1 25 0.00055 30.2 7.6 60 223-285 330-389 (733)
469 KOG1898 Splicing factor 3b, su 72.9 94 0.002 30.1 18.3 108 154-282 939-1048(1205)
470 PF09826 Beta_propel: Beta pro 72.8 71 0.0015 28.6 21.6 75 212-288 275-361 (521)
471 PF13449 Phytase-like: Esteras 72.5 54 0.0012 27.1 15.1 121 154-282 90-249 (326)
472 KOG1896 mRNA cleavage and poly 72.4 42 0.00091 32.8 9.5 127 5-177 1077-1210(1366)
473 PF14779 BBS1: Ciliary BBSome 70.9 51 0.0011 26.2 9.2 73 17-91 175-255 (257)
474 PF05935 Arylsulfotrans: Aryls 70.8 75 0.0016 28.1 15.7 41 206-251 272-312 (477)
475 PF07995 GSDH: Glucose / Sorbo 70.6 61 0.0013 26.9 23.4 57 220-277 271-330 (331)
476 COG4257 Vgb Streptogramin lyas 70.2 55 0.0012 26.3 20.4 241 19-287 62-310 (353)
477 PF00780 CNH: CNH domain; Int 69.6 55 0.0012 26.0 20.1 77 19-96 36-124 (275)
478 KOG2063 Vacuolar assembly/sort 68.9 93 0.002 29.7 10.9 70 26-98 22-100 (877)
479 PRK10115 protease 2; Provision 68.1 1.1E+02 0.0023 28.7 17.4 33 64-98 128-165 (686)
480 PF01731 Arylesterase: Arylest 67.5 29 0.00064 22.1 6.3 31 253-283 54-85 (86)
481 PF09826 Beta_propel: Beta pro 67.5 93 0.002 27.9 21.9 56 40-98 304-359 (521)
482 PF03088 Str_synth: Strictosid 67.0 31 0.00067 22.2 8.8 41 37-82 34-74 (89)
483 PF10647 Gmad1: Lipoprotein Lp 66.6 63 0.0014 25.6 19.6 66 20-92 25-93 (253)
484 PF14269 Arylsulfotran_2: Aryl 66.0 73 0.0016 26.1 15.9 73 20-94 145-220 (299)
485 PF12768 Rax2: Cortical protei 64.4 26 0.00057 28.2 6.0 56 39-98 15-76 (281)
486 COG1770 PtrB Protease II [Amin 64.0 1.2E+02 0.0026 27.8 19.7 58 21-84 131-193 (682)
487 TIGR02604 Piru_Ver_Nterm putat 63.8 90 0.0019 26.4 22.8 70 19-94 14-99 (367)
488 TIGR03606 non_repeat_PQQ dehyd 63.6 1E+02 0.0022 27.0 13.3 109 154-273 35-166 (454)
489 PF08954 DUF1900: Domain of un 60.4 28 0.00062 24.5 4.9 56 17-72 9-66 (136)
490 PF13449 Phytase-like: Esteras 59.6 61 0.0013 26.8 7.6 61 21-84 87-166 (326)
491 KOG2109 WD40 repeat protein [G 57.1 7 0.00015 34.9 1.7 73 11-87 308-391 (788)
492 KOG0783 Uncharacterized conser 57.0 1.8E+02 0.0039 27.7 11.3 41 6-50 218-258 (1267)
493 KOG1900 Nuclear pore complex, 56.5 2.2E+02 0.0048 28.5 11.7 61 5-70 66-127 (1311)
494 PF01731 Arylesterase: Arylest 56.3 41 0.00089 21.5 4.7 26 154-180 59-84 (86)
495 PF02333 Phytase: Phytase; In 55.5 1.3E+02 0.0028 25.6 19.2 74 207-282 158-237 (381)
496 PLN02193 nitrile-specifier pro 55.4 1.5E+02 0.0032 26.2 20.8 25 29-53 175-206 (470)
497 KOG4460 Nuclear pore complex, 55.2 1.5E+02 0.0033 26.3 11.3 37 254-290 167-206 (741)
498 PF12768 Rax2: Cortical protei 52.5 1.3E+02 0.0027 24.5 8.8 78 17-95 35-124 (281)
499 PF14870 PSII_BNR: Photosynthe 51.6 1.4E+02 0.0029 24.6 19.5 153 63-279 145-301 (302)
500 PF07250 Glyoxal_oxid_N: Glyox 51.2 1.2E+02 0.0026 23.9 12.6 31 257-289 174-204 (243)
No 1
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1.1e-41 Score=260.72 Aligned_cols=280 Identities=17% Similarity=0.263 Sum_probs=215.4
Q ss_pred CCceEEecCCCCceeEEEEccCCCEEEEecCCCeEEEEeCCCCeEEEEEeccCCcccEEEEEEcccCCCCeEEEeecCCe
Q 021291 8 PDPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGT 87 (314)
Q Consensus 8 ~~~~~~l~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~ 87 (314)
.++-..+.||.++|.|++|+|+|..|++|+.|.++|+||+.+..+..+.++|. ..|.|++|+| |++.|++|+.||+
T Consensus 105 trCssS~~GH~e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~TeTp~~t~KgH~--~WVlcvawsP--Dgk~iASG~~dg~ 180 (480)
T KOG0271|consen 105 TRCSSSIAGHGEAVLSVQFSPTGSRLVTGSGDTTVRLWDLDTETPLFTCKGHK--NWVLCVAWSP--DGKKIASGSKDGS 180 (480)
T ss_pred ceeccccCCCCCcEEEEEecCCCceEEecCCCceEEeeccCCCCcceeecCCc--cEEEEEEECC--CcchhhccccCCe
Confidence 36677889999999999999999999999999999999999999999999999 5599999999 9999999999999
Q ss_pred EEEEeCCCCCCCCCCeeeeecceeeEEEeeeeecc----ccccccCCCCcceeeccCCceeeecCCCCCC--ceeccCCC
Q 021291 88 VKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEP----YANAKQANEPKDCYEREVGETVDTDSLCDSK--DDVPAEGP 161 (314)
Q Consensus 88 v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~ 161 (314)
|++||..+++++.++ +..+...+....+.+.... ........+...+|++..+.. ...+.+|.. .++.--|+
T Consensus 181 I~lwdpktg~~~g~~-l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~-~~~lsgHT~~VTCvrwGG~ 258 (480)
T KOG0271|consen 181 IRLWDPKTGQQIGRA-LRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTC-VRTLSGHTASVTCVRWGGE 258 (480)
T ss_pred EEEecCCCCCccccc-ccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCceE-EEEeccCccceEEEEEcCC
Confidence 999999999876542 2333333333444333211 222334456677777766544 345667776 44545555
Q ss_pred ceEEEeecCcCeEEEEecCCCceeeeecccc-------------------------------------------------
Q 021291 162 KYMAVAGEQLSEVEIWDLNTAERCTRLHQNS------------------------------------------------- 192 (314)
Q Consensus 162 ~~~~~~g~~d~~i~vwd~~~~~~~~~~~~~~------------------------------------------------- 192 (314)
.++. +|+.|++|++|+...|.+...++...
T Consensus 259 gliy-SgS~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~e 337 (480)
T KOG0271|consen 259 GLIY-SGSQDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGE 337 (480)
T ss_pred ceEE-ecCCCceEEEEEccchhHHHhhcccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCcc
Confidence 5554 89999999999988765444333100
Q ss_pred ----------------------cCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEeecCCcEEEEEccCCCCceEeeec
Q 021291 193 ----------------------CGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKV 250 (314)
Q Consensus 193 ----------------------~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~ 250 (314)
.....+| ...+..+. |+|| ++ ++++++.|+.|++||.++ ++.+.++.+
T Consensus 338 rlVSgsDd~tlflW~p~~~kkpi~rmtgH----q~lVn~V~-fSPd---~r-~IASaSFDkSVkLW~g~t-Gk~lasfRG 407 (480)
T KOG0271|consen 338 RLVSGSDDFTLFLWNPFKSKKPITRMTGH----QALVNHVS-FSPD---GR-YIASASFDKSVKLWDGRT-GKFLASFRG 407 (480)
T ss_pred eeEEecCCceEEEecccccccchhhhhch----hhheeeEE-ECCC---cc-EEEEeecccceeeeeCCC-cchhhhhhh
Confidence 0001122 23567777 9998 66 999999999999999999 999999999
Q ss_pred CCcceEEEEEeCCCCeEEEecCCCcEEEEecCCCeeeEeee-------eeeecCCCceece
Q 021291 251 HLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTYVLFGI-------GFVCDQEGNKFGT 304 (314)
Q Consensus 251 h~~~v~~~~~~~~~~~l~s~s~dg~i~iw~~~~~~~~~~~~-------~~~~~~~~~~~~~ 304 (314)
|-++|..++|+.|.++|++||.|.++++|++++.+..+-.. ++..+|+|.+.+.
T Consensus 408 Hv~~VYqvawsaDsRLlVS~SkDsTLKvw~V~tkKl~~DLpGh~DEVf~vDwspDG~rV~s 468 (480)
T KOG0271|consen 408 HVAAVYQVAWSADSRLLVSGSKDSTLKVWDVRTKKLKQDLPGHADEVFAVDWSPDGQRVAS 468 (480)
T ss_pred ccceeEEEEeccCccEEEEcCCCceEEEEEeeeeeecccCCCCCceEEEEEecCCCceeec
Confidence 99999999999999999999999999999999988777544 3456678776654
No 2
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=2.1e-40 Score=256.38 Aligned_cols=246 Identities=18% Similarity=0.274 Sum_probs=209.1
Q ss_pred CCceEEecCCCCceeEEEEccC--CCEEEEecCCCeEEEEeCCCCeEEEEEeccCCcccEEEEEEcccCCCCeEEEeecC
Q 021291 8 PDPVAVLRGHRASVTDVCFHQT--KPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRD 85 (314)
Q Consensus 8 ~~~~~~l~~h~~~v~~~~~~~~--~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d 85 (314)
...+++|+||++.|.++.|+|. +..||||+.||++++|++.+...+..+.+|. ..|..++|+| +|++|+|++.|
T Consensus 207 ~~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~e~~l~~l~gH~--~RVs~VafHP--sG~~L~TasfD 282 (459)
T KOG0272|consen 207 CNLLQTLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQETPLQDLEGHL--ARVSRVAFHP--SGKFLGTASFD 282 (459)
T ss_pred cceeEEEeccccceeeEEEccCCCccceeeeccCCceeeeccCCCcchhhhhcch--hhheeeeecC--CCceeeecccc
Confidence 3789999999999999999995 6789999999999999999989999999999 5599999999 99999999999
Q ss_pred CeEEEEeCCCCCCCCCCeeeeecceeeEEEeeeeeccccccccCCCCcceeeccCCceeeecCCCCCC----ceeccCCC
Q 021291 86 GTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSK----DDVPAEGP 161 (314)
Q Consensus 86 g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~ 161 (314)
.+-++||++++.... ..+.+......+.|.++++.. ....-.....+|+++.++.+.. +.+|.. ++|+|+|-
T Consensus 283 ~tWRlWD~~tk~ElL--~QEGHs~~v~~iaf~~DGSL~-~tGGlD~~~RvWDlRtgr~im~-L~gH~k~I~~V~fsPNGy 358 (459)
T KOG0272|consen 283 STWRLWDLETKSELL--LQEGHSKGVFSIAFQPDGSLA-ATGGLDSLGRVWDLRTGRCIMF-LAGHIKEILSVAFSPNGY 358 (459)
T ss_pred cchhhcccccchhhH--hhcccccccceeEecCCCcee-eccCccchhheeecccCcEEEE-ecccccceeeEeECCCce
Confidence 999999999987644 345555566666666554322 2233345678899999887654 555777 99999995
Q ss_pred ceEEEeecCcCeEEEEecCCCceeeeecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEeecCCcEEEEEccCC
Q 021291 162 KYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNP 241 (314)
Q Consensus 162 ~~~~~~g~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~ 241 (314)
.++ +|+.|++++|||++....+.+++ +|.+ .+..+. |+|. .|. +|++++.|++++||..++
T Consensus 359 -~lA-Tgs~Dnt~kVWDLR~r~~ly~ip--------AH~n----lVS~Vk-~~p~--~g~-fL~TasyD~t~kiWs~~~- 419 (459)
T KOG0272|consen 359 -HLA-TGSSDNTCKVWDLRMRSELYTIP--------AHSN----LVSQVK-YSPQ--EGY-FLVTASYDNTVKIWSTRT- 419 (459)
T ss_pred -EEe-ecCCCCcEEEeeecccccceecc--------cccc----hhhheE-eccc--CCe-EEEEcccCcceeeecCCC-
Confidence 343 78889999999999999998888 8855 677776 9995 255 999999999999999998
Q ss_pred CCceEeeecCCcceEEEEEeCCCCeEEEecCCCcEEEEe
Q 021291 242 GIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYN 280 (314)
Q Consensus 242 ~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~iw~ 280 (314)
.++++.+.||.+.|.++++++++.+++|++.|.++++|.
T Consensus 420 ~~~~ksLaGHe~kV~s~Dis~d~~~i~t~s~DRT~KLW~ 458 (459)
T KOG0272|consen 420 WSPLKSLAGHEGKVISLDISPDSQAIATSSFDRTIKLWR 458 (459)
T ss_pred cccchhhcCCccceEEEEeccCCceEEEeccCceeeecc
Confidence 999999999999999999999999999999999999995
No 3
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=8e-39 Score=245.04 Aligned_cols=248 Identities=19% Similarity=0.246 Sum_probs=200.9
Q ss_pred CCCCceEEecCCCCceeEEEEcc-----CCCEEEEecCCCeEEEEeCCCCeEEEEEeccCCcccEEEEEEcccCCCCeEE
Q 021291 6 PPPDPVAVLRGHRASVTDVCFHQ-----TKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVI 80 (314)
Q Consensus 6 ~~~~~~~~l~~h~~~v~~~~~~~-----~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~ 80 (314)
.-.+..+.|+||...|++++|.| ..++||+++.||.|+|||+..+.++..+.+|..+ |+|+.|-- + .+++
T Consensus 188 tg~~~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~~~lsgHT~~--VTCvrwGG--~-gliy 262 (480)
T KOG0271|consen 188 TGQQIGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCVRTLSGHTAS--VTCVRWGG--E-GLIY 262 (480)
T ss_pred CCCcccccccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCceEEEEeccCccc--eEEEEEcC--C-ceEE
Confidence 34456778999999999999987 4679999999999999999999999999999955 99999986 4 8999
Q ss_pred EeecCCeEEEEeCCCCCCCCCCeeeeecceeeEEEeeee-----------ecc------------------------ccc
Q 021291 81 SQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLV-----------KEP------------------------YAN 125 (314)
Q Consensus 81 s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~------------------------~~~ 125 (314)
++|.|++|++|+...+.+.+ .+..+.+-.+...++.. +.. ...
T Consensus 263 SgS~DrtIkvw~a~dG~~~r--~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlV 340 (480)
T KOG0271|consen 263 SGSQDRTIKVWRALDGKLCR--ELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLV 340 (480)
T ss_pred ecCCCceEEEEEccchhHHH--hhcccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCcceeE
Confidence 99999999999999988765 33333333333332211 111 011
Q ss_pred cccCCCCcceeeccCCceeeecCCCCCC----ceeccCCCceEEEeecCcCeEEEEecCCCceeeeecccccCCCCCcCC
Q 021291 126 AKQANEPKDCYEREVGETVDTDSLCDSK----DDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSS 201 (314)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~g~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~h~~ 201 (314)
...++.....|+..........+.+|+. +.|+||+.++ ++++.|..|++||-++|+.+.+|. ||
T Consensus 341 SgsDd~tlflW~p~~~kkpi~rmtgHq~lVn~V~fSPd~r~I--ASaSFDkSVkLW~g~tGk~lasfR--------GH-- 408 (480)
T KOG0271|consen 341 SGSDDFTLFLWNPFKSKKPITRMTGHQALVNHVSFSPDGRYI--ASASFDKSVKLWDGRTGKFLASFR--------GH-- 408 (480)
T ss_pred EecCCceEEEecccccccchhhhhchhhheeeEEECCCccEE--EEeecccceeeeeCCCcchhhhhh--------hc--
Confidence 2223333444555555566677888988 8999999744 488899999999999999999999 88
Q ss_pred CCCceeeeEEEecCCCCCCceEEEEeecCCcEEEEEccCCCCceEeeecCCcceEEEEEeCCCCeEEEecCCCcEEEEe
Q 021291 202 KGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYN 280 (314)
Q Consensus 202 ~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~iw~ 280 (314)
-+.++.++ |+.| .+ +|++|+.|.++++||+++ .+....+.+|.+.|.++.|+|||..+++|+.|..+++|.
T Consensus 409 --v~~VYqva-wsaD---sR-LlVS~SkDsTLKvw~V~t-kKl~~DLpGh~DEVf~vDwspDG~rV~sggkdkv~~lw~ 479 (480)
T KOG0271|consen 409 --VAAVYQVA-WSAD---SR-LLVSGSKDSTLKVWDVRT-KKLKQDLPGHADEVFAVDWSPDGQRVASGGKDKVLRLWR 479 (480)
T ss_pred --cceeEEEE-eccC---cc-EEEEcCCCceEEEEEeee-eeecccCCCCCceEEEEEecCCCceeecCCCceEEEeec
Confidence 44788887 9987 44 999999999999999998 888899999999999999999999999999999999995
No 4
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=1.6e-38 Score=246.00 Aligned_cols=265 Identities=16% Similarity=0.222 Sum_probs=210.6
Q ss_pred cCCCCceeEEEEccCCCEEEEecCCCeEEEEeCCCCeEEEEEeccCCcccEEEEEEcccCCCCeEEEeecCCeEEEEeCC
Q 021291 15 RGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIE 94 (314)
Q Consensus 15 ~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd~~ 94 (314)
-|-+.+|..+.|++|++.|+||+.+|.++||+..+...+.++.+|... |.++.|+|..++..++||+.||++++|++.
T Consensus 172 ~gd~rPis~~~fS~ds~~laT~swsG~~kvW~~~~~~~~~~l~gH~~~--v~~~~fhP~~~~~~lat~s~Dgtvklw~~~ 249 (459)
T KOG0272|consen 172 VGDTRPISGCSFSRDSKHLATGSWSGLVKVWSVPQCNLLQTLRGHTSR--VGAAVFHPVDSDLNLATASADGTVKLWKLS 249 (459)
T ss_pred ccCCCcceeeEeecCCCeEEEeecCCceeEeecCCcceeEEEeccccc--eeeEEEccCCCccceeeeccCCceeeeccC
Confidence 356789999999999999999999999999999999999999999954 999999994335689999999999999999
Q ss_pred CCCCCCCCeeeeecceeeEEEeeeeeccccccccCCCCcceeeccCCceeeecCCCCCC----ceeccCCCceEEEeecC
Q 021291 95 NGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSK----DDVPAEGPKYMAVAGEQ 170 (314)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~g~~ 170 (314)
+...+. .++.+........|.+.+..... ......-.+|++.....+ ...++|+. ++|.+||. ++++|+.
T Consensus 250 ~e~~l~--~l~gH~~RVs~VafHPsG~~L~T-asfD~tWRlWD~~tk~El-L~QEGHs~~v~~iaf~~DGS--L~~tGGl 323 (459)
T KOG0272|consen 250 QETPLQ--DLEGHLARVSRVAFHPSGKFLGT-ASFDSTWRLWDLETKSEL-LLQEGHSKGVFSIAFQPDGS--LAATGGL 323 (459)
T ss_pred CCcchh--hhhcchhhheeeeecCCCceeee-cccccchhhcccccchhh-HhhcccccccceeEecCCCc--eeeccCc
Confidence 876544 33334444444445544433222 222233344555444322 23467766 99999996 5568999
Q ss_pred cCeEEEEecCCCceeeeecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEeecCCcEEEEEccCCCCceEeeec
Q 021291 171 LSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKV 250 (314)
Q Consensus 171 d~~i~vwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~ 250 (314)
|..-+|||+++++++..+. +|.. .+.++. |+|+ |. .|++|+.|++++|||++. ...+.++.+
T Consensus 324 D~~~RvWDlRtgr~im~L~--------gH~k----~I~~V~-fsPN---Gy-~lATgs~Dnt~kVWDLR~-r~~ly~ipA 385 (459)
T KOG0272|consen 324 DSLGRVWDLRTGRCIMFLA--------GHIK----EILSVA-FSPN---GY-HLATGSSDNTCKVWDLRM-RSELYTIPA 385 (459)
T ss_pred cchhheeecccCcEEEEec--------cccc----ceeeEe-ECCC---ce-EEeecCCCCcEEEeeecc-cccceeccc
Confidence 9999999999999999999 8844 788888 9998 65 899999999999999998 788999999
Q ss_pred CCcceEEEEEeC-CCCeEEEecCCCcEEEEecCCCeeeEeeee-------eeecCCCceecee
Q 021291 251 HLEPVLCLSIDE-SCNGGISGGADQKIVLYNLDHSTYVLFGIG-------FVCDQEGNKFGTT 305 (314)
Q Consensus 251 h~~~v~~~~~~~-~~~~l~s~s~dg~i~iw~~~~~~~~~~~~~-------~~~~~~~~~~~~~ 305 (314)
|..-|+.|.|+| .|.+|+|+|.|++++||..++...+....| +..++++..+++.
T Consensus 386 H~nlVS~Vk~~p~~g~fL~TasyD~t~kiWs~~~~~~~ksLaGHe~kV~s~Dis~d~~~i~t~ 448 (459)
T KOG0272|consen 386 HSNLVSQVKYSPQEGYFLVTASYDNTVKIWSTRTWSPLKSLAGHEGKVISLDISPDSQAIATS 448 (459)
T ss_pred ccchhhheEecccCCeEEEEcccCcceeeecCCCcccchhhcCCccceEEEEeccCCceEEEe
Confidence 999999999998 889999999999999999999888775433 3455666655553
No 5
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=100.00 E-value=4.5e-37 Score=226.18 Aligned_cols=214 Identities=22% Similarity=0.363 Sum_probs=182.6
Q ss_pred CCCceEEecCCCCceeEEEEccCCCEEEEecCCCeEEEEeCCCCeEEEEEeccCCcccEEEEEEcccCCCCeEEEeecCC
Q 021291 7 PPDPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDG 86 (314)
Q Consensus 7 ~~~~~~~l~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg 86 (314)
-+.+++.|+||+..|..++.++||++.++++.|+++++||+.+++..+.|.+|... |.+++|++ |...+++|+.|.
T Consensus 52 ~G~~~r~~~GHsH~v~dv~~s~dg~~alS~swD~~lrlWDl~~g~~t~~f~GH~~d--Vlsva~s~--dn~qivSGSrDk 127 (315)
T KOG0279|consen 52 YGVPVRRLTGHSHFVSDVVLSSDGNFALSASWDGTLRLWDLATGESTRRFVGHTKD--VLSVAFST--DNRQIVSGSRDK 127 (315)
T ss_pred cCceeeeeeccceEecceEEccCCceEEeccccceEEEEEecCCcEEEEEEecCCc--eEEEEecC--CCceeecCCCcc
Confidence 35789999999999999999999999999999999999999999999999999965 99999999 999999999999
Q ss_pred eEEEEeCCCCCCCCCCeeeeecce---eeEEEeeeeeccccccccCCCCcceeeccCCceeeecCCCCCCceeccCCCce
Q 021291 87 TVKCWDIENGGLSSNPSLTIKTNS---YHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKY 163 (314)
Q Consensus 87 ~v~iwd~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (314)
+|++||+.... .+++.... ...| +.|+|.....
T Consensus 128 Tiklwnt~g~c-----k~t~~~~~~~~WVsc---------------------------------------vrfsP~~~~p 163 (315)
T KOG0279|consen 128 TIKLWNTLGVC-----KYTIHEDSHREWVSC---------------------------------------VRFSPNESNP 163 (315)
T ss_pred eeeeeeecccE-----EEEEecCCCcCcEEE---------------------------------------EEEcCCCCCc
Confidence 99999997653 33333322 1122 5689987566
Q ss_pred EEEeecCcCeEEEEecCCCceeeeecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEeecCCcEEEEEccCCCC
Q 021291 164 MAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGI 243 (314)
Q Consensus 164 ~~~~g~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~ 243 (314)
++++++.|++|++||+++.+....+. || .+.+..+. ++|| |. ++++|+.||.+.+||++. ++
T Consensus 164 ~Ivs~s~DktvKvWnl~~~~l~~~~~--------gh----~~~v~t~~-vSpD---Gs-lcasGgkdg~~~LwdL~~-~k 225 (315)
T KOG0279|consen 164 IIVSASWDKTVKVWNLRNCQLRTTFI--------GH----SGYVNTVT-VSPD---GS-LCASGGKDGEAMLWDLNE-GK 225 (315)
T ss_pred EEEEccCCceEEEEccCCcchhhccc--------cc----cccEEEEE-ECCC---CC-EEecCCCCceEEEEEccC-Cc
Confidence 66689999999999999999888888 77 55788887 9999 44 999999999999999998 77
Q ss_pred ceEeeecCCcceEEEEEeCCCCeEEEecCCCcEEEEecCCCeeeE
Q 021291 244 PLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTYVL 288 (314)
Q Consensus 244 ~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~iw~~~~~~~~~ 288 (314)
.++.+. |...|.+++|+|+...|+.+ .+..|+|||++++..+.
T Consensus 226 ~lysl~-a~~~v~sl~fspnrywL~~a-t~~sIkIwdl~~~~~v~ 268 (315)
T KOG0279|consen 226 NLYSLE-AFDIVNSLCFSPNRYWLCAA-TATSIKIWDLESKAVVE 268 (315)
T ss_pred eeEecc-CCCeEeeEEecCCceeEeec-cCCceEEEeccchhhhh
Confidence 777765 68999999999998777665 45569999999887765
No 6
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=100.00 E-value=2e-37 Score=257.22 Aligned_cols=213 Identities=21% Similarity=0.343 Sum_probs=187.1
Q ss_pred CceEEecCCCCceeEEEEccCCCEEEEecCCCeEEEEeCCCCeEEEEEeccCCcccEEEEEEcccCCCCeEEEeecCCeE
Q 021291 9 DPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTV 88 (314)
Q Consensus 9 ~~~~~l~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~v 88 (314)
...+++.||.++|..+.|+|+.++|++++.|++||+|.+.+..++..+++|..+ |+++.|+| -|-+|+|+|.|++-
T Consensus 442 ~~~~~L~GH~GPVyg~sFsPd~rfLlScSED~svRLWsl~t~s~~V~y~GH~~P--VwdV~F~P--~GyYFatas~D~tA 517 (707)
T KOG0263|consen 442 GTSRTLYGHSGPVYGCSFSPDRRFLLSCSEDSSVRLWSLDTWSCLVIYKGHLAP--VWDVQFAP--RGYYFATASHDQTA 517 (707)
T ss_pred ceeEEeecCCCceeeeeecccccceeeccCCcceeeeecccceeEEEecCCCcc--eeeEEecC--CceEEEecCCCcee
Confidence 456679999999999999999999999999999999999999999999999955 99999999 89999999999999
Q ss_pred EEEeCCCCCCCCCCeeeeecceeeEEEeeeeeccccccccCCCCcceeeccCCceeeecCCCCCCceeccCCCceEEEee
Q 021291 89 KCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAG 168 (314)
Q Consensus 89 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 168 (314)
++|........+ ++..+-....+ +.|+|+..+++ +|
T Consensus 518 rLWs~d~~~PlR--ifaghlsDV~c----------------------------------------v~FHPNs~Y~a--TG 553 (707)
T KOG0263|consen 518 RLWSTDHNKPLR--IFAGHLSDVDC----------------------------------------VSFHPNSNYVA--TG 553 (707)
T ss_pred eeeecccCCchh--hhcccccccce----------------------------------------EEECCcccccc--cC
Confidence 999998754333 22222222111 56889887544 88
Q ss_pred cCcCeEEEEecCCCceeeeecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEeecCCcEEEEEccCCCCceEee
Q 021291 169 EQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAM 248 (314)
Q Consensus 169 ~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~~~~ 248 (314)
+.|.+|++||..+|..++.|. || .+.+.+++ |+|+ |+ +|++|+.||.|++||+.+ +.++..+
T Consensus 554 SsD~tVRlWDv~~G~~VRiF~--------GH----~~~V~al~-~Sp~---Gr-~LaSg~ed~~I~iWDl~~-~~~v~~l 615 (707)
T KOG0263|consen 554 SSDRTVRLWDVSTGNSVRIFT--------GH----KGPVTALA-FSPC---GR-YLASGDEDGLIKIWDLAN-GSLVKQL 615 (707)
T ss_pred CCCceEEEEEcCCCcEEEEec--------CC----CCceEEEE-EcCC---Cc-eEeecccCCcEEEEEcCC-Ccchhhh
Confidence 999999999999999999998 88 66899998 9998 77 999999999999999998 8999999
Q ss_pred ecCCcceEEEEEeCCCCeEEEecCCCcEEEEecCCCeee
Q 021291 249 KVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTYV 287 (314)
Q Consensus 249 ~~h~~~v~~~~~~~~~~~l~s~s~dg~i~iw~~~~~~~~ 287 (314)
.+|.+.|.+|.|+.+|..||+||.|..|++||+......
T Consensus 616 ~~Ht~ti~SlsFS~dg~vLasgg~DnsV~lWD~~~~~~~ 654 (707)
T KOG0263|consen 616 KGHTGTIYSLSFSRDGNVLASGGADNSVRLWDLTKVIEL 654 (707)
T ss_pred hcccCceeEEEEecCCCEEEecCCCCeEEEEEchhhccc
Confidence 999999999999999999999999999999999876554
No 7
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=100.00 E-value=6.5e-35 Score=216.23 Aligned_cols=273 Identities=15% Similarity=0.220 Sum_probs=214.7
Q ss_pred CceEEecCCCCceeEEEEccCCCEEEEecCCCeEEEEeCCCCeEEEEEeccCCcccEEEEEEcccCCCCeEEEeecCCeE
Q 021291 9 DPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTV 88 (314)
Q Consensus 9 ~~~~~l~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~v 88 (314)
+..++|+||.+.|.++.|++|.++|++++.||.+.|||.-+......+.... ..|..++|+| .+++++.|+.|...
T Consensus 46 ~~rr~LkGH~~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~TtnK~haipl~s--~WVMtCA~sP--Sg~~VAcGGLdN~C 121 (343)
T KOG0286|consen 46 RTRRTLKGHLNKIYAMDWSTDSRRIVSASQDGKLIVWDSFTTNKVHAIPLPS--SWVMTCAYSP--SGNFVACGGLDNKC 121 (343)
T ss_pred eeEEEecccccceeeeEecCCcCeEEeeccCCeEEEEEcccccceeEEecCc--eeEEEEEECC--CCCeEEecCcCcee
Confidence 3458999999999999999999999999999999999999988888888777 6699999999 99999999999999
Q ss_pred EEEeCCCCCC----CCCCeeeeecceeeEEEeeeeeccccccccCCCCcceeeccCCceeeecCCCCCC----ceeccCC
Q 021291 89 KCWDIENGGL----SSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSK----DDVPAEG 160 (314)
Q Consensus 89 ~iwd~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~ 160 (314)
.||++.+.+. .....+..+......|.|-. ............-..|+++.++... .+.+|.. ++++|..
T Consensus 122 siy~ls~~d~~g~~~v~r~l~gHtgylScC~f~d--D~~ilT~SGD~TCalWDie~g~~~~-~f~GH~gDV~slsl~p~~ 198 (343)
T KOG0286|consen 122 SIYPLSTRDAEGNVRVSRELAGHTGYLSCCRFLD--DNHILTGSGDMTCALWDIETGQQTQ-VFHGHTGDVMSLSLSPSD 198 (343)
T ss_pred EEEecccccccccceeeeeecCccceeEEEEEcC--CCceEecCCCceEEEEEcccceEEE-EecCCcccEEEEecCCCC
Confidence 9999986521 11112333444444444433 3333334444555678888876544 4568877 7888943
Q ss_pred CceEEEeecCcCeEEEEecCCCceeeeecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEeecCCcEEEEEccC
Q 021291 161 PKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRN 240 (314)
Q Consensus 161 ~~~~~~~g~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~ 240 (314)
.+.++ +|+.|+..++||+|.+.+.++|. +|.. -+.++. |.|+ |. -+++|+.|++.++||+|.
T Consensus 199 ~ntFv-Sg~cD~~aklWD~R~~~c~qtF~--------ghes----DINsv~-ffP~---G~-afatGSDD~tcRlyDlRa 260 (343)
T KOG0286|consen 199 GNTFV-SGGCDKSAKLWDVRSGQCVQTFE--------GHES----DINSVR-FFPS---GD-AFATGSDDATCRLYDLRA 260 (343)
T ss_pred CCeEE-ecccccceeeeeccCcceeEeec--------cccc----ccceEE-EccC---CC-eeeecCCCceeEEEeecC
Confidence 34454 67779999999999999999999 8844 667776 9998 55 899999999999999998
Q ss_pred CCCceEeeec--CCcceEEEEEeCCCCeEEEecCCCcEEEEecCCCeeeEee-------eeeeecCCCceece-eec
Q 021291 241 PGIPLTAMKV--HLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTYVLFG-------IGFVCDQEGNKFGT-TWH 307 (314)
Q Consensus 241 ~~~~~~~~~~--h~~~v~~~~~~~~~~~l~s~s~dg~i~iw~~~~~~~~~~~-------~~~~~~~~~~~~~~-~w~ 307 (314)
.+.+..+.. -..+|++++|+..|++|++|..|..+.+||.-.++.+-.. ..+..+|+|..+++ +|-
T Consensus 261 -D~~~a~ys~~~~~~gitSv~FS~SGRlLfagy~d~~c~vWDtlk~e~vg~L~GHeNRvScl~~s~DG~av~TgSWD 336 (343)
T KOG0286|consen 261 -DQELAVYSHDSIICGITSVAFSKSGRLLFAGYDDFTCNVWDTLKGERVGVLAGHENRVSCLGVSPDGMAVATGSWD 336 (343)
T ss_pred -CcEEeeeccCcccCCceeEEEcccccEEEeeecCCceeEeeccccceEEEeeccCCeeEEEEECCCCcEEEecchh
Confidence 676766662 2348999999999999999999999999999988877653 34557799988776 553
No 8
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=100.00 E-value=2.6e-35 Score=216.93 Aligned_cols=228 Identities=19% Similarity=0.264 Sum_probs=187.7
Q ss_pred CceEEecCCCCceeEEEEccC-CCEEEEecCCCeEEEEeCCC-----CeEEEEEeccCCcccEEEEEEcccCCCCeEEEe
Q 021291 9 DPVAVLRGHRASVTDVCFHQT-KPILFAGTTGGELRIWDTVQ-----HRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQ 82 (314)
Q Consensus 9 ~~~~~l~~h~~~v~~~~~~~~-~~~l~s~~~dg~v~iwd~~~-----~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~ 82 (314)
....+|++|++.|+.++..+. ...+++++.|.++.+|++.. |..++.+.+|++. |..+..++ ++++.+++
T Consensus 6 ~l~~tl~gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~~GHsH~--v~dv~~s~--dg~~alS~ 81 (315)
T KOG0279|consen 6 VLRGTLEGHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSDDIKYGVPVRRLTGHSHF--VSDVVLSS--DGNFALSA 81 (315)
T ss_pred eeeeeecCCCceEEEEEeecCCCceEEEcccceEEEEEEeccCccccCceeeeeeccceE--ecceEEcc--CCceEEec
Confidence 345689999999999999985 67899999999999999754 5678899999966 99999999 99999999
Q ss_pred ecCCeEEEEeCCCCCCCCCCeeeeecceeeEEEeeeeeccccccccCCCCcceeeccCCceeeecCCCCCCceeccCCCc
Q 021291 83 GRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPK 162 (314)
Q Consensus 83 ~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (314)
+.|+++++||+.+++..+ .+..+...... ++|++++..
T Consensus 82 swD~~lrlWDl~~g~~t~--~f~GH~~dVls----------------------------------------va~s~dn~q 119 (315)
T KOG0279|consen 82 SWDGTLRLWDLATGESTR--RFVGHTKDVLS----------------------------------------VAFSTDNRQ 119 (315)
T ss_pred cccceEEEEEecCCcEEE--EEEecCCceEE----------------------------------------EEecCCCce
Confidence 999999999999985433 23333222221 568888876
Q ss_pred eEEEeecCcCeEEEEecCCCceeeeecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEeecCCcEEEEEccCCC
Q 021291 163 YMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPG 242 (314)
Q Consensus 163 ~~~~~g~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~ 242 (314)
++ +|+.|++|++|++.. .+..++.. +. .+..+.++. |+|+.. .. +|++++.|++|++||+++ .
T Consensus 120 iv--SGSrDkTiklwnt~g-~ck~t~~~--------~~--~~~WVscvr-fsP~~~-~p-~Ivs~s~DktvKvWnl~~-~ 182 (315)
T KOG0279|consen 120 IV--SGSRDKTIKLWNTLG-VCKYTIHE--------DS--HREWVSCVR-FSPNES-NP-IIVSASWDKTVKVWNLRN-C 182 (315)
T ss_pred ee--cCCCcceeeeeeecc-cEEEEEec--------CC--CcCcEEEEE-EcCCCC-Cc-EEEEccCCceEEEEccCC-c
Confidence 55 899999999999874 45555542 21 166899998 999843 22 999999999999999998 8
Q ss_pred CceEeeecCCcceEEEEEeCCCCeEEEecCCCcEEEEecCCCeeeEe------eeeeeecCCC
Q 021291 243 IPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTYVLF------GIGFVCDQEG 299 (314)
Q Consensus 243 ~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~iw~~~~~~~~~~------~~~~~~~~~~ 299 (314)
+....+.+|+..++.++++|||.++++|+.||.+.+||++.++.++. +..++++|.-
T Consensus 183 ~l~~~~~gh~~~v~t~~vSpDGslcasGgkdg~~~LwdL~~~k~lysl~a~~~v~sl~fspnr 245 (315)
T KOG0279|consen 183 QLRTTFIGHSGYVNTVTVSPDGSLCASGGKDGEAMLWDLNEGKNLYSLEAFDIVNSLCFSPNR 245 (315)
T ss_pred chhhccccccccEEEEEECCCCCEEecCCCCceEEEEEccCCceeEeccCCCeEeeEEecCCc
Confidence 88889999999999999999999999999999999999999999886 3445566655
No 9
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=100.00 E-value=5.6e-35 Score=211.95 Aligned_cols=262 Identities=13% Similarity=0.107 Sum_probs=200.5
Q ss_pred CCCCceEEecCCCCceeEEEEccCCCEEEEecCCCeEEEEeCCCCe--EEEEEeccCCcccEEEEEEcccCCCCeEEEee
Q 021291 6 PPPDPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHR--TVSSSWVHSAAHGIVSVATGPSIGLNKVISQG 83 (314)
Q Consensus 6 ~~~~~~~~l~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~ 83 (314)
..+.+.++++...+.|+.+...|+++.||+++.- .||+||+.+++ ++.++.+|... |+.+.|.. +|+.+++|+
T Consensus 28 ~tG~C~rTiqh~dsqVNrLeiTpdk~~LAaa~~q-hvRlyD~~S~np~Pv~t~e~h~kN--VtaVgF~~--dgrWMyTgs 102 (311)
T KOG0315|consen 28 LTGICSRTIQHPDSQVNRLEITPDKKDLAAAGNQ-HVRLYDLNSNNPNPVATFEGHTKN--VTAVGFQC--DGRWMYTGS 102 (311)
T ss_pred hcCeEEEEEecCccceeeEEEcCCcchhhhccCC-eeEEEEccCCCCCceeEEeccCCc--eEEEEEee--cCeEEEecC
Confidence 4567888888788899999999999999998876 59999998764 68899999855 99999999 999999999
Q ss_pred cCCeEEEEeCCCCCCCCCCeeeeecceeeEEEeeeeeccccccccCCCCcceeeccCCceeeecCCCCCC----ceeccC
Q 021291 84 RDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSK----DDVPAE 159 (314)
Q Consensus 84 ~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~ 159 (314)
+||+++|||++...+.+ .+... .+.....+.+ ...........+...+|++..........+.... +...|+
T Consensus 103 eDgt~kIWdlR~~~~qR--~~~~~-spVn~vvlhp-nQteLis~dqsg~irvWDl~~~~c~~~liPe~~~~i~sl~v~~d 178 (311)
T KOG0315|consen 103 EDGTVKIWDLRSLSCQR--NYQHN-SPVNTVVLHP-NQTELISGDQSGNIRVWDLGENSCTHELIPEDDTSIQSLTVMPD 178 (311)
T ss_pred CCceEEEEeccCcccch--hccCC-CCcceEEecC-CcceEEeecCCCcEEEEEccCCccccccCCCCCcceeeEEEcCC
Confidence 99999999999976654 33333 2222222222 2234455666778888998776443333333222 888999
Q ss_pred CCceEEEeecCcCeEEEEecCCCceeeeecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEeecCCcEEEEEcc
Q 021291 160 GPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIR 239 (314)
Q Consensus 160 ~~~~~~~~g~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~ 239 (314)
|..+.+ +...|..++|++-.......+.+.. ....| .+.+..+. |+|+ ++ +|++++.|.+++||+.+
T Consensus 179 gsml~a--~nnkG~cyvW~l~~~~~~s~l~P~~--k~~ah----~~~il~C~-lSPd---~k-~lat~ssdktv~iwn~~ 245 (311)
T KOG0315|consen 179 GSMLAA--ANNKGNCYVWRLLNHQTASELEPVH--KFQAH----NGHILRCL-LSPD---VK-YLATCSSDKTVKIWNTD 245 (311)
T ss_pred CcEEEE--ecCCccEEEEEccCCCccccceEhh--heecc----cceEEEEE-ECCC---Cc-EEEeecCCceEEEEecC
Confidence 987664 4446999999987654332222110 00144 56788887 9998 44 99999999999999999
Q ss_pred CCCCceEeeecCCcceEEEEEeCCCCeEEEecCCCcEEEEecCCCeeeEe
Q 021291 240 NPGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTYVLF 289 (314)
Q Consensus 240 ~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~iw~~~~~~~~~~ 289 (314)
+.-+.-..+++|...++..+|+.+|+||+||+.|+.+++|++..++.+.+
T Consensus 246 ~~~kle~~l~gh~rWvWdc~FS~dg~YlvTassd~~~rlW~~~~~k~v~q 295 (311)
T KOG0315|consen 246 DFFKLELVLTGHQRWVWDCAFSADGEYLVTASSDHTARLWDLSAGKEVRQ 295 (311)
T ss_pred CceeeEEEeecCCceEEeeeeccCccEEEecCCCCceeecccccCceeee
Confidence 84356677889999999999999999999999999999999999997765
No 10
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=100.00 E-value=6.1e-35 Score=229.21 Aligned_cols=243 Identities=17% Similarity=0.292 Sum_probs=192.1
Q ss_pred CCceeEEEEccCCCEEEEecCCCeEEEEeCCCCeEEEEEeccCCcccEEEEEEcccCCCCeEEEeecCCeEEEEeCCCCC
Q 021291 18 RASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGG 97 (314)
Q Consensus 18 ~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~ 97 (314)
+..|++++|+.+|.+||+|+.||.++||+. +|..+.++..|.+ +|.++.|+. .|++|++++.|+++.+||..+++
T Consensus 235 nkdVT~L~Wn~~G~~LatG~~~G~~riw~~-~G~l~~tl~~Hkg--PI~slKWnk--~G~yilS~~vD~ttilwd~~~g~ 309 (524)
T KOG0273|consen 235 NKDVTSLDWNNDGTLLATGSEDGEARIWNK-DGNLISTLGQHKG--PIFSLKWNK--KGTYILSGGVDGTTILWDAHTGT 309 (524)
T ss_pred cCCcceEEecCCCCeEEEeecCcEEEEEec-CchhhhhhhccCC--ceEEEEEcC--CCCEEEeccCCccEEEEeccCce
Confidence 467999999999999999999999999995 5788889988885 499999999 99999999999999999999887
Q ss_pred CCCCCeeeeecceeeEEEeeeeeccccccccCC--CCcceeeccCCceeeecCCCCCC----ceeccCCCceEEEeecCc
Q 021291 98 LSSNPSLTIKTNSYHFCKLSLVKEPYANAKQAN--EPKDCYEREVGETVDTDSLCDSK----DDVPAEGPKYMAVAGEQL 171 (314)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~g~~d 171 (314)
..+ .++++..+ .+.+.+.......... +...++.+.... +...+.+|.. +.|.|.|. +| ++++.|
T Consensus 310 ~~q--~f~~~s~~----~lDVdW~~~~~F~ts~td~~i~V~kv~~~~-P~~t~~GH~g~V~alk~n~tg~-LL-aS~SdD 380 (524)
T KOG0273|consen 310 VKQ--QFEFHSAP----ALDVDWQSNDEFATSSTDGCIHVCKVGEDR-PVKTFIGHHGEVNALKWNPTGS-LL-ASCSDD 380 (524)
T ss_pred EEE--eeeeccCC----ccceEEecCceEeecCCCceEEEEEecCCC-cceeeecccCceEEEEECCCCc-eE-EEecCC
Confidence 644 45555443 1223333333322222 334445554443 3444555766 88999886 33 478889
Q ss_pred CeEEEEecCCCceeeeecccccCCCCCcCCCCCceeeeEEEecCCCCC-----CceEEEEeecCCcEEEEEccCCCCceE
Q 021291 172 SEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQ-----GFVNVLAGYEDGSILVWDIRNPGIPLT 246 (314)
Q Consensus 172 ~~i~vwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~-----g~~~l~~g~~dg~i~vwd~~~~~~~~~ 246 (314)
++++||..........+. +|+. .++.+. |+|+++- ....+++++.|++|++||+.. +.++.
T Consensus 381 ~TlkiWs~~~~~~~~~l~--------~Hsk----ei~t~~-wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~-gv~i~ 446 (524)
T KOG0273|consen 381 GTLKIWSMGQSNSVHDLQ--------AHSK----EIYTIK-WSPTGPVTSNPNMNLMLASASFDSTVKLWDVES-GVPIH 446 (524)
T ss_pred CeeEeeecCCCcchhhhh--------hhcc----ceeeEe-ecCCCCccCCCcCCceEEEeecCCeEEEEEccC-CceeE
Confidence 999999998888888787 7744 566676 8886431 223799999999999999998 99999
Q ss_pred eeecCCcceEEEEEeCCCCeEEEecCCCcEEEEecCCCeeeE
Q 021291 247 AMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTYVL 288 (314)
Q Consensus 247 ~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~iw~~~~~~~~~ 288 (314)
.+..|..+|.+|+|+|+|+++++|+.||.|.+|+..+++...
T Consensus 447 ~f~kH~~pVysvafS~~g~ylAsGs~dg~V~iws~~~~~l~~ 488 (524)
T KOG0273|consen 447 TLMKHQEPVYSVAFSPNGRYLASGSLDGCVHIWSTKTGKLVK 488 (524)
T ss_pred eeccCCCceEEEEecCCCcEEEecCCCCeeEeccccchheeE
Confidence 999999999999999999999999999999999999998764
No 11
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=100.00 E-value=1.1e-33 Score=210.34 Aligned_cols=260 Identities=17% Similarity=0.228 Sum_probs=202.8
Q ss_pred CceEEecCCCCceeEEEEccCCCEEEEecCCCeEEEEeCC-CCeEEEEEeccCCcccEEEEEEcccCCCCeEEEeecCCe
Q 021291 9 DPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTV-QHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGT 87 (314)
Q Consensus 9 ~~~~~l~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~-~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~ 87 (314)
.|+-.+.||++.|..+.|+|+|.+||||+.|..|.+|++. .-+....+++|.++ |..+.|.+ |++.+++++.|.+
T Consensus 38 ap~m~l~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdceN~~~lkgHsgA--VM~l~~~~--d~s~i~S~gtDk~ 113 (338)
T KOG0265|consen 38 APIMLLPGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGDCENFWVLKGHSGA--VMELHGMR--DGSHILSCGTDKT 113 (338)
T ss_pred chhhhcCCCcceEEEEEECCCCCeEeecCCcceEEEEeccccccceeeeccccce--eEeeeecc--CCCEEEEecCCce
Confidence 4566778999999999999999999999999999999964 34566778899965 99999999 9999999999999
Q ss_pred EEEEeCCCCCCCCCCeeeeecceeeEEEeeeeeccccccccCCCCcceeeccCCceeeecCCCCCC--ceeccCCCceEE
Q 021291 88 VKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSK--DDVPAEGPKYMA 165 (314)
Q Consensus 88 v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~ 165 (314)
|+.||++++++.. .+..+..-...+.-.-.+..........+...+|+++....+.......+- +.|..++...+
T Consensus 114 v~~wD~~tG~~~r--k~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~~kyqltAv~f~d~s~qv~- 190 (338)
T KOG0265|consen 114 VRGWDAETGKRIR--KHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTFENKYQLTAVGFKDTSDQVI- 190 (338)
T ss_pred EEEEecccceeee--hhccccceeeecCccccCCeEEEecCCCceEEEEeecccchhhccccceeEEEEEeccccccee-
Confidence 9999999998765 223333322322222222334455666778888998876554433222222 77777777665
Q ss_pred EeecCcCeEEEEecCCCceeeeecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEeecCCcEEEEEccCC---C
Q 021291 166 VAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNP---G 242 (314)
Q Consensus 166 ~~g~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~---~ 242 (314)
+|.-|+.|++||++.++....+. ||.+ .++.+. .+|+ |. ++.+-+.|.++++||++.. .
T Consensus 191 -sggIdn~ikvWd~r~~d~~~~ls--------Gh~D----tIt~ls-ls~~---gs-~llsnsMd~tvrvwd~rp~~p~~ 252 (338)
T KOG0265|consen 191 -SGGIDNDIKVWDLRKNDGLYTLS--------GHAD----TITGLS-LSRY---GS-FLLSNSMDNTVRVWDVRPFAPSQ 252 (338)
T ss_pred -eccccCceeeeccccCcceEEee--------cccC----ceeeEE-eccC---CC-ccccccccceEEEEEecccCCCC
Confidence 68889999999999999999998 8855 677776 8888 44 8999999999999999841 2
Q ss_pred CceEeeecCCc----ceEEEEEeCCCCeEEEecCCCcEEEEecCCCeeeEeeeee
Q 021291 243 IPLTAMKVHLE----PVLCLSIDESCNGGISGGADQKIVLYNLDHSTYVLFGIGF 293 (314)
Q Consensus 243 ~~~~~~~~h~~----~v~~~~~~~~~~~l~s~s~dg~i~iw~~~~~~~~~~~~~~ 293 (314)
.++..+.+|.. ....++|+|++.++..|+.|..+++||......+++..|+
T Consensus 253 R~v~if~g~~hnfeknlL~cswsp~~~~i~ags~dr~vyvwd~~~r~~lyklpGh 307 (338)
T KOG0265|consen 253 RCVKIFQGHIHNFEKNLLKCSWSPNGTKITAGSADRFVYVWDTTSRRILYKLPGH 307 (338)
T ss_pred ceEEEeecchhhhhhhcceeeccCCCCccccccccceEEEeecccccEEEEcCCc
Confidence 34777776643 3566789999999999999999999999999999986553
No 12
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=100.00 E-value=3.9e-35 Score=230.96 Aligned_cols=235 Identities=17% Similarity=0.316 Sum_probs=195.9
Q ss_pred CCCceEEecCCCCceeEEEEcc-CCCEEEEecCCCeEEEEeCCC-CeEEEEEeccCCcccEEEEEEcccCCCCeEEEeec
Q 021291 7 PPDPVAVLRGHRASVTDVCFHQ-TKPILFAGTTGGELRIWDTVQ-HRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGR 84 (314)
Q Consensus 7 ~~~~~~~l~~h~~~v~~~~~~~-~~~~l~s~~~dg~v~iwd~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~ 84 (314)
|.+.++++.||+..|+++.|.| .+.+|++++.|+.|+||++.. +++++++.+|. .+|..++|++ +|..|++++.
T Consensus 203 Pkk~~~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lrtf~gH~--k~Vrd~~~s~--~g~~fLS~sf 278 (503)
T KOG0282|consen 203 PKKLSHNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLRTFKGHR--KPVRDASFNN--CGTSFLSASF 278 (503)
T ss_pred cHhheeeccCCccccchhhhccceeeEEEecCCCceEEEEEEecCcceehhhhcch--hhhhhhhccc--cCCeeeeeec
Confidence 6788999999999999999999 899999999999999999976 89999999999 4599999999 9999999999
Q ss_pred CCeEEEEeCCCCCCCCCCeeeeecceeeEEEeeeeeccccccccCCCCcceeeccCCceeeecCCCCCCceeccCCCceE
Q 021291 85 DGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYM 164 (314)
Q Consensus 85 dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (314)
|+.|++||+++|++.. .++......| +.|.|++.+++
T Consensus 279 D~~lKlwDtETG~~~~----~f~~~~~~~c---------------------------------------vkf~pd~~n~f 315 (503)
T KOG0282|consen 279 DRFLKLWDTETGQVLS----RFHLDKVPTC---------------------------------------VKFHPDNQNIF 315 (503)
T ss_pred ceeeeeeccccceEEE----EEecCCCcee---------------------------------------eecCCCCCcEE
Confidence 9999999999998744 5666555555 66889997777
Q ss_pred EEeecCcCeEEEEecCCCceeeeecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEeecCCcEEEEEccCCCC-
Q 021291 165 AVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGI- 243 (314)
Q Consensus 165 ~~~g~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~- 243 (314)
++ |..|+.|+.||+++++.++.+. .| -+.+..+. |-|+ |+ .+++.+.|+.++||+.+.+-.
T Consensus 316 l~-G~sd~ki~~wDiRs~kvvqeYd--------~h----Lg~i~~i~-F~~~---g~-rFissSDdks~riWe~~~~v~i 377 (503)
T KOG0282|consen 316 LV-GGSDKKIRQWDIRSGKVVQEYD--------RH----LGAILDIT-FVDE---GR-RFISSSDDKSVRIWENRIPVPI 377 (503)
T ss_pred EE-ecCCCcEEEEeccchHHHHHHH--------hh----hhheeeeE-EccC---Cc-eEeeeccCccEEEEEcCCCccc
Confidence 74 6669999999999999888887 44 55788887 9998 55 899999999999999875210
Q ss_pred --------------------------------------------ceEeeecCCc--ceEEEEEeCCCCeEEEecCCCcEE
Q 021291 244 --------------------------------------------PLTAMKVHLE--PVLCLSIDESCNGGISGGADQKIV 277 (314)
Q Consensus 244 --------------------------------------------~~~~~~~h~~--~v~~~~~~~~~~~l~s~s~dg~i~ 277 (314)
....+.+|.. .-..+.|+|||.+|++|+.||.+.
T Consensus 378 k~i~~~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~vaGys~~v~fSpDG~~l~SGdsdG~v~ 457 (503)
T KOG0282|consen 378 KNIADPEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHSVAGYSCQVDFSPDGRTLCSGDSDGKVN 457 (503)
T ss_pred hhhcchhhccCcceecCCCCCeehhhccCceEEEEecccccccCHhhhhcceeccCceeeEEEcCCCCeEEeecCCccEE
Confidence 0112345543 456688999999999999999999
Q ss_pred EEecCCCeeeEeeeeeeecCCCceeceeecccc
Q 021291 278 LYNLDHSTYVLFGIGFVCDQEGNKFGTTWHIRH 310 (314)
Q Consensus 278 iw~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~ 310 (314)
+||.++-+.+....+ .++...+..||+..
T Consensus 458 ~wdwkt~kl~~~lka----h~~~ci~v~wHP~e 486 (503)
T KOG0282|consen 458 FWDWKTTKLVSKLKA----HDQPCIGVDWHPVE 486 (503)
T ss_pred Eeechhhhhhhcccc----CCcceEEEEecCCC
Confidence 999999988776655 36777888888743
No 13
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=100.00 E-value=1.1e-33 Score=215.36 Aligned_cols=217 Identities=22% Similarity=0.341 Sum_probs=185.1
Q ss_pred CCCCceEEecCCCCceeEEEEccCCCEEEEecCCCeEEEEeCCCCeEEEEEeccCCcccEEEEEEcccCCCCeEEEeecC
Q 021291 6 PPPDPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRD 85 (314)
Q Consensus 6 ~~~~~~~~l~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d 85 (314)
.|-+..+++.||.+.|.|+++.|-+.+|+||+.|++++|||+.+|+...++.+|... |..+++++ -..++++++.|
T Consensus 139 apwKl~rVi~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~LkltltGhi~~--vr~vavS~--rHpYlFs~ged 214 (460)
T KOG0285|consen 139 APWKLYRVISGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQLKLTLTGHIET--VRGVAVSK--RHPYLFSAGED 214 (460)
T ss_pred CcceehhhhhhccceEEEEeeCCCceeEEecCCCceeEEEEcccCeEEEeecchhhe--eeeeeecc--cCceEEEecCC
Confidence 466888999999999999999999999999999999999999999999999999955 99999999 78999999999
Q ss_pred CeEEEEeCCCCCCCCCCeeeeecceeeEEEeeeeeccccccccCCCCcceeeccCCceeeecCCCCCCceeccCCCceEE
Q 021291 86 GTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMA 165 (314)
Q Consensus 86 g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (314)
+.|+.||++.++.++ ..+.+-..... ++..|.-+.+
T Consensus 215 k~VKCwDLe~nkvIR----~YhGHlS~V~~--------------------------------------L~lhPTldvl-- 250 (460)
T KOG0285|consen 215 KQVKCWDLEYNKVIR----HYHGHLSGVYC--------------------------------------LDLHPTLDVL-- 250 (460)
T ss_pred CeeEEEechhhhhHH----HhccccceeEE--------------------------------------EeccccceeE--
Confidence 999999999988765 22222111111 3455655533
Q ss_pred EeecCcCeEEEEecCCCceeeeecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEeecCCcEEEEEccCCCCce
Q 021291 166 VAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPL 245 (314)
Q Consensus 166 ~~g~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~ 245 (314)
++|+.|.++++||+++...+..+. || ...+.++. +.|.++ .+++|+.|++|++||++. ++-+
T Consensus 251 ~t~grDst~RvWDiRtr~~V~~l~--------GH----~~~V~~V~-~~~~dp----qvit~S~D~tvrlWDl~a-gkt~ 312 (460)
T KOG0285|consen 251 VTGGRDSTIRVWDIRTRASVHVLS--------GH----TNPVASVM-CQPTDP----QVITGSHDSTVRLWDLRA-GKTM 312 (460)
T ss_pred EecCCcceEEEeeecccceEEEec--------CC----CCcceeEE-eecCCC----ceEEecCCceEEEeeecc-Ccee
Confidence 378889999999999999999998 88 44677776 777644 699999999999999998 8889
Q ss_pred EeeecCCcceEEEEEeCCCCeEEEecCCCcEEEEecCCCeeeEe
Q 021291 246 TAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTYVLF 289 (314)
Q Consensus 246 ~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~iw~~~~~~~~~~ 289 (314)
..+..|...|.+++.+|....++++|.|. |+-|++..+..+..
T Consensus 313 ~tlt~hkksvral~lhP~e~~fASas~dn-ik~w~~p~g~f~~n 355 (460)
T KOG0285|consen 313 ITLTHHKKSVRALCLHPKENLFASASPDN-IKQWKLPEGEFLQN 355 (460)
T ss_pred EeeecccceeeEEecCCchhhhhccCCcc-ceeccCCccchhhc
Confidence 99999999999999999999999999885 99999999887664
No 14
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=4.7e-33 Score=200.52 Aligned_cols=270 Identities=15% Similarity=0.203 Sum_probs=207.8
Q ss_pred CCCCceEEecCCCCceeEEEEccCCCEEEEecCCCeEEEEeCCCCeEEEEEeccCCcccEEEEEEcccCCCCeEEEeecC
Q 021291 6 PPPDPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRD 85 (314)
Q Consensus 6 ~~~~~~~~l~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d 85 (314)
.|.+.++.+..|+++|.++.|+-||+|.++++.|.+|++|+...+.+++++.+|.++ |..++.+. |...|++|+.|
T Consensus 5 ~ptkr~~~l~~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg~liktYsghG~E--VlD~~~s~--Dnskf~s~GgD 80 (307)
T KOG0316|consen 5 LPTKRLSILDCAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRGALIKTYSGHGHE--VLDAALSS--DNSKFASCGGD 80 (307)
T ss_pred CcchhceeecccccceEEEEEccCCCEEEEcCCCceEEeecccccceeeeecCCCce--eeeccccc--cccccccCCCC
Confidence 455788999999999999999999999999999999999999999999999999966 99999998 88999999999
Q ss_pred CeEEEEeCCCCCCCCCCeeeeecceeeEEEeeeeeccccccccCCCCcceeeccCCc-eeeecCCCCCC--ceeccCCCc
Q 021291 86 GTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGE-TVDTDSLCDSK--DDVPAEGPK 162 (314)
Q Consensus 86 g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~--~~~~~~~~~ 162 (314)
..+.+||+++++..+ .+..+........|+-.. ..............|+-+... .+...+....+ .++.-.+..
T Consensus 81 k~v~vwDV~TGkv~R--r~rgH~aqVNtV~fNees-SVv~SgsfD~s~r~wDCRS~s~ePiQildea~D~V~Si~v~~he 157 (307)
T KOG0316|consen 81 KAVQVWDVNTGKVDR--RFRGHLAQVNTVRFNEES-SVVASGSFDSSVRLWDCRSRSFEPIQILDEAKDGVSSIDVAEHE 157 (307)
T ss_pred ceEEEEEcccCeeee--ecccccceeeEEEecCcc-eEEEeccccceeEEEEcccCCCCccchhhhhcCceeEEEecccE
Confidence 999999999998866 333333333333332211 122233445667778776654 33333333333 444444443
Q ss_pred eEEEeecCcCeEEEEecCCCceeeeecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEeecCCcEEEEEccCCC
Q 021291 163 YMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPG 242 (314)
Q Consensus 163 ~~~~~g~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~ 242 (314)
++ +|+.||+++.||++.++....+- +| ++.++. |+++ ++ ..++++.|+++++.|-.+ +
T Consensus 158 Iv--aGS~DGtvRtydiR~G~l~sDy~--------g~------pit~vs-~s~d---~n-c~La~~l~stlrLlDk~t-G 215 (307)
T KOG0316|consen 158 IV--AGSVDGTVRTYDIRKGTLSSDYF--------GH------PITSVS-FSKD---GN-CSLASSLDSTLRLLDKET-G 215 (307)
T ss_pred EE--eeccCCcEEEEEeecceeehhhc--------CC------cceeEE-ecCC---CC-EEEEeeccceeeecccch-h
Confidence 33 79999999999999998776655 45 788887 9998 44 899999999999999998 9
Q ss_pred CceEeeecCCcceE--EEEEeCCCCeEEEecCCCcEEEEecCCCeeeEe--------eeeeeecCCCceece
Q 021291 243 IPLTAMKVHLEPVL--CLSIDESCNGGISGGADQKIVLYNLDHSTYVLF--------GIGFVCDQEGNKFGT 304 (314)
Q Consensus 243 ~~~~~~~~h~~~v~--~~~~~~~~~~l~s~s~dg~i~iw~~~~~~~~~~--------~~~~~~~~~~~~~~~ 304 (314)
+.+..+++|...-. ..++......+++||.||.|++||+..+..+.. ...++++|....|.+
T Consensus 216 klL~sYkGhkn~eykldc~l~qsdthV~sgSEDG~Vy~wdLvd~~~~sk~~~~~~v~v~dl~~hp~~~~f~~ 287 (307)
T KOG0316|consen 216 KLLKSYKGHKNMEYKLDCCLNQSDTHVFSGSEDGKVYFWDLVDETQISKLSVVSTVIVTDLSCHPTMDDFIT 287 (307)
T ss_pred HHHHHhcccccceeeeeeeecccceeEEeccCCceEEEEEeccceeeeeeccCCceeEEeeecccCccceeE
Confidence 99999999987544 445566677899999999999999999887764 344567776655544
No 15
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=7.4e-34 Score=216.42 Aligned_cols=257 Identities=17% Similarity=0.242 Sum_probs=200.6
Q ss_pred CceEEecCCCCceeEEEEccCCCEEEEecCCCeEEEEeCCCCeEEEEEeccCCcccEEEEEEcccCCCCeEEEeecCCeE
Q 021291 9 DPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTV 88 (314)
Q Consensus 9 ~~~~~l~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~v 88 (314)
.+.+.+.||..+|+.+-|+|+-..+++++.|++|++||..++++...+++|... |.+++|+. .|+++++++.|-.+
T Consensus 99 ~l~~~l~g~r~~vt~v~~hp~~~~v~~as~d~tikv~D~~tg~~e~~LrGHt~s--v~di~~~a--~Gk~l~tcSsDl~~ 174 (406)
T KOG0295|consen 99 NLVQKLAGHRSSVTRVIFHPSEALVVSASEDATIKVFDTETGELERSLRGHTDS--VFDISFDA--SGKYLATCSSDLSA 174 (406)
T ss_pred CchhhhhccccceeeeeeccCceEEEEecCCceEEEEEccchhhhhhhhccccc--eeEEEEec--CccEEEecCCccch
Confidence 566778899999999999999999999999999999999999999999999955 99999999 99999999999999
Q ss_pred EEEeCCCC-CCCCCCeeeeecceeeEEEeeeeeccccccccCCCCcceeeccCCceeeecCCCCCC----ceeccCCCce
Q 021291 89 KCWDIENG-GLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSK----DDVPAEGPKY 163 (314)
Q Consensus 89 ~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~ 163 (314)
++||..+. ++++ ....+.+......+-+.+.... ..........|++..+..+ ..+.+|.. +..+.|| .
T Consensus 175 ~LWd~~~~~~c~k--s~~gh~h~vS~V~f~P~gd~il-S~srD~tik~We~~tg~cv-~t~~~h~ewvr~v~v~~DG--t 248 (406)
T KOG0295|consen 175 KLWDFDTFFRCIK--SLIGHEHGVSSVFFLPLGDHIL-SCSRDNTIKAWECDTGYCV-KTFPGHSEWVRMVRVNQDG--T 248 (406)
T ss_pred hheeHHHHHHHHH--HhcCcccceeeEEEEecCCeee-ecccccceeEEecccceeE-EeccCchHhEEEEEecCCe--e
Confidence 99999873 3332 2223333333444444432221 2222334466777666543 35677777 4444554 5
Q ss_pred EEEeecCcCeEEEEecCCCceeeeecccccCCCCCcCCCCCceeeeEEEecCCC------------CCCceEEEEeecCC
Q 021291 164 MAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSK------------SQGFVNVLAGYEDG 231 (314)
Q Consensus 164 ~~~~g~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~------------~~g~~~l~~g~~dg 231 (314)
++++++.|.+|++|-+.++++...+. .|.- .+-+++ |.|.. ..++ ++.+++.|+
T Consensus 249 i~As~s~dqtl~vW~~~t~~~k~~lR--------~hEh----~vEci~-wap~~~~~~i~~at~~~~~~~-~l~s~SrDk 314 (406)
T KOG0295|consen 249 IIASCSNDQTLRVWVVATKQCKAELR--------EHEH----PVECIA-WAPESSYPSISEATGSTNGGQ-VLGSGSRDK 314 (406)
T ss_pred EEEecCCCceEEEEEeccchhhhhhh--------cccc----ceEEEE-ecccccCcchhhccCCCCCcc-EEEeecccc
Confidence 66689999999999999998777776 5533 444444 55531 2234 899999999
Q ss_pred cEEEEEccCCCCceEeeecCCcceEEEEEeCCCCeEEEecCCCcEEEEecCCCeeeEee
Q 021291 232 SILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTYVLFG 290 (314)
Q Consensus 232 ~i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~iw~~~~~~~~~~~ 290 (314)
+|++||+.+ +.++.++.+|...|..++|+|.|+||+++.+|+++++||+.+++++...
T Consensus 315 tIk~wdv~t-g~cL~tL~ghdnwVr~~af~p~Gkyi~ScaDDktlrvwdl~~~~cmk~~ 372 (406)
T KOG0295|consen 315 TIKIWDVST-GMCLFTLVGHDNWVRGVAFSPGGKYILSCADDKTLRVWDLKNLQCMKTL 372 (406)
T ss_pred eEEEEeccC-CeEEEEEecccceeeeeEEcCCCeEEEEEecCCcEEEEEeccceeeecc
Confidence 999999999 8999999999999999999999999999999999999999999988753
No 16
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=100.00 E-value=1.9e-32 Score=203.25 Aligned_cols=242 Identities=16% Similarity=0.214 Sum_probs=196.9
Q ss_pred eEEecCCCCceeEEEEccCCCEEEEecCCCeEEEEeCCCC------eEEEEEeccCCcccEEEEEEcccCCCCeEEEeec
Q 021291 11 VAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQH------RTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGR 84 (314)
Q Consensus 11 ~~~l~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~------~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~ 84 (314)
++.+.-....|..++|+|.|+++|.|+.|+...||++.+. +..+.+.+|. ..+.|+.|.+ | ..|+++|.
T Consensus 90 ~haipl~s~WVMtCA~sPSg~~VAcGGLdN~Csiy~ls~~d~~g~~~v~r~l~gHt--gylScC~f~d--D-~~ilT~SG 164 (343)
T KOG0286|consen 90 VHAIPLPSSWVMTCAYSPSGNFVACGGLDNKCSIYPLSTRDAEGNVRVSRELAGHT--GYLSCCRFLD--D-NHILTGSG 164 (343)
T ss_pred eeEEecCceeEEEEEECCCCCeEEecCcCceeEEEecccccccccceeeeeecCcc--ceeEEEEEcC--C-CceEecCC
Confidence 4445555788999999999999999999999999999854 3456788898 4599999988 6 88999999
Q ss_pred CCeEEEEeCCCCCCCCCCeeeeecceeeEEEeeeeec--cccccccCCCCcceeeccCCceeeecCCCCCC----ceecc
Q 021291 85 DGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKE--PYANAKQANEPKDCYEREVGETVDTDSLCDSK----DDVPA 158 (314)
Q Consensus 85 dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~ 158 (314)
|.+..+||+++++... .++.+......+++... .............+|+++... ....+.+|.. +.|.|
T Consensus 165 D~TCalWDie~g~~~~----~f~GH~gDV~slsl~p~~~ntFvSg~cD~~aklWD~R~~~-c~qtF~ghesDINsv~ffP 239 (343)
T KOG0286|consen 165 DMTCALWDIETGQQTQ----VFHGHTGDVMSLSLSPSDGNTFVSGGCDKSAKLWDVRSGQ-CVQTFEGHESDINSVRFFP 239 (343)
T ss_pred CceEEEEEcccceEEE----EecCCcccEEEEecCCCCCCeEEecccccceeeeeccCcc-eeEeecccccccceEEEcc
Confidence 9999999999997644 45555444444444432 223334445667889998884 4456677766 99999
Q ss_pred CCCceEEEeecCcCeEEEEecCCCceeeeecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEeecCCcEEEEEc
Q 021291 159 EGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDI 238 (314)
Q Consensus 159 ~~~~~~~~~g~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~ 238 (314)
+|..+. +|+.|++.++||+|..+.+..+.. ......+++++ |+-. |+ +|++|..|..+.+||.
T Consensus 240 ~G~afa--tGSDD~tcRlyDlRaD~~~a~ys~----------~~~~~gitSv~-FS~S---GR-lLfagy~d~~c~vWDt 302 (343)
T KOG0286|consen 240 SGDAFA--TGSDDATCRLYDLRADQELAVYSH----------DSIICGITSVA-FSKS---GR-LLFAGYDDFTCNVWDT 302 (343)
T ss_pred CCCeee--ecCCCceeEEEeecCCcEEeeecc----------CcccCCceeEE-Eccc---cc-EEEeeecCCceeEeec
Confidence 997543 899999999999999998888873 22456788898 9987 77 9999999999999999
Q ss_pred cCCCCceEeeecCCcceEEEEEeCCCCeEEEecCCCcEEEEe
Q 021291 239 RNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYN 280 (314)
Q Consensus 239 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~iw~ 280 (314)
-. ++.+..+.+|...|+++..+|||..|+|||.|..++||.
T Consensus 303 lk-~e~vg~L~GHeNRvScl~~s~DG~av~TgSWDs~lriW~ 343 (343)
T KOG0286|consen 303 LK-GERVGVLAGHENRVSCLGVSPDGMAVATGSWDSTLRIWA 343 (343)
T ss_pred cc-cceEEEeeccCCeeEEEEECCCCcEEEecchhHheeecC
Confidence 87 888999999999999999999999999999999999994
No 17
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=100.00 E-value=2.2e-32 Score=217.71 Aligned_cols=268 Identities=15% Similarity=0.231 Sum_probs=195.6
Q ss_pred CCCCceEEecCCCCceeEEEEccCCCEEEEecCCCeEEEEeCCCCeEEEEEe---ccCCcccEEEEEEcccCCCCeEEEe
Q 021291 6 PPPDPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSW---VHSAAHGIVSVATGPSIGLNKVISQ 82 (314)
Q Consensus 6 ~~~~~~~~l~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~---~~~~~~~v~~~~~~~~~~~~~l~s~ 82 (314)
||-+.-.+++.|..-|+|+.|+|||.++||++.||.|.+||=.+++.+..+. +|.+ .|.+++|+| |+..|+++
T Consensus 178 PPFKFk~s~r~HskFV~~VRysPDG~~Fat~gsDgki~iyDGktge~vg~l~~~~aHkG--sIfalsWsP--Ds~~~~T~ 253 (603)
T KOG0318|consen 178 PPFKFKSSFREHSKFVNCVRYSPDGSRFATAGSDGKIYIYDGKTGEKVGELEDSDAHKG--SIFALSWSP--DSTQFLTV 253 (603)
T ss_pred CCeeeeecccccccceeeEEECCCCCeEEEecCCccEEEEcCCCccEEEEecCCCCccc--cEEEEEECC--CCceEEEe
Confidence 5668888999999999999999999999999999999999999999999998 7774 499999999 99999999
Q ss_pred ecCCeEEEEeCCCCCCCCCCeeeeecceeeEEEeeeee-ccccccccCCCCcceeeccCCceeeecCCCCCC----ceec
Q 021291 83 GRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVK-EPYANAKQANEPKDCYEREVGETVDTDSLCDSK----DDVP 157 (314)
Q Consensus 83 ~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~ 157 (314)
+.|.+++|||+.+.++++ .+.+... .....+.+.+ .........++....++..... +.....+|.. ++.+
T Consensus 254 SaDkt~KIWdVs~~slv~--t~~~~~~-v~dqqvG~lWqkd~lItVSl~G~in~ln~~d~~-~~~~i~GHnK~ITaLtv~ 329 (603)
T KOG0318|consen 254 SADKTIKIWDVSTNSLVS--TWPMGST-VEDQQVGCLWQKDHLITVSLSGTINYLNPSDPS-VLKVISGHNKSITALTVS 329 (603)
T ss_pred cCCceEEEEEeeccceEE--EeecCCc-hhceEEEEEEeCCeEEEEEcCcEEEEecccCCC-hhheecccccceeEEEEc
Confidence 999999999999998766 2222222 1111122222 2233334444555555555555 6667778877 8889
Q ss_pred cCCCceEEEeecCcCeEEEEecCCCcee-----------eeecccc----------------------cCC----CCCc-
Q 021291 158 AEGPKYMAVAGEQLSEVEIWDLNTAERC-----------TRLHQNS----------------------CGG----SPNF- 199 (314)
Q Consensus 158 ~~~~~~~~~~g~~d~~i~vwd~~~~~~~-----------~~~~~~~----------------------~~~----~~~h- 199 (314)
+++++++ +|+.||.|.-||..++..- ..+.... ... ..++
T Consensus 330 ~d~~~i~--SgsyDG~I~~W~~~~g~~~~~~g~~h~nqI~~~~~~~~~~~~t~g~Dd~l~~~~~~~~~~t~~~~~~lg~Q 407 (603)
T KOG0318|consen 330 PDGKTIY--SGSYDGHINSWDSGSGTSDRLAGKGHTNQIKGMAASESGELFTIGWDDTLRVISLKDNGYTKSEVVKLGSQ 407 (603)
T ss_pred CCCCEEE--eeccCceEEEEecCCccccccccccccceEEEEeecCCCcEEEEecCCeEEEEecccCcccccceeecCCC
Confidence 9997666 8999999999998665321 0000000 000 0000
Q ss_pred ---------------------------------------------------------------------------CCCCC
Q 021291 200 ---------------------------------------------------------------------------SSKGR 204 (314)
Q Consensus 200 ---------------------------------------------------------------------------~~~~~ 204 (314)
..+++
T Consensus 408 P~~lav~~d~~~avv~~~~~iv~l~~~~~~~~~~~~y~~s~vAv~~~~~~vaVGG~Dgkvhvysl~g~~l~ee~~~~~h~ 487 (603)
T KOG0318|consen 408 PKGLAVLSDGGTAVVACISDIVLLQDQTKVSSIPIGYESSAVAVSPDGSEVAVGGQDGKVHVYSLSGDELKEEAKLLEHR 487 (603)
T ss_pred ceeEEEcCCCCEEEEEecCcEEEEecCCcceeeccccccceEEEcCCCCEEEEecccceEEEEEecCCcccceeeeeccc
Confidence 01234
Q ss_pred ceeeeEEEecCCCCCCceEEEEeecCCcEEEEEccCCCCceEeeecCCcceEEEEEeCCCCeEEEecCCCcEEEEecCCC
Q 021291 205 GMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHS 284 (314)
Q Consensus 205 ~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~iw~~~~~ 284 (314)
+.++.++ |+|| +. +|++|...+.+.+||..+.......+.-|...|.+|+|+|+..++||||.|-.|.||+++.+
T Consensus 488 a~iT~va-ySpd---~~-yla~~Da~rkvv~yd~~s~~~~~~~w~FHtakI~~~aWsP~n~~vATGSlDt~Viiysv~kP 562 (603)
T KOG0318|consen 488 AAITDVA-YSPD---GA-YLAAGDASRKVVLYDVASREVKTNRWAFHTAKINCVAWSPNNKLVATGSLDTNVIIYSVKKP 562 (603)
T ss_pred CCceEEE-ECCC---Cc-EEEEeccCCcEEEEEcccCceecceeeeeeeeEEEEEeCCCceEEEeccccceEEEEEccCh
Confidence 5566776 8877 44 78888888888888887633333445569999999999999999999999999999999988
Q ss_pred eeeE
Q 021291 285 TYVL 288 (314)
Q Consensus 285 ~~~~ 288 (314)
....
T Consensus 563 ~~~i 566 (603)
T KOG0318|consen 563 AKHI 566 (603)
T ss_pred hhhe
Confidence 7653
No 18
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=100.00 E-value=3.1e-33 Score=232.43 Aligned_cols=235 Identities=17% Similarity=0.289 Sum_probs=191.7
Q ss_pred CCCCCCceEEecCCCCceeEEEEccCCCEEEEecCCCeEEEEeCCCCe-------------------------------E
Q 021291 4 RPPPPDPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHR-------------------------------T 52 (314)
Q Consensus 4 ~~~~~~~~~~l~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~-------------------------------~ 52 (314)
..+|.-+..++..-...++|..|++|+.+||.|-.|..|++|.+...+ .
T Consensus 364 ~~lpSic~YT~~nt~~~v~ca~fSddssmlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~ 443 (707)
T KOG0263|consen 364 NSLPSICMYTFHNTYQGVTCAEFSDDSSMLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGT 443 (707)
T ss_pred CCCCcEEEEEEEEcCCcceeEeecCCcchhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCCce
Confidence 345556777787777889999999999999999999999999987311 1
Q ss_pred EEEEeccCCcccEEEEEEcccCCCCeEEEeecCCeEEEEeCCCCCCCCCCeeeeecceeeEEEeeeeeccccccccCCCC
Q 021291 53 VSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEP 132 (314)
Q Consensus 53 ~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 132 (314)
..++.+|.++ |....|+| +.++|+++|.|+++|+|.+.+..+.. ..+.+....+.
T Consensus 444 ~~~L~GH~GP--Vyg~sFsP--d~rfLlScSED~svRLWsl~t~s~~V----~y~GH~~PVwd----------------- 498 (707)
T KOG0263|consen 444 SRTLYGHSGP--VYGCSFSP--DRRFLLSCSEDSSVRLWSLDTWSCLV----IYKGHLAPVWD----------------- 498 (707)
T ss_pred eEEeecCCCc--eeeeeecc--cccceeeccCCcceeeeecccceeEE----EecCCCcceee-----------------
Confidence 3446788855 99999999 99999999999999999999987643 33333222221
Q ss_pred cceeeccCCceeeecCCCCCCceeccCCCceEEEeecCcCeEEEEecCCCceeeeecccccCCCCCcCCCCCceeeeEEE
Q 021291 133 KDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQA 212 (314)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~ 212 (314)
+.|+|-|-+ ++ +++.|++-++|......+++.+. +|-. -+-|+.
T Consensus 499 ---------------------V~F~P~GyY-Fa-tas~D~tArLWs~d~~~PlRifa--------ghls----DV~cv~- 542 (707)
T KOG0263|consen 499 ---------------------VQFAPRGYY-FA-TASHDQTARLWSTDHNKPLRIFA--------GHLS----DVDCVS- 542 (707)
T ss_pred ---------------------EEecCCceE-EE-ecCCCceeeeeecccCCchhhhc--------cccc----ccceEE-
Confidence 457788743 43 67889999999999988888888 7844 566676
Q ss_pred ecCCCCCCceEEEEeecCCcEEEEEccCCCCceEeeecCCcceEEEEEeCCCCeEEEecCCCcEEEEecCCCeeeEee--
Q 021291 213 YLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTYVLFG-- 290 (314)
Q Consensus 213 ~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~iw~~~~~~~~~~~-- 290 (314)
|+|+.. |+++|+.|.+|++||+.+ +..++.+.||.++|++|+|+|+|++|++|+.||.|.+||+.+++.+...
T Consensus 543 FHPNs~----Y~aTGSsD~tVRlWDv~~-G~~VRiF~GH~~~V~al~~Sp~Gr~LaSg~ed~~I~iWDl~~~~~v~~l~~ 617 (707)
T KOG0263|consen 543 FHPNSN----YVATGSSDRTVRLWDVST-GNSVRIFTGHKGPVTALAFSPCGRYLASGDEDGLIKIWDLANGSLVKQLKG 617 (707)
T ss_pred ECCccc----ccccCCCCceEEEEEcCC-CcEEEEecCCCCceEEEEEcCCCceEeecccCCcEEEEEcCCCcchhhhhc
Confidence 999854 999999999999999998 8999999999999999999999999999999999999999998877653
Q ss_pred -----eeeeecCCCceece
Q 021291 291 -----IGFVCDQEGNKFGT 304 (314)
Q Consensus 291 -----~~~~~~~~~~~~~~ 304 (314)
..++++.+|..++.
T Consensus 618 Ht~ti~SlsFS~dg~vLas 636 (707)
T KOG0263|consen 618 HTGTIYSLSFSRDGNVLAS 636 (707)
T ss_pred ccCceeEEEEecCCCEEEe
Confidence 34567788877664
No 19
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=1.9e-32 Score=231.52 Aligned_cols=220 Identities=24% Similarity=0.377 Sum_probs=181.7
Q ss_pred ceEEecCCCCceeEEEEccCCCEEEEecCCCeEEEEeC-CCCeEEEEEeccCCcccEEEEEEcccCCCCeEEEeecCCeE
Q 021291 10 PVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDT-VQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTV 88 (314)
Q Consensus 10 ~~~~l~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~-~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~v 88 (314)
..+.+.+|...|.+++|+|+++++++++.|++|+|||+ ..+..++++++|... |++++|+| +++++++|+.|++|
T Consensus 195 ~~~~l~~h~~~v~~~~fs~d~~~l~s~s~D~tiriwd~~~~~~~~~~l~gH~~~--v~~~~f~p--~g~~i~Sgs~D~tv 270 (456)
T KOG0266|consen 195 LLRELSGHTRGVSDVAFSPDGSYLLSGSDDKTLRIWDLKDDGRNLKTLKGHSTY--VTSVAFSP--DGNLLVSGSDDGTV 270 (456)
T ss_pred hhccccccccceeeeEECCCCcEEEEecCCceEEEeeccCCCeEEEEecCCCCc--eEEEEecC--CCCEEEEecCCCcE
Confidence 67778999999999999999999999999999999999 556899999999955 99999999 88999999999999
Q ss_pred EEEeCCCCCCCCCCeeeeecceeeEEEeeeeeccccccccCCCCcceeeccCCceeeecCCCCCCceeccCCCceEEEee
Q 021291 89 KCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAG 168 (314)
Q Consensus 89 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 168 (314)
+|||++++++.. .+..+...... ++|++++..++ ++
T Consensus 271 riWd~~~~~~~~--~l~~hs~~is~----------------------------------------~~f~~d~~~l~--s~ 306 (456)
T KOG0266|consen 271 RIWDVRTGECVR--KLKGHSDGISG----------------------------------------LAFSPDGNLLV--SA 306 (456)
T ss_pred EEEeccCCeEEE--eeeccCCceEE----------------------------------------EEECCCCCEEE--Ec
Confidence 999999987655 33333333322 45888887554 45
Q ss_pred cCcCeEEEEecCCCc--eeeeecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEeecCCcEEEEEccCCCCceE
Q 021291 169 EQLSEVEIWDLNTAE--RCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLT 246 (314)
Q Consensus 169 ~~d~~i~vwd~~~~~--~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~~ 246 (314)
+.|+.|++||+.++. +...+. ++... . .+..+. |+|+ +. ++++++.|+.+++||++. ...+.
T Consensus 307 s~d~~i~vwd~~~~~~~~~~~~~--------~~~~~-~-~~~~~~-fsp~---~~-~ll~~~~d~~~~~w~l~~-~~~~~ 370 (456)
T KOG0266|consen 307 SYDGTIRVWDLETGSKLCLKLLS--------GAENS-A-PVTSVQ-FSPN---GK-YLLSASLDRTLKLWDLRS-GKSVG 370 (456)
T ss_pred CCCccEEEEECCCCceeeeeccc--------CCCCC-C-ceeEEE-ECCC---Cc-EEEEecCCCeEEEEEccC-Cccee
Confidence 779999999999998 455555 44332 2 677887 9998 55 999999999999999998 88888
Q ss_pred eeecCCcce---EEEEEeCCCCeEEEecCCCcEEEEecCCCeeeEeeeee
Q 021291 247 AMKVHLEPV---LCLSIDESCNGGISGGADQKIVLYNLDHSTYVLFGIGF 293 (314)
Q Consensus 247 ~~~~h~~~v---~~~~~~~~~~~l~s~s~dg~i~iw~~~~~~~~~~~~~~ 293 (314)
.+.+|...+ .+....+.+.++++|+.|+.|++|++.++..+....++
T Consensus 371 ~~~~~~~~~~~~~~~~~~~~~~~i~sg~~d~~v~~~~~~s~~~~~~l~~h 420 (456)
T KOG0266|consen 371 TYTGHSNLVRCIFSPTLSTGGKLIYSGSEDGSVYVWDSSSGGILQRLEGH 420 (456)
T ss_pred eecccCCcceeEecccccCCCCeEEEEeCCceEEEEeCCccchhhhhcCC
Confidence 899888754 33344789999999999999999999998877766555
No 20
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=100.00 E-value=8.3e-32 Score=205.37 Aligned_cols=283 Identities=14% Similarity=0.184 Sum_probs=209.1
Q ss_pred CCceEEecCCCCceeEEEEccCCCEEEEecCCCeEEEEeCCCCeEEEEEeccCCcccEEEEEEcccCCCCeEEEeecCCe
Q 021291 8 PDPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGT 87 (314)
Q Consensus 8 ~~~~~~l~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~ 87 (314)
...+.+|..|+++|.+++.+|+.++++||+.|..-.||++.+++....+.+|+.. |+++.|+. ++.+|+||+.+|.
T Consensus 54 DdS~~tF~~H~~svFavsl~P~~~l~aTGGgDD~AflW~~~~ge~~~eltgHKDS--Vt~~~Fsh--dgtlLATGdmsG~ 129 (399)
T KOG0296|consen 54 DDSLVTFDKHTDSVFAVSLHPNNNLVATGGGDDLAFLWDISTGEFAGELTGHKDS--VTCCSFSH--DGTLLATGDMSGK 129 (399)
T ss_pred ccceeehhhcCCceEEEEeCCCCceEEecCCCceEEEEEccCCcceeEecCCCCc--eEEEEEcc--CceEEEecCCCcc
Confidence 4567899999999999999999999999999999999999999999999999955 99999999 9999999999999
Q ss_pred EEEEeCCCCCCCCCCeeeeecceeeEEEeeeeeccccccccCCCCcceeeccCCceeeecCCCCCC----ceeccCCCce
Q 021291 88 VKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSK----DDVPAEGPKY 163 (314)
Q Consensus 88 v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~ 163 (314)
|+||+..++.... .+...........+.+ ...........+....|.+... .....+.+|.. -.|.|+|+++
T Consensus 130 v~v~~~stg~~~~--~~~~e~~dieWl~WHp-~a~illAG~~DGsvWmw~ip~~-~~~kv~~Gh~~~ct~G~f~pdGKr~ 205 (399)
T KOG0296|consen 130 VLVFKVSTGGEQW--KLDQEVEDIEWLKWHP-RAHILLAGSTDGSVWMWQIPSQ-ALCKVMSGHNSPCTCGEFIPDGKRI 205 (399)
T ss_pred EEEEEcccCceEE--EeecccCceEEEEecc-cccEEEeecCCCcEEEEECCCc-ceeeEecCCCCCcccccccCCCceE
Confidence 9999999987644 2222333444444444 2233334455566666676665 45556677776 6799999977
Q ss_pred EEEeecCcCeEEEEecCCCceeeeecccccCCC-------CCcC-------------CCCCc------------------
Q 021291 164 MAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGS-------PNFS-------------SKGRG------------------ 205 (314)
Q Consensus 164 ~~~~g~~d~~i~vwd~~~~~~~~~~~~~~~~~~-------~~h~-------------~~~~~------------------ 205 (314)
+ ++..||+|++||+.++.++..+........ .++. ....+
T Consensus 206 ~--tgy~dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e 283 (399)
T KOG0296|consen 206 L--TGYDDGTIIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVNCNNGTVPELKPSQE 283 (399)
T ss_pred E--EEecCceEEEEecCCCceeEEecccccCcCCccccccccceeEeccCCccEEEEccccceEEEecCCCCccccccch
Confidence 6 688899999999999998877762111000 0000 00001
Q ss_pred -eeeeEEEecCCCCCCceEEEEeecCCcEEEEEccCCCCceEeeecCCcceEEEEEeCCCCeEEEecCCCcEEEEecCCC
Q 021291 206 -MCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHS 284 (314)
Q Consensus 206 -~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~iw~~~~~ 284 (314)
..-++. +.|....=. +.|+|+.||+|.|||+.. . .++..-.|..+|+.+.|.+ ..+|++++.||.|+.||.++|
T Consensus 284 ~~~esve-~~~~ss~lp-L~A~G~vdG~i~iyD~a~-~-~~R~~c~he~~V~~l~w~~-t~~l~t~c~~g~v~~wDaRtG 358 (399)
T KOG0296|consen 284 ELDESVE-SIPSSSKLP-LAACGSVDGTIAIYDLAA-S-TLRHICEHEDGVTKLKWLN-TDYLLTACANGKVRQWDARTG 358 (399)
T ss_pred hhhhhhh-hcccccccc-hhhcccccceEEEEeccc-c-hhheeccCCCceEEEEEcC-cchheeeccCceEEeeecccc
Confidence 111222 223222112 689999999999999985 4 4445556999999999988 668999999999999999999
Q ss_pred eeeEee-------eeeeecCCCceecee
Q 021291 285 TYVLFG-------IGFVCDQEGNKFGTT 305 (314)
Q Consensus 285 ~~~~~~-------~~~~~~~~~~~~~~~ 305 (314)
+.++.. ..|+..|+++.+.++
T Consensus 359 ~l~~~y~GH~~~Il~f~ls~~~~~vvT~ 386 (399)
T KOG0296|consen 359 QLKFTYTGHQMGILDFALSPQKRLVVTV 386 (399)
T ss_pred ceEEEEecCchheeEEEEcCCCcEEEEe
Confidence 998874 456777888776653
No 21
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=100.00 E-value=8.9e-35 Score=220.68 Aligned_cols=233 Identities=19% Similarity=0.315 Sum_probs=143.4
Q ss_pred CCceeEEEEccCCCEEEEecCCCeEEEEeCCCCeEEEEEeccCCcccEEEEEEcccCCCCeEEEeecCCeEEEEeCCCCC
Q 021291 18 RASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGG 97 (314)
Q Consensus 18 ~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~ 97 (314)
.+.|.|+.+. ...+++|..|++|+|||..+..++..+.+|.+. |.|+.|.. ..+++|+.|.+|++||+++++
T Consensus 197 skgVYClQYD--D~kiVSGlrDnTikiWD~n~~~c~~~L~GHtGS--VLCLqyd~----rviisGSSDsTvrvWDv~tge 268 (499)
T KOG0281|consen 197 SKGVYCLQYD--DEKIVSGLRDNTIKIWDKNSLECLKILTGHTGS--VLCLQYDE----RVIVSGSSDSTVRVWDVNTGE 268 (499)
T ss_pred CCceEEEEec--chhhhcccccCceEEeccccHHHHHhhhcCCCc--EEeeeccc----eEEEecCCCceEEEEeccCCc
Confidence 3445555552 234555555555555555555555555555555 55555555 355555555555555555555
Q ss_pred CCCCCeeeeecceeeEEEeeeeeccccccccCCCCcceeeccCCc--eeeecCCCCCC--ceeccCCCceEEEeecCcCe
Q 021291 98 LSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGE--TVDTDSLCDSK--DDVPAEGPKYMAVAGEQLSE 173 (314)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~--~~~~~~~~~~~~~~g~~d~~ 173 (314)
.++ .+-.+........++ ..............+|++.... .....+.+|.. -....+.++++ +++.|.+
T Consensus 269 ~l~--tlihHceaVLhlrf~---ng~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVNvVdfd~kyIV--sASgDRT 341 (499)
T KOG0281|consen 269 PLN--TLIHHCEAVLHLRFS---NGYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDDKYIV--SASGDRT 341 (499)
T ss_pred hhh--HHhhhcceeEEEEEe---CCEEEEecCCceeEEEeccCchHHHHHHHHhhhhhheeeeccccceEE--EecCCce
Confidence 544 111111111111110 0001111112233344443222 22334455554 23334445333 5666899
Q ss_pred EEEEecCCCceeeeecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEeecCCcEEEEEccCCCCceEeeecCCc
Q 021291 174 VEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHLE 253 (314)
Q Consensus 174 i~vwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~h~~ 253 (314)
|++|++.+++.++++. +|. ..+.|++ |. |+ ++++|+.|.+|++||+.. +.++..++||.+
T Consensus 342 ikvW~~st~efvRtl~--------gHk----RGIAClQ-Yr-----~r-lvVSGSSDntIRlwdi~~-G~cLRvLeGHEe 401 (499)
T KOG0281|consen 342 IKVWSTSTCEFVRTLN--------GHK----RGIACLQ-YR-----DR-LVVSGSSDNTIRLWDIEC-GACLRVLEGHEE 401 (499)
T ss_pred EEEEeccceeeehhhh--------ccc----ccceehh-cc-----Ce-EEEecCCCceEEEEeccc-cHHHHHHhchHH
Confidence 9999999999999998 783 3455665 65 55 999999999999999998 999999999999
Q ss_pred ceEEEEEeCCCCeEEEecCCCcEEEEecCCCeee
Q 021291 254 PVLCLSIDESCNGGISGGADQKIVLYNLDHSTYV 287 (314)
Q Consensus 254 ~v~~~~~~~~~~~l~s~s~dg~i~iw~~~~~~~~ 287 (314)
-|.++.|+.. .+++|+.||+|++||+..+...
T Consensus 402 LvRciRFd~k--rIVSGaYDGkikvWdl~aaldp 433 (499)
T KOG0281|consen 402 LVRCIRFDNK--RIVSGAYDGKIKVWDLQAALDP 433 (499)
T ss_pred hhhheeecCc--eeeeccccceEEEEecccccCC
Confidence 9999999876 7899999999999999877543
No 22
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=1.7e-31 Score=221.13 Aligned_cols=214 Identities=21% Similarity=0.359 Sum_probs=177.5
Q ss_pred eEEecCCCCceeEEEEccCCCEEEEecCCCeEEEEeCCCCeEEEEEeccCCcccEEEEEEcccCCCCeEEEeecCCeEEE
Q 021291 11 VAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKC 90 (314)
Q Consensus 11 ~~~l~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~v~i 90 (314)
+-..+||...+++++++|||+++|||+.||.|+|||...+-|..++..|.. .|+.+.|+. .++.+++++.||+|+.
T Consensus 343 VlKQQgH~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~SgfC~vTFteHts--~Vt~v~f~~--~g~~llssSLDGtVRA 418 (893)
T KOG0291|consen 343 VLKQQGHSDRITSLAYSPDGQLIATGAEDGKVKVWNTQSGFCFVTFTEHTS--GVTAVQFTA--RGNVLLSSSLDGTVRA 418 (893)
T ss_pred eeeccccccceeeEEECCCCcEEEeccCCCcEEEEeccCceEEEEeccCCC--ceEEEEEEe--cCCEEEEeecCCeEEe
Confidence 344569999999999999999999999999999999999999999999994 499999999 9999999999999999
Q ss_pred EeCCCCCCCCCCeeeeecceeeEEEeeeeeccccccccCCCCcceeeccCCceeeecCCCCCCceeccCCCceEEEeecC
Q 021291 91 WDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQ 170 (314)
Q Consensus 91 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 170 (314)
||+...+..+ .++.+....-.| ++..|.|. ++++|+.
T Consensus 419 wDlkRYrNfR--Tft~P~p~Qfsc---------------------------------------vavD~sGe--lV~AG~~ 455 (893)
T KOG0291|consen 419 WDLKRYRNFR--TFTSPEPIQFSC---------------------------------------VAVDPSGE--LVCAGAQ 455 (893)
T ss_pred eeecccceee--eecCCCceeeeE---------------------------------------EEEcCCCC--EEEeecc
Confidence 9998876544 333222222222 45667776 3345665
Q ss_pred cC-eEEEEecCCCceeeeecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEeecCCcEEEEEccCCCCceEeee
Q 021291 171 LS-EVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMK 249 (314)
Q Consensus 171 d~-~i~vwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~~~~~ 249 (314)
|. .|++|++++|+.+-.+. || .+++.++. |+|. |. .|++|+.|.+|++||+-.....+.++.
T Consensus 456 d~F~IfvWS~qTGqllDiLs--------GH----EgPVs~l~-f~~~---~~-~LaS~SWDkTVRiW~if~s~~~vEtl~ 518 (893)
T KOG0291|consen 456 DSFEIFVWSVQTGQLLDILS--------GH----EGPVSGLS-FSPD---GS-LLASGSWDKTVRIWDIFSSSGTVETLE 518 (893)
T ss_pred ceEEEEEEEeecCeeeehhc--------CC----CCcceeeE-Eccc---cC-eEEeccccceEEEEEeeccCceeeeEe
Confidence 54 69999999999999998 88 55777776 9998 44 999999999999999986444566665
Q ss_pred cCCcceEEEEEeCCCCeEEEecCCCcEEEEecCCCeeeEe
Q 021291 250 VHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTYVLF 289 (314)
Q Consensus 250 ~h~~~v~~~~~~~~~~~l~s~s~dg~i~iw~~~~~~~~~~ 289 (314)
+...++.++|.|+|+.|+++..||.|.+||...+.++..
T Consensus 519 -i~sdvl~vsfrPdG~elaVaTldgqItf~d~~~~~q~~~ 557 (893)
T KOG0291|consen 519 -IRSDVLAVSFRPDGKELAVATLDGQITFFDIKEAVQVGS 557 (893)
T ss_pred -eccceeEEEEcCCCCeEEEEEecceEEEEEhhhceeecc
Confidence 578899999999999999999999999999998877743
No 23
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=100.00 E-value=9.8e-32 Score=196.43 Aligned_cols=264 Identities=18% Similarity=0.270 Sum_probs=200.0
Q ss_pred eEEecCCCCceeEEEEccCCCEEEEecCCCeEEEEeCCCCeEEEEE--eccCCcccEEEEEEcccCCCCeEEEeecCCeE
Q 021291 11 VAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSS--WVHSAAHGIVSVATGPSIGLNKVISQGRDGTV 88 (314)
Q Consensus 11 ~~~l~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~--~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~v 88 (314)
-+.+++|...|.+++|+.+|..|++|+.|+++++|+++..+....+ ++|. +.|-.++|.|. ..+.|++++.|.+|
T Consensus 13 ~r~~~~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~~~~~~~~gh~--~svdql~w~~~-~~d~~atas~dk~i 89 (313)
T KOG1407|consen 13 RRELQGHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDRFRKELVYRGHT--DSVDQLCWDPK-HPDLFATASGDKTI 89 (313)
T ss_pred hHHhhhhhhcceEEEEcccCceeeecccCCceEEEEecchhhhhhhcccCCC--cchhhheeCCC-CCcceEEecCCceE
Confidence 3677899999999999999999999999999999999987655544 4565 45999999986 55899999999999
Q ss_pred EEEeCCCCCCCCCCeeeeecceeeEEEeeeeeccccccccCC---CCcceeeccCCceeee-cCCCCCC-ceeccCCCce
Q 021291 89 KCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQAN---EPKDCYEREVGETVDT-DSLCDSK-DDVPAEGPKY 163 (314)
Q Consensus 89 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~-~~~~~~~-~~~~~~~~~~ 163 (314)
++||++.+++.. ........ +...+++.......+ .....++.+..+.... .+..... ++|+.+++.+
T Consensus 90 r~wd~r~~k~~~----~i~~~~en---i~i~wsp~g~~~~~~~kdD~it~id~r~~~~~~~~~~~~e~ne~~w~~~nd~F 162 (313)
T KOG1407|consen 90 RIWDIRSGKCTA----RIETKGEN---INITWSPDGEYIAVGNKDDRITFIDARTYKIVNEEQFKFEVNEISWNNSNDLF 162 (313)
T ss_pred EEEEeccCcEEE----EeeccCcc---eEEEEcCCCCEEEEecCcccEEEEEecccceeehhcccceeeeeeecCCCCEE
Confidence 999999997644 22221111 122223333222222 2233334444333222 2222222 8888777766
Q ss_pred EEEeecCcCeEEEEecCCCceeeeecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEeecCCcEEEEEccCCCC
Q 021291 164 MAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGI 243 (314)
Q Consensus 164 ~~~~g~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~ 243 (314)
++.+| .|+|.|......+++..++ +|+ ..|+++. |+|+ |+ ++|+|+.|..+.+||++. -.
T Consensus 163 flt~G--lG~v~ILsypsLkpv~si~--------AH~----snCicI~-f~p~---Gr-yfA~GsADAlvSLWD~~E-Li 222 (313)
T KOG1407|consen 163 FLTNG--LGCVEILSYPSLKPVQSIK--------AHP----SNCICIE-FDPD---GR-YFATGSADALVSLWDVDE-LI 222 (313)
T ss_pred EEecC--CceEEEEeccccccccccc--------cCC----cceEEEE-ECCC---Cc-eEeeccccceeeccChhH-hh
Confidence 66555 4999999999999999998 784 5799998 9998 66 999999999999999997 77
Q ss_pred ceEeeecCCcceEEEEEeCCCCeEEEecCCCcEEEEecCCCeeeEeeeeeeecCCCceeceeeccc
Q 021291 244 PLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTYVLFGIGFVCDQEGNKFGTTWHIR 309 (314)
Q Consensus 244 ~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~ 309 (314)
+++.+.-+.-+|..|.|+-+|++||++|.|..|-|=++++|.+++.+. -++..+...||+-
T Consensus 223 C~R~isRldwpVRTlSFS~dg~~lASaSEDh~IDIA~vetGd~~~eI~-----~~~~t~tVAWHPk 283 (313)
T KOG1407|consen 223 CERCISRLDWPVRTLSFSHDGRMLASASEDHFIDIAEVETGDRVWEIP-----CEGPTFTVAWHPK 283 (313)
T ss_pred hheeeccccCceEEEEeccCcceeeccCccceEEeEecccCCeEEEee-----ccCCceeEEecCC
Confidence 888999999999999999999999999999999999999999987642 3455566666653
No 24
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1.1e-31 Score=204.54 Aligned_cols=222 Identities=17% Similarity=0.265 Sum_probs=187.0
Q ss_pred CceEEecCCCCceeEEEEccCCCEEEEecCCCeEEEEeCCCCeEEEEEeccCCcccEEEEEEcccCCCCeEEEeecCCeE
Q 021291 9 DPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTV 88 (314)
Q Consensus 9 ~~~~~l~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~v 88 (314)
++++.+.||...|.++.|-|.|.++++++.|.+|+.|++.++.++.++.+|. ..|.-++.+. ||..+++++.|.+|
T Consensus 184 ~c~ks~~gh~h~vS~V~f~P~gd~ilS~srD~tik~We~~tg~cv~t~~~h~--ewvr~v~v~~--DGti~As~s~dqtl 259 (406)
T KOG0295|consen 184 RCIKSLIGHEHGVSSVFFLPLGDHILSCSRDNTIKAWECDTGYCVKTFPGHS--EWVRMVRVNQ--DGTIIASCSNDQTL 259 (406)
T ss_pred HHHHHhcCcccceeeEEEEecCCeeeecccccceeEEecccceeEEeccCch--HhEEEEEecC--CeeEEEecCCCceE
Confidence 4567788999999999999999999999999999999999999999999998 5699999998 99999999999999
Q ss_pred EEEeCCCCCCCCCCeeeeecceeeEEEeeeeeccccccccCCCCcceeeccCCceeeecCCCCCCceeccCCCceEEEee
Q 021291 89 KCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAG 168 (314)
Q Consensus 89 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 168 (314)
++|-+.++++.. ++..+.++.....+.+.........+.+ +.++..+ +.++
T Consensus 260 ~vW~~~t~~~k~--~lR~hEh~vEci~wap~~~~~~i~~at~--------------------------~~~~~~~-l~s~ 310 (406)
T KOG0295|consen 260 RVWVVATKQCKA--ELREHEHPVECIAWAPESSYPSISEATG--------------------------STNGGQV-LGSG 310 (406)
T ss_pred EEEEeccchhhh--hhhccccceEEEEecccccCcchhhccC--------------------------CCCCccE-EEee
Confidence 999999997755 6666666666666655433211111110 0112233 3489
Q ss_pred cCcCeEEEEecCCCceeeeecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEeecCCcEEEEEccCCCCceEee
Q 021291 169 EQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAM 248 (314)
Q Consensus 169 ~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~~~~ 248 (314)
+.|++|++||+.++.++.++. +|.. .+..++ |+|. |+ ||+++..|+++++||+++ .+++..+
T Consensus 311 SrDktIk~wdv~tg~cL~tL~--------ghdn----wVr~~a-f~p~---Gk-yi~ScaDDktlrvwdl~~-~~cmk~~ 372 (406)
T KOG0295|consen 311 SRDKTIKIWDVSTGMCLFTLV--------GHDN----WVRGVA-FSPG---GK-YILSCADDKTLRVWDLKN-LQCMKTL 372 (406)
T ss_pred cccceEEEEeccCCeEEEEEe--------cccc----eeeeeE-EcCC---Ce-EEEEEecCCcEEEEEecc-ceeeecc
Confidence 999999999999999999999 8855 666676 9997 66 999999999999999999 9999999
Q ss_pred ecCCcceEEEEEeCCCCeEEEecCCCcEEEEec
Q 021291 249 KVHLEPVLCLSIDESCNGGISGGADQKIVLYNL 281 (314)
Q Consensus 249 ~~h~~~v~~~~~~~~~~~l~s~s~dg~i~iw~~ 281 (314)
..|..-|++++|+.+..+++||+-|..+++|.-
T Consensus 373 ~ah~hfvt~lDfh~~~p~VvTGsVdqt~KvwEc 405 (406)
T KOG0295|consen 373 EAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWEC 405 (406)
T ss_pred CCCcceeEEEecCCCCceEEeccccceeeeeec
Confidence 999999999999999999999999999999963
No 25
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=6.5e-32 Score=219.30 Aligned_cols=253 Identities=16% Similarity=0.221 Sum_probs=214.3
Q ss_pred ceEEecCCCCceeEEEEccCCCEEEEecCCCeEEEEeCCCCeEEEEEeccCCcccEEEEEEcccCCCCeEEEeecCCeEE
Q 021291 10 PVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVK 89 (314)
Q Consensus 10 ~~~~l~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~v~ 89 (314)
.-+.+..|+..|.++.|+|....++++-.+|.|.|||.++...++.+.... .+|.+..|-+ ..+.+++|++|..|+
T Consensus 5 ~krk~~~rSdRVKsVd~HPtePw~la~LynG~V~IWnyetqtmVksfeV~~--~PvRa~kfia--RknWiv~GsDD~~Ir 80 (794)
T KOG0276|consen 5 FKRKFQSRSDRVKSVDFHPTEPWILAALYNGDVQIWNYETQTMVKSFEVSE--VPVRAAKFIA--RKNWIVTGSDDMQIR 80 (794)
T ss_pred hhhHhhccCCceeeeecCCCCceEEEeeecCeeEEEecccceeeeeeeecc--cchhhheeee--ccceEEEecCCceEE
Confidence 345566799999999999999999999999999999999999999998877 4599999999 678999999999999
Q ss_pred EEeCCCCCCCCCCeeeeecceeeEEEeeeeeccccccccCCCCcceeeccCCceeeecCCCCCC----ceeccCCCceEE
Q 021291 90 CWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSK----DDVPAEGPKYMA 165 (314)
Q Consensus 90 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~ 165 (314)
+|+.++++.+. .++.+..........+. .|......+....+.|+.+........+.+|.. ++|.|...+-++
T Consensus 81 Vfnynt~ekV~--~FeAH~DyIR~iavHPt-~P~vLtsSDDm~iKlW~we~~wa~~qtfeGH~HyVMqv~fnPkD~ntFa 157 (794)
T KOG0276|consen 81 VFNYNTGEKVK--TFEAHSDYIRSIAVHPT-LPYVLTSSDDMTIKLWDWENEWACEQTFEGHEHYVMQVAFNPKDPNTFA 157 (794)
T ss_pred EEecccceeeE--EeeccccceeeeeecCC-CCeEEecCCccEEEEeeccCceeeeeEEcCcceEEEEEEecCCCcccee
Confidence 99999998765 44444444444444333 233444556677888999999999999999999 899999888876
Q ss_pred EeecCcCeEEEEecCCCceeeeecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEeecCCcEEEEEccCCCCce
Q 021291 166 VAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPL 245 (314)
Q Consensus 166 ~~g~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~ 245 (314)
+++.|++|++|.+.+..+..++. +|.. .+.++. |-|-+. .. +|++|+.|.+|+|||.++ ..++
T Consensus 158 -S~sLDrTVKVWslgs~~~nfTl~--------gHek----GVN~Vd-yy~~gd-kp-ylIsgaDD~tiKvWDyQt-k~CV 220 (794)
T KOG0276|consen 158 -SASLDRTVKVWSLGSPHPNFTLE--------GHEK----GVNCVD-YYTGGD-KP-YLISGADDLTIKVWDYQT-KSCV 220 (794)
T ss_pred -eeeccccEEEEEcCCCCCceeee--------cccc----CcceEE-eccCCC-cc-eEEecCCCceEEEeecch-HHHH
Confidence 78889999999999999999998 8844 566776 777531 33 999999999999999999 9999
Q ss_pred EeeecCCcceEEEEEeCCCCeEEEecCCCcEEEEecCCCee
Q 021291 246 TAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTY 286 (314)
Q Consensus 246 ~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~iw~~~~~~~ 286 (314)
+++.||...|..+.|+|.-..++|||.||++|||+-.+-+.
T Consensus 221 ~TLeGHt~Nvs~v~fhp~lpiiisgsEDGTvriWhs~Ty~l 261 (794)
T KOG0276|consen 221 QTLEGHTNNVSFVFFHPELPIIISGSEDGTVRIWNSKTYKL 261 (794)
T ss_pred HHhhcccccceEEEecCCCcEEEEecCCccEEEecCcceeh
Confidence 99999999999999999999999999999999999776554
No 26
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=8.9e-32 Score=208.44 Aligned_cols=257 Identities=16% Similarity=0.212 Sum_probs=183.9
Q ss_pred CCCCCceEEecCCCCceeEEEEccCCCEEEEecCCCeEEEEeCCCC---eEEEEEeccCCcccEEEEEEcccCCCCeEEE
Q 021291 5 PPPPDPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQH---RTVSSSWVHSAAHGIVSVATGPSIGLNKVIS 81 (314)
Q Consensus 5 ~~~~~~~~~l~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~---~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s 81 (314)
..|.+..++|..|+++|+.+.||++|+|||+++.|.+..+|++... +...++.+|..+ |..+.|+| |.++|++
T Consensus 211 qip~qt~qil~~htdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tlvgh~~~--V~yi~wSP--DdryLla 286 (519)
T KOG0293|consen 211 QIPSQTWQILQDHTDEVWFLQFSHNGKYLASASKDSTAIIWIVVYDVHFKLKKTLVGHSQP--VSYIMWSP--DDRYLLA 286 (519)
T ss_pred cCCchhhhhHhhCCCcEEEEEEcCCCeeEeeccCCceEEEEEEecCcceeeeeeeecccCc--eEEEEECC--CCCeEEe
Confidence 4567888999999999999999999999999999999999997654 447788899854 99999999 9999999
Q ss_pred eecCCeEEEEeCCCCCCCCCCeeee-ecceeeEEEeeeeeccccccccCC---------CCc---------ceeecc---
Q 021291 82 QGRDGTVKCWDIENGGLSSNPSLTI-KTNSYHFCKLSLVKEPYANAKQAN---------EPK---------DCYERE--- 139 (314)
Q Consensus 82 ~~~dg~v~iwd~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~---------~~~---------~~~~~~--- 139 (314)
|+.|..+.+||+.++.+.. .+.. .......|.+.+++........+. ... .++++.
T Consensus 287 Cg~~e~~~lwDv~tgd~~~--~y~~~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlDgn~~~~W~gvr~~~v~dlait~ 364 (519)
T KOG0293|consen 287 CGFDEVLSLWDVDTGDLRH--LYPSGLGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLDGNILGNWEGVRDPKVHDLAITY 364 (519)
T ss_pred cCchHheeeccCCcchhhh--hcccCcCCCcceeEEccCCceeEecCCCCcEEEecCCcchhhcccccccceeEEEEEcC
Confidence 9999999999999998765 2222 234555666655543322111111 000 111221
Q ss_pred CCceee------------------e-cCCCCCC---ceeccCCCceEEEeecCcCeEEEEecCCCceeeeecccccCCCC
Q 021291 140 VGETVD------------------T-DSLCDSK---DDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSP 197 (314)
Q Consensus 140 ~~~~~~------------------~-~~~~~~~---~~~~~~~~~~~~~~g~~d~~i~vwd~~~~~~~~~~~~~~~~~~~ 197 (314)
.++.+. . ....+.. .++|.+++..++ .-.+..+++||++....+..+.
T Consensus 365 Dgk~vl~v~~d~~i~l~~~e~~~dr~lise~~~its~~iS~d~k~~Lv--nL~~qei~LWDl~e~~lv~kY~-------- 434 (519)
T KOG0293|consen 365 DGKYVLLVTVDKKIRLYNREARVDRGLISEEQPITSFSISKDGKLALV--NLQDQEIHLWDLEENKLVRKYF-------- 434 (519)
T ss_pred CCcEEEEEecccceeeechhhhhhhccccccCceeEEEEcCCCcEEEE--EcccCeeEEeecchhhHHHHhh--------
Confidence 111000 0 0111222 556677765443 4446889999999888887777
Q ss_pred CcCCCCCceeeeEEEecCCCCCCceEEEEeecCCcEEEEEccCCCCceEeeecCCcceEEEEEeCCC-CeEEEecCCCcE
Q 021291 198 NFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESC-NGGISGGADQKI 276 (314)
Q Consensus 198 ~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~~-~~l~s~s~dg~i 276 (314)
||.... .+..- ||--- +..++++|++|+.|+||+..+ ++++..+.||...|++++|+|.. ..+|++|+||+|
T Consensus 435 Ghkq~~--fiIrS-CFgg~---~~~fiaSGSED~kvyIWhr~s-gkll~~LsGHs~~vNcVswNP~~p~m~ASasDDgtI 507 (519)
T KOG0293|consen 435 GHKQGH--FIIRS-CFGGG---NDKFIASGSEDSKVYIWHRIS-GKLLAVLSGHSKTVNCVSWNPADPEMFASASDDGTI 507 (519)
T ss_pred cccccc--eEEEe-ccCCC---CcceEEecCCCceEEEEEccC-CceeEeecCCcceeeEEecCCCCHHHhhccCCCCeE
Confidence 775422 23322 26543 212999999999999999998 99999999999999999998855 468999999999
Q ss_pred EEEecCCC
Q 021291 277 VLYNLDHS 284 (314)
Q Consensus 277 ~iw~~~~~ 284 (314)
|||.....
T Consensus 508 RIWg~~~~ 515 (519)
T KOG0293|consen 508 RIWGPSDN 515 (519)
T ss_pred EEecCCcc
Confidence 99987643
No 27
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=100.00 E-value=9.7e-33 Score=213.29 Aligned_cols=245 Identities=17% Similarity=0.275 Sum_probs=188.8
Q ss_pred EecCCCCceeEEEEccCCCEEEEecCCCeEEEEeCCCCeEEEEEeccCCcccEEEEEEcccCCCCeEEEeecCCeEEEEe
Q 021291 13 VLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWD 92 (314)
Q Consensus 13 ~l~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd 92 (314)
.+++|.++|+++.|+++|.++++|+.+|.|++|+.. ...++.++.|.. ..|.+++|+| +...|+++++||+|+|||
T Consensus 133 ilQaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpn-mnnVk~~~ahh~-eaIRdlafSp--nDskF~t~SdDg~ikiWd 208 (464)
T KOG0284|consen 133 ILQAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPN-MNNVKIIQAHHA-EAIRDLAFSP--NDSKFLTCSDDGTIKIWD 208 (464)
T ss_pred HhhhhcccceeEEEccCCCEEEEcCCCceEEecccc-hhhhHHhhHhhh-hhhheeccCC--CCceeEEecCCCeEEEEe
Confidence 456899999999999999999999999999999965 344555555542 4499999999 779999999999999999
Q ss_pred CCCCCCCCCCeeeeecceeeEEEeeeeeccccccccCCCCcceeeccCCceeeecCCCCCC----ceeccCCCceEEEee
Q 021291 93 IENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSK----DDVPAEGPKYMAVAG 168 (314)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~g 168 (314)
....+... ++..+.-....+.+.+..........+. .+..|+.+.+..+. .+.+|.. +.|+++++.++ ++
T Consensus 209 f~~~kee~--vL~GHgwdVksvdWHP~kgLiasgskDn-lVKlWDprSg~cl~-tlh~HKntVl~~~f~~n~N~Ll--t~ 282 (464)
T KOG0284|consen 209 FRMPKEER--VLRGHGWDVKSVDWHPTKGLIASGSKDN-LVKLWDPRSGSCLA-TLHGHKNTVLAVKFNPNGNWLL--TG 282 (464)
T ss_pred ccCCchhh--eeccCCCCcceeccCCccceeEEccCCc-eeEeecCCCcchhh-hhhhccceEEEEEEcCCCCeeE--Ec
Confidence 98775433 4555555555555554443333322222 55666666655443 3445555 88999995443 78
Q ss_pred cCcCeEEEEecCCCceeeeecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEeecCCcEEEEEccCCCCceEee
Q 021291 169 EQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAM 248 (314)
Q Consensus 169 ~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~~~~ 248 (314)
+.|..++++|+++.+.+.++. +|.. .++++. |+|-..+ +|.+|+.||.|..|.+.. .+++..+
T Consensus 283 skD~~~kv~DiR~mkEl~~~r--------~Hkk----dv~~~~-WhP~~~~---lftsgg~Dgsvvh~~v~~-~~p~~~i 345 (464)
T KOG0284|consen 283 SKDQSCKVFDIRTMKELFTYR--------GHKK----DVTSLT-WHPLNES---LFTSGGSDGSVVHWVVGL-EEPLGEI 345 (464)
T ss_pred cCCceEEEEehhHhHHHHHhh--------cchh----hheeec-ccccccc---ceeeccCCCceEEEeccc-cccccCC
Confidence 899999999999988888888 7844 667776 9998442 899999999999999985 5555555
Q ss_pred e-cCCcceEEEEEeCCCCeEEEecCCCcEEEEecCCC
Q 021291 249 K-VHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHS 284 (314)
Q Consensus 249 ~-~h~~~v~~~~~~~~~~~l~s~s~dg~i~iw~~~~~ 284 (314)
. +|...|++++|+|-|..|++|+.|.++++|.-..+
T Consensus 346 ~~AHd~~iwsl~~hPlGhil~tgsnd~t~rfw~r~rp 382 (464)
T KOG0284|consen 346 PPAHDGEIWSLAYHPLGHILATGSNDRTVRFWTRNRP 382 (464)
T ss_pred CcccccceeeeeccccceeEeecCCCcceeeeccCCC
Confidence 4 89999999999999999999999999999976543
No 28
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=100.00 E-value=8.5e-31 Score=195.10 Aligned_cols=245 Identities=17% Similarity=0.200 Sum_probs=189.1
Q ss_pred CceEEecCCCCceeEEEEccCCCEEEEecCCCeEEEEeCCCCeEEEEEeccCCcccEEEEEEcccCCCCeEEEeecCCeE
Q 021291 9 DPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTV 88 (314)
Q Consensus 9 ~~~~~l~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~v 88 (314)
+-..+++||+++|..+.|.+|++.|++++.|.+|+.||.++|++.+.+++|. ..|..+.-+.. ...++.+++.||++
T Consensus 81 eN~~~lkgHsgAVM~l~~~~d~s~i~S~gtDk~v~~wD~~tG~~~rk~k~h~--~~vNs~~p~rr-g~~lv~SgsdD~t~ 157 (338)
T KOG0265|consen 81 ENFWVLKGHSGAVMELHGMRDGSHILSCGTDKTVRGWDAETGKRIRKHKGHT--SFVNSLDPSRR-GPQLVCSGSDDGTL 157 (338)
T ss_pred cceeeeccccceeEeeeeccCCCEEEEecCCceEEEEecccceeeehhcccc--ceeeecCcccc-CCeEEEecCCCceE
Confidence 3456788999999999999999999999999999999999999999999998 44888884442 33466689999999
Q ss_pred EEEeCCCCCCCCCCeeeeecceeeEEEeeeeecccc---ccccCCCCcceeeccCCceeeecCCCCCC----ceeccCCC
Q 021291 89 KCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYA---NAKQANEPKDCYEREVGETVDTDSLCDSK----DDVPAEGP 161 (314)
Q Consensus 89 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~ 161 (314)
++||+++.+.++.+.- .. ...++.+.... ..........+|+++.... ...+.+|.+ ++.+++|.
T Consensus 158 kl~D~R~k~~~~t~~~-----ky--qltAv~f~d~s~qv~sggIdn~ikvWd~r~~d~-~~~lsGh~DtIt~lsls~~gs 229 (338)
T KOG0265|consen 158 KLWDIRKKEAIKTFEN-----KY--QLTAVGFKDTSDQVISGGIDNDIKVWDLRKNDG-LYTLSGHADTITGLSLSRYGS 229 (338)
T ss_pred EEEeecccchhhcccc-----ce--eEEEEEecccccceeeccccCceeeeccccCcc-eEEeecccCceeeEEeccCCC
Confidence 9999998876652211 11 11222222222 2333444558888876543 345678877 88999998
Q ss_pred ceEEEeecCcCeEEEEecCCC----ceeeeecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEeecCCcEEEEE
Q 021291 162 KYMAVAGEQLSEVEIWDLNTA----ERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWD 237 (314)
Q Consensus 162 ~~~~~~g~~d~~i~vwd~~~~----~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd 237 (314)
+++ +-+.|.++++||++.. +++..+. +|.-...-....+. |+|+ +. .+.+|+.|..+++||
T Consensus 230 ~ll--snsMd~tvrvwd~rp~~p~~R~v~if~--------g~~hnfeknlL~cs-wsp~---~~-~i~ags~dr~vyvwd 294 (338)
T KOG0265|consen 230 FLL--SNSMDNTVRVWDVRPFAPSQRCVKIFQ--------GHIHNFEKNLLKCS-WSPN---GT-KITAGSADRFVYVWD 294 (338)
T ss_pred ccc--cccccceEEEEEecccCCCCceEEEee--------cchhhhhhhcceee-ccCC---CC-ccccccccceEEEee
Confidence 776 7888999999999843 3455565 55443344455555 9998 44 899999999999999
Q ss_pred ccCCCCceEeeecCCcceEEEEEeCCCCeEEEecCCCcEEEEe
Q 021291 238 IRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYN 280 (314)
Q Consensus 238 ~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~iw~ 280 (314)
... ...+..+.||.+.|++++|+|...+|.+++.|++|++=+
T Consensus 295 ~~~-r~~lyklpGh~gsvn~~~Fhp~e~iils~~sdk~i~lge 336 (338)
T KOG0265|consen 295 TTS-RRILYKLPGHYGSVNEVDFHPTEPIILSCSSDKTIYLGE 336 (338)
T ss_pred ccc-ccEEEEcCCcceeEEEeeecCCCcEEEEeccCceeEeec
Confidence 997 788999999999999999999999999999999998744
No 29
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=100.00 E-value=1.6e-29 Score=203.04 Aligned_cols=266 Identities=21% Similarity=0.354 Sum_probs=198.2
Q ss_pred eEEecCCCCceeEEEEccCCCEEEEecCCCeEEEEeCCCCeEEEEEeccCCcccEEEEEEcccCCCCeEEEeecCCeEEE
Q 021291 11 VAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKC 90 (314)
Q Consensus 11 ~~~l~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~v~i 90 (314)
++++++|.++|++++|+|++++|++++.||.|++|++.+++....+..|... +..+.|+| +++.|++++.||.|++
T Consensus 2 ~~~~~~h~~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~--i~~~~~~~--~~~~l~~~~~~~~i~i 77 (289)
T cd00200 2 RRTLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGP--VRDVAASA--DGTYLASGSSDKTIRL 77 (289)
T ss_pred chHhcccCCCEEEEEEcCCCCEEEEeecCcEEEEEEeeCCCcEEEEecCCcc--eeEEEECC--CCCEEEEEcCCCeEEE
Confidence 4678899999999999999999999999999999999988888888888744 89999999 8889999999999999
Q ss_pred EeCCCCCCCCCCeeeeecceeeEEEeeeeeccccccccCCCCcceeeccCCceeeecCCCCCC----ceeccCCCceEEE
Q 021291 91 WDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSK----DDVPAEGPKYMAV 166 (314)
Q Consensus 91 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~ 166 (314)
||+.+++... .+..+........+... ..........+...+|++...+... .+..|.. ++|+|++.. ++
T Consensus 78 ~~~~~~~~~~--~~~~~~~~i~~~~~~~~-~~~~~~~~~~~~i~~~~~~~~~~~~-~~~~~~~~i~~~~~~~~~~~-l~- 151 (289)
T cd00200 78 WDLETGECVR--TLTGHTSYVSSVAFSPD-GRILSSSSRDKTIKVWDVETGKCLT-TLRGHTDWVNSVAFSPDGTF-VA- 151 (289)
T ss_pred EEcCcccceE--EEeccCCcEEEEEEcCC-CCEEEEecCCCeEEEEECCCcEEEE-EeccCCCcEEEEEEcCcCCE-EE-
Confidence 9999865433 22222222333333322 1112222225666777776544332 2334543 888898653 33
Q ss_pred eecCcCeEEEEecCCCceeeeecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEeecCCcEEEEEccCCCCceE
Q 021291 167 AGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLT 246 (314)
Q Consensus 167 ~g~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~~ 246 (314)
+++.|+.|++||+++++....+. .| ...+.++. |+|+ ++ .+++++.++.|++||++. ++++.
T Consensus 152 ~~~~~~~i~i~d~~~~~~~~~~~--------~~----~~~i~~~~-~~~~---~~-~l~~~~~~~~i~i~d~~~-~~~~~ 213 (289)
T cd00200 152 SSSQDGTIKLWDLRTGKCVATLT--------GH----TGEVNSVA-FSPD---GE-KLLSSSSDGTIKLWDLST-GKCLG 213 (289)
T ss_pred EEcCCCcEEEEEccccccceeEe--------cC----ccccceEE-ECCC---cC-EEEEecCCCcEEEEECCC-Cceec
Confidence 56568999999999888877776 44 33677787 9998 44 688888899999999997 78888
Q ss_pred eeecCCcceEEEEEeCCCCeEEEecCCCcEEEEecCCCeeeEee-------eeeeecCCCceece
Q 021291 247 AMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTYVLFG-------IGFVCDQEGNKFGT 304 (314)
Q Consensus 247 ~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~iw~~~~~~~~~~~-------~~~~~~~~~~~~~~ 304 (314)
.+..|...+.++.|++++.++++++.||.|++|++.+++.+... ..+.+++++..+.+
T Consensus 214 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~ 278 (289)
T cd00200 214 TLRGHENGVNSVAFSPDGYLLASGSEDGTIRVWDLRTGECVQTLSGHTNSVTSLAWSPDGKRLAS 278 (289)
T ss_pred chhhcCCceEEEEEcCCCcEEEEEcCCCcEEEEEcCCceeEEEccccCCcEEEEEECCCCCEEEE
Confidence 88889999999999999888898888999999999987766543 33445565554443
No 30
>PTZ00421 coronin; Provisional
Probab=100.00 E-value=5.3e-30 Score=216.07 Aligned_cols=214 Identities=19% Similarity=0.302 Sum_probs=160.8
Q ss_pred EecCCCCceeEEEEcc-CCCEEEEecCCCeEEEEeCCCC-------eEEEEEeccCCcccEEEEEEcccCCC-CeEEEee
Q 021291 13 VLRGHRASVTDVCFHQ-TKPILFAGTTGGELRIWDTVQH-------RTVSSSWVHSAAHGIVSVATGPSIGL-NKVISQG 83 (314)
Q Consensus 13 ~l~~h~~~v~~~~~~~-~~~~l~s~~~dg~v~iwd~~~~-------~~~~~~~~~~~~~~v~~~~~~~~~~~-~~l~s~~ 83 (314)
.+.||.+.|++++|+| ++++|++|+.|++|++||+.++ +.+..+.+|.. .|.+++|+| ++ ++|++++
T Consensus 70 ~l~GH~~~V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~--~V~~l~f~P--~~~~iLaSgs 145 (493)
T PTZ00421 70 ILLGQEGPIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTK--KVGIVSFHP--SAMNVLASAG 145 (493)
T ss_pred eEeCCCCCEEEEEEcCCCCCEEEEEeCCCEEEEEecCCCccccccCcceEEecCCCC--cEEEEEeCc--CCCCEEEEEe
Confidence 4789999999999999 8899999999999999999764 34667888884 499999999 64 6899999
Q ss_pred cCCeEEEEeCCCCCCCCCCeeeeecceeeEEEeeeeeccccccccCCCCcceeeccCCceeeecCCCCCCceeccCCCce
Q 021291 84 RDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKY 163 (314)
Q Consensus 84 ~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (314)
.|++|+|||+++++... .+..+..... + ++|+|++..+
T Consensus 146 ~DgtVrIWDl~tg~~~~----~l~~h~~~V~--s------------------------------------la~spdG~lL 183 (493)
T PTZ00421 146 ADMVVNVWDVERGKAVE----VIKCHSDQIT--S------------------------------------LEWNLDGSLL 183 (493)
T ss_pred CCCEEEEEECCCCeEEE----EEcCCCCceE--E------------------------------------EEEECCCCEE
Confidence 99999999999875422 2222111110 0 5688998643
Q ss_pred EEEeecCcCeEEEEecCCCceeeeecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEe---ecCCcEEEEEccC
Q 021291 164 MAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAG---YEDGSILVWDIRN 240 (314)
Q Consensus 164 ~~~~g~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g---~~dg~i~vwd~~~ 240 (314)
+ +++.|++|++||+++++.+..+. +|... ....+. |.|+ +..++.+| +.|+.|++||+++
T Consensus 184 a--tgs~Dg~IrIwD~rsg~~v~tl~--------~H~~~---~~~~~~-w~~~---~~~ivt~G~s~s~Dr~VklWDlr~ 246 (493)
T PTZ00421 184 C--TTSKDKKLNIIDPRDGTIVSSVE--------AHASA---KSQRCL-WAKR---KDLIITLGCSKSQQRQIMLWDTRK 246 (493)
T ss_pred E--EecCCCEEEEEECCCCcEEEEEe--------cCCCC---cceEEE-EcCC---CCeEEEEecCCCCCCeEEEEeCCC
Confidence 3 67789999999999999888877 66432 222344 8876 33244444 3579999999998
Q ss_pred CCCceEeeecCC-cceEEEEEeCCCCeEEEec-CCCcEEEEecCCCeeeEe
Q 021291 241 PGIPLTAMKVHL-EPVLCLSIDESCNGGISGG-ADQKIVLYNLDHSTYVLF 289 (314)
Q Consensus 241 ~~~~~~~~~~h~-~~v~~~~~~~~~~~l~s~s-~dg~i~iw~~~~~~~~~~ 289 (314)
...++.....+. ..+....|++++.+|++++ .|+.|++||+.+++....
T Consensus 247 ~~~p~~~~~~d~~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~~~~~~ 297 (493)
T PTZ00421 247 MASPYSTVDLDQSSALFIPFFDEDTNLLYIGSKGEGNIRCFELMNERLTFC 297 (493)
T ss_pred CCCceeEeccCCCCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCCceEEE
Confidence 666666555443 3555667899999998887 599999999998876554
No 31
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=100.00 E-value=5.1e-32 Score=213.50 Aligned_cols=248 Identities=17% Similarity=0.261 Sum_probs=191.9
Q ss_pred CCCceEEecCCCCceeEEEEccCCCEEEEecCCCeEEEEeCCCCeEEEEEeccCCcccEEEEEEcccCCC-CeEEEeecC
Q 021291 7 PPDPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGL-NKVISQGRD 85 (314)
Q Consensus 7 ~~~~~~~l~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~~l~s~~~d 85 (314)
..+++++|.||..+|.+++|+++|..+++++.|+.|++||+++|+++..+... ..++|+.|.| ++ +.|++|+.|
T Consensus 247 ~~~~lrtf~gH~k~Vrd~~~s~~g~~fLS~sfD~~lKlwDtETG~~~~~f~~~---~~~~cvkf~p--d~~n~fl~G~sd 321 (503)
T KOG0282|consen 247 DRRCLRTFKGHRKPVRDASFNNCGTSFLSASFDRFLKLWDTETGQVLSRFHLD---KVPTCVKFHP--DNQNIFLVGGSD 321 (503)
T ss_pred CcceehhhhcchhhhhhhhccccCCeeeeeecceeeeeeccccceEEEEEecC---CCceeeecCC--CCCcEEEEecCC
Confidence 35789999999999999999999999999999999999999999999998654 4589999999 65 889999999
Q ss_pred CeEEEEeCCCCCCCCCCeeeeecceeeEEEeeeeeccccccccCCCCcceeeccCCceeeecC--CCCCC--ceeccCCC
Q 021291 86 GTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDS--LCDSK--DDVPAEGP 161 (314)
Q Consensus 86 g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~--~~~~~~~~ 161 (314)
+.|+.||+++++.++ .+.-+........|-..+ .......+.....+|..+..-.+.... ..|.- +..+|+++
T Consensus 322 ~ki~~wDiRs~kvvq--eYd~hLg~i~~i~F~~~g-~rFissSDdks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~ 398 (503)
T KOG0282|consen 322 KKIRQWDIRSGKVVQ--EYDRHLGAILDITFVDEG-RRFISSSDDKSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGK 398 (503)
T ss_pred CcEEEEeccchHHHH--HHHhhhhheeeeEEccCC-ceEeeeccCccEEEEEcCCCccchhhcchhhccCcceecCCCCC
Confidence 999999999998765 222222222222222222 223344445577777776654443332 22333 88899997
Q ss_pred ceEEEeecCcCeEEEEecCCCce---eeeecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEeecCCcEEEEEc
Q 021291 162 KYMAVAGEQLSEVEIWDLNTAER---CTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDI 238 (314)
Q Consensus 162 ~~~~~~g~~d~~i~vwd~~~~~~---~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~ 238 (314)
.++ +-+.|+.|.+|.+...-. ...|. ||.. .+....+. |+|| |+ +|++|+.||.+.+||.
T Consensus 399 ~~~--aQs~dN~i~ifs~~~~~r~nkkK~fe--------Gh~v--aGys~~v~-fSpD---G~-~l~SGdsdG~v~~wdw 461 (503)
T KOG0282|consen 399 WFA--AQSMDNYIAIFSTVPPFRLNKKKRFE--------GHSV--AGYSCQVD-FSPD---GR-TLCSGDSDGKVNFWDW 461 (503)
T ss_pred eeh--hhccCceEEEEecccccccCHhhhhc--------ceec--cCceeeEE-EcCC---CC-eEEeecCCccEEEeec
Confidence 554 577899999998764332 23444 6754 56677787 9998 66 9999999999999999
Q ss_pred cCCCCceEeeecCCcceEEEEEeCCC-CeEEEecCCCcEEEEe
Q 021291 239 RNPGIPLTAMKVHLEPVLCLSIDESC-NGGISGGADQKIVLYN 280 (314)
Q Consensus 239 ~~~~~~~~~~~~h~~~v~~~~~~~~~-~~l~s~s~dg~i~iw~ 280 (314)
++ .+.+..+++|..++..+.|+|.. ..+||++.||.|++|+
T Consensus 462 kt-~kl~~~lkah~~~ci~v~wHP~e~Skvat~~w~G~Ikiwd 503 (503)
T KOG0282|consen 462 KT-TKLVSKLKAHDQPCIGVDWHPVEPSKVATCGWDGLIKIWD 503 (503)
T ss_pred hh-hhhhhccccCCcceEEEEecCCCcceeEecccCceeEecC
Confidence 98 88999999999999999998754 4689999999999996
No 32
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=100.00 E-value=1.8e-32 Score=211.76 Aligned_cols=210 Identities=17% Similarity=0.303 Sum_probs=170.9
Q ss_pred CCCceeEEEEccCCCEEEEecCCCeEEEEeCCCCeEEEEEeccCCcccEEEEEEcccCCCCeEEEeecCCeEEEEeCCCC
Q 021291 17 HRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENG 96 (314)
Q Consensus 17 h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~ 96 (314)
-+.+|..+.|.|+|+.|++|+..|.+.+|+...-.....++.|. .+|.++.|++ ++.+++||+.+|.|++|+.+-.
T Consensus 95 vkc~V~~v~WtPeGRRLltgs~SGEFtLWNg~~fnFEtilQaHD--s~Vr~m~ws~--~g~wmiSgD~gG~iKyWqpnmn 170 (464)
T KOG0284|consen 95 VKCPVNVVRWTPEGRRLLTGSQSGEFTLWNGTSFNFETILQAHD--SPVRTMKWSH--NGTWMISGDKGGMIKYWQPNMN 170 (464)
T ss_pred cccceeeEEEcCCCceeEeecccccEEEecCceeeHHHHhhhhc--ccceeEEEcc--CCCEEEEcCCCceEEecccchh
Confidence 34578999999999999999999999999975544444557788 4599999999 9999999999999999998765
Q ss_pred CCCCCCeeeeecceeeEEEeeeeeccccccccCCCCcceeeccCCceeeecCCCCCCceeccCCCceEEEeecCcCeEEE
Q 021291 97 GLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQLSEVEI 176 (314)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~v 176 (314)
.... ....+...+. + ++|+|....++ +++.||+|+|
T Consensus 171 nVk~--~~ahh~eaIR-d---------------------------------------lafSpnDskF~--t~SdDg~iki 206 (464)
T KOG0284|consen 171 NVKI--IQAHHAEAIR-D---------------------------------------LAFSPNDSKFL--TCSDDGTIKI 206 (464)
T ss_pred hhHH--hhHhhhhhhh-e---------------------------------------eccCCCCceeE--EecCCCeEEE
Confidence 3211 1011111111 1 67888765544 6788999999
Q ss_pred EecCCCceeeeecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEeecCCcEEEEEccCCCCceEeeecCCcceE
Q 021291 177 WDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPVL 256 (314)
Q Consensus 177 wd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~h~~~v~ 256 (314)
||....+....+. ||.. .+.+++ |+|... +|++|+.|..|++||.++ +.++.++.+|...|.
T Consensus 207 Wdf~~~kee~vL~--------GHgw----dVksvd-WHP~kg----LiasgskDnlVKlWDprS-g~cl~tlh~HKntVl 268 (464)
T KOG0284|consen 207 WDFRMPKEERVLR--------GHGW----DVKSVD-WHPTKG----LIASGSKDNLVKLWDPRS-GSCLATLHGHKNTVL 268 (464)
T ss_pred EeccCCchhheec--------cCCC----Ccceec-cCCccc----eeEEccCCceeEeecCCC-cchhhhhhhccceEE
Confidence 9999888877777 7854 566676 999843 899999999999999999 999999999999999
Q ss_pred EEEEeCCCCeEEEecCCCcEEEEecCCCeeeEeeee
Q 021291 257 CLSIDESCNGGISGGADQKIVLYNLDHSTYVLFGIG 292 (314)
Q Consensus 257 ~~~~~~~~~~l~s~s~dg~i~iw~~~~~~~~~~~~~ 292 (314)
.+.|++++++|+|+|.|..++++|+++-+.++...+
T Consensus 269 ~~~f~~n~N~Llt~skD~~~kv~DiR~mkEl~~~r~ 304 (464)
T KOG0284|consen 269 AVKFNPNGNWLLTGSKDQSCKVFDIRTMKELFTYRG 304 (464)
T ss_pred EEEEcCCCCeeEEccCCceEEEEehhHhHHHHHhhc
Confidence 999999999999999999999999997777665444
No 33
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=100.00 E-value=2.5e-30 Score=189.70 Aligned_cols=246 Identities=19% Similarity=0.269 Sum_probs=186.0
Q ss_pred EecCCCCceeEEEEccCCCEEEEecCCCeEEEEeCCCCeEEEEEeccCCcccEEEEEEcccCCCCeEEEeecCCeEEEEe
Q 021291 13 VLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWD 92 (314)
Q Consensus 13 ~l~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd 92 (314)
.|+||+.+++.+.|+.+|.+|++++.|.+..||-..+|+.+-++.+|.++ |+|+.... +.+.+++|+.|.++++||
T Consensus 5 ~l~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~nGerlGty~GHtGa--vW~~Did~--~s~~liTGSAD~t~kLWD 80 (327)
T KOG0643|consen 5 LLQGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNGERLGTYDGHTGA--VWCCDIDW--DSKHLITGSADQTAKLWD 80 (327)
T ss_pred ccccCccccceEEecCCCcEEEEecCCCCceEEEecCCceeeeecCCCce--EEEEEecC--CcceeeeccccceeEEEE
Confidence 47899999999999999999999999999999999899999999999966 99999998 889999999999999999
Q ss_pred CCCCCCCCCCeeeeecc-eeeEEEeeeeeccccccc----cCCCCcceeeccCC-------ceeeecCCCCCC---ceec
Q 021291 93 IENGGLSSNPSLTIKTN-SYHFCKLSLVKEPYANAK----QANEPKDCYEREVG-------ETVDTDSLCDSK---DDVP 157 (314)
Q Consensus 93 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~-------~~~~~~~~~~~~---~~~~ 157 (314)
+++++++. ..+.. +...+.|+..+....... ...+...+++++.. ..........+. +-|.
T Consensus 81 v~tGk~la----~~k~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg 156 (327)
T KOG0643|consen 81 VETGKQLA----TWKTNSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWG 156 (327)
T ss_pred cCCCcEEE----EeecCCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCccceeeeeec
Confidence 99998643 33332 334444444443322211 12233444555422 112222222222 7899
Q ss_pred cCCCceEEEeecCcCeEEEEecCCCceeeeecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEeecCCcEEEEE
Q 021291 158 AEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWD 237 (314)
Q Consensus 158 ~~~~~~~~~~g~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd 237 (314)
|-++.++ +|..||.|..||++++.....-.. -| ...+..++ ++||.. ++++++.|.+-++||
T Consensus 157 ~l~~~ii--~Ghe~G~is~~da~~g~~~v~s~~-------~h----~~~Ind~q-~s~d~T----~FiT~s~Dttakl~D 218 (327)
T KOG0643|consen 157 PLGETII--AGHEDGSISIYDARTGKELVDSDE-------EH----SSKINDLQ-FSRDRT----YFITGSKDTTAKLVD 218 (327)
T ss_pred ccCCEEE--EecCCCcEEEEEcccCceeeechh-------hh----cccccccc-ccCCcc----eEEecccCccceeee
Confidence 9998765 688899999999999866544332 34 44778887 999844 999999999999999
Q ss_pred ccCCCC------------------------------------------------------ceEeeecCCcceEEEEEeCC
Q 021291 238 IRNPGI------------------------------------------------------PLTAMKVHLEPVLCLSIDES 263 (314)
Q Consensus 238 ~~~~~~------------------------------------------------------~~~~~~~h~~~v~~~~~~~~ 263 (314)
.++... .+..+++|=++|++|+|+|+
T Consensus 219 ~~tl~v~Kty~te~PvN~aaisP~~d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEigrvkGHFGPINsvAfhPd 298 (327)
T KOG0643|consen 219 VRTLEVLKTYTTERPVNTAAISPLLDHVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGRVKGHFGPINSVAFHPD 298 (327)
T ss_pred ccceeeEEEeeecccccceecccccceEEecCCceeeeeeeecccccchhhhHHHHHHHHHhccccccccCcceeEECCC
Confidence 875110 12235678999999999999
Q ss_pred CCeEEEecCCCcEEEEecCCC
Q 021291 264 CNGGISGGADQKIVLYNLDHS 284 (314)
Q Consensus 264 ~~~l~s~s~dg~i~iw~~~~~ 284 (314)
|+..++|+.||.||+.-++..
T Consensus 299 GksYsSGGEDG~VR~h~Fd~~ 319 (327)
T KOG0643|consen 299 GKSYSSGGEDGYVRLHHFDSN 319 (327)
T ss_pred CcccccCCCCceEEEEEeccc
Confidence 999999999999999876643
No 34
>PTZ00420 coronin; Provisional
Probab=99.98 E-value=1.7e-29 Score=214.04 Aligned_cols=216 Identities=19% Similarity=0.222 Sum_probs=159.1
Q ss_pred CceEEecCCCCceeEEEEccC-CCEEEEecCCCeEEEEeCCCCe--------EEEEEeccCCcccEEEEEEcccCCCCe-
Q 021291 9 DPVAVLRGHRASVTDVCFHQT-KPILFAGTTGGELRIWDTVQHR--------TVSSSWVHSAAHGIVSVATGPSIGLNK- 78 (314)
Q Consensus 9 ~~~~~l~~h~~~v~~~~~~~~-~~~l~s~~~dg~v~iwd~~~~~--------~~~~~~~~~~~~~v~~~~~~~~~~~~~- 78 (314)
.++..+.+|.+.|.+++|+|+ +++||+|+.||+|+|||+.++. .+..+.+|.. .|.+++|+| ++..
T Consensus 65 ~~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~--~V~sVaf~P--~g~~i 140 (568)
T PTZ00420 65 PPVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKK--KISIIDWNP--MNYYI 140 (568)
T ss_pred ceEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCC--cEEEEEECC--CCCeE
Confidence 467889999999999999996 7899999999999999997542 3446777874 499999999 7665
Q ss_pred EEEeecCCeEEEEeCCCCCCCCCCeeeeecceeeEEEeeeeeccccccccCCCCcceeeccCCceeeecCCCCCCceecc
Q 021291 79 VISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPA 158 (314)
Q Consensus 79 l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (314)
|++++.|++|+|||+++++... .+.......+ ++|+|
T Consensus 141 LaSgS~DgtIrIWDl~tg~~~~----~i~~~~~V~S---------------------------------------lswsp 177 (568)
T PTZ00420 141 MCSSGFDSFVNIWDIENEKRAF----QINMPKKLSS---------------------------------------LKWNI 177 (568)
T ss_pred EEEEeCCCeEEEEECCCCcEEE----EEecCCcEEE---------------------------------------EEECC
Confidence 5789999999999999875322 2221111111 56999
Q ss_pred CCCceEEEeecCcCeEEEEecCCCceeeeecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEeecCC----cEE
Q 021291 159 EGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDG----SIL 234 (314)
Q Consensus 159 ~~~~~~~~~g~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg----~i~ 234 (314)
+|..+ + +++.|+.|+|||+++++.+..+. +|.......+..+..|+++ +. +|++++.|+ .|+
T Consensus 178 dG~lL-a-t~s~D~~IrIwD~Rsg~~i~tl~--------gH~g~~~s~~v~~~~fs~d---~~-~IlTtG~d~~~~R~Vk 243 (568)
T PTZ00420 178 KGNLL-S-GTCVGKHMHIIDPRKQEIASSFH--------IHDGGKNTKNIWIDGLGGD---DN-YILSTGFSKNNMREMK 243 (568)
T ss_pred CCCEE-E-EEecCCEEEEEECCCCcEEEEEe--------cccCCceeEEEEeeeEcCC---CC-EEEEEEcCCCCccEEE
Confidence 98744 3 45568999999999999988887 7765433333322236676 44 677766664 799
Q ss_pred EEEccCCCCceEeeecC--CcceEEEEEeCCCCeEEEecCCCcEEEEecCCCe
Q 021291 235 VWDIRNPGIPLTAMKVH--LEPVLCLSIDESCNGGISGGADQKIVLYNLDHST 285 (314)
Q Consensus 235 vwd~~~~~~~~~~~~~h--~~~v~~~~~~~~~~~l~s~s~dg~i~iw~~~~~~ 285 (314)
|||+++...++..+..+ .+.+......+++.++++|+.|+.|++|++..+.
T Consensus 244 LWDlr~~~~pl~~~~ld~~~~~L~p~~D~~tg~l~lsGkGD~tIr~~e~~~~~ 296 (568)
T PTZ00420 244 LWDLKNTTSALVTMSIDNASAPLIPHYDESTGLIYLIGKGDGNCRYYQHSLGS 296 (568)
T ss_pred EEECCCCCCceEEEEecCCccceEEeeeCCCCCEEEEEECCCeEEEEEccCCc
Confidence 99999767777665433 2333333335668899999999999999998774
No 35
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.98 E-value=2.3e-30 Score=218.94 Aligned_cols=216 Identities=25% Similarity=0.376 Sum_probs=176.5
Q ss_pred eEEecCC-CCceeEEEEccCCCEEEEecCCCeEEEEeCCCCe--EEEEEeccCCcccEEEEEEcccCCCCeEEEeecCCe
Q 021291 11 VAVLRGH-RASVTDVCFHQTKPILFAGTTGGELRIWDTVQHR--TVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGT 87 (314)
Q Consensus 11 ~~~l~~h-~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~ 87 (314)
...+.+| ...|.++.|+++|+.|++++.|+.+++|+..+.+ ....+.+|. ..|.+++|+| ++.++++++.|++
T Consensus 151 ~~~~~~~~~~sv~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~l~~h~--~~v~~~~fs~--d~~~l~s~s~D~t 226 (456)
T KOG0266|consen 151 EQTLAGHECPSVTCVDFSPDGRALAAASSDGLIRIWKLEGIKSNLLRELSGHT--RGVSDVAFSP--DGSYLLSGSDDKT 226 (456)
T ss_pred eeeecccccCceEEEEEcCCCCeEEEccCCCcEEEeecccccchhhccccccc--cceeeeEECC--CCcEEEEecCCce
Confidence 5556555 7899999999999999999999999999997777 677777788 4499999999 9999999999999
Q ss_pred EEEEeCCCC-CCCCCCeeeeecceeeEEEeeeeeccccccccCCCCcceeeccCCceeeecCCCCCCceeccCCCceEEE
Q 021291 88 VKCWDIENG-GLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAV 166 (314)
Q Consensus 88 v~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (314)
|+|||+... .+.+ .+..+..... + ++|+|++ .+++
T Consensus 227 iriwd~~~~~~~~~----~l~gH~~~v~--~------------------------------------~~f~p~g-~~i~- 262 (456)
T KOG0266|consen 227 LRIWDLKDDGRNLK----TLKGHSTYVT--S------------------------------------VAFSPDG-NLLV- 262 (456)
T ss_pred EEEeeccCCCeEEE----EecCCCCceE--E------------------------------------EEecCCC-CEEE-
Confidence 999999433 3322 3332221111 0 5689999 4554
Q ss_pred eecCcCeEEEEecCCCceeeeecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEeecCCcEEEEEccCCCC--c
Q 021291 167 AGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGI--P 244 (314)
Q Consensus 167 ~g~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~--~ 244 (314)
+|+.|++|+|||++++++...+. +|.. .+.++. |+++ +. +|++++.|+.|++||+.+ +. +
T Consensus 263 Sgs~D~tvriWd~~~~~~~~~l~--------~hs~----~is~~~-f~~d---~~-~l~s~s~d~~i~vwd~~~-~~~~~ 324 (456)
T KOG0266|consen 263 SGSDDGTVRIWDVRTGECVRKLK--------GHSD----GISGLA-FSPD---GN-LLVSASYDGTIRVWDLET-GSKLC 324 (456)
T ss_pred EecCCCcEEEEeccCCeEEEeee--------ccCC----ceEEEE-ECCC---CC-EEEEcCCCccEEEEECCC-Cceee
Confidence 78889999999999999999999 7744 777777 9998 55 899999999999999998 66 5
Q ss_pred eEeeecCCcc--eEEEEEeCCCCeEEEecCCCcEEEEecCCCeeeEeeee
Q 021291 245 LTAMKVHLEP--VLCLSIDESCNGGISGGADQKIVLYNLDHSTYVLFGIG 292 (314)
Q Consensus 245 ~~~~~~h~~~--v~~~~~~~~~~~l~s~s~dg~i~iw~~~~~~~~~~~~~ 292 (314)
+..+.++... ++.+.|+|++.+|++++.|+.+++||+..++.+....+
T Consensus 325 ~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~~~~~~~~~ 374 (456)
T KOG0266|consen 325 LKLLSGAENSAPVTSVQFSPNGKYLLSASLDRTLKLWDLRSGKSVGTYTG 374 (456)
T ss_pred eecccCCCCCCceeEEEECCCCcEEEEecCCCeEEEEEccCCcceeeecc
Confidence 6777776655 99999999999999999999999999998877665433
No 36
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.98 E-value=9e-30 Score=210.94 Aligned_cols=232 Identities=22% Similarity=0.298 Sum_probs=186.8
Q ss_pred CceEEecCCCCceeEEEEccCCCEEEEecCC-CeEEEEeCCCCeEEEEEeccCCcccEEEEEEcccCCCCeEEEeecCCe
Q 021291 9 DPVAVLRGHRASVTDVCFHQTKPILFAGTTG-GELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGT 87 (314)
Q Consensus 9 ~~~~~l~~h~~~v~~~~~~~~~~~l~s~~~d-g~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~ 87 (314)
.+++.|.--..+|..++|+..|..||.|+.. |++.||+......+...++|... +.+++++| ||+++++|+.||.
T Consensus 298 ~lih~LSis~~~I~t~~~N~tGDWiA~g~~klgQLlVweWqsEsYVlKQQgH~~~--i~~l~YSp--Dgq~iaTG~eDgK 373 (893)
T KOG0291|consen 298 NLIHSLSISDQKILTVSFNSTGDWIAFGCSKLGQLLVWEWQSESYVLKQQGHSDR--ITSLAYSP--DGQLIATGAEDGK 373 (893)
T ss_pred eEEEEeecccceeeEEEecccCCEEEEcCCccceEEEEEeeccceeeeccccccc--eeeEEECC--CCcEEEeccCCCc
Confidence 5677777777899999999999999988764 89999999988888888899854 99999999 9999999999999
Q ss_pred EEEEeCCCCCCCCCCeeeeecceeeEEEeeeeeccccccccCCCCcceeeccCCceeeecCCCCCCceeccCCCceEEEe
Q 021291 88 VKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVA 167 (314)
Q Consensus 88 v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (314)
|+|||...+-|.. ++..+...... +.|+..|+.++ +
T Consensus 374 VKvWn~~SgfC~v----TFteHts~Vt~--------------------------------------v~f~~~g~~ll--s 409 (893)
T KOG0291|consen 374 VKVWNTQSGFCFV----TFTEHTSGVTA--------------------------------------VQFTARGNVLL--S 409 (893)
T ss_pred EEEEeccCceEEE----EeccCCCceEE--------------------------------------EEEEecCCEEE--E
Confidence 9999999987744 44333222222 44667776444 6
Q ss_pred ecCcCeEEEEecCCCceeeeecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEeecCC-cEEEEEccCCCCceE
Q 021291 168 GEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDG-SILVWDIRNPGIPLT 246 (314)
Q Consensus 168 g~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg-~i~vwd~~~~~~~~~ 246 (314)
.+.||+|+.||+...+..++|..+ ......+++ -.|. |. ++++|+.|. .|.||++++ ++.+.
T Consensus 410 sSLDGtVRAwDlkRYrNfRTft~P-----------~p~Qfscva-vD~s---Ge-lV~AG~~d~F~IfvWS~qT-GqllD 472 (893)
T KOG0291|consen 410 SSLDGTVRAWDLKRYRNFRTFTSP-----------EPIQFSCVA-VDPS---GE-LVCAGAQDSFEIFVWSVQT-GQLLD 472 (893)
T ss_pred eecCCeEEeeeecccceeeeecCC-----------CceeeeEEE-EcCC---CC-EEEeeccceEEEEEEEeec-Ceeee
Confidence 788999999999999988888732 222344444 6665 66 777787775 599999999 99999
Q ss_pred eeecCCcceEEEEEeCCCCeEEEecCCCcEEEEecCCCeeeE-------eeeeeeecCCCceecee
Q 021291 247 AMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTYVL-------FGIGFVCDQEGNKFGTT 305 (314)
Q Consensus 247 ~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~iw~~~~~~~~~-------~~~~~~~~~~~~~~~~~ 305 (314)
.+.||.+||.+++|+|.+..|+|+|.|.+||+||+-...... ...++++.|+|+.++..
T Consensus 473 iLsGHEgPVs~l~f~~~~~~LaS~SWDkTVRiW~if~s~~~vEtl~i~sdvl~vsfrPdG~elaVa 538 (893)
T KOG0291|consen 473 ILSGHEGPVSGLSFSPDGSLLASGSWDKTVRIWDIFSSSGTVETLEIRSDVLAVSFRPDGKELAVA 538 (893)
T ss_pred hhcCCCCcceeeEEccccCeEEeccccceEEEEEeeccCceeeeEeeccceeEEEEcCCCCeEEEE
Confidence 999999999999999999999999999999999986552211 25778899999887654
No 37
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=99.97 E-value=1.1e-29 Score=199.84 Aligned_cols=220 Identities=15% Similarity=0.260 Sum_probs=175.4
Q ss_pred CCCCCceEEecCCCCceeEEEEccCCCEEEEecCCCeEEEEeCCCCeEEE------------------------------
Q 021291 5 PPPPDPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVS------------------------------ 54 (314)
Q Consensus 5 ~~~~~~~~~l~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~------------------------------ 54 (314)
..++..+.+|..|+++|.++.|+.+|+||++++.||++.+||..++...+
T Consensus 263 ~~~G~l~~tl~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~g~~~q~f~~~s~~~lDVdW~~~~~F~ts~td~~i~ 342 (524)
T KOG0273|consen 263 NKDGNLISTLGQHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHTGTVKQQFEFHSAPALDVDWQSNDEFATSSTDGCIH 342 (524)
T ss_pred ecCchhhhhhhccCCceEEEEEcCCCCEEEeccCCccEEEEeccCceEEEeeeeccCCccceEEecCceEeecCCCceEE
Confidence 35667888899999999999999999999999999999999987664332
Q ss_pred -----------EEeccCCcccEEEEEEcccCCCCeEEEeecCCeEEEEeCCCCCCCCCCeeeeecceeeEEEeeeeeccc
Q 021291 55 -----------SSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPY 123 (314)
Q Consensus 55 -----------~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 123 (314)
++.+|.+ .|.+|.|+| .+.+|+++|.|++++||......+.. -+..+........+++.+.
T Consensus 343 V~kv~~~~P~~t~~GH~g--~V~alk~n~--tg~LLaS~SdD~TlkiWs~~~~~~~~--~l~~Hskei~t~~wsp~g~-- 414 (524)
T KOG0273|consen 343 VCKVGEDRPVKTFIGHHG--EVNALKWNP--TGSLLASCSDDGTLKIWSMGQSNSVH--DLQAHSKEIYTIKWSPTGP-- 414 (524)
T ss_pred EEEecCCCcceeeecccC--ceEEEEECC--CCceEEEecCCCeeEeeecCCCcchh--hhhhhccceeeEeecCCCC--
Confidence 3346774 499999999 89999999999999999988776544 2222222222232332221
Q ss_pred cccccCCCCcceeeccCCceeeecCCCCCCceeccCCCceEEEeecCcCeEEEEecCCCceeeeecccccCCCCCcCCCC
Q 021291 124 ANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKG 203 (314)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~h~~~~ 203 (314)
+.++|..+..++ +++.|++|++||+..+.++..|. .|
T Consensus 415 ------------------------------v~~n~~~~~~l~-sas~dstV~lwdv~~gv~i~~f~--------kH---- 451 (524)
T KOG0273|consen 415 ------------------------------VTSNPNMNLMLA-SASFDSTVKLWDVESGVPIHTLM--------KH---- 451 (524)
T ss_pred ------------------------------ccCCCcCCceEE-EeecCCeEEEEEccCCceeEeec--------cC----
Confidence 224444444454 56669999999999999999997 56
Q ss_pred CceeeeEEEecCCCCCCceEEEEeecCCcEEEEEccCCCCceEeeecCCcceEEEEEeCCCCeEEEecCCCcEEEEecC
Q 021291 204 RGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLD 282 (314)
Q Consensus 204 ~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~iw~~~ 282 (314)
..++++++ |+|+ |+ ++++|+.||.|.+|++++ ++.++.+.+ .+.|..|+|+.+|.+|..+-.|+.+++-|++
T Consensus 452 ~~pVysva-fS~~---g~-ylAsGs~dg~V~iws~~~-~~l~~s~~~-~~~Ifel~Wn~~G~kl~~~~sd~~vcvldlr 523 (524)
T KOG0273|consen 452 QEPVYSVA-FSPN---GR-YLASGSLDGCVHIWSTKT-GKLVKSYQG-TGGIFELCWNAAGDKLGACASDGSVCVLDLR 523 (524)
T ss_pred CCceEEEE-ecCC---Cc-EEEecCCCCeeEeccccc-hheeEeecC-CCeEEEEEEcCCCCEEEEEecCCCceEEEec
Confidence 55889998 9998 66 999999999999999998 888888876 5679999999999999999999999999875
No 38
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=99.97 E-value=2.6e-29 Score=191.82 Aligned_cols=248 Identities=14% Similarity=0.199 Sum_probs=182.2
Q ss_pred CCceEEecCCCCceeEEEEccCCCEEEEecCCCeEEEEeCCCCeEEEEEeccCCcccEEEEEEcccCCCCeEEEeecCCe
Q 021291 8 PDPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGT 87 (314)
Q Consensus 8 ~~~~~~l~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~ 87 (314)
++....+.||++.|+|+.|+.||.+||||..+|.|+||+..++.....+.... +.|.-|.|+| .+..|+.|+.||.
T Consensus 96 ge~~~eltgHKDSVt~~~FshdgtlLATGdmsG~v~v~~~stg~~~~~~~~e~--~dieWl~WHp--~a~illAG~~DGs 171 (399)
T KOG0296|consen 96 GEFAGELTGHKDSVTCCSFSHDGTLLATGDMSGKVLVFKVSTGGEQWKLDQEV--EDIEWLKWHP--RAHILLAGSTDGS 171 (399)
T ss_pred CcceeEecCCCCceEEEEEccCceEEEecCCCccEEEEEcccCceEEEeeccc--CceEEEEecc--cccEEEeecCCCc
Confidence 35778899999999999999999999999999999999999998888886444 3499999999 8899999999999
Q ss_pred EEEEeCCCCCCCCCCeeeeecceeeEEEeeeeeccccccccCCCCcceeeccCCceeee---------------------
Q 021291 88 VKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDT--------------------- 146 (314)
Q Consensus 88 v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------- 146 (314)
|.+|.+.++...+ ++..+..+...-.+.+.+.. ....+..+....|+......+..
T Consensus 172 vWmw~ip~~~~~k--v~~Gh~~~ct~G~f~pdGKr-~~tgy~dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~ 248 (399)
T KOG0296|consen 172 VWMWQIPSQALCK--VMSGHNSPCTCGEFIPDGKR-ILTGYDDGTIIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTL 248 (399)
T ss_pred EEEEECCCcceee--EecCCCCCcccccccCCCce-EEEEecCceEEEEecCCCceeEEecccccCcCCcccccccccee
Confidence 9999998854433 33333333333333333211 11222233333333332221111
Q ss_pred ----------------------cC-------CCCCC----ceeccCC-CceEEEeecCcCeEEEEecCCCceeeeecccc
Q 021291 147 ----------------------DS-------LCDSK----DDVPAEG-PKYMAVAGEQLSEVEIWDLNTAERCTRLHQNS 192 (314)
Q Consensus 147 ----------------------~~-------~~~~~----~~~~~~~-~~~~~~~g~~d~~i~vwd~~~~~~~~~~~~~~ 192 (314)
.. ..+.. +.+.|.. ..-++++|+.||+|.|||+...+....+.
T Consensus 249 ~~g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~~~R~~c~--- 325 (399)
T KOG0296|consen 249 TKGNSEGVACGVNNGSGKVVNCNNGTVPELKPSQEELDESVESIPSSSKLPLAACGSVDGTIAIYDLAASTLRHICE--- 325 (399)
T ss_pred EeccCCccEEEEccccceEEEecCCCCccccccchhhhhhhhhcccccccchhhcccccceEEEEecccchhheecc---
Confidence 10 01111 2222221 23366689999999999999877665555
Q ss_pred cCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEeecCCcEEEEEccCCCCceEeeecCCcceEEEEEeCCCCeEEEecC
Q 021291 193 CGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGA 272 (314)
Q Consensus 193 ~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~ 272 (314)
| ...++.+. |-++ . +|++++.||.|+.||.|+ ++++..+.+|...|.+++++|+.++++|+|.
T Consensus 326 ------h----e~~V~~l~-w~~t-~----~l~t~c~~g~v~~wDaRt-G~l~~~y~GH~~~Il~f~ls~~~~~vvT~s~ 388 (399)
T KOG0296|consen 326 ------H----EDGVTKLK-WLNT-D----YLLTACANGKVRQWDART-GQLKFTYTGHQMGILDFALSPQKRLVVTVSD 388 (399)
T ss_pred ------C----CCceEEEE-EcCc-c----hheeeccCceEEeeeccc-cceEEEEecCchheeEEEEcCCCcEEEEecC
Confidence 3 44688887 9883 2 899999999999999999 9999999999999999999999999999999
Q ss_pred CCcEEEEecC
Q 021291 273 DQKIVLYNLD 282 (314)
Q Consensus 273 dg~i~iw~~~ 282 (314)
|++.+||++.
T Consensus 389 D~~a~VF~v~ 398 (399)
T KOG0296|consen 389 DNTALVFEVP 398 (399)
T ss_pred CCeEEEEecC
Confidence 9999999875
No 39
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=4.6e-30 Score=216.20 Aligned_cols=238 Identities=15% Similarity=0.232 Sum_probs=184.8
Q ss_pred ceEEecCCCCceeEEEEccCCCEEEEecCCCeEEEEeCCCCeEEEEEeccCCcccEEEEEEcccCCCCeEEEeecCCeEE
Q 021291 10 PVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVK 89 (314)
Q Consensus 10 ~~~~l~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~v~ 89 (314)
++..|.+|.++|..++|+|++.++++|+.|-.|+||+..+.+++.++.+|- +.|..+.|++ .-.+++|+|+|.+|+
T Consensus 43 li~rFdeHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk~rrclftL~GHl--DYVRt~~FHh--eyPWIlSASDDQTIr 118 (1202)
T KOG0292|consen 43 LIDRFDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYKTRRCLFTLLGHL--DYVRTVFFHH--EYPWILSASDDQTIR 118 (1202)
T ss_pred HHhhhhccCCccceeeecCCCCeEEecCCccEEEEEecccceehhhhcccc--ceeEEeeccC--CCceEEEccCCCeEE
Confidence 566788999999999999999999999999999999999999999999999 5599999999 889999999999999
Q ss_pred EEeCCCCCCCCCCeeeeecceeeEEEeeeeeccccccccCCCCcceeeccCCceeeecCCCCCCceeccCCCceEEEeec
Q 021291 90 CWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGE 169 (314)
Q Consensus 90 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 169 (314)
||+..+++++. +++.+.+..-+ ..|+|..+ ++++++
T Consensus 119 IWNwqsr~~ia--vltGHnHYVMc----------------------------------------AqFhptED--lIVSaS 154 (1202)
T KOG0292|consen 119 IWNWQSRKCIA--VLTGHNHYVMC----------------------------------------AQFHPTED--LIVSAS 154 (1202)
T ss_pred EEeccCCceEE--EEecCceEEEe----------------------------------------eccCCccc--eEEEec
Confidence 99999998866 44444333222 34777665 344899
Q ss_pred CcCeEEEEecCCCceeeeecc--cc-------------------cCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEee
Q 021291 170 QLSEVEIWDLNTAERCTRLHQ--NS-------------------CGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGY 228 (314)
Q Consensus 170 ~d~~i~vwd~~~~~~~~~~~~--~~-------------------~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~ 228 (314)
.|.+|++||+...+....-+. +. .-..-|| ...+..++ |+|.-+ +|++|+
T Consensus 155 LDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGH----DRGVNwaA-fhpTlp----liVSG~ 225 (1202)
T KOG0292|consen 155 LDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGH----DRGVNWAA-FHPTLP----LIVSGA 225 (1202)
T ss_pred ccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeeccc----ccccceEE-ecCCcc----eEEecC
Confidence 999999999864322111110 00 0000144 22344454 999855 999999
Q ss_pred cCCcEEEEEccCC-CCceEeeecCCcceEEEEEeCCCCeEEEecCCCcEEEEecCCCeeeEee-------eeeeecCCCc
Q 021291 229 EDGSILVWDIRNP-GIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTYVLFG-------IGFVCDQEGN 300 (314)
Q Consensus 229 ~dg~i~vwd~~~~-~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~iw~~~~~~~~~~~-------~~~~~~~~~~ 300 (314)
.|..|++|.+... .-.+.+..+|...|.++-|+|...+++|.|.|++|+|||++..+.+.++ .-++.+|...
T Consensus 226 DDRqVKlWrmnetKaWEvDtcrgH~nnVssvlfhp~q~lIlSnsEDksirVwDm~kRt~v~tfrrendRFW~laahP~lN 305 (1202)
T KOG0292|consen 226 DDRQVKLWRMNETKAWEVDTCRGHYNNVSSVLFHPHQDLILSNSEDKSIRVWDMTKRTSVQTFRRENDRFWILAAHPELN 305 (1202)
T ss_pred CcceeeEEEeccccceeehhhhcccCCcceEEecCccceeEecCCCccEEEEecccccceeeeeccCCeEEEEEecCCcc
Confidence 9999999998752 2245667899999999999998889999999999999999998887753 3356677776
Q ss_pred eece
Q 021291 301 KFGT 304 (314)
Q Consensus 301 ~~~~ 304 (314)
.|+.
T Consensus 306 LfAA 309 (1202)
T KOG0292|consen 306 LFAA 309 (1202)
T ss_pred eeee
Confidence 6664
No 40
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=99.97 E-value=9.5e-30 Score=195.14 Aligned_cols=271 Identities=17% Similarity=0.193 Sum_probs=195.7
Q ss_pred CCCCceEEecCCCCceeEEEEccCCCEEEEecCCCeEEEEeCCCCeEEEEEeccCCcccEEEEEEcccC-CCCeEEEeec
Q 021291 6 PPPDPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSI-GLNKVISQGR 84 (314)
Q Consensus 6 ~~~~~~~~l~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~l~s~~~ 84 (314)
+|++++..+. |.+.|.++... ++.+++|++||.+++||. .|++...+.+|.++ |.+++|.-.+ ....|++++.
T Consensus 94 ~aP~pl~~~~-hdDWVSsv~~~--~~~IltgsYDg~~riWd~-~Gk~~~~~~Ght~~--ik~v~~v~~n~~~~~fvsas~ 167 (423)
T KOG0313|consen 94 TAPKPLQCFL-HDDWVSSVKGA--SKWILTGSYDGTSRIWDL-KGKSIKTIVGHTGP--IKSVAWVIKNSSSCLFVSASM 167 (423)
T ss_pred CCCCcccccc-chhhhhhhccc--CceEEEeecCCeeEEEec-CCceEEEEecCCcc--eeeeEEEecCCccceEEEecC
Confidence 4457777775 99999999987 678999999999999995 58999999999955 9988886521 2235999999
Q ss_pred CCeEEEEeCCCCCCCCCCeeeeecceeeEEEeeeeeccc-cccccCCCCcceeecc------------------------
Q 021291 85 DGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPY-ANAKQANEPKDCYERE------------------------ 139 (314)
Q Consensus 85 dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~------------------------ 139 (314)
|.++++|.++.++...+.......+......++...... ...........+|+..
T Consensus 168 Dqtl~Lw~~~~~~~~~~~~~~~~GHk~~V~sVsv~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~ 247 (423)
T KOG0313|consen 168 DQTLRLWKWNVGENKVKALKVCRGHKRSVDSVSVDSSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEG 247 (423)
T ss_pred CceEEEEEecCchhhhhHHhHhcccccceeEEEecCCCCeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcc
Confidence 999999999887654432323223333333333222221 1222223344444411
Q ss_pred CCceeeecCCCCCC----ceeccCCCceEEEeecCcCeEEEEecCCCceeeeecccccCCCCCcCCCCCceeeeEEEecC
Q 021291 140 VGETVDTDSLCDSK----DDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLP 215 (314)
Q Consensus 140 ~~~~~~~~~~~~~~----~~~~~~~~~~~~~~g~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p 215 (314)
..+.+...+.+|.+ +.|++.+ .+.+++.|.+|+.||+.++..+.++.. .-...++. ++|
T Consensus 248 ~~r~P~vtl~GHt~~Vs~V~w~d~~---v~yS~SwDHTIk~WDletg~~~~~~~~-------------~ksl~~i~-~~~ 310 (423)
T KOG0313|consen 248 GTRTPLVTLEGHTEPVSSVVWSDAT---VIYSVSWDHTIKVWDLETGGLKSTLTT-------------NKSLNCIS-YSP 310 (423)
T ss_pred cccCceEEecccccceeeEEEcCCC---ceEeecccceEEEEEeecccceeeeec-------------CcceeEee-ccc
Confidence 01234445667777 7787743 333889999999999999998887762 33677777 998
Q ss_pred CCCCCceEEEEeecCCcEEEEEccCCC--CceEeeecCCcceEEEEEeCCCC-eEEEecCCCcEEEEecCCCe-eeEeee
Q 021291 216 SKSQGFVNVLAGYEDGSILVWDIRNPG--IPLTAMKVHLEPVLCLSIDESCN-GGISGGADQKIVLYNLDHST-YVLFGI 291 (314)
Q Consensus 216 ~~~~g~~~l~~g~~dg~i~vwd~~~~~--~~~~~~~~h~~~v~~~~~~~~~~-~l~s~s~dg~i~iw~~~~~~-~~~~~~ 291 (314)
.. . +|++|+.|..|++||.+++. .+.+++.+|...|.++.|+|... .|++||.|+++++||+++.+ .++.+.
T Consensus 311 ~~---~-Ll~~gssdr~irl~DPR~~~gs~v~~s~~gH~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k~plydI~ 386 (423)
T KOG0313|consen 311 LS---K-LLASGSSDRHIRLWDPRTGDGSVVSQSLIGHKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTKAPLYDIA 386 (423)
T ss_pred cc---c-eeeecCCCCceeecCCCCCCCceeEEeeecchhhhhheecCCCCceEEEEEecCCeEEEEEeccCCCcceeec
Confidence 63 3 89999999999999999743 34577889999999999998654 57999999999999999998 788776
Q ss_pred eeeecCCCceeceeec
Q 021291 292 GFVCDQEGNKFGTTWH 307 (314)
Q Consensus 292 ~~~~~~~~~~~~~~w~ 307 (314)
++ +.+.|...|.
T Consensus 387 ~h----~DKvl~vdW~ 398 (423)
T KOG0313|consen 387 GH----NDKVLSVDWN 398 (423)
T ss_pred cC----CceEEEEecc
Confidence 64 4555555553
No 41
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=1.9e-29 Score=181.95 Aligned_cols=250 Identities=15% Similarity=0.203 Sum_probs=196.5
Q ss_pred CCCCCCceEEecCCCCceeEEEEccCCCEEEEecCCCeEEEEeCCCCeEEEEEeccCCcccEEEEEEcccCCCCeEEEee
Q 021291 4 RPPPPDPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQG 83 (314)
Q Consensus 4 ~~~~~~~~~~l~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~ 83 (314)
.|..+.+++++.||..+|..++.+.|+..+++|+.|..|.+||+.+|+..+.+++|... |..++|+. +...+++|+
T Consensus 45 Np~rg~liktYsghG~EVlD~~~s~Dnskf~s~GgDk~v~vwDV~TGkv~Rr~rgH~aq--VNtV~fNe--esSVv~Sgs 120 (307)
T KOG0316|consen 45 NPLRGALIKTYSGHGHEVLDAALSSDNSKFASCGGDKAVQVWDVNTGKVDRRFRGHLAQ--VNTVRFNE--ESSVVASGS 120 (307)
T ss_pred cccccceeeeecCCCceeeeccccccccccccCCCCceEEEEEcccCeeeeecccccce--eeEEEecC--cceEEEecc
Confidence 36777899999999999999999999999999999999999999999999999999955 99999999 889999999
Q ss_pred cCCeEEEEeCCCCCCCCCCeeeeecceeeEEEeeeeeccccccccCCCCcceeeccCCceeeecCCCCCC--ceeccCCC
Q 021291 84 RDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSK--DDVPAEGP 161 (314)
Q Consensus 84 ~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~ 161 (314)
.|.++++||.++... +|+..+.........+.+.. .........+..+.++++.+...... .+|.- ++|+++++
T Consensus 121 fD~s~r~wDCRS~s~--ePiQildea~D~V~Si~v~~-heIvaGS~DGtvRtydiR~G~l~sDy-~g~pit~vs~s~d~n 196 (307)
T KOG0316|consen 121 FDSSVRLWDCRSRSF--EPIQILDEAKDGVSSIDVAE-HEIVAGSVDGTVRTYDIRKGTLSSDY-FGHPITSVSFSKDGN 196 (307)
T ss_pred ccceeEEEEcccCCC--CccchhhhhcCceeEEEecc-cEEEeeccCCcEEEEEeecceeehhh-cCCcceeEEecCCCC
Confidence 999999999998765 33444444433333333332 23334555677788888877654433 33433 99999998
Q ss_pred ceEEEeecCcCeEEEEecCCCceeeeecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEeecCCcEEEEEccCC
Q 021291 162 KYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNP 241 (314)
Q Consensus 162 ~~~~~~g~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~ 241 (314)
..+ .++.|+++++.|-.+++.+..++ ||.... .-.... +... .. .+++|++||.|++||+-.
T Consensus 197 c~L--a~~l~stlrLlDk~tGklL~sYk--------Ghkn~e--ykldc~-l~qs---dt-hV~sgSEDG~Vy~wdLvd- 258 (307)
T KOG0316|consen 197 CSL--ASSLDSTLRLLDKETGKLLKSYK--------GHKNME--YKLDCC-LNQS---DT-HVFSGSEDGKVYFWDLVD- 258 (307)
T ss_pred EEE--EeeccceeeecccchhHHHHHhc--------ccccce--eeeeee-eccc---ce-eEEeccCCceEEEEEecc-
Confidence 777 47779999999999999999999 885522 222222 5443 22 899999999999999998
Q ss_pred CCceEeeecCCcc-eEEEEEeCCCCeEEEecCCCcEEEEe
Q 021291 242 GIPLTAMKVHLEP-VLCLSIDESCNGGISGGADQKIVLYN 280 (314)
Q Consensus 242 ~~~~~~~~~h~~~-v~~~~~~~~~~~l~s~s~dg~i~iw~ 280 (314)
...+..+..+... |.+++++|.-..|+++.. +.+.+|.
T Consensus 259 ~~~~sk~~~~~~v~v~dl~~hp~~~~f~~A~~-~~~~~~~ 297 (307)
T KOG0316|consen 259 ETQISKLSVVSTVIVTDLSCHPTMDDFITATG-HGDLFWY 297 (307)
T ss_pred ceeeeeeccCCceeEEeeecccCccceeEecC-Cceecee
Confidence 7888888888877 899999998877887754 4466664
No 42
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=99.97 E-value=8.3e-29 Score=182.06 Aligned_cols=211 Identities=22% Similarity=0.256 Sum_probs=165.6
Q ss_pred CceEEecCCCCceeEEEEccC-CCEEEEecCCCeEEEEeCCCC---eEEEEE-eccCCcccEEEEEEcccCCCCeEEEee
Q 021291 9 DPVAVLRGHRASVTDVCFHQT-KPILFAGTTGGELRIWDTVQH---RTVSSS-WVHSAAHGIVSVATGPSIGLNKVISQG 83 (314)
Q Consensus 9 ~~~~~l~~h~~~v~~~~~~~~-~~~l~s~~~dg~v~iwd~~~~---~~~~~~-~~~~~~~~v~~~~~~~~~~~~~l~s~~ 83 (314)
..++.+++|++.|..++|+|- |..||||+.|+.|+||+...+ .+...+ .+|+ ..|.+++|+| .|++|++||
T Consensus 5 ~~~~~~~gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hk--rsVRsvAwsp--~g~~La~aS 80 (312)
T KOG0645|consen 5 ILEQKLSGHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHK--RSVRSVAWSP--HGRYLASAS 80 (312)
T ss_pred eeEEeecCCCCcEEEEEeccCCceEEEeecCCceEEEEecCCCCcEEEEEeccccch--heeeeeeecC--CCcEEEEee
Confidence 457889999999999999996 889999999999999998743 344334 3466 5599999999 999999999
Q ss_pred cCCeEEEEeCCCCCCCCCCeeeeecceeeEEEeeeeeccccccccCCCCcceeeccCCceeeecCCCCCCceeccCCCce
Q 021291 84 RDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKY 163 (314)
Q Consensus 84 ~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (314)
.|.++.||.-..++......++.+...... ++|+++|.++
T Consensus 81 FD~t~~Iw~k~~~efecv~~lEGHEnEVK~----------------------------------------Vaws~sG~~L 120 (312)
T KOG0645|consen 81 FDATVVIWKKEDGEFECVATLEGHENEVKC----------------------------------------VAWSASGNYL 120 (312)
T ss_pred ccceEEEeecCCCceeEEeeeeccccceeE----------------------------------------EEEcCCCCEE
Confidence 999999998876643221112222222111 6799999744
Q ss_pred EEEeecCcCeEEEEecCCC---ceeeeecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEeecCCcEEEEEccC
Q 021291 164 MAVAGEQLSEVEIWDLNTA---ERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRN 240 (314)
Q Consensus 164 ~~~~g~~d~~i~vwd~~~~---~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~ 240 (314)
| +++.|+.|-||.+... ++...+. .|...++. +. |+|.+. +|++++.|.+|++|+-..
T Consensus 121 -A-TCSRDKSVWiWe~deddEfec~aVL~--------~HtqDVK~----V~-WHPt~d----lL~S~SYDnTIk~~~~~~ 181 (312)
T KOG0645|consen 121 -A-TCSRDKSVWIWEIDEDDEFECIAVLQ--------EHTQDVKH----VI-WHPTED----LLFSCSYDNTIKVYRDED 181 (312)
T ss_pred -E-EeeCCCeEEEEEecCCCcEEEEeeec--------cccccccE----EE-EcCCcc----eeEEeccCCeEEEEeecC
Confidence 3 7888999999998744 3555666 67665444 44 999633 999999999999998762
Q ss_pred --CCCceEeeecCCcceEEEEEeCCCCeEEEecCCCcEEEEecC
Q 021291 241 --PGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLD 282 (314)
Q Consensus 241 --~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~iw~~~ 282 (314)
.-.+++++.+|...|++++|++.|..|++++.|++++||...
T Consensus 182 dddW~c~~tl~g~~~TVW~~~F~~~G~rl~s~sdD~tv~Iw~~~ 225 (312)
T KOG0645|consen 182 DDDWECVQTLDGHENTVWSLAFDNIGSRLVSCSDDGTVSIWRLY 225 (312)
T ss_pred CCCeeEEEEecCccceEEEEEecCCCceEEEecCCcceEeeeec
Confidence 246889999999999999999999999999999999999843
No 43
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.97 E-value=5.6e-31 Score=200.83 Aligned_cols=244 Identities=22% Similarity=0.348 Sum_probs=192.4
Q ss_pred CceEEecCCCCceeEEEEccCC-CEEEEecCCCeEEEEeCCCCeEEEEEeccCCcccEEEEEEcccCCCCeEEEeecCCe
Q 021291 9 DPVAVLRGHRASVTDVCFHQTK-PILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGT 87 (314)
Q Consensus 9 ~~~~~l~~h~~~v~~~~~~~~~-~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~ 87 (314)
..+..|.||.+.|.|++=+|.. ..+|+|+.||.|+|||+.+.+++.+++.|.+. |..|++.. ..+++++.|.+
T Consensus 57 PFv~~L~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~~~~f~AH~G~--V~Gi~v~~----~~~~tvgdDKt 130 (433)
T KOG0268|consen 57 PFVGSLDGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRECIRTFKAHEGL--VRGICVTQ----TSFFTVGDDKT 130 (433)
T ss_pred cchhhccccccccchhhcCcchhhhhhccccCceEEEEehhhhhhhheeecccCc--eeeEEecc----cceEEecCCcc
Confidence 4577889999999999999965 78999999999999999999999999999955 99999976 78999999999
Q ss_pred EEEEeCCCCCCCCCCeeeeecceeeEEEeeeeecc-ccccccCCCCcceeeccCCceeeecCCCCCC---ceeccCCCce
Q 021291 88 VKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEP-YANAKQANEPKDCYEREVGETVDTDSLCDSK---DDVPAEGPKY 163 (314)
Q Consensus 88 v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~ 163 (314)
|+.|-++.. +..++...... ..+.-.. .......|....+|+......+....-+... +.|+|-...+
T Consensus 131 vK~wk~~~~-----p~~tilg~s~~---~gIdh~~~~~~FaTcGe~i~IWD~~R~~Pv~smswG~Dti~svkfNpvETsI 202 (433)
T KOG0268|consen 131 VKQWKIDGP-----PLHTILGKSVY---LGIDHHRKNSVFATCGEQIDIWDEQRDNPVSSMSWGADSISSVKFNPVETSI 202 (433)
T ss_pred eeeeeccCC-----cceeeeccccc---cccccccccccccccCceeeecccccCCccceeecCCCceeEEecCCCcchh
Confidence 999998763 12222222111 1111111 2223344556778888766655554444443 8899999888
Q ss_pred EEEeecCcCeEEEEecCCCceeeeecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEeecCCcEEEEEccCCCC
Q 021291 164 MAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGI 243 (314)
Q Consensus 164 ~~~~g~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~ 243 (314)
|+++++ |+.|.+||+++..++..+.. ......++ |+|. +. .+++|++|..++.||++....
T Consensus 203 Las~~s-DrsIvLyD~R~~~Pl~KVi~-------------~mRTN~Is-wnPe---af-nF~~a~ED~nlY~~DmR~l~~ 263 (433)
T KOG0268|consen 203 LASCAS-DRSIVLYDLRQASPLKKVIL-------------TMRTNTIC-WNPE---AF-NFVAANEDHNLYTYDMRNLSR 263 (433)
T ss_pred eeeecc-CCceEEEecccCCccceeee-------------ecccccee-cCcc---cc-ceeeccccccceehhhhhhcc
Confidence 876555 89999999999998877662 22344454 9994 33 799999999999999999899
Q ss_pred ceEeeecCCcceEEEEEeCCCCeEEEecCCCcEEEEecCCCe
Q 021291 244 PLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHST 285 (314)
Q Consensus 244 ~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~iw~~~~~~ 285 (314)
++....+|.+.|.+++|+|.|+-+++||.|.+|+||.++.+.
T Consensus 264 p~~v~~dhvsAV~dVdfsptG~EfvsgsyDksIRIf~~~~~~ 305 (433)
T KOG0268|consen 264 PLNVHKDHVSAVMDVDFSPTGQEFVSGSYDKSIRIFPVNHGH 305 (433)
T ss_pred cchhhcccceeEEEeccCCCcchhccccccceEEEeecCCCc
Confidence 999999999999999999999999999999999999998774
No 44
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=99.97 E-value=5.8e-29 Score=180.86 Aligned_cols=226 Identities=15% Similarity=0.257 Sum_probs=169.2
Q ss_pred CceEEecCCCCceeEEEEccCCCEEEEecCCCeEEEEeCCCCeEEEEEeccCCcccEEEEEEcccCCCCeEEEeecCCeE
Q 021291 9 DPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTV 88 (314)
Q Consensus 9 ~~~~~l~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~v 88 (314)
.|+.+|.+|++.|+++.|..+|+.++||+.||+++|||++...+.+.++ |. ++|.++..+| +...|++|..+|.|
T Consensus 74 ~Pv~t~e~h~kNVtaVgF~~dgrWMyTgseDgt~kIWdlR~~~~qR~~~-~~--spVn~vvlhp--nQteLis~dqsg~i 148 (311)
T KOG0315|consen 74 NPVATFEGHTKNVTAVGFQCDGRWMYTGSEDGTVKIWDLRSLSCQRNYQ-HN--SPVNTVVLHP--NQTELISGDQSGNI 148 (311)
T ss_pred CceeEEeccCCceEEEEEeecCeEEEecCCCceEEEEeccCcccchhcc-CC--CCcceEEecC--CcceEEeecCCCcE
Confidence 5899999999999999999999999999999999999999866666654 44 5699999999 88999999999999
Q ss_pred EEEeCCCCCCCCCCeeeeecceeeEEEeeeeeccccccccCCCCcceeeccCCc-----eeeecCCCCCC----ceeccC
Q 021291 89 KCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGE-----TVDTDSLCDSK----DDVPAE 159 (314)
Q Consensus 89 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~----~~~~~~ 159 (314)
++||+.+..+..+++-+. ........+.+++.. .......+.-.+|++-... .+..++..|.. .-+||+
T Consensus 149 rvWDl~~~~c~~~liPe~-~~~i~sl~v~~dgsm-l~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSPd 226 (311)
T KOG0315|consen 149 RVWDLGENSCTHELIPED-DTSIQSLTVMPDGSM-LAAANNKGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSPD 226 (311)
T ss_pred EEEEccCCccccccCCCC-CcceeeEEEcCCCcE-EEEecCCccEEEEEccCCCccccceEhhheecccceEEEEEECCC
Confidence 999999886654322111 112222222222211 2223333444556553322 34455666766 789999
Q ss_pred CCceEEEeecCcCeEEEEecCCC-ceeeeecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEeecCCcEEEEEc
Q 021291 160 GPKYMAVAGEQLSEVEIWDLNTA-ERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDI 238 (314)
Q Consensus 160 ~~~~~~~~g~~d~~i~vwd~~~~-~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~ 238 (314)
++++. +++.|.+++||+..+. +....+. +| ...++.++ |+.+ |+ ||++|+.|+.+++||+
T Consensus 227 ~k~la--t~ssdktv~iwn~~~~~kle~~l~--------gh----~rWvWdc~-FS~d---g~-YlvTassd~~~rlW~~ 287 (311)
T KOG0315|consen 227 VKYLA--TCSSDKTVKIWNTDDFFKLELVLT--------GH----QRWVWDCA-FSAD---GE-YLVTASSDHTARLWDL 287 (311)
T ss_pred CcEEE--eecCCceEEEEecCCceeeEEEee--------cC----CceEEeee-eccC---cc-EEEecCCCCceeeccc
Confidence 98654 4555899999999887 4444555 66 45888887 9988 66 9999999999999999
Q ss_pred cCCCCceEeeecCCcceEEEEEe
Q 021291 239 RNPGIPLTAMKVHLEPVLCLSID 261 (314)
Q Consensus 239 ~~~~~~~~~~~~h~~~v~~~~~~ 261 (314)
.. ++.+....+|..+..+++..
T Consensus 288 ~~-~k~v~qy~gh~K~~vc~~ln 309 (311)
T KOG0315|consen 288 SA-GKEVRQYQGHHKAAVCVALN 309 (311)
T ss_pred cc-CceeeecCCcccccEEEEee
Confidence 98 88899999999888887763
No 45
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=99.97 E-value=4.7e-29 Score=183.36 Aligned_cols=238 Identities=18% Similarity=0.203 Sum_probs=179.8
Q ss_pred CCCCceeEEEEccCCCEEEEecCCCeEEEEeCCCC--eEEEEEeccCCcccEEEEEEcccCCCCeEEEeecCCeEEEEeC
Q 021291 16 GHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQH--RTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDI 93 (314)
Q Consensus 16 ~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~--~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd~ 93 (314)
+|+..|+.++|+|.|++||+|+.|.++.||.-..+ +++.++++|+.+ |.|++|++ +|++||+++.|+.|-||.+
T Consensus 59 ~hkrsVRsvAwsp~g~~La~aSFD~t~~Iw~k~~~efecv~~lEGHEnE--VK~Vaws~--sG~~LATCSRDKSVWiWe~ 134 (312)
T KOG0645|consen 59 GHKRSVRSVAWSPHGRYLASASFDATVVIWKKEDGEFECVATLEGHENE--VKCVAWSA--SGNYLATCSRDKSVWIWEI 134 (312)
T ss_pred cchheeeeeeecCCCcEEEEeeccceEEEeecCCCceeEEeeeeccccc--eeEEEEcC--CCCEEEEeeCCCeEEEEEe
Confidence 79999999999999999999999999999986543 789999999955 99999999 9999999999999999999
Q ss_pred CCCCC-CCCCeeeeecceeeEEEeeeeeccccccccCCCCcceeec-cCCceeeecCCCCCC----ceeccCCCceEEEe
Q 021291 94 ENGGL-SSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYER-EVGETVDTDSLCDSK----DDVPAEGPKYMAVA 167 (314)
Q Consensus 94 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~ 167 (314)
..... ....+++.+......+.+.+.........++.......+. .........+.+|.. ++|++.|.++. +
T Consensus 135 deddEfec~aVL~~HtqDVK~V~WHPt~dlL~S~SYDnTIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~~~G~rl~--s 212 (312)
T KOG0645|consen 135 DEDDEFECIAVLQEHTQDVKHVIWHPTEDLLFSCSYDNTIKVYRDEDDDDWECVQTLDGHENTVWSLAFDNIGSRLV--S 212 (312)
T ss_pred cCCCcEEEEeeeccccccccEEEEcCCcceeEEeccCCeEEEEeecCCCCeeEEEEecCccceEEEEEecCCCceEE--E
Confidence 74431 1122455566666777777655444444444433333333 344566777888876 88999997665 7
Q ss_pred ecCcCeEEEEecCCCceeeeecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEeecCCcEEEEEccCC-CCc--
Q 021291 168 GEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNP-GIP-- 244 (314)
Q Consensus 168 g~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~-~~~-- 244 (314)
++.|++++||-..+. +.. - ....++.+. |. + | .|++++.|+.|++|.-... ..+
T Consensus 213 ~sdD~tv~Iw~~~~~-----~~~-------~----~sr~~Y~v~-W~-~---~--~IaS~ggD~~i~lf~~s~~~d~p~~ 269 (312)
T KOG0645|consen 213 CSDDGTVSIWRLYTD-----LSG-------M----HSRALYDVP-WD-N---G--VIASGGGDDAIRLFKESDSPDEPSW 269 (312)
T ss_pred ecCCcceEeeeeccC-----cch-------h----cccceEeee-ec-c---c--ceEeccCCCEEEEEEecCCCCCchH
Confidence 888999999986621 221 1 244666666 87 3 3 7999999999999976531 122
Q ss_pred ---eEeeecCCcceEEEEEeCC-CCeEEEecCCCcEEEEecC
Q 021291 245 ---LTAMKVHLEPVLCLSIDES-CNGGISGGADQKIVLYNLD 282 (314)
Q Consensus 245 ---~~~~~~h~~~v~~~~~~~~-~~~l~s~s~dg~i~iw~~~ 282 (314)
...-..|...|+++.|+|. ..+|++|+.||.|++|.+.
T Consensus 270 ~l~~~~~~aHe~dVNsV~w~p~~~~~L~s~~DDG~v~~W~l~ 311 (312)
T KOG0645|consen 270 NLLAKKEGAHEVDVNSVQWNPKVSNRLASGGDDGIVNFWELE 311 (312)
T ss_pred HHHHhhhcccccccceEEEcCCCCCceeecCCCceEEEEEec
Confidence 2234578999999999994 6689999999999999875
No 46
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=2.7e-30 Score=188.23 Aligned_cols=216 Identities=20% Similarity=0.292 Sum_probs=175.8
Q ss_pred CCCCCCceEEecCCCCceeEEEEcc-CCCEEEEecCCCeEEEEeCCCCeEEEEEeccCCcccEEEEEEcccCCCCeEEEe
Q 021291 4 RPPPPDPVAVLRGHRASVTDVCFHQ-TKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQ 82 (314)
Q Consensus 4 ~~~~~~~~~~l~~h~~~v~~~~~~~-~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~ 82 (314)
.+.|..|++.++.|..+|.++.|++ +++.+++++.|++|++|+...++.+.++.+|. ..|+...|+|. ..+.|+++
T Consensus 90 ~~~~s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~Sv~Tf~gh~--~~Iy~a~~sp~-~~nlfas~ 166 (311)
T KOG0277|consen 90 LTMPSKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPNSVQTFNGHN--SCIYQAAFSPH-IPNLFASA 166 (311)
T ss_pred cCCCCcchhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCCCcceEeecCCc--cEEEEEecCCC-CCCeEEEc
Confidence 4567789999999999999999999 67788889999999999999999999999998 55999999997 66899999
Q ss_pred ecCCeEEEEeCCCCCCCCCCeeeeecceeeEEEeeeeeccccccccCCCCcceeeccCCceeeecCCCCCCceeccCCCc
Q 021291 83 GRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPK 162 (314)
Q Consensus 83 ~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (314)
|.|+++++||++...... .+..+...... ..|+....+
T Consensus 167 Sgd~~l~lwdvr~~gk~~--~i~ah~~Eil~----------------------------------------cdw~ky~~~ 204 (311)
T KOG0277|consen 167 SGDGTLRLWDVRSPGKFM--SIEAHNSEILC----------------------------------------CDWSKYNHN 204 (311)
T ss_pred cCCceEEEEEecCCCcee--EEEeccceeEe----------------------------------------ecccccCCc
Confidence 999999999998753211 22222222222 347777677
Q ss_pred eEEEeecCcCeEEEEecCCCc-eeeeecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEeecCCcEEEEEccCC
Q 021291 163 YMAVAGEQLSEVEIWDLNTAE-RCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNP 241 (314)
Q Consensus 163 ~~~~~g~~d~~i~vwd~~~~~-~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~ 241 (314)
+++ +|+.|+.|+.||+++.+ ++..+. +| .-.+..+. |+|...+ +|++++.|-+++|||...+
T Consensus 205 vl~-Tg~vd~~vr~wDir~~r~pl~eL~--------gh----~~AVRkvk-~Sph~~~---lLaSasYDmT~riw~~~~~ 267 (311)
T KOG0277|consen 205 VLA-TGGVDNLVRGWDIRNLRTPLFELN--------GH----GLAVRKVK-FSPHHAS---LLASASYDMTVRIWDPERQ 267 (311)
T ss_pred EEE-ecCCCceEEEEehhhccccceeec--------CC----ceEEEEEe-cCcchhh---HhhhccccceEEecccccc
Confidence 766 67779999999999765 445554 66 34677887 9998442 8999999999999999875
Q ss_pred CCceEeeecCCcceEEEEEeC-CCCeEEEecCCCcEEEEec
Q 021291 242 GIPLTAMKVHLEPVLCLSIDE-SCNGGISGGADQKIVLYNL 281 (314)
Q Consensus 242 ~~~~~~~~~h~~~v~~~~~~~-~~~~l~s~s~dg~i~iw~~ 281 (314)
...+.+..-|++-|..+.|++ +..++|+++.|+.++||+.
T Consensus 268 ds~~e~~~~HtEFv~g~Dws~~~~~~vAs~gWDe~l~Vw~p 308 (311)
T KOG0277|consen 268 DSAIETVDHHTEFVCGLDWSLFDPGQVASTGWDELLYVWNP 308 (311)
T ss_pred hhhhhhhhccceEEeccccccccCceeeecccccceeeecc
Confidence 778888889999999999954 4558999999999999984
No 47
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=99.97 E-value=1.2e-29 Score=193.45 Aligned_cols=216 Identities=20% Similarity=0.367 Sum_probs=178.5
Q ss_pred CCCCceEEecCCCCceeEEEEccCCCEEEEecCCCeEEEEeCCCCeEEEEEeccCCcccEEEEEEcccCCCCeEEEeecC
Q 021291 6 PPPDPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRD 85 (314)
Q Consensus 6 ~~~~~~~~l~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d 85 (314)
..+++..++.||...|..+++|+-..||++++.|+.|+.||++..+.++.+.+|-. .|+|++..| .-+.|++|+.|
T Consensus 181 atg~LkltltGhi~~vr~vavS~rHpYlFs~gedk~VKCwDLe~nkvIR~YhGHlS--~V~~L~lhP--Tldvl~t~grD 256 (460)
T KOG0285|consen 181 ATGQLKLTLTGHIETVRGVAVSKRHPYLFSAGEDKQVKCWDLEYNKVIRHYHGHLS--GVYCLDLHP--TLDVLVTGGRD 256 (460)
T ss_pred ccCeEEEeecchhheeeeeeecccCceEEEecCCCeeEEEechhhhhHHHhccccc--eeEEEeccc--cceeEEecCCc
Confidence 35677889999999999999999999999999999999999999999999989984 499999999 77899999999
Q ss_pred CeEEEEeCCCCCCCCCCeeeeecceeeEEEeeeeeccccccccCCCCcceeeccCCceeeecCCCCCCceeccCCCceEE
Q 021291 86 GTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMA 165 (314)
Q Consensus 86 g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (314)
.++++||+++...+. .+..+...... +.+.|....++
T Consensus 257 st~RvWDiRtr~~V~----~l~GH~~~V~~--------------------------------------V~~~~~dpqvi- 293 (460)
T KOG0285|consen 257 STIRVWDIRTRASVH----VLSGHTNPVAS--------------------------------------VMCQPTDPQVI- 293 (460)
T ss_pred ceEEEeeecccceEE----EecCCCCccee--------------------------------------EEeecCCCceE-
Confidence 999999999986533 33333222221 12334444444
Q ss_pred EeecCcCeEEEEecCCCceeeeecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEeecCCcEEEEEccCCCCce
Q 021291 166 VAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPL 245 (314)
Q Consensus 166 ~~g~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~ 245 (314)
+|+.|++|++||++.++...++. .| +-.+.+++ .+|... .+++++.| .|+-|++.. +..+
T Consensus 294 -t~S~D~tvrlWDl~agkt~~tlt--------~h----kksvral~-lhP~e~----~fASas~d-nik~w~~p~-g~f~ 353 (460)
T KOG0285|consen 294 -TGSHDSTVRLWDLRAGKTMITLT--------HH----KKSVRALC-LHPKEN----LFASASPD-NIKQWKLPE-GEFL 353 (460)
T ss_pred -EecCCceEEEeeeccCceeEeee--------cc----cceeeEEe-cCCchh----hhhccCCc-cceeccCCc-cchh
Confidence 79999999999999999888887 45 44677777 999743 78888776 689999998 8888
Q ss_pred EeeecCCcceEEEEEeCCCCeEEEecCCCcEEEEecCCCeeeEe
Q 021291 246 TAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTYVLF 289 (314)
Q Consensus 246 ~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~iw~~~~~~~~~~ 289 (314)
+.+.+|...|++++...|+ ++++|++.|.+.+||.+++-.-++
T Consensus 354 ~nlsgh~~iintl~~nsD~-v~~~G~dng~~~fwdwksg~nyQ~ 396 (460)
T KOG0285|consen 354 QNLSGHNAIINTLSVNSDG-VLVSGGDNGSIMFWDWKSGHNYQR 396 (460)
T ss_pred hccccccceeeeeeeccCc-eEEEcCCceEEEEEecCcCccccc
Confidence 8899999999999998887 588999999999999998865443
No 48
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.97 E-value=1.7e-29 Score=189.32 Aligned_cols=220 Identities=17% Similarity=0.249 Sum_probs=174.8
Q ss_pred CceEEecCCCCceeEEEEccCCCEEEEecCCCeEEEEeCCC------------C------eEEEEEeccCCcccEEEEEE
Q 021291 9 DPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQ------------H------RTVSSSWVHSAAHGIVSVAT 70 (314)
Q Consensus 9 ~~~~~l~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~------------~------~~~~~~~~~~~~~~v~~~~~ 70 (314)
-....+..|++++.+.+|++||.++|||+.|-.|+|.|++. + -.++++-.|.. .|.++.|
T Consensus 103 yEt~ylt~HK~~cR~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~d--evn~l~F 180 (430)
T KOG0640|consen 103 YETKYLTSHKSPCRAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVD--EVNDLDF 180 (430)
T ss_pred cceEEEeecccceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccC--cccceee
Confidence 45667788999999999999999999999999999999872 1 24566777774 4999999
Q ss_pred cccCCCCeEEEeecCCeEEEEeCCCCCCCCCCeeeeecceeeEEEeeeeeccccccccCCCCcceeeccCCceeeecCCC
Q 021291 71 GPSIGLNKVISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLC 150 (314)
Q Consensus 71 ~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (314)
+| ....|++++.|++|+++|+......+ . ++.........+
T Consensus 181 HP--re~ILiS~srD~tvKlFDfsK~saKr--A--~K~~qd~~~vrs--------------------------------- 221 (430)
T KOG0640|consen 181 HP--RETILISGSRDNTVKLFDFSKTSAKR--A--FKVFQDTEPVRS--------------------------------- 221 (430)
T ss_pred cc--hhheEEeccCCCeEEEEecccHHHHH--H--HHHhhccceeee---------------------------------
Confidence 99 77999999999999999997654322 1 111111000000
Q ss_pred CCCceeccCCCceEEEeecCcCeEEEEecCCCceeeeecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEeecC
Q 021291 151 DSKDDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYED 230 (314)
Q Consensus 151 ~~~~~~~~~~~~~~~~~g~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~d 230 (314)
++|+|.|+++++ |..-.++++||+.+-++...-.+ ..+| .+.+.++. |++. |+ +.++|+.|
T Consensus 222 ---iSfHPsGefllv--gTdHp~~rlYdv~T~QcfvsanP-----d~qh----t~ai~~V~-Ys~t---~~-lYvTaSkD 282 (430)
T KOG0640|consen 222 ---ISFHPSGEFLLV--GTDHPTLRLYDVNTYQCFVSANP-----DDQH----TGAITQVR-YSST---GS-LYVTASKD 282 (430)
T ss_pred ---EeecCCCceEEE--ecCCCceeEEeccceeEeeecCc-----cccc----ccceeEEE-ecCC---cc-EEEEeccC
Confidence 569999997774 66678999999999888665542 1244 66889998 9998 55 89999999
Q ss_pred CcEEEEEccCCCCceEeee-cCCc-ceEEEEEeCCCCeEEEecCCCcEEEEecCCCeeeEe
Q 021291 231 GSILVWDIRNPGIPLTAMK-VHLE-PVLCLSIDESCNGGISGGADQKIVLYNLDHSTYVLF 289 (314)
Q Consensus 231 g~i~vwd~~~~~~~~~~~~-~h~~-~v~~~~~~~~~~~l~s~s~dg~i~iw~~~~~~~~~~ 289 (314)
|.|++||--+ ++++.++. +|.+ .|.+..|..+++|+.+.+.|..+++|++.+++.+..
T Consensus 283 G~IklwDGVS-~rCv~t~~~AH~gsevcSa~Ftkn~kyiLsSG~DS~vkLWEi~t~R~l~~ 342 (430)
T KOG0640|consen 283 GAIKLWDGVS-NRCVRTIGNAHGGSEVCSAVFTKNGKYILSSGKDSTVKLWEISTGRMLKE 342 (430)
T ss_pred CcEEeecccc-HHHHHHHHhhcCCceeeeEEEccCCeEEeecCCcceeeeeeecCCceEEE
Confidence 9999999877 78887775 6654 799999999999999999999999999999998875
No 49
>PLN00181 protein SPA1-RELATED; Provisional
Probab=99.97 E-value=7.1e-28 Score=218.09 Aligned_cols=246 Identities=13% Similarity=0.207 Sum_probs=179.0
Q ss_pred ecCCCCceeEEEEccCCCEEEEecCCCeEEEEeCCCC----e----EEEEEeccCCcccEEEEEEcccCCCCeEEEeecC
Q 021291 14 LRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQH----R----TVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRD 85 (314)
Q Consensus 14 l~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~----~----~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d 85 (314)
+.+|.+.|.+++|+|+|++||+|+.|+.|+|||.... . ....+.. . ..|.+++|++. ++.+|++++.|
T Consensus 479 ~~~~~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~~-~--~~v~~l~~~~~-~~~~las~~~D 554 (793)
T PLN00181 479 LLNSSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVELAS-R--SKLSGICWNSY-IKSQVASSNFE 554 (793)
T ss_pred ccCCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCcccccccccccceEEecc-c--CceeeEEeccC-CCCEEEEEeCC
Confidence 4458999999999999999999999999999997531 1 1222332 2 45899999873 46789999999
Q ss_pred CeEEEEeCCCCCCCCCCeeeeecceeeEEEeeeeeccccccccCCCCcceeeccCCceeeecCCCCCC---ceeccCCCc
Q 021291 86 GTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSK---DDVPAEGPK 162 (314)
Q Consensus 86 g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~ 162 (314)
|+|++||+.+++... .+..+........+++............+...+|++......... ..+.. +.|.+....
T Consensus 555 g~v~lWd~~~~~~~~--~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~-~~~~~v~~v~~~~~~g~ 631 (793)
T PLN00181 555 GVVQVWDVARSQLVT--EMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTI-KTKANICCVQFPSESGR 631 (793)
T ss_pred CeEEEEECCCCeEEE--EecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEEE-ecCCCeEEEEEeCCCCC
Confidence 999999999876533 223333344444444332333444555677888988776544332 22323 667554334
Q ss_pred eEEEeecCcCeEEEEecCCCc-eeeeecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEeecCCcEEEEEccCC
Q 021291 163 YMAVAGEQLSEVEIWDLNTAE-RCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNP 241 (314)
Q Consensus 163 ~~~~~g~~d~~i~vwd~~~~~-~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~ 241 (314)
.++ +|+.|+.|++||+++.. ....+. +| ...+.++. |.+ +. +|++++.|+.|++||++..
T Consensus 632 ~la-tgs~dg~I~iwD~~~~~~~~~~~~--------~h----~~~V~~v~-f~~----~~-~lvs~s~D~~ikiWd~~~~ 692 (793)
T PLN00181 632 SLA-FGSADHKVYYYDLRNPKLPLCTMI--------GH----SKTVSYVR-FVD----SS-TLVSSSTDNTLKLWDLSMS 692 (793)
T ss_pred EEE-EEeCCCeEEEEECCCCCccceEec--------CC----CCCEEEEE-EeC----CC-EEEEEECCCEEEEEeCCCC
Confidence 444 67779999999998765 344555 56 34677777 863 33 8999999999999999742
Q ss_pred -----CCceEeeecCCcceEEEEEeCCCCeEEEecCCCcEEEEecCCCe
Q 021291 242 -----GIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHST 285 (314)
Q Consensus 242 -----~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~iw~~~~~~ 285 (314)
..++..+.+|...+..++|++++.+|++|+.|+.|++|+...+.
T Consensus 693 ~~~~~~~~l~~~~gh~~~i~~v~~s~~~~~lasgs~D~~v~iw~~~~~~ 741 (793)
T PLN00181 693 ISGINETPLHSFMGHTNVKNFVGLSVSDGYIATGSETNEVFVYHKAFPM 741 (793)
T ss_pred ccccCCcceEEEcCCCCCeeEEEEcCCCCEEEEEeCCCEEEEEECCCCC
Confidence 35788899999999999999999999999999999999987654
No 50
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=99.97 E-value=3.9e-30 Score=187.13 Aligned_cols=250 Identities=16% Similarity=0.221 Sum_probs=198.2
Q ss_pred CCCCceEEecCCCCceeEEEEccCCCEEEEecCCCeEEEEeCCCCeEEEEEeccCCcccEEEEEEcccCCCCeEEEeecC
Q 021291 6 PPPDPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRD 85 (314)
Q Consensus 6 ~~~~~~~~l~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d 85 (314)
..+.-+.+|.||.+.|+....+.+....|+++.|=+-+|||.-+|..+..++ |.+- |..++|+. |.++|++|+.+
T Consensus 47 ~tgdwigtfeghkgavw~~~l~~na~~aasaaadftakvw~a~tgdelhsf~-hkhi--vk~~af~~--ds~~lltgg~e 121 (334)
T KOG0278|consen 47 DTGDWIGTFEGHKGAVWSATLNKNATRAASAAADFTAKVWDAVTGDELHSFE-HKHI--VKAVAFSQ--DSNYLLTGGQE 121 (334)
T ss_pred CCCCcEEeeeccCcceeeeecCchhhhhhhhcccchhhhhhhhhhhhhhhhh-hhhe--eeeEEecc--cchhhhccchH
Confidence 4556789999999999999999988889999999999999999999998885 6655 99999999 99999999999
Q ss_pred CeEEEEeCCCCCCCCCCeeeeecc--eeeEEEeeeeeccccccccCCCCcceeeccCCceeeecCCCCCC--ceeccCCC
Q 021291 86 GTVKCWDIENGGLSSNPSLTIKTN--SYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSK--DDVPAEGP 161 (314)
Q Consensus 86 g~v~iwd~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~ 161 (314)
..++|||++..+.. ..++..+ .+....+..... ..........++.|+.+.+.........+.- +.++++|+
T Consensus 122 kllrvfdln~p~Ap---p~E~~ghtg~Ir~v~wc~eD~-~iLSSadd~tVRLWD~rTgt~v~sL~~~s~VtSlEvs~dG~ 197 (334)
T KOG0278|consen 122 KLLRVFDLNRPKAP---PKEISGHTGGIRTVLWCHEDK-CILSSADDKTVRLWDHRTGTEVQSLEFNSPVTSLEVSQDGR 197 (334)
T ss_pred HHhhhhhccCCCCC---chhhcCCCCcceeEEEeccCc-eEEeeccCCceEEEEeccCcEEEEEecCCCCcceeeccCCC
Confidence 99999999877542 2233333 222222222222 2222367788899999998876665444433 89999998
Q ss_pred ceEEEeecCcCeEEEEecCCCceeeeecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEeecCCcEEEEEccCC
Q 021291 162 KYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNP 241 (314)
Q Consensus 162 ~~~~~~g~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~ 241 (314)
.+.++ ..+.|.+||..+...+..++.+ ..+.+.. .+|+ .. .+++|++|..++.||..+
T Consensus 198 ilTia---~gssV~Fwdaksf~~lKs~k~P-------------~nV~SAS-L~P~---k~-~fVaGged~~~~kfDy~T- 255 (334)
T KOG0278|consen 198 ILTIA---YGSSVKFWDAKSFGLLKSYKMP-------------CNVESAS-LHPK---KE-FFVAGGEDFKVYKFDYNT- 255 (334)
T ss_pred EEEEe---cCceeEEeccccccceeeccCc-------------ccccccc-ccCC---Cc-eEEecCcceEEEEEeccC-
Confidence 65432 2478999999999998888743 2344444 8887 33 899999999999999999
Q ss_pred CCceEee-ecCCcceEEEEEeCCCCeEEEecCCCcEEEEecCCCee
Q 021291 242 GIPLTAM-KVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTY 286 (314)
Q Consensus 242 ~~~~~~~-~~h~~~v~~~~~~~~~~~l~s~s~dg~i~iw~~~~~~~ 286 (314)
+..+..+ ++|-++|.++.|+|+|...++||.||+|++|.+..++.
T Consensus 256 geEi~~~nkgh~gpVhcVrFSPdGE~yAsGSEDGTirlWQt~~~~~ 301 (334)
T KOG0278|consen 256 GEEIGSYNKGHFGPVHCVRFSPDGELYASGSEDGTIRLWQTTPGKT 301 (334)
T ss_pred CceeeecccCCCCceEEEEECCCCceeeccCCCceEEEEEecCCCc
Confidence 7777775 89999999999999999999999999999999886654
No 51
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.97 E-value=5.1e-29 Score=205.92 Aligned_cols=270 Identities=17% Similarity=0.166 Sum_probs=211.8
Q ss_pred CceEEecCCCCceeEEEEc-cCCCEEEEecCCCeEEEEeCCCCeEEEEEeccCCcccEEEEEEcccCCCCeEEEeecCCe
Q 021291 9 DPVAVLRGHRASVTDVCFH-QTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGT 87 (314)
Q Consensus 9 ~~~~~l~~h~~~v~~~~~~-~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~ 87 (314)
++++.+-|-.+.|..|+|- |+.++||.++..+.+|+|+..+..+. .+.+|... |.++.... +|.+|+||+.|.+
T Consensus 314 ~i~k~ivG~ndEI~Dm~~lG~e~~~laVATNs~~lr~y~~~~~~c~-ii~GH~e~--vlSL~~~~--~g~llat~sKD~s 388 (775)
T KOG0319|consen 314 TIVKQIVGYNDEILDMKFLGPEESHLAVATNSPELRLYTLPTSYCQ-IIPGHTEA--VLSLDVWS--SGDLLATGSKDKS 388 (775)
T ss_pred EEehhhcCCchhheeeeecCCccceEEEEeCCCceEEEecCCCceE-EEeCchhh--eeeeeecc--cCcEEEEecCCce
Confidence 4566677889999999986 47789999999999999998887776 78899854 99999555 6689999999999
Q ss_pred EEEEeCCCCCCCCCC--eeeeecceeeEEEeeeeeccccccccCCCCcceeeccCCc----ee----eecCCCCCC----
Q 021291 88 VKCWDIENGGLSSNP--SLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGE----TV----DTDSLCDSK---- 153 (314)
Q Consensus 88 v~iwd~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~----~~~~~~~~~---- 153 (314)
+++|.++++.....+ ....+.+......++..+.+............+|.+...+ .+ ......|..
T Consensus 389 vilWr~~~~~~~~~~~a~~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~ 468 (775)
T KOG0319|consen 389 VILWRLNNNCSKSLCVAQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINC 468 (775)
T ss_pred EEEEEecCCcchhhhhhhhcccccccceeeecccCccEEEEecCCceEEEecCCCcccccccceehhhHHHHhhcccccc
Confidence 999998554332211 2233444444444544445555566667778888876521 11 112344555
Q ss_pred ceeccCCCceEEEeecCcCeEEEEecCCCceeeeecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEeecCCcE
Q 021291 154 DDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSI 233 (314)
Q Consensus 154 ~~~~~~~~~~~~~~g~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i 233 (314)
++++|+.. ++++|+.|++.+||++...+...++. || +..++++. |+|. .+ .+++++.|++|
T Consensus 469 Vaia~ndk--LiAT~SqDktaKiW~le~~~l~~vLs--------GH----~RGvw~V~-Fs~~---dq-~laT~SgD~Tv 529 (775)
T KOG0319|consen 469 VAIAPNDK--LIATGSQDKTAKIWDLEQLRLLGVLS--------GH----TRGVWCVS-FSKN---DQ-LLATCSGDKTV 529 (775)
T ss_pred eEecCCCc--eEEecccccceeeecccCceEEEEee--------CC----ccceEEEE-eccc---cc-eeEeccCCceE
Confidence 88889875 44589999999999999999999998 88 55789998 9998 44 89999999999
Q ss_pred EEEEccCCCCceEeeecCCcceEEEEEeCCCCeEEEecCCCcEEEEecCCCeeeEe-------eeeeeecCCCceec
Q 021291 234 LVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTYVLF-------GIGFVCDQEGNKFG 303 (314)
Q Consensus 234 ~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~iw~~~~~~~~~~-------~~~~~~~~~~~~~~ 303 (314)
+||.+.+ ..+++++.||...|..+.|-.++..|+|++.||.|++|++.+++++.. ..++++.+....|.
T Consensus 530 KIW~is~-fSClkT~eGH~~aVlra~F~~~~~qliS~~adGliKlWnikt~eC~~tlD~H~DrvWaL~~~~~~~~~~ 605 (775)
T KOG0319|consen 530 KIWSIST-FSCLKTFEGHTSAVLRASFIRNGKQLISAGADGLIKLWNIKTNECEMTLDAHNDRVWALSVSPLLDMFV 605 (775)
T ss_pred EEEEecc-ceeeeeecCccceeEeeeeeeCCcEEEeccCCCcEEEEeccchhhhhhhhhccceeEEEeecCccceeE
Confidence 9999999 999999999999999999999999999999999999999999988764 56667777666544
No 52
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=5.5e-29 Score=208.79 Aligned_cols=255 Identities=15% Similarity=0.196 Sum_probs=194.1
Q ss_pred eEEec-CCCCceeEEEEccCCCEEEEecCCCeEEEEeCCCC---------------------------------------
Q 021291 11 VAVLR-GHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQH--------------------------------------- 50 (314)
Q Consensus 11 ~~~l~-~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~--------------------------------------- 50 (314)
.+.+. +|.+.|+++.|++||+|||+||.||.|+||.+...
T Consensus 259 ~Qe~~~ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~ 338 (712)
T KOG0283|consen 259 VQEISNAHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSS 338 (712)
T ss_pred eeccccccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCccccccccccccccc
Confidence 34455 89999999999999999999999999999987550
Q ss_pred ---------------------eEEEEEeccCCcccEEEEEEcccCCCCeEEEeecCCeEEEEeCCCCCCCCCCeeeeecc
Q 021291 51 ---------------------RTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGGLSSNPSLTIKTN 109 (314)
Q Consensus 51 ---------------------~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~ 109 (314)
++++.+.+|... |..|.|+. + ++|++++.|.+|++|++...+|++ + -.+..
T Consensus 339 ~~~~~~s~~~~~p~~~f~f~ekP~~ef~GHt~D--ILDlSWSK--n-~fLLSSSMDKTVRLWh~~~~~CL~--~-F~Hnd 410 (712)
T KOG0283|consen 339 SRKGSQSPCVLLPLKAFVFSEKPFCEFKGHTAD--ILDLSWSK--N-NFLLSSSMDKTVRLWHPGRKECLK--V-FSHND 410 (712)
T ss_pred cccccCCccccCCCccccccccchhhhhccchh--heeccccc--C-CeeEeccccccEEeecCCCcceee--E-EecCC
Confidence 012334588855 99999998 5 999999999999999999988865 2 22344
Q ss_pred eeeEEEeeeeeccccccccCCCCcceeeccCCceeeecCCC-CCC-ceeccCCCceEEEeecCcCeEEEEecCCCceeee
Q 021291 110 SYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLC-DSK-DDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTR 187 (314)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~~~~~g~~d~~i~vwd~~~~~~~~~ 187 (314)
.+.+..|.+............+..++|.+...+.....-.. --. ++|.|+|+..+ .|+.+|.+++|++...+....
T Consensus 411 fVTcVaFnPvDDryFiSGSLD~KvRiWsI~d~~Vv~W~Dl~~lITAvcy~PdGk~av--IGt~~G~C~fY~t~~lk~~~~ 488 (712)
T KOG0283|consen 411 FVTCVAFNPVDDRYFISGSLDGKVRLWSISDKKVVDWNDLRDLITAVCYSPDGKGAV--IGTFNGYCRFYDTEGLKLVSD 488 (712)
T ss_pred eeEEEEecccCCCcEeecccccceEEeecCcCeeEeehhhhhhheeEEeccCCceEE--EEEeccEEEEEEccCCeEEEe
Confidence 56667788877777777788888999999777655432211 111 89999998665 588899999999998876655
Q ss_pred ecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEeecCCcEEEEEccCCCCceEeeecCCcc--eEEEEEeCCCC
Q 021291 188 LHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHLEP--VLCLSIDESCN 265 (314)
Q Consensus 188 ~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~h~~~--v~~~~~~~~~~ 265 (314)
+...... +. ......|+.++ |.|-.++ .+++.+.|..|+|+|.+. ..++..++|+... =....|+.||+
T Consensus 489 ~~I~~~~---~K-k~~~~rITG~Q-~~p~~~~---~vLVTSnDSrIRI~d~~~-~~lv~KfKG~~n~~SQ~~Asfs~Dgk 559 (712)
T KOG0283|consen 489 FHIRLHN---KK-KKQGKRITGLQ-FFPGDPD---EVLVTSNDSRIRIYDGRD-KDLVHKFKGFRNTSSQISASFSSDGK 559 (712)
T ss_pred eeEeecc---Cc-cccCceeeeeE-ecCCCCC---eEEEecCCCceEEEeccc-hhhhhhhcccccCCcceeeeEccCCC
Confidence 5421100 11 11122699998 9887654 577778899999999987 7888888876542 34567888999
Q ss_pred eEEEecCCCcEEEEecCCC
Q 021291 266 GGISGGADQKIVLYNLDHS 284 (314)
Q Consensus 266 ~l~s~s~dg~i~iw~~~~~ 284 (314)
+|++++.|..|++|+++..
T Consensus 560 ~IVs~seDs~VYiW~~~~~ 578 (712)
T KOG0283|consen 560 HIVSASEDSWVYIWKNDSF 578 (712)
T ss_pred EEEEeecCceEEEEeCCCC
Confidence 9999999999999998544
No 53
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=99.97 E-value=1.9e-28 Score=188.02 Aligned_cols=254 Identities=17% Similarity=0.309 Sum_probs=188.3
Q ss_pred CCCCceEEecCCCCceeEEEEccCCC---EEEEecCCCeEEEEeCCCCeE----EEEEeccCCcccEEEEEEcccCCCCe
Q 021291 6 PPPDPVAVLRGHRASVTDVCFHQTKP---ILFAGTTGGELRIWDTVQHRT----VSSSWVHSAAHGIVSVATGPSIGLNK 78 (314)
Q Consensus 6 ~~~~~~~~l~~h~~~v~~~~~~~~~~---~l~s~~~dg~v~iwd~~~~~~----~~~~~~~~~~~~v~~~~~~~~~~~~~ 78 (314)
..++..+++.||.++|.+++|.-... .|++++.|.++++|.++.++. +..-++|. ..|.+++..+ ++..
T Consensus 132 ~~Gk~~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~~~~~~~~~~~~GHk--~~V~sVsv~~--sgtr 207 (423)
T KOG0313|consen 132 LKGKSIKTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNVGENKVKALKVCRGHK--RSVDSVSVDS--SGTR 207 (423)
T ss_pred cCCceEEEEecCCcceeeeEEEecCCccceEEEecCCceEEEEEecCchhhhhHHhHhcccc--cceeEEEecC--CCCe
Confidence 45788999999999999988865333 599999999999999987653 33345888 4599999999 9999
Q ss_pred EEEeecCCeEEEEeCCCCC---------------------CCCCCeeeeecceeeEEEeeeeeccccccccCCCCcceee
Q 021291 79 VISQGRDGTVKCWDIENGG---------------------LSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYE 137 (314)
Q Consensus 79 l~s~~~dg~v~iwd~~~~~---------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (314)
+++|+.|.+|+||+..+.. ..+.|+..+..+...................-......|+
T Consensus 208 ~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d~~v~yS~SwDHTIk~WD 287 (423)
T KOG0313|consen 208 FCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGHTEPVSSVVWSDATVIYSVSWDHTIKVWD 287 (423)
T ss_pred EEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEecccccceeeEEEcCCCceEeecccceEEEEE
Confidence 9999999999999932211 1113444444443332222222233334444556778888
Q ss_pred ccCCceeeecCCCCCC--ceeccCCCceEEEeecCcCeEEEEecCCCce---eeeecccccCCCCCcCCCCCceeeeEEE
Q 021291 138 REVGETVDTDSLCDSK--DDVPAEGPKYMAVAGEQLSEVEIWDLNTAER---CTRLHQNSCGGSPNFSSKGRGMCMAVQA 212 (314)
Q Consensus 138 ~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~g~~d~~i~vwd~~~~~~---~~~~~~~~~~~~~~h~~~~~~~~~~~~~ 212 (314)
+..+...........- ++++|... ++ ++|+.|..+++||++++.- ..++. +| ...+.++.
T Consensus 288 letg~~~~~~~~~ksl~~i~~~~~~~-Ll-~~gssdr~irl~DPR~~~gs~v~~s~~--------gH----~nwVssvk- 352 (423)
T KOG0313|consen 288 LETGGLKSTLTTNKSLNCISYSPLSK-LL-ASGSSDRHIRLWDPRTGDGSVVSQSLI--------GH----KNWVSSVK- 352 (423)
T ss_pred eecccceeeeecCcceeEeecccccc-ee-eecCCCCceeecCCCCCCCceeEEeee--------cc----hhhhhhee-
Confidence 8887766555444444 66777553 34 4788899999999997752 34455 77 44778887
Q ss_pred ecCCCCCCceEEEEeecCCcEEEEEccCCCCceEeeecCCcceEEEEEeCCCCeEEEecCCCcEEEEecC
Q 021291 213 YLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLD 282 (314)
Q Consensus 213 ~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~iw~~~ 282 (314)
|+|. ..+.|++|+.|+++++||+|+...++..+.+|.+.|.++.|...+ +|++||.|++|+|+.-.
T Consensus 353 wsp~---~~~~~~S~S~D~t~klWDvRS~k~plydI~~h~DKvl~vdW~~~~-~IvSGGaD~~l~i~~~~ 418 (423)
T KOG0313|consen 353 WSPT---NEFQLVSGSYDNTVKLWDVRSTKAPLYDIAGHNDKVLSVDWNEGG-LIVSGGADNKLRIFKGS 418 (423)
T ss_pred cCCC---CceEEEEEecCCeEEEEEeccCCCcceeeccCCceEEEEeccCCc-eEEeccCcceEEEeccc
Confidence 9998 445899999999999999999667999999999999999997544 69999999999998654
No 54
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=1.6e-29 Score=184.22 Aligned_cols=208 Identities=17% Similarity=0.273 Sum_probs=165.7
Q ss_pred CCCceeEEEEcc-CCCEEEEecCCCeEEEEeCCC-CeEEEEEeccCCcccEEEEEEcccCCCCeEEEeecCCeEEEEeCC
Q 021291 17 HRASVTDVCFHQ-TKPILFAGTTGGELRIWDTVQ-HRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIE 94 (314)
Q Consensus 17 h~~~v~~~~~~~-~~~~l~s~~~dg~v~iwd~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd~~ 94 (314)
-.+.+..++|++ ..+.+++++.||+++|||+.. ..++..++.|..+ |.++.|++. ....++++|.|++|++|+..
T Consensus 59 ~~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~~~s~Pi~~~kEH~~E--V~Svdwn~~-~r~~~ltsSWD~TiKLW~~~ 135 (311)
T KOG0277|consen 59 TEDGLFDVAWSENHENQVIAASGDGSLRLFDLTMPSKPIHKFKEHKRE--VYSVDWNTV-RRRIFLTSSWDGTIKLWDPN 135 (311)
T ss_pred cccceeEeeecCCCcceEEEEecCceEEEeccCCCCcchhHHHhhhhh--eEEeccccc-cceeEEeeccCCceEeecCC
Confidence 467889999999 457889999999999999653 4678888999855 999999986 45778888999999999998
Q ss_pred CCCCCCCCeeeeecceeeEEEeeeeeccccccccCCCCcceeeccCCceeeecCCCCCCceeccCCCceEEEeecCcCeE
Q 021291 95 NGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQLSEV 174 (314)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i 174 (314)
.+..+. ++..+ ..+.+. ..|+|.-.++++ +.+.|+++
T Consensus 136 r~~Sv~----Tf~gh--~~~Iy~------------------------------------a~~sp~~~nlfa-s~Sgd~~l 172 (311)
T KOG0277|consen 136 RPNSVQ----TFNGH--NSCIYQ------------------------------------AAFSPHIPNLFA-SASGDGTL 172 (311)
T ss_pred CCcceE----eecCC--ccEEEE------------------------------------EecCCCCCCeEE-EccCCceE
Confidence 765433 33332 223222 458888888887 45569999
Q ss_pred EEEecCCCceeeeecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEeecCCcEEEEEccCCCCceEeeecCCcc
Q 021291 175 EIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHLEP 254 (314)
Q Consensus 175 ~vwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~h~~~ 254 (314)
++||++.......++ .|. ..+.++. |+.- +..++++|+.|+.|+.||+++...++.++.+|.-.
T Consensus 173 ~lwdvr~~gk~~~i~--------ah~----~Eil~cd-w~ky---~~~vl~Tg~vd~~vr~wDir~~r~pl~eL~gh~~A 236 (311)
T KOG0277|consen 173 RLWDVRSPGKFMSIE--------AHN----SEILCCD-WSKY---NHNVLATGGVDNLVRGWDIRNLRTPLFELNGHGLA 236 (311)
T ss_pred EEEEecCCCceeEEE--------ecc----ceeEeec-cccc---CCcEEEecCCCceEEEEehhhccccceeecCCceE
Confidence 999999765555566 663 3566766 7764 23399999999999999999989999999999999
Q ss_pred eEEEEEeCCC-CeEEEecCCCcEEEEecCCCee
Q 021291 255 VLCLSIDESC-NGGISGGADQKIVLYNLDHSTY 286 (314)
Q Consensus 255 v~~~~~~~~~-~~l~s~s~dg~i~iw~~~~~~~ 286 (314)
|..++|+|.. ..|+|++.|-+++|||...+..
T Consensus 237 VRkvk~Sph~~~lLaSasYDmT~riw~~~~~ds 269 (311)
T KOG0277|consen 237 VRKVKFSPHHASLLASASYDMTVRIWDPERQDS 269 (311)
T ss_pred EEEEecCcchhhHhhhccccceEEecccccchh
Confidence 9999998864 4689999999999999986643
No 55
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=99.97 E-value=3.4e-27 Score=188.36 Aligned_cols=270 Identities=20% Similarity=0.297 Sum_probs=197.2
Q ss_pred CceEEecCCCCceeEEEEccCCCEEEEecCCCeEEEEeCCCCeEE--EEEeccCCcccEEEEEEcccCCCCeEEEeecC-
Q 021291 9 DPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTV--SSSWVHSAAHGIVSVATGPSIGLNKVISQGRD- 85 (314)
Q Consensus 9 ~~~~~l~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d- 85 (314)
..+..+.+|...++-..|+|.|.|+|+|...|.|||||....+.+ ..++.-. ++|..|+|++ +++++++.++.
T Consensus 50 ~~~~iYtEH~~~vtVAkySPsG~yiASGD~sG~vRIWdtt~~~hiLKnef~v~a--G~I~Di~Wd~--ds~RI~avGEGr 125 (603)
T KOG0318|consen 50 ASVDIYTEHAHQVTVAKYSPSGFYIASGDVSGKVRIWDTTQKEHILKNEFQVLA--GPIKDISWDF--DSKRIAAVGEGR 125 (603)
T ss_pred cceeeeccccceeEEEEeCCCceEEeecCCcCcEEEEeccCcceeeeeeeeecc--cccccceeCC--CCcEEEEEecCc
Confidence 446778899999999999999999999999999999998764443 3444444 5599999999 99999987753
Q ss_pred ---CeEEEEeCCCCCCCCCCeeeeecceeeEEEeeeeeccccccccCCCCcceeeccCCc--eeeecCCCCCC----cee
Q 021291 86 ---GTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGE--TVDTDSLCDSK----DDV 156 (314)
Q Consensus 86 ---g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~----~~~ 156 (314)
|.+.+||.-+. .. .+..+......+.+.+..... ...++......+-.+. ........|.. +.|
T Consensus 126 erfg~~F~~DSG~S--vG--ei~GhSr~ins~~~KpsRPfR---i~T~sdDn~v~ffeGPPFKFk~s~r~HskFV~~VRy 198 (603)
T KOG0318|consen 126 ERFGHVFLWDSGNS--VG--EITGHSRRINSVDFKPSRPFR---IATGSDDNTVAFFEGPPFKFKSSFREHSKFVNCVRY 198 (603)
T ss_pred cceeEEEEecCCCc--cc--eeeccceeEeeeeccCCCceE---EEeccCCCeEEEeeCCCeeeeecccccccceeeEEE
Confidence 45677776442 22 334444445555444433222 2333333344433332 23334555666 889
Q ss_pred ccCCCceEEEeecCcCeEEEEecCCCceeeeecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEeecCCcEEEE
Q 021291 157 PAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVW 236 (314)
Q Consensus 157 ~~~~~~~~~~~g~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vw 236 (314)
+|||+.+ +++|+ ||++.+||=.+++.+..+.. ...+.+.++++. |+||.. .+++++.|.+++||
T Consensus 199 sPDG~~F-at~gs-Dgki~iyDGktge~vg~l~~---------~~aHkGsIfals-WsPDs~----~~~T~SaDkt~KIW 262 (603)
T KOG0318|consen 199 SPDGSRF-ATAGS-DGKIYIYDGKTGEKVGELED---------SDAHKGSIFALS-WSPDST----QFLTVSADKTIKIW 262 (603)
T ss_pred CCCCCeE-EEecC-CccEEEEcCCCccEEEEecC---------CCCccccEEEEE-ECCCCc----eEEEecCCceEEEE
Confidence 9999754 44454 89999999999999988872 333588999998 999944 89999999999999
Q ss_pred EccCCCC-------------------------------------------ceEeeecCCcceEEEEEeCCCCeEEEecCC
Q 021291 237 DIRNPGI-------------------------------------------PLTAMKVHLEPVLCLSIDESCNGGISGGAD 273 (314)
Q Consensus 237 d~~~~~~-------------------------------------------~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d 273 (314)
|+.+ .+ ++..+.+|...|+++..++++.+|++|+.|
T Consensus 263 dVs~-~slv~t~~~~~~v~dqqvG~lWqkd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~~~i~SgsyD 341 (603)
T KOG0318|consen 263 DVST-NSLVSTWPMGSTVEDQQVGCLWQKDHLITVSLSGTINYLNPSDPSVLKVISGHNKSITALTVSPDGKTIYSGSYD 341 (603)
T ss_pred Eeec-cceEEEeecCCchhceEEEEEEeCCeEEEEEcCcEEEEecccCCChhheecccccceeEEEEcCCCCEEEeeccC
Confidence 9865 22 344567899999999999999999999999
Q ss_pred CcEEEEecCCCeee--------EeeeeeeecCCCceeceee
Q 021291 274 QKIVLYNLDHSTYV--------LFGIGFVCDQEGNKFGTTW 306 (314)
Q Consensus 274 g~i~iw~~~~~~~~--------~~~~~~~~~~~~~~~~~~w 306 (314)
|.|.-|+..++..- .++.++..+..+.++-..|
T Consensus 342 G~I~~W~~~~g~~~~~~g~~h~nqI~~~~~~~~~~~~t~g~ 382 (603)
T KOG0318|consen 342 GHINSWDSGSGTSDRLAGKGHTNQIKGMAASESGELFTIGW 382 (603)
T ss_pred ceEEEEecCCccccccccccccceEEEEeecCCCcEEEEec
Confidence 99999999887643 2466677777677666655
No 56
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=3e-28 Score=182.77 Aligned_cols=247 Identities=17% Similarity=0.290 Sum_probs=189.4
Q ss_pred CceEEecCCCCceeEEEEccCCCEEEEecCCCeEEEEeCCCCeEEEEEeccCCcccEEEEEEcccCCCCeEEEeecCCeE
Q 021291 9 DPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTV 88 (314)
Q Consensus 9 ~~~~~l~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~v 88 (314)
.++..+..|.++|++++. ++.++|+|+.|-+|+|||..+...+..+..|.+ .|+++.|.+......|++|+.||.|
T Consensus 34 ~~lF~~~aH~~sitavAV--s~~~~aSGssDetI~IYDm~k~~qlg~ll~Hag--sitaL~F~~~~S~shLlS~sdDG~i 109 (362)
T KOG0294|consen 34 KPLFAFSAHAGSITALAV--SGPYVASGSSDETIHIYDMRKRKQLGILLSHAG--SITALKFYPPLSKSHLLSGSDDGHI 109 (362)
T ss_pred eccccccccccceeEEEe--cceeEeccCCCCcEEEEeccchhhhcceecccc--ceEEEEecCCcchhheeeecCCCcE
Confidence 457888999999999999 489999999999999999999999999988984 4999999983222389999999999
Q ss_pred EEEeCCCCCCCCCCeeeeecceeeEEEeeeeeccccccccCCCCcceeeccCCceeeecCCCCCC--ceeccCCCceEEE
Q 021291 89 KCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSK--DDVPAEGPKYMAV 166 (314)
Q Consensus 89 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~ 166 (314)
.+|+.....++. .+..+........+.+.+. .+...........|++-.++........+.. +.|+|.|+++++
T Consensus 110 ~iw~~~~W~~~~--slK~H~~~Vt~lsiHPS~K-LALsVg~D~~lr~WNLV~Gr~a~v~~L~~~at~v~w~~~Gd~F~v- 185 (362)
T KOG0294|consen 110 IIWRVGSWELLK--SLKAHKGQVTDLSIHPSGK-LALSVGGDQVLRTWNLVRGRVAFVLNLKNKATLVSWSPQGDHFVV- 185 (362)
T ss_pred EEEEcCCeEEee--eecccccccceeEecCCCc-eEEEEcCCceeeeehhhcCccceeeccCCcceeeEEcCCCCEEEE-
Confidence 999999887655 2333333333333333322 2334455566778888777655544444444 999999998765
Q ss_pred eecCcCeEEEEecCCCceeeeecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEeecCCcEEEEEccCCCCceE
Q 021291 167 AGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLT 246 (314)
Q Consensus 167 ~g~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~~ 246 (314)
.+. ..|-+|.+.+......+.. ...+.++. |.- +. .+++|..|+.|.+||.+. ..++.
T Consensus 186 ~~~--~~i~i~q~d~A~v~~~i~~-------------~~r~l~~~-~l~----~~-~L~vG~d~~~i~~~D~ds-~~~~~ 243 (362)
T KOG0294|consen 186 SGR--NKIDIYQLDNASVFREIEN-------------PKRILCAT-FLD----GS-ELLVGGDNEWISLKDTDS-DTPLT 243 (362)
T ss_pred Eec--cEEEEEecccHhHhhhhhc-------------cccceeee-ecC----Cc-eEEEecCCceEEEeccCC-Cccce
Confidence 343 6799999987776555541 12344443 442 33 899999999999999998 89999
Q ss_pred eeecCCcceEEEEE--eCCCCeEEEecCCCcEEEEecCCCe
Q 021291 247 AMKVHLEPVLCLSI--DESCNGGISGGADQKIVLYNLDHST 285 (314)
Q Consensus 247 ~~~~h~~~v~~~~~--~~~~~~l~s~s~dg~i~iw~~~~~~ 285 (314)
.+.+|...|.++.+ .|++.+|+|+|.||.|+|||++...
T Consensus 244 ~~~AH~~RVK~i~~~~~~~~~~lvTaSSDG~I~vWd~~~~~ 284 (362)
T KOG0294|consen 244 EFLAHENRVKDIASYTNPEHEYLVTASSDGFIKVWDIDMET 284 (362)
T ss_pred eeecchhheeeeEEEecCCceEEEEeccCceEEEEEccccc
Confidence 99999999999996 7889999999999999999998773
No 57
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=1.9e-27 Score=178.73 Aligned_cols=248 Identities=17% Similarity=0.284 Sum_probs=186.1
Q ss_pred CceEEecCCCCceeEEEEccCCCEEEEecCCCeEEEEeCCCCeEEE----------------------------------
Q 021291 9 DPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVS---------------------------------- 54 (314)
Q Consensus 9 ~~~~~l~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~---------------------------------- 54 (314)
++.+.|+.-...|+++.|+++|.+|++++.|-+++|||..+++++.
T Consensus 5 ~~ak~f~~~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~ti~skkyG~~~~~Fth~~~~~i~sStk~d~tIry 84 (311)
T KOG1446|consen 5 RPAKVFRETNGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVKTINSKKYGVDLACFTHHSNTVIHSSTKEDDTIRY 84 (311)
T ss_pred ccccccccCCCceeEEEecCCCCEEEEecCCCeEEEEEcCCCceeeEeecccccccEEEEecCCceEEEccCCCCCceEE
Confidence 4566777778999999999999999999999999999988776533
Q ss_pred ----------EEeccCCcccEEEEEEcccCCCCeEEEeecCCeEEEEeCCCCCCCCCCeeeeecceeeEEEeeeeecccc
Q 021291 55 ----------SSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYA 124 (314)
Q Consensus 55 ----------~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 124 (314)
.+.+|. ..|.+|+.+| -++.|++++.|++|++||++..++.. -+.......+++.+.+-..+
T Consensus 85 Lsl~dNkylRYF~GH~--~~V~sL~~sP--~~d~FlS~S~D~tvrLWDlR~~~cqg----~l~~~~~pi~AfDp~GLifA 156 (311)
T KOG1446|consen 85 LSLHDNKYLRYFPGHK--KRVNSLSVSP--KDDTFLSSSLDKTVRLWDLRVKKCQG----LLNLSGRPIAAFDPEGLIFA 156 (311)
T ss_pred EEeecCceEEEcCCCC--ceEEEEEecC--CCCeEEecccCCeEEeeEecCCCCce----EEecCCCcceeECCCCcEEE
Confidence 334787 4599999999 77999999999999999999887754 33444445555655543333
Q ss_pred ccccCCCCcceeeccCC-ceeee--cCC--CCCC---ceeccCCCceEEEeecCcCeEEEEecCCCceeeeecccccCCC
Q 021291 125 NAKQANEPKDCYEREVG-ETVDT--DSL--CDSK---DDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGS 196 (314)
Q Consensus 125 ~~~~~~~~~~~~~~~~~-~~~~~--~~~--~~~~---~~~~~~~~~~~~~~g~~d~~i~vwd~~~~~~~~~~~~~~~~~~ 196 (314)
...... ...+++++.- +.+.. .+. .+.. +.|+|+|+.+++.+. .+.+++.|.-+|..+.++.
T Consensus 157 ~~~~~~-~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~--~s~~~~lDAf~G~~~~tfs------- 226 (311)
T KOG1446|consen 157 LANGSE-LIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTN--ASFIYLLDAFDGTVKSTFS------- 226 (311)
T ss_pred EecCCC-eEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeC--CCcEEEEEccCCcEeeeEe-------
Confidence 333322 6777777653 22211 111 1222 999999999987544 5899999999999988888
Q ss_pred CCcCCCCCceeeeEEEecCCCCCCceEEEEeecCCcEEEEEccCCCCceEeeec-CCcceEEEEEeCCCCeEEEecCCCc
Q 021291 197 PNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKV-HLEPVLCLSIDESCNGGISGGADQK 275 (314)
Q Consensus 197 ~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~-h~~~v~~~~~~~~~~~l~s~s~dg~ 275 (314)
++....... ... +|.|+ ++ ++++|+.||+|.+|++++ +..+..+.+ +..++.++.|+|....++|+ +..
T Consensus 227 -~~~~~~~~~-~~a-~ftPd---s~-Fvl~gs~dg~i~vw~~~t-g~~v~~~~~~~~~~~~~~~fnP~~~mf~sa--~s~ 296 (311)
T KOG1446|consen 227 -GYPNAGNLP-LSA-TFTPD---SK-FVLSGSDDGTIHVWNLET-GKKVAVLRGPNGGPVSCVRFNPRYAMFVSA--SSN 296 (311)
T ss_pred -eccCCCCcc-eeE-EECCC---Cc-EEEEecCCCcEEEEEcCC-CcEeeEecCCCCCCccccccCCceeeeeec--Cce
Confidence 555544333 333 49998 55 999999999999999998 888888887 78999999999997766665 557
Q ss_pred EEEEecCCC
Q 021291 276 IVLYNLDHS 284 (314)
Q Consensus 276 i~iw~~~~~ 284 (314)
+.+|=.+..
T Consensus 297 l~fw~p~~~ 305 (311)
T KOG1446|consen 297 LVFWLPDED 305 (311)
T ss_pred EEEEecccc
Confidence 888866543
No 58
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=99.97 E-value=2.9e-27 Score=189.91 Aligned_cols=244 Identities=25% Similarity=0.403 Sum_probs=186.1
Q ss_pred CceEEecCCCCceeEEEEccCCCEEEEecCCCeEEEEeCCCCeEEEEEeccCCcccEEEEEEcccCCCCeEEEeecCCeE
Q 021291 9 DPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTV 88 (314)
Q Consensus 9 ~~~~~l~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~v 88 (314)
+....+.+|...+..+.|+|++++|++++.||.|++||+.+++.+..+..|.. .|.++.|++ ++.++++++.|+.|
T Consensus 42 ~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~~~~~~~~~~~~~~~~~--~i~~~~~~~--~~~~~~~~~~~~~i 117 (289)
T cd00200 42 ELLRTLKGHTGPVRDVAASADGTYLASGSSDKTIRLWDLETGECVRTLTGHTS--YVSSVAFSP--DGRILSSSSRDKTI 117 (289)
T ss_pred CcEEEEecCCcceeEEEECCCCCEEEEEcCCCeEEEEEcCcccceEEEeccCC--cEEEEEEcC--CCCEEEEecCCCeE
Confidence 46778889999999999999999999999999999999998888888888874 499999999 77888888889999
Q ss_pred EEEeCCCCCCCCCCeeeeecceeeEEEeeeeeccccccccCCCCcceeeccCCceeeecCCCCCC----ceeccCCCceE
Q 021291 89 KCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSK----DDVPAEGPKYM 164 (314)
Q Consensus 89 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~ 164 (314)
.+||+++++... .+..+........+.+. ..........+...+|++...+.... +..|.. ++|+|+++.++
T Consensus 118 ~~~~~~~~~~~~--~~~~~~~~i~~~~~~~~-~~~l~~~~~~~~i~i~d~~~~~~~~~-~~~~~~~i~~~~~~~~~~~l~ 193 (289)
T cd00200 118 KVWDVETGKCLT--TLRGHTDWVNSVAFSPD-GTFVASSSQDGTIKLWDLRTGKCVAT-LTGHTGEVNSVAFSPDGEKLL 193 (289)
T ss_pred EEEECCCcEEEE--EeccCCCcEEEEEEcCc-CCEEEEEcCCCcEEEEEcccccccee-EecCccccceEEECCCcCEEE
Confidence 999999765432 12212222333333332 11222222356677777765443322 224442 88999987665
Q ss_pred EEeecCcCeEEEEecCCCceeeeecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEeecCCcEEEEEccCCCCc
Q 021291 165 AVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIP 244 (314)
Q Consensus 165 ~~~g~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~ 244 (314)
+ ++.|+.|++||+++++.+..+. .| ...+.++. |+|+ +. ++++++.||.|++||+.+ +.+
T Consensus 194 ~--~~~~~~i~i~d~~~~~~~~~~~--------~~----~~~i~~~~-~~~~---~~-~~~~~~~~~~i~i~~~~~-~~~ 253 (289)
T cd00200 194 S--SSSDGTIKLWDLSTGKCLGTLR--------GH----ENGVNSVA-FSPD---GY-LLASGSEDGTIRVWDLRT-GEC 253 (289)
T ss_pred E--ecCCCcEEEEECCCCceecchh--------hc----CCceEEEE-EcCC---Cc-EEEEEcCCCcEEEEEcCC-cee
Confidence 4 3448999999999888877775 34 33677787 9997 43 788888899999999997 788
Q ss_pred eEeeecCCcceEEEEEeCCCCeEEEecCCCcEEEEe
Q 021291 245 LTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYN 280 (314)
Q Consensus 245 ~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~iw~ 280 (314)
+..+..|...|.+++|++++.+|++++.||.|++|+
T Consensus 254 ~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iw~ 289 (289)
T cd00200 254 VQTLSGHTNSVTSLAWSPDGKRLASGSADGTIRIWD 289 (289)
T ss_pred EEEccccCCcEEEEEECCCCCEEEEecCCCeEEecC
Confidence 888889999999999999999999999999999996
No 59
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=99.97 E-value=4e-30 Score=195.50 Aligned_cols=192 Identities=18% Similarity=0.274 Sum_probs=147.5
Q ss_pred EEEEEEcccCCCCeEEEeecCCeEEEEeCCCCCCCCCCeeeeecceeeEEEeeeeeccccccccCCCCcceeeccCCcee
Q 021291 65 IVSVATGPSIGLNKVISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETV 144 (314)
Q Consensus 65 v~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 144 (314)
|+|+.+.. ..+++|..|.+|+|||.++..+.. .+..+........+.-. ........+...+|+++.++.+
T Consensus 200 VYClQYDD----~kiVSGlrDnTikiWD~n~~~c~~--~L~GHtGSVLCLqyd~r---viisGSSDsTvrvWDv~tge~l 270 (499)
T KOG0281|consen 200 VYCLQYDD----EKIVSGLRDNTIKIWDKNSLECLK--ILTGHTGSVLCLQYDER---VIVSGSSDSTVRVWDVNTGEPL 270 (499)
T ss_pred eEEEEecc----hhhhcccccCceEEeccccHHHHH--hhhcCCCcEEeeeccce---EEEecCCCceEEEEeccCCchh
Confidence 99999999 789999999999999999988877 66677766666555432 2334555677888999888765
Q ss_pred eecCCCCCC--ceeccCCCceEEEeecCcCeEEEEecCCCcee---eeecccccCCCCCcCCCCCceeeeEEEecCCCCC
Q 021291 145 DTDSLCDSK--DDVPAEGPKYMAVAGEQLSEVEIWDLNTAERC---TRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQ 219 (314)
Q Consensus 145 ~~~~~~~~~--~~~~~~~~~~~~~~g~~d~~i~vwd~~~~~~~---~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~ 219 (314)
.. +.+|.+ +.+-..+. ++ ++++.|.++.+||+.....+ ..+. || ...+..+. |+..
T Consensus 271 ~t-lihHceaVLhlrf~ng-~m-vtcSkDrsiaVWdm~sps~it~rrVLv--------GH----rAaVNvVd-fd~k--- 331 (499)
T KOG0281|consen 271 NT-LIHHCEAVLHLRFSNG-YM-VTCSKDRSIAVWDMASPTDITLRRVLV--------GH----RAAVNVVD-FDDK--- 331 (499)
T ss_pred hH-HhhhcceeEEEEEeCC-EE-EEecCCceeEEEeccCchHHHHHHHHh--------hh----hhheeeec-cccc---
Confidence 53 344444 22222223 33 37888999999999876532 2333 67 45677776 8743
Q ss_pred CceEEEEeecCCcEEEEEccCCCCceEeeecCCcceEEEEEeCCCCeEEEecCCCcEEEEecCCCeeeEee
Q 021291 220 GFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTYVLFG 290 (314)
Q Consensus 220 g~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~iw~~~~~~~~~~~ 290 (314)
++++++.|.+|++|++.+ .+.+.++.+|...|-|+.+. ++++++||.|.+|++||++.|.++...
T Consensus 332 ---yIVsASgDRTikvW~~st-~efvRtl~gHkRGIAClQYr--~rlvVSGSSDntIRlwdi~~G~cLRvL 396 (499)
T KOG0281|consen 332 ---YIVSASGDRTIKVWSTST-CEFVRTLNGHKRGIACLQYR--DRLVVSGSSDNTIRLWDIECGACLRVL 396 (499)
T ss_pred ---eEEEecCCceEEEEeccc-eeeehhhhcccccceehhcc--CeEEEecCCCceEEEEeccccHHHHHH
Confidence 999999999999999999 99999999999999998875 459999999999999999999876543
No 60
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.96 E-value=2.2e-28 Score=206.71 Aligned_cols=213 Identities=25% Similarity=0.358 Sum_probs=175.6
Q ss_pred CCCceEE-ecCCCCceeEEEEccCCCEEEEecCCCeEEEEeCCCCeEEEEEeccCCcccEEEEEEcccCCCCeEEEeecC
Q 021291 7 PPDPVAV-LRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRD 85 (314)
Q Consensus 7 ~~~~~~~-l~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d 85 (314)
.+..+.+ +.||.+.|.+++|..-+.+|++|+.|.+++|||..+|++...+.+|... |.++...+ ..+++|+.|
T Consensus 237 ~~~~i~~~l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~sg~C~~~l~gh~st--v~~~~~~~----~~~~sgs~D 310 (537)
T KOG0274|consen 237 NGYLILTRLVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWDCSTGECTHSLQGHTSS--VRCLTIDP----FLLVSGSRD 310 (537)
T ss_pred cceEEEeeccCCCCCceeEEEecCCCEEEEEecCCcEEeEecCCCcEEEEecCCCce--EEEEEccC----ceEeeccCC
Confidence 3455666 9999999999999877789999999999999999999999999999955 99999876 788999999
Q ss_pred CeEEEEeCCCCCCCCCCeeeeecceeeEEEeeeeeccccccccCCCCcceeeccCCceeeecCCCCCCceeccCCCceEE
Q 021291 86 GTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMA 165 (314)
Q Consensus 86 g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (314)
.+|++|++.++.++. ++..+..++.. ..-++. ++
T Consensus 311 ~tVkVW~v~n~~~l~--l~~~h~~~V~~------------------------------------------v~~~~~-~l- 344 (537)
T KOG0274|consen 311 NTVKVWDVTNGACLN--LLRGHTGPVNC------------------------------------------VQLDEP-LL- 344 (537)
T ss_pred ceEEEEeccCcceEE--EeccccccEEE------------------------------------------EEecCC-EE-
Confidence 999999999987754 22222222221 112233 33
Q ss_pred EeecCcCeEEEEecCCCceeeeecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEeecCCcEEEEEccCCC-Cc
Q 021291 166 VAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPG-IP 244 (314)
Q Consensus 166 ~~g~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~-~~ 244 (314)
++|+.|++|++||+.+++++..+. +| ...+.++. +.+. . .+++|+.|++|++||+++ . ++
T Consensus 345 vsgs~d~~v~VW~~~~~~cl~sl~--------gH----~~~V~sl~-~~~~----~-~~~Sgs~D~~IkvWdl~~-~~~c 405 (537)
T KOG0274|consen 345 VSGSYDGTVKVWDPRTGKCLKSLS--------GH----TGRVYSLI-VDSE----N-RLLSGSLDTTIKVWDLRT-KRKC 405 (537)
T ss_pred EEEecCceEEEEEhhhceeeeeec--------CC----cceEEEEE-ecCc----c-eEEeeeeccceEeecCCc-hhhh
Confidence 378889999999999999999999 77 55777776 7762 1 899999999999999998 6 89
Q ss_pred eEeeecCCcceEEEEEeCCCCeEEEecCCCcEEEEecCCCeeeEeeee
Q 021291 245 LTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTYVLFGIG 292 (314)
Q Consensus 245 ~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~iw~~~~~~~~~~~~~ 292 (314)
+..+.+|.+-|..+.+..+ +|++++.|++|++||..+++++....+
T Consensus 406 ~~tl~~h~~~v~~l~~~~~--~Lvs~~aD~~Ik~WD~~~~~~~~~~~~ 451 (537)
T KOG0274|consen 406 IHTLQGHTSLVSSLLLRDN--FLVSSSADGTIKLWDAEEGECLRTLEG 451 (537)
T ss_pred hhhhcCCcccccccccccc--eeEeccccccEEEeecccCceeeeecc
Confidence 9999999999977776555 899999999999999999998876544
No 61
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.96 E-value=2.7e-28 Score=198.40 Aligned_cols=208 Identities=19% Similarity=0.320 Sum_probs=171.5
Q ss_pred CCceEEecCCCCceeEEEEccCCCEEEEecCCCeEEEEeCCCC-eEEEEEeccCCcccEEEEEEcccCCCCeEEEeecCC
Q 021291 8 PDPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQH-RTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDG 86 (314)
Q Consensus 8 ~~~~~~l~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg 86 (314)
.+.+++|.+|.+-|+|++.+|...+++|+|.|-+|++||.+.+ .+.+++.+|++- |.+++|+|. |.+.|++++-|+
T Consensus 87 ~ekV~~FeAH~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~~wa~~qtfeGH~Hy--VMqv~fnPk-D~ntFaS~sLDr 163 (794)
T KOG0276|consen 87 GEKVKTFEAHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWENEWACEQTFEGHEHY--VMQVAFNPK-DPNTFASASLDR 163 (794)
T ss_pred ceeeEEeeccccceeeeeecCCCCeEEecCCccEEEEeeccCceeeeeEEcCcceE--EEEEEecCC-Cccceeeeeccc
Confidence 4678999999999999999999999999999999999999864 788999999966 999999997 678999999999
Q ss_pred eEEEEeCCCCCCCCCCeeeeecceeeEEEeeeeeccccccccCCCCcceeeccCCceeeecCCCCCCceeccCCCceEEE
Q 021291 87 TVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAV 166 (314)
Q Consensus 87 ~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (314)
+|++|.+.+... .+++..+...... +++-+-|+...++
T Consensus 164 TVKVWslgs~~~----nfTl~gHekGVN~--------------------------------------Vdyy~~gdkpylI 201 (794)
T KOG0276|consen 164 TVKVWSLGSPHP----NFTLEGHEKGVNC--------------------------------------VDYYTGGDKPYLI 201 (794)
T ss_pred cEEEEEcCCCCC----ceeeeccccCcce--------------------------------------EEeccCCCcceEE
Confidence 999999987754 4455544332221 3344555444555
Q ss_pred eecCcCeEEEEecCCCceeeeecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEeecCCcEEEEEccCCCCceE
Q 021291 167 AGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLT 246 (314)
Q Consensus 167 ~g~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~~ 246 (314)
+|+.|.+|+|||.++..+++++. ||.. .+..+. |+|.-| ++++|++||+++||+..+ -+...
T Consensus 202 sgaDD~tiKvWDyQtk~CV~TLe--------GHt~----Nvs~v~-fhp~lp----iiisgsEDGTvriWhs~T-y~lE~ 263 (794)
T KOG0276|consen 202 SGADDLTIKVWDYQTKSCVQTLE--------GHTN----NVSFVF-FHPELP----IIISGSEDGTVRIWNSKT-YKLEK 263 (794)
T ss_pred ecCCCceEEEeecchHHHHHHhh--------cccc----cceEEE-ecCCCc----EEEEecCCccEEEecCcc-eehhh
Confidence 89999999999999999999999 8855 555565 999865 999999999999999988 66777
Q ss_pred eeecCCcceEEEEEeCCCCeEEEecCCCcEEE
Q 021291 247 AMKVHLEPVLCLSIDESCNGGISGGADQKIVL 278 (314)
Q Consensus 247 ~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~i 278 (314)
++.-.-+.|++++-.+....++.|.++|.|.+
T Consensus 264 tLn~gleRvW~I~~~k~~~~i~vG~Deg~i~v 295 (794)
T KOG0276|consen 264 TLNYGLERVWCIAAHKGDGKIAVGFDEGSVTV 295 (794)
T ss_pred hhhcCCceEEEEeecCCCCeEEEeccCCcEEE
Confidence 77777889999999887777888877776544
No 62
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.96 E-value=2.8e-28 Score=201.58 Aligned_cols=251 Identities=16% Similarity=0.279 Sum_probs=190.5
Q ss_pred CceEEecCCCCceeEEEEccCCCEEEEecCCCeEEEEeCCCCe----EEEEEeccCCcccEEEEEEcccCCCCeEEEeec
Q 021291 9 DPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHR----TVSSSWVHSAAHGIVSVATGPSIGLNKVISQGR 84 (314)
Q Consensus 9 ~~~~~l~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~----~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~ 84 (314)
-..+.+.||++.|.+++...+|.+|+||+.|.++++|.++++. ++....+|.+. |.+++++.. ...+|+++|.
T Consensus 356 ~~c~ii~GH~e~vlSL~~~~~g~llat~sKD~svilWr~~~~~~~~~~~a~~~gH~~s--vgava~~~~-~asffvsvS~ 432 (775)
T KOG0319|consen 356 SYCQIIPGHTEAVLSLDVWSSGDLLATGSKDKSVILWRLNNNCSKSLCVAQANGHTNS--VGAVAGSKL-GASFFVSVSQ 432 (775)
T ss_pred CceEEEeCchhheeeeeecccCcEEEEecCCceEEEEEecCCcchhhhhhhhcccccc--cceeeeccc-CccEEEEecC
Confidence 3445889999999999966688899999999999999885432 45556778855 999999762 3468999999
Q ss_pred CCeEEEEeCCCCCCCCCC-ee----e--eecceeeEEEeeeeeccccccccCCCCcceeeccCCceeeecCCCCCC----
Q 021291 85 DGTVKCWDIENGGLSSNP-SL----T--IKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSK---- 153 (314)
Q Consensus 85 dg~v~iwd~~~~~~~~~~-~~----~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---- 153 (314)
|+++++|++...+....| .+ . .+....+...+++... ............+|++. ...+...+.+|..
T Consensus 433 D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~ndk-LiAT~SqDktaKiW~le-~~~l~~vLsGH~RGvw~ 510 (775)
T KOG0319|consen 433 DCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAPNDK-LIATGSQDKTAKIWDLE-QLRLLGVLSGHTRGVWC 510 (775)
T ss_pred CceEEEecCCCcccccccceehhhHHHHhhcccccceEecCCCc-eEEecccccceeeeccc-CceEEEEeeCCccceEE
Confidence 999999999863221111 11 1 1122222222222211 11222333445667777 5567778899988
Q ss_pred ceeccCCCceEEEeecCcCeEEEEecCCCceeeeecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEeecCCcE
Q 021291 154 DDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSI 233 (314)
Q Consensus 154 ~~~~~~~~~~~~~~g~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i 233 (314)
+.|+|..+ +++ +++.|++|+||.+.+..++.+|. || ...+..+. |-.+ |. .|++++.||.|
T Consensus 511 V~Fs~~dq-~la-T~SgD~TvKIW~is~fSClkT~e--------GH----~~aVlra~-F~~~---~~-qliS~~adGli 571 (775)
T KOG0319|consen 511 VSFSKNDQ-LLA-TCSGDKTVKIWSISTFSCLKTFE--------GH----TSAVLRAS-FIRN---GK-QLISAGADGLI 571 (775)
T ss_pred EEeccccc-eeE-eccCCceEEEEEeccceeeeeec--------Cc----cceeEeee-eeeC---Cc-EEEeccCCCcE
Confidence 89999875 444 66679999999999999999999 88 55777777 8877 44 89999999999
Q ss_pred EEEEccCCCCceEeeecCCcceEEEEEeCCCCeEEEecCCCcEEEEecCCC
Q 021291 234 LVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHS 284 (314)
Q Consensus 234 ~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~iw~~~~~ 284 (314)
++|++.+ +.++.++.+|.+.|++++.++...+++||+.||.|.+|.=.+.
T Consensus 572 KlWnikt-~eC~~tlD~H~DrvWaL~~~~~~~~~~tgg~Dg~i~~wkD~Te 621 (775)
T KOG0319|consen 572 KLWNIKT-NECEMTLDAHNDRVWALSVSPLLDMFVTGGGDGRIIFWKDVTE 621 (775)
T ss_pred EEEeccc-hhhhhhhhhccceeEEEeecCccceeEecCCCeEEEEeecCcH
Confidence 9999999 9999999999999999999999999999999999999965443
No 63
>PLN00181 protein SPA1-RELATED; Provisional
Probab=99.96 E-value=3.9e-27 Score=213.30 Aligned_cols=242 Identities=15% Similarity=0.235 Sum_probs=176.4
Q ss_pred eEEecCCCCceeEEEEcc-CCCEEEEecCCCeEEEEeCCCCeEEEEEeccCCcccEEEEEEcccCCCCeEEEeecCCeEE
Q 021291 11 VAVLRGHRASVTDVCFHQ-TKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVK 89 (314)
Q Consensus 11 ~~~l~~h~~~v~~~~~~~-~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~v~ 89 (314)
+..+.+ ...|.+++|++ ++.+|++++.||+|++||+.+++.+..+.+|... |++++|+|. ++.+|++|+.|++|+
T Consensus 526 ~~~~~~-~~~v~~l~~~~~~~~~las~~~Dg~v~lWd~~~~~~~~~~~~H~~~--V~~l~~~p~-~~~~L~Sgs~Dg~v~ 601 (793)
T PLN00181 526 VVELAS-RSKLSGICWNSYIKSQVASSNFEGVVQVWDVARSQLVTEMKEHEKR--VWSIDYSSA-DPTLLASGSDDGSVK 601 (793)
T ss_pred eEEecc-cCceeeEEeccCCCCEEEEEeCCCeEEEEECCCCeEEEEecCCCCC--EEEEEEcCC-CCCEEEEEcCCCEEE
Confidence 344443 46799999998 5789999999999999999999999999999854 999999963 568999999999999
Q ss_pred EEeCCCCCCCCCCeeeeecc-eeeEEEeeeeeccccccccCCCCcceeeccCCceeeecCCCCCC----ceeccCCCceE
Q 021291 90 CWDIENGGLSSNPSLTIKTN-SYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSK----DDVPAEGPKYM 164 (314)
Q Consensus 90 iwd~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~ 164 (314)
+||++++.... .+... ......+..............+...+|+++........+.+|.. +.|. ++.. +
T Consensus 602 iWd~~~~~~~~----~~~~~~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~-~~~~-l 675 (793)
T PLN00181 602 LWSINQGVSIG----TIKTKANICCVQFPSESGRSLAFGSADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFV-DSST-L 675 (793)
T ss_pred EEECCCCcEEE----EEecCCCeEEEEEeCCCCCEEEEEeCCCeEEEEECCCCCccceEecCCCCCEEEEEEe-CCCE-E
Confidence 99999876533 22222 11222222211223334445567788888766544445566765 6675 4443 3
Q ss_pred EEeecCcCeEEEEecCCC------ceeeeecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEeecCCcEEEEEc
Q 021291 165 AVAGEQLSEVEIWDLNTA------ERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDI 238 (314)
Q Consensus 165 ~~~g~~d~~i~vwd~~~~------~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~ 238 (314)
+ +++.|++|++||++.. ..+..+. +|. ..+..+. |+|+ +. +|++|+.|+.|++|+.
T Consensus 676 v-s~s~D~~ikiWd~~~~~~~~~~~~l~~~~--------gh~----~~i~~v~-~s~~---~~-~lasgs~D~~v~iw~~ 737 (793)
T PLN00181 676 V-SSSTDNTLKLWDLSMSISGINETPLHSFM--------GHT----NVKNFVG-LSVS---DG-YIATGSETNEVFVYHK 737 (793)
T ss_pred E-EEECCCEEEEEeCCCCccccCCcceEEEc--------CCC----CCeeEEE-EcCC---CC-EEEEEeCCCEEEEEEC
Confidence 3 5667999999999753 4555666 663 3556666 9998 44 9999999999999998
Q ss_pred cCCCCceEe-------------eecCCcceEEEEEeCCCCeEEEecCCCcEEEEec
Q 021291 239 RNPGIPLTA-------------MKVHLEPVLCLSIDESCNGGISGGADQKIVLYNL 281 (314)
Q Consensus 239 ~~~~~~~~~-------------~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~iw~~ 281 (314)
.. ..++.. ...|...|.+++|++++..|++|+.||.|+||++
T Consensus 738 ~~-~~~~~s~~~~~~~~~~~~~~~~~~~~V~~v~ws~~~~~lva~~~dG~I~i~~~ 792 (793)
T PLN00181 738 AF-PMPVLSYKFKTIDPVSGLEVDDASQFISSVCWRGQSSTLVAANSTGNIKILEM 792 (793)
T ss_pred CC-CCceEEEecccCCcccccccCCCCcEEEEEEEcCCCCeEEEecCCCcEEEEec
Confidence 75 333322 1234567999999999999999999999999996
No 64
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.96 E-value=4.2e-28 Score=188.01 Aligned_cols=246 Identities=18% Similarity=0.270 Sum_probs=188.8
Q ss_pred CceEEecCCCCceeEEEEccCCCEEEEecCCCeEEEEeCCCCeEEEEEeccCCcccEEEEEEcccCCCCeEEEeecCCeE
Q 021291 9 DPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTV 88 (314)
Q Consensus 9 ~~~~~l~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~v 88 (314)
+.+.+|.|-.++|+.+.|.++++++++++.|+.+++|++...+...++.+|... |+++.|.. ....+++|+.|.+|
T Consensus 210 ~~~~tLaGs~g~it~~d~d~~~~~~iAas~d~~~r~Wnvd~~r~~~TLsGHtdk--Vt~ak~~~--~~~~vVsgs~DRti 285 (459)
T KOG0288|consen 210 ELISTLAGSLGNITSIDFDSDNKHVIAASNDKNLRLWNVDSLRLRHTLSGHTDK--VTAAKFKL--SHSRVVSGSADRTI 285 (459)
T ss_pred hhhhhhhccCCCcceeeecCCCceEEeecCCCceeeeeccchhhhhhhcccccc--eeeehhhc--cccceeeccccchh
Confidence 477889999999999999999999999999999999999999999999999955 99999988 65669999999999
Q ss_pred EEEeCCCCCCCCCCeeeeecceeeEEEeeeeeccccccccCCCCcceeeccCCceeeecCCCC-CC-ceeccCCCceEEE
Q 021291 89 KCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCD-SK-DDVPAEGPKYMAV 166 (314)
Q Consensus 89 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~ 166 (314)
++||+....|.+.+........+..... .....-.......|+++..........+. -. +..++++..++
T Consensus 286 K~WDl~k~~C~kt~l~~S~cnDI~~~~~------~~~SgH~DkkvRfwD~Rs~~~~~sv~~gg~vtSl~ls~~g~~lL-- 357 (459)
T KOG0288|consen 286 KLWDLQKAYCSKTVLPGSQCNDIVCSIS------DVISGHFDKKVRFWDIRSADKTRSVPLGGRVTSLDLSMDGLELL-- 357 (459)
T ss_pred hhhhhhhhheeccccccccccceEecce------eeeecccccceEEEeccCCceeeEeecCcceeeEeeccCCeEEe--
Confidence 9999999888765443333332222111 11112223346677776655443332222 22 88899998777
Q ss_pred eecCcCeEEEEecCCCceeeeecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEeecCCcEEEEEccCCCCceE
Q 021291 167 AGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLT 246 (314)
Q Consensus 167 ~g~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~~ 246 (314)
+++.|.++.+.|+++.+....+.. .......-...+. |+|+ +. |+++|+.||.|+||++.+ +++..
T Consensus 358 sssRDdtl~viDlRt~eI~~~~sA--------~g~k~asDwtrvv-fSpd---~~-YvaAGS~dgsv~iW~v~t-gKlE~ 423 (459)
T KOG0288|consen 358 SSSRDDTLKVIDLRTKEIRQTFSA--------EGFKCASDWTRVV-FSPD---GS-YVAAGSADGSVYIWSVFT-GKLEK 423 (459)
T ss_pred eecCCCceeeeecccccEEEEeec--------cccccccccceeE-ECCC---Cc-eeeeccCCCcEEEEEccC-ceEEE
Confidence 457789999999999998887762 2121222355565 9998 44 999999999999999998 88877
Q ss_pred eeecCCc--ceEEEEEeCCCCeEEEecCCCcEEEEe
Q 021291 247 AMKVHLE--PVLCLSIDESCNGGISGGADQKIVLYN 280 (314)
Q Consensus 247 ~~~~h~~--~v~~~~~~~~~~~l~s~s~dg~i~iw~ 280 (314)
.+..... .|++++|+|.|..|++++.++.+.+|.
T Consensus 424 ~l~~s~s~~aI~s~~W~~sG~~Llsadk~~~v~lW~ 459 (459)
T KOG0288|consen 424 VLSLSTSNAAITSLSWNPSGSGLLSADKQKAVTLWT 459 (459)
T ss_pred EeccCCCCcceEEEEEcCCCchhhcccCCcceEecC
Confidence 7775544 599999999999999999999999993
No 65
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.96 E-value=7.2e-28 Score=186.76 Aligned_cols=272 Identities=15% Similarity=0.207 Sum_probs=202.6
Q ss_pred CCCCCceEEecCCCCceeEEEEccCCCEEEEecCCCeEEEEeCCCCe--EEEEEeccCCcccEEEEEEcccCCCCeEEEe
Q 021291 5 PPPPDPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHR--TVSSSWVHSAAHGIVSVATGPSIGLNKVISQ 82 (314)
Q Consensus 5 ~~~~~~~~~l~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~ 82 (314)
..|......+..|.+.|..+.|-++...|++|+.|..|++|++...+ .+.++.+.. ++|+.+.|.+ ++..++++
T Consensus 162 ~lpS~~~~~ld~h~gev~~v~~l~~sdtlatgg~Dr~Ik~W~v~~~k~~~~~tLaGs~--g~it~~d~d~--~~~~~iAa 237 (459)
T KOG0288|consen 162 TLPSRALFVLDAHEGEVHDVEFLRNSDTLATGGSDRIIKLWNVLGEKSELISTLAGSL--GNITSIDFDS--DNKHVIAA 237 (459)
T ss_pred ccchhhhhhhhccccccceeEEccCcchhhhcchhhhhhhhhcccchhhhhhhhhccC--CCcceeeecC--CCceEEee
Confidence 35667778889999999999999988899999999999999987665 566777776 4499999999 99999999
Q ss_pred ecCCeEEEEeCCCCCCCCCCeeeeecceeeEEEeeeeeccccccccCCCCcceeeccCCceeeecCCCCCC--ceeccCC
Q 021291 83 GRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSK--DDVPAEG 160 (314)
Q Consensus 83 ~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~ 160 (314)
+.|+.+++|++...+... .++.+........+...... .......-....|++.........+.+... ++.+ .
T Consensus 238 s~d~~~r~Wnvd~~r~~~--TLsGHtdkVt~ak~~~~~~~-vVsgs~DRtiK~WDl~k~~C~kt~l~~S~cnDI~~~--~ 312 (459)
T KOG0288|consen 238 SNDKNLRLWNVDSLRLRH--TLSGHTDKVTAAKFKLSHSR-VVSGSADRTIKLWDLQKAYCSKTVLPGSQCNDIVCS--I 312 (459)
T ss_pred cCCCceeeeeccchhhhh--hhcccccceeeehhhccccc-eeeccccchhhhhhhhhhheeccccccccccceEec--c
Confidence 999999999999887654 33443333333322222111 333444455677888777766666666555 4443 2
Q ss_pred CceEEEeecCcCeEEEEecCCCceeeeecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEeecCCcEEEEEccC
Q 021291 161 PKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRN 240 (314)
Q Consensus 161 ~~~~~~~g~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~ 240 (314)
..+++|..|++|++||.++..+....+ ..+.+.++. .+++ |. .+.+.+.|.++.+.|+++
T Consensus 313 --~~~~SgH~DkkvRfwD~Rs~~~~~sv~-------------~gg~vtSl~-ls~~---g~-~lLsssRDdtl~viDlRt 372 (459)
T KOG0288|consen 313 --SDVISGHFDKKVRFWDIRSADKTRSVP-------------LGGRVTSLD-LSMD---GL-ELLSSSRDDTLKVIDLRT 372 (459)
T ss_pred --eeeeecccccceEEEeccCCceeeEee-------------cCcceeeEe-eccC---Ce-EEeeecCCCceeeeeccc
Confidence 234489999999999999999988887 345788887 8887 54 677779999999999998
Q ss_pred CCCceEeeecC----CcceEEEEEeCCCCeEEEecCCCcEEEEecCCCeeeEeeeeeeecCCCceeceeecc
Q 021291 241 PGIPLTAMKVH----LEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTYVLFGIGFVCDQEGNKFGTTWHI 308 (314)
Q Consensus 241 ~~~~~~~~~~h----~~~v~~~~~~~~~~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~w~~ 308 (314)
......+.+- ....+.+.|+|++.|+++||.||.|+||++.+++.......-... ..++..+|.+
T Consensus 373 -~eI~~~~sA~g~k~asDwtrvvfSpd~~YvaAGS~dgsv~iW~v~tgKlE~~l~~s~s~--~aI~s~~W~~ 441 (459)
T KOG0288|consen 373 -KEIRQTFSAEGFKCASDWTRVVFSPDGSYVAAGSADGSVYIWSVFTGKLEKVLSLSTSN--AAITSLSWNP 441 (459)
T ss_pred -ccEEEEeeccccccccccceeEECCCCceeeeccCCCcEEEEEccCceEEEEeccCCCC--cceEEEEEcC
Confidence 6655555532 234788999999999999999999999999999987764332211 1455555543
No 66
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=99.96 E-value=2.7e-27 Score=178.83 Aligned_cols=246 Identities=12% Similarity=0.167 Sum_probs=184.6
Q ss_pred CCCCceeEEEEccCCCEEEEecCCCeEEEEeCCCCeEEEEEe--------ccCCcccEEEEEEcccCCCCeEEEeecCCe
Q 021291 16 GHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSW--------VHSAAHGIVSVATGPSIGLNKVISQGRDGT 87 (314)
Q Consensus 16 ~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~--------~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~ 87 (314)
|..+.+.|..|+|||++|++|+.||-|.+||..+|+..+.++ .+. ++|.|+.|+. |...+++|+.||.
T Consensus 211 g~KSh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd--~aVlci~FSR--DsEMlAsGsqDGk 286 (508)
T KOG0275|consen 211 GQKSHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMD--DAVLCISFSR--DSEMLASGSQDGK 286 (508)
T ss_pred ccccchhheeeCCCCceEeeccccceeeeehhccchhhhhhhhhhhcceeecc--cceEEEeecc--cHHHhhccCcCCc
Confidence 456778899999999999999999999999999987655443 344 4599999999 9999999999999
Q ss_pred EEEEeCCCCCCCCCCeee-eecceeeEEEeeeeeccccccccCCCCcceeeccCCc--eeeecCCCCCC----ceeccCC
Q 021291 88 VKCWDIENGGLSSNPSLT-IKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGE--TVDTDSLCDSK----DDVPAEG 160 (314)
Q Consensus 88 v~iwd~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~----~~~~~~~ 160 (314)
|++|.++++.|++ .+. .+........|+-+.+. ...++......+...+ .....+.+|.. ..|.++|
T Consensus 287 IKvWri~tG~ClR--rFdrAHtkGvt~l~FSrD~Sq----iLS~sfD~tvRiHGlKSGK~LKEfrGHsSyvn~a~ft~dG 360 (508)
T KOG0275|consen 287 IKVWRIETGQCLR--RFDRAHTKGVTCLSFSRDNSQ----ILSASFDQTVRIHGLKSGKCLKEFRGHSSYVNEATFTDDG 360 (508)
T ss_pred EEEEEEecchHHH--HhhhhhccCeeEEEEccCcch----hhcccccceEEEeccccchhHHHhcCccccccceEEcCCC
Confidence 9999999999876 222 23333333334333322 2222333333332222 33456788887 8899999
Q ss_pred CceEEEeecCcCeEEEEecCCCceeeeecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEeecCCcEEEEEccC
Q 021291 161 PKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRN 240 (314)
Q Consensus 161 ~~~~~~~g~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~ 240 (314)
.+++ +++.||+|++|+.++.+++.+|+.. + ....+.++. .-|..+. .++++...++|+|.++.
T Consensus 361 ~~ii--saSsDgtvkvW~~KtteC~~Tfk~~------~----~d~~vnsv~-~~PKnpe---h~iVCNrsntv~imn~q- 423 (508)
T KOG0275|consen 361 HHII--SASSDGTVKVWHGKTTECLSTFKPL------G----TDYPVNSVI-LLPKNPE---HFIVCNRSNTVYIMNMQ- 423 (508)
T ss_pred CeEE--EecCCccEEEecCcchhhhhhccCC------C----CcccceeEE-EcCCCCc---eEEEEcCCCeEEEEecc-
Confidence 8876 5666999999999999999999842 1 233566666 7776542 78888899999999998
Q ss_pred CCCceEeeecC---CcceEEEEEeCCCCeEEEecCCCcEEEEecCCCeeeEe
Q 021291 241 PGIPLTAMKVH---LEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTYVLF 289 (314)
Q Consensus 241 ~~~~~~~~~~h---~~~v~~~~~~~~~~~l~s~s~dg~i~iw~~~~~~~~~~ 289 (314)
++.++.+... .+...+...+|.|.++...+.|+.++.|.+.+|+.-.+
T Consensus 424 -GQvVrsfsSGkREgGdFi~~~lSpkGewiYcigED~vlYCF~~~sG~LE~t 474 (508)
T KOG0275|consen 424 -GQVVRSFSSGKREGGDFINAILSPKGEWIYCIGEDGVLYCFSVLSGKLERT 474 (508)
T ss_pred -ceEEeeeccCCccCCceEEEEecCCCcEEEEEccCcEEEEEEeecCceeee
Confidence 7888887632 23556677899999999999999999999999986554
No 67
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=8.7e-27 Score=184.34 Aligned_cols=244 Identities=18% Similarity=0.281 Sum_probs=195.2
Q ss_pred CCceeEEEEccCCC-EEEEecCCCeEEEEeCCCCeEEEEEeccCCcccEEEEEEcccCCCCeEEEeecCCeEEEEeCCCC
Q 021291 18 RASVTDVCFHQTKP-ILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENG 96 (314)
Q Consensus 18 ~~~v~~~~~~~~~~-~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~ 96 (314)
.+.|.+++|+|... -+|+.+. -.+.||+..+....+++.-.. ..|.++.|.. ||.+|++|+..|.|+|||+.+.
T Consensus 26 ~~~vssl~fsp~~P~d~aVt~S-~rvqly~~~~~~~~k~~srFk--~~v~s~~fR~--DG~LlaaGD~sG~V~vfD~k~r 100 (487)
T KOG0310|consen 26 HNSVSSLCFSPKHPYDFAVTSS-VRVQLYSSVTRSVRKTFSRFK--DVVYSVDFRS--DGRLLAAGDESGHVKVFDMKSR 100 (487)
T ss_pred cCcceeEecCCCCCCceEEecc-cEEEEEecchhhhhhhHHhhc--cceeEEEeec--CCeEEEccCCcCcEEEeccccH
Confidence 46899999999443 3444443 369999988776666665555 4499999999 9999999999999999997764
Q ss_pred CCCCCCeeeeecceeeEEEeeeeeccccccccCCCCcceeeccCCceeeecCCCCCC----ceeccCCCceEEEeecCcC
Q 021291 97 GLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSK----DDVPAEGPKYMAVAGEQLS 172 (314)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~g~~d~ 172 (314)
..++ .+..+..+.+...|++..........++....+|++..... ...+.+|.+ .+|+|...++++ +|+.||
T Consensus 101 ~iLR--~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v-~~~l~~htDYVR~g~~~~~~~hivv-tGsYDg 176 (487)
T KOG0310|consen 101 VILR--QLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYV-QAELSGHTDYVRCGDISPANDHIVV-TGSYDG 176 (487)
T ss_pred HHHH--HHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCcEE-EEEecCCcceeEeeccccCCCeEEE-ecCCCc
Confidence 4433 45566677788888888777777888888889999988875 668888988 889999887765 799999
Q ss_pred eEEEEecCCC-ceeeeecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEeecCCcEEEEEccCCCCceEeeecC
Q 021291 173 EVEIWDLNTA-ERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVH 251 (314)
Q Consensus 173 ~i~vwd~~~~-~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~h 251 (314)
.|++||++.. ..+..+. | ..++-.+. |-|. |. .|++++. ..|+|||+..+++.+..+..|
T Consensus 177 ~vrl~DtR~~~~~v~eln---------h----g~pVe~vl-~lps---gs-~iasAgG-n~vkVWDl~~G~qll~~~~~H 237 (487)
T KOG0310|consen 177 KVRLWDTRSLTSRVVELN---------H----GCPVESVL-ALPS---GS-LIASAGG-NSVKVWDLTTGGQLLTSMFNH 237 (487)
T ss_pred eEEEEEeccCCceeEEec---------C----CCceeeEE-EcCC---CC-EEEEcCC-CeEEEEEecCCceehhhhhcc
Confidence 9999999987 6666665 3 33666676 8887 44 6777764 589999999867877777779
Q ss_pred CcceEEEEEeCCCCeEEEecCCCcEEEEecCCCeeeEe
Q 021291 252 LEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTYVLF 289 (314)
Q Consensus 252 ~~~v~~~~~~~~~~~l~s~s~dg~i~iw~~~~~~~~~~ 289 (314)
...|+|+++..++..|+|||-|+.|++||+.+-+.+..
T Consensus 238 ~KtVTcL~l~s~~~rLlS~sLD~~VKVfd~t~~Kvv~s 275 (487)
T KOG0310|consen 238 NKTVTCLRLASDSTRLLSGSLDRHVKVFDTTNYKVVHS 275 (487)
T ss_pred cceEEEEEeecCCceEeecccccceEEEEccceEEEEe
Confidence 99999999998999999999999999999887776653
No 68
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=2.5e-26 Score=187.85 Aligned_cols=242 Identities=17% Similarity=0.234 Sum_probs=189.6
Q ss_pred ecCCCCceeEEEEccCCCEEEEecCCCeEEEEeCCCCeEEEEEec-cCCcccEEEEEEcccCCCCeEEEeecCCeEEEEe
Q 021291 14 LRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWV-HSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWD 92 (314)
Q Consensus 14 l~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd 92 (314)
..-+...|+++.|+++|.+|++|..+|.|.|||..+.+.+..+.+ |. ..|-+++|.. ..+.+|+.|+.|..+|
T Consensus 213 ~~~~~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k~~~~~~~~h~--~rvg~laW~~----~~lssGsr~~~I~~~d 286 (484)
T KOG0305|consen 213 CSFGEELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQKKTRTLRGSHA--SRVGSLAWNS----SVLSSGSRDGKILNHD 286 (484)
T ss_pred EecCCCceEEEEECCCCCEEEEeecCCeEEEEehhhccccccccCCcC--ceeEEEeccC----ceEEEecCCCcEEEEE
Confidence 333488999999999999999999999999999999999999988 76 5699999976 8999999999999999
Q ss_pred CCCCCCCCCCeeeeecceeeEEEeeeeeccccccccCCCCc---ceeeccCCceeeecCCCCCC----ceeccCCCceEE
Q 021291 93 IENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPK---DCYEREVGETVDTDSLCDSK----DDVPAEGPKYMA 165 (314)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~ 165 (314)
++..+.... .+..+....|.+.. .......+.++.. .+|+. ....+...+..|.. ++|+|-...+||
T Consensus 287 vR~~~~~~~---~~~~H~qeVCgLkw--s~d~~~lASGgnDN~~~Iwd~-~~~~p~~~~~~H~aAVKA~awcP~q~~lLA 360 (484)
T KOG0305|consen 287 VRISQHVVS---TLQGHRQEVCGLKW--SPDGNQLASGGNDNVVFIWDG-LSPEPKFTFTEHTAAVKALAWCPWQSGLLA 360 (484)
T ss_pred Eecchhhhh---hhhcccceeeeeEE--CCCCCeeccCCCccceEeccC-CCccccEEEeccceeeeEeeeCCCccCceE
Confidence 998865442 24444444444332 3333344444443 34444 22334445556665 999999988888
Q ss_pred Eee-cCcCeEEEEecCCCceeeeecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEeecCCcEEEEEccCCCCc
Q 021291 166 VAG-EQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIP 244 (314)
Q Consensus 166 ~~g-~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~ 244 (314)
+.| +.|+.|++||..++..+..+. ..+.+.++. |++.. ++....-|..++.|.||+..+ .++
T Consensus 361 sGGGs~D~~i~fwn~~~g~~i~~vd-------------tgsQVcsL~-Wsk~~--kEi~sthG~s~n~i~lw~~ps-~~~ 423 (484)
T KOG0305|consen 361 TGGGSADRCIKFWNTNTGARIDSVD-------------TGSQVCSLI-WSKKY--KELLSTHGYSENQITLWKYPS-MKL 423 (484)
T ss_pred EcCCCcccEEEEEEcCCCcEecccc-------------cCCceeeEE-EcCCC--CEEEEecCCCCCcEEEEeccc-cce
Confidence 653 569999999999999887776 245688887 99983 332344567788999999998 888
Q ss_pred eEeeecCCcceEEEEEeCCCCeEEEecCCCcEEEEecCCC
Q 021291 245 LTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHS 284 (314)
Q Consensus 245 ~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~iw~~~~~ 284 (314)
+..+.+|...|..++++|+|..+++|+.|.++++|++-..
T Consensus 424 ~~~l~gH~~RVl~la~SPdg~~i~t~a~DETlrfw~~f~~ 463 (484)
T KOG0305|consen 424 VAELLGHTSRVLYLALSPDGETIVTGAADETLRFWNLFDE 463 (484)
T ss_pred eeeecCCcceeEEEEECCCCCEEEEecccCcEEeccccCC
Confidence 9999999999999999999999999999999999998764
No 69
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.95 E-value=5.9e-26 Score=169.59 Aligned_cols=266 Identities=17% Similarity=0.233 Sum_probs=162.2
Q ss_pred ecCCCCceeEEEEcc-CCCEEEEecCCCeEEEEeCCC-CeEE-EEEeccCCcccEEEEEEcccCCCCeEEEeecCCeEEE
Q 021291 14 LRGHRASVTDVCFHQ-TKPILFAGTTGGELRIWDTVQ-HRTV-SSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKC 90 (314)
Q Consensus 14 l~~h~~~v~~~~~~~-~~~~l~s~~~dg~v~iwd~~~-~~~~-~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~v~i 90 (314)
-....+.|.+|+||| ...+++.+|.||+||+|+++. |... +....|. .+|.+++|+. +|..+++|+.|+.+++
T Consensus 23 ~~pP~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~ka~~~~~--~PvL~v~Wsd--dgskVf~g~~Dk~~k~ 98 (347)
T KOG0647|consen 23 PNPPEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVPKAQQSHD--GPVLDVCWSD--DGSKVFSGGCDKQAKL 98 (347)
T ss_pred CCCcccchheeEeccccCceEEecccCCceEEEEEecCCcccchhhhccC--CCeEEEEEcc--CCceEEeeccCCceEE
Confidence 345678999999999 566777999999999999986 3332 2333455 5599999999 9999999999999999
Q ss_pred EeCCCCCCCCCCeeeeecceeeEEEeeeeec-cccccccCCCCcceeeccCCceeeecCCCCCCceeccCCCceEEEeec
Q 021291 91 WDIENGGLSSNPSLTIKTNSYHFCKLSLVKE-PYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGE 169 (314)
Q Consensus 91 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 169 (314)
||+.+++.. .+..+..+...+.+-.... .......-....+.|+.+....+...... +-++..|-.+-+++.+.
T Consensus 99 wDL~S~Q~~---~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~LP--eRvYa~Dv~~pm~vVat 173 (347)
T KOG0647|consen 99 WDLASGQVS---QVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQLP--ERVYAADVLYPMAVVAT 173 (347)
T ss_pred EEccCCCee---eeeecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeeecc--ceeeehhccCceeEEEe
Confidence 999999643 2344444444443221110 01111111122233333322211110000 02233333222222333
Q ss_pred CcCeEEEEecCCCceeeeecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEeecCCcEEEEEccCCC-CceEee
Q 021291 170 QLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPG-IPLTAM 248 (314)
Q Consensus 170 ~d~~i~vwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~-~~~~~~ 248 (314)
.++.|.+|+++++... ++ .+..+.+-.+.+++ ..++ +. ..+.|+-+|.+.+..++.+. ..-.++
T Consensus 174 a~r~i~vynL~n~~te--~k--------~~~SpLk~Q~R~va-~f~d---~~-~~alGsiEGrv~iq~id~~~~~~nFtF 238 (347)
T KOG0647|consen 174 AERHIAVYNLENPPTE--FK--------RIESPLKWQTRCVA-CFQD---KD-GFALGSIEGRVAIQYIDDPNPKDNFTF 238 (347)
T ss_pred cCCcEEEEEcCCCcch--hh--------hhcCcccceeeEEE-EEec---CC-ceEeeeecceEEEEecCCCCccCceeE
Confidence 3344444444332211 11 22233444566776 4444 22 46999999999999988621 334566
Q ss_pred ecCCc---------ceEEEEEeCCCCeEEEecCCCcEEEEecCCCeeeEe-------eeeeeecCCCceec
Q 021291 249 KVHLE---------PVLCLSIDESCNGGISGGADQKIVLYNLDHSTYVLF-------GIGFVCDQEGNKFG 303 (314)
Q Consensus 249 ~~h~~---------~v~~~~~~~~~~~l~s~s~dg~i~iw~~~~~~~~~~-------~~~~~~~~~~~~~~ 303 (314)
+.|.. .|++|+|+|....|+|++.||++.+||-+...++.. +...++..+|.+|+
T Consensus 239 kCHR~~~~~~~~VYaVNsi~FhP~hgtlvTaGsDGtf~FWDkdar~kLk~s~~~~qpItcc~fn~~G~ifa 309 (347)
T KOG0647|consen 239 KCHRSTNSVNDDVYAVNSIAFHPVHGTLVTAGSDGTFSFWDKDARTKLKTSETHPQPITCCSFNRNGSIFA 309 (347)
T ss_pred EEeccCCCCCCceEEecceEeecccceEEEecCCceEEEecchhhhhhhccCcCCCccceeEecCCCCEEE
Confidence 67763 588999999999999999999999999887776654 34455678887765
No 70
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.95 E-value=1.2e-26 Score=172.92 Aligned_cols=213 Identities=22% Similarity=0.308 Sum_probs=164.6
Q ss_pred ecCCCCceeEEEEcc-CCCEEEEecCCCeEEEEeCCCCe----------EEEEE-----eccCCcccEEEEEEcccCCCC
Q 021291 14 LRGHRASVTDVCFHQ-TKPILFAGTTGGELRIWDTVQHR----------TVSSS-----WVHSAAHGIVSVATGPSIGLN 77 (314)
Q Consensus 14 l~~h~~~v~~~~~~~-~~~~l~s~~~dg~v~iwd~~~~~----------~~~~~-----~~~~~~~~v~~~~~~~~~~~~ 77 (314)
.+.|.+.|+++...+ .|+++++|+.||.|.|||+++.. .+..+ .+|. -.|.++.|-|. |..
T Consensus 39 ~r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hk--y~iss~~WyP~-DtG 115 (397)
T KOG4283|consen 39 VRPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHK--YAISSAIWYPI-DTG 115 (397)
T ss_pred eccCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccce--eeeeeeEEeee-cCc
Confidence 356999999999999 89999999999999999997632 11111 2344 44999999997 668
Q ss_pred eEEEeecCCeEEEEeCCCCCCCCCCeeeeecceeeEEEeeeeeccccccccCCCCcceeeccCCceeeecCCCCCCceec
Q 021291 78 KVISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVP 157 (314)
Q Consensus 78 ~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (314)
.|.+++.|.++++||.++.+... .+++...-. + -+++
T Consensus 116 mFtssSFDhtlKVWDtnTlQ~a~--~F~me~~VY-----s------------------------------------hamS 152 (397)
T KOG4283|consen 116 MFTSSSFDHTLKVWDTNTLQEAV--DFKMEGKVY-----S------------------------------------HAMS 152 (397)
T ss_pred eeecccccceEEEeecccceeeE--EeecCceee-----h------------------------------------hhcC
Confidence 89999999999999999875422 222221111 1 2244
Q ss_pred cCC-CceEEEeecCcCeEEEEecCCCceeeeecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEeecCCcEEEE
Q 021291 158 AEG-PKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVW 236 (314)
Q Consensus 158 ~~~-~~~~~~~g~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vw 236 (314)
|-. .+.++++|..|-.|++-|+.+|.....+. || +..++++. |+|. .+..|++|+.||.|++|
T Consensus 153 p~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~Ls--------GH----r~~vlaV~-Wsp~---~e~vLatgsaDg~irlW 216 (397)
T KOG4283|consen 153 PMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLS--------GH----RDGVLAVE-WSPS---SEWVLATGSADGAIRLW 216 (397)
T ss_pred hhhhcceEEEEecCCCcEEEEeccCCcceeeec--------cc----cCceEEEE-eccC---ceeEEEecCCCceEEEE
Confidence 433 24566689989999999999999999998 88 56889998 9997 55589999999999999
Q ss_pred EccCCCCceEee--------------ecCCcceEEEEEeCCCCeEEEecCCCcEEEEecCCCeeeE
Q 021291 237 DIRNPGIPLTAM--------------KVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTYVL 288 (314)
Q Consensus 237 d~~~~~~~~~~~--------------~~h~~~v~~~~~~~~~~~l~s~s~dg~i~iw~~~~~~~~~ 288 (314)
|++.-..+...+ .+|.+.|+.++|..++.++++++.|..+++|+..+|+...
T Consensus 217 DiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~gtd~r~r~wn~~~G~ntl 282 (397)
T KOG4283|consen 217 DIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLASCGTDDRIRVWNMESGRNTL 282 (397)
T ss_pred EeecccceeEEeecccCccCccccccccccceeeeeeecccchhhhhccCccceEEeecccCcccc
Confidence 998532333333 3567789999999999999999999999999999887554
No 71
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.95 E-value=2.2e-26 Score=180.55 Aligned_cols=249 Identities=14% Similarity=0.150 Sum_probs=194.3
Q ss_pred cCCCCceeEEEEccC-CCEEEEecCCCeEEEEeCCCCe----------EEEEEeccCCcccEEEEEEcccCCCCeEEEee
Q 021291 15 RGHRASVTDVCFHQT-KPILFAGTTGGELRIWDTVQHR----------TVSSSWVHSAAHGIVSVATGPSIGLNKVISQG 83 (314)
Q Consensus 15 ~~h~~~v~~~~~~~~-~~~l~s~~~dg~v~iwd~~~~~----------~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~ 83 (314)
--|.+.|+.+.+.|+ ..++|+.+..+.|.|||..+.. .-.++.+|... -++|+|++. ....|++++
T Consensus 121 i~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~e--g~glsWn~~-~~g~Lls~~ 197 (422)
T KOG0264|consen 121 INHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKE--GYGLSWNRQ-QEGTLLSGS 197 (422)
T ss_pred ccCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeeccc--ccccccccc-cceeEeecc
Confidence 359999999999994 5678888999999999976531 12267888854 688999985 446899999
Q ss_pred cCCeEEEEeCCCCCCC-----CCCeeeeecceeeEEEeeeeeccccccccCCCCcceeeccC-CceeeecCCCCCC----
Q 021291 84 RDGTVKCWDIENGGLS-----SNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREV-GETVDTDSLCDSK---- 153 (314)
Q Consensus 84 ~dg~v~iwd~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~---- 153 (314)
.|++|++||+...... .+..+..+......+.+.+...........++...+|+.+. .........+|..
T Consensus 198 ~d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~~~~~~~ah~~~vn~ 277 (422)
T KOG0264|consen 198 DDHTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSKPSHSVKAHSAEVNC 277 (422)
T ss_pred CCCcEEEEeccccccCCccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCCCCCCcccccccCCceeE
Confidence 9999999999765431 12234445556666777777777778888889999999987 3344555666766
Q ss_pred ceeccCCCceEEEeecCcCeEEEEecCCCc-eeeeecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEeecCCc
Q 021291 154 DDVPAEGPKYMAVAGEQLSEVEIWDLNTAE-RCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGS 232 (314)
Q Consensus 154 ~~~~~~~~~~~~~~g~~d~~i~vwd~~~~~-~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~ 232 (314)
++|+|.+.+++| +|+.|++|.+||+|+.. ++.++. +| ...+.++. |+|.. ...|++++.|+.
T Consensus 278 ~~fnp~~~~ilA-T~S~D~tV~LwDlRnL~~~lh~~e--------~H----~dev~~V~-WSPh~---etvLASSg~D~r 340 (422)
T KOG0264|consen 278 VAFNPFNEFILA-TGSADKTVALWDLRNLNKPLHTFE--------GH----EDEVFQVE-WSPHN---ETVLASSGTDRR 340 (422)
T ss_pred EEeCCCCCceEE-eccCCCcEEEeechhcccCceecc--------CC----CcceEEEE-eCCCC---CceeEecccCCc
Confidence 999999988776 67779999999999765 556666 66 55789998 99983 339999999999
Q ss_pred EEEEEccCCC-------------CceEeeecCCcceEEEEEeCCCCe-EEEecCCCcEEEEecCC
Q 021291 233 ILVWDIRNPG-------------IPLTAMKVHLEPVLCLSIDESCNG-GISGGADQKIVLYNLDH 283 (314)
Q Consensus 233 i~vwd~~~~~-------------~~~~~~~~h~~~v~~~~~~~~~~~-l~s~s~dg~i~iw~~~~ 283 (314)
+.|||+..-+ +++....||...|..+.|+|+..+ |+|.+.|+.+.||++..
T Consensus 341 l~vWDls~ig~eq~~eda~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s~ 405 (422)
T KOG0264|consen 341 LNVWDLSRIGEEQSPEDAEDGPPELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDNILQIWQMAE 405 (422)
T ss_pred EEEEeccccccccChhhhccCCcceeEEecCcccccccccCCCCCCeEEEEecCCceEEEeeccc
Confidence 9999996422 234666799999999999998775 68889999999999873
No 72
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=7.4e-27 Score=175.93 Aligned_cols=245 Identities=15% Similarity=0.190 Sum_probs=180.7
Q ss_pred CceEEecCCCCceeEEEEccCCCEEEEecCCCeEEEEeCCCCeEEEEEeccCCcccEEEEEEcccCCCCeEEEeecCCeE
Q 021291 9 DPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTV 88 (314)
Q Consensus 9 ~~~~~l~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~v 88 (314)
+.++.|.||.+.|+.++-......+.+++.|.+.+||.+++++|+..+.+|.+. |.+++|++ .+.++++++.|++-
T Consensus 139 ~lvre~~GHkDGiW~Vaa~~tqpi~gtASADhTA~iWs~Esg~CL~~Y~GH~GS--VNsikfh~--s~~L~lTaSGD~ta 214 (481)
T KOG0300|consen 139 RLVRELEGHKDGIWHVAADSTQPICGTASADHTARIWSLESGACLATYTGHTGS--VNSIKFHN--SGLLLLTASGDETA 214 (481)
T ss_pred eehhhhcccccceeeehhhcCCcceeecccccceeEEeeccccceeeecccccc--eeeEEecc--ccceEEEccCCcch
Confidence 567788899999999999887779999999999999999999999999999965 99999999 88999999999999
Q ss_pred EEEeCCCCCCCCCCee--eeecceeeEEEeeeeeccccccccCCCCcceeeccCCceeeecCCCCCC----ceeccCCCc
Q 021291 89 KCWDIENGGLSSNPSL--TIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSK----DDVPAEGPK 162 (314)
Q Consensus 89 ~iwd~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~ 162 (314)
.||...-.-.+.++.- .........+. +.... ........+-...+.+...+.+|.. ..|...|+.
T Consensus 215 HIW~~av~~~vP~~~a~~~hSsEeE~e~s---De~~~-----d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~gg~Q 286 (481)
T KOG0300|consen 215 HIWKAAVNWEVPSNNAPSDHSSEEEEEHS---DEHNR-----DTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLAGGQQ 286 (481)
T ss_pred HHHHHhhcCcCCCCCCCCCCCchhhhhcc---ccccc-----ccccccccCCceeeeeeeeeeccccceEehhhhcCcce
Confidence 9997432111100000 00000000000 00000 0000001111123455666778877 557777776
Q ss_pred eEEEeecCcCeEEEEecCCCceeeeecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEeecCCcEEEEEccCCC
Q 021291 163 YMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPG 242 (314)
Q Consensus 163 ~~~~~g~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~ 242 (314)
++ +++.|.+..+||+++++.+..+. ||..+... +. -+|. .+ ++++.+.|-+.++||++..-
T Consensus 287 ~v--TaSWDRTAnlwDVEtge~v~~Lt--------GHd~ELtH----cs-tHpt---Qr-LVvTsSrDtTFRLWDFReaI 347 (481)
T KOG0300|consen 287 MV--TASWDRTANLWDVETGEVVNILT--------GHDSELTH----CS-THPT---QR-LVVTSSRDTTFRLWDFREAI 347 (481)
T ss_pred ee--eeeccccceeeeeccCceecccc--------Ccchhccc----cc-cCCc---ce-EEEEeccCceeEeccchhhc
Confidence 55 78999999999999999999998 88654433 22 6665 33 89999999999999999755
Q ss_pred CceEeeecCCcceEEEEEeCCCCeEEEecCCCcEEEEecCCCe
Q 021291 243 IPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHST 285 (314)
Q Consensus 243 ~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~iw~~~~~~ 285 (314)
+.+..++||.+.|+++.|..+.+ +++||.|.+|++||+++-+
T Consensus 348 ~sV~VFQGHtdtVTS~vF~~dd~-vVSgSDDrTvKvWdLrNMR 389 (481)
T KOG0300|consen 348 QSVAVFQGHTDTVTSVVFNTDDR-VVSGSDDRTVKVWDLRNMR 389 (481)
T ss_pred ceeeeecccccceeEEEEecCCc-eeecCCCceEEEeeecccc
Confidence 67888999999999999987765 8999999999999997654
No 73
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.95 E-value=5.9e-26 Score=178.46 Aligned_cols=218 Identities=18% Similarity=0.290 Sum_probs=167.3
Q ss_pred cCCCCceeEEEEccCCCEEEEecCCCeEEEEeCCCCeEEEEEeccCCcccEEEEEEcccCCCCeEEEeecCCeEEEEeCC
Q 021291 15 RGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIE 94 (314)
Q Consensus 15 ~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd~~ 94 (314)
++|.+.|.+++.++||+|||+|+.|..|.||+.++.+.++.+.+|.+. |.+++|-. ..+.|++++.|++|++|+++
T Consensus 199 ~~h~keil~~avS~Dgkylatgg~d~~v~Iw~~~t~ehv~~~~ghr~~--V~~L~fr~--gt~~lys~s~Drsvkvw~~~ 274 (479)
T KOG0299|consen 199 KGHVKEILTLAVSSDGKYLATGGRDRHVQIWDCDTLEHVKVFKGHRGA--VSSLAFRK--GTSELYSASADRSVKVWSID 274 (479)
T ss_pred ccccceeEEEEEcCCCcEEEecCCCceEEEecCcccchhhcccccccc--eeeeeeec--CccceeeeecCCceEEEehh
Confidence 489999999999999999999999999999999999999999999955 99999988 77899999999999999999
Q ss_pred CCCCCCCCeeeeecceeeEEEeeeeeccccccccCCCCcceeeccCCceeeecCCCCCCceeccCCCceEEEeecCcCeE
Q 021291 95 NGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQLSEV 174 (314)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i 174 (314)
....+. ++..++.... .++.-...-+++.|..|+++
T Consensus 275 ~~s~ve----tlyGHqd~v~----------------------------------------~IdaL~reR~vtVGgrDrT~ 310 (479)
T KOG0299|consen 275 QLSYVE----TLYGHQDGVL----------------------------------------GIDALSRERCVTVGGRDRTV 310 (479)
T ss_pred HhHHHH----HHhCCcccee----------------------------------------eechhcccceEEecccccee
Confidence 876543 3333322222 12222233355678789999
Q ss_pred EEEecCCCceeeeecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEeecCCcEEEEEccCCCCceEeee-cC--
Q 021291 175 EIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMK-VH-- 251 (314)
Q Consensus 175 ~vwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~~~~~-~h-- 251 (314)
++|++.....+ .+. ++ .+.+-|++ |-.+ . .+++|+.||.|.+|++.. .+|+.+.. +|
T Consensus 311 rlwKi~eesql-ifr--------g~----~~sidcv~-~In~----~-HfvsGSdnG~IaLWs~~K-Kkplf~~~~AHgv 370 (479)
T KOG0299|consen 311 RLWKIPEESQL-IFR--------GG----EGSIDCVA-FIND----E-HFVSGSDNGSIALWSLLK-KKPLFTSRLAHGV 370 (479)
T ss_pred EEEecccccee-eee--------CC----CCCeeeEE-Eecc----c-ceeeccCCceEEEeeecc-cCceeEeeccccc
Confidence 99999543332 333 44 34555665 6543 1 799999999999999987 77776543 33
Q ss_pred ---------CcceEEEEEeCCCCeEEEecCCCcEEEEecCCCeee----E------eeeeeeecCCCc
Q 021291 252 ---------LEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTYV----L------FGIGFVCDQEGN 300 (314)
Q Consensus 252 ---------~~~v~~~~~~~~~~~l~s~s~dg~i~iw~~~~~~~~----~------~~~~~~~~~~~~ 300 (314)
..+|++|+..|...++++||.+|.|++|.++.+-.. + ++..+.+..+|.
T Consensus 371 ~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g~r~i~~l~~ls~~GfVNsl~f~~sgk 438 (479)
T KOG0299|consen 371 IPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDGLRAINLLYSLSLVGFVNSLAFSNSGK 438 (479)
T ss_pred cCCccccccccceeeeEecccCceEEecCCCCceEEEEecCCccccceeeecccccEEEEEEEccCCC
Confidence 228999999999999999999999999999988221 1 245566677776
No 74
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.95 E-value=2.3e-24 Score=155.19 Aligned_cols=255 Identities=18% Similarity=0.210 Sum_probs=175.5
Q ss_pred eEEecCCCCceeEEEEccCCCEEEEecCCCeEEEEeCCC------Ce---------EEEEEeccCCcccEEEEEEcccCC
Q 021291 11 VAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQ------HR---------TVSSSWVHSAAHGIVSVATGPSIG 75 (314)
Q Consensus 11 ~~~l~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~------~~---------~~~~~~~~~~~~~v~~~~~~~~~~ 75 (314)
+-+|. -+..|.+++|+|.|.+.+.|+...+++|-.... +. ..+.-+.|. ..|+|.+|+| .
T Consensus 26 i~~l~-dsqairav~fhp~g~lyavgsnskt~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhk--gsiyc~~ws~--~ 100 (350)
T KOG0641|consen 26 INILE-DSQAIRAVAFHPAGGLYAVGSNSKTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHK--GSIYCTAWSP--C 100 (350)
T ss_pred EEEec-chhheeeEEecCCCceEEeccCCceEEEEccccccCcccccccccCCCeEEeeeccccC--ccEEEEEecC--c
Confidence 44443 467899999999999999999999999874321 10 112224455 4599999999 9
Q ss_pred CCeEEEeecCCeEEEEeCCCCCCCC-CCeeee--ecceeeEEEeeeeeccccccccCCCCc--ceeeccCC-ceeeecCC
Q 021291 76 LNKVISQGRDGTVKCWDIENGGLSS-NPSLTI--KTNSYHFCKLSLVKEPYANAKQANEPK--DCYEREVG-ETVDTDSL 149 (314)
Q Consensus 76 ~~~l~s~~~dg~v~iwd~~~~~~~~-~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~-~~~~~~~~ 149 (314)
|.++++|+.|.+|++.-.+...+.. -+.+++ +........|--....-......++.. .++...-+ ......+.
T Consensus 101 geliatgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~g~~~~a~s 180 (350)
T KOG0641|consen 101 GELIATGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGRGQGFHALS 180 (350)
T ss_pred cCeEEecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecCCCCcceeec
Confidence 9999999999999998776544322 122333 333333333322222222222222222 22222222 23344566
Q ss_pred CCCC--ce-eccCCCceEEEeecCcCeEEEEecCCCceeeeecccccCCCCCcCCCC-CceeeeEEEecCCCCCCceEEE
Q 021291 150 CDSK--DD-VPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKG-RGMCMAVQAYLPSKSQGFVNVL 225 (314)
Q Consensus 150 ~~~~--~~-~~~~~~~~~~~~g~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~h~~~~-~~~~~~~~~~~p~~~~g~~~l~ 225 (314)
+|.+ ++ ++.+|- ++++|+.|.+|++||++-..++.++... -|.... .+.+.+++ ..|. |+ +|+
T Consensus 181 ghtghilalyswn~~--m~~sgsqdktirfwdlrv~~~v~~l~~~------~~~~glessavaav~-vdps---gr-ll~ 247 (350)
T KOG0641|consen 181 GHTGHILALYSWNGA--MFASGSQDKTIRFWDLRVNSCVNTLDND------FHDGGLESSAVAAVA-VDPS---GR-LLA 247 (350)
T ss_pred CCcccEEEEEEecCc--EEEccCCCceEEEEeeeccceeeeccCc------ccCCCcccceeEEEE-ECCC---cc-eee
Confidence 7766 33 334442 4458999999999999998888877521 232222 24566666 8887 77 999
Q ss_pred EeecCCcEEEEEccCCCCceEeeecCCcceEEEEEeCCCCeEEEecCCCcEEEEecCCC
Q 021291 226 AGYEDGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHS 284 (314)
Q Consensus 226 ~g~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~iw~~~~~ 284 (314)
+|..|....+||++- +++++.+..|...|.++.|+|...|+.++|.|.+|++-|+...
T Consensus 248 sg~~dssc~lydirg-~r~iq~f~phsadir~vrfsp~a~yllt~syd~~ikltdlqgd 305 (350)
T KOG0641|consen 248 SGHADSSCMLYDIRG-GRMIQRFHPHSADIRCVRFSPGAHYLLTCSYDMKIKLTDLQGD 305 (350)
T ss_pred eccCCCceEEEEeeC-CceeeeeCCCccceeEEEeCCCceEEEEecccceEEEeecccc
Confidence 999999999999997 8999999999999999999999999999999999999998743
No 75
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.95 E-value=5.7e-26 Score=177.39 Aligned_cols=222 Identities=16% Similarity=0.244 Sum_probs=180.6
Q ss_pred CceeEEEEccCCCEEEEecCCCeEEEEeCCCCeEEEEEeccCCcccEEEEEEcccCCCCeEEEeecCCeEEEEeCCCCCC
Q 021291 19 ASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGGL 98 (314)
Q Consensus 19 ~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~ 98 (314)
..++++...|..+.+++|+.|..+.++|...++.+..+++|... |+.+.++| +...+++++.|-.|+||.......
T Consensus 220 pgi~ald~~~s~~~ilTGG~d~~av~~d~~s~q~l~~~~Gh~kk--i~~v~~~~--~~~~v~~aSad~~i~vws~~~~s~ 295 (506)
T KOG0289|consen 220 PGITALDIIPSSSKILTGGEDKTAVLFDKPSNQILATLKGHTKK--ITSVKFHK--DLDTVITASADEIIRVWSVPLSSE 295 (506)
T ss_pred CCeeEEeecCCCCcceecCCCCceEEEecchhhhhhhccCcceE--EEEEEecc--chhheeecCCcceEEeeccccccC
Confidence 56888888887778999999999999999999999999999955 99999999 888999999999999999876553
Q ss_pred CCCCeeeeecceeeEEEeeeeeccccccccCCCCcceeeccCCceeeecCCCCCCceeccCCCceEEEeecCcCeEEEEe
Q 021291 99 SSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQLSEVEIWD 178 (314)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~vwd 178 (314)
.. ....+..+... +..+|.|++++ +++.|++..+.|
T Consensus 296 ~~--~~~~h~~~V~~----------------------------------------ls~h~tgeYll--sAs~d~~w~Fsd 331 (506)
T KOG0289|consen 296 PT--SSRPHEEPVTG----------------------------------------LSLHPTGEYLL--SASNDGTWAFSD 331 (506)
T ss_pred cc--cccccccccee----------------------------------------eeeccCCcEEE--EecCCceEEEEE
Confidence 22 11111111111 45779999887 567799999999
Q ss_pred cCCCceeeeecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEeecCCcEEEEEccCCCCceEeeecCCcceEEE
Q 021291 179 LNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPVLCL 258 (314)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~~ 258 (314)
++++..+..... . .......+.+ |+|| |. +|.+|..||.|+|||+.+ +..+..+.+|.++|..+
T Consensus 332 ~~~g~~lt~vs~---------~-~s~v~~ts~~-fHpD---gL-ifgtgt~d~~vkiwdlks-~~~~a~Fpght~~vk~i 395 (506)
T KOG0289|consen 332 ISSGSQLTVVSD---------E-TSDVEYTSAA-FHPD---GL-IFGTGTPDGVVKIWDLKS-QTNVAKFPGHTGPVKAI 395 (506)
T ss_pred ccCCcEEEEEee---------c-cccceeEEee-EcCC---ce-EEeccCCCceEEEEEcCC-ccccccCCCCCCceeEE
Confidence 999998876652 1 1223466676 9998 55 999999999999999998 66889999999999999
Q ss_pred EEeCCCCeEEEecCCCcEEEEecCCCeeeEe--------eeeeeecCCCceece
Q 021291 259 SIDESCNGGISGGADQKIVLYNLDHSTYVLF--------GIGFVCDQEGNKFGT 304 (314)
Q Consensus 259 ~~~~~~~~l~s~s~dg~i~iw~~~~~~~~~~--------~~~~~~~~~~~~~~~ 304 (314)
+|+.+|.+|++++.|+.|++||++..+.... ...+++++.|..++.
T Consensus 396 ~FsENGY~Lat~add~~V~lwDLRKl~n~kt~~l~~~~~v~s~~fD~SGt~L~~ 449 (506)
T KOG0289|consen 396 SFSENGYWLATAADDGSVKLWDLRKLKNFKTIQLDEKKEVNSLSFDQSGTYLGI 449 (506)
T ss_pred EeccCceEEEEEecCCeEEEEEehhhcccceeeccccccceeEEEcCCCCeEEe
Confidence 9999999999999999999999998764432 456778888877765
No 76
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.95 E-value=1.1e-26 Score=174.39 Aligned_cols=182 Identities=15% Similarity=0.278 Sum_probs=139.3
Q ss_pred CceEEecCCCCceeEEEEccCCCEEEEecCCCeEEEEeCCCCeEEEEEeccCCcccEEEEEEcccCCCCeEEEeecCCeE
Q 021291 9 DPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTV 88 (314)
Q Consensus 9 ~~~~~l~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~v 88 (314)
..+++|..|.++|+++.|+|...+|++|+.|++|++||..+....+.++......+|.++.|+| .|.+|+.|..-.++
T Consensus 163 PvIRTlYDH~devn~l~FHPre~ILiS~srD~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHP--sGefllvgTdHp~~ 240 (430)
T KOG0640|consen 163 PVIRTLYDHVDEVNDLDFHPRETILISGSRDNTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHP--SGEFLLVGTDHPTL 240 (430)
T ss_pred ceEeehhhccCcccceeecchhheEEeccCCCeEEEEecccHHHHHHHHHhhccceeeeEeecC--CCceEEEecCCCce
Confidence 4688999999999999999999999999999999999998654444444334346699999999 99999999999999
Q ss_pred EEEeCCCCCCCCCCeeeeecceeeEEEeeeeeccccccccCCCCcceeeccCCceeeecCCCCCCceeccCCCceEEEee
Q 021291 89 KCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAG 168 (314)
Q Consensus 89 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 168 (314)
++||+++-++.. .......+...+.. +.+++.++ + .+++
T Consensus 241 rlYdv~T~Qcfv----sanPd~qht~ai~~-----------------------------------V~Ys~t~~-l-YvTa 279 (430)
T KOG0640|consen 241 RLYDVNTYQCFV----SANPDDQHTGAITQ-----------------------------------VRYSSTGS-L-YVTA 279 (430)
T ss_pred eEEeccceeEee----ecCcccccccceeE-----------------------------------EEecCCcc-E-EEEe
Confidence 999999987633 11111111111110 44778776 3 3489
Q ss_pred cCcCeEEEEecCCCceeeeecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEeecCCcEEEEEccCCCCceEee
Q 021291 169 EQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAM 248 (314)
Q Consensus 169 ~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~~~~ 248 (314)
+.||.|++||=-+++++.++.. +| ....+.+.. |..+ |+ ++++.+.|..+++|.+.+ ++++..+
T Consensus 280 SkDG~IklwDGVS~rCv~t~~~-------AH---~gsevcSa~-Ftkn---~k-yiLsSG~DS~vkLWEi~t-~R~l~~Y 343 (430)
T KOG0640|consen 280 SKDGAIKLWDGVSNRCVRTIGN-------AH---GGSEVCSAV-FTKN---GK-YILSSGKDSTVKLWEIST-GRMLKEY 343 (430)
T ss_pred ccCCcEEeeccccHHHHHHHHh-------hc---CCceeeeEE-EccC---Ce-EEeecCCcceeeeeeecC-CceEEEE
Confidence 9999999999999999999875 66 233455555 9887 55 999999999999999987 6666554
Q ss_pred e
Q 021291 249 K 249 (314)
Q Consensus 249 ~ 249 (314)
.
T Consensus 344 t 344 (430)
T KOG0640|consen 344 T 344 (430)
T ss_pred e
Confidence 4
No 77
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.95 E-value=6.7e-26 Score=177.00 Aligned_cols=211 Identities=21% Similarity=0.374 Sum_probs=171.4
Q ss_pred CCCCceEEecCCCCceeEEEEccCCCEEEEecCCCeEEEEeCCCCeEEEEEeccCCcccEEEEEEcccCCCCeEEEeecC
Q 021291 6 PPPDPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRD 85 (314)
Q Consensus 6 ~~~~~~~~l~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d 85 (314)
+..+.+.+|+||...|+.+.|+|+...+++++.|-.|+||......+......|..+ |+.+..+| .|.+|++++.|
T Consensus 249 ~s~q~l~~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~s~~~~~~~h~~~--V~~ls~h~--tgeYllsAs~d 324 (506)
T KOG0289|consen 249 PSNQILATLKGHTKKITSVKFHKDLDTVITASADEIIRVWSVPLSSEPTSSRPHEEP--VTGLSLHP--TGEYLLSASND 324 (506)
T ss_pred chhhhhhhccCcceEEEEEEeccchhheeecCCcceEEeeccccccCcccccccccc--ceeeeecc--CCcEEEEecCC
Confidence 345778899999999999999999999999999999999999988888888889844 99999999 99999999999
Q ss_pred CeEEEEeCCCCCCCCCCeeeeecceeeEEEeeeeeccccccccCCCCcceeeccCCceeeecCCCCCCceeccCCCceEE
Q 021291 86 GTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMA 165 (314)
Q Consensus 86 g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (314)
++..+.|++++.+.. ........+.+.. .+|+|||. ++
T Consensus 325 ~~w~Fsd~~~g~~lt-----~vs~~~s~v~~ts-----------------------------------~~fHpDgL--if 362 (506)
T KOG0289|consen 325 GTWAFSDISSGSQLT-----VVSDETSDVEYTS-----------------------------------AAFHPDGL--IF 362 (506)
T ss_pred ceEEEEEccCCcEEE-----EEeeccccceeEE-----------------------------------eeEcCCce--EE
Confidence 999999999987533 1111111111111 56999983 55
Q ss_pred EeecCcCeEEEEecCCCceeeeecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEeecCCcEEEEEccCCCCce
Q 021291 166 VAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPL 245 (314)
Q Consensus 166 ~~g~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~ 245 (314)
.+|..|+.|+|||+.++.....|+ +| .+.+.++. |+-+ |. +|++++.|+.|++||+|. .+..
T Consensus 363 gtgt~d~~vkiwdlks~~~~a~Fp--------gh----t~~vk~i~-FsEN---GY-~Lat~add~~V~lwDLRK-l~n~ 424 (506)
T KOG0289|consen 363 GTGTPDGVVKIWDLKSQTNVAKFP--------GH----TGPVKAIS-FSEN---GY-WLATAADDGSVKLWDLRK-LKNF 424 (506)
T ss_pred eccCCCceEEEEEcCCccccccCC--------CC----CCceeEEE-eccC---ce-EEEEEecCCeEEEEEehh-hccc
Confidence 589999999999999999888898 77 55788887 9976 55 999999999999999997 5555
Q ss_pred EeeecC-CcceEEEEEeCCCCeEEEecCCCcEEEEe
Q 021291 246 TAMKVH-LEPVLCLSIDESCNGGISGGADQKIVLYN 280 (314)
Q Consensus 246 ~~~~~h-~~~v~~~~~~~~~~~l~s~s~dg~i~iw~ 280 (314)
.++.-. ..+|.++.|++.|.+|+.++.|=.|++++
T Consensus 425 kt~~l~~~~~v~s~~fD~SGt~L~~~g~~l~Vy~~~ 460 (506)
T KOG0289|consen 425 KTIQLDEKKEVNSLSFDQSGTYLGIAGSDLQVYICK 460 (506)
T ss_pred ceeeccccccceeEEEcCCCCeEEeecceeEEEEEe
Confidence 555532 23799999999999999997775555554
No 78
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.95 E-value=2.4e-26 Score=183.26 Aligned_cols=232 Identities=15% Similarity=0.181 Sum_probs=166.2
Q ss_pred CCCCceEEecCCCCceeEEEEccCCCEEEEecCCCeEEEEeCCCCe----EEEEEeccCCcccEEEEEEcccCCCCeEEE
Q 021291 6 PPPDPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHR----TVSSSWVHSAAHGIVSVATGPSIGLNKVIS 81 (314)
Q Consensus 6 ~~~~~~~~l~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~----~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s 81 (314)
.|...-..|++|+..|.++++.|.|..|++|+.|.+|++||+.... ..+.++..+ ...|.++.|++ .++.|++
T Consensus 155 IP~shEi~l~hgtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E-~h~i~sl~ys~--Tg~~iLv 231 (641)
T KOG0772|consen 155 IPGSHEIQLKHGTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCE-THQINSLQYSV--TGDQILV 231 (641)
T ss_pred CCccceEeccCCceEEEEeeecCCCceeeeccccceEEEEecccccccchhhhccCccc-ccccceeeecC--CCCeEEE
Confidence 4555667899999999999999999999999999999999987532 222222211 13399999999 8899888
Q ss_pred eecCCeEEEEeCCCCCCCCCCeeeeecceeeEEEeeeeeccccccccCCCCcceeeccCCceeeecCCCCCC----ceec
Q 021291 82 QGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSK----DDVP 157 (314)
Q Consensus 82 ~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~ 157 (314)
.+.....+|+|-...+... ..+...+.. ++ ....+|.. .+|+
T Consensus 232 vsg~aqakl~DRdG~~~~e----~~KGDQYI~-----------------------Dm-------~nTKGHia~lt~g~wh 277 (641)
T KOG0772|consen 232 VSGSAQAKLLDRDGFEIVE----FSKGDQYIR-----------------------DM-------YNTKGHIAELTCGCWH 277 (641)
T ss_pred EecCcceeEEccCCceeee----eeccchhhh-----------------------hh-------hccCCceeeeeccccc
Confidence 8888899999977654322 111111100 00 01122222 5799
Q ss_pred cCCCceEEEeecCcCeEEEEecCCCc-eeeeecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEeecCCcEEEE
Q 021291 158 AEGPKYMAVAGEQLSEVEIWDLNTAE-RCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVW 236 (314)
Q Consensus 158 ~~~~~~~~~~g~~d~~i~vwd~~~~~-~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vw 236 (314)
|..+..++ +++.||++++||+...+ ....++. .-....+..+..++ |+|+ |. +||+|+.||.|.+|
T Consensus 278 P~~k~~Fl-T~s~DgtlRiWdv~~~k~q~qVik~-------k~~~g~Rv~~tsC~-~nrd---g~-~iAagc~DGSIQ~W 344 (641)
T KOG0772|consen 278 PDNKEEFL-TCSYDGTLRIWDVNNTKSQLQVIKT-------KPAGGKRVPVTSCA-WNRD---GK-LIAAGCLDGSIQIW 344 (641)
T ss_pred cCcccceE-EecCCCcEEEEecCCchhheeEEee-------ccCCCcccCceeee-cCCC---cc-hhhhcccCCceeee
Confidence 99988887 56679999999998544 3333432 11122344666776 9999 55 89999999999999
Q ss_pred EccCCC-C-ceEeeecCCc--ceEEEEEeCCCCeEEEecCCCcEEEEecCCCeee
Q 021291 237 DIRNPG-I-PLTAMKVHLE--PVLCLSIDESCNGGISGGADQKIVLYNLDHSTYV 287 (314)
Q Consensus 237 d~~~~~-~-~~~~~~~h~~--~v~~~~~~~~~~~l~s~s~dg~i~iw~~~~~~~~ 287 (314)
+..... . ....-++|.. .|++|.|+.+|++|++-|.|+++++||++..++.
T Consensus 345 ~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~tLKvWDLrq~kkp 399 (641)
T KOG0772|consen 345 DKGSRTVRPVMKVKDAHLPGQDITSISFSYDGNYLLSRGFDDTLKVWDLRQFKKP 399 (641)
T ss_pred ecCCcccccceEeeeccCCCCceeEEEeccccchhhhccCCCceeeeeccccccc
Confidence 986422 2 2344457877 8999999999999999999999999999877654
No 79
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.95 E-value=7.4e-26 Score=191.41 Aligned_cols=206 Identities=24% Similarity=0.384 Sum_probs=169.8
Q ss_pred eEEecC-CCCceeEEEEccCCCEEEEecCCCeEEEEeCCCCeEEEE-EeccCCcccEEEEEEcccCCCCeEEEeecCCeE
Q 021291 11 VAVLRG-HRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSS-SWVHSAAHGIVSVATGPSIGLNKVISQGRDGTV 88 (314)
Q Consensus 11 ~~~l~~-h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~v 88 (314)
.+.+.+ |...+.+..|. +.++++++.|++|++||..++..+.. +.+|.+. |+++++.. .+.+|++|+.|.++
T Consensus 200 ~~~~~~~~~~~~~~~q~~--~~~~~~~s~~~tl~~~~~~~~~~i~~~l~GH~g~--V~~l~~~~--~~~~lvsgS~D~t~ 273 (537)
T KOG0274|consen 200 YKVLLGTDDHVVLCLQLH--DGFFKSGSDDSTLHLWDLNNGYLILTRLVGHFGG--VWGLAFPS--GGDKLVSGSTDKTE 273 (537)
T ss_pred ceeecccCcchhhhheee--cCeEEecCCCceeEEeecccceEEEeeccCCCCC--ceeEEEec--CCCEEEEEecCCcE
Confidence 344454 67788899998 55899999999999999999998888 9999954 99999987 67999999999999
Q ss_pred EEEeCCCCCCCCCCeeeeecceeeEEEeeeeeccccccccCCCCcceeeccCCceeeecCCCCCCceeccCCCceEEEee
Q 021291 89 KCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAG 168 (314)
Q Consensus 89 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 168 (314)
++||..++++.. .+..+......+. -. +. ..++|
T Consensus 274 rvWd~~sg~C~~----~l~gh~stv~~~~----------------------------------------~~-~~-~~~sg 307 (537)
T KOG0274|consen 274 RVWDCSTGECTH----SLQGHTSSVRCLT----------------------------------------ID-PF-LLVSG 307 (537)
T ss_pred EeEecCCCcEEE----EecCCCceEEEEE----------------------------------------cc-Cc-eEeec
Confidence 999999998855 3433333322222 11 22 33478
Q ss_pred cCcCeEEEEecCCCceeeeecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEeecCCcEEEEEccCCCCceEee
Q 021291 169 EQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAM 248 (314)
Q Consensus 169 ~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~~~~ 248 (314)
+.|.+|++|++.++..+..+. +| .+.+.++. ++-+ ++++|+.|++|++||+.+ ++++..+
T Consensus 308 s~D~tVkVW~v~n~~~l~l~~--------~h----~~~V~~v~-~~~~------~lvsgs~d~~v~VW~~~~-~~cl~sl 367 (537)
T KOG0274|consen 308 SRDNTVKVWDVTNGACLNLLR--------GH----TGPVNCVQ-LDEP------LLVSGSYDGTVKVWDPRT-GKCLKSL 367 (537)
T ss_pred cCCceEEEEeccCcceEEEec--------cc----cccEEEEE-ecCC------EEEEEecCceEEEEEhhh-ceeeeee
Confidence 899999999999999999888 66 55788877 6633 999999999999999997 9999999
Q ss_pred ecCCcceEEEEEeCCCCeEEEecCCCcEEEEecCCC-eeeEe
Q 021291 249 KVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHS-TYVLF 289 (314)
Q Consensus 249 ~~h~~~v~~~~~~~~~~~l~s~s~dg~i~iw~~~~~-~~~~~ 289 (314)
.+|...|.++.+++. ..+++|+.|+.|++||+++. +++..
T Consensus 368 ~gH~~~V~sl~~~~~-~~~~Sgs~D~~IkvWdl~~~~~c~~t 408 (537)
T KOG0274|consen 368 SGHTGRVYSLIVDSE-NRLLSGSLDTTIKVWDLRTKRKCIHT 408 (537)
T ss_pred cCCcceEEEEEecCc-ceEEeeeeccceEeecCCchhhhhhh
Confidence 999999999998875 58999999999999999999 66654
No 80
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.95 E-value=1.3e-26 Score=195.54 Aligned_cols=209 Identities=17% Similarity=0.294 Sum_probs=173.4
Q ss_pred EecCCCCceeEEEEccCCCEEEEecCCCeEEEEeCCCCeEEEEEeccCCcccEEEEEEcccCCCCeEEEeecCCeEEEEe
Q 021291 13 VLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWD 92 (314)
Q Consensus 13 ~l~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd 92 (314)
.|..-+..|..++|+|....++++-..|.|.+||.+-+.++..|..|.++ |..++|+| .+.+|+||++|-.|++|+
T Consensus 4 kfEskSsRvKglsFHP~rPwILtslHsG~IQlWDYRM~tli~rFdeHdGp--VRgv~FH~--~qplFVSGGDDykIkVWn 79 (1202)
T KOG0292|consen 4 KFESKSSRVKGLSFHPKRPWILTSLHSGVIQLWDYRMGTLIDRFDEHDGP--VRGVDFHP--TQPLFVSGGDDYKIKVWN 79 (1202)
T ss_pred hhhcccccccceecCCCCCEEEEeecCceeeeehhhhhhHHhhhhccCCc--cceeeecC--CCCeEEecCCccEEEEEe
Confidence 45556788999999999999999999999999999999999999999955 99999999 889999999999999999
Q ss_pred CCCCCCCCCCeeeeecceeeEEEeeeeeccccccccCCCCcceeeccCCceeeecCCCCCCceeccCCCceEEEeecCcC
Q 021291 93 IENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQLS 172 (314)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~ 172 (314)
..+.++.- ++..+-..... +.|++.-.-++ +++.|.
T Consensus 80 Yk~rrclf----tL~GHlDYVRt--------------------------------------~~FHheyPWIl--SASDDQ 115 (1202)
T KOG0292|consen 80 YKTRRCLF----TLLGHLDYVRT--------------------------------------VFFHHEYPWIL--SASDDQ 115 (1202)
T ss_pred cccceehh----hhccccceeEE--------------------------------------eeccCCCceEE--EccCCC
Confidence 99987743 33332111110 33666655444 788899
Q ss_pred eEEEEecCCCceeeeecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEeecCCcEEEEEccCC-------C---
Q 021291 173 EVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNP-------G--- 242 (314)
Q Consensus 173 ~i~vwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~-------~--- 242 (314)
+|+||+..+++++..+. || ...++|.+ |+|.+. .+++++.|-+|+|||+.-. +
T Consensus 116 TIrIWNwqsr~~iavlt--------GH----nHYVMcAq-FhptED----lIVSaSLDQTVRVWDisGLRkk~~~pg~~e 178 (1202)
T KOG0292|consen 116 TIRIWNWQSRKCIAVLT--------GH----NHYVMCAQ-FHPTED----LIVSASLDQTVRVWDISGLRKKNKAPGSLE 178 (1202)
T ss_pred eEEEEeccCCceEEEEe--------cC----ceEEEeec-cCCccc----eEEEecccceEEEEeecchhccCCCCCCch
Confidence 99999999999999999 78 55899998 999733 8999999999999998521 1
Q ss_pred ------------------CceEeeecCCcceEEEEEeCCCCeEEEecCCCcEEEEecCCCee
Q 021291 243 ------------------IPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTY 286 (314)
Q Consensus 243 ------------------~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~iw~~~~~~~ 286 (314)
...+.+.||...|+-++|+|.-.+|+||++|..|++|.+..-+-
T Consensus 179 ~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlpliVSG~DDRqVKlWrmnetKa 240 (1202)
T KOG0292|consen 179 DQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKA 240 (1202)
T ss_pred hhhhccccchhhcCCcCeeeeeeecccccccceEEecCCcceEEecCCcceeeEEEeccccc
Confidence 02245779999999999999999999999999999999876653
No 81
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.95 E-value=8.4e-26 Score=194.58 Aligned_cols=257 Identities=15% Similarity=0.175 Sum_probs=191.3
Q ss_pred CCceEEecCCCCceeEEEEccCCCEEEEecCCCeEEEEeCCC------------------CeEEEEEeccCCcccEEEEE
Q 021291 8 PDPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQ------------------HRTVSSSWVHSAAHGIVSVA 69 (314)
Q Consensus 8 ~~~~~~l~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~------------------~~~~~~~~~~~~~~~v~~~~ 69 (314)
++.+.++..|.+.|+|+.|+|||++||+|+.|+.|.||+... .++...+.+|... |..++
T Consensus 59 ~k~l~~m~~h~~sv~CVR~S~dG~~lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~D--V~Dv~ 136 (942)
T KOG0973|consen 59 PKHLCTMDDHDGSVNCVRFSPDGSYLASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSD--VLDVN 136 (942)
T ss_pred chhheeeccccCceeEEEECCCCCeEeeccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCc--cceec
Confidence 367778889999999999999999999999999999998762 1367788899966 99999
Q ss_pred EcccCCCCeEEEeecCCeEEEEeCCCCCCCCCCeeeeecceeeEEEeeeeeccccccccCCCCcceeeccCCcee---ee
Q 021291 70 TGPSIGLNKVISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETV---DT 146 (314)
Q Consensus 70 ~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~ 146 (314)
|+| ++.+|++++.|++|.|||..+.++.. .+..+........+.+.+...+.. .++....+|+....... ..
T Consensus 137 Wsp--~~~~lvS~s~DnsViiwn~~tF~~~~--vl~~H~s~VKGvs~DP~Gky~ASq-sdDrtikvwrt~dw~i~k~It~ 211 (942)
T KOG0973|consen 137 WSP--DDSLLVSVSLDNSVIIWNAKTFELLK--VLRGHQSLVKGVSWDPIGKYFASQ-SDDRTLKVWRTSDWGIEKSITK 211 (942)
T ss_pred cCC--CccEEEEecccceEEEEccccceeee--eeecccccccceEECCccCeeeee-cCCceEEEEEcccceeeEeecc
Confidence 999 99999999999999999999997665 555555556666666666554433 33345566665442211 11
Q ss_pred cCCCCCC------ceeccCCCceEEEeecC--cCeEEEEecCCCceeeeecccccCCCCCcCCCCCceeeeEEEecCCC-
Q 021291 147 DSLCDSK------DDVPAEGPKYMAVAGEQ--LSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSK- 217 (314)
Q Consensus 147 ~~~~~~~------~~~~~~~~~~~~~~g~~--d~~i~vwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~- 217 (314)
.+..-.. ++|+|||+++...-+-. -.++.|.+-.+.+.-..+. || ...+.++. |+|.-
T Consensus 212 pf~~~~~~T~f~RlSWSPDG~~las~nA~n~~~~~~~IieR~tWk~~~~Lv--------GH----~~p~evvr-FnP~lf 278 (942)
T KOG0973|consen 212 PFEESPLTTFFLRLSWSPDGHHLASPNAVNGGKSTIAIIERGTWKVDKDLV--------GH----SAPVEVVR-FNPKLF 278 (942)
T ss_pred chhhCCCcceeeecccCCCcCeecchhhccCCcceeEEEecCCceeeeeee--------cC----CCceEEEE-eChHHh
Confidence 1111111 99999999876433222 2468888877777777777 88 44777776 99831
Q ss_pred ----C---CCc-----eEEEEeecCCcEEEEEccCCCCceEee-ecCCcceEEEEEeCCCCeEEEecCCCcEEEEecCCC
Q 021291 218 ----S---QGF-----VNVLAGYEDGSILVWDIRNPGIPLTAM-KVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHS 284 (314)
Q Consensus 218 ----~---~g~-----~~l~~g~~dg~i~vwd~~~~~~~~~~~-~~h~~~v~~~~~~~~~~~l~s~s~dg~i~iw~~~~~ 284 (314)
. ..+ ..+|+|+.|++|.||.... .+|+... .-....|.+++|+|||..|+.+|.||+|.+..++..
T Consensus 279 e~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~-~RPl~vi~~lf~~SI~DmsWspdG~~LfacS~DGtV~~i~Fee~ 357 (942)
T KOG0973|consen 279 ERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTAL-PRPLFVIHNLFNKSIVDMSWSPDGFSLFACSLDGTVALIHFEEK 357 (942)
T ss_pred ccccccCCccCCCcceEEEEEecCCccEEEEecCC-CCchhhhhhhhcCceeeeeEcCCCCeEEEEecCCeEEEEEcchH
Confidence 1 111 1689999999999999977 5555433 345679999999999999999999999999998865
Q ss_pred e
Q 021291 285 T 285 (314)
Q Consensus 285 ~ 285 (314)
+
T Consensus 358 E 358 (942)
T KOG0973|consen 358 E 358 (942)
T ss_pred H
Confidence 4
No 82
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.95 E-value=1.4e-25 Score=186.20 Aligned_cols=247 Identities=20% Similarity=0.331 Sum_probs=185.5
Q ss_pred EEecCCCCceeEEEEccCCCEEEEecCCCeEEEEeCCCCeEEEEEe----------------------------------
Q 021291 12 AVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSW---------------------------------- 57 (314)
Q Consensus 12 ~~l~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~---------------------------------- 57 (314)
.++.||...|.+++++.+...+++|+.+ .+++|+..+.++++++.
T Consensus 367 i~~~GHR~dVRsl~vS~d~~~~~Sga~~-SikiWn~~t~kciRTi~~~y~l~~~Fvpgd~~Iv~G~k~Gel~vfdlaS~~ 445 (888)
T KOG0306|consen 367 IEIGGHRSDVRSLCVSSDSILLASGAGE-SIKIWNRDTLKCIRTITCGYILASKFVPGDRYIVLGTKNGELQVFDLASAS 445 (888)
T ss_pred eeeccchhheeEEEeecCceeeeecCCC-cEEEEEccCcceeEEeccccEEEEEecCCCceEEEeccCCceEEEEeehhh
Confidence 4567999999999999988777777654 79999999888876653
Q ss_pred ------ccCCcccEEEEEEcccCCCCeEEEeecCCeEEEEeCCC-----CCCCCCCeeeeecc---eeeEEEeeeeeccc
Q 021291 58 ------VHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIEN-----GGLSSNPSLTIKTN---SYHFCKLSLVKEPY 123 (314)
Q Consensus 58 ------~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~-----~~~~~~~~~~~~~~---~~~~~~~~~~~~~~ 123 (314)
.|.+. |++++.+| |+..+++||.|.+|++||..- +...+ .+.++.. ...........+|.
T Consensus 446 l~Eti~AHdga--IWsi~~~p--D~~g~vT~saDktVkfWdf~l~~~~~gt~~k--~lsl~~~rtLel~ddvL~v~~Spd 519 (888)
T KOG0306|consen 446 LVETIRAHDGA--IWSISLSP--DNKGFVTGSADKTVKFWDFKLVVSVPGTQKK--VLSLKHTRTLELEDDVLCVSVSPD 519 (888)
T ss_pred hhhhhhccccc--eeeeeecC--CCCceEEecCCcEEEEEeEEEEeccCcccce--eeeeccceEEeccccEEEEEEcCC
Confidence 56644 99999999 999999999999999999742 11111 1222111 11112222333333
Q ss_pred ccc---ccCCCCcceeeccCCceeeecCCCCCC----ceeccCCCceEEEeecCcCeEEEEecCCCceeeeecccccCCC
Q 021291 124 ANA---KQANEPKDCYEREVGETVDTDSLCDSK----DDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGS 196 (314)
Q Consensus 124 ~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~g~~d~~i~vwd~~~~~~~~~~~~~~~~~~ 196 (314)
... ..-.....++-+++.+... .+.+|.- +.++||++.+ ++|+.|..|++|-+.=|.+-..+-
T Consensus 520 gk~LaVsLLdnTVkVyflDtlKFfl-sLYGHkLPV~smDIS~DSkli--vTgSADKnVKiWGLdFGDCHKS~f------- 589 (888)
T KOG0306|consen 520 GKLLAVSLLDNTVKVYFLDTLKFFL-SLYGHKLPVLSMDISPDSKLI--VTGSADKNVKIWGLDFGDCHKSFF------- 589 (888)
T ss_pred CcEEEEEeccCeEEEEEecceeeee-eecccccceeEEeccCCcCeE--EeccCCCceEEeccccchhhhhhh-------
Confidence 222 2233455556666555443 3445554 7889998733 378889999999999999988887
Q ss_pred CCcCCCCCceeeeEEEecCCCCCCceEEEEeecCCcEEEEEccCCCCceEeeecCCcceEEEEEeCCCCeEEEecCCCcE
Q 021291 197 PNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKI 276 (314)
Q Consensus 197 ~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i 276 (314)
+|. ..++++. |.|. .. .+.+++.|+.|+-||-.. -..++.+.+|...|++++..|+|.+++|+|.|..|
T Consensus 590 -AHd----DSvm~V~-F~P~---~~-~FFt~gKD~kvKqWDg~k-Fe~iq~L~~H~~ev~cLav~~~G~~vvs~shD~sI 658 (888)
T KOG0306|consen 590 -AHD----DSVMSVQ-FLPK---TH-LFFTCGKDGKVKQWDGEK-FEEIQKLDGHHSEVWCLAVSPNGSFVVSSSHDKSI 658 (888)
T ss_pred -ccc----CceeEEE-Eccc---ce-eEEEecCcceEEeechhh-hhhheeeccchheeeeeEEcCCCCeEEeccCCcee
Confidence 774 4889998 9996 33 899999999999999988 78899999999999999999999999999999999
Q ss_pred EEEecCCCee
Q 021291 277 VLYNLDHSTY 286 (314)
Q Consensus 277 ~iw~~~~~~~ 286 (314)
++|.......
T Consensus 659 RlwE~tde~~ 668 (888)
T KOG0306|consen 659 RLWERTDEIL 668 (888)
T ss_pred EeeeccCcce
Confidence 9998765433
No 83
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.95 E-value=3.1e-26 Score=166.28 Aligned_cols=218 Identities=14% Similarity=0.171 Sum_probs=164.2
Q ss_pred EecCCCCceeEEEEccCCCEEEEecCCCeEEEEeCCCC---eEEEEEeccCCcccEEEEEEcccCCCCeEEEeecCCeEE
Q 021291 13 VLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQH---RTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVK 89 (314)
Q Consensus 13 ~l~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~---~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~v~ 89 (314)
.-..|.+.|..+...--|++|||++.|++|+|+.++.. +.+.++.+|.++ |+.++|....-|.+|++++.||.|.
T Consensus 6 idt~H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GP--Vwqv~wahPk~G~iLAScsYDgkVI 83 (299)
T KOG1332|consen 6 IDTQHEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGP--VWKVAWAHPKFGTILASCSYDGKVI 83 (299)
T ss_pred hhhhhhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCCCceeeeEecCCCCC--eeEEeecccccCcEeeEeecCceEE
Confidence 44579999999988888999999999999999998764 578899999955 9999998655789999999999999
Q ss_pred EEeCCCCCCCCCCeeeeecceeeEEEeeeeeccccccccCCCCcceeeccCCceeeecCCCCCCceeccCCCceEEEeec
Q 021291 90 CWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGE 169 (314)
Q Consensus 90 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 169 (314)
||.-++++..+...+..+...... ++|.|.+-.+++++++
T Consensus 84 iWke~~g~w~k~~e~~~h~~SVNs----------------------------------------V~wapheygl~Lacas 123 (299)
T KOG1332|consen 84 IWKEENGRWTKAYEHAAHSASVNS----------------------------------------VAWAPHEYGLLLACAS 123 (299)
T ss_pred EEecCCCchhhhhhhhhhccccee----------------------------------------ecccccccceEEEEee
Confidence 999998865442112222211111 5677887777778888
Q ss_pred CcCeEEEEecCCC-c-eeeeecccccCCCCCcCCCCCceeeeEEEecCCCCCC----------ceEEEEeecCCcEEEEE
Q 021291 170 QLSEVEIWDLNTA-E-RCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQG----------FVNVLAGYEDGSILVWD 237 (314)
Q Consensus 170 ~d~~i~vwd~~~~-~-~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g----------~~~l~~g~~dg~i~vwd 237 (314)
.||.|.|.+.+.. . ....+.. .|.. -+.++. |.|....| -..|++|+.|..|+||+
T Consensus 124 SDG~vsvl~~~~~g~w~t~ki~~-------aH~~----GvnsVs-wapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~ 191 (299)
T KOG1332|consen 124 SDGKVSVLTYDSSGGWTTSKIVF-------AHEI----GVNSVS-WAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWK 191 (299)
T ss_pred CCCcEEEEEEcCCCCccchhhhh-------cccc----ccceee-ecCcCCCccccccCcccccceeeccCCccceeeee
Confidence 8999999988754 1 2222221 5533 456665 77753222 12699999999999999
Q ss_pred ccCCC-CceEeeecCCcceEEEEEeCCC----CeEEEecCCCcEEEEecCCC
Q 021291 238 IRNPG-IPLTAMKVHLEPVLCLSIDESC----NGGISGGADQKIVLYNLDHS 284 (314)
Q Consensus 238 ~~~~~-~~~~~~~~h~~~v~~~~~~~~~----~~l~s~s~dg~i~iw~~~~~ 284 (314)
..+.. ..-+.|.+|.+.|..++|.|.- .+|+++|+||++.||..+..
T Consensus 192 ~~~~~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt~~~e 243 (299)
T KOG1332|consen 192 FDSDSWKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDGTVIIWTKDEE 243 (299)
T ss_pred cCCcchhhhhhhhhcchhhhhhhhccccCCCceeeEEecCCCcEEEEEecCc
Confidence 98732 2335589999999999997753 36899999999999987744
No 84
>PTZ00420 coronin; Provisional
Probab=99.95 E-value=1.4e-24 Score=184.29 Aligned_cols=187 Identities=18% Similarity=0.222 Sum_probs=142.1
Q ss_pred ecCCCeEEEEeCCCCeEEEEEeccCCcccEEEEEEcccCC-CCeEEEeecCCeEEEEeCCCCCCCCCCeeeeecceeeEE
Q 021291 36 GTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIG-LNKVISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFC 114 (314)
Q Consensus 36 ~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~ 114 (314)
|+.++.|++|+..+...+..+.+|... |.+++|+| + +++|++|+.|++|+|||+.++..... ... .. ..
T Consensus 50 GG~~gvI~L~~~~r~~~v~~L~gH~~~--V~~lafsP--~~~~lLASgS~DgtIrIWDi~t~~~~~~---~i~-~p--~~ 119 (568)
T PTZ00420 50 GGLIGAIRLENQMRKPPVIKLKGHTSS--ILDLQFNP--CFSEILASGSEDLTIRVWEIPHNDESVK---EIK-DP--QC 119 (568)
T ss_pred CCceeEEEeeecCCCceEEEEcCCCCC--EEEEEEcC--CCCCEEEEEeCCCeEEEEECCCCCcccc---ccc-cc--eE
Confidence 667899999998887888889999854 99999999 5 68999999999999999986532110 000 00 00
Q ss_pred EeeeeeccccccccCCCCcceeeccCCceeeecCCCCCC----ceeccCCCceEEEeecCcCeEEEEecCCCceeeeecc
Q 021291 115 KLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSK----DDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQ 190 (314)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~g~~d~~i~vwd~~~~~~~~~~~~ 190 (314)
.+.+|.. ++|+|++..+++ +++.|++|++||+++++....+.
T Consensus 120 --------------------------------~L~gH~~~V~sVaf~P~g~~iLa-SgS~DgtIrIWDl~tg~~~~~i~- 165 (568)
T PTZ00420 120 --------------------------------ILKGHKKKISIIDWNPMNYYIMC-SSGFDSFVNIWDIENEKRAFQIN- 165 (568)
T ss_pred --------------------------------EeecCCCcEEEEEECCCCCeEEE-EEeCCCeEEEEECCCCcEEEEEe-
Confidence 0111211 679999877665 56679999999999988766654
Q ss_pred cccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEeecCCcEEEEEccCCCCceEeeecCCcceEEE-----EEeCCCC
Q 021291 191 NSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPVLCL-----SIDESCN 265 (314)
Q Consensus 191 ~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~~-----~~~~~~~ 265 (314)
| ...+.++. |+|+ |. +|++++.|+.|+|||+++ +..+.++.+|.+.+... .|++++.
T Consensus 166 --------~----~~~V~Sls-wspd---G~-lLat~s~D~~IrIwD~Rs-g~~i~tl~gH~g~~~s~~v~~~~fs~d~~ 227 (568)
T PTZ00420 166 --------M----PKKLSSLK-WNIK---GN-LLSGTCVGKHMHIIDPRK-QEIASSFHIHDGGKNTKNIWIDGLGGDDN 227 (568)
T ss_pred --------c----CCcEEEEE-ECCC---CC-EEEEEecCCEEEEEECCC-CcEEEEEecccCCceeEEEEeeeEcCCCC
Confidence 2 23578887 9998 55 889999999999999998 88888999998765443 3458888
Q ss_pred eEEEecCCC----cEEEEecCCC
Q 021291 266 GGISGGADQ----KIVLYNLDHS 284 (314)
Q Consensus 266 ~l~s~s~dg----~i~iw~~~~~ 284 (314)
+|+|++.|+ .|+|||++..
T Consensus 228 ~IlTtG~d~~~~R~VkLWDlr~~ 250 (568)
T PTZ00420 228 YILSTGFSKNNMREMKLWDLKNT 250 (568)
T ss_pred EEEEEEcCCCCccEEEEEECCCC
Confidence 999988774 7999999953
No 85
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.95 E-value=2.3e-25 Score=184.99 Aligned_cols=268 Identities=18% Similarity=0.300 Sum_probs=191.6
Q ss_pred CceEEecCCCCceeEEEEccCCCEEEEecCCCeEEEEeCCCCeEEEEEeccCCcccEEEEEEcccCCCCeEEEeecCCeE
Q 021291 9 DPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTV 88 (314)
Q Consensus 9 ~~~~~l~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~v 88 (314)
.+..+|.||..+|+++.|+..|..|++||.|+.|.+||+-...-+..+++|... |+.+-|.. +.+++++.+.|+.|
T Consensus 98 ~~~~tfngHK~AVt~l~fd~~G~rlaSGskDt~IIvwDlV~E~Gl~rL~GHkd~--iT~~~F~~--~~~~lvS~sKDs~i 173 (888)
T KOG0306|consen 98 EILITFNGHKAAVTTLKFDKIGTRLASGSKDTDIIVWDLVGEEGLFRLRGHKDS--ITQALFLN--GDSFLVSVSKDSMI 173 (888)
T ss_pred ceeeeecccccceEEEEEcccCceEeecCCCccEEEEEeccceeeEEeecchHH--HhHHhccC--CCeEEEEeccCceE
Confidence 667889999999999999999999999999999999999887888899999844 99999988 77899999999999
Q ss_pred EEEeCCCCCCCCCCeeeeecceee-----------------EEEeee---------------------------------
Q 021291 89 KCWDIENGGLSSNPSLTIKTNSYH-----------------FCKLSL--------------------------------- 118 (314)
Q Consensus 89 ~iwd~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~--------------------------------- 118 (314)
++||+++..|... .-.+..... ...+.+
T Consensus 174 K~WdL~tqhCf~T--hvd~r~Eiw~l~~~~~~lvt~~~dse~~v~~L~~~~D~~~~~~~~s~~~~G~~~rqsk~R~i~l~ 251 (888)
T KOG0306|consen 174 KFWDLETQHCFET--HVDHRGEIWALVLDEKLLVTAGTDSELKVWELAFEDDEKETNRYISTKLRGTFIRQSKGREINLV 251 (888)
T ss_pred EEEecccceeeeE--EecccceEEEEEEecceEEEEecCCceEEEEeecccccccccccceeeccceeeeccCCceeEEe
Confidence 9999988765431 000000000 000000
Q ss_pred -eeccc---------------------------------------------------------------------cccc-
Q 021291 119 -VKEPY---------------------------------------------------------------------ANAK- 127 (314)
Q Consensus 119 -~~~~~---------------------------------------------------------------------~~~~- 127 (314)
..+.. ....
T Consensus 252 ~d~s~r~~~c~g~d~~~e~frI~s~~E~~k~l~Kk~k~~Kkka~t~e~~~~v~~sl~~~i~r~~~ir~~~kiks~dv~~~ 331 (888)
T KOG0306|consen 252 TDFSDRFLVCQGADKVIELFRIRSKEEIAKILSKKLKRAKKKAETEENEDDVEKSLSDEIKRLETIRTSAKIKSFDVTPS 331 (888)
T ss_pred ecCcccEEEEecchhhhhheeecCHHHHHHHHHHHHHHhhhhccccccccchhhhHHHHHHHHHheechhheeEEEEEec
Confidence 00000 0000
Q ss_pred ---------cCCCCcceeeccC-C-------ceeeecCCCCCC----ceeccCCCceEEEeecCcCeEEEEecCCCceee
Q 021291 128 ---------QANEPKDCYEREV-G-------ETVDTDSLCDSK----DDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCT 186 (314)
Q Consensus 128 ---------~~~~~~~~~~~~~-~-------~~~~~~~~~~~~----~~~~~~~~~~~~~~g~~d~~i~vwd~~~~~~~~ 186 (314)
.......++.+.. . ........+|+. ++++.+. +++++|+ .+.+++|+..+.++++
T Consensus 332 ~~~~~~lv~l~nNtv~~ysl~~s~~~~p~~~~~~~i~~~GHR~dVRsl~vS~d~--~~~~Sga-~~SikiWn~~t~kciR 408 (888)
T KOG0306|consen 332 GGTENTLVLLANNTVEWYSLENSGKTSPEADRTSNIEIGGHRSDVRSLCVSSDS--ILLASGA-GESIKIWNRDTLKCIR 408 (888)
T ss_pred CCcceeEEEeecCceEEEEeccCCCCCccccccceeeeccchhheeEEEeecCc--eeeeecC-CCcEEEEEccCcceeE
Confidence 0000111111111 0 011123445655 6666654 4555665 5899999999999999
Q ss_pred eecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEeecCCcEEEEEccCCCCceEeeecCCcceEEEEEeCCCCe
Q 021291 187 RLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNG 266 (314)
Q Consensus 187 ~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~ 266 (314)
++. .+.+.+.. |-|. ++ +++.|..+|.+.+||+.+ ...+.++.+|.+.|++++.+||+..
T Consensus 409 Ti~--------------~~y~l~~~-Fvpg---d~-~Iv~G~k~Gel~vfdlaS-~~l~Eti~AHdgaIWsi~~~pD~~g 468 (888)
T KOG0306|consen 409 TIT--------------CGYILASK-FVPG---DR-YIVLGTKNGELQVFDLAS-ASLVETIRAHDGAIWSISLSPDNKG 468 (888)
T ss_pred Eec--------------cccEEEEE-ecCC---Cc-eEEEeccCCceEEEEeeh-hhhhhhhhccccceeeeeecCCCCc
Confidence 998 33677776 9996 33 999999999999999998 8888899999999999999999999
Q ss_pred EEEecCCCcEEEEecCC-----Cee---eE-----------eeeeeeecCCCceecee
Q 021291 267 GISGGADQKIVLYNLDH-----STY---VL-----------FGIGFVCDQEGNKFGTT 305 (314)
Q Consensus 267 l~s~s~dg~i~iw~~~~-----~~~---~~-----------~~~~~~~~~~~~~~~~~ 305 (314)
++|||.|.+|++||+.- +.+ +. .+...+.+|+|+.++..
T Consensus 469 ~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL~v~~Spdgk~LaVs 526 (888)
T KOG0306|consen 469 FVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVLCVSVSPDGKLLAVS 526 (888)
T ss_pred eEEecCCcEEEEEeEEEEeccCcccceeeeeccceEEeccccEEEEEEcCCCcEEEEE
Confidence 99999999999999742 111 10 25667788999888754
No 86
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.94 E-value=1.7e-25 Score=176.19 Aligned_cols=212 Identities=17% Similarity=0.266 Sum_probs=165.0
Q ss_pred CCceeEEEEccCCCEEEEecCCCeEEEEeCCCCeEEEEEeccCCcccEEEEEEcccCCCCeEEEeecCCeEEEEeCCCC-
Q 021291 18 RASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENG- 96 (314)
Q Consensus 18 ~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~- 96 (314)
.++|.|++-+|+|.+|+.|+..|.|++|.+.+|+.+..+..|-.. |+|+.|+. |+.+|+|||.||.|.+|.+..-
T Consensus 81 Pg~v~al~s~n~G~~l~ag~i~g~lYlWelssG~LL~v~~aHYQ~--ITcL~fs~--dgs~iiTgskDg~V~vW~l~~lv 156 (476)
T KOG0646|consen 81 PGPVHALASSNLGYFLLAGTISGNLYLWELSSGILLNVLSAHYQS--ITCLKFSD--DGSHIITGSKDGAVLVWLLTDLV 156 (476)
T ss_pred ccceeeeecCCCceEEEeecccCcEEEEEeccccHHHHHHhhccc--eeEEEEeC--CCcEEEecCCCccEEEEEEEeec
Confidence 578999999999999999999999999999999999999888855 99999999 9999999999999999987432
Q ss_pred ----CCCCCCeeeeecceeeEEEeeeeeccccccccCCCCcceeeccCCceeeecCCCCCCceeccCCCceEEEeecCcC
Q 021291 97 ----GLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQLS 172 (314)
Q Consensus 97 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~ 172 (314)
....+|...+..+......+.+. +.+...++ .+.+.|.
T Consensus 157 ~a~~~~~~~p~~~f~~HtlsITDl~ig------------------------------------~Gg~~~rl--~TaS~D~ 198 (476)
T KOG0646|consen 157 SADNDHSVKPLHIFSDHTLSITDLQIG------------------------------------SGGTNARL--YTASEDR 198 (476)
T ss_pred ccccCCCccceeeeccCcceeEEEEec------------------------------------CCCccceE--EEecCCc
Confidence 11112333333333222222211 22222333 3778899
Q ss_pred eEEEEecCCCceeeeecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEeecCCcEEEEEccCCC----------
Q 021291 173 EVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPG---------- 242 (314)
Q Consensus 173 ~i~vwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~---------- 242 (314)
++++||+..+..+.++.. ...+.+++ .+|. ++ .+++|+++|.|.+.++....
T Consensus 199 t~k~wdlS~g~LLlti~f-------------p~si~av~-lDpa---e~-~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~ 260 (476)
T KOG0646|consen 199 TIKLWDLSLGVLLLTITF-------------PSSIKAVA-LDPA---ER-VVYIGTEEGKIFQNLLFKLSGQSAGVNQKG 260 (476)
T ss_pred eEEEEEeccceeeEEEec-------------CCcceeEE-Eccc---cc-EEEecCCcceEEeeehhcCCcccccccccc
Confidence 999999999999888773 34677777 8887 44 89999999999998875421
Q ss_pred -----CceEeeecCCc--ceEEEEEeCCCCeEEEecCCCcEEEEecCCCeeeEe
Q 021291 243 -----IPLTAMKVHLE--PVLCLSIDESCNGGISGGADQKIVLYNLDHSTYVLF 289 (314)
Q Consensus 243 -----~~~~~~~~h~~--~v~~~~~~~~~~~l~s~s~dg~i~iw~~~~~~~~~~ 289 (314)
..+..+.+|.. +|+|++.+-||.+|++|+.||+|.|||+.+.+.+.+
T Consensus 261 ~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLlSGd~dg~VcvWdi~S~Q~iRt 314 (476)
T KOG0646|consen 261 RHEENTQINVLVGHENESAITCLAISTDGTLLLSGDEDGKVCVWDIYSKQCIRT 314 (476)
T ss_pred cccccceeeeeccccCCcceeEEEEecCccEEEeeCCCCCEEEEecchHHHHHH
Confidence 23455778988 999999999999999999999999999998876654
No 87
>PTZ00421 coronin; Provisional
Probab=99.94 E-value=3.9e-24 Score=180.70 Aligned_cols=206 Identities=17% Similarity=0.214 Sum_probs=154.0
Q ss_pred CCCceeEEEEccCCCEEEEecCCCeEEEEeCCCCeEE-------------EEEeccCCcccEEEEEEcccCCCCeEEEee
Q 021291 17 HRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTV-------------SSSWVHSAAHGIVSVATGPSIGLNKVISQG 83 (314)
Q Consensus 17 h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~-------------~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~ 83 (314)
|-..|.....++++..+++++.+.....|+...+..+ ..+.+|.. .|.+++|+|. ++++|++|+
T Consensus 19 ~~~~i~~~~~~~d~~~~~~~n~~~~a~~w~~~gg~~v~~~~~~G~~~~~~~~l~GH~~--~V~~v~fsP~-d~~~LaSgS 95 (493)
T PTZ00421 19 HFLNVTPSTALWDCSNTIACNDRFIAVPWQQLGSTAVLKHTDYGKLASNPPILLGQEG--PIIDVAFNPF-DPQKLFTAS 95 (493)
T ss_pred ceeccccccccCCCCCcEeECCceEEEEEecCCceEEeeccccccCCCCCceEeCCCC--CEEEEEEcCC-CCCEEEEEe
Confidence 3455666777778777888888888888876544322 13567774 4999999985 457999999
Q ss_pred cCCeEEEEeCCCCCCCC---CCeeeeecceeeEEEeeeeeccccccccCCCCcceeeccCCceeeecCCCCCC----cee
Q 021291 84 RDGTVKCWDIENGGLSS---NPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSK----DDV 156 (314)
Q Consensus 84 ~dg~v~iwd~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~ 156 (314)
.|++|++||+.++.... .++..+ .+|.. ++|
T Consensus 96 ~DgtIkIWdi~~~~~~~~~~~~l~~L------------------------------------------~gH~~~V~~l~f 133 (493)
T PTZ00421 96 EDGTIMGWGIPEEGLTQNISDPIVHL------------------------------------------QGHTKKVGIVSF 133 (493)
T ss_pred CCCEEEEEecCCCccccccCcceEEe------------------------------------------cCCCCcEEEEEe
Confidence 99999999998754211 111111 22222 679
Q ss_pred ccCCCceEEEeecCcCeEEEEecCCCceeeeecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEeecCCcEEEE
Q 021291 157 PAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVW 236 (314)
Q Consensus 157 ~~~~~~~~~~~g~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vw 236 (314)
+|++..+++ +++.|++|+|||+++++.+..+. +| ...+.++. |+|+ |. +|++++.|+.|++|
T Consensus 134 ~P~~~~iLa-Sgs~DgtVrIWDl~tg~~~~~l~--------~h----~~~V~sla-~spd---G~-lLatgs~Dg~IrIw 195 (493)
T PTZ00421 134 HPSAMNVLA-SAGADMVVNVWDVERGKAVEVIK--------CH----SDQITSLE-WNLD---GS-LLCTTSKDKKLNII 195 (493)
T ss_pred CcCCCCEEE-EEeCCCEEEEEECCCCeEEEEEc--------CC----CCceEEEE-EECC---CC-EEEEecCCCEEEEE
Confidence 998766665 56679999999999998888777 66 34688887 9998 55 89999999999999
Q ss_pred EccCCCCceEeeecCCcc-eEEEEEeCCCCeEEEec----CCCcEEEEecCCCee
Q 021291 237 DIRNPGIPLTAMKVHLEP-VLCLSIDESCNGGISGG----ADQKIVLYNLDHSTY 286 (314)
Q Consensus 237 d~~~~~~~~~~~~~h~~~-v~~~~~~~~~~~l~s~s----~dg~i~iw~~~~~~~ 286 (314)
|+++ ++.+..+.+|... +..+.|.+++..+++++ .|+.|++||+++...
T Consensus 196 D~rs-g~~v~tl~~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~~ 249 (493)
T PTZ00421 196 DPRD-GTIVSSVEAHASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMAS 249 (493)
T ss_pred ECCC-CcEEEEEecCCCCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCCCC
Confidence 9998 7888889999765 45677888877777654 479999999987653
No 88
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.94 E-value=5.8e-26 Score=185.62 Aligned_cols=222 Identities=21% Similarity=0.333 Sum_probs=175.4
Q ss_pred ceEEecCCCCceeEEEEccCCCEEEEecCCCeEEEEeCCCC--eEEEEEeccCCcccEEEEEE-cccCCCCeEEEeecCC
Q 021291 10 PVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQH--RTVSSSWVHSAAHGIVSVAT-GPSIGLNKVISQGRDG 86 (314)
Q Consensus 10 ~~~~l~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~--~~~~~~~~~~~~~~v~~~~~-~~~~~~~~l~s~~~dg 86 (314)
.+..++.|.+.|+.++...+++.|+++|.|-+|++|+...+ -++.+++.|. +.|.|+++ .+ +..++++|+-|+
T Consensus 65 ~~asme~HsDWVNDiiL~~~~~tlIS~SsDtTVK~W~~~~~~~~c~stir~H~--DYVkcla~~ak--~~~lvaSgGLD~ 140 (735)
T KOG0308|consen 65 YIASMEHHSDWVNDIILCGNGKTLISASSDTTVKVWNAHKDNTFCMSTIRTHK--DYVKCLAYIAK--NNELVASGGLDR 140 (735)
T ss_pred hhhhhhhhHhHHhhHHhhcCCCceEEecCCceEEEeecccCcchhHhhhhccc--chheeeeeccc--CceeEEecCCCc
Confidence 47889999999999999999999999999999999999877 5788888898 55999999 56 778999999999
Q ss_pred eEEEEeCCCCCCCCCCeeeeecceeeEEEeeeeeccccccccCCCCcceeeccCCceeeecCCCCCCceeccCCCceEEE
Q 021291 87 TVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAV 166 (314)
Q Consensus 87 ~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (314)
.|.+||++++.... +... .....+.. ..+....+|. ++.++.| .+++
T Consensus 141 ~IflWDin~~~~~l--~~s~--n~~t~~sl-----------~sG~k~siYS----------------LA~N~t~--t~iv 187 (735)
T KOG0308|consen 141 KIFLWDINTGTATL--VASF--NNVTVNSL-----------GSGPKDSIYS----------------LAMNQTG--TIIV 187 (735)
T ss_pred cEEEEEccCcchhh--hhhc--cccccccC-----------CCCCccceee----------------eecCCcc--eEEE
Confidence 99999999873200 1011 11111100 0011111111 3344555 3445
Q ss_pred eecCcCeEEEEecCCCceeeeecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEeecCCcEEEEEccCCCCceE
Q 021291 167 AGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLT 246 (314)
Q Consensus 167 ~g~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~~ 246 (314)
+|+.++.+++||.++.+.+..+. ||.+ .+..+. .++| |. .+++++.||+|++||+.. .+++.
T Consensus 188 sGgtek~lr~wDprt~~kimkLr--------GHTd----NVr~ll-~~dD---Gt-~~ls~sSDgtIrlWdLgq-QrCl~ 249 (735)
T KOG0308|consen 188 SGGTEKDLRLWDPRTCKKIMKLR--------GHTD----NVRVLL-VNDD---GT-RLLSASSDGTIRLWDLGQ-QRCLA 249 (735)
T ss_pred ecCcccceEEeccccccceeeee--------cccc----ceEEEE-EcCC---CC-eEeecCCCceEEeeeccc-cceee
Confidence 78888999999999999999998 8855 556665 7777 65 899999999999999998 89999
Q ss_pred eeecCCcceEEEEEeCCCCeEEEecCCCcEEEEecCCCee
Q 021291 247 AMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTY 286 (314)
Q Consensus 247 ~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~iw~~~~~~~ 286 (314)
++..|.+.|+++..+++-..+.+|+.||.|..=|+.+...
T Consensus 250 T~~vH~e~VWaL~~~~sf~~vYsG~rd~~i~~Tdl~n~~~ 289 (735)
T KOG0308|consen 250 TYIVHKEGVWALQSSPSFTHVYSGGRDGNIYRTDLRNPAK 289 (735)
T ss_pred eEEeccCceEEEeeCCCcceEEecCCCCcEEecccCCchh
Confidence 9999999999999999999999999999999999998543
No 89
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.94 E-value=4.3e-25 Score=166.36 Aligned_cols=242 Identities=16% Similarity=0.218 Sum_probs=159.3
Q ss_pred eEEecCCCCceeEEEEccCCCEEEEecCCCeEEEEeCCCCeE--EEEEeccCCcccEEEEEEcccCCCCeEE-EeecCCe
Q 021291 11 VAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRT--VSSSWVHSAAHGIVSVATGPSIGLNKVI-SQGRDGT 87 (314)
Q Consensus 11 ~~~l~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~~~l~-s~~~dg~ 87 (314)
+.+|+||.+.|++++|+.||++|+|++.|++|+||++++-.. -+.++..-..+.-+.+.|.| |-.-++ ++-...+
T Consensus 79 ~~~LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~dhpT~V~Fap--Dc~s~vv~~~~g~~ 156 (420)
T KOG2096|consen 79 VSVLKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVEYDHPTRVVFAP--DCKSVVVSVKRGNK 156 (420)
T ss_pred hhhhhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhccccCCCceEEEECC--CcceEEEEEccCCE
Confidence 557889999999999999999999999999999999876321 11222211113368999999 766544 5556678
Q ss_pred EEEEeCCCCCCCCCCeeeeecceeeEEEeeeeeccccccccCCCCcceeeccCCceeeecCCCCCC--ceeccCCCceEE
Q 021291 88 VKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSK--DDVPAEGPKYMA 165 (314)
Q Consensus 88 v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~ 165 (314)
+++|-+...+--.-+....+.....+ . ..|+- +.+--.+...++
T Consensus 157 l~vyk~~K~~dG~~~~~~v~~D~~~f-----~-----------------------------~kh~v~~i~iGiA~~~k~i 202 (420)
T KOG2096|consen 157 LCVYKLVKKTDGSGSHHFVHIDNLEF-----E-----------------------------RKHQVDIINIGIAGNAKYI 202 (420)
T ss_pred EEEEEeeecccCCCCccccccccccc-----c-----------------------------hhcccceEEEeecCCceEE
Confidence 99998754332110000000000000 0 00000 111111222333
Q ss_pred EeecCcCeEEEEecCCCceeeeecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEeecCCcEEEEEccCC----
Q 021291 166 VAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNP---- 241 (314)
Q Consensus 166 ~~g~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~---- 241 (314)
.+++.|..|.+|+++ |+.+..+.. . ...-+.. +.+|+ |+ ++++++..-.|++|..--.
T Consensus 203 msas~dt~i~lw~lk-Gq~L~~idt--------n----q~~n~~a-avSP~---GR-Fia~~gFTpDVkVwE~~f~kdG~ 264 (420)
T KOG2096|consen 203 MSASLDTKICLWDLK-GQLLQSIDT--------N----QSSNYDA-AVSPD---GR-FIAVSGFTPDVKVWEPIFTKDGT 264 (420)
T ss_pred EEecCCCcEEEEecC-Cceeeeecc--------c----cccccce-eeCCC---Cc-EEEEecCCCCceEEEEEeccCcc
Confidence 477789999999999 887777662 1 1112222 48998 77 8888888889999986320
Q ss_pred ---CCceEeeecCCcceEEEEEeCCCCeEEEecCCCcEEEEecCCCeeeE-------e-----------eeeeeecCCCc
Q 021291 242 ---GIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTYVL-------F-----------GIGFVCDQEGN 300 (314)
Q Consensus 242 ---~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~iw~~~~~~~~~-------~-----------~~~~~~~~~~~ 300 (314)
-..+.+++||...|+.++|+++...++|.|.||+++|||++-.-..- . ...++.+|+|.
T Consensus 265 fqev~rvf~LkGH~saV~~~aFsn~S~r~vtvSkDG~wriwdtdVrY~~~qDpk~Lk~g~~pl~aag~~p~RL~lsP~g~ 344 (420)
T KOG2096|consen 265 FQEVKRVFSLKGHQSAVLAAAFSNSSTRAVTVSKDGKWRIWDTDVRYEAGQDPKILKEGSAPLHAAGSEPVRLELSPSGD 344 (420)
T ss_pred hhhhhhhheeccchhheeeeeeCCCcceeEEEecCCcEEEeeccceEecCCCchHhhcCCcchhhcCCCceEEEeCCCCc
Confidence 13456789999999999999999999999999999999987432221 1 24567789998
Q ss_pred eeceee
Q 021291 301 KFGTTW 306 (314)
Q Consensus 301 ~~~~~w 306 (314)
.|+.+.
T Consensus 345 ~lA~s~ 350 (420)
T KOG2096|consen 345 SLAVSF 350 (420)
T ss_pred EEEeec
Confidence 887654
No 90
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.94 E-value=5.6e-26 Score=185.71 Aligned_cols=220 Identities=19% Similarity=0.274 Sum_probs=162.0
Q ss_pred CCCcee---EEEEcc-CCCEEEEecCCCeEEEEeCCCCe------EEEEEeccCCcccEEEEEEcccCCCCeEEEeecCC
Q 021291 17 HRASVT---DVCFHQ-TKPILFAGTTGGELRIWDTVQHR------TVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDG 86 (314)
Q Consensus 17 h~~~v~---~~~~~~-~~~~l~s~~~dg~v~iwd~~~~~------~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg 86 (314)
|...|. .+..+. .+++|+|||.||.|++|++.... .+.+++.|. +.|..+.... +++.|+++|.|-
T Consensus 20 n~~~v~~~~~Lq~da~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asme~Hs--DWVNDiiL~~--~~~tlIS~SsDt 95 (735)
T KOG0308|consen 20 NRNGVNITKALQLDAPNGRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASMEHHS--DWVNDIILCG--NGKTLISASSDT 95 (735)
T ss_pred ccccccchhhccccCCCCceEEecCCCceEEEeccccccCCcccchhhhhhhhH--hHHhhHHhhc--CCCceEEecCCc
Confidence 445555 455554 67789999999999999986532 367778888 6699999988 889999999999
Q ss_pred eEEEEeCCCCCCCCCCeeeeecceeeEEEeeeeeccccccccCCCCcceeeccCCceeeecCCCCCCceeccCCCceEEE
Q 021291 87 TVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAV 166 (314)
Q Consensus 87 ~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (314)
+|++|+........ .-++..+...... +++- ..+..+++
T Consensus 96 TVK~W~~~~~~~~c--~stir~H~DYVkc--------------------------------------la~~-ak~~~lva 134 (735)
T KOG0308|consen 96 TVKVWNAHKDNTFC--MSTIRTHKDYVKC--------------------------------------LAYI-AKNNELVA 134 (735)
T ss_pred eEEEeecccCcchh--Hhhhhcccchhee--------------------------------------eeec-ccCceeEE
Confidence 99999998763111 1122222111111 2221 22334566
Q ss_pred eecCcCeEEEEecCCCc--eeeeecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEeecCCcEEEEEccCCCCc
Q 021291 167 AGEQLSEVEIWDLNTAE--RCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIP 244 (314)
Q Consensus 167 ~g~~d~~i~vwd~~~~~--~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~ 244 (314)
+|+.|+.|.+||+.++. .+.++......... ......+++++ .++. |. .|++|+.++.|++||.++ .+.
T Consensus 135 SgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~---sG~k~siYSLA-~N~t---~t-~ivsGgtek~lr~wDprt-~~k 205 (735)
T KOG0308|consen 135 SGGLDRKIFLWDINTGTATLVASFNNVTVNSLG---SGPKDSIYSLA-MNQT---GT-IIVSGGTEKDLRLWDPRT-CKK 205 (735)
T ss_pred ecCCCccEEEEEccCcchhhhhhccccccccCC---CCCccceeeee-cCCc---ce-EEEecCcccceEEecccc-ccc
Confidence 89999999999999873 34433321111111 12355788887 7776 43 899999999999999999 788
Q ss_pred eEeeecCCcceEEEEEeCCCCeEEEecCCCcEEEEecCCCeeeEee
Q 021291 245 LTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTYVLFG 290 (314)
Q Consensus 245 ~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~iw~~~~~~~~~~~ 290 (314)
+..+.||.+.|..+..+.+|..++|+|.||+|++||+...+++.+.
T Consensus 206 imkLrGHTdNVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQrCl~T~ 251 (735)
T KOG0308|consen 206 IMKLRGHTDNVRVLLVNDDGTRLLSASSDGTIRLWDLGQQRCLATY 251 (735)
T ss_pred eeeeeccccceEEEEEcCCCCeEeecCCCceEEeeeccccceeeeE
Confidence 8889999999999999999999999999999999999999988764
No 91
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.94 E-value=3.5e-25 Score=162.60 Aligned_cols=264 Identities=26% Similarity=0.380 Sum_probs=184.5
Q ss_pred CCCCCceEEecCCCCceeEEEEccCCCEEEEecCCCeEEEEeCCCCeEEEEEeccCCcccEEEEEEcccCCCCeEEEeec
Q 021291 5 PPPPDPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGR 84 (314)
Q Consensus 5 ~~~~~~~~~l~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~ 84 (314)
++|+.|..+|++|.+.|+++.|..++ +|++|..-|.|++|++.+.+.+..++.+.. ..|+.+.-.| + ..|.+-+.
T Consensus 1 ~~pPdP~fvLRp~~~~v~s~~fqa~~-rL~sg~~~G~V~~w~lqt~r~~~~~r~~g~-~~it~lq~~p--~-d~l~tqgR 75 (323)
T KOG0322|consen 1 MVPPDPFFVLRPHSSSVTSVLFQANE-RLMSGLSVGIVKMWVLQTERDLPLIRLFGR-LFITNLQSIP--N-DSLDTQGR 75 (323)
T ss_pred CCCCCCeeEeccccchheehhhccch-hhhcccccceEEEEEeecCccchhhhhhcc-ceeeceeecC--C-cchhhcCC
Confidence 35679999999999999999998877 489999999999999999888888884432 5699999888 5 88999999
Q ss_pred CCeEEEEeCCCCCCCCCCeeeeecceeeEEEeeeeeccccc--c-ccCC-CCcceeeccCCceeeec-----CCCCCC--
Q 021291 85 DGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYAN--A-KQAN-EPKDCYEREVGETVDTD-----SLCDSK-- 153 (314)
Q Consensus 85 dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-~~~~-~~~~~~~~~~~~~~~~~-----~~~~~~-- 153 (314)
|+.+.+|++.....+. +..+..+...+|.++....+... . .... +....-..+-+...... ..+..+
T Consensus 76 d~~L~lw~ia~s~~i~--i~Si~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D~g~~tqv~i~dd~~~~Klgsv 153 (323)
T KOG0322|consen 76 DPLLILWTIAYSAFIS--IHSIVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQDGGDTTQVQIADDSERSKLGSV 153 (323)
T ss_pred CceEEEEEccCcceEE--EeeeeccccccccceeccCCCcchhheecCCcccchhhhhccCccceeEccCchhccccCce
Confidence 9999999998876554 44555667777877766544332 0 0000 00000000111111100 111111
Q ss_pred ceec---cCCCceEEEeecCcCeEEEEecCCCceeeeecccccCC--CCCcCCCC-------------------------
Q 021291 154 DDVP---AEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGG--SPNFSSKG------------------------- 203 (314)
Q Consensus 154 ~~~~---~~~~~~~~~~g~~d~~i~vwd~~~~~~~~~~~~~~~~~--~~~h~~~~------------------------- 203 (314)
+++. .++.++++++|.++|.+.+||+.++..+..++...... ...|..++
T Consensus 154 mc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGisgga~dkl~~~S 233 (323)
T KOG0322|consen 154 MCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGISGGADDKLVMYS 233 (323)
T ss_pred eeeeccccccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcCCcCCCccccceeee
Confidence 4444 45677888899999999999999875444443211100 00111000
Q ss_pred -----------------CceeeeEEEecCCCCCCceEEEEeecCCcEEEEEccCCCCceEeeecCCcceEEEEEeCCCCe
Q 021291 204 -----------------RGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNG 266 (314)
Q Consensus 204 -----------------~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~ 266 (314)
+..+..+. +.|| ++ ++++++.|+.|+||+.++ .+++..++.|.+.|++++|+|+...
T Consensus 234 l~~s~gslq~~~e~~lknpGv~gvr-IRpD---~K-IlATAGWD~RiRVyswrt-l~pLAVLkyHsagvn~vAfspd~~l 307 (323)
T KOG0322|consen 234 LNHSTGSLQIRKEITLKNPGVSGVR-IRPD---GK-ILATAGWDHRIRVYSWRT-LNPLAVLKYHSAGVNAVAFSPDCEL 307 (323)
T ss_pred eccccCcccccceEEecCCCccceE-EccC---Cc-EEeecccCCcEEEEEecc-CCchhhhhhhhcceeEEEeCCCCch
Confidence 00112222 5555 55 899999999999999999 9999999999999999999999999
Q ss_pred EEEecCCCcEEEEec
Q 021291 267 GISGGADQKIVLYNL 281 (314)
Q Consensus 267 l~s~s~dg~i~iw~~ 281 (314)
+|++|.|+.|.+|++
T Consensus 308 mAaaskD~rISLWkL 322 (323)
T KOG0322|consen 308 MAAASKDARISLWKL 322 (323)
T ss_pred hhhccCCceEEeeec
Confidence 999999999999986
No 92
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=99.94 E-value=4.9e-25 Score=160.72 Aligned_cols=258 Identities=15% Similarity=0.152 Sum_probs=200.2
Q ss_pred EEecCCCCceeEEEEcc---CCCEEEEecCCCeEEEEeCCCCeEEEEEeccCCcccEEEEEEcccCCCCeEEEeecCCeE
Q 021291 12 AVLRGHRASVTDVCFHQ---TKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTV 88 (314)
Q Consensus 12 ~~l~~h~~~v~~~~~~~---~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~v 88 (314)
.+..||+.+|..++|+| +|-+|++++.||.-.+-+-++|..+.++.+|.++ |++...+. +..+-++++.|-+-
T Consensus 8 l~c~ghtrpvvdl~~s~itp~g~flisa~kd~~pmlr~g~tgdwigtfeghkga--vw~~~l~~--na~~aasaaadfta 83 (334)
T KOG0278|consen 8 LTCHGHTRPVVDLAFSPITPDGYFLISASKDGKPMLRNGDTGDWIGTFEGHKGA--VWSATLNK--NATRAASAAADFTA 83 (334)
T ss_pred eEEcCCCcceeEEeccCCCCCceEEEEeccCCCchhccCCCCCcEEeeeccCcc--eeeeecCc--hhhhhhhhcccchh
Confidence 46789999999999997 8889999999999999999999999999999966 99999988 87888899999999
Q ss_pred EEEeCCCCCCCCCCeeee-ecceeeEEEeeeeeccccccccCCCC---cceeeccCCceeeecCCCCCC----ceeccCC
Q 021291 89 KCWDIENGGLSSNPSLTI-KTNSYHFCKLSLVKEPYANAKQANEP---KDCYEREVGETVDTDSLCDSK----DDVPAEG 160 (314)
Q Consensus 89 ~iwd~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~----~~~~~~~ 160 (314)
++||.-++..+. .+ +.+-...+.|+- .......++. .++++++..+.....+.+|.. +-|....
T Consensus 84 kvw~a~tgdelh----sf~hkhivk~~af~~----ds~~lltgg~ekllrvfdln~p~App~E~~ghtg~Ir~v~wc~eD 155 (334)
T KOG0278|consen 84 KVWDAVTGDELH----SFEHKHIVKAVAFSQ----DSNYLLTGGQEKLLRVFDLNRPKAPPKEISGHTGGIRTVLWCHED 155 (334)
T ss_pred hhhhhhhhhhhh----hhhhhheeeeEEecc----cchhhhccchHHHhhhhhccCCCCCchhhcCCCCcceeEEEeccC
Confidence 999999987533 22 223334444443 3333334443 445566666666777788877 7788777
Q ss_pred CceEEEeecCcCeEEEEecCCCceeeeecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEeecCCcEEEEEccC
Q 021291 161 PKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRN 240 (314)
Q Consensus 161 ~~~~~~~g~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~ 240 (314)
+.+| +++.|++||+||.+++..++++.. ...+.++- ++++ |+ +++-...+.|.+||..+
T Consensus 156 ~~iL--SSadd~tVRLWD~rTgt~v~sL~~-------------~s~VtSlE-vs~d---G~--ilTia~gssV~Fwdaks 214 (334)
T KOG0278|consen 156 KCIL--SSADDKTVRLWDHRTGTEVQSLEF-------------NSPVTSLE-VSQD---GR--ILTIAYGSSVKFWDAKS 214 (334)
T ss_pred ceEE--eeccCCceEEEEeccCcEEEEEec-------------CCCCccee-eccC---CC--EEEEecCceeEEecccc
Confidence 6665 447799999999999999999874 44677776 8887 65 44444567899999998
Q ss_pred CCCceEeeecCCcceEEEEEeCCCCeEEEecCCCcEEEEecCCCeeeEe--------eeeeeecCCCceece
Q 021291 241 PGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTYVLF--------GIGFVCDQEGNKFGT 304 (314)
Q Consensus 241 ~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~iw~~~~~~~~~~--------~~~~~~~~~~~~~~~ 304 (314)
-.+++.++. .-.|.+...+|+...++.|+.|..++.||+.++..+-. ...++++|+|..++.
T Consensus 215 -f~~lKs~k~-P~nV~SASL~P~k~~fVaGged~~~~kfDy~TgeEi~~~nkgh~gpVhcVrFSPdGE~yAs 284 (334)
T KOG0278|consen 215 -FGLLKSYKM-PCNVESASLHPKKEFFVAGGEDFKVYKFDYNTGEEIGSYNKGHFGPVHCVRFSPDGELYAS 284 (334)
T ss_pred -ccceeeccC-ccccccccccCCCceEEecCcceEEEEEeccCCceeeecccCCCCceEEEEECCCCceeec
Confidence 666666653 56788999999999999999999999999999988764 233567788866553
No 93
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.94 E-value=3.6e-26 Score=190.20 Aligned_cols=243 Identities=19% Similarity=0.273 Sum_probs=196.0
Q ss_pred eeEEEEcc-CCCEEEEecCCCeEEEEeCCC---CeEEEEEeccCCcccEEEEEEcccCCCCeEEEeecCCeEEEEeCCCC
Q 021291 21 VTDVCFHQ-TKPILFAGTTGGELRIWDTVQ---HRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENG 96 (314)
Q Consensus 21 v~~~~~~~-~~~~l~s~~~dg~v~iwd~~~---~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~ 96 (314)
+..++|+. +.++|||++..|.|.+||+.. .+.+..+..|+.. |.++.|++. ...+|++||.||+|++||++..
T Consensus 90 ~~DVkW~~~~~NlIAT~s~nG~i~vWdlnk~~rnk~l~~f~EH~Rs--~~~ldfh~t-ep~iliSGSQDg~vK~~DlR~~ 166 (839)
T KOG0269|consen 90 AADVKWGQLYSNLIATCSTNGVISVWDLNKSIRNKLLTVFNEHERS--ANKLDFHST-EPNILISGSQDGTVKCWDLRSK 166 (839)
T ss_pred hhhcccccchhhhheeecCCCcEEEEecCccccchhhhHhhhhccc--eeeeeeccC-CccEEEecCCCceEEEEeeecc
Confidence 45577876 678999999999999999987 5666778888855 999999986 5589999999999999999987
Q ss_pred CCCCCCeeeeecceeeEEEeeeeeccccccccCCCCcceeeccCCceeeecCCCCCC----ceeccCCCceEEEeecCcC
Q 021291 97 GLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSK----DDVPAEGPKYMAVAGEQLS 172 (314)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~g~~d~ 172 (314)
+... .+...........|++..........+++....|+++........+..|.+ +.|+|++. ++| +|+.|+
T Consensus 167 ~S~~--t~~~nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~GpV~c~nwhPnr~-~lA-TGGRDK 242 (839)
T KOG0269|consen 167 KSKS--TFRSNSESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPDRCEKKLTAHNGPVLCLNWHPNRE-WLA-TGGRDK 242 (839)
T ss_pred cccc--cccccchhhhceeeccCCCceEEEecCCceEEEeeccCchhHHHHhhcccCceEEEeecCCCc-eee-ecCCCc
Confidence 7644 444556667777788887777778888999999999999999999999999 88999654 444 788999
Q ss_pred eEEEEecCCCceeeeecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEee--cCCcEEEEEccCCCCceEeeec
Q 021291 173 EVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGY--EDGSILVWDIRNPGIPLTAMKV 250 (314)
Q Consensus 173 ~i~vwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~--~dg~i~vwd~~~~~~~~~~~~~ 250 (314)
.|+|||+.+.+....... ....++..+. |.|..+ ..|++++ .|-.|+|||++.+--|..++..
T Consensus 243 ~vkiWd~t~~~~~~~~tI-----------nTiapv~rVk-WRP~~~---~hLAtcsmv~dtsV~VWDvrRPYIP~~t~~e 307 (839)
T KOG0269|consen 243 MVKIWDMTDSRAKPKHTI-----------NTIAPVGRVK-WRPARS---YHLATCSMVVDTSVHVWDVRRPYIPYATFLE 307 (839)
T ss_pred cEEEEeccCCCccceeEE-----------eecceeeeee-eccCcc---chhhhhhccccceEEEEeeccccccceeeec
Confidence 999999986654322221 1244677787 999854 3677765 4678999999988899999999
Q ss_pred CCcceEEEEE-eCCCCeEEEecCCCcEEEEecCCCe
Q 021291 251 HLEPVLCLSI-DESCNGGISGGADQKIVLYNLDHST 285 (314)
Q Consensus 251 h~~~v~~~~~-~~~~~~l~s~s~dg~i~iw~~~~~~ 285 (314)
|...++.++| +.+...|.+++.||.|..-.++...
T Consensus 308 H~~~vt~i~W~~~d~~~l~s~sKD~tv~qh~~knat 343 (839)
T KOG0269|consen 308 HTDSVTGIAWDSGDRINLWSCSKDGTVLQHLFKNAT 343 (839)
T ss_pred cCccccceeccCCCceeeEeecCccHHHHhhhhccc
Confidence 9999999999 5566689999999999887666554
No 94
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.93 E-value=2.2e-24 Score=170.88 Aligned_cols=207 Identities=19% Similarity=0.274 Sum_probs=161.6
Q ss_pred ceEEecCCCCceeEEEEcc-CCCEEEEecCCCeEEEEeCCCCeEEEEEeccCCcccEEEEEEcccCCCCeEEEeecCCeE
Q 021291 10 PVAVLRGHRASVTDVCFHQ-TKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTV 88 (314)
Q Consensus 10 ~~~~l~~h~~~v~~~~~~~-~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~v 88 (314)
.++.+++|+.+|..+.|+| ++..|++|+.|+.+++||+.+......+.+|+ +.|.|.+|+|. ++..++|||.||+|
T Consensus 102 iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v~~~l~~ht--DYVR~g~~~~~-~~hivvtGsYDg~v 178 (487)
T KOG0310|consen 102 ILRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYVQAELSGHT--DYVRCGDISPA-NDHIVVTGSYDGKV 178 (487)
T ss_pred HHHHHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCcEEEEEecCCc--ceeEeeccccC-CCeEEEecCCCceE
Confidence 4667889999999999999 66788999999999999999988777888998 55999999995 34689999999999
Q ss_pred EEEeCCCCCCCCCCeeeeecceeeEEEeeeeeccccccccCCCCcceeeccCCceeeecCCCCCCceeccCCCceEEEee
Q 021291 89 KCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAG 168 (314)
Q Consensus 89 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 168 (314)
++||++... .++.++........ +.+-|.|. +++.+|
T Consensus 179 rl~DtR~~~---~~v~elnhg~pVe~---------------------------------------vl~lpsgs-~iasAg 215 (487)
T KOG0310|consen 179 RLWDTRSLT---SRVVELNHGCPVES---------------------------------------VLALPSGS-LIASAG 215 (487)
T ss_pred EEEEeccCC---ceeEEecCCCceee---------------------------------------EEEcCCCC-EEEEcC
Confidence 999999864 12444443322221 33556665 444455
Q ss_pred cCcCeEEEEecCCCcee-eeecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEeecCCcEEEEEccCCCCceEe
Q 021291 169 EQLSEVEIWDLNTAERC-TRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTA 247 (314)
Q Consensus 169 ~~d~~i~vwd~~~~~~~-~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~~~ 247 (314)
+ ..|++||+-+|... ..+. .| .-.++|+. +..+ +. .|++|+.|+.|++||+.+ .+.+..
T Consensus 216 G--n~vkVWDl~~G~qll~~~~--------~H----~KtVTcL~-l~s~---~~-rLlS~sLD~~VKVfd~t~-~Kvv~s 275 (487)
T KOG0310|consen 216 G--NSVKVWDLTTGGQLLTSMF--------NH----NKTVTCLR-LASD---ST-RLLSGSLDRHVKVFDTTN-YKVVHS 275 (487)
T ss_pred C--CeEEEEEecCCceehhhhh--------cc----cceEEEEE-eecC---Cc-eEeecccccceEEEEccc-eEEEEe
Confidence 4 78999999965543 3333 35 44788887 8776 34 899999999999999877 777777
Q ss_pred eecCCcceEEEEEeCCCCeEEEecCCCcEEEEecCC
Q 021291 248 MKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDH 283 (314)
Q Consensus 248 ~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~iw~~~~ 283 (314)
+. ..++|.+++.+|+++.++.|-.||.+.+=+...
T Consensus 276 ~~-~~~pvLsiavs~dd~t~viGmsnGlv~~rr~~~ 310 (487)
T KOG0310|consen 276 WK-YPGPVLSIAVSPDDQTVVIGMSNGLVSIRRREV 310 (487)
T ss_pred ee-cccceeeEEecCCCceEEEecccceeeeehhhc
Confidence 76 488999999999999999999999888764433
No 95
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.93 E-value=2.7e-24 Score=156.26 Aligned_cols=233 Identities=20% Similarity=0.232 Sum_probs=164.4
Q ss_pred CCceEEecCCCCceeEEEEcc--CCCEEEEecCCCeEEEEeCCCCeE--EEEEeccCCcccEEEEEEcccCCCCeEEEee
Q 021291 8 PDPVAVLRGHRASVTDVCFHQ--TKPILFAGTTGGELRIWDTVQHRT--VSSSWVHSAAHGIVSVATGPSIGLNKVISQG 83 (314)
Q Consensus 8 ~~~~~~l~~h~~~v~~~~~~~--~~~~l~s~~~dg~v~iwd~~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~ 83 (314)
.+++.+|.||.++|..++|.. .|.+||++++||.|.||.-++++- ......|. ..|.+++|.|..-|-.|++++
T Consensus 46 s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiWke~~g~w~k~~e~~~h~--~SVNsV~wapheygl~Lacas 123 (299)
T KOG1332|consen 46 SKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIWKEENGRWTKAYEHAAHS--ASVNSVAWAPHEYGLLLACAS 123 (299)
T ss_pred ceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEEEecCCCchhhhhhhhhhc--ccceeecccccccceEEEEee
Confidence 478999999999999999986 899999999999999999887753 34455676 559999999976677899999
Q ss_pred cCCeEEEEeCCCC-CCCCCCeeeeecceeeEEEeeeeeccccccccCCCCcceeeccCCceeeecCCCCCCceeccCC-C
Q 021291 84 RDGTVKCWDIENG-GLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEG-P 161 (314)
Q Consensus 84 ~dg~v~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 161 (314)
.||.|.|.+.++. ....+.+...+........+.+...+-.. +.-.|.. -
T Consensus 124 SDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa~~~g~~----------------------------~~~~~~~~~ 175 (299)
T KOG1332|consen 124 SDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPASAPGSL----------------------------VDQGPAAKV 175 (299)
T ss_pred CCCcEEEEEEcCCCCccchhhhhccccccceeeecCcCCCccc----------------------------cccCccccc
Confidence 9999999998765 22221122333333333333322111000 0000111 1
Q ss_pred ceEEEeecCcCeEEEEecCCCc--eeeeecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEeecCCcEEEEEcc
Q 021291 162 KYMAVAGEQLSEVEIWDLNTAE--RCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIR 239 (314)
Q Consensus 162 ~~~~~~g~~d~~i~vwd~~~~~--~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~ 239 (314)
+-|+ +|+.|..|+||+..+++ ...++. +|.+ .+..++ |.|.-.-.+.+|+++++||++.||..+
T Consensus 176 krlv-SgGcDn~VkiW~~~~~~w~~e~~l~--------~H~d----wVRDVA-waP~~gl~~s~iAS~SqDg~viIwt~~ 241 (299)
T KOG1332|consen 176 KRLV-SGGCDNLVKIWKFDSDSWKLERTLE--------GHKD----WVRDVA-WAPSVGLPKSTIASCSQDGTVIIWTKD 241 (299)
T ss_pred ceee-ccCCccceeeeecCCcchhhhhhhh--------hcch----hhhhhh-hccccCCCceeeEEecCCCcEEEEEec
Confidence 2244 67779999999988753 223345 7755 666666 988754455689999999999999887
Q ss_pred CCCCc--eEeeecCCcceEEEEEeCCCCeEEEecCCCcEEEEecCCC
Q 021291 240 NPGIP--LTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHS 284 (314)
Q Consensus 240 ~~~~~--~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~iw~~~~~ 284 (314)
....+ ...++.....+..+.|+..|+.|+.++.|+.|.+|.-+..
T Consensus 242 ~e~e~wk~tll~~f~~~~w~vSWS~sGn~LaVs~GdNkvtlwke~~~ 288 (299)
T KOG1332|consen 242 EEYEPWKKTLLEEFPDVVWRVSWSLSGNILAVSGGDNKVTLWKENVD 288 (299)
T ss_pred CccCcccccccccCCcceEEEEEeccccEEEEecCCcEEEEEEeCCC
Confidence 42222 2334456788999999999999999999999999976544
No 96
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.93 E-value=8.8e-25 Score=180.93 Aligned_cols=248 Identities=16% Similarity=0.171 Sum_probs=179.3
Q ss_pred CCCCceeEEEEccCCCEEEEecCCCeEEEEeCCCCeEEEEEeccCCcccEEEEEEccc-CCCCeEEEeecCCeEEEEeCC
Q 021291 16 GHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPS-IGLNKVISQGRDGTVKCWDIE 94 (314)
Q Consensus 16 ~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~~~l~s~~~dg~v~iwd~~ 94 (314)
+..-.+.+++.+|+|++||+|..-|+++||++.+-+....+..|+.+ |.|+.|+.. ...++|++++.|.-|+|||+.
T Consensus 457 d~r~G~R~~~vSp~gqhLAsGDr~GnlrVy~Lq~l~~~~~~eAHesE--ilcLeyS~p~~~~kLLASasrdRlIHV~Dv~ 534 (1080)
T KOG1408|consen 457 DSRFGFRALAVSPDGQHLASGDRGGNLRVYDLQELEYTCFMEAHESE--ILCLEYSFPVLTNKLLASASRDRLIHVYDVK 534 (1080)
T ss_pred CcccceEEEEECCCcceecccCccCceEEEEehhhhhhhheecccce--eEEEeecCchhhhHhhhhccCCceEEEEecc
Confidence 45567999999999999999999999999999999999999999955 999999853 134689999999999999997
Q ss_pred CCCCCCCCeeeeecceeeEEEeeeeeccccccccCCCCc-ceeeccCCceeeecCC------CCCC---ceeccCCCceE
Q 021291 95 NGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPK-DCYEREVGETVDTDSL------CDSK---DDVPAEGPKYM 164 (314)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~------~~~~---~~~~~~~~~~~ 164 (314)
..-...+ .+..+........|...+.... ....+... ..++......-...+. .+.. +++.|..++++
T Consensus 535 rny~l~q-tld~HSssITsvKFa~~gln~~-MiscGADksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k~v~ 612 (1080)
T KOG1408|consen 535 RNYDLVQ-TLDGHSSSITSVKFACNGLNRK-MISCGADKSIMFRVNQKASSGRLFPRHTQTLSKTTLYDMAVDPTSKLVV 612 (1080)
T ss_pred cccchhh-hhcccccceeEEEEeecCCceE-EEeccCchhhheehhccccCceeccccccccccceEEEeeeCCCcceEE
Confidence 6543221 2222233333333333221111 11111111 1111111100001111 1111 77778776544
Q ss_pred EEeecCcCeEEEEecCCCceeeeecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEeecCCcEEEEEccCCCCc
Q 021291 165 AVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIP 244 (314)
Q Consensus 165 ~~~g~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~ 244 (314)
++..|+.|+|||+.+++..+.|+. .| + ..+....+. ..|. |. |+++.+.|+++.++|.-+ +++
T Consensus 613 --t~cQDrnirif~i~sgKq~k~FKg-------s~-~-~eG~lIKv~-lDPS---gi-Y~atScsdktl~~~Df~s-gEc 675 (1080)
T KOG1408|consen 613 --TVCQDRNIRIFDIESGKQVKSFKG-------SR-D-HEGDLIKVI-LDPS---GI-YLATSCSDKTLCFVDFVS-GEC 675 (1080)
T ss_pred --EEecccceEEEeccccceeeeecc-------cc-c-CCCceEEEE-ECCC---cc-EEEEeecCCceEEEEecc-chh
Confidence 567799999999999999999983 22 1 245666776 8887 55 999999999999999998 999
Q ss_pred eEeeecCCcceEEEEEeCCCCeEEEecCCCcEEEEecCCC
Q 021291 245 LTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHS 284 (314)
Q Consensus 245 ~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~iw~~~~~ 284 (314)
+..+.||.+.|+.+.|.+|.+.|++.+.||.|.||.+...
T Consensus 676 vA~m~GHsE~VTG~kF~nDCkHlISvsgDgCIFvW~lp~~ 715 (1080)
T KOG1408|consen 676 VAQMTGHSEAVTGVKFLNDCKHLISVSGDGCIFVWKLPLT 715 (1080)
T ss_pred hhhhcCcchheeeeeecccchhheeecCCceEEEEECchh
Confidence 9999999999999999999999999999999999998753
No 97
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.93 E-value=1.3e-23 Score=154.16 Aligned_cols=230 Identities=11% Similarity=0.143 Sum_probs=173.7
Q ss_pred EecCCCCceeEEEEcc-CCCEEEEecCCCeEEEEeCCCCeEEEEEeccCCcccEEEEEEcccCCCCeEEEeecCCeEEEE
Q 021291 13 VLRGHRASVTDVCFHQ-TKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCW 91 (314)
Q Consensus 13 ~l~~h~~~v~~~~~~~-~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~v~iw 91 (314)
..+||.+.|-.++|+| ...+|++++.|.+|++||++.+++...+....+. .-+.|+| ++++++.++.|..|...
T Consensus 59 ~~~gh~~svdql~w~~~~~d~~atas~dk~ir~wd~r~~k~~~~i~~~~en---i~i~wsp--~g~~~~~~~kdD~it~i 133 (313)
T KOG1407|consen 59 VYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIWDIRSGKCTARIETKGEN---INITWSP--DGEYIAVGNKDDRITFI 133 (313)
T ss_pred cccCCCcchhhheeCCCCCcceEEecCCceEEEEEeccCcEEEEeeccCcc---eEEEEcC--CCCEEEEecCcccEEEE
Confidence 4578999999999999 6779999999999999999999999988766543 5789999 99999999999999999
Q ss_pred eCCCCCCCCCCeeeeecceeeEEEeeeeeccccccccCC-CCcceeeccCCceeeecCCCCCC----ceeccCCCceEEE
Q 021291 92 DIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQAN-EPKDCYEREVGETVDTDSLCDSK----DDVPAEGPKYMAV 166 (314)
Q Consensus 92 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~ 166 (314)
|.++.+......+.. ....+.+. ..........| +.+.+......+ ....+..|.. +.|+|+|+++.
T Consensus 134 d~r~~~~~~~~~~~~---e~ne~~w~--~~nd~Fflt~GlG~v~ILsypsLk-pv~si~AH~snCicI~f~p~GryfA-- 205 (313)
T KOG1407|consen 134 DARTYKIVNEEQFKF---EVNEISWN--NSNDLFFLTNGLGCVEILSYPSLK-PVQSIKAHPSNCICIEFDPDGRYFA-- 205 (313)
T ss_pred Eecccceeehhcccc---eeeeeeec--CCCCEEEEecCCceEEEEeccccc-cccccccCCcceEEEEECCCCceEe--
Confidence 999877654222211 12222232 12222222222 344444443333 3334556666 88999998764
Q ss_pred eecCcCeEEEEecCCCceeeeecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEeecCCcEEEEEccCCCCceE
Q 021291 167 AGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLT 246 (314)
Q Consensus 167 ~g~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~~ 246 (314)
+|+.|-.+.+||+...-+.+.+. .+ .-++..+. |+.+ |+ +||+|++|..|-|=++.+ +..+.
T Consensus 206 ~GsADAlvSLWD~~ELiC~R~is--------Rl----dwpVRTlS-FS~d---g~-~lASaSEDh~IDIA~vet-Gd~~~ 267 (313)
T KOG1407|consen 206 TGSADALVSLWDVDELICERCIS--------RL----DWPVRTLS-FSHD---GR-MLASASEDHFIDIAEVET-GDRVW 267 (313)
T ss_pred eccccceeeccChhHhhhheeec--------cc----cCceEEEE-eccC---cc-eeeccCccceEEeEeccc-CCeEE
Confidence 68889999999999988888887 34 33667776 9988 66 999999999999999998 77787
Q ss_pred eeecCCcceEEEEEeCCCCeEEEecCCC
Q 021291 247 AMKVHLEPVLCLSIDESCNGGISGGADQ 274 (314)
Q Consensus 247 ~~~~h~~~v~~~~~~~~~~~l~s~s~dg 274 (314)
+++ +.++...|+|+|...+||-++.|.
T Consensus 268 eI~-~~~~t~tVAWHPk~~LLAyA~ddk 294 (313)
T KOG1407|consen 268 EIP-CEGPTFTVAWHPKRPLLAYACDDK 294 (313)
T ss_pred Eee-ccCCceeEEecCCCceeeEEecCC
Confidence 776 688999999999999998777653
No 98
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.93 E-value=1.7e-22 Score=163.88 Aligned_cols=262 Identities=11% Similarity=0.050 Sum_probs=170.7
Q ss_pred CCCceEEecCCCCceeEEEEccCCCEE-EEecCCCeEEEEeCCCCeEEEEEeccCCcccEEEEEEcccCCCCeEEE-eec
Q 021291 7 PPDPVAVLRGHRASVTDVCFHQTKPIL-FAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVIS-QGR 84 (314)
Q Consensus 7 ~~~~~~~l~~h~~~v~~~~~~~~~~~l-~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s-~~~ 84 (314)
.+++++.+.+|.. +.+++|+|+++.+ ++++.++.|++||..+++....+..+. .+..++|+| +++.+++ ++.
T Consensus 20 t~~~~~~~~~~~~-~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~---~~~~~~~~~--~g~~l~~~~~~ 93 (300)
T TIGR03866 20 TLEVTRTFPVGQR-PRGITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTLPSGP---DPELFALHP--NGKILYIANED 93 (300)
T ss_pred CCceEEEEECCCC-CCceEECCCCCEEEEEECCCCeEEEEECCCCcEEEeccCCC---CccEEEECC--CCCEEEEEcCC
Confidence 3567778876654 6789999999876 567889999999999988877766543 256789999 8887754 456
Q ss_pred CCeEEEEeCCCCCCCCCCeeeeec-ceeeEEEeeeeeccccccccCCCCcceeeccCCceeeecCCCCCC--ceeccCCC
Q 021291 85 DGTVKCWDIENGGLSSNPSLTIKT-NSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSK--DDVPAEGP 161 (314)
Q Consensus 85 dg~v~iwd~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~ 161 (314)
|+.|++||+.+.+.+. .+.. .......+++.+...............++.............+.. ++|+|+++
T Consensus 94 ~~~l~~~d~~~~~~~~----~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~ 169 (300)
T TIGR03866 94 DNLVTVIDIETRKVLA----EIPVGVEPEGMAVSPDGKIVVNTSETTNMAHFIDTKTYEIVDNVLVDQRPRFAEFTADGK 169 (300)
T ss_pred CCeEEEEECCCCeEEe----EeeCCCCcceEEECCCCCEEEEEecCCCeEEEEeCCCCeEEEEEEcCCCccEEEECCCCC
Confidence 8999999998865432 2221 112223333333222222222222334455444333222222222 88999998
Q ss_pred ceEEEeecCcCeEEEEecCCCceeeeecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEeecCCcEEEEEccCC
Q 021291 162 KYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNP 241 (314)
Q Consensus 162 ~~~~~~g~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~ 241 (314)
.+++ ++..++.|++||+++++.+..+..... ..+.. ......+. |+|+ ++..+++...++.|.+||.++
T Consensus 170 ~l~~-~~~~~~~v~i~d~~~~~~~~~~~~~~~---~~~~~--~~~~~~i~-~s~d---g~~~~~~~~~~~~i~v~d~~~- 238 (300)
T TIGR03866 170 ELWV-SSEIGGTVSVIDVATRKVIKKITFEIP---GVHPE--AVQPVGIK-LTKD---GKTAFVALGPANRVAVVDAKT- 238 (300)
T ss_pred EEEE-EcCCCCEEEEEEcCcceeeeeeeeccc---ccccc--cCCccceE-ECCC---CCEEEEEcCCCCeEEEEECCC-
Confidence 6654 555689999999999887766542100 00101 11233455 9988 553445555677899999987
Q ss_pred CCceEeeecCCcceEEEEEeCCCCeEEEe-cCCCcEEEEecCCCeeeEee
Q 021291 242 GIPLTAMKVHLEPVLCLSIDESCNGGISG-GADQKIVLYNLDHSTYVLFG 290 (314)
Q Consensus 242 ~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-s~dg~i~iw~~~~~~~~~~~ 290 (314)
++.+..+. +...+.+++|+|++++|+++ +.+|.|++||+++++.+..+
T Consensus 239 ~~~~~~~~-~~~~~~~~~~~~~g~~l~~~~~~~~~i~v~d~~~~~~~~~~ 287 (300)
T TIGR03866 239 YEVLDYLL-VGQRVWQLAFTPDEKYLLTTNGVSNDVSVIDVAALKVIKSI 287 (300)
T ss_pred CcEEEEEE-eCCCcceEEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEE
Confidence 66655543 45679999999999998876 56899999999999877654
No 99
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.93 E-value=4.1e-23 Score=154.95 Aligned_cols=260 Identities=16% Similarity=0.189 Sum_probs=180.9
Q ss_pred CCCceeEEEEccCCCEEEEecCCCeEEEEeCCCCeEEEEEeccCCcccEEEEEEcccCCCCeEEEeecCCeEEEEeCCCC
Q 021291 17 HRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENG 96 (314)
Q Consensus 17 h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~ 96 (314)
..+.|..+.|+|.++.|+.++.||.+++||+........++ |. .++.+++|.+ + ..+++|+.||.|+.+|++++
T Consensus 12 P~d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~l~~~~~-~~--~plL~c~F~d--~-~~~~~G~~dg~vr~~Dln~~ 85 (323)
T KOG1036|consen 12 PEDGISSVKFSPSSSDLLVSSWDGSLRLYDVPANSLKLKFK-HG--APLLDCAFAD--E-STIVTGGLDGQVRRYDLNTG 85 (323)
T ss_pred ChhceeeEEEcCcCCcEEEEeccCcEEEEeccchhhhhhee-cC--CceeeeeccC--C-ceEEEeccCceEEEEEecCC
Confidence 46789999999988888889999999999998876655554 55 5599999998 5 88999999999999999988
Q ss_pred CCCCCCeeeeecc-eeeEEEeeeeeccccccccCCCCcceeeccCCceeeecCCCCCC-ceeccCCCceEEEeecCcCeE
Q 021291 97 GLSSNPSLTIKTN-SYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSK-DDVPAEGPKYMAVAGEQLSEV 174 (314)
Q Consensus 97 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~g~~d~~i 174 (314)
... .+..+ ....|..-...........-+....+|+.+...... .+..... .+.+-.++.+++ |..|..+
T Consensus 86 ~~~-----~igth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~~~~-~~d~~kkVy~~~v~g~~LvV--g~~~r~v 157 (323)
T KOG1036|consen 86 NED-----QIGTHDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNKVVVG-TFDQGKKVYCMDVSGNRLVV--GTSDRKV 157 (323)
T ss_pred cce-----eeccCCCceEEEEeeccCCeEEEcccCccEEEEecccccccc-ccccCceEEEEeccCCEEEE--eecCceE
Confidence 632 22222 222222111222233334444566677766422111 1111112 566667776664 5558999
Q ss_pred EEEecCCCceeeeecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEeecCCcEEEEEccCC---CCceEeeecC
Q 021291 175 EIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNP---GIPLTAMKVH 251 (314)
Q Consensus 175 ~vwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~---~~~~~~~~~h 251 (314)
.+||+++.....+.. ....+-.+.+++ +-|+ +. -+++++-||.|.+=.++.. ......++.|
T Consensus 158 ~iyDLRn~~~~~q~r----------eS~lkyqtR~v~-~~pn---~e-Gy~~sSieGRVavE~~d~s~~~~skkyaFkCH 222 (323)
T KOG1036|consen 158 LIYDLRNLDEPFQRR----------ESSLKYQTRCVA-LVPN---GE-GYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCH 222 (323)
T ss_pred EEEEcccccchhhhc----------cccceeEEEEEE-EecC---CC-ceEEEeecceEEEEccCCchHHhhhceeEEee
Confidence 999999877554322 112344677777 7775 33 5888999999988666641 1344556677
Q ss_pred Cc---------ceEEEEEeCCCCeEEEecCCCcEEEEecCCCeeeEe-------eeeeeecCCCceecee
Q 021291 252 LE---------PVLCLSIDESCNGGISGGADQKIVLYNLDHSTYVLF-------GIGFVCDQEGNKFGTT 305 (314)
Q Consensus 252 ~~---------~v~~~~~~~~~~~l~s~s~dg~i~iw~~~~~~~~~~-------~~~~~~~~~~~~~~~~ 305 (314)
.. +|++|+|+|-...|+||+.||.|.+||+.+.+.+.. +..++++.+|..++..
T Consensus 223 r~~~~~~~~~yPVNai~Fhp~~~tfaTgGsDG~V~~Wd~~~rKrl~q~~~~~~SI~slsfs~dG~~LAia 292 (323)
T KOG1036|consen 223 RLSEKDTEIIYPVNAIAFHPIHGTFATGGSDGIVNIWDLFNRKRLKQLAKYETSISSLSFSMDGSLLAIA 292 (323)
T ss_pred ecccCCceEEEEeceeEeccccceEEecCCCceEEEccCcchhhhhhccCCCCceEEEEeccCCCeEEEE
Confidence 43 899999999989999999999999999999988765 3446788888887764
No 100
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.93 E-value=2.7e-24 Score=171.63 Aligned_cols=234 Identities=14% Similarity=0.187 Sum_probs=168.0
Q ss_pred CCceeEEEEccCCCEEEEecCCCeEEEEeCCCCeEEE------------EEeccCCcccEEEEEEcccCCCCeEEEeecC
Q 021291 18 RASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVS------------SSWVHSAAHGIVSVATGPSIGLNKVISQGRD 85 (314)
Q Consensus 18 ~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~------------~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d 85 (314)
...|++++|++.|..|++.+.....+|+|-...+... ..++|. ..++|.+|+|. +...|++++.|
T Consensus 214 ~h~i~sl~ys~Tg~~iLvvsg~aqakl~DRdG~~~~e~~KGDQYI~Dm~nTKGHi--a~lt~g~whP~-~k~~FlT~s~D 290 (641)
T KOG0772|consen 214 THQINSLQYSVTGDQILVVSGSAQAKLLDRDGFEIVEFSKGDQYIRDMYNTKGHI--AELTCGCWHPD-NKEEFLTCSYD 290 (641)
T ss_pred ccccceeeecCCCCeEEEEecCcceeEEccCCceeeeeeccchhhhhhhccCCce--eeeeccccccC-cccceEEecCC
Confidence 3468999999999988888888899999965433322 224676 55999999996 34789999999
Q ss_pred CeEEEEeCCCCCCCCCCeeeeecceeeEEEeeeeeccccccccCCCCcceeeccCCceeeecCCCCCCceeccCCCceEE
Q 021291 86 GTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMA 165 (314)
Q Consensus 86 g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (314)
|+++|||++..+...+ ++.-.... .....+. ..+|+++|+. ++
T Consensus 291 gtlRiWdv~~~k~q~q-Vik~k~~~--g~Rv~~t---------------------------------sC~~nrdg~~-iA 333 (641)
T KOG0772|consen 291 GTLRIWDVNNTKSQLQ-VIKTKPAG--GKRVPVT---------------------------------SCAWNRDGKL-IA 333 (641)
T ss_pred CcEEEEecCCchhhee-EEeeccCC--CcccCce---------------------------------eeecCCCcch-hh
Confidence 9999999987653221 11111110 0000000 0569999985 33
Q ss_pred EeecCcCeEEEEecCCCce--eeeecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEeecCCcEEEEEccCCCC
Q 021291 166 VAGEQLSEVEIWDLNTAER--CTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGI 243 (314)
Q Consensus 166 ~~g~~d~~i~vwd~~~~~~--~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~ 243 (314)
+|..||.|.+|+...... ...+.. +|.. ...++++. |+++ |+ +|++-+.|+++++||+++..+
T Consensus 334 -agc~DGSIQ~W~~~~~~v~p~~~vk~-------AH~~--g~~Itsi~-FS~d---g~-~LlSRg~D~tLKvWDLrq~kk 398 (641)
T KOG0772|consen 334 -AGCLDGSIQIWDKGSRTVRPVMKVKD-------AHLP--GQDITSIS-FSYD---GN-YLLSRGFDDTLKVWDLRQFKK 398 (641)
T ss_pred -hcccCCceeeeecCCcccccceEeee-------ccCC--CCceeEEE-eccc---cc-hhhhccCCCceeeeecccccc
Confidence 577799999999865432 222222 5643 23688887 9998 55 899999999999999999888
Q ss_pred ceEeeecCCc--ceEEEEEeCCCCeEEEecC------CCcEEEEecCCCeeeEeeeeeeecCCCceeceeecccc
Q 021291 244 PLTAMKVHLE--PVLCLSIDESCNGGISGGA------DQKIVLYNLDHSTYVLFGIGFVCDQEGNKFGTTWHIRH 310 (314)
Q Consensus 244 ~~~~~~~h~~--~v~~~~~~~~~~~l~s~s~------dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~ 310 (314)
++....+-.. +-+.++|+|+.++|+||.. .|.+.+||..+-..++.+-- +........||++.
T Consensus 399 pL~~~tgL~t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~d~v~ki~i----~~aSvv~~~WhpkL 469 (641)
T KOG0772|consen 399 PLNVRTGLPTPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMTLDTVYKIDI----STASVVRCLWHPKL 469 (641)
T ss_pred chhhhcCCCccCCCCccccCCCceEEEecccccCCCCCceEEEEeccceeeEEEecC----CCceEEEEeecchh
Confidence 8887765443 5678999999999999864 57899999999888876421 35666777888853
No 101
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.93 E-value=1.2e-23 Score=170.72 Aligned_cols=284 Identities=19% Similarity=0.213 Sum_probs=191.9
Q ss_pred CCCCCCceEEecCCCCceeEEEEccCCCEEEEecCCCeEEEEeCCCCeEEEEEeccCCcccEEEEEEcccCCCCeEEEee
Q 021291 4 RPPPPDPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQG 83 (314)
Q Consensus 4 ~~~~~~~~~~l~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~ 83 (314)
+|.|..+...++||++.|.|+...|.|.+|++|+.||+|+||.+.+|+|++++... +.|.|++|+|..+...|+.+-
T Consensus 386 rPFPt~~~lvyrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~~~d---~~I~~vaw~P~~~~~vLAvA~ 462 (733)
T KOG0650|consen 386 RPFPTRCALVYRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRTVQFD---SEIRSVAWNPLSDLCVLAVAV 462 (733)
T ss_pred CCCcceeeeeEeccCCeEEEEEecCCcceeeecCCCCcEEEEEeecceEEEEEeec---ceeEEEEecCCCCceeEEEEe
Confidence 68888899999999999999999999999999999999999999999999998765 459999999943323444444
Q ss_pred cCCeEEEEeCCCCCCCC-----CCeeeee---c---------------ceeeEE------------Eeeeeecccccccc
Q 021291 84 RDGTVKCWDIENGGLSS-----NPSLTIK---T---------------NSYHFC------------KLSLVKEPYANAKQ 128 (314)
Q Consensus 84 ~dg~v~iwd~~~~~~~~-----~~~~~~~---~---------------~~~~~~------------~~~~~~~~~~~~~~ 128 (314)
+..+.|-+..-+..+. .+..... . .....| .+.-.+........
T Consensus 463 -~~~~~ivnp~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~ 541 (733)
T KOG0650|consen 463 -GECVLIVNPIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMP 541 (733)
T ss_pred -cCceEEeCccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEecc
Confidence 4446666654331110 0000000 0 000001 11111111122222
Q ss_pred CCCCcc--eeeccCCcee--eecCCCCCC-ceeccCCCceEEEeecCcCeEEEEecCCCceeeeecccccCCCCCcCCCC
Q 021291 129 ANEPKD--CYEREVGETV--DTDSLCDSK-DDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKG 203 (314)
Q Consensus 129 ~~~~~~--~~~~~~~~~~--~~~~~~~~~-~~~~~~~~~~~~~~g~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~h~~~~ 203 (314)
.++... +..+...... .....++.. +.|+|...++++++ ...|++||+...+.+..+.. .
T Consensus 542 ~~~~~~VliHQLSK~~sQ~PF~kskG~vq~v~FHPs~p~lfVaT---q~~vRiYdL~kqelvKkL~t------------g 606 (733)
T KOG0650|consen 542 DSGNKSVLIHQLSKRKSQSPFRKSKGLVQRVKFHPSKPYLFVAT---QRSVRIYDLSKQELVKKLLT------------G 606 (733)
T ss_pred CCCcceEEEEecccccccCchhhcCCceeEEEecCCCceEEEEe---ccceEEEehhHHHHHHHHhc------------C
Confidence 222111 1222222111 111222222 88999998888654 37899999998777766652 1
Q ss_pred CceeeeEEEecCCCCCCceEEEEeecCCcEEEEEccCCCCceEeeecCCcceEEEEEeCCCCeEEEecCCCcEEEEecC-
Q 021291 204 RGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLD- 282 (314)
Q Consensus 204 ~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~iw~~~- 282 (314)
.-.+..++ .+|. |. -|+.|+.|+.+..+|+.-..++.+.+.-|...|++|+|++...++++|+.||.+.|+--.
T Consensus 607 ~kwiS~ms-ihp~---GD-nli~gs~d~k~~WfDldlsskPyk~lr~H~~avr~Va~H~ryPLfas~sdDgtv~Vfhg~V 681 (733)
T KOG0650|consen 607 SKWISSMS-IHPN---GD-NLILGSYDKKMCWFDLDLSSKPYKTLRLHEKAVRSVAFHKRYPLFASGSDDGTVIVFHGMV 681 (733)
T ss_pred Ceeeeeee-ecCC---CC-eEEEecCCCeeEEEEcccCcchhHHhhhhhhhhhhhhhccccceeeeecCCCcEEEEeeee
Confidence 22456665 8886 44 799999999999999997678999999999999999999999999999999999998422
Q ss_pred -----CCee---eEeeeeeeecCCCceeceeeccccc
Q 021291 283 -----HSTY---VLFGIGFVCDQEGNKFGTTWHIRHL 311 (314)
Q Consensus 283 -----~~~~---~~~~~~~~~~~~~~~~~~~w~~~~~ 311 (314)
..-. +..+.++....+..++.+.||+++.
T Consensus 682 Y~Dl~qnpliVPlK~L~gH~~~~~~gVLd~~wHP~qp 718 (733)
T KOG0650|consen 682 YNDLLQNPLIVPLKRLRGHEKTNDLGVLDTIWHPRQP 718 (733)
T ss_pred ehhhhcCCceEeeeeccCceeecccceEeecccCCCc
Confidence 2222 2346677777888899999999873
No 102
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.93 E-value=8.6e-25 Score=169.97 Aligned_cols=211 Identities=17% Similarity=0.249 Sum_probs=149.4
Q ss_pred CceEEecCCCCceeEEEEccCCCEEEEecCCCeEEEEeCCCCeEEEEEeccCCcccEEEEEEcccCCCCeEEEeecCCeE
Q 021291 9 DPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTV 88 (314)
Q Consensus 9 ~~~~~l~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~v 88 (314)
+..+++.||..+|.-+.||||.++|++|+.|-.+.+||+.+|.+...+... ....+.+++|.| ||..+++|+.|+++
T Consensus 260 kl~~tlvgh~~~V~yi~wSPDdryLlaCg~~e~~~lwDv~tgd~~~~y~~~-~~~S~~sc~W~p--Dg~~~V~Gs~dr~i 336 (519)
T KOG0293|consen 260 KLKKTLVGHSQPVSYIMWSPDDRYLLACGFDEVLSLWDVDTGDLRHLYPSG-LGFSVSSCAWCP--DGFRFVTGSPDRTI 336 (519)
T ss_pred eeeeeeecccCceEEEEECCCCCeEEecCchHheeeccCCcchhhhhcccC-cCCCcceeEEcc--CCceeEecCCCCcE
Confidence 568899999999999999999999999999999999999999988777533 224599999999 99999999999999
Q ss_pred EEEeCCCCCCCC-----CC-eeeeec--cee-----------------------------eEEEeeeeeccc-cccccCC
Q 021291 89 KCWDIENGGLSS-----NP-SLTIKT--NSY-----------------------------HFCKLSLVKEPY-ANAKQAN 130 (314)
Q Consensus 89 ~iwd~~~~~~~~-----~~-~~~~~~--~~~-----------------------------~~~~~~~~~~~~-~~~~~~~ 130 (314)
..||+....... .| +..+.. ... ....+++..... .......
T Consensus 337 ~~wdlDgn~~~~W~gvr~~~v~dlait~Dgk~vl~v~~d~~i~l~~~e~~~dr~lise~~~its~~iS~d~k~~LvnL~~ 416 (519)
T KOG0293|consen 337 IMWDLDGNILGNWEGVRDPKVHDLAITYDGKYVLLVTVDKKIRLYNREARVDRGLISEEQPITSFSISKDGKLALVNLQD 416 (519)
T ss_pred EEecCCcchhhcccccccceeEEEEEcCCCcEEEEEecccceeeechhhhhhhccccccCceeEEEEcCCCcEEEEEccc
Confidence 999987653211 00 111110 000 000111111111 1111222
Q ss_pred CCcceeeccCCceeeecCCCCCC------ceeccCCCceEEEeecCcCeEEEEecCCCceeeeecccccCCCCCcCCCCC
Q 021291 131 EPKDCYEREVGETVDTDSLCDSK------DDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGR 204 (314)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~g~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~h~~~~~ 204 (314)
.....|++. ...+...+.+|.. -+|.-..+. ++++|++|+.|+||+..+++++..+. ||.
T Consensus 417 qei~LWDl~-e~~lv~kY~Ghkq~~fiIrSCFgg~~~~-fiaSGSED~kvyIWhr~sgkll~~Ls--------GHs---- 482 (519)
T KOG0293|consen 417 QEIHLWDLE-ENKLVRKYFGHKQGHFIIRSCFGGGNDK-FIASGSEDSKVYIWHRISGKLLAVLS--------GHS---- 482 (519)
T ss_pred CeeEEeecc-hhhHHHHhhcccccceEEEeccCCCCcc-eEEecCCCceEEEEEccCCceeEeec--------CCc----
Confidence 344556666 3344455666655 445444434 44589999999999999999999999 884
Q ss_pred ceeeeEEEecCCCCCCceEEEEeecCCcEEEEEccC
Q 021291 205 GMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRN 240 (314)
Q Consensus 205 ~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~ 240 (314)
..+.+++ |+|..+. .+|+++.||+|+||-...
T Consensus 483 ~~vNcVs-wNP~~p~---m~ASasDDgtIRIWg~~~ 514 (519)
T KOG0293|consen 483 KTVNCVS-WNPADPE---MFASASDDGTIRIWGPSD 514 (519)
T ss_pred ceeeEEe-cCCCCHH---HhhccCCCCeEEEecCCc
Confidence 4788887 9998552 899999999999998764
No 103
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.93 E-value=8.4e-24 Score=162.65 Aligned_cols=210 Identities=15% Similarity=0.276 Sum_probs=157.9
Q ss_pred EecCCCCceeEEEEccCC--CEEEEecCCCeEEEEeCCC----------------CeEEEEEeccCCcccEEEEEEcccC
Q 021291 13 VLRGHRASVTDVCFHQTK--PILFAGTTGGELRIWDTVQ----------------HRTVSSSWVHSAAHGIVSVATGPSI 74 (314)
Q Consensus 13 ~l~~h~~~v~~~~~~~~~--~~l~s~~~dg~v~iwd~~~----------------~~~~~~~~~~~~~~~v~~~~~~~~~ 74 (314)
..-+|.+.|+.+.-++-+ .+.++=+..|.|.||++.. .+.+.++.+|... =+.|+|||.
T Consensus 146 ~~i~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~E--Gy~LdWSp~- 222 (440)
T KOG0302|consen 146 KSIPHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGE--GYGLDWSPI- 222 (440)
T ss_pred cccccccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCcc--ceeeecccc-
Confidence 344688888888888744 4667778899999999753 2456778888855 789999995
Q ss_pred CCCeEEEeecCCeEEEEeCCCCCCCCCCeeeeecceeeEEEeeeeeccccccccCCCCcceeeccCCceeeecCCCCCC-
Q 021291 75 GLNKVISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSK- 153 (314)
Q Consensus 75 ~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 153 (314)
....|++|..-+.|++|...++.... .. ..+.+|..
T Consensus 223 ~~g~LlsGDc~~~I~lw~~~~g~W~v------d~-------------------------------------~Pf~gH~~S 259 (440)
T KOG0302|consen 223 KTGRLLSGDCVKGIHLWEPSTGSWKV------DQ-------------------------------------RPFTGHTKS 259 (440)
T ss_pred cccccccCccccceEeeeeccCceee------cC-------------------------------------ccccccccc
Confidence 33668899888999999998875321 11 01222333
Q ss_pred ---ceeccCCCceEEEeecCcCeEEEEecCCCceeeeecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEeecC
Q 021291 154 ---DDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYED 230 (314)
Q Consensus 154 ---~~~~~~~~~~~~~~g~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~d 230 (314)
++|||..+.+++ +++.||+|+|||+|.+.....+... +| .+-+..+. |+...+ +|++|+.|
T Consensus 260 VEDLqWSptE~~vfa-ScS~DgsIrIWDiRs~~~~~~~~~k------Ah----~sDVNVIS-Wnr~~~----lLasG~Dd 323 (440)
T KOG0302|consen 260 VEDLQWSPTEDGVFA-SCSCDGSIRIWDIRSGPKKAAVSTK------AH----NSDVNVIS-WNRREP----LLASGGDD 323 (440)
T ss_pred hhhhccCCccCceEE-eeecCceEEEEEecCCCccceeEee------cc----CCceeeEE-ccCCcc----eeeecCCC
Confidence 789999988877 6777999999999988422221111 56 33566665 987744 89999999
Q ss_pred CcEEEEEccC--CCCceEeeecCCcceEEEEEeCCC-CeEEEecCCCcEEEEecCCC
Q 021291 231 GSILVWDIRN--PGIPLTAMKVHLEPVLCLSIDESC-NGGISGGADQKIVLYNLDHS 284 (314)
Q Consensus 231 g~i~vwd~~~--~~~~~~~~~~h~~~v~~~~~~~~~-~~l~s~s~dg~i~iw~~~~~ 284 (314)
|+++|||+|+ .++++..++-|..+|++|.|+|.. ..|+++|.|..|.+||+.-.
T Consensus 324 Gt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p~e~s~iaasg~D~QitiWDlsvE 380 (440)
T KOG0302|consen 324 GTLSIWDLRQFKSGQPVATFKYHKAPITSIEWHPHEDSVIAASGEDNQITIWDLSVE 380 (440)
T ss_pred ceEEEEEhhhccCCCcceeEEeccCCeeEEEeccccCceEEeccCCCcEEEEEeecc
Confidence 9999999985 357899999999999999998753 45788889999999998644
No 104
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.93 E-value=1.3e-24 Score=166.32 Aligned_cols=247 Identities=15% Similarity=0.236 Sum_probs=190.5
Q ss_pred CceEEecCCCCceeEEEEccCCCEEEEecCCCeEEEEeCCCCeEEEEEeccCCcccEEEEEEcccCCCCeEEEeecCCeE
Q 021291 9 DPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTV 88 (314)
Q Consensus 9 ~~~~~l~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~v 88 (314)
+++++|++|.+.|..|++.. ..+++++.|.+|+.|.++- ..+.++.+. ..+..+.-+. .+..++|++.+ |
T Consensus 100 ~~~~~f~AH~G~V~Gi~v~~--~~~~tvgdDKtvK~wk~~~-~p~~tilg~---s~~~gIdh~~--~~~~FaTcGe~--i 169 (433)
T KOG0268|consen 100 ECIRTFKAHEGLVRGICVTQ--TSFFTVGDDKTVKQWKIDG-PPLHTILGK---SVYLGIDHHR--KNSVFATCGEQ--I 169 (433)
T ss_pred hhhheeecccCceeeEEecc--cceEEecCCcceeeeeccC-Ccceeeecc---cccccccccc--ccccccccCce--e
Confidence 56789999999999999986 5789999999999999774 566666554 3367777766 66889999864 9
Q ss_pred EEEeCCCCCCCCCCeeeeecceeeEEEeeeeeccccccccCCCCcceeeccCCceeeecCCCCCC--ceeccCCCceEEE
Q 021291 89 KCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSK--DDVPAEGPKYMAV 166 (314)
Q Consensus 89 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~ 166 (314)
.|||.+....+. .++........+.+++................+++++....+......-.. ++|+|.+- .+ +
T Consensus 170 ~IWD~~R~~Pv~--smswG~Dti~svkfNpvETsILas~~sDrsIvLyD~R~~~Pl~KVi~~mRTN~IswnPeaf-nF-~ 245 (433)
T KOG0268|consen 170 DIWDEQRDNPVS--SMSWGADSISSVKFNPVETSILASCASDRSIVLYDLRQASPLKKVILTMRTNTICWNPEAF-NF-V 245 (433)
T ss_pred eecccccCCccc--eeecCCCceeEEecCCCcchheeeeccCCceEEEecccCCccceeeeeccccceecCcccc-ce-e
Confidence 999997665544 456666677888888887777777777888888999888766665544444 99999553 33 3
Q ss_pred eecCcCeEEEEecCCCce-eeeecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEeecCCcEEEEEccCCCCce
Q 021291 167 AGEQLSEVEIWDLNTAER-CTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPL 245 (314)
Q Consensus 167 ~g~~d~~i~vwd~~~~~~-~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~ 245 (314)
++++|..++.||++..+. +..+. +| .+.++.+. |+|. |+ -+++|+.|.+|+||..+. +...
T Consensus 246 ~a~ED~nlY~~DmR~l~~p~~v~~--------dh----vsAV~dVd-fspt---G~-EfvsgsyDksIRIf~~~~-~~SR 307 (433)
T KOG0268|consen 246 AANEDHNLYTYDMRNLSRPLNVHK--------DH----VSAVMDVD-FSPT---GQ-EFVSGSYDKSIRIFPVNH-GHSR 307 (433)
T ss_pred eccccccceehhhhhhcccchhhc--------cc----ceeEEEec-cCCC---cc-hhccccccceEEEeecCC-Ccch
Confidence 788899999999997654 33344 55 55899998 9998 55 799999999999999986 3322
Q ss_pred Eeee-cCCcceEEEEEeCCCCeEEEecCCCcEEEEecCCCeee
Q 021291 246 TAMK-VHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTYV 287 (314)
Q Consensus 246 ~~~~-~h~~~v~~~~~~~~~~~l~s~s~dg~i~iw~~~~~~~~ 287 (314)
..+. .--..|.++.|+-|.+++++||.|+.|++|.-...+++
T Consensus 308 diYhtkRMq~V~~Vk~S~Dskyi~SGSdd~nvRlWka~Asekl 350 (433)
T KOG0268|consen 308 DIYHTKRMQHVFCVKYSMDSKYIISGSDDGNVRLWKAKASEKL 350 (433)
T ss_pred hhhhHhhhheeeEEEEeccccEEEecCCCcceeeeecchhhhc
Confidence 2221 22357999999999999999999999999987655543
No 105
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.92 E-value=2.9e-23 Score=156.33 Aligned_cols=260 Identities=15% Similarity=0.120 Sum_probs=173.8
Q ss_pred CCCCceEEecCCCCceeEEEEccCCCEEEEecCCCeEEEEeCCCCeEEEEEeccCCcccEEEEEEcccCCCCeEEEeecC
Q 021291 6 PPPDPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRD 85 (314)
Q Consensus 6 ~~~~~~~~l~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d 85 (314)
.|.+.-.+|.. .. -.|+.|++.|.+||+|..||.|.|||+.+...-+.+.+|..+ |.+++|++ +|++|+++|.|
T Consensus 13 ~PEel~~tld~-~~-a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~iar~lsaH~~p--i~sl~WS~--dgr~LltsS~D 86 (405)
T KOG1273|consen 13 YPEELTHTLDN-PL-AECCQFSRWGDYLAVGCANGRVVIYDFDTFRIARMLSAHVRP--ITSLCWSR--DGRKLLTSSRD 86 (405)
T ss_pred ChHhhceeccC-Cc-cceEEeccCcceeeeeccCCcEEEEEccccchhhhhhccccc--eeEEEecC--CCCEeeeecCC
Confidence 34455666653 22 789999999999999999999999999998888888999955 99999999 99999999999
Q ss_pred CeEEEEeCCCCCCCCCCeeeeecceeeEEEeeeeeccccccccCCCCcceeeccCCceeeec--CCCCCC-----ceecc
Q 021291 86 GTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTD--SLCDSK-----DDVPA 158 (314)
Q Consensus 86 g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~-----~~~~~ 158 (314)
..|.+||+..+.+..+ +.+. .+...+.+.+................+..+......... -.+... ..|.+
T Consensus 87 ~si~lwDl~~gs~l~r--irf~-spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~~Lp~d~d~dln~sas~~~fdr 163 (405)
T KOG1273|consen 87 WSIKLWDLLKGSPLKR--IRFD-SPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHSVLPKDDDGDLNSSASHGVFDR 163 (405)
T ss_pred ceeEEEeccCCCceeE--EEcc-CccceeeeccccCCeEEEEEecCCcEEEEecCCceeeccCCCccccccccccccccC
Confidence 9999999999986552 1221 122333333333222222222222223333221100000 011111 34778
Q ss_pred CCCceEEEeecCcCeEEEEecCCCceeeeecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEeecCCcEEEEEc
Q 021291 159 EGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDI 238 (314)
Q Consensus 159 ~~~~~~~~~g~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~ 238 (314)
.|++++ +|...|.+.+||..+.+++..++.. + ...+-.+. ++.. |+ .|+.-+.|..|+.|++
T Consensus 164 ~g~yIi--tGtsKGkllv~~a~t~e~vas~rit--------s---~~~IK~I~-~s~~---g~-~liiNtsDRvIR~ye~ 225 (405)
T KOG1273|consen 164 RGKYII--TGTSKGKLLVYDAETLECVASFRIT--------S---VQAIKQII-VSRK---GR-FLIINTSDRVIRTYEI 225 (405)
T ss_pred CCCEEE--EecCcceEEEEecchheeeeeeeec--------h---heeeeEEE-Eecc---Cc-EEEEecCCceEEEEeh
Confidence 888776 5777899999999999998888731 1 12444554 6665 66 8999999999999998
Q ss_pred cCCC------C--ceEeeec--CCcceEEEEEeCCCCeEEEecC-CCcEEEEecCCCeeeEeeee
Q 021291 239 RNPG------I--PLTAMKV--HLEPVLCLSIDESCNGGISGGA-DQKIVLYNLDHSTYVLFGIG 292 (314)
Q Consensus 239 ~~~~------~--~~~~~~~--h~~~v~~~~~~~~~~~l~s~s~-dg~i~iw~~~~~~~~~~~~~ 292 (314)
+... . +.+.++. ....=.+++|+.+|.|++.++. ...++||.-..|..+....|
T Consensus 226 ~di~~~~r~~e~e~~~K~qDvVNk~~Wk~ccfs~dgeYv~a~s~~aHaLYIWE~~~GsLVKILhG 290 (405)
T KOG1273|consen 226 SDIDDEGRDGEVEPEHKLQDVVNKLQWKKCCFSGDGEYVCAGSARAHALYIWEKSIGSLVKILHG 290 (405)
T ss_pred hhhcccCccCCcChhHHHHHHHhhhhhhheeecCCccEEEeccccceeEEEEecCCcceeeeecC
Confidence 7311 1 1122211 1223356788999999977764 45799999999988765433
No 106
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.92 E-value=2.8e-23 Score=179.23 Aligned_cols=234 Identities=17% Similarity=0.202 Sum_probs=169.9
Q ss_pred CCCCceeEEEEccCCCEEEEec--CCCeEEEEeCCC------------CeEEEEEeccCCcccEEEEEEcccCCCCeEEE
Q 021291 16 GHRASVTDVCFHQTKPILFAGT--TGGELRIWDTVQ------------HRTVSSSWVHSAAHGIVSVATGPSIGLNKVIS 81 (314)
Q Consensus 16 ~h~~~v~~~~~~~~~~~l~s~~--~dg~v~iwd~~~------------~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s 81 (314)
.+...|.+++.+|||..+|||+ .||.++||+.+. .+.+..+..|.+ .|.|+.|+| ||.+||+
T Consensus 11 H~~~~IfSIdv~pdg~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~--sv~CVR~S~--dG~~lAs 86 (942)
T KOG0973|consen 11 HNEKSIFSIDVHPDGVKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDG--SVNCVRFSP--DGSYLAS 86 (942)
T ss_pred cCCeeEEEEEecCCceeEecCCccccccceeeccccccchhhhhhcccchhheeeccccC--ceeEEEECC--CCCeEee
Confidence 3456799999999999999999 899999998652 234556667774 499999999 9999999
Q ss_pred eecCCeEEEEeCCCCCCCCCCeeeeecceeeEEEeeeeeccccccccCCCCcceeeccCCceeeecCCCCCC----ceec
Q 021291 82 QGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSK----DDVP 157 (314)
Q Consensus 82 ~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~ 157 (314)
|++|+.|.||+..... ....+....... +.+ .......+.+|.. ++|+
T Consensus 87 GSDD~~v~iW~~~~~~--~~~~fgs~g~~~-------------------------~vE-~wk~~~~l~~H~~DV~Dv~Ws 138 (942)
T KOG0973|consen 87 GSDDRLVMIWERAEIG--SGTVFGSTGGAK-------------------------NVE-SWKVVSILRGHDSDVLDVNWS 138 (942)
T ss_pred ccCcceEEEeeecccC--Cccccccccccc-------------------------ccc-eeeEEEEEecCCCccceeccC
Confidence 9999999999987511 000111100000 001 1122334455655 8999
Q ss_pred cCCCceEEEeecCcCeEEEEecCCCceeeeecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEeecCCcEEEEE
Q 021291 158 AEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWD 237 (314)
Q Consensus 158 ~~~~~~~~~~g~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd 237 (314)
|++.. + ++++.|++|.+||.++.+.+..+. +|...+. .+. |.|- |+ +|++-+.|++|+||+
T Consensus 139 p~~~~-l-vS~s~DnsViiwn~~tF~~~~vl~--------~H~s~VK----Gvs-~DP~---Gk-y~ASqsdDrtikvwr 199 (942)
T KOG0973|consen 139 PDDSL-L-VSVSLDNSVIIWNAKTFELLKVLR--------GHQSLVK----GVS-WDPI---GK-YFASQSDDRTLKVWR 199 (942)
T ss_pred CCccE-E-EEecccceEEEEccccceeeeeee--------ccccccc----ceE-ECCc---cC-eeeeecCCceEEEEE
Confidence 98863 3 378889999999999999999998 8865444 454 9998 66 999999999999999
Q ss_pred ccCCCC---------------------------------------------------ceEeeecCCcceEEEEEeC----
Q 021291 238 IRNPGI---------------------------------------------------PLTAMKVHLEPVLCLSIDE---- 262 (314)
Q Consensus 238 ~~~~~~---------------------------------------------------~~~~~~~h~~~v~~~~~~~---- 262 (314)
+.+.+- .-..+-||..++.+++|+|
T Consensus 200 t~dw~i~k~It~pf~~~~~~T~f~RlSWSPDG~~las~nA~n~~~~~~~IieR~tWk~~~~LvGH~~p~evvrFnP~lfe 279 (942)
T KOG0973|consen 200 TSDWGIEKSITKPFEESPLTTFFLRLSWSPDGHHLASPNAVNGGKSTIAIIERGTWKVDKDLVGHSAPVEVVRFNPKLFE 279 (942)
T ss_pred cccceeeEeeccchhhCCCcceeeecccCCCcCeecchhhccCCcceeEEEecCCceeeeeeecCCCceEEEEeChHHhc
Confidence 643100 1123558999999999965
Q ss_pred --CC-----------CeEEEecCCCcEEEEecCCCeeeEe--------eeeeeecCCCc
Q 021291 263 --SC-----------NGGISGGADQKIVLYNLDHSTYVLF--------GIGFVCDQEGN 300 (314)
Q Consensus 263 --~~-----------~~l~s~s~dg~i~iw~~~~~~~~~~--------~~~~~~~~~~~ 300 (314)
.. ..+|+||.|++|.||.....+.++. +..++.+|+|.
T Consensus 280 ~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~~RPl~vi~~lf~~SI~DmsWspdG~ 338 (942)
T KOG0973|consen 280 RNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTALPRPLFVIHNLFNKSIVDMSWSPDGF 338 (942)
T ss_pred cccccCCccCCCcceEEEEEecCCccEEEEecCCCCchhhhhhhhcCceeeeeEcCCCC
Confidence 11 1579999999999999998888775 34455556664
No 107
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.92 E-value=1.2e-23 Score=158.73 Aligned_cols=212 Identities=18% Similarity=0.354 Sum_probs=168.1
Q ss_pred CCCceEEecCCCCceeEEEEccCCCEEEEecCCCeEEEEe------CCC--------C----------------------
Q 021291 7 PPDPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWD------TVQ--------H---------------------- 50 (314)
Q Consensus 7 ~~~~~~~l~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd------~~~--------~---------------------- 50 (314)
.++++.++.||.+.|++++|++.+.++++++.|++-.||. +.. +
T Consensus 179 sg~CL~~Y~GH~GSVNsikfh~s~~L~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~ 258 (481)
T KOG0300|consen 179 SGACLATYTGHTGSVNSIKFHNSGLLLLTASGDETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDG 258 (481)
T ss_pred cccceeeecccccceeeEEeccccceEEEccCCcchHHHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCC
Confidence 4688999999999999999999999999999999999996 111 0
Q ss_pred ----eEEEEEeccCCcccEEEEEEcccCCCCeEEEeecCCeEEEEeCCCCCCCCCCeeeeecceeeEEEeeeeecccccc
Q 021291 51 ----RTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANA 126 (314)
Q Consensus 51 ----~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 126 (314)
.++..+.+|. ..|.+..|.. .++.++++++|.+-.+||+++++.+. .++.+......|
T Consensus 259 ~tiRvPl~~ltgH~--~vV~a~dWL~--gg~Q~vTaSWDRTAnlwDVEtge~v~--~LtGHd~ELtHc------------ 320 (481)
T KOG0300|consen 259 HTIRVPLMRLTGHR--AVVSACDWLA--GGQQMVTASWDRTANLWDVETGEVVN--ILTGHDSELTHC------------ 320 (481)
T ss_pred ceeeeeeeeeeccc--cceEehhhhc--CcceeeeeeccccceeeeeccCceec--cccCcchhcccc------------
Confidence 1245667787 4599999999 89999999999999999999998765 344444443333
Q ss_pred ccCCCCcceeeccCCceeeecCCCCCCceeccCCCceEEEeecCcCeEEEEecCCCc-eeeeecccccCCCCCcCCCCCc
Q 021291 127 KQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQLSEVEIWDLNTAE-RCTRLHQNSCGGSPNFSSKGRG 205 (314)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~vwd~~~~~-~~~~~~~~~~~~~~~h~~~~~~ 205 (314)
+-+|.. . ++++.+.|.+.++||.+..- .+..|. ||.+
T Consensus 321 ----------------------------stHptQ-r-LVvTsSrDtTFRLWDFReaI~sV~VFQ--------GHtd---- 358 (481)
T KOG0300|consen 321 ----------------------------STHPTQ-R-LVVTSSRDTTFRLWDFREAIQSVAVFQ--------GHTD---- 358 (481)
T ss_pred ----------------------------ccCCcc-e-EEEEeccCceeEeccchhhcceeeeec--------cccc----
Confidence 233443 3 44578889999999998432 345566 7854
Q ss_pred eeeeEEEecCCCCCCceEEEEeecCCcEEEEEccCCCCceEeeecCCcceEEEEEeCCCCeEEEecCCCcEEEEecCCCe
Q 021291 206 MCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHST 285 (314)
Q Consensus 206 ~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~iw~~~~~~ 285 (314)
.++++. |..+ . .+++|+.|.+|++||+++...++.++.. ..+++.++.+..+..|+.--.+..|++||++..+
T Consensus 359 tVTS~v-F~~d---d--~vVSgSDDrTvKvWdLrNMRsplATIRt-dS~~NRvavs~g~~iIAiPhDNRqvRlfDlnG~R 431 (481)
T KOG0300|consen 359 TVTSVV-FNTD---D--RVVSGSDDRTVKVWDLRNMRSPLATIRT-DSPANRVAVSKGHPIIAIPHDNRQVRLFDLNGNR 431 (481)
T ss_pred ceeEEE-EecC---C--ceeecCCCceEEEeeeccccCcceeeec-CCccceeEeecCCceEEeccCCceEEEEecCCCc
Confidence 666766 8876 2 6999999999999999998899999875 7899999999988888888888899999997554
No 108
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.92 E-value=3.5e-25 Score=183.16 Aligned_cols=226 Identities=18% Similarity=0.295 Sum_probs=183.9
Q ss_pred EEecCCCCceeEEEEccCCCEEEEecCCCeEEEEeCCCCeEEEEEeccCCcccEEEEEEcccCCCCeEEEeecCCeEEEE
Q 021291 12 AVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCW 91 (314)
Q Consensus 12 ~~l~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~v~iw 91 (314)
+.+-.|...|.|+..-..++.+++|+.|-.+-+|.+.....+..+.+|.. +|.++.|++ +..+|++|+.+|+|++|
T Consensus 22 ~~~~~hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp~~i~S~~~hes--pIeSl~f~~--~E~LlaagsasgtiK~w 97 (825)
T KOG0267|consen 22 REFVAHSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGKPNAITSLTGHES--PIESLTFDT--SERLLAAGSASGTIKVW 97 (825)
T ss_pred hhhhhhhhhhceeeeeccceeeccCCCceeeccccccCCchhheeeccCC--cceeeecCc--chhhhcccccCCceeee
Confidence 45557899999999866888999999999999999988888888999994 499999999 87899999999999999
Q ss_pred eCCCCCCCCCCeeeeecceeeEEEeeeeeccccccccCCCCcceeeccCCceeeecCCCCCCceeccCCCceEEEeecCc
Q 021291 92 DIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQL 171 (314)
Q Consensus 92 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d 171 (314)
|++..+.++ ++..+....+. +.|+|.+.+. ++|+.|
T Consensus 98 DleeAk~vr----tLtgh~~~~~s--------------------------------------v~f~P~~~~~--a~gStd 133 (825)
T KOG0267|consen 98 DLEEAKIVR----TLTGHLLNITS--------------------------------------VDFHPYGEFF--ASGSTD 133 (825)
T ss_pred ehhhhhhhh----hhhccccCcce--------------------------------------eeeccceEEe--cccccc
Confidence 999887654 22222222111 4588888765 489999
Q ss_pred CeEEEEecCCCceeeeecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEeecCCcEEEEEccCCCCceEeeecC
Q 021291 172 SEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVH 251 (314)
Q Consensus 172 ~~i~vwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~h 251 (314)
+.+++||.+...+...+. +| ...+..+. |+|+ |+ +++.|++|..++|||+.. ++.+.++..|
T Consensus 134 td~~iwD~Rk~Gc~~~~~--------s~----~~vv~~l~-lsP~---Gr-~v~~g~ed~tvki~d~~a-gk~~~ef~~~ 195 (825)
T KOG0267|consen 134 TDLKIWDIRKKGCSHTYK--------SH----TRVVDVLR-LSPD---GR-WVASGGEDNTVKIWDLTA-GKLSKEFKSH 195 (825)
T ss_pred ccceehhhhccCceeeec--------CC----cceeEEEe-ecCC---Cc-eeeccCCcceeeeecccc-cccccccccc
Confidence 999999999888888888 56 33455555 9998 66 999999999999999998 9999999999
Q ss_pred CcceEEEEEeCCCCeEEEecCCCcEEEEecCCCeeeEe-------eeeeeecCCCceec
Q 021291 252 LEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTYVLF-------GIGFVCDQEGNKFG 303 (314)
Q Consensus 252 ~~~v~~~~~~~~~~~l~s~s~dg~i~iw~~~~~~~~~~-------~~~~~~~~~~~~~~ 303 (314)
...|..+.|+|..-++++||.|+++++||+++-+.+.. ..+..+++++..+.
T Consensus 196 e~~v~sle~hp~e~Lla~Gs~d~tv~f~dletfe~I~s~~~~~~~v~~~~fn~~~~~~~ 254 (825)
T KOG0267|consen 196 EGKVQSLEFHPLEVLLAPGSSDRTVRFWDLETFEVISSGKPETDGVRSLAFNPDGKIVL 254 (825)
T ss_pred cccccccccCchhhhhccCCCCceeeeeccceeEEeeccCCccCCceeeeecCCceeee
Confidence 99999999999999999999999999999996554443 33345556665543
No 109
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.92 E-value=4.4e-23 Score=154.34 Aligned_cols=235 Identities=17% Similarity=0.242 Sum_probs=162.3
Q ss_pred EEecCCCCceeEEEEccCCCEEEEecCCCeEEEEeCCCCeEEEEEeccCCcccEEEEEEcccCCCCeEEEeecCCeEEEE
Q 021291 12 AVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCW 91 (314)
Q Consensus 12 ~~l~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~v~iw 91 (314)
+....|.++|.+++|+.||..+++|+.|+.+++||+.++ .+..+..|. ++|.++.|-+......|++||.|.+|+.|
T Consensus 66 ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~S~-Q~~~v~~Hd--~pvkt~~wv~~~~~~cl~TGSWDKTlKfW 142 (347)
T KOG0647|consen 66 KAQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLASG-QVSQVAAHD--APVKTCHWVPGMNYQCLVTGSWDKTLKFW 142 (347)
T ss_pred hhhhccCCCeEEEEEccCCceEEeeccCCceEEEEccCC-Ceeeeeecc--cceeEEEEecCCCcceeEecccccceeec
Confidence 344568999999999999999999999999999999998 455677888 45999999883334589999999999999
Q ss_pred eCCCCCCCCCCeeeeecceeeEEEeeee-eccccccccCCCCcceeeccCCceeeecCCCCCC-----ceeccCCCceEE
Q 021291 92 DIENGGLSSNPSLTIKTNSYHFCKLSLV-KEPYANAKQANEPKDCYEREVGETVDTDSLCDSK-----DDVPAEGPKYMA 165 (314)
Q Consensus 92 d~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~ 165 (314)
|.+....+. ++...... +..+ ..+............++.++.............. ++...+.+..+
T Consensus 143 D~R~~~pv~----t~~LPeRv---Ya~Dv~~pm~vVata~r~i~vynL~n~~te~k~~~SpLk~Q~R~va~f~d~~~~a- 214 (347)
T KOG0647|consen 143 DTRSSNPVA----TLQLPERV---YAADVLYPMAVVATAERHIAVYNLENPPTEFKRIESPLKWQTRCVACFQDKDGFA- 214 (347)
T ss_pred ccCCCCeee----eeecccee---eehhccCceeEEEecCCcEEEEEcCCCcchhhhhcCcccceeeEEEEEecCCceE-
Confidence 999765432 33222111 1111 1233334444455566666544322222211111 66667766554
Q ss_pred EeecCcCeEEEEecCCCceeeeecccccCCCCCcCCC--C---CceeeeEEEecCCCCCCceEEEEeecCCcEEEEEccC
Q 021291 166 VAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSK--G---RGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRN 240 (314)
Q Consensus 166 ~~g~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~h~~~--~---~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~ 240 (314)
-|+-+|.+.+..+..+.....|... -|... . --.+.+++ |+|.. | .|++++.||++.+||-+.
T Consensus 215 -lGsiEGrv~iq~id~~~~~~nFtFk------CHR~~~~~~~~VYaVNsi~-FhP~h--g--tlvTaGsDGtf~FWDkda 282 (347)
T KOG0647|consen 215 -LGSIEGRVAIQYIDDPNPKDNFTFK------CHRSTNSVNDDVYAVNSIA-FHPVH--G--TLVTAGSDGTFSFWDKDA 282 (347)
T ss_pred -eeeecceEEEEecCCCCccCceeEE------EeccCCCCCCceEEecceE-eeccc--c--eEEEecCCceEEEecchh
Confidence 3777899999988876333333222 23211 1 12455666 99973 3 799999999999999987
Q ss_pred CCCceEeeecCCcceEEEEEeCCCCeEEEe
Q 021291 241 PGIPLTAMKVHLEPVLCLSIDESCNGGISG 270 (314)
Q Consensus 241 ~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~ 270 (314)
...+.+.+.|..+|++.+|+.+|.+++-+
T Consensus 283 -r~kLk~s~~~~qpItcc~fn~~G~ifaYA 311 (347)
T KOG0647|consen 283 -RTKLKTSETHPQPITCCSFNRNGSIFAYA 311 (347)
T ss_pred -hhhhhccCcCCCccceeEecCCCCEEEEE
Confidence 77788888899999999999999987544
No 110
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.92 E-value=1.5e-22 Score=151.97 Aligned_cols=231 Identities=13% Similarity=0.220 Sum_probs=158.2
Q ss_pred cCCCCceeEEEEccCCCEEEEecCCCeEEEEeCCCC----eEEEEEeccCCcccEEEEEEcccCCCCeEEEeecCCeEEE
Q 021291 15 RGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQH----RTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKC 90 (314)
Q Consensus 15 ~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~----~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~v~i 90 (314)
.+|.+-|.|+.|.+.|+.+|||+.|++|+|||.++. .+....+.|.+. |..+.|.+..-|+.+++++.|+++.|
T Consensus 10 s~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~S--i~rV~WAhPEfGqvvA~cS~Drtv~i 87 (361)
T KOG2445|consen 10 SGHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGS--IWRVVWAHPEFGQVVATCSYDRTVSI 87 (361)
T ss_pred cCCcceeeeeeecccCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCc--EEEEEecCccccceEEEEecCCceee
Confidence 479999999999999999999999999999996543 566778889855 99999988667899999999999999
Q ss_pred EeCCCCCCCCCCeeeeecceeeEEEeeeeeccccccccCCCCcceeeccCCceeeecCCCCCCceeccCCCceEEEeecC
Q 021291 91 WDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQ 170 (314)
Q Consensus 91 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 170 (314)
|.-..... ............... ....+ .++.|.|....+.+++++.
T Consensus 88 WEE~~~~~--------~~~~~~Wv~~ttl~D---------srssV----------------~DV~FaP~hlGLklA~~~a 134 (361)
T KOG2445|consen 88 WEEQEKSE--------EAHGRRWVRRTTLVD---------SRSSV----------------TDVKFAPKHLGLKLAAASA 134 (361)
T ss_pred eeeccccc--------ccccceeEEEEEeec---------CCcce----------------eEEEecchhcceEEEEecc
Confidence 98642211 010000000000000 00000 0056888777777778888
Q ss_pred cCeEEEEecCCCceeeeecccc-cCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEeecC-----CcEEEEEccCCC--
Q 021291 171 LSEVEIWDLNTAERCTRLHQNS-CGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYED-----GSILVWDIRNPG-- 242 (314)
Q Consensus 171 d~~i~vwd~~~~~~~~~~~~~~-~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~d-----g~i~vwd~~~~~-- 242 (314)
||.++||+....-.+....... ......-.......+.|+. |+|..-... +|++|+.+ +.++||.....+
T Consensus 135 DG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~~~~~~~~Cvs-Wn~sr~~~p-~iAvgs~e~a~~~~~~~Iye~~e~~rK 212 (361)
T KOG2445|consen 135 DGILRIYEAPDPMNLSQWTLQHEIQNVIDPPGKNKQPCFCVS-WNPSRMHEP-LIAVGSDEDAPHLNKVKIYEYNENGRK 212 (361)
T ss_pred CcEEEEEecCCccccccchhhhhhhhccCCcccccCcceEEe-eccccccCc-eEEEEcccCCccccceEEEEecCCcce
Confidence 9999999876543332222100 0000011122455778887 998654333 78888876 588999876534
Q ss_pred -CceEeeecCCcceEEEEEeCC----CCeEEEecCCCcEEEEecCC
Q 021291 243 -IPLTAMKVHLEPVLCLSIDES----CNGGISGGADQKIVLYNLDH 283 (314)
Q Consensus 243 -~~~~~~~~h~~~v~~~~~~~~----~~~l~s~s~dg~i~iw~~~~ 283 (314)
..+.++.+|.++|++++|.|+ ...||+++.|| |+||++..
T Consensus 213 w~kva~L~d~~dpI~di~wAPn~Gr~y~~lAvA~kDg-v~I~~v~~ 257 (361)
T KOG2445|consen 213 WLKVAELPDHTDPIRDISWAPNIGRSYHLLAVATKDG-VRIFKVKV 257 (361)
T ss_pred eeeehhcCCCCCcceeeeeccccCCceeeEEEeecCc-EEEEEEee
Confidence 345667799999999999774 45689999999 99999984
No 111
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.92 E-value=7e-23 Score=168.89 Aligned_cols=245 Identities=17% Similarity=0.263 Sum_probs=188.1
Q ss_pred CCceEEecCCCCceeEEEEccCCCEEEEecCCCeEEEEeCCCCeEEE--EEeccCCcccEEE-EEEcccCCCCeEEEeec
Q 021291 8 PDPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVS--SSWVHSAAHGIVS-VATGPSIGLNKVISQGR 84 (314)
Q Consensus 8 ~~~~~~l~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~--~~~~~~~~~~v~~-~~~~~~~~~~~l~s~~~ 84 (314)
.+.-+.+.||...|..+++.+. ..++++|.||++++|+-..++.+. .+.+|. +.|.. ++|.+ .++..+++|+.
T Consensus 4 Y~ls~~l~gH~~DVr~v~~~~~-~~i~s~sRd~t~~vw~~~~~~~l~~~~~~~~~--g~i~~~i~y~e-~~~~~l~~g~~ 79 (745)
T KOG0301|consen 4 YKLSHELEGHKSDVRAVAVTDG-VCIISGSRDGTVKVWAKKGKQYLETHAFEGPK--GFIANSICYAE-SDKGRLVVGGM 79 (745)
T ss_pred ceeEEEeccCccchheeEecCC-eEEeecCCCCceeeeeccCcccccceecccCc--ceeeccceecc-ccCcceEeecc
Confidence 4567899999999999998754 489999999999999965554443 355555 44666 88876 26667999999
Q ss_pred CCeEEEEeCCCCCCCCCCeeeeecceeeEEEeeeeeccccccccCCCCcceeeccCCceeeecCCCCCC----ceeccCC
Q 021291 85 DGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSK----DDVPAEG 160 (314)
Q Consensus 85 dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~ 160 (314)
|.+|.+|...+. .|.+.+..+....|.++...........-.....+|... .....+.+|.. +..-|++
T Consensus 80 D~~i~v~~~~~~----~P~~~LkgH~snVC~ls~~~~~~~iSgSWD~TakvW~~~---~l~~~l~gH~asVWAv~~l~e~ 152 (745)
T KOG0301|consen 80 DTTIIVFKLSQA----EPLYTLKGHKSNVCSLSIGEDGTLISGSWDSTAKVWRIG---ELVYSLQGHTASVWAVASLPEN 152 (745)
T ss_pred cceEEEEecCCC----CchhhhhccccceeeeecCCcCceEecccccceEEecch---hhhcccCCcchheeeeeecCCC
Confidence 999999999887 457788999999998887665553333444444555443 33344888888 4445666
Q ss_pred CceEEEeecCcCeEEEEecCCCceeeeecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEeecCCcEEEEEccC
Q 021291 161 PKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRN 240 (314)
Q Consensus 161 ~~~~~~~g~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~ 240 (314)
.++ +|+.|.+|++|.- ++.+.+|. +|.+ .+..++ +-|+ + .+++++.||.|++|++.
T Consensus 153 --~~v-TgsaDKtIklWk~--~~~l~tf~--------gHtD----~VRgL~-vl~~---~--~flScsNDg~Ir~w~~~- 208 (745)
T KOG0301|consen 153 --TYV-TGSADKTIKLWKG--GTLLKTFS--------GHTD----CVRGLA-VLDD---S--HFLSCSNDGSIRLWDLD- 208 (745)
T ss_pred --cEE-eccCcceeeeccC--Cchhhhhc--------cchh----heeeeE-EecC---C--CeEeecCCceEEEEecc-
Confidence 233 7888999999974 77888898 8855 566665 7765 2 59999999999999995
Q ss_pred CCCceEeeecCCcceEEEEEeCCCCeEEEecCCCcEEEEecCCCeeeE
Q 021291 241 PGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTYVL 288 (314)
Q Consensus 241 ~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~iw~~~~~~~~~ 288 (314)
+.++.++.+|+.-|.+++...++..++|++.|++++||+.....+..
T Consensus 209 -ge~l~~~~ghtn~vYsis~~~~~~~Ivs~gEDrtlriW~~~e~~q~I 255 (745)
T KOG0301|consen 209 -GEVLLEMHGHTNFVYSISMALSDGLIVSTGEDRTLRIWKKDECVQVI 255 (745)
T ss_pred -CceeeeeeccceEEEEEEecCCCCeEEEecCCceEEEeecCceEEEE
Confidence 89999999999999999987777789999999999999988444433
No 112
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.92 E-value=3.8e-22 Score=167.75 Aligned_cols=276 Identities=15% Similarity=0.140 Sum_probs=193.0
Q ss_pred CCCceEEecCCCCceeEEEEccCCCEEEEecCCCeEEEEeCCCCeEEEEEeccCCcccEEEEEEcccCCCCe-EEEeecC
Q 021291 7 PPDPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNK-VISQGRD 85 (314)
Q Consensus 7 ~~~~~~~l~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-l~s~~~d 85 (314)
.++.+++++++.+.|+++.=+|-=..+|.|..+|+|.|++++.++.+.+++... ++|+.++|.. ||+. +++|+..
T Consensus 191 t~K~v~~f~~~~s~IT~ieqsPaLDVVaiG~~~G~ViifNlK~dkil~sFk~d~--g~VtslSFrt--DG~p~las~~~~ 266 (910)
T KOG1539|consen 191 TGKVVYTFQEFFSRITAIEQSPALDVVAIGLENGTVIIFNLKFDKILMSFKQDW--GRVTSLSFRT--DGNPLLASGRSN 266 (910)
T ss_pred cCcEEEEecccccceeEeccCCcceEEEEeccCceEEEEEcccCcEEEEEEccc--cceeEEEecc--CCCeeEEeccCC
Confidence 468899999999999999999977799999999999999999999999998765 4599999998 7775 5566777
Q ss_pred CeEEEEeCCCCCCCC------------------CCeeeeec--ceeeEEEee-----------------------eee--
Q 021291 86 GTVKCWDIENGGLSS------------------NPSLTIKT--NSYHFCKLS-----------------------LVK-- 120 (314)
Q Consensus 86 g~v~iwd~~~~~~~~------------------~~~~~~~~--~~~~~~~~~-----------------------~~~-- 120 (314)
|.+.+||++..+++. +|++.... +......+. ..+
T Consensus 267 G~m~~wDLe~kkl~~v~~nah~~sv~~~~fl~~epVl~ta~~DnSlk~~vfD~~dg~pR~LR~R~GHs~Pp~~irfy~~~ 346 (910)
T KOG1539|consen 267 GDMAFWDLEKKKLINVTRNAHYGSVTGATFLPGEPVLVTAGADNSLKVWVFDSGDGVPRLLRSRGGHSAPPSCIRFYGSQ 346 (910)
T ss_pred ceEEEEEcCCCeeeeeeeccccCCcccceecCCCceEeeccCCCceeEEEeeCCCCcchheeeccCCCCCchheeeeccC
Confidence 999999998765432 00000000 000000000 000
Q ss_pred --------------------------------------------------------------------------------
Q 021291 121 -------------------------------------------------------------------------------- 120 (314)
Q Consensus 121 -------------------------------------------------------------------------------- 120 (314)
T Consensus 347 g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~t 426 (910)
T KOG1539|consen 347 GHFILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKLPPIVEFAFENAREKEWDNVITAHKGKRSAYT 426 (910)
T ss_pred cEEEEecccCcchhhhhhhHHHHhHhhcccccccccccccccchhhhcCCcceeeecccchhhhhcceeEEecCcceEEE
Confidence
Q ss_pred ------------------------------cccc---ccccCCCCcceeeccCCceeeec--CCCCCC--ceeccCCCce
Q 021291 121 ------------------------------EPYA---NAKQANEPKDCYEREVGETVDTD--SLCDSK--DDVPAEGPKY 163 (314)
Q Consensus 121 ------------------------------~~~~---~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~--~~~~~~~~~~ 163 (314)
+.+. ......+....+++..+...... -..|.. ..++-|+.+-
T Consensus 427 W~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~CGNF~~IG~S~G~Id~fNmQSGi~r~sf~~~~ah~~~V~gla~D~~n~ 506 (910)
T KOG1539|consen 427 WNFRNKTSGRHVLDPKRFKKDDINATAVCVSFCGNFVFIGYSKGTIDRFNMQSGIHRKSFGDSPAHKGEVTGLAVDGTNR 506 (910)
T ss_pred EeccCcccccEEecCccccccCcceEEEEEeccCceEEEeccCCeEEEEEcccCeeecccccCccccCceeEEEecCCCc
Confidence 0000 00000111111122111111111 123333 4555565554
Q ss_pred EEEeecCcCeEEEEecCCCceeeeecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEeecCCcEEEEEccCCCC
Q 021291 164 MAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGI 243 (314)
Q Consensus 164 ~~~~g~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~ 243 (314)
++++++.+|.+++||......+..+.. ++ .+..+. ++... . .++.+..|-.|+++|..+ .+
T Consensus 507 ~~vsa~~~Gilkfw~f~~k~l~~~l~l-------~~------~~~~iv-~hr~s---~-l~a~~~ddf~I~vvD~~t-~k 567 (910)
T KOG1539|consen 507 LLVSAGADGILKFWDFKKKVLKKSLRL-------GS------SITGIV-YHRVS---D-LLAIALDDFSIRVVDVVT-RK 567 (910)
T ss_pred eEEEccCcceEEEEecCCcceeeeecc-------CC------Ccceee-eeehh---h-hhhhhcCceeEEEEEchh-hh
Confidence 444666799999999999887777763 22 444444 55542 1 789999999999999998 88
Q ss_pred ceEeeecCCcceEEEEEeCCCCeEEEecCCCcEEEEecCCCeeeEe------eeeeeecCCCceecee
Q 021291 244 PLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTYVLF------GIGFVCDQEGNKFGTT 305 (314)
Q Consensus 244 ~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~iw~~~~~~~~~~------~~~~~~~~~~~~~~~~ 305 (314)
.++.+.+|.+.|++++|+|||++|++++.|++|++||+.++..+-. +..++++|+|..++++
T Consensus 568 vvR~f~gh~nritd~~FS~DgrWlisasmD~tIr~wDlpt~~lID~~~vd~~~~sls~SPngD~LAT~ 635 (910)
T KOG1539|consen 568 VVREFWGHGNRITDMTFSPDGRWLISASMDSTIRTWDLPTGTLIDGLLVDSPCTSLSFSPNGDFLATV 635 (910)
T ss_pred hhHHhhccccceeeeEeCCCCcEEEEeecCCcEEEEeccCcceeeeEecCCcceeeEECCCCCEEEEE
Confidence 9999999999999999999999999999999999999999998764 5678899999999987
No 113
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.92 E-value=2.3e-23 Score=175.26 Aligned_cols=203 Identities=12% Similarity=0.194 Sum_probs=139.6
Q ss_pred EEe-ccCCcccEEEEEEcccCCCCeEEEeecCCeEEEEeCCCCCCCCCCeeeeecceeeEEE--------eeeeeccc--
Q 021291 55 SSW-VHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCK--------LSLVKEPY-- 123 (314)
Q Consensus 55 ~~~-~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~-- 123 (314)
.+. .|.+. |+++.|++ ||++||+|+.|+.|+||.+..-+... .......... ..+.....
T Consensus 261 e~~~ah~ga--Iw~mKFS~--DGKyLAsaGeD~virVWkVie~e~~~-----~~~~~~~~~~~~~~~~s~~~p~~s~~~~ 331 (712)
T KOG0283|consen 261 EISNAHKGA--IWAMKFSH--DGKYLASAGEDGVIRVWKVIESERMR-----VAEGDSSCMYFEYNANSQIEPSTSSEEK 331 (712)
T ss_pred ccccccCCc--EEEEEeCC--CCceeeecCCCceEEEEEEeccchhc-----ccccccchhhhhhhhccccCcccccccc
Confidence 344 67755 99999999 99999999999999999987632211 0000000000 00000000
Q ss_pred ----cccccCCCCccee-----eccCCceeeecCCCCCC----ceeccCCCceEEEeecCcCeEEEEecCCCceeeeecc
Q 021291 124 ----ANAKQANEPKDCY-----EREVGETVDTDSLCDSK----DDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQ 190 (314)
Q Consensus 124 ----~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~g~~d~~i~vwd~~~~~~~~~~~~ 190 (314)
............. ...-...+...+.+|.+ ++|+.++ +|+ +++.|.+|+||++...+++..|.
T Consensus 332 ~~~~~s~~~~~~~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn~--fLL-SSSMDKTVRLWh~~~~~CL~~F~- 407 (712)
T KOG0283|consen 332 ISSRTSSSRKGSQSPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKNN--FLL-SSSMDKTVRLWHPGRKECLKVFS- 407 (712)
T ss_pred ccccccccccccCCccccCCCccccccccchhhhhccchhheecccccCC--eeE-eccccccEEeecCCCcceeeEEe-
Confidence 0000000000001 11112345566788887 6777654 444 78889999999999999999997
Q ss_pred cccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEeecCCcEEEEEccCCCCceEeeecCCcceEEEEEeCCCCeEEEe
Q 021291 191 NSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISG 270 (314)
Q Consensus 191 ~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~ 270 (314)
| ...++|++ |+|. |++ ||++|+.||.|+||++.. .+.+. +..-...|++++|.|+|++.+.|
T Consensus 408 --------H----ndfVTcVa-FnPv--DDr-yFiSGSLD~KvRiWsI~d-~~Vv~-W~Dl~~lITAvcy~PdGk~avIG 469 (712)
T KOG0283|consen 408 --------H----NDFVTCVA-FNPV--DDR-YFISGSLDGKVRLWSISD-KKVVD-WNDLRDLITAVCYSPDGKGAVIG 469 (712)
T ss_pred --------c----CCeeEEEE-eccc--CCC-cEeecccccceEEeecCc-CeeEe-ehhhhhhheeEEeccCCceEEEE
Confidence 4 56999998 9997 344 999999999999999996 45444 44445899999999999999999
Q ss_pred cCCCcEEEEecCCCeeeE
Q 021291 271 GADQKIVLYNLDHSTYVL 288 (314)
Q Consensus 271 s~dg~i~iw~~~~~~~~~ 288 (314)
+.+|.+++|++...+...
T Consensus 470 t~~G~C~fY~t~~lk~~~ 487 (712)
T KOG0283|consen 470 TFNGYCRFYDTEGLKLVS 487 (712)
T ss_pred EeccEEEEEEccCCeEEE
Confidence 999999999998776554
No 114
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.92 E-value=3.4e-21 Score=139.00 Aligned_cols=249 Identities=15% Similarity=0.150 Sum_probs=176.4
Q ss_pred CceEEecCCCCceeEEEEccCCCEEEEecCCCeEEEEeCCCCeE-----EEEEeccCCcccEEEEEEcc--cCCCCeEEE
Q 021291 9 DPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRT-----VSSSWVHSAAHGIVSVATGP--SIGLNKVIS 81 (314)
Q Consensus 9 ~~~~~l~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~-----~~~~~~~~~~~~v~~~~~~~--~~~~~~l~s 81 (314)
-..+.-+.|.+.|.|.+|+|+|.+|++|+.|.+|++.-.+...+ -..+..|.+. |..++|-. ...+..|++
T Consensus 80 v~~kr~khhkgsiyc~~ws~~geliatgsndk~ik~l~fn~dt~~~~g~dle~nmhdgt--irdl~fld~~~s~~~il~s 157 (350)
T KOG0641|consen 80 VLCKRNKHHKGSIYCTAWSPCGELIATGSNDKTIKVLPFNADTCNATGHDLEFNMHDGT--IRDLAFLDDPESGGAILAS 157 (350)
T ss_pred EEeeeccccCccEEEEEecCccCeEEecCCCceEEEEecccccccccCcceeeeecCCc--eeeeEEecCCCcCceEEEe
Confidence 34556678999999999999999999999999999986654322 2345667755 99999964 223456776
Q ss_pred eec-CCeEEEEeCCCCCCCCCCeeeeecceeeEEEeeeeeccccccccCCCCcceeeccCCceeeecC-CCCCC------
Q 021291 82 QGR-DGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDS-LCDSK------ 153 (314)
Q Consensus 82 ~~~-dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~------ 153 (314)
++. |..|.+-|...++-. ..+..+..+...+-..................|+++....+...- ..|..
T Consensus 158 ~gagdc~iy~tdc~~g~~~----~a~sghtghilalyswn~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessa 233 (350)
T KOG0641|consen 158 AGAGDCKIYITDCGRGQGF----HALSGHTGHILALYSWNGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSA 233 (350)
T ss_pred cCCCcceEEEeecCCCCcc----eeecCCcccEEEEEEecCcEEEccCCCceEEEEeeeccceeeeccCcccCCCcccce
Confidence 554 677777788777543 344444444433322222222233344456667776554333221 11111
Q ss_pred ---ceeccCCCceEEEeecCcCeEEEEecCCCceeeeecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEeecC
Q 021291 154 ---DDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYED 230 (314)
Q Consensus 154 ---~~~~~~~~~~~~~~g~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~d 230 (314)
+++.|.|+ ++++|..|....+||++.++.++.+. .| ...+.++. |+|. -.++++++.|
T Consensus 234 vaav~vdpsgr--ll~sg~~dssc~lydirg~r~iq~f~--------ph----sadir~vr-fsp~----a~yllt~syd 294 (350)
T KOG0641|consen 234 VAAVAVDPSGR--LLASGHADSSCMLYDIRGGRMIQRFH--------PH----SADIRCVR-FSPG----AHYLLTCSYD 294 (350)
T ss_pred eEEEEECCCcc--eeeeccCCCceEEEEeeCCceeeeeC--------CC----ccceeEEE-eCCC----ceEEEEeccc
Confidence 77889886 33489999999999999999999988 56 44677787 9995 3399999999
Q ss_pred CcEEEEEccCC---CCceEeeecCCcceEEEEEeCCCCeEEEecCCCcEEEEecC
Q 021291 231 GSILVWDIRNP---GIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLD 282 (314)
Q Consensus 231 g~i~vwd~~~~---~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~iw~~~ 282 (314)
..|++=|+.-. .-++.....|.+.+..+.|+|+..-+++.|.|.++.+|-+.
T Consensus 295 ~~ikltdlqgdla~el~~~vv~ehkdk~i~~rwh~~d~sfisssadkt~tlwa~~ 349 (350)
T KOG0641|consen 295 MKIKLTDLQGDLAHELPIMVVAEHKDKAIQCRWHPQDFSFISSSADKTATLWALN 349 (350)
T ss_pred ceEEEeecccchhhcCceEEEEeccCceEEEEecCccceeeeccCcceEEEeccC
Confidence 99999998721 23445566899999999999999889999999999999764
No 115
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.91 E-value=1.3e-22 Score=167.42 Aligned_cols=236 Identities=14% Similarity=0.256 Sum_probs=183.8
Q ss_pred eEEecCCCCceeE-EEEcc-CCCEEEEecCCCeEEEEeCCCCeEEEEEeccCCcccEEEEEEcccCCCCeEEEeecCCeE
Q 021291 11 VAVLRGHRASVTD-VCFHQ-TKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTV 88 (314)
Q Consensus 11 ~~~l~~h~~~v~~-~~~~~-~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~v 88 (314)
.+.+.+|.+-|.+ ++|.+ ++-.|++|+.|.+|.+|...+..++..+++|+.. |.+++... ++. +++||+|.++
T Consensus 50 ~~~~~~~~g~i~~~i~y~e~~~~~l~~g~~D~~i~v~~~~~~~P~~~LkgH~sn--VC~ls~~~--~~~-~iSgSWD~Ta 124 (745)
T KOG0301|consen 50 THAFEGPKGFIANSICYAESDKGRLVVGGMDTTIIVFKLSQAEPLYTLKGHKSN--VCSLSIGE--DGT-LISGSWDSTA 124 (745)
T ss_pred ceecccCcceeeccceeccccCcceEeecccceEEEEecCCCCchhhhhccccc--eeeeecCC--cCc-eEecccccce
Confidence 3557788888887 88886 5567999999999999999999999999999965 99999877 655 9999999999
Q ss_pred EEEeCCCCCCCCCCeeeeecceeeEEEeeeeeccccccccCCCCcceeeccCCceeeecCCCCCC----ceeccCCCceE
Q 021291 89 KCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSK----DDVPAEGPKYM 164 (314)
Q Consensus 89 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~ 164 (314)
++|....-.. .+..+... .+....-+.. ....++....+.+..+......+.+|.+ +++-+++. ++
T Consensus 125 kvW~~~~l~~------~l~gH~as--VWAv~~l~e~-~~vTgsaDKtIklWk~~~~l~tf~gHtD~VRgL~vl~~~~-fl 194 (745)
T KOG0301|consen 125 KVWRIGELVY------SLQGHTAS--VWAVASLPEN-TYVTGSADKTIKLWKGGTLLKTFSGHTDCVRGLAVLDDSH-FL 194 (745)
T ss_pred EEecchhhhc------ccCCcchh--eeeeeecCCC-cEEeccCcceeeeccCCchhhhhccchhheeeeEEecCCC-eE
Confidence 9998765322 23333322 2233333333 4556666777777777888888999988 78888764 33
Q ss_pred EEeecCcCeEEEEecCCCceeeeecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEeecCCcEEEEEccCCCCc
Q 021291 165 AVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIP 244 (314)
Q Consensus 165 ~~~g~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~ 244 (314)
+++.||.|++|++ +++.+..+. +| +..++++. ..++ +. .++++++|++++||+.. .+
T Consensus 195 --ScsNDg~Ir~w~~-~ge~l~~~~--------gh----tn~vYsis-~~~~---~~-~Ivs~gEDrtlriW~~~---e~ 251 (745)
T KOG0301|consen 195 --SCSNDGSIRLWDL-DGEVLLEMH--------GH----TNFVYSIS-MALS---DG-LIVSTGEDRTLRIWKKD---EC 251 (745)
T ss_pred --eecCCceEEEEec-cCceeeeee--------cc----ceEEEEEE-ecCC---CC-eEEEecCCceEEEeecC---ce
Confidence 6778999999999 788888887 77 55788887 5554 33 89999999999999976 56
Q ss_pred eEeeecCCcceEEEEEeCCCCeEEEecCCCcEEEEecCCCe
Q 021291 245 LTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHST 285 (314)
Q Consensus 245 ~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~iw~~~~~~ 285 (314)
.+.+.-....|+++.+-++|. |++|+.||.||||..+..+
T Consensus 252 ~q~I~lPttsiWsa~~L~NgD-Ivvg~SDG~VrVfT~~k~R 291 (745)
T KOG0301|consen 252 VQVITLPTTSIWSAKVLLNGD-IVVGGSDGRVRVFTVDKDR 291 (745)
T ss_pred EEEEecCccceEEEEEeeCCC-EEEeccCceEEEEEecccc
Confidence 777775566899999988886 7899999999999887543
No 116
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.91 E-value=9e-25 Score=180.74 Aligned_cols=199 Identities=22% Similarity=0.369 Sum_probs=166.2
Q ss_pred ceEEecCCCCceeEEEEccCCCEEEEecCCCeEEEEeCCCCeEEEEEeccCCcccEEEEEEcccCCCCeEEEeecCCeEE
Q 021291 10 PVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVK 89 (314)
Q Consensus 10 ~~~~l~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~v~ 89 (314)
.+-.|.+|..+|.++.|+++..+|++|+.+|+|++||+++++.++++.+|... +.++.|+| -+.++++++.|+.++
T Consensus 62 ~i~S~~~hespIeSl~f~~~E~LlaagsasgtiK~wDleeAk~vrtLtgh~~~--~~sv~f~P--~~~~~a~gStdtd~~ 137 (825)
T KOG0267|consen 62 AITSLTGHESPIESLTFDTSERLLAAGSASGTIKVWDLEEAKIVRTLTGHLLN--ITSVDFHP--YGEFFASGSTDTDLK 137 (825)
T ss_pred hhheeeccCCcceeeecCcchhhhcccccCCceeeeehhhhhhhhhhhccccC--cceeeecc--ceEEeccccccccce
Confidence 44568999999999999999999999999999999999999999999999955 99999999 889999999999999
Q ss_pred EEeCCCCCCCCCCeeeeecceeeEEEeeeeeccccccccCCCCcceeeccCCceeeecCCCCCCceeccCCCceEEEeec
Q 021291 90 CWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGE 169 (314)
Q Consensus 90 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 169 (314)
+||++...+.. ....+...... +.|+|+|... +.|+
T Consensus 138 iwD~Rk~Gc~~----~~~s~~~vv~~--------------------------------------l~lsP~Gr~v--~~g~ 173 (825)
T KOG0267|consen 138 IWDIRKKGCSH----TYKSHTRVVDV--------------------------------------LRLSPDGRWV--ASGG 173 (825)
T ss_pred ehhhhccCcee----eecCCcceeEE--------------------------------------EeecCCCcee--eccC
Confidence 99999766643 33332221111 5689999743 3677
Q ss_pred CcCeEEEEecCCCceeeeecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEeecCCcEEEEEccCCCCceEeee
Q 021291 170 QLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMK 249 (314)
Q Consensus 170 ~d~~i~vwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~~~~~ 249 (314)
.|.++++||...++....|. +| .+.+.++. |+|.+- +++.|+.|++|++||+++ -+.+...+
T Consensus 174 ed~tvki~d~~agk~~~ef~--------~~----e~~v~sle-~hp~e~----Lla~Gs~d~tv~f~dlet-fe~I~s~~ 235 (825)
T KOG0267|consen 174 EDNTVKIWDLTAGKLSKEFK--------SH----EGKVQSLE-FHPLEV----LLAPGSSDRTVRFWDLET-FEVISSGK 235 (825)
T ss_pred Ccceeeeecccccccccccc--------cc----cccccccc-cCchhh----hhccCCCCceeeeeccce-eEEeeccC
Confidence 79999999999999999998 66 45677777 999733 899999999999999998 67777777
Q ss_pred cCCcceEEEEEeCCCCeEEEecCCC
Q 021291 250 VHLEPVLCLSIDESCNGGISGGADQ 274 (314)
Q Consensus 250 ~h~~~v~~~~~~~~~~~l~s~s~dg 274 (314)
.....|.+++|++++..+.+|..+.
T Consensus 236 ~~~~~v~~~~fn~~~~~~~~G~q~s 260 (825)
T KOG0267|consen 236 PETDGVRSLAFNPDGKIVLSGEQIS 260 (825)
T ss_pred CccCCceeeeecCCceeeecCchhh
Confidence 7788999999999999888887654
No 117
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=99.91 E-value=1.3e-23 Score=159.01 Aligned_cols=213 Identities=18% Similarity=0.185 Sum_probs=169.3
Q ss_pred CCCceEEec-CCCCceeEEEEccCCCEEEEecCCCeEEEEeCCCCeEEEEEeccCCcccEEEEEEcccCCCCeEEEeecC
Q 021291 7 PPDPVAVLR-GHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRD 85 (314)
Q Consensus 7 ~~~~~~~l~-~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d 85 (314)
.+.+++.|. +|+..|+|+.|+.|+..+++++.|.+++|.-++.|++++.+++|. ..|....|.+ +|..+++++.|
T Consensus 294 tG~ClRrFdrAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSGK~LKEfrGHs--Syvn~a~ft~--dG~~iisaSsD 369 (508)
T KOG0275|consen 294 TGQCLRRFDRAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKSGKCLKEFRGHS--SYVNEATFTD--DGHHIISASSD 369 (508)
T ss_pred cchHHHHhhhhhccCeeEEEEccCcchhhcccccceEEEeccccchhHHHhcCcc--ccccceEEcC--CCCeEEEecCC
Confidence 345666676 899999999999999999999999999999999999999999999 5599999999 99999999999
Q ss_pred CeEEEEeCCCCCCCCCCeeeeecceeeEEEeeeeeccccccccCCCCcceeeccCCceeeecCCCCCCceeccCCCceEE
Q 021291 86 GTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMA 165 (314)
Q Consensus 86 g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (314)
|+|++|+..+.+|.. +++.........+ +-.-|.+..-++
T Consensus 370 gtvkvW~~KtteC~~----Tfk~~~~d~~vns------------------------------------v~~~PKnpeh~i 409 (508)
T KOG0275|consen 370 GTVKVWHGKTTECLS----TFKPLGTDYPVNS------------------------------------VILLPKNPEHFI 409 (508)
T ss_pred ccEEEecCcchhhhh----hccCCCCccccee------------------------------------EEEcCCCCceEE
Confidence 999999999998866 2222211111001 112233333344
Q ss_pred EeecCcCeEEEEecCCCceeeeecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEeecCCcEEEEEccCCCCce
Q 021291 166 VAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPL 245 (314)
Q Consensus 166 ~~g~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~ 245 (314)
+ +...++|++-++. |+.++.+.. |.. ..+...+.. .+|. |+ ++++.++|+.++.|...+ +..-
T Consensus 410 V-CNrsntv~imn~q-GQvVrsfsS-------GkR--EgGdFi~~~-lSpk---Ge-wiYcigED~vlYCF~~~s-G~LE 472 (508)
T KOG0275|consen 410 V-CNRSNTVYIMNMQ-GQVVRSFSS-------GKR--EGGDFINAI-LSPK---GE-WIYCIGEDGVLYCFSVLS-GKLE 472 (508)
T ss_pred E-EcCCCeEEEEecc-ceEEeeecc-------CCc--cCCceEEEE-ecCC---Cc-EEEEEccCcEEEEEEeec-Ccee
Confidence 3 3345889999875 777888763 221 233344444 8987 66 999999999999999998 8899
Q ss_pred EeeecCCcceEEEEEeCCCCeEEEecCCCcEEEEe
Q 021291 246 TAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYN 280 (314)
Q Consensus 246 ~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~iw~ 280 (314)
.++..|...|..++.+|..+.|++-+.||.+++|.
T Consensus 473 ~tl~VhEkdvIGl~HHPHqNllAsYsEDgllKLWk 507 (508)
T KOG0275|consen 473 RTLPVHEKDVIGLTHHPHQNLLASYSEDGLLKLWK 507 (508)
T ss_pred eeeecccccccccccCcccchhhhhcccchhhhcC
Confidence 99999999999999999999999999999999995
No 118
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.91 E-value=1.1e-21 Score=166.61 Aligned_cols=247 Identities=15% Similarity=0.155 Sum_probs=171.9
Q ss_pred cCCCCceeEEEEccCCCEEEEecCCCeEEEEeCCCC-eEEEEEeccCCcccEEEEEEcccCCCCeEEEeecCCeEEEEeC
Q 021291 15 RGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQH-RTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDI 93 (314)
Q Consensus 15 ~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd~ 93 (314)
.+|+..-+.++|.|+|.+|++++.||.|++|+.... +....+..+. ..|.+++... ++|++|+.+++|.+|.+
T Consensus 10 yaht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P~ti~~~g--~~v~~ia~~s----~~f~~~s~~~tv~~y~f 83 (933)
T KOG1274|consen 10 YAHTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEEEPETIDISG--ELVSSIACYS----NHFLTGSEQNTVLRYKF 83 (933)
T ss_pred hhccCceEEEEEcCCCCEEEEecCCCceEEeecCCcccCCchhhccC--ceeEEEeecc----cceEEeeccceEEEeeC
Confidence 369999999999999999999999999999997665 5555555455 4488888754 79999999999999999
Q ss_pred CCCCCCCCCeeeeecceeeEEEeeeeeccccccccCCCCcceeeccCCceeeecCCCCCC----ceeccCCCceEEEeec
Q 021291 94 ENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSK----DDVPAEGPKYMAVAGE 169 (314)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~g~ 169 (314)
.+++... ++.--..+...+.++..+.... ...+.....+.+.... .....+.+|.. +.|+|.++.+ + +.+
T Consensus 84 ps~~~~~--iL~Rftlp~r~~~v~g~g~~ia-agsdD~~vK~~~~~D~-s~~~~lrgh~apVl~l~~~p~~~fL-A-vss 157 (933)
T KOG1274|consen 84 PSGEEDT--ILARFTLPIRDLAVSGSGKMIA-AGSDDTAVKLLNLDDS-SQEKVLRGHDAPVLQLSYDPKGNFL-A-VSS 157 (933)
T ss_pred CCCCccc--eeeeeeccceEEEEecCCcEEE-eecCceeEEEEecccc-chheeecccCCceeeeeEcCCCCEE-E-EEe
Confidence 8876432 2222333444444433322211 1122222333333222 33445666766 8889998644 3 344
Q ss_pred CcCeEEEEecCCCceeeeecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEeecCCcEEEEEccCCCCceEeee
Q 021291 170 QLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMK 249 (314)
Q Consensus 170 ~d~~i~vwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~~~~~ 249 (314)
.||.|++||+.++.+..++..... .........+..++ |+|+ |. .+++...|+.|++|+... ..+...+.
T Consensus 158 ~dG~v~iw~~~~~~~~~tl~~v~k----~n~~~~s~i~~~~a-W~Pk---~g-~la~~~~d~~Vkvy~r~~-we~~f~Lr 227 (933)
T KOG1274|consen 158 CDGKVQIWDLQDGILSKTLTGVDK----DNEFILSRICTRLA-WHPK---GG-TLAVPPVDNTVKVYSRKG-WELQFKLR 227 (933)
T ss_pred cCceEEEEEcccchhhhhcccCCc----cccccccceeeeee-ecCC---CC-eEEeeccCCeEEEEccCC-ceeheeec
Confidence 589999999999988777663211 11111134566666 9998 33 677777899999999987 66665554
Q ss_pred --cCCcceEEEEEeCCCCeEEEecCCCcEEEEecCC
Q 021291 250 --VHLEPVLCLSIDESCNGGISGGADQKIVLYNLDH 283 (314)
Q Consensus 250 --~h~~~v~~~~~~~~~~~l~s~s~dg~i~iw~~~~ 283 (314)
.+...+..+.|+|+|+|||+++.||.|.|||+++
T Consensus 228 ~~~~ss~~~~~~wsPnG~YiAAs~~~g~I~vWnv~t 263 (933)
T KOG1274|consen 228 DKLSSSKFSDLQWSPNGKYIAASTLDGQILVWNVDT 263 (933)
T ss_pred ccccccceEEEEEcCCCcEEeeeccCCcEEEEeccc
Confidence 3445599999999999999999999999999994
No 119
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.91 E-value=1.7e-22 Score=165.15 Aligned_cols=253 Identities=16% Similarity=0.251 Sum_probs=177.8
Q ss_pred eEEecCCCCceeEEEEccCCCEEEEecCCCeEEEEeCCCCeEEEE--EeccCCcccEEEEEEcccCCCCeEEEeecCCeE
Q 021291 11 VAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSS--SWVHSAAHGIVSVATGPSIGLNKVISQGRDGTV 88 (314)
Q Consensus 11 ~~~l~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~--~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~v 88 (314)
++....|...|..++|.|....|++++.|.++++||+++.++... +.+|... |.+++|.|. +...|++|+.||.|
T Consensus 93 lk~~~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~s~l~G~~~~~GH~~S--vkS~cf~~~-n~~vF~tGgRDg~i 169 (720)
T KOG0321|consen 93 LKKPLAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKTSRLVGGRLNLGHTGS--VKSECFMPT-NPAVFCTGGRDGEI 169 (720)
T ss_pred hcccccccceeEeeccCCCceeEEEccCCceeeeeeeccceeecceeecccccc--cchhhhccC-CCcceeeccCCCcE
Confidence 455568999999999999667899999999999999999888776 8889855 999999996 55789999999999
Q ss_pred EEEeCCCCCCCC----------------CCeee---------eecceeeE---EEeeeeeccccccccCCCCcceeeccC
Q 021291 89 KCWDIENGGLSS----------------NPSLT---------IKTNSYHF---CKLSLVKEPYANAKQANEPKDCYEREV 140 (314)
Q Consensus 89 ~iwd~~~~~~~~----------------~~~~~---------~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (314)
.|||++-..... .|... ........ ..+..+....+...+.++...+|+++.
T Consensus 170 llWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk 249 (720)
T KOG0321|consen 170 LLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAASNTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRK 249 (720)
T ss_pred EEEEEeccchhhHHHHhhhhhccccCCCCCCchhhccccccccccCceeeeeEEEEEeccceeeeccCCCcceEEEeecc
Confidence 999987543100 00000 00011111 112222233344555567888999977
Q ss_pred Cceeee-------cCCCCCC-------ceeccCCCceEEEeecCcCeEEEEecCCCce--eeeecccccCCCCCcCCCCC
Q 021291 141 GETVDT-------DSLCDSK-------DDVPAEGPKYMAVAGEQLSEVEIWDLNTAER--CTRLHQNSCGGSPNFSSKGR 204 (314)
Q Consensus 141 ~~~~~~-------~~~~~~~-------~~~~~~~~~~~~~~g~~d~~i~vwd~~~~~~--~~~~~~~~~~~~~~h~~~~~ 204 (314)
...... .+.-|.. +.....|.+++| ++. |+.|++|++.+... +..+. ++ ..
T Consensus 250 ~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~A-sCt-D~sIy~ynm~s~s~sP~~~~s--------g~---~~ 316 (720)
T KOG0321|consen 250 NYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTYLFA-SCT-DNSIYFYNMRSLSISPVAEFS--------GK---LN 316 (720)
T ss_pred cccccccCCCcccCccCcccceeeeEEEEecCCCCeEEE-Eec-CCcEEEEeccccCcCchhhcc--------Cc---cc
Confidence 643222 2222211 555566788876 455 89999999986542 23333 22 12
Q ss_pred ceeeeEEEecCCCCCCceEEEEeecCCcEEEEEccCCCCceEeeecCCcceEEEEEe--CCCCeEEEecCCCcEEEEecC
Q 021291 205 GMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPVLCLSID--ESCNGGISGGADQKIVLYNLD 282 (314)
Q Consensus 205 ~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~~~~~--~~~~~l~s~s~dg~i~iw~~~ 282 (314)
...+--...+|+ +. ++++|+.|...++|.+.++..+...+.+|...|++++|. +.+. ++|++.|-.+++|++.
T Consensus 317 ~sf~vks~lSpd---~~-~l~SgSsd~~ayiw~vs~~e~~~~~l~Ght~eVt~V~w~pS~~t~-v~TcSdD~~~kiW~l~ 391 (720)
T KOG0321|consen 317 SSFYVKSELSPD---DC-SLLSGSSDEQAYIWVVSSPEAPPALLLGHTREVTTVRWLPSATTP-VATCSDDFRVKIWRLS 391 (720)
T ss_pred ceeeeeeecCCC---Cc-eEeccCCCcceeeeeecCccCChhhhhCcceEEEEEeeccccCCC-ceeeccCcceEEEecc
Confidence 222221237777 55 999999999999999999888899999999999999994 4444 7888999999999996
Q ss_pred CC
Q 021291 283 HS 284 (314)
Q Consensus 283 ~~ 284 (314)
.+
T Consensus 392 ~~ 393 (720)
T KOG0321|consen 392 NG 393 (720)
T ss_pred Cc
Confidence 55
No 120
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.91 E-value=2.7e-22 Score=158.03 Aligned_cols=211 Identities=16% Similarity=0.240 Sum_probs=162.5
Q ss_pred eEEecCCCCceeEEEEccCCCEEEEecCCCeEEEEeCCCCeEEEE-E-----------------eccCCcccEEEEEEcc
Q 021291 11 VAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSS-S-----------------WVHSAAHGIVSVATGP 72 (314)
Q Consensus 11 ~~~l~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~-~-----------------~~~~~~~~v~~~~~~~ 72 (314)
++.+..|.-+|.+++++|++.+.++++.||+|.=|++.+++.... + +.|. ..|.+++.++
T Consensus 135 ~~~~~~H~~s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~--keil~~avS~ 212 (479)
T KOG0299|consen 135 FRVIGKHQLSVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHV--KEILTLAVSS 212 (479)
T ss_pred ceeeccccCcceEEEeeccccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCccccccc--ceeEEEEEcC
Confidence 778889999999999999999999999999999999988764311 1 1444 4599999999
Q ss_pred cCCCCeEEEeecCCeEEEEeCCCCCCCCCCeeeeecceeeEEEeeeeeccccccccCCCCcceeeccCCceeeecCCCCC
Q 021291 73 SIGLNKVISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDS 152 (314)
Q Consensus 73 ~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (314)
|+++|++|+.|..|.||+.++.+.++ .+..+...+..
T Consensus 213 --Dgkylatgg~d~~v~Iw~~~t~ehv~--~~~ghr~~V~~--------------------------------------- 249 (479)
T KOG0299|consen 213 --DGKYLATGGRDRHVQIWDCDTLEHVK--VFKGHRGAVSS--------------------------------------- 249 (479)
T ss_pred --CCcEEEecCCCceEEEecCcccchhh--cccccccceee---------------------------------------
Confidence 99999999999999999999987655 22222222221
Q ss_pred CceeccCCCceEEEeecCcCeEEEEecCCCceeeeecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEeecCCc
Q 021291 153 KDDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGS 232 (314)
Q Consensus 153 ~~~~~~~~~~~~~~~g~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~ 232 (314)
++|-..-..++ +++.|++|++|++.....+.++- +|.+ .+.++.+.+- ++ .+.+|+.|++
T Consensus 250 -L~fr~gt~~ly--s~s~Drsvkvw~~~~~s~vetly--------GHqd----~v~~IdaL~r----eR-~vtVGgrDrT 309 (479)
T KOG0299|consen 250 -LAFRKGTSELY--SASADRSVKVWSIDQLSYVETLY--------GHQD----GVLGIDALSR----ER-CVTVGGRDRT 309 (479)
T ss_pred -eeeecCcccee--eeecCCceEEEehhHhHHHHHHh--------CCcc----ceeeechhcc----cc-eEEeccccce
Confidence 23333334444 56679999999999888888887 7854 5555553332 33 6777779999
Q ss_pred EEEEEccCCCCceEeeecCCcceEEEEEeCCCCeEEEecCCCcEEEEecCCCeeeEe
Q 021291 233 ILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTYVLF 289 (314)
Q Consensus 233 i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~iw~~~~~~~~~~ 289 (314)
+++|++. ......+.+|.+.+-+++|-.+. .++|||.||.|.+|++.+.+.++.
T Consensus 310 ~rlwKi~--eesqlifrg~~~sidcv~~In~~-HfvsGSdnG~IaLWs~~KKkplf~ 363 (479)
T KOG0299|consen 310 VRLWKIP--EESQLIFRGGEGSIDCVAFINDE-HFVSGSDNGSIALWSLLKKKPLFT 363 (479)
T ss_pred eEEEecc--ccceeeeeCCCCCeeeEEEeccc-ceeeccCCceEEEeeecccCceeE
Confidence 9999996 44455677899999999995444 589999999999999998888775
No 121
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.90 E-value=3.3e-21 Score=145.31 Aligned_cols=211 Identities=15% Similarity=0.155 Sum_probs=135.3
Q ss_pred EEEeccCCcccEEEEEEcccCCCCeEEEeecCCeEEEEeCCCCCCCCCCeeeeecceeeEEEeeeeeccccc-cccCCCC
Q 021291 54 SSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYAN-AKQANEP 132 (314)
Q Consensus 54 ~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 132 (314)
+.++... ..|.++.|++ +|..+++++.|.+|+|||..+++.++ .+..+........|.-....... ..-....
T Consensus 8 k~f~~~~--~~i~sl~fs~--~G~~litss~dDsl~LYd~~~g~~~~--ti~skkyG~~~~~Fth~~~~~i~sStk~d~t 81 (311)
T KOG1446|consen 8 KVFRETN--GKINSLDFSD--DGLLLITSSEDDSLRLYDSLSGKQVK--TINSKKYGVDLACFTHHSNTVIHSSTKEDDT 81 (311)
T ss_pred cccccCC--CceeEEEecC--CCCEEEEecCCCeEEEEEcCCCceee--EeecccccccEEEEecCCceEEEccCCCCCc
Confidence 3444444 4499999999 99999999999999999999998765 22222223332222221111111 1111223
Q ss_pred cceeeccCCceeeecCCCCCC----ceeccCCCceEEEeecCcCeEEEEecCCCceeeeecccccCCCCCcCCCCCceee
Q 021291 133 KDCYEREVGETVDTDSLCDSK----DDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCM 208 (314)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~g~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~ 208 (314)
.+...+... .....+.||.. ++.+|-++.++ +++.|++|++||++..++...+.. .+..
T Consensus 82 IryLsl~dN-kylRYF~GH~~~V~sL~~sP~~d~Fl--S~S~D~tvrLWDlR~~~cqg~l~~-------------~~~p- 144 (311)
T KOG1446|consen 82 IRYLSLHDN-KYLRYFPGHKKRVNSLSVSPKDDTFL--SSSLDKTVRLWDLRVKKCQGLLNL-------------SGRP- 144 (311)
T ss_pred eEEEEeecC-ceEEEcCCCCceEEEEEecCCCCeEE--ecccCCeEEeeEecCCCCceEEec-------------CCCc-
Confidence 333444433 45567889988 88899987655 788899999999998776555442 1111
Q ss_pred eEEEecCCCCCCceEEEEeecCCcEEEEEccCC----------------------------------------------C
Q 021291 209 AVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNP----------------------------------------------G 242 (314)
Q Consensus 209 ~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~----------------------------------------------~ 242 (314)
+++|.|. |. ++|++.....|++||+|.. |
T Consensus 145 -i~AfDp~---GL-ifA~~~~~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G 219 (311)
T KOG1446|consen 145 -IAAFDPE---GL-IFALANGSELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDG 219 (311)
T ss_pred -ceeECCC---Cc-EEEEecCCCeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCC
Confidence 1136665 33 5555555556666666542 3
Q ss_pred CceEeeecCCcc---eEEEEEeCCCCeEEEecCCCcEEEEecCCCeeeEeeee
Q 021291 243 IPLTAMKVHLEP---VLCLSIDESCNGGISGGADQKIVLYNLDHSTYVLFGIG 292 (314)
Q Consensus 243 ~~~~~~~~h~~~---v~~~~~~~~~~~l~s~s~dg~i~iw~~~~~~~~~~~~~ 292 (314)
..+.++..+... -....|.||++++++|+.||+|.+|+++++.++....+
T Consensus 220 ~~~~tfs~~~~~~~~~~~a~ftPds~Fvl~gs~dg~i~vw~~~tg~~v~~~~~ 272 (311)
T KOG1446|consen 220 TVKSTFSGYPNAGNLPLSATFTPDSKFVLSGSDDGTIHVWNLETGKKVAVLRG 272 (311)
T ss_pred cEeeeEeeccCCCCcceeEEECCCCcEEEEecCCCcEEEEEcCCCcEeeEecC
Confidence 344444444332 14667899999999999999999999999998877555
No 122
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.90 E-value=8.2e-23 Score=170.43 Aligned_cols=210 Identities=17% Similarity=0.288 Sum_probs=155.4
Q ss_pred CceeEEEEccCCCEEEEecCCCeEEEEeCCCC----eEEEEEeccCC-cccEEEEEEcccCCCCeEEEeecCCeEEEEeC
Q 021291 19 ASVTDVCFHQTKPILFAGTTGGELRIWDTVQH----RTVSSSWVHSA-AHGIVSVATGPSIGLNKVISQGRDGTVKCWDI 93 (314)
Q Consensus 19 ~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~----~~~~~~~~~~~-~~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd~ 93 (314)
....+++.+++-..++.++.. .++||.+... ++...++.... ...+..+.|.. .+.++|++++..|.|.+||+
T Consensus 40 ~~~nAIs~nr~~~qiv~AGrs-~lklyai~~~~~~~~~~~~~k~kqn~~~S~~DVkW~~-~~~NlIAT~s~nG~i~vWdl 117 (839)
T KOG0269|consen 40 AKANAISVNRDINQIVVAGRS-LLKLYAINPNDFSEKCNHRFKTKQNKFYSAADVKWGQ-LYSNLIATCSTNGVISVWDL 117 (839)
T ss_pred cccceEeecCCcceeEEeccc-ceeeEeeCcccCCcceeeecccccceeeehhhccccc-chhhhheeecCCCcEEEEec
Confidence 456778888888888888776 6888877643 22222211110 02356678874 36789999999999999999
Q ss_pred CCCCCCCCCeeeeecceeeEEEeeeeeccccccccCCCCcceeeccCCceeeecCCCCCCceeccCCCceEEEeecCcCe
Q 021291 94 ENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQLSE 173 (314)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~ 173 (314)
..... .+.+..+..+...... ++|++...++++ +|+.||+
T Consensus 118 nk~~r-nk~l~~f~EH~Rs~~~--------------------------------------ldfh~tep~ili-SGSQDg~ 157 (839)
T KOG0269|consen 118 NKSIR-NKLLTVFNEHERSANK--------------------------------------LDFHSTEPNILI-SGSQDGT 157 (839)
T ss_pred Ccccc-chhhhHhhhhccceee--------------------------------------eeeccCCccEEE-ecCCCce
Confidence 86311 1111122222222111 457777777766 8999999
Q ss_pred EEEEecCCCceeeeecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEeecCCcEEEEEccCCCCceEeeecCCc
Q 021291 174 VEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHLE 253 (314)
Q Consensus 174 i~vwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~h~~ 253 (314)
|++||++..+...++. +. ...+..+. |+|.. +. .++++.+.|.+++||+|.+.++...+.+|.+
T Consensus 158 vK~~DlR~~~S~~t~~--------~n----SESiRDV~-fsp~~--~~-~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~G 221 (839)
T KOG0269|consen 158 VKCWDLRSKKSKSTFR--------SN----SESIRDVK-FSPGY--GN-KFASIHDSGYLQLWDLRQPDRCEKKLTAHNG 221 (839)
T ss_pred EEEEeeeccccccccc--------cc----chhhhcee-eccCC--Cc-eEEEecCCceEEEeeccCchhHHHHhhcccC
Confidence 9999999888777776 33 33677777 99974 33 8999999999999999998999999999999
Q ss_pred ceEEEEEeCCCCeEEEecCCCcEEEEecCCCee
Q 021291 254 PVLCLSIDESCNGGISGGADQKIVLYNLDHSTY 286 (314)
Q Consensus 254 ~v~~~~~~~~~~~l~s~s~dg~i~iw~~~~~~~ 286 (314)
+|.++.|+|++.+|||||.|+.|+|||+..++.
T Consensus 222 pV~c~nwhPnr~~lATGGRDK~vkiWd~t~~~~ 254 (839)
T KOG0269|consen 222 PVLCLNWHPNREWLATGGRDKMVKIWDMTDSRA 254 (839)
T ss_pred ceEEEeecCCCceeeecCCCccEEEEeccCCCc
Confidence 999999999999999999999999999986543
No 123
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.90 E-value=5.8e-23 Score=178.20 Aligned_cols=231 Identities=19% Similarity=0.292 Sum_probs=169.0
Q ss_pred CCceeEEEEccCCCE----EEEecCCCeEEEEeCCC---C---eEEEEEeccCCcccEEEEEEcccCCCCeEEEeecCCe
Q 021291 18 RASVTDVCFHQTKPI----LFAGTTGGELRIWDTVQ---H---RTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGT 87 (314)
Q Consensus 18 ~~~v~~~~~~~~~~~----l~s~~~dg~v~iwd~~~---~---~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~ 87 (314)
...-+.++|.+.|.. ||.|..||.|.+||... + ..+.+...|.+. |..+.|++. .+++|++|+.||.
T Consensus 64 ~~rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~~~~~~~la~~~~h~G~--V~gLDfN~~-q~nlLASGa~~ge 140 (1049)
T KOG0307|consen 64 SNRFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIANASEEVLATKSKHTGP--VLGLDFNPF-QGNLLASGADDGE 140 (1049)
T ss_pred cccceeeeecccCCCccceeeccccCCceEEecchhhccCcchHHHhhhcccCCc--eeeeecccc-CCceeeccCCCCc
Confidence 345678999986654 89999999999999765 2 235566678755 999999995 4469999999999
Q ss_pred EEEEeCCCCCCCCCCeeeeecceeeEEEeeeeeccccccccCCCCcceeeccCCceeeecCCCCCCceeccCCCceEEEe
Q 021291 88 VKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVA 167 (314)
Q Consensus 88 v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (314)
|.|||++..+..- +............ ++|+..-.++|+ +
T Consensus 141 I~iWDlnn~~tP~----~~~~~~~~~eI~~------------------------------------lsWNrkvqhILA-S 179 (1049)
T KOG0307|consen 141 ILIWDLNKPETPF----TPGSQAPPSEIKC------------------------------------LSWNRKVSHILA-S 179 (1049)
T ss_pred EEEeccCCcCCCC----CCCCCCCcccceE------------------------------------eccchhhhHHhh-c
Confidence 9999998754321 1110000000000 557777777776 5
Q ss_pred ecCcCeEEEEecCCCceeeeecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEeecCC---cEEEEEccCCCCc
Q 021291 168 GEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDG---SILVWDIRNPGIP 244 (314)
Q Consensus 168 g~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg---~i~vwd~~~~~~~ 244 (314)
++.+|.+.|||++..+.+..+. .+.. +..+..+. |+|+.. . .+++++.|. .|.+||+|....+
T Consensus 180 ~s~sg~~~iWDlr~~~pii~ls--------~~~~--~~~~S~l~-WhP~~a-T--ql~~As~dd~~PviqlWDlR~assP 245 (1049)
T KOG0307|consen 180 GSPSGRAVIWDLRKKKPIIKLS--------DTPG--RMHCSVLA-WHPDHA-T--QLLVASGDDSAPVIQLWDLRFASSP 245 (1049)
T ss_pred cCCCCCceeccccCCCcccccc--------cCCC--ccceeeee-eCCCCc-e--eeeeecCCCCCceeEeecccccCCc
Confidence 6668999999999988877776 3322 24566776 999954 2 455555443 5999999988899
Q ss_pred eEeeecCCcceEEEEEeCCC-CeEEEecCCCcEEEEecCCCeeeEeeeeeeecCCCceeceeecccc
Q 021291 245 LTAMKVHLEPVLCLSIDESC-NGGISGGADQKIVLYNLDHSTYVLFGIGFVCDQEGNKFGTTWHIRH 310 (314)
Q Consensus 245 ~~~~~~h~~~v~~~~~~~~~-~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~ 310 (314)
++++++|...|.+|.|++.. .+|+|++.|+.|.+|+.++++.+..+.. ...=.|...|+.|.
T Consensus 246 ~k~~~~H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~tgEvl~~~p~----~~nW~fdv~w~pr~ 308 (1049)
T KOG0307|consen 246 LKILEGHQRGILSLSWCPQDPRLLLSSGKDNRIICWNPNTGEVLGELPA----QGNWCFDVQWCPRN 308 (1049)
T ss_pred hhhhcccccceeeeccCCCCchhhhcccCCCCeeEecCCCceEeeecCC----CCcceeeeeecCCC
Confidence 99999999999999997655 7899999999999999999998876422 23335566666553
No 124
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.90 E-value=4.3e-22 Score=156.26 Aligned_cols=211 Identities=15% Similarity=0.224 Sum_probs=156.1
Q ss_pred ecCCCCceeEEEEcc-CCCEEEEecCCCeEEEEeCCCCeEEEEEeccCCcccEEEEEEcccCCCCeEEEeecCCeEEEEe
Q 021291 14 LRGHRASVTDVCFHQ-TKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWD 92 (314)
Q Consensus 14 l~~h~~~v~~~~~~~-~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd 92 (314)
-.+|++.|.+++|+. -.+.||+||.|.+|++||+.++++..++..|... |.++.|+|. ....|++|+.|++|.+.|
T Consensus 239 ~~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~lWD~~~g~p~~s~~~~~k~--Vq~l~wh~~-~p~~LLsGs~D~~V~l~D 315 (463)
T KOG0270|consen 239 ASGHTDAVLALSWNRNFRNVLASGSADKTVKLWDVDTGKPKSSITHHGKK--VQTLEWHPY-EPSVLLSGSYDGTVALKD 315 (463)
T ss_pred cccchHHHHHHHhccccceeEEecCCCceEEEEEcCCCCcceehhhcCCc--eeEEEecCC-CceEEEeccccceEEeee
Confidence 347999999999998 4568999999999999999999999999988855 999999996 568999999999999999
Q ss_pred CCCCCCCCCCeeeeecceeeEEEeeeeeccccccccCCCCcceeeccCCceeeecCCCCCCceeccCCCceEEEeecCcC
Q 021291 93 IENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQLS 172 (314)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~ 172 (314)
.+....... .+.+...-.. ++|.|.....++ ++..||
T Consensus 316 ~R~~~~s~~-~wk~~g~VEk-----------------------------------------v~w~~~se~~f~-~~tddG 352 (463)
T KOG0270|consen 316 CRDPSNSGK-EWKFDGEVEK-----------------------------------------VAWDPHSENSFF-VSTDDG 352 (463)
T ss_pred ccCccccCc-eEEeccceEE-----------------------------------------EEecCCCceeEE-EecCCc
Confidence 995322110 1111111000 568887776665 577899
Q ss_pred eEEEEecCCC-ceeeeecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEeecCCcEEEEEccCCCCceEeeecC
Q 021291 173 EVEIWDLNTA-ERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVH 251 (314)
Q Consensus 173 ~i~vwd~~~~-~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~h 251 (314)
+|+-+|+|.. +++.++. +|.. .+.++. +++.-+ + ++++++.|+.|++|++.. ..+. ....|
T Consensus 353 ~v~~~D~R~~~~~vwt~~--------AHd~----~ISgl~-~n~~~p-~--~l~t~s~d~~Vklw~~~~-~~~~-~v~~~ 414 (463)
T KOG0270|consen 353 TVYYFDIRNPGKPVWTLK--------AHDD----EISGLS-VNIQTP-G--LLSTASTDKVVKLWKFDV-DSPK-SVKEH 414 (463)
T ss_pred eEEeeecCCCCCceeEEE--------eccC----CcceEE-ecCCCC-c--ceeeccccceEEEEeecC-CCCc-ccccc
Confidence 9999999976 7888888 7855 455554 665533 2 899999999999999975 3321 11122
Q ss_pred C---cceEEEEEeCCCC-eEEEecCCCcEEEEecCCCeeeE
Q 021291 252 L---EPVLCLSIDESCN-GGISGGADQKIVLYNLDHSTYVL 288 (314)
Q Consensus 252 ~---~~v~~~~~~~~~~-~l~s~s~dg~i~iw~~~~~~~~~ 288 (314)
. +...|.+++|+-. .++.|+..+.++|||+.+...+.
T Consensus 415 ~~~~~rl~c~~~~~~~a~~la~GG~k~~~~vwd~~~~~~V~ 455 (463)
T KOG0270|consen 415 SFKLGRLHCFALDPDVAFTLAFGGEKAVLRVWDIFTNSPVR 455 (463)
T ss_pred cccccceeecccCCCcceEEEecCccceEEEeecccChhHH
Confidence 2 2355666777654 46788888889999998776543
No 125
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.90 E-value=3.9e-22 Score=156.50 Aligned_cols=201 Identities=21% Similarity=0.300 Sum_probs=148.8
Q ss_pred eEEEEcc-------CCCEEEEecCCCeEEEEeCCCCeE---EE------------------EEeccCCcccEEEEEEccc
Q 021291 22 TDVCFHQ-------TKPILFAGTTGGELRIWDTVQHRT---VS------------------SSWVHSAAHGIVSVATGPS 73 (314)
Q Consensus 22 ~~~~~~~-------~~~~l~s~~~dg~v~iwd~~~~~~---~~------------------~~~~~~~~~~v~~~~~~~~ 73 (314)
.|++|.. -|+++|.|+.|..|.|||+.-... .. ...+|+ +.|..|+|+..
T Consensus 177 LC~ewld~~~~~~~~gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHT--davl~Ls~n~~ 254 (463)
T KOG0270|consen 177 LCIEWLDHGSKSGGAGNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHT--DAVLALSWNRN 254 (463)
T ss_pred hhhhhhhcCCCCCCCcceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccch--HHHHHHHhccc
Confidence 4666643 367999999999999999763110 00 112465 44889999873
Q ss_pred CCCCeEEEeecCCeEEEEeCCCCCCCCCCeeeeecceeeEEEeeeeeccccccccCCCCcceeeccCCceeeecCCCCCC
Q 021291 74 IGLNKVISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSK 153 (314)
Q Consensus 74 ~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (314)
-.+.|++||.|.+|++||+.++++.. .++.+......
T Consensus 255 -~~nVLaSgsaD~TV~lWD~~~g~p~~--s~~~~~k~Vq~---------------------------------------- 291 (463)
T KOG0270|consen 255 -FRNVLASGSADKTVKLWDVDTGKPKS--SITHHGKKVQT---------------------------------------- 291 (463)
T ss_pred -cceeEEecCCCceEEEEEcCCCCcce--ehhhcCCceeE----------------------------------------
Confidence 34789999999999999999998754 33333333322
Q ss_pred ceeccCCCceEEEeecCcCeEEEEecCCCce-eeeecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEeecCCc
Q 021291 154 DDVPAEGPKYMAVAGEQLSEVEIWDLNTAER-CTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGS 232 (314)
Q Consensus 154 ~~~~~~~~~~~~~~g~~d~~i~vwd~~~~~~-~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~ 232 (314)
+.|+|....+++ +|+.|++|.+.|.|.... -..++ ..+-+-.++ |.|... ..++++..||.
T Consensus 292 l~wh~~~p~~LL-sGs~D~~V~l~D~R~~~~s~~~wk-------------~~g~VEkv~-w~~~se---~~f~~~tddG~ 353 (463)
T KOG0270|consen 292 LEWHPYEPSVLL-SGSYDGTVALKDCRDPSNSGKEWK-------------FDGEVEKVA-WDPHSE---NSFFVSTDDGT 353 (463)
T ss_pred EEecCCCceEEE-eccccceEEeeeccCccccCceEE-------------eccceEEEE-ecCCCc---eeEEEecCCce
Confidence 457777766665 799999999999995322 12222 234566666 888743 38999999999
Q ss_pred EEEEEccCCCCceEeeecCCcceEEEEEeCCC-CeEEEecCCCcEEEEecCCCe
Q 021291 233 ILVWDIRNPGIPLTAMKVHLEPVLCLSIDESC-NGGISGGADQKIVLYNLDHST 285 (314)
Q Consensus 233 i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~~-~~l~s~s~dg~i~iw~~~~~~ 285 (314)
|+-+|+|++++++.++++|.++|.+|++++.- .+++|+|.|+.|++|++....
T Consensus 354 v~~~D~R~~~~~vwt~~AHd~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~~ 407 (463)
T KOG0270|consen 354 VYYFDIRNPGKPVWTLKAHDDEISGLSVNIQTPGLLSTASTDKVVKLWKFDVDS 407 (463)
T ss_pred EEeeecCCCCCceeEEEeccCCcceEEecCCCCcceeeccccceEEEEeecCCC
Confidence 99999999899999999999999999996543 368999999999999986443
No 126
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.89 E-value=1.4e-21 Score=154.08 Aligned_cols=257 Identities=19% Similarity=0.243 Sum_probs=177.8
Q ss_pred eEEecCCCCceeEEEEccCC--CEEEEecCCCeEEEEeCCCC----eEEEEEeccCCcccEEEEEEcccCCCCeEEEeec
Q 021291 11 VAVLRGHRASVTDVCFHQTK--PILFAGTTGGELRIWDTVQH----RTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGR 84 (314)
Q Consensus 11 ~~~l~~h~~~v~~~~~~~~~--~~l~s~~~dg~v~iwd~~~~----~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~ 84 (314)
..+.+-|.+.|++++|+|.. +++|+|..-|+|-+||+.+. .-+..+..|. .+|.+|.|+|. +...+++.|.
T Consensus 179 ~~v~kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs--~~Vs~l~F~P~-n~s~i~ssSy 255 (498)
T KOG4328|consen 179 LNVAKVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHS--GPVSGLKFSPA-NTSQIYSSSY 255 (498)
T ss_pred cceeEecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCC--ccccceEecCC-Chhheeeecc
Confidence 44566789999999999943 68899999999999999532 2344555666 55999999996 4478999999
Q ss_pred CCeEEEEeCCCCCCCCCCeeeeecceeeEEEeeeeeccccc-cccCCCCcceeeccCCceeeecCCCCCC----ceeccC
Q 021291 85 DGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYAN-AKQANEPKDCYEREVGETVDTDSLCDSK----DDVPAE 159 (314)
Q Consensus 85 dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~ 159 (314)
||+|++-|++...... ++........++.+.+....... ....-+....++.+....-...+.-|.. ++++|.
T Consensus 256 DGtiR~~D~~~~i~e~--v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~kKI~sv~~NP~ 333 (498)
T KOG4328|consen 256 DGTIRLQDFEGNISEE--VLSLDTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEYENLRLHKKKITSVALNPV 333 (498)
T ss_pred CceeeeeeecchhhHH--HhhcCccceeeeeccccCCCccEEEeecccceEEEEeecCCccchhhhhhhcccceeecCCC
Confidence 9999999999875432 44554344444433333222211 1222235567777766654444444444 899999
Q ss_pred CCceEEEeecCcCeEEEEecCCCceeee-ecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEeecCCcEEEEEc
Q 021291 160 GPKYMAVAGEQLSEVEIWDLNTAERCTR-LHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDI 238 (314)
Q Consensus 160 ~~~~~~~~g~~d~~i~vwd~~~~~~~~~-~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~ 238 (314)
...+++ +++.|++++|||++....... + -+.-+++..+.+.. |+|. +. .|++.+.|..|+|||.
T Consensus 334 ~p~~la-T~s~D~T~kIWD~R~l~~K~sp~---------lst~~HrrsV~sAy-FSPs---~g-tl~TT~~D~~IRv~ds 398 (498)
T KOG4328|consen 334 CPWFLA-TASLDQTAKIWDLRQLRGKASPF---------LSTLPHRRSVNSAY-FSPS---GG-TLLTTCQDNEIRVFDS 398 (498)
T ss_pred Cchhee-ecccCcceeeeehhhhcCCCCcc---------eecccccceeeeeE-EcCC---CC-ceEeeccCCceEEeec
Confidence 988887 677799999999996543332 1 11122355677776 9998 33 5999999999999998
Q ss_pred c---CCCCceEeeecCC----cc--eEEEEEeCCCCeEEEecCCCcEEEEecCCCeeeE
Q 021291 239 R---NPGIPLTAMKVHL----EP--VLCLSIDESCNGGISGGADQKIVLYNLDHSTYVL 288 (314)
Q Consensus 239 ~---~~~~~~~~~~~h~----~~--v~~~~~~~~~~~l~s~s~dg~i~iw~~~~~~~~~ 288 (314)
. ....+...+. |. .. .....|+|+..++++|-.-..|-|+|-..++.+.
T Consensus 399 s~~sa~~~p~~~I~-Hn~~t~RwlT~fKA~W~P~~~li~vg~~~r~IDv~~~~~~q~v~ 456 (498)
T KOG4328|consen 399 SCISAKDEPLGTIP-HNNRTGRWLTPFKAAWDPDYNLIVVGRYPRPIDVFDGNGGQMVC 456 (498)
T ss_pred ccccccCCccceee-ccCcccccccchhheeCCCccEEEEeccCcceeEEcCCCCEEee
Confidence 4 2134444443 32 22 3456799999999999999999999988877443
No 127
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.89 E-value=6.8e-21 Score=156.21 Aligned_cols=250 Identities=15% Similarity=0.192 Sum_probs=181.7
Q ss_pred EEEccCCCEEEEecCCCeEEEEeCCCCeEEEEEeccCCcccEEEEEEcccCCCCeEEEeecCCeEEEEeCCCCCCCCCCe
Q 021291 24 VCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGGLSSNPS 103 (314)
Q Consensus 24 ~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~ 103 (314)
+.|+. .+.||.|... .|.+|+..+++.......+. ..|+++.|++ +|.+|+.|..+|.|.|||..+.+.+. .
T Consensus 183 ldWss-~n~laValg~-~vylW~~~s~~v~~l~~~~~--~~vtSv~ws~--~G~~LavG~~~g~v~iwD~~~~k~~~--~ 254 (484)
T KOG0305|consen 183 LDWSS-ANVLAVALGQ-SVYLWSASSGSVTELCSFGE--ELVTSVKWSP--DGSHLAVGTSDGTVQIWDVKEQKKTR--T 254 (484)
T ss_pred hhccc-CCeEEEEecc-eEEEEecCCCceEEeEecCC--CceEEEEECC--CCCEEEEeecCCeEEEEehhhccccc--c
Confidence 67774 4467766544 69999999988666555555 5599999999 99999999999999999998877654 2
Q ss_pred eee-ecceeeEEEeeeeeccccccccCCCCcceeeccCCceeeecCCCCCC----ceeccCCCceEEEeecCcCeEEEEe
Q 021291 104 LTI-KTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSK----DDVPAEGPKYMAVAGEQLSEVEIWD 178 (314)
Q Consensus 104 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~g~~d~~i~vwd 178 (314)
+.. +........+. ..........+....++++........+.+|.. +.|++++.++. +|+.|+.+.|||
T Consensus 255 ~~~~h~~rvg~laW~---~~~lssGsr~~~I~~~dvR~~~~~~~~~~~H~qeVCgLkws~d~~~lA--SGgnDN~~~Iwd 329 (484)
T KOG0305|consen 255 LRGSHASRVGSLAWN---SSVLSSGSRDGKILNHDVRISQHVVSTLQGHRQEVCGLKWSPDGNQLA--SGGNDNVVFIWD 329 (484)
T ss_pred ccCCcCceeEEEecc---CceEEEecCCCcEEEEEEecchhhhhhhhcccceeeeeEECCCCCeec--cCCCccceEecc
Confidence 222 22222222222 222233334445555667666655556777777 99999997543 788899999999
Q ss_pred cCCCceeeeecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEe--ecCCcEEEEEccCCCCceEeeecCCcceE
Q 021291 179 LNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAG--YEDGSILVWDIRNPGIPLTAMKVHLEPVL 256 (314)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g--~~dg~i~vwd~~~~~~~~~~~~~h~~~v~ 256 (314)
....+++..+. .| .+.+-+++ |+|-.. | +||+| +.|+.|++||..+ +..+..+.. ...|.
T Consensus 330 ~~~~~p~~~~~--------~H----~aAVKA~a-wcP~q~-~--lLAsGGGs~D~~i~fwn~~~-g~~i~~vdt-gsQVc 391 (484)
T KOG0305|consen 330 GLSPEPKFTFT--------EH----TAAVKALA-WCPWQS-G--LLATGGGSADRCIKFWNTNT-GARIDSVDT-GSQVC 391 (484)
T ss_pred CCCccccEEEe--------cc----ceeeeEee-eCCCcc-C--ceEEcCCCcccEEEEEEcCC-CcEeccccc-CCcee
Confidence 98888888887 56 55777887 999854 3 77775 5799999999998 888877764 67999
Q ss_pred EEEEeCCCCeEEEec--CCCcEEEEecCCCeeeEe-------eeeeeecCCCceece
Q 021291 257 CLSIDESCNGGISGG--ADQKIVLYNLDHSTYVLF-------GIGFVCDQEGNKFGT 304 (314)
Q Consensus 257 ~~~~~~~~~~l~s~s--~dg~i~iw~~~~~~~~~~-------~~~~~~~~~~~~~~~ 304 (314)
+|.|++..+-|+++- .++.|.||++.+-+.+.. ...++.+|+|..+++
T Consensus 392 sL~Wsk~~kEi~sthG~s~n~i~lw~~ps~~~~~~l~gH~~RVl~la~SPdg~~i~t 448 (484)
T KOG0305|consen 392 SLIWSKKYKELLSTHGYSENQITLWKYPSMKLVAELLGHTSRVLYLALSPDGETIVT 448 (484)
T ss_pred eEEEcCCCCEEEEecCCCCCcEEEEeccccceeeeecCCcceeEEEEECCCCCEEEE
Confidence 999999886665543 467899999988776654 344567788766554
No 128
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.89 E-value=4.2e-21 Score=144.21 Aligned_cols=228 Identities=16% Similarity=0.167 Sum_probs=163.5
Q ss_pred CCCCceeEEEEccCCCEEEEecCCCeEEEEeCCCCeEEEEEeccCCcccEEEEEEcccCCCCeEEEeecCCeEEEEeCCC
Q 021291 16 GHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIEN 95 (314)
Q Consensus 16 ~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~ 95 (314)
.|..++.+++|.+ ...+++|+.||.|+++|+.++.... +..|. .+|.||.+++ ....+++||+|++|++||.++
T Consensus 52 ~~~~plL~c~F~d-~~~~~~G~~dg~vr~~Dln~~~~~~-igth~--~~i~ci~~~~--~~~~vIsgsWD~~ik~wD~R~ 125 (323)
T KOG1036|consen 52 KHGAPLLDCAFAD-ESTIVTGGLDGQVRRYDLNTGNEDQ-IGTHD--EGIRCIEYSY--EVGCVISGSWDKTIKFWDPRN 125 (323)
T ss_pred ecCCceeeeeccC-CceEEEeccCceEEEEEecCCccee-eccCC--CceEEEEeec--cCCeEEEcccCccEEEEeccc
Confidence 4899999999997 4578999999999999999876653 45576 5599999998 778999999999999999997
Q ss_pred CCCCCCCeeeeecceeeEEEeeeee-ccccccccCCCCcceeeccCCceeeecCCCCCC-----ceeccCCCceEEEeec
Q 021291 96 GGLSSNPSLTIKTNSYHFCKLSLVK-EPYANAKQANEPKDCYEREVGETVDTDSLCDSK-----DDVPAEGPKYMAVAGE 169 (314)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~g~ 169 (314)
..... ...... ..+.... .........+..+.+|+++.........+..-. +++-|++..++ .++
T Consensus 126 ~~~~~----~~d~~k---kVy~~~v~g~~LvVg~~~r~v~iyDLRn~~~~~q~reS~lkyqtR~v~~~pn~eGy~--~sS 196 (323)
T KOG1036|consen 126 KVVVG----TFDQGK---KVYCMDVSGNRLVVGTSDRKVLIYDLRNLDEPFQRRESSLKYQTRCVALVPNGEGYV--VSS 196 (323)
T ss_pred ccccc----ccccCc---eEEEEeccCCEEEEeecCceEEEEEcccccchhhhccccceeEEEEEEEecCCCceE--EEe
Confidence 43322 222222 1222222 223333455667778888776654432222211 77778777665 466
Q ss_pred CcCeEEEEecCCC----ceeeeecccccCCCCCcCCCC-----CceeeeEEEecCCCCCCceEEEEeecCCcEEEEEccC
Q 021291 170 QLSEVEIWDLNTA----ERCTRLHQNSCGGSPNFSSKG-----RGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRN 240 (314)
Q Consensus 170 ~d~~i~vwd~~~~----~~~~~~~~~~~~~~~~h~~~~-----~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~ 240 (314)
-||.|.+=.+... +....|+ .|.... --++.++. |+|-.. .|++|+.||.|.+||+.+
T Consensus 197 ieGRVavE~~d~s~~~~skkyaFk--------CHr~~~~~~~~~yPVNai~-Fhp~~~----tfaTgGsDG~V~~Wd~~~ 263 (323)
T KOG1036|consen 197 IEGRVAVEYFDDSEEAQSKKYAFK--------CHRLSEKDTEIIYPVNAIA-FHPIHG----TFATGGSDGIVNIWDLFN 263 (323)
T ss_pred ecceEEEEccCCchHHhhhceeEE--------eeecccCCceEEEEeceeE-eccccc----eEEecCCCceEEEccCcc
Confidence 7899888666544 3334444 343222 22577787 999732 799999999999999998
Q ss_pred CCCceEeeecCCcceEEEEEeCCCCeEEEecC
Q 021291 241 PGIPLTAMKVHLEPVLCLSIDESCNGGISGGA 272 (314)
Q Consensus 241 ~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~ 272 (314)
.+.+..+......|.+++|+.+|..||.++.
T Consensus 264 -rKrl~q~~~~~~SI~slsfs~dG~~LAia~s 294 (323)
T KOG1036|consen 264 -RKRLKQLAKYETSISSLSFSMDGSLLAIASS 294 (323)
T ss_pred -hhhhhhccCCCCceEEEEeccCCCeEEEEec
Confidence 8888888887788999999999999999874
No 129
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.89 E-value=7.4e-22 Score=155.34 Aligned_cols=214 Identities=14% Similarity=0.210 Sum_probs=168.1
Q ss_pred CCceEEecCCCCceeEEEEcc-CCCEEEEecCCCeEEEEeCCCCe-------EEEEEeccCCcccEEEEEEcccCCCCeE
Q 021291 8 PDPVAVLRGHRASVTDVCFHQ-TKPILFAGTTGGELRIWDTVQHR-------TVSSSWVHSAAHGIVSVATGPSIGLNKV 79 (314)
Q Consensus 8 ~~~~~~l~~h~~~v~~~~~~~-~~~~l~s~~~dg~v~iwd~~~~~-------~~~~~~~~~~~~~v~~~~~~~~~~~~~l 79 (314)
.+|-.+|+||.+.-..++|++ ..-.|++++.|++|++||+.... ....+.+|. +.|..++|++. +..+|
T Consensus 167 ~~Pdl~L~gH~~eg~glsWn~~~~g~Lls~~~d~~i~lwdi~~~~~~~~~~~p~~~~~~h~--~~VeDV~~h~~-h~~lF 243 (422)
T KOG0264|consen 167 CRPDLRLKGHEKEGYGLSWNRQQEGTLLSGSDDHTICLWDINAESKEDKVVDPKTIFSGHE--DVVEDVAWHPL-HEDLF 243 (422)
T ss_pred CCCceEEEeecccccccccccccceeEeeccCCCcEEEEeccccccCCccccceEEeecCC--cceehhhcccc-chhhh
Confidence 356668999999999999999 44589999999999999987432 345677888 45999999996 45789
Q ss_pred EEeecCCeEEEEeCCCCCCCCCCeeeeecceeeEEEeeeeeccccccccCCCCcceeeccCCceeeecCCCCCC----ce
Q 021291 80 ISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSK----DD 155 (314)
Q Consensus 80 ~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~ 155 (314)
++++.|+.+.|||++++..........+......+.|++................+|+++........+.+|.+ +.
T Consensus 244 ~sv~dd~~L~iwD~R~~~~~~~~~~~ah~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~dev~~V~ 323 (422)
T KOG0264|consen 244 GSVGDDGKLMIWDTRSNTSKPSHSVKAHSAEVNCVAFNPFNEFILATGSADKTVALWDLRNLNKPLHTFEGHEDEVFQVE 323 (422)
T ss_pred eeecCCCeEEEEEcCCCCCCCcccccccCCceeEEEeCCCCCceEEeccCCCcEEEeechhcccCceeccCCCcceEEEE
Confidence 99999999999999964222222344556677788888888777777888889999999999988889999988 99
Q ss_pred eccCCCceEEEeecCcCeEEEEecCCCceeee------------ecccccCCCCCcCCCCCceeeeEEEecCCCCCCceE
Q 021291 156 VPAEGPKYMAVAGEQLSEVEIWDLNTAERCTR------------LHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVN 223 (314)
Q Consensus 156 ~~~~~~~~~~~~g~~d~~i~vwd~~~~~~~~~------------~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~ 223 (314)
|+|..+.+++++| .|+.+.+||+..-...+. |.. .|| +..+.... |+|+++ ..
T Consensus 324 WSPh~etvLASSg-~D~rl~vWDls~ig~eq~~eda~dgppEllF~H------gGH----~~kV~Dfs-Wnp~eP---W~ 388 (422)
T KOG0264|consen 324 WSPHNETVLASSG-TDRRLNVWDLSRIGEEQSPEDAEDGPPELLFIH------GGH----TAKVSDFS-WNPNEP---WT 388 (422)
T ss_pred eCCCCCceeEecc-cCCcEEEEeccccccccChhhhccCCcceeEEe------cCc----cccccccc-CCCCCC---eE
Confidence 9999999998666 599999999874322211 111 155 55677776 999865 38
Q ss_pred EEEeecCCcEEEEEcc
Q 021291 224 VLAGYEDGSILVWDIR 239 (314)
Q Consensus 224 l~~g~~dg~i~vwd~~ 239 (314)
|++.++|+.+.||...
T Consensus 389 I~SvaeDN~LqIW~~s 404 (422)
T KOG0264|consen 389 IASVAEDNILQIWQMA 404 (422)
T ss_pred EEEecCCceEEEeecc
Confidence 8999999999999986
No 130
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.89 E-value=7.3e-22 Score=159.40 Aligned_cols=233 Identities=21% Similarity=0.348 Sum_probs=170.6
Q ss_pred eEEecCCCCceeEEEEccCCCEEEEecCCCeEEEEeCCC--------CeEEEEEeccCCcccEEEEEEcccCCCCeEEEe
Q 021291 11 VAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQ--------HRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQ 82 (314)
Q Consensus 11 ~~~l~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~--------~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~ 82 (314)
-.+++.|.+.|+.++|.|....|++++.||.+++|++++ -+.+.+|++|.++ |.|+++.+ ++..+++|
T Consensus 287 k~tl~s~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gP--Vl~v~v~~--n~~~~ysg 362 (577)
T KOG0642|consen 287 KFTLRSHDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGP--VLCVVVPS--NGEHCYSG 362 (577)
T ss_pred eeeeecchhhhhhhhcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCc--eEEEEecC--CceEEEee
Confidence 347889999999999999888999999999999999932 2578899999955 99999999 99999999
Q ss_pred ecCCeEEEEeCCCCCCCCCCeeeeecceeeEEEeeeeeccccccccCCCCcceeeccCCceeeecCCCCCC----ceecc
Q 021291 83 GRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSK----DDVPA 158 (314)
Q Consensus 83 ~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~ 158 (314)
+.||+|+.|++....- ..... ....+...+.||.+ ++++.
T Consensus 363 g~Dg~I~~w~~p~n~d------p~ds~------------------------------dp~vl~~~l~Ghtdavw~l~~s~ 406 (577)
T KOG0642|consen 363 GIDGTIRCWNLPPNQD------PDDSY------------------------------DPSVLSGTLLGHTDAVWLLALSS 406 (577)
T ss_pred ccCceeeeeccCCCCC------ccccc------------------------------Ccchhccceeccccceeeeeecc
Confidence 9999999998863211 00000 00112223445544 56777
Q ss_pred CCCceEEEeecCcCeEEEEecCCCceeeeecccccCCC----------CCcC----------------------------
Q 021291 159 EGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGS----------PNFS---------------------------- 200 (314)
Q Consensus 159 ~~~~~~~~~g~~d~~i~vwd~~~~~~~~~~~~~~~~~~----------~~h~---------------------------- 200 (314)
...+++ +++.||++++|+.....+ .+|..++.... ..|.
T Consensus 407 ~~~~Ll--scs~DgTvr~w~~~~~~~-~~f~~~~e~g~Plsvd~~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~ 483 (577)
T KOG0642|consen 407 TKDRLL--SCSSDGTVRLWEPTEESP-CTFGEPKEHGYPLSVDRTSSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSAS 483 (577)
T ss_pred ccccee--eecCCceEEeeccCCcCc-cccCCccccCCcceEeeccchhHhhhhhcccccccchhhhhhhheeeccccCC
Confidence 766655 566799999999875544 22221110000 0000
Q ss_pred -C-CCCceeeeEEEecCCCCCCceEEEEeecCCcEEEEEccCCCCceEeeecCCcceEEEEEeCCCCeEEEecCCCcEEE
Q 021291 201 -S-KGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVL 278 (314)
Q Consensus 201 -~-~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~i 278 (314)
. .....+..+. ++|..+ +.+++.+|+.|+++|..+ +.++....+|...++++++.|+|.+|++++.|+.+++
T Consensus 484 ~~~~~~~~in~vV-s~~~~~----~~~~~hed~~Ir~~dn~~-~~~l~s~~a~~~svtslai~~ng~~l~s~s~d~sv~l 557 (577)
T KOG0642|consen 484 PGPRRYPQINKVV-SHPTAD----ITFTAHEDRSIRFFDNKT-GKILHSMVAHKDSVTSLAIDPNGPYLMSGSHDGSVRL 557 (577)
T ss_pred CcccccCccceEE-ecCCCC----eeEecccCCceecccccc-cccchheeeccceecceeecCCCceEEeecCCceeeh
Confidence 0 0112233444 666632 899999999999999998 9999999999999999999999999999999999999
Q ss_pred EecCCCeeeEeeee
Q 021291 279 YNLDHSTYVLFGIG 292 (314)
Q Consensus 279 w~~~~~~~~~~~~~ 292 (314)
|.++...++.-...
T Consensus 558 ~kld~k~~~~es~~ 571 (577)
T KOG0642|consen 558 WKLDVKTCVLESTA 571 (577)
T ss_pred hhccchheeecccc
Confidence 99988877655443
No 131
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.89 E-value=1.5e-21 Score=150.46 Aligned_cols=213 Identities=16% Similarity=0.291 Sum_probs=153.0
Q ss_pred CCCCceEEecCCCCceeEEEEcc-CCCEEEEecCCCeEEEEeCCCCeEE---EEEeccCCcccEEEEEEcccCCCCeEEE
Q 021291 6 PPPDPVAVLRGHRASVTDVCFHQ-TKPILFAGTTGGELRIWDTVQHRTV---SSSWVHSAAHGIVSVATGPSIGLNKVIS 81 (314)
Q Consensus 6 ~~~~~~~~l~~h~~~v~~~~~~~-~~~~l~s~~~dg~v~iwd~~~~~~~---~~~~~~~~~~~v~~~~~~~~~~~~~l~s 81 (314)
...+|+.++.+|...=.+++||| ....|+||.--+.|++|...++... ..+.+|. ..|..|+|+|. ....|++
T Consensus 199 s~~~Pl~t~~ghk~EGy~LdWSp~~~g~LlsGDc~~~I~lw~~~~g~W~vd~~Pf~gH~--~SVEDLqWSpt-E~~vfaS 275 (440)
T KOG0302|consen 199 SEFRPLFTFNGHKGEGYGLDWSPIKTGRLLSGDCVKGIHLWEPSTGSWKVDQRPFTGHT--KSVEDLQWSPT-EDGVFAS 275 (440)
T ss_pred cccCceEEecccCccceeeecccccccccccCccccceEeeeeccCceeecCccccccc--cchhhhccCCc-cCceEEe
Confidence 44579999999999999999999 2336888888889999998887543 3355677 45999999996 4479999
Q ss_pred eecCCeEEEEeCCCCCCCCCCeeeeecceeeEEEeeeeeccccccccCCCCcceeeccCCceeeecCCCCCCceeccCCC
Q 021291 82 QGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGP 161 (314)
Q Consensus 82 ~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (314)
||.||+|+|||++.+.... .+..+.+...... ++|+....
T Consensus 276 cS~DgsIrIWDiRs~~~~~--~~~~kAh~sDVNV--------------------------------------ISWnr~~~ 315 (440)
T KOG0302|consen 276 CSCDGSIRIWDIRSGPKKA--AVSTKAHNSDVNV--------------------------------------ISWNRREP 315 (440)
T ss_pred eecCceEEEEEecCCCccc--eeEeeccCCceee--------------------------------------EEccCCcc
Confidence 9999999999999885322 2222222221111 44665554
Q ss_pred ceEEEeecCcCeEEEEecCC---CceeeeecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEeecCCcEEEEEc
Q 021291 162 KYMAVAGEQLSEVEIWDLNT---AERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDI 238 (314)
Q Consensus 162 ~~~~~~g~~d~~i~vwd~~~---~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~ 238 (314)
++++|+.||+++|||+|+ ++++..|+ -| +.+|+++. |+|.+.. .|++++.|.+|.+||+
T Consensus 316 --lLasG~DdGt~~iwDLR~~~~~~pVA~fk--------~H----k~pItsie-W~p~e~s---~iaasg~D~QitiWDl 377 (440)
T KOG0302|consen 316 --LLASGGDDGTLSIWDLRQFKSGQPVATFK--------YH----KAPITSIE-WHPHEDS---VIAASGEDNQITIWDL 377 (440)
T ss_pred --eeeecCCCceEEEEEhhhccCCCcceeEE--------ec----cCCeeEEE-eccccCc---eEEeccCCCcEEEEEe
Confidence 445888899999999985 44667777 45 67899998 9998542 8999999999999998
Q ss_pred cCCCC---------------ceEeeecC--CcceEEEEEeCCCC-eEEEecCCCcEEEEe
Q 021291 239 RNPGI---------------PLTAMKVH--LEPVLCLSIDESCN-GGISGGADQKIVLYN 280 (314)
Q Consensus 239 ~~~~~---------------~~~~~~~h--~~~v~~~~~~~~~~-~l~s~s~dg~i~iw~ 280 (314)
..... |-+.+-.| ...|..|.|+++-. +|++.+.|| +.||.
T Consensus 378 svE~D~ee~~~~a~~~L~dlPpQLLFVHqGQke~KevhWH~QiPG~lvsTa~dG-fnVfk 436 (440)
T KOG0302|consen 378 SVEADEEEIDQEAAEGLQDLPPQLLFVHQGQKEVKEVHWHRQIPGLLVSTAIDG-FNVFK 436 (440)
T ss_pred eccCChhhhccccccchhcCCceeEEEecchhHhhhheeccCCCCeEEEecccc-eeEEE
Confidence 53111 11123334 34688899976532 678888898 45553
No 132
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.89 E-value=2.1e-22 Score=160.60 Aligned_cols=209 Identities=18% Similarity=0.251 Sum_probs=167.4
Q ss_pred CCceeEEEEccCCCEEEEecCCCeEEEEeCCCCeEEEEEeccCCcccEEEEEEcccCCCCeEEEeecCCeEEEEeCCCCC
Q 021291 18 RASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGG 97 (314)
Q Consensus 18 ~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~ 97 (314)
..-|.++...|||+.|++|+.-.++.|||+.........+.....-..+.++.+| |.+..+++..||.|.|||+.+..
T Consensus 465 dnyiRSckL~pdgrtLivGGeastlsiWDLAapTprikaeltssapaCyALa~sp--DakvcFsccsdGnI~vwDLhnq~ 542 (705)
T KOG0639|consen 465 DNYIRSCKLLPDGRTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISP--DAKVCFSCCSDGNIAVWDLHNQT 542 (705)
T ss_pred ccceeeeEecCCCceEEeccccceeeeeeccCCCcchhhhcCCcchhhhhhhcCC--ccceeeeeccCCcEEEEEcccce
Confidence 4678999999999999999999999999997654332222222223378899999 99999999999999999999886
Q ss_pred CCCCCeeeeecceeeEEEeeeeeccccccccCCCCcceeeccCCceeeecCCCCCCceeccCCCceEEEeecCcCeEEEE
Q 021291 98 LSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQLSEVEIW 177 (314)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~vw 177 (314)
+++ .++.+...... +.++++|.++. +|+.|++|+-|
T Consensus 543 ~Vr----qfqGhtDGasc--------------------------------------Idis~dGtklW--TGGlDntvRcW 578 (705)
T KOG0639|consen 543 LVR----QFQGHTDGASC--------------------------------------IDISKDGTKLW--TGGLDNTVRCW 578 (705)
T ss_pred eee----cccCCCCCcee--------------------------------------EEecCCCceee--cCCCccceeeh
Confidence 655 33332221111 56889998877 78899999999
Q ss_pred ecCCCceeeeecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEeecCCcEEEEEccCCCCceEeeecCCcceEE
Q 021291 178 DLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPVLC 257 (314)
Q Consensus 178 d~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~ 257 (314)
|+++++.+..... .+-|+++. ++|. +. ++++|-+++.+.|-... +...+.+.-|.+.|.+
T Consensus 579 DlregrqlqqhdF-------------~SQIfSLg-~cP~---~d-WlavGMens~vevlh~s--kp~kyqlhlheScVLS 638 (705)
T KOG0639|consen 579 DLREGRQLQQHDF-------------SSQIFSLG-YCPT---GD-WLAVGMENSNVEVLHTS--KPEKYQLHLHESCVLS 638 (705)
T ss_pred hhhhhhhhhhhhh-------------hhhheecc-cCCC---cc-ceeeecccCcEEEEecC--CccceeecccccEEEE
Confidence 9999987765542 45688887 9998 55 99999999999988877 4556778889999999
Q ss_pred EEEeCCCCeEEEecCCCcEEEEecCCCeeeEeeee
Q 021291 258 LSIDESCNGGISGGADQKIVLYNLDHSTYVLFGIG 292 (314)
Q Consensus 258 ~~~~~~~~~l~s~s~dg~i~iw~~~~~~~~~~~~~ 292 (314)
+.|.+.|+++++.+.|+.+..|.+..|..+++..+
T Consensus 639 lKFa~cGkwfvStGkDnlLnawrtPyGasiFqskE 673 (705)
T KOG0639|consen 639 LKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSKE 673 (705)
T ss_pred EEecccCceeeecCchhhhhhccCccccceeeccc
Confidence 99999999999999999999999999999887433
No 133
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.89 E-value=1.6e-20 Score=154.70 Aligned_cols=247 Identities=17% Similarity=0.275 Sum_probs=178.3
Q ss_pred CCCceeEEEEccCCCEEEEecCCCeEEEEeCCCCe-EEEEEeccCCcccEEEEEEcccCCCCeEEEeecCCeEEEEeCCC
Q 021291 17 HRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHR-TVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIEN 95 (314)
Q Consensus 17 h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~ 95 (314)
-..+|.++||+.+.+.||.+-.||.|-||++..+= +...+.++.. ..|.+++|++ +..|++.+.+|.|.-||+.+
T Consensus 24 ~Ps~I~slA~s~kS~~lAvsRt~g~IEiwN~~~~w~~~~vi~g~~d-rsIE~L~W~e---~~RLFS~g~sg~i~EwDl~~ 99 (691)
T KOG2048|consen 24 KPSEIVSLAYSHKSNQLAVSRTDGNIEIWNLSNNWFLEPVIHGPED-RSIESLAWAE---GGRLFSSGLSGSITEWDLHT 99 (691)
T ss_pred eccceEEEEEeccCCceeeeccCCcEEEEccCCCceeeEEEecCCC-CceeeEEEcc---CCeEEeecCCceEEEEeccc
Confidence 35789999999998899999999999999998753 3445556554 6799999996 48899999999999999998
Q ss_pred CCCCCCCeeeeecceeeEEEeeeeeccccccccCC---CCcceeeccCCceee-ecCCCCCC----ceeccCCCceEEEe
Q 021291 96 GGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQAN---EPKDCYEREVGETVD-TDSLCDSK----DDVPAEGPKYMAVA 167 (314)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~-~~~~~~~~----~~~~~~~~~~~~~~ 167 (314)
.+. .+......... ++++..+.......+ +.........+.... ..+..... ++|+|++..++ +
T Consensus 100 lk~----~~~~d~~gg~I--Wsiai~p~~~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~~~~~i~--~ 171 (691)
T KOG2048|consen 100 LKQ----KYNIDSNGGAI--WSIAINPENTILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNPTGTKIA--G 171 (691)
T ss_pred Cce----eEEecCCCcce--eEEEeCCccceEEeecCCceEEEEecCCceEEEEeecccccceEEEEEecCCccEEE--e
Confidence 864 33444433332 333333333333333 222222333333222 22322323 88899987655 7
Q ss_pred ecCcCeEEEEecCCCceeeeecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEeecCCcEEEEEccCCCCceEe
Q 021291 168 GEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTA 247 (314)
Q Consensus 168 g~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~~~ 247 (314)
|+.||.|++||..++..+...... .. +-.......++++. |-.+ + .|++|...|+|.+||... +..++.
T Consensus 172 Gs~Dg~Iriwd~~~~~t~~~~~~~--~d--~l~k~~~~iVWSv~-~Lrd---~--tI~sgDS~G~V~FWd~~~-gTLiqS 240 (691)
T KOG2048|consen 172 GSIDGVIRIWDVKSGQTLHIITMQ--LD--RLSKREPTIVWSVL-FLRD---S--TIASGDSAGTVTFWDSIF-GTLIQS 240 (691)
T ss_pred cccCceEEEEEcCCCceEEEeeec--cc--ccccCCceEEEEEE-Eeec---C--cEEEecCCceEEEEcccC-cchhhh
Confidence 888999999999998876632210 00 11122345788888 6644 2 799999999999999998 999999
Q ss_pred eecCCcceEEEEEeCCCCeEEEecCCCcEEEEecCCCee
Q 021291 248 MKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTY 286 (314)
Q Consensus 248 ~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~iw~~~~~~~ 286 (314)
+..|...|.+++.++++.++++++.|+.|..+...+.+.
T Consensus 241 ~~~h~adVl~Lav~~~~d~vfsaGvd~~ii~~~~~~~~~ 279 (691)
T KOG2048|consen 241 HSCHDADVLALAVADNEDRVFSAGVDPKIIQYSLTTNKS 279 (691)
T ss_pred hhhhhcceeEEEEcCCCCeEEEccCCCceEEEEecCCcc
Confidence 999999999999999999999999999999998887755
No 134
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.89 E-value=7.1e-21 Score=140.36 Aligned_cols=221 Identities=15% Similarity=0.191 Sum_probs=163.1
Q ss_pred CCCCceEEecCCCCceeEEEEccCCCEEEEecCCCeEEEEeCCCCeEEEEEeccCCcccEEEEEEcccCCCCeEEEeec-
Q 021291 6 PPPDPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGR- 84 (314)
Q Consensus 6 ~~~~~~~~l~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~- 84 (314)
..++.+.+++||++.|+|++.+.+.++|+||+.|.++++||+++|+++..++.. .+|..+.|++ ++++++.+.+
T Consensus 40 ~nGerlGty~GHtGavW~~Did~~s~~liTGSAD~t~kLWDv~tGk~la~~k~~---~~Vk~~~F~~--~gn~~l~~tD~ 114 (327)
T KOG0643|consen 40 LNGERLGTYDGHTGAVWCCDIDWDSKHLITGSADQTAKLWDVETGKQLATWKTN---SPVKRVDFSF--GGNLILASTDK 114 (327)
T ss_pred cCCceeeeecCCCceEEEEEecCCcceeeeccccceeEEEEcCCCcEEEEeecC---CeeEEEeecc--CCcEEEEEehh
Confidence 356789999999999999999999999999999999999999999999998765 5699999999 8888776654
Q ss_pred ----CCeEEEEeCCCCCC---CCCCeeeeecce--eeEEEeeeeeccccccccCCCCcceeeccCCceeeecCCCCCC--
Q 021291 85 ----DGTVKCWDIENGGL---SSNPSLTIKTNS--YHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSK-- 153 (314)
Q Consensus 85 ----dg~v~iwd~~~~~~---~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 153 (314)
.+.|.++|++.... ..+|.+.+.... .....+.+.. ......-..+....|+.+.+.........|..
T Consensus 115 ~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg~l~-~~ii~Ghe~G~is~~da~~g~~~v~s~~~h~~~I 193 (327)
T KOG0643|consen 115 QMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWGPLG-ETIIAGHEDGSISIYDARTGKELVDSDEEHSSKI 193 (327)
T ss_pred hcCcceEEEEEEccCChhhhcccCceEEecCCccceeeeeecccC-CEEEEecCCCcEEEEEcccCceeeechhhhcccc
Confidence 46899999984331 223344444433 1222222211 12233445567788899888777666666655
Q ss_pred --ceeccCCCceEEEeecCcCeEEEEecCCCceeeeecccccCCCCCc--------------------------------
Q 021291 154 --DDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNF-------------------------------- 199 (314)
Q Consensus 154 --~~~~~~~~~~~~~~g~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~h-------------------------------- 199 (314)
+.++++..+++ +++.|.+-++||.++.+.+.++..++.++..+.
T Consensus 194 nd~q~s~d~T~Fi--T~s~Dttakl~D~~tl~v~Kty~te~PvN~aaisP~~d~VilgGGqeA~dVTTT~~r~GKFEArF 271 (327)
T KOG0643|consen 194 NDLQFSRDRTYFI--TGSKDTTAKLVDVRTLEVLKTYTTERPVNTAAISPLLDHVILGGGQEAMDVTTTSTRAGKFEARF 271 (327)
T ss_pred ccccccCCcceEE--ecccCccceeeeccceeeEEEeeecccccceecccccceEEecCCceeeeeeeecccccchhhhH
Confidence 99999988665 788999999999999888777764433222111
Q ss_pred -----------CCCCCceeeeEEEecCCCCCCceEEEEeecCCcEEEEEcc
Q 021291 200 -----------SSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIR 239 (314)
Q Consensus 200 -----------~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~ 239 (314)
-..+-+++.+++ |+|+ |. ..++|++||.|++.-..
T Consensus 272 yh~i~eEEigrvkGHFGPINsvA-fhPd---Gk-sYsSGGEDG~VR~h~Fd 317 (327)
T KOG0643|consen 272 YHLIFEEEIGRVKGHFGPINSVA-FHPD---GK-SYSSGGEDGYVRLHHFD 317 (327)
T ss_pred HHHHHHHHhccccccccCcceeE-ECCC---Cc-ccccCCCCceEEEEEec
Confidence 012346788998 9999 55 79999999999997655
No 135
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.89 E-value=3.8e-21 Score=144.89 Aligned_cols=226 Identities=16% Similarity=0.246 Sum_probs=150.3
Q ss_pred CceEEecCCCCceeEEEEccCCC--EEEEecCCCeEEEEeCCCCeEEEEEeccCCcccEEEEEEcccCCCCeEEEeecCC
Q 021291 9 DPVAVLRGHRASVTDVCFHQTKP--ILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDG 86 (314)
Q Consensus 9 ~~~~~l~~h~~~v~~~~~~~~~~--~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg 86 (314)
..+..+-.|.+.|+++.|.+.-. .|++|+.||.|.+|+....+++.++++|.+. |+.++.+| .+++-++.+.|+
T Consensus 74 ~qlg~ll~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~~~W~~~~slK~H~~~--Vt~lsiHP--S~KLALsVg~D~ 149 (362)
T KOG0294|consen 74 KQLGILLSHAGSITALKFYPPLSKSHLLSGSDDGHIIIWRVGSWELLKSLKAHKGQ--VTDLSIHP--SGKLALSVGGDQ 149 (362)
T ss_pred hhhcceeccccceEEEEecCCcchhheeeecCCCcEEEEEcCCeEEeeeecccccc--cceeEecC--CCceEEEEcCCc
Confidence 34566778999999999998654 8999999999999999999999999999966 99999999 888888999999
Q ss_pred eEEEEeCCCCCCCCCCeeeeecceeeEEEeeeeeccccccccCCCCcceeeccCCceeeecCCCCCCceeccCCCceEEE
Q 021291 87 TVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAV 166 (314)
Q Consensus 87 ~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (314)
.++.||+-+++.-. +..+..... ...|.+.+ ............+|.+...............++..+.....++
T Consensus 150 ~lr~WNLV~Gr~a~--v~~L~~~at-~v~w~~~G--d~F~v~~~~~i~i~q~d~A~v~~~i~~~~r~l~~~~l~~~~L~- 223 (362)
T KOG0294|consen 150 VLRTWNLVRGRVAF--VLNLKNKAT-LVSWSPQG--DHFVVSGRNKIDIYQLDNASVFREIENPKRILCATFLDGSELL- 223 (362)
T ss_pred eeeeehhhcCccce--eeccCCcce-eeEEcCCC--CEEEEEeccEEEEEecccHhHhhhhhccccceeeeecCCceEE-
Confidence 99999998886422 223332222 22333222 1122222233344444333222111111111333333333444
Q ss_pred eecCcCeEEEEecCCCceeeeecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEeecCCcEEEEEccCCC----
Q 021291 167 AGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPG---- 242 (314)
Q Consensus 167 ~g~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~---- 242 (314)
+|..|+.|.+||..+..+...+. +|...+.+.. .|.. +++. +|++++.||.|+|||++...
T Consensus 224 vG~d~~~i~~~D~ds~~~~~~~~--------AH~~RVK~i~----~~~~--~~~~-~lvTaSSDG~I~vWd~~~~~k~~~ 288 (362)
T KOG0294|consen 224 VGGDNEWISLKDTDSDTPLTEFL--------AHENRVKDIA----SYTN--PEHE-YLVTASSDGFIKVWDIDMETKKRP 288 (362)
T ss_pred EecCCceEEEeccCCCccceeee--------cchhheeeeE----EEec--CCce-EEEEeccCceEEEEEccccccCCc
Confidence 46668999999999988888888 8877555432 1221 2244 99999999999999998621
Q ss_pred CceEeeecCCcceEEEEE
Q 021291 243 IPLTAMKVHLEPVLCLSI 260 (314)
Q Consensus 243 ~~~~~~~~h~~~v~~~~~ 260 (314)
.++..+.. ...++|+..
T Consensus 289 ~~l~e~n~-~~RltCl~~ 305 (362)
T KOG0294|consen 289 TLLAELNT-NVRLTCLRV 305 (362)
T ss_pred ceeEEeec-CCccceeee
Confidence 34444443 456666654
No 136
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.88 E-value=3.2e-21 Score=153.70 Aligned_cols=218 Identities=15% Similarity=0.176 Sum_probs=178.9
Q ss_pred eeEEEEccCCCEEEEecCCCeEEEEeCCCCeEEEEEeccCCcccEEEEEEcccCCCCeEEEeecCCeEEEEeCCCCCCCC
Q 021291 21 VTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGGLSS 100 (314)
Q Consensus 21 v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~ 100 (314)
-.|++......|+++|+..+.|+|||++...+.+.+++|... |+++.++- ...+|++++..|.|.|-.+.++....
T Consensus 82 ~~Cv~~~s~S~y~~sgG~~~~Vkiwdl~~kl~hr~lkdh~st--vt~v~YN~--~DeyiAsvs~gGdiiih~~~t~~~tt 157 (673)
T KOG4378|consen 82 AFCVACASQSLYEISGGQSGCVKIWDLRAKLIHRFLKDHQST--VTYVDYNN--TDEYIASVSDGGDIIIHGTKTKQKTT 157 (673)
T ss_pred HHHHhhhhcceeeeccCcCceeeehhhHHHHHhhhccCCcce--eEEEEecC--CcceeEEeccCCcEEEEecccCcccc
Confidence 345555555579999999999999999977788888999954 99999998 77999999999999999999876433
Q ss_pred CCeeeee-cceeeEEEeeeeeccccccccCCCCcceeeccCCceeeecCCCCCC----ceeccCCCceEEEeecCcCeEE
Q 021291 101 NPSLTIK-TNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSK----DDVPAEGPKYMAVAGEQLSEVE 175 (314)
Q Consensus 101 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~g~~d~~i~ 175 (314)
.+... ........+++..........+.+.+.+|++............|.. ++|+|.++.+++..| .|..|.
T Consensus 158 --~f~~~sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~g~sp~~~~~~~HsAP~~gicfspsne~l~vsVG-~Dkki~ 234 (673)
T KOG4378|consen 158 --TFTIDSGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGMSPIFHASEAHSAPCRGICFSPSNEALLVSVG-YDKKIN 234 (673)
T ss_pred --ceecCCCCeEEEeecccccceeeEeeccCCeEEEEeccCCCcccchhhhccCCcCcceecCCccceEEEec-ccceEE
Confidence 33333 2333456677777777788888899999999988888877777777 999999988887555 599999
Q ss_pred EEecCCCceeeeecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEeecCCcEEEEEccCCCCceEeeecCCcce
Q 021291 176 IWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPV 255 (314)
Q Consensus 176 vwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~h~~~v 255 (314)
+||.+.......+.- ..+..+++ |.++ |. +|++|...|.|..||++....|+..+.+|...|
T Consensus 235 ~yD~~s~~s~~~l~y-------------~~Plstva-f~~~---G~-~L~aG~s~G~~i~YD~R~~k~Pv~v~sah~~sV 296 (673)
T KOG4378|consen 235 IYDIRSQASTDRLTY-------------SHPLSTVA-FSEC---GT-YLCAGNSKGELIAYDMRSTKAPVAVRSAHDASV 296 (673)
T ss_pred Eeecccccccceeee-------------cCCcceee-ecCC---ce-EEEeecCCceEEEEecccCCCCceEeeecccce
Confidence 999998776666652 33677777 9998 55 999999999999999998889999999999999
Q ss_pred EEEEEeCC
Q 021291 256 LCLSIDES 263 (314)
Q Consensus 256 ~~~~~~~~ 263 (314)
++++|-+.
T Consensus 297 t~vafq~s 304 (673)
T KOG4378|consen 297 TRVAFQPS 304 (673)
T ss_pred eEEEeeec
Confidence 99999654
No 137
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.88 E-value=4.2e-21 Score=143.09 Aligned_cols=212 Identities=18% Similarity=0.250 Sum_probs=154.1
Q ss_pred EEecCCCCceeEEEEcc-CCCEEEEecCC-------CeEEEEeCCCCe---------EEEEEe-ccCCcccEEEEEEccc
Q 021291 12 AVLRGHRASVTDVCFHQ-TKPILFAGTTG-------GELRIWDTVQHR---------TVSSSW-VHSAAHGIVSVATGPS 73 (314)
Q Consensus 12 ~~l~~h~~~v~~~~~~~-~~~~l~s~~~d-------g~v~iwd~~~~~---------~~~~~~-~~~~~~~v~~~~~~~~ 73 (314)
++|..|.++|+.++-+| +.++|+|+..+ -.+.||.+.+.. ++..+. .+- ..|.|+.|.|
T Consensus 57 kvf~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v~~Ldteav--g~i~cvew~P- 133 (370)
T KOG1007|consen 57 KVFFHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLECVASLDTEAV--GKINCVEWEP- 133 (370)
T ss_pred hhhhcCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCccccchhhHhhcCCHHHh--CceeeEEEcC-
Confidence 45677899999999999 66778877542 247899987532 233333 223 3499999999
Q ss_pred CCCCeEEEeecCCeEEEEeCCCCCCCCCCeeeeecceeeEEEeeeeeccccccccCCCCcceeeccCCceeeecCCCCCC
Q 021291 74 IGLNKVISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSK 153 (314)
Q Consensus 74 ~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (314)
++..+++-. |..|.+|++.....+.. .+..+........|. .
T Consensus 134 -ns~klasm~-dn~i~l~~l~ess~~va-ev~ss~s~e~~~~ft--s--------------------------------- 175 (370)
T KOG1007|consen 134 -NSDKLASMD-DNNIVLWSLDESSKIVA-EVLSSESAEMRHSFT--S--------------------------------- 175 (370)
T ss_pred -CCCeeEEec-cCceEEEEcccCcchhe-eecccccccccceec--c---------------------------------
Confidence 888998877 78999999988754211 111111000000000 0
Q ss_pred ceecc--CCCceEEEeecCcCeEEEEecCCCceeeeecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEeecCC
Q 021291 154 DDVPA--EGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDG 231 (314)
Q Consensus 154 ~~~~~--~~~~~~~~~g~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg 231 (314)
-+|+| +++ .+++++ |+++..||+|+..+...+.. +| ...+..+. |+|+ .+.+|++++.||
T Consensus 176 g~WspHHdgn-qv~tt~--d~tl~~~D~RT~~~~~sI~d-------AH----gq~vrdlD-fNpn---kq~~lvt~gDdg 237 (370)
T KOG1007|consen 176 GAWSPHHDGN-QVATTS--DSTLQFWDLRTMKKNNSIED-------AH----GQRVRDLD-FNPN---KQHILVTCGDDG 237 (370)
T ss_pred cccCCCCccc-eEEEeC--CCcEEEEEccchhhhcchhh-------hh----cceeeecc-CCCC---ceEEEEEcCCCc
Confidence 35887 343 343333 69999999999888877764 55 34788888 9998 555999999999
Q ss_pred cEEEEEccCCCCceEeeecCCcceEEEEEeCC-CCeEEEecCCCcEEEEecC
Q 021291 232 SILVWDIRNPGIPLTAMKVHLEPVLCLSIDES-CNGGISGGADQKIVLYNLD 282 (314)
Q Consensus 232 ~i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~-~~~l~s~s~dg~i~iw~~~ 282 (314)
.|++||.|....++.++.+|..+|+++.|+|. .++|.|||.|..|.+|...
T Consensus 238 yvriWD~R~tk~pv~el~~HsHWvW~VRfn~~hdqLiLs~~SDs~V~Lsca~ 289 (370)
T KOG1007|consen 238 YVRIWDTRKTKFPVQELPGHSHWVWAVRFNPEHDQLILSGGSDSAVNLSCAS 289 (370)
T ss_pred cEEEEeccCCCccccccCCCceEEEEEEecCccceEEEecCCCceeEEEecc
Confidence 99999999989999999999999999999764 4578999999999999764
No 138
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.87 E-value=2.1e-20 Score=144.94 Aligned_cols=208 Identities=19% Similarity=0.315 Sum_probs=154.6
Q ss_pred EecCCCCceeEEEEcc-CCCEEEEecCCCeEEEEeCCCC-------eEEEEEeccCCcccEEEEEEcccCCCCeEEEeec
Q 021291 13 VLRGHRASVTDVCFHQ-TKPILFAGTTGGELRIWDTVQH-------RTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGR 84 (314)
Q Consensus 13 ~l~~h~~~v~~~~~~~-~~~~l~s~~~dg~v~iwd~~~~-------~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~ 84 (314)
.+.||+++|..++|+| +...||+||.|.+|.||++..+ +.+..+.+|. ..|--++|+|. ..+.|++++.
T Consensus 76 ~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~--rrVg~V~wHPt-A~NVLlsag~ 152 (472)
T KOG0303|consen 76 LVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQ--RRVGLVQWHPT-APNVLLSAGS 152 (472)
T ss_pred CccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecc--eeEEEEeeccc-chhhHhhccC
Confidence 4679999999999999 6779999999999999998764 3567788998 55999999996 4478999999
Q ss_pred CCeEEEEeCCCCCCCCCCeeeeecceeeEEEeeeeeccccccccCCCCcceeeccCCceeeecCCCCCCceeccCCCceE
Q 021291 85 DGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYM 164 (314)
Q Consensus 85 dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (314)
|.+|.+||+.+++. ++++. ++... ++ ++|+.+|..+.
T Consensus 153 Dn~v~iWnv~tgea----li~l~-hpd~i--~S------------------------------------~sfn~dGs~l~ 189 (472)
T KOG0303|consen 153 DNTVSIWNVGTGEA----LITLD-HPDMV--YS------------------------------------MSFNRDGSLLC 189 (472)
T ss_pred CceEEEEeccCCce----eeecC-CCCeE--EE------------------------------------EEeccCCceee
Confidence 99999999999975 33444 22111 11 55888987543
Q ss_pred EEeecCcCeEEEEecCCCceeeeecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEee---cCCcEEEEEccCC
Q 021291 165 AVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGY---EDGSILVWDIRNP 241 (314)
Q Consensus 165 ~~~g~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~---~dg~i~vwd~~~~ 241 (314)
+.+.|..|+|||.++++.+..-. +|.......+ . |--+ |. ++.+|. .+..+-+||..+.
T Consensus 190 --TtckDKkvRv~dpr~~~~v~e~~--------~heG~k~~Ra---i-fl~~---g~-i~tTGfsr~seRq~aLwdp~nl 251 (472)
T KOG0303|consen 190 --TTCKDKKVRVIDPRRGTVVSEGV--------AHEGAKPARA---I-FLAS---GK-IFTTGFSRMSERQIALWDPNNL 251 (472)
T ss_pred --eecccceeEEEcCCCCcEeeecc--------cccCCCccee---E-Eecc---Cc-eeeeccccccccceeccCcccc
Confidence 66679999999999999888775 6755333333 2 6555 54 565553 4678999999876
Q ss_pred CCceE--eeecCCcceEEEEEeCCCCeE-EEecCCCcEEEEecCCCe
Q 021291 242 GIPLT--AMKVHLEPVLCLSIDESCNGG-ISGGADQKIVLYNLDHST 285 (314)
Q Consensus 242 ~~~~~--~~~~h~~~v~~~~~~~~~~~l-~s~s~dg~i~iw~~~~~~ 285 (314)
.+++. ++.. +..|.---|+++...+ +.|-.|+.||.|++....
T Consensus 252 ~eP~~~~elDt-SnGvl~PFyD~dt~ivYl~GKGD~~IRYyEit~d~ 297 (472)
T KOG0303|consen 252 EEPIALQELDT-SNGVLLPFYDPDTSIVYLCGKGDSSIRYFEITNEP 297 (472)
T ss_pred cCcceeEEecc-CCceEEeeecCCCCEEEEEecCCcceEEEEecCCC
Confidence 66653 3333 4455544558888776 455579999999998766
No 139
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.87 E-value=1.6e-19 Score=144.30 Aligned_cols=253 Identities=15% Similarity=0.140 Sum_probs=167.3
Q ss_pred EecCC-CCceeEEEEccCCCEEEEecCCCeEEEEeCCCCeEEEEEeccCCcccEEEEEEcccCCCCeEEEeecCCeEEEE
Q 021291 13 VLRGH-RASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCW 91 (314)
Q Consensus 13 ~l~~h-~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~v~iw 91 (314)
.|+++ ++-|.|++|.++|. ++||..+|.|.||+..+.+..+....|. ..|.+++... +|. |++|+.|+.|..|
T Consensus 240 ~fek~ekk~Vl~v~F~engd-viTgDS~G~i~Iw~~~~~~~~k~~~aH~--ggv~~L~~lr--~Gt-llSGgKDRki~~W 313 (626)
T KOG2106|consen 240 IFEKREKKFVLCVTFLENGD-VITGDSGGNILIWSKGTNRISKQVHAHD--GGVFSLCMLR--DGT-LLSGGKDRKIILW 313 (626)
T ss_pred ccccccceEEEEEEEcCCCC-EEeecCCceEEEEeCCCceEEeEeeecC--CceEEEEEec--Ccc-EeecCccceEEec
Confidence 34443 36799999999884 7899999999999988777776666777 5599999988 754 5569999999999
Q ss_pred eCCCCCCCCCCeeeeecceeeEEEeeeeeccccccccCCCCccee--eccCCceeeecCCCCCC----ceeccCCCceEE
Q 021291 92 DIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCY--EREVGETVDTDSLCDSK----DDVPAEGPKYMA 165 (314)
Q Consensus 92 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~ 165 (314)
|-.-.+ .+ ..+++........+.... +. .........+. .+...-. ....+|.+ ++.+|+.+.++
T Consensus 314 d~~y~k-~r--~~elPe~~G~iRtv~e~~-~d--i~vGTtrN~iL~Gt~~~~f~--~~v~gh~delwgla~hps~~q~~- 384 (626)
T KOG2106|consen 314 DDNYRK-LR--ETELPEQFGPIRTVAEGK-GD--ILVGTTRNFILQGTLENGFT--LTVQGHGDELWGLATHPSKNQLL- 384 (626)
T ss_pred cccccc-cc--cccCchhcCCeeEEecCC-Cc--EEEeeccceEEEeeecCCce--EEEEecccceeeEEcCCChhhee-
Confidence 933222 11 122222221111111111 11 01111111111 1111111 12223333 77888876554
Q ss_pred EeecCcCeEEEEecCCCceeeeecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEeecCCcEEEEEccCCCCce
Q 021291 166 VAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPL 245 (314)
Q Consensus 166 ~~g~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~ 245 (314)
+++.|+.+++|+ ..++..+.. ....+.++. |+|. | .++.|...|...+.|..+ ...+
T Consensus 385 -T~gqdk~v~lW~--~~k~~wt~~-------------~~d~~~~~~-fhps---g--~va~Gt~~G~w~V~d~e~-~~lv 441 (626)
T KOG2106|consen 385 -TCGQDKHVRLWN--DHKLEWTKI-------------IEDPAECAD-FHPS---G--VVAVGTATGRWFVLDTET-QDLV 441 (626)
T ss_pred -eccCcceEEEcc--CCceeEEEE-------------ecCceeEee-ccCc---c--eEEEeeccceEEEEeccc-ceeE
Confidence 566799999999 444444433 233677777 9997 5 799999999999999997 5555
Q ss_pred EeeecCCcceEEEEEeCCCCeEEEecCCCcEEEEecCCCeeeEe---------eeeeeecCCCceece
Q 021291 246 TAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTYVLF---------GIGFVCDQEGNKFGT 304 (314)
Q Consensus 246 ~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~iw~~~~~~~~~~---------~~~~~~~~~~~~~~~ 304 (314)
..-.. .++++.++|+|+|.+||.|+.|+.|+||.+......+. +..+..++++..+.+
T Consensus 442 ~~~~d-~~~ls~v~ysp~G~~lAvgs~d~~iyiy~Vs~~g~~y~r~~k~~gs~ithLDwS~Ds~~~~~ 508 (626)
T KOG2106|consen 442 TIHTD-NEQLSVVRYSPDGAFLAVGSHDNHIYIYRVSANGRKYSRVGKCSGSPITHLDWSSDSQFLVS 508 (626)
T ss_pred EEEec-CCceEEEEEcCCCCEEEEecCCCeEEEEEECCCCcEEEEeeeecCceeEEeeecCCCceEEe
Confidence 55555 89999999999999999999999999999988776664 233445566555443
No 140
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.87 E-value=3.5e-21 Score=145.92 Aligned_cols=247 Identities=16% Similarity=0.174 Sum_probs=154.6
Q ss_pred CCCCceEEecCCCCceeEEEEccC-CCEEEEecCCCeEEEEeCCCCeEEEEEe---ccCCcccEEEEEEcccCCCCeEEE
Q 021291 6 PPPDPVAVLRGHRASVTDVCFHQT-KPILFAGTTGGELRIWDTVQHRTVSSSW---VHSAAHGIVSVATGPSIGLNKVIS 81 (314)
Q Consensus 6 ~~~~~~~~l~~h~~~v~~~~~~~~-~~~l~s~~~dg~v~iwd~~~~~~~~~~~---~~~~~~~v~~~~~~~~~~~~~l~s 81 (314)
...++...+.||...|+.+.|.|+ .++++++|.|..||+|++++..++..+- +|. +.|.++.|++ ++.+|++
T Consensus 123 ~~~~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~Cv~VfGG~egHr--deVLSvD~~~--~gd~i~S 198 (385)
T KOG1034|consen 123 VSGQCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVCVAVFGGVEGHR--DEVLSVDFSL--DGDRIAS 198 (385)
T ss_pred chhhhccceeccCccchhhhcCCCCCcEEEEecCCceEEEEeccCCeEEEEeccccccc--CcEEEEEEcC--CCCeeec
Confidence 345677889999999999999994 5799999999999999999999998874 576 4499999999 9999999
Q ss_pred eecCCeEEEEeCCCCCCCCCCee--eeecceeeEEEeeeeeccccccccCCCCcceeeccCCceeeecCCCCCC--ceec
Q 021291 82 QGRDGTVKCWDIENGGLSSNPSL--TIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSK--DDVP 157 (314)
Q Consensus 82 ~~~dg~v~iwd~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~ 157 (314)
++.|.+|++|++...+....... ........ ..|-...... .......-|.. -+.-
T Consensus 199 cGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~-~pfpt~~~~f-------------------p~fst~diHrnyVDCvr 258 (385)
T KOG1034|consen 199 CGMDHSLKLWRLNVKEFKNKLELSITYSPNKTT-RPFPTPKTHF-------------------PDFSTTDIHRNYVDCVR 258 (385)
T ss_pred cCCcceEEEEecChhHHhhhhhhhcccCCCCcc-CcCCcccccc-------------------ccccccccccchHHHHH
Confidence 99999999999986543221000 00000000 0000000000 00001111222 1111
Q ss_pred cCCCceEEEeecCcCeEEEEec-CCCceeeeecccc-cCCCCCcCCCCCceeeeEE-EecCCCCCCceEEEEeecCCcEE
Q 021291 158 AEGPKYMAVAGEQLSEVEIWDL-NTAERCTRLHQNS-CGGSPNFSSKGRGMCMAVQ-AYLPSKSQGFVNVLAGYEDGSIL 234 (314)
Q Consensus 158 ~~~~~~~~~~g~~d~~i~vwd~-~~~~~~~~~~~~~-~~~~~~h~~~~~~~~~~~~-~~~p~~~~g~~~l~~g~~dg~i~ 234 (314)
--|+.++ +-+.++.|..|-. +-.+.+...+.+. .....++-......++-+. +|.|. ++ .|+.|.+.|.|+
T Consensus 259 w~gd~il--SkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~---~~-~la~gnq~g~v~ 332 (385)
T KOG1034|consen 259 WFGDFIL--SKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDPW---QK-MLALGNQSGKVY 332 (385)
T ss_pred HHhhhee--ecccCceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEeecHH---HH-HHhhccCCCcEE
Confidence 2344443 4555789999987 3333322221111 0111122222233344443 25554 44 899999999999
Q ss_pred EEEccCCCCce-Eeee--cCCcceEEEEEeCCCCeEEEecCCCcEEEEecC
Q 021291 235 VWDIRNPGIPL-TAMK--VHLEPVLCLSIDESCNGGISGGADQKIVLYNLD 282 (314)
Q Consensus 235 vwd~~~~~~~~-~~~~--~h~~~v~~~~~~~~~~~l~s~s~dg~i~iw~~~ 282 (314)
+||+++...+. .++. .....|...+|+.++.+|+..+.|++|--||.-
T Consensus 333 vwdL~~~ep~~~ttl~~s~~~~tVRQ~sfS~dgs~lv~vcdd~~Vwrwdrv 383 (385)
T KOG1034|consen 333 VWDLDNNEPPKCTTLTHSKSGSTVRQTSFSRDGSILVLVCDDGTVWRWDRV 383 (385)
T ss_pred EEECCCCCCccCceEEeccccceeeeeeecccCcEEEEEeCCCcEEEEEee
Confidence 99999733322 2222 224579999999999999999999999999854
No 141
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.87 E-value=1.3e-19 Score=136.30 Aligned_cols=228 Identities=12% Similarity=0.173 Sum_probs=152.5
Q ss_pred ceEEecCCCCceeEEEEcc--CCCEEEEecCCCeEEEEeCCCC---------eEEEEEeccCCcccEEEEEEcccCCCCe
Q 021291 10 PVAVLRGHRASVTDVCFHQ--TKPILFAGTTGGELRIWDTVQH---------RTVSSSWVHSAAHGIVSVATGPSIGLNK 78 (314)
Q Consensus 10 ~~~~l~~h~~~v~~~~~~~--~~~~l~s~~~dg~v~iwd~~~~---------~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 78 (314)
+....+.|.+.|..+.|.+ -|+.+|+++.|++++||.-... ....++.... ..|+.+.|.|..-|-.
T Consensus 51 ~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iWEE~~~~~~~~~~~Wv~~ttl~Dsr--ssV~DV~FaP~hlGLk 128 (361)
T KOG2445|consen 51 CTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSIWEEQEKSEEAHGRRWVRRTTLVDSR--SSVTDVKFAPKHLGLK 128 (361)
T ss_pred EeeeEEecCCcEEEEEecCccccceEEEEecCCceeeeeecccccccccceeEEEEEeecCC--cceeEEEecchhcceE
Confidence 4556778999999999987 6899999999999999985211 2334455555 4499999999767788
Q ss_pred EEEeecCCeEEEEeCCCCCCCCCCeeeeecceeeEEEeeeeeccccccccCCCCcceeeccCCceeeecCCCCCC---ce
Q 021291 79 VISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSK---DD 155 (314)
Q Consensus 79 l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~ 155 (314)
|++++.||+|+||+.-..--.. ..++...-.. . ..+.+ ..+.. +.
T Consensus 129 lA~~~aDG~lRIYEA~dp~nLs--~W~Lq~Ei~~-~-~~pp~----------------------------~~~~~~~Cvs 176 (361)
T KOG2445|consen 129 LAAASADGILRIYEAPDPMNLS--QWTLQHEIQN-V-IDPPG----------------------------KNKQPCFCVS 176 (361)
T ss_pred EEEeccCcEEEEEecCCccccc--cchhhhhhhh-c-cCCcc----------------------------cccCcceEEe
Confidence 9999999999999875432111 0111100000 0 00000 00000 34
Q ss_pred eccCC--CceEEEeecCc-----CeEEEEecCCCc----eeeeecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEE
Q 021291 156 VPAEG--PKYMAVAGEQL-----SEVEIWDLNTAE----RCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNV 224 (314)
Q Consensus 156 ~~~~~--~~~~~~~g~~d-----~~i~vwd~~~~~----~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l 224 (314)
|+|.. +.+++ .|+.+ +.++||...... .+..+. +| ..++..+. |.|+-.....+|
T Consensus 177 Wn~sr~~~p~iA-vgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~--------d~----~dpI~di~-wAPn~Gr~y~~l 242 (361)
T KOG2445|consen 177 WNPSRMHEPLIA-VGSDEDAPHLNKVKIYEYNENGRKWLKVAELP--------DH----TDPIRDIS-WAPNIGRSYHLL 242 (361)
T ss_pred eccccccCceEE-EEcccCCccccceEEEEecCCcceeeeehhcC--------CC----CCcceeee-eccccCCceeeE
Confidence 54332 33444 45533 378888765433 233333 45 55788887 999843333478
Q ss_pred EEeecCCcEEEEEccCCC-------------------CceEeeecCCcceEEEEEeCCCCeEEEecCCCcEEEEecCCCe
Q 021291 225 LAGYEDGSILVWDIRNPG-------------------IPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHST 285 (314)
Q Consensus 225 ~~g~~dg~i~vwd~~~~~-------------------~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~iw~~~~~~ 285 (314)
++++.|| |+||.++... +.+..+..|...|+.+.|+-.|..|++.|.||+||+|...-..
T Consensus 243 AvA~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNmtGtiLsStGdDG~VRLWkany~n 321 (361)
T KOG2445|consen 243 AVATKDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNMTGTILSSTGDDGCVRLWKANYNN 321 (361)
T ss_pred EEeecCc-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEEeeeeeEEeecCCCceeeehhhhhhh
Confidence 9999999 9999987311 1345577999999999999999999999999999999876554
Q ss_pred e
Q 021291 286 Y 286 (314)
Q Consensus 286 ~ 286 (314)
+
T Consensus 322 ~ 322 (361)
T KOG2445|consen 322 L 322 (361)
T ss_pred h
Confidence 3
No 142
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.87 E-value=7.8e-19 Score=142.45 Aligned_cols=248 Identities=9% Similarity=0.082 Sum_probs=158.5
Q ss_pred CCEEEEecCCCeEEEEeCCCCeEEEEEeccCCcccEEEEEEcccCCCCeE-EEeecCCeEEEEeCCCCCCCCCCeeeeec
Q 021291 30 KPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKV-ISQGRDGTVKCWDIENGGLSSNPSLTIKT 108 (314)
Q Consensus 30 ~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l-~s~~~dg~v~iwd~~~~~~~~~~~~~~~~ 108 (314)
++.+++++.|+.|++||+.+++.+..+..+. .+.+++|+| +++.+ ++++.++.|++||..+++... .+....
T Consensus 1 ~~~~~s~~~d~~v~~~d~~t~~~~~~~~~~~---~~~~l~~~~--dg~~l~~~~~~~~~v~~~d~~~~~~~~--~~~~~~ 73 (300)
T TIGR03866 1 EKAYVSNEKDNTISVIDTATLEVTRTFPVGQ---RPRGITLSK--DGKLLYVCASDSDTIQVIDLATGEVIG--TLPSGP 73 (300)
T ss_pred CcEEEEecCCCEEEEEECCCCceEEEEECCC---CCCceEECC--CCCEEEEEECCCCeEEEEECCCCcEEE--eccCCC
Confidence 3578899999999999999999888887653 267899999 88876 567789999999999876533 111111
Q ss_pred ceeeEEEeeeeeccccccccCCCCcceeeccCCceeeecCCCC--CCceeccCCCceEEEeecCcCeEEEEecCCCceee
Q 021291 109 NSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCD--SKDDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCT 186 (314)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~g~~d~~i~vwd~~~~~~~~ 186 (314)
......+++................+|++...........+. ..++|+|+++.+++ +...+..+.+||.++++...
T Consensus 74 -~~~~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~dg~~l~~-~~~~~~~~~~~d~~~~~~~~ 151 (300)
T TIGR03866 74 -DPELFALHPNGKILYIANEDDNLVTVIDIETRKVLAEIPVGVEPEGMAVSPDGKIVVN-TSETTNMAHFIDTKTYEIVD 151 (300)
T ss_pred -CccEEEECCCCCEEEEEcCCCCeEEEEECCCCeEEeEeeCCCCcceEEECCCCCEEEE-EecCCCeEEEEeCCCCeEEE
Confidence 112222333322222222234566777776654333222122 12899999986554 33323467788998877665
Q ss_pred eecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEeecCCcEEEEEccCCCCceEeeecCC-----c--ceEEEE
Q 021291 187 RLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHL-----E--PVLCLS 259 (314)
Q Consensus 187 ~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~h~-----~--~v~~~~ 259 (314)
.+.. + .....+. |+|+ ++.+++++..++.|++||+++ ++.+..+..+. . ....++
T Consensus 152 ~~~~-------~------~~~~~~~-~s~d---g~~l~~~~~~~~~v~i~d~~~-~~~~~~~~~~~~~~~~~~~~~~~i~ 213 (300)
T TIGR03866 152 NVLV-------D------QRPRFAE-FTAD---GKELWVSSEIGGTVSVIDVAT-RKVIKKITFEIPGVHPEAVQPVGIK 213 (300)
T ss_pred EEEc-------C------CCccEEE-ECCC---CCEEEEEcCCCCEEEEEEcCc-ceeeeeeeecccccccccCCccceE
Confidence 4431 1 1234455 9998 553445666799999999997 66666554321 1 234688
Q ss_pred EeCCCCeEEE-ecCCCcEEEEecCCCeeeEe------eeeeeecCCCceece
Q 021291 260 IDESCNGGIS-GGADQKIVLYNLDHSTYVLF------GIGFVCDQEGNKFGT 304 (314)
Q Consensus 260 ~~~~~~~l~s-~s~dg~i~iw~~~~~~~~~~------~~~~~~~~~~~~~~~ 304 (314)
|++++++++. .+.++.+.+||+++++.+.. ...++++|+|..+..
T Consensus 214 ~s~dg~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~ 265 (300)
T TIGR03866 214 LTKDGKTAFVALGPANRVAVVDAKTYEVLDYLLVGQRVWQLAFTPDEKYLLT 265 (300)
T ss_pred ECCCCCEEEEEcCCCCeEEEEECCCCcEEEEEEeCCCcceEEECCCCCEEEE
Confidence 9999997544 45567899999998776543 233567777776543
No 143
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.87 E-value=7.3e-21 Score=150.31 Aligned_cols=204 Identities=19% Similarity=0.213 Sum_probs=149.5
Q ss_pred CCCCceEEecCCCCceeEEEEccCCCEEEEecCCCeEEEEeCCC---------CeEEEEEeccCCcccEEEEEEcccCCC
Q 021291 6 PPPDPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQ---------HRTVSSSWVHSAAHGIVSVATGPSIGL 76 (314)
Q Consensus 6 ~~~~~~~~l~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~---------~~~~~~~~~~~~~~~v~~~~~~~~~~~ 76 (314)
..++++..+.+|=..|+|+.|+.||.+|+|||.||.|.+|.+.+ -+.+..+..|. -+|+++...+..-.
T Consensus 111 ssG~LL~v~~aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~lv~a~~~~~~~p~~~f~~Ht--lsITDl~ig~Gg~~ 188 (476)
T KOG0646|consen 111 SSGILLNVLSAHYQSITCLKFSDDGSHIITGSKDGAVLVWLLTDLVSADNDHSVKPLHIFSDHT--LSITDLQIGSGGTN 188 (476)
T ss_pred ccccHHHHHHhhccceeEEEEeCCCcEEEecCCCccEEEEEEEeecccccCCCccceeeeccCc--ceeEEEEecCCCcc
Confidence 34677778889999999999999999999999999999998642 35677888888 44999998773234
Q ss_pred CeEEEeecCCeEEEEeCCCCCCCCCCeeeeecceeeEEEeeeeeccccccccCCCCcceeeccCCceeeecCCCCCCcee
Q 021291 77 NKVISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDV 156 (314)
Q Consensus 77 ~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (314)
.+++|+|.|.++++||+..+.++. ++.......+ +++
T Consensus 189 ~rl~TaS~D~t~k~wdlS~g~LLl----ti~fp~si~a---------------------------------------v~l 225 (476)
T KOG0646|consen 189 ARLYTASEDRTIKLWDLSLGVLLL----TITFPSSIKA---------------------------------------VAL 225 (476)
T ss_pred ceEEEecCCceEEEEEeccceeeE----EEecCCccee---------------------------------------EEE
Confidence 689999999999999999987643 2222211111 446
Q ss_pred ccCCCceEEEeecCcCeEEEEecCCCce--------eeeecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEee
Q 021291 157 PAEGPKYMAVAGEQLSEVEIWDLNTAER--------CTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGY 228 (314)
Q Consensus 157 ~~~~~~~~~~~g~~d~~i~vwd~~~~~~--------~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~ 228 (314)
+|.+..++ .|+.+|.|.+.++..... .............||..+ ..++|++ ++-| |. +|++|+
T Consensus 226 Dpae~~~y--iGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~--~~ITcLa-is~D---gt-lLlSGd 296 (476)
T KOG0646|consen 226 DPAERVVY--IGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENE--SAITCLA-ISTD---GT-LLLSGD 296 (476)
T ss_pred cccccEEE--ecCCcceEEeeehhcCCcccccccccccccccceeeeeccccCC--cceeEEE-EecC---cc-EEEeeC
Confidence 67766555 577899999887754321 000111111122366542 4778887 8887 44 999999
Q ss_pred cCCcEEEEEccCCCCceEeeecCCcceEEEEEeCCC
Q 021291 229 EDGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESC 264 (314)
Q Consensus 229 ~dg~i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~~ 264 (314)
.||.|.|||+.+ .++++++....++|+.+.+.|-.
T Consensus 297 ~dg~VcvWdi~S-~Q~iRtl~~~kgpVtnL~i~~~~ 331 (476)
T KOG0646|consen 297 EDGKVCVWDIYS-KQCIRTLQTSKGPVTNLQINPLE 331 (476)
T ss_pred CCCCEEEEecch-HHHHHHHhhhccccceeEeeccc
Confidence 999999999998 88888887678899999985543
No 144
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.87 E-value=3.6e-21 Score=153.69 Aligned_cols=200 Identities=19% Similarity=0.313 Sum_probs=160.6
Q ss_pred EecCCCCceeEEEEccCCCEEEEecCCCeEEEEeCCCCeEEEEEeccCCcccEEEEEEcccCCCCeEEEeecCCeEEEEe
Q 021291 13 VLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWD 92 (314)
Q Consensus 13 ~l~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd 92 (314)
.|..-.-.+.+++.+||.+..+++..||.|.|||+.+...++.|++|. +.+.||.+++ +|..|.+|+-|.+|+.||
T Consensus 504 eltssapaCyALa~spDakvcFsccsdGnI~vwDLhnq~~VrqfqGht--DGascIdis~--dGtklWTGGlDntvRcWD 579 (705)
T KOG0639|consen 504 ELTSSAPACYALAISPDAKVCFSCCSDGNIAVWDLHNQTLVRQFQGHT--DGASCIDISK--DGTKLWTGGLDNTVRCWD 579 (705)
T ss_pred hcCCcchhhhhhhcCCccceeeeeccCCcEEEEEcccceeeecccCCC--CCceeEEecC--CCceeecCCCccceeehh
Confidence 444444567889999999999999999999999999999999999999 5599999999 999999999999999999
Q ss_pred CCCCCCCCCCeeeeecceeeEEEeeeeeccccccccCCCCcceeeccCCceeeecCCCCCCceeccCCCceEEEeecCcC
Q 021291 93 IENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQLS 172 (314)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~ 172 (314)
++++....+ +......|+ +..+|.++.++ .|-.++
T Consensus 580 lregrqlqq-------hdF~SQIfS------------------------------------Lg~cP~~dWla--vGMens 614 (705)
T KOG0639|consen 580 LREGRQLQQ-------HDFSSQIFS------------------------------------LGYCPTGDWLA--VGMENS 614 (705)
T ss_pred hhhhhhhhh-------hhhhhhhee------------------------------------cccCCCcccee--eecccC
Confidence 999875442 111112222 34678887654 477788
Q ss_pred eEEEEecCCCceeeeecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEeecCCcEEEEEccCCCCceEeeecCC
Q 021291 173 EVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHL 252 (314)
Q Consensus 173 ~i~vwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~h~ 252 (314)
.+.|......+. ..+. -| .+.+.++. |.+. |+ ++++.+.|..+..|.+.. +..+...+. .
T Consensus 615 ~vevlh~skp~k-yqlh--------lh----eScVLSlK-Fa~c---Gk-wfvStGkDnlLnawrtPy-GasiFqskE-~ 674 (705)
T KOG0639|consen 615 NVEVLHTSKPEK-YQLH--------LH----ESCVLSLK-FAYC---GK-WFVSTGKDNLLNAWRTPY-GASIFQSKE-S 674 (705)
T ss_pred cEEEEecCCccc-eeec--------cc----ccEEEEEE-eccc---Cc-eeeecCchhhhhhccCcc-ccceeeccc-c
Confidence 888887765443 3333 23 66899998 9998 66 999999999999999987 666665553 6
Q ss_pred cceEEEEEeCCCCeEEEecCCCcEEEEec
Q 021291 253 EPVLCLSIDESCNGGISGGADQKIVLYNL 281 (314)
Q Consensus 253 ~~v~~~~~~~~~~~l~s~s~dg~i~iw~~ 281 (314)
+.|.++.++.|.++|+|||.|++..||.+
T Consensus 675 SsVlsCDIS~ddkyIVTGSGdkkATVYeV 703 (705)
T KOG0639|consen 675 SSVLSCDISFDDKYIVTGSGDKKATVYEV 703 (705)
T ss_pred CcceeeeeccCceEEEecCCCcceEEEEE
Confidence 78999999999999999999999998876
No 145
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.86 E-value=6.7e-20 Score=144.80 Aligned_cols=222 Identities=16% Similarity=0.224 Sum_probs=164.1
Q ss_pred CCceeEEEEccCCCEEEEecCCCeEEEEeCCCC--eEEEEEeccCCcccEEEEEEcccCCCC-eEEEeecCCeEEEEeCC
Q 021291 18 RASVTDVCFHQTKPILFAGTTGGELRIWDTVQH--RTVSSSWVHSAAHGIVSVATGPSIGLN-KVISQGRDGTVKCWDIE 94 (314)
Q Consensus 18 ~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~--~~~~~~~~~~~~~~v~~~~~~~~~~~~-~l~s~~~dg~v~iwd~~ 94 (314)
.+.|+++.|+|...+|++|+.||+++||.++.. ..++.+.... .+|.+.+|.| +|. .+++++.-..+..||+.
T Consensus 213 ~~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N~~lqS~~l~~--fPi~~a~f~p--~G~~~i~~s~rrky~ysyDle 288 (514)
T KOG2055|consen 213 HGGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVNPKLQSIHLEK--FPIQKAEFAP--NGHSVIFTSGRRKYLYSYDLE 288 (514)
T ss_pred cCCceEEEecCCCceEEEecCCCcEEEEEecCccChhheeeeecc--CccceeeecC--CCceEEEecccceEEEEeecc
Confidence 468999999999999999999999999998643 3555555555 4599999999 888 89999999999999999
Q ss_pred CCCCCCCCeeeeecceeeEEEeeeeeccccccccCCCCcceeeccCCceeeecCCCCCCceeccCCCceEEEeecCcCeE
Q 021291 95 NGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQLSEV 174 (314)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i 174 (314)
+.+..+ +........... . ...++++++.++ ..| ..|.|
T Consensus 289 ~ak~~k--~~~~~g~e~~~~--e-----------------------------------~FeVShd~~fia-~~G-~~G~I 327 (514)
T KOG2055|consen 289 TAKVTK--LKPPYGVEEKSM--E-----------------------------------RFEVSHDSNFIA-IAG-NNGHI 327 (514)
T ss_pred cccccc--ccCCCCcccchh--h-----------------------------------eeEecCCCCeEE-Ecc-cCceE
Confidence 887543 111111110000 0 044778887544 345 47999
Q ss_pred EEEecCCCceeeeecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEeecCCcEEEEEccCCCCceEeeecCCc-
Q 021291 175 EIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHLE- 253 (314)
Q Consensus 175 ~vwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~h~~- 253 (314)
.+....+++.+.+++ ..+.+..+. |+.+ ++ .|++.+.+|.|++||++. ..+++.+....+
T Consensus 328 ~lLhakT~eli~s~K-------------ieG~v~~~~-fsSd---sk-~l~~~~~~GeV~v~nl~~-~~~~~rf~D~G~v 388 (514)
T KOG2055|consen 328 HLLHAKTKELITSFK-------------IEGVVSDFT-FSSD---SK-ELLASGGTGEVYVWNLRQ-NSCLHRFVDDGSV 388 (514)
T ss_pred Eeehhhhhhhhheee-------------eccEEeeEE-EecC---Cc-EEEEEcCCceEEEEecCC-cceEEEEeecCcc
Confidence 999999999999988 467888887 9976 55 677777889999999998 677777764222
Q ss_pred ceEEEEEeCCCCeEEEecCCCcEEEEecCCC------eeeE-------eeeeeeecCCCceec
Q 021291 254 PVLCLSIDESCNGGISGGADQKIVLYNLDHS------TYVL-------FGIGFVCDQEGNKFG 303 (314)
Q Consensus 254 ~v~~~~~~~~~~~l~s~s~dg~i~iw~~~~~------~~~~-------~~~~~~~~~~~~~~~ 303 (314)
.-++++.+.++.+||+||..|.|.|||.++. +.+. .+..+.+.+++.+++
T Consensus 389 ~gts~~~S~ng~ylA~GS~~GiVNIYd~~s~~~s~~PkPik~~dNLtt~Itsl~Fn~d~qiLA 451 (514)
T KOG2055|consen 389 HGTSLCISLNGSYLATGSDSGIVNIYDGNSCFASTNPKPIKTVDNLTTAITSLQFNHDAQILA 451 (514)
T ss_pred ceeeeeecCCCceEEeccCcceEEEeccchhhccCCCCchhhhhhhheeeeeeeeCcchhhhh
Confidence 3456777899999999999999999996533 2222 244455666665554
No 146
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.86 E-value=1.5e-21 Score=169.52 Aligned_cols=219 Identities=17% Similarity=0.238 Sum_probs=168.4
Q ss_pred CceEEecCCCCceeEEEEcc-CCCEEEEecCCCeEEEEeCCCCeEEEEEeccCCcccEEEEEEcccCCCCeEEEeecCCe
Q 021291 9 DPVAVLRGHRASVTDVCFHQ-TKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGT 87 (314)
Q Consensus 9 ~~~~~l~~h~~~v~~~~~~~-~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~ 87 (314)
..+.+++.|++.|..+.|++ .+++||+|+.||.|.|||+.+-+...........+.|.+++|+.. ..+.|++++.+|.
T Consensus 107 ~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~iWDlnn~~tP~~~~~~~~~~eI~~lsWNrk-vqhILAS~s~sg~ 185 (1049)
T KOG0307|consen 107 EVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEILIWDLNKPETPFTPGSQAPPSEIKCLSWNRK-VSHILASGSPSGR 185 (1049)
T ss_pred HHHhhhcccCCceeeeeccccCCceeeccCCCCcEEEeccCCcCCCCCCCCCCCcccceEeccchh-hhHHhhccCCCCC
Confidence 46778889999999999999 566999999999999999987655544432223356999999974 4478899999999
Q ss_pred EEEEeCCCCCCCCCCeeeeecceeeEEEeeeeeccccccccCCCCcceeeccCCceeeecCCCCCCceeccCCCceEEEe
Q 021291 88 VKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVA 167 (314)
Q Consensus 88 v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (314)
+.|||++..+. ++.+...... +.++. ++|+|++..-++++
T Consensus 186 ~~iWDlr~~~p----ii~ls~~~~~-~~~S~-----------------------------------l~WhP~~aTql~~A 225 (1049)
T KOG0307|consen 186 AVIWDLRKKKP----IIKLSDTPGR-MHCSV-----------------------------------LAWHPDHATQLLVA 225 (1049)
T ss_pred ceeccccCCCc----ccccccCCCc-cceee-----------------------------------eeeCCCCceeeeee
Confidence 99999998754 3344333322 11111 67999987666655
Q ss_pred ecCcC--eEEEEecCCCc-eeeeecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEeecCCcEEEEEccCCCCc
Q 021291 168 GEQLS--EVEIWDLNTAE-RCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIP 244 (314)
Q Consensus 168 g~~d~--~i~vwd~~~~~-~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~ 244 (314)
...|+ .|.+||+|... .++.+. +| ...+.++. |++.++ + ++++++.|+.|.+|+..+ ++.
T Consensus 226 s~dd~~PviqlWDlR~assP~k~~~--------~H----~~Gilsls-Wc~~D~--~-lllSsgkD~~ii~wN~~t-gEv 288 (1049)
T KOG0307|consen 226 SGDDSAPVIQLWDLRFASSPLKILE--------GH----QRGILSLS-WCPQDP--R-LLLSSGKDNRIICWNPNT-GEV 288 (1049)
T ss_pred cCCCCCceeEeecccccCCchhhhc--------cc----ccceeeec-cCCCCc--h-hhhcccCCCCeeEecCCC-ceE
Confidence 44443 69999998544 455555 67 34678887 998733 3 899999999999999999 999
Q ss_pred eEeeecCCcceEEEEEeCCCC-eEEEecCCCcEEEEecCCCe
Q 021291 245 LTAMKVHLEPVLCLSIDESCN-GGISGGADQKIVLYNLDHST 285 (314)
Q Consensus 245 ~~~~~~h~~~v~~~~~~~~~~-~l~s~s~dg~i~iw~~~~~~ 285 (314)
+..+....+++..+.|.|... .++.++.||.|.|+.+....
T Consensus 289 l~~~p~~~nW~fdv~w~pr~P~~~A~asfdgkI~I~sl~~~~ 330 (1049)
T KOG0307|consen 289 LGELPAQGNWCFDVQWCPRNPSVMAAASFDGKISIYSLQGTD 330 (1049)
T ss_pred eeecCCCCcceeeeeecCCCcchhhhheeccceeeeeeecCC
Confidence 999998889999999987665 67888999999999988665
No 147
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.86 E-value=1.5e-19 Score=136.94 Aligned_cols=233 Identities=18% Similarity=0.226 Sum_probs=170.7
Q ss_pred CCceeEEEEc-------cCCCEEEEecCCCeEEEEeCCCCeEEEEEeccCCccc---EEEEEEcccCCCCeEEEeecCCe
Q 021291 18 RASVTDVCFH-------QTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHG---IVSVATGPSIGLNKVISQGRDGT 87 (314)
Q Consensus 18 ~~~v~~~~~~-------~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~---v~~~~~~~~~~~~~l~s~~~dg~ 87 (314)
...|...+|- |+..++|+.+.|.-|++||.-+|+....+++..+.+. ..+++|+| ||.+|++|. ...
T Consensus 104 g~tvydy~wYs~M~s~qP~t~l~a~ssr~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~--DGeqlfaGy-krc 180 (406)
T KOG2919|consen 104 GETVYDYCWYSRMKSDQPSTNLFAVSSRDQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSP--DGEQLFAGY-KRC 180 (406)
T ss_pred CCEEEEEEeeeccccCCCccceeeeccccCceeeeeccccccccchhhhhhHHhhhhheeEEecC--CCCeEeecc-cce
Confidence 3567777775 5667999999999999999999999988876543232 46899999 999998876 569
Q ss_pred EEEEeC-CCCCCCCCCeeeeecc-ee-eEEEeeeeeccccccccCCCCcceeeccCCceeeecCCCCCCceeccCCCceE
Q 021291 88 VKCWDI-ENGGLSSNPSLTIKTN-SY-HFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYM 164 (314)
Q Consensus 88 v~iwd~-~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (314)
|+++|+ +.+.... .+..... .. ....++. ++|+|.....+
T Consensus 181 irvFdt~RpGr~c~--vy~t~~~~k~gq~giisc-----------------------------------~a~sP~~~~~~ 223 (406)
T KOG2919|consen 181 IRVFDTSRPGRDCP--VYTTVTKGKFGQKGIISC-----------------------------------FAFSPMDSKTL 223 (406)
T ss_pred EEEeeccCCCCCCc--chhhhhcccccccceeee-----------------------------------eeccCCCCcce
Confidence 999999 5543221 1111111 00 0000000 56888887677
Q ss_pred EEeecCcCeEEEEecCCCceeeeecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEee-cCCcEEEEEccCCCC
Q 021291 165 AVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGY-EDGSILVWDIRNPGI 243 (314)
Q Consensus 165 ~~~g~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~-~dg~i~vwd~~~~~~ 243 (314)
+ .|+....+-||.-..+.++..+- +| .+-++.+. |.++ |+ .|++|. .|-.|..||+|....
T Consensus 224 a-~gsY~q~~giy~~~~~~pl~llg--------gh----~gGvThL~-~~ed---Gn-~lfsGaRk~dkIl~WDiR~~~~ 285 (406)
T KOG2919|consen 224 A-VGSYGQRVGIYNDDGRRPLQLLG--------GH----GGGVTHLQ-WCED---GN-KLFSGARKDDKILCWDIRYSRD 285 (406)
T ss_pred e-eecccceeeeEecCCCCceeeec--------cc----CCCeeeEE-eccC---cC-eecccccCCCeEEEEeehhccc
Confidence 6 57777889999888888888776 66 55788887 9998 55 566665 477899999999889
Q ss_pred ceEeeecCCc-ceEEEEE--eCCCCeEEEecCCCcEEEEecCC-CeeeE-------eeeeeeecCCCceeceeecc
Q 021291 244 PLTAMKVHLE-PVLCLSI--DESCNGGISGGADQKIVLYNLDH-STYVL-------FGIGFVCDQEGNKFGTTWHI 308 (314)
Q Consensus 244 ~~~~~~~h~~-~v~~~~~--~~~~~~l~s~s~dg~i~iw~~~~-~~~~~-------~~~~~~~~~~~~~~~~~w~~ 308 (314)
++..+..|.+ .-..|-| +|++++|++|+.||.|++||++. +..+. ...+++.+|.-.++++.-.-
T Consensus 286 pv~~L~rhv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~~gn~~sv~~~~sd~vNgvslnP~mpilatssGq 361 (406)
T KOG2919|consen 286 PVYALERHVGDTNQRILFDLDPKGEILASGDTDGSVRVWDLKDLGNEVSVTGNYSDTVNGVSLNPIMPILATSSGQ 361 (406)
T ss_pred hhhhhhhhccCccceEEEecCCCCceeeccCCCccEEEEecCCCCCcccccccccccccceecCcccceeeeccCc
Confidence 9999999877 4455666 79999999999999999999988 43222 35777888887777775443
No 148
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.85 E-value=2e-19 Score=153.09 Aligned_cols=204 Identities=17% Similarity=0.222 Sum_probs=150.5
Q ss_pred EecCCCCceeEEEEccCCCEEEEecCCCeEEEEeCCCCeEEEEEeccCCcccEEEEEEcccCCCCeEEEeecCCeEEEEe
Q 021291 13 VLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWD 92 (314)
Q Consensus 13 ~l~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd 92 (314)
.|...+-++++++|+.+|+++|.||.|-.|++-+..+......+++|..+ |.++.|+| ++++|++.+-||+|++||
T Consensus 91 iL~Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~~~lrgh~ap--Vl~l~~~p--~~~fLAvss~dG~v~iw~ 166 (933)
T KOG1274|consen 91 ILARFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQEKVLRGHDAP--VLQLSYDP--KGNFLAVSSCDGKVQIWD 166 (933)
T ss_pred eeeeeeccceEEEEecCCcEEEeecCceeEEEEeccccchheeecccCCc--eeeeeEcC--CCCEEEEEecCceEEEEE
Confidence 33445678999999999999999999999999999999999999999955 99999999 999999999999999999
Q ss_pred CCCCCCCCCCeeeeecceeeEEEeeeeeccccccccCCCCcceeeccCCceeeecCCCCCCceeccCCCceEEEeecCcC
Q 021291 93 IENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQLS 172 (314)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~ 172 (314)
+.++.+.. .+........... .+. ...++|+|++..+++. +. |+
T Consensus 167 ~~~~~~~~----tl~~v~k~n~~~~-----------------------s~i-------~~~~aW~Pk~g~la~~-~~-d~ 210 (933)
T KOG1274|consen 167 LQDGILSK----TLTGVDKDNEFIL-----------------------SRI-------CTRLAWHPKGGTLAVP-PV-DN 210 (933)
T ss_pred cccchhhh----hcccCCccccccc-----------------------cce-------eeeeeecCCCCeEEee-cc-CC
Confidence 99987644 2111110000000 000 0006799998777653 43 79
Q ss_pred eEEEEecCCCceeeeecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEeecCCcEEEEEccCCCCceEeeecCC
Q 021291 173 EVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHL 252 (314)
Q Consensus 173 ~i~vwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~h~ 252 (314)
.|++|+..+.+....+... + .......++ |+|+ |. |||+++.||.|.|||.++ -.. ....
T Consensus 211 ~Vkvy~r~~we~~f~Lr~~-------~---~ss~~~~~~-wsPn---G~-YiAAs~~~g~I~vWnv~t-~~~----~~~~ 270 (933)
T KOG1274|consen 211 TVKVYSRKGWELQFKLRDK-------L---SSSKFSDLQ-WSPN---GK-YIAASTLDGQILVWNVDT-HER----HEFK 270 (933)
T ss_pred eEEEEccCCceeheeeccc-------c---cccceEEEE-EcCC---Cc-EEeeeccCCcEEEEeccc-chh----cccc
Confidence 9999999999988887742 2 222356666 9999 66 999999999999999996 111 2235
Q ss_pred cceEEEEEeCCCCeEEEecCCCcE
Q 021291 253 EPVLCLSIDESCNGGISGGADQKI 276 (314)
Q Consensus 253 ~~v~~~~~~~~~~~l~s~s~dg~i 276 (314)
..|.+++|.|++.-+-.-...|..
T Consensus 271 ~~Vc~~aw~p~~n~it~~~~~g~~ 294 (933)
T KOG1274|consen 271 RAVCCEAWKPNANAITLITALGTL 294 (933)
T ss_pred ceeEEEecCCCCCeeEEEeecccc
Confidence 689999998887755333333333
No 149
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.85 E-value=2.8e-19 Score=133.47 Aligned_cols=214 Identities=17% Similarity=0.180 Sum_probs=153.3
Q ss_pred CceEEec-CCCCceeEEEEccCCCEEEEecCCCeEEEEeCCCCeE-EEEEeccC---CcccEEEEEEcccCCCCeEEEee
Q 021291 9 DPVAVLR-GHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRT-VSSSWVHS---AAHGIVSVATGPSIGLNKVISQG 83 (314)
Q Consensus 9 ~~~~~l~-~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~-~~~~~~~~---~~~~v~~~~~~~~~~~~~l~s~~ 83 (314)
+.+..|. .|-+.|.|+.|.|++..+++-. |..|.+|+++.+.. .+.+.... .....++-+|+|..+++.+++.+
T Consensus 113 E~v~~Ldteavg~i~cvew~Pns~klasm~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~tt~ 191 (370)
T KOG1007|consen 113 ECVASLDTEAVGKINCVEWEPNSDKLASMD-DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVATTS 191 (370)
T ss_pred hHhhcCCHHHhCceeeEEEcCCCCeeEEec-cCceEEEEcccCcchheeecccccccccceecccccCCCCccceEEEeC
Confidence 4455555 5667999999999999988766 77899999988765 33332211 11337888999977888888866
Q ss_pred cCCeEEEEeCCCCCCCCCCeeeeecceeeEEEeeeeeccccccccCCCCcceeeccCCceeeecCCCCCCceeccCCCce
Q 021291 84 RDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKY 163 (314)
Q Consensus 84 ~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (314)
|+++..||+++..+.. .+..... ..... +.|+|+-+++
T Consensus 192 -d~tl~~~D~RT~~~~~----sI~dAHg-q~vrd------------------------------------lDfNpnkq~~ 229 (370)
T KOG1007|consen 192 -DSTLQFWDLRTMKKNN----SIEDAHG-QRVRD------------------------------------LDFNPNKQHI 229 (370)
T ss_pred -CCcEEEEEccchhhhc----chhhhhc-ceeee------------------------------------ccCCCCceEE
Confidence 7899999999876532 1111100 00001 5688988888
Q ss_pred EEEeecCcCeEEEEecCCCc-eeeeecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEeecCCcEEEEEccCC-
Q 021291 164 MAVAGEQLSEVEIWDLNTAE-RCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNP- 241 (314)
Q Consensus 164 ~~~~g~~d~~i~vwd~~~~~-~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~- 241 (314)
++ +++.||.|++||.|..+ ++..+. +| ...++++. |+|.. .+ ++++|+.|..|.+|.....
T Consensus 230 lv-t~gDdgyvriWD~R~tk~pv~el~--------~H----sHWvW~VR-fn~~h--dq-LiLs~~SDs~V~Lsca~svS 292 (370)
T KOG1007|consen 230 LV-TCGDDGYVRIWDTRKTKFPVQELP--------GH----SHWVWAVR-FNPEH--DQ-LILSGGSDSAVNLSCASSVS 292 (370)
T ss_pred EE-EcCCCccEEEEeccCCCccccccC--------CC----ceEEEEEE-ecCcc--ce-EEEecCCCceeEEEeccccc
Confidence 77 55669999999999654 555565 56 45899998 99973 33 8999999999999965321
Q ss_pred ---------------------------CCceEeeecCCcceEEEEEeC-CCCeEEEecCCCcEEEEecC
Q 021291 242 ---------------------------GIPLTAMKVHLEPVLCLSIDE-SCNGGISGGADQKIVLYNLD 282 (314)
Q Consensus 242 ---------------------------~~~~~~~~~h~~~v~~~~~~~-~~~~l~s~s~dg~i~iw~~~ 282 (314)
...+.++..|.+.|.+++|+. +-=.+|+-|.||.+.|=.+.
T Consensus 293 SE~qi~~~~dese~e~~dseer~kpL~dg~l~tydehEDSVY~~aWSsadPWiFASLSYDGRviIs~V~ 361 (370)
T KOG1007|consen 293 SEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHEDSVYALAWSSADPWIFASLSYDGRVIISSVP 361 (370)
T ss_pred cccccccccccccCcchhhHHhcccccccccccccccccceEEEeeccCCCeeEEEeccCceEEeecCC
Confidence 113456778999999999954 44457999999999887665
No 150
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.84 E-value=7e-19 Score=146.41 Aligned_cols=264 Identities=13% Similarity=0.139 Sum_probs=178.2
Q ss_pred EEecCCCCceeEEEEccC-----------CCEEEEecCCCeEEEEeCCCCeEEEEEe-----------------------
Q 021291 12 AVLRGHRASVTDVCFHQT-----------KPILFAGTTGGELRIWDTVQHRTVSSSW----------------------- 57 (314)
Q Consensus 12 ~~l~~h~~~v~~~~~~~~-----------~~~l~s~~~dg~v~iwd~~~~~~~~~~~----------------------- 57 (314)
..+--|...|+.+.--|- ...+.|++.|++||+||++.+..-..++
T Consensus 363 ~s~lyHS~ciW~Ve~~p~nv~~~~~aclp~~cF~TCSsD~TIRlW~l~~ctnn~vyrRNils~~l~ki~y~d~~~q~~~d 442 (1080)
T KOG1408|consen 363 SSMLYHSACIWDVENLPCNVHSPTAACLPRGCFTTCSSDGTIRLWDLAFCTNNQVYRRNILSANLSKIPYEDSTQQIMHD 442 (1080)
T ss_pred eeeeeccceeeeeccccccccCcccccCCccceeEecCCCcEEEeecccccccceeecccchhhhhcCccccCchhhhhh
Confidence 344458888888776551 1258999999999999987521100000
Q ss_pred ------------ccCCcccEEEEEEcccCCCCeEEEeecCCeEEEEeCCCCCCCCCCeeeeecceeeEEEeeeeec--cc
Q 021291 58 ------------VHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKE--PY 123 (314)
Q Consensus 58 ------------~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~ 123 (314)
.......+.+++.+| ++++|++|..-|+|+|||+...+... .++.+........++...- ..
T Consensus 443 ~~~~~fdka~~s~~d~r~G~R~~~vSp--~gqhLAsGDr~GnlrVy~Lq~l~~~~--~~eAHesEilcLeyS~p~~~~kL 518 (1080)
T KOG1408|consen 443 ASAGIFDKALVSTCDSRFGFRALAVSP--DGQHLASGDRGGNLRVYDLQELEYTC--FMEAHESEILCLEYSFPVLTNKL 518 (1080)
T ss_pred ccCCcccccchhhcCcccceEEEEECC--CcceecccCccCceEEEEehhhhhhh--heecccceeEEEeecCchhhhHh
Confidence 011113589999999 99999999999999999998776533 2333333333333332211 11
Q ss_pred cccccCCCCcceeeccCCceeeecCCCCCC----ceeccCCC-ceEEEeecCcCeEEEEecCCCceeeeecccccCCCCC
Q 021291 124 ANAKQANEPKDCYEREVGETVDTDSLCDSK----DDVPAEGP-KYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPN 198 (314)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~-~~~~~~g~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~ 198 (314)
......+....++++.....+...+.+|.. +.|...|- .-++ +++.|+.|.+--.+.......+.. +
T Consensus 519 LASasrdRlIHV~Dv~rny~l~qtld~HSssITsvKFa~~gln~~Mi-scGADksimFr~~qk~~~g~~f~r-------~ 590 (1080)
T KOG1408|consen 519 LASASRDRLIHVYDVKRNYDLVQTLDGHSSSITSVKFACNGLNRKMI-SCGADKSIMFRVNQKASSGRLFPR-------H 590 (1080)
T ss_pred hhhccCCceEEEEecccccchhhhhcccccceeEEEEeecCCceEEE-eccCchhhheehhccccCceeccc-------c
Confidence 222233344566777777788888888887 66766653 3344 455577665443332222333332 3
Q ss_pred cCCCCCceeeeEEEecCCCCCCceEEEEeecCCcEEEEEccCCCCceEeeec---CCcceEEEEEeCCCCeEEEecCCCc
Q 021291 199 FSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKV---HLEPVLCLSIDESCNGGISGGADQK 275 (314)
Q Consensus 199 h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~---h~~~v~~~~~~~~~~~l~s~s~dg~ 275 (314)
|..-....++.+. ..|.. + ++++++.|..|+|||+.+ ++..+.+++ |.+....+..+|.|.||++.+.|++
T Consensus 591 t~t~~ktTlYDm~-Vdp~~---k-~v~t~cQDrnirif~i~s-gKq~k~FKgs~~~eG~lIKv~lDPSgiY~atScsdkt 664 (1080)
T KOG1408|consen 591 TQTLSKTTLYDMA-VDPTS---K-LVVTVCQDRNIRIFDIES-GKQVKSFKGSRDHEGDLIKVILDPSGIYLATSCSDKT 664 (1080)
T ss_pred ccccccceEEEee-eCCCc---c-eEEEEecccceEEEeccc-cceeeeecccccCCCceEEEEECCCccEEEEeecCCc
Confidence 3333456678887 88873 3 899999999999999998 888888874 5567778889999999999999999
Q ss_pred EEEEecCCCeeeEeeeee
Q 021291 276 IVLYNLDHSTYVLFGIGF 293 (314)
Q Consensus 276 i~iw~~~~~~~~~~~~~~ 293 (314)
+.++|+-+++++.+..||
T Consensus 665 l~~~Df~sgEcvA~m~GH 682 (1080)
T KOG1408|consen 665 LCFVDFVSGECVAQMTGH 682 (1080)
T ss_pred eEEEEeccchhhhhhcCc
Confidence 999999999988764443
No 151
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.84 E-value=1.3e-18 Score=146.81 Aligned_cols=258 Identities=20% Similarity=0.216 Sum_probs=167.7
Q ss_pred CCceEEecCCCCceeEEEEcc-CCCEEEEecCCCeEEEEeCCCCeE--EE--EEeccCCcccEEEEEEcccCCCCeEEEe
Q 021291 8 PDPVAVLRGHRASVTDVCFHQ-TKPILFAGTTGGELRIWDTVQHRT--VS--SSWVHSAAHGIVSVATGPSIGLNKVISQ 82 (314)
Q Consensus 8 ~~~~~~l~~h~~~v~~~~~~~-~~~~l~s~~~dg~v~iwd~~~~~~--~~--~~~~~~~~~~v~~~~~~~~~~~~~l~s~ 82 (314)
..|-..+. -...|+|++|+| +.++|+.|..+|+|.+||+..+.. .. ....+.+..+++.+.|.....+.-|+++
T Consensus 233 ~~Pe~~~~-~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~~~~~~~~f~s~ 311 (555)
T KOG1587|consen 233 NTPELVLE-SPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWLQNEHNTEFFSL 311 (555)
T ss_pred CCceEEEe-cCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEeccCCCCceEEE
Confidence 45555555 467899999999 788999999999999999987654 22 2334455577999999874334569999
Q ss_pred ecCCeEEEEeCCCCCCCCCCee-eeec-----ceeeEEEeeeeecc--ccccccCCCCcceee-ccCCc--ee------e
Q 021291 83 GRDGTVKCWDIENGGLSSNPSL-TIKT-----NSYHFCKLSLVKEP--YANAKQANEPKDCYE-REVGE--TV------D 145 (314)
Q Consensus 83 ~~dg~v~iwd~~~~~~~~~~~~-~~~~-----~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~-~~~~~--~~------~ 145 (314)
+.||.|..|+++.-....+... .... .........+.+.+ ..........+.++. -+.+. .. .
T Consensus 312 ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~~~~~~~~~~~ 391 (555)
T KOG1587|consen 312 SSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYTPAPEVSYKGH 391 (555)
T ss_pred ecCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCCccccccccccc
Confidence 9999999998875443211000 0000 01111111111111 111111111122222 11111 11 1
Q ss_pred ecCCCCCC----ceeccCCCceEEEeecCcCeEEEEecC-CCceeeeecccccCCCCCcCCCCCceeeeEEEecCCCCCC
Q 021291 146 TDSLCDSK----DDVPAEGPKYMAVAGEQLSEVEIWDLN-TAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQG 220 (314)
Q Consensus 146 ~~~~~~~~----~~~~~~~~~~~~~~g~~d~~i~vwd~~-~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g 220 (314)
..+..|.+ +.++|-+..+++++| |-+++||... ...++..+.. + ...+++++ |+|..+.
T Consensus 392 ~~~~~h~g~v~~v~~nPF~~k~fls~g--DW~vriWs~~~~~~Pl~~~~~--------~----~~~v~~va-WSptrpa- 455 (555)
T KOG1587|consen 392 STFITHIGPVYAVSRNPFYPKNFLSVG--DWTVRIWSEDVIASPLLSLDS--------S----PDYVTDVA-WSPTRPA- 455 (555)
T ss_pred ccccccCcceEeeecCCCccceeeeec--cceeEeccccCCCCcchhhhh--------c----cceeeeeE-EcCcCce-
Confidence 12223333 788899988887655 7899999987 5566666652 2 33588887 9998663
Q ss_pred ceEEEEeecCCcEEEEEccC-CCCceEeeecCCcceEEEEEeCCCCeEEEecCCCcEEEEecCCC
Q 021291 221 FVNVLAGYEDGSILVWDIRN-PGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHS 284 (314)
Q Consensus 221 ~~~l~~g~~dg~i~vwd~~~-~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~iw~~~~~ 284 (314)
.|+++..||.|.+||+.. ...|+.+...+....+.+.|+++|+.|+.|...|.+++|++...
T Consensus 456 --vF~~~d~~G~l~iWDLl~~~~~Pv~s~~~~~~~l~~~~~s~~g~~lavGd~~G~~~~~~l~~~ 518 (555)
T KOG1587|consen 456 --VFATVDGDGNLDIWDLLQDDEEPVLSQKVCSPALTRVRWSPNGKLLAVGDANGTTHILKLSES 518 (555)
T ss_pred --EEEEEcCCCceehhhhhccccCCcccccccccccceeecCCCCcEEEEecCCCcEEEEEcCch
Confidence 899999999999999974 24566666666667778888999999999999999999999643
No 152
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.84 E-value=8e-19 Score=133.06 Aligned_cols=231 Identities=16% Similarity=0.204 Sum_probs=161.6
Q ss_pred eeEEEEccCCCEEEEecCCCeEEEEeCCCC------------eEEEEEeccCCcccEEEEEEccc-----CCCCeEEEee
Q 021291 21 VTDVCFHQTKPILFAGTTGGELRIWDTVQH------------RTVSSSWVHSAAHGIVSVATGPS-----IGLNKVISQG 83 (314)
Q Consensus 21 v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~------------~~~~~~~~~~~~~~v~~~~~~~~-----~~~~~l~s~~ 83 (314)
...+.|+|||..|++-+.|..+++|++... +....++...+ ..|...+|-+. ++..++++.+
T Consensus 52 ~kgckWSPDGSciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg-~tvydy~wYs~M~s~qP~t~l~a~ss 130 (406)
T KOG2919|consen 52 LKGCKWSPDGSCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEG-ETVYDYCWYSRMKSDQPSTNLFAVSS 130 (406)
T ss_pred hccceeCCCCceEEeecccCeeeEEecChhhcccCCCCccccccceeEEeccC-CEEEEEEeeeccccCCCccceeeecc
Confidence 346889999999999999999999997531 11122222222 45888888631 2667899999
Q ss_pred cCCeEEEEeCCCCCCCCCCeeeeeccee-eEEEeeeeeccccccccCCCCcceeeccCCceeeecCCCCCCceeccCCCc
Q 021291 84 RDGTVKCWDIENGGLSSNPSLTIKTNSY-HFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPK 162 (314)
Q Consensus 84 ~dg~v~iwd~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (314)
.|.-|++||.-++++.. .+..-.+.. ...+++ ++|+|||+.
T Consensus 131 r~~PIh~wdaftG~lra--Sy~~ydh~de~taAhs------------------------------------L~Fs~DGeq 172 (406)
T KOG2919|consen 131 RDQPIHLWDAFTGKLRA--SYRAYDHQDEYTAAHS------------------------------------LQFSPDGEQ 172 (406)
T ss_pred ccCceeeeecccccccc--chhhhhhHHhhhhhee------------------------------------EEecCCCCe
Confidence 99999999999998644 221111100 000011 679999998
Q ss_pred eEEEeecCcCeEEEEec-CCCceeeeecccccCCCCCc-CCCCCceeeeEEEecCCCCCCceEEEEeecCCcEEEEEccC
Q 021291 163 YMAVAGEQLSEVEIWDL-NTAERCTRLHQNSCGGSPNF-SSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRN 240 (314)
Q Consensus 163 ~~~~~g~~d~~i~vwd~-~~~~~~~~~~~~~~~~~~~h-~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~ 240 (314)
++ +|. .+.|++||+ |.++....+... .+ .....+.+.+++ |+|..+. .+++|+....+-||.-..
T Consensus 173 lf--aGy-krcirvFdt~RpGr~c~vy~t~------~~~k~gq~giisc~a-~sP~~~~---~~a~gsY~q~~giy~~~~ 239 (406)
T KOG2919|consen 173 LF--AGY-KRCIRVFDTSRPGRDCPVYTTV------TKGKFGQKGIISCFA-FSPMDSK---TLAVGSYGQRVGIYNDDG 239 (406)
T ss_pred Ee--ecc-cceEEEeeccCCCCCCcchhhh------hcccccccceeeeee-ccCCCCc---ceeeecccceeeeEecCC
Confidence 87 466 689999999 555532222210 12 223456677776 9998542 799999999999998887
Q ss_pred CCCceEeeecCCcceEEEEEeCCCCeEEEecC-CCcEEEEecCCCeeeEe-----------eeeeeecCCCceece
Q 021291 241 PGIPLTAMKVHLEPVLCLSIDESCNGGISGGA-DQKIVLYNLDHSTYVLF-----------GIGFVCDQEGNKFGT 304 (314)
Q Consensus 241 ~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~-dg~i~iw~~~~~~~~~~-----------~~~~~~~~~~~~~~~ 304 (314)
..++..+.+|.+.|+.+.|.++|+.|++|+. |-.|..||++..+.... -+-|..+|.+..+++
T Consensus 240 -~~pl~llggh~gGvThL~~~edGn~lfsGaRk~dkIl~WDiR~~~~pv~~L~rhv~~TNQRI~FDld~~~~~Las 314 (406)
T KOG2919|consen 240 -RRPLQLLGGHGGGVTHLQWCEDGNKLFSGARKDDKILCWDIRYSRDPVYALERHVGDTNQRILFDLDPKGEILAS 314 (406)
T ss_pred -CCceeeecccCCCeeeEEeccCcCeecccccCCCeEEEEeehhccchhhhhhhhccCccceEEEecCCCCceeec
Confidence 8899999999999999999999999999985 67899999986654331 233556666665543
No 153
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.83 E-value=1.7e-19 Score=141.11 Aligned_cols=206 Identities=18% Similarity=0.224 Sum_probs=144.9
Q ss_pred eEEEEccCCCEEEEecCCCeEEEEeCCCCeEEEEEeccCCcccEEEEEEcccCCCCeEEEeecCCeEEEEeCCCCCCCCC
Q 021291 22 TDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGGLSSN 101 (314)
Q Consensus 22 ~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~ 101 (314)
.+++|+.+|..|++|+.||++|||+......+.....|... |.++.|+| |+++|++.+.| ..+||+.+++..+..
T Consensus 148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~e--V~DL~FS~--dgk~lasig~d-~~~VW~~~~g~~~a~ 222 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTILEEIAHHAE--VKDLDFSP--DGKFLASIGAD-SARVWSVNTGAALAR 222 (398)
T ss_pred eEEEEcCCCCEeeeccccceEEEEecCcchhhhhhHhhcCc--cccceeCC--CCcEEEEecCC-ceEEEEeccCchhhh
Confidence 68999999999999999999999998887777777777744 99999999 99999999999 999999999855441
Q ss_pred CeeeeecceeeEEEeeeeeccccccccCCCCcceeeccCCceeeecCCCCCCceeccCC---CceEEEeecCcCeEEEEe
Q 021291 102 PSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEG---PKYMAVAGEQLSEVEIWD 178 (314)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~g~~d~~i~vwd 178 (314)
..-.-.......|. |+.++ ...+++.-..-+.|+.||
T Consensus 223 ~t~~~k~~~~~~cR----------------------------------------F~~d~~~~~l~laa~~~~~~~v~~~~ 262 (398)
T KOG0771|consen 223 KTPFSKDEMFSSCR----------------------------------------FSVDNAQETLRLAASQFPGGGVRLCD 262 (398)
T ss_pred cCCcccchhhhhce----------------------------------------ecccCCCceEEEEEecCCCCceeEEE
Confidence 11011111112222 33322 223333333345666666
Q ss_pred cCCCceeeeecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEeecCCcEEEEEccCCCCceEeeecCCcceEEE
Q 021291 179 LNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPVLCL 258 (314)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~~ 258 (314)
+.....-..++. .........+.+++ .+++ |+ +++.|+.||.|.|++..+.......-+.|...|+.+
T Consensus 263 ~~~w~~~~~l~~-------~~~~~~~~siSsl~-VS~d---Gk-f~AlGT~dGsVai~~~~~lq~~~~vk~aH~~~VT~l 330 (398)
T KOG0771|consen 263 ISLWSGSNFLRL-------RKKIKRFKSISSLA-VSDD---GK-FLALGTMDGSVAIYDAKSLQRLQYVKEAHLGFVTGL 330 (398)
T ss_pred eeeeccccccch-------hhhhhccCcceeEE-EcCC---Cc-EEEEeccCCcEEEEEeceeeeeEeehhhheeeeeeE
Confidence 553322111110 00000122567776 8887 66 999999999999999998444444455899999999
Q ss_pred EEeCCCCeEEEecCCCcEEEEecCCC
Q 021291 259 SIDESCNGGISGGADQKIVLYNLDHS 284 (314)
Q Consensus 259 ~~~~~~~~l~s~s~dg~i~iw~~~~~ 284 (314)
.|+|+.+++++.+.|....+..+.-.
T Consensus 331 tF~Pdsr~~~svSs~~~~~v~~l~vd 356 (398)
T KOG0771|consen 331 TFSPDSRYLASVSSDNEAAVTKLAVD 356 (398)
T ss_pred EEcCCcCcccccccCCceeEEEEeec
Confidence 99999999999999999999877653
No 154
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.83 E-value=3.6e-19 Score=134.45 Aligned_cols=251 Identities=12% Similarity=0.139 Sum_probs=142.2
Q ss_pred ceEEecCCCCceeEEEEccCCCEEEEecCCCeEEEEeCCCCeEEEEEeccCCcccEEEEEEcccCCCCeEEEeecCCeEE
Q 021291 10 PVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVK 89 (314)
Q Consensus 10 ~~~~l~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~v~ 89 (314)
+-+.|.+|..+|++++||+||+.|+|++.|..|.+||+..|.+++.++.. ++|+...|+|... +.++..-.+..-.
T Consensus 57 iar~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs~l~rirf~---spv~~~q~hp~k~-n~~va~~~~~sp~ 132 (405)
T KOG1273|consen 57 IARMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGSPLKRIRFD---SPVWGAQWHPRKR-NKCVATIMEESPV 132 (405)
T ss_pred hhhhhhccccceeEEEecCCCCEeeeecCCceeEEEeccCCCceeEEEcc---CccceeeeccccC-CeEEEEEecCCcE
Confidence 44577899999999999999999999999999999999999988888754 5578888877533 2222222222222
Q ss_pred EEeCCCCCCCCCCe---eeeec-cee-eEEEeeeeeccccccccCCCCcceeeccCCceeee-cCCCCCC---ceeccCC
Q 021291 90 CWDIENGGLSSNPS---LTIKT-NSY-HFCKLSLVKEPYANAKQANEPKDCYEREVGETVDT-DSLCDSK---DDVPAEG 160 (314)
Q Consensus 90 iwd~~~~~~~~~~~---~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~---~~~~~~~ 160 (314)
+-++..+....-|. ..+.. ... .... ...........+...+++..+.+.... .....+. +.++..|
T Consensus 133 vi~~s~~~h~~Lp~d~d~dln~sas~~~fdr----~g~yIitGtsKGkllv~~a~t~e~vas~rits~~~IK~I~~s~~g 208 (405)
T KOG1273|consen 133 VIDFSDPKHSVLPKDDDGDLNSSASHGVFDR----RGKYIITGTSKGKLLVYDAETLECVASFRITSVQAIKQIIVSRKG 208 (405)
T ss_pred EEEecCCceeeccCCCccccccccccccccC----CCCEEEEecCcceEEEEecchheeeeeeeechheeeeEEEEeccC
Confidence 22222111000000 00000 000 0000 000000011111112222222211110 0000011 5677778
Q ss_pred CceEEEeecCcCeEEEEecCCCce---------eeeecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEeecCC
Q 021291 161 PKYMAVAGEQLSEVEIWDLNTAER---------CTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDG 231 (314)
Q Consensus 161 ~~~~~~~g~~d~~i~vwd~~~~~~---------~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg 231 (314)
+.+++ .+.|+.|+.|+++.-.. .+.+. +-++...+..++|+.+ |.+.+++.....
T Consensus 209 ~~lii--NtsDRvIR~ye~~di~~~~r~~e~e~~~K~q-----------DvVNk~~Wk~ccfs~d---geYv~a~s~~aH 272 (405)
T KOG1273|consen 209 RFLII--NTSDRVIRTYEISDIDDEGRDGEVEPEHKLQ-----------DVVNKLQWKKCCFSGD---GEYVCAGSARAH 272 (405)
T ss_pred cEEEE--ecCCceEEEEehhhhcccCccCCcChhHHHH-----------HHHhhhhhhheeecCC---ccEEEeccccce
Confidence 76653 45589999999873211 11111 0011112222248876 773444445567
Q ss_pred cEEEEEccCCCCceEeeecCC-cceEEEEEeCCCCeEEEecCCCcEEEEecCCCee
Q 021291 232 SILVWDIRNPGIPLTAMKVHL-EPVLCLSIDESCNGGISGGADQKIVLYNLDHSTY 286 (314)
Q Consensus 232 ~i~vwd~~~~~~~~~~~~~h~-~~v~~~~~~~~~~~l~s~s~dg~i~iw~~~~~~~ 286 (314)
.++||.... +.+++.+.|.. .....+.|+|-...+++- ..|.+++|.......
T Consensus 273 aLYIWE~~~-GsLVKILhG~kgE~l~DV~whp~rp~i~si-~sg~v~iw~~~~~en 326 (405)
T KOG1273|consen 273 ALYIWEKSI-GSLVKILHGTKGEELLDVNWHPVRPIIASI-ASGVVYIWAVVQVEN 326 (405)
T ss_pred eEEEEecCC-cceeeeecCCchhheeecccccceeeeeec-cCCceEEEEeecccc
Confidence 799999988 99999999887 678899999998888877 678999998775543
No 155
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.83 E-value=5.4e-19 Score=149.12 Aligned_cols=195 Identities=17% Similarity=0.237 Sum_probs=156.1
Q ss_pred CCceeEEEEccCCCEEEEecCCCeEEEEeCCCCeEEEEE---eccCCcccEEEEEEcccCCCCeEEEeecCCeEEEEeCC
Q 021291 18 RASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSS---WVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIE 94 (314)
Q Consensus 18 ~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~---~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd~~ 94 (314)
...+++++.++.|++.+.|...|.|-+|++..|-...++ ..|.. +|+.++... -++.+++++.+|.+++||..
T Consensus 448 ~~~~~av~vs~CGNF~~IG~S~G~Id~fNmQSGi~r~sf~~~~ah~~--~V~gla~D~--~n~~~vsa~~~Gilkfw~f~ 523 (910)
T KOG1539|consen 448 DINATAVCVSFCGNFVFIGYSKGTIDRFNMQSGIHRKSFGDSPAHKG--EVTGLAVDG--TNRLLVSAGADGILKFWDFK 523 (910)
T ss_pred CcceEEEEEeccCceEEEeccCCeEEEEEcccCeeecccccCccccC--ceeEEEecC--CCceEEEccCcceEEEEecC
Confidence 467899999999999999999999999999999888888 46774 499999987 67899999999999999999
Q ss_pred CCCCCCCCeeeeecceeeEEEeeeeeccccccccCCCCcceeeccCCceeeecCCCCCCceeccCCCceEEEeecCcCeE
Q 021291 95 NGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQLSEV 174 (314)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i 174 (314)
...+.. .+.......+ +..+.... +++ .+..|-.|
T Consensus 524 ~k~l~~----~l~l~~~~~~---------------------------------------iv~hr~s~-l~a-~~~ddf~I 558 (910)
T KOG1539|consen 524 KKVLKK----SLRLGSSITG---------------------------------------IVYHRVSD-LLA-IALDDFSI 558 (910)
T ss_pred Ccceee----eeccCCCcce---------------------------------------eeeeehhh-hhh-hhcCceeE
Confidence 876433 2211111111 11222222 333 34457899
Q ss_pred EEEecCCCceeeeecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEeecCCcEEEEEccCCCCceEeeecCCcc
Q 021291 175 EIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHLEP 254 (314)
Q Consensus 175 ~vwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~h~~~ 254 (314)
+++|..+.+.++.|. ||.+ .++++. |+|| |+ +|++++.|++|++||+.+ +.++-.+. -..+
T Consensus 559 ~vvD~~t~kvvR~f~--------gh~n----ritd~~-FS~D---gr-WlisasmD~tIr~wDlpt-~~lID~~~-vd~~ 619 (910)
T KOG1539|consen 559 RVVDVVTRKVVREFW--------GHGN----RITDMT-FSPD---GR-WLISASMDSTIRTWDLPT-GTLIDGLL-VDSP 619 (910)
T ss_pred EEEEchhhhhhHHhh--------cccc----ceeeeE-eCCC---Cc-EEEEeecCCcEEEEeccC-cceeeeEe-cCCc
Confidence 999999999999998 8855 677777 9998 66 999999999999999998 77776665 3678
Q ss_pred eEEEEEeCCCCeEEEecCC-CcEEEEe
Q 021291 255 VLCLSIDESCNGGISGGAD-QKIVLYN 280 (314)
Q Consensus 255 v~~~~~~~~~~~l~s~s~d-g~i~iw~ 280 (314)
.+++.|+|+|.+|||...| .-|++|.
T Consensus 620 ~~sls~SPngD~LAT~Hvd~~gIylWs 646 (910)
T KOG1539|consen 620 CTSLSFSPNGDFLATVHVDQNGIYLWS 646 (910)
T ss_pred ceeeEECCCCCEEEEEEecCceEEEEE
Confidence 9999999999999999988 5699995
No 156
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.83 E-value=3.2e-18 Score=141.79 Aligned_cols=260 Identities=15% Similarity=0.164 Sum_probs=171.8
Q ss_pred CceEEecCCCCceeEEEEccCCC---EEEEecCCCeEEEEeCCCC--eEEEEEeccCCcccEEEEEEcccCCCCeEEEee
Q 021291 9 DPVAVLRGHRASVTDVCFHQTKP---ILFAGTTGGELRIWDTVQH--RTVSSSWVHSAAHGIVSVATGPSIGLNKVISQG 83 (314)
Q Consensus 9 ~~~~~l~~h~~~v~~~~~~~~~~---~l~s~~~dg~v~iwd~~~~--~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~ 83 (314)
..+..++||.++|+|+.|-|+.+ ++++|+.|+.|.+|.++.. .++..+++|. +.++++.. ........+
T Consensus 45 ~i~t~l~GH~a~VnC~~~l~~s~~~a~~vsG~sD~~v~lW~l~~~~~~~i~~~~g~~----~~~~cv~a--~~~~~~~~~ 118 (764)
T KOG1063|consen 45 LIVTTLDGHVARVNCVHWLPTSEIVAEMVSGDSDGRVILWKLRDEYLIKIYTIQGHC----KECVCVVA--RSSVMTCKA 118 (764)
T ss_pred eeEEeccCCccceEEEEEcccccccceEEEccCCCcEEEEEEeehheEEEEeecCcc----eeEEEEEe--eeeEEEeec
Confidence 35778999999999999999776 8999999999999999843 3455666655 45555554 323333347
Q ss_pred cCCeEEEEeCCCCCCCCCCeeeeecceeeEEEeeeeeccccccccCCCCcceeeccCCc----eeeecCCCCCC----ce
Q 021291 84 RDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGE----TVDTDSLCDSK----DD 155 (314)
Q Consensus 84 ~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~----~~ 155 (314)
.|+++.+||.+..+......+.+.........++....+.....+.++......+.... .....+.+|.+ ++
T Consensus 119 ad~~v~vw~~~~~e~~~~~~~rf~~k~~ipLcL~~~~~~~~~lla~Ggs~~~v~~~s~~~d~f~~v~el~GH~DWIrsl~ 198 (764)
T KOG1063|consen 119 ADGTVSVWDKQQDEVFLLAVLRFEIKEAIPLCLAALKNNKTFLLACGGSKFVVDLYSSSADSFARVAELEGHTDWIRSLA 198 (764)
T ss_pred cCceEEEeecCCCceeeehheehhhhhHhhHHHhhhccCCcEEEEecCcceEEEEeccCCcceeEEEEeeccchhhhhhh
Confidence 89999999996555211112222222221222233333344455555555555554333 45567889988 88
Q ss_pred eccCCC-ceEEEeecCcCeEEEEecCCCceee---------------------ee--cccccCCCCCcCCCCCceeeeEE
Q 021291 156 VPAEGP-KYMAVAGEQLSEVEIWDLNTAERCT---------------------RL--HQNSCGGSPNFSSKGRGMCMAVQ 211 (314)
Q Consensus 156 ~~~~~~-~~~~~~g~~d~~i~vwd~~~~~~~~---------------------~~--~~~~~~~~~~h~~~~~~~~~~~~ 211 (314)
|...+. .+++++++.|..|+||.+.-+.... .+ ......-..|| ...++++.
T Consensus 199 f~~~~~~~~~laS~SQD~yIRiW~i~~~~~~~~~~~e~~~t~~~~~~~f~~l~~i~~~is~eall~GH----eDWV~sv~ 274 (764)
T KOG1063|consen 199 FARLGGDDLLLASSSQDRYIRIWRIVLGDDEDSNEREDSLTTLSNLPVFMILEEIQYRISFEALLMGH----EDWVYSVW 274 (764)
T ss_pred hhccCCCcEEEEecCCceEEEEEEEEecCCccccccccccccccCCceeeeeeeEEEEEehhhhhcCc----ccceEEEE
Confidence 886655 7777899999999999875332100 00 00000111256 55889998
Q ss_pred EecCCCCCCceEEEEeecCCcEEEEEccCC-C-----CceEeeecCCcceEEEEEeCCCCeEEEecCCCcEEEEecCC
Q 021291 212 AYLPSKSQGFVNVLAGYEDGSILVWDIRNP-G-----IPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDH 283 (314)
Q Consensus 212 ~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~-~-----~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~iw~~~~ 283 (314)
|+|. +. .|++++.|.++.+|.-... + -.+..+.+......+.-|+|++..+++-+.-|-.++|....
T Consensus 275 -W~p~---~~-~LLSASaDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~n~~~ii~~g~~Gg~hlWkt~d 347 (764)
T KOG1063|consen 275 -WHPE---GL-DLLSASADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSPNSNVIIAHGRTGGFHLWKTKD 347 (764)
T ss_pred -Eccc---hh-hheecccCcceEEEecCCccceEEEEEEeecccccccceeeEEEcCCCCEEEEecccCcEEEEeccC
Confidence 9998 54 7999999999999987652 1 12233444455688999999999999999999999999433
No 157
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.83 E-value=5.4e-19 Score=146.09 Aligned_cols=238 Identities=15% Similarity=0.185 Sum_probs=161.3
Q ss_pred ceeEEEEccCCCEEEEecCCCeEEEEeCCCCeEEEEEeccCCcccEEEEEEcccCCCCeEEEeecCCeEEEEeCCCCCCC
Q 021291 20 SVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGGLS 99 (314)
Q Consensus 20 ~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~ 99 (314)
.|..++|.|||..|+.+..| .+.+||..+|..++++++|... |.|++|+. ||+.|++|+.|..|.+|+..-....
T Consensus 14 ci~d~afkPDGsqL~lAAg~-rlliyD~ndG~llqtLKgHKDt--VycVAys~--dGkrFASG~aDK~VI~W~~klEG~L 88 (1081)
T KOG1538|consen 14 CINDIAFKPDGTQLILAAGS-RLLVYDTSDGTLLQPLKGHKDT--VYCVAYAK--DGKRFASGSADKSVIIWTSKLEGIL 88 (1081)
T ss_pred chheeEECCCCceEEEecCC-EEEEEeCCCcccccccccccce--EEEEEEcc--CCceeccCCCceeEEEeccccccee
Confidence 79999999999988877665 6999999999999999999955 99999999 9999999999999999987644322
Q ss_pred CCCeeeeecceeeEEEeeeeeccccccccCCCCcceeeccCCceeeecCCCCCC-ceeccCCCceEEEeecCcCeEEEEe
Q 021291 100 SNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSK-DDVPAEGPKYMAVAGEQLSEVEIWD 178 (314)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~g~~d~~i~vwd 178 (314)
+ -.+........|++......... -+....|...............-. .+|..||++++ -|-.||+|.+-+
T Consensus 89 k----YSH~D~IQCMsFNP~~h~LasCs--LsdFglWS~~qK~V~K~kss~R~~~CsWtnDGqyla--lG~~nGTIsiRN 160 (1081)
T KOG1538|consen 89 K----YSHNDAIQCMSFNPITHQLASCS--LSDFGLWSPEQKSVSKHKSSSRIICCSWTNDGQYLA--LGMFNGTISIRN 160 (1081)
T ss_pred e----eccCCeeeEeecCchHHHhhhcc--hhhccccChhhhhHHhhhhheeEEEeeecCCCcEEE--EeccCceEEeec
Confidence 1 23344445555555443332221 122223332222111111111111 78999998765 477789999886
Q ss_pred cCCCceeeeecccccCCCCCcCCCCCceeeeEEEecCCC-----------------------------------------
Q 021291 179 LNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSK----------------------------------------- 217 (314)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~----------------------------------------- 217 (314)
- +++....+..+ ...+..+++++ |+|..
T Consensus 161 k-~gEek~~I~Rp---------gg~Nspiwsi~-~~p~sg~G~~di~aV~DW~qTLSFy~LsG~~Igk~r~L~FdP~Cis 229 (1081)
T KOG1538|consen 161 K-NGEEKVKIERP---------GGSNSPIWSIC-WNPSSGEGRNDILAVADWGQTLSFYQLSGKQIGKDRALNFDPCCIS 229 (1081)
T ss_pred C-CCCcceEEeCC---------CCCCCCceEEE-ecCCCCCCccceEEEEeccceeEEEEecceeecccccCCCCchhhe
Confidence 4 34433333321 11233444444 44431
Q ss_pred --CCCceEEEEeecCCcEEEEEccCCCCceEeeecCCcceEEEEEeCCCCeEEEecCCCcEEEEecCCC
Q 021291 218 --SQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHS 284 (314)
Q Consensus 218 --~~g~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~iw~~~~~ 284 (314)
++|+ +++.|+.|+.+++|.-+ +..+.++.....+|+.++..|++++++.|+.||+|..|++-..
T Consensus 230 Yf~NGE-y~LiGGsdk~L~~fTR~--GvrLGTvg~~D~WIWtV~~~PNsQ~v~~GCqDGTiACyNl~fS 295 (1081)
T KOG1538|consen 230 YFTNGE-YILLGGSDKQLSLFTRD--GVRLGTVGEQDSWIWTVQAKPNSQYVVVGCQDGTIACYNLIFS 295 (1081)
T ss_pred eccCCc-EEEEccCCCceEEEeec--CeEEeeccccceeEEEEEEccCCceEEEEEccCeeehhhhHHh
Confidence 1155 67777788888887654 6667777777789999999999999999999999999987543
No 158
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.83 E-value=2.8e-19 Score=133.59 Aligned_cols=211 Identities=18% Similarity=0.223 Sum_probs=148.3
Q ss_pred CCCCceeEEEEccCC-----CEEEEecCCCeEEEEeCCCC--eE--EEEE---eccCCcccEEEEEEcccCCCCeEEEee
Q 021291 16 GHRASVTDVCFHQTK-----PILFAGTTGGELRIWDTVQH--RT--VSSS---WVHSAAHGIVSVATGPSIGLNKVISQG 83 (314)
Q Consensus 16 ~h~~~v~~~~~~~~~-----~~l~s~~~dg~v~iwd~~~~--~~--~~~~---~~~~~~~~v~~~~~~~~~~~~~l~s~~ 83 (314)
.|.-+++.+.|.|+. ++|||.+ | .+|+|.+... +. ...+ +.....+++++..|+.. +.+++.++|
T Consensus 94 d~~YP~tK~~wiPd~~g~~pdlLATs~-D-~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~-dp~~igtSS 170 (364)
T KOG0290|consen 94 DHPYPVTKLMWIPDSKGVYPDLLATSS-D-FLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEV-DPNLIGTSS 170 (364)
T ss_pred CCCCCccceEecCCccccCcchhhccc-C-eEEEEeccCcCCceehhhhhccCcccccCCcccccccccC-CcceeEeec
Confidence 478899999999965 3566654 3 6999998742 21 1112 11222357999999875 668999999
Q ss_pred cCCeEEEEeCCCCCC--CCCCeeeeecceeeEEEeeeeeccccccccCCCCcceeeccCCceeeecCCCCCCceeccCCC
Q 021291 84 RDGTVKCWDIENGGL--SSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGP 161 (314)
Q Consensus 84 ~dg~v~iwd~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (314)
-|-+..|||++++.. ++. .+..+...... ++|...+.
T Consensus 171 iDTTCTiWdie~~~~~~vkT-QLIAHDKEV~D----------------------------------------Iaf~~~s~ 209 (364)
T KOG0290|consen 171 IDTTCTIWDIETGVSGTVKT-QLIAHDKEVYD----------------------------------------IAFLKGSR 209 (364)
T ss_pred ccCeEEEEEEeeccccceee-EEEecCcceeE----------------------------------------EEeccCcc
Confidence 999999999998722 111 00111111110 56878777
Q ss_pred ceEEEeecCcCeEEEEecCCCceeeeecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEeecC-CcEEEEEccC
Q 021291 162 KYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYED-GSILVWDIRN 240 (314)
Q Consensus 162 ~~~~~~g~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~d-g~i~vwd~~~ 240 (314)
.+++..| .||.|++||+|..+....+-. . .........+. |++.++. ++|+-..| ..|.|.|+|.
T Consensus 210 ~~FASvg-aDGSvRmFDLR~leHSTIIYE-------~--p~~~~pLlRLs-wnkqDpn---ymATf~~dS~~V~iLDiR~ 275 (364)
T KOG0290|consen 210 DVFASVG-ADGSVRMFDLRSLEHSTIIYE-------D--PSPSTPLLRLS-WNKQDPN---YMATFAMDSNKVVILDIRV 275 (364)
T ss_pred ceEEEec-CCCcEEEEEecccccceEEec-------C--CCCCCcceeec-cCcCCch---HHhhhhcCCceEEEEEecC
Confidence 7887555 499999999998776544431 0 11134566666 8776442 77765554 4699999999
Q ss_pred CCCceEeeecCCcceEEEEEeCCC-CeEEEecCCCcEEEEecCCC
Q 021291 241 PGIPLTAMKVHLEPVLCLSIDESC-NGGISGGADQKIVLYNLDHS 284 (314)
Q Consensus 241 ~~~~~~~~~~h~~~v~~~~~~~~~-~~l~s~s~dg~i~iw~~~~~ 284 (314)
+..++..+.+|.+.|+.++|.|.. ..|+|++.|..+.+||+..-
T Consensus 276 P~tpva~L~~H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q~ 320 (364)
T KOG0290|consen 276 PCTPVARLRNHQASVNGIAWAPHSSSHICTAGDDCQALIWDLQQM 320 (364)
T ss_pred CCcceehhhcCcccccceEecCCCCceeeecCCcceEEEEecccc
Confidence 999999999999999999997754 57999999999999999754
No 159
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.83 E-value=2.6e-18 Score=133.88 Aligned_cols=254 Identities=18% Similarity=0.234 Sum_probs=154.9
Q ss_pred ceEEecCCCCceeEEEEccCCCEEEEecCCCeEEEEeCC--------C--------CeEEEEEeccCCcccEEEEEEccc
Q 021291 10 PVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTV--------Q--------HRTVSSSWVHSAAHGIVSVATGPS 73 (314)
Q Consensus 10 ~~~~l~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~--------~--------~~~~~~~~~~~~~~~v~~~~~~~~ 73 (314)
.+..|..|..+|+++.|+|+|.+||+|+.+|.|.+|... + ......+.+|... |+.++|+|
T Consensus 57 y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~d--iydL~Ws~- 133 (434)
T KOG1009|consen 57 YLSSLSRHTRAVNVVRFSPDGELLASGGDGGEVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDD--IYDLAWSP- 133 (434)
T ss_pred EeecccCCcceeEEEEEcCCcCeeeecCCCceEEEEEecCcCCccccchhhhCccceEEEEEecccccc--hhhhhccC-
Confidence 466788999999999999999999999999999999765 2 1234566778755 99999999
Q ss_pred CCCCeEEEeecCCeEEEEeCCCCCCCCCCeeeeecceeeEEEeeeeeccccccccCCCCcceeeccCC------------
Q 021291 74 IGLNKVISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVG------------ 141 (314)
Q Consensus 74 ~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------ 141 (314)
++.++++++.|.++++||+..+.+.. ...-+.+......+.+............ ....+.+...
T Consensus 134 -d~~~l~s~s~dns~~l~Dv~~G~l~~--~~~dh~~yvqgvawDpl~qyv~s~s~dr-~~~~~~~~~~~~~~~~~~~~m~ 209 (434)
T KOG1009|consen 134 -DSNFLVSGSVDNSVRLWDVHAGQLLA--ILDDHEHYVQGVAWDPLNQYVASKSSDR-HPEGFSAKLKQVIKRHGLDIMP 209 (434)
T ss_pred -CCceeeeeeccceEEEEEeccceeEe--eccccccccceeecchhhhhhhhhccCc-ccceeeeeeeeeeeeeeeeEee
Confidence 99999999999999999999997654 3333333333333333322222111111 0011100000
Q ss_pred -------ceeeecCCCCCC--------ceeccCCCceEEEeecC--c-----CeEEEEecCCC-ceeeeecccccCCCCC
Q 021291 142 -------ETVDTDSLCDSK--------DDVPAEGPKYMAVAGEQ--L-----SEVEIWDLNTA-ERCTRLHQNSCGGSPN 198 (314)
Q Consensus 142 -------~~~~~~~~~~~~--------~~~~~~~~~~~~~~g~~--d-----~~i~vwd~~~~-~~~~~~~~~~~~~~~~ 198 (314)
...... .-|.. ++|+|+|..++.-+|.. + +..++|+-... ++...++
T Consensus 210 ~~~~~~~e~~s~r-LfhDeTlksFFrRlsfTPdG~llvtPag~~~~g~~~~~n~tYvfsrk~l~rP~~~lp--------- 279 (434)
T KOG1009|consen 210 AKAFNEREGKSTR-LFHDETLKSFFRRLSFTPDGSLLVTPAGLFKVGGGVFRNTSYVFSRKDLKRPAARLP--------- 279 (434)
T ss_pred ecccCCCCcceee-eeecCchhhhhhhcccCCCCcEEEcccceeeeCCceeeceeEeeccccccCceeecC---------
Confidence 000000 11111 88999997554322210 1 12334433221 1222222
Q ss_pred cCCCCCceeeeEEEecCC-------CCC-------CceEEEEeecCCcEEEEEccCCCCceEee-ecCCcceEEEEEeCC
Q 021291 199 FSSKGRGMCMAVQAYLPS-------KSQ-------GFVNVLAGYEDGSILVWDIRNPGIPLTAM-KVHLEPVLCLSIDES 263 (314)
Q Consensus 199 h~~~~~~~~~~~~~~~p~-------~~~-------g~~~l~~g~~dg~i~vwd~~~~~~~~~~~-~~h~~~v~~~~~~~~ 263 (314)
...-....+. |+|- ... -+..++.++. ..|++||.++ -.|+... .-|-.+|++++|+++
T Consensus 280 ---~~~k~~lavr-~~pVy~elrp~~~~~~~~~lpyrlvfaiAt~-~svyvydtq~-~~P~~~v~nihy~~iTDiaws~d 353 (434)
T KOG1009|consen 280 ---SPKKPALAVR-FSPVYYELRPLSSEKFLFVLPYRLVFAIATK-NSVYVYDTQT-LEPLAVVDNIHYSAITDIAWSDD 353 (434)
T ss_pred ---CCCcceEEEE-eeeeEEEeccccccccccccccceEEEEeec-ceEEEecccc-ccceEEEeeeeeeeecceeecCC
Confidence 1122333333 3331 000 1224555554 5899999998 5555544 468899999999999
Q ss_pred CCeEEEecCCCcEEEEecCCCee
Q 021291 264 CNGGISGGADQKIVLYNLDHSTY 286 (314)
Q Consensus 264 ~~~l~s~s~dg~i~iw~~~~~~~ 286 (314)
|..|+..|.||...+-.++..+.
T Consensus 354 g~~l~vSS~DGyCS~vtfe~~el 376 (434)
T KOG1009|consen 354 GSVLLVSSTDGFCSLVTFEPWEL 376 (434)
T ss_pred CcEEEEeccCCceEEEEEcchhc
Confidence 99999999999988877776543
No 160
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.82 E-value=1.1e-18 Score=133.07 Aligned_cols=198 Identities=18% Similarity=0.249 Sum_probs=144.1
Q ss_pred CEEEEecCCCeEEEEeCCCCeEEEEEeccCCcccEEEEEEcccCCCCeEEEeecCCeEEEEeCCCCCCCCCCeeeeecce
Q 021291 31 PILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGGLSSNPSLTIKTNS 110 (314)
Q Consensus 31 ~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~ 110 (314)
+.+|++-..|.|++||..+++.+..++++... +..+.|......+.+.+|+.||+|++||++...... .+.....+
T Consensus 41 ~~vav~lSngsv~lyd~~tg~~l~~fk~~~~~--~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a--~~~~~~~~ 116 (376)
T KOG1188|consen 41 TAVAVSLSNGSVRLYDKGTGQLLEEFKGPPAT--TNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESA--RISWTQQS 116 (376)
T ss_pred eeEEEEecCCeEEEEeccchhhhheecCCCCc--ccceEEecCCCCCeeEEeccCCeEEEEEeecchhhh--heeccCCC
Confidence 46888999999999999999999999999855 888998763345788999999999999999876543 22222222
Q ss_pred -eeEEEeeeeeccccccccCCCCcceeeccCCceeeecCCCCCCceeccC-CCceEEEeecC----cCeEEEEecCCCce
Q 021291 111 -YHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAE-GPKYMAVAGEQ----LSEVEIWDLNTAER 184 (314)
Q Consensus 111 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~g~~----d~~i~vwd~~~~~~ 184 (314)
... ++|.-+ ..++++ +|.. |-.|.+||+|..+.
T Consensus 117 ~~~f----------------------------------------~~ld~nck~~ii~-~GtE~~~s~A~v~lwDvR~~qq 155 (376)
T KOG1188|consen 117 GTPF----------------------------------------ICLDLNCKKNIIA-CGTELTRSDASVVLWDVRSEQQ 155 (376)
T ss_pred CCcc----------------------------------------eEeeccCcCCeEE-eccccccCceEEEEEEeccccc
Confidence 011 112221 123333 4432 56799999998776
Q ss_pred -eeeecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEeecCCcEEEEEccCCCC--ceEeeecCCcceEEEEEe
Q 021291 185 -CTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGI--PLTAMKVHLEPVLCLSID 261 (314)
Q Consensus 185 -~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~--~~~~~~~h~~~v~~~~~~ 261 (314)
+..+.. .| ..-++++. |+|..++ +|++|+.||.|.|||+....+ .+...-.|...|..+.|.
T Consensus 156 ~l~~~~e-------SH----~DDVT~lr-FHP~~pn---lLlSGSvDGLvnlfD~~~d~EeDaL~~viN~~sSI~~igw~ 220 (376)
T KOG1188|consen 156 LLRQLNE-------SH----NDDVTQLR-FHPSDPN---LLLSGSVDGLVNLFDTKKDNEEDALLHVINHGSSIHLIGWL 220 (376)
T ss_pred hhhhhhh-------hc----cCcceeEE-ecCCCCC---eEEeecccceEEeeecCCCcchhhHHHhhcccceeeeeeee
Confidence 555553 56 44678887 9998664 999999999999999985322 233333577889999996
Q ss_pred CCC-CeEEEecCCCcEEEEecCCCeeeE
Q 021291 262 ESC-NGGISGGADQKIVLYNLDHSTYVL 288 (314)
Q Consensus 262 ~~~-~~l~s~s~dg~i~iw~~~~~~~~~ 288 (314)
.++ +.|.+-+......+|+++.+....
T Consensus 221 ~~~ykrI~clTH~Etf~~~ele~~~~~~ 248 (376)
T KOG1188|consen 221 SKKYKRIMCLTHMETFAIYELEDGSEET 248 (376)
T ss_pred cCCcceEEEEEccCceeEEEccCCChhh
Confidence 655 558888999999999999887543
No 161
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.81 E-value=1.2e-17 Score=133.80 Aligned_cols=209 Identities=22% Similarity=0.386 Sum_probs=158.3
Q ss_pred ceEEecCCCCceeEEEEccCCCEEEEecCCC--------eEEEEeCCCCeEEEEEeccCCcccEEEEEEcccCCCCeEEE
Q 021291 10 PVAVLRGHRASVTDVCFHQTKPILFAGTTGG--------ELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVIS 81 (314)
Q Consensus 10 ~~~~l~~h~~~v~~~~~~~~~~~l~s~~~dg--------~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s 81 (314)
..+.+.||+..|.|++.+||.-.+++|-.-| .+++||..+-..+..+.... ..|.|++|++.+.|.+|+.
T Consensus 96 ~Qr~y~GH~ddikc~~vHPdri~vatGQ~ag~~g~~~~phvriWdsv~L~TL~V~g~f~--~GV~~vaFsk~~~G~~l~~ 173 (626)
T KOG2106|consen 96 SQRHYLGHNDDIKCMAVHPDRIRVATGQGAGTSGRPLQPHVRIWDSVTLSTLHVIGFFD--RGVTCVAFSKINGGSLLCA 173 (626)
T ss_pred hcccccCCCCceEEEeecCCceeeccCcccccCCCcCCCeeeecccccceeeeeecccc--ccceeeeecccCCCceEEE
Confidence 3455679999999999999998888876555 49999988877777776544 5599999999766777666
Q ss_pred e--ecCCeEEEEeCCCCCCCCCCeeeeec-ceeeEEEeeeeeccccccccCCCCcceeeccCCceeeecCCCCCCceecc
Q 021291 82 Q--GRDGTVKCWDIENGGLSSNPSLTIKT-NSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPA 158 (314)
Q Consensus 82 ~--~~dg~v~iwd~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (314)
. +.+..+.+||...+.... ..+. +..... ..|+|
T Consensus 174 vD~s~~h~lSVWdWqk~~~~~----~vk~sne~v~~---------------------------------------a~FHP 210 (626)
T KOG2106|consen 174 VDDSNPHMLSVWDWQKKAKLG----PVKTSNEVVFL---------------------------------------ATFHP 210 (626)
T ss_pred ecCCCccccchhhchhhhccC----cceeccceEEE---------------------------------------EEecc
Confidence 5 346679999998765433 1111 111111 45899
Q ss_pred CCCceEEEeecCcCeEEEEecCCCceeeeecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEeecCCcEEEEEc
Q 021291 159 EGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDI 238 (314)
Q Consensus 159 ~~~~~~~~~g~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~ 238 (314)
.+.++++..|- +.+.+|+++.+....+.. -.....+..+.+++ |.++ |. +++|..+|.|.||+.
T Consensus 211 td~nliit~Gk--~H~~Fw~~~~~~l~k~~~--------~fek~ekk~Vl~v~-F~en---gd--viTgDS~G~i~Iw~~ 274 (626)
T KOG2106|consen 211 TDPNLIITCGK--GHLYFWTLRGGSLVKRQG--------IFEKREKKFVLCVT-FLEN---GD--VITGDSGGNILIWSK 274 (626)
T ss_pred CCCcEEEEeCC--ceEEEEEccCCceEEEee--------ccccccceEEEEEE-EcCC---CC--EEeecCCceEEEEeC
Confidence 99998876553 899999999887655433 12222346789998 9998 53 999999999999999
Q ss_pred cCCCCceEeeecCCcceEEEEEeCCCCeEEEecCCCcEEEEec
Q 021291 239 RNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNL 281 (314)
Q Consensus 239 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~iw~~ 281 (314)
.. .+..+...+|.+.|.+++.-.+|. |+||+.|..|..||-
T Consensus 275 ~~-~~~~k~~~aH~ggv~~L~~lr~Gt-llSGgKDRki~~Wd~ 315 (626)
T KOG2106|consen 275 GT-NRISKQVHAHDGGVFSLCMLRDGT-LLSGGKDRKIILWDD 315 (626)
T ss_pred CC-ceEEeEeeecCCceEEEEEecCcc-EeecCccceEEeccc
Confidence 87 666666669999999999999997 556999999999983
No 162
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.81 E-value=1.3e-18 Score=144.11 Aligned_cols=217 Identities=20% Similarity=0.257 Sum_probs=154.9
Q ss_pred ceEEecCCCCceeEEEEccCCCEEEEecCC-----CeEEEEeCCCCeEEEEEeccCCcccEEEEEEcccCCCCeEEEeec
Q 021291 10 PVAVLRGHRASVTDVCFHQTKPILFAGTTG-----GELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGR 84 (314)
Q Consensus 10 ~~~~l~~h~~~v~~~~~~~~~~~l~s~~~d-----g~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~ 84 (314)
.++.|.||.-.|.|++.+|+|+++||++.. ..|++|+..+-...+.+.+|.-. |+.|+|+| |+++|++++.
T Consensus 517 Ev~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~~~~L~~HsLT--VT~l~FSp--dg~~LLsvsR 592 (764)
T KOG1063|consen 517 EVHKLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANWLQVQELEGHSLT--VTRLAFSP--DGRYLLSVSR 592 (764)
T ss_pred hhHHhccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccchhhhheecccceE--EEEEEECC--CCcEEEEeec
Confidence 356678999999999999999999999764 36999999988888889999855 99999999 9999999999
Q ss_pred CCeEEEEeCCCCCCCCCCeeeeeccee-eEEEeeeeeccccccccCCCCcceeeccCCceeeecCCCCCCceeccCCCce
Q 021291 85 DGTVKCWDIENGGLSSNPSLTIKTNSY-HFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKY 163 (314)
Q Consensus 85 dg~v~iwd~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (314)
|+++.+|........ .+.+..... .-..+. .+|+|++.++
T Consensus 593 DRt~sl~~~~~~~~~---e~~fa~~k~HtRIIWd------------------------------------csW~pde~~F 633 (764)
T KOG1063|consen 593 DRTVSLYEVQEDIKD---EFRFACLKAHTRIIWD------------------------------------CSWSPDEKYF 633 (764)
T ss_pred CceEEeeeeecccch---hhhhccccccceEEEE------------------------------------cccCccccee
Confidence 999999998554321 111111111 111111 4689998774
Q ss_pred EEEeecCcCeEEEEecCCC--ceeeeecccccCCCCCcCCCCCceeeeEEEecCCCCC-CceEEEEeecCCcEEEEEccC
Q 021291 164 MAVAGEQLSEVEIWDLNTA--ERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQ-GFVNVLAGYEDGSILVWDIRN 240 (314)
Q Consensus 164 ~~~~g~~d~~i~vwd~~~~--~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~-g~~~l~~g~~dg~i~vwd~~~ 240 (314)
++++.|.+|++|..... +.+..+... .+ ...++++. |.|-.-. ....+++|-+.|.|.+|....
T Consensus 634 --aTaSRDK~VkVW~~~~~~d~~i~~~a~~------~~----~~aVTAv~-~~~~~~~e~~~~vavGle~GeI~l~~~~~ 700 (764)
T KOG1063|consen 634 --ATASRDKKVKVWEEPDLRDKYISRFACL------KF----SLAVTAVA-YLPVDHNEKGDVVAVGLEKGEIVLWRRKR 700 (764)
T ss_pred --EEecCCceEEEEeccCchhhhhhhhchh------cc----CCceeeEE-eeccccccccceEEEEecccEEEEEeccc
Confidence 37889999999998877 333332210 22 44666776 7663211 112789999999999999651
Q ss_pred CCC-----------ceEeeecCCcceEEEEEeCC----------CCeEEEecCCCcEEEEecC
Q 021291 241 PGI-----------PLTAMKVHLEPVLCLSIDES----------CNGGISGGADQKIVLYNLD 282 (314)
Q Consensus 241 ~~~-----------~~~~~~~h~~~v~~~~~~~~----------~~~l~s~s~dg~i~iw~~~ 282 (314)
..+ .+....+|.+.|+.+.|.|. ...|++|+.|..++++++.
T Consensus 701 ~~~~~~~~~~~~~~~l~~~~~~~~aV~rl~w~p~~~~~~~~~~~~l~la~~g~D~~vri~nv~ 763 (764)
T KOG1063|consen 701 EHRQVTVGTFNLDTRLCATIGPDSAVNRLLWRPTCSDDWVEDKEWLNLAVGGDDESVRIFNVD 763 (764)
T ss_pred ccccccceeeeeccccccccChHHhhheeEeccccccccccccceeEEeeecccceeEEeecc
Confidence 011 11122356778999999754 3457999999999999875
No 163
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.81 E-value=4.9e-19 Score=134.39 Aligned_cols=232 Identities=17% Similarity=0.217 Sum_probs=158.2
Q ss_pred CCCceeEEEEccC----CCEEEEecCCCeEEEEeCCCCeEEEEEeccCCcccEEEEEEcccCCCCeEEEeecCCeEEEEe
Q 021291 17 HRASVTDVCFHQT----KPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWD 92 (314)
Q Consensus 17 h~~~v~~~~~~~~----~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd 92 (314)
|...-..++|+-+ ..+||.|+.-|.|+|.|+.++++...+.+|.++ |..+.+.|. +.++++++|.|.+|++||
T Consensus 88 ~~Esfytcsw~yd~~~~~p~la~~G~~GvIrVid~~~~~~~~~~~ghG~s--INeik~~p~-~~qlvls~SkD~svRlwn 164 (385)
T KOG1034|consen 88 HDESFYTCSWSYDSNTGNPFLAAGGYLGVIRVIDVVSGQCSKNYRGHGGS--INEIKFHPD-RPQLVLSASKDHSVRLWN 164 (385)
T ss_pred CCcceEEEEEEecCCCCCeeEEeecceeEEEEEecchhhhccceeccCcc--chhhhcCCC-CCcEEEEecCCceEEEEe
Confidence 6777888888863 348899999999999999999999999999966 999999994 346899999999999999
Q ss_pred CCCCCCCCCCeeeeecceeeEEEeeeeeccccccccCCCCcceeeccCCceeeecCCCCCC----ceeccCCCceEEEee
Q 021291 93 IENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSK----DDVPAEGPKYMAVAG 168 (314)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~g 168 (314)
+++..++. ++ .-..+|.+ +.|+++|.+++ ++
T Consensus 165 I~~~~Cv~--Vf-----------------------------------------GG~egHrdeVLSvD~~~~gd~i~--Sc 199 (385)
T KOG1034|consen 165 IQTDVCVA--VF-----------------------------------------GGVEGHRDEVLSVDFSLDGDRIA--SC 199 (385)
T ss_pred ccCCeEEE--Ee-----------------------------------------cccccccCcEEEEEEcCCCCeee--cc
Confidence 99987643 11 11233333 66899998554 67
Q ss_pred cCcCeEEEEecCCCceeeeecc------ccc----------CCCCCcCCCCCceeeeEEEecCCCCCCceEEEEeecCCc
Q 021291 169 EQLSEVEIWDLNTAERCTRLHQ------NSC----------GGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGS 232 (314)
Q Consensus 169 ~~d~~i~vwd~~~~~~~~~~~~------~~~----------~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~ 232 (314)
+.|.+|++|++...+....++. +.. .+...-.+-++..+-|+. |- |. ++++-+-++.
T Consensus 200 GmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVDCvr-w~-----gd-~ilSkscena 272 (385)
T KOG1034|consen 200 GMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVDCVR-WF-----GD-FILSKSCENA 272 (385)
T ss_pred CCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccccccccccchHHHHH-HH-----hh-heeecccCce
Confidence 7799999999985432211110 000 000000011122333443 44 33 7888888899
Q ss_pred EEEEEccCCCC-------------ceEeeecCCcceEEEEE--eCCCCeEEEecCCCcEEEEecCCCeeeE---------
Q 021291 233 ILVWDIRNPGI-------------PLTAMKVHLEPVLCLSI--DESCNGGISGGADQKIVLYNLDHSTYVL--------- 288 (314)
Q Consensus 233 i~vwd~~~~~~-------------~~~~~~~h~~~v~~~~~--~~~~~~l~s~s~dg~i~iw~~~~~~~~~--------- 288 (314)
|..|-.-...+ .+.++......|+-+.| ++-++.||.|.+.|.|.+||++......
T Consensus 273 I~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~~~~la~gnq~g~v~vwdL~~~ep~~~ttl~~s~~ 352 (385)
T KOG1034|consen 273 IVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDPWQKMLALGNQSGKVYVWDLDNNEPPKCTTLTHSKS 352 (385)
T ss_pred EEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEeecHHHHHHhhccCCCcEEEEECCCCCCccCceEEeccc
Confidence 99998721121 22334444456666665 7888899999999999999998776531
Q ss_pred --eeeeeeecCCCceec
Q 021291 289 --FGIGFVCDQEGNKFG 303 (314)
Q Consensus 289 --~~~~~~~~~~~~~~~ 303 (314)
++...+++.+|..+.
T Consensus 353 ~~tVRQ~sfS~dgs~lv 369 (385)
T KOG1034|consen 353 GSTVRQTSFSRDGSILV 369 (385)
T ss_pred cceeeeeeecccCcEEE
Confidence 133455667776554
No 164
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.80 E-value=1.7e-18 Score=140.19 Aligned_cols=218 Identities=14% Similarity=0.192 Sum_probs=144.8
Q ss_pred CceEEecCCCCceeEEEEccCCCEEEEecCCCeEEEEeCCCC----------eEEEEEeccCCcccEEEEEEcccCCCCe
Q 021291 9 DPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQH----------RTVSSSWVHSAAHGIVSVATGPSIGLNK 78 (314)
Q Consensus 9 ~~~~~l~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~----------~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 78 (314)
+++.+|++|.++|.|+++.+++..+++|+.||+|+.|++... .....+.+|... |+.+++++ ....
T Consensus 335 epi~tfraH~gPVl~v~v~~n~~~~ysgg~Dg~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtda--vw~l~~s~--~~~~ 410 (577)
T KOG0642|consen 335 EPILTFRAHEGPVLCVVVPSNGEHCYSGGIDGTIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDA--VWLLALSS--TKDR 410 (577)
T ss_pred eeeEEEecccCceEEEEecCCceEEEeeccCceeeeeccCCCCCcccccCcchhccceeccccc--eeeeeecc--cccc
Confidence 689999999999999999999999999999999999965421 234567889855 99999999 7788
Q ss_pred EEEeecCCeEEEEeCCCCCCCCCCeeeeecceeeEEEeeeeeccccccccC--CCCcceeeccCCceeee----cCCC--
Q 021291 79 VISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQA--NEPKDCYEREVGETVDT----DSLC-- 150 (314)
Q Consensus 79 l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~----~~~~-- 150 (314)
|++++.||+|++|+...... . .+...........+...........+. .....+.++........ ...+
T Consensus 411 Llscs~DgTvr~w~~~~~~~-~--~f~~~~e~g~Plsvd~~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~ 487 (577)
T KOG0642|consen 411 LLSCSSDGTVRLWEPTEESP-C--TFGEPKEHGYPLSVDRTSSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPR 487 (577)
T ss_pred eeeecCCceEEeeccCCcCc-c--ccCCccccCCcceEeeccchhHhhhhhcccccccchhhhhhhheeeccccCCCccc
Confidence 99999999999999876543 1 112111111111111111111111111 01111111111111100 0011
Q ss_pred ---CCC-ceeccCCCceEEEeecCcCeEEEEecCCCceeeeecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEE
Q 021291 151 ---DSK-DDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLA 226 (314)
Q Consensus 151 ---~~~-~~~~~~~~~~~~~~g~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~ 226 (314)
+.. +.+.|.+...+ ++..|+.|+++|..++..+.... +|.. .+.+++ +.|+++ +|++
T Consensus 488 ~~~~in~vVs~~~~~~~~--~~hed~~Ir~~dn~~~~~l~s~~--------a~~~----svtsla-i~~ng~----~l~s 548 (577)
T KOG0642|consen 488 RYPQINKVVSHPTADITF--TAHEDRSIRFFDNKTGKILHSMV--------AHKD----SVTSLA-IDPNGP----YLMS 548 (577)
T ss_pred ccCccceEEecCCCCeeE--ecccCCceecccccccccchhee--------eccc----eeccee-ecCCCc----eEEe
Confidence 111 66777775333 67789999999999999988777 5633 677776 999844 9999
Q ss_pred eecCCcEEEEEccCCCCceEeeecCCc
Q 021291 227 GYEDGSILVWDIRNPGIPLTAMKVHLE 253 (314)
Q Consensus 227 g~~dg~i~vwd~~~~~~~~~~~~~h~~ 253 (314)
|+.|+.+++|.+.. ..++.....|..
T Consensus 549 ~s~d~sv~l~kld~-k~~~~es~~~r~ 574 (577)
T KOG0642|consen 549 GSHDGSVRLWKLDV-KTCVLESTAHRK 574 (577)
T ss_pred ecCCceeehhhccc-hheeeccccccc
Confidence 99999999999987 666666666643
No 165
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.80 E-value=3.2e-18 Score=136.85 Aligned_cols=241 Identities=14% Similarity=0.173 Sum_probs=155.7
Q ss_pred ceeEEEEccCCC-EEEEecCCCeEEEEeCCCCe---E--EEEEeccCCcccEEEEEEcccCCCCeEEEeecCCeEEEEeC
Q 021291 20 SVTDVCFHQTKP-ILFAGTTGGELRIWDTVQHR---T--VSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDI 93 (314)
Q Consensus 20 ~v~~~~~~~~~~-~l~s~~~dg~v~iwd~~~~~---~--~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd~ 93 (314)
.+.++.|+.... .+++-+.|..|++|.-. ++ . +....+. .-.|++... ...++++|+..+.|+|||+
T Consensus 36 g~~s~~w~~~n~lvvas~~gdk~~~~~~K~-g~~~~Vp~~~k~~gd----~~~Cv~~~s--~S~y~~sgG~~~~Vkiwdl 108 (673)
T KOG4378|consen 36 GDFSFNWQRRNFLVVASMAGDKVMRIKEKD-GKTPEVPRVRKLTGD----NAFCVACAS--QSLYEISGGQSGCVKIWDL 108 (673)
T ss_pred cceeeeccccceEEEeecCCceeEEEeccc-CCCCccceeeccccc----hHHHHhhhh--cceeeeccCcCceeeehhh
Confidence 488899987553 23445668899999743 33 1 1222222 234555544 4578999999999999999
Q ss_pred CCCCCCCCCeeeeecceeeEEEeeeeeccccccccCCCCcceeeccCCceeeecCCCCCC----ceeccCCCceEEEeec
Q 021291 94 ENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSK----DDVPAEGPKYMAVAGE 169 (314)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~g~ 169 (314)
+...+.+ .+..+...+....+..... .......++...+..+..+........+... +.|++..+.++. +.+
T Consensus 109 ~~kl~hr--~lkdh~stvt~v~YN~~De-yiAsvs~gGdiiih~~~t~~~tt~f~~~sgqsvRll~ys~skr~lL~-~as 184 (673)
T KOG4378|consen 109 RAKLIHR--FLKDHQSTVTYVDYNNTDE-YIASVSDGGDIIIHGTKTKQKTTTFTIDSGQSVRLLRYSPSKRFLLS-IAS 184 (673)
T ss_pred HHHHHhh--hccCCcceeEEEEecCCcc-eeEEeccCCcEEEEecccCccccceecCCCCeEEEeecccccceeeE-eec
Confidence 9655443 2222222222222221111 1112223333333333333222111111111 789999877776 556
Q ss_pred CcCeEEEEecCCCceeeeecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEeecCCcEEEEEccCCCCceEeee
Q 021291 170 QLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMK 249 (314)
Q Consensus 170 ~d~~i~vwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~~~~~ 249 (314)
.+|.|.+||+....++..+.. .|+. ++..++ |+|. .+.+|++.+.|..|.+||++. ......+.
T Consensus 185 d~G~VtlwDv~g~sp~~~~~~-------~HsA----P~~gic-fsps---ne~l~vsVG~Dkki~~yD~~s-~~s~~~l~ 248 (673)
T KOG4378|consen 185 DKGAVTLWDVQGMSPIFHASE-------AHSA----PCRGIC-FSPS---NEALLVSVGYDKKINIYDIRS-QASTDRLT 248 (673)
T ss_pred cCCeEEEEeccCCCcccchhh-------hccC----CcCcce-ecCC---ccceEEEecccceEEEeeccc-ccccceee
Confidence 689999999998888777764 6755 444554 9997 344899999999999999996 55555555
Q ss_pred cCCcceEEEEEeCCCCeEEEecCCCcEEEEecCCCeeeE
Q 021291 250 VHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTYVL 288 (314)
Q Consensus 250 ~h~~~v~~~~~~~~~~~l~s~s~dg~i~iw~~~~~~~~~ 288 (314)
...+...++|.++|.+|+.|...|.|..||++..+...
T Consensus 249 -y~~Plstvaf~~~G~~L~aG~s~G~~i~YD~R~~k~Pv 286 (673)
T KOG4378|consen 249 -YSHPLSTVAFSECGTYLCAGNSKGELIAYDMRSTKAPV 286 (673)
T ss_pred -ecCCcceeeecCCceEEEeecCCceEEEEecccCCCCc
Confidence 36799999999999999999999999999999776543
No 166
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.80 E-value=1.5e-17 Score=136.66 Aligned_cols=253 Identities=17% Similarity=0.229 Sum_probs=164.6
Q ss_pred EEEEcc---CCCEEEEecCCCeEEEEeCCCCeE------EEEEeccCCcccEEEEEEcccCCCCeEEEeecCCeEEEEeC
Q 021291 23 DVCFHQ---TKPILFAGTTGGELRIWDTVQHRT------VSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDI 93 (314)
Q Consensus 23 ~~~~~~---~~~~l~s~~~dg~v~iwd~~~~~~------~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd~ 93 (314)
+..|++ ...+|+.+..||.|.++|.+.... +.....|... |..+.|.| ....|++++.|.++++||+
T Consensus 54 ~~sFs~~~n~eHiLavadE~G~i~l~dt~~~~fr~ee~~lk~~~aH~nA--ifDl~wap--ge~~lVsasGDsT~r~Wdv 129 (720)
T KOG0321|consen 54 ADSFSAAPNKEHILAVADEDGGIILFDTKSIVFRLEERQLKKPLAHKNA--IFDLKWAP--GESLLVSASGDSTIRPWDV 129 (720)
T ss_pred cccccCCCCccceEEEecCCCceeeecchhhhcchhhhhhcccccccce--eEeeccCC--CceeEEEccCCceeeeeee
Confidence 366766 346899999999999999875332 3455678755 99999999 7789999999999999999
Q ss_pred CCCCCCCCCeeeeecceeeEEEeeeeeccccccccCCCCcceeeccCCc---------ee----ee------c-------
Q 021291 94 ENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGE---------TV----DT------D------- 147 (314)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~----~~------~------- 147 (314)
++.++....++..+........|.+...........++...+|+++-.. .. .. .
T Consensus 130 k~s~l~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k 209 (720)
T KOG0321|consen 130 KTSRLVGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRK 209 (720)
T ss_pred ccceeecceeecccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhccccc
Confidence 9998877544555666666666666665555666666777777764322 00 00 0
Q ss_pred CCCCCC-------ceeccCCCceEEEeecCcCeEEEEecCCCceeeeecccccCCCCCcCCCCCceeeeEEEecCCCCCC
Q 021291 148 SLCDSK-------DDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQG 220 (314)
Q Consensus 148 ~~~~~~-------~~~~~~~~~~~~~~g~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g 220 (314)
-..+.. +.+..| +..++.+|..|+.|+|||++.............-....|+.. .-.+++ +.-|.. |
T Consensus 210 ~kA~s~ti~ssvTvv~fkD-e~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skr-s~G~~n---L~lDss-G 283 (720)
T KOG0321|consen 210 WKAASNTIFSSVTVVLFKD-ESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKR-SVGQVN---LILDSS-G 283 (720)
T ss_pred cccccCceeeeeEEEEEec-cceeeeccCCCcceEEEeecccccccccCCCcccCccCcccc-eeeeEE---EEecCC-C
Confidence 000111 222234 345666666799999999998776544432211111122111 112333 333432 5
Q ss_pred ceEEEEeecCCcEEEEEccCCC-CceEeeecCCcceEEE--EEeCCCCeEEEecCCCcEEEEecCCCee
Q 021291 221 FVNVLAGYEDGSILVWDIRNPG-IPLTAMKVHLEPVLCL--SIDESCNGGISGGADQKIVLYNLDHSTY 286 (314)
Q Consensus 221 ~~~l~~g~~dg~i~vwd~~~~~-~~~~~~~~h~~~v~~~--~~~~~~~~l~s~s~dg~i~iw~~~~~~~ 286 (314)
. +|++.+.|+.|++|++.... .++..+.++...-.-+ ..+|++.+|++|+.|...++|.+.+.+.
T Consensus 284 t-~L~AsCtD~sIy~ynm~s~s~sP~~~~sg~~~~sf~vks~lSpd~~~l~SgSsd~~ayiw~vs~~e~ 351 (720)
T KOG0321|consen 284 T-YLFASCTDNSIYFYNMRSLSISPVAEFSGKLNSSFYVKSELSPDDCSLLSGSSDEQAYIWVVSSPEA 351 (720)
T ss_pred C-eEEEEecCCcEEEEeccccCcCchhhccCcccceeeeeeecCCCCceEeccCCCcceeeeeecCccC
Confidence 5 66666679999999998633 4566666554322222 2389999999999999999999998764
No 167
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.80 E-value=1e-17 Score=132.69 Aligned_cols=230 Identities=11% Similarity=0.153 Sum_probs=168.3
Q ss_pred ceEEecCCCCceeEEEEccCCC-EEEEecCCCeEEEEeCCCCeEEE--EEeccCCcccEEEEEEcccCCCCeEEEeecCC
Q 021291 10 PVAVLRGHRASVTDVCFHQTKP-ILFAGTTGGELRIWDTVQHRTVS--SSWVHSAAHGIVSVATGPSIGLNKVISQGRDG 86 (314)
Q Consensus 10 ~~~~l~~h~~~v~~~~~~~~~~-~l~s~~~dg~v~iwd~~~~~~~~--~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg 86 (314)
.++.+.--..+|.+++|.|+|. .+++++...-++.||+.+.+... .+.++.. ..+.....+| ++++|+..+..|
T Consensus 249 ~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~ak~~k~~~~~g~e~-~~~e~FeVSh--d~~fia~~G~~G 325 (514)
T KOG2055|consen 249 KLQSIHLEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETAKVTKLKPPYGVEE-KSMERFEVSH--DSNFIAIAGNNG 325 (514)
T ss_pred hheeeeeccCccceeeecCCCceEEEecccceEEEEeeccccccccccCCCCccc-chhheeEecC--CCCeEEEcccCc
Confidence 4555555677899999999998 89999999999999999876433 3334432 3477888999 999999999999
Q ss_pred eEEEEeCCCCCCCCCCeeeeecceeeEEEeeeeeccccccccCCCCcceeeccCCceeeecCCCCCCceeccCCCceEEE
Q 021291 87 TVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAV 166 (314)
Q Consensus 87 ~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (314)
.|.+--..+++++. +++....... ++|+.+++.+++
T Consensus 326 ~I~lLhakT~eli~----s~KieG~v~~---------------------------------------~~fsSdsk~l~~- 361 (514)
T KOG2055|consen 326 HIHLLHAKTKELIT----SFKIEGVVSD---------------------------------------FTFSSDSKELLA- 361 (514)
T ss_pred eEEeehhhhhhhhh----eeeeccEEee---------------------------------------EEEecCCcEEEE-
Confidence 99999999988755 3332222211 458888877775
Q ss_pred eecCcCeEEEEecCCCceeeeecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEeecCCcEEEEEccC-----C
Q 021291 167 AGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRN-----P 241 (314)
Q Consensus 167 ~g~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~-----~ 241 (314)
+|+ +|.|.+||++...++..+... +.. .-++++ .+++ +. +||+|+..|.|.|||.++ .
T Consensus 362 ~~~-~GeV~v~nl~~~~~~~rf~D~---------G~v--~gts~~-~S~n---g~-ylA~GS~~GiVNIYd~~s~~~s~~ 424 (514)
T KOG2055|consen 362 SGG-TGEVYVWNLRQNSCLHRFVDD---------GSV--HGTSLC-ISLN---GS-YLATGSDSGIVNIYDGNSCFASTN 424 (514)
T ss_pred EcC-CceEEEEecCCcceEEEEeec---------Ccc--ceeeee-ecCC---Cc-eEEeccCcceEEEeccchhhccCC
Confidence 444 699999999999999988731 111 223333 5565 44 999999999999999653 2
Q ss_pred CCceEeeecCCcceEEEEEeCCCCeEEEecC--CCcEEEEecCCCee----------eEeeeeeeecCCCceec
Q 021291 242 GIPLTAMKVHLEPVLCLSIDESCNGGISGGA--DQKIVLYNLDHSTY----------VLFGIGFVCDQEGNKFG 303 (314)
Q Consensus 242 ~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~--dg~i~iw~~~~~~~----------~~~~~~~~~~~~~~~~~ 303 (314)
.+|+..+..-...|++|.|+++++.|+.+|. +..+|+-.+.+... +-....++++|.+..++
T Consensus 425 PkPik~~dNLtt~Itsl~Fn~d~qiLAiaS~~~knalrLVHvPS~TVFsNfP~~n~~vg~vtc~aFSP~sG~lA 498 (514)
T KOG2055|consen 425 PKPIKTVDNLTTAITSLQFNHDAQILAIASRVKKNALRLVHVPSCTVFSNFPTSNTKVGHVTCMAFSPNSGYLA 498 (514)
T ss_pred CCchhhhhhhheeeeeeeeCcchhhhhhhhhccccceEEEeccceeeeccCCCCCCcccceEEEEecCCCceEE
Confidence 4677778777889999999999999877775 56788877664432 22334456667666554
No 168
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.79 E-value=1.2e-17 Score=126.54 Aligned_cols=200 Identities=12% Similarity=0.193 Sum_probs=144.0
Q ss_pred CCCCceeEEEEccCCCEEEEecCCCeEEEEeCCCCeEEEEEeccCCcccEEEEEEcccCCCCeEEEeecCCeEEEEeCCC
Q 021291 16 GHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIEN 95 (314)
Q Consensus 16 ~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~ 95 (314)
-|.-.|..+-....+.+|++++.|..|.+|+++ |+.+..+...... -+..+.+| +|+++++++.---|++|.+--
T Consensus 185 kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lk-Gq~L~~idtnq~~--n~~aavSP--~GRFia~~gFTpDVkVwE~~f 259 (420)
T KOG2096|consen 185 KHQVDIINIGIAGNAKYIMSASLDTKICLWDLK-GQLLQSIDTNQSS--NYDAAVSP--DGRFIAVSGFTPDVKVWEPIF 259 (420)
T ss_pred hcccceEEEeecCCceEEEEecCCCcEEEEecC-Cceeeeecccccc--ccceeeCC--CCcEEEEecCCCCceEEEEEe
Confidence 466677777777788999999999999999988 8999888776633 77889999 999999999988999998732
Q ss_pred ---CCCCC-CCeeeeecceeeEEEeeeeeccccccccCCCCcceeeccCCceeeecCCCCCC----ceeccCCCceEEEe
Q 021291 96 ---GGLSS-NPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSK----DDVPAEGPKYMAVA 167 (314)
Q Consensus 96 ---~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~ 167 (314)
++... ...+.+ .+|+. ++|+++..+++ +
T Consensus 260 ~kdG~fqev~rvf~L------------------------------------------kGH~saV~~~aFsn~S~r~v--t 295 (420)
T KOG2096|consen 260 TKDGTFQEVKRVFSL------------------------------------------KGHQSAVLAAAFSNSSTRAV--T 295 (420)
T ss_pred ccCcchhhhhhhhee------------------------------------------ccchhheeeeeeCCCcceeE--E
Confidence 21110 112222 33333 67899887665 6
Q ss_pred ecCcCeEEEEecCCC----c---eeeeecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEeecCCcEEEEEccC
Q 021291 168 GEQLSEVEIWDLNTA----E---RCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRN 240 (314)
Q Consensus 168 g~~d~~i~vwd~~~~----~---~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~ 240 (314)
.+.||++++||+.-. + .+.....+ -|. ..+....+. .+|. |+ .|+.. ....++++..+.
T Consensus 296 vSkDG~wriwdtdVrY~~~qDpk~Lk~g~~p------l~a--ag~~p~RL~-lsP~---g~-~lA~s-~gs~l~~~~se~ 361 (420)
T KOG2096|consen 296 VSKDGKWRIWDTDVRYEAGQDPKILKEGSAP------LHA--AGSEPVRLE-LSPS---GD-SLAVS-FGSDLKVFASED 361 (420)
T ss_pred EecCCcEEEeeccceEecCCCchHhhcCCcc------hhh--cCCCceEEE-eCCC---Cc-EEEee-cCCceEEEEccc
Confidence 778999999998532 2 22222100 121 123344676 9998 54 44444 456899999998
Q ss_pred CCCceEeee-cCCcceEEEEEeCCCCeEEEecCCCcEEEEe
Q 021291 241 PGIPLTAMK-VHLEPVLCLSIDESCNGGISGGADQKIVLYN 280 (314)
Q Consensus 241 ~~~~~~~~~-~h~~~v~~~~~~~~~~~l~s~s~dg~i~iw~ 280 (314)
++...+++ .|...|.+++|+++|++++|++ |..+++..
T Consensus 362 -g~~~~~~e~~h~~~Is~is~~~~g~~~atcG-dr~vrv~~ 400 (420)
T KOG2096|consen 362 -GKDYPELEDIHSTTISSISYSSDGKYIATCG-DRYVRVIR 400 (420)
T ss_pred -CccchhHHHhhcCceeeEEecCCCcEEeeec-ceeeeeec
Confidence 66665554 7999999999999999999986 66788775
No 169
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.79 E-value=4.4e-17 Score=122.27 Aligned_cols=246 Identities=13% Similarity=0.181 Sum_probs=177.6
Q ss_pred cCCCCceeEEEEcc-CCCEEEEecCCCeEEEEeCCCCeEEEEEeccCCcccEEEEEEcccCC-CCeEEEeecCCeEEEEe
Q 021291 15 RGHRASVTDVCFHQ-TKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIG-LNKVISQGRDGTVKCWD 92 (314)
Q Consensus 15 ~~h~~~v~~~~~~~-~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~l~s~~~dg~v~iwd 92 (314)
.+|.-.|..+.|-| |.-.+.+++.|.+++|||..+.+....|+.. +.|++-+++|... .-++++|..|-.|++-|
T Consensus 98 ~~Hky~iss~~WyP~DtGmFtssSFDhtlKVWDtnTlQ~a~~F~me---~~VYshamSp~a~sHcLiA~gtr~~~VrLCD 174 (397)
T KOG4283|consen 98 NGHKYAISSAIWYPIDTGMFTSSSFDHTLKVWDTNTLQEAVDFKME---GKVYSHAMSPMAMSHCLIAAGTRDVQVRLCD 174 (397)
T ss_pred ccceeeeeeeEEeeecCceeecccccceEEEeecccceeeEEeecC---ceeehhhcChhhhcceEEEEecCCCcEEEEe
Confidence 46888999999999 6668999999999999999998888887654 4499999998533 23566778888999999
Q ss_pred CCCCCCCCCCeeeeecceeeEEEeeeeeccccccccCCCCcceeeccCCceeeec--------------CCCCCC----c
Q 021291 93 IENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTD--------------SLCDSK----D 154 (314)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~----~ 154 (314)
+.++.+.. .+..+........+++............+....|+++........ -..|.+ +
T Consensus 175 i~SGs~sH--~LsGHr~~vlaV~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngl 252 (397)
T KOG4283|consen 175 IASGSFSH--TLSGHRDGVLAVEWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGL 252 (397)
T ss_pred ccCCccee--eeccccCceEEEEeccCceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeee
Confidence 99998855 455555566666667666666777777788888988765211111 223333 8
Q ss_pred eeccCCCceEEEeecCcCeEEEEecCCCceee-eecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEeecCCcE
Q 021291 155 DVPAEGPKYMAVAGEQLSEVEIWDLNTAERCT-RLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSI 233 (314)
Q Consensus 155 ~~~~~~~~~~~~~g~~d~~i~vwd~~~~~~~~-~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i 233 (314)
+|..++.+++. .+.|..+++|+..+|+... .+-.. .|.. ..+..+.+.+-+. + .++---.++.+
T Consensus 253 a~tSd~~~l~~--~gtd~r~r~wn~~~G~ntl~~~g~~------~~n~-~~~~~~~~~~~~s----~--vfv~~p~~~~l 317 (397)
T KOG4283|consen 253 AWTSDARYLAS--CGTDDRIRVWNMESGRNTLREFGPI------IHNQ-TTSFAVHIQSMDS----D--VFVLFPNDGSL 317 (397)
T ss_pred eecccchhhhh--ccCccceEEeecccCcccccccccc------cccc-cccceEEEeeccc----c--eEEEEecCCeE
Confidence 99999987763 4457899999998876422 22110 1211 1112222221111 2 33333445899
Q ss_pred EEEEccCCCCceEeeecCCcceEEEEEeCCCCeEEEecCCCcEEEEec
Q 021291 234 LVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNL 281 (314)
Q Consensus 234 ~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~iw~~ 281 (314)
.++++-. +..+..+..|-..|.+..+.|+-+...+|+.|+.|..|-.
T Consensus 318 all~~~s-gs~ir~l~~h~k~i~c~~~~~~fq~~~tg~~d~ni~~w~p 364 (397)
T KOG4283|consen 318 ALLNLLE-GSFVRRLSTHLKRINCAAYRPDFEQCFTGDMNGNIYMWSP 364 (397)
T ss_pred EEEEccC-ceEEEeeecccceeeEEeecCchhhhhccccCCccccccc
Confidence 9999998 8999999999889999999999889999999999999987
No 170
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.78 E-value=6.9e-18 Score=136.58 Aligned_cols=233 Identities=15% Similarity=0.156 Sum_probs=152.1
Q ss_pred ceEEecCCCCceeEEEEccCCCEEEEecCCCeEEEEeCCCCeEEEEEe-ccCCcccEEEEEEcccCCCCeEEEeecCCeE
Q 021291 10 PVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSW-VHSAAHGIVSVATGPSIGLNKVISQGRDGTV 88 (314)
Q Consensus 10 ~~~~l~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~v 88 (314)
.-+.|.||++.|+|++|+.+|.+|++|+.|-.+.|||.-..+.+..+. +|. ..|.++.|.|..+...+++|..|..|
T Consensus 42 lE~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~TgHt--aNIFsvKFvP~tnnriv~sgAgDk~i 119 (758)
T KOG1310|consen 42 LEAELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSISTGHT--ANIFSVKFVPYTNNRIVLSGAGDKLI 119 (758)
T ss_pred hhhhhccccceecceeecCCCCEEeecCCcceEEeecchhcceeeeeecccc--cceeEEeeeccCCCeEEEeccCcceE
Confidence 345788999999999999999999999999999999998777777664 677 44999999997666789999999999
Q ss_pred EEEeCCCCCCCCCCeeeeecceeeEEEeeeeeccccccccCCCCcceeeccCCceeeecCCCCCC----ceeccCCCceE
Q 021291 89 KCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSK----DDVPAEGPKYM 164 (314)
Q Consensus 89 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~ 164 (314)
+++|+...+-.. .-+....... ....|.. ++-.|++.+.+
T Consensus 120 ~lfdl~~~~~~~----~d~~~~~~~~--------------------------------~~~cht~rVKria~~p~~Phtf 163 (758)
T KOG1310|consen 120 KLFDLDSSKEGG----MDHGMEETTR--------------------------------CWSCHTDRVKRIATAPNGPHTF 163 (758)
T ss_pred EEEecccccccc----cccCccchhh--------------------------------hhhhhhhhhhheecCCCCCceE
Confidence 999998533111 0000000000 0111111 56678887776
Q ss_pred EEeecCcCeEEEEecCCCceeeeec-c-cccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEeecCCcEEEEEccCCC
Q 021291 165 AVAGEQLSEVEIWDLNTAERCTRLH-Q-NSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPG 242 (314)
Q Consensus 165 ~~~g~~d~~i~vwd~~~~~~~~~~~-~-~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~ 242 (314)
. ++++||+|+-||++....-..-. . ....+ -+. ......++. .+|..+ .+|++|+.|-..++||.+...
T Consensus 164 w-sasEDGtirQyDiREph~c~p~~~~~~~l~n--y~~--~lielk~lt-isp~rp---~~laVGgsdpfarLYD~Rr~l 234 (758)
T KOG1310|consen 164 W-SASEDGTIRQYDIREPHVCNPDEDCPSILVN--YNP--QLIELKCLT-ISPSRP---YYLAVGGSDPFARLYDRRRVL 234 (758)
T ss_pred E-EecCCcceeeecccCCccCCccccccHHHHH--hch--hhheeeeee-ecCCCC---ceEEecCCCchhhhhhhhhhc
Confidence 6 57789999999999743211000 0 00000 010 122345565 888754 399999999999999954210
Q ss_pred C-----------------ceEeee-cCC--------cc---eEEEEEeCCCCeEEEecCCCcEEEEecCCCeeeEe
Q 021291 243 I-----------------PLTAMK-VHL--------EP---VLCLSIDESCNGGISGGADQKIVLYNLDHSTYVLF 289 (314)
Q Consensus 243 ~-----------------~~~~~~-~h~--------~~---v~~~~~~~~~~~l~s~s~dg~i~iw~~~~~~~~~~ 289 (314)
+ ++.-+. +|. .. ++-+.|+|+|.-|...=..-.|+++|+..++....
T Consensus 235 ks~~s~~~~~~~pp~~~~cv~yf~p~hlkn~~gn~~~~~~~~t~vtfnpNGtElLvs~~gEhVYlfdvn~~~~~~~ 310 (758)
T KOG1310|consen 235 KSFRSDGTMNTCPPKDCRCVRYFSPGHLKNSQGNLDRYITCCTYVTFNPNGTELLVSWGGEHVYLFDVNEDKSPTP 310 (758)
T ss_pred cCCCCCccccCCCCcccchhheecCccccCcccccccceeeeEEEEECCCCcEEEEeeCCeEEEEEeecCCCCcee
Confidence 0 122111 222 12 45677899987554433334699999998876653
No 171
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.78 E-value=1.2e-17 Score=127.62 Aligned_cols=220 Identities=12% Similarity=0.178 Sum_probs=143.0
Q ss_pred CCCceEEecCCCCceeEEEEcc--CCCEEEEecCCCeEEEEeCCCCeEEEEEeccCCc-ccEEEEEEcccCCCCeEEEee
Q 021291 7 PPDPVAVLRGHRASVTDVCFHQ--TKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAA-HGIVSVATGPSIGLNKVISQG 83 (314)
Q Consensus 7 ~~~~~~~l~~h~~~v~~~~~~~--~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~~~l~s~~ 83 (314)
.++.+..|++|...++.++|.. ....+.+|+.||+|++||++.......+....++ .+-.|++.+- .++.+++|.
T Consensus 59 tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~f~~ld~nc--k~~ii~~Gt 136 (376)
T KOG1188|consen 59 TGQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGTPFICLDLNC--KKNIIACGT 136 (376)
T ss_pred chhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCCCcceEeeccC--cCCeEEecc
Confidence 3567889999999999999987 4678999999999999999987665554432221 4567777765 557777775
Q ss_pred c----CCeEEEEeCCCCCCCCCCeeeeecceeeEEEeeeeeccccccccCCCCcceeeccCCceeeecCCCCCCceeccC
Q 021291 84 R----DGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAE 159 (314)
Q Consensus 84 ~----dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (314)
. |-.|.+||++..+.........+...... +.|+|.
T Consensus 137 E~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~----------------------------------------lrFHP~ 176 (376)
T KOG1188|consen 137 ELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQ----------------------------------------LRFHPS 176 (376)
T ss_pred ccccCceEEEEEEeccccchhhhhhhhccCccee----------------------------------------EEecCC
Confidence 4 66899999998764211111112211111 568899
Q ss_pred CCceEEEeecCcCeEEEEecCCCce----eeeecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEeecCCcEEE
Q 021291 160 GPKYMAVAGEQLSEVEIWDLNTAER----CTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILV 235 (314)
Q Consensus 160 ~~~~~~~~g~~d~~i~vwd~~~~~~----~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~v 235 (314)
..++++ +|+.||-|.+||+..... ..++. ....+-.+. |..+ +...|.+-+...+..+
T Consensus 177 ~pnlLl-SGSvDGLvnlfD~~~d~EeDaL~~viN-------------~~sSI~~ig-w~~~---~ykrI~clTH~Etf~~ 238 (376)
T KOG1188|consen 177 DPNLLL-SGSVDGLVNLFDTKKDNEEDALLHVIN-------------HGSSIHLIG-WLSK---KYKRIMCLTHMETFAI 238 (376)
T ss_pred CCCeEE-eecccceEEeeecCCCcchhhHHHhhc-------------ccceeeeee-eecC---CcceEEEEEccCceeE
Confidence 888876 788999999999975431 12222 122233333 4443 2112444444444555
Q ss_pred EEccCC------------------------------------------------------------CCceEeeec-CCcc
Q 021291 236 WDIRNP------------------------------------------------------------GIPLTAMKV-HLEP 254 (314)
Q Consensus 236 wd~~~~------------------------------------------------------------~~~~~~~~~-h~~~ 254 (314)
|++... .+.+..+.+ |...
T Consensus 239 ~ele~~~~~~~~~~~~~~~~d~r~~~~~dY~I~~~~~~~~~~~~l~g~~~n~~~~~~~~~~~s~~~~~~~a~l~g~~~ei 318 (376)
T KOG1188|consen 239 YELEDGSEETWLENPDVSADDLRKEDNCDYVINEHSPGDKDTCALAGTDSNKGTIFPLVDTSSGSLLTEPAILQGGHEEI 318 (376)
T ss_pred EEccCCChhhcccCccchhhhHHhhhhhhheeecccCCCcceEEEeccccCceeEEEeeecccccccCccccccCCcHHH
Confidence 544320 123334444 5667
Q ss_pred eEEEEEeCCCCeEEEecCCCcEEEEecCCCee
Q 021291 255 VLCLSIDESCNGGISGGADQKIVLYNLDHSTY 286 (314)
Q Consensus 255 v~~~~~~~~~~~l~s~s~dg~i~iw~~~~~~~ 286 (314)
|.++.|...+.++.||+.||.+.+|..+....
T Consensus 319 VR~i~~~~~~~~l~TGGEDG~l~~Wk~~da~e 350 (376)
T KOG1188|consen 319 VRDILFDVKNDVLYTGGEDGLLQAWKVEDATE 350 (376)
T ss_pred HHHHhhhcccceeeccCCCceEEEEecCCccc
Confidence 88888888888999999999999999754443
No 172
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.77 E-value=1.8e-16 Score=123.51 Aligned_cols=256 Identities=14% Similarity=0.212 Sum_probs=176.9
Q ss_pred CCceEEecC-CCCceeEEEEccCCCEEEEecCCCeEEEEeCCCCeEEEEEeccCCcccEEEEEEcccCCCCeEEEeecCC
Q 021291 8 PDPVAVLRG-HRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDG 86 (314)
Q Consensus 8 ~~~~~~l~~-h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg 86 (314)
++|++.... |.+.|.|++|...+++|++|+.+++|.+.|+++.+.+..+......+.|+.+..+| ..+.|++.+.++
T Consensus 94 ~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~~~VI~HDiEt~qsi~V~~~~~~~~~VY~m~~~P--~DN~~~~~t~~~ 171 (609)
T KOG4227|consen 94 PKPIGVMEHPHRSNIFSLEFDLENRFLYSGERWGTVIKHDIETKQSIYVANENNNRGDVYHMDQHP--TDNTLIVVTRAK 171 (609)
T ss_pred CCCceeccCccccceEEEEEccCCeeEecCCCcceeEeeecccceeeeeecccCcccceeecccCC--CCceEEEEecCc
Confidence 366766654 55899999999999999999999999999999998888775444334599999999 668999999999
Q ss_pred eEEEEeCCCCCCCCCCeeeee-cceeeEEEeeeeeccccccccCCCCcceeeccCCceeeec------CCCCC-C---ce
Q 021291 87 TVKCWDIENGGLSSNPSLTIK-TNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTD------SLCDS-K---DD 155 (314)
Q Consensus 87 ~v~iwd~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~-~---~~ 155 (314)
.|.+||.+.......+..... ........|.+............+...+|+++........ +.... . .-
T Consensus 172 ~V~~~D~Rd~~~~~~~~~~AN~~~~F~t~~F~P~~P~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~ 251 (609)
T KOG4227|consen 172 LVSFIDNRDRQNPISLVLPANSGKNFYTAEFHPETPALILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSL 251 (609)
T ss_pred eEEEEeccCCCCCCceeeecCCCccceeeeecCCCceeEEeccccCCCCceeeccccchHHhhhccccCcccchhhhhee
Confidence 999999987653322222222 2233445555555555556666677788888765433222 11111 1 77
Q ss_pred eccCCCceEEEeecCcCeEEEEecCCCceeeeecccccCCCCCcCCCCC---ceeeeEEEecCCCCCCceEEEEeecCCc
Q 021291 156 VPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGR---GMCMAVQAYLPSKSQGFVNVLAGYEDGS 232 (314)
Q Consensus 156 ~~~~~~~~~~~~g~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~h~~~~~---~~~~~~~~~~p~~~~g~~~l~~g~~dg~ 232 (314)
|+|.|..+++.- ....-.+||+-+.++.. ++. .|..... ..+-+++ |.-+ +-+++|+.+-.
T Consensus 252 ~~~~G~Q~msiR--R~~~P~~~D~~S~R~~V-~k~-------D~N~~GY~N~~T~KS~~-F~~D-----~~v~tGSD~~~ 315 (609)
T KOG4227|consen 252 WSPSGNQFMSIR--RGKCPLYFDFISQRCFV-LKS-------DHNPNGYCNIKTIKSMT-FIDD-----YTVATGSDHWG 315 (609)
T ss_pred eCCCCCeehhhh--ccCCCEEeeeeccccee-Eec-------cCCCCcceeeeeeeeee-eecc-----eeeeccCcccc
Confidence 999999887532 22345678887655432 221 2322111 1122333 6533 26999999999
Q ss_pred EEEEEccCC----C------------------CceEeeecCCcceEEEEEeCCCCeEEEecCCCcEEEEec
Q 021291 233 ILVWDIRNP----G------------------IPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNL 281 (314)
Q Consensus 233 i~vwd~~~~----~------------------~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~iw~~ 281 (314)
|++|.+... + ..+..+++|..-++.+.|++...+|++.+..+.+++|.-
T Consensus 316 i~~WklP~~~ds~G~~~IG~~~~~~~~~~~i~~~~~VLrGHRSv~NQVRF~~H~~~l~SSGVE~~~KlWS~ 386 (609)
T KOG4227|consen 316 IHIWKLPRANDSYGFTQIGHDEEEMPSEIFIEKELTVLRGHRSVPNQVRFSQHNNLLVSSGVENSFKLWSD 386 (609)
T ss_pred eEEEecCCCccccCccccCcchhhCchhheecceeEEEecccccccceeecCCcceEeccchhhheecccc
Confidence 999987421 1 134568899999999999999999999999999999964
No 173
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.77 E-value=7.5e-17 Score=125.51 Aligned_cols=170 Identities=18% Similarity=0.215 Sum_probs=129.3
Q ss_pred EEeccCCcccEEEEEEcccCCCCeEEEeecCCeEEEEeCCCCCCCCCCeeeeecceeeEEEeeeeeccccccccCCCCcc
Q 021291 55 SSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKD 134 (314)
Q Consensus 55 ~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 134 (314)
.+.+|. ++|..++|+|.+| ..+++||+|.+|.||++-.+.+.....
T Consensus 76 ~v~GHt--~~vLDi~w~PfnD-~vIASgSeD~~v~vW~IPe~~l~~~lt------------------------------- 121 (472)
T KOG0303|consen 76 LVCGHT--APVLDIDWCPFND-CVIASGSEDTKVMVWQIPENGLTRDLT------------------------------- 121 (472)
T ss_pred CccCcc--ccccccccCccCC-ceeecCCCCceEEEEECCCcccccCcc-------------------------------
Confidence 456788 4599999999855 899999999999999998765433111
Q ss_pred eeeccCCceeeecCCCCCC----ceeccCCCceEEEeecCcCeEEEEecCCCceeeeecccccCCCCCcCCCCCceeeeE
Q 021291 135 CYEREVGETVDTDSLCDSK----DDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAV 210 (314)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~g~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~ 210 (314)
.....+.+|+. ++|+|...++|+++|+ |.+|.+||+.+++.+.++. | ...++++
T Consensus 122 --------epvv~L~gH~rrVg~V~wHPtA~NVLlsag~-Dn~v~iWnv~tgeali~l~---------h----pd~i~S~ 179 (472)
T KOG0303|consen 122 --------EPVVELYGHQRRVGLVQWHPTAPNVLLSAGS-DNTVSIWNVGTGEALITLD---------H----PDMVYSM 179 (472)
T ss_pred --------cceEEEeecceeEEEEeecccchhhHhhccC-CceEEEEeccCCceeeecC---------C----CCeEEEE
Confidence 01112233333 6799999888886665 8999999999999887765 4 5589999
Q ss_pred EEecCCCCCCceEEEEeecCCcEEEEEccCCCCceEeeecCCc-ceEEEEEeCCCCeEEEec---CCCcEEEEecCCCee
Q 021291 211 QAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHLE-PVLCLSIDESCNGGISGG---ADQKIVLYNLDHSTY 286 (314)
Q Consensus 211 ~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~h~~-~v~~~~~~~~~~~l~s~s---~dg~i~iw~~~~~~~ 286 (314)
. |+-+ |. ++++.+.|+.|+|||.+. +.++.+-.+|.+ .-..+.|-.+|..+.||- .+..+-+||.+.-+.
T Consensus 180 s-fn~d---Gs-~l~TtckDKkvRv~dpr~-~~~v~e~~~heG~k~~Raifl~~g~i~tTGfsr~seRq~aLwdp~nl~e 253 (472)
T KOG0303|consen 180 S-FNRD---GS-LLCTTCKDKKVRVIDPRR-GTVVSEGVAHEGAKPARAIFLASGKIFTTGFSRMSERQIALWDPNNLEE 253 (472)
T ss_pred E-eccC---Cc-eeeeecccceeEEEcCCC-CcEeeecccccCCCcceeEEeccCceeeeccccccccceeccCcccccC
Confidence 8 9988 44 899999999999999998 888888888876 345667878887444432 477899998765543
No 174
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.77 E-value=2.7e-16 Score=115.02 Aligned_cols=213 Identities=17% Similarity=0.275 Sum_probs=146.5
Q ss_pred CCCCCCceEEecCCCCceeEEEEccCCCEEEEecCCCeEEEEeCCCCeE------EEEEe--ccC---CcccEEEEEEcc
Q 021291 4 RPPPPDPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRT------VSSSW--VHS---AAHGIVSVATGP 72 (314)
Q Consensus 4 ~~~~~~~~~~l~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~------~~~~~--~~~---~~~~v~~~~~~~ 72 (314)
.|+...++..+++|.++|+.++|. ..+|++|+. |.|+=|....... +...+ .+. .--.|.+|...|
T Consensus 48 ~~~gk~~iv~eqahdgpiy~~~f~--d~~Lls~gd-G~V~gw~W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP 124 (325)
T KOG0649|consen 48 EPPGKLKIVPEQAHDGPIYYLAFH--DDFLLSGGD-GLVYGWEWNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDP 124 (325)
T ss_pred CCCCCcceeeccccCCCeeeeeee--hhheeeccC-ceEEEeeehhhhhhccchhhhhhcCccccCcccCCccceeEecc
Confidence 455556777889999999999998 346777654 9999998764322 11111 111 012388999998
Q ss_pred cCCCCeEEEeecCCeEEEEeCCCCCCCCCCeeeeecceeeEEEeeeeeccccccccCCCCcceeeccCCceeeecCCCCC
Q 021291 73 SIGLNKVISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDS 152 (314)
Q Consensus 73 ~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (314)
..+.++.++.|+.++-||+++++... .+..++...+....
T Consensus 125 --~enSi~~AgGD~~~y~~dlE~G~i~r--~~rGHtDYvH~vv~------------------------------------ 164 (325)
T KOG0649|consen 125 --SENSILFAGGDGVIYQVDLEDGRIQR--EYRGHTDYVHSVVG------------------------------------ 164 (325)
T ss_pred --CCCcEEEecCCeEEEEEEecCCEEEE--EEcCCcceeeeeee------------------------------------
Confidence 66777777789999999999998744 44444444443311
Q ss_pred CceeccCCCceEEEeecCcCeEEEEecCCCceeeeecccccCCCCCcCCC----CCceeeeEEEecCCCCCCceEEEEee
Q 021291 153 KDDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSK----GRGMCMAVQAYLPSKSQGFVNVLAGY 228 (314)
Q Consensus 153 ~~~~~~~~~~~~~~~g~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~h~~~----~~~~~~~~~~~~p~~~~g~~~l~~g~ 228 (314)
-+..+ .++ +|++||++++||.++++++..+..- .|... ....+.+++ -+.+ ++++|+
T Consensus 165 ---R~~~~-qil--sG~EDGtvRvWd~kt~k~v~~ie~y------k~~~~lRp~~g~wigala-~~ed------WlvCGg 225 (325)
T KOG0649|consen 165 ---RNANG-QIL--SGAEDGTVRVWDTKTQKHVSMIEPY------KNPNLLRPDWGKWIGALA-VNED------WLVCGG 225 (325)
T ss_pred ---cccCc-cee--ecCCCccEEEEeccccceeEEeccc------cChhhcCcccCceeEEEe-ccCc------eEEecC
Confidence 12233 334 7999999999999999998877632 12111 223456665 4443 888886
Q ss_pred cCCcEEEEEccCCCCceEeeecCCcceEEEEEeCCCCeEEEecCCCcEEEEecCC
Q 021291 229 EDGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDH 283 (314)
Q Consensus 229 ~dg~i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~iw~~~~ 283 (314)
...+.+|.++. .++...+.- ..+|..+.|..+ .+++++..+.|.-|.+..
T Consensus 226 -Gp~lslwhLrs-se~t~vfpi-pa~v~~v~F~~d--~vl~~G~g~~v~~~~l~G 275 (325)
T KOG0649|consen 226 -GPKLSLWHLRS-SESTCVFPI-PARVHLVDFVDD--CVLIGGEGNHVQSYTLNG 275 (325)
T ss_pred -CCceeEEeccC-CCceEEEec-ccceeEeeeecc--eEEEeccccceeeeeecc
Confidence 45799999998 777777763 678889999887 678888888888887763
No 175
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.76 E-value=2.7e-15 Score=123.16 Aligned_cols=253 Identities=15% Similarity=0.153 Sum_probs=152.4
Q ss_pred ceEEecCCCCceeEEEEccCCCEEEEe-cCCCeEEEEeCCC-CeE--EEEEeccCCcccEEEEEEcccCCCCeEEEeec-
Q 021291 10 PVAVLRGHRASVTDVCFHQTKPILFAG-TTGGELRIWDTVQ-HRT--VSSSWVHSAAHGIVSVATGPSIGLNKVISQGR- 84 (314)
Q Consensus 10 ~~~~l~~h~~~v~~~~~~~~~~~l~s~-~~dg~v~iwd~~~-~~~--~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~- 84 (314)
.++++. +.+....++++|++++|+++ ..++.|.+|+++. ++. +.... .. .....++++| ++++|++++.
T Consensus 27 ~~~~~~-~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~-~~--~~p~~i~~~~--~g~~l~v~~~~ 100 (330)
T PRK11028 27 LLQVVD-VPGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAESP-LP--GSPTHISTDH--QGRFLFSASYN 100 (330)
T ss_pred eeeEEe-cCCCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeeeec-CC--CCceEEEECC--CCCEEEEEEcC
Confidence 455554 34667889999999988765 4588899999863 332 22222 12 2367899999 9898887765
Q ss_pred CCeEEEEeCCCCCCCCCCeeeeec-ceeeEEEeeeeeccccccccCCCCcceeeccCCceee-------ecCCCCCC--c
Q 021291 85 DGTVKCWDIENGGLSSNPSLTIKT-NSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVD-------TDSLCDSK--D 154 (314)
Q Consensus 85 dg~v~iwd~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~--~ 154 (314)
++.|.+|++++.....+....... ...+...+++................+|++.....+. ....+... +
T Consensus 101 ~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~~~~~~g~~p~~~ 180 (330)
T PRK11028 101 ANCVSVSPLDKDGIPVAPIQIIEGLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLVAQEPAEVTTVEGAGPRHM 180 (330)
T ss_pred CCeEEEEEECCCCCCCCceeeccCCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCcccccCCCceecCCCCCCceE
Confidence 889999999743222111111111 1223334444443333344445667777776533221 11112111 8
Q ss_pred eeccCCCceEEEeecCcCeEEEEecCC--Cc--eeeeecccccCCCCCcCC--CCCceeeeEEEecCCCCCCceEEEEee
Q 021291 155 DVPAEGPKYMAVAGEQLSEVEIWDLNT--AE--RCTRLHQNSCGGSPNFSS--KGRGMCMAVQAYLPSKSQGFVNVLAGY 228 (314)
Q Consensus 155 ~~~~~~~~~~~~~g~~d~~i~vwd~~~--~~--~~~~~~~~~~~~~~~h~~--~~~~~~~~~~~~~p~~~~g~~~l~~g~ 228 (314)
+|+|+|++++++ ...+++|.+||+.. ++ .+..+. .++. ........+. ++|+ |+ +++++.
T Consensus 181 ~~~pdg~~lyv~-~~~~~~v~v~~~~~~~~~~~~~~~~~--------~~p~~~~~~~~~~~i~-~~pd---g~-~lyv~~ 246 (330)
T PRK11028 181 VFHPNQQYAYCV-NELNSSVDVWQLKDPHGEIECVQTLD--------MMPADFSDTRWAADIH-ITPD---GR-HLYACD 246 (330)
T ss_pred EECCCCCEEEEE-ecCCCEEEEEEEeCCCCCEEEEEEEe--------cCCCcCCCCccceeEE-ECCC---CC-EEEEec
Confidence 999999887764 44479999999973 22 222222 1111 0111233465 9998 66 566654
Q ss_pred -cCCcEEEEEccCCCCceEeeecC---CcceEEEEEeCCCCeEEEecC-CCcEEEEecCC
Q 021291 229 -EDGSILVWDIRNPGIPLTAMKVH---LEPVLCLSIDESCNGGISGGA-DQKIVLYNLDH 283 (314)
Q Consensus 229 -~dg~i~vwd~~~~~~~~~~~~~h---~~~v~~~~~~~~~~~l~s~s~-dg~i~iw~~~~ 283 (314)
.++.|.+|++...+..+ .+.++ ......+.++|+|++|+++.. ++.|.+|+++.
T Consensus 247 ~~~~~I~v~~i~~~~~~~-~~~~~~~~~~~p~~~~~~~dg~~l~va~~~~~~v~v~~~~~ 305 (330)
T PRK11028 247 RTASLISVFSVSEDGSVL-SFEGHQPTETQPRGFNIDHSGKYLIAAGQKSHHISVYEIDG 305 (330)
T ss_pred CCCCeEEEEEEeCCCCeE-EEeEEEeccccCCceEECCCCCEEEEEEccCCcEEEEEEcC
Confidence 57899999997533222 22222 124567899999999987765 89999998863
No 176
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.76 E-value=2.4e-16 Score=130.50 Aligned_cols=216 Identities=15% Similarity=0.212 Sum_probs=158.9
Q ss_pred CCCCceEEecCCCCceeEEEEccCCCEEEEecCCCeEEEEeCCCCeEEEEEeccCCcccEEEEEEcccCCCCeEEEeecC
Q 021291 6 PPPDPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRD 85 (314)
Q Consensus 6 ~~~~~~~~l~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d 85 (314)
...++.+.+..-.+.|++++.+|.+..++.|+.||.+..++...++...........++|.+++|+| ++..+++|+.|
T Consensus 98 ~~lk~~~~~d~~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~--~~~~i~~Gs~D 175 (691)
T KOG2048|consen 98 HTLKQKYNIDSNGGAIWSIAINPENTILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNP--TGTKIAGGSID 175 (691)
T ss_pred ccCceeEEecCCCcceeEEEeCCccceEEeecCCceEEEEecCCceEEEEeecccccceEEEEEecC--CccEEEecccC
Confidence 3456777778888999999999999999999999988888888776655443344447799999999 98999999999
Q ss_pred CeEEEEeCCCCCCCCCCeeeeecce----eeEEEeeeeeccccccccCCCCcceeeccCCceeeecCCCCCCceeccCCC
Q 021291 86 GTVKCWDIENGGLSSNPSLTIKTNS----YHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGP 161 (314)
Q Consensus 86 g~v~iwd~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (314)
|.|++||...+.... ..+.+... ...+.+++. +-.++
T Consensus 176 g~Iriwd~~~~~t~~--~~~~~~d~l~k~~~~iVWSv~------------------------------------~Lrd~- 216 (691)
T KOG2048|consen 176 GVIRIWDVKSGQTLH--IITMQLDRLSKREPTIVWSVL------------------------------------FLRDS- 216 (691)
T ss_pred ceEEEEEcCCCceEE--EeeecccccccCCceEEEEEE------------------------------------EeecC-
Confidence 999999999876422 11111111 122222221 22444
Q ss_pred ceEEEeecCcCeEEEEecCCCceeeeecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEeecCCcEEEEEccCC
Q 021291 162 KYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNP 241 (314)
Q Consensus 162 ~~~~~~g~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~ 241 (314)
.++ +|...|+|.+||...+..+..+. .| ..-+.+++ -.+++ . .+++++.|+.|.-|.....
T Consensus 217 -tI~-sgDS~G~V~FWd~~~gTLiqS~~--------~h----~adVl~La-v~~~~---d-~vfsaGvd~~ii~~~~~~~ 277 (691)
T KOG2048|consen 217 -TIA-SGDSAGTVTFWDSIFGTLIQSHS--------CH----DADVLALA-VADNE---D-RVFSAGVDPKIIQYSLTTN 277 (691)
T ss_pred -cEE-EecCCceEEEEcccCcchhhhhh--------hh----hcceeEEE-EcCCC---C-eEEEccCCCceEEEEecCC
Confidence 243 78778999999999999988877 45 44677776 66653 3 8999999999988887753
Q ss_pred CC---ceEeeecCCcceEEEEEeCCCCeEEEecCCCcEEEEecCC
Q 021291 242 GI---PLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDH 283 (314)
Q Consensus 242 ~~---~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~iw~~~~ 283 (314)
.. .......|...|.+++..++ .|++|+.|..+.+-..+.
T Consensus 278 ~~~wv~~~~r~~h~hdvrs~av~~~--~l~sgG~d~~l~i~~s~~ 320 (691)
T KOG2048|consen 278 KSEWVINSRRDLHAHDVRSMAVIEN--ALISGGRDFTLAICSSRE 320 (691)
T ss_pred ccceeeeccccCCcccceeeeeecc--eEEecceeeEEEEccccc
Confidence 33 22334578889999999888 789999999888765544
No 177
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.75 E-value=7.3e-16 Score=112.77 Aligned_cols=195 Identities=16% Similarity=0.209 Sum_probs=136.5
Q ss_pred CceeEEEEccCCCEEEEecCCCeEEEEeCCCCeEEEEEeccCCcccEEEEEEcccCCCCeEEEeecCCeEEEEeCCCCCC
Q 021291 19 ASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGGL 98 (314)
Q Consensus 19 ~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~ 98 (314)
..|+++-..|..+-++.++.|+.++-||+++|+..+.+++|. +.|.++.--. ....+++|++||++++||.+++++
T Consensus 115 PeINam~ldP~enSi~~AgGD~~~y~~dlE~G~i~r~~rGHt--DYvH~vv~R~--~~~qilsG~EDGtvRvWd~kt~k~ 190 (325)
T KOG0649|consen 115 PEINAMWLDPSENSILFAGGDGVIYQVDLEDGRIQREYRGHT--DYVHSVVGRN--ANGQILSGAEDGTVRVWDTKTQKH 190 (325)
T ss_pred CccceeEeccCCCcEEEecCCeEEEEEEecCCEEEEEEcCCc--ceeeeeeecc--cCcceeecCCCccEEEEeccccce
Confidence 578999999977777777799999999999999999999999 5599998855 557899999999999999999987
Q ss_pred CCCCeeeeecceeeEEEeeeeeccccccccCCCCcceeeccCCceeeecCCCCCC---ceeccCCCceEEEeecCcCeEE
Q 021291 99 SSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSK---DDVPAEGPKYMAVAGEQLSEVE 175 (314)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~g~~d~~i~ 175 (314)
++ .+....++ .+ ++.|-+ .++.-+.+ .++ +|. ...+.
T Consensus 191 v~--~ie~yk~~--~~---------------------------------lRp~~g~wigala~~ed-Wlv-CGg-Gp~ls 230 (325)
T KOG0649|consen 191 VS--MIEPYKNP--NL---------------------------------LRPDWGKWIGALAVNED-WLV-CGG-GPKLS 230 (325)
T ss_pred eE--EeccccCh--hh---------------------------------cCcccCceeEEEeccCc-eEE-ecC-CCcee
Confidence 55 22222111 11 000000 22333333 343 444 47899
Q ss_pred EEecCCCceeeeecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEeecCCcEEEEEccCCCCceEeeecCCcce
Q 021291 176 IWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPV 255 (314)
Q Consensus 176 vwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~h~~~v 255 (314)
+|.++..++...|+. .+.+-.+. |..+ .++++++.+.|.-|.+. +..-..........
T Consensus 231 lwhLrsse~t~vfpi-------------pa~v~~v~-F~~d------~vl~~G~g~~v~~~~l~--Gvl~a~ip~~s~~c 288 (325)
T KOG0649|consen 231 LWHLRSSESTCVFPI-------------PARVHLVD-FVDD------CVLIGGEGNHVQSYTLN--GVLQANIPVESTAC 288 (325)
T ss_pred EEeccCCCceEEEec-------------ccceeEee-eecc------eEEEeccccceeeeeec--cEEEEeccCCccce
Confidence 999999999888873 33455555 7765 78888888899999887 55555555444555
Q ss_pred EEEEEeCC-CCeEEEecCCCcEEEE
Q 021291 256 LCLSIDES-CNGGISGGADQKIVLY 279 (314)
Q Consensus 256 ~~~~~~~~-~~~l~s~s~dg~i~iw 279 (314)
++..|+.. .++|-.++....+.|+
T Consensus 289 ~s~s~~~~p~k~~s~ag~s~~~~i~ 313 (325)
T KOG0649|consen 289 YSASWQTSPIKFISIAGFSNKLHIL 313 (325)
T ss_pred eeecccCCceEEEEecccceeeeee
Confidence 66666332 3455556666677665
No 178
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.74 E-value=2.1e-16 Score=118.40 Aligned_cols=203 Identities=17% Similarity=0.201 Sum_probs=144.2
Q ss_pred CCCCceeEEEEcc-CCCEEEEecCCCeEEEEeCCCCe---EEEEEeccCCcccEEEEEEcccCCCCeEEEeecCCeEEEE
Q 021291 16 GHRASVTDVCFHQ-TKPILFAGTTGGELRIWDTVQHR---TVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCW 91 (314)
Q Consensus 16 ~h~~~v~~~~~~~-~~~~l~s~~~dg~v~iwd~~~~~---~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~v~iw 91 (314)
.+.+++++..|+. +.+++.+++-|-+..|||++++. ....+-.|..+ |..++|... ..+.|++++.||.|++|
T Consensus 148 ~~~aPlTSFDWne~dp~~igtSSiDTTCTiWdie~~~~~~vkTQLIAHDKE--V~DIaf~~~-s~~~FASvgaDGSvRmF 224 (364)
T KOG0290|consen 148 EFCAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIETGVSGTVKTQLIAHDKE--VYDIAFLKG-SRDVFASVGADGSVRMF 224 (364)
T ss_pred ccCCcccccccccCCcceeEeecccCeEEEEEEeeccccceeeEEEecCcc--eeEEEeccC-ccceEEEecCCCcEEEE
Confidence 3567899999998 88899999999999999999863 35556678844 999999982 34689999999999999
Q ss_pred eCCCCCCCCCCeeeeecceeeEEEeeeeeccccccccCCCCcceeeccCCceeeecCCCCCCceeccCCCceEEEeecCc
Q 021291 92 DIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQL 171 (314)
Q Consensus 92 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d 171 (314)
|++..+... .+++-........ . ++|++...+++++-+...
T Consensus 225 DLR~leHST-IIYE~p~~~~pLl------------------------------R--------LswnkqDpnymATf~~dS 265 (364)
T KOG0290|consen 225 DLRSLEHST-IIYEDPSPSTPLL------------------------------R--------LSWNKQDPNYMATFAMDS 265 (364)
T ss_pred Eecccccce-EEecCCCCCCcce------------------------------e--------eccCcCCchHHhhhhcCC
Confidence 999764321 0111111000000 0 668888888777656556
Q ss_pred CeEEEEecCCCc-eeeeecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEeecCCcEEEEEccCCCC-----ce
Q 021291 172 SEVEIWDLNTAE-RCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGI-----PL 245 (314)
Q Consensus 172 ~~i~vwd~~~~~-~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~-----~~ 245 (314)
..|.+.|+|... .+..+. +| .+.+..++ |.|..+ . .|++++.|..+.+||+..... ++
T Consensus 266 ~~V~iLDiR~P~tpva~L~--------~H----~a~VNgIa-WaPhS~--~-hictaGDD~qaliWDl~q~~~~~~~dPi 329 (364)
T KOG0290|consen 266 NKVVILDIRVPCTPVARLR--------NH----QASVNGIA-WAPHSS--S-HICTAGDDCQALIWDLQQMPRENGEDPI 329 (364)
T ss_pred ceEEEEEecCCCcceehhh--------cC----cccccceE-ecCCCC--c-eeeecCCcceEEEEecccccccCCCCch
Confidence 789999999654 566666 67 45667776 999843 2 899999999999999986433 33
Q ss_pred EeeecCCcceEEEEEeC-CCCeEEEecCCCcEEE
Q 021291 246 TAMKVHLEPVLCLSIDE-SCNGGISGGADQKIVL 278 (314)
Q Consensus 246 ~~~~~h~~~v~~~~~~~-~~~~l~s~s~dg~i~i 278 (314)
..+. -.+.|+.+.|++ ...+++.+. ++++.+
T Consensus 330 lay~-a~~EVNqi~Ws~~~~Dwiai~~-~kklei 361 (364)
T KOG0290|consen 330 LAYT-AGGEVNQIQWSSSQPDWIAICF-GKKLEI 361 (364)
T ss_pred hhhh-ccceeeeeeecccCCCEEEEEe-cCeeeE
Confidence 3344 367899999963 445666654 444544
No 179
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.74 E-value=2.5e-16 Score=124.75 Aligned_cols=254 Identities=13% Similarity=0.141 Sum_probs=174.2
Q ss_pred CceEEecCCCCceeEEEEcc-CCCEEEEecCCCeEEEEeCCCCeEEEEEeccCCcccEEEEEEcccCCCCeEEEeecCCe
Q 021291 9 DPVAVLRGHRASVTDVCFHQ-TKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGT 87 (314)
Q Consensus 9 ~~~~~l~~h~~~v~~~~~~~-~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~ 87 (314)
.-+..+..|..+|.++.|+| +-..+++.++||+|++-|++++..-..+........+..+.|+. +...++.+..=|.
T Consensus 225 d~v~~f~~hs~~Vs~l~F~P~n~s~i~ssSyDGtiR~~D~~~~i~e~v~s~~~d~~~fs~~d~~~--e~~~vl~~~~~G~ 302 (498)
T KOG4328|consen 225 DGVYLFTPHSGPVSGLKFSPANTSQIYSSSYDGTIRLQDFEGNISEEVLSLDTDNIWFSSLDFSA--ESRSVLFGDNVGN 302 (498)
T ss_pred CceEEeccCCccccceEecCCChhheeeeccCceeeeeeecchhhHHHhhcCccceeeeeccccC--CCccEEEeecccc
Confidence 45778889999999999999 66789999999999999998764333333222224577888888 6677777777779
Q ss_pred EEEEeCCCCCCCCCCeeeeecceeeEEEeeeeeccccccccCCCCcceeeccCCceee---ecCCCCCC----ceeccCC
Q 021291 88 VKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVD---TDSLCDSK----DDVPAEG 160 (314)
Q Consensus 88 v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~----~~~~~~~ 160 (314)
..+||.+++...-. .+.++...+....+.+................+|+++...... .....|.. ..|||.+
T Consensus 303 f~~iD~R~~~s~~~-~~~lh~kKI~sv~~NP~~p~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~ 381 (498)
T KOG4328|consen 303 FNVIDLRTDGSEYE-NLRLHKKKITSVALNPVCPWFLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSG 381 (498)
T ss_pred eEEEEeecCCccch-hhhhhhcccceeecCCCCchheeecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCC
Confidence 99999998764221 2344555666666677766666666777778899987654322 23334444 8899999
Q ss_pred CceEEEeecCcCeEEEEecC----CCceeeeecccccCCCCCcCCCCC--ceeeeEEEecCCCCCCceEEEEeecCCcEE
Q 021291 161 PKYMAVAGEQLSEVEIWDLN----TAERCTRLHQNSCGGSPNFSSKGR--GMCMAVQAYLPSKSQGFVNVLAGYEDGSIL 234 (314)
Q Consensus 161 ~~~~~~~g~~d~~i~vwd~~----~~~~~~~~~~~~~~~~~~h~~~~~--~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~ 234 (314)
..+ + +.+.|..|+|||.. .-.+..++. |..... -..... .|.|+.+ ++++|..-..|-
T Consensus 382 gtl-~-TT~~D~~IRv~dss~~sa~~~p~~~I~---------Hn~~t~RwlT~fKA-~W~P~~~----li~vg~~~r~ID 445 (498)
T KOG4328|consen 382 GTL-L-TTCQDNEIRVFDSSCISAKDEPLGTIP---------HNNRTGRWLTPFKA-AWDPDYN----LIVVGRYPRPID 445 (498)
T ss_pred Cce-E-eeccCCceEEeecccccccCCccceee---------ccCcccccccchhh-eeCCCcc----EEEEeccCccee
Confidence 884 4 45568999999983 334444444 322111 122233 3999744 999999999999
Q ss_pred EEEccCCCCceEeeecCCc-ceEE-EEEeCCCCeEEEe-cCCCcEEEEecC
Q 021291 235 VWDIRNPGIPLTAMKVHLE-PVLC-LSIDESCNGGISG-GADQKIVLYNLD 282 (314)
Q Consensus 235 vwd~~~~~~~~~~~~~h~~-~v~~-~~~~~~~~~l~s~-s~dg~i~iw~~~ 282 (314)
|+|-.. ++.+.++..... .|.+ ..|+|-+..+++| +..|.|+||--+
T Consensus 446 v~~~~~-~q~v~el~~P~~~tI~~vn~~HP~~~~~~aG~~s~Gki~vft~k 495 (498)
T KOG4328|consen 446 VFDGNG-GQMVCELHDPESSTIPSVNEFHPMRDTLAAGGNSSGKIYVFTNK 495 (498)
T ss_pred EEcCCC-CEEeeeccCccccccccceeecccccceeccCCccceEEEEecC
Confidence 999886 776766544333 5555 4679988745555 457888888644
No 180
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.74 E-value=6.7e-16 Score=134.04 Aligned_cols=220 Identities=19% Similarity=0.297 Sum_probs=150.8
Q ss_pred CCceeEEEEccCCCEEEEecCCCeEEEEeCCCCeEEEEEeccC-CcccEEEEEEcccCCCCeEEEeecCCeEEEEeCCCC
Q 021291 18 RASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHS-AAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENG 96 (314)
Q Consensus 18 ~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~ 96 (314)
..+-..+.|+|-...++++...-.|+|||.+.++.+..|..+. ....|+.+.+-...|..++++|+.||.|+||+--..
T Consensus 1064 ~~~pk~~~~hpf~p~i~~ad~r~~i~vwd~e~~~~l~~F~n~~~~~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~~ 1143 (1387)
T KOG1517|consen 1064 NQPPKTLKFHPFEPQIAAADDRERIRVWDWEKGRLLNGFDNGAFPDTRVSDLELINEQDDALLLTASSDGVIRIWKDYAD 1143 (1387)
T ss_pred CCCCceeeecCCCceeEEcCCcceEEEEecccCceeccccCCCCCCCccceeeeecccchhheeeeccCceEEEeccccc
Confidence 3345678888877788888866789999999999988886543 224699999987667789999999999999975433
Q ss_pred CCCCCCeeeeecceeeEEEeeeeeccccccccCCCCcceeeccCCceeeecCCCCCCceeccCCCceEEEeecCcCeEEE
Q 021291 97 GLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQLSEVEI 176 (314)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~v 176 (314)
... ++.+ ...+....... ....+...+ ++|.....++++ +|. -..|+|
T Consensus 1144 ~~~-~~eL--------VTaw~~Ls~~~---~~~r~~~~v------------------~dWqQ~~G~Ll~-tGd-~r~IRI 1191 (1387)
T KOG1517|consen 1144 KWK-KPEL--------VTAWSSLSDQL---PGARGTGLV------------------VDWQQQSGHLLV-TGD-VRSIRI 1191 (1387)
T ss_pred ccC-Ccee--------EEeeccccccC---ccCCCCCee------------------eehhhhCCeEEe-cCC-eeEEEE
Confidence 210 0010 01111000000 000000000 456666555554 565 489999
Q ss_pred EecCCCceeeeecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEeecCCcEEEEEccCCCC--ceEeeecCCcc
Q 021291 177 WDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGI--PLTAMKVHLEP 254 (314)
Q Consensus 177 wd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~--~~~~~~~h~~~ 254 (314)
||.........++. + ....++++. ++-..|. .+++|..||.|++||.|.... .+...+.|+..
T Consensus 1192 WDa~~E~~~~diP~-------~----s~t~vTaLS---~~~~~gn-~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~ 1256 (1387)
T KOG1517|consen 1192 WDAHKEQVVADIPY-------G----SSTLVTALS---ADLVHGN-IIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDV 1256 (1387)
T ss_pred EecccceeEeeccc-------C----CCccceeec---ccccCCc-eEEEeecCCceEEeecccCCccccceeecccCCc
Confidence 99998887777763 1 233455544 3333355 999999999999999986433 67788889887
Q ss_pred --eEEEEEeCCCCe-EEEecCCCcEEEEecCCC
Q 021291 255 --VLCLSIDESCNG-GISGGADQKIVLYNLDHS 284 (314)
Q Consensus 255 --v~~~~~~~~~~~-l~s~s~dg~i~iw~~~~~ 284 (314)
|..+.+.++|.- |++||.||.|++||++..
T Consensus 1257 ~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~ 1289 (1387)
T KOG1517|consen 1257 EPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMS 1289 (1387)
T ss_pred ccceeEEeecCCCcceeeeccCCeEEEEecccC
Confidence 999999776655 999999999999999984
No 181
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.74 E-value=7.1e-16 Score=117.05 Aligned_cols=215 Identities=14% Similarity=0.168 Sum_probs=159.0
Q ss_pred eEEecCCCCceeEEEEccCCCEEEEecCCCeEEEEeCCCC---eEEEEEeccCCcccEEEEEEcccCCCCeEEEeecCCe
Q 021291 11 VAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQH---RTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGT 87 (314)
Q Consensus 11 ~~~l~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~---~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~ 87 (314)
+..+.--..+|+|.+|++|+..+|.+-....|.||..... +...+++.|.. .|+++.|+| ..+.|++|+.|..
T Consensus 3 ~~~~~~~~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~--~vtgvdWap--~snrIvtcs~drn 78 (361)
T KOG1523|consen 3 VVVFHRLLEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDK--IVTGVDWAP--KSNRIVTCSHDRN 78 (361)
T ss_pred eEEeeeccCceeeeeecCCCceEEeccCCceEEEEEecCCCCceeceehhhhCc--ceeEEeecC--CCCceeEccCCCC
Confidence 3455555689999999999999999999999999997654 46677888884 499999999 8899999999999
Q ss_pred EEEEeC-CCCCCCCCCeeeee-cceeeEEEeeeeeccccccccCCCCcceeeccCCceeeecCCCCCCceeccCCCceEE
Q 021291 88 VKCWDI-ENGGLSSNPSLTIK-TNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMA 165 (314)
Q Consensus 88 v~iwd~-~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (314)
-++|.. ..++... .+.+. .+....+ +.|+|.++.+.
T Consensus 79 ayVw~~~~~~~Wkp--tlvLlRiNrAAt~---------------------------------------V~WsP~enkFA- 116 (361)
T KOG1523|consen 79 AYVWTQPSGGTWKP--TLVLLRINRAATC---------------------------------------VKWSPKENKFA- 116 (361)
T ss_pred ccccccCCCCeecc--ceeEEEeccceee---------------------------------------EeecCcCceEE-
Confidence 999999 4444322 32222 2222222 56999987554
Q ss_pred EeecCcCeEEEEecCCCceeeeecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEeecCCcEEEEEccC-----
Q 021291 166 VAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRN----- 240 (314)
Q Consensus 166 ~~g~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~----- 240 (314)
.|+..+.|.||=.+..+.--.-+ .-..++++.+.++. |+|++- ++++|+.|+..+||..--
T Consensus 117 -VgSgar~isVcy~E~ENdWWVsK--------hikkPirStv~sld-WhpnnV----LlaaGs~D~k~rVfSayIK~Vde 182 (361)
T KOG1523|consen 117 -VGSGARLISVCYYEQENDWWVSK--------HIKKPIRSTVTSLD-WHPNNV----LLAAGSTDGKCRVFSAYIKGVDE 182 (361)
T ss_pred -eccCccEEEEEEEecccceehhh--------hhCCccccceeeee-ccCCcc----eecccccCcceeEEEEeeecccc
Confidence 35545888888776544321111 11233577889998 999733 899999999999997521
Q ss_pred ------------CCCceEeeecCCcceEEEEEeCCCCeEEEecCCCcEEEEecCCCe
Q 021291 241 ------------PGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHST 285 (314)
Q Consensus 241 ------------~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~iw~~~~~~ 285 (314)
.++++.++....+.|..+.|+|+|..|+-.+.|..+.+=|...+.
T Consensus 183 kpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG~~lawv~Hds~v~~~da~~p~ 239 (361)
T KOG1523|consen 183 KPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSGNRLAWVGHDSTVSFVDAAGPS 239 (361)
T ss_pred CCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCCCCEeeEecCCCceEEeecCCCc
Confidence 023344555567899999999999999999999999999988775
No 182
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.74 E-value=6.4e-16 Score=118.47 Aligned_cols=262 Identities=15% Similarity=0.180 Sum_probs=169.0
Q ss_pred CCceeEEEEccCCCEEEEecCCCeEEEEeCCCCe-----EEEEEeccCC----------cccEEEEEEcccCCCCeEEEe
Q 021291 18 RASVTDVCFHQTKPILFAGTTGGELRIWDTVQHR-----TVSSSWVHSA----------AHGIVSVATGPSIGLNKVISQ 82 (314)
Q Consensus 18 ~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~-----~~~~~~~~~~----------~~~v~~~~~~~~~~~~~l~s~ 82 (314)
.+-|.++.|...|.+||||..+|.|.++.-+... ....++.|.. ...|..+.|.+..+...++..
T Consensus 25 adiis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FLls 104 (433)
T KOG1354|consen 25 ADIISAVEFDHYGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFLLS 104 (433)
T ss_pred hcceeeEEeecccceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEEEe
Confidence 4578899999999999999999999999754322 2334444432 135889999985555678888
Q ss_pred ecCCeEEEEeCCCCCCCC------------------CCeeee--------------ecceeeEEEeeeeeccccccccCC
Q 021291 83 GRDGTVKCWDIENGGLSS------------------NPSLTI--------------KTNSYHFCKLSLVKEPYANAKQAN 130 (314)
Q Consensus 83 ~~dg~v~iwd~~~~~~~~------------------~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~ 130 (314)
..|.+|++|.+....... .|+... ..+..+...++..........++.
T Consensus 105 tNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~Et~lSADd 184 (433)
T KOG1354|consen 105 TNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDKETFLSADD 184 (433)
T ss_pred cCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCccceEeeccc
Confidence 899999999986543322 111110 112333344444444445555556
Q ss_pred CCcceeeccCCc--eeeecCCCCCC---------ceeccCCCceEEEeecCcCeEEEEecCCCce----eeeecccccCC
Q 021291 131 EPKDCYEREVGE--TVDTDSLCDSK---------DDVPAEGPKYMAVAGEQLSEVEIWDLNTAER----CTRLHQNSCGG 195 (314)
Q Consensus 131 ~~~~~~~~~~~~--~~~~~~~~~~~---------~~~~~~~~~~~~~~g~~d~~i~vwd~~~~~~----~~~~~~~~~~~ 195 (314)
.....|.+.-.. .-......+.- ..|+|..-++++.+.+ .|+|++-|+|...+ ...+..+..+.
T Consensus 185 LRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSS-KGtIrLcDmR~~aLCd~hsKlfEepedp~ 263 (433)
T KOG1354|consen 185 LRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSS-KGTIRLCDMRQSALCDAHSKLFEEPEDPS 263 (433)
T ss_pred eeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecC-CCcEEEeechhhhhhcchhhhhccccCCc
Confidence 666666654322 11111122211 6789988888877666 69999999995432 11222221112
Q ss_pred CCCcCCCCCceeeeEEEecCCCCCCceEEEEeecCCcEEEEEccCCCCceEeeecCC------------cce---EEEEE
Q 021291 196 SPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHL------------EPV---LCLSI 260 (314)
Q Consensus 196 ~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~h~------------~~v---~~~~~ 260 (314)
....-.+.-..+..+. |+++ |+ ++++-.. -+|++||+....+++.++.-|. +.| ..++|
T Consensus 264 ~rsffseiIsSISDvK-Fs~s---Gr-yilsRDy-ltvk~wD~nme~~pv~t~~vh~~lr~kLc~lYEnD~IfdKFec~~ 337 (433)
T KOG1354|consen 264 SRSFFSEIISSISDVK-FSHS---GR-YILSRDY-LTVKLWDLNMEAKPVETYPVHEYLRSKLCSLYENDAIFDKFECSW 337 (433)
T ss_pred chhhHHHHhhhhhceE-EccC---Cc-EEEEecc-ceeEEEeccccCCcceEEeehHhHHHHHHHHhhccchhheeEEEE
Confidence 2222223445677787 9987 76 7777643 5899999976688888888774 233 35788
Q ss_pred eCCCCeEEEecCCCcEEEEecCCCee
Q 021291 261 DESCNGGISGGADQKIVLYNLDHSTY 286 (314)
Q Consensus 261 ~~~~~~l~s~s~dg~i~iw~~~~~~~ 286 (314)
+.++.+++|||....+++++...|..
T Consensus 338 sg~~~~v~TGsy~n~frvf~~~~gsk 363 (433)
T KOG1354|consen 338 SGNDSYVMTGSYNNVFRVFNLARGSK 363 (433)
T ss_pred cCCcceEecccccceEEEecCCCCcc
Confidence 99999999999999999999766643
No 183
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.73 E-value=1.4e-17 Score=140.90 Aligned_cols=250 Identities=16% Similarity=0.227 Sum_probs=174.5
Q ss_pred ceEEecCCCCceeEEEEccCCCEEEEecCCCeEEEEeCCCCeEEEEEeccCCcccEEEEEEcccCCCCeEEEeecCCeEE
Q 021291 10 PVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVK 89 (314)
Q Consensus 10 ~~~~l~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~v~ 89 (314)
.++.|.||..+|.|+.|...|.++++|+.|..|+||..+++.++...++|.+. |+.++.+. +..+++++|.|..|+
T Consensus 182 ~ikrLlgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~lAs~rGhs~d--itdlavs~--~n~~iaaaS~D~vIr 257 (1113)
T KOG0644|consen 182 NIKRLLGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETARCLASCRGHSGD--ITDLAVSS--NNTMIAAASNDKVIR 257 (1113)
T ss_pred HHHHHHhhhhheeeeeeccccceEeecCccceeeeeeccchhhhccCCCCccc--cchhccch--hhhhhhhcccCceEE
Confidence 35567799999999999999999999999999999999999999999999966 99999998 778899999999999
Q ss_pred EEeCCCCCCCCCCeeeeecceeeEEEeeeeeccccccccCCCCcceeeccCC--cee---------------------ee
Q 021291 90 CWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVG--ETV---------------------DT 146 (314)
Q Consensus 90 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~---------------------~~ 146 (314)
+|.+.++..+. ++..+........|++.. .....+...+|+.+-. ... ..
T Consensus 258 vWrl~~~~pvs--vLrghtgavtaiafsP~~-----sss~dgt~~~wd~r~~~~~y~prp~~~~~~~~~~s~~~~~~~~~ 330 (1113)
T KOG0644|consen 258 VWRLPDGAPVS--VLRGHTGAVTAIAFSPRA-----SSSDDGTCRIWDARLEPRIYVPRPLKFTEKDLVDSILFENNGDR 330 (1113)
T ss_pred EEecCCCchHH--HHhccccceeeeccCccc-----cCCCCCceEeccccccccccCCCCCCcccccceeeeeccccccc
Confidence 99999987655 444455555544444433 1222223333333200 000 00
Q ss_pred cCCC--------CCC--ceeccCC----------CceEEEeecCcCeEEEEecCCCceeeeecccccCCCCCcCCCCCce
Q 021291 147 DSLC--------DSK--DDVPAEG----------PKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGM 206 (314)
Q Consensus 147 ~~~~--------~~~--~~~~~~~----------~~~~~~~g~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~ 206 (314)
...+ |.- ++|.... ..+.+ +.-.+-.+.+|++.++.....+. +|.+ .
T Consensus 331 f~Tgs~d~ea~n~e~~~l~~~~~~lif~t~ssd~~~~~~-~ar~~~~~~vwnl~~g~l~H~l~--------ghsd----~ 397 (1113)
T KOG0644|consen 331 FLTGSRDGEARNHEFEQLAWRSNLLIFVTRSSDLSSIVV-TARNDHRLCVWNLYTGQLLHNLM--------GHSD----E 397 (1113)
T ss_pred cccccCCcccccchhhHhhhhccceEEEeccccccccce-eeeeeeEeeeeecccchhhhhhc--------cccc----c
Confidence 0000 000 2222111 11111 23335668889999998877776 6755 4
Q ss_pred eeeEEEecCCCCCCceEEEEeecCCcEEEEEccCCCCceEeeecCCcceEEEEEeCCCCeEEEecCCCcEEEEecCCCee
Q 021291 207 CMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTY 286 (314)
Q Consensus 207 ~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~iw~~~~~~~ 286 (314)
.+.+. ++|-++ ....+++.||...|||+-. +.+++........+..-+|+++|..++....-|.+.|.....++.
T Consensus 398 ~yvLd-~Hpfn~---ri~msag~dgst~iwdi~e-g~pik~y~~gh~kl~d~kFSqdgts~~lsd~hgql~i~g~gqs~s 472 (1113)
T KOG0644|consen 398 VYVLD-VHPFNP---RIAMSAGYDGSTIIWDIWE-GIPIKHYFIGHGKLVDGKFSQDGTSIALSDDHGQLYILGTGQSKS 472 (1113)
T ss_pred eeeee-ecCCCc---HhhhhccCCCceEeeeccc-CCcceeeecccceeeccccCCCCceEecCCCCCceEEeccCCCcc
Confidence 55555 777633 2778899999999999998 777766553355667779999999988888889999998876655
Q ss_pred eE
Q 021291 287 VL 288 (314)
Q Consensus 287 ~~ 288 (314)
..
T Consensus 473 ~k 474 (1113)
T KOG0644|consen 473 QK 474 (1113)
T ss_pred cc
Confidence 43
No 184
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.73 E-value=2.4e-15 Score=128.12 Aligned_cols=269 Identities=17% Similarity=0.192 Sum_probs=171.6
Q ss_pred ecCCCCceeEEEEccCCCEEEEecCCCeEEEEeCCCCeEEEEEeccCCcccEEEEEEcccCCC-CeEEEeecCCeEEEEe
Q 021291 14 LRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGL-NKVISQGRDGTVKCWD 92 (314)
Q Consensus 14 l~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~~l~s~~~dg~v~iwd 92 (314)
+-|-...-..-.|++|+++++....+ .|.||...+++++..+..|. .+++.+.+.|.... .++++++.||.|++||
T Consensus 12 lgg~n~~~~~avfSnD~k~l~~~~~~-~V~VyS~~Tg~~i~~l~~~~--a~l~s~~~~~~~~~~~~~~~~sl~G~I~vwd 88 (792)
T KOG1963|consen 12 LGGRNGNKSPAVFSNDAKFLFLCTGN-FVKVYSTATGECITSLEDHT--APLTSVIVLPSSENANYLIVCSLDGTIRVWD 88 (792)
T ss_pred eccccceecccccccCCcEEEEeeCC-EEEEEecchHhhhhhccccc--CccceeeecCCCccceEEEEEecCccEEEec
Confidence 44444444456789999988876655 79999999999999999998 45999999985332 4677999999999999
Q ss_pred CCCCCCCCCCeeeeecceeeEEEeeeeeccccccc----------c-----CCCCcceeeccCCcee-eecCCCC---CC
Q 021291 93 IENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAK----------Q-----ANEPKDCYEREVGETV-DTDSLCD---SK 153 (314)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~-----~~~~~~~~~~~~~~~~-~~~~~~~---~~ 153 (314)
...+.+++ .+....... ...+.+......... . .........+...... ......+ ..
T Consensus 89 ~~~~~Llk--t~~~~~~v~-~~~~~~~~a~~s~~~~~s~~~~~~~~~~s~~~~~q~~~~~~~t~~~~~~d~~~~~~~~~~ 165 (792)
T KOG1963|consen 89 WSDGELLK--TFDNNLPVH-ALVYKPAQADISANVYVSVEDYSILTTFSKKLSKQSSRFVLATFDSAKGDFLKEHQEPKS 165 (792)
T ss_pred CCCcEEEE--EEecCCcee-EEEechhHhCccceeEeecccceeeeecccccccceeeeEeeeccccchhhhhhhcCCcc
Confidence 99988765 222222211 111111111100000 0 0000111111111100 0111112 22
Q ss_pred ceeccCCCceEEEeecCcCeEEEEecCCCceeeeecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEeecCCcE
Q 021291 154 DDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSI 233 (314)
Q Consensus 154 ~~~~~~~~~~~~~~g~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i 233 (314)
+.+++.|+...++- +..+.+|+...... ..... -....| .-.+.+.+ ++|+ ++ ++++|..||.|
T Consensus 166 I~~~~~ge~~~i~~---~~~~~~~~v~~~~~-~~~~~---~~~~~H----tf~~t~~~-~spn---~~-~~Aa~d~dGrI 229 (792)
T KOG1963|consen 166 IVDNNSGEFKGIVH---MCKIHIYFVPKHTK-HTSSR---DITVHH----TFNITCVA-LSPN---ER-YLAAGDSDGRI 229 (792)
T ss_pred EEEcCCceEEEEEE---eeeEEEEEecccce-eeccc---hhhhhh----cccceeEE-eccc---cc-eEEEeccCCcE
Confidence 77888887665432 46789998877551 11110 001123 22356666 9998 55 99999999999
Q ss_pred EEEEccC---CCCceEeeecCCcceEEEEEeCCCCeEEEecCCCcEEEEecCCCeeeEe------eeeeeecCCCceece
Q 021291 234 LVWDIRN---PGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTYVLF------GIGFVCDQEGNKFGT 304 (314)
Q Consensus 234 ~vwd~~~---~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~iw~~~~~~~~~~------~~~~~~~~~~~~~~~ 304 (314)
.+|.--. ...-...+.-|.+.|++++|+++|.+|.||+.+|.+.+|.++++++.+. +..+..+|++..+..
T Consensus 230 ~vw~d~~~~~~~~t~t~lHWH~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~T~~kqfLPRLgs~I~~i~vS~ds~~~sl 309 (792)
T KOG1963|consen 230 LVWRDFGSSDDSETCTLLHWHHDEVNSLSFSSDGAYLLSGGREGVLVLWQLETGKKQFLPRLGSPILHIVVSPDSDLYSL 309 (792)
T ss_pred EEEeccccccccccceEEEecccccceeEEecCCceEeecccceEEEEEeecCCCcccccccCCeeEEEEEcCCCCeEEE
Confidence 9996432 1234567888999999999999999999999999999999999986553 566777788776554
No 185
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.73 E-value=1.2e-16 Score=130.72 Aligned_cols=203 Identities=18% Similarity=0.226 Sum_probs=153.6
Q ss_pred eEEecCCCCceeEEEEccCCCEEEEecCC---CeEEEEeCCCCeEEEEEeccCCcccEEEEEEcccCCCCeEEEeecCCe
Q 021291 11 VAVLRGHRASVTDVCFHQTKPILFAGTTG---GELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGT 87 (314)
Q Consensus 11 ~~~l~~h~~~v~~~~~~~~~~~l~s~~~d---g~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~ 87 (314)
++..-.|...|..+.|+..|.||++...+ ..|.|+++...+...-|+... +.|.++.|+| ...+|+.++. ..
T Consensus 514 v~~~I~~~k~i~~vtWHrkGDYlatV~~~~~~~~VliHQLSK~~sQ~PF~ksk--G~vq~v~FHP--s~p~lfVaTq-~~ 588 (733)
T KOG0650|consen 514 VCIVIKHPKSIRQVTWHRKGDYLATVMPDSGNKSVLIHQLSKRKSQSPFRKSK--GLVQRVKFHP--SKPYLFVATQ-RS 588 (733)
T ss_pred eEEEEecCCccceeeeecCCceEEEeccCCCcceEEEEecccccccCchhhcC--CceeEEEecC--CCceEEEEec-cc
Confidence 34445689999999999999999997654 479999998776666665555 3499999999 7677777775 58
Q ss_pred EEEEeCCCCCCCCCCeeeeecceeeEEEeeeeeccccccccCCCCcceeeccCCceeeecCCCCCCceeccCCCceEEEe
Q 021291 88 VKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVA 167 (314)
Q Consensus 88 v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (314)
|+|||+....+++ .+......... ++++|.|.+++ .
T Consensus 589 vRiYdL~kqelvK----kL~tg~kwiS~--------------------------------------msihp~GDnli--~ 624 (733)
T KOG0650|consen 589 VRIYDLSKQELVK----KLLTGSKWISS--------------------------------------MSIHPNGDNLI--L 624 (733)
T ss_pred eEEEehhHHHHHH----HHhcCCeeeee--------------------------------------eeecCCCCeEE--E
Confidence 9999998866544 22222221111 55889999887 4
Q ss_pred ecCcCeEEEEecCCCc-eeeeecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEeecCCcEEEEEccC------
Q 021291 168 GEQLSEVEIWDLNTAE-RCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRN------ 240 (314)
Q Consensus 168 g~~d~~i~vwd~~~~~-~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~------ 240 (314)
|+.|+.+..||+.-.. +.+++. -| ...+.+++ |++.-+ ++++|+.||++.|+.-.-
T Consensus 625 gs~d~k~~WfDldlsskPyk~lr--------~H----~~avr~Va-~H~ryP----Lfas~sdDgtv~Vfhg~VY~Dl~q 687 (733)
T KOG0650|consen 625 GSYDKKMCWFDLDLSSKPYKTLR--------LH----EKAVRSVA-FHKRYP----LFASGSDDGTVIVFHGMVYNDLLQ 687 (733)
T ss_pred ecCCCeeEEEEcccCcchhHHhh--------hh----hhhhhhhh-hccccc----eeeeecCCCcEEEEeeeeehhhhc
Confidence 7789999999998554 444454 45 34667776 998755 899999999999985431
Q ss_pred -C-CCceEeeecCCcc----eEEEEEeCCCCeEEEecCCCcEEEE
Q 021291 241 -P-GIPLTAMKVHLEP----VLCLSIDESCNGGISGGADQKIVLY 279 (314)
Q Consensus 241 -~-~~~~~~~~~h~~~----v~~~~~~~~~~~l~s~s~dg~i~iw 279 (314)
+ -.++..+.+|... |..+.|+|...+|++++.||+|++|
T Consensus 688 npliVPlK~L~gH~~~~~~gVLd~~wHP~qpWLfsAGAd~tirlf 732 (733)
T KOG0650|consen 688 NPLIVPLKRLRGHEKTNDLGVLDTIWHPRQPWLFSAGADGTIRLF 732 (733)
T ss_pred CCceEeeeeccCceeecccceEeecccCCCceEEecCCCceEEee
Confidence 0 2357788899765 9999999999999999999999998
No 186
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.73 E-value=1.5e-15 Score=133.71 Aligned_cols=227 Identities=16% Similarity=0.276 Sum_probs=153.7
Q ss_pred CCceEEecCCCCceeEEEEccC-CCEEEEecCCCeEEEEeCCCC-------eEEEEEeccCCcccEEEEEEcccCCCCeE
Q 021291 8 PDPVAVLRGHRASVTDVCFHQT-KPILFAGTTGGELRIWDTVQH-------RTVSSSWVHSAAHGIVSVATGPSIGLNKV 79 (314)
Q Consensus 8 ~~~~~~l~~h~~~v~~~~~~~~-~~~l~s~~~dg~v~iwd~~~~-------~~~~~~~~~~~~~~v~~~~~~~~~~~~~l 79 (314)
+..+..|..|...|..++.+++ +.+++|||.||+|++||..+- +...++.... .++.++...+ .++.+
T Consensus 1038 G~lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~--sr~~~vt~~~--~~~~~ 1113 (1431)
T KOG1240|consen 1038 GILVAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEG--SRVEKVTMCG--NGDQF 1113 (1431)
T ss_pred ceEeehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccC--CceEEEEecc--CCCeE
Confidence 3568888889999999999884 499999999999999998642 2222332222 5699999999 89999
Q ss_pred EEeecCCeEEEEeCCCCCCCCCCeeeee--cceeeEEEeeeeeccccccccCCCCcceeeccCCceeeecCCCCCCceec
Q 021291 80 ISQGRDGTVKCWDIENGGLSSNPSLTIK--TNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVP 157 (314)
Q Consensus 80 ~s~~~dg~v~iwd~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (314)
|.++.||.|++.+++............. ......+..++ .++.
T Consensus 1114 Av~t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m-----------------------------------~a~~ 1158 (1431)
T KOG1240|consen 1114 AVSTKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSM-----------------------------------HAFT 1158 (1431)
T ss_pred EEEcCCCeEEEEEccccccccceeeeeecccccCCCceEEe-----------------------------------eccc
Confidence 9999999999999986321110000000 00000000000 1122
Q ss_pred cCCCceEEEeecCcCeEEEEecCCCceeeeecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEeecCCcEEEEE
Q 021291 158 AEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWD 237 (314)
Q Consensus 158 ~~~~~~~~~~g~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd 237 (314)
...+..+++.+..-+.|..||+++.....+++. ....|.+++++ .+|. +. +++.|+..|.+.+||
T Consensus 1159 ~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~----------~~~hG~vTSi~-idp~---~~-WlviGts~G~l~lWD 1223 (1431)
T KOG1240|consen 1159 AIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKN----------QLRHGLVTSIV-IDPW---CN-WLVIGTSRGQLVLWD 1223 (1431)
T ss_pred ccccceeEEEEEeccceEEecchhhhhHHhhhc----------CccccceeEEE-ecCC---ce-EEEEecCCceEEEEE
Confidence 222222223455568899999998877666552 22467888887 9987 44 999999999999999
Q ss_pred ccCCCCceEeee-cCCcceEEEEEeCCC---CeEEEec--CCCcEEEEecCCCeeeEe
Q 021291 238 IRNPGIPLTAMK-VHLEPVLCLSIDESC---NGGISGG--ADQKIVLYNLDHSTYVLF 289 (314)
Q Consensus 238 ~~~~~~~~~~~~-~h~~~v~~~~~~~~~---~~l~s~s--~dg~i~iw~~~~~~~~~~ 289 (314)
+|- +.++..+. .+..+|+.+..++-. ...++++ ..+.|.+|++.++.+.+.
T Consensus 1224 LRF-~~~i~sw~~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn~~~g~~~~v 1280 (1431)
T KOG1240|consen 1224 LRF-RVPILSWEHPARAPIRHVWLCPTYPQESVSVSAGSSSNNEVSTWNMETGLRQTV 1280 (1431)
T ss_pred eec-CceeecccCcccCCcceEEeeccCCCCceEEEecccCCCceeeeecccCcceEE
Confidence 997 77777765 556788888886533 3444444 467899999999966554
No 187
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.73 E-value=5.7e-15 Score=114.23 Aligned_cols=199 Identities=15% Similarity=0.244 Sum_probs=143.3
Q ss_pred ceeEEEEccCCCEEEEecCC--CeEEEEeCCCCeEEEEEeccCCcccEEEEEEcccCCCCeEEEeecCCeEEEEeCCCCC
Q 021291 20 SVTDVCFHQTKPILFAGTTG--GELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGG 97 (314)
Q Consensus 20 ~v~~~~~~~~~~~l~s~~~d--g~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~ 97 (314)
.|..+-|+.. ++|..+.+ +.+++.+++++..+..+.-. .+|.++.++. ++|+.+-.+ .|.|||+++.+
T Consensus 48 ~IvEmLFSSS--LvaiV~~~qpr~Lkv~~~Kk~~~ICe~~fp---t~IL~VrmNr----~RLvV~Lee-~IyIydI~~Mk 117 (391)
T KOG2110|consen 48 SIVEMLFSSS--LVAIVSIKQPRKLKVVHFKKKTTICEIFFP---TSILAVRMNR----KRLVVCLEE-SIYIYDIKDMK 117 (391)
T ss_pred EEEEeecccc--eeEEEecCCCceEEEEEcccCceEEEEecC---CceEEEEEcc----ceEEEEEcc-cEEEEecccce
Confidence 3445556533 45544443 45899998888777766544 4599999977 677777765 49999999987
Q ss_pred CCCCCeeeeecceeeEEEeeeeeccccccccCCCCcceeeccCCceeeecCCCCCCceeccCCCceEEEeecCcCeEEEE
Q 021291 98 LSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQLSEVEIW 177 (314)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~vw 177 (314)
.... +.+...++...++++ ++..+.++..-.....|.|.+|
T Consensus 118 lLhT-I~t~~~n~~gl~AlS--------------------------------------~n~~n~ylAyp~s~t~GdV~l~ 158 (391)
T KOG2110|consen 118 LLHT-IETTPPNPKGLCALS--------------------------------------PNNANCYLAYPGSTTSGDVVLF 158 (391)
T ss_pred eehh-hhccCCCccceEeec--------------------------------------cCCCCceEEecCCCCCceEEEE
Confidence 6551 111122333333322 2233334433233345889999
Q ss_pred ecCCCceeeeecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEeecCCc-EEEEEccCCCCceEeeecC--Ccc
Q 021291 178 DLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGS-ILVWDIRNPGIPLTAMKVH--LEP 254 (314)
Q Consensus 178 d~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~-i~vwd~~~~~~~~~~~~~h--~~~ 254 (314)
|..+.+....+. +| .+.+-+++ |+|+ |. +||++++.|+ |||+.+.+ ++.+.++.-- ...
T Consensus 159 d~~nl~~v~~I~--------aH----~~~lAala-fs~~---G~-llATASeKGTVIRVf~v~~-G~kl~eFRRG~~~~~ 220 (391)
T KOG2110|consen 159 DTINLQPVNTIN--------AH----KGPLAALA-FSPD---GT-LLATASEKGTVIRVFSVPE-GQKLYEFRRGTYPVS 220 (391)
T ss_pred EcccceeeeEEE--------ec----CCceeEEE-ECCC---CC-EEEEeccCceEEEEEEcCC-ccEeeeeeCCceeeE
Confidence 999999998888 77 66788887 9998 55 9999999998 89999998 8888888733 236
Q ss_pred eEEEEEeCCCCeEEEecCCCcEEEEecCCCe
Q 021291 255 VLCLSIDESCNGGISGGADQKIVLYNLDHST 285 (314)
Q Consensus 255 v~~~~~~~~~~~l~s~s~dg~i~iw~~~~~~ 285 (314)
|.+++|++++++|++.|..++|++|.++...
T Consensus 221 IySL~Fs~ds~~L~~sS~TeTVHiFKL~~~~ 251 (391)
T KOG2110|consen 221 IYSLSFSPDSQFLAASSNTETVHIFKLEKVS 251 (391)
T ss_pred EEEEEECCCCCeEEEecCCCeEEEEEecccc
Confidence 8899999999999999999999999988654
No 188
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.72 E-value=4.1e-15 Score=115.03 Aligned_cols=219 Identities=11% Similarity=0.158 Sum_probs=149.7
Q ss_pred CCCceeEEEEccCCCEEEEecCCCeEEEEeCCCCeEEEEEeccCCcccEEEEEEcccCCCCeEEEeecCC--eEEEEeCC
Q 021291 17 HRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDG--TVKCWDIE 94 (314)
Q Consensus 17 h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg--~v~iwd~~ 94 (314)
-...+..+.|+.+...|..|+.|| .++|+.+......... .....|.-+-|+. .+++..+.+. .+++.++.
T Consensus 4 ~~~ti~~~~~Nqd~~~lsvGs~~G-yk~~~~~~~~k~~~~~--~~~~~IvEmLFSS----SLvaiV~~~qpr~Lkv~~~K 76 (391)
T KOG2110|consen 4 KKPTINFIGFNQDSTLLSVGSKDG-YKIFSCSPFEKCFSKD--TEGVSIVEMLFSS----SLVAIVSIKQPRKLKVVHFK 76 (391)
T ss_pred CCcceeeeeeccceeEEEccCCCc-eeEEecCchHHhhccc--CCCeEEEEeeccc----ceeEEEecCCCceEEEEEcc
Confidence 345677888999999999999998 6899877644422221 2224577888876 5666555543 48888887
Q ss_pred CCCCCCCCeeeeecceeeEEEeeeeeccccccccCCCCcceeeccCCceeeecCCCCCCceeccCCCceEEEeecCcCeE
Q 021291 95 NGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQLSEV 174 (314)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i 174 (314)
.+..+.+ +.+...- +++--+-++++++ = ...|
T Consensus 77 k~~~ICe--~~fpt~I-------------------------------------------L~VrmNr~RLvV~-L--ee~I 108 (391)
T KOG2110|consen 77 KKTTICE--IFFPTSI-------------------------------------------LAVRMNRKRLVVC-L--EESI 108 (391)
T ss_pred cCceEEE--EecCCce-------------------------------------------EEEEEccceEEEE-E--cccE
Confidence 6654331 1111100 1122223455543 2 3559
Q ss_pred EEEecCCCceeeeecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEE--eecCCcEEEEEccCCCCceEeeecCC
Q 021291 175 EIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLA--GYEDGSILVWDIRNPGIPLTAMKVHL 252 (314)
Q Consensus 175 ~vwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~--g~~dg~i~vwd~~~~~~~~~~~~~h~ 252 (314)
+|||+++.+.+.++.. -+. ....+.+++|+.. +. +++- ....|.|.+||+.+ -+++..+.+|.
T Consensus 109 yIydI~~MklLhTI~t--------~~~----n~~gl~AlS~n~~-n~-ylAyp~s~t~GdV~l~d~~n-l~~v~~I~aH~ 173 (391)
T KOG2110|consen 109 YIYDIKDMKLLHTIET--------TPP----NPKGLCALSPNNA-NC-YLAYPGSTTSGDVVLFDTIN-LQPVNTINAHK 173 (391)
T ss_pred EEEecccceeehhhhc--------cCC----CccceEeeccCCC-Cc-eEEecCCCCCceEEEEEccc-ceeeeEEEecC
Confidence 9999999999988872 111 1111224666633 33 5553 23468999999998 88999999999
Q ss_pred cceEEEEEeCCCCeEEEecCCCc-EEEEecCCCeeeEe---------eeeeeecCCCceecee
Q 021291 253 EPVLCLSIDESCNGGISGGADQK-IVLYNLDHSTYVLF---------GIGFVCDQEGNKFGTT 305 (314)
Q Consensus 253 ~~v~~~~~~~~~~~l~s~s~dg~-i~iw~~~~~~~~~~---------~~~~~~~~~~~~~~~~ 305 (314)
+++-+++|+++|.+|||+|..|+ |||+.+.+|++++. +..+++++++..++.+
T Consensus 174 ~~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~eFRRG~~~~~IySL~Fs~ds~~L~~s 236 (391)
T KOG2110|consen 174 GPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEFRRGTYPVSIYSLSFSPDSQFLAAS 236 (391)
T ss_pred CceeEEEECCCCCEEEEeccCceEEEEEEcCCccEeeeeeCCceeeEEEEEEECCCCCeEEEe
Confidence 99999999999999999999996 89999999988874 4557788888877653
No 189
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.72 E-value=2.1e-15 Score=127.63 Aligned_cols=222 Identities=12% Similarity=0.096 Sum_probs=139.5
Q ss_pred ceEEecCCCCceeEEEEccCCCEEEEecCC---CeEEEEeCCCCeEE--EEEeccCCcccEEEEEEcccCCCCeEEEee-
Q 021291 10 PVAVLRGHRASVTDVCFHQTKPILFAGTTG---GELRIWDTVQHRTV--SSSWVHSAAHGIVSVATGPSIGLNKVISQG- 83 (314)
Q Consensus 10 ~~~~l~~h~~~v~~~~~~~~~~~l~s~~~d---g~v~iwd~~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~- 83 (314)
..+.+..|...+...+|+|||+.|+.++.+ ..|++||+.+++.. ..+.++ ...++|+| |++.|+.++
T Consensus 195 ~~~~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~~g~-----~~~~~wSP--DG~~La~~~~ 267 (429)
T PRK01742 195 NQFIVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVASFRGH-----NGAPAFSP--DGSRLAFASS 267 (429)
T ss_pred CceEeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEecCCCc-----cCceeECC--CCCEEEEEEe
Confidence 345677788899999999999999887654 47999999887543 222222 45789999 999888764
Q ss_pred cCCeEEEE--eCCCCCCCCCCeeeeecceeeEEEeeeeeccccccccCCCCcceeeccCCceeeecCCCCCCceeccCCC
Q 021291 84 RDGTVKCW--DIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGP 161 (314)
Q Consensus 84 ~dg~v~iw--d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (314)
.+|.+.|| |+.++... .+....... ...+|+|+|+
T Consensus 268 ~~g~~~Iy~~d~~~~~~~-----~lt~~~~~~--------------------------------------~~~~wSpDG~ 304 (429)
T PRK01742 268 KDGVLNIYVMGANGGTPS-----QLTSGAGNN--------------------------------------TEPSWSPDGQ 304 (429)
T ss_pred cCCcEEEEEEECCCCCeE-----eeccCCCCc--------------------------------------CCEEECCCCC
Confidence 68876665 55554321 111110000 0056999998
Q ss_pred ceEEEeecCcCeEEEEecCCCceeeeecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEeecCCcEEEEEccCC
Q 021291 162 KYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNP 241 (314)
Q Consensus 162 ~~~~~~g~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~ 241 (314)
.++++ +..++...||++.......... ++ .+ .... |+|+ |+ .|+..+.++ +.+||+.+
T Consensus 305 ~i~f~-s~~~g~~~I~~~~~~~~~~~~l--------~~----~~--~~~~-~SpD---G~-~ia~~~~~~-i~~~Dl~~- 362 (429)
T PRK01742 305 SILFT-SDRSGSPQVYRMSASGGGASLV--------GG----RG--YSAQ-ISAD---GK-TLVMINGDN-VVKQDLTS- 362 (429)
T ss_pred EEEEE-ECCCCCceEEEEECCCCCeEEe--------cC----CC--CCcc-CCCC---CC-EEEEEcCCC-EEEEECCC-
Confidence 77654 4456778888765322211221 12 11 2344 9998 55 666666554 66699987
Q ss_pred CCceEeeecCCcceEEEEEeCCCCeEEEecCCCcEEEEecC--CCeeeEeeeeeeecCCCceeceeeccc
Q 021291 242 GIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLD--HSTYVLFGIGFVCDQEGNKFGTTWHIR 309 (314)
Q Consensus 242 ~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~iw~~~--~~~~~~~~~~~~~~~~~~~~~~~w~~~ 309 (314)
+........+ ....+.|+|+|++|+.++.++.+.+|++. .++....+.+ .++......|++.
T Consensus 363 g~~~~lt~~~--~~~~~~~sPdG~~i~~~s~~g~~~~l~~~~~~G~~~~~l~~----~~g~~~~p~wsp~ 426 (429)
T PRK01742 363 GSTEVLSSTF--LDESPSISPNGIMIIYSSTQGLGKVLQLVSADGRFKARLPG----SDGQVKFPAWSPY 426 (429)
T ss_pred CCeEEecCCC--CCCCceECCCCCEEEEEEcCCCceEEEEEECCCCceEEccC----CCCCCCCcccCCC
Confidence 5433222222 33567899999999999999988888763 4555444432 3455556677764
No 190
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.72 E-value=3.2e-14 Score=120.80 Aligned_cols=251 Identities=22% Similarity=0.387 Sum_probs=173.5
Q ss_pred EecCCCCceeEEEEccCCCEEEEecCCCeEEEEeCCCCe-EEEEEeccCCcccEEEEEE-cccCCCC-eEEEeec-CCeE
Q 021291 13 VLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHR-TVSSSWVHSAAHGIVSVAT-GPSIGLN-KVISQGR-DGTV 88 (314)
Q Consensus 13 ~l~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~-~~~~~~~~~~~~~v~~~~~-~~~~~~~-~l~s~~~-dg~v 88 (314)
.+.+|...+.++.|.+.+..++.++.|+.+.+|+...+. ....+..... ..+..+.+ .+ ++. .++..+. |+.+
T Consensus 60 ~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~--~~~~~~~~~~~~d~~~ 136 (466)
T COG2319 60 LLRGHEDSITSIAFSPDGELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHD-SSVSKLALSSP--DGNSILLASSSLDGTV 136 (466)
T ss_pred eeeeccceEEEEEECCCCcEEEEecCCCcEEEEEcCCCceeEEEEeccCC-CceeeEEEECC--CcceEEeccCCCCccE
Confidence 467899999999999999999999999999999998876 6666666432 24777777 66 766 5555444 9999
Q ss_pred EEEeCCC-CCCCCCCeeeeecceeeEEEeeeeecccccccc-CCCCcceeeccCCceeeecCCCCCC----ceeccCCCc
Q 021291 89 KCWDIEN-GGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQ-ANEPKDCYEREVGETVDTDSLCDSK----DDVPAEGPK 162 (314)
Q Consensus 89 ~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~ 162 (314)
.+||... ..... .+..+........+.+... ...... .......|+....... ..+.+|.. ++|+|++..
T Consensus 137 ~~~~~~~~~~~~~--~~~~~~~~v~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~ 212 (466)
T COG2319 137 KLWDLSTPGKLIR--TLEGHSESVTSLAFSPDGK-LLASGSSLDGTIKLWDLRTGKPL-STLAGHTDPVSSLAFSPDGGL 212 (466)
T ss_pred EEEEecCCCeEEE--EEecCcccEEEEEECCCCC-EEEecCCCCCceEEEEcCCCceE-EeeccCCCceEEEEEcCCcce
Confidence 9999987 33221 2222333333333433333 111122 2555666666653322 22333444 888888873
Q ss_pred eEEEeecCcCeEEEEecCCCceee-eecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEeecCCcEEEEEccCC
Q 021291 163 YMAVAGEQLSEVEIWDLNTAERCT-RLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNP 241 (314)
Q Consensus 163 ~~~~~g~~d~~i~vwd~~~~~~~~-~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~ 241 (314)
++++++.|+.|++||...+.... .+. +|.... .. . |+|++ . ++++++.|+.+++|+.+..
T Consensus 213 -~~~~~~~d~~i~~wd~~~~~~~~~~~~--------~~~~~~----~~-~-~~~~~---~-~~~~~~~d~~~~~~~~~~~ 273 (466)
T COG2319 213 -LIASGSSDGTIRLWDLSTGKLLRSTLS--------GHSDSV----VS-S-FSPDG---S-LLASGSSDGTIRLWDLRSS 273 (466)
T ss_pred -EEEEecCCCcEEEEECCCCcEEeeecC--------CCCcce----eE-e-ECCCC---C-EEEEecCCCcEEEeeecCC
Confidence 33355779999999988777766 455 553321 11 3 99984 3 7889999999999999974
Q ss_pred CCceEeeecCCcceEEEEEeCCCCeEEEecCCCcEEEEecCCCeeeEe
Q 021291 242 GIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTYVLF 289 (314)
Q Consensus 242 ~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~iw~~~~~~~~~~ 289 (314)
...+..+.+|...|.++.|+|++..+++++.|+.+.+|+.........
T Consensus 274 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~ 321 (466)
T COG2319 274 SSLLRTLSGHSSSVLSVAFSPDGKLLASGSSDGTVRLWDLETGKLLSS 321 (466)
T ss_pred CcEEEEEecCCccEEEEEECCCCCEEEEeeCCCcEEEEEcCCCceEEE
Confidence 443555578899999999999888888899999999999887765544
No 191
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.71 E-value=3.5e-16 Score=121.96 Aligned_cols=253 Identities=15% Similarity=0.148 Sum_probs=164.1
Q ss_pred eEEecCCCCceeEEEEccCCCEEEEecCCCeEEEEeCCC------CeEEEEEeccCCcccEEEEEEcccCCCCeEEEeec
Q 021291 11 VAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQ------HRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGR 84 (314)
Q Consensus 11 ~~~l~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~------~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~ 84 (314)
.+-+.+|.+.|+++.|+.++++|++|+.|..+++|+++. .+.+.. .+|.+...|.|++|.. ...++++|..
T Consensus 49 qKD~~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~-~~~~H~SNIF~L~F~~--~N~~~~SG~~ 125 (609)
T KOG4227|consen 49 QKDVREHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGV-MEHPHRSNIFSLEFDL--ENRFLYSGER 125 (609)
T ss_pred hhhhhhhccccceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCcee-ccCccccceEEEEEcc--CCeeEecCCC
Confidence 345678999999999999999999999999999999864 244443 3444446699999998 7789999999
Q ss_pred CCeEEEEeCCCCCCCCCCeeeeecceeeEEEeeeeecc---ccccccCCCCcceeeccCCcee-eecCCCCCC-----ce
Q 021291 85 DGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEP---YANAKQANEPKDCYEREVGETV-DTDSLCDSK-----DD 155 (314)
Q Consensus 85 dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-----~~ 155 (314)
+++|.+-|+++.+.+- ...........+.+...+ ........+.+.+|+++..... .-.+..... +.
T Consensus 126 ~~~VI~HDiEt~qsi~----V~~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~~~F~t~~ 201 (609)
T KOG4227|consen 126 WGTVIKHDIETKQSIY----VANENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQNPISLVLPANSGKNFYTAE 201 (609)
T ss_pred cceeEeeecccceeee----eecccCcccceeecccCCCCceEEEEecCceEEEEeccCCCCCCceeeecCCCccceeee
Confidence 9999999999876432 222222122222222222 2333444556677777665422 222233322 78
Q ss_pred eccCCCceEEEeecCcCeEEEEecCCCce-eeeecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEeecCCcEE
Q 021291 156 VPAEGPKYMAVAGEQLSEVEIWDLNTAER-CTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSIL 234 (314)
Q Consensus 156 ~~~~~~~~~~~~g~~d~~i~vwd~~~~~~-~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~ 234 (314)
|+|....++++..+ .+-+-+||.+.... +...... .+-+.+ ...-+.+. |+|+ |. .+++--....-.
T Consensus 202 F~P~~P~Li~~~~~-~~G~~~~D~R~~~~~~~~~~~~-----~~L~~~-~~~~M~~~-~~~~---G~-Q~msiRR~~~P~ 269 (609)
T KOG4227|consen 202 FHPETPALILVNSE-TGGPNVFDRRMQARPVYQRSMF-----KGLPQE-NTEWMGSL-WSPS---GN-QFMSIRRGKCPL 269 (609)
T ss_pred ecCCCceeEEeccc-cCCCCceeeccccchHHhhhcc-----ccCccc-chhhhhee-eCCC---CC-eehhhhccCCCE
Confidence 89999888886555 57799999986543 2221100 011111 11224555 9998 54 455555555666
Q ss_pred EEEccCCCCceEeeecCC-------cceEEEEEeCCCCeEEEecCCCcEEEEecCCC
Q 021291 235 VWDIRNPGIPLTAMKVHL-------EPVLCLSIDESCNGGISGGADQKIVLYNLDHS 284 (314)
Q Consensus 235 vwd~~~~~~~~~~~~~h~-------~~v~~~~~~~~~~~l~s~s~dg~i~iw~~~~~ 284 (314)
+||+-+...++..+. |. ..+.+++|-.+.. ++|||.+=.|++|.+...
T Consensus 270 ~~D~~S~R~~V~k~D-~N~~GY~N~~T~KS~~F~~D~~-v~tGSD~~~i~~WklP~~ 324 (609)
T KOG4227|consen 270 YFDFISQRCFVLKSD-HNPNGYCNIKTIKSMTFIDDYT-VATGSDHWGIHIWKLPRA 324 (609)
T ss_pred EeeeecccceeEecc-CCCCcceeeeeeeeeeeeccee-eeccCcccceEEEecCCC
Confidence 788876344444443 22 2577888877654 899999999999998644
No 192
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.70 E-value=2.5e-16 Score=129.84 Aligned_cols=209 Identities=15% Similarity=0.241 Sum_probs=136.7
Q ss_pred CCceeEEEEcc-CCCEEEEecCCCeEEEEeCCCC-------eEEEEEeccCCcccEEEEEEcccCCCCeEEEeecCCeEE
Q 021291 18 RASVTDVCFHQ-TKPILFAGTTGGELRIWDTVQH-------RTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVK 89 (314)
Q Consensus 18 ~~~v~~~~~~~-~~~~l~s~~~dg~v~iwd~~~~-------~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~v~ 89 (314)
...|+.+.|.| |...||.++.||.|++|.+..+ .....+.+|... |+++.|+|- ..+.|++++.|-+|+
T Consensus 627 gt~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~~tPe~~lt~h~eK--I~slRfHPL-AadvLa~asyd~Ti~ 703 (1012)
T KOG1445|consen 627 GTLVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPENEMTPEKILTIHGEK--ITSLRFHPL-AADVLAVASYDSTIE 703 (1012)
T ss_pred CceeeecccCCCChHHeeecccCceEEEEEeccCCCCcccCCcceeeecccce--EEEEEecch-hhhHhhhhhccceee
Confidence 45799999999 8889999999999999998753 234567778844 999999995 457899999999999
Q ss_pred EEeCCCCCCCCCCeeeeecceeeEEEeeeeeccccccccCCCCcceeeccCCceeeecCCCCCCceeccCCCceEEEeec
Q 021291 90 CWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGE 169 (314)
Q Consensus 90 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 169 (314)
+||+.+++... .+..+.... |. ++|+|+|+.+. +-+
T Consensus 704 lWDl~~~~~~~----~l~gHtdqI--f~------------------------------------~AWSpdGr~~A--tVc 739 (1012)
T KOG1445|consen 704 LWDLANAKLYS----RLVGHTDQI--FG------------------------------------IAWSPDGRRIA--TVC 739 (1012)
T ss_pred eeehhhhhhhh----eeccCcCce--eE------------------------------------EEECCCCccee--eee
Confidence 99999986533 222221111 11 67999998654 444
Q ss_pred CcCeEEEEecCCCceeeeecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEee---cCCcEEEEEccCCC-Cce
Q 021291 170 QLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGY---EDGSILVWDIRNPG-IPL 245 (314)
Q Consensus 170 ~d~~i~vwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~---~dg~i~vwd~~~~~-~~~ 245 (314)
.||+|++|..++++....-. . .+.......+. |.-+ |+.++++|. ....|.+||..+.. .++
T Consensus 740 KDg~~rVy~Prs~e~pv~Eg---------~-gpvgtRgARi~-wacd---gr~viv~Gfdk~SeRQv~~Y~Aq~l~~~pl 805 (1012)
T KOG1445|consen 740 KDGTLRVYEPRSREQPVYEG---------K-GPVGTRGARIL-WACD---GRIVIVVGFDKSSERQVQMYDAQTLDLRPL 805 (1012)
T ss_pred cCceEEEeCCCCCCCccccC---------C-CCccCcceeEE-EEec---CcEEEEecccccchhhhhhhhhhhccCCcc
Confidence 69999999999876432211 1 11222233333 5544 773444442 23568899877532 344
Q ss_pred EeeecCCcc-eEEEEEeCCCC-eEEEecCCCcEEEEecCCCeee
Q 021291 246 TAMKVHLEP-VLCLSIDESCN-GGISGGADQKIVLYNLDHSTYV 287 (314)
Q Consensus 246 ~~~~~h~~~-v~~~~~~~~~~-~l~s~s~dg~i~iw~~~~~~~~ 287 (314)
.+..--..+ +.--.+++|.. +++||-.|..|.+|++-....-
T Consensus 806 ~t~~lDvaps~LvP~YD~Ds~~lfltGKGD~~v~~yEv~~esPy 849 (1012)
T KOG1445|consen 806 YTQVLDVAPSPLVPHYDYDSNVLFLTGKGDRFVNMYEVIYESPY 849 (1012)
T ss_pred eeeeecccCccccccccCCCceEEEecCCCceEEEEEecCCCce
Confidence 433211111 11112355544 5688889999999998765543
No 193
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.70 E-value=1.2e-14 Score=120.77 Aligned_cols=205 Identities=13% Similarity=0.163 Sum_probs=126.7
Q ss_pred CCCCCceEEecCCCCceeEEEEccCCCEEEEecCCCeEEEEeCCCCeEEEEEe---------------------------
Q 021291 5 PPPPDPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSW--------------------------- 57 (314)
Q Consensus 5 ~~~~~~~~~l~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~--------------------------- 57 (314)
+..+..+++|+||++.|.|++|+.||+.+|+|+.|..|.+|+..-.-.+ .+.
T Consensus 40 ~ndG~llqtLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~klEG~L-kYSH~D~IQCMsFNP~~h~LasCsLsdFgl 118 (1081)
T KOG1538|consen 40 TSDGTLLQPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKLEGIL-KYSHNDAIQCMSFNPITHQLASCSLSDFGL 118 (1081)
T ss_pred CCCcccccccccccceEEEEEEccCCceeccCCCceeEEEeccccccee-eeccCCeeeEeecCchHHHhhhcchhhccc
Confidence 3445678999999999999999999999999999999999985421111 110
Q ss_pred ---------ccCCcccEEEEEEcccCCCCeEEEeecCCeEEEEeCCCCCCCCCCeeeeec-ceeeEEEeeeeeccccccc
Q 021291 58 ---------VHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGGLSSNPSLTIKT-NSYHFCKLSLVKEPYANAK 127 (314)
Q Consensus 58 ---------~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 127 (314)
.|....+|.+++|.. ||++|+.|-.+|+|.|-+-...+. ..+.. .......+++.+.+.....
T Consensus 119 WS~~qK~V~K~kss~R~~~CsWtn--DGqylalG~~nGTIsiRNk~gEek-----~~I~Rpgg~Nspiwsi~~~p~sg~G 191 (1081)
T KOG1538|consen 119 WSPEQKSVSKHKSSSRIICCSWTN--DGQYLALGMFNGTISIRNKNGEEK-----VKIERPGGSNSPIWSICWNPSSGEG 191 (1081)
T ss_pred cChhhhhHHhhhhheeEEEeeecC--CCcEEEEeccCceEEeecCCCCcc-----eEEeCCCCCCCCceEEEecCCCCCC
Confidence 122223455555555 899999999999999886543321 12221 2223333444443322211
Q ss_pred cCCCCcceeeccCCc---eeeecCCC------CCC--ceeccCCCceEEEeecCcCeEEEEecCCCceeeeecccccCCC
Q 021291 128 QANEPKDCYEREVGE---TVDTDSLC------DSK--DDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGS 196 (314)
Q Consensus 128 ~~~~~~~~~~~~~~~---~~~~~~~~------~~~--~~~~~~~~~~~~~~g~~d~~i~vwd~~~~~~~~~~~~~~~~~~ 196 (314)
......+.+....- .+...+.+ ... +++.++|+++++ |+.|+.+.+|. +.|-.+-++..
T Consensus 192 -~~di~aV~DW~qTLSFy~LsG~~Igk~r~L~FdP~CisYf~NGEy~Li--GGsdk~L~~fT-R~GvrLGTvg~------ 261 (1081)
T KOG1538|consen 192 -RNDILAVADWGQTLSFYQLSGKQIGKDRALNFDPCCISYFTNGEYILL--GGSDKQLSLFT-RDGVRLGTVGE------ 261 (1081)
T ss_pred -ccceEEEEeccceeEEEEecceeecccccCCCCchhheeccCCcEEEE--ccCCCceEEEe-ecCeEEeeccc------
Confidence 11111111211100 11111111 111 777899998775 44489999996 45655555431
Q ss_pred CCcCCCCCceeeeEEEecCCCCCCceEEEEeecCCcEEEEEc
Q 021291 197 PNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDI 238 (314)
Q Consensus 197 ~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~ 238 (314)
....++.++ ..|+ ++ .++.|+.||+|..|++
T Consensus 262 ------~D~WIWtV~-~~PN---sQ-~v~~GCqDGTiACyNl 292 (1081)
T KOG1538|consen 262 ------QDSWIWTVQ-AKPN---SQ-YVVVGCQDGTIACYNL 292 (1081)
T ss_pred ------cceeEEEEE-EccC---Cc-eEEEEEccCeeehhhh
Confidence 356899998 9998 55 8999999999998875
No 194
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.69 E-value=4.4e-14 Score=119.94 Aligned_cols=212 Identities=26% Similarity=0.493 Sum_probs=155.0
Q ss_pred CCceEEecCCCCceeEEEEccCCCEEEEecC-CCeEEEEeCCCCeEEEEEeccCCcccEEEEEEcccCCCC-eEEEeecC
Q 021291 8 PDPVAVLRGHRASVTDVCFHQTKPILFAGTT-GGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLN-KVISQGRD 85 (314)
Q Consensus 8 ~~~~~~l~~h~~~v~~~~~~~~~~~l~s~~~-dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~l~s~~~d 85 (314)
......+.+|...|.+++|+|++.++++++. |+.+++|+..+++.+..+..|.. .|.+++|+| ++. .+++++.|
T Consensus 145 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~v~~~~~~~--~~~~~~~~~~~d 220 (466)
T COG2319 145 GKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTD--PVSSLAFSP--DGGLLIASGSSD 220 (466)
T ss_pred CeEEEEEecCcccEEEEEECCCCCEEEecCCCCCceEEEEcCCCceEEeeccCCC--ceEEEEEcC--CcceEEEEecCC
Confidence 3667788899999999999999998988886 99999999998888888888874 499999998 877 55566999
Q ss_pred CeEEEEeCCCCCCCCCCeeeeecceeeEEEeeeeeccccccccCCCCcceeeccCCceeeecCCCCCCceeccCCCceEE
Q 021291 86 GTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMA 165 (314)
Q Consensus 86 g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (314)
+.|++||...+..... .+..+..... ..|++++. +++
T Consensus 221 ~~i~~wd~~~~~~~~~---~~~~~~~~~~---------------------------------------~~~~~~~~-~~~ 257 (466)
T COG2319 221 GTIRLWDLSTGKLLRS---TLSGHSDSVV---------------------------------------SSFSPDGS-LLA 257 (466)
T ss_pred CcEEEEECCCCcEEee---ecCCCCccee---------------------------------------EeECCCCC-EEE
Confidence 9999998875443210 0111111000 13778874 343
Q ss_pred EeecCcCeEEEEecCCCce-eeeecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEeecCCcEEEEEccCCCCc
Q 021291 166 VAGEQLSEVEIWDLNTAER-CTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIP 244 (314)
Q Consensus 166 ~~g~~d~~i~vwd~~~~~~-~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~ 244 (314)
+++.|+.+++||.+.... ...+. +| ...+.++. |.|+ +. .+++++.|+.+.+||... ...
T Consensus 258 -~~~~d~~~~~~~~~~~~~~~~~~~--------~~----~~~v~~~~-~~~~---~~-~~~~~~~d~~~~~~~~~~-~~~ 318 (466)
T COG2319 258 -SGSSDGTIRLWDLRSSSSLLRTLS--------GH----SSSVLSVA-FSPD---GK-LLASGSSDGTVRLWDLET-GKL 318 (466)
T ss_pred -EecCCCcEEEeeecCCCcEEEEEe--------cC----CccEEEEE-ECCC---CC-EEEEeeCCCcEEEEEcCC-Cce
Confidence 677799999999987665 33332 45 44666666 9995 44 566688888899999887 554
Q ss_pred eEeee--cCCcceEEEEEeCCCCeEEEe-cCCCcEEEEecCCCe
Q 021291 245 LTAMK--VHLEPVLCLSIDESCNGGISG-GADQKIVLYNLDHST 285 (314)
Q Consensus 245 ~~~~~--~h~~~v~~~~~~~~~~~l~s~-s~dg~i~iw~~~~~~ 285 (314)
..... .|...+..+.|.+++..++.+ ..|+.+.+|++....
T Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~ 362 (466)
T COG2319 319 LSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGK 362 (466)
T ss_pred EEEeeecccCCceEEEEECCCCCEEEEeecCCCcEEeeecCCCc
Confidence 44444 788889999993332455555 688999999998887
No 195
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.69 E-value=1.1e-15 Score=119.52 Aligned_cols=180 Identities=18% Similarity=0.205 Sum_probs=133.3
Q ss_pred CCCceeEEEEccCCC-EEEEecCCCeEEEEeCCCC---------eEEEEEeccCCcccEEEEEEcccCCCCeEEEeecCC
Q 021291 17 HRASVTDVCFHQTKP-ILFAGTTGGELRIWDTVQH---------RTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDG 86 (314)
Q Consensus 17 h~~~v~~~~~~~~~~-~l~s~~~dg~v~iwd~~~~---------~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg 86 (314)
...+|..+.|.++.. .||||+.|..|+||.++.+ +.+..+..|..+ |.++.|+| +|+.|++|+.+|
T Consensus 12 ~~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~a--VN~vRf~p--~gelLASg~D~g 87 (434)
T KOG1009|consen 12 DHEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRA--VNVVRFSP--DGELLASGGDGG 87 (434)
T ss_pred CCCceEEEEeccCcccceecccCccceeeeeeeecCCCCCceeEEEeecccCCcce--eEEEEEcC--CcCeeeecCCCc
Confidence 346899999998654 9999999999999988653 234556677755 99999999 999999999999
Q ss_pred eEEEEeCCCCCCCCCCeeeeecceeeEEEeeeeeccccccccCCCCcceeeccCCceeeecCCCCCCceeccCCCceEEE
Q 021291 87 TVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAV 166 (314)
Q Consensus 87 ~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (314)
.|.+|-...-.. . +. +.-
T Consensus 88 ~v~lWk~~~~~~-----~-----------------------------------------------------~~-d~e--- 105 (434)
T KOG1009|consen 88 EVFLWKQGDVRI-----F-----------------------------------------------------DA-DTE--- 105 (434)
T ss_pred eEEEEEecCcCC-----c-----------------------------------------------------cc-cch---
Confidence 999998765110 0 00 000
Q ss_pred eecCcCeEEEEecCCCceeeeecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEeecCCcEEEEEccCCCCceE
Q 021291 167 AGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLT 246 (314)
Q Consensus 167 ~g~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~~ 246 (314)
...+. +.......+. +|. .-++.++ |+|+ +. ++++++.|..+++||+.. ++.+.
T Consensus 106 -~~~~k-------e~w~v~k~lr--------~h~----~diydL~-Ws~d---~~-~l~s~s~dns~~l~Dv~~-G~l~~ 159 (434)
T KOG1009|consen 106 -ADLNK-------EKWVVKKVLR--------GHR----DDIYDLA-WSPD---SN-FLVSGSVDNSVRLWDVHA-GQLLA 159 (434)
T ss_pred -hhhCc-------cceEEEEEec--------ccc----cchhhhh-ccCC---Cc-eeeeeeccceEEEEEecc-ceeEe
Confidence 00000 0011111222 342 2455665 9998 44 999999999999999998 99999
Q ss_pred eeecCCcceEEEEEeCCCCeEEEecCCCcEEEEecCCCeeeE
Q 021291 247 AMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTYVL 288 (314)
Q Consensus 247 ~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~iw~~~~~~~~~ 288 (314)
.+..|...|..++|+|-.+++++-|.|...+.+.+...+.+.
T Consensus 160 ~~~dh~~yvqgvawDpl~qyv~s~s~dr~~~~~~~~~~~~~~ 201 (434)
T KOG1009|consen 160 ILDDHEHYVQGVAWDPLNQYVASKSSDRHPEGFSAKLKQVIK 201 (434)
T ss_pred eccccccccceeecchhhhhhhhhccCcccceeeeeeeeeee
Confidence 999999999999999999999999999988887776554443
No 196
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.68 E-value=1.5e-16 Score=126.26 Aligned_cols=199 Identities=16% Similarity=0.188 Sum_probs=153.0
Q ss_pred eeEEEEccCCCEEEEecCCCeEEEEeCCCCeEEEEEeccCCcccEEEEEEcccCCCCeEEEeecCCeEEEEeCCCCCCCC
Q 021291 21 VTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGGLSS 100 (314)
Q Consensus 21 v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~ 100 (314)
-..+.|+.+|++|+.|+.-|-|..+|..+++....+... ..|.++.|.. +.++|+. .....+.|||-..-++
T Consensus 132 PY~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~~Ei~v~---Etv~Dv~~LH--neq~~AV-AQK~y~yvYD~~GtEl-- 203 (545)
T KOG1272|consen 132 PYHLDYTRNGRHLLLGGRKGHLAAFDWVTKKLHFEINVM---ETVRDVTFLH--NEQFFAV-AQKKYVYVYDNNGTEL-- 203 (545)
T ss_pred CeeeeecCCccEEEecCCccceeeeecccceeeeeeehh---hhhhhhhhhc--chHHHHh-hhhceEEEecCCCcEE--
Confidence 456888999999999999999999999999988887655 4499999998 6455555 4567899999765432
Q ss_pred CCeeeeecceeeEEEeeeeeccccccccCCCCcceeeccCCceeeecCCCCCCceeccCCCceEEEeecCcCeEEEEecC
Q 021291 101 NPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQLSEVEIWDLN 180 (314)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~vwd~~ 180 (314)
..++..... .. +.|.|.. + |+++++..|.++.-|+.
T Consensus 204 ---HClk~~~~v---~r------------------------------------LeFLPyH-f-LL~~~~~~G~L~Y~DVS 239 (545)
T KOG1272|consen 204 ---HCLKRHIRV---AR------------------------------------LEFLPYH-F-LLVAASEAGFLKYQDVS 239 (545)
T ss_pred ---eehhhcCch---hh------------------------------------hcccchh-h-eeeecccCCceEEEeec
Confidence 111111110 00 3455653 4 44467778999999999
Q ss_pred CCceeeeecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEeecCCcEEEEEccCCCCceEeeecCCcceEEEEE
Q 021291 181 TAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPVLCLSI 260 (314)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~~~~ 260 (314)
+|+.+..+.. ..+....+. -+|-+. .+-.|..+|+|.+|.... ..++..+..|.++|.+|++
T Consensus 240 ~GklVa~~~t------------~~G~~~vm~-qNP~Na----Vih~GhsnGtVSlWSP~s-kePLvKiLcH~g~V~siAv 301 (545)
T KOG1272|consen 240 TGKLVASIRT------------GAGRTDVMK-QNPYNA----VIHLGHSNGTVSLWSPNS-KEPLVKILCHRGPVSSIAV 301 (545)
T ss_pred hhhhhHHHHc------------cCCccchhh-cCCccc----eEEEcCCCceEEecCCCC-cchHHHHHhcCCCcceEEE
Confidence 9999888763 133344444 667532 889999999999999998 8888888899999999999
Q ss_pred eCCCCeEEEecCCCcEEEEecCCCeeeEe
Q 021291 261 DESCNGGISGGADQKIVLYNLDHSTYVLF 289 (314)
Q Consensus 261 ~~~~~~l~s~s~dg~i~iw~~~~~~~~~~ 289 (314)
+++|+|++|.+.|..++|||++.-.++..
T Consensus 302 ~~~G~YMaTtG~Dr~~kIWDlR~~~ql~t 330 (545)
T KOG1272|consen 302 DRGGRYMATTGLDRKVKIWDLRNFYQLHT 330 (545)
T ss_pred CCCCcEEeecccccceeEeeeccccccce
Confidence 99999999999999999999998776543
No 197
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.68 E-value=2.8e-15 Score=121.33 Aligned_cols=224 Identities=17% Similarity=0.191 Sum_probs=144.7
Q ss_pred CCCEEEEecCCCeEEEEeCCCCeEEEEE--eccCCcccEEEEEEcccCCCCeEEEeecCCeEEEEeCCCCCCCCCCeeee
Q 021291 29 TKPILFAGTTGGELRIWDTVQHRTVSSS--WVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGGLSSNPSLTI 106 (314)
Q Consensus 29 ~~~~l~s~~~dg~v~iwd~~~~~~~~~~--~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~ 106 (314)
++--|+.|-.-|.|.+.|....+..+.+ ..+.....|+|+.|-|. +...|+.+-.+|.+.+||.+-..-...|.+..
T Consensus 184 ~g~dllIGf~tGqvq~idp~~~~~sklfne~r~i~ktsvT~ikWvpg-~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~~ 262 (636)
T KOG2394|consen 184 KGLDLLIGFTTGQVQLIDPINFEVSKLFNEERLINKSSVTCIKWVPG-SDSLFLVAHASGNLYLYDKEIVCGATAPSYQA 262 (636)
T ss_pred CCcceEEeeccCceEEecchhhHHHHhhhhcccccccceEEEEEEeC-CCceEEEEEecCceEEeeccccccCCCCcccc
Confidence 4556777777888888886552211111 11222256999999995 33677778889999999874322112222222
Q ss_pred ecceeeEEEeeeeeccccccccCCCCcceeeccCCceeeecCCCCCCceeccCCCceEEEeecCcCeEEEEecCCCceee
Q 021291 107 KTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCT 186 (314)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~vwd~~~~~~~~ 186 (314)
............... ....-...|.+... .-...+|+|||+++. +-+.||.++|||..+.+++.
T Consensus 263 ~k~~~~f~i~t~ksk------~~rNPv~~w~~~~g--------~in~f~FS~DG~~LA--~VSqDGfLRvF~fdt~eLlg 326 (636)
T KOG2394|consen 263 LKDGDQFAILTSKSK------KTRNPVARWHIGEG--------SINEFAFSPDGKYLA--TVSQDGFLRIFDFDTQELLG 326 (636)
T ss_pred cCCCCeeEEeeeecc------ccCCccceeEeccc--------cccceeEcCCCceEE--EEecCceEEEeeccHHHHHH
Confidence 221111111100000 00001111111111 111178999998765 44569999999999988877
Q ss_pred eecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEeecCCcEEEEEccCCCCceEeeecCCcceEEEEEeC----
Q 021291 187 RLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDE---- 262 (314)
Q Consensus 187 ~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~---- 262 (314)
.++. .-+...|++ |+|| |+ +|++|++|..|.||.+.. .+.+..-++|.++|..|+|+|
T Consensus 327 ~mkS------------YFGGLLCvc-WSPD---GK-yIvtGGEDDLVtVwSf~e-rRVVARGqGHkSWVs~VaFDpytt~ 388 (636)
T KOG2394|consen 327 VMKS------------YFGGLLCVC-WSPD---GK-YIVTGGEDDLVTVWSFEE-RRVVARGQGHKSWVSVVAFDPYTTS 388 (636)
T ss_pred HHHh------------hccceEEEE-EcCC---cc-EEEecCCcceEEEEEecc-ceEEEeccccccceeeEeecccccc
Confidence 6662 345678887 9999 66 999999999999999998 889999999999999999982
Q ss_pred --------------------------------------------CCCeEEEecCCCcEEEEecCCCeee
Q 021291 263 --------------------------------------------SCNGGISGGADQKIVLYNLDHSTYV 287 (314)
Q Consensus 263 --------------------------------------------~~~~l~s~s~dg~i~iw~~~~~~~~ 287 (314)
....|.+.+.|-.+.+||+......
T Consensus 389 ~ee~~~~~~~~~~~~~~~~~~~~r~~~~~S~~~~~~s~~~~~~~v~YRfGSVGqDTqlcLWDlteD~L~ 457 (636)
T KOG2394|consen 389 TEEWNNFSGMDSTFSDVAHDFEIRANGTGSAEGCPLSSFNRINSVTYRFGSVGQDTQLCLWDLTEDVLV 457 (636)
T ss_pred cccccccccccccccchhcccccccCCCCCcCCCcccccccccceEEEeecccccceEEEEecchhhcc
Confidence 1124778889999999999865443
No 198
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.66 E-value=1.3e-13 Score=113.28 Aligned_cols=276 Identities=13% Similarity=0.103 Sum_probs=156.2
Q ss_pred CCceEEecCCCCceeEEEEccCCCEEEEecCCCeEEEEeCCCCeEEEEEeccCCcccEEEEEEcccCCCCeEEEee-cCC
Q 021291 8 PDPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQG-RDG 86 (314)
Q Consensus 8 ~~~~~~l~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~-~dg 86 (314)
.+.+.++......-..+.|+|||+++++++.||.|.++|+.+++.+.+++... ...++++++ ||++++++. .++
T Consensus 26 ~~~~~~i~~~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~G~---~~~~i~~s~--DG~~~~v~n~~~~ 100 (369)
T PF02239_consen 26 NKVVARIPTGGAPHAGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATIKVGG---NPRGIAVSP--DGKYVYVANYEPG 100 (369)
T ss_dssp -SEEEEEE-STTEEEEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE-SS---EEEEEEE----TTTEEEEEEEETT
T ss_pred CeEEEEEcCCCCceeEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEEecCC---CcceEEEcC--CCCEEEEEecCCC
Confidence 46677777554444457899999999999999999999999999999987654 357899999 999988765 589
Q ss_pred eEEEEeCCCCCCCCCCeeeeeccee-------eEEEe-eeeecc-ccccccCCCCcceeeccCCceeee-cCCCCCC---
Q 021291 87 TVKCWDIENGGLSSNPSLTIKTNSY-------HFCKL-SLVKEP-YANAKQANEPKDCYEREVGETVDT-DSLCDSK--- 153 (314)
Q Consensus 87 ~v~iwd~~~~~~~~~~~~~~~~~~~-------~~~~~-~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~--- 153 (314)
.+.++|.++.+.++ .+..... ....+ .....+ ..............+......+.. .......
T Consensus 101 ~v~v~D~~tle~v~----~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~~~~~~i~~g~~~~D 176 (369)
T PF02239_consen 101 TVSVIDAETLEPVK----TIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKNLKVTTIKVGRFPHD 176 (369)
T ss_dssp EEEEEETTT--EEE----EEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSCEEEEEEE--TTEEE
T ss_pred ceeEecccccccee----ecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEeccccccceeeecccccccc
Confidence 99999999986544 3322211 11111 111122 112222233333344443332221 1111111
Q ss_pred ceeccCCCceEEEeecCcCeEEEEecCCCceeeeecccccC----------------CCCC-----------------cC
Q 021291 154 DDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCG----------------GSPN-----------------FS 200 (314)
Q Consensus 154 ~~~~~~~~~~~~~~g~~d~~i~vwd~~~~~~~~~~~~~~~~----------------~~~~-----------------h~ 200 (314)
..|+|++++++++ ...++.|.++|.++++....+...... .... |.
T Consensus 177 ~~~dpdgry~~va-~~~sn~i~viD~~~~k~v~~i~~g~~p~~~~~~~~php~~g~vw~~~~~~~~~~~~ig~~~v~v~d 255 (369)
T PF02239_consen 177 GGFDPDGRYFLVA-ANGSNKIAVIDTKTGKLVALIDTGKKPHPGPGANFPHPGFGPVWATSGLGYFAIPLIGTDPVSVHD 255 (369)
T ss_dssp EEE-TTSSEEEEE-EGGGTEEEEEETTTTEEEEEEE-SSSBEETTEEEEEETTTEEEEEEEBSSSSEEEEEE--TTT-ST
T ss_pred cccCcccceeeec-ccccceeEEEeeccceEEEEeeccccccccccccccCCCcceEEeeccccceecccccCCccccch
Confidence 8899999988764 334578999999887765543210000 0000 10
Q ss_pred CCC---------CceeeeEEEecCCCCCCceEEEEe----ecCCcEEEEEccCCCCceEeeecC-CcceEEEEEeCCCCe
Q 021291 201 SKG---------RGMCMAVQAYLPSKSQGFVNVLAG----YEDGSILVWDIRNPGIPLTAMKVH-LEPVLCLSIDESCNG 266 (314)
Q Consensus 201 ~~~---------~~~~~~~~~~~p~~~~g~~~l~~g----~~dg~i~vwd~~~~~~~~~~~~~h-~~~v~~~~~~~~~~~ 266 (314)
... .+...-+. -+|+ ++ ++.+. ..++.|.++|.++ .+.+..+... ...+..+.|+++|+.
T Consensus 256 ~~~wkvv~~I~~~G~glFi~-thP~---s~-~vwvd~~~~~~~~~v~viD~~t-l~~~~~i~~~~~~~~~h~ef~~dG~~ 329 (369)
T PF02239_consen 256 DYAWKVVKTIPTQGGGLFIK-THPD---SR-YVWVDTFLNPDADTVQVIDKKT-LKVVKTITPGPGKRVVHMEFNPDGKE 329 (369)
T ss_dssp TTBTSEEEEEE-SSSS--EE---TT----S-EEEEE-TT-SSHT-EEEEECCG-TEEEE-HHHHHT--EEEEEE-TTSSE
T ss_pred hhcCeEEEEEECCCCcceee-cCCC---Cc-cEEeeccCCCCCceEEEEECcC-cceeEEEeccCCCcEeccEECCCCCE
Confidence 000 01112333 5666 44 66665 5568999999998 5555665432 235899999999997
Q ss_pred EEEecCC--CcEEEEecCCCeeeEeeeeeeecCCCce
Q 021291 267 GISGGAD--QKIVLYNLDHSTYVLFGIGFVCDQEGNK 301 (314)
Q Consensus 267 l~s~s~d--g~i~iw~~~~~~~~~~~~~~~~~~~~~~ 301 (314)
+..+..+ +.|.+||..+.+.+..+. ...|.|..
T Consensus 330 v~vS~~~~~~~i~v~D~~Tl~~~~~i~--~~tP~G~f 364 (369)
T PF02239_consen 330 VWVSVWDGNGAIVVYDAKTLKEKKRIP--VPTPTGKF 364 (369)
T ss_dssp EEEEEE--TTEEEEEETTTTEEEEEEE----SEEEEE
T ss_pred EEEEEecCCCEEEEEECCCcEEEEEEE--eeCCCeEe
Confidence 7544443 379999999999998877 44465543
No 199
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.66 E-value=3.7e-14 Score=106.20 Aligned_cols=112 Identities=11% Similarity=0.241 Sum_probs=85.9
Q ss_pred ceeccCCCceEEEeecCcCeEEEEecCCCceeeeecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEeec---C
Q 021291 154 DDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYE---D 230 (314)
Q Consensus 154 ~~~~~~~~~~~~~~g~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~---d 230 (314)
++|+|+|+.++++.|..++.|.+||++ ++.+..+. ......+. |+|+ |+ ++++++. .
T Consensus 65 ~~WsP~g~~favi~g~~~~~v~lyd~~-~~~i~~~~--------------~~~~n~i~-wsP~---G~-~l~~~g~~n~~ 124 (194)
T PF08662_consen 65 VAWSPNGNEFAVIYGSMPAKVTLYDVK-GKKIFSFG--------------TQPRNTIS-WSPD---GR-FLVLAGFGNLN 124 (194)
T ss_pred EEECcCCCEEEEEEccCCcccEEEcCc-ccEeEeec--------------CCCceEEE-ECCC---CC-EEEEEEccCCC
Confidence 679999999888788778899999997 66666665 22445676 9998 66 6666543 4
Q ss_pred CcEEEEEccCCCCceEeeecCCcceEEEEEeCCCCeEEEecC------CCcEEEEecCCCeeeEe
Q 021291 231 GSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGA------DQKIVLYNLDHSTYVLF 289 (314)
Q Consensus 231 g~i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~------dg~i~iw~~~~~~~~~~ 289 (314)
|.|.+||.++ .+.+.... | ..++.++|+|+|++|+++.. |+.++||++. |+.+..
T Consensus 125 G~l~~wd~~~-~~~i~~~~-~-~~~t~~~WsPdGr~~~ta~t~~r~~~dng~~Iw~~~-G~~l~~ 185 (194)
T PF08662_consen 125 GDLEFWDVRK-KKKISTFE-H-SDATDVEWSPDGRYLATATTSPRLRVDNGFKIWSFQ-GRLLYK 185 (194)
T ss_pred cEEEEEECCC-CEEeeccc-c-CcEEEEEEcCCCCEEEEEEeccceeccccEEEEEec-CeEeEe
Confidence 6799999997 66666654 3 35789999999999998874 7889999985 555543
No 200
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.65 E-value=1.9e-13 Score=112.24 Aligned_cols=252 Identities=10% Similarity=0.096 Sum_probs=142.8
Q ss_pred EEEecCCCeEEEEeCCC-Ce--EEEEEeccCCcccEEEEEEcccCCCCeEEEee-cCCeEEEEeCCC-CCCCCCCeeeee
Q 021291 33 LFAGTTGGELRIWDTVQ-HR--TVSSSWVHSAAHGIVSVATGPSIGLNKVISQG-RDGTVKCWDIEN-GGLSSNPSLTIK 107 (314)
Q Consensus 33 l~s~~~dg~v~iwd~~~-~~--~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~-~dg~v~iwd~~~-~~~~~~~~~~~~ 107 (314)
+++...|+.|.+||+.+ ++ .+..+... .....++++| ++++|++++ .++.|.+|++.. +.+.. .....
T Consensus 5 y~~~~~~~~I~~~~~~~~g~l~~~~~~~~~---~~~~~l~~sp--d~~~lyv~~~~~~~i~~~~~~~~g~l~~--~~~~~ 77 (330)
T PRK11028 5 YIASPESQQIHVWNLNHEGALTLLQVVDVP---GQVQPMVISP--DKRHLYVGVRPEFRVLSYRIADDGALTF--AAESP 77 (330)
T ss_pred EEEcCCCCCEEEEEECCCCceeeeeEEecC---CCCccEEECC--CCCEEEEEECCCCcEEEEEECCCCceEE--eeeec
Confidence 34447789999999964 33 44555432 3367899999 989887664 578999999973 32211 11111
Q ss_pred c-ceeeEEEeeeeeccccccccCCCCcceeeccCCce---eeecCCCCC--C-ceeccCCCceEEEeecCcCeEEEEecC
Q 021291 108 T-NSYHFCKLSLVKEPYANAKQANEPKDCYEREVGET---VDTDSLCDS--K-DDVPAEGPKYMAVAGEQLSEVEIWDLN 180 (314)
Q Consensus 108 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~--~-~~~~~~~~~~~~~~g~~d~~i~vwd~~ 180 (314)
. .......+++............+...++++..... ......+.. . ++++|+++.+++ +...++.|.+||+.
T Consensus 78 ~~~~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~p~g~~l~v-~~~~~~~v~v~d~~ 156 (330)
T PRK11028 78 LPGSPTHISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIEGLEGCHSANIDPDNRTLWV-PCLKEDRIRLFTLS 156 (330)
T ss_pred CCCCceEEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeeccCCCcccEeEeCCCCCEEEE-eeCCCCEEEEEEEC
Confidence 1 11223333433333333333345556666653221 111122211 2 789999987765 55667999999997
Q ss_pred CCceeeeecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEeec-CCcEEEEEccCC-C--CceEeeecC-----
Q 021291 181 TAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYE-DGSILVWDIRNP-G--IPLTAMKVH----- 251 (314)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~-dg~i~vwd~~~~-~--~~~~~~~~h----- 251 (314)
+...+...... ....+.......+. |+|+ |+ +++++.. ++.|.+||++.. + +.+..+..+
T Consensus 157 ~~g~l~~~~~~------~~~~~~g~~p~~~~-~~pd---g~-~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~ 225 (330)
T PRK11028 157 DDGHLVAQEPA------EVTTVEGAGPRHMV-FHPN---QQ-YAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFS 225 (330)
T ss_pred CCCcccccCCC------ceecCCCCCCceEE-ECCC---CC-EEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCC
Confidence 63322110000 00000111234555 9998 65 6655554 899999999741 2 223333322
Q ss_pred -CcceEEEEEeCCCCeEEEec-CCCcEEEEecCCCeeeE----e------eeeeeecCCCceec
Q 021291 252 -LEPVLCLSIDESCNGGISGG-ADQKIVLYNLDHSTYVL----F------GIGFVCDQEGNKFG 303 (314)
Q Consensus 252 -~~~v~~~~~~~~~~~l~s~s-~dg~i~iw~~~~~~~~~----~------~~~~~~~~~~~~~~ 303 (314)
......+.++|++++|+++. .++.|.+|+++...... . ..++.++++|+.+.
T Consensus 226 ~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~~~~~~~~~~~~~~~~~p~~~~~~~dg~~l~ 289 (330)
T PRK11028 226 DTRWAADIHITPDGRHLYACDRTASLISVFSVSEDGSVLSFEGHQPTETQPRGFNIDHSGKYLI 289 (330)
T ss_pred CCccceeEEECCCCCEEEEecCCCCeEEEEEEeCCCCeEEEeEEEeccccCCceEECCCCCEEE
Confidence 11234688999999988875 47899999996543211 1 13566777776554
No 201
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.65 E-value=4.5e-15 Score=118.73 Aligned_cols=268 Identities=16% Similarity=0.172 Sum_probs=159.5
Q ss_pred ceEEecCCCCceeEEEEccCCCEEEEecCCCeEEEEeCCCCeEEEEEe-ccC----------------------------
Q 021291 10 PVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSW-VHS---------------------------- 60 (314)
Q Consensus 10 ~~~~l~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~-~~~---------------------------- 60 (314)
....|.+|.+.|..+.|+..|..|++|+.|..|.+||...++....+. +|.
T Consensus 134 l~~kL~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr~ 213 (559)
T KOG1334|consen 134 LQKKLNKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQVRV 213 (559)
T ss_pred hhhcccCCCCccceeeecccCceeeccCccceEEeehhhccCcccccccccccchhhhhccCCCCCcCceeccccCceee
Confidence 456788999999999999999999999999999999987655433332 121
Q ss_pred -----------------CcccEEEEEEcccCCCCeEEEeecCCeEEEEeCCCCCCCCCCeeeeecceeeEEEeeeeeccc
Q 021291 61 -----------------AAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPY 123 (314)
Q Consensus 61 -----------------~~~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 123 (314)
+.++|.-++.-|. ....|.+++.|+.+.-.|++...........-.........+++...+.
T Consensus 214 s~i~~t~~~e~t~rl~~h~g~vhklav~p~-sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia~~P~ 292 (559)
T KOG1334|consen 214 SEILETGYVENTKRLAPHEGPVHKLAVEPD-SPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERVGLYTIAVDPR 292 (559)
T ss_pred eeeccccceecceecccccCccceeeecCC-CCCcccccccccceeeeeeccCCccceeeeeccCCccceeeeeEecCCC
Confidence 1123555555552 2245667777777777777655332211100001110111122222222
Q ss_pred cc-cccCCCCc---ceeeccCCc------eeeecCCCCCC---------ceeccCCCceEEEeecCcCeEEEEecCCCce
Q 021291 124 AN-AKQANEPK---DCYEREVGE------TVDTDSLCDSK---------DDVPAEGPKYMAVAGEQLSEVEIWDLNTAER 184 (314)
Q Consensus 124 ~~-~~~~~~~~---~~~~~~~~~------~~~~~~~~~~~---------~~~~~~~~~~~~~~g~~d~~i~vwd~~~~~~ 184 (314)
.. ..+.++.. .+++.+... .+....+.|.. ++++.++..+++ +..|-.|+++....+.-
T Consensus 293 nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLa--SYnDe~IYLF~~~~~~G 370 (559)
T KOG1334|consen 293 NTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLA--SYNDEDIYLFNKSMGDG 370 (559)
T ss_pred CccccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceee--eecccceEEeccccccC
Confidence 21 22233322 233332211 11111121111 888888887775 44467899995432221
Q ss_pred --eeeec---ccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEeecCCcEEEEEccCCCCceEeeecCCcceEEEE
Q 021291 185 --CTRLH---QNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPVLCLS 259 (314)
Q Consensus 185 --~~~~~---~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~~~ 259 (314)
..... .-......||....+ +-.+.-|-|. .+ ++++|+.-|.|.||+-.+ ++.+..+.+-..-|+||.
T Consensus 371 ~~p~~~s~~~~~~k~vYKGHrN~~T--VKgVNFfGPr---sE-yVvSGSDCGhIFiW~K~t-~eii~~MegDr~VVNCLE 443 (559)
T KOG1334|consen 371 SEPDPSSPREQYVKRVYKGHRNSRT--VKGVNFFGPR---SE-YVVSGSDCGHIFIWDKKT-GEIIRFMEGDRHVVNCLE 443 (559)
T ss_pred CCCCCCcchhhccchhhcccccccc--cceeeeccCc---cc-eEEecCccceEEEEecch-hHHHHHhhcccceEeccC
Confidence 00000 000001227765433 4455436665 33 999999999999999988 888888888777999999
Q ss_pred EeCCCCeEEEecCCCcEEEEecCCCeee
Q 021291 260 IDESCNGGISGGADQKIVLYNLDHSTYV 287 (314)
Q Consensus 260 ~~~~~~~l~s~s~dg~i~iw~~~~~~~~ 287 (314)
-+|--..||+++-|.-|+||-..+.+..
T Consensus 444 pHP~~PvLAsSGid~DVKIWTP~~~er~ 471 (559)
T KOG1334|consen 444 PHPHLPVLASSGIDHDVKIWTPLTAERA 471 (559)
T ss_pred CCCCCchhhccCCccceeeecCCccccc
Confidence 9999999999999999999988555443
No 202
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.65 E-value=6.7e-15 Score=119.24 Aligned_cols=182 Identities=17% Similarity=0.258 Sum_probs=139.1
Q ss_pred CEEEEecCCCeEEEEeCCCCeEEEEEeccCCcccEEEEEEcccCCCCeEEEeecCCeEEEEeCCCCCCCCCCeeeeecce
Q 021291 31 PILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGGLSSNPSLTIKTNS 110 (314)
Q Consensus 31 ~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~ 110 (314)
..|+.++.||.+.|.+ +.++....+..|.++ |.+-.|+| +|.-|+++++||.|++|.-... +.. .+. +...
T Consensus 76 d~~~i~s~DGkf~il~-k~~rVE~sv~AH~~A--~~~gRW~~--dGtgLlt~GEDG~iKiWSrsGM-LRS--tl~-Q~~~ 146 (737)
T KOG1524|consen 76 DTLLICSNDGRFVILN-KSARVERSISAHAAA--ISSGRWSP--DGAGLLTAGEDGVIKIWSRSGM-LRS--TVV-QNEE 146 (737)
T ss_pred ceEEEEcCCceEEEec-ccchhhhhhhhhhhh--hhhcccCC--CCceeeeecCCceEEEEeccch-HHH--HHh-hcCc
Confidence 4688899999999998 667888888889855 99999999 9999999999999999985432 211 111 1111
Q ss_pred eeEEEeeeeeccccccccCCCCcceeeccCCceeeecCCCCCCceeccCCCceEEEeecCcCeEEEEecCCCceeeeecc
Q 021291 111 YHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQ 190 (314)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~vwd~~~~~~~~~~~~ 190 (314)
...| ++|.|+.+.++.+.| +.+.+=.+.....+...+
T Consensus 147 ~v~c---------------------------------------~~W~p~S~~vl~c~g---~h~~IKpL~~n~k~i~Wk- 183 (737)
T KOG1524|consen 147 SIRC---------------------------------------ARWAPNSNSIVFCQG---GHISIKPLAANSKIIRWR- 183 (737)
T ss_pred eeEE---------------------------------------EEECCCCCceEEecC---CeEEEeecccccceeEEe-
Confidence 1122 568899888876433 568888877777777777
Q ss_pred cccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEeecCCcEEEEEccCCCCceEeeecCCcceEEEEEeCCCCeEEEe
Q 021291 191 NSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISG 270 (314)
Q Consensus 191 ~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~ 270 (314)
+| .+.+.++. |+|... ++++|++|-..+|||.. ++++..-..|.-+|++++|.|+ ..++.+
T Consensus 184 -------AH----DGiiL~~~-W~~~s~----lI~sgGED~kfKvWD~~--G~~Lf~S~~~ey~ITSva~npd-~~~~v~ 244 (737)
T KOG1524|consen 184 -------AH----DGLVLSLS-WSTQSN----IIASGGEDFRFKIWDAQ--GANLFTSAAEEYAITSVAFNPE-KDYLLW 244 (737)
T ss_pred -------cc----CcEEEEee-cCcccc----ceeecCCceeEEeeccc--CcccccCChhccceeeeeeccc-cceeee
Confidence 67 67999998 999733 99999999999999987 7888888899999999999999 556666
Q ss_pred cCCCcEEEEecCCC
Q 021291 271 GADQKIVLYNLDHS 284 (314)
Q Consensus 271 s~dg~i~iw~~~~~ 284 (314)
|.. ++|+=..+.|
T Consensus 245 S~n-t~R~~~p~~G 257 (737)
T KOG1524|consen 245 SYN-TARFSSPRVG 257 (737)
T ss_pred eee-eeeecCCCcc
Confidence 654 5664444444
No 203
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.63 E-value=7.3e-14 Score=108.96 Aligned_cols=247 Identities=13% Similarity=0.152 Sum_probs=161.9
Q ss_pred CCCceeEEEEccCC--CEEEEecCCCeEEEEeCCCCeEEEEE----eccCCcccEEEEEEcccCCCCeEEEeecCCeEEE
Q 021291 17 HRASVTDVCFHQTK--PILFAGTTGGELRIWDTVQHRTVSSS----WVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKC 90 (314)
Q Consensus 17 h~~~v~~~~~~~~~--~~l~s~~~dg~v~iwd~~~~~~~~~~----~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~v~i 90 (314)
-...|..++|.-++ ..|...+.|..+..+.+....+...+ ..+-...+|..++... ..|++|-.+|.+.+
T Consensus 54 ~~~ris~l~~~~d~~tevl~~r~~~~~~~~~~~~E~~~~s~~~~~~~~~l~~~~I~gl~~~d----g~Litc~~sG~l~~ 129 (412)
T KOG3881|consen 54 ELDRISSLLFGVDGETEVLNARSADDDLPKFVIEEFEISSSLDDAKTVSLGTKSIKGLKLAD----GTLITCVSSGNLQV 129 (412)
T ss_pred hhhhhhhheeecCCceeEeeccccCcccccccccCCccccccccccccccccccccchhhcC----CEEEEEecCCcEEE
Confidence 34567888888654 35565657777888887776655443 2233335588887765 68899999999999
Q ss_pred EeCCCCCCCCCCeeeeecceeeEEEeeeeeccccccccCC-----CCcceeeccCCceeeecCCCCCC------------
Q 021291 91 WDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQAN-----EPKDCYEREVGETVDTDSLCDSK------------ 153 (314)
Q Consensus 91 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~------------ 153 (314)
|....+..-..+...+...+.....-.....+. ..+.| ....+|++.....+........+
T Consensus 130 ~~~k~~d~hss~l~~la~g~g~~~~r~~~~~p~--Iva~GGke~~n~lkiwdle~~~qiw~aKNvpnD~L~LrVPvW~td 207 (412)
T KOG3881|consen 130 RHDKSGDLHSSKLIKLATGPGLYDVRQTDTDPY--IVATGGKENINELKIWDLEQSKQIWSAKNVPNDRLGLRVPVWITD 207 (412)
T ss_pred EeccCCccccccceeeecCCceeeeccCCCCCc--eEecCchhcccceeeeecccceeeeeccCCCCccccceeeeeecc
Confidence 999966543334444444433222111111111 12222 23456666555322221111111
Q ss_pred ceeccCC-CceEEEeecCcCeEEEEecCCCc-eeeeecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEeecCC
Q 021291 154 DDVPAEG-PKYMAVAGEQLSEVEIWDLNTAE-RCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDG 231 (314)
Q Consensus 154 ~~~~~~~-~~~~~~~g~~d~~i~vwd~~~~~-~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg 231 (314)
+.|-+.. .+.++ +++.-+.|++||++.++ ++..|.. ....++++. ..|. |. ++++|..-|
T Consensus 208 i~Fl~g~~~~~fa-t~T~~hqvR~YDt~~qRRPV~~fd~------------~E~~is~~~-l~p~---gn-~Iy~gn~~g 269 (412)
T KOG3881|consen 208 IRFLEGSPNYKFA-TITRYHQVRLYDTRHQRRPVAQFDF------------LENPISSTG-LTPS---GN-FIYTGNTKG 269 (412)
T ss_pred ceecCCCCCceEE-EEecceeEEEecCcccCcceeEecc------------ccCcceeee-ecCC---Cc-EEEEecccc
Confidence 5565552 22333 55556999999999765 4555552 234666666 7777 55 899999999
Q ss_pred cEEEEEccCCCCce-EeeecCCcceEEEEEeCCCCeEEEecCCCcEEEEecCCCeeeE
Q 021291 232 SILVWDIRNPGIPL-TAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTYVL 288 (314)
Q Consensus 232 ~i~vwd~~~~~~~~-~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~iw~~~~~~~~~ 288 (314)
.+..||++. +... ..+++..+.|.++..+|.+++|+++|-|..|||+|+++.+.+.
T Consensus 270 ~l~~FD~r~-~kl~g~~~kg~tGsirsih~hp~~~~las~GLDRyvRIhD~ktrkll~ 326 (412)
T KOG3881|consen 270 QLAKFDLRG-GKLLGCGLKGITGSIRSIHCHPTHPVLASCGLDRYVRIHDIKTRKLLH 326 (412)
T ss_pred hhheecccC-ceeeccccCCccCCcceEEEcCCCceEEeeccceeEEEeecccchhhh
Confidence 999999998 5554 4488999999999999999999999999999999999976654
No 204
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.63 E-value=3.6e-13 Score=102.50 Aligned_cols=179 Identities=15% Similarity=0.281 Sum_probs=130.3
Q ss_pred CeEEEEeCCCCeEEEEEeccCCcccEEEEEEcccCCCCeEEEeecCCeEEEEeCCCC-CCCCCCeeeeecceeeEEEeee
Q 021291 40 GELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENG-GLSSNPSLTIKTNSYHFCKLSL 118 (314)
Q Consensus 40 g~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~ 118 (314)
..|.|||=...+++.++.-. .+|.++.+.+ +.++..- ++.|.||...+. +... .+....++...|.+.+
T Consensus 75 NkviIWDD~k~~~i~el~f~---~~I~~V~l~r----~riVvvl-~~~I~VytF~~n~k~l~--~~et~~NPkGlC~~~~ 144 (346)
T KOG2111|consen 75 NKVIIWDDLKERCIIELSFN---SEIKAVKLRR----DRIVVVL-ENKIYVYTFPDNPKLLH--VIETRSNPKGLCSLCP 144 (346)
T ss_pred ceEEEEecccCcEEEEEEec---cceeeEEEcC----CeEEEEe-cCeEEEEEcCCChhhee--eeecccCCCceEeecC
Confidence 47999996667777777654 4599999988 5666655 468999998743 3322 3333333444443332
Q ss_pred eeccccccccCCCCcceeeccCCceeeecCCCCCCceeccCCCceEEEeecCcCeEEEEecCCCce--eeeecccccCCC
Q 021291 119 VKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQLSEVEIWDLNTAER--CTRLHQNSCGGS 196 (314)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~vwd~~~~~~--~~~~~~~~~~~~ 196 (314)
. .+..+++.-|-.-|.|.|-|+...+. ...+.
T Consensus 145 ~---------------------------------------~~k~~LafPg~k~GqvQi~dL~~~~~~~p~~I~------- 178 (346)
T KOG2111|consen 145 T---------------------------------------SNKSLLAFPGFKTGQVQIVDLASTKPNAPSIIN------- 178 (346)
T ss_pred C---------------------------------------CCceEEEcCCCccceEEEEEhhhcCcCCceEEE-------
Confidence 2 12445666677779999999986554 34444
Q ss_pred CCcCCCCCceeeeEEEecCCCCCCceEEEEeecCCc-EEEEEccCCCCceEeeecC--CcceEEEEEeCCCCeEEEecCC
Q 021291 197 PNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGS-ILVWDIRNPGIPLTAMKVH--LEPVLCLSIDESCNGGISGGAD 273 (314)
Q Consensus 197 ~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~-i~vwd~~~~~~~~~~~~~h--~~~v~~~~~~~~~~~l~s~s~d 273 (314)
+| .+.+.+++ .+-+ |. .+|+++..|+ |||||..+ +.+++++.-- ...|.+|+|+|+..+|+.+|..
T Consensus 179 -AH----~s~Iacv~-Ln~~---Gt-~vATaStkGTLIRIFdt~~-g~~l~E~RRG~d~A~iy~iaFSp~~s~LavsSdK 247 (346)
T KOG2111|consen 179 -AH----DSDIACVA-LNLQ---GT-LVATASTKGTLIRIFDTED-GTLLQELRRGVDRADIYCIAFSPNSSWLAVSSDK 247 (346)
T ss_pred -cc----cCceeEEE-EcCC---cc-EEEEeccCcEEEEEEEcCC-CcEeeeeecCCchheEEEEEeCCCccEEEEEcCC
Confidence 67 44667776 7766 55 9999999998 89999999 8888888732 4579999999999999999999
Q ss_pred CcEEEEecCCCe
Q 021291 274 QKIVLYNLDHST 285 (314)
Q Consensus 274 g~i~iw~~~~~~ 285 (314)
|+++|+.++...
T Consensus 248 gTlHiF~l~~~~ 259 (346)
T KOG2111|consen 248 GTLHIFSLRDTE 259 (346)
T ss_pred CeEEEEEeecCC
Confidence 999999987643
No 205
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.63 E-value=1.8e-13 Score=116.88 Aligned_cols=255 Identities=17% Similarity=0.229 Sum_probs=147.9
Q ss_pred CCCCceeEEEEccCCCEEEEecCCCeEEEEeCCC--C--eEEEEEeccCCcccEEEEEEcccCCCCeEEEeecCCeEEEE
Q 021291 16 GHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQ--H--RTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCW 91 (314)
Q Consensus 16 ~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~--~--~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~v~iw 91 (314)
.|.-.++|.+++|+++++|+|..||.|.+|.--. + .....+.-|. +.|.+++|++ +|.+|++|+.+|.+.+|
T Consensus 203 ~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~--~~V~~L~fS~--~G~~LlSGG~E~VLv~W 278 (792)
T KOG1963|consen 203 HHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHH--DEVNSLSFSS--DGAYLLSGGREGVLVLW 278 (792)
T ss_pred hhcccceeEEeccccceEEEeccCCcEEEEeccccccccccceEEEecc--cccceeEEec--CCceEeecccceEEEEE
Confidence 4777799999999999999999999999997332 1 2234454565 4599999999 99999999999999999
Q ss_pred eCCCCCCCCCCeeeeecceeeEEEeeeeeccccccccCCCCcceeeccC---CceeeecCCC-------CCC----ceec
Q 021291 92 DIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREV---GETVDTDSLC-------DSK----DDVP 157 (314)
Q Consensus 92 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~-------~~~----~~~~ 157 (314)
.+++++.. .+.--..+...+.++++......... +....++.... ...+...... .+. ++++
T Consensus 279 q~~T~~kq---fLPRLgs~I~~i~vS~ds~~~sl~~~-DNqI~li~~~dl~~k~tIsgi~~~~~~~k~~~~~l~t~~~id 354 (792)
T KOG1963|consen 279 QLETGKKQ---FLPRLGSPILHIVVSPDSDLYSLVLE-DNQIHLIKASDLEIKSTISGIKPPTPSTKTRPQSLTTGVSID 354 (792)
T ss_pred eecCCCcc---cccccCCeeEEEEEcCCCCeEEEEec-CceEEEEeccchhhhhhccCccCCCccccccccccceeEEEc
Confidence 99998721 22222334444444433322222222 22222221111 1111111111 111 6666
Q ss_pred cCCCceEEEeecCcCeEEEEecCCCceeeeecccccCCC-------------------------------CCc-------
Q 021291 158 AEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGS-------------------------------PNF------- 199 (314)
Q Consensus 158 ~~~~~~~~~~g~~d~~i~vwd~~~~~~~~~~~~~~~~~~-------------------------------~~h------- 199 (314)
|--+.++ ..| ..+.|.+||+.+.+.+..+.....-.. ..+
T Consensus 355 pr~~~~v-ln~-~~g~vQ~ydl~td~~i~~~~v~~~n~~~~~~n~~v~itav~~~~~gs~maT~E~~~d~~~~~~~e~~L 432 (792)
T KOG1963|consen 355 PRTNSLV-LNG-HPGHVQFYDLYTDSTIYKLQVCDENYSDGDVNIQVGITAVARSRFGSWMATLEARIDKFNFFDGEVSL 432 (792)
T ss_pred CCCCcee-ecC-CCceEEEEeccccceeeeEEEEeecccCCcceeEEeeeeehhhccceEEEEeeeeehhhhccCceEEE
Confidence 6322222 233 357788887765544333321000000 000
Q ss_pred ------------------CCCCCceeeeEEEecCCCCCCceEEEEeecCCcEEEEEccCC---------CCceEeeecCC
Q 021291 200 ------------------SSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNP---------GIPLTAMKVHL 252 (314)
Q Consensus 200 ------------------~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~---------~~~~~~~~~h~ 252 (314)
..++.....+.+..+|..+ . .+++++.||.+++|-+... ..+...-.-|.
T Consensus 433 KFW~~n~~~kt~~L~T~I~~PH~~~~vat~~~~~~rs-~--~~vta~~dg~~KiW~~~~~~n~~k~~s~W~c~~i~sy~k 509 (792)
T KOG1963|consen 433 KFWQYNPNSKTFILNTKINNPHGNAFVATIFLNPTRS-V--RCVTASVDGDFKIWVFTDDSNIYKKSSNWTCKAIGSYHK 509 (792)
T ss_pred EEEEEcCCcceeEEEEEEecCCCceeEEEEEecCccc-c--eeEEeccCCeEEEEEEecccccCcCccceEEeeeecccc
Confidence 0111112222221233222 1 6889999999999988321 11222223478
Q ss_pred cceEEEEEeCCCCeEEEecCCCcEEEEecCCC
Q 021291 253 EPVLCLSIDESCNGGISGGADQKIVLYNLDHS 284 (314)
Q Consensus 253 ~~v~~~~~~~~~~~l~s~s~dg~i~iw~~~~~ 284 (314)
.+++.++|+.||. +++.|.|++|.+||..+.
T Consensus 510 ~~i~a~~fs~dGs-lla~s~~~~Itiwd~~~~ 540 (792)
T KOG1963|consen 510 TPITALCFSQDGS-LLAVSFDDTITIWDYDTK 540 (792)
T ss_pred CcccchhhcCCCc-EEEEecCCEEEEecCCCh
Confidence 8999999999996 566778999999999984
No 206
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.63 E-value=9.7e-15 Score=120.71 Aligned_cols=200 Identities=19% Similarity=0.257 Sum_probs=139.2
Q ss_pred EccCCCEEEE--ecCCCeEEEEeCCCC-eEEE-EEeccCCcccEEEEEEcccCCCCeEEEeecCCeEEEEeCCCCCCCCC
Q 021291 26 FHQTKPILFA--GTTGGELRIWDTVQH-RTVS-SSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGGLSSN 101 (314)
Q Consensus 26 ~~~~~~~l~s--~~~dg~v~iwd~~~~-~~~~-~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~ 101 (314)
|+.+..++|. .+.-|.|-||++... +..- .+.+-.....|+.+.|.|. |...|+.+++||.|++|.+..+.+...
T Consensus 587 fcan~~rvAVPL~g~gG~iai~el~~PGrLPDgv~p~l~Ngt~vtDl~WdPF-D~~rLAVa~ddg~i~lWr~~a~gl~e~ 665 (1012)
T KOG1445|consen 587 FCANNKRVAVPLAGSGGVIAIYELNEPGRLPDGVMPGLFNGTLVTDLHWDPF-DDERLAVATDDGQINLWRLTANGLPEN 665 (1012)
T ss_pred eeeccceEEEEecCCCceEEEEEcCCCCCCCcccccccccCceeeecccCCC-ChHHeeecccCceEEEEEeccCCCCcc
Confidence 3334445553 456789999998753 3211 1111111145999999998 669999999999999999987654321
Q ss_pred ---C--eeeeecceeeEEEeeeeeccccccccCCCCcceeeccCCceeeecCCCCCCceeccCCCceEEEeecCcCeEEE
Q 021291 102 ---P--SLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQLSEVEI 176 (314)
Q Consensus 102 ---~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~v 176 (314)
| +++.+...+.. +.|+|-...+++ +++.|-+|++
T Consensus 666 ~~tPe~~lt~h~eKI~s----------------------------------------lRfHPLAadvLa-~asyd~Ti~l 704 (1012)
T KOG1445|consen 666 EMTPEKILTIHGEKITS----------------------------------------LRFHPLAADVLA-VASYDSTIEL 704 (1012)
T ss_pred cCCcceeeecccceEEE----------------------------------------EEecchhhhHhh-hhhccceeee
Confidence 1 11222222211 446666666666 5667999999
Q ss_pred EecCCCceeeeecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEeecCCcEEEEEccCCCCceEeeecCCc-ce
Q 021291 177 WDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHLE-PV 255 (314)
Q Consensus 177 wd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~h~~-~v 255 (314)
||+++++....+. +| .+.+..++ |+|+ |+ .+++.+.||+|++|.-+...+++++-.+..+ .-
T Consensus 705 WDl~~~~~~~~l~--------gH----tdqIf~~A-WSpd---Gr-~~AtVcKDg~~rVy~Prs~e~pv~Eg~gpvgtRg 767 (1012)
T KOG1445|consen 705 WDLANAKLYSRLV--------GH----TDQIFGIA-WSPD---GR-RIATVCKDGTLRVYEPRSREQPVYEGKGPVGTRG 767 (1012)
T ss_pred eehhhhhhhheec--------cC----cCceeEEE-ECCC---Cc-ceeeeecCceEEEeCCCCCCCccccCCCCccCcc
Confidence 9999999888888 78 44788887 9998 76 8999999999999999987777776554322 33
Q ss_pred EEEEEeCCCCeEEEecCCC----cEEEEecCCC
Q 021291 256 LCLSIDESCNGGISGGADQ----KIVLYNLDHS 284 (314)
Q Consensus 256 ~~~~~~~~~~~l~s~s~dg----~i~iw~~~~~ 284 (314)
-.+.|--+|++++..+.|. .|.+||.++-
T Consensus 768 ARi~wacdgr~viv~Gfdk~SeRQv~~Y~Aq~l 800 (1012)
T KOG1445|consen 768 ARILWACDGRIVIVVGFDKSSERQVQMYDAQTL 800 (1012)
T ss_pred eeEEEEecCcEEEEecccccchhhhhhhhhhhc
Confidence 4577877888887777664 4777776543
No 207
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.62 E-value=3.1e-14 Score=123.98 Aligned_cols=208 Identities=17% Similarity=0.188 Sum_probs=137.7
Q ss_pred EEEEccCCCEEEEecCCCeEEEEeCCCCeEEEEEeccCCcccEEEEEEcccCCCCeEEEeecCCeEEEEeCCCCCCCCCC
Q 021291 23 DVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGGLSSNP 102 (314)
Q Consensus 23 ~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~ 102 (314)
-++|..+..+|+++|.-..|+|||..+..+...+..... ..|+++.-+-. .|+.+++|..||.|++||.+...... +
T Consensus 1170 v~dWqQ~~G~Ll~tGd~r~IRIWDa~~E~~~~diP~~s~-t~vTaLS~~~~-~gn~i~AGfaDGsvRvyD~R~a~~ds-~ 1246 (1387)
T KOG1517|consen 1170 VVDWQQQSGHLLVTGDVRSIRIWDAHKEQVVADIPYGSS-TLVTALSADLV-HGNIIAAGFADGSVRVYDRRMAPPDS-L 1246 (1387)
T ss_pred eeehhhhCCeEEecCCeeEEEEEecccceeEeecccCCC-ccceeeccccc-CCceEEEeecCCceEEeecccCCccc-c
Confidence 356777555666666688999999998887777654432 45788776542 57999999999999999998653211 0
Q ss_pred eeeeecceeeEEEeeeeeccccccccCCCCcceeeccCCceeeecCCCCCCceeccCCCceEEEeecCcCeEEEEecCCC
Q 021291 103 SLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQLSEVEIWDLNTA 182 (314)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~vwd~~~~ 182 (314)
+...+.+........ +.+.+.|-.-++ +|+.||.|++||++..
T Consensus 1247 v~~~R~h~~~~~Iv~------------------------------------~slq~~G~~elv-Sgs~~G~I~~~DlR~~ 1289 (1387)
T KOG1517|consen 1247 VCVYREHNDVEPIVH------------------------------------LSLQRQGLGELV-SGSQDGDIQLLDLRMS 1289 (1387)
T ss_pred ceeecccCCccccee------------------------------------EEeecCCCccee-eeccCCeEEEEecccC
Confidence 111111111100000 345555544343 7888999999999985
Q ss_pred ceeeeecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEeecCCcEEEEEccCCCCceEeeecC-------Ccce
Q 021291 183 ERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVH-------LEPV 255 (314)
Q Consensus 183 ~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~h-------~~~v 255 (314)
.....+... .|.. ..+..+++. .++..+ ++|+|+. +.|+||++. ++.+..++.+ ...+
T Consensus 1290 ~~e~~~~iv------~~~~-yGs~lTal~-VH~hap----iiAsGs~-q~ikIy~~~--G~~l~~~k~n~~F~~q~~gs~ 1354 (1387)
T KOG1517|consen 1290 SKETFLTIV------AHWE-YGSALTALT-VHEHAP----IIASGSA-QLIKIYSLS--GEQLNIIKYNPGFMGQRIGSV 1354 (1387)
T ss_pred cccccceee------eccc-cCccceeee-eccCCC----eeeecCc-ceEEEEecC--hhhhcccccCcccccCcCCCc
Confidence 333322211 2211 122467776 777744 8999988 999999998 4444444322 3467
Q ss_pred EEEEEeCCCCeEEEecCCCcEEEEecCCCe
Q 021291 256 LCLSIDESCNGGISGGADQKIVLYNLDHST 285 (314)
Q Consensus 256 ~~~~~~~~~~~l~s~s~dg~i~iw~~~~~~ 285 (314)
.+++|+|...++|.|+.|..|.||..+.++
T Consensus 1355 scL~FHP~~~llAaG~~Ds~V~iYs~~k~~ 1384 (1387)
T KOG1517|consen 1355 SCLAFHPHRLLLAAGSADSTVSIYSCEKPR 1384 (1387)
T ss_pred ceeeecchhHhhhhccCCceEEEeecCCcC
Confidence 999999999999999999999999877654
No 208
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.61 E-value=3.6e-13 Score=110.16 Aligned_cols=253 Identities=15% Similarity=0.123 Sum_probs=153.1
Q ss_pred CCCCceeEEEEccCCCEE-EEecCCCeEEEEeCCCCeEEEEEeccCCcccEEEEEEcccCCCCeEEEeecCCeEEEEeCC
Q 021291 16 GHRASVTDVCFHQTKPIL-FAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIE 94 (314)
Q Consensus 16 ~h~~~v~~~~~~~~~~~l-~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd~~ 94 (314)
+|...-+.|..+|||+|+ |||.+--.|++||+.+-. ..+.-|..+..|.-.-.+. |-..++---.|.+|.+-..-
T Consensus 49 e~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanLS--LKFERhlDae~V~feiLsD--D~SK~v~L~~DR~IefHak~ 124 (703)
T KOG2321|consen 49 EMPTASTRIKVSPDGQYLLATGTYKPQIKVYDLANLS--LKFERHLDAEVVDFEILSD--DYSKSVFLQNDRTIEFHAKY 124 (703)
T ss_pred CCccccceeEecCCCcEEEEecccCCceEEEEcccce--eeeeecccccceeEEEecc--chhhheEeecCceeeehhhc
Confidence 477888999999999975 678889999999987543 3455565545565555555 65666666677777664332
Q ss_pred CCCCCCCCeeeeecceeeEEEeeeeeccccccccCCCCcceeeccCCceeeecCCCCCC---ceeccCCCceEEEeecCc
Q 021291 95 NGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSK---DDVPAEGPKYMAVAGEQL 171 (314)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~g~~d 171 (314)
.... ...++......+ ++ ..+-.......+.....+++..++.+.-....... +..++... |+++|+.|
T Consensus 125 G~hy----~~RIP~~GRDm~-y~-~~scDly~~gsg~evYRlNLEqGrfL~P~~~~~~~lN~v~in~~hg--Lla~Gt~~ 196 (703)
T KOG2321|consen 125 GRHY----RTRIPKFGRDMK-YH-KPSCDLYLVGSGSEVYRLNLEQGRFLNPFETDSGELNVVSINEEHG--LLACGTED 196 (703)
T ss_pred Ceee----eeecCcCCcccc-cc-CCCccEEEeecCcceEEEEccccccccccccccccceeeeecCccc--eEEecccC
Confidence 2110 000110000000 00 00111223333444444455555433322111111 55666543 44478889
Q ss_pred CeEEEEecCCCceeeeecccccCCCCCcCC-CCCceeeeEEEecCCCCCCceEEEEeecCCcEEEEEccCCCCceEe-ee
Q 021291 172 SEVEIWDLNTAERCTRLHQNSCGGSPNFSS-KGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTA-MK 249 (314)
Q Consensus 172 ~~i~vwd~~~~~~~~~~~~~~~~~~~~h~~-~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~~~-~~ 249 (314)
|.|.+||.++...+.++.....+++ |+. .....++++. |+.+ |- .+++|..+|.|.|||++. .+++.. -.
T Consensus 197 g~VEfwDpR~ksrv~~l~~~~~v~s--~pg~~~~~svTal~-F~d~---gL-~~aVGts~G~v~iyDLRa-~~pl~~kdh 268 (703)
T KOG2321|consen 197 GVVEFWDPRDKSRVGTLDAASSVNS--HPGGDAAPSVTALK-FRDD---GL-HVAVGTSTGSVLIYDLRA-SKPLLVKDH 268 (703)
T ss_pred ceEEEecchhhhhheeeecccccCC--CccccccCcceEEE-ecCC---ce-eEEeeccCCcEEEEEccc-CCceeeccc
Confidence 9999999999887777764332221 221 1233577887 9876 44 899999999999999998 555543 33
Q ss_pred cCCcceEEEEEeCC--CCeEEEecCCCcEEEEecCCCeeeEe
Q 021291 250 VHLEPVLCLSIDES--CNGGISGGADQKIVLYNLDHSTYVLF 289 (314)
Q Consensus 250 ~h~~~v~~~~~~~~--~~~l~s~s~dg~i~iw~~~~~~~~~~ 289 (314)
+..-+|..+.|.+. ...|+|. ....++|||-.+|+....
T Consensus 269 ~~e~pi~~l~~~~~~~q~~v~S~-Dk~~~kiWd~~~Gk~~as 309 (703)
T KOG2321|consen 269 GYELPIKKLDWQDTDQQNKVVSM-DKRILKIWDECTGKPMAS 309 (703)
T ss_pred CCccceeeecccccCCCceEEec-chHHhhhcccccCCceee
Confidence 44568999999443 4445554 456899999999987653
No 209
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.60 E-value=1.2e-12 Score=110.79 Aligned_cols=223 Identities=12% Similarity=0.030 Sum_probs=133.4
Q ss_pred EEecCCCCceeEEEEccCCCEEEEec---CCCeEEEEeCCCCeEEEEEeccCCcccEEEEEEcccCCCCeEEEe-ecCC-
Q 021291 12 AVLRGHRASVTDVCFHQTKPILFAGT---TGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQ-GRDG- 86 (314)
Q Consensus 12 ~~l~~h~~~v~~~~~~~~~~~l~s~~---~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~-~~dg- 86 (314)
+.+..+...+...+|+|||+.|+..+ .+..|.+|++.+++..... ... ..+....|+| ||+.|+.. +.+|
T Consensus 192 ~~lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~l~-~~~--~~~~~~~~SP--DG~~La~~~~~~g~ 266 (429)
T PRK03629 192 FVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVA-SFP--RHNGAPAFSP--DGSKLAFALSKTGS 266 (429)
T ss_pred EEeecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEEcc-CCC--CCcCCeEECC--CCCEEEEEEcCCCC
Confidence 44445667899999999999888653 3457999999887643322 222 2255789999 99988754 4455
Q ss_pred -eEEEEeCCCCCCCCCCeeeeecceeeEEEeeeeeccccccccCCCCcceeeccCCceeeecCCCCCCceeccCCCceEE
Q 021291 87 -TVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMA 165 (314)
Q Consensus 87 -~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (314)
.|.+||+.+++... +....... ...+|+|+|+.++.
T Consensus 267 ~~I~~~d~~tg~~~~-----lt~~~~~~--------------------------------------~~~~wSPDG~~I~f 303 (429)
T PRK03629 267 LNLYVMDLASGQIRQ-----VTDGRSNN--------------------------------------TEPTWFPDSQNLAY 303 (429)
T ss_pred cEEEEEECCCCCEEE-----ccCCCCCc--------------------------------------CceEECCCCCEEEE
Confidence 58889998765321 11100000 00569999987765
Q ss_pred EeecCcC--eEEEEecCCCceeeeecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEE-eecC--CcEEEEEccC
Q 021291 166 VAGEQLS--EVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLA-GYED--GSILVWDIRN 240 (314)
Q Consensus 166 ~~g~~d~--~i~vwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~-g~~d--g~i~vwd~~~ 240 (314)
++ ..++ .|.++|+.+++.. .+. .. ........ |+|+ |+ +|+. +..+ ..|.+||+.+
T Consensus 304 ~s-~~~g~~~Iy~~d~~~g~~~-~lt--------~~----~~~~~~~~-~SpD---G~-~Ia~~~~~~g~~~I~~~dl~~ 364 (429)
T PRK03629 304 TS-DQAGRPQVYKVNINGGAPQ-RIT--------WE----GSQNQDAD-VSSD---GK-FMVMVSSNGGQQHIAKQDLAT 364 (429)
T ss_pred Ee-CCCCCceEEEEECCCCCeE-Eee--------cC----CCCccCEE-ECCC---CC-EEEEEEccCCCceEEEEECCC
Confidence 43 3334 4555577665432 332 11 11223444 9998 55 4544 4333 3588899886
Q ss_pred CCCceEeeecCCcceEEEEEeCCCCeEEEecCCCc---EEEEecCCCeeeEeeeeeeecCCCceeceeeccc
Q 021291 241 PGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQK---IVLYNLDHSTYVLFGIGFVCDQEGNKFGTTWHIR 309 (314)
Q Consensus 241 ~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~---i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~ 309 (314)
+. ...+... .......|+|||++|+.++.++. +.+++++.+. ...+.+ .++......|.+.
T Consensus 365 -g~-~~~Lt~~-~~~~~p~~SpDG~~i~~~s~~~~~~~l~~~~~~G~~-~~~l~~----~~~~~~~p~Wsp~ 428 (429)
T PRK03629 365 -GG-VQVLTDT-FLDETPSIAPNGTMVIYSSSQGMGSVLNLVSTDGRF-KARLPA----TDGQVKFPAWSPY 428 (429)
T ss_pred -CC-eEEeCCC-CCCCCceECCCCCEEEEEEcCCCceEEEEEECCCCC-eEECcc----CCCCcCCcccCCC
Confidence 44 3334321 23346789999999998888764 6777775433 333222 3455556667653
No 210
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.59 E-value=2e-12 Score=110.06 Aligned_cols=226 Identities=11% Similarity=0.017 Sum_probs=138.6
Q ss_pred CCceEEecCCCCceeEEEEccCCCEEEEecC---CCeEEEEeCCCCeEEEEEeccCCcccEEEEEEcccCCCCeEE-Eee
Q 021291 8 PDPVAVLRGHRASVTDVCFHQTKPILFAGTT---GGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVI-SQG 83 (314)
Q Consensus 8 ~~~~~~l~~h~~~v~~~~~~~~~~~l~s~~~---dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~-s~~ 83 (314)
+...+.+..|...+.+.+|+|||+.|+..+. +..|.+||+.+++.. .+..+. ..+...+|+| ||+.|+ +.+
T Consensus 191 g~~~~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~-~l~~~~--g~~~~~~~SP--DG~~la~~~~ 265 (435)
T PRK05137 191 GANVRYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRE-LVGNFP--GMTFAPRFSP--DGRKVVMSLS 265 (435)
T ss_pred CCCcEEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEE-EeecCC--CcccCcEECC--CCCEEEEEEe
Confidence 3445667778889999999999998887653 468999999887654 343444 3377899999 998775 556
Q ss_pred cCCe--EEEEeCCCCCCCCCCeeeeecceeeEEEeeeeeccccccccCCCCcceeeccCCceeeecCCCCCCceeccCCC
Q 021291 84 RDGT--VKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGP 161 (314)
Q Consensus 84 ~dg~--v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (314)
.++. |.+||+.+++... +...... .. ..+|+|+|+
T Consensus 266 ~~g~~~Iy~~d~~~~~~~~-----Lt~~~~~--~~------------------------------------~~~~spDG~ 302 (435)
T PRK05137 266 QGGNTDIYTMDLRSGTTTR-----LTDSPAI--DT------------------------------------SPSYSPDGS 302 (435)
T ss_pred cCCCceEEEEECCCCceEE-----ccCCCCc--cC------------------------------------ceeEcCCCC
Confidence 6655 7777887765321 1111100 00 045999998
Q ss_pred ceEEEeecCc--CeEEEEecCCCceeeeecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEeec-C--CcEEEE
Q 021291 162 KYMAVAGEQL--SEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYE-D--GSILVW 236 (314)
Q Consensus 162 ~~~~~~g~~d--~~i~vwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~-d--g~i~vw 236 (314)
.++.++ ..+ ..|+++|+..++.. .+.. + .+...... |+|+ |+ .|+.... . ..|.+|
T Consensus 303 ~i~f~s-~~~g~~~Iy~~d~~g~~~~-~lt~--------~----~~~~~~~~-~Spd---G~-~ia~~~~~~~~~~i~~~ 363 (435)
T PRK05137 303 QIVFES-DRSGSPQLYVMNADGSNPR-RISF--------G----GGRYSTPV-WSPR---GD-LIAFTKQGGGQFSIGVM 363 (435)
T ss_pred EEEEEE-CCCCCCeEEEEECCCCCeE-Eeec--------C----CCcccCeE-ECCC---CC-EEEEEEcCCCceEEEEE
Confidence 776543 223 36888898765543 3331 1 11233444 9998 55 5554433 2 368888
Q ss_pred EccCCCCceEeeecCCcceEEEEEeCCCCeEEEecCC------CcEEEEecCCCeeeEeeeeeeecCCCceeceeeccc
Q 021291 237 DIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGAD------QKIVLYNLDHSTYVLFGIGFVCDQEGNKFGTTWHIR 309 (314)
Q Consensus 237 d~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d------g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~ 309 (314)
|+.. + ....+.. ...+....|+|||+.|+..+.+ ..+.++|++.+... .+ . ..+......|.+.
T Consensus 364 d~~~-~-~~~~lt~-~~~~~~p~~spDG~~i~~~~~~~~~~~~~~L~~~dl~g~~~~-~l---~--~~~~~~~p~Wsp~ 433 (435)
T PRK05137 364 KPDG-S-GERILTS-GFLVEGPTWAPNGRVIMFFRQTPGSGGAPKLYTVDLTGRNER-EV---P--TPGDASDPAWSPL 433 (435)
T ss_pred ECCC-C-ceEeccC-CCCCCCCeECCCCCEEEEEEccCCCCCcceEEEEECCCCceE-Ec---c--CCCCccCcccCCC
Confidence 8764 3 2333332 2356788999999988665442 25777887765442 21 1 2333445577654
No 211
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.59 E-value=2.7e-13 Score=114.89 Aligned_cols=196 Identities=14% Similarity=0.092 Sum_probs=123.2
Q ss_pred CCeEEEEeCCCCeEEEEEeccCCcccEEEEEEcccCCCCeEEEeecC---CeEEEEeCCCCCCCCCCeeeeecceeeEEE
Q 021291 39 GGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRD---GTVKCWDIENGGLSSNPSLTIKTNSYHFCK 115 (314)
Q Consensus 39 dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d---g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~ 115 (314)
+..|.+||.+... ...+..+. ..+...+|+| +|+.|+.++.+ ..|.+||+.+++... +........
T Consensus 183 ~~~i~i~d~dg~~-~~~lt~~~--~~v~~p~wSP--DG~~la~~s~~~~~~~i~i~dl~tg~~~~--l~~~~g~~~---- 251 (429)
T PRK01742 183 PYEVRVADYDGFN-QFIVNRSS--QPLMSPAWSP--DGSKLAYVSFENKKSQLVVHDLRSGARKV--VASFRGHNG---- 251 (429)
T ss_pred eEEEEEECCCCCC-ceEeccCC--CccccceEcC--CCCEEEEEEecCCCcEEEEEeCCCCceEE--EecCCCccC----
Confidence 5789999986544 45555565 4499999999 99999987654 369999998764311 111110000
Q ss_pred eeeeeccccccccCCCCcceeeccCCceeeecCCCCCCceeccCCCceEEEeecCcCeEEE--EecCCCceeeeeccccc
Q 021291 116 LSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQLSEVEI--WDLNTAERCTRLHQNSC 193 (314)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~v--wd~~~~~~~~~~~~~~~ 193 (314)
..+|+|+|+.+++ +.+.+|.+.| ||+.+++. ..+.
T Consensus 252 -------------------------------------~~~wSPDG~~La~-~~~~~g~~~Iy~~d~~~~~~-~~lt---- 288 (429)
T PRK01742 252 -------------------------------------APAFSPDGSRLAF-ASSKDGVLNIYVMGANGGTP-SQLT---- 288 (429)
T ss_pred -------------------------------------ceeECCCCCEEEE-EEecCCcEEEEEEECCCCCe-Eeec----
Confidence 0569999987765 3444676555 56665543 3343
Q ss_pred CCCCCcCCCCCceeeeEEEecCCCCCCceEEEEeecCCcEEEEEccCCCCceEeeecCCcceEEEEEeCCCCeEEEecCC
Q 021291 194 GGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGAD 273 (314)
Q Consensus 194 ~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d 273 (314)
.+ ........ |+|| |+.+++++..++...||+++..+.....+ .+.. ....|+|+|++|+..+.+
T Consensus 289 ----~~----~~~~~~~~-wSpD---G~~i~f~s~~~g~~~I~~~~~~~~~~~~l-~~~~--~~~~~SpDG~~ia~~~~~ 353 (429)
T PRK01742 289 ----SG----AGNNTEPS-WSPD---GQSILFTSDRSGSPQVYRMSASGGGASLV-GGRG--YSAQISADGKTLVMINGD 353 (429)
T ss_pred ----cC----CCCcCCEE-ECCC---CCEEEEEECCCCCceEEEEECCCCCeEEe-cCCC--CCccCCCCCCEEEEEcCC
Confidence 22 22344555 9998 55345555567888899876533333333 3433 457899999999888776
Q ss_pred CcEEEEecCCCeeeEe-----eeeeeecCCCceece
Q 021291 274 QKIVLYNLDHSTYVLF-----GIGFVCDQEGNKFGT 304 (314)
Q Consensus 274 g~i~iw~~~~~~~~~~-----~~~~~~~~~~~~~~~ 304 (314)
+ +.+||+.+++.... ....+++|+|..+..
T Consensus 354 ~-i~~~Dl~~g~~~~lt~~~~~~~~~~sPdG~~i~~ 388 (429)
T PRK01742 354 N-VVKQDLTSGSTEVLSSTFLDESPSISPNGIMIIY 388 (429)
T ss_pred C-EEEEECCCCCeEEecCCCCCCCceECCCCCEEEE
Confidence 5 56699988764322 122356777765554
No 212
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.58 E-value=3.9e-13 Score=100.71 Aligned_cols=157 Identities=16% Similarity=0.272 Sum_probs=102.5
Q ss_pred eEEEEccCCCEEEEecC----------CCeEEEEeCCC-CeEEEEEeccCCcccEEEEEEcccCCCCeEEE--eecCCeE
Q 021291 22 TDVCFHQTKPILFAGTT----------GGELRIWDTVQ-HRTVSSSWVHSAAHGIVSVATGPSIGLNKVIS--QGRDGTV 88 (314)
Q Consensus 22 ~~~~~~~~~~~l~s~~~----------dg~v~iwd~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s--~~~dg~v 88 (314)
..+.|+++|++|+.-.. -|...||.++. +.....+..... .+|.+++|+| +++.|+. |..++.|
T Consensus 9 ~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~~-~~I~~~~WsP--~g~~favi~g~~~~~v 85 (194)
T PF08662_consen 9 AKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKKE-GPIHDVAWSP--NGNEFAVIYGSMPAKV 85 (194)
T ss_pred EEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccCC-CceEEEEECc--CCCEEEEEEccCCccc
Confidence 45789999987765332 23455555532 334444443322 3499999999 8888764 4467899
Q ss_pred EEEeCCCCCCCCCCeeeeecceeeEEEeeeeeccccccccCCCCcceeeccCCceeeecCCCCCCceeccCCCceEEEe-
Q 021291 89 KCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVA- 167 (314)
Q Consensus 89 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 167 (314)
.+||++.. ++..+....... +.|+|+|+.+++++
T Consensus 86 ~lyd~~~~-----~i~~~~~~~~n~----------------------------------------i~wsP~G~~l~~~g~ 120 (194)
T PF08662_consen 86 TLYDVKGK-----KIFSFGTQPRNT----------------------------------------ISWSPDGRFLVLAGF 120 (194)
T ss_pred EEEcCccc-----EeEeecCCCceE----------------------------------------EEECCCCCEEEEEEc
Confidence 99999722 133333322211 56999998776532
Q ss_pred ecCcCeEEEEecCCCceeeeecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEeec------CCcEEEEEccCC
Q 021291 168 GEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYE------DGSILVWDIRNP 241 (314)
Q Consensus 168 g~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~------dg~i~vwd~~~~ 241 (314)
+...|.|.+||.++.+.+..+. | ..+..+. |+|+ |+ +++++.. |..++||+..
T Consensus 121 ~n~~G~l~~wd~~~~~~i~~~~---------~-----~~~t~~~-WsPd---Gr-~~~ta~t~~r~~~dng~~Iw~~~-- 179 (194)
T PF08662_consen 121 GNLNGDLEFWDVRKKKKISTFE---------H-----SDATDVE-WSPD---GR-YLATATTSPRLRVDNGFKIWSFQ-- 179 (194)
T ss_pred cCCCcEEEEEECCCCEEeeccc---------c-----CcEEEEE-EcCC---CC-EEEEEEeccceeccccEEEEEec--
Confidence 1335789999999888877665 2 2356776 9998 77 6666653 7889999986
Q ss_pred CCceEe
Q 021291 242 GIPLTA 247 (314)
Q Consensus 242 ~~~~~~ 247 (314)
++.+..
T Consensus 180 G~~l~~ 185 (194)
T PF08662_consen 180 GRLLYK 185 (194)
T ss_pred CeEeEe
Confidence 555544
No 213
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.58 E-value=1.2e-12 Score=111.18 Aligned_cols=207 Identities=10% Similarity=0.011 Sum_probs=128.5
Q ss_pred CCceEEecCCCCceeEEEEccCCCEEEEecC---CCeEEEEeCCCCeEEEEEeccCCcccEEEEEEcccCCCCeEE-Eee
Q 021291 8 PDPVAVLRGHRASVTDVCFHQTKPILFAGTT---GGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVI-SQG 83 (314)
Q Consensus 8 ~~~~~~l~~h~~~v~~~~~~~~~~~l~s~~~---dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~-s~~ 83 (314)
+...+.+..|...+.+.+|+|||+.|+..+. +..|.+||+.+++... +.... ....+.+|+| +++.|+ +.+
T Consensus 193 g~~~~~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~-l~~~~--g~~~~~~~Sp--DG~~l~~~~s 267 (433)
T PRK04922 193 GYNPQTILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQREL-VASFR--GINGAPSFSP--DGRRLALTLS 267 (433)
T ss_pred CCCceEeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEE-eccCC--CCccCceECC--CCCEEEEEEe
Confidence 3445556667788999999999999887764 3479999998876543 32233 2256789999 988775 555
Q ss_pred cCC--eEEEEeCCCCCCCCCCeeeeecceeeEEEeeeeeccccccccCCCCcceeeccCCceeeecCCCCCCceeccCCC
Q 021291 84 RDG--TVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGP 161 (314)
Q Consensus 84 ~dg--~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (314)
.+| .|.+||+.+++... +....... ...+|+|+|+
T Consensus 268 ~~g~~~Iy~~d~~~g~~~~-----lt~~~~~~--------------------------------------~~~~~spDG~ 304 (433)
T PRK04922 268 RDGNPEIYVMDLGSRQLTR-----LTNHFGID--------------------------------------TEPTWAPDGK 304 (433)
T ss_pred CCCCceEEEEECCCCCeEE-----CccCCCCc--------------------------------------cceEECCCCC
Confidence 555 59999998775321 11110000 0045999998
Q ss_pred ceEEEeecCcC--eEEEEecCCCceeeeecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEee-cCC--cEEEE
Q 021291 162 KYMAVAGEQLS--EVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGY-EDG--SILVW 236 (314)
Q Consensus 162 ~~~~~~g~~d~--~i~vwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~-~dg--~i~vw 236 (314)
.++.+ ...++ .|+++|+.+++.. .+... +. ...... |+|+ |+ .|+..+ .++ .|.+|
T Consensus 305 ~l~f~-sd~~g~~~iy~~dl~~g~~~-~lt~~------g~------~~~~~~-~SpD---G~-~Ia~~~~~~~~~~I~v~ 365 (433)
T PRK04922 305 SIYFT-SDRGGRPQIYRVAASGGSAE-RLTFQ------GN------YNARAS-VSPD---GK-KIAMVHGSGGQYRIAVM 365 (433)
T ss_pred EEEEE-ECCCCCceEEEEECCCCCeE-EeecC------CC------CccCEE-ECCC---CC-EEEEEECCCCceeEEEE
Confidence 77654 33344 4777777666532 22210 11 222445 9998 55 555443 332 69999
Q ss_pred EccCCCCceEeeecCCcceEEEEEeCCCCeEEEecCC---CcEEEEecCCC
Q 021291 237 DIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGAD---QKIVLYNLDHS 284 (314)
Q Consensus 237 d~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d---g~i~iw~~~~~ 284 (314)
|+.+ ++.. .+. +........|+|+|++|+..+.+ +.|.+++++.+
T Consensus 366 d~~~-g~~~-~Lt-~~~~~~~p~~spdG~~i~~~s~~~g~~~L~~~~~~g~ 413 (433)
T PRK04922 366 DLST-GSVR-TLT-PGSLDESPSFAPNGSMVLYATREGGRGVLAAVSTDGR 413 (433)
T ss_pred ECCC-CCeE-ECC-CCCCCCCceECCCCCEEEEEEecCCceEEEEEECCCC
Confidence 9976 4433 343 23345567999999988766653 35777887543
No 214
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.57 E-value=2.7e-12 Score=108.71 Aligned_cols=226 Identities=12% Similarity=0.057 Sum_probs=134.0
Q ss_pred CceEEecCCCCceeEEEEccCCCEEEEecCC---CeEEEEeCCCCeEEEEEeccCCcccEEEEEEcccCCCCeEE-Eeec
Q 021291 9 DPVAVLRGHRASVTDVCFHQTKPILFAGTTG---GELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVI-SQGR 84 (314)
Q Consensus 9 ~~~~~l~~h~~~v~~~~~~~~~~~l~s~~~d---g~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~-s~~~ 84 (314)
...+.+..+...+.+.+|+|||+.|+..+.+ ..|.+||+.+++... +.... ..+...+|+| |++.|+ +.+.
T Consensus 186 ~~~~~l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~-l~~~~--g~~~~~~~SP--DG~~la~~~~~ 260 (427)
T PRK02889 186 QNAQSALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRV-VANFK--GSNSAPAWSP--DGRTLAVALSR 260 (427)
T ss_pred CCceEeccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEE-eecCC--CCccceEECC--CCCEEEEEEcc
Confidence 3445556678889999999999998876643 469999998886543 33233 2367899999 998876 5677
Q ss_pred CCeEEEEeC--CCCCCCCCCeeeeecceeeEEEeeeeeccccccccCCCCcceeeccCCceeeecCCCCCCceeccCCCc
Q 021291 85 DGTVKCWDI--ENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPK 162 (314)
Q Consensus 85 dg~v~iwd~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (314)
+|...||.+ .++... .+....... ...+|+|||+.
T Consensus 261 ~g~~~Iy~~d~~~~~~~-----~lt~~~~~~--------------------------------------~~~~wSpDG~~ 297 (427)
T PRK02889 261 DGNSQIYTVNADGSGLR-----RLTQSSGID--------------------------------------TEPFFSPDGRS 297 (427)
T ss_pred CCCceEEEEECCCCCcE-----ECCCCCCCC--------------------------------------cCeEEcCCCCE
Confidence 887777655 333211 111100000 00459999988
Q ss_pred eEEEeecCcCeEEEEec--CCCceeeeecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEeecCC---cEEEEE
Q 021291 163 YMAVAGEQLSEVEIWDL--NTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDG---SILVWD 237 (314)
Q Consensus 163 ~~~~~g~~d~~i~vwd~--~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg---~i~vwd 237 (314)
++.+ +..++...+|.+ .+++. ..+... + ....... |+|+ |+ +|+..+.++ .|.+||
T Consensus 298 l~f~-s~~~g~~~Iy~~~~~~g~~-~~lt~~------g------~~~~~~~-~SpD---G~-~Ia~~s~~~g~~~I~v~d 358 (427)
T PRK02889 298 IYFT-SDRGGAPQIYRMPASGGAA-QRVTFT------G------SYNTSPR-ISPD---GK-LLAYISRVGGAFKLYVQD 358 (427)
T ss_pred EEEE-ecCCCCcEEEEEECCCCce-EEEecC------C------CCcCceE-ECCC---CC-EEEEEEccCCcEEEEEEE
Confidence 7654 433455566654 44432 222210 1 1122344 9998 55 565554443 699999
Q ss_pred ccCCCCceEeeecCCcceEEEEEeCCCCeEEEecCCC---cEEEEecCCCeeeEeeeeeeecCCCceeceeeccc
Q 021291 238 IRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQ---KIVLYNLDHSTYVLFGIGFVCDQEGNKFGTTWHIR 309 (314)
Q Consensus 238 ~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg---~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~ 309 (314)
+.+ +... .+.. ........|+|+|+.|+..+.++ .+.+.+++ ++..... ..+.|..-...|.+.
T Consensus 359 ~~~-g~~~-~lt~-~~~~~~p~~spdg~~l~~~~~~~g~~~l~~~~~~-g~~~~~l----~~~~g~~~~p~wsp~ 425 (427)
T PRK02889 359 LAT-GQVT-ALTD-TTRDESPSFAPNGRYILYATQQGGRSVLAAVSSD-GRIKQRL----SVQGGDVREPSWGPF 425 (427)
T ss_pred CCC-CCeE-EccC-CCCccCceECCCCCEEEEEEecCCCEEEEEEECC-CCceEEe----ecCCCCCCCCccCCC
Confidence 986 4433 3332 23346789999999987777544 24455553 3322222 135566666677654
No 215
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.57 E-value=7.2e-13 Score=100.97 Aligned_cols=223 Identities=15% Similarity=0.093 Sum_probs=146.7
Q ss_pred CCCceEEecCCCCceeEEEEccCCCEEEEecCCCeEEEEeC-CCCeE--EEEEeccCCcccEEEEEEcccCCCCeEEEee
Q 021291 7 PPDPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDT-VQHRT--VSSSWVHSAAHGIVSVATGPSIGLNKVISQG 83 (314)
Q Consensus 7 ~~~~~~~l~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~-~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~ 83 (314)
+.++.++|+.|...|++++|+|..+.|++|+.|..-+||.. ..++- ...+..+. ...+++.|+| .++.|++|+
T Consensus 44 ~w~~~htls~Hd~~vtgvdWap~snrIvtcs~drnayVw~~~~~~~WkptlvLlRiN--rAAt~V~WsP--~enkFAVgS 119 (361)
T KOG1523|consen 44 LWEPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRNAYVWTQPSGGTWKPTLVLLRIN--RAATCVKWSP--KENKFAVGS 119 (361)
T ss_pred CceeceehhhhCcceeEEeecCCCCceeEccCCCCccccccCCCCeeccceeEEEec--cceeeEeecC--cCceEEecc
Confidence 35789999999999999999999999999999999999998 44433 33344455 4499999999 899999999
Q ss_pred cCCeEEEEeCCCCCCCCCCeeeeecceeeEEEeeeeeccccccccCCCCcceeeccCCceeeecCCCCCCceeccCCCce
Q 021291 84 RDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKY 163 (314)
Q Consensus 84 ~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (314)
....|.||-++...--. +-..-..+......+ ++|+|++ .
T Consensus 120 gar~isVcy~E~ENdWW--VsKhikkPirStv~s------------------------------------ldWhpnn--V 159 (361)
T KOG1523|consen 120 GARLISVCYYEQENDWW--VSKHIKKPIRSTVTS------------------------------------LDWHPNN--V 159 (361)
T ss_pred CccEEEEEEEeccccee--hhhhhCCccccceee------------------------------------eeccCCc--c
Confidence 99999999887643221 000011111111111 5688876 3
Q ss_pred EEEeecCcCeEEEEecCCCce-----e----eeecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEeecCCcEE
Q 021291 164 MAVAGEQLSEVEIWDLNTAER-----C----TRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSIL 234 (314)
Q Consensus 164 ~~~~g~~d~~i~vwd~~~~~~-----~----~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~ 234 (314)
++++|+.|+..++|..--... . ..++..+. ........+.+..+. |+|+ |. .|+-.+.|..+.
T Consensus 160 LlaaGs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~l---m~E~~~~ggwvh~v~-fs~s---G~-~lawv~Hds~v~ 231 (361)
T KOG1523|consen 160 LLAAGSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQL---MSEASSSGGWVHGVL-FSPS---GN-RLAWVGHDSTVS 231 (361)
T ss_pred eecccccCcceeEEEEeeeccccCCCCCCCccCCcHHHH---HHhhccCCCceeeeE-eCCC---CC-EeeEecCCCceE
Confidence 445788899999996421110 0 00000000 000112456788887 9998 55 788888999999
Q ss_pred EEEccCCCCceEeeecCCcceEEEEEeCCCCeEEEecCCCcEEEEecC
Q 021291 235 VWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLD 282 (314)
Q Consensus 235 vwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~iw~~~ 282 (314)
+-|...+.+.+..+..-.-+..++.|-.+. .++.++.|..-.++...
T Consensus 232 ~~da~~p~~~v~~~~~~~lP~ls~~~ise~-~vv~ag~~c~P~lf~~~ 278 (361)
T KOG1523|consen 232 FVDAAGPSERVQSVATAQLPLLSVSWISEN-SVVAAGYDCGPVLFVTD 278 (361)
T ss_pred EeecCCCchhccchhhccCCceeeEeecCC-ceeecCCCCCceEEEec
Confidence 999887554555555445788888884443 35666677444444443
No 216
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.56 E-value=7.9e-14 Score=113.16 Aligned_cols=190 Identities=11% Similarity=0.129 Sum_probs=126.6
Q ss_pred CCceEEecCCCCceeEEEEccCCCEEEEecCCCeEEEEeCCCCeEEEEEeccCCcccEEEEEEcccCCCCeEEEeecCCe
Q 021291 8 PDPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGT 87 (314)
Q Consensus 8 ~~~~~~l~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~ 87 (314)
++.-+...+|.+.|.|-.|+|||.-|+|++.||.|++|. ++|-...++.... .+|.|++|.| +++.++-+-. +.
T Consensus 94 ~rVE~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWS-rsGMLRStl~Q~~--~~v~c~~W~p--~S~~vl~c~g-~h 167 (737)
T KOG1524|consen 94 ARVERSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWS-RSGMLRSTVVQNE--ESIRCARWAP--NSNSIVFCQG-GH 167 (737)
T ss_pred chhhhhhhhhhhhhhhcccCCCCceeeeecCCceEEEEe-ccchHHHHHhhcC--ceeEEEEECC--CCCceEEecC-Ce
Confidence 345566778999999999999999999999999999998 5666555554455 5599999999 6555554332 34
Q ss_pred EEEEeCCCCCCCCCCeeeeecceeeEEEeeeeeccccccccCCCCcceeeccCCceeeecCCCCCCceeccCCCceEEEe
Q 021291 88 VKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVA 167 (314)
Q Consensus 88 v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (314)
+.|=-+..... .+..+.+...... ++|++..+ + +++
T Consensus 168 ~~IKpL~~n~k----~i~WkAHDGiiL~--------------------------------------~~W~~~s~-l-I~s 203 (737)
T KOG1524|consen 168 ISIKPLAANSK----IIRWRAHDGLVLS--------------------------------------LSWSTQSN-I-IAS 203 (737)
T ss_pred EEEeecccccc----eeEEeccCcEEEE--------------------------------------eecCcccc-c-eee
Confidence 44433332211 2222222221111 45777765 3 347
Q ss_pred ecCcCeEEEEecCCCceeeeecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEeecCCcEEEEEccCCCCceEe
Q 021291 168 GEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTA 247 (314)
Q Consensus 168 g~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~~~ 247 (314)
|++|-..++||... ..+..-. .| .-++++++ |.|+ . .++.++.+ ++++
T Consensus 204 gGED~kfKvWD~~G-~~Lf~S~--------~~----ey~ITSva-~npd-~----~~~v~S~n-t~R~------------ 251 (737)
T KOG1524|consen 204 GGEDFRFKIWDAQG-ANLFTSA--------AE----EYAITSVA-FNPE-K----DYLLWSYN-TARF------------ 251 (737)
T ss_pred cCCceeEEeecccC-cccccCC--------hh----ccceeeee-eccc-c----ceeeeeee-eeee------------
Confidence 88899999999764 4443322 33 44788998 9998 2 45555432 3331
Q ss_pred eecCCcceEEEEEeCCCCeEEEecCCCcEEEE
Q 021291 248 MKVHLEPVLCLSIDESCNGGISGGADQKIVLY 279 (314)
Q Consensus 248 ~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~iw 279 (314)
-+...+.|..++|++||..++.|...|.+.+=
T Consensus 252 ~~p~~GSifnlsWS~DGTQ~a~gt~~G~v~~A 283 (737)
T KOG1524|consen 252 SSPRVGSIFNLSWSADGTQATCGTSTGQLIVA 283 (737)
T ss_pred cCCCccceEEEEEcCCCceeeccccCceEEEe
Confidence 11235789999999999999999999987653
No 217
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.54 E-value=1.5e-11 Score=101.36 Aligned_cols=200 Identities=17% Similarity=0.113 Sum_probs=130.7
Q ss_pred EEEecCCCeEEEEeCCCCeEEEEEeccCCcccEEEEEEcccCCCCeEEEeecCCeEEEEeCCCCCCCCCCeeeeecceee
Q 021291 33 LFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYH 112 (314)
Q Consensus 33 l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~ 112 (314)
+++-..+|.|.|.|..+.+.+..+..... .-..+.|+| |++++++++.||.|.++|+.+.+.+. +++.....
T Consensus 9 ~V~~~~~~~v~viD~~t~~~~~~i~~~~~--~h~~~~~s~--Dgr~~yv~~rdg~vsviD~~~~~~v~----~i~~G~~~ 80 (369)
T PF02239_consen 9 YVVERGSGSVAVIDGATNKVVARIPTGGA--PHAGLKFSP--DGRYLYVANRDGTVSVIDLATGKVVA----TIKVGGNP 80 (369)
T ss_dssp EEEEGGGTEEEEEETTT-SEEEEEE-STT--EEEEEE-TT---SSEEEEEETTSEEEEEETTSSSEEE----EEE-SSEE
T ss_pred EEEecCCCEEEEEECCCCeEEEEEcCCCC--ceeEEEecC--CCCEEEEEcCCCeEEEEECCcccEEE----EEecCCCc
Confidence 34566789999999999999999986542 245678999 99999999999999999999987644 34333322
Q ss_pred EEEeeeeeccccccccCCCCcceeeccCCceeeecCCCCCCceeccCCCceEEEeecCcCeEEEEecCCCceeeeecccc
Q 021291 113 FCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNS 192 (314)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~vwd~~~~~~~~~~~~~~ 192 (314)
.. ++++++|+++++ +...++.+.++|.++.+.+..++...
T Consensus 81 ~~---------------------------------------i~~s~DG~~~~v-~n~~~~~v~v~D~~tle~v~~I~~~~ 120 (369)
T PF02239_consen 81 RG---------------------------------------IAVSPDGKYVYV-ANYEPGTVSVIDAETLEPVKTIPTGG 120 (369)
T ss_dssp EE---------------------------------------EEE--TTTEEEE-EEEETTEEEEEETTT--EEEEEE--E
T ss_pred ce---------------------------------------EEEcCCCCEEEE-EecCCCceeEeccccccceeeccccc
Confidence 22 668999987765 55568999999999999988876311
Q ss_pred cCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEeecCCcEEEEEccCCCCceEeeecCCcceEEEEEeCCCCeEEE-ec
Q 021291 193 CGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGIS-GG 271 (314)
Q Consensus 193 ~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s-~s 271 (314)
. ........+.++. .+|. +..++++--+.+.|.+.|......+...............|+|++++++. ..
T Consensus 121 ~-----~~~~~~~Rv~aIv-~s~~---~~~fVv~lkd~~~I~vVdy~d~~~~~~~~i~~g~~~~D~~~dpdgry~~va~~ 191 (369)
T PF02239_consen 121 M-----PVDGPESRVAAIV-ASPG---RPEFVVNLKDTGEIWVVDYSDPKNLKVTTIKVGRFPHDGGFDPDGRYFLVAAN 191 (369)
T ss_dssp E------TTTS---EEEEE-E-SS---SSEEEEEETTTTEEEEEETTTSSCEEEEEEE--TTEEEEEE-TTSSEEEEEEG
T ss_pred c-----cccccCCCceeEE-ecCC---CCEEEEEEccCCeEEEEEeccccccceeeecccccccccccCcccceeeeccc
Confidence 0 0001233455565 5665 33256666666889888987743333333334567788999999998755 45
Q ss_pred CCCcEEEEecCCCeeeEe
Q 021291 272 ADQKIVLYNLDHSTYVLF 289 (314)
Q Consensus 272 ~dg~i~iw~~~~~~~~~~ 289 (314)
.++.|-++|..+++.+..
T Consensus 192 ~sn~i~viD~~~~k~v~~ 209 (369)
T PF02239_consen 192 GSNKIAVIDTKTGKLVAL 209 (369)
T ss_dssp GGTEEEEEETTTTEEEEE
T ss_pred ccceeEEEeeccceEEEE
Confidence 577999999999887764
No 218
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.53 E-value=1.8e-12 Score=110.09 Aligned_cols=231 Identities=12% Similarity=0.071 Sum_probs=143.4
Q ss_pred CCeEEEEeCCCC-eEEEEEeccCCcccEEEEEEcccCCCCeEEEeecCCeEEEEeCCCCCCCCCCeeeeecc----eeeE
Q 021291 39 GGELRIWDTVQH-RTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGGLSSNPSLTIKTN----SYHF 113 (314)
Q Consensus 39 dg~v~iwd~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~----~~~~ 113 (314)
++.+.||+++.. .....+. .. ..|.++.|+|. +.++++.|..+|.|.+||++.+.......+..... +...
T Consensus 221 ~~~~~vW~~~~p~~Pe~~~~-~~--s~v~~~~f~p~-~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~ 296 (555)
T KOG1587|consen 221 DGVLLVWSLKNPNTPELVLE-SP--SEVTCLKFCPF-DPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTA 296 (555)
T ss_pred CceEEEEecCCCCCceEEEe-cC--CceeEEEeccC-CcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEE
Confidence 357999999876 3333333 23 55999999997 66889999999999999999876521111122211 2222
Q ss_pred EEeeeeecc-ccccccCCCCcceeeccCCceeee----cCCCC---------CC--ceeccCCCceEEEeecCcCeEEEE
Q 021291 114 CKLSLVKEP-YANAKQANEPKDCYEREVGETVDT----DSLCD---------SK--DDVPAEGPKYMAVAGEQLSEVEIW 177 (314)
Q Consensus 114 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~---------~~--~~~~~~~~~~~~~~g~~d~~i~vw 177 (314)
+.+.....+ .......++....|+++....... ....| .. ++|.+...+.++ .|+++|.|.-=
T Consensus 297 vvW~~~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~Fi-VGTe~G~v~~~ 375 (555)
T KOG1587|consen 297 VVWLQNEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFI-VGTEEGKVYKG 375 (555)
T ss_pred EEEeccCCCCceEEEecCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCceEE-EEcCCcEEEEE
Confidence 222222222 122333456666666544322111 11111 11 778887777776 48888988773
Q ss_pred ecCCCcee--eeecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEeecCCcEEEEEccCCCCceEeeecCCcce
Q 021291 178 DLNTAERC--TRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPV 255 (314)
Q Consensus 178 d~~~~~~~--~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~h~~~v 255 (314)
+....+.. ..++.. .+.....+.+.++. ++|-.. ..+++++ |.+++||.......|+..+..+...|
T Consensus 376 ~r~g~~~~~~~~~~~~------~~~~~h~g~v~~v~-~nPF~~---k~fls~g-DW~vriWs~~~~~~Pl~~~~~~~~~v 444 (555)
T KOG1587|consen 376 CRKGYTPAPEVSYKGH------STFITHIGPVYAVS-RNPFYP---KNFLSVG-DWTVRIWSEDVIASPLLSLDSSPDYV 444 (555)
T ss_pred eccCCccccccccccc------ccccccCcceEeee-cCCCcc---ceeeeec-cceeEeccccCCCCcchhhhhcccee
Confidence 33222211 112210 11122456788887 888743 2555555 99999999984388999999999999
Q ss_pred EEEEEeCCCC-eEEEecCCCcEEEEecCCCe
Q 021291 256 LCLSIDESCN-GGISGGADQKIVLYNLDHST 285 (314)
Q Consensus 256 ~~~~~~~~~~-~l~s~s~dg~i~iw~~~~~~ 285 (314)
++++|+|... .++++..||.|.+||+....
T Consensus 445 ~~vaWSptrpavF~~~d~~G~l~iWDLl~~~ 475 (555)
T KOG1587|consen 445 TDVAWSPTRPAVFATVDGDGNLDIWDLLQDD 475 (555)
T ss_pred eeeEEcCcCceEEEEEcCCCceehhhhhccc
Confidence 9999998654 56888889999999997543
No 219
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.50 E-value=4e-14 Score=112.75 Aligned_cols=190 Identities=16% Similarity=0.223 Sum_probs=140.0
Q ss_pred CceeEEEEccCCCEEEEecCCCeEEEEeCCCCeEEEEEeccCCcccEEEEEEcccCCCCeEEEeecCCeEEEEeCCCCCC
Q 021291 19 ASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGGL 98 (314)
Q Consensus 19 ~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~ 98 (314)
..|.++.|-.+.+++|++- ..-+.||| ..|..+..++.+ ..|..+.|.| ..-+|++++..|.++.-|+.+|++
T Consensus 171 Etv~Dv~~LHneq~~AVAQ-K~y~yvYD-~~GtElHClk~~---~~v~rLeFLP--yHfLL~~~~~~G~L~Y~DVS~Gkl 243 (545)
T KOG1272|consen 171 ETVRDVTFLHNEQFFAVAQ-KKYVYVYD-NNGTELHCLKRH---IRVARLEFLP--YHFLLVAASEAGFLKYQDVSTGKL 243 (545)
T ss_pred hhhhhhhhhcchHHHHhhh-hceEEEec-CCCcEEeehhhc---Cchhhhcccc--hhheeeecccCCceEEEeechhhh
Confidence 4567777777777777665 45799999 668888888877 5589999999 767788999999999999999987
Q ss_pred CCCCeeeeecceeeEEEeeeeeccccccccCCCCcceeeccCCceeeecCCCCCCceeccCCCceEEEeecCcCeEEEEe
Q 021291 99 SSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQLSEVEIWD 178 (314)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~vwd 178 (314)
+. .+......... ++-+|-+. ++-.|...|+|.+|.
T Consensus 244 Va----~~~t~~G~~~v--------------------------------------m~qNP~Na--Vih~GhsnGtVSlWS 279 (545)
T KOG1272|consen 244 VA----SIRTGAGRTDV--------------------------------------MKQNPYNA--VIHLGHSNGTVSLWS 279 (545)
T ss_pred hH----HHHccCCccch--------------------------------------hhcCCccc--eEEEcCCCceEEecC
Confidence 65 22222221111 22334433 334577789999999
Q ss_pred cCCCceeeeecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEeecCCcEEEEEccCCCCceEeeecCCcceEEE
Q 021291 179 LNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPVLCL 258 (314)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~~ 258 (314)
....+++..+. .| .+.+.+++ +.|. |+ |+++.+.|..++|||+++.. .+.++.. .-+...+
T Consensus 280 P~skePLvKiL--------cH----~g~V~siA-v~~~---G~-YMaTtG~Dr~~kIWDlR~~~-ql~t~~t-p~~a~~l 340 (545)
T KOG1272|consen 280 PNSKEPLVKIL--------CH----RGPVSSIA-VDRG---GR-YMATTGLDRKVKIWDLRNFY-QLHTYRT-PHPASNL 340 (545)
T ss_pred CCCcchHHHHH--------hc----CCCcceEE-ECCC---Cc-EEeecccccceeEeeecccc-ccceeec-CCCcccc
Confidence 99999888777 56 55777787 9987 66 99999999999999999844 3334333 4567889
Q ss_pred EEeCCCCeEEEecCCCcEEEEe
Q 021291 259 SIDESCNGGISGGADQKIVLYN 280 (314)
Q Consensus 259 ~~~~~~~~l~s~s~dg~i~iw~ 280 (314)
++|..|. +..|....|.||.
T Consensus 341 s~Sqkgl--LA~~~G~~v~iw~ 360 (545)
T KOG1272|consen 341 SLSQKGL--LALSYGDHVQIWK 360 (545)
T ss_pred ccccccc--eeeecCCeeeeeh
Confidence 9998875 3444555799995
No 220
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.50 E-value=1.2e-12 Score=103.21 Aligned_cols=181 Identities=16% Similarity=0.219 Sum_probs=117.7
Q ss_pred EEEEEcccCCCCeEEEeecCCeEEEEeCCCCCCCCCCeeeeecceeeEEEeeeeeccccccccCCCCcceeeccCCceee
Q 021291 66 VSVATGPSIGLNKVISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVD 145 (314)
Q Consensus 66 ~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (314)
.+++|++ ++..+++++.||++|+|+..+...+. ....+.....
T Consensus 148 k~vaf~~--~gs~latgg~dg~lRv~~~Ps~~t~l----~e~~~~~eV~------------------------------- 190 (398)
T KOG0771|consen 148 KVVAFNG--DGSKLATGGTDGTLRVWEWPSMLTIL----EEIAHHAEVK------------------------------- 190 (398)
T ss_pred eEEEEcC--CCCEeeeccccceEEEEecCcchhhh----hhHhhcCccc-------------------------------
Confidence 6889999 99999999999999999976654322 1111111000
Q ss_pred ecCCCCCCceeccCCCceEEEeecCcCeEEEEecCCCceeeeecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEE
Q 021291 146 TDSLCDSKDDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVL 225 (314)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~ 225 (314)
++.|+|||+.++ ..|. | ..+||+.+++..+..... .. ..-..-.+ .|+.++.....+++
T Consensus 191 -------DL~FS~dgk~la-sig~-d-~~~VW~~~~g~~~a~~t~--------~~--k~~~~~~c-RF~~d~~~~~l~la 249 (398)
T KOG0771|consen 191 -------DLDFSPDGKFLA-SIGA-D-SARVWSVNTGAALARKTP--------FS--KDEMFSSC-RFSVDNAQETLRLA 249 (398)
T ss_pred -------cceeCCCCcEEE-EecC-C-ceEEEEeccCchhhhcCC--------cc--cchhhhhc-eecccCCCceEEEE
Confidence 067999997544 3444 5 899999999977666552 10 11122333 38877432222333
Q ss_pred E-eecCCcEEEEEccCCCC----ceEeeecCCcceEEEEEeCCCCeEEEecCCCcEEEEecCCCeeeEe--------eee
Q 021291 226 A-GYEDGSILVWDIRNPGI----PLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTYVLF--------GIG 292 (314)
Q Consensus 226 ~-g~~dg~i~vwd~~~~~~----~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~iw~~~~~~~~~~--------~~~ 292 (314)
+ -..-+.|+.||+..... +..+...-...|++++.+.+|++++.|+.||.|-|++..+-+.++. +.+
T Consensus 250 a~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGkf~AlGT~dGsVai~~~~~lq~~~~vk~aH~~~VT~ 329 (398)
T KOG0771|consen 250 ASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDGKFLALGTMDGSVAIYDAKSLQRLQYVKEAHLGFVTG 329 (398)
T ss_pred EecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcCCCcEEEEeccCCcEEEEEeceeeeeEeehhhheeeeee
Confidence 3 33345677777653211 2222222345799999999999999999999999999998887764 566
Q ss_pred eeecCCCceece
Q 021291 293 FVCDQEGNKFGT 304 (314)
Q Consensus 293 ~~~~~~~~~~~~ 304 (314)
+.+.|+....++
T Consensus 330 ltF~Pdsr~~~s 341 (398)
T KOG0771|consen 330 LTFSPDSRYLAS 341 (398)
T ss_pred EEEcCCcCcccc
Confidence 677777765544
No 221
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.49 E-value=2e-11 Score=93.12 Aligned_cols=218 Identities=13% Similarity=0.196 Sum_probs=137.1
Q ss_pred ceeEEEEccCCCEEEEecCCCeEEEEeCCCCeEEEEEeccCCcccEEEEEEcccCCCCeEE-EeecC------CeEEEEe
Q 021291 20 SVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVI-SQGRD------GTVKCWD 92 (314)
Q Consensus 20 ~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~-s~~~d------g~v~iwd 92 (314)
....++|+.|...++.|..+| .+||+.+.-+.....+.+...-.+..|-|-. ++|+ .|+.+ ..|.|||
T Consensus 7 ~~lsvs~NQD~ScFava~~~G-friyn~~P~ke~~~r~~~~~G~~~veMLfR~----N~laLVGGg~~pky~pNkviIWD 81 (346)
T KOG2111|consen 7 KTLSVSFNQDHSCFAVATDTG-FRIYNCDPFKESASRQFIDGGFKIVEMLFRS----NYLALVGGGSRPKYPPNKVIIWD 81 (346)
T ss_pred ceeEEEEccCCceEEEEecCc-eEEEecCchhhhhhhccccCchhhhhHhhhh----ceEEEecCCCCCCCCCceEEEEe
Confidence 344599999999999998888 8999988644433332222212244455543 5555 34333 4799999
Q ss_pred CCCCCCCCCCeeeeecceeeEEEeeeeeccccccccCCCCcceeeccCCceeeecCCCCCCceeccCCCceEEEeecCcC
Q 021291 93 IENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQLS 172 (314)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~ 172 (314)
=....++. ++.-...... +.+.+ ++++++. ++
T Consensus 82 D~k~~~i~----el~f~~~I~~---------------------------------------V~l~r--~riVvvl---~~ 113 (346)
T KOG2111|consen 82 DLKERCII----ELSFNSEIKA---------------------------------------VKLRR--DRIVVVL---EN 113 (346)
T ss_pred cccCcEEE----EEEeccceee---------------------------------------EEEcC--CeEEEEe---cC
Confidence 44443322 2221111000 11223 4455433 57
Q ss_pred eEEEEecC-CCceeeeecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEeecCCcEEEEEccCCCC-ceEeeec
Q 021291 173 EVEIWDLN-TAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGI-PLTAMKV 250 (314)
Q Consensus 173 ~i~vwd~~-~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~-~~~~~~~ 250 (314)
.|+||... +.+.+..+.. ... .++. ++..|... ...+..-|..-|.|.|-|+..... +-..+.+
T Consensus 114 ~I~VytF~~n~k~l~~~et--------~~N-PkGl----C~~~~~~~-k~~LafPg~k~GqvQi~dL~~~~~~~p~~I~A 179 (346)
T KOG2111|consen 114 KIYVYTFPDNPKLLHVIET--------RSN-PKGL----CSLCPTSN-KSLLAFPGFKTGQVQIVDLASTKPNAPSIINA 179 (346)
T ss_pred eEEEEEcCCChhheeeeec--------ccC-CCce----EeecCCCC-ceEEEcCCCccceEEEEEhhhcCcCCceEEEc
Confidence 89999987 5566666652 111 2232 23666532 332333466779999999986222 2477889
Q ss_pred CCcceEEEEEeCCCCeEEEecCCCc-EEEEecCCCeeeEe---------eeeeeecCCCceece
Q 021291 251 HLEPVLCLSIDESCNGGISGGADQK-IVLYNLDHSTYVLF---------GIGFVCDQEGNKFGT 304 (314)
Q Consensus 251 h~~~v~~~~~~~~~~~l~s~s~dg~-i~iw~~~~~~~~~~---------~~~~~~~~~~~~~~~ 304 (314)
|.+.|.+++.+.+|..+||+|..|+ |||||..+++.++. +..++++|+...++.
T Consensus 180 H~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG~d~A~iy~iaFSp~~s~Lav 243 (346)
T KOG2111|consen 180 HDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELRRGVDRADIYCIAFSPNSSWLAV 243 (346)
T ss_pred ccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeeecCCchheEEEEEeCCCccEEEE
Confidence 9999999999999999999999996 89999999998874 344566677765543
No 222
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.48 E-value=1.2e-11 Score=95.97 Aligned_cols=201 Identities=14% Similarity=0.182 Sum_probs=126.4
Q ss_pred CCceeEEEEcc-CCCEEEEecCCCeEEEEeCCCC----e--------EEEEEeccCCcccEEEEEEcccCCCCeEEEeec
Q 021291 18 RASVTDVCFHQ-TKPILFAGTTGGELRIWDTVQH----R--------TVSSSWVHSAAHGIVSVATGPSIGLNKVISQGR 84 (314)
Q Consensus 18 ~~~v~~~~~~~-~~~~l~s~~~dg~v~iwd~~~~----~--------~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~ 84 (314)
...|+|++|-| .+..|+.|+..| |.+|..... + +...++... ..+|++|.|.+ ||..+++++.
T Consensus 140 QrnvtclawRPlsaselavgCr~g-IciW~~s~tln~~r~~~~~s~~~~qvl~~pg-h~pVtsmqwn~--dgt~l~tAS~ 215 (445)
T KOG2139|consen 140 QRNVTCLAWRPLSASELAVGCRAG-ICIWSDSRTLNANRNIRMMSTHHLQVLQDPG-HNPVTSMQWNE--DGTILVTASF 215 (445)
T ss_pred hcceeEEEeccCCcceeeeeecce-eEEEEcCcccccccccccccccchhheeCCC-CceeeEEEEcC--CCCEEeeccc
Confidence 56799999999 567888888876 899986531 1 112222222 26799999999 9999998876
Q ss_pred -CCeEEEEeCCCCCCCCCCeeeeecceeeEEEeeeeeccccccccCCCCcceeeccCCceeeecCCCCCCceeccCCCce
Q 021291 85 -DGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKY 163 (314)
Q Consensus 85 -dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (314)
|..|.|||+.++..+. +..... ..... +.|||||..+
T Consensus 216 gsssi~iWdpdtg~~~p--L~~~gl-gg~sl---------------------------------------LkwSPdgd~l 253 (445)
T KOG2139|consen 216 GSSSIMIWDPDTGQKIP--LIPKGL-GGFSL---------------------------------------LKWSPDGDVL 253 (445)
T ss_pred CcceEEEEcCCCCCccc--ccccCC-Cceee---------------------------------------EEEcCCCCEE
Confidence 6689999999987643 221111 11101 5699999988
Q ss_pred EEEeecCcCeEEEEecC-CCceeeeecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEeecCCcEEEEEccCCC
Q 021291 164 MAVAGEQLSEVEIWDLN-TAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPG 242 (314)
Q Consensus 164 ~~~~g~~d~~i~vwd~~-~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~ 242 (314)
++++ .|+..++|+.. +.....-.. ..+.+.... |+|+ |+++|++.+..- ++|.+.-.+
T Consensus 254 faAt--~davfrlw~e~q~wt~erw~l-------------gsgrvqtac-Wspc---GsfLLf~~sgsp--~lysl~f~~ 312 (445)
T KOG2139|consen 254 FAAT--CDAVFRLWQENQSWTKERWIL-------------GSGRVQTAC-WSPC---GSFLLFACSGSP--RLYSLTFDG 312 (445)
T ss_pred EEec--ccceeeeehhcccceecceec-------------cCCceeeee-ecCC---CCEEEEEEcCCc--eEEEEeecC
Confidence 8644 47999999544 333322222 123455554 9998 665666666544 444443212
Q ss_pred Cc--------------eEeee-----c----CCcceEEEEEeCCCCeEEEecCCC--------cEEEEecCCCe
Q 021291 243 IP--------------LTAMK-----V----HLEPVLCLSIDESCNGGISGGADQ--------KIVLYNLDHST 285 (314)
Q Consensus 243 ~~--------------~~~~~-----~----h~~~v~~~~~~~~~~~l~s~s~dg--------~i~iw~~~~~~ 285 (314)
++ +..+. . -.+++.+++|+|.|.+|++.=..+ .|.+||.+..-
T Consensus 313 ~~~~~~~~~~~k~~lliaDL~e~ti~ag~~l~cgeaq~lawDpsGeyLav~fKg~~~v~~~k~~i~~fdtr~sp 386 (445)
T KOG2139|consen 313 EDSVFLRPQSIKRVLLIADLQEVTICAGQRLCCGEAQCLAWDPSGEYLAVIFKGQSFVLLCKLHISRFDTRKSP 386 (445)
T ss_pred CCccccCcccceeeeeeccchhhhhhcCcccccCccceeeECCCCCEEEEEEcCCchhhhhhhhhhhhcccccC
Confidence 11 01111 1 135788999999999998764332 36667766543
No 223
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.48 E-value=8.1e-13 Score=98.13 Aligned_cols=159 Identities=18% Similarity=0.277 Sum_probs=113.2
Q ss_pred CCCceeEEEEcc-CCC--EEEEecCCCeEEEEeCCCCeEEE----------EEeccCCcccEEEEEEcccCCCCeEEEee
Q 021291 17 HRASVTDVCFHQ-TKP--ILFAGTTGGELRIWDTVQHRTVS----------SSWVHSAAHGIVSVATGPSIGLNKVISQG 83 (314)
Q Consensus 17 h~~~v~~~~~~~-~~~--~l~s~~~dg~v~iwd~~~~~~~~----------~~~~~~~~~~v~~~~~~~~~~~~~l~s~~ 83 (314)
-.+.+.|..+.. ++. +|+.|-.+|.|.+||+.++..+. ....|. .+|.++.|.+ .-+.=++++
T Consensus 149 Klgsvmc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~--qpvlsldyas--~~~rGisgg 224 (323)
T KOG0322|consen 149 KLGSVMCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHK--QPVLSLDYAS--SCDRGISGG 224 (323)
T ss_pred ccCceeeeeccccccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhcc--Ccceeeeech--hhcCCcCCC
Confidence 346677777544 333 56678889999999999874332 333566 4599999988 556667888
Q ss_pred cCCeEEEEeCCCC--CCCCCCeeeeecceeeEEEeeeeeccccccccCCCCcceeeccCCceeeecCCCCCCceeccCCC
Q 021291 84 RDGTVKCWDIENG--GLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGP 161 (314)
Q Consensus 84 ~dg~v~iwd~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (314)
.+..+..|.++.. .+......+++. .+..++.+-||++
T Consensus 225 a~dkl~~~Sl~~s~gslq~~~e~~lkn----------------------------------------pGv~gvrIRpD~K 264 (323)
T KOG0322|consen 225 ADDKLVMYSLNHSTGSLQIRKEITLKN----------------------------------------PGVSGVRIRPDGK 264 (323)
T ss_pred ccccceeeeeccccCcccccceEEecC----------------------------------------CCccceEEccCCc
Confidence 8888999988643 221111111111 1112255678875
Q ss_pred ceEEEeecCcCeEEEEecCCCceeeeecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEeecCCcEEEEEc
Q 021291 162 KYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDI 238 (314)
Q Consensus 162 ~~~~~~g~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~ 238 (314)
++ ++++.|+.|+||..++..++..++ -| .+.+.+++ |+|+.+ ++++++.|+.|.+|++
T Consensus 265 -Il-ATAGWD~RiRVyswrtl~pLAVLk--------yH----sagvn~vA-fspd~~----lmAaaskD~rISLWkL 322 (323)
T KOG0322|consen 265 -IL-ATAGWDHRIRVYSWRTLNPLAVLK--------YH----SAGVNAVA-FSPDCE----LMAAASKDARISLWKL 322 (323)
T ss_pred -EE-eecccCCcEEEEEeccCCchhhhh--------hh----hcceeEEE-eCCCCc----hhhhccCCceEEeeec
Confidence 44 477889999999999999999998 56 45788898 999843 8999999999999986
No 224
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.48 E-value=1.9e-11 Score=94.96 Aligned_cols=197 Identities=15% Similarity=0.128 Sum_probs=127.1
Q ss_pred CCceeEEEEccCCCEEEEecCCCeEEEEeCCCCeEEEEEeccCCcccEEEEEEcccCCCCeEEEeecCCeEEEEeCCCCC
Q 021291 18 RASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGG 97 (314)
Q Consensus 18 ~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~ 97 (314)
+..+..++|++.-..+|++..|-.|++||-.. ++...++.... ..|+|++|-|. .+..|+.|+.. -|.+|.....-
T Consensus 98 ~~dlr~~aWhqH~~~fava~nddvVriy~kss-t~pt~Lks~sQ-rnvtclawRPl-saselavgCr~-gIciW~~s~tl 173 (445)
T KOG2139|consen 98 EIDLRGVAWHQHIIAFAVATNDDVVRIYDKSS-TCPTKLKSVSQ-RNVTCLAWRPL-SASELAVGCRA-GICIWSDSRTL 173 (445)
T ss_pred hcceeeEeechhhhhhhhhccCcEEEEeccCC-CCCceecchhh-cceeEEEeccC-Ccceeeeeecc-eeEEEEcCccc
Confidence 34577899999766789999999999999654 66666654332 56999999994 34567777765 58999876432
Q ss_pred CCCCCeeeeecceeeEEEeeeeeccccccccCCCCcceeeccCCceeeecCCCCCC---ceeccCCCceEEEeecCcCeE
Q 021291 98 LSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSK---DDVPAEGPKYMAVAGEQLSEV 174 (314)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~g~~d~~i 174 (314)
....+. ....... ......++|.. +.|.+||..++ .++-.|..|
T Consensus 174 n~~r~~---~~~s~~~-----------------------------~qvl~~pgh~pVtsmqwn~dgt~l~-tAS~gsssi 220 (445)
T KOG2139|consen 174 NANRNI---RMMSTHH-----------------------------LQVLQDPGHNPVTSMQWNEDGTILV-TASFGSSSI 220 (445)
T ss_pred cccccc---ccccccc-----------------------------hhheeCCCCceeeEEEEcCCCCEEe-ecccCcceE
Confidence 111100 0000000 00011122222 77999987655 345557899
Q ss_pred EEEecCCCceeeeecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEeecCCcEEEEEccCCCCceEeeecCCcc
Q 021291 175 EIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHLEP 254 (314)
Q Consensus 175 ~vwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~h~~~ 254 (314)
.|||..++..+.-... ..+.+.-+. |+|| |. +|+++.-|+..++|+.........-..+ .+.
T Consensus 221 ~iWdpdtg~~~pL~~~------------glgg~slLk-wSPd---gd-~lfaAt~davfrlw~e~q~wt~erw~lg-sgr 282 (445)
T KOG2139|consen 221 MIWDPDTGQKIPLIPK------------GLGGFSLLK-WSPD---GD-VLFAATCDAVFRLWQENQSWTKERWILG-SGR 282 (445)
T ss_pred EEEcCCCCCccccccc------------CCCceeeEE-EcCC---CC-EEEEecccceeeeehhcccceecceecc-CCc
Confidence 9999998876543321 123444555 9999 55 8999999999999966542333333333 459
Q ss_pred eEEEEEeCCCCeEEE
Q 021291 255 VLCLSIDESCNGGIS 269 (314)
Q Consensus 255 v~~~~~~~~~~~l~s 269 (314)
|....|+|+|.+|.-
T Consensus 283 vqtacWspcGsfLLf 297 (445)
T KOG2139|consen 283 VQTACWSPCGSFLLF 297 (445)
T ss_pred eeeeeecCCCCEEEE
Confidence 999999999987643
No 225
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.47 E-value=2.1e-11 Score=103.34 Aligned_cols=198 Identities=14% Similarity=0.080 Sum_probs=116.4
Q ss_pred CeEEEEeCCCCeEEEEEeccCCcccEEEEEEcccCCCCeEEEeecC---CeEEEEeCCCCCCCCCCeeeeecceeeEEEe
Q 021291 40 GELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRD---GTVKCWDIENGGLSSNPSLTIKTNSYHFCKL 116 (314)
Q Consensus 40 g~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d---g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 116 (314)
..|.++|.+ +.....+..+. ..+.+.+|+| |++.|+..+.+ ..|.+||+.+++... +...... ...
T Consensus 176 ~~L~~~D~d-G~~~~~l~~~~--~~v~~p~wSP--DG~~la~~s~~~~~~~I~~~dl~~g~~~~--l~~~~g~--~~~-- 244 (427)
T PRK02889 176 YQLQISDAD-GQNAQSALSSP--EPIISPAWSP--DGTKLAYVSFESKKPVVYVHDLATGRRRV--VANFKGS--NSA-- 244 (427)
T ss_pred cEEEEECCC-CCCceEeccCC--CCcccceEcC--CCCEEEEEEccCCCcEEEEEECCCCCEEE--eecCCCC--ccc--
Confidence 468888864 44444454555 4489999999 99998876643 359999998875321 1111100 000
Q ss_pred eeeeccccccccCCCCcceeeccCCceeeecCCCCCCceeccCCCceEEEeecCcCeEEEE--ecCCCceeeeecccccC
Q 021291 117 SLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQLSEVEIW--DLNTAERCTRLHQNSCG 194 (314)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~vw--d~~~~~~~~~~~~~~~~ 194 (314)
.+|+|+|+.+++ +.+.++...|| |+..+. ...+.
T Consensus 245 -------------------------------------~~~SPDG~~la~-~~~~~g~~~Iy~~d~~~~~-~~~lt----- 280 (427)
T PRK02889 245 -------------------------------------PAWSPDGRTLAV-ALSRDGNSQIYTVNADGSG-LRRLT----- 280 (427)
T ss_pred -------------------------------------eEECCCCCEEEE-EEccCCCceEEEEECCCCC-cEECC-----
Confidence 469999987765 44456665555 454443 33343
Q ss_pred CCCCcCCCCCceeeeEEEecCCCCCCceEEEEeecCCcEEEEEccCCCCceEeeecCCcceEEEEEeCCCCeEEEecCCC
Q 021291 195 GSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQ 274 (314)
Q Consensus 195 ~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg 274 (314)
.+ .+...... |+|| |+.+++++..+|...+|.+...+.....+..+........|+|+|++|+..+.++
T Consensus 281 ---~~----~~~~~~~~-wSpD---G~~l~f~s~~~g~~~Iy~~~~~~g~~~~lt~~g~~~~~~~~SpDG~~Ia~~s~~~ 349 (427)
T PRK02889 281 ---QS----SGIDTEPF-FSPD---GRSIYFTSDRGGAPQIYRMPASGGAAQRVTFTGSYNTSPRISPDGKLLAYISRVG 349 (427)
T ss_pred ---CC----CCCCcCeE-EcCC---CCEEEEEecCCCCcEEEEEECCCCceEEEecCCCCcCceEECCCCCEEEEEEccC
Confidence 22 11233455 9998 6534444444566677765432223333332333445678999999998776654
Q ss_pred ---cEEEEecCCCeeeEee-----eeeeecCCCceec
Q 021291 275 ---KIVLYNLDHSTYVLFG-----IGFVCDQEGNKFG 303 (314)
Q Consensus 275 ---~i~iw~~~~~~~~~~~-----~~~~~~~~~~~~~ 303 (314)
.|.+||+.+++..... ...+++|+|..+.
T Consensus 350 g~~~I~v~d~~~g~~~~lt~~~~~~~p~~spdg~~l~ 386 (427)
T PRK02889 350 GAFKLYVQDLATGQVTALTDTTRDESPSFAPNGRYIL 386 (427)
T ss_pred CcEEEEEEECCCCCeEEccCCCCccCceECCCCCEEE
Confidence 5999999877644321 2234566766543
No 226
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.46 E-value=6.5e-11 Score=100.32 Aligned_cols=196 Identities=13% Similarity=0.069 Sum_probs=118.5
Q ss_pred CeEEEEeCCCCeEEEEEeccCCcccEEEEEEcccCCCCeEEEeec---CCeEEEEeCCCCCCCCCCeeeeecceeeEEEe
Q 021291 40 GELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGR---DGTVKCWDIENGGLSSNPSLTIKTNSYHFCKL 116 (314)
Q Consensus 40 g~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~---dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 116 (314)
..|.+||.+..... .+..+. ..+...+|+| ||+.|+..+. +..|.+||+.+++... +........
T Consensus 179 ~~l~~~d~dg~~~~-~lt~~~--~~~~~p~wSP--DG~~la~~s~~~g~~~i~i~dl~~G~~~~--l~~~~~~~~----- 246 (429)
T PRK03629 179 YELRVSDYDGYNQF-VVHRSP--QPLMSPAWSP--DGSKLAYVTFESGRSALVIQTLANGAVRQ--VASFPRHNG----- 246 (429)
T ss_pred eeEEEEcCCCCCCE-EeecCC--CceeeeEEcC--CCCEEEEEEecCCCcEEEEEECCCCCeEE--ccCCCCCcC-----
Confidence 37999998754433 333344 4599999999 9998886543 4579999998775321 111111000
Q ss_pred eeeeccccccccCCCCcceeeccCCceeeecCCCCCCceeccCCCceEEEeecCcC--eEEEEecCCCceeeeecccccC
Q 021291 117 SLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQLS--EVEIWDLNTAERCTRLHQNSCG 194 (314)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~--~i~vwd~~~~~~~~~~~~~~~~ 194 (314)
..+|+|||+.++++ .+.++ .|++||+.+++......
T Consensus 247 ------------------------------------~~~~SPDG~~La~~-~~~~g~~~I~~~d~~tg~~~~lt~----- 284 (429)
T PRK03629 247 ------------------------------------APAFSPDGSKLAFA-LSKTGSLNLYVMDLASGQIRQVTD----- 284 (429)
T ss_pred ------------------------------------CeEECCCCCEEEEE-EcCCCCcEEEEEECCCCCEEEccC-----
Confidence 04599999887654 33234 59999998876543222
Q ss_pred CCCCcCCCCCceeeeEEEecCCCCCCceEEEEee-cCCcEEEE--EccCCCCceEeeecCCcceEEEEEeCCCCeEEEec
Q 021291 195 GSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGY-EDGSILVW--DIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGG 271 (314)
Q Consensus 195 ~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~-~dg~i~vw--d~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s 271 (314)
+ ........ |+|+ |+ .|+..+ .++...|| |+.. + ....+..+........|+|+|++|+..+
T Consensus 285 ----~----~~~~~~~~-wSPD---G~-~I~f~s~~~g~~~Iy~~d~~~-g-~~~~lt~~~~~~~~~~~SpDG~~Ia~~~ 349 (429)
T PRK03629 285 ----G----RSNNTEPT-WFPD---SQ-NLAYTSDQAGRPQVYKVNING-G-APQRITWEGSQNQDADVSSDGKFMVMVS 349 (429)
T ss_pred ----C----CCCcCceE-ECCC---CC-EEEEEeCCCCCceEEEEECCC-C-CeEEeecCCCCccCEEECCCCCEEEEEE
Confidence 1 11234455 9998 55 454444 44544555 5554 3 3344544445566789999999987765
Q ss_pred CC---CcEEEEecCCCeeeEe-----eeeeeecCCCceece
Q 021291 272 AD---QKIVLYNLDHSTYVLF-----GIGFVCDQEGNKFGT 304 (314)
Q Consensus 272 ~d---g~i~iw~~~~~~~~~~-----~~~~~~~~~~~~~~~ 304 (314)
.+ ..|.+||+++++.... ....+++|+|..+..
T Consensus 350 ~~~g~~~I~~~dl~~g~~~~Lt~~~~~~~p~~SpDG~~i~~ 390 (429)
T PRK03629 350 SNGGQQHIAKQDLATGGVQVLTDTFLDETPSIAPNGTMVIY 390 (429)
T ss_pred ccCCCceEEEEECCCCCeEEeCCCCCCCCceECCCCCEEEE
Confidence 43 3588899987764322 112346677765443
No 227
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.45 E-value=1e-09 Score=90.53 Aligned_cols=255 Identities=11% Similarity=0.094 Sum_probs=149.1
Q ss_pred CceeEEEEccCCCEEEEecC----CCeEEEEeCCCC--e--EEEEEeccCCcccEEEEEEcccCCCCeEEEeec-CCeEE
Q 021291 19 ASVTDVCFHQTKPILFAGTT----GGELRIWDTVQH--R--TVSSSWVHSAAHGIVSVATGPSIGLNKVISQGR-DGTVK 89 (314)
Q Consensus 19 ~~v~~~~~~~~~~~l~s~~~----dg~v~iwd~~~~--~--~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~-dg~v~ 89 (314)
.....++++|++++|++... +|.|..|++... + .+....... .....++++| ++++|+++.. +|+|.
T Consensus 37 ~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~g--~~p~~i~~~~--~g~~l~vany~~g~v~ 112 (345)
T PF10282_consen 37 ENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSGG--SSPCHIAVDP--DGRFLYVANYGGGSVS 112 (345)
T ss_dssp SSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEESS--SCEEEEEECT--TSSEEEEEETTTTEEE
T ss_pred CCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeeccCC--CCcEEEEEec--CCCEEEEEEccCCeEE
Confidence 34466889999999988766 579999988764 3 333333222 3356899999 9999888864 89999
Q ss_pred EEeCCCCCCCCCCeeee------------ecceeeEEEeeeeeccccccccCCCCcceeeccCCc--e---eeecCCCCC
Q 021291 90 CWDIENGGLSSNPSLTI------------KTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGE--T---VDTDSLCDS 152 (314)
Q Consensus 90 iwd~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~---~~~~~~~~~ 152 (314)
++++.....+....... .....+...+++.+...............+++.... . .........
T Consensus 113 v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~ 192 (345)
T PF10282_consen 113 VFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKVPPGS 192 (345)
T ss_dssp EEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTTTEEEEEEE-TTS-TEEEEEEEECSTTS
T ss_pred EEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecCCCEEEEEEEeCCCceEEEeeccccccCC
Confidence 99998742221111011 011223344444443333333333445555554443 1 111222222
Q ss_pred C---ceeccCCCceEEEeecCcCeEEEEecC--CCc--eeeeecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEE
Q 021291 153 K---DDVPAEGPKYMAVAGEQLSEVEIWDLN--TAE--RCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVL 225 (314)
Q Consensus 153 ~---~~~~~~~~~~~~~~g~~d~~i~vwd~~--~~~--~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~ 225 (314)
. ++|+|+++++++ ....++.|.++++. ++. .+..+.. .+. +. ........+. ++|+ |+++++
T Consensus 193 GPRh~~f~pdg~~~Yv-~~e~s~~v~v~~~~~~~g~~~~~~~~~~---~~~-~~--~~~~~~~~i~-ispd---g~~lyv 261 (345)
T PF10282_consen 193 GPRHLAFSPDGKYAYV-VNELSNTVSVFDYDPSDGSLTEIQTIST---LPE-GF--TGENAPAEIA-ISPD---GRFLYV 261 (345)
T ss_dssp SEEEEEE-TTSSEEEE-EETTTTEEEEEEEETTTTEEEEEEEEES---CET-TS--CSSSSEEEEE-E-TT---SSEEEE
T ss_pred CCcEEEEcCCcCEEEE-ecCCCCcEEEEeecccCCceeEEEEeee---ccc-cc--cccCCceeEE-EecC---CCEEEE
Confidence 2 999999988776 46678999999988 332 2222221 000 11 1112466676 9998 664556
Q ss_pred EeecCCcEEEEEccCC-CC--ceEeeecCCcceEEEEEeCCCCeEEEec-CCCcEEEEecC--CCeeeE
Q 021291 226 AGYEDGSILVWDIRNP-GI--PLTAMKVHLEPVLCLSIDESCNGGISGG-ADQKIVLYNLD--HSTYVL 288 (314)
Q Consensus 226 ~g~~dg~i~vwd~~~~-~~--~~~~~~~h~~~v~~~~~~~~~~~l~s~s-~dg~i~iw~~~--~~~~~~ 288 (314)
+...++.|.+|+++.. +. .+..+.........++++|+|++|+++. .++.|.+|+++ +|....
T Consensus 262 snr~~~sI~vf~~d~~~g~l~~~~~~~~~G~~Pr~~~~s~~g~~l~Va~~~s~~v~vf~~d~~tG~l~~ 330 (345)
T PF10282_consen 262 SNRGSNSISVFDLDPATGTLTLVQTVPTGGKFPRHFAFSPDGRYLYVANQDSNTVSVFDIDPDTGKLTP 330 (345)
T ss_dssp EECTTTEEEEEEECTTTTTEEEEEEEEESSSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEE
T ss_pred EeccCCEEEEEEEecCCCceEEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCeEEEEEEeCCCCcEEE
Confidence 6667788999999532 22 2333443345579999999999987776 56789999774 555443
No 228
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.45 E-value=5.7e-11 Score=101.16 Aligned_cols=196 Identities=14% Similarity=0.055 Sum_probs=120.9
Q ss_pred CeEEEEeCCCCeEEEEEeccCCcccEEEEEEcccCCCCeEEEeec---CCeEEEEeCCCCCCCCCCeeeeecceeeEEEe
Q 021291 40 GELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGR---DGTVKCWDIENGGLSSNPSLTIKTNSYHFCKL 116 (314)
Q Consensus 40 g~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~---dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 116 (314)
..|.++|.+. .....+..+. ..+.+.+|+| ||+.|+..+. +..|.+||+.+++... +....... .
T Consensus 182 ~~l~~~d~dg-~~~~~lt~~~--~~v~~p~wSp--DG~~lay~s~~~g~~~i~~~dl~~g~~~~-----l~~~~g~~--~ 249 (435)
T PRK05137 182 KRLAIMDQDG-ANVRYLTDGS--SLVLTPRFSP--NRQEITYMSYANGRPRVYLLDLETGQREL-----VGNFPGMT--F 249 (435)
T ss_pred eEEEEECCCC-CCcEEEecCC--CCeEeeEECC--CCCEEEEEEecCCCCEEEEEECCCCcEEE-----eecCCCcc--c
Confidence 4789999754 4444555565 4499999999 9998887664 4689999998875311 11100000 0
Q ss_pred eeeeccccccccCCCCcceeeccCCceeeecCCCCCCceeccCCCceEEEeecCcC--eEEEEecCCCceeeeecccccC
Q 021291 117 SLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQLS--EVEIWDLNTAERCTRLHQNSCG 194 (314)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~--~i~vwd~~~~~~~~~~~~~~~~ 194 (314)
..+|+|+|+.++++ .+.++ .|++||+.+++.. .+.
T Consensus 250 ------------------------------------~~~~SPDG~~la~~-~~~~g~~~Iy~~d~~~~~~~-~Lt----- 286 (435)
T PRK05137 250 ------------------------------------APRFSPDGRKVVMS-LSQGGNTDIYTMDLRSGTTT-RLT----- 286 (435)
T ss_pred ------------------------------------CcEECCCCCEEEEE-EecCCCceEEEEECCCCceE-Ecc-----
Confidence 04699999887653 44344 4788898877643 343
Q ss_pred CCCCcCCCCCceeeeEEEecCCCCCCceEEEEee-cCC--cEEEEEccCCCCceEeeecCCcceEEEEEeCCCCeEEEec
Q 021291 195 GSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGY-EDG--SILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGG 271 (314)
Q Consensus 195 ~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~-~dg--~i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s 271 (314)
.+. ....... |+|| |+ .|+..+ .+| .|+++|+.. + ....+..+...+....|+|+|++|+..+
T Consensus 287 ---~~~----~~~~~~~-~spD---G~-~i~f~s~~~g~~~Iy~~d~~g-~-~~~~lt~~~~~~~~~~~SpdG~~ia~~~ 352 (435)
T PRK05137 287 ---DSP----AIDTSPS-YSPD---GS-QIVFESDRSGSPQLYVMNADG-S-NPRRISFGGGRYSTPVWSPRGDLIAFTK 352 (435)
T ss_pred ---CCC----CccCcee-EcCC---CC-EEEEEECCCCCCeEEEEECCC-C-CeEEeecCCCcccCeEECCCCCEEEEEE
Confidence 221 2233444 9998 55 454443 343 588888764 3 3444544455677789999999987765
Q ss_pred CC---CcEEEEecCCCeeeEe-----eeeeeecCCCceece
Q 021291 272 AD---QKIVLYNLDHSTYVLF-----GIGFVCDQEGNKFGT 304 (314)
Q Consensus 272 ~d---g~i~iw~~~~~~~~~~-----~~~~~~~~~~~~~~~ 304 (314)
.+ ..|.+||+..+..... ....+++|+|..+.-
T Consensus 353 ~~~~~~~i~~~d~~~~~~~~lt~~~~~~~p~~spDG~~i~~ 393 (435)
T PRK05137 353 QGGGQFSIGVMKPDGSGERILTSGFLVEGPTWAPNGRVIMF 393 (435)
T ss_pred cCCCceEEEEEECCCCceEeccCCCCCCCCeECCCCCEEEE
Confidence 43 3588888765543221 123456677765543
No 229
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.45 E-value=7e-13 Score=107.67 Aligned_cols=86 Identities=21% Similarity=0.293 Sum_probs=73.6
Q ss_pred eEEecCCCCceeEEEEccCCCEEEEecCCCeEEEEeCCCCeEEEEEeccCCcccEEEEEEcccCCCCeEEEeecCCeEEE
Q 021291 11 VAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKC 90 (314)
Q Consensus 11 ~~~l~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~v~i 90 (314)
+..+.--++.|+..+|+|||++||+.+.||.+||||..+.+.+..++..- +...|++|+| ||+++++|++|.-|.|
T Consensus 283 v~~w~~~~g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~eLlg~mkSYF--GGLLCvcWSP--DGKyIvtGGEDDLVtV 358 (636)
T KOG2394|consen 283 VARWHIGEGSINEFAFSPDGKYLATVSQDGFLRIFDFDTQELLGVMKSYF--GGLLCVCWSP--DGKYIVTGGEDDLVTV 358 (636)
T ss_pred cceeEeccccccceeEcCCCceEEEEecCceEEEeeccHHHHHHHHHhhc--cceEEEEEcC--CccEEEecCCcceEEE
Confidence 33333345689999999999999999999999999999988887776665 4499999999 9999999999999999
Q ss_pred EeCCCCCCCC
Q 021291 91 WDIENGGLSS 100 (314)
Q Consensus 91 wd~~~~~~~~ 100 (314)
|.+...+.+.
T Consensus 359 wSf~erRVVA 368 (636)
T KOG2394|consen 359 WSFEERRVVA 368 (636)
T ss_pred EEeccceEEE
Confidence 9999887543
No 230
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.44 E-value=1.3e-10 Score=99.16 Aligned_cols=225 Identities=11% Similarity=0.024 Sum_probs=132.1
Q ss_pred ceEEecCCCCceeEEEEccCCCEEEEecCC---CeEEEEeCCCCeEEEEEeccCCcccEEEEEEcccCCCCeEE-EeecC
Q 021291 10 PVAVLRGHRASVTDVCFHQTKPILFAGTTG---GELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVI-SQGRD 85 (314)
Q Consensus 10 ~~~~l~~h~~~v~~~~~~~~~~~l~s~~~d---g~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~-s~~~d 85 (314)
..+.+..+...+...+|+|||+.|+..+.+ ..|.+||+.+++... +.... ..+....|+| +|+.|+ +.+.+
T Consensus 190 ~~~~l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~-l~~~~--g~~~~~~~Sp--DG~~la~~~~~~ 264 (430)
T PRK00178 190 RAVTLLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQ-ITNFE--GLNGAPAWSP--DGSKLAFVLSKD 264 (430)
T ss_pred CceEEecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEE-ccCCC--CCcCCeEECC--CCCEEEEEEccC
Confidence 345555677889999999999988776543 369999998876543 22222 2256789999 988877 45555
Q ss_pred C--eEEEEeCCCCCCCCCCeeeeecceeeEEEeeeeeccccccccCCCCcceeeccCCceeeecCCCCCCceeccCCCce
Q 021291 86 G--TVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKY 163 (314)
Q Consensus 86 g--~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (314)
| .|.+||+.+++... +....... . ...|+|+|+.+
T Consensus 265 g~~~Iy~~d~~~~~~~~-----lt~~~~~~--~------------------------------------~~~~spDg~~i 301 (430)
T PRK00178 265 GNPEIYVMDLASRQLSR-----VTNHPAID--T------------------------------------EPFWGKDGRTL 301 (430)
T ss_pred CCceEEEEECCCCCeEE-----cccCCCCc--C------------------------------------CeEECCCCCEE
Confidence 5 58888988765321 11100000 0 04589999887
Q ss_pred EEEeecCc--CeEEEEecCCCceeeeecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEee-cCC--cEEEEEc
Q 021291 164 MAVAGEQL--SEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGY-EDG--SILVWDI 238 (314)
Q Consensus 164 ~~~~g~~d--~~i~vwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~-~dg--~i~vwd~ 238 (314)
+..+ ..+ ..|+++|+.+++....... +. ...... |+|+ |+ .++... .++ .|.+||+
T Consensus 302 ~f~s-~~~g~~~iy~~d~~~g~~~~lt~~-------~~------~~~~~~-~Spd---g~-~i~~~~~~~~~~~l~~~dl 362 (430)
T PRK00178 302 YFTS-DRGGKPQIYKVNVNGGRAERVTFV-------GN------YNARPR-LSAD---GK-TLVMVHRQDGNFHVAAQDL 362 (430)
T ss_pred EEEE-CCCCCceEEEEECCCCCEEEeecC-------CC------CccceE-ECCC---CC-EEEEEEccCCceEEEEEEC
Confidence 6643 333 3577888877764322110 11 112233 9998 55 444443 333 5888898
Q ss_pred cCCCCceEeeecCCcceEEEEEeCCCCeEEEecCC---CcEEEEecCCCeeeEeeeeeeecCCCceeceeeccc
Q 021291 239 RNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGAD---QKIVLYNLDHSTYVLFGIGFVCDQEGNKFGTTWHIR 309 (314)
Q Consensus 239 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d---g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~ 309 (314)
.+ +.. ..+.. ........|+|+|+.|+..+.+ ..|.+++++.... ..+. .+.|......|.+.
T Consensus 363 ~t-g~~-~~lt~-~~~~~~p~~spdg~~i~~~~~~~g~~~l~~~~~~g~~~-~~l~----~~~g~~~~p~ws~~ 428 (430)
T PRK00178 363 QR-GSV-RILTD-TSLDESPSVAPNGTMLIYATRQQGRGVLMLVSINGRVR-LPLP----TAQGEVREPSWSPY 428 (430)
T ss_pred CC-CCE-EEccC-CCCCCCceECCCCCEEEEEEecCCceEEEEEECCCCce-EECc----CCCCCcCCCccCCC
Confidence 86 433 33332 2222356899999988766543 3466777754332 2211 24555556667653
No 231
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.44 E-value=9.6e-11 Score=99.65 Aligned_cols=204 Identities=14% Similarity=0.080 Sum_probs=125.6
Q ss_pred CceEEecCCCCceeEEEEccCCCEEEEecCC---CeEEEEeCCCCeEEEEEeccCCcccEEEEEEcccCCCCeEE-Eeec
Q 021291 9 DPVAVLRGHRASVTDVCFHQTKPILFAGTTG---GELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVI-SQGR 84 (314)
Q Consensus 9 ~~~~~l~~h~~~v~~~~~~~~~~~l~s~~~d---g~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~-s~~~ 84 (314)
...+.+..+...+...+|+|||++|+.++.+ ..|++||+.+++.... ..+. ..+.+++|+| +++.|+ +.+.
T Consensus 180 ~~~~~l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~~-~~~~--~~~~~~~~sp--Dg~~l~~~~~~ 254 (417)
T TIGR02800 180 ANPQTITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREKV-ASFP--GMNGAPAFSP--DGSKLAVSLSK 254 (417)
T ss_pred CCCEEeecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEEe-ecCC--CCccceEECC--CCCEEEEEECC
Confidence 3345555677789999999999999877653 4799999988765433 2333 3367899999 988776 4444
Q ss_pred CC--eEEEEeCCCCCCCCCCeeeeecceeeEEEeeeeeccccccccCCCCcceeeccCCceeeecCCCCCCceeccCCCc
Q 021291 85 DG--TVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPK 162 (314)
Q Consensus 85 dg--~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (314)
++ .|.+||+.++.... +....... . ...|+|+|+.
T Consensus 255 ~~~~~i~~~d~~~~~~~~-----l~~~~~~~--~------------------------------------~~~~s~dg~~ 291 (417)
T TIGR02800 255 DGNPDIYVMDLDGKQLTR-----LTNGPGID--T------------------------------------EPSWSPDGKS 291 (417)
T ss_pred CCCccEEEEECCCCCEEE-----CCCCCCCC--C------------------------------------CEEECCCCCE
Confidence 44 58888888764311 11100000 0 0358899987
Q ss_pred eEEEeecCcC--eEEEEecCCCceeeeecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEeecCC---cEEEEE
Q 021291 163 YMAVAGEQLS--EVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDG---SILVWD 237 (314)
Q Consensus 163 ~~~~~g~~d~--~i~vwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg---~i~vwd 237 (314)
+++++ ..++ .|+++|+.+++.. .+. .+ ........ |+|+ |+ +++.++.++ .|.+||
T Consensus 292 l~~~s-~~~g~~~iy~~d~~~~~~~-~l~--------~~----~~~~~~~~-~spd---g~-~i~~~~~~~~~~~i~~~d 352 (417)
T TIGR02800 292 IAFTS-DRGGSPQIYMMDADGGEVR-RLT--------FR----GGYNASPS-WSPD---GD-LIAFVHREGGGFNIAVMD 352 (417)
T ss_pred EEEEE-CCCCCceEEEEECCCCCEE-Eee--------cC----CCCccCeE-ECCC---CC-EEEEEEccCCceEEEEEe
Confidence 76543 3233 6888888766543 232 11 11334455 9998 55 666666554 788899
Q ss_pred ccCCCCceEeeecCCcceEEEEEeCCCCeEEEecCCC---cEEEEecC
Q 021291 238 IRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQ---KIVLYNLD 282 (314)
Q Consensus 238 ~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg---~i~iw~~~ 282 (314)
+.+ +. ...+... .......|+|++++|+..+.++ .+.+.+.+
T Consensus 353 ~~~-~~-~~~l~~~-~~~~~p~~spdg~~l~~~~~~~~~~~l~~~~~~ 397 (417)
T TIGR02800 353 LDG-GG-ERVLTDT-GLDESPSFAPNGRMILYATTRGGRGVLGLVSTD 397 (417)
T ss_pred CCC-CC-eEEccCC-CCCCCceECCCCCEEEEEEeCCCcEEEEEEECC
Confidence 886 33 2333322 2334568999999887777654 35555544
No 232
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.44 E-value=3.3e-11 Score=102.46 Aligned_cols=196 Identities=13% Similarity=0.097 Sum_probs=119.0
Q ss_pred CeEEEEeCCCCeEEEEEeccCCcccEEEEEEcccCCCCeEEEeecC---CeEEEEeCCCCCCCCCCeeeeecceeeEEEe
Q 021291 40 GELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRD---GTVKCWDIENGGLSSNPSLTIKTNSYHFCKL 116 (314)
Q Consensus 40 g~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d---g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 116 (314)
..|.+||... .....+..+. ..+.+.+|+| |++.|+..+.+ ..|.+||+.+++... +..... ...
T Consensus 184 ~~l~i~D~~g-~~~~~lt~~~--~~v~~p~wSp--Dg~~la~~s~~~~~~~l~~~dl~~g~~~~--l~~~~g--~~~--- 251 (433)
T PRK04922 184 YALQVADSDG-YNPQTILRSA--EPILSPAWSP--DGKKLAYVSFERGRSAIYVQDLATGQREL--VASFRG--ING--- 251 (433)
T ss_pred EEEEEECCCC-CCceEeecCC--CccccccCCC--CCCEEEEEecCCCCcEEEEEECCCCCEEE--eccCCC--Ccc---
Confidence 4699999764 4444455555 4499999999 99999877643 469999998775311 100100 000
Q ss_pred eeeeccccccccCCCCcceeeccCCceeeecCCCCCCceeccCCCceEEEeecCcC--eEEEEecCCCceeeeecccccC
Q 021291 117 SLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQLS--EVEIWDLNTAERCTRLHQNSCG 194 (314)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~--~i~vwd~~~~~~~~~~~~~~~~ 194 (314)
..+|+|+|+.++++. +.++ .|++||+.+++.. .+.
T Consensus 252 ------------------------------------~~~~SpDG~~l~~~~-s~~g~~~Iy~~d~~~g~~~-~lt----- 288 (433)
T PRK04922 252 ------------------------------------APSFSPDGRRLALTL-SRDGNPEIYVMDLGSRQLT-RLT----- 288 (433)
T ss_pred ------------------------------------CceECCCCCEEEEEE-eCCCCceEEEEECCCCCeE-ECc-----
Confidence 046999998876543 3334 6999999887643 333
Q ss_pred CCCCcCCCCCceeeeEEEecCCCCCCceEEEEeecCCc--EEEEEccCCCCceEeeecCCcceEEEEEeCCCCeEEEecC
Q 021291 195 GSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGS--ILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGA 272 (314)
Q Consensus 195 ~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~--i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~ 272 (314)
.+. ....... |+|+ |+.++++...+|. |+++|+.. ++ ...+..+.......+|+|+|++|+..+.
T Consensus 289 ---~~~----~~~~~~~-~spD---G~~l~f~sd~~g~~~iy~~dl~~-g~-~~~lt~~g~~~~~~~~SpDG~~Ia~~~~ 355 (433)
T PRK04922 289 ---NHF----GIDTEPT-WAPD---GKSIYFTSDRGGRPQIYRVAASG-GS-AERLTFQGNYNARASVSPDGKKIAMVHG 355 (433)
T ss_pred ---cCC----CCccceE-ECCC---CCEEEEEECCCCCceEEEEECCC-CC-eEEeecCCCCccCEEECCCCCEEEEEEC
Confidence 221 1233455 9998 5523444444554 66667665 33 3333333444557899999999876654
Q ss_pred CC---cEEEEecCCCeeeEee-----eeeeecCCCceec
Q 021291 273 DQ---KIVLYNLDHSTYVLFG-----IGFVCDQEGNKFG 303 (314)
Q Consensus 273 dg---~i~iw~~~~~~~~~~~-----~~~~~~~~~~~~~ 303 (314)
++ .|.+||+.+++..... ...+++++|..+.
T Consensus 356 ~~~~~~I~v~d~~~g~~~~Lt~~~~~~~p~~spdG~~i~ 394 (433)
T PRK04922 356 SGGQYRIAVMDLSTGSVRTLTPGSLDESPSFAPNGSMVL 394 (433)
T ss_pred CCCceeEEEEECCCCCeEECCCCCCCCCceECCCCCEEE
Confidence 33 5999999877654321 1235567776543
No 233
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.43 E-value=1.4e-12 Score=106.33 Aligned_cols=168 Identities=18% Similarity=0.189 Sum_probs=111.2
Q ss_pred EEEEeccCCcccEEEEEEcccCCCCeEEEeecCCeEEEEeCCCCCCCCCCeeeeecceeeEEEeeeeeccccccccCCCC
Q 021291 53 VSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEP 132 (314)
Q Consensus 53 ~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 132 (314)
.+.+.+|. +.|.|+.|+. +|.+|++||.|-.+.|||.-..+.. ..+++. .....|+
T Consensus 43 E~eL~GH~--GCVN~LeWn~--dG~lL~SGSDD~r~ivWd~~~~Kll----hsI~Tg-HtaNIFs--------------- 98 (758)
T KOG1310|consen 43 EAELTGHT--GCVNCLEWNA--DGELLASGSDDTRLIVWDPFEYKLL----HSISTG-HTANIFS--------------- 98 (758)
T ss_pred hhhhcccc--ceecceeecC--CCCEEeecCCcceEEeecchhccee----eeeecc-cccceeE---------------
Confidence 35677898 4599999999 9999999999999999999865542 233322 1122232
Q ss_pred cceeeccCCceeeecCCCCCCceeccCCCceEEEeecCcCeEEEEecCCCc----------eeeeecccccCCCCCcCCC
Q 021291 133 KDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQLSEVEIWDLNTAE----------RCTRLHQNSCGGSPNFSSK 202 (314)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~vwd~~~~~----------~~~~~~~~~~~~~~~h~~~ 202 (314)
+.|-|....-++++|..|..|++||+...+ ....+. .|..
T Consensus 99 ---------------------vKFvP~tnnriv~sgAgDk~i~lfdl~~~~~~~~d~~~~~~~~~~~--------cht~- 148 (758)
T KOG1310|consen 99 ---------------------VKFVPYTNNRIVLSGAGDKLIKLFDLDSSKEGGMDHGMEETTRCWS--------CHTD- 148 (758)
T ss_pred ---------------------EeeeccCCCeEEEeccCcceEEEEecccccccccccCccchhhhhh--------hhhh-
Confidence 224454444455578889999999998522 111222 3333
Q ss_pred CCceeeeEEEecCCCCCCceEEEEeecCCcEEEEEccCCCCceEeeecC---------CcceEEEEEeCCC-CeEEEecC
Q 021291 203 GRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVH---------LEPVLCLSIDESC-NGGISGGA 272 (314)
Q Consensus 203 ~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~h---------~~~v~~~~~~~~~-~~l~s~s~ 272 (314)
.+-.++ -.|+++ ..+.++++||+|+-+|++.+..+-.....| --...++..+|.. .+|+.|+.
T Consensus 149 ---rVKria-~~p~~P---htfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny~~~lielk~ltisp~rp~~laVGgs 221 (758)
T KOG1310|consen 149 ---RVKRIA-TAPNGP---HTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNYNPQLIELKCLTISPSRPYYLAVGGS 221 (758)
T ss_pred ---hhhhee-cCCCCC---ceEEEecCCcceeeecccCCccCCccccccHHHHHhchhhheeeeeeecCCCCceEEecCC
Confidence 222333 455533 289999999999999999754433322222 2245678887754 47899999
Q ss_pred CCcEEEEec
Q 021291 273 DQKIVLYNL 281 (314)
Q Consensus 273 dg~i~iw~~ 281 (314)
|-..++||.
T Consensus 222 dpfarLYD~ 230 (758)
T KOG1310|consen 222 DPFARLYDR 230 (758)
T ss_pred Cchhhhhhh
Confidence 999999994
No 234
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=99.42 E-value=1.3e-12 Score=119.60 Aligned_cols=200 Identities=16% Similarity=0.290 Sum_probs=146.6
Q ss_pred ecCCCCceeEEEEccCCCEEEEecCCCeEEEEeCCCCeEEEEEeccCCcccEEEEEEcccCCCCeEEEeecCCeEEEEeC
Q 021291 14 LRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDI 93 (314)
Q Consensus 14 l~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd~ 93 (314)
++.|-..|.++.-+|...+.+||+.||.|++|....++.+..++.... +.|+.+.|+. .|+.+..+..||.+.+|.+
T Consensus 2204 ~k~~v~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~-s~vtr~~f~~--qGnk~~i~d~dg~l~l~q~ 2280 (2439)
T KOG1064|consen 2204 IKHPVENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRTAGN-SRVTRSRFNH--QGNKFGIVDGDGDLSLWQA 2280 (2439)
T ss_pred eecccCceeeecCCCCCceEEecCCCceEEEEeccCCCeEEEeeccCc-chhhhhhhcc--cCCceeeeccCCceeeccc
Confidence 344567788888889888999999999999999999988888876554 7799999999 9999999999999999998
Q ss_pred CCCCCCCCCeeeeecceeeEEEeeeeeccccccccCCCCcceeeccCCceeeecCCCCCCceeccCCCceEEEee--cCc
Q 021291 94 ENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAG--EQL 171 (314)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g--~~d 171 (314)
.. +|.+..+.+......|.+. . .+++.+| +.+
T Consensus 2281 ~p-----k~~~s~qchnk~~~Df~Fi--------------------------------------~---s~~~tag~s~d~ 2314 (2439)
T KOG1064|consen 2281 SP-----KPYTSWQCHNKALSDFRFI--------------------------------------G---SLLATAGRSSDN 2314 (2439)
T ss_pred CC-----cceeccccCCccccceeee--------------------------------------e---hhhhccccCCCC
Confidence 83 3344444443333322221 1 1222222 346
Q ss_pred CeEEEEecCCCceeeeecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEeecCCcEEEEEccCCCCceEeeecC
Q 021291 172 SEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVH 251 (314)
Q Consensus 172 ~~i~vwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~h 251 (314)
+.+.+||..-.....-+.. .| .+.+++++ |.|.. + +|++|+.+|.|++||++. .+..+.++.
T Consensus 2315 ~n~~lwDtl~~~~~s~v~~-------~H----~~gaT~l~-~~P~~---q-llisggr~G~v~l~D~rq-rql~h~~~~- 2376 (2439)
T KOG1064|consen 2315 RNVCLWDTLLPPMNSLVHT-------CH----DGGATVLA-YAPKH---Q-LLISGGRKGEVCLFDIRQ-RQLRHTFQA- 2376 (2439)
T ss_pred CcccchhcccCcccceeee-------ec----CCCceEEE-EcCcc---e-EEEecCCcCcEEEeehHH-HHHHHHhhh-
Confidence 8899999753321111111 45 44677787 99973 3 999999999999999997 777766665
Q ss_pred CcceEEEEEeCCCCeEEEecCCCcEEEEecCCCeeeEe
Q 021291 252 LEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTYVLF 289 (314)
Q Consensus 252 ~~~v~~~~~~~~~~~l~s~s~dg~i~iw~~~~~~~~~~ 289 (314)
++ ...++++|+..|.++||++.....+..
T Consensus 2377 --------~~-~~~~f~~~ss~g~ikIw~~s~~~ll~~ 2405 (2439)
T KOG1064|consen 2377 --------LD-TREYFVTGSSEGNIKIWRLSEFGLLHT 2405 (2439)
T ss_pred --------hh-hhheeeccCcccceEEEEccccchhhc
Confidence 44 455899999999999999998866654
No 235
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.42 E-value=4e-12 Score=97.50 Aligned_cols=188 Identities=14% Similarity=0.103 Sum_probs=121.7
Q ss_pred EEEEccCCCEEEEecCCCeEEEEeCCCCeEEEEEeccCCcccEEEEEEcccCCCCeEE-EeecCCeEEEEeCCCCCCCCC
Q 021291 23 DVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVI-SQGRDGTVKCWDIENGGLSSN 101 (314)
Q Consensus 23 ~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~-s~~~dg~v~iwd~~~~~~~~~ 101 (314)
-++|||+|+++|+++.- .+.|-|.++-+..+.+..- +.|.-+.|.. |.-+++ ....|+.|.+|++...+.-.
T Consensus 13 ~c~fSp~g~yiAs~~~y-rlviRd~~tlq~~qlf~cl---dki~yieW~a--ds~~ilC~~yk~~~vqvwsl~Qpew~c- 85 (447)
T KOG4497|consen 13 FCSFSPCGNYIASLSRY-RLVIRDSETLQLHQLFLCL---DKIVYIEWKA--DSCHILCVAYKDPKVQVWSLVQPEWYC- 85 (447)
T ss_pred ceeECCCCCeeeeeeee-EEEEeccchhhHHHHHHHH---HHhhheeeec--cceeeeeeeeccceEEEEEeecceeEE-
Confidence 47899999999999877 6888888876544433222 3488889988 655554 56778999999998765422
Q ss_pred CeeeeecceeeEEEeeeeeccccccccCCCCcceeeccCCceeeecCCCCCCceeccCCCceEEEeecCcCeEEEEecCC
Q 021291 102 PSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQLSEVEIWDLNT 181 (314)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~vwd~~~ 181 (314)
.+...+..... ++|||+|+.++. +...|-.|.+|.+.+
T Consensus 86 ---kIdeg~agls~--------------------------------------~~WSPdgrhiL~-tseF~lriTVWSL~t 123 (447)
T KOG4497|consen 86 ---KIDEGQAGLSS--------------------------------------ISWSPDGRHILL-TSEFDLRITVWSLNT 123 (447)
T ss_pred ---EeccCCCccee--------------------------------------eeECCCcceEee-eecceeEEEEEEecc
Confidence 22222221111 569999998887 566689999999987
Q ss_pred CceeeeecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEeec-C------------------------------
Q 021291 182 AERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYE-D------------------------------ 230 (314)
Q Consensus 182 ~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~-d------------------------------ 230 (314)
...... + | .+..+-.++ |+|+ |+ +.+..+. |
T Consensus 124 ~~~~~~-~---------~---pK~~~kg~~-f~~d---g~-f~ai~sRrDCkdyv~i~~c~~W~ll~~f~~dT~Dltgie 185 (447)
T KOG4497|consen 124 QKGYLL-P---------H---PKTNVKGYA-FHPD---GQ-FCAILSRRDCKDYVQISSCKAWILLKEFKLDTIDLTGIE 185 (447)
T ss_pred ceeEEe-c---------c---cccCceeEE-ECCC---Cc-eeeeeecccHHHHHHHHhhHHHHHHHhcCCCcccccCce
Confidence 664332 1 2 111223343 8887 55 4444332 1
Q ss_pred -----CcEEEEEccCCCCceEeeecC-CcceEEEEEeCCCCeEEEecCCCcEEEEe
Q 021291 231 -----GSILVWDIRNPGIPLTAMKVH-LEPVLCLSIDESCNGGISGGADQKIVLYN 280 (314)
Q Consensus 231 -----g~i~vwd~~~~~~~~~~~~~h-~~~v~~~~~~~~~~~l~s~s~dg~i~iw~ 280 (314)
..+.|||.-- .-.+ +.-| .-.+..++|+|.+++|+.|+.|+.+||-+
T Consensus 186 WsPdg~~laVwd~~L-eykv--~aYe~~lG~k~v~wsP~~qflavGsyD~~lrvln 238 (447)
T KOG4497|consen 186 WSPDGNWLAVWDNVL-EYKV--YAYERGLGLKFVEWSPCNQFLAVGSYDQMLRVLN 238 (447)
T ss_pred ECCCCcEEEEecchh-hhee--eeeeeccceeEEEeccccceEEeeccchhhhhhc
Confidence 2344454321 1111 1222 35788999999999999999999999855
No 236
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.40 E-value=8.5e-11 Score=104.54 Aligned_cols=262 Identities=13% Similarity=0.092 Sum_probs=156.2
Q ss_pred EecCCCCceeEEEEccCCCEEEEecCCCeEEEEeCCC--Ce-----EEEEEeccCCcccEEEE-EEcccCCCC-eEEEee
Q 021291 13 VLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQ--HR-----TVSSSWVHSAAHGIVSV-ATGPSIGLN-KVISQG 83 (314)
Q Consensus 13 ~l~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~--~~-----~~~~~~~~~~~~~v~~~-~~~~~~~~~-~l~s~~ 83 (314)
++..-...+.++.+.+.++.+|.++.||.|++.+++. .+ +.+....+.. +.+.+| +|... ... .++.+.
T Consensus 1093 tys~~~sr~~~vt~~~~~~~~Av~t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~-g~vv~m~a~~~~-~~S~~lvy~T 1170 (1431)
T KOG1240|consen 1093 TYSPEGSRVEKVTMCGNGDQFAVSTKDGSVRVLRIDHYNVSKRVATQVRIPNLKKD-GVVVSMHAFTAI-VQSHVLVYAT 1170 (1431)
T ss_pred EEeccCCceEEEEeccCCCeEEEEcCCCeEEEEEccccccccceeeeeecccccCC-CceEEeeccccc-ccceeEEEEE
Confidence 3333467888999999999999999999999999875 22 1222222332 234444 45442 333 778888
Q ss_pred cCCeEEEEeCCCCCCCCCCeeeeecceeeEEEeeeeeccccccccCCCCcceeeccCCceeeec-CCCCCC---ceeccC
Q 021291 84 RDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTD-SLCDSK---DDVPAE 159 (314)
Q Consensus 84 ~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~---~~~~~~ 159 (314)
.-+.|..||++.....+......+.........++... -...+...+...+|+++....+..- .+.+.. +..+|-
T Consensus 1171 ~~~~iv~~D~r~~~~~w~lk~~~~hG~vTSi~idp~~~-WlviGts~G~l~lWDLRF~~~i~sw~~P~~~~i~~v~~~~~ 1249 (1431)
T KOG1240|consen 1171 DLSRIVSWDTRMRHDAWRLKNQLRHGLVTSIVIDPWCN-WLVIGTSRGQLVLWDLRFRVPILSWEHPARAPIRHVWLCPT 1249 (1431)
T ss_pred eccceEEecchhhhhHHhhhcCccccceeEEEecCCce-EEEEecCCceEEEEEeecCceeecccCcccCCcceEEeecc
Confidence 88999999999876555333344444444444444333 3334555566788888877655443 333322 444443
Q ss_pred CC--ceEEEeec-CcCeEEEEecCCCceeeeecccccCCCCCcCCCCC-----ceeeeEEEecCCCCCCceEEEEeecCC
Q 021291 160 GP--KYMAVAGE-QLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGR-----GMCMAVQAYLPSKSQGFVNVLAGYEDG 231 (314)
Q Consensus 160 ~~--~~~~~~g~-~d~~i~vwd~~~~~~~~~~~~~~~~~~~~h~~~~~-----~~~~~~~~~~p~~~~g~~~l~~g~~dg 231 (314)
.+ ...+++|+ ..+.|.+|++.++.+...+..........+..+.. ....... ..+.+. +. ++.+|+.|.
T Consensus 1250 ~~~~S~~vs~~~~~~nevs~wn~~~g~~~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~-~~~~~~-~~-~~ltggsd~ 1326 (1431)
T KOG1240|consen 1250 YPQESVSVSAGSSSNNEVSTWNMETGLRQTVLWASDGAPILSYALPSNDARKPDSLAGIS-CGVCEK-NG-FLLTGGSDM 1326 (1431)
T ss_pred CCCCceEEEecccCCCceeeeecccCcceEEEEcCCCCcchhhhcccccCCCCCccccee-eecccC-Cc-eeeecCCcc
Confidence 33 44444555 57889999999998766665321111111111111 1111111 111212 22 899999999
Q ss_pred cEEEEEccCCCCc----------------------------eE-------------------e--------eecCCcceE
Q 021291 232 SILVWDIRNPGIP----------------------------LT-------------------A--------MKVHLEPVL 256 (314)
Q Consensus 232 ~i~vwd~~~~~~~----------------------------~~-------------------~--------~~~h~~~v~ 256 (314)
.|+.||...+... +. . -..|.++|+
T Consensus 1327 kIR~wD~~~p~~ss~~~~~~s~~~~~~~~s~~~~~i~~~~~i~e~i~~~~tv~~t~~~~~~~~~~~~~~~ps~~H~d~It 1406 (1431)
T KOG1240|consen 1327 KIRKWDPTRPEISSYAVPGPSTSYSTNSESYDLSTIPGSQFIDEFIIYQQTVGLTEALRENQKLRPGPSDPSTYHHDPIT 1406 (1431)
T ss_pred ceeeccCCCcccccccccCccccccccchhccccccCCCccchhhhhhhhhcCchhhcccccccccCCCCCcccccchhh
Confidence 9999997642111 00 0 124778999
Q ss_pred EEEEe-CCCCeEEEecCCCcEEEEe
Q 021291 257 CLSID-ESCNGGISGGADQKIVLYN 280 (314)
Q Consensus 257 ~~~~~-~~~~~l~s~s~dg~i~iw~ 280 (314)
+|++- .+..+|++++.||.|+||.
T Consensus 1407 dma~~~~~q~llvs~s~dG~IkiWk 1431 (1431)
T KOG1240|consen 1407 DMATLKSEQPLLVSSSRDGVIKIWK 1431 (1431)
T ss_pred hhhhhccCccEEEEecCCCeeeecC
Confidence 99883 2355789999999999994
No 237
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.40 E-value=3.6e-13 Score=114.73 Aligned_cols=204 Identities=16% Similarity=0.259 Sum_probs=131.7
Q ss_pred CCceEEecCCCCceeEEEEccCCCEEEEecCCCeEEEEeCCCCeEEEEEeccCCcccEEEEEEcccCCCCeEEEeecCCe
Q 021291 8 PDPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGT 87 (314)
Q Consensus 8 ~~~~~~l~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~ 87 (314)
..++..++||.+.|+.++.+.++.++++++.|..|++|.+.++..+..+++|+++ |++++|+|. .+.+.||+
T Consensus 222 ~~~lAs~rGhs~ditdlavs~~n~~iaaaS~D~vIrvWrl~~~~pvsvLrghtga--vtaiafsP~------~sss~dgt 293 (1113)
T KOG0644|consen 222 ARCLASCRGHSGDITDLAVSSNNTMIAAASNDKVIRVWRLPDGAPVSVLRGHTGA--VTAIAFSPR------ASSSDDGT 293 (1113)
T ss_pred hhhhccCCCCccccchhccchhhhhhhhcccCceEEEEecCCCchHHHHhccccc--eeeeccCcc------ccCCCCCc
Confidence 3567889999999999999999999999999999999999999999999999966 999999992 27888999
Q ss_pred EEEEeCC-CCC-CCCCCeeeeecceeeEEEe--eeeeccccccccCC----------------------C----------
Q 021291 88 VKCWDIE-NGG-LSSNPSLTIKTNSYHFCKL--SLVKEPYANAKQAN----------------------E---------- 131 (314)
Q Consensus 88 v~iwd~~-~~~-~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~----------------------~---------- 131 (314)
+++||.+ ... ....|. ..... ...+.+ ...+........++ .
T Consensus 294 ~~~wd~r~~~~~y~prp~-~~~~~-~~~~s~~~~~~~~~f~Tgs~d~ea~n~e~~~l~~~~~~lif~t~ssd~~~~~~~a 371 (1113)
T KOG0644|consen 294 CRIWDARLEPRIYVPRPL-KFTEK-DLVDSILFENNGDRFLTGSRDGEARNHEFEQLAWRSNLLIFVTRSSDLSSIVVTA 371 (1113)
T ss_pred eEeccccccccccCCCCC-Ccccc-cceeeeeccccccccccccCCcccccchhhHhhhhccceEEEeccccccccceee
Confidence 9999987 111 010000 00000 000000 00000000000000 0
Q ss_pred ----CcceeeccCCceeeecCCCCCC----ceeccCCCceEEEeecCcCeEEEEecCCCceeeeecccccCCCCCcCCCC
Q 021291 132 ----PKDCYEREVGETVDTDSLCDSK----DDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKG 203 (314)
Q Consensus 132 ----~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~g~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~h~~~~ 203 (314)
....|++..+ .....+.+|.+ +.++|-+..+.. +++.||...|||+-.+.+++.+.. +|..
T Consensus 372 r~~~~~~vwnl~~g-~l~H~l~ghsd~~yvLd~Hpfn~ri~m-sag~dgst~iwdi~eg~pik~y~~-------gh~k-- 440 (1113)
T KOG0644|consen 372 RNDHRLCVWNLYTG-QLLHNLMGHSDEVYVLDVHPFNPRIAM-SAGYDGSTIIWDIWEGIPIKHYFI-------GHGK-- 440 (1113)
T ss_pred eeeeEeeeeecccc-hhhhhhcccccceeeeeecCCCcHhhh-hccCCCceEeeecccCCcceeeec-------ccce--
Confidence 0001111111 11223344555 888898887766 555699999999999988877663 5533
Q ss_pred CceeeeEEEecCCCCCCceEEEEeecCCcEEEEEccC
Q 021291 204 RGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRN 240 (314)
Q Consensus 204 ~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~ 240 (314)
..... |+++ |. .++....-|.++|.....
T Consensus 441 ---l~d~k-FSqd---gt-s~~lsd~hgql~i~g~gq 469 (1113)
T KOG0644|consen 441 ---LVDGK-FSQD---GT-SIALSDDHGQLYILGTGQ 469 (1113)
T ss_pred ---eeccc-cCCC---Cc-eEecCCCCCceEEeccCC
Confidence 33333 9998 55 677777778888887653
No 238
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.38 E-value=4.9e-10 Score=95.43 Aligned_cols=222 Identities=13% Similarity=0.089 Sum_probs=124.2
Q ss_pred EecCCCCceeEEEEccCCCEEEEecCC---CeEEEEeCCCCeEEEEEeccCCcccEEEEEEcccCCCCeEEE-eecCCe-
Q 021291 13 VLRGHRASVTDVCFHQTKPILFAGTTG---GELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVIS-QGRDGT- 87 (314)
Q Consensus 13 ~l~~h~~~v~~~~~~~~~~~l~s~~~d---g~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s-~~~dg~- 87 (314)
.+..+...+.+..|+|||+.|+..+.+ ..|.+||+.+++... +.... ......+|+| |++.|+. .+.+|.
T Consensus 212 ~l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~-lt~~~--g~~~~~~wSP--DG~~La~~~~~~g~~ 286 (448)
T PRK04792 212 MLLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREK-VTSFP--GINGAPRFSP--DGKKLALVLSKDGQP 286 (448)
T ss_pred EeecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEE-ecCCC--CCcCCeeECC--CCCEEEEEEeCCCCe
Confidence 334455677889999999988876442 368899998876533 22222 2245789999 9997764 566665
Q ss_pred -EEEEeCCCCCCCCCCeeeeecceeeEEEeeeeeccccccccCCCCcceeeccCCceeeecCCCCCCceeccCCCceEEE
Q 021291 88 -VKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAV 166 (314)
Q Consensus 88 -v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (314)
|.++|+.+++... +....... ...+|+|+|+.++.+
T Consensus 287 ~Iy~~dl~tg~~~~-----lt~~~~~~--------------------------------------~~p~wSpDG~~I~f~ 323 (448)
T PRK04792 287 EIYVVDIATKALTR-----ITRHRAID--------------------------------------TEPSWHPDGKSLIFT 323 (448)
T ss_pred EEEEEECCCCCeEE-----CccCCCCc--------------------------------------cceEECCCCCEEEEE
Confidence 7777887764311 11110000 004599999877664
Q ss_pred eecCc--CeEEEEecCCCceeeeecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEeecCCc--EEEEEccCCC
Q 021291 167 AGEQL--SEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGS--ILVWDIRNPG 242 (314)
Q Consensus 167 ~g~~d--~~i~vwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~--i~vwd~~~~~ 242 (314)
+ ..+ ..|.++|+.+++... +... ++ ...... |+|+ |+.++++...++. |.++|+.+ +
T Consensus 324 s-~~~g~~~Iy~~dl~~g~~~~-Lt~~------g~------~~~~~~-~SpD---G~~l~~~~~~~g~~~I~~~dl~~-g 384 (448)
T PRK04792 324 S-ERGGKPQIYRVNLASGKVSR-LTFE------GE------QNLGGS-ITPD---GRSMIMVNRTNGKFNIARQDLET-G 384 (448)
T ss_pred E-CCCCCceEEEEECCCCCEEE-EecC------CC------CCcCee-ECCC---CCEEEEEEecCCceEEEEEECCC-C
Confidence 3 333 357777887766432 2210 11 112234 9998 5534444444553 55567765 4
Q ss_pred CceEeeecCCcceEEEEEeCCCCeEEEecC-CCc--EEEEecCCCeeeEeeeeeeecCCCceeceeecc
Q 021291 243 IPLTAMKVHLEPVLCLSIDESCNGGISGGA-DQK--IVLYNLDHSTYVLFGIGFVCDQEGNKFGTTWHI 308 (314)
Q Consensus 243 ~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~-dg~--i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~w~~ 308 (314)
.. ..+... .......|+|+|+.|+..+. +|. +.+++.+ ++...... .+.+..-...|.+
T Consensus 385 ~~-~~lt~~-~~d~~ps~spdG~~I~~~~~~~g~~~l~~~~~~-G~~~~~l~----~~~g~~~~p~Wsp 446 (448)
T PRK04792 385 AM-QVLTST-RLDESPSVAPNGTMVIYSTTYQGKQVLAAVSID-GRFKARLP----AGQGEVKSPAWSP 446 (448)
T ss_pred Ce-EEccCC-CCCCCceECCCCCEEEEEEecCCceEEEEEECC-CCceEECc----CCCCCcCCCccCC
Confidence 33 333322 12234579999998766554 333 6667764 33333221 2344444556654
No 239
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.37 E-value=5e-11 Score=93.41 Aligned_cols=183 Identities=16% Similarity=0.151 Sum_probs=126.3
Q ss_pred CceeEEEEcc-CCCEEEEecCC--CeEEEEeCCCCeEEEEEeccCC-------cccEEEEEEcccCCCCeEEEeecCCeE
Q 021291 19 ASVTDVCFHQ-TKPILFAGTTG--GELRIWDTVQHRTVSSSWVHSA-------AHGIVSVATGPSIGLNKVISQGRDGTV 88 (314)
Q Consensus 19 ~~v~~~~~~~-~~~~l~s~~~d--g~v~iwd~~~~~~~~~~~~~~~-------~~~v~~~~~~~~~~~~~l~s~~~dg~v 88 (314)
..+..+.-++ +..++|+|+.. ..+.|||++..+.+..-+.-.. +-.++++.|.+......|+++..-+.|
T Consensus 149 ~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~~qiw~aKNvpnD~L~LrVPvW~tdi~Fl~g~~~~~fat~T~~hqv 228 (412)
T KOG3881|consen 149 PGLYDVRQTDTDPYIVATGGKENINELKIWDLEQSKQIWSAKNVPNDRLGLRVPVWITDIRFLEGSPNYKFATITRYHQV 228 (412)
T ss_pred CceeeeccCCCCCceEecCchhcccceeeeecccceeeeeccCCCCccccceeeeeeccceecCCCCCceEEEEecceeE
Confidence 3455565555 44577789999 8899999998865544332111 134678889882227899999999999
Q ss_pred EEEeCCCCCCCCCCeeeeecceeeEEEeeeeeccccccccCCCCcceeeccCCceeeecCCCCCCceeccCCCceEEEee
Q 021291 89 KCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAG 168 (314)
Q Consensus 89 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 168 (314)
++||.+.++ +|+..+......... +...|.++.++ +|
T Consensus 229 R~YDt~~qR---RPV~~fd~~E~~is~--------------------------------------~~l~p~gn~Iy--~g 265 (412)
T KOG3881|consen 229 RLYDTRHQR---RPVAQFDFLENPISS--------------------------------------TGLTPSGNFIY--TG 265 (412)
T ss_pred EEecCcccC---cceeEeccccCccee--------------------------------------eeecCCCcEEE--Ee
Confidence 999999664 445444433222111 33557887655 46
Q ss_pred cCcCeEEEEecCCCceeee-ecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEeecCCcEEEEEccCCCCceEe
Q 021291 169 EQLSEVEIWDLNTAERCTR-LHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTA 247 (314)
Q Consensus 169 ~~d~~i~vwd~~~~~~~~~-~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~~~ 247 (314)
..-+.+..||++.+..... +. + ..+.+.++. .+|. ++ ++++++.|..|+|+|+.+ .+++..
T Consensus 266 n~~g~l~~FD~r~~kl~g~~~k--------g----~tGsirsih-~hp~---~~-~las~GLDRyvRIhD~kt-rkll~k 327 (412)
T KOG3881|consen 266 NTKGQLAKFDLRGGKLLGCGLK--------G----ITGSIRSIH-CHPT---HP-VLASCGLDRYVRIHDIKT-RKLLHK 327 (412)
T ss_pred cccchhheecccCceeeccccC--------C----ccCCcceEE-EcCC---Cc-eEEeeccceeEEEeeccc-chhhhh
Confidence 6679999999999987766 44 2 467888887 8887 34 999999999999999998 666544
Q ss_pred eecCCcceEEEEEeCC
Q 021291 248 MKVHLEPVLCLSIDES 263 (314)
Q Consensus 248 ~~~h~~~v~~~~~~~~ 263 (314)
... ...++++-+.++
T Consensus 328 vYv-Ks~lt~il~~~~ 342 (412)
T KOG3881|consen 328 VYV-KSRLTFILLRDD 342 (412)
T ss_pred hhh-hccccEEEecCC
Confidence 332 445566666443
No 240
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.36 E-value=4.7e-12 Score=103.76 Aligned_cols=220 Identities=15% Similarity=0.193 Sum_probs=145.7
Q ss_pred ceEEecCCCCceeEEEEccCCCEEEEecCCCeEEEEeCCC-------CeEEEEEeccCCcccEEEEEEcccCCCCeEEEe
Q 021291 10 PVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQ-------HRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQ 82 (314)
Q Consensus 10 ~~~~l~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~-------~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~ 82 (314)
.+..+.||+..|..++--.+.+-+++++.|.+|++|.++. ..+..+++.|+ .+|.++.|.. +.+.+++
T Consensus 727 rL~nf~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHk--k~i~~igfL~--~lr~i~S- 801 (1034)
T KOG4190|consen 727 RLCNFTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHK--KPIHDIGFLA--DLRSIAS- 801 (1034)
T ss_pred eeecccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEhhhcc--Ccccceeeee--ccceeee-
Confidence 3567889999999988766777899999999999999863 24677788888 4599999998 7556655
Q ss_pred ecCCeEEEEeCCCCCCCCCCeeeeecceeeEEEeeeeeccccccccCCCCcceeeccCCceeeecCCCCCCceeccCCCc
Q 021291 83 GRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPK 162 (314)
Q Consensus 83 ~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (314)
.||-|++||.--++...+.....+....... .++-.-...
T Consensus 802 -cD~giHlWDPFigr~Laq~~dapk~~a~~~i---------------------------------------kcl~nv~~~ 841 (1034)
T KOG4190|consen 802 -CDGGIHLWDPFIGRLLAQMEDAPKEGAGGNI---------------------------------------KCLENVDRH 841 (1034)
T ss_pred -ccCcceeecccccchhHhhhcCcccCCCcee---------------------------------------EecccCcch
Confidence 4788999998776543311111111111100 011111244
Q ss_pred eEEEeecCcCeEEEEecCCCceeeeecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEeecCCcEEEEEccCCC
Q 021291 163 YMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPG 242 (314)
Q Consensus 163 ~~~~~g~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~ 242 (314)
++++.++...+|+++|.+..+-...++. ......++...+++ ..|. |+ .++++-.+|.|.+.|.++ +
T Consensus 842 iliAgcsaeSTVKl~DaRsce~~~E~kV-------cna~~Pna~~R~ia-Va~~---GN-~lAa~LSnGci~~LDaR~-G 908 (1034)
T KOG4190|consen 842 ILIAGCSAESTVKLFDARSCEWTCELKV-------CNAPGPNALTRAIA-VADK---GN-KLAAALSNGCIAILDARN-G 908 (1034)
T ss_pred heeeeccchhhheeeecccccceeeEEe-------ccCCCCchheeEEE-eccC---cc-hhhHHhcCCcEEEEecCC-C
Confidence 5555557789999999999887666652 11122344566665 7776 55 899999999999999998 7
Q ss_pred CceEeeecCCcceEEEEEeCCCCeEEEecCCCcEEE-EecCCCeeeE
Q 021291 243 IPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVL-YNLDHSTYVL 288 (314)
Q Consensus 243 ~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~i-w~~~~~~~~~ 288 (314)
..+..+....-....++ .|..+.|+....|.++.+ |..-.+...+
T Consensus 909 ~vINswrpmecdllqla-apsdq~L~~saldHslaVnWhaldgimh~ 954 (1034)
T KOG4190|consen 909 KVINSWRPMECDLLQLA-APSDQALAQSALDHSLAVNWHALDGIMHL 954 (1034)
T ss_pred ceeccCCcccchhhhhc-CchhHHHHhhcccceeEeeehhcCCeeee
Confidence 77766554333333333 344456677777777777 7665554444
No 241
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.33 E-value=8.1e-10 Score=94.02 Aligned_cols=196 Identities=15% Similarity=0.090 Sum_probs=119.2
Q ss_pred CCeEEEEeCCCCeEEEEEeccCCcccEEEEEEcccCCCCeEEEeecC---CeEEEEeCCCCCCCCCCeeeeecceeeEEE
Q 021291 39 GGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRD---GTVKCWDIENGGLSSNPSLTIKTNSYHFCK 115 (314)
Q Consensus 39 dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d---g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~ 115 (314)
...|.++|..... ...+..+. ..+...+|+| ++++|+.++.+ ..|++||+.+++... +...... ...
T Consensus 169 ~~~l~~~d~~g~~-~~~l~~~~--~~~~~p~~Sp--dg~~la~~~~~~~~~~i~v~d~~~g~~~~--~~~~~~~--~~~- 238 (417)
T TIGR02800 169 RYELQVADYDGAN-PQTITRSR--EPILSPAWSP--DGQKLAYVSFESGKPEIYVQDLATGQREK--VASFPGM--NGA- 238 (417)
T ss_pred cceEEEEcCCCCC-CEEeecCC--CceecccCCC--CCCEEEEEEcCCCCcEEEEEECCCCCEEE--eecCCCC--ccc-
Confidence 3468888875433 34444454 3488999999 99999877654 479999998874311 1000000 000
Q ss_pred eeeeeccccccccCCCCcceeeccCCceeeecCCCCCCceeccCCCceEEEeecCc--CeEEEEecCCCceeeeeccccc
Q 021291 116 LSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQL--SEVEIWDLNTAERCTRLHQNSC 193 (314)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d--~~i~vwd~~~~~~~~~~~~~~~ 193 (314)
.+|+|+|+.++++ .+.+ ..|++||+.++... .+.
T Consensus 239 --------------------------------------~~~spDg~~l~~~-~~~~~~~~i~~~d~~~~~~~-~l~---- 274 (417)
T TIGR02800 239 --------------------------------------PAFSPDGSKLAVS-LSKDGNPDIYVMDLDGKQLT-RLT---- 274 (417)
T ss_pred --------------------------------------eEECCCCCEEEEE-ECCCCCccEEEEECCCCCEE-ECC----
Confidence 4599999877653 3333 46899998876543 232
Q ss_pred CCCCCcCCCCCceeeeEEEecCCCCCCceEEEEeecCC--cEEEEEccCCCCceEeeecCCcceEEEEEeCCCCeEEEec
Q 021291 194 GGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDG--SILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGG 271 (314)
Q Consensus 194 ~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg--~i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s 271 (314)
.+. ....... |+|+ |+.++++...++ .|+++|+.. ++ ...+..+...+..+.|+|++++|+.++
T Consensus 275 ----~~~----~~~~~~~-~s~d---g~~l~~~s~~~g~~~iy~~d~~~-~~-~~~l~~~~~~~~~~~~spdg~~i~~~~ 340 (417)
T TIGR02800 275 ----NGP----GIDTEPS-WSPD---GKSIAFTSDRGGSPQIYMMDADG-GE-VRRLTFRGGYNASPSWSPDGDLIAFVH 340 (417)
T ss_pred ----CCC----CCCCCEE-ECCC---CCEEEEEECCCCCceEEEEECCC-CC-EEEeecCCCCccCeEECCCCCEEEEEE
Confidence 121 1222344 9987 552334443344 577788775 33 344555566778889999999998887
Q ss_pred CCC---cEEEEecCCCeeeEee-----eeeeecCCCcee
Q 021291 272 ADQ---KIVLYNLDHSTYVLFG-----IGFVCDQEGNKF 302 (314)
Q Consensus 272 ~dg---~i~iw~~~~~~~~~~~-----~~~~~~~~~~~~ 302 (314)
.++ .|.+||+.++...... ...+++|+|..+
T Consensus 341 ~~~~~~~i~~~d~~~~~~~~l~~~~~~~~p~~spdg~~l 379 (417)
T TIGR02800 341 REGGGFNIAVMDLDGGGERVLTDTGLDESPSFAPNGRMI 379 (417)
T ss_pred ccCCceEEEEEeCCCCCeEEccCCCCCCCceECCCCCEE
Confidence 776 7889998875433221 122455666544
No 242
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.32 E-value=6.2e-10 Score=91.87 Aligned_cols=194 Identities=15% Similarity=0.136 Sum_probs=130.8
Q ss_pred cCCCEEEEecCCCeEEEEeCCCCeEEEEEeccCC-cccEEEEEE------cc------------cCCCCeEEEeecCCeE
Q 021291 28 QTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSA-AHGIVSVAT------GP------------SIGLNKVISQGRDGTV 88 (314)
Q Consensus 28 ~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~-~~~v~~~~~------~~------------~~~~~~l~s~~~dg~v 88 (314)
|-..++|....||.+++||..+++....+....+ .+..++..| +| ..+...++-|...|.|
T Consensus 3 ~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~v 82 (541)
T KOG4547|consen 3 PALDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGSV 82 (541)
T ss_pred chhheEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCccE
Confidence 3467899999999999999999887776643211 012334444 22 1133467778888999
Q ss_pred EEEeCCCCCCCCCCeeeeecceeeEEEeeeeeccccccccCCCCcceeeccCCceeeecCCCCCCceeccCCCceEEEee
Q 021291 89 KCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAG 168 (314)
Q Consensus 89 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 168 (314)
.+|++..+++.. .+....+...... +.++.+-. .+- ++
T Consensus 83 ~~ys~~~g~it~--~~st~~h~~~v~~--------------------------------------~~~~~~~~-ciy-S~ 120 (541)
T KOG4547|consen 83 LLYSVAGGEITA--KLSTDKHYGNVNE--------------------------------------ILDAQRLG-CIY-SV 120 (541)
T ss_pred EEEEecCCeEEE--EEecCCCCCccee--------------------------------------eecccccC-ceE-ec
Confidence 999999887533 1111111111110 11222222 333 56
Q ss_pred cCcCeEEEEecCCCceeeeecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEeecCCcEEEEEccCCCCceEee
Q 021291 169 EQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAM 248 (314)
Q Consensus 169 ~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~~~~ 248 (314)
+.|+.+..|+......++.+.. ....+.+++ ++|| |. .+++++ +.|++||+.+ ++.+..+
T Consensus 121 ~ad~~v~~~~~~~~~~~~~~~~------------~~~~~~sl~-is~D---~~-~l~~as--~~ik~~~~~~-kevv~~f 180 (541)
T KOG4547|consen 121 GADLKVVYILEKEKVIIRIWKE------------QKPLVSSLC-ISPD---GK-ILLTAS--RQIKVLDIET-KEVVITF 180 (541)
T ss_pred CCceeEEEEecccceeeeeecc------------CCCccceEE-EcCC---CC-EEEecc--ceEEEEEccC-ceEEEEe
Confidence 6689999999999998888773 234566666 9998 44 777775 5899999999 9999999
Q ss_pred ecCCcceEEEEEeCC-----CCeEE-EecCCCcEEEEecCC
Q 021291 249 KVHLEPVLCLSIDES-----CNGGI-SGGADQKIVLYNLDH 283 (314)
Q Consensus 249 ~~h~~~v~~~~~~~~-----~~~l~-s~s~dg~i~iw~~~~ 283 (314)
.+|.++|.++.|..+ |.++. +...+.-+.+|-++.
T Consensus 181 tgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~~ 221 (541)
T KOG4547|consen 181 TGHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVEK 221 (541)
T ss_pred cCCCcceEEEEEEEeccccccceeeeccccccceeEEEEEc
Confidence 999999999999544 55554 444566788898765
No 243
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.32 E-value=1.8e-11 Score=93.42 Aligned_cols=249 Identities=12% Similarity=0.184 Sum_probs=142.6
Q ss_pred CCceeEEEEccCCCEEEEecCCCeEEEEeCCCCe-----EEEEEeccCC----------cccEEEEEEcccCCCCeEEEe
Q 021291 18 RASVTDVCFHQTKPILFAGTTGGELRIWDTVQHR-----TVSSSWVHSA----------AHGIVSVATGPSIGLNKVISQ 82 (314)
Q Consensus 18 ~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~-----~~~~~~~~~~----------~~~v~~~~~~~~~~~~~l~s~ 82 (314)
.+.|+++.|...|.||++|...|.|.+|.-+... ....++.|.. ...|..+.|........|+..
T Consensus 26 ad~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLls 105 (460)
T COG5170 26 ADKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLLS 105 (460)
T ss_pred cceeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEEe
Confidence 4679999999999999999999999999865432 2233455432 134788888763334567777
Q ss_pred ecCCeEEEEeCCCCCCCCCCeeeeecceeeEEEeeeeeccccc-----cccCCCCcceeeccCCceeeecCCCCCC-cee
Q 021291 83 GRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYAN-----AKQANEPKDCYEREVGETVDTDSLCDSK-DDV 156 (314)
Q Consensus 83 ~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 156 (314)
+.|.+|++|.+....+.. + ..........++.+.+... ...-.....++...+.+......+.|-. +++
T Consensus 106 tNdktiKlWKiyeknlk~--v---a~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~ 180 (460)
T COG5170 106 TNDKTIKLWKIYEKNLKV--V---AENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISF 180 (460)
T ss_pred cCCceeeeeeeecccchh--h---hccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeee
Confidence 889999999998764321 0 0000000000111111000 0000001111111111111111111222 778
Q ss_pred ccCCCceEEEeecCcCeEEEEecCCCce---eeeecccccCCCCCcC-CCCCceeeeEEEecCCCCCCceEEEEeecCCc
Q 021291 157 PAEGPKYMAVAGEQLSEVEIWDLNTAER---CTRLHQNSCGGSPNFS-SKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGS 232 (314)
Q Consensus 157 ~~~~~~~~~~~g~~d~~i~vwd~~~~~~---~~~~~~~~~~~~~~h~-~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~ 232 (314)
..|.+.++ ++. |=.|.+|++.-... +..++ .|. .+....+++.. |+|... ..+.-.+..|.
T Consensus 181 NsD~et~l--SaD-dLrINLWnl~i~D~sFnIVDiK--------P~nmeeLteVItSae-Fhp~~c---n~fmYSsSkG~ 245 (460)
T COG5170 181 NSDKETLL--SAD-DLRINLWNLEIIDGSFNIVDIK--------PHNMEELTEVITSAE-FHPEMC---NVFMYSSSKGE 245 (460)
T ss_pred cCchheee--ecc-ceeeeeccccccCCceEEEecc--------CccHHHHHHHHhhcc-cCHhHc---ceEEEecCCCc
Confidence 88877665 443 77899999875442 22233 221 12233456665 999743 27777888999
Q ss_pred EEEEEccCCCCc-----eEe----------eecCCcceEEEEEeCCCCeEEEecCCCcEEEEecCCCeee
Q 021291 233 ILVWDIRNPGIP-----LTA----------MKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTYV 287 (314)
Q Consensus 233 i~vwd~~~~~~~-----~~~----------~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~iw~~~~~~~~ 287 (314)
|++-|+|...-+ +.. +.+-...|..+.|+++|+++++-+. -+|++||++..+..
T Consensus 246 Ikl~DlRq~alcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdy-ltvkiwDvnm~k~p 314 (460)
T COG5170 246 IKLNDLRQSALCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDY-LTVKIWDVNMAKNP 314 (460)
T ss_pred EEehhhhhhhhccCchhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEecc-ceEEEEecccccCC
Confidence 999999842111 111 1122346888999999998887755 47999999877643
No 244
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.32 E-value=1.2e-10 Score=101.91 Aligned_cols=198 Identities=15% Similarity=0.211 Sum_probs=140.1
Q ss_pred ceeEEEEccCCCEEEEecCCCeEEEEeCCCCeEEEEEeccCCcc--cEEEEEEcccCCCCeEEEeecCCeEEEEeCCCCC
Q 021291 20 SVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAH--GIVSVATGPSIGLNKVISQGRDGTVKCWDIENGG 97 (314)
Q Consensus 20 ~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~--~v~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~ 97 (314)
.|....+.-+...++.++.+..+.+||...+.....+......- ...-+-+++ +.-++++|+.-+.|.+|+.....
T Consensus 89 wi~g~~l~~e~k~i~l~~~~ns~~i~d~~~~~~~~~i~~~er~~l~~~~~~g~s~--~~~~i~~gsv~~~iivW~~~~dn 166 (967)
T KOG0974|consen 89 WIFGAKLFEENKKIALVTSRNSLLIRDSKNSSVLSKIQSDERCTLYSSLIIGDSA--EELYIASGSVFGEIIVWKPHEDN 166 (967)
T ss_pred cccccchhhhcceEEEEEcCceEEEEecccCceehhcCCCceEEEEeEEEEeccC--cEEEEEeccccccEEEEeccccC
Confidence 34444444566688888888999999998877666655433110 011222344 55688899999999999987221
Q ss_pred CCCCCeeeeecceeeEEEeeeeeccccccccCCCCcceeeccCCceeeecCCCCCCceeccCCCceEEEeecCcCeEEEE
Q 021291 98 LSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQLSEVEIW 177 (314)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~vw 177 (314)
.|. .+..+.. ..|. +.++-+|.+++ +.++|+++++|
T Consensus 167 ---~p~-~l~GHeG--~iF~------------------------------------i~~s~dg~~i~--s~SdDRsiRlW 202 (967)
T KOG0974|consen 167 ---KPI-RLKGHEG--SIFS------------------------------------IVTSLDGRYIA--SVSDDRSIRLW 202 (967)
T ss_pred ---Ccc-eecccCC--ceEE------------------------------------EEEccCCcEEE--EEecCcceeee
Confidence 112 1111111 1111 45777887554 67789999999
Q ss_pred ecCCCceee-eecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEeecCCcEEEEEccCCCCceEeeecCCc-ce
Q 021291 178 DLNTAERCT-RLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHLE-PV 255 (314)
Q Consensus 178 d~~~~~~~~-~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~h~~-~v 255 (314)
++.+.+... ..- +| ...++.+. |.|+ .++++++|-+.++|+.. +..+..+.+|.. .|
T Consensus 203 ~i~s~~~~~~~~f--------gH----saRvw~~~-~~~n------~i~t~gedctcrvW~~~--~~~l~~y~~h~g~~i 261 (967)
T KOG0974|consen 203 PIDSREVLGCTGF--------GH----SARVWACC-FLPN------RIITVGEDCTCRVWGVN--GTQLEVYDEHSGKGI 261 (967)
T ss_pred ecccccccCcccc--------cc----cceeEEEE-eccc------eeEEeccceEEEEEecc--cceehhhhhhhhcce
Confidence 999887654 222 56 55788887 9987 89999999999999776 566668888865 69
Q ss_pred EEEEEeCCCCeEEEecCCCcEEEEecCCC
Q 021291 256 LCLSIDESCNGGISGGADQKIVLYNLDHS 284 (314)
Q Consensus 256 ~~~~~~~~~~~l~s~s~dg~i~iw~~~~~ 284 (314)
+.++..++...++|++.|+.+++|++...
T Consensus 262 w~~~~~~~~~~~vT~g~Ds~lk~~~l~~r 290 (967)
T KOG0974|consen 262 WKIAVPIGVIIKVTGGNDSTLKLWDLNGR 290 (967)
T ss_pred eEEEEcCCceEEEeeccCcchhhhhhhcc
Confidence 99999999989999999999999998654
No 245
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=99.31 E-value=3e-08 Score=80.33 Aligned_cols=242 Identities=9% Similarity=0.042 Sum_probs=139.1
Q ss_pred EccCCCEEEEecC----------CCeEEEEeCCCCeEEEEEeccCCc-----ccEEEEEEcccCCCCeEEEee-c-CCeE
Q 021291 26 FHQTKPILFAGTT----------GGELRIWDTVQHRTVSSSWVHSAA-----HGIVSVATGPSIGLNKVISQG-R-DGTV 88 (314)
Q Consensus 26 ~~~~~~~l~s~~~----------dg~v~iwd~~~~~~~~~~~~~~~~-----~~v~~~~~~~~~~~~~l~s~~-~-dg~v 88 (314)
++|||+.|+.+.. +..|.+||..+.+.+..+.....+ ..-..++++| ||++|+... . +..|
T Consensus 53 ~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~~~~~~~~~~ls~--dgk~l~V~n~~p~~~V 130 (352)
T TIGR02658 53 VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFLVGTYPWMTSLTP--DNKTLLFYQFSPSPAV 130 (352)
T ss_pred ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhhccCccceEEECC--CCCEEEEecCCCCCEE
Confidence 8999988876654 789999999999999888753321 1234789999 999888766 3 6899
Q ss_pred EEEeCCCCCCCCCCeeeeecceeeEEEeeeee-ccccccccCCCCcceeeccC-Cceeeec---CCCCCC-----ceecc
Q 021291 89 KCWDIENGGLSSNPSLTIKTNSYHFCKLSLVK-EPYANAKQANEPKDCYEREV-GETVDTD---SLCDSK-----DDVPA 158 (314)
Q Consensus 89 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~-~~~~~~~---~~~~~~-----~~~~~ 158 (314)
.+.|+.+++.+. ++.... |..-... ..........+....+.+.. ++..... +..... -.+.+
T Consensus 131 ~VvD~~~~kvv~----ei~vp~---~~~vy~t~e~~~~~~~~Dg~~~~v~~d~~g~~~~~~~~vf~~~~~~v~~rP~~~~ 203 (352)
T TIGR02658 131 GVVDLEGKAFVR----MMDVPD---CYHIFPTANDTFFMHCRDGSLAKVGYGTKGNPKIKPTEVFHPEDEYLINHPAYSN 203 (352)
T ss_pred EEEECCCCcEEE----EEeCCC---CcEEEEecCCccEEEeecCceEEEEecCCCceEEeeeeeecCCccccccCCceEc
Confidence 999999987654 222211 1110000 00000111111111111111 1100000 001000 13455
Q ss_pred -CCCceEEEeecCcCeEEEEecCCCc-----eeeeecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEee----
Q 021291 159 -EGPKYMAVAGEQLSEVEIWDLNTAE-----RCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGY---- 228 (314)
Q Consensus 159 -~~~~~~~~~g~~d~~i~vwd~~~~~-----~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~---- 228 (314)
+|..+++ +. .|+|.+.|+.... ....+.... .-.....+....++ ++|+ ++.+++...
T Consensus 204 ~dg~~~~v-s~--eG~V~~id~~~~~~~~~~~~~~~~~~~-----~~~~wrP~g~q~ia-~~~d---g~~lyV~~~~~~~ 271 (352)
T TIGR02658 204 KSGRLVWP-TY--TGKIFQIDLSSGDAKFLPAIEAFTEAE-----KADGWRPGGWQQVA-YHRA---RDRIYLLADQRAK 271 (352)
T ss_pred CCCcEEEE-ec--CCeEEEEecCCCcceecceeeeccccc-----cccccCCCcceeEE-EcCC---CCEEEEEecCCcc
Confidence 6765553 33 3999999965432 222221100 00000111222254 9988 442333231
Q ss_pred -----cCCcEEEEEccCCCCceEeeecCCcceEEEEEeCCCC-eEEEec-CCCcEEEEecCCCeeeEee
Q 021291 229 -----EDGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCN-GGISGG-ADQKIVLYNLDHSTYVLFG 290 (314)
Q Consensus 229 -----~dg~i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~-~l~s~s-~dg~i~iw~~~~~~~~~~~ 290 (314)
..+.|.++|..+ .+.+..+.. ...+..+++++|++ +|++.. .++.|.+.|..+++.+..+
T Consensus 272 ~thk~~~~~V~ViD~~t-~kvi~~i~v-G~~~~~iavS~Dgkp~lyvtn~~s~~VsViD~~t~k~i~~i 338 (352)
T TIGR02658 272 WTHKTASRFLFVVDAKT-GKRLRKIEL-GHEIDSINVSQDAKPLLYALSTGDKTLYIFDAETGKELSSV 338 (352)
T ss_pred ccccCCCCEEEEEECCC-CeEEEEEeC-CCceeeEEECCCCCeEEEEeCCCCCcEEEEECcCCeEEeee
Confidence 225799999998 787877764 46889999999999 777655 6788999999999887764
No 246
>PRK01029 tolB translocation protein TolB; Provisional
Probab=99.31 E-value=4.3e-09 Score=89.03 Aligned_cols=227 Identities=10% Similarity=0.084 Sum_probs=123.4
Q ss_pred ecCCCCceeEEEEccCCCE---EEEecCC--CeEEEEeCCCCeEEEEEeccCCcccEEEEEEcccCCCCeEEEeec-CC-
Q 021291 14 LRGHRASVTDVCFHQTKPI---LFAGTTG--GELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGR-DG- 86 (314)
Q Consensus 14 l~~h~~~v~~~~~~~~~~~---l~s~~~d--g~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~-dg- 86 (314)
+......+..-+|+|||+. +++...+ ..|.+.++.+++...... .. ......+|+| ||+.|+..+. +|
T Consensus 180 lt~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~lt~-~~--g~~~~p~wSP--DG~~Laf~s~~~g~ 254 (428)
T PRK01029 180 LTQEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKKILA-LQ--GNQLMPTFSP--RKKLLAFISDRYGN 254 (428)
T ss_pred cccCCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCceEeec-CC--CCccceEECC--CCCEEEEEECCCCC
Confidence 4444556677899999974 2244433 368888988775443322 23 2256789999 9988886543 23
Q ss_pred ---eEEEEeCCCCCCCCCCeeeeecceeeEEEeeeeeccccccccCCCCcceeeccCCceeeecCCCCCCceeccCCCce
Q 021291 87 ---TVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKY 163 (314)
Q Consensus 87 ---~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (314)
.+.+|++..+.... ...+...... .....+|+|||+.+
T Consensus 255 ~di~~~~~~~~~g~~g~--~~~lt~~~~~-------------------------------------~~~~p~wSPDG~~L 295 (428)
T PRK01029 255 PDLFIQSFSLETGAIGK--PRRLLNEAFG-------------------------------------TQGNPSFSPDGTRL 295 (428)
T ss_pred cceeEEEeecccCCCCc--ceEeecCCCC-------------------------------------CcCCeEECCCCCEE
Confidence 34446665431100 0000000000 00004699999877
Q ss_pred EEEeecCcCeEEEE--ecCC-CceeeeecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEeecC--CcEEEEEc
Q 021291 164 MAVAGEQLSEVEIW--DLNT-AERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYED--GSILVWDI 238 (314)
Q Consensus 164 ~~~~g~~d~~i~vw--d~~~-~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~d--g~i~vwd~ 238 (314)
+.+ ...+|...+| ++.. +.....+. .+ ........ |+|| |+.++++...+ ..|.+||+
T Consensus 296 af~-s~~~g~~~ly~~~~~~~g~~~~~lt--------~~----~~~~~~p~-wSPD---G~~Laf~~~~~g~~~I~v~dl 358 (428)
T PRK01029 296 VFV-SNKDGRPRIYIMQIDPEGQSPRLLT--------KK----YRNSSCPA-WSPD---GKKIAFCSVIKGVRQICVYDL 358 (428)
T ss_pred EEE-ECCCCCceEEEEECcccccceEEec--------cC----CCCcccee-ECCC---CCEEEEEEcCCCCcEEEEEEC
Confidence 764 3345644444 4432 22233333 11 11234455 9998 55233344333 36999999
Q ss_pred cCCCCceEeeecCCcceEEEEEeCCCCeEEEec-C--CCcEEEEecCCCeeeEeeeeeeecCCCceeceeecc
Q 021291 239 RNPGIPLTAMKVHLEPVLCLSIDESCNGGISGG-A--DQKIVLYNLDHSTYVLFGIGFVCDQEGNKFGTTWHI 308 (314)
Q Consensus 239 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s-~--dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~w~~ 308 (314)
.+ ++. ..+......+....|+|||+.|+..+ . ...|.++|++.++..... ...|......|-+
T Consensus 359 ~~-g~~-~~Lt~~~~~~~~p~wSpDG~~L~f~~~~~g~~~L~~vdl~~g~~~~Lt-----~~~g~~~~p~Ws~ 424 (428)
T PRK01029 359 AT-GRD-YQLTTSPENKESPSWAIDSLHLVYSAGNSNESELYLISLITKKTRKIV-----IGSGEKRFPSWGA 424 (428)
T ss_pred CC-CCe-EEccCCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEee-----cCCCcccCceecC
Confidence 86 443 34443344667899999999876433 2 356888898877643321 1334444455654
No 247
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=99.30 E-value=2.1e-10 Score=88.63 Aligned_cols=250 Identities=14% Similarity=0.198 Sum_probs=153.0
Q ss_pred CceEEecCCCCceeEEEEccCCCEEEEecCCCeEEEEeCCC-CeEEEEEeccCCcccEEEEEEcccCCCCeEEEeecCCe
Q 021291 9 DPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQ-HRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGT 87 (314)
Q Consensus 9 ~~~~~l~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~ 87 (314)
.+++.++||.+.|++...-|...-+++.+.|.++|||--.+ ++.-..+. |.-+.++.++.+.+ +...|+.|-..|+
T Consensus 15 ~ll~~~eG~~d~vn~~~l~~~e~gv~~~s~drtvrv~lkrds~q~wpsI~-~~mP~~~~~~~y~~--e~~~L~vg~~ngt 91 (404)
T KOG1409|consen 15 ELLSKIEGSQDDVNAAILIPKEEGVISVSEDRTVRVWLKRDSGQYWPSIY-HYMPSPCSAMEYVS--ESRRLYVGQDNGT 91 (404)
T ss_pred hhhhhhcCchhhhhhheeccCCCCeEEccccceeeeEEeccccccCchhh-hhCCCCceEeeeec--cceEEEEEEecce
Confidence 56788999999999999888777799999999999996433 33333332 44446799999999 8889999999999
Q ss_pred EEEEeCCCC----CCCCCCeeeeecceeeEEEeeeeeccccccccCC-CCcceeeccCCceeeecCCCCCCceeccCC--
Q 021291 88 VKCWDIENG----GLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQAN-EPKDCYEREVGETVDTDSLCDSKDDVPAEG-- 160 (314)
Q Consensus 88 v~iwd~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 160 (314)
+.-+.+..- ...+ .+..+........++. .+........ .....-..+.+..+..... .+...+.
T Consensus 92 vtefs~sedfnkm~~~r--~~~~h~~~v~~~if~~--~~e~V~s~~~dk~~~~hc~e~~~~lg~Y~~----~~~~t~~~~ 163 (404)
T KOG1409|consen 92 VTEFALSEDFNKMTFLK--DYLAHQARVSAIVFSL--THEWVLSTGKDKQFAWHCTESGNRLGGYNF----ETPASALQF 163 (404)
T ss_pred EEEEEhhhhhhhcchhh--hhhhhhcceeeEEecC--CceeEEEeccccceEEEeeccCCcccceEe----eccCCCCce
Confidence 988876431 1111 0111111111111111 1110000000 0000111111110000000 0111110
Q ss_pred CceEEEeecCcCeEEEEecC--CCceeeeecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEeecCCcEEEEEc
Q 021291 161 PKYMAVAGEQLSEVEIWDLN--TAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDI 238 (314)
Q Consensus 161 ~~~~~~~g~~d~~i~vwd~~--~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~ 238 (314)
....+..|...|.|.+-.+. ....+.++. +| .+.+.++. |.|. .+ .+++|..|..+.+||+
T Consensus 164 d~~~~fvGd~~gqvt~lr~~~~~~~~i~~~~--------~h----~~~~~~l~-Wd~~---~~-~LfSg~~d~~vi~wdi 226 (404)
T KOG1409|consen 164 DALYAFVGDHSGQITMLKLEQNGCQLITTFN--------GH----TGEVTCLK-WDPG---QR-LLFSGASDHSVIMWDI 226 (404)
T ss_pred eeEEEEecccccceEEEEEeecCCceEEEEc--------Cc----ccceEEEE-EcCC---Cc-EEEeccccCceEEEec
Confidence 11122345555655554433 344566666 66 45777887 9986 33 8999999999999999
Q ss_pred cCCCCceEeeecCCcceEEEEEeCCCCeEEEecCCCcEEEEecCCCee
Q 021291 239 RNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTY 286 (314)
Q Consensus 239 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~iw~~~~~~~ 286 (314)
--......++.+|...|..+..-+.-+.|++++.||.|.+|+++..+.
T Consensus 227 gg~~g~~~el~gh~~kV~~l~~~~~t~~l~S~~edg~i~~w~mn~~r~ 274 (404)
T KOG1409|consen 227 GGRKGTAYELQGHNDKVQALSYAQHTRQLISCGEDGGIVVWNMNVKRV 274 (404)
T ss_pred cCCcceeeeeccchhhhhhhhhhhhheeeeeccCCCeEEEEeccceee
Confidence 854456678889999999999977778899999999999999986543
No 248
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=99.28 E-value=5.1e-09 Score=86.13 Aligned_cols=257 Identities=12% Similarity=0.145 Sum_probs=152.6
Q ss_pred CCceeEEEEccCCCEEEEecCCCeEEEEeCCCCeEEEEEeccCCcccEEEEEEcccCCCCeEEEe-----ecC-----Ce
Q 021291 18 RASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQ-----GRD-----GT 87 (314)
Q Consensus 18 ~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~-----~~d-----g~ 87 (314)
..+++..+++++|+++|.+. +..++|++...++.+.+.... .+.++.|+| -+++|.+= ..+ -.
T Consensus 34 ~~~~~v~~~S~~G~lfA~~~-~~~v~i~~~~~~~~~lt~~~~----~~~~L~fSP--~g~yL~T~e~~~i~~~~~~~~pn 106 (566)
T KOG2315|consen 34 SRPCNVFAYSNNGRLFAYSD-NQVVKVFEIATLKVVLCVELK----KTYDLLFSP--KGNYLLTWEPWAIYGPKNASNPN 106 (566)
T ss_pred CCcceeEEEcCCCcEEEEEc-CCeEEEEEccCCcEEEEeccc----eeeeeeecc--cccccccccccccccCCCCCCCc
Confidence 44577889999998877655 457999999888644444332 289999999 77877652 222 34
Q ss_pred EEEEeCCCCCCCCCCeeeeecceeeEEEeeeeeccccccccCCCCcceeeccCCceeeecC-------------------
Q 021291 88 VKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDS------------------- 148 (314)
Q Consensus 88 v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------- 148 (314)
+++|+++++.... .+..+........|+.+.. ...-..+.....++....+.....+
T Consensus 107 ~~v~~vet~~~~s--~~q~k~Q~~W~~qfs~dEs--l~arlv~nev~f~~~~~f~~~~~kl~~~~i~~f~lSpgp~~~~v 182 (566)
T KOG2315|consen 107 VLVYNVETGVQRS--QIQKKMQNGWVPQFSIDES--LAARLVSNEVQFYDLGSFKTIQHKLSVSGITMLSLSPGPEPPFV 182 (566)
T ss_pred eeeeeeccceehh--heehhhhcCcccccccchh--hhhhhhcceEEEEecCCccceeeeeeccceeeEEecCCCCCceE
Confidence 7799998843211 1111111100111111100 0000111111111111100000000
Q ss_pred -------------------C---CCC-----------C--ceeccCCCceEEEeecC----------cCeEEEEecCCCc
Q 021291 149 -------------------L---CDS-----------K--DDVPAEGPKYMAVAGEQ----------LSEVEIWDLNTAE 183 (314)
Q Consensus 149 -------------------~---~~~-----------~--~~~~~~~~~~~~~~g~~----------d~~i~vwd~~~~~ 183 (314)
. .|. . +.|++-|..+|+.+.++ +.+++++++....
T Consensus 183 AvyvPe~kGaPa~vri~~~~~~~~~~~~a~ksFFkadkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g~s 262 (566)
T KOG2315|consen 183 AVYVPEKKGAPASVRIYKYPEEGQHQPVANKSFFKADKVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQGES 262 (566)
T ss_pred EEEccCCCCCCcEEEEeccccccccchhhhccccccceeEEEeccCCceEEEEEEEeecCCCccccccceEEEEEecCce
Confidence 0 000 0 55666666655543321 2357777776444
Q ss_pred eeeeecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEeecCCcEEEEEccCCCCceEeeecCCcceEEEEEeCC
Q 021291 184 RCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDES 263 (314)
Q Consensus 184 ~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~ 263 (314)
+...+. ..+++.++. |+|++. ++.++-|..=..+.|||++ +.++..+. .++-+++-|+|.
T Consensus 263 ~~V~L~-------------k~GPVhdv~-W~~s~~--EF~VvyGfMPAkvtifnlr--~~~v~df~--egpRN~~~fnp~ 322 (566)
T KOG2315|consen 263 VSVPLL-------------KEGPVHDVT-WSPSGR--EFAVVYGFMPAKVTIFNLR--GKPVFDFP--EGPRNTAFFNPH 322 (566)
T ss_pred EEEecC-------------CCCCceEEE-ECCCCC--EEEEEEecccceEEEEcCC--CCEeEeCC--CCCccceEECCC
Confidence 444444 367899998 999832 3456778888899999999 67776664 577889999999
Q ss_pred CCeEEEecCC---CcEEEEecCCCeeeEee-----eeeeecCCCceecee
Q 021291 264 CNGGISGGAD---QKIVLYNLDHSTYVLFG-----IGFVCDQEGNKFGTT 305 (314)
Q Consensus 264 ~~~l~s~s~d---g~i~iw~~~~~~~~~~~-----~~~~~~~~~~~~~~~ 305 (314)
|++|+.+|.+ |.|-|||+.+.+++... .-+..+|+|..|.+.
T Consensus 323 g~ii~lAGFGNL~G~mEvwDv~n~K~i~~~~a~~tt~~eW~PdGe~flTA 372 (566)
T KOG2315|consen 323 GNIILLAGFGNLPGDMEVWDVPNRKLIAKFKAANTTVFEWSPDGEYFLTA 372 (566)
T ss_pred CCEEEEeecCCCCCceEEEeccchhhccccccCCceEEEEcCCCcEEEEE
Confidence 9999888864 78999999998877653 335677888877663
No 249
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=99.28 E-value=2e-09 Score=81.67 Aligned_cols=190 Identities=14% Similarity=0.153 Sum_probs=120.0
Q ss_pred CCCeEEEEeCCCCeEEE--EEe-ccCCcccEEEEEEcccC-CCC-eEEEeecCCeEEEEeCCCCCCCCCCeeeeec---c
Q 021291 38 TGGELRIWDTVQHRTVS--SSW-VHSAAHGIVSVATGPSI-GLN-KVISQGRDGTVKCWDIENGGLSSNPSLTIKT---N 109 (314)
Q Consensus 38 ~dg~v~iwd~~~~~~~~--~~~-~~~~~~~v~~~~~~~~~-~~~-~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~---~ 109 (314)
..|.+.+|++++.+... .++ ... +.+..|.|.... ++. .++-+..+|.|.++......... .+.. .
T Consensus 44 R~Gkl~Lys~~d~~~~~l~~~q~~dt--s~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~~ss~----~L~~ls~~ 117 (339)
T KOG0280|consen 44 RSGKLHLYSLEDMKLSPLDTLQCTDT--STEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDEDESSV----HLRGLSSK 117 (339)
T ss_pred eccceEEEeecccccCccceeeeecc--cccceeeeeeccCCccceeeeccccceEEEEeeccceeee----eecccchh
Confidence 35678999987655332 222 122 447788887532 344 45567778899998765432110 1111 0
Q ss_pred eeeEE-EeeeeeccccccccCCCCcceeeccCCceeeecCCCCCCceeccCCCceEEEeecCcCeEEEEecCCCceee--
Q 021291 110 SYHFC-KLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCT-- 186 (314)
Q Consensus 110 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~vwd~~~~~~~~-- 186 (314)
..... .++ +.|++.+..++ ++..+|.+.+-+........
T Consensus 118 ki~~~~~ls------------------------------------lD~~~~~~~i~--vs~s~G~~~~v~~t~~~le~vq 159 (339)
T KOG0280|consen 118 KISVVEALS------------------------------------LDISTSGTKIF--VSDSRGSISGVYETEMVLEKVQ 159 (339)
T ss_pred hhhheeeeE------------------------------------EEeeccCceEE--EEcCCCcEEEEecceeeeeecc
Confidence 00000 111 45777777654 35457888855544443332
Q ss_pred eecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEeecCCcEEEEEccCCCCceEe-eecCCcceEEEEEe-CCC
Q 021291 187 RLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTA-MKVHLEPVLCLSID-ESC 264 (314)
Q Consensus 187 ~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~~~-~~~h~~~v~~~~~~-~~~ 264 (314)
.++ +|.. .++... |+-.+++ ++++|+.|+.+..||+|.+++.+.. .+.|...|.++.-+ |.+
T Consensus 160 ~wk--------~He~----E~Wta~-f~~~~pn---lvytGgDD~~l~~~D~R~p~~~i~~n~kvH~~GV~SI~ss~~~~ 223 (339)
T KOG0280|consen 160 TWK--------VHEF----EAWTAK-FSDKEPN---LVYTGGDDGSLSCWDIRIPKTFIWHNSKVHTSGVVSIYSSPPKP 223 (339)
T ss_pred ccc--------ccce----eeeeee-cccCCCc---eEEecCCCceEEEEEecCCcceeeecceeeecceEEEecCCCCC
Confidence 444 5533 455554 7665442 9999999999999999976766655 66789999999885 467
Q ss_pred CeEEEecCCCcEEEEecC-CCeee
Q 021291 265 NGGISGGADQKIVLYNLD-HSTYV 287 (314)
Q Consensus 265 ~~l~s~s~dg~i~iw~~~-~~~~~ 287 (314)
.+|+||+.|-.|++||.+ -++.+
T Consensus 224 ~~I~TGsYDe~i~~~DtRnm~kPl 247 (339)
T KOG0280|consen 224 TYIATGSYDECIRVLDTRNMGKPL 247 (339)
T ss_pred ceEEEeccccceeeeehhcccCcc
Confidence 799999999999999998 44444
No 250
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=99.27 E-value=3.1e-10 Score=85.90 Aligned_cols=200 Identities=16% Similarity=0.147 Sum_probs=129.1
Q ss_pred eeEEEEccCCCEEEEecCCCeEEEEeCCCCeE--EEEEeccCCcccEEEEEEcccCCCCeEEEeecCCeEEEEeCCCCC-
Q 021291 21 VTDVCFHQTKPILFAGTTGGELRIWDTVQHRT--VSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGG- 97 (314)
Q Consensus 21 v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~- 97 (314)
..++.|++.+..++++-.+|.+.+-+...... .+.++.|+.+ ++...|+.. +.+.+++|++|+.+..||++...
T Consensus 124 ~lslD~~~~~~~i~vs~s~G~~~~v~~t~~~le~vq~wk~He~E--~Wta~f~~~-~pnlvytGgDD~~l~~~D~R~p~~ 200 (339)
T KOG0280|consen 124 ALSLDISTSGTKIFVSDSRGSISGVYETEMVLEKVQTWKVHEFE--AWTAKFSDK-EPNLVYTGGDDGSLSCWDIRIPKT 200 (339)
T ss_pred eeEEEeeccCceEEEEcCCCcEEEEecceeeeeeccccccccee--eeeeecccC-CCceEEecCCCceEEEEEecCCcc
Confidence 35678888888899999999999666555443 3478889855 899999874 44789999999999999999332
Q ss_pred CCCCCeee-eecceeeEEEeeeeeccccccccCCCCcceeeccCCceeeecCCCCCCceeccCCCceEEEeecCcCeEEE
Q 021291 98 LSSNPSLT-IKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQLSEVEI 176 (314)
Q Consensus 98 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~v 176 (314)
. ++. .+.+....+.+. -+|.....+ ++|+.|..|++
T Consensus 201 ~----i~~n~kvH~~GV~SI~--------------------------------------ss~~~~~~I-~TGsYDe~i~~ 237 (339)
T KOG0280|consen 201 F----IWHNSKVHTSGVVSIY--------------------------------------SSPPKPTYI-ATGSYDECIRV 237 (339)
T ss_pred e----eeecceeeecceEEEe--------------------------------------cCCCCCceE-EEeccccceee
Confidence 2 111 122222222211 223333344 38999999999
Q ss_pred EecCC-CceeeeecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEeecCCcEEEEEccCCC-C---ceEeeecC
Q 021291 177 WDLNT-AERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPG-I---PLTAMKVH 251 (314)
Q Consensus 177 wd~~~-~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~-~---~~~~~~~h 251 (314)
||.|+ ++++..-+ ..+.++.+. ++|... + .+++++.-.-.+|-+..... + .....+.|
T Consensus 238 ~DtRnm~kPl~~~~-------------v~GGVWRi~-~~p~~~-~--~lL~~CMh~G~ki~~~~~~~~e~~~~~~s~~~h 300 (339)
T KOG0280|consen 238 LDTRNMGKPLFKAK-------------VGGGVWRIK-HHPEIF-H--RLLAACMHNGAKILDSSDKVLEFQIVLPSDKIH 300 (339)
T ss_pred eehhcccCccccCc-------------cccceEEEE-ecchhh-h--HHHHHHHhcCceEEEecccccchheeeeccccc
Confidence 99994 55544333 457889997 998733 2 23444444456777765421 2 34455677
Q ss_pred CcceEEEEEeCCCCeEEEec-CCCcEE-EEecCC
Q 021291 252 LEPVLCLSIDESCNGGISGG-ADQKIV-LYNLDH 283 (314)
Q Consensus 252 ~~~v~~~~~~~~~~~l~s~s-~dg~i~-iw~~~~ 283 (314)
.+-...-.|+....+|+|++ .|+.++ +|-.-+
T Consensus 301 dSl~YG~DWd~~~~~lATCsFYDk~~~~~Wl~~t 334 (339)
T KOG0280|consen 301 DSLCYGGDWDSKDSFLATCSFYDKKIRQLWLHIT 334 (339)
T ss_pred cceeeccccccccceeeeeeccccceeeeeeecc
Confidence 77777777755555788876 466644 665443
No 251
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.27 E-value=1.9e-10 Score=94.59 Aligned_cols=207 Identities=14% Similarity=0.164 Sum_probs=139.6
Q ss_pred EEEEccCCCEEEEecCCCeEEEEeCCCCeEEEEEeccCCcccEEEEEEcccCCCCeEEEeecCCeEEEEeCCCCCCCCCC
Q 021291 23 DVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGGLSSNP 102 (314)
Q Consensus 23 ~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~ 102 (314)
.++++.-.--|+.++....|+-++++.|+.+..+..... .++++..++ -..+|++|+.+|.|..||.+....+.
T Consensus 138 Dm~y~~~scDly~~gsg~evYRlNLEqGrfL~P~~~~~~--~lN~v~in~--~hgLla~Gt~~g~VEfwDpR~ksrv~-- 211 (703)
T KOG2321|consen 138 DMKYHKPSCDLYLVGSGSEVYRLNLEQGRFLNPFETDSG--ELNVVSINE--EHGLLACGTEDGVVEFWDPRDKSRVG-- 211 (703)
T ss_pred cccccCCCccEEEeecCcceEEEEccccccccccccccc--cceeeeecC--ccceEEecccCceEEEecchhhhhhe--
Confidence 455554222244444455799999999999998887774 499999999 77899999999999999999876544
Q ss_pred eeeeecceeeEEEeeeeeccccccccCCCCcceeeccCCceeeecCCCCCCceeccCCCceEEEeecCcCeEEEEecCCC
Q 021291 103 SLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQLSEVEIWDLNTA 182 (314)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~vwd~~~~ 182 (314)
.+..... +... .+.. ..+.-..+.|+.+|-. ++.|+.+|.+.|||++..
T Consensus 212 ~l~~~~~-v~s~----pg~~------------------------~~~svTal~F~d~gL~--~aVGts~G~v~iyDLRa~ 260 (703)
T KOG2321|consen 212 TLDAASS-VNSH----PGGD------------------------AAPSVTALKFRDDGLH--VAVGTSTGSVLIYDLRAS 260 (703)
T ss_pred eeecccc-cCCC----cccc------------------------ccCcceEEEecCCcee--EEeeccCCcEEEEEcccC
Confidence 1111111 0000 0000 0000000556666533 346777899999999998
Q ss_pred ceeeeecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEeecCCcEEEEEccCCCCceEeeecCCcceEEEEEeC
Q 021291 183 ERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDE 262 (314)
Q Consensus 183 ~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~ 262 (314)
+++..-. |.. ..++..+. |.+.+ ++..+++. ....++|||-.+ +++...+.. ...++.+++-|
T Consensus 261 ~pl~~kd---------h~~--e~pi~~l~-~~~~~--~q~~v~S~-Dk~~~kiWd~~~-Gk~~asiEp-t~~lND~C~~p 323 (703)
T KOG2321|consen 261 KPLLVKD---------HGY--ELPIKKLD-WQDTD--QQNKVVSM-DKRILKIWDECT-GKPMASIEP-TSDLNDFCFVP 323 (703)
T ss_pred Cceeecc---------cCC--ccceeeec-ccccC--CCceEEec-chHHhhhccccc-CCceeeccc-cCCcCceeeec
Confidence 8776544 433 34666776 87762 33245554 456899999998 888888775 45599999988
Q ss_pred CCCeEEEecCCCcEEEEecCC
Q 021291 263 SCNGGISGGADQKIVLYNLDH 283 (314)
Q Consensus 263 ~~~~l~s~s~dg~i~iw~~~~ 283 (314)
++-+++++-.+..+..|=+..
T Consensus 324 ~sGm~f~Ane~~~m~~yyiP~ 344 (703)
T KOG2321|consen 324 GSGMFFTANESSKMHTYYIPS 344 (703)
T ss_pred CCceEEEecCCCcceeEEccc
Confidence 888899998888887776554
No 252
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=99.24 E-value=9e-09 Score=84.72 Aligned_cols=234 Identities=16% Similarity=0.222 Sum_probs=140.5
Q ss_pred eEEEEccCCCEEEEecCCCeEEEEeCCCCeEEEEEeccCCcccEEEEEEcccCCCCeEEE-----eecCCeEEEEeCCCC
Q 021291 22 TDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVIS-----QGRDGTVKCWDIENG 96 (314)
Q Consensus 22 ~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s-----~~~dg~v~iwd~~~~ 96 (314)
++..|+.|..+.| =-..+.+.+|++...+.+. -+.|. ..|..+.++|.+....+++ .+.-..|+||.....
T Consensus 129 W~~qfs~dEsl~a-rlv~nev~f~~~~~f~~~~-~kl~~--~~i~~f~lSpgp~~~~vAvyvPe~kGaPa~vri~~~~~~ 204 (566)
T KOG2315|consen 129 WVPQFSIDESLAA-RLVSNEVQFYDLGSFKTIQ-HKLSV--SGITMLSLSPGPEPPFVAVYVPEKKGAPASVRIYKYPEE 204 (566)
T ss_pred cccccccchhhhh-hhhcceEEEEecCCcccee-eeeec--cceeeEEecCCCCCceEEEEccCCCCCCcEEEEeccccc
Confidence 5788888775433 3345679999987643322 12344 4499999998433344443 345568999988632
Q ss_pred CCCCCCeeeeec---ceeeEEEeeeeeccc-----------cccccCCCCcceeeccCCceeeecCCCCCC---ceeccC
Q 021291 97 GLSSNPSLTIKT---NSYHFCKLSLVKEPY-----------ANAKQANEPKDCYEREVGETVDTDSLCDSK---DDVPAE 159 (314)
Q Consensus 97 ~~~~~~~~~~~~---~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~ 159 (314)
..-. ....++ .......+...+... ...-........+.+. +......+..... +.|+|+
T Consensus 205 ~~~~--~~a~ksFFkadkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~-g~s~~V~L~k~GPVhdv~W~~s 281 (566)
T KOG2315|consen 205 GQHQ--PVANKSFFKADKVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQ-GESVSVPLLKEGPVHDVTWSPS 281 (566)
T ss_pred cccc--hhhhccccccceeEEEeccCCceEEEEEEEeecCCCccccccceEEEEEec-CceEEEecCCCCCceEEEECCC
Confidence 2111 111111 011111111111110 0011111122223333 3333333333333 899999
Q ss_pred CCceEEEeecCcCeEEEEecCCCceeeeecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEee--cCCcEEEEE
Q 021291 160 GPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGY--EDGSILVWD 237 (314)
Q Consensus 160 ~~~~~~~~g~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~--~dg~i~vwd 237 (314)
+..+.++-|..--++.|||++ +..+..+. .+.-.++- |+|. |+.++++|. ..|.|-|||
T Consensus 282 ~~EF~VvyGfMPAkvtifnlr-~~~v~df~--------------egpRN~~~-fnp~---g~ii~lAGFGNL~G~mEvwD 342 (566)
T KOG2315|consen 282 GREFAVVYGFMPAKVTIFNLR-GKPVFDFP--------------EGPRNTAF-FNPH---GNIILLAGFGNLPGDMEVWD 342 (566)
T ss_pred CCEEEEEEecccceEEEEcCC-CCEeEeCC--------------CCCccceE-ECCC---CCEEEEeecCCCCCceEEEe
Confidence 999998889888899999987 56666665 33455555 9998 664555553 348999999
Q ss_pred ccCCCCceEeeecCCcceEEEEEeCCCCeEEEecC------CCcEEEEecCCC
Q 021291 238 IRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGA------DQKIVLYNLDHS 284 (314)
Q Consensus 238 ~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~------dg~i~iw~~~~~ 284 (314)
..+ .+.+..+..- .-+-+.|+|||++++|+.. |+.++||++...
T Consensus 343 v~n-~K~i~~~~a~--~tt~~eW~PdGe~flTATTaPRlrvdNg~KiwhytG~ 392 (566)
T KOG2315|consen 343 VPN-RKLIAKFKAA--NTTVFEWSPDGEYFLTATTAPRLRVDNGIKIWHYTGS 392 (566)
T ss_pred ccc-hhhccccccC--CceEEEEcCCCcEEEEEeccccEEecCCeEEEEecCc
Confidence 998 8888877753 3456799999999988875 788999998754
No 253
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.23 E-value=2.3e-09 Score=82.65 Aligned_cols=102 Identities=11% Similarity=0.086 Sum_probs=71.8
Q ss_pred ceeccCCCceEEEeecCcCeEEEEecCCCceeeeecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEeecCCcE
Q 021291 154 DDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSI 233 (314)
Q Consensus 154 ~~~~~~~~~~~~~~g~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i 233 (314)
++|++|..++.......-+.+-+||++..+....+.. ...+.+.. |+|..+ .++.+.....+
T Consensus 324 lafs~Ds~y~aTrnd~~PnalW~Wdlq~l~l~avLiQ-------------k~piraf~-WdP~~p----rL~vctg~srL 385 (447)
T KOG4497|consen 324 LAFSCDSTYAATRNDKYPNALWLWDLQNLKLHAVLIQ-------------KHPIRAFE-WDPGRP----RLVVCTGKSRL 385 (447)
T ss_pred eeecCCceEEeeecCCCCceEEEEechhhhhhhhhhh-------------ccceeEEE-eCCCCc----eEEEEcCCceE
Confidence 9999998755432333345789999998887666652 34677776 999755 45555556679
Q ss_pred EEEEccCCCCceEeeecCCcceEEEEEeCCCCeEEEecCCCc
Q 021291 234 LVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQK 275 (314)
Q Consensus 234 ~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~ 275 (314)
++|...- ...-...+..-.|..+.|..+|..++..+.|..
T Consensus 386 Y~W~psg--~~~V~vP~~GF~i~~l~W~~~g~~i~l~~kDaf 425 (447)
T KOG4497|consen 386 YFWAPSG--PRVVGVPKKGFNIQKLQWLQPGEFIVLCGKDAF 425 (447)
T ss_pred EEEcCCC--ceEEecCCCCceeeeEEecCCCcEEEEEcCCce
Confidence 9998873 323233333468999999999999999998864
No 254
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.23 E-value=5e-09 Score=89.30 Aligned_cols=195 Identities=15% Similarity=0.093 Sum_probs=111.2
Q ss_pred eEEEEeCCCCeEEEEEeccCCcccEEEEEEcccCCCCeEEEeecC-C--eEEEEeCCCCCCCCCCeeeeecceeeEEEee
Q 021291 41 ELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRD-G--TVKCWDIENGGLSSNPSLTIKTNSYHFCKLS 117 (314)
Q Consensus 41 ~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d-g--~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 117 (314)
.|.++|.+.... +.+.... ..+.+..|+| ||+.|+..+.+ + .|.+||+.+++... +........
T Consensus 199 ~l~i~d~dG~~~-~~l~~~~--~~~~~p~wSP--DG~~La~~s~~~g~~~L~~~dl~tg~~~~--lt~~~g~~~------ 265 (448)
T PRK04792 199 QLMIADYDGYNE-QMLLRSP--EPLMSPAWSP--DGRKLAYVSFENRKAEIFVQDIYTQVREK--VTSFPGING------ 265 (448)
T ss_pred EEEEEeCCCCCc-eEeecCC--CcccCceECC--CCCEEEEEEecCCCcEEEEEECCCCCeEE--ecCCCCCcC------
Confidence 677778655433 3343344 4588999999 99988866543 3 58888988765311 111110000
Q ss_pred eeeccccccccCCCCcceeeccCCceeeecCCCCCCceeccCCCceEEEeecCcC--eEEEEecCCCceeeeecccccCC
Q 021291 118 LVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQLS--EVEIWDLNTAERCTRLHQNSCGG 195 (314)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~--~i~vwd~~~~~~~~~~~~~~~~~ 195 (314)
..+|+|+|+.++++ .+.++ .|+++|+.+++.. .+.
T Consensus 266 -----------------------------------~~~wSPDG~~La~~-~~~~g~~~Iy~~dl~tg~~~-~lt------ 302 (448)
T PRK04792 266 -----------------------------------APRFSPDGKKLALV-LSKDGQPEIYVVDIATKALT-RIT------ 302 (448)
T ss_pred -----------------------------------CeeECCCCCEEEEE-EeCCCCeEEEEEECCCCCeE-ECc------
Confidence 04599999987654 34455 4888898877643 333
Q ss_pred CCCcCCCCCceeeeEEEecCCCCCCceEEEEeecCC--cEEEEEccCCCCceEeeecCCcceEEEEEeCCCCeEEEecC-
Q 021291 196 SPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDG--SILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGA- 272 (314)
Q Consensus 196 ~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg--~i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~- 272 (314)
.+ ........ |+|| |+.++++...++ .|+++|+.+ ++. ..+..........+|+|+|++|+..+.
T Consensus 303 --~~----~~~~~~p~-wSpD---G~~I~f~s~~~g~~~Iy~~dl~~-g~~-~~Lt~~g~~~~~~~~SpDG~~l~~~~~~ 370 (448)
T PRK04792 303 --RH----RAIDTEPS-WHPD---GKSLIFTSERGGKPQIYRVNLAS-GKV-SRLTFEGEQNLGGSITPDGRSMIMVNRT 370 (448)
T ss_pred --cC----CCCccceE-ECCC---CCEEEEEECCCCCceEEEEECCC-CCE-EEEecCCCCCcCeeECCCCCEEEEEEec
Confidence 12 11233444 9998 553445544444 466667765 433 333322333445789999998866654
Q ss_pred CC--cEEEEecCCCeeeEee-----eeeeecCCCceec
Q 021291 273 DQ--KIVLYNLDHSTYVLFG-----IGFVCDQEGNKFG 303 (314)
Q Consensus 273 dg--~i~iw~~~~~~~~~~~-----~~~~~~~~~~~~~ 303 (314)
++ .|.++|+++++..... ...+++|+|..+.
T Consensus 371 ~g~~~I~~~dl~~g~~~~lt~~~~d~~ps~spdG~~I~ 408 (448)
T PRK04792 371 NGKFNIARQDLETGAMQVLTSTRLDESPSVAPNGTMVI 408 (448)
T ss_pred CCceEEEEEECCCCCeEEccCCCCCCCceECCCCCEEE
Confidence 34 3555677776543211 1124667776543
No 255
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=99.23 E-value=2.6e-11 Score=65.56 Aligned_cols=38 Identities=29% Similarity=0.711 Sum_probs=36.6
Q ss_pred CceEEecCCCCceeEEEEccCCCEEEEecCCCeEEEEe
Q 021291 9 DPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWD 46 (314)
Q Consensus 9 ~~~~~l~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd 46 (314)
++++++++|.+.|++|+|+|++++|++|+.|+.|++||
T Consensus 2 ~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 2 KCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred eEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 57899999999999999999999999999999999997
No 256
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.21 E-value=1.2e-08 Score=87.16 Aligned_cols=195 Identities=11% Similarity=0.051 Sum_probs=114.5
Q ss_pred eEEEEeCCCCeEEEEEeccCCcccEEEEEEcccCCCCeEEEeecC---CeEEEEeCCCCCCCCCCeeeeecceeeEEEee
Q 021291 41 ELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRD---GTVKCWDIENGGLSSNPSLTIKTNSYHFCKLS 117 (314)
Q Consensus 41 ~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d---g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 117 (314)
.|.++|.+.+. ...+..+. ..+....|+| ||+.|+..+.+ ..|.+||+.+++... +...... ..
T Consensus 180 ~l~~~d~~g~~-~~~l~~~~--~~~~~p~wSp--DG~~la~~s~~~~~~~l~~~~l~~g~~~~--l~~~~g~--~~---- 246 (430)
T PRK00178 180 TLQRSDYDGAR-AVTLLQSR--EPILSPRWSP--DGKRIAYVSFEQKRPRIFVQNLDTGRREQ--ITNFEGL--NG---- 246 (430)
T ss_pred EEEEECCCCCC-ceEEecCC--CceeeeeECC--CCCEEEEEEcCCCCCEEEEEECCCCCEEE--ccCCCCC--cC----
Confidence 57888876544 34444454 4489999999 99998876543 368999998775321 1111100 00
Q ss_pred eeeccccccccCCCCcceeeccCCceeeecCCCCCCceeccCCCceEEEeecCcC--eEEEEecCCCceeeeecccccCC
Q 021291 118 LVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQLS--EVEIWDLNTAERCTRLHQNSCGG 195 (314)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~--~i~vwd~~~~~~~~~~~~~~~~~ 195 (314)
..+|+|+|+.++++ .+.++ .|++||+.+++.. .+.
T Consensus 247 -----------------------------------~~~~SpDG~~la~~-~~~~g~~~Iy~~d~~~~~~~-~lt------ 283 (430)
T PRK00178 247 -----------------------------------APAWSPDGSKLAFV-LSKDGNPEIYVMDLASRQLS-RVT------ 283 (430)
T ss_pred -----------------------------------CeEECCCCCEEEEE-EccCCCceEEEEECCCCCeE-Ecc------
Confidence 04599999877653 33333 6888999887643 333
Q ss_pred CCCcCCCCCceeeeEEEecCCCCCCceEEEEeecCC--cEEEEEccCCCCceEeeecCCcceEEEEEeCCCCeEEEecCC
Q 021291 196 SPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDG--SILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGAD 273 (314)
Q Consensus 196 ~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg--~i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d 273 (314)
.+ ........ |+|+ |+.++++...++ .|+++|+.. ++. ..+...........|+|+|++|+..+.+
T Consensus 284 --~~----~~~~~~~~-~spD---g~~i~f~s~~~g~~~iy~~d~~~-g~~-~~lt~~~~~~~~~~~Spdg~~i~~~~~~ 351 (430)
T PRK00178 284 --NH----PAIDTEPF-WGKD---GRTLYFTSDRGGKPQIYKVNVNG-GRA-ERVTFVGNYNARPRLSADGKTLVMVHRQ 351 (430)
T ss_pred --cC----CCCcCCeE-ECCC---CCEEEEEECCCCCceEEEEECCC-CCE-EEeecCCCCccceEECCCCCEEEEEEcc
Confidence 12 11233344 9998 553444544444 577777765 443 3333222334457899999998766543
Q ss_pred -C--cEEEEecCCCeeeEee-----eeeeecCCCceec
Q 021291 274 -Q--KIVLYNLDHSTYVLFG-----IGFVCDQEGNKFG 303 (314)
Q Consensus 274 -g--~i~iw~~~~~~~~~~~-----~~~~~~~~~~~~~ 303 (314)
+ .|.+||+.+++..... ...+++|+|..+.
T Consensus 352 ~~~~~l~~~dl~tg~~~~lt~~~~~~~p~~spdg~~i~ 389 (430)
T PRK00178 352 DGNFHVAAQDLQRGSVRILTDTSLDESPSVAPNGTMLI 389 (430)
T ss_pred CCceEEEEEECCCCCEEEccCCCCCCCceECCCCCEEE
Confidence 3 4888898877543321 1224556665443
No 257
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.20 E-value=1.3e-09 Score=95.59 Aligned_cols=103 Identities=17% Similarity=0.230 Sum_probs=82.5
Q ss_pred ceEEEeecCcCeEEEEecCCCceeeeecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEeecCCcEEEEEccCC
Q 021291 162 KYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNP 241 (314)
Q Consensus 162 ~~~~~~g~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~ 241 (314)
.+.+++|+--+.|.+|++..-+....+. +| .+.+.++. |+-+ |+ ++++.++|.++++|++.+.
T Consensus 145 ~~~i~~gsv~~~iivW~~~~dn~p~~l~--------GH----eG~iF~i~-~s~d---g~-~i~s~SdDRsiRlW~i~s~ 207 (967)
T KOG0974|consen 145 ELYIASGSVFGEIIVWKPHEDNKPIRLK--------GH----EGSIFSIV-TSLD---GR-YIASVSDDRSIRLWPIDSR 207 (967)
T ss_pred EEEEEeccccccEEEEeccccCCcceec--------cc----CCceEEEE-EccC---Cc-EEEEEecCcceeeeecccc
Confidence 3455567777999999988433333344 77 66899988 9877 66 9999999999999999984
Q ss_pred CCceEeeecCCcceEEEEEeCCCCeEEEecCCCcEEEEecCC
Q 021291 242 GIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDH 283 (314)
Q Consensus 242 ~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~iw~~~~ 283 (314)
.......-+|+..|+.+.|.++ .++|++.|.+.++|+.+.
T Consensus 208 ~~~~~~~fgHsaRvw~~~~~~n--~i~t~gedctcrvW~~~~ 247 (967)
T KOG0974|consen 208 EVLGCTGFGHSARVWACCFLPN--RIITVGEDCTCRVWGVNG 247 (967)
T ss_pred cccCcccccccceeEEEEeccc--eeEEeccceEEEEEeccc
Confidence 4444467799999999999999 899999999999996553
No 258
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=99.17 E-value=3e-07 Score=72.19 Aligned_cols=258 Identities=15% Similarity=0.126 Sum_probs=149.3
Q ss_pred CCCceeEEEEccCCCEEEEecC---CCeEEEEeCCC--CeEEEEEeccCCcccEEEEEEcccCCCCeEEEeec-CCeEEE
Q 021291 17 HRASVTDVCFHQTKPILFAGTT---GGELRIWDTVQ--HRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGR-DGTVKC 90 (314)
Q Consensus 17 h~~~v~~~~~~~~~~~l~s~~~---dg~v~iwd~~~--~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~-dg~v~i 90 (314)
+.+.++-|+|+|++++|.++-. +|.|..|.++. |+....-+......+-..+++++ ++++++++.. .|.|.+
T Consensus 38 ~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~yvsvd~--~g~~vf~AnY~~g~v~v 115 (346)
T COG2706 38 ELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPCYVSVDE--DGRFVFVANYHSGSVSV 115 (346)
T ss_pred ccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCeEEEECC--CCCEEEEEEccCceEEE
Confidence 4566788999999999988755 47788887764 44322211111112347899999 9999998876 589999
Q ss_pred EeCCCCCCCCCCeeee-ecce----------eeEEEeeeeeccccccccCCCCcceeeccCCceeee---cC-CCCCC--
Q 021291 91 WDIENGGLSSNPSLTI-KTNS----------YHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDT---DS-LCDSK-- 153 (314)
Q Consensus 91 wd~~~~~~~~~~~~~~-~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~-~~~~~-- 153 (314)
+-++....+..++-.. +... .+...+.+........-.......++++..+..... .+ ++...
T Consensus 116 ~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y~~~dg~L~~~~~~~v~~G~GPRH 195 (346)
T COG2706 116 YPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDRIFLYDLDDGKLTPADPAEVKPGAGPRH 195 (346)
T ss_pred EEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCceEEEEEcccCccccccccccCCCCCcce
Confidence 9996633222221111 1111 233334444333322223333344455554331111 11 11111
Q ss_pred ceeccCCCceEEEeecCcCeEEEEecCCC-ceeeeecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEe-ecCC
Q 021291 154 DDVPAEGPKYMAVAGEQLSEVEIWDLNTA-ERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAG-YEDG 231 (314)
Q Consensus 154 ~~~~~~~~~~~~~~g~~d~~i~vwd~~~~-~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g-~~dg 231 (314)
+.|+|+++...+ ....+++|.+|..... ..+..++.....+. ... ......++. .+|| |+ +|.++ -...
T Consensus 196 i~FHpn~k~aY~-v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~-dF~--g~~~~aaIh-is~d---Gr-FLYasNRg~d 266 (346)
T COG2706 196 IVFHPNGKYAYL-VNELNSTVDVLEYNPAVGKFEELQTIDTLPE-DFT--GTNWAAAIH-ISPD---GR-FLYASNRGHD 266 (346)
T ss_pred EEEcCCCcEEEE-EeccCCEEEEEEEcCCCceEEEeeeeccCcc-ccC--CCCceeEEE-ECCC---CC-EEEEecCCCC
Confidence 999999987776 4667899999998763 22222221111110 121 233455666 8888 77 55444 3445
Q ss_pred cEEEEEccCCCCceEeee---cCCcceEEEEEeCCCCeEEEecCC-CcEEEEecCCCe
Q 021291 232 SILVWDIRNPGIPLTAMK---VHLEPVLCLSIDESCNGGISGGAD-QKIVLYNLDHST 285 (314)
Q Consensus 232 ~i~vwd~~~~~~~~~~~~---~h~~~v~~~~~~~~~~~l~s~s~d-g~i~iw~~~~~~ 285 (314)
.|.+|.+...+..+.... .+...-....|++.+++|+.+.+| ..|.+|..+...
T Consensus 267 sI~~f~V~~~~g~L~~~~~~~teg~~PR~F~i~~~g~~Liaa~q~sd~i~vf~~d~~T 324 (346)
T COG2706 267 SIAVFSVDPDGGKLELVGITPTEGQFPRDFNINPSGRFLIAANQKSDNITVFERDKET 324 (346)
T ss_pred eEEEEEEcCCCCEEEEEEEeccCCcCCccceeCCCCCEEEEEccCCCcEEEEEEcCCC
Confidence 788888876444343332 334456889999999999888875 468888776443
No 259
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=99.17 E-value=5.1e-09 Score=81.18 Aligned_cols=195 Identities=15% Similarity=0.197 Sum_probs=117.6
Q ss_pred CCceeEEEEccCCCEEEEecCCCeEEEEeCCC----CeEEEEEeccCCcccEEEEEEcccCCCCeEEEeecCCeEEEEeC
Q 021291 18 RASVTDVCFHQTKPILFAGTTGGELRIWDTVQ----HRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDI 93 (314)
Q Consensus 18 ~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~----~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd~ 93 (314)
..+++++++.++-..|+.|-..|++.-+.+.. ...++....|. .+|..+-|+. ....+++.+.|..+.---.
T Consensus 68 P~~~~~~~y~~e~~~L~vg~~ngtvtefs~sedfnkm~~~r~~~~h~--~~v~~~if~~--~~e~V~s~~~dk~~~~hc~ 143 (404)
T KOG1409|consen 68 PSPCSAMEYVSESRRLYVGQDNGTVTEFALSEDFNKMTFLKDYLAHQ--ARVSAIVFSL--THEWVLSTGKDKQFAWHCT 143 (404)
T ss_pred CCCceEeeeeccceEEEEEEecceEEEEEhhhhhhhcchhhhhhhhh--cceeeEEecC--CceeEEEeccccceEEEee
Confidence 46789999999999999999999999887543 34455556677 5599999988 7789999999977755444
Q ss_pred CCCCCCCCCeeeeecceeeEEEeeeeeccccccccCCCCcceeeccC-CceeeecCCCCCC----ceeccCCCceEEEee
Q 021291 94 ENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREV-GETVDTDSLCDSK----DDVPAEGPKYMAVAG 168 (314)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~----~~~~~~~~~~~~~~g 168 (314)
+.+.....-.+.-...... + .+. ........+......+.. .-.+...+.+|.. ++|.+....+ .+|
T Consensus 144 e~~~~lg~Y~~~~~~t~~~-~--d~~---~~fvGd~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~~~~~L--fSg 215 (404)
T KOG1409|consen 144 ESGNRLGGYNFETPASALQ-F--DAL---YAFVGDHSGQITMLKLEQNGCQLITTFNGHTGEVTCLKWDPGQRLL--FSG 215 (404)
T ss_pred ccCCcccceEeeccCCCCc-e--eeE---EEEecccccceEEEEEeecCCceEEEEcCcccceEEEEEcCCCcEE--Eec
Confidence 5443322111111110000 0 000 111111222222233322 2244555667766 6676665433 378
Q ss_pred cCcCeEEEEecCCCceeeeecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEeecCCcEEEEEccC
Q 021291 169 EQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRN 240 (314)
Q Consensus 169 ~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~ 240 (314)
..|..+.+||+-..+-+.-... +|... +..+. +.+. -+ .+.+++.||.|.+||.+.
T Consensus 216 ~~d~~vi~wdigg~~g~~~el~-------gh~~k----V~~l~-~~~~---t~-~l~S~~edg~i~~w~mn~ 271 (404)
T KOG1409|consen 216 ASDHSVIMWDIGGRKGTAYELQ-------GHNDK----VQALS-YAQH---TR-QLISCGEDGGIVVWNMNV 271 (404)
T ss_pred cccCceEEEeccCCcceeeeec-------cchhh----hhhhh-hhhh---he-eeeeccCCCeEEEEeccc
Confidence 8899999999976554332221 66443 33333 4433 22 789999999999999864
No 260
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=99.16 E-value=1.9e-09 Score=80.40 Aligned_cols=210 Identities=15% Similarity=0.144 Sum_probs=111.6
Q ss_pred EecCCCC-ceeEEEEccCCCEEEEecCCCeEEEEeCCCCeEEEEEeccCCcccEEEEEEcccC--------CCCeEEEee
Q 021291 13 VLRGHRA-SVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSI--------GLNKVISQG 83 (314)
Q Consensus 13 ~l~~h~~-~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~--------~~~~l~s~~ 83 (314)
...+|.+ .|+.+.++.+ ..|+++..++.+......++.+....+.....++..+++.+..+ .++.++++.
T Consensus 30 ~i~~~~d~~~~~~~~v~~-~~lf~~e~~~~~ss~g~~r~~~~~~~~rt~~i~~~~~~a~~sep~p~~~~s~~~t~V~~~~ 108 (319)
T KOG4714|consen 30 EIMQHADVKLSKVSLSAE-YILFTGETSSQIISLGKGRGRCISLWERDDGIDPFKVLAKNSEIDPNDACTMTDNRVCIGY 108 (319)
T ss_pred hcccccceEEEEeechhh-heeecccchhheeeeccceEEEechhhcccCcCceeeeeccCCCCCcccccccCCceEecC
Confidence 3334443 2556666643 46788888887777766555443322222111223333332110 247899999
Q ss_pred cCCeEEEEeCCCCCCCCCCeeeeecceeeEEEee---eeeccccccccCCCCcceeeccCCceeeecC---CCCCCceec
Q 021291 84 RDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLS---LVKEPYANAKQANEPKDCYEREVGETVDTDS---LCDSKDDVP 157 (314)
Q Consensus 84 ~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~ 157 (314)
.||.+.+++.+.-......+-..+......+.+. ....+.......-.....+.+++........ ..-..++-+
T Consensus 109 ~dg~~~v~s~~~~~~~~~~i~~~~~~~as~~~~~~~~~i~s~~~g~~n~~d~~~a~~~~p~~t~~~~~~~~~~v~~l~~h 188 (319)
T KOG4714|consen 109 ADGSLAVFSTDKDLALMSRIPSIHSGSASRKICRHGNSILSGGCGNWNAQDNFYANTLDPIKTLIPSKKALDAVTALCSH 188 (319)
T ss_pred CCceEEEEechHHHhhhhhcccccccccccceeecccEEecCCcceEeeccceeeecccccccccccccccccchhhhCC
Confidence 9999999998762111100101111111111111 0000000111111112222333222211111 111116777
Q ss_pred cCCCceEEEeecCcCeEEEEecCCCceeeeecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEeecCCcEEEEE
Q 021291 158 AEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWD 237 (314)
Q Consensus 158 ~~~~~~~~~~g~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd 237 (314)
|..+++++ +|+.||.+-+||.+....+..+-. .| +..++.+. |+|..++ .|+++++||.+..||
T Consensus 189 p~qq~~v~-cgt~dg~~~l~d~rn~~~p~S~l~-------ah----k~~i~eV~-FHpk~p~---~Lft~sedGslw~wd 252 (319)
T KOG4714|consen 189 PAQQHLVC-CGTDDGIVGLWDARNVAMPVSLLK-------AH----KAEIWEVH-FHPKNPE---HLFTCSEDGSLWHWD 252 (319)
T ss_pred cccccEEE-EecCCCeEEEEEcccccchHHHHH-------Hh----hhhhhhee-ccCCCch---heeEecCCCcEEEEc
Confidence 88877765 788899999999998765544432 55 44677777 9998653 799999999999999
Q ss_pred cc
Q 021291 238 IR 239 (314)
Q Consensus 238 ~~ 239 (314)
..
T Consensus 253 as 254 (319)
T KOG4714|consen 253 AS 254 (319)
T ss_pred CC
Confidence 87
No 261
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.15 E-value=3.8e-10 Score=91.09 Aligned_cols=237 Identities=14% Similarity=0.089 Sum_probs=130.4
Q ss_pred EEEeccCCcccEEEEEEcccCCCCeEEEeecCCeEEEEeCCCCCCCCCCeeeeecceeeEEEeeeeeccc-----ccccc
Q 021291 54 SSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPY-----ANAKQ 128 (314)
Q Consensus 54 ~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~ 128 (314)
..+..|. +.|..|.|+. .|..|++++.|..|.+||...+.... .+..... ...|...+.+. .....
T Consensus 136 ~kL~~H~--GcVntV~FN~--~Gd~l~SgSDD~~vv~WdW~~~~~~l----~f~SGH~-~NvfQaKFiP~s~d~ti~~~s 206 (559)
T KOG1334|consen 136 KKLNKHK--GCVNTVHFNQ--RGDVLASGSDDLQVVVWDWVSGSPKL----SFESGHC-NNVFQAKFIPFSGDRTIVTSS 206 (559)
T ss_pred hcccCCC--Cccceeeecc--cCceeeccCccceEEeehhhccCccc----ccccccc-cchhhhhccCCCCCcCceecc
Confidence 4556777 4599999999 99999999999999999998775422 2221110 01111111111 11111
Q ss_pred CCCCcceeec-cCCcee-eecCCCCCC----ceeccCCCceEEEeecCcCeEEEEecCCCceeeeecccc---c----CC
Q 021291 129 ANEPKDCYER-EVGETV-DTDSLCDSK----DDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNS---C----GG 195 (314)
Q Consensus 129 ~~~~~~~~~~-~~~~~~-~~~~~~~~~----~~~~~~~~~~~~~~g~~d~~i~vwd~~~~~~~~~~~~~~---~----~~ 195 (314)
..+....-.+ ..+... ...+..|.+ ++.-|+..+.+.+ ++.|+.+.-+|++.......+.... . ..
T Consensus 207 ~dgqvr~s~i~~t~~~e~t~rl~~h~g~vhklav~p~sp~~f~S-~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~ 285 (559)
T KOG1334|consen 207 RDGQVRVSEILETGYVENTKRLAPHEGPVHKLAVEPDSPKPFLS-CGEDAVVFHIDLRQDVPAEKFVCREADEKERVGLY 285 (559)
T ss_pred ccCceeeeeeccccceecceecccccCccceeeecCCCCCcccc-cccccceeeeeeccCCccceeeeeccCCccceeee
Confidence 1122222222 112111 222333433 8888888887774 5558999999998765433222000 0 00
Q ss_pred C--------------------------CCcCCCCCc----------------eeeeEEEecCCCCCCceEEEEeecCCcE
Q 021291 196 S--------------------------PNFSSKGRG----------------MCMAVQAYLPSKSQGFVNVLAGYEDGSI 233 (314)
Q Consensus 196 ~--------------------------~~h~~~~~~----------------~~~~~~~~~p~~~~g~~~l~~g~~dg~i 233 (314)
. ..+..+..+ .|+++. |+.++. -+++...|-.|
T Consensus 286 ~Ia~~P~nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~-Ysh~~s----ElLaSYnDe~I 360 (559)
T KOG1334|consen 286 TIAVDPRNTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLV-YSHDGS----ELLASYNDEDI 360 (559)
T ss_pred eEecCCCCccccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEE-ecCCcc----ceeeeecccce
Confidence 0 000011111 234444 554422 34455556667
Q ss_pred EEEEccCC-C----------CceEe-eecCCc--ceEEEEE-eCCCCeEEEecCCCcEEEEecCCCeeeEe-------ee
Q 021291 234 LVWDIRNP-G----------IPLTA-MKVHLE--PVLCLSI-DESCNGGISGGADQKIVLYNLDHSTYVLF-------GI 291 (314)
Q Consensus 234 ~vwd~~~~-~----------~~~~~-~~~h~~--~v~~~~~-~~~~~~l~s~s~dg~i~iw~~~~~~~~~~-------~~ 291 (314)
+++.-... + ..+.. +++|.. .|..+-| .|...|+++||.-|.|.||+-.+++.+.. ..
T Consensus 361 YLF~~~~~~G~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t~eii~~MegDr~VVN 440 (559)
T KOG1334|consen 361 YLFNKSMGDGSEPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWDKKTGEIIRFMEGDRHVVN 440 (559)
T ss_pred EEeccccccCCCCCCCcchhhccchhhcccccccccceeeeccCccceEEecCccceEEEEecchhHHHHHhhcccceEe
Confidence 77743210 1 12222 677754 5888888 88899999999999999999988876654 23
Q ss_pred eeeecCCCceecee
Q 021291 292 GFVCDQEGNKFGTT 305 (314)
Q Consensus 292 ~~~~~~~~~~~~~~ 305 (314)
.+-++|--.+++++
T Consensus 441 CLEpHP~~PvLAsS 454 (559)
T KOG1334|consen 441 CLEPHPHLPVLASS 454 (559)
T ss_pred ccCCCCCCchhhcc
Confidence 34455655555553
No 262
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.13 E-value=1.4e-07 Score=77.85 Aligned_cols=248 Identities=11% Similarity=0.114 Sum_probs=140.5
Q ss_pred EEEecCC----CeEEEEeC--CCCeEE--EEEeccCCcccEEEEEEcccCCCCeEEEeec----CCeEEEEeCCCC--CC
Q 021291 33 LFAGTTG----GELRIWDT--VQHRTV--SSSWVHSAAHGIVSVATGPSIGLNKVISQGR----DGTVKCWDIENG--GL 98 (314)
Q Consensus 33 l~s~~~d----g~v~iwd~--~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~----dg~v~iwd~~~~--~~ 98 (314)
++.|+.. +.|.+|++ ++++.. ...... .....++++| ++++|+++.. ++.|..|++... ++
T Consensus 2 ~~vgsy~~~~~~gI~~~~~d~~~g~l~~~~~~~~~---~~Ps~l~~~~--~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L 76 (345)
T PF10282_consen 2 LYVGSYTNGKGGGIYVFRFDEETGTLTLVQTVAEG---ENPSWLAVSP--DGRRLYVVNEGSGDSGGVSSYRIDPDTGTL 76 (345)
T ss_dssp EEEEECCSSSSTEEEEEEEETTTTEEEEEEEEEES---SSECCEEE-T--TSSEEEEEETTSSTTTEEEEEEEETTTTEE
T ss_pred EEEEcCCCCCCCcEEEEEEcCCCCCceEeeeecCC---CCCceEEEEe--CCCEEEEEEccccCCCCEEEEEECCCccee
Confidence 4555555 68999888 444432 222222 3367889999 8899998876 578999998764 32
Q ss_pred CCCCeeeeecceeeEEEe--eeeeccccccccCCCCcceeeccCCceeeec----------------CCCCCC-ceeccC
Q 021291 99 SSNPSLTIKTNSYHFCKL--SLVKEPYANAKQANEPKDCYEREVGETVDTD----------------SLCDSK-DDVPAE 159 (314)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~-~~~~~~ 159 (314)
.. +-.........|.+ +............++...++.+.....+... ...|.. +.++|+
T Consensus 77 ~~--~~~~~~~g~~p~~i~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pd 154 (345)
T PF10282_consen 77 TL--LNSVPSGGSSPCHIAVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPD 154 (345)
T ss_dssp EE--EEEEEESSSCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TT
T ss_pred EE--eeeeccCCCCcEEEEEecCCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCC
Confidence 11 22222222223333 3344444455556677777777653211111 111222 889999
Q ss_pred CCceEEEeecCcCeEEEEecCCCc--ee--eeecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEeecCCcEEE
Q 021291 160 GPKYMAVAGEQLSEVEIWDLNTAE--RC--TRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILV 235 (314)
Q Consensus 160 ~~~~~~~~g~~d~~i~vwd~~~~~--~~--~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~v 235 (314)
+++++++--+ ...|.+|++.... .. ..+.. +.......+. |+|+ ++...++.-.++.|.+
T Consensus 155 g~~v~v~dlG-~D~v~~~~~~~~~~~l~~~~~~~~-----------~~G~GPRh~~-f~pd---g~~~Yv~~e~s~~v~v 218 (345)
T PF10282_consen 155 GRFVYVPDLG-ADRVYVYDIDDDTGKLTPVDSIKV-----------PPGSGPRHLA-FSPD---GKYAYVVNELSNTVSV 218 (345)
T ss_dssp SSEEEEEETT-TTEEEEEEE-TTS-TEEEEEEEEC-----------STTSSEEEEE-E-TT---SSEEEEEETTTTEEEE
T ss_pred CCEEEEEecC-CCEEEEEEEeCCCceEEEeecccc-----------ccCCCCcEEE-EcCC---cCEEEEecCCCCcEEE
Confidence 9988765444 4579999997655 21 12221 1223355565 9998 6646677777889999
Q ss_pred EEccCC-CC--ceEeeec----C--CcceEEEEEeCCCCeEEEe-cCCCcEEEEecCC--CeeeE--e-------eeeee
Q 021291 236 WDIRNP-GI--PLTAMKV----H--LEPVLCLSIDESCNGGISG-GADQKIVLYNLDH--STYVL--F-------GIGFV 294 (314)
Q Consensus 236 wd~~~~-~~--~~~~~~~----h--~~~v~~~~~~~~~~~l~s~-s~dg~i~iw~~~~--~~~~~--~-------~~~~~ 294 (314)
+++... +. .+..+.. . ......|+++|+|++|.++ ..++.|.+|+++. ++... . ...+.
T Consensus 219 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~~~G~~Pr~~~ 298 (345)
T PF10282_consen 219 FDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQTVPTGGKFPRHFA 298 (345)
T ss_dssp EEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEEEEESSSSEEEEE
T ss_pred EeecccCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEeccCCEEEEEEEecCCCceEEEEEEeCCCCCccEEE
Confidence 999821 32 1222221 1 1257889999999987554 4577899999943 22211 1 24566
Q ss_pred ecCCCceec
Q 021291 295 CDQEGNKFG 303 (314)
Q Consensus 295 ~~~~~~~~~ 303 (314)
++++|..+.
T Consensus 299 ~s~~g~~l~ 307 (345)
T PF10282_consen 299 FSPDGRYLY 307 (345)
T ss_dssp E-TTSSEEE
T ss_pred EeCCCCEEE
Confidence 778876554
No 263
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=99.12 E-value=8.4e-09 Score=84.91 Aligned_cols=229 Identities=13% Similarity=0.085 Sum_probs=129.6
Q ss_pred ceeEEEEccCCCEEEEecC-----------CCeEEEEeCCCCeEEEEEeccCCcccEEE-EEEcccCCCCeEEEeecCCe
Q 021291 20 SVTDVCFHQTKPILFAGTT-----------GGELRIWDTVQHRTVSSSWVHSAAHGIVS-VATGPSIGLNKVISQGRDGT 87 (314)
Q Consensus 20 ~v~~~~~~~~~~~l~s~~~-----------dg~v~iwd~~~~~~~~~~~~~~~~~~v~~-~~~~~~~~~~~l~s~~~dg~ 87 (314)
.|.-+.|||..+||+|-+. ...++|||+.+|...+.+........++- ..||. |++++|--.. .+
T Consensus 251 ~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI~tG~lkrsF~~~~~~~~~WP~frWS~--DdKy~Arm~~-~s 327 (698)
T KOG2314|consen 251 GVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDIATGLLKRSFPVIKSPYLKWPIFRWSH--DDKYFARMTG-NS 327 (698)
T ss_pred CceeeecCCccceEEEecCCccccCcccCCCceEEEEEccccchhcceeccCCCccccceEEecc--CCceeEEecc-ce
Confidence 4888999999999998653 14799999999999988876443344544 57998 8888886665 47
Q ss_pred EEEEeCCCCCCCCCCeeeeecceeeEEEeeee---------------------ecccccc--------------------
Q 021291 88 VKCWDIENGGLSSNPSLTIKTNSYHFCKLSLV---------------------KEPYANA-------------------- 126 (314)
Q Consensus 88 v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------~~~~~~~-------------------- 126 (314)
|.||+.....+.....+.+. ....-.+++. .-|....
T Consensus 328 isIyEtpsf~lld~Kslki~--gIr~FswsP~~~llAYwtpe~~~~parvtL~evPs~~~iRt~nlfnVsDckLhWQk~g 405 (698)
T KOG2314|consen 328 ISIYETPSFMLLDKKSLKIS--GIRDFSWSPTSNLLAYWTPETNNIPARVTLMEVPSKREIRTKNLFNVSDCKLHWQKSG 405 (698)
T ss_pred EEEEecCceeeecccccCCc--cccCcccCCCcceEEEEcccccCCcceEEEEecCccceeeeccceeeeccEEEeccCC
Confidence 88888655332211011100 0000000000 0000000
Q ss_pred ---------------ccCCCCcceeeccCCceeeecCCCCCC---ceeccCCCceEEEeecC-cCeEEEEecCC-Cc---
Q 021291 127 ---------------KQANEPKDCYEREVGETVDTDSLCDSK---DDVPAEGPKYMAVAGEQ-LSEVEIWDLNT-AE--- 183 (314)
Q Consensus 127 ---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~g~~-d~~i~vwd~~~-~~--- 183 (314)
...-....+..++..........-... .+|-|.|+.+.+.+|.. ..++.+|-+.+ ..
T Consensus 406 dyLcvkvdR~tK~~~~g~f~n~eIfrireKdIpve~velke~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~~~~ 485 (698)
T KOG2314|consen 406 DYLCVKVDRHTKSKVKGQFSNLEIFRIREKDIPVEVVELKESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIKKPS 485 (698)
T ss_pred cEEEEEEEeeccccccceEeeEEEEEeeccCCCceeeecchheeeeeeccCCCeEEEEEccccccceeEEEeecCCCchh
Confidence 000001111122221111111111111 67889999887776643 35688898873 22
Q ss_pred eeeeecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEe---ecCCcEEEEEccCCCCceEeeecCCcceEEEEE
Q 021291 184 RCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAG---YEDGSILVWDIRNPGIPLTAMKVHLEPVLCLSI 260 (314)
Q Consensus 184 ~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g---~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~~~~ 260 (314)
++..+. ...+..+. |+|. |+ +++.+ +..|.+.++|+.. ..+...-..-.-..+.+.|
T Consensus 486 lVk~~d--------------k~~~N~vf-wsPk---G~-fvvva~l~s~~g~l~F~D~~~-a~~k~~~~~eh~~at~veW 545 (698)
T KOG2314|consen 486 LVKELD--------------KKFANTVF-WSPK---GR-FVVVAALVSRRGDLEFYDTDY-ADLKDTASPEHFAATEVEW 545 (698)
T ss_pred hhhhhc--------------ccccceEE-EcCC---Cc-EEEEEEecccccceEEEecch-hhhhhccCccccccccceE
Confidence 233333 23567777 9998 77 44443 4578999999985 2222222111234578999
Q ss_pred eCCCCeEEEecCC
Q 021291 261 DESCNGGISGGAD 273 (314)
Q Consensus 261 ~~~~~~l~s~s~d 273 (314)
+|.|+|++|++.-
T Consensus 546 DPtGRYvvT~ss~ 558 (698)
T KOG2314|consen 546 DPTGRYVVTSSSS 558 (698)
T ss_pred CCCCCEEEEeeeh
Confidence 9999999999864
No 264
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.11 E-value=1.4e-07 Score=88.09 Aligned_cols=228 Identities=14% Similarity=0.066 Sum_probs=132.7
Q ss_pred eeEEEEccCCCEEEEe-cCCCeEEEEeCCCCeEEEEEeccC--------C-------cccEEEEEEcccCCCCeEEEeec
Q 021291 21 VTDVCFHQTKPILFAG-TTGGELRIWDTVQHRTVSSSWVHS--------A-------AHGIVSVATGPSIGLNKVISQGR 84 (314)
Q Consensus 21 v~~~~~~~~~~~l~s~-~~dg~v~iwd~~~~~~~~~~~~~~--------~-------~~~v~~~~~~~~~~~~~l~s~~~ 84 (314)
...++++++++.|+.+ ...+.|+++|..++. +.++.+.. + -..-..++++|. ++..+++.+.
T Consensus 626 P~GIavd~~gn~LYVaDt~n~~Ir~id~~~~~-V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~-~g~LyVad~~ 703 (1057)
T PLN02919 626 PQGLAYNAKKNLLYVADTENHALREIDFVNET-VRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPV-NEKVYIAMAG 703 (1057)
T ss_pred CcEEEEeCCCCEEEEEeCCCceEEEEecCCCE-EEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecC-CCeEEEEECC
Confidence 5778999887765554 456789999987654 33332210 0 012368899982 3345567677
Q ss_pred CCeEEEEeCCCCCCCCCCeeeeecceeeEEEeeeeeccccccccCCCCcceeeccCCceeeecCCCCCCceeccCCCceE
Q 021291 85 DGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYM 164 (314)
Q Consensus 85 dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (314)
++.|++||..++... .+...... ... .+. ......+..-.+++++|+++.++
T Consensus 704 ~~~I~v~d~~~g~v~-----~~~G~G~~---~~~----------~g~----------~~~~~~~~~P~GIavspdG~~LY 755 (1057)
T PLN02919 704 QHQIWEYNISDGVTR-----VFSGDGYE---RNL----------NGS----------SGTSTSFAQPSGISLSPDLKELY 755 (1057)
T ss_pred CCeEEEEECCCCeEE-----EEecCCcc---ccC----------CCC----------ccccccccCccEEEEeCCCCEEE
Confidence 899999999876421 11100000 000 000 00000011111188999998776
Q ss_pred EEeecCcCeEEEEecCCCceeeeeccc----ccCCCCCcCC-----CCCceeeeEEEecCCCCCCceEEEEeecCCcEEE
Q 021291 165 AVAGEQLSEVEIWDLNTAERCTRLHQN----SCGGSPNFSS-----KGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILV 235 (314)
Q Consensus 165 ~~~g~~d~~i~vwd~~~~~~~~~~~~~----~~~~~~~h~~-----~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~v 235 (314)
+ +.+.++.|++||+.++......... ......+..+ ..-.....++ ++|+ |. ++++...++.|++
T Consensus 756 V-ADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gva-vd~d---G~-LYVADs~N~rIrv 829 (1057)
T PLN02919 756 I-ADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVL-CAKD---GQ-IYVADSYNHKIKK 829 (1057)
T ss_pred E-EECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCceee-EeCC---Cc-EEEEECCCCEEEE
Confidence 6 4555799999999876532111000 0000000000 0011234565 8877 55 7888888999999
Q ss_pred EEccCCCCceEeeec--------------CCcceEEEEEeCCCCeEEEecCCCcEEEEecCCCee
Q 021291 236 WDIRNPGIPLTAMKV--------------HLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTY 286 (314)
Q Consensus 236 wd~~~~~~~~~~~~~--------------h~~~v~~~~~~~~~~~l~s~s~dg~i~iw~~~~~~~ 286 (314)
||..+ +... .+.+ .-.....|+++++|+.+++-+.++.|++||+++++.
T Consensus 830 iD~~t-g~v~-tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn~Irvid~~~~~~ 892 (1057)
T PLN02919 830 LDPAT-KRVT-TLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADTNNSLIRYLDLNKGEA 892 (1057)
T ss_pred EECCC-CeEE-EEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEEECCCCEEEEEECCCCcc
Confidence 99985 4332 2222 112567899999999899999999999999998764
No 265
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.11 E-value=6.3e-09 Score=86.06 Aligned_cols=114 Identities=14% Similarity=0.136 Sum_probs=92.8
Q ss_pred ceEEEeecCcCeEEEEecCCCceeeeecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEeecCCcEEEEEccCC
Q 021291 162 KYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNP 241 (314)
Q Consensus 162 ~~~~~~g~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~ 241 (314)
..+++-|...|.|.+|+...++....+... .| .+.+.++. ++.+- + .|.+++.|+.+..|+...
T Consensus 70 t~~lvlgt~~g~v~~ys~~~g~it~~~st~------~h----~~~v~~~~-~~~~~--~--ciyS~~ad~~v~~~~~~~- 133 (541)
T KOG4547|consen 70 TSMLVLGTPQGSVLLYSVAGGEITAKLSTD------KH----YGNVNEIL-DAQRL--G--CIYSVGADLKVVYILEKE- 133 (541)
T ss_pred ceEEEeecCCccEEEEEecCCeEEEEEecC------CC----CCcceeee-ccccc--C--ceEecCCceeEEEEeccc-
Confidence 345556777899999999999988887632 34 45666665 55542 2 799999999999999998
Q ss_pred CCceEeeecCCcceEEEEEeCCCCeEEEecCCCcEEEEecCCCeeeEeeeee
Q 021291 242 GIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTYVLFGIGF 293 (314)
Q Consensus 242 ~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~iw~~~~~~~~~~~~~~ 293 (314)
.+.++.+++....+.+++.+||+..|+++| +.|++||+++.+.+..+.||
T Consensus 134 ~~~~~~~~~~~~~~~sl~is~D~~~l~~as--~~ik~~~~~~kevv~~ftgh 183 (541)
T KOG4547|consen 134 KVIIRIWKEQKPLVSSLCISPDGKILLTAS--RQIKVLDIETKEVVITFTGH 183 (541)
T ss_pred ceeeeeeccCCCccceEEEcCCCCEEEecc--ceEEEEEccCceEEEEecCC
Confidence 888899999889999999999999888876 57999999999998876654
No 266
>PRK04043 tolB translocation protein TolB; Provisional
Probab=99.08 E-value=4.1e-07 Score=76.73 Aligned_cols=197 Identities=6% Similarity=-0.015 Sum_probs=116.3
Q ss_pred ceeEEEEccCCCE-EEEecC---CCeEEEEeCCCCeEEEEEeccCCcccEEEEEEcccCCCCeEE-EeecC--CeEEEEe
Q 021291 20 SVTDVCFHQTKPI-LFAGTT---GGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVI-SQGRD--GTVKCWD 92 (314)
Q Consensus 20 ~v~~~~~~~~~~~-l~s~~~---dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~-s~~~d--g~v~iwd 92 (314)
.+..-.|+|||+. ++..+. +..|.++|+.+++...... .. .......|+| ||+.++ +.+.+ ..|.++|
T Consensus 189 ~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~-~~--g~~~~~~~SP--DG~~la~~~~~~g~~~Iy~~d 263 (419)
T PRK04043 189 LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIAS-SQ--GMLVVSDVSK--DGSKLLLTMAPKGQPDIYLYD 263 (419)
T ss_pred CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEec-CC--CcEEeeEECC--CCCEEEEEEccCCCcEEEEEE
Confidence 6778999999984 554333 3579999998886654433 33 3366788999 988766 44433 4677778
Q ss_pred CCCCCCCCCCeeeeecceeeEEEeeeeeccccccccCCCCcceeeccCCceeeecCCCCCCceeccCCCceEEEeecCc-
Q 021291 93 IENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQL- 171 (314)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d- 171 (314)
+.+++... +...... ... ..|+|||+.+++++...+
T Consensus 264 l~~g~~~~-----LT~~~~~--d~~------------------------------------p~~SPDG~~I~F~Sdr~g~ 300 (419)
T PRK04043 264 TNTKTLTQ-----ITNYPGI--DVN------------------------------------GNFVEDDKRIVFVSDRLGY 300 (419)
T ss_pred CCCCcEEE-----cccCCCc--cCc------------------------------------cEECCCCCEEEEEECCCCC
Confidence 77764311 1111100 000 349999998877553321
Q ss_pred CeEEEEecCCCceeeeecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEeecC--------CcEEEEEccCCCC
Q 021291 172 SEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYED--------GSILVWDIRNPGI 243 (314)
Q Consensus 172 ~~i~vwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~d--------g~i~vwd~~~~~~ 243 (314)
..|++.|+.+++....... +. . ... |+|+ |+.++++...+ ..|.+.|+.. +.
T Consensus 301 ~~Iy~~dl~~g~~~rlt~~-------g~----~----~~~-~SPD---G~~Ia~~~~~~~~~~~~~~~~I~v~d~~~-g~ 360 (419)
T PRK04043 301 PNIFMKKLNSGSVEQVVFH-------GK----N----NSS-VSTY---KNYIVYSSRETNNEFGKNTFNLYLISTNS-DY 360 (419)
T ss_pred ceEEEEECCCCCeEeCccC-------CC----c----Cce-ECCC---CCEEEEEEcCCCcccCCCCcEEEEEECCC-CC
Confidence 2688888887765332220 11 1 124 9998 55344444433 3688888876 43
Q ss_pred ceEeeecCCcceEEEEEeCCCCeEEEecCC-C--cEEEEecCCCee
Q 021291 244 PLTAMKVHLEPVLCLSIDESCNGGISGGAD-Q--KIVLYNLDHSTY 286 (314)
Q Consensus 244 ~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d-g--~i~iw~~~~~~~ 286 (314)
...+... .......|+|||+.|+-.+.+ + .+.+.+++....
T Consensus 361 -~~~LT~~-~~~~~p~~SPDG~~I~f~~~~~~~~~L~~~~l~g~~~ 404 (419)
T PRK04043 361 -IRRLTAN-GVNQFPRFSSDGGSIMFIKYLGNQSALGIIRLNYNKS 404 (419)
T ss_pred -eEECCCC-CCcCCeEECCCCCEEEEEEccCCcEEEEEEecCCCee
Confidence 3444432 233357899999987555443 2 366667765443
No 267
>PRK01029 tolB translocation protein TolB; Provisional
Probab=99.07 E-value=1.3e-07 Score=80.13 Aligned_cols=201 Identities=12% Similarity=0.040 Sum_probs=110.9
Q ss_pred CeEEEEeCCCCeEEEEEeccCCcccEEEEEEcccCCCCe--E-EEeecCC--eEEEEeCCCCCCCCCCeeeeecceeeEE
Q 021291 40 GELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNK--V-ISQGRDG--TVKCWDIENGGLSSNPSLTIKTNSYHFC 114 (314)
Q Consensus 40 g~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~--l-~s~~~dg--~v~iwd~~~~~~~~~~~~~~~~~~~~~~ 114 (314)
+.|.+.|.+.+... .+.... ..+.+-+|+| ||+. + ++...+| .|.+.++.+++... +.........
T Consensus 165 ~~l~~~d~dG~~~~-~lt~~~--~~~~sP~wSP--DG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~--lt~~~g~~~~-- 235 (428)
T PRK01029 165 GELWSVDYDGQNLR-PLTQEH--SLSITPTWMH--IGSGFPYLYVSYKLGVPKIFLGSLENPAGKK--ILALQGNQLM-- 235 (428)
T ss_pred ceEEEEcCCCCCce-EcccCC--CCcccceEcc--CCCceEEEEEEccCCCceEEEEECCCCCceE--eecCCCCccc--
Confidence 46778887654433 333333 3367789999 9875 3 2444443 57777888775322 2111111100
Q ss_pred EeeeeeccccccccCCCCcceeeccCCceeeecCCCCCCceeccCCCceEEEee---cCcCeEEEEecCCCc--eeeeec
Q 021291 115 KLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAG---EQLSEVEIWDLNTAE--RCTRLH 189 (314)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g---~~d~~i~vwd~~~~~--~~~~~~ 189 (314)
.+|+|||+.++.++. ..|-.+.+|++..+. ....+.
T Consensus 236 ---------------------------------------p~wSPDG~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt 276 (428)
T PRK01029 236 ---------------------------------------PTFSPRKKLLAFISDRYGNPDLFIQSFSLETGAIGKPRRLL 276 (428)
T ss_pred ---------------------------------------eEECCCCCEEEEEECCCCCcceeEEEeecccCCCCcceEee
Confidence 459999988776431 112334447766531 222222
Q ss_pred ccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEeecCCcEEEE--EccCCCCceEeeecCCcceEEEEEeCCCCeE
Q 021291 190 QNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVW--DIRNPGIPLTAMKVHLEPVLCLSIDESCNGG 267 (314)
Q Consensus 190 ~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vw--d~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l 267 (314)
. +. .+...... |+|| |+.++++...+|...+| ++...+.....+..+...+....|+|||++|
T Consensus 277 ~-------~~----~~~~~~p~-wSPD---G~~Laf~s~~~g~~~ly~~~~~~~g~~~~~lt~~~~~~~~p~wSPDG~~L 341 (428)
T PRK01029 277 N-------EA----FGTQGNPS-FSPD---GTRLVFVSNKDGRPRIYIMQIDPEGQSPRLLTKKYRNSSCPAWSPDGKKI 341 (428)
T ss_pred c-------CC----CCCcCCeE-ECCC---CCEEEEEECCCCCceEEEEECcccccceEEeccCCCCccceeECCCCCEE
Confidence 1 11 11223444 9998 55344444456655555 4432133344555555677889999999988
Q ss_pred EEecCC---CcEEEEecCCCeeeEee------eeeeecCCCceec
Q 021291 268 ISGGAD---QKIVLYNLDHSTYVLFG------IGFVCDQEGNKFG 303 (314)
Q Consensus 268 ~s~s~d---g~i~iw~~~~~~~~~~~------~~~~~~~~~~~~~ 303 (314)
+..+.+ ..|.+||+.+++..... ....++|+|..+.
T Consensus 342 af~~~~~g~~~I~v~dl~~g~~~~Lt~~~~~~~~p~wSpDG~~L~ 386 (428)
T PRK01029 342 AFCSVIKGVRQICVYDLATGRDYQLTTSPENKESPSWAIDSLHLV 386 (428)
T ss_pred EEEEcCCCCcEEEEEECCCCCeEEccCCCCCccceEECCCCCEEE
Confidence 766543 36999999888654321 2245567776543
No 268
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=99.06 E-value=8.7e-07 Score=71.95 Aligned_cols=218 Identities=9% Similarity=0.008 Sum_probs=121.8
Q ss_pred CeEEEEeCCCCeEEEEEeccCCcccEEEEEEcccCCCCeEEEeec----------CCeEEEEeCCCCCCCCCCeeeeecc
Q 021291 40 GELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGR----------DGTVKCWDIENGGLSSNPSLTIKTN 109 (314)
Q Consensus 40 g~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~----------dg~v~iwd~~~~~~~~~~~~~~~~~ 109 (314)
++|.+.|..+++.+..+..-..+ - .+ ++| |++.|+.+.. +..|.+||..+.+.+.+ +.+...
T Consensus 27 ~~v~ViD~~~~~v~g~i~~G~~P--~-~~-~sp--Dg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~--i~~p~~ 98 (352)
T TIGR02658 27 TQVYTIDGEAGRVLGMTDGGFLP--N-PV-VAS--DGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIAD--IELPEG 98 (352)
T ss_pred ceEEEEECCCCEEEEEEEccCCC--c-ee-ECC--CCCEEEEEeccccccccCCCCCEEEEEECccCcEEeE--EccCCC
Confidence 89999999999999888765533 2 34 999 9888886654 78999999999876541 121111
Q ss_pred eeeEEEeeeeeccccccccCCCCcceeeccCCceeeecCCCCCCceeccCCCceEEEeecCcCeEEEEecCCCceeeeec
Q 021291 110 SYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLH 189 (314)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~vwd~~~~~~~~~~~ 189 (314)
+.....-.. ..++++|+|+.++++.-+.+..|.+.|+.+++.+..+.
T Consensus 99 p~~~~~~~~---------------------------------~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~ 145 (352)
T TIGR02658 99 PRFLVGTYP---------------------------------WMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMD 145 (352)
T ss_pred chhhccCcc---------------------------------ceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEe
Confidence 000000000 00446666665554332335666666666666555443
Q ss_pred ccccCCC--------CCcCCC-----------CCceeeeEEEecC------CCC-----CCceEEEEeecCCcEEEEEcc
Q 021291 190 QNSCGGS--------PNFSSK-----------GRGMCMAVQAYLP------SKS-----QGFVNVLAGYEDGSILVWDIR 239 (314)
Q Consensus 190 ~~~~~~~--------~~h~~~-----------~~~~~~~~~~~~p------~~~-----~g~~~l~~g~~dg~i~vwd~~ 239 (314)
.+.+... ..|... .........-|.+ ..+ +|. ++.+..+ |.|++.|+.
T Consensus 146 vp~~~~vy~t~e~~~~~~~~Dg~~~~v~~d~~g~~~~~~~~vf~~~~~~v~~rP~~~~~dg~-~~~vs~e-G~V~~id~~ 223 (352)
T TIGR02658 146 VPDCYHIFPTANDTFFMHCRDGSLAKVGYGTKGNPKIKPTEVFHPEDEYLINHPAYSNKSGR-LVWPTYT-GKIFQIDLS 223 (352)
T ss_pred CCCCcEEEEecCCccEEEeecCceEEEEecCCCceEEeeeeeecCCccccccCCceEcCCCc-EEEEecC-CeEEEEecC
Confidence 2210000 000000 0000001000222 111 355 5555555 999999964
Q ss_pred CC----CCceEeeec-------CCcceEEEEEeCCCCeEEEec----------CCCcEEEEecCCCeeeEee------ee
Q 021291 240 NP----GIPLTAMKV-------HLEPVLCLSIDESCNGGISGG----------ADQKIVLYNLDHSTYVLFG------IG 292 (314)
Q Consensus 240 ~~----~~~~~~~~~-------h~~~v~~~~~~~~~~~l~s~s----------~dg~i~iw~~~~~~~~~~~------~~ 292 (314)
.. ..+...+.. ..+.+.-++++++++.+.... ..+.|.++|..+++.+.++ .+
T Consensus 224 ~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~vG~~~~~ 303 (352)
T TIGR02658 224 SGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKTGKRLRKIELGHEIDS 303 (352)
T ss_pred CCcceecceeeeccccccccccCCCcceeEEEcCCCCEEEEEecCCccccccCCCCEEEEEECCCCeEEEEEeCCCceee
Confidence 31 222222221 223344599999998887642 1257999999999988863 46
Q ss_pred eeecCCCc
Q 021291 293 FVCDQEGN 300 (314)
Q Consensus 293 ~~~~~~~~ 300 (314)
+.++++++
T Consensus 304 iavS~Dgk 311 (352)
T TIGR02658 304 INVSQDAK 311 (352)
T ss_pred EEECCCCC
Confidence 77888887
No 269
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=99.06 E-value=3.6e-09 Score=89.75 Aligned_cols=213 Identities=14% Similarity=0.116 Sum_probs=140.4
Q ss_pred ceEEecCCCCceeEEEEccCCCEEEEecCCCeEEEEeCCCCeEEEEEeccCCcccEEEEEEcccCCCCeEEEeecCCeEE
Q 021291 10 PVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVK 89 (314)
Q Consensus 10 ~~~~l~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~v~ 89 (314)
.-++|.||++.|.-+.|+.+.+.|-|...+|.|.||-+-+|.....+......+.|.+++|+. +|..++..-.||.|.
T Consensus 63 mNQtLeGH~~sV~vvTWNe~~QKLTtSDt~GlIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~--dG~kIcIvYeDGavI 140 (1189)
T KOG2041|consen 63 MNQTLEGHNASVMVVTWNENNQKLTTSDTSGLIIVWMLYKGSWCEEMINNRNKSVVVSMSWNL--DGTKICIVYEDGAVI 140 (1189)
T ss_pred hhhhhccCcceEEEEEeccccccccccCCCceEEEEeeecccHHHHHhhCcCccEEEEEEEcC--CCcEEEEEEccCCEE
Confidence 457899999999999999999999999999999999998886554444444446699999999 999999999999998
Q ss_pred EEeCCCCCCCCCCeeeeecceeeEEEeeeeeccccccccCCCCcceeeccCCceeeecCCCCCCceeccCCCceEEEeec
Q 021291 90 CWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGE 169 (314)
Q Consensus 90 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 169 (314)
+=.++.++...+ .++...... +.|++|.+.+++ +-
T Consensus 141 VGsvdGNRIwgK---eLkg~~l~h----------------------------------------v~ws~D~~~~Lf--~~ 175 (1189)
T KOG2041|consen 141 VGSVDGNRIWGK---ELKGQLLAH----------------------------------------VLWSEDLEQALF--KK 175 (1189)
T ss_pred EEeeccceecch---hcchheccc----------------------------------------eeecccHHHHHh--hh
Confidence 877776543221 111111111 448888876664 44
Q ss_pred CcCeEEEEecCCCceeeeecccccCCCCCcCCCCCceeeeEE----EecCCCCCCceEEEEeecCCcEEEEEccCCCCce
Q 021291 170 QLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQ----AYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPL 245 (314)
Q Consensus 170 ~d~~i~vwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~----~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~ 245 (314)
.+|.+.+||.+..- ...+...+.++.+|-.......+-.+. .+-|..|+.. .++++..+|.+.+..-.+...|+
T Consensus 176 ange~hlydnqgnF-~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP-~lavcy~nGr~QiMR~eND~~Pv 253 (1189)
T KOG2041|consen 176 ANGETHLYDNQGNF-ERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRP-RLAVCYANGRMQIMRSENDPEPV 253 (1189)
T ss_pred cCCcEEEecccccH-HHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCCC-EEEEEEcCceehhhhhcCCCCCe
Confidence 56899999976321 111111111111111110001111221 1222223233 89999999999998776645665
Q ss_pred EeeecCCcceEEEEEeCCCCeEEEecCC
Q 021291 246 TAMKVHLEPVLCLSIDESCNGGISGGAD 273 (314)
Q Consensus 246 ~~~~~h~~~v~~~~~~~~~~~l~s~s~d 273 (314)
..-.+ -.|....|+++|..|+.++.|
T Consensus 254 v~dtg--m~~vgakWnh~G~vLAvcG~~ 279 (1189)
T KOG2041|consen 254 VVDTG--MKIVGAKWNHNGAVLAVCGND 279 (1189)
T ss_pred EEecc--cEeecceecCCCcEEEEccCc
Confidence 44333 678999999999999999875
No 270
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=99.05 E-value=5.8e-10 Score=60.17 Aligned_cols=38 Identities=16% Similarity=0.185 Sum_probs=36.2
Q ss_pred CceEeeecCCcceEEEEEeCCCCeEEEecCCCcEEEEe
Q 021291 243 IPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYN 280 (314)
Q Consensus 243 ~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~iw~ 280 (314)
+++.++.+|...|++|+|+|++.+|++++.|+.|++||
T Consensus 2 ~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 2 KCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred eEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 56789999999999999999999999999999999997
No 271
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.05 E-value=2.9e-09 Score=90.52 Aligned_cols=214 Identities=17% Similarity=0.250 Sum_probs=132.7
Q ss_pred CceEEecCCCCceeEEEEccC-CCEEEEecCCCeEEEEeCCCCe-EEEEEeccCCcccEEEEEEcccCCCCeEEEeecCC
Q 021291 9 DPVAVLRGHRASVTDVCFHQT-KPILFAGTTGGELRIWDTVQHR-TVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDG 86 (314)
Q Consensus 9 ~~~~~l~~h~~~v~~~~~~~~-~~~l~s~~~dg~v~iwd~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg 86 (314)
..-..+.||...|+.+-|+|+ ...|++++.|-.+..||++... .+..+..-. ..-..++|+-. + ..+++.+...
T Consensus 105 aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~~~w~--s~asqVkwnyk-~-p~vlasshg~ 180 (1081)
T KOG0309|consen 105 AIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYSTSSWR--SAASQVKWNYK-D-PNVLASSHGN 180 (1081)
T ss_pred ceEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCCcceeeeeccc--ccCceeeeccc-C-cchhhhccCC
Confidence 445577899999999999994 5689999999999999998754 444443333 33678999873 3 4444455567
Q ss_pred eEEEEeCCCCCCCCCCeeeeecceeeEEEeeeeeccccccccCCCCcceeeccCCceeeecCCCCCCceeccCCCceEEE
Q 021291 87 TVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAV 166 (314)
Q Consensus 87 ~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (314)
.|++||.+.+.. |...++.+...... ++|...-...+.
T Consensus 181 ~i~vwd~r~gs~---pl~s~K~~vs~vn~--------------------------------------~~fnr~~~s~~~- 218 (1081)
T KOG0309|consen 181 DIFVWDLRKGST---PLCSLKGHVSSVNS--------------------------------------IDFNRFKYSEIM- 218 (1081)
T ss_pred ceEEEeccCCCc---ceEEecccceeeeh--------------------------------------HHHhhhhhhhhc-
Confidence 899999998763 34444442111110 112211112233
Q ss_pred eecCcCeEEEEecCCCcee--eeecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEeecCCcE---------EE
Q 021291 167 AGEQLSEVEIWDLNTAERC--TRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSI---------LV 235 (314)
Q Consensus 167 ~g~~d~~i~vwd~~~~~~~--~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i---------~v 235 (314)
+.+.|++|++||....... +... ...+++.-. |.|-+. |. ++.---.+..+ ..
T Consensus 219 s~~~d~tvkfw~y~kSt~e~~~~vt-------------t~~piw~~r-~~Pfg~-g~-~~mp~~G~n~v~~~~c~n~d~e 282 (1081)
T KOG0309|consen 219 SSSNDGTVKFWDYSKSTTESKRTVT-------------TNFPIWRGR-YLPFGE-GY-CIMPMVGGNMVPQLRCENSDLE 282 (1081)
T ss_pred ccCCCCceeeecccccccccceecc-------------ccCcceecc-ccccCc-ee-EeccccCCeeeeeccccchhhh
Confidence 5677999999998754322 2222 122333333 666532 32 22211112233 34
Q ss_pred EEccCCCCceEeeecCCcceEEEEEeC----------CCCeEEEecCCCcEEEEecCCC
Q 021291 236 WDIRNPGIPLTAMKVHLEPVLCLSIDE----------SCNGGISGGADQKIVLYNLDHS 284 (314)
Q Consensus 236 wd~~~~~~~~~~~~~h~~~v~~~~~~~----------~~~~l~s~s~dg~i~iw~~~~~ 284 (314)
|+..+..++++.+.||.+.|...-|-. ..-.|+|-|.|..+++|-+...
T Consensus 283 ~n~~~~~~pVh~F~GH~D~V~eFlWR~r~e~~~d~d~rdfQLVTWSkD~~lrlWpI~~~ 341 (1081)
T KOG0309|consen 283 WNVFDLNTPVHTFVGHDDVVLEFLWRKRKECDGDYDSRDFQLVTWSKDQTLRLWPIDSQ 341 (1081)
T ss_pred hccccCCcceeeecCcchHHHHHhhhhcccccCCCCccceeEEEeecCCceEeeeccHH
Confidence 555555689999999999988777721 1225899999999999988643
No 272
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=99.04 E-value=1.7e-07 Score=76.68 Aligned_cols=246 Identities=11% Similarity=0.009 Sum_probs=154.0
Q ss_pred CceeEEEEccCCCEEEEecCCC---------------eEEEEeCCCCeEEEEEeccCCcccEE-EEEEcccCCCCeEEEe
Q 021291 19 ASVTDVCFHQTKPILFAGTTGG---------------ELRIWDTVQHRTVSSSWVHSAAHGIV-SVATGPSIGLNKVISQ 82 (314)
Q Consensus 19 ~~v~~~~~~~~~~~l~s~~~dg---------------~v~iwd~~~~~~~~~~~~~~~~~~v~-~~~~~~~~~~~~l~s~ 82 (314)
..|.-+.|+|.++||.+=+..+ .+.+||+.++..+..+.....+.-.+ -+.|+- +..+++=.
T Consensus 72 ~~V~~~~fSP~~kYL~tw~~~pi~~pe~e~sp~~~~n~~~vwd~~sg~iv~sf~~~~q~~~~Wp~~k~s~--~D~y~ARv 149 (561)
T COG5354 72 PDVKYLDFSPNEKYLVTWSREPIIEPEIEISPFTSKNNVFVWDIASGMIVFSFNGISQPYLGWPVLKFSI--DDKYVARV 149 (561)
T ss_pred CCceecccCcccceeeeeccCCccChhhccCCccccCceeEEeccCceeEeeccccCCcccccceeeeee--cchhhhhh
Confidence 4588899999999999876544 49999999999999887766432245 677877 65666543
Q ss_pred ecCCeEEEEeCCCCCCCCCCeeeeecceeeEEEeeeeecccc-c-----cccCCCCcceeeccCCceeeec-CCCCCC--
Q 021291 83 GRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYA-N-----AKQANEPKDCYEREVGETVDTD-SLCDSK-- 153 (314)
Q Consensus 83 ~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-----~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-- 153 (314)
. ...+.|+++ +.....-|...++......-.+++.+.... . .....+...++.+.....+... +..-++
T Consensus 150 v-~~sl~i~e~-t~n~~~~p~~~lr~~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lfk~~~~q 227 (561)
T COG5354 150 V-GSSLYIHEI-TDNIEEHPFKNLRPVGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLFKVSGVQ 227 (561)
T ss_pred c-cCeEEEEec-CCccccCchhhccccceeeEEecCCCCCceEEEEccccCCCCcEEEEEEccCCCeeeeeeeEeecccE
Confidence 2 347999997 444333233333333333333333321111 0 1112233444555444333222 222222
Q ss_pred ceeccCCCceEEEeecC---------cCeEEEEecCCCceeeeecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEE
Q 021291 154 DDVPAEGPKYMAVAGEQ---------LSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNV 224 (314)
Q Consensus 154 ~~~~~~~~~~~~~~g~~---------d~~i~vwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l 224 (314)
+.|.+.|+++++..-.. +..++|++++......... ..+.+...+ |.|.. .++.+
T Consensus 228 LkW~~~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~e~~i~V~~~-------------~~~pVhdf~-W~p~S--~~F~v 291 (561)
T COG5354 228 LKWQVLGKYLLVLVMTHTKSNKSYFGESNLYLLRITERSIPVEKD-------------LKDPVHDFT-WEPLS--SRFAV 291 (561)
T ss_pred EEEecCCceEEEEEEEeeecccceeccceEEEEeecccccceecc-------------ccccceeee-ecccC--CceeE
Confidence 78889998876643211 2567888887444332221 356788887 99984 34467
Q ss_pred EEeecCCcEEEEEccCCCCceEeeecCCcceEEEEEeCCCCeEEEecCC---CcEEEEecCCCeeeE
Q 021291 225 LAGYEDGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGAD---QKIVLYNLDHSTYVL 288 (314)
Q Consensus 225 ~~g~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d---g~i~iw~~~~~~~~~ 288 (314)
++|..+-.+.++|++. .... ......=+.+.|+|.+++++.++.| |.+-+||......+.
T Consensus 292 i~g~~pa~~s~~~lr~--Nl~~--~~Pe~~rNT~~fsp~~r~il~agF~nl~gni~i~~~~~rf~~~ 354 (561)
T COG5354 292 ISGYMPASVSVFDLRG--NLRF--YFPEQKRNTIFFSPHERYILFAGFDNLQGNIEIFDPAGRFKVA 354 (561)
T ss_pred Eecccccceeeccccc--ceEE--ecCCcccccccccCcccEEEEecCCccccceEEeccCCceEEE
Confidence 7788999999999994 4433 3345566788899999999998876 679999988776655
No 273
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.04 E-value=1.5e-09 Score=92.20 Aligned_cols=209 Identities=18% Similarity=0.262 Sum_probs=138.9
Q ss_pred CCceeEEEEccCCCEEEEecCCCeEEEEeCCCC-eEEEEEeccCCcccEEEEEEcccCCCCeEEEeecCCeEEEEeCCCC
Q 021291 18 RASVTDVCFHQTKPILFAGTTGGELRIWDTVQH-RTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENG 96 (314)
Q Consensus 18 ~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~ 96 (314)
.+++.++..+|.|+-+|.++.-| +.+-|+... ...+.+ .|..+-.|-.+.|+|...-.+-+.......-.+|++...
T Consensus 24 ~~~~~a~si~p~grdi~lAsr~g-l~i~dld~p~~ppr~l-~h~tpw~vad~qws~h~a~~~wiVsts~qkaiiwnlA~s 101 (1081)
T KOG0309|consen 24 DGGFNAVSINPSGRDIVLASRQG-LYIIDLDDPFTPPRWL-HHITPWQVADVQWSPHPAKPYWIVSTSNQKAIIWNLAKS 101 (1081)
T ss_pred cCcccceeeccccchhhhhhhcC-eEEEeccCCCCCceee-eccCcchhcceecccCCCCceeEEecCcchhhhhhhhcC
Confidence 46788999999999999999988 667787653 333333 344334578888988544344444334445568888643
Q ss_pred CCCCCCeeeeecceeeEEEeeeeeccccccccCCCCcceeeccCCceeeecCCCCCCceeccCCCceEEEeecCcCeEEE
Q 021291 97 GLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQLSEVEI 176 (314)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~v 176 (314)
.-.. ..+-++.+...... +.|.|+...+++ +++-|..+..
T Consensus 102 s~~a-Ief~lhghsraitd--------------------------------------~n~~~q~pdVla-tcsvdt~vh~ 141 (1081)
T KOG0309|consen 102 SSNA-IEFVLHGHSRAITD--------------------------------------INFNPQHPDVLA-TCSVDTYVHA 141 (1081)
T ss_pred Cccc-eEEEEecCccceec--------------------------------------cccCCCCCccee-ecccccccee
Confidence 3211 11222222211111 457787776666 6777999999
Q ss_pred EecCCCce-eeeecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEeecCCcEEEEEccCCCCceEeeecCCcce
Q 021291 177 WDLNTAER-CTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPV 255 (314)
Q Consensus 177 wd~~~~~~-~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~h~~~v 255 (314)
||+++... +..+.. -......+. |+-..+ .+.+.+..+.|.+||++.+..++..+++|...|
T Consensus 142 wd~rSp~~p~ys~~~------------w~s~asqVk-wnyk~p----~vlasshg~~i~vwd~r~gs~pl~s~K~~vs~v 204 (1081)
T KOG0309|consen 142 WDMRSPHRPFYSTSS------------WRSAASQVK-WNYKDP----NVLASSHGNDIFVWDLRKGSTPLCSLKGHVSSV 204 (1081)
T ss_pred eeccCCCcceeeeec------------ccccCceee-ecccCc----chhhhccCCceEEEeccCCCcceEEecccceee
Confidence 99998764 333321 122344555 775533 455566677899999999889999999999999
Q ss_pred EEEEEe-CCCCeEEEecCCCcEEEEecCCCe
Q 021291 256 LCLSID-ESCNGGISGGADQKIVLYNLDHST 285 (314)
Q Consensus 256 ~~~~~~-~~~~~l~s~s~dg~i~iw~~~~~~ 285 (314)
+.++|. .....+.+.+.||+|++||.+...
T Consensus 205 n~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt 235 (1081)
T KOG0309|consen 205 NSIDFNRFKYSEIMSSSNDGTVKFWDYSKST 235 (1081)
T ss_pred ehHHHhhhhhhhhcccCCCCceeeecccccc
Confidence 999994 333457999999999999987554
No 274
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=99.04 E-value=4.5e-07 Score=83.32 Aligned_cols=239 Identities=10% Similarity=0.079 Sum_probs=136.3
Q ss_pred CCCceeEEEEccCCCEEEEecCCCeEEEE----eCCCCeEEEEEeccCCcccEEEEEEcccCCCCeEEEeecCCeEEEEe
Q 021291 17 HRASVTDVCFHQTKPILFAGTTGGELRIW----DTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWD 92 (314)
Q Consensus 17 h~~~v~~~~~~~~~~~l~s~~~dg~v~iw----d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd 92 (314)
..+.|.++.|-++...++.+..+|.|.+. +..+...- ....-. .+|.+++||| |+..|+.+..+++|.+.+
T Consensus 74 ~~~~ivs~~yl~d~~~l~~~~~~Gdi~~~~~~~~~~~~~~E-~VG~vd--~GI~a~~WSP--D~Ella~vT~~~~l~~mt 148 (928)
T PF04762_consen 74 PNDKIVSFQYLADSESLCIALASGDIILVREDPDPDEDEIE-IVGSVD--SGILAASWSP--DEELLALVTGEGNLLLMT 148 (928)
T ss_pred CCCcEEEEEeccCCCcEEEEECCceEEEEEccCCCCCceeE-EEEEEc--CcEEEEEECC--CcCEEEEEeCCCEEEEEe
Confidence 35689999999999899999999999999 54443221 121122 4599999999 999999999999988874
Q ss_pred CCCCCCCCCCeeeeecceeeE-EEeeeeeccccccccCCCCcce-----eeccCCceeeecCC--CCCC-ceeccCCCce
Q 021291 93 IENGGLSSNPSLTIKTNSYHF-CKLSLVKEPYANAKQANEPKDC-----YEREVGETVDTDSL--CDSK-DDVPAEGPKY 163 (314)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~--~~~~-~~~~~~~~~~ 163 (314)
- +.+.+. ...+....... ..+++-+.....-. -|...+- .+....+.-...+. .... ++|-.||+++
T Consensus 149 ~-~fd~i~--E~~l~~~~~~~~~~VsVGWGkKeTQF-~Gs~gK~aa~~~~~p~~~~~d~~~~s~dd~~~~ISWRGDG~yF 224 (928)
T PF04762_consen 149 R-DFDPIS--EVPLDSDDFGESKHVSVGWGKKETQF-HGSAGKAAARQLRDPTVPKVDEGKLSWDDGRVRISWRGDGEYF 224 (928)
T ss_pred c-cceEEE--EeecCccccCCCceeeeccCcccCcc-CcchhhhhhhhccCCCCCccccCccccCCCceEEEECCCCcEE
Confidence 2 222211 11111111110 01111111000000 0000000 00000000001111 1111 8999999877
Q ss_pred EEEee--cC--cCeEEEEecCCCceeeeecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEeec---CCcEEEE
Q 021291 164 MAVAG--EQ--LSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYE---DGSILVW 236 (314)
Q Consensus 164 ~~~~g--~~--d~~i~vwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~---dg~i~vw 236 (314)
.+.+- .. -+.++||+-. |....+- .+..+.--+++ |.|. |. +||+... ...|.+|
T Consensus 225 AVss~~~~~~~~R~iRVy~Re-G~L~stS------------E~v~gLe~~l~-WrPs---G~-lIA~~q~~~~~~~VvFf 286 (928)
T PF04762_consen 225 AVSSVEPETGSRRVIRVYSRE-GELQSTS------------EPVDGLEGALS-WRPS---GN-LIASSQRLPDRHDVVFF 286 (928)
T ss_pred EEEEEEcCCCceeEEEEECCC-ceEEecc------------ccCCCccCCcc-CCCC---CC-EEEEEEEcCCCcEEEEE
Confidence 65443 12 2689999854 6543322 23455666666 9998 54 7776654 3457777
Q ss_pred EccCCCCceEeee----cCCcceEEEEEeCCCCeEEEecCCCcEEEEecCCCe
Q 021291 237 DIRNPGIPLTAMK----VHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHST 285 (314)
Q Consensus 237 d~~~~~~~~~~~~----~h~~~v~~~~~~~~~~~l~s~s~dg~i~iw~~~~~~ 285 (314)
.-+ |.....+. .....|..|.|+.++..|+..-.|. |.+|-..+..
T Consensus 287 ErN--GLrhgeF~l~~~~~~~~v~~l~Wn~ds~iLAv~~~~~-vqLWt~~NYH 336 (928)
T PF04762_consen 287 ERN--GLRHGEFTLRFDPEEEKVIELAWNSDSEILAVWLEDR-VQLWTRSNYH 336 (928)
T ss_pred ecC--CcEeeeEecCCCCCCceeeEEEECCCCCEEEEEecCC-ceEEEeeCCE
Confidence 644 44333333 3456899999999999998876665 9999887765
No 275
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=99.03 E-value=3.5e-07 Score=76.75 Aligned_cols=228 Identities=14% Similarity=0.087 Sum_probs=125.5
Q ss_pred CCCEEEEecCCCeEEEEeCCCCeEEEEEeccCCcccEEEEEEcccCCCCeEEEeecCCeEEEEeCCCCCCCCCCeeeeec
Q 021291 29 TKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGGLSSNPSLTIKT 108 (314)
Q Consensus 29 ~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~ 108 (314)
++..++.++.+|.+..+|..+|+.+....... .+.+.-.. .+..++.++.++.|..||.++++.+.+ .....
T Consensus 104 ~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~---~~~~~p~v---~~~~v~v~~~~g~l~a~d~~tG~~~W~--~~~~~ 175 (377)
T TIGR03300 104 DGGLVFVGTEKGEVIALDAEDGKELWRAKLSS---EVLSPPLV---ANGLVVVRTNDGRLTALDAATGERLWT--YSRVT 175 (377)
T ss_pred cCCEEEEEcCCCEEEEEECCCCcEeeeeccCc---eeecCCEE---ECCEEEEECCCCeEEEEEcCCCceeeE--EccCC
Confidence 45678888999999999999999887665432 13221111 235677778899999999999986552 11111
Q ss_pred ceeeEE-Eeeeee-ccccccccCCCCcceeeccCCceeeec-CC---CCCC------ceecc--CCCceEEEeecCcCeE
Q 021291 109 NSYHFC-KLSLVK-EPYANAKQANEPKDCYEREVGETVDTD-SL---CDSK------DDVPA--EGPKYMAVAGEQLSEV 174 (314)
Q Consensus 109 ~~~~~~-~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~---~~~~------~~~~~--~~~~~~~~~g~~d~~i 174 (314)
...... ..++.. ..........+....++...++..-.. .. +... ..-+| .+..+++ ++.++.+
T Consensus 176 ~~~~~~~~~sp~~~~~~v~~~~~~g~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~~~~~vy~--~~~~g~l 253 (377)
T TIGR03300 176 PALTLRGSASPVIADGGVLVGFAGGKLVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPVVDGGQVYA--VSYQGRV 253 (377)
T ss_pred CceeecCCCCCEEECCEEEEECCCCEEEEEEccCCCEeeeeccccCCCCCchhhhhccCCccEEECCEEEE--EEcCCEE
Confidence 100000 000000 011111112223333344444322111 00 0000 00011 2344443 4457999
Q ss_pred EEEecCCCceeeeecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEeecCCcEEEEEccCCCCceEeeecCC-c
Q 021291 175 EIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHL-E 253 (314)
Q Consensus 175 ~vwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~h~-~ 253 (314)
+.||.++++.+..... .. ..... .. +. .+++++.+|.|+.+|..+ ++.+....... .
T Consensus 254 ~a~d~~tG~~~W~~~~-------------~~-~~~p~-~~-----~~-~vyv~~~~G~l~~~d~~t-G~~~W~~~~~~~~ 311 (377)
T TIGR03300 254 AALDLRSGRVLWKRDA-------------SS-YQGPA-VD-----DN-RLYVTDADGVVVALDRRS-GSELWKNDELKYR 311 (377)
T ss_pred EEEECCCCcEEEeecc-------------CC-ccCce-Ee-----CC-EEEEECCCCeEEEEECCC-CcEEEccccccCC
Confidence 9999999987655441 00 11111 22 22 677788899999999987 66665442211 1
Q ss_pred ceEEEEEeCCCCeEEEecCCCcEEEEecCCCeeeEee
Q 021291 254 PVLCLSIDESCNGGISGGADQKIVLYNLDHSTYVLFG 290 (314)
Q Consensus 254 ~v~~~~~~~~~~~l~s~s~dg~i~iw~~~~~~~~~~~ 290 (314)
...+.... +..|++++.+|.|+++|.++++.++..
T Consensus 312 ~~ssp~i~--g~~l~~~~~~G~l~~~d~~tG~~~~~~ 346 (377)
T TIGR03300 312 QLTAPAVV--GGYLVVGDFEGYLHWLSREDGSFVARL 346 (377)
T ss_pred ccccCEEE--CCEEEEEeCCCEEEEEECCCCCEEEEE
Confidence 22222222 347888999999999999999988764
No 276
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=99.02 E-value=8.7e-09 Score=81.45 Aligned_cols=79 Identities=18% Similarity=0.209 Sum_probs=65.3
Q ss_pred CceeeeEEEecCCCCCCceEEEEeecCCcEEEEEccCCCCceEee-ecCCcceEEEEEeCCCCeEEEecCCCcEEEEecC
Q 021291 204 RGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAM-KVHLEPVLCLSIDESCNGGISGGADQKIVLYNLD 282 (314)
Q Consensus 204 ~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~~~~-~~h~~~v~~~~~~~~~~~l~s~s~dg~i~iw~~~ 282 (314)
-.+++.++ ++|| ++ +|+++..|..|++-.... ...+..+ -||..-|..++.-++.. |+++|.|++|++||+.
T Consensus 151 vSml~dVa-vS~D---~~-~IitaDRDEkIRvs~ypa-~f~IesfclGH~eFVS~isl~~~~~-LlS~sGD~tlr~Wd~~ 223 (390)
T KOG3914|consen 151 VSMLLDVA-VSPD---DQ-FIITADRDEKIRVSRYPA-TFVIESFCLGHKEFVSTISLTDNYL-LLSGSGDKTLRLWDIT 223 (390)
T ss_pred hhhhheee-ecCC---CC-EEEEecCCceEEEEecCc-ccchhhhccccHhheeeeeeccCce-eeecCCCCcEEEEecc
Confidence 55888998 9998 44 999999999999988775 3344443 48999999999977654 8999999999999999
Q ss_pred CCeeeEe
Q 021291 283 HSTYVLF 289 (314)
Q Consensus 283 ~~~~~~~ 289 (314)
+++.+..
T Consensus 224 sgk~L~t 230 (390)
T KOG3914|consen 224 SGKLLDT 230 (390)
T ss_pred cCCcccc
Confidence 9998743
No 277
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=99.02 E-value=6e-07 Score=70.26 Aligned_cols=193 Identities=15% Similarity=0.143 Sum_probs=116.2
Q ss_pred CCCEEEEecCCCeEEEEeCCCCeEEEEEeccCCcccEEEEEEcccCCCCeEEEeecCCeEEEEeCCCCCCCCCCeeee-e
Q 021291 29 TKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGGLSSNPSLTI-K 107 (314)
Q Consensus 29 ~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~-~ 107 (314)
++..+++++.++.|..||..+|+.+..+......... . .. .+..++.++.++.|..+|..+++... .. .
T Consensus 35 ~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~--~-~~---~~~~v~v~~~~~~l~~~d~~tG~~~W----~~~~ 104 (238)
T PF13360_consen 35 DGGRVYVASGDGNLYALDAKTGKVLWRFDLPGPISGA--P-VV---DGGRVYVGTSDGSLYALDAKTGKVLW----SIYL 104 (238)
T ss_dssp ETTEEEEEETTSEEEEEETTTSEEEEEEECSSCGGSG--E-EE---ETTEEEEEETTSEEEEEETTTSCEEE----EEEE
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEEeeccccccce--e-ee---cccccccccceeeeEecccCCcceee----eecc
Confidence 5667888889999999999999999888763321111 1 21 34677777788899999999997644 21 1
Q ss_pred cc-eeeEEEeeeeeccccccccCCCCcceeeccCCceeeecCCCCCCceeccCCCceEEEeecCcCeEEEEecCCCceee
Q 021291 108 TN-SYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCT 186 (314)
Q Consensus 108 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~vwd~~~~~~~~ 186 (314)
.. +...... .......++.+++ +..++.|..+|+++|+.+.
T Consensus 105 ~~~~~~~~~~------------------------------------~~~~~~~~~~~~~--~~~~g~l~~~d~~tG~~~w 146 (238)
T PF13360_consen 105 TSSPPAGVRS------------------------------------SSSPAVDGDRLYV--GTSSGKLVALDPKTGKLLW 146 (238)
T ss_dssp -SSCTCSTB--------------------------------------SEEEEETTEEEE--EETCSEEEEEETTTTEEEE
T ss_pred cccccccccc------------------------------------ccCceEecCEEEE--EeccCcEEEEecCCCcEEE
Confidence 10 0000000 0112223454543 3336999999999999987
Q ss_pred eecccccCCCCCcCCCCCc-------eeeeEEEecCCCCCCceEEEEeecCCc-EEEEEccCCCCceEeeecCCcceEEE
Q 021291 187 RLHQNSCGGSPNFSSKGRG-------MCMAVQAYLPSKSQGFVNVLAGYEDGS-ILVWDIRNPGIPLTAMKVHLEPVLCL 258 (314)
Q Consensus 187 ~~~~~~~~~~~~h~~~~~~-------~~~~~~~~~p~~~~g~~~l~~g~~dg~-i~vwd~~~~~~~~~~~~~h~~~v~~~ 258 (314)
.... ....... ....+. +. + + .++.+..++. +.+ |+.+ ++.+.... ...+..+
T Consensus 147 ~~~~--------~~~~~~~~~~~~~~~~~~~~-~~-~---~--~v~~~~~~g~~~~~-d~~t-g~~~w~~~--~~~~~~~ 207 (238)
T PF13360_consen 147 KYPV--------GEPRGSSPISSFSDINGSPV-IS-D---G--RVYVSSGDGRVVAV-DLAT-GEKLWSKP--ISGIYSL 207 (238)
T ss_dssp EEES--------STT-SS--EEEETTEEEEEE-CC-T---T--EEEEECCTSSEEEE-ETTT-TEEEEEEC--SS-ECEC
T ss_pred Eeec--------CCCCCCcceeeecccccceE-EE-C---C--EEEEEcCCCeEEEE-ECCC-CCEEEEec--CCCccCC
Confidence 7762 1111111 112221 22 1 3 5666666665 555 9998 65443322 2222221
Q ss_pred EEeCCCCeEEEecCCCcEEEEecCCCeeeEe
Q 021291 259 SIDESCNGGISGGADQKIVLYNLDHSTYVLF 289 (314)
Q Consensus 259 ~~~~~~~~l~s~s~dg~i~iw~~~~~~~~~~ 289 (314)
....+..|+.++.++.|..||+++++.+++
T Consensus 208 -~~~~~~~l~~~~~~~~l~~~d~~tG~~~W~ 237 (238)
T PF13360_consen 208 -PSVDGGTLYVTSSDGRLYALDLKTGKVVWQ 237 (238)
T ss_dssp -EECCCTEEEEEETTTEEEEEETTTTEEEEE
T ss_pred -ceeeCCEEEEEeCCCEEEEEECCCCCEEeE
Confidence 345566777777999999999999998874
No 278
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=99.01 E-value=8.6e-07 Score=69.72 Aligned_cols=230 Identities=10% Similarity=0.072 Sum_probs=130.7
Q ss_pred CCeEEEEeCCCCe-EEEEEeccCCcccEEEEEEcccCCCCeEEEeecC---CeEEEEeCCC--CCCCCCCeeeeecceee
Q 021291 39 GGELRIWDTVQHR-TVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRD---GTVKCWDIEN--GGLSSNPSLTIKTNSYH 112 (314)
Q Consensus 39 dg~v~iwd~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d---g~v~iwd~~~--~~~~~~~~~~~~~~~~~ 112 (314)
+.-|.+|++++.. .+..++.-.....++-|+|+| +.+.|.++-.+ |.|.-|.++. +++...........+..
T Consensus 15 s~gI~v~~ld~~~g~l~~~~~v~~~~nptyl~~~~--~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~ 92 (346)
T COG2706 15 SQGIYVFNLDTKTGELSLLQLVAELGNPTYLAVNP--DQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPC 92 (346)
T ss_pred CCceEEEEEeCcccccchhhhccccCCCceEEECC--CCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCe
Confidence 4569999988422 222222111124489999999 88889887654 6777777764 44321101112222222
Q ss_pred EEEeeeeeccccccccCCCCcceeeccCCceee---------------ecCCCCCC-ceeccCCCceEEEeecCcCeEEE
Q 021291 113 FCKLSLVKEPYANAKQANEPKDCYEREVGETVD---------------TDSLCDSK-DDVPAEGPKYMAVAGEQLSEVEI 176 (314)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~-~~~~~~~~~~~~~~g~~d~~i~v 176 (314)
...++..+..........+...++.+.....+. .....|.. ..+.|+++++++..=+.| .|.+
T Consensus 93 yvsvd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~D-ri~~ 171 (346)
T COG2706 93 YVSVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTD-RIFL 171 (346)
T ss_pred EEEECCCCCEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCc-eEEE
Confidence 223333333334444445555555553321110 01112222 778899988876554544 6999
Q ss_pred EecCCCceeeeecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEeecCCcEEEEEccCCCCceEeeecC-----
Q 021291 177 WDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVH----- 251 (314)
Q Consensus 177 wd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~h----- 251 (314)
|++..+.....-. .+. +...-..-+. |+|+ ++...+..-.+++|.+|........+..++.+
T Consensus 172 y~~~dg~L~~~~~--------~~v-~~G~GPRHi~-FHpn---~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~ 238 (346)
T COG2706 172 YDLDDGKLTPADP--------AEV-KPGAGPRHIV-FHPN---GKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPE 238 (346)
T ss_pred EEcccCccccccc--------ccc-CCCCCcceEE-EcCC---CcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCcc
Confidence 9999776433222 111 1222344555 9998 66555667779999999998743444444432
Q ss_pred ----CcceEEEEEeCCCCeEEEecC-CCcEEEEecCCC
Q 021291 252 ----LEPVLCLSIDESCNGGISGGA-DQKIVLYNLDHS 284 (314)
Q Consensus 252 ----~~~v~~~~~~~~~~~l~s~s~-dg~i~iw~~~~~ 284 (314)
......|..+++|++|.++.. ...|-+|.++..
T Consensus 239 dF~g~~~~aaIhis~dGrFLYasNRg~dsI~~f~V~~~ 276 (346)
T COG2706 239 DFTGTNWAAAIHISPDGRFLYASNRGHDSIAVFSVDPD 276 (346)
T ss_pred ccCCCCceeEEEECCCCCEEEEecCCCCeEEEEEEcCC
Confidence 235667788999999876643 447888877655
No 279
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=98.98 E-value=1.5e-07 Score=70.83 Aligned_cols=197 Identities=11% Similarity=0.002 Sum_probs=118.3
Q ss_pred EEEecCCCeEEEEeCCCCeEEEEEeccCCcccEEEEEEcccCCCCeEEEeecCCeEEEEeCCCCCCCCCCeeeeecceee
Q 021291 33 LFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYH 112 (314)
Q Consensus 33 l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~ 112 (314)
+..++.|.++++.+++-+..... .|...-.+.++++++ ++.++++.+....|..|.+...................
T Consensus 131 ~~i~sndht~k~~~~~~~s~~~~--~h~~~~~~ns~~~sn--d~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~g 206 (344)
T KOG4532|consen 131 LNIASNDHTGKTMVVSGDSNKFA--VHNQNLTQNSLHYSN--DPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHG 206 (344)
T ss_pred eeeccCCcceeEEEEecCcccce--eeccccceeeeEEcC--CCceEEEecCCCcceEEEeCCccceeeeeEecccCCCc
Confidence 55567777777777654332222 232212278899999 99999999999999999987643211101111111112
Q ss_pred EEEeeeeeccccccccCCCCcceeeccCCceeeecCCCCCCceeccCCCceEEEeecCcCeEEEEecCCCceeeeecccc
Q 021291 113 FCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNS 192 (314)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~vwd~~~~~~~~~~~~~~ 192 (314)
++ .+|+.... ..+.+..||++.|||++..........
T Consensus 207 F~---------------------------------------~S~s~~~~--~FAv~~Qdg~~~I~DVR~~~tpm~~~s-- 243 (344)
T KOG4532|consen 207 FY---------------------------------------NSFSENDL--QFAVVFQDGTCAIYDVRNMATPMAEIS-- 243 (344)
T ss_pred ee---------------------------------------eeeccCcc--eEEEEecCCcEEEEEecccccchhhhc--
Confidence 21 34555543 333678899999999997665444332
Q ss_pred cCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEeecCCcEEEEEccCCCCceEeee-------cCCcc-eEEEEEeCCC
Q 021291 193 CGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMK-------VHLEP-VLCLSIDESC 264 (314)
Q Consensus 193 ~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~~~~~-------~h~~~-v~~~~~~~~~ 264 (314)
....| +.+.+..+. |+|-++.+ +|+..-.-+.+.+.|+++ ....+.+. .|... |..-.|+.++
T Consensus 244 --strp~---hnGa~R~c~-Fsl~g~lD--LLf~sEhfs~~hv~D~R~-~~~~q~I~i~~d~~~~~~tq~ifgt~f~~~n 314 (344)
T KOG4532|consen 244 --STRPH---HNGAFRVCR-FSLYGLLD--LLFISEHFSRVHVVDTRN-YVNHQVIVIPDDVERKHNTQHIFGTNFNNEN 314 (344)
T ss_pred --ccCCC---CCCceEEEE-ecCCCcce--EEEEecCcceEEEEEccc-CceeeEEecCccccccccccccccccccCCC
Confidence 11122 567777777 99876533 455444557899999998 44333222 23333 7777786666
Q ss_pred CeEEEecCCCcEEEEecCCCee
Q 021291 265 NGGISGGADQKIVLYNLDHSTY 286 (314)
Q Consensus 265 ~~l~s~s~dg~i~iw~~~~~~~ 286 (314)
..+.+.+.+ .+.-|++.....
T Consensus 315 ~s~~v~~e~-~~ae~ni~srsR 335 (344)
T KOG4532|consen 315 ESNDVKNEL-QGAEYNILSRSR 335 (344)
T ss_pred cccccccch-hhheeeccccce
Confidence 655555544 366677766544
No 280
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.97 E-value=1.3e-09 Score=94.53 Aligned_cols=198 Identities=18% Similarity=0.289 Sum_probs=130.6
Q ss_pred CceEEecCCCCceeEEEEccCCCEEEEecCCCeEEEEeCCCCeEEEEEeccCCcccEEEEEEcccCCCCeEEEeec-CC-
Q 021291 9 DPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGR-DG- 86 (314)
Q Consensus 9 ~~~~~l~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~-dg- 86 (314)
+..++|+.|+..-+|++|+-+.++|+.|+..|.|+++++.+|........|..+ |+-+.-+. +|..+++.+. ..
T Consensus 1092 r~w~~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~s~ncH~Sa--vT~vePs~--dgs~~Ltsss~S~P 1167 (1516)
T KOG1832|consen 1092 RSWRSFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEESVNCHQSA--VTLVEPSV--DGSTQLTSSSSSSP 1167 (1516)
T ss_pred ccchhhhccccceeeEEeecCCceEEeeeccceEEEEEccCccccccccccccc--cccccccC--CcceeeeeccccCc
Confidence 567788999999999999999999999999999999999999999999999855 99998888 8887775544 32
Q ss_pred eEEEEeCCCCCCCCCCeeeeecceeeEEEeeeeeccccccccCCCCcceeeccCCceeeecCCCCCC-------ceeccC
Q 021291 87 TVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSK-------DDVPAE 159 (314)
Q Consensus 87 ~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~ 159 (314)
-..+|++...- .+..++... ....|+-. .........+....+|++.+.......+.+... ..|+|+
T Consensus 1168 lsaLW~~~s~~---~~~Hsf~ed--~~vkFsn~-~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~FsP~ 1241 (1516)
T KOG1832|consen 1168 LSALWDASSTG---GPRHSFDED--KAVKFSNS-LQFRALGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFSPC 1241 (1516)
T ss_pred hHHHhcccccc---Ccccccccc--ceeehhhh-HHHHHhcccccceEEEecccCcHHHHhcCcchhhhhhccccccCCC
Confidence 57899987521 112222221 11222211 112222333344566777666554443332211 789999
Q ss_pred CCceEEEeecCcCeEEEEecCCCceeeeecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEeecCCcEEEEEcc
Q 021291 160 GPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIR 239 (314)
Q Consensus 160 ~~~~~~~~g~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~ 239 (314)
...++ .|| .+||.+..+.+..|. .......+ .|+|. |. -++..+ .|||++
T Consensus 1242 D~LIl-----ndG--vLWDvR~~~aIh~FD--------~ft~~~~G------~FHP~---g~-eVIINS-----EIwD~R 1291 (1516)
T KOG1832|consen 1242 DTLIL-----NDG--VLWDVRIPEAIHRFD--------QFTDYGGG------GFHPS---GN-EVIINS-----EIWDMR 1291 (1516)
T ss_pred cceEe-----eCc--eeeeeccHHHHhhhh--------hheecccc------cccCC---Cc-eEEeec-----hhhhhH
Confidence 86443 255 689999998888887 33222222 39998 44 455544 389999
Q ss_pred CCCCceEe
Q 021291 240 NPGIPLTA 247 (314)
Q Consensus 240 ~~~~~~~~ 247 (314)
+ -+.++.
T Consensus 1292 T-F~lLh~ 1298 (1516)
T KOG1832|consen 1292 T-FKLLHS 1298 (1516)
T ss_pred H-HHHHhc
Confidence 7 554443
No 281
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.97 E-value=1.4e-07 Score=74.86 Aligned_cols=85 Identities=19% Similarity=0.231 Sum_probs=72.1
Q ss_pred CceEEecCCCCceeEEEEccCCC-EEEEecCCCeEEEEeCCCCeEEEEEeccCCcccEEEEEEcccCCCCeEEEeecCCe
Q 021291 9 DPVAVLRGHRASVTDVCFHQTKP-ILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGT 87 (314)
Q Consensus 9 ~~~~~l~~h~~~v~~~~~~~~~~-~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~ 87 (314)
+..+.+.+|...|..++|+|..+ ++..++.+..|+|.|+++...+..+..+ ..+++++|.-. +.++++.|...|.
T Consensus 184 kssq~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~---~~~wSC~wDld-e~h~IYaGl~nG~ 259 (463)
T KOG1645|consen 184 KSSQILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAY---NQIWSCCWDLD-ERHVIYAGLQNGM 259 (463)
T ss_pred chhhcccccchhhhhhccCccccceeeeeccCceEEEEecccceeeeheecc---CCceeeeeccC-CcceeEEeccCce
Confidence 34556778889999999999665 7888999999999999999888888777 45999999874 4577888999999
Q ss_pred EEEEeCCCCC
Q 021291 88 VKCWDIENGG 97 (314)
Q Consensus 88 v~iwd~~~~~ 97 (314)
|.|||++..+
T Consensus 260 VlvyD~R~~~ 269 (463)
T KOG1645|consen 260 VLVYDMRQPE 269 (463)
T ss_pred EEEEEccCCC
Confidence 9999998765
No 282
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=98.97 E-value=3.3e-06 Score=68.89 Aligned_cols=128 Identities=17% Similarity=0.136 Sum_probs=93.3
Q ss_pred ceeccCCCceEEEeecCcC-eEEEEecCCCceeeeecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEeecCCc
Q 021291 154 DDVPAEGPKYMAVAGEQLS-EVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGS 232 (314)
Q Consensus 154 ~~~~~~~~~~~~~~g~~d~-~i~vwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~ 232 (314)
..+..+++..+ .|..|| .+-+||..+++..+... .-+.+.++. .+|+ |+ +++++.....
T Consensus 365 ~r~~~~~e~~v--igt~dgD~l~iyd~~~~e~kr~e~-------------~lg~I~av~-vs~d---GK-~~vvaNdr~e 424 (668)
T COG4946 365 RRIQVDPEGDV--IGTNDGDKLGIYDKDGGEVKRIEK-------------DLGNIEAVK-VSPD---GK-KVVVANDRFE 424 (668)
T ss_pred EEEccCCcceE--EeccCCceEEEEecCCceEEEeeC-------------CccceEEEE-EcCC---Cc-EEEEEcCceE
Confidence 44555555444 466777 89999999887544333 356788887 9998 55 8999999999
Q ss_pred EEEEEccCCCCceEeeecCCcceEEEEEeCCCCeEEEecCCC----cEEEEecCCCeeeEee--e----eeeecCCCcee
Q 021291 233 ILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQ----KIVLYNLDHSTYVLFG--I----GFVCDQEGNKF 302 (314)
Q Consensus 233 i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg----~i~iw~~~~~~~~~~~--~----~~~~~~~~~~~ 302 (314)
|.+.|+.+ +.+...-+...+-|+.++|+|+++++|-+=-+| .|+++|+..++..... . .-+++|+++.+
T Consensus 425 l~vididn-gnv~~idkS~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~~Kiy~vTT~ta~DfsPaFD~d~ryL 503 (668)
T COG4946 425 LWVIDIDN-GNVRLIDKSEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGGKIYDVTTPTAYDFSPAFDPDGRYL 503 (668)
T ss_pred EEEEEecC-CCeeEecccccceeEEEEEcCCceeEEEecCcceeeeeEEEEecCCCeEEEecCCcccccCcccCCCCcEE
Confidence 99999998 666555555677899999999999998876665 5899999987754431 1 12356666654
No 283
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=98.95 E-value=6.6e-07 Score=67.51 Aligned_cols=205 Identities=10% Similarity=0.049 Sum_probs=123.9
Q ss_pred EEEEcc-----CCCEEEEecCCCeEEEEeCCCCeEEEEE-eccCCcccEEEEE-EcccCCCCeEEEeecCCeEEEEeCCC
Q 021291 23 DVCFHQ-----TKPILFAGTTGGELRIWDTVQHRTVSSS-WVHSAAHGIVSVA-TGPSIGLNKVISQGRDGTVKCWDIEN 95 (314)
Q Consensus 23 ~~~~~~-----~~~~l~s~~~dg~v~iwd~~~~~~~~~~-~~~~~~~~v~~~~-~~~~~~~~~l~s~~~dg~v~iwd~~~ 95 (314)
.+.|-| .-.+||.|+.-|...+|...+.+....+ ..+.. .|+-+. +.. ..-.+..++.|.++++.+++.
T Consensus 72 g~~F~p~s~~~kc~~la~gG~~g~fd~~~~~tn~~h~~~cd~snn--~v~~~~r~cd--~~~~~~i~sndht~k~~~~~~ 147 (344)
T KOG4532|consen 72 GMTFTPGSFINKCVTLADGGASGQFDLFACNTNDGHLYQCDVSNN--DVTLVKRYCD--LKFPLNIASNDHTGKTMVVSG 147 (344)
T ss_pred cccccchHhhccccEEEeccccceeeeecccCcccceeeeccccc--chhhhhhhcc--cccceeeccCCcceeEEEEec
Confidence 355665 2348999999999999998865433222 22321 122111 111 224567788899999999876
Q ss_pred CCCCCCCeeeeecceeeEEEeeeeeccccccccCCCCcceeeccCCceeeecCCCCCCceeccCCCceEEEeecCcCeEE
Q 021291 96 GGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQLSEVE 175 (314)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~ 175 (314)
+.... ..+..... ..+ +++++++.. +++.|. ...|.
T Consensus 148 ~s~~~----~~h~~~~~--~ns------------------------------------~~~snd~~~-~~~Vgd-s~~Vf 183 (344)
T KOG4532|consen 148 DSNKF----AVHNQNLT--QNS------------------------------------LHYSNDPSW-GSSVGD-SRRVF 183 (344)
T ss_pred Ccccc----eeeccccc--eee------------------------------------eEEcCCCce-EEEecC-CCcce
Confidence 54322 11111110 001 457788764 444454 47899
Q ss_pred EEecCC-CceeeeecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEeecCCcEEEEEccCCCCceEeee----c
Q 021291 176 IWDLNT-AERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMK----V 250 (314)
Q Consensus 176 vwd~~~-~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~~~~~----~ 250 (314)
+|.+.. ++.+..... +- ....-.+.. |+.. .. .+|++..||++.|||++..+.+..... .
T Consensus 184 ~y~id~~sey~~~~~~-------a~---t~D~gF~~S-~s~~---~~-~FAv~~Qdg~~~I~DVR~~~tpm~~~sstrp~ 248 (344)
T KOG4532|consen 184 RYAIDDESEYIENIYE-------AP---TSDHGFYNS-FSEN---DL-QFAVVFQDGTCAIYDVRNMATPMAEISSTRPH 248 (344)
T ss_pred EEEeCCccceeeeeEe-------cc---cCCCceeee-eccC---cc-eEEEEecCCcEEEEEecccccchhhhcccCCC
Confidence 998764 333222211 11 111223333 7765 22 899999999999999998777665443 5
Q ss_pred CCcceEEEEEeCCCC--eEEEecCCCcEEEEecCCCeeeEee
Q 021291 251 HLEPVLCLSIDESCN--GGISGGADQKIVLYNLDHSTYVLFG 290 (314)
Q Consensus 251 h~~~v~~~~~~~~~~--~l~s~s~dg~i~iw~~~~~~~~~~~ 290 (314)
|.+.+..+.|++.|. +|+-.-.=+.+.+-|+++++....+
T Consensus 249 hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~~~q~I 290 (344)
T KOG4532|consen 249 HNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYVNHQVI 290 (344)
T ss_pred CCCceEEEEecCCCcceEEEEecCcceEEEEEcccCceeeEE
Confidence 888999999986554 2344444568999999998776653
No 284
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=98.93 E-value=3.7e-07 Score=74.69 Aligned_cols=236 Identities=12% Similarity=0.099 Sum_probs=140.8
Q ss_pred CCCceeEEEEccCCCEEEEecCCCeEEEEeCCCCeEEEEEeccCCcccEEEEEEcccCCCCeEEEeecCC----------
Q 021291 17 HRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDG---------- 86 (314)
Q Consensus 17 h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg---------- 86 (314)
-.-++..++|||.|.+|++....| |.+|.-.....+..+... .|..+.|+| ++++|.+=+..+
T Consensus 31 ~~~p~~~~~~SP~G~~l~~~~~~~-V~~~~g~~~~~l~~~~~~----~V~~~~fSP--~~kYL~tw~~~pi~~pe~e~sp 103 (561)
T COG5354 31 ENWPVAYVSESPLGTYLFSEHAAG-VECWGGPSKAKLVRFRHP----DVKYLDFSP--NEKYLVTWSREPIIEPEIEISP 103 (561)
T ss_pred cCcchhheeecCcchheehhhccc-eEEccccchhheeeeecC----CceecccCc--ccceeeeeccCCccChhhccCC
Confidence 456788999999999999988876 899998776666555433 399999999 999999866543
Q ss_pred -----eEEEEeCCCCCCCCCCeeeeecceee-----EEEeeeeeccccccccCCCCcceeeccCCceee---ecCC--CC
Q 021291 87 -----TVKCWDIENGGLSSNPSLTIKTNSYH-----FCKLSLVKEPYANAKQANEPKDCYEREVGETVD---TDSL--CD 151 (314)
Q Consensus 87 -----~v~iwd~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~--~~ 151 (314)
.+.+||+.++.++. .+...... ...++...... .-..+....++.+ ...... ..+. +-
T Consensus 104 ~~~~n~~~vwd~~sg~iv~----sf~~~~q~~~~Wp~~k~s~~D~y~--ARvv~~sl~i~e~-t~n~~~~p~~~lr~~gi 176 (561)
T COG5354 104 FTSKNNVFVWDIASGMIVF----SFNGISQPYLGWPVLKFSIDDKYV--ARVVGSSLYIHEI-TDNIEEHPFKNLRPVGI 176 (561)
T ss_pred ccccCceeEEeccCceeEe----eccccCCcccccceeeeeecchhh--hhhccCeEEEEec-CCccccCchhhccccce
Confidence 49999999987643 22222111 22333332222 2224444555554 211111 1111 11
Q ss_pred CCceeccCCCceEEE-----eecCcCeEEEEecCCCceeeeecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEE
Q 021291 152 SKDDVPAEGPKYMAV-----AGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLA 226 (314)
Q Consensus 152 ~~~~~~~~~~~~~~~-----~g~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~ 226 (314)
.+.+|+|.++.--++ .+..++.+++|.+..+..+.+... ....-..+. |.+. |..+++-
T Consensus 177 ~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~l------------fk~~~~qLk-W~~~---g~~ll~l 240 (561)
T COG5354 177 LDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNL------------FKVSGVQLK-WQVL---GKYLLVL 240 (561)
T ss_pred eeEEecCCCCCceEEEEccccCCCCcEEEEEEccCCCeeeeeee------------EeecccEEE-EecC---CceEEEE
Confidence 126777775433211 133467899999886665544321 011223344 6665 4422221
Q ss_pred e----------ecCCcEEEEEccCCCCceEeeecCCcceEEEEEeCCCCeEEEec--CCCcEEEEecCCC
Q 021291 227 G----------YEDGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGG--ADQKIVLYNLDHS 284 (314)
Q Consensus 227 g----------~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s--~dg~i~iw~~~~~ 284 (314)
. .....+++++++. .-+.....-.++|...+|.|.+..+++.+ .+-.+.++|++..
T Consensus 241 ~~t~~ksnKsyfgesnLyl~~~~e--~~i~V~~~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~N 308 (561)
T COG5354 241 VMTHTKSNKSYFGESNLYLLRITE--RSIPVEKDLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGN 308 (561)
T ss_pred EEEeeecccceeccceEEEEeecc--cccceeccccccceeeeecccCCceeEEecccccceeecccccc
Confidence 1 1134688888884 22322325678999999998887765544 6778888888765
No 285
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=98.92 E-value=4.9e-06 Score=78.10 Aligned_cols=230 Identities=10% Similarity=-0.005 Sum_probs=129.6
Q ss_pred eEEEEcc-CCCEEEEecCCCeEEEEeCCCCeEEEEEeccCC------------cccEEEEEEcccCCCCeEEEee-cCCe
Q 021291 22 TDVCFHQ-TKPILFAGTTGGELRIWDTVQHRTVSSSWVHSA------------AHGIVSVATGPSIGLNKVISQG-RDGT 87 (314)
Q Consensus 22 ~~~~~~~-~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~------------~~~v~~~~~~~~~~~~~l~s~~-~dg~ 87 (314)
..+++++ +++++++-+.++.|++||.. ++.+..+..... -.....|++.+ +++.|+.+. ..+.
T Consensus 571 ~gvavd~~~g~lyVaDs~n~rI~v~d~~-G~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~--~gn~LYVaDt~n~~ 647 (1057)
T PLN02919 571 GKLAIDLLNNRLFISDSNHNRIVVTDLD-GNFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNA--KKNLLYVADTENHA 647 (1057)
T ss_pred ceEEEECCCCeEEEEECCCCeEEEEeCC-CCEEEEEccCCCcCCCCCchhccccCCCcEEEEeC--CCCEEEEEeCCCce
Confidence 4678887 46677777888999999975 454444432100 01257889988 777666554 4568
Q ss_pred EEEEeCCCCCCCCCCeeeeecceeeEEEeeeeeccccccccCCCCcceeeccCCceeeecCCCCCCceeccCCCceEEEe
Q 021291 88 VKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVA 167 (314)
Q Consensus 88 v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (314)
|+++|..++.. .++....... .. ..++.... ...+....+++++|++..+++ +
T Consensus 648 Ir~id~~~~~V-----~tlag~G~~g--~~----------~~gg~~~~---------~~~ln~P~gVa~dp~~g~LyV-a 700 (1057)
T PLN02919 648 LREIDFVNETV-----RTLAGNGTKG--SD----------YQGGKKGT---------SQVLNSPWDVCFEPVNEKVYI-A 700 (1057)
T ss_pred EEEEecCCCEE-----EEEeccCccc--CC----------CCCChhhh---------HhhcCCCeEEEEecCCCeEEE-E
Confidence 99999877542 1111110000 00 00000000 000000111778886666665 4
Q ss_pred ecCcCeEEEEecCCCceeeeecccc-cCCCCCcCC--CCCceeeeEEEecCCCCCCceEEEEeecCCcEEEEEccCCCCc
Q 021291 168 GEQLSEVEIWDLNTAERCTRLHQNS-CGGSPNFSS--KGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIP 244 (314)
Q Consensus 168 g~~d~~i~vwd~~~~~~~~~~~~~~-~~~~~~h~~--~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~ 244 (314)
...++.|++||..++... .+.... .....++.. ..-.....++ ++|+ |..++++...++.|++||+.+ +..
T Consensus 701 d~~~~~I~v~d~~~g~v~-~~~G~G~~~~~~g~~~~~~~~~~P~GIa-vspd---G~~LYVADs~n~~Irv~D~~t-g~~ 774 (1057)
T PLN02919 701 MAGQHQIWEYNISDGVTR-VFSGDGYERNLNGSSGTSTSFAQPSGIS-LSPD---LKELYIADSESSSIRALDLKT-GGS 774 (1057)
T ss_pred ECCCCeEEEEECCCCeEE-EEecCCccccCCCCccccccccCccEEE-EeCC---CCEEEEEECCCCeEEEEECCC-CcE
Confidence 555789999999876543 222100 000001100 0112345566 9987 443666777789999999986 321
Q ss_pred eEee-------------ecC--------CcceEEEEEeCCCCeEEEecCCCcEEEEecCCCeee
Q 021291 245 LTAM-------------KVH--------LEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTYV 287 (314)
Q Consensus 245 ~~~~-------------~~h--------~~~v~~~~~~~~~~~l~s~s~dg~i~iw~~~~~~~~ 287 (314)
.... ... -.....++++++|..+++-+.++.|++||.+++...
T Consensus 775 ~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~LYVADs~N~rIrviD~~tg~v~ 838 (1057)
T PLN02919 775 RLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQIYVADSYNHKIKKLDPATKRVT 838 (1057)
T ss_pred EEEEecccccCcccccccCCCCchhhhhccCCceeeEeCCCcEEEEECCCCEEEEEECCCCeEE
Confidence 1100 000 112368899999998899999999999999877544
No 286
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=98.91 E-value=5.1e-08 Score=77.22 Aligned_cols=157 Identities=11% Similarity=0.158 Sum_probs=97.3
Q ss_pred eeEEEEccCCCEEEEecCCCeEEEEeCCCCe----EEEEEeccCCcccEEEEEEcccCCCCeEE---EeecCCeEEEEeC
Q 021291 21 VTDVCFHQTKPILFAGTTGGELRIWDTVQHR----TVSSSWVHSAAHGIVSVATGPSIGLNKVI---SQGRDGTVKCWDI 93 (314)
Q Consensus 21 v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~----~~~~~~~~~~~~~v~~~~~~~~~~~~~l~---s~~~dg~v~iwd~ 93 (314)
+..+.+++++++||.+..+....+++..... ++........+ ..+.|.. +..... .+++...+.+|..
T Consensus 65 ~~~~~~s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~v~~~~---~ai~~~~--~~~sv~v~dkagD~~~~di~s~ 139 (390)
T KOG3914|consen 65 PALVLTSDSGRLVAVATSSKQRAVFDYRENPKGAKLLDVSCVPKRP---TAISFIR--EDTSVLVADKAGDVYSFDILSA 139 (390)
T ss_pred ccccccCCCceEEEEEeCCCceEEEEEecCCCcceeeeEeecccCc---ceeeeee--ccceEEEEeecCCceeeeeecc
Confidence 3445677889999999888887777765432 33333333322 3333433 223333 3344455555555
Q ss_pred CCCCCCCCCeeeeecceeeEEEeeeeeccccccccCCCCcceeeccCCceeeecCCCCCC----ceeccCCCceEEEeec
Q 021291 94 ENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSK----DDVPAEGPKYMAVAGE 169 (314)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~g~ 169 (314)
..+.+.. ..+|-. ++|+||++.++ ++.
T Consensus 140 ~~~~~~~-----------------------------------------------~lGhvSml~dVavS~D~~~Ii--taD 170 (390)
T KOG3914|consen 140 DSGRCEP-----------------------------------------------ILGHVSMLLDVAVSPDDQFII--TAD 170 (390)
T ss_pred cccCcch-----------------------------------------------hhhhhhhhheeeecCCCCEEE--Eec
Confidence 5433211 111111 67999997655 788
Q ss_pred CcCeEEEEecCCCceeeeecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEeecCCcEEEEEccCCCCceEeee
Q 021291 170 QLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMK 249 (314)
Q Consensus 170 ~d~~i~vwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~~~~~ 249 (314)
.|..|++-.......+..|.. ||.. .+..+. .-++ + .|++|+.|++|++||+++ ++.+.++.
T Consensus 171 RDEkIRvs~ypa~f~Iesfcl-------GH~e----FVS~is-l~~~----~-~LlS~sGD~tlr~Wd~~s-gk~L~t~d 232 (390)
T KOG3914|consen 171 RDEKIRVSRYPATFVIESFCL-------GHKE----FVSTIS-LTDN----Y-LLLSGSGDKTLRLWDITS-GKLLDTCD 232 (390)
T ss_pred CCceEEEEecCcccchhhhcc-------ccHh----heeeee-eccC----c-eeeecCCCCcEEEEeccc-CCcccccc
Confidence 899999988776666666665 7744 565555 5543 3 689999999999999998 66655543
No 287
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=98.87 E-value=9.2e-07 Score=73.31 Aligned_cols=267 Identities=12% Similarity=0.119 Sum_probs=138.4
Q ss_pred eEEEEccCCCEEEEecCCCeEEEEeCCCCeEEEEEeccCCcccEEEEEEcccCCCCeEEEeec-----------CCeEEE
Q 021291 22 TDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGR-----------DGTVKC 90 (314)
Q Consensus 22 ~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~-----------dg~v~i 90 (314)
+-+.|||.|.||+|--.-| |.+|--++-..++.+. |. .|.-+.||| ..++|+|=+. ...++|
T Consensus 214 tyv~wSP~GTYL~t~Hk~G-I~lWGG~~f~r~~RF~-Hp---~Vq~idfSP--~EkYLVT~s~~p~~~~~~d~e~~~l~I 286 (698)
T KOG2314|consen 214 TYVRWSPKGTYLVTFHKQG-IALWGGESFDRIQRFY-HP---GVQFIDFSP--NEKYLVTYSPEPIIVEEDDNEGQQLII 286 (698)
T ss_pred eeEEecCCceEEEEEeccc-eeeecCccHHHHHhcc-CC---CceeeecCC--ccceEEEecCCccccCcccCCCceEEE
Confidence 4589999999999998887 8899866655555553 42 389999999 8899998653 257999
Q ss_pred EeCCCCCCCCCCeeeee-cce--eeEEEeeeeeccccccccCCCCcceeeccCCceeee---cCCCCCCceeccCCCceE
Q 021291 91 WDIENGGLSSNPSLTIK-TNS--YHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDT---DSLCDSKDDVPAEGPKYM 164 (314)
Q Consensus 91 wd~~~~~~~~~~~~~~~-~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~ 164 (314)
||+.+|.+.+ .+... ... -....++......+.... ....++.......+.. ...+-.+.+|+|.++.+.
T Consensus 287 WDI~tG~lkr--sF~~~~~~~~~WP~frWS~DdKy~Arm~~--~sisIyEtpsf~lld~Kslki~gIr~FswsP~~~llA 362 (698)
T KOG2314|consen 287 WDIATGLLKR--SFPVIKSPYLKWPIFRWSHDDKYFARMTG--NSISIYETPSFMLLDKKSLKISGIRDFSWSPTSNLLA 362 (698)
T ss_pred EEccccchhc--ceeccCCCccccceEEeccCCceeEEecc--ceEEEEecCceeeecccccCCccccCcccCCCcceEE
Confidence 9999998755 22221 111 111222222222222111 2222222222111111 112222266666653221
Q ss_pred EEeecCc---CeEEEEecCC----------------------Cceeeeeccc-ccC-----------------CCCCcCC
Q 021291 165 AVAGEQL---SEVEIWDLNT----------------------AERCTRLHQN-SCG-----------------GSPNFSS 201 (314)
Q Consensus 165 ~~~g~~d---~~i~vwd~~~----------------------~~~~~~~~~~-~~~-----------------~~~~h~~ 201 (314)
.-+-..+ ..+.+-.+.+ |..++..... ... ...-..-
T Consensus 363 Ywtpe~~~~parvtL~evPs~~~iRt~nlfnVsDckLhWQk~gdyLcvkvdR~tK~~~~g~f~n~eIfrireKdIpve~v 442 (698)
T KOG2314|consen 363 YWTPETNNIPARVTLMEVPSKREIRTKNLFNVSDCKLHWQKSGDYLCVKVDRHTKSKVKGQFSNLEIFRIREKDIPVEVV 442 (698)
T ss_pred EEcccccCCcceEEEEecCccceeeeccceeeeccEEEeccCCcEEEEEEEeeccccccceEeeEEEEEeeccCCCceee
Confidence 1110000 0111111111 1111100000 000 0000011
Q ss_pred CCCceeeeEEEecCCCCCCceEEEEeec-CCcEEEEEccC-CCC--ceEeeecCCcceEEEEEeCCCCeEEEe---cCCC
Q 021291 202 KGRGMCMAVQAYLPSKSQGFVNVLAGYE-DGSILVWDIRN-PGI--PLTAMKVHLEPVLCLSIDESCNGGISG---GADQ 274 (314)
Q Consensus 202 ~~~~~~~~~~~~~p~~~~g~~~l~~g~~-dg~i~vwd~~~-~~~--~~~~~~~h~~~v~~~~~~~~~~~l~s~---s~dg 274 (314)
+....+...+ |.|.+ +++.+++|.. ..++.+|.+.+ ... .+..+.. ...+.+.|+|.|++++.+ |..|
T Consensus 443 elke~vi~Fa-WEP~g--dkF~vi~g~~~k~tvsfY~~e~~~~~~~lVk~~dk--~~~N~vfwsPkG~fvvva~l~s~~g 517 (698)
T KOG2314|consen 443 ELKESVIAFA-WEPHG--DKFAVISGNTVKNTVSFYAVETNIKKPSLVKELDK--KFANTVFWSPKGRFVVVAALVSRRG 517 (698)
T ss_pred ecchheeeee-eccCC--CeEEEEEccccccceeEEEeecCCCchhhhhhhcc--cccceEEEcCCCcEEEEEEeccccc
Confidence 2234566666 88873 2334444433 35688888873 222 3334432 556889999999998665 4578
Q ss_pred cEEEEecCCCeeeE-------eeeeeeecCCCceece
Q 021291 275 KIVLYNLDHSTYVL-------FGIGFVCDQEGNKFGT 304 (314)
Q Consensus 275 ~i~iw~~~~~~~~~-------~~~~~~~~~~~~~~~~ 304 (314)
.+.++|++...... .......+|.|+++.+
T Consensus 518 ~l~F~D~~~a~~k~~~~~eh~~at~veWDPtGRYvvT 554 (698)
T KOG2314|consen 518 DLEFYDTDYADLKDTASPEHFAATEVEWDPTGRYVVT 554 (698)
T ss_pred ceEEEecchhhhhhccCccccccccceECCCCCEEEE
Confidence 89999998532222 2344567899988765
No 288
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=98.85 E-value=9e-06 Score=62.23 Aligned_cols=72 Identities=11% Similarity=0.159 Sum_probs=51.4
Q ss_pred EEEEccCCCEEEEecCCCeEEEEeCCCC--eEEEEEeccCCccc-EEEEEEcccCCCCeEEEeecCCeEEEEeCCCCC
Q 021291 23 DVCFHQTKPILFAGTTGGELRIWDTVQH--RTVSSSWVHSAAHG-IVSVATGPSIGLNKVISQGRDGTVKCWDIENGG 97 (314)
Q Consensus 23 ~~~~~~~~~~l~s~~~dg~v~iwd~~~~--~~~~~~~~~~~~~~-v~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~ 97 (314)
.++.+.+|++||. -.|..|.|-..++. ..+.+.+.++.+.+ =..++|+| |+..||.+...|+|+++|+....
T Consensus 2 ~~~~~~~Gk~lAi-~qd~~iEiRsa~Ddf~si~~kcqVpkD~~PQWRkl~WSp--D~tlLa~a~S~G~i~vfdl~g~~ 76 (282)
T PF15492_consen 2 HLALSSDGKLLAI-LQDQCIEIRSAKDDFSSIIGKCQVPKDPNPQWRKLAWSP--DCTLLAYAESTGTIRVFDLMGSE 76 (282)
T ss_pred ceeecCCCcEEEE-EeccEEEEEeccCCchheeEEEecCCCCCchheEEEECC--CCcEEEEEcCCCeEEEEecccce
Confidence 3567788987775 46677888776543 23333343433222 46799999 99999999999999999998654
No 289
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=98.84 E-value=2.8e-07 Score=79.21 Aligned_cols=212 Identities=10% Similarity=0.110 Sum_probs=130.7
Q ss_pred CCceEEecCCCCceeEEEEccCC------------CEEEEecCCCeEEEEeCCCCeEEEEEeccCCcccEEEEEEcccCC
Q 021291 8 PDPVAVLRGHRASVTDVCFHQTK------------PILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIG 75 (314)
Q Consensus 8 ~~~~~~l~~h~~~v~~~~~~~~~------------~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 75 (314)
.+.++++..|...|+.+.|.|-. -+||++...|.|.+||...+..+..++.+. ++|..++|-+..+
T Consensus 45 ~q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~d~~~~s~~~~l~~~~--~~~qdl~W~~~rd 122 (1062)
T KOG1912|consen 45 LQLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILVDFVLASVINWLSHSN--DSVQDLCWVPARD 122 (1062)
T ss_pred hhhhhccccCccceeEEEeccCCCchhccCccccceeEEeccccCcEEEEEehhhhhhhhhcCCC--cchhheeeeeccC
Confidence 36788889999999999998731 157888889999999999988888888777 5599999987533
Q ss_pred -C-CeEEEeecCCeEEEEeCCCCCCCCCCeeeeecceeeEEEeeeeeccccccccCCC---------------Ccceeec
Q 021291 76 -L-NKVISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANE---------------PKDCYER 138 (314)
Q Consensus 76 -~-~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~ 138 (314)
. ..|+.-....+|.+|+..+|+..++ +...........+.+...........++ ......+
T Consensus 123 ~Srd~LlaIh~ss~lvLwntdtG~k~Wk--~~ys~~iLs~f~~DPfd~rh~~~l~s~g~vl~~~~l~~sep~~pgk~~qI 200 (1062)
T KOG1912|consen 123 DSRDVLLAIHGSSTLVLWNTDTGEKFWK--YDYSHEILSCFRVDPFDSRHFCVLGSKGFVLSCKDLGLSEPDVPGKEFQI 200 (1062)
T ss_pred cchheeEEecCCcEEEEEEccCCceeec--cccCCcceeeeeeCCCCcceEEEEccCceEEEEeccCCCCCCCCceeEEE
Confidence 2 4566667778999999999987652 1111111111111111111111111111 1111111
Q ss_pred cCC--c-----------eeeecCCCCCC-------ceeccCCCceEEEeecCcCeEEEEecCCCceeeeecccccCCCCC
Q 021291 139 EVG--E-----------TVDTDSLCDSK-------DDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPN 198 (314)
Q Consensus 139 ~~~--~-----------~~~~~~~~~~~-------~~~~~~~~~~~~~~g~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~ 198 (314)
... . ......+.... ++|+|.-+++++++- ...+.++|++-..++.....+
T Consensus 201 ~sd~Sdl~~lere~at~ns~ts~~~sa~fity~a~faf~p~~rn~lfi~~--prellv~dle~~~~l~vvpie------- 271 (1062)
T KOG1912|consen 201 TSDHSDLAHLERETATGNSTTSTPASAYFITYCAQFAFSPHWRNILFITF--PRELLVFDLEYECCLAVVPIE------- 271 (1062)
T ss_pred ecCccchhhhhhhhhccccccCCCcchhHHHHHHhhhcChhhhceEEEEe--ccceEEEcchhhceeEEEEec-------
Confidence 111 0 00000000000 677888888776543 478999999988888777642
Q ss_pred cCCCCCceeeeEEEecCCCCCCceEEEEeecCCcEEEEEccC
Q 021291 199 FSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRN 240 (314)
Q Consensus 199 h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~ 240 (314)
++.+--+. +-|+.. .. .+++...||.+.+|-.+.
T Consensus 272 -----r~~akfv~-vlP~~~-rd-~LfclH~nG~ltirvrk~ 305 (1062)
T KOG1912|consen 272 -----RGGAKFVD-VLPDPR-RD-ALFCLHSNGRLTIRVRKE 305 (1062)
T ss_pred -----cCCcceeE-eccCCC-cc-eEEEEecCCeEEEEEeec
Confidence 22333344 778744 33 899999999999997664
No 290
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=98.83 E-value=2.3e-07 Score=81.06 Aligned_cols=184 Identities=14% Similarity=0.144 Sum_probs=127.0
Q ss_pred CCCEEEEecCCCeEEEEeCCCCeEEEEEeccCCcccEEEEEEcccCCCCeEEEeecCCeEEEEeCCCCCCCCCCeeeeec
Q 021291 29 TKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGGLSSNPSLTIKT 108 (314)
Q Consensus 29 ~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~ 108 (314)
++..++-|+....+..+|+.+.+..+...... ..|.-|..+ ++.+.+|...|+|.+-|.++.+.+. ++..
T Consensus 146 ~~~~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~a--~~v~imR~N----nr~lf~G~t~G~V~LrD~~s~~~ih----t~~a 215 (1118)
T KOG1275|consen 146 GPSTLIMGGLQEKLIHIDLNTEKETRTTNVSA--SGVTIMRYN----NRNLFCGDTRGTVFLRDPNSFETIH----TFDA 215 (1118)
T ss_pred CCcceeecchhhheeeeecccceeeeeeeccC--CceEEEEec----CcEEEeecccceEEeecCCcCceee----eeec
Confidence 34457777777778889998887776665444 237777764 4899999999999999999886544 4444
Q ss_pred ceeeEEEeeeeeccccccccCCCCcceeeccCCceeeecCCCCCCceeccCCCceEEEeec--------CcCeEEEEecC
Q 021291 109 NSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGE--------QLSEVEIWDLN 180 (314)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~--------~d~~i~vwd~~ 180 (314)
+...... |+-.|+ +++++|- .|.-|+|||+|
T Consensus 216 Hs~siSD----------------------------------------fDv~GN-lLitCG~S~R~~~l~~D~FvkVYDLR 254 (1118)
T KOG1275|consen 216 HSGSISD----------------------------------------FDVQGN-LLITCGYSMRRYNLAMDPFVKVYDLR 254 (1118)
T ss_pred cccceee----------------------------------------eeccCC-eEEEeecccccccccccchhhhhhhh
Confidence 4443332 444444 3333432 26779999999
Q ss_pred CCceeeeecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEeecCCcEEEEEccCCCCc---eEeeecCCcceEE
Q 021291 181 TAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIP---LTAMKVHLEPVLC 257 (314)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~---~~~~~~h~~~v~~ 257 (314)
+.+.+.-+.. +.. + .-+ .|.|.-+. .+++.+..|...+-|..+...+ +..+......+..
T Consensus 255 mmral~PI~~--------~~~----P-~fl-rf~Psl~t---~~~V~S~sGq~q~vd~~~lsNP~~~~~~v~p~~s~i~~ 317 (1118)
T KOG1275|consen 255 MMRALSPIQF--------PYG----P-QFL-RFHPSLTT---RLAVTSQSGQFQFVDTATLSNPPAGVKMVNPNGSGISA 317 (1118)
T ss_pred hhhccCCccc--------ccC----c-hhh-hhcccccc---eEEEEecccceeeccccccCCCccceeEEccCCCccee
Confidence 9887665552 211 1 112 38887442 6888889999999994432333 3334444556999
Q ss_pred EEEeCCCCeEEEecCCCcEEEEe
Q 021291 258 LSIDESCNGGISGGADQKIVLYN 280 (314)
Q Consensus 258 ~~~~~~~~~l~s~s~dg~i~iw~ 280 (314)
+++++++..++.|..+|.|.+|.
T Consensus 318 fDiSsn~~alafgd~~g~v~~wa 340 (1118)
T KOG1275|consen 318 FDISSNGDALAFGDHEGHVNLWA 340 (1118)
T ss_pred EEecCCCceEEEecccCcEeeec
Confidence 99999999999999999999997
No 291
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=98.82 E-value=1.1e-05 Score=66.06 Aligned_cols=256 Identities=15% Similarity=0.126 Sum_probs=144.3
Q ss_pred CCCCceeEEEEccCCCEEEEecCCC-eEEEEeCCCCeEEEEEeccCCcccEEEEEEcccCCCCeEEEeecCCeEEEEeCC
Q 021291 16 GHRASVTDVCFHQTKPILFAGTTGG-ELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIE 94 (314)
Q Consensus 16 ~h~~~v~~~~~~~~~~~l~s~~~dg-~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd~~ 94 (314)
+|.+.|.-..+.-+++-++.|..|| .+-|+|.++++... +...- +.|.++..++ +|++++.+.....|.+.|+.
T Consensus 357 ~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~kr-~e~~l--g~I~av~vs~--dGK~~vvaNdr~el~vidid 431 (668)
T COG4946 357 GKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEVKR-IEKDL--GNIEAVKVSP--DGKKVVVANDRFELWVIDID 431 (668)
T ss_pred CCCCceEEEEEccCCcceEEeccCCceEEEEecCCceEEE-eeCCc--cceEEEEEcC--CCcEEEEEcCceEEEEEEec
Confidence 5778888888888888899999999 89999988776544 44444 4499999999 99999999998999999999
Q ss_pred CCCCCCCCeeeeecce--eeEEEeeeeecccccc---ccCCCCcceeeccCCceeeecCCCCCC--ceeccCCCceEEEe
Q 021291 95 NGGLSSNPSLTIKTNS--YHFCKLSLVKEPYANA---KQANEPKDCYEREVGETVDTDSLCDSK--DDVPAEGPKYMAVA 167 (314)
Q Consensus 95 ~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~ 167 (314)
++.... .-+... .....+++.....+.. ........++++..++......+...+ -+|.|+++++...+
T Consensus 432 ngnv~~----idkS~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~~Kiy~vTT~ta~DfsPaFD~d~ryLYfLs 507 (668)
T COG4946 432 NGNVRL----IDKSEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGGKIYDVTTPTAYDFSPAFDPDGRYLYFLS 507 (668)
T ss_pred CCCeeE----ecccccceeEEEEEcCCceeEEEecCcceeeeeEEEEecCCCeEEEecCCcccccCcccCCCCcEEEEEe
Confidence 986421 111111 1111222222222222 222344556666666655444433333 88999999886654
Q ss_pred e-----cCcCeEEEEecCCCc--eeeeecccccCCC-----CCcCC----CCCceeeeEEEecCCCCCCceEEEEeecCC
Q 021291 168 G-----EQLSEVEIWDLNTAE--RCTRLHQNSCGGS-----PNFSS----KGRGMCMAVQAYLPSKSQGFVNVLAGYEDG 231 (314)
Q Consensus 168 g-----~~d~~i~vwd~~~~~--~~~~~~~~~~~~~-----~~h~~----~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg 231 (314)
. +.|..+.-+....-. -+..+....-.+. ...+. ...+.-..+..|.-+ . +....+++-.+|
T Consensus 508 ~RsLdPs~Drv~fnf~f~~vskPylv~L~~g~~sP~~q~p~~~~~ea~e~dle~ie~r~eP~pVe-e-~dY~sI~~lk~~ 585 (668)
T COG4946 508 ARSLDPSNDRVIFNFSFQRVSKPYLVVLGRGYYSPFNQPPDEANSEAGEVDLEGIEDRVEPFPVE-E-GDYRSIAGLKNG 585 (668)
T ss_pred ccccCCCCCeeEEEEEEeeeccceEEEecCCCCChhhcCchhcCccccceehhhhcccccccccC-c-cceeEeeecCCC
Confidence 3 223333333222111 1111110000000 00000 001111111112212 1 333566777777
Q ss_pred cEEEEEccCCCCceE------------e--ee-----cCCcceEEEEEeCCCCeEEEecCCCcEEEEecCC
Q 021291 232 SILVWDIRNPGIPLT------------A--MK-----VHLEPVLCLSIDESCNGGISGGADQKIVLYNLDH 283 (314)
Q Consensus 232 ~i~vwd~~~~~~~~~------------~--~~-----~h~~~v~~~~~~~~~~~l~s~s~dg~i~iw~~~~ 283 (314)
.|.++...-.+...+ . ++ .-...+.++..++|+..++. -.||.+++++++.
T Consensus 586 killfs~pi~Gefs~yy~gq~~kG~l~~ydletkk~~e~k~nvss~rlS~D~s~ilv-k~d~kl~~f~vek 655 (668)
T COG4946 586 KILLFSYPIHGEFSQYYWGQPEKGRLEKYDLETKKVEEYKDNVSSFRLSSDGSKILV-KLDGKLRLFDVEK 655 (668)
T ss_pred eEEEEEeeccchhhhhhcCCCccceEEEEecchhhHHHHhcccceEEEcCCCCEEEE-EeCCeEEEEeccc
Confidence 777776542222111 1 11 12357888999999999887 7899999999986
No 292
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=98.81 E-value=1.4e-08 Score=78.88 Aligned_cols=116 Identities=18% Similarity=0.177 Sum_probs=82.4
Q ss_pred ceeccCCCceEEEeecCcCeEEEEecCCC-----ceeeeecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEee
Q 021291 154 DDVPAEGPKYMAVAGEQLSEVEIWDLNTA-----ERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGY 228 (314)
Q Consensus 154 ~~~~~~~~~~~~~~g~~d~~i~vwd~~~~-----~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~ 228 (314)
..|.-.++ ++..|..+|.|..+|++.+ .+...+- | .+.+++++ .-.. +++ +|++.+
T Consensus 258 lQf~~s~n--Lv~~GcRngeI~~iDLR~rnqG~~~~a~rly---------h----~Ssvtslq-~Lq~--s~q-~LmaS~ 318 (425)
T KOG2695|consen 258 LQFAGSDN--LVFNGCRNGEIFVIDLRCRNQGNGWCAQRLY---------H----DSSVTSLQ-ILQF--SQQ-KLMASD 318 (425)
T ss_pred HHhcccCC--eeEecccCCcEEEEEeeecccCCCcceEEEE---------c----Ccchhhhh-hhcc--ccc-eEeecc
Confidence 34444443 3447888999999999975 2333333 2 34555555 2221 133 899999
Q ss_pred cCCcEEEEEccCCCCc---eEeeecCCcceEEEEE--eCCCCeEEEecCCCcEEEEecCCCeeeEe
Q 021291 229 EDGSILVWDIRNPGIP---LTAMKVHLEPVLCLSI--DESCNGGISGGADQKIVLYNLDHSTYVLF 289 (314)
Q Consensus 229 ~dg~i~vwd~~~~~~~---~~~~~~h~~~v~~~~~--~~~~~~l~s~s~dg~i~iw~~~~~~~~~~ 289 (314)
.+|+|++||.+. -++ +.++.||...-.-+-+ ++....++++++|...|||.++.+..+-.
T Consensus 319 M~gkikLyD~R~-~K~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~GdDcytRiWsl~~ghLl~t 383 (425)
T KOG2695|consen 319 MTGKIKLYDLRA-TKCKKSVMQYEGHVNLSAYLPAHVKEEEGSIFSVGDDCYTRIWSLDSGHLLCT 383 (425)
T ss_pred CcCceeEeeehh-hhcccceeeeecccccccccccccccccceEEEccCeeEEEEEecccCceeec
Confidence 999999999996 555 8888899765444444 66677899999999999999999987764
No 293
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=98.80 E-value=1.3e-05 Score=67.45 Aligned_cols=234 Identities=15% Similarity=0.065 Sum_probs=127.4
Q ss_pred CCCEEEEecCCCeEEEEeCCCCeEEEEEeccCCcccEEEEEEcccCCCCeEEEeecCCeEEEEeCCCCCCCCCCeeeeec
Q 021291 29 TKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGGLSSNPSLTIKT 108 (314)
Q Consensus 29 ~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~ 108 (314)
.+..+++++.+|.|..+|..+|+.+......... ...... ++..++.++.++.|..+|.++++..++ ...
T Consensus 64 ~~~~v~v~~~~g~v~a~d~~tG~~~W~~~~~~~~--~~~p~v----~~~~v~v~~~~g~l~ald~~tG~~~W~----~~~ 133 (377)
T TIGR03300 64 AGGKVYAADADGTVVALDAETGKRLWRVDLDERL--SGGVGA----DGGLVFVGTEKGEVIALDAEDGKELWR----AKL 133 (377)
T ss_pred ECCEEEEECCCCeEEEEEccCCcEeeeecCCCCc--ccceEE----cCCEEEEEcCCCEEEEEECCCCcEeee----ecc
Confidence 4668888999999999999999998876654321 112222 457888888999999999999987552 111
Q ss_pred ceeeEEEeeeeeccccccccCCCCcceeeccCCceeee-cCCCC-------CCceeccCCCceEEEeecCcCeEEEEecC
Q 021291 109 NSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDT-DSLCD-------SKDDVPAEGPKYMAVAGEQLSEVEIWDLN 180 (314)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-------~~~~~~~~~~~~~~~~g~~d~~i~vwd~~ 180 (314)
.......... ...........+....++...++..-. ..... ..... .+ ..++ .+..++.+..+|++
T Consensus 134 ~~~~~~~p~v-~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~~~~~sp~~-~~-~~v~--~~~~~g~v~ald~~ 208 (377)
T TIGR03300 134 SSEVLSPPLV-ANGLVVVRTNDGRLTALDAATGERLWTYSRVTPALTLRGSASPVI-AD-GGVL--VGFAGGKLVALDLQ 208 (377)
T ss_pred CceeecCCEE-ECCEEEEECCCCeEEEEEcCCCceeeEEccCCCceeecCCCCCEE-EC-CEEE--EECCCCEEEEEEcc
Confidence 1110000000 011111112223344445444433221 11110 00111 12 2333 45557999999999
Q ss_pred CCceeeeecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEeecCCcEEEEEccCCCCceEeeecCCcceEEEEE
Q 021291 181 TAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPVLCLSI 260 (314)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~~~~ 260 (314)
+++.+........ .+... .. ....+. -+|--. +. .+++++.+|.++.||..+ ++.+..... . .......
T Consensus 209 tG~~~W~~~~~~~---~g~~~-~~-~~~~~~-~~p~~~-~~-~vy~~~~~g~l~a~d~~t-G~~~W~~~~-~-~~~~p~~ 277 (377)
T TIGR03300 209 TGQPLWEQRVALP---KGRTE-LE-RLVDVD-GDPVVD-GG-QVYAVSYQGRVAALDLRS-GRVLWKRDA-S-SYQGPAV 277 (377)
T ss_pred CCCEeeeeccccC---CCCCc-hh-hhhccC-CccEEE-CC-EEEEEEcCCEEEEEECCC-CcEEEeecc-C-CccCceE
Confidence 9987654431000 00000 00 000000 011100 22 677788899999999987 766655441 1 1122223
Q ss_pred eCCCCeEEEecCCCcEEEEecCCCeeeEee
Q 021291 261 DESCNGGISGGADQKIVLYNLDHSTYVLFG 290 (314)
Q Consensus 261 ~~~~~~l~s~s~dg~i~iw~~~~~~~~~~~ 290 (314)
.+..++.++.||.+..+|..+++.++..
T Consensus 278 --~~~~vyv~~~~G~l~~~d~~tG~~~W~~ 305 (377)
T TIGR03300 278 --DDNRLYVTDADGVVVALDRRSGSELWKN 305 (377)
T ss_pred --eCCEEEEECCCCeEEEEECCCCcEEEcc
Confidence 3346777889999999999999877653
No 294
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=98.80 E-value=1.6e-07 Score=72.21 Aligned_cols=220 Identities=13% Similarity=0.235 Sum_probs=128.2
Q ss_pred CceeEEEEccCC--CEEEEecCCCeEEEEeCCCCeE-------------------------------------E----EE
Q 021291 19 ASVTDVCFHQTK--PILFAGTTGGELRIWDTVQHRT-------------------------------------V----SS 55 (314)
Q Consensus 19 ~~v~~~~~~~~~--~~l~s~~~dg~v~iwd~~~~~~-------------------------------------~----~~ 55 (314)
..|..+.|..++ ..++..+.|.+|++|.+..... + ..
T Consensus 86 EKin~I~w~~~t~r~hFLlstNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~r 165 (460)
T COG5170 86 EKINAIEWFDDTGRNHFLLSTNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCR 165 (460)
T ss_pred HHhhheeeecCCCcceEEEecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccce
Confidence 357888888743 4566778999999998754210 0 00
Q ss_pred EeccCCcccEEEEEEcccCCCCeEEEeecCCeEEEEeCCCCCCCCCCeeeeecceeeEEEeeeeeccccccccCCCCcce
Q 021291 56 SWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDC 135 (314)
Q Consensus 56 ~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 135 (314)
+....++-.|.++.|+. |...++++ .|-.|.+|+++-... .+.+ ..+.+..........
T Consensus 166 vyaNaH~yhiNSiS~Ns--D~et~lSa-DdLrINLWnl~i~D~----sFnI-------VDiKP~nmeeLteVI------- 224 (460)
T COG5170 166 VYANAHPYHINSISFNS--DKETLLSA-DDLRINLWNLEIIDG----SFNI-------VDIKPHNMEELTEVI------- 224 (460)
T ss_pred eccccceeEeeeeeecC--chheeeec-cceeeeeccccccCC----ceEE-------EeccCccHHHHHHHH-------
Confidence 11122224578888888 76666665 467899998864321 1111 000000000000000
Q ss_pred eeccCCceeeecCCCCCCceeccCCCceEEEeecCcCeEEEEecCCCcee----eeecccccCCCCCcCCCCCceeeeEE
Q 021291 136 YEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQLSEVEIWDLNTAERC----TRLHQNSCGGSPNFSSKGRGMCMAVQ 211 (314)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~vwd~~~~~~~----~~~~~~~~~~~~~h~~~~~~~~~~~~ 211 (314)
....|+|...+++..+.+ .|.|++-|+|..... ..+...........-.+....+..+.
T Consensus 225 ----------------tSaeFhp~~cn~fmYSsS-kG~Ikl~DlRq~alcdn~~klfe~~~D~v~~~ff~eivsSISD~k 287 (460)
T COG5170 225 ----------------TSAEFHPEMCNVFMYSSS-KGEIKLNDLRQSALCDNSKKLFELTIDGVDVDFFEEIVSSISDFK 287 (460)
T ss_pred ----------------hhcccCHhHcceEEEecC-CCcEEehhhhhhhhccCchhhhhhccCcccchhHHHHhhhhcceE
Confidence 004478877777766665 599999999843311 11110000000011122344667777
Q ss_pred EecCCCCCCceEEEEeecCCcEEEEEccCCCCceEeeecCC------------cceE---EEEEeCCCCeEEEecCCCcE
Q 021291 212 AYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHL------------EPVL---CLSIDESCNGGISGGADQKI 276 (314)
Q Consensus 212 ~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~h~------------~~v~---~~~~~~~~~~l~s~s~dg~i 276 (314)
|+|+ |+ ++++-.. -+|++||.+....|+.++.-|. +.|. .+.|+++...+++||..+..
T Consensus 288 -Fs~n---gr-yIlsRdy-ltvkiwDvnm~k~pikTi~~h~~l~~~l~d~YEnDaifdkFeisfSgd~~~v~sgsy~NNf 361 (460)
T COG5170 288 -FSDN---GR-YILSRDY-LTVKIWDVNMAKNPIKTIPMHCDLMDELNDVYENDAIFDKFEISFSGDDKHVLSGSYSNNF 361 (460)
T ss_pred -EcCC---Cc-EEEEecc-ceEEEEecccccCCceeechHHHHHHHHHhhhhccceeeeEEEEecCCcccccccccccce
Confidence 9998 66 6666544 5899999998788888886553 2333 46789999999999988887
Q ss_pred EEEecC
Q 021291 277 VLYNLD 282 (314)
Q Consensus 277 ~iw~~~ 282 (314)
-++-+.
T Consensus 362 giyp~~ 367 (460)
T COG5170 362 GIYPTD 367 (460)
T ss_pred eeeccc
Confidence 777643
No 295
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=98.80 E-value=3.3e-05 Score=60.74 Aligned_cols=201 Identities=13% Similarity=0.128 Sum_probs=120.0
Q ss_pred EEEEcc-CCCEEEEecCCCeEEEEeCCCCeEEEEEeccCCcccEEEEEEc-ccCCCCeEEEeecCCeEEEEeCCCCCCCC
Q 021291 23 DVCFHQ-TKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATG-PSIGLNKVISQGRDGTVKCWDIENGGLSS 100 (314)
Q Consensus 23 ~~~~~~-~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~~~l~s~~~dg~v~iwd~~~~~~~~ 100 (314)
+..|.+ ++.++++--..+.|..|+..+++... +.... ...+++. + + ..|+.+..+ .+.++|..+++...
T Consensus 4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~-~~~~~----~~G~~~~~~--~-g~l~v~~~~-~~~~~d~~~g~~~~ 74 (246)
T PF08450_consen 4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEV-IDLPG----PNGMAFDRP--D-GRLYVADSG-GIAVVDPDTGKVTV 74 (246)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTTTEEEE-EESSS----EEEEEEECT--T-SEEEEEETT-CEEEEETTTTEEEE
T ss_pred ceEEECCCCEEEEEEcCCCEEEEEECCCCeEEE-EecCC----CceEEEEcc--C-CEEEEEEcC-ceEEEecCCCcEEE
Confidence 578888 77788888889999999988765543 33322 5677777 5 5 556666654 45566988875422
Q ss_pred CCeeeeecceeeEEEeeeeeccccccccCCCCcceeeccCCceeeecCCCCCCceeccCCCceEEEeecCc-------Ce
Q 021291 101 NPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQL-------SE 173 (314)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d-------~~ 173 (314)
............... . +++.++|. +++...... |.
T Consensus 75 --~~~~~~~~~~~~~~N--D---------------------------------~~vd~~G~-ly~t~~~~~~~~~~~~g~ 116 (246)
T PF08450_consen 75 --LADLPDGGVPFNRPN--D---------------------------------VAVDPDGN-LYVTDSGGGGASGIDPGS 116 (246)
T ss_dssp --EEEEETTCSCTEEEE--E---------------------------------EEE-TTS--EEEEEECCBCTTCGGSEE
T ss_pred --EeeccCCCcccCCCc--e---------------------------------EEEcCCCC-EEEEecCCCccccccccc
Confidence 222211100000000 0 56788887 443222111 56
Q ss_pred EEEEecCCCceeeeecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEeecCCcEEEEEccCCCCce------Ee
Q 021291 174 VEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPL------TA 247 (314)
Q Consensus 174 i~vwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~------~~ 247 (314)
|..++.. ++....... -.....++ |+|+ ++.++++-+..+.|..+++...+..+ ..
T Consensus 117 v~~~~~~-~~~~~~~~~-------------~~~pNGi~-~s~d---g~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~ 178 (246)
T PF08450_consen 117 VYRIDPD-GKVTVVADG-------------LGFPNGIA-FSPD---GKTLYVADSFNGRIWRFDLDADGGELSNRRVFID 178 (246)
T ss_dssp EEEEETT-SEEEEEEEE-------------ESSEEEEE-EETT---SSEEEEEETTTTEEEEEEEETTTCCEEEEEEEEE
T ss_pred eEEECCC-CeEEEEecC-------------cccccceE-ECCc---chheeecccccceeEEEeccccccceeeeeeEEE
Confidence 7778877 443333321 22455666 9998 55355677888899999997533312 11
Q ss_pred eecCCcceEEEEEeCCCCeEEEecCCCcEEEEecCCCeeeEe
Q 021291 248 MKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTYVLF 289 (314)
Q Consensus 248 ~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~iw~~~~~~~~~~ 289 (314)
+..-....-.++++.+|++.++.-..+.|.+++.+ ++.+..
T Consensus 179 ~~~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~-G~~~~~ 219 (246)
T PF08450_consen 179 FPGGPGYPDGLAVDSDGNLWVADWGGGRIVVFDPD-GKLLRE 219 (246)
T ss_dssp -SSSSCEEEEEEEBTTS-EEEEEETTTEEEEEETT-SCEEEE
T ss_pred cCCCCcCCCcceEcCCCCEEEEEcCCCEEEEECCC-ccEEEE
Confidence 22222247789999999988877778899999988 665543
No 296
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.76 E-value=4.2e-08 Score=81.12 Aligned_cols=176 Identities=14% Similarity=0.153 Sum_probs=110.5
Q ss_pred EEEEeccCCcccEEEEEEcccCCCCeEEEeecCCeEEEEeCCCCCCCCCCeeeeecceeeEEEeeeeeccccccccCCCC
Q 021291 53 VSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEP 132 (314)
Q Consensus 53 ~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 132 (314)
+..+.+|.. .|..++-.. +.+.|++++.|++|++|.++...-. .....|.|..
T Consensus 728 L~nf~GH~~--~iRai~Aid--NENSFiSASkDKTVKLWSik~EgD~---------~~tsaCQfTY-------------- 780 (1034)
T KOG4190|consen 728 LCNFTGHQE--KIRAIAAID--NENSFISASKDKTVKLWSIKPEGDE---------IGTSACQFTY-------------- 780 (1034)
T ss_pred eecccCcHH--HhHHHHhcc--cccceeeccCCceEEEEEeccccCc---------cccceeeeEh--------------
Confidence 345567774 377776655 6689999999999999998753211 1111121111
Q ss_pred cceeeccCCceeeecCCCCCC----ceeccCCCceEEEeecCcCeEEEEecCCCceeeeecccccCCCCCcCCCCCceee
Q 021291 133 KDCYEREVGETVDTDSLCDSK----DDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCM 208 (314)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~g~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~ 208 (314)
..|.. +.|-.+.+++ + + .|+.|.+||.--++.+..+.... .|. ..+.+.
T Consensus 781 ----------------~aHkk~i~~igfL~~lr~i-~-S--cD~giHlWDPFigr~Laq~~dap-----k~~--a~~~ik 833 (1034)
T KOG4190|consen 781 ----------------QAHKKPIHDIGFLADLRSI-A-S--CDGGIHLWDPFIGRLLAQMEDAP-----KEG--AGGNIK 833 (1034)
T ss_pred ----------------hhccCcccceeeeecccee-e-e--ccCcceeecccccchhHhhhcCc-----ccC--CCceeE
Confidence 11111 3344444433 2 2 37899999998888776554210 121 122333
Q ss_pred eEEEecCCCCCCceEEEEeecCCcEEEEEccCCCCceEeee-----cCCcceEEEEEeCCCCeEEEecCCCcEEEEecCC
Q 021291 209 AVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMK-----VHLEPVLCLSIDESCNGGISGGADQKIVLYNLDH 283 (314)
Q Consensus 209 ~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~~~~~-----~h~~~v~~~~~~~~~~~l~s~s~dg~i~iw~~~~ 283 (314)
++- +-+ ...+++.++...+|+++|.+. ..-..+++ +....+.+++..+.|++++.+=..|.|.+.|.++
T Consensus 834 cl~--nv~---~~iliAgcsaeSTVKl~DaRs-ce~~~E~kVcna~~Pna~~R~iaVa~~GN~lAa~LSnGci~~LDaR~ 907 (1034)
T KOG4190|consen 834 CLE--NVD---RHILIAGCSAESTVKLFDARS-CEWTCELKVCNAPGPNALTRAIAVADKGNKLAAALSNGCIAILDARN 907 (1034)
T ss_pred ecc--cCc---chheeeeccchhhheeeeccc-ccceeeEEeccCCCCchheeEEEeccCcchhhHHhcCCcEEEEecCC
Confidence 332 112 221344447889999999997 65555554 3345688999999999999999999999999999
Q ss_pred CeeeE
Q 021291 284 STYVL 288 (314)
Q Consensus 284 ~~~~~ 288 (314)
|+.+.
T Consensus 908 G~vIN 912 (1034)
T KOG4190|consen 908 GKVIN 912 (1034)
T ss_pred Cceec
Confidence 98664
No 297
>PRK04043 tolB translocation protein TolB; Provisional
Probab=98.75 E-value=9.3e-06 Score=68.62 Aligned_cols=195 Identities=11% Similarity=0.060 Sum_probs=107.8
Q ss_pred CCeEEEEeCCCCeEEEEEeccCCcccEEEEEEcccCCCCe-EEEeec---CCeEEEEeCCCCCCCCCCeeeeecceeeEE
Q 021291 39 GGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNK-VISQGR---DGTVKCWDIENGGLSSNPSLTIKTNSYHFC 114 (314)
Q Consensus 39 dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-l~s~~~---dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~ 114 (314)
...|.+-|.+... .+.+.... .+..-.|+| +++. ++..+. +..|.++|+.+++... +..... ....
T Consensus 168 ~~~l~~~d~dg~~-~~~~~~~~---~~~~p~wSp--DG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~--lt~~~g--~~~~ 237 (419)
T PRK04043 168 KSNIVLADYTLTY-QKVIVKGG---LNIFPKWAN--KEQTAFYYTSYGERKPTLYKYNLYTGKKEK--IASSQG--MLVV 237 (419)
T ss_pred cceEEEECCCCCc-eeEEccCC---CeEeEEECC--CCCcEEEEEEccCCCCEEEEEECCCCcEEE--EecCCC--cEEe
Confidence 3456666654333 33232222 378899999 9884 554433 3568899998875321 111111 0101
Q ss_pred EeeeeeccccccccCCCCcceeeccCCceeeecCCCCCCceeccCCCceEEEee-cCcCeEEEEecCCCceeeeeccccc
Q 021291 115 KLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAG-EQLSEVEIWDLNTAERCTRLHQNSC 193 (314)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g-~~d~~i~vwd~~~~~~~~~~~~~~~ 193 (314)
..|+|||+.++++.. ..+..|.++|+.+++. ..+.
T Consensus 238 ---------------------------------------~~~SPDG~~la~~~~~~g~~~Iy~~dl~~g~~-~~LT---- 273 (419)
T PRK04043 238 ---------------------------------------SDVSKDGSKLLLTMAPKGQPDIYLYDTNTKTL-TQIT---- 273 (419)
T ss_pred ---------------------------------------eEECCCCCEEEEEEccCCCcEEEEEECCCCcE-EEcc----
Confidence 348999988766433 2235788889887763 3333
Q ss_pred CCCCCcCCCCCceeeeEEEecCCCCCCceEEEEeecCC--cEEEEEccCCCCceEeeecCCcceEEEEEeCCCCeEEEec
Q 021291 194 GGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDG--SILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGG 271 (314)
Q Consensus 194 ~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg--~i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s 271 (314)
.+.. ...... |+|| |+.++++....+ .|++.|+.. ++..+... .... ...|+|+|++|+-.+
T Consensus 274 ----~~~~----~d~~p~-~SPD---G~~I~F~Sdr~g~~~Iy~~dl~~-g~~~rlt~-~g~~--~~~~SPDG~~Ia~~~ 337 (419)
T PRK04043 274 ----NYPG----IDVNGN-FVED---DKRIVFVSDRLGYPNIFMKKLNS-GSVEQVVF-HGKN--NSSVSTYKNYIVYSS 337 (419)
T ss_pred ----cCCC----ccCccE-ECCC---CCEEEEEECCCCCceEEEEECCC-CCeEeCcc-CCCc--CceECCCCCEEEEEE
Confidence 1111 122233 9998 553444444444 577778875 44322222 1112 248999999886665
Q ss_pred CC---------CcEEEEecCCCeeeEe-----eeeeeecCCCceec
Q 021291 272 AD---------QKIVLYNLDHSTYVLF-----GIGFVCDQEGNKFG 303 (314)
Q Consensus 272 ~d---------g~i~iw~~~~~~~~~~-----~~~~~~~~~~~~~~ 303 (314)
.. ..|.+.|++++..... ....+++|+|..+.
T Consensus 338 ~~~~~~~~~~~~~I~v~d~~~g~~~~LT~~~~~~~p~~SPDG~~I~ 383 (419)
T PRK04043 338 RETNNEFGKNTFNLYLISTNSDYIRRLTANGVNQFPRFSSDGGSIM 383 (419)
T ss_pred cCCCcccCCCCcEEEEEECCCCCeEECCCCCCcCCeEECCCCCEEE
Confidence 43 2678888877754321 11245667776543
No 298
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=98.73 E-value=1.2e-07 Score=88.48 Aligned_cols=189 Identities=11% Similarity=0.165 Sum_probs=121.9
Q ss_pred CEEEEecCCCeEEEEeCCCCeEEEEEeccCCcccEEEEEEcccCCCCeEEEeecCCeEEEEeCCCCCCCCCCeeeeecce
Q 021291 31 PILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGGLSSNPSLTIKTNS 110 (314)
Q Consensus 31 ~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~ 110 (314)
+.+.....++...-|..+-+... ++.+- ..|.++.-+| ...+-+||+.||.|++|....++.+. ......
T Consensus 2181 ~~~~~~n~~~~~~tq~~~~~~~~--~k~~v--~~v~r~~sHp--~~~~Yltgs~dgsv~~~~w~~~~~v~----~~rt~g 2250 (2439)
T KOG1064|consen 2181 NRFTPSNLPWLGSTQTSRGASVM--IKHPV--ENVRRMTSHP--SDPYYLTGSQDGSVRMFEWGHGQQVV----CFRTAG 2250 (2439)
T ss_pred ccCCcccCCccccceecccceeE--eeccc--CceeeecCCC--CCceEEecCCCceEEEEeccCCCeEE----EeeccC
Confidence 34444455565655654433222 22233 3388888888 66889999999999999988775422 222211
Q ss_pred eeEEEeeeeeccccccccCCCCcceeeccCCceeeecCCCCCCceeccCCCceEEEeecCcCeEEEEecCCCceeeeecc
Q 021291 111 YHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQ 190 (314)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~vwd~~~~~~~~~~~~ 190 (314)
. .. . ....|+.+|+.+-+ +..||.+.+|... .+.....+
T Consensus 2251 ~-s~-v-----------------------------------tr~~f~~qGnk~~i--~d~dg~l~l~q~~-pk~~~s~q- 2289 (2439)
T KOG1064|consen 2251 N-SR-V-----------------------------------TRSRFNHQGNKFGI--VDGDGDLSLWQAS-PKPYTSWQ- 2289 (2439)
T ss_pred c-ch-h-----------------------------------hhhhhcccCCceee--eccCCceeecccC-Ccceeccc-
Confidence 1 00 0 00457788876654 3447999999987 34443333
Q ss_pred cccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEe---ecCCcEEEEEccCCCCceEeeecCCcceEEEEEeCCCCeE
Q 021291 191 NSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAG---YEDGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGG 267 (314)
Q Consensus 191 ~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g---~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l 267 (314)
.|... ..... |-.. .++++ +.++.+.+||...+...-.....|.+.++++++-|..+.|
T Consensus 2290 -------chnk~----~~Df~-Fi~s------~~~tag~s~d~~n~~lwDtl~~~~~s~v~~~H~~gaT~l~~~P~~qll 2351 (2439)
T KOG1064|consen 2290 -------CHNKA----LSDFR-FIGS------LLATAGRSSDNRNVCLWDTLLPPMNSLVHTCHDGGATVLAYAPKHQLL 2351 (2439)
T ss_pred -------cCCcc----cccee-eeeh------hhhccccCCCCCcccchhcccCcccceeeeecCCCceEEEEcCcceEE
Confidence 34221 22222 3321 44444 3568899999876454444448999999999999999999
Q ss_pred EEecCCCcEEEEecCCCeeeE
Q 021291 268 ISGGADQKIVLYNLDHSTYVL 288 (314)
Q Consensus 268 ~s~s~dg~i~iw~~~~~~~~~ 288 (314)
+|||.+|.|++||++..+...
T Consensus 2352 isggr~G~v~l~D~rqrql~h 2372 (2439)
T KOG1064|consen 2352 ISGGRKGEVCLFDIRQRQLRH 2372 (2439)
T ss_pred EecCCcCcEEEeehHHHHHHH
Confidence 999999999999998776543
No 299
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.73 E-value=1.2e-07 Score=76.34 Aligned_cols=211 Identities=14% Similarity=0.077 Sum_probs=143.8
Q ss_pred CCCceeEEEEccCCCEEEEecCCCeEEEEeCCC--C-eEEEEEeccCCcccEEEEEEcccCCCCeEEEeec-CCeEEEEe
Q 021291 17 HRASVTDVCFHQTKPILFAGTTGGELRIWDTVQ--H-RTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGR-DGTVKCWD 92 (314)
Q Consensus 17 h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~--~-~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~-dg~v~iwd 92 (314)
|.+.|+.+.-.. .+++.+++.||.++.|.-.. + +.+..+..|. ..|.+++.+- ++-++.|.+. |..++++|
T Consensus 8 hrd~i~hv~~tk-a~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL--~~I~sl~~S~--dg~L~~Sv~d~Dhs~KvfD 82 (558)
T KOG0882|consen 8 HRDVITHVFPTK-AKFIIQASLDGHKKFWKKSRISGVEFVKHFRAHL--GVILSLAVSY--DGWLFRSVEDPDHSVKVFD 82 (558)
T ss_pred ccceeeeEeeeh-hheEEeeecchhhhhcCCCCccceeehhhhHHHH--HHHHhhhccc--cceeEeeccCcccceeEEE
Confidence 788888776653 56899999999999998432 1 3344555666 4488999888 8889999787 99999999
Q ss_pred CCCCCCCCCCeeeeecceeeEEEeeeeeccccccccCCCCcceeeccCCceeeecCCCCCCceeccC-CCceEEEeecCc
Q 021291 93 IENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAE-GPKYMAVAGEQL 171 (314)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~g~~d 171 (314)
+++-.... .+.+...+...+.+ .++. -..+++++...+
T Consensus 83 vEn~Dmin--miKL~~lPg~a~wv---------------------------------------~skGd~~s~IAVs~~~s 121 (558)
T KOG0882|consen 83 VENFDMIN--MIKLVDLPGFAEWV---------------------------------------TSKGDKISLIAVSLFKS 121 (558)
T ss_pred eeccchhh--hcccccCCCceEEe---------------------------------------cCCCCeeeeEEeecccC
Confidence 98866543 22222222222211 1111 122466666678
Q ss_pred CeEEEEecCCCce-eeeecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEeecCCcEEEEEccCCCC-----c-
Q 021291 172 SEVEIWDLNTAER-CTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGI-----P- 244 (314)
Q Consensus 172 ~~i~vwd~~~~~~-~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~-----~- 244 (314)
+.+.++|-....+ ..-+.. -| ..++..+. +.|. +. .+++....|.|.-|....+-+ .
T Consensus 122 g~i~VvD~~~d~~q~~~fkk-------lH----~sPV~~i~-y~qa---~D-s~vSiD~~gmVEyWs~e~~~qfPr~~l~ 185 (558)
T KOG0882|consen 122 GKIFVVDGFGDFCQDGYFKK-------LH----FSPVKKIR-YNQA---GD-SAVSIDISGMVEYWSAEGPFQFPRTNLN 185 (558)
T ss_pred CCcEEECCcCCcCccceecc-------cc----cCceEEEE-eecc---cc-ceeeccccceeEeecCCCcccCcccccc
Confidence 9999999875542 222221 23 45677776 8887 44 788888899999998872111 1
Q ss_pred --------eEeeecCCcceEEEEEeCCCCeEEEecCCCcEEEEecCCCeeeEe
Q 021291 245 --------LTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTYVLF 289 (314)
Q Consensus 245 --------~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~iw~~~~~~~~~~ 289 (314)
+..+........++.|+|++..+.+-+.|..|+++.+.+++.+..
T Consensus 186 ~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~DrkVR~F~~KtGklvqe 238 (558)
T KOG0882|consen 186 FELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLNPDRKVRGFVFKTGKLVQE 238 (558)
T ss_pred ccccccchhhcccccccCccceEEccccCcccccCcccEEEEEEeccchhhhh
Confidence 111222345678999999999999999999999999999987654
No 300
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=98.73 E-value=4.3e-08 Score=76.25 Aligned_cols=130 Identities=15% Similarity=0.205 Sum_probs=88.5
Q ss_pred CCCceeEEEEccCCCEEEEecCCCeEEEEeCCCC-----eEEEEEeccCCcccEEEEEEcccCCCCeEEEeecCCeEEEE
Q 021291 17 HRASVTDVCFHQTKPILFAGTTGGELRIWDTVQH-----RTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCW 91 (314)
Q Consensus 17 h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~-----~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~v~iw 91 (314)
-++.|.++.|...+++++.|..+|.|...|++.+ .+...+ -|. ..|+++..... ++++|++.+.+|+|++|
T Consensus 251 sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rl-yh~--Ssvtslq~Lq~-s~q~LmaS~M~gkikLy 326 (425)
T KOG2695|consen 251 SKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRL-YHD--SSVTSLQILQF-SQQKLMASDMTGKIKLY 326 (425)
T ss_pred cchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceEEE-EcC--cchhhhhhhcc-ccceEeeccCcCceeEe
Confidence 3567889999988899999999999999999864 233333 355 44888876543 45889999999999999
Q ss_pred eCCCCCCCCC-CeeeeecceeeEEEeeeeeccccccccCCCCcceeeccCCceeeecCCCCCCceeccCCCceEEEeecC
Q 021291 92 DIENGGLSSN-PSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQ 170 (314)
Q Consensus 92 d~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 170 (314)
|.+.-++... ..+..+.+...... +-+.+.. .+++ +++.
T Consensus 327 D~R~~K~~~~V~qYeGHvN~~a~l~--------------------------------------~~v~~ee-g~I~-s~Gd 366 (425)
T KOG2695|consen 327 DLRATKCKKSVMQYEGHVNLSAYLP--------------------------------------AHVKEEE-GSIF-SVGD 366 (425)
T ss_pred eehhhhcccceeeeecccccccccc--------------------------------------ccccccc-ceEE-EccC
Confidence 9987665320 01111111111100 1133333 3344 4667
Q ss_pred cCeEEEEecCCCceeeeecc
Q 021291 171 LSEVEIWDLNTAERCTRLHQ 190 (314)
Q Consensus 171 d~~i~vwd~~~~~~~~~~~~ 190 (314)
|...+||.++.+..+.+++.
T Consensus 367 DcytRiWsl~~ghLl~tipf 386 (425)
T KOG2695|consen 367 DCYTRIWSLDSGHLLCTIPF 386 (425)
T ss_pred eeEEEEEecccCceeeccCC
Confidence 99999999999999988874
No 301
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=98.70 E-value=2.3e-07 Score=72.31 Aligned_cols=179 Identities=13% Similarity=0.180 Sum_probs=109.0
Q ss_pred CCCCceeEEEEccCCCEEEEecCCCeEEEEeCCCCe-E--EEEEeccCC---cccEEEEEEcccCCCCeEEEeecCCeEE
Q 021291 16 GHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHR-T--VSSSWVHSA---AHGIVSVATGPSIGLNKVISQGRDGTVK 89 (314)
Q Consensus 16 ~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~-~--~~~~~~~~~---~~~v~~~~~~~~~~~~~l~s~~~dg~v~ 89 (314)
+|+-.|+++.++.|+..++++ .|=.|.+|+++--. . +..++.+.- ..-|++..|+|. .-+.|+-.+..|+|+
T Consensus 162 aHtyhiNSIS~NsD~Et~lSA-DdLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~-~cn~f~YSSSKGtIr 239 (433)
T KOG1354|consen 162 AHTYHINSISVNSDKETFLSA-DDLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPH-HCNVFVYSSSKGTIR 239 (433)
T ss_pred cceeEeeeeeecCccceEeec-cceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHh-HccEEEEecCCCcEE
Confidence 688899999999999888875 56679999987432 2 222222211 134889999996 347788888899999
Q ss_pred EEeCCCCCCCCC--CeeeeecceeeEEEeeeeeccccccccCCCCcceeeccCCceeeecCCCCCCceeccCCCceEEEe
Q 021291 90 CWDIENGGLSSN--PSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVA 167 (314)
Q Consensus 90 iwd~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (314)
+-|++...+... .++.....+....-|+ .....-+++.|+++|++++ +
T Consensus 240 LcDmR~~aLCd~hsKlfEepedp~~rsffs----------------------------eiIsSISDvKFs~sGryil--s 289 (433)
T KOG1354|consen 240 LCDMRQSALCDAHSKLFEEPEDPSSRSFFS----------------------------EIISSISDVKFSHSGRYIL--S 289 (433)
T ss_pred EeechhhhhhcchhhhhccccCCcchhhHH----------------------------HHhhhhhceEEccCCcEEE--E
Confidence 999996543211 0111111111111000 0000111166999998776 4
Q ss_pred ecCcCeEEEEecC-CCceeeeecccccCCCCCcCCCC--------Cce---eeeEEEecCCCCCCceEEEEeecCCcEEE
Q 021291 168 GEQLSEVEIWDLN-TAERCTRLHQNSCGGSPNFSSKG--------RGM---CMAVQAYLPSKSQGFVNVLAGYEDGSILV 235 (314)
Q Consensus 168 g~~d~~i~vwd~~-~~~~~~~~~~~~~~~~~~h~~~~--------~~~---~~~~~~~~p~~~~g~~~l~~g~~dg~i~v 235 (314)
-+. -+|++||+. ..+++.+++ -|.... ... -..+. |+.++ . ++++|+....+++
T Consensus 290 RDy-ltvk~wD~nme~~pv~t~~--------vh~~lr~kLc~lYEnD~IfdKFec~-~sg~~---~-~v~TGsy~n~frv 355 (433)
T KOG1354|consen 290 RDY-LTVKLWDLNMEAKPVETYP--------VHEYLRSKLCSLYENDAIFDKFECS-WSGND---S-YVMTGSYNNVFRV 355 (433)
T ss_pred ecc-ceeEEEeccccCCcceEEe--------ehHhHHHHHHHHhhccchhheeEEE-EcCCc---c-eEecccccceEEE
Confidence 443 689999994 555665555 232100 011 12333 77663 3 8999999999999
Q ss_pred EEccC
Q 021291 236 WDIRN 240 (314)
Q Consensus 236 wd~~~ 240 (314)
++...
T Consensus 356 f~~~~ 360 (433)
T KOG1354|consen 356 FNLAR 360 (433)
T ss_pred ecCCC
Confidence 99654
No 302
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=98.69 E-value=2.1e-07 Score=69.83 Aligned_cols=73 Identities=19% Similarity=0.321 Sum_probs=62.0
Q ss_pred eeeEEEecCCCCCCceEEEEeecCCcEEEEEccCCCCceEeeecCCcceEEEEEeC-CCCeEEEecCCCcEEEEecCC
Q 021291 207 CMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDE-SCNGGISGGADQKIVLYNLDH 283 (314)
Q Consensus 207 ~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~s~s~dg~i~iw~~~~ 283 (314)
+.+++ -+|.. +.++++|+.||.+-+||.++...+...+++|..+|+.+-|+| ++..|++++.||.+-.||-.+
T Consensus 182 v~~l~-~hp~q---q~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~Lft~sedGslw~wdas~ 255 (319)
T KOG4714|consen 182 VTALC-SHPAQ---QHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEHLFTCSEDGSLWHWDAST 255 (319)
T ss_pred chhhh-CCccc---ccEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchheeEecCCCcEEEEcCCC
Confidence 56665 77763 238999999999999999997778888999999999999976 456799999999999999774
No 303
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=98.64 E-value=8.3e-06 Score=75.27 Aligned_cols=243 Identities=12% Similarity=0.079 Sum_probs=129.9
Q ss_pred CCceeEEEEccCCCEEEEecCCCeEEEEeCCCCeEEE------------------------EEeccC-------------
Q 021291 18 RASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVS------------------------SSWVHS------------- 60 (314)
Q Consensus 18 ~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~------------------------~~~~~~------------- 60 (314)
...|.|++||||+..|+..+.+++|.+... +.+.+. .|+|..
T Consensus 120 d~GI~a~~WSPD~Ella~vT~~~~l~~mt~-~fd~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~ 198 (928)
T PF04762_consen 120 DSGILAASWSPDEELLALVTGEGNLLLMTR-DFDPISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTV 198 (928)
T ss_pred cCcEEEEEECCCcCEEEEEeCCCEEEEEec-cceEEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCC
Confidence 578999999999999999999999988752 211111 111110
Q ss_pred ---------CcccEEEEEEcccCCCCeEEEeec---C---CeEEEEeCCCCCCCCCCeeeeecceeeEEEeeeeeccccc
Q 021291 61 ---------AAHGIVSVATGPSIGLNKVISQGR---D---GTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYAN 125 (314)
Q Consensus 61 ---------~~~~v~~~~~~~~~~~~~l~s~~~---d---g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (314)
..+.-..|+|-. ||.+|++.+. . ..++||+-+ |.+.. ..+-...-.....+.+.+...+.
T Consensus 199 ~~~d~~~~s~dd~~~~ISWRG--DG~yFAVss~~~~~~~~R~iRVy~Re-G~L~s--tSE~v~gLe~~l~WrPsG~lIA~ 273 (928)
T PF04762_consen 199 PKVDEGKLSWDDGRVRISWRG--DGEYFAVSSVEPETGSRRVIRVYSRE-GELQS--TSEPVDGLEGALSWRPSGNLIAS 273 (928)
T ss_pred CccccCccccCCCceEEEECC--CCcEEEEEEEEcCCCceeEEEEECCC-ceEEe--ccccCCCccCCccCCCCCCEEEE
Confidence 001345788888 9999997764 2 579999976 43211 00000000111122222222222
Q ss_pred cccCCCCcceeeccCCceeee--cCCC--CCC----ceeccCCCceEEEeecCcCeEEEEecCCCc--eeeeecccccCC
Q 021291 126 AKQANEPKDCYEREVGETVDT--DSLC--DSK----DDVPAEGPKYMAVAGEQLSEVEIWDLNTAE--RCTRLHQNSCGG 195 (314)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~--~~~~--~~~----~~~~~~~~~~~~~~g~~d~~i~vwd~~~~~--~~~~~~~~~~~~ 195 (314)
.-.......+.-++.+..... .++. ... +.|+++++-+.+ .- . ..|.+|-..+.. ..+.+..
T Consensus 274 ~q~~~~~~~VvFfErNGLrhgeF~l~~~~~~~~v~~l~Wn~ds~iLAv-~~-~-~~vqLWt~~NYHWYLKqei~~----- 345 (928)
T PF04762_consen 274 SQRLPDRHDVVFFERNGLRHGEFTLRFDPEEEKVIELAWNSDSEILAV-WL-E-DRVQLWTRSNYHWYLKQEIRF----- 345 (928)
T ss_pred EEEcCCCcEEEEEecCCcEeeeEecCCCCCCceeeEEEECCCCCEEEE-Ee-c-CCceEEEeeCCEEEEEEEEEc-----
Confidence 111112233333333222111 1221 111 999999975544 33 2 349999887654 2222221
Q ss_pred CCCcCCCCCceeeeEEEecCCCCCCceEEEEeecCCcEEEEEcc----CC-C------CceEeee---------------
Q 021291 196 SPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIR----NP-G------IPLTAMK--------------- 249 (314)
Q Consensus 196 ~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~----~~-~------~~~~~~~--------------- 249 (314)
. .......+. |+|..+ . .|...+.+|.+..++.. .. + ..+..+.
T Consensus 346 ----~--~~~~~~~~~-Wdpe~p-~--~L~v~t~~g~~~~~~~~~~v~~s~~~~~~D~g~vaVIDG~~lllTpf~~a~VP 415 (928)
T PF04762_consen 346 ----S--SSESVNFVK-WDPEKP-L--RLHVLTSNGQYEIYDFAWDVSRSPGSSPNDNGTVAVIDGNKLLLTPFRRAVVP 415 (928)
T ss_pred ----c--CCCCCCceE-ECCCCC-C--EEEEEecCCcEEEEEEEEEEEecCCCCccCceEEEEEeCCeEEEecccccCCC
Confidence 0 011122255 998744 2 56666665666555432 10 0 0111111
Q ss_pred --------cCCcceEEEEEeCCCCeEEEecCCCcEEEEecCCC
Q 021291 250 --------VHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHS 284 (314)
Q Consensus 250 --------~h~~~v~~~~~~~~~~~l~s~s~dg~i~iw~~~~~ 284 (314)
....+|.+++|++++..+++-..||.|.+|.....
T Consensus 416 PPMs~~~l~~~~~v~~vaf~~~~~~~avl~~d~~l~~~~~~~~ 458 (928)
T PF04762_consen 416 PPMSSYELELPSPVNDVAFSPSNSRFAVLTSDGSLSIYEWDLK 458 (928)
T ss_pred chHhceEEcCCCCcEEEEEeCCCCeEEEEECCCCEEEEEecCC
Confidence 12568999999998877888999999999986543
No 304
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=98.61 E-value=0.00012 Score=57.19 Aligned_cols=185 Identities=14% Similarity=0.093 Sum_probs=110.4
Q ss_pred CCCeEEEEeCCCCeEEEEEeccCCcccEEEEEEcccCCCCeEEEeecCCeEEEEeCCCCCCCCCCeeeeecceeeEEEee
Q 021291 38 TGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLS 117 (314)
Q Consensus 38 ~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 117 (314)
.+|+|..||..+|+.+.............+.... ++..+++++.++.|..||..+++... .......... .
T Consensus 1 ~~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~---~~~~v~~~~~~~~l~~~d~~tG~~~W--~~~~~~~~~~-~--- 71 (238)
T PF13360_consen 1 DDGTLSALDPRTGKELWSYDLGPGIGGPVATAVP---DGGRVYVASGDGNLYALDAKTGKVLW--RFDLPGPISG-A--- 71 (238)
T ss_dssp -TSEEEEEETTTTEEEEEEECSSSCSSEEETEEE---ETTEEEEEETTSEEEEEETTTSEEEE--EEECSSCGGS-G---
T ss_pred CCCEEEEEECCCCCEEEEEECCCCCCCccceEEE---eCCEEEEEcCCCEEEEEECCCCCEEE--Eeeccccccc-e---
Confidence 3789999999999999888652211222322332 34778888899999999999997644 1121111000 0
Q ss_pred eeeccccccccCCCCcceeeccCCceeeecCCCCCCceeccCCCceEEEeecCcCeEEEEecCCCceeeeecccccCCCC
Q 021291 118 LVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSP 197 (314)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~vwd~~~~~~~~~~~~~~~~~~~ 197 (314)
....+..+++.+ .++.++.+|..+++.+.....
T Consensus 72 --------------------------------------~~~~~~~v~v~~--~~~~l~~~d~~tG~~~W~~~~------- 104 (238)
T PF13360_consen 72 --------------------------------------PVVDGGRVYVGT--SDGSLYALDAKTGKVLWSIYL------- 104 (238)
T ss_dssp --------------------------------------EEEETTEEEEEE--TTSEEEEEETTTSCEEEEEEE-------
T ss_pred --------------------------------------eeeccccccccc--ceeeeEecccCCcceeeeecc-------
Confidence 011234444433 467999999999998887421
Q ss_pred CcCCCCC-ceeeeEEEecCCCCCCceEEEEeecCCcEEEEEccCCCCceEeeecCCcc----------e-EEEEEeCCCC
Q 021291 198 NFSSKGR-GMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHLEP----------V-LCLSIDESCN 265 (314)
Q Consensus 198 ~h~~~~~-~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~h~~~----------v-~~~~~~~~~~ 265 (314)
....... ....... +. +. .++++..++.|..+|.++ ++.+......... + ..+.+. ++
T Consensus 105 ~~~~~~~~~~~~~~~-~~-----~~-~~~~~~~~g~l~~~d~~t-G~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~-~~- 174 (238)
T PF13360_consen 105 TSSPPAGVRSSSSPA-VD-----GD-RLYVGTSSGKLVALDPKT-GKLLWKYPVGEPRGSSPISSFSDINGSPVIS-DG- 174 (238)
T ss_dssp -SSCTCSTB--SEEE-EE-----TT-EEEEEETCSEEEEEETTT-TEEEEEEESSTT-SS--EEEETTEEEEEECC-TT-
T ss_pred ccccccccccccCce-Ee-----cC-EEEEEeccCcEEEEecCC-CcEEEEeecCCCCCCcceeeecccccceEEE-CC-
Confidence 1111111 1111222 33 22 688888899999999998 8887777653322 1 222223 44
Q ss_pred eEEEecCCCc-EEEEecCCCeeeEe
Q 021291 266 GGISGGADQK-IVLYNLDHSTYVLF 289 (314)
Q Consensus 266 ~l~s~s~dg~-i~iw~~~~~~~~~~ 289 (314)
.+..++.++. +.+ |+.+++.++.
T Consensus 175 ~v~~~~~~g~~~~~-d~~tg~~~w~ 198 (238)
T PF13360_consen 175 RVYVSSGDGRVVAV-DLATGEKLWS 198 (238)
T ss_dssp EEEEECCTSSEEEE-ETTTTEEEEE
T ss_pred EEEEEcCCCeEEEE-ECCCCCEEEE
Confidence 6666777775 555 9999997663
No 305
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.56 E-value=1.8e-05 Score=68.79 Aligned_cols=164 Identities=17% Similarity=0.199 Sum_probs=100.5
Q ss_pred ecCCCCceeEEEEcc-------------CCCEEEEecCCCeEEEEeCCCCeEEEEEeccCCcccEEEEEEccc---CCCC
Q 021291 14 LRGHRASVTDVCFHQ-------------TKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPS---IGLN 77 (314)
Q Consensus 14 l~~h~~~v~~~~~~~-------------~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~---~~~~ 77 (314)
|..|.+.|.-..+.- +|.+++||+.||.|.|-.+.+.+....+..+ .++.+++++|. ...+
T Consensus 54 ~GtH~g~v~~~~~~~~~~~~~~~s~~~~~Gey~asCS~DGkv~I~sl~~~~~~~~~df~---rpiksial~Pd~~~~~sk 130 (846)
T KOG2066|consen 54 LGTHRGAVYLTTCQGNPKTNFDHSSSILEGEYVASCSDDGKVVIGSLFTDDEITQYDFK---RPIKSIALHPDFSRQQSK 130 (846)
T ss_pred eccccceEEEEecCCcccccccccccccCCceEEEecCCCcEEEeeccCCccceeEecC---CcceeEEeccchhhhhhh
Confidence 445666665555443 4999999999999999999988887776655 55999999992 1256
Q ss_pred eEEEeecCCeEEEEeCCCCCCCCCCeeeeecceeeEEEeeeeeccccccccCCCCcceeeccCCceeeecCCCCCCceec
Q 021291 78 KVISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVP 157 (314)
Q Consensus 78 ~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (314)
.+++|+.-| +.++.-+=.......+..-...+.. +.+
T Consensus 131 ~fv~GG~ag-lvL~er~wlgnk~~v~l~~~eG~I~------------------------------------------~i~ 167 (846)
T KOG2066|consen 131 QFVSGGMAG-LVLSERNWLGNKDSVVLSEGEGPIH------------------------------------------SIK 167 (846)
T ss_pred heeecCcce-EEEehhhhhcCccceeeecCccceE------------------------------------------EEE
Confidence 899999988 7776532111111000111111111 122
Q ss_pred cCCCceEEEeecCcCeEEEEecCCCceeeeecccccCCCCCcCC-CCCceeeeEEEecCCCCCCceEEEEeecCCcEEEE
Q 021291 158 AEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSS-KGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVW 236 (314)
Q Consensus 158 ~~~~~~~~~~g~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~h~~-~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vw 236 (314)
..|+ ++|- ++ |--|++||+.+++.+..++.+ +.. ........+. |.++ . .++.|-.| +|+|.
T Consensus 168 W~g~-lIAW-an-d~Gv~vyd~~~~~~l~~i~~p-------~~~~R~e~fpphl~-W~~~---~--~LVIGW~d-~v~i~ 230 (846)
T KOG2066|consen 168 WRGN-LIAW-AN-DDGVKVYDTPTRQRLTNIPPP-------SQSVRPELFPPHLH-WQDE---D--RLVIGWGD-SVKIC 230 (846)
T ss_pred ecCc-EEEE-ec-CCCcEEEeccccceeeccCCC-------CCCCCcccCCCceE-ecCC---C--eEEEecCC-eEEEE
Confidence 3344 4443 33 344999999999888877753 211 1112233444 7765 2 57777655 78888
Q ss_pred EccC
Q 021291 237 DIRN 240 (314)
Q Consensus 237 d~~~ 240 (314)
.++.
T Consensus 231 ~I~~ 234 (846)
T KOG2066|consen 231 SIKK 234 (846)
T ss_pred EEec
Confidence 8873
No 306
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=98.54 E-value=3.7e-06 Score=72.07 Aligned_cols=200 Identities=11% Similarity=0.073 Sum_probs=125.2
Q ss_pred CCCceeEEEEccCCCEEEEecCCCeEEEEeCCCCe---------------EEEEEeccCCcccEEEEEEcccCCCCeEEE
Q 021291 17 HRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHR---------------TVSSSWVHSAAHGIVSVATGPSIGLNKVIS 81 (314)
Q Consensus 17 h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~---------------~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s 81 (314)
......|++|+....++|.|+.||.++|..+.+.. .-+++.+|... |.-+.|+. +.+.|-+
T Consensus 13 nnvkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~s--V~vvTWNe--~~QKLTt 88 (1189)
T KOG2041|consen 13 NNVKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNAS--VMVVTWNE--NNQKLTT 88 (1189)
T ss_pred CCceEEEEEEcccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcce--EEEEEecc--ccccccc
Confidence 34567899999988899999999999999887531 12456788854 99999999 7789999
Q ss_pred eecCCeEEEEeCCCCCCCCCCeeeeecceeeEEEeeeeeccccccccCCCCcceeeccCCceeeecCCCCCCceeccCCC
Q 021291 82 QGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGP 161 (314)
Q Consensus 82 ~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (314)
...+|-|.+|-+-.+....+ +.-.... ....+ ++|..+|.
T Consensus 89 SDt~GlIiVWmlykgsW~EE--MiNnRnK--SvV~S------------------------------------msWn~dG~ 128 (1189)
T KOG2041|consen 89 SDTSGLIIVWMLYKGSWCEE--MINNRNK--SVVVS------------------------------------MSWNLDGT 128 (1189)
T ss_pred cCCCceEEEEeeecccHHHH--HhhCcCc--cEEEE------------------------------------EEEcCCCc
Confidence 99999999999887765331 1111111 11111 45777777
Q ss_pred ceEEEeecCcCeEEEEecCCCceee-eecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEeecCCcEEEEEccC
Q 021291 162 KYMAVAGEQLSEVEIWDLNTAERCT-RLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRN 240 (314)
Q Consensus 162 ~~~~~~g~~d~~i~vwd~~~~~~~~-~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~ 240 (314)
.+.++ ..||.|.+=.+...+... .++ + .....+. |++| .+ .++.+-.+|.+.++|..-
T Consensus 129 kIcIv--YeDGavIVGsvdGNRIwgKeLk--------g------~~l~hv~-ws~D---~~-~~Lf~~ange~hlydnqg 187 (1189)
T KOG2041|consen 129 KICIV--YEDGAVIVGSVDGNRIWGKELK--------G------QLLAHVL-WSED---LE-QALFKKANGETHLYDNQG 187 (1189)
T ss_pred EEEEE--EccCCEEEEeeccceecchhcc--------h------hecccee-eccc---HH-HHHhhhcCCcEEEecccc
Confidence 66542 335666555544322111 111 1 1222344 9998 33 677778889999999762
Q ss_pred CC------CceEe----eecCCcceEEEEE--------eCCCCeEEEecCCCcEEEEec
Q 021291 241 PG------IPLTA----MKVHLEPVLCLSI--------DESCNGGISGGADQKIVLYNL 281 (314)
Q Consensus 241 ~~------~~~~~----~~~h~~~v~~~~~--------~~~~~~l~s~s~dg~i~iw~~ 281 (314)
.- .+.-. +......|-.+.| -|+...|+.+-..|.+.|-.-
T Consensus 188 nF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP~lavcy~nGr~QiMR~ 246 (1189)
T KOG2041|consen 188 NFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRPRLAVCYANGRMQIMRS 246 (1189)
T ss_pred cHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCCCEEEEEEcCceehhhhh
Confidence 10 11111 1111223556666 357777888888888777543
No 307
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=98.48 E-value=1.1e-06 Score=73.69 Aligned_cols=76 Identities=16% Similarity=0.202 Sum_probs=63.2
Q ss_pred CCCCceeEEEEccCCCEEEEecCCCeEEEEeCCCCeEEEEEeccCCcccEEEEEEcccCCCCeEEEeecCCeEEEEeCCC
Q 021291 16 GHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIEN 95 (314)
Q Consensus 16 ~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~ 95 (314)
.....|.|++++|+...|+.|+.||.|.+||...+..... ... -....++|+| +|..|++|+..|.+.+||+.-
T Consensus 257 pL~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~t~~~--ka~--~~P~~iaWHp--~gai~~V~s~qGelQ~FD~AL 330 (545)
T PF11768_consen 257 PLPSQVICCARSPSEDKLVLGCEDGSIILYDTTRGVTLLA--KAE--FIPTLIAWHP--DGAIFVVGSEQGELQCFDMAL 330 (545)
T ss_pred ecCCcceEEecCcccceEEEEecCCeEEEEEcCCCeeeee--eec--ccceEEEEcC--CCcEEEEEcCCceEEEEEeec
Confidence 4678899999999999999999999999999876533322 222 2378999999 999999999999999999975
Q ss_pred CC
Q 021291 96 GG 97 (314)
Q Consensus 96 ~~ 97 (314)
..
T Consensus 331 sp 332 (545)
T PF11768_consen 331 SP 332 (545)
T ss_pred Cc
Confidence 53
No 308
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=98.48 E-value=4.2e-05 Score=64.68 Aligned_cols=226 Identities=12% Similarity=0.067 Sum_probs=119.5
Q ss_pred CCEEEEecCCCeEEEEeCCCCeEEEEEeccCCcccEEE-EEEcccCCCCeEEEeecCCeEEEEeCCCCCCCCCCeeeeec
Q 021291 30 KPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVS-VATGPSIGLNKVISQGRDGTVKCWDIENGGLSSNPSLTIKT 108 (314)
Q Consensus 30 ~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~-~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~ 108 (314)
+..++.++.+|.+..+|.++|+.+.+.+... .+.+ ... .+..++.+..++.|.-+|.++++..++ .....
T Consensus 120 ~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~---~~~ssP~v----~~~~v~v~~~~g~l~ald~~tG~~~W~--~~~~~ 190 (394)
T PRK11138 120 GGKVYIGSEKGQVYALNAEDGEVAWQTKVAG---EALSRPVV----SDGLVLVHTSNGMLQALNESDGAVKWT--VNLDV 190 (394)
T ss_pred CCEEEEEcCCCEEEEEECCCCCCcccccCCC---ceecCCEE----ECCEEEEECCCCEEEEEEccCCCEeee--ecCCC
Confidence 4467778889999999999999888776442 1222 112 235677778899999999999987652 11111
Q ss_pred ceeeEE-Eeeeeec-cccccccCCCCcceeeccCCceeee-cCCC----CC-----Cceecc--CCCceEEEeecCcCeE
Q 021291 109 NSYHFC-KLSLVKE-PYANAKQANEPKDCYEREVGETVDT-DSLC----DS-----KDDVPA--EGPKYMAVAGEQLSEV 174 (314)
Q Consensus 109 ~~~~~~-~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~----~~-----~~~~~~--~~~~~~~~~g~~d~~i 174 (314)
...... ..++... .........+....++...++..-. .... .. .+.-+| .+..+++ ++.++.+
T Consensus 191 ~~~~~~~~~sP~v~~~~v~~~~~~g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~--~~~~g~l 268 (394)
T PRK11138 191 PSLTLRGESAPATAFGGAIVGGDNGRVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYA--LAYNGNL 268 (394)
T ss_pred CcccccCCCCCEEECCEEEEEcCCCEEEEEEccCChhhheeccccCCCccchhcccccCCCcEEECCEEEE--EEcCCeE
Confidence 000000 0000000 0000111111122222222221110 0000 00 011111 2344443 3347999
Q ss_pred EEEecCCCceeeeecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEeecCCcEEEEEccCCCCceEeeecCC-c
Q 021291 175 EIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHL-E 253 (314)
Q Consensus 175 ~vwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~h~-~ 253 (314)
..+|+.+++.+-.... +. ...+. .. +. .++.++.+|.+..+|..+ ++.+-....-. .
T Consensus 269 ~ald~~tG~~~W~~~~-------~~-------~~~~~-~~-----~~-~vy~~~~~g~l~ald~~t-G~~~W~~~~~~~~ 326 (394)
T PRK11138 269 VALDLRSGQIVWKREY-------GS-------VNDFA-VD-----GG-RIYLVDQNDRVYALDTRG-GVELWSQSDLLHR 326 (394)
T ss_pred EEEECCCCCEEEeecC-------CC-------ccCcE-EE-----CC-EEEEEcCCCeEEEEECCC-CcEEEcccccCCC
Confidence 9999999987655431 10 01111 22 22 677788899999999987 65543322111 1
Q ss_pred ceEEEEEeCCCCeEEEecCCCcEEEEecCCCeeeEee
Q 021291 254 PVLCLSIDESCNGGISGGADQKIVLYNLDHSTYVLFG 290 (314)
Q Consensus 254 ~v~~~~~~~~~~~l~s~s~dg~i~iw~~~~~~~~~~~ 290 (314)
...+.... +.+|+.++.||.|++.|..+++.++..
T Consensus 327 ~~~sp~v~--~g~l~v~~~~G~l~~ld~~tG~~~~~~ 361 (394)
T PRK11138 327 LLTAPVLY--NGYLVVGDSEGYLHWINREDGRFVAQQ 361 (394)
T ss_pred cccCCEEE--CCEEEEEeCCCEEEEEECCCCCEEEEE
Confidence 12222222 236788889999999999999887753
No 309
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=98.47 E-value=0.00036 Score=55.17 Aligned_cols=219 Identities=9% Similarity=0.057 Sum_probs=125.6
Q ss_pred eEEEEcc-CCCEEEEecCCCe-EEEEeCCCCeEEEEEeccCCcccEEEEEEcccCCCCeEEEeec-----CCeEEEEeCC
Q 021291 22 TDVCFHQ-TKPILFAGTTGGE-LRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGR-----DGTVKCWDIE 94 (314)
Q Consensus 22 ~~~~~~~-~~~~l~s~~~dg~-v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~-----dg~v~iwd~~ 94 (314)
..++.+| .+..++.+-.-|+ ..+||..+++.+..+....+...--.-.|++ ||++|++.-. .|.|-|||..
T Consensus 8 H~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRHFyGHg~fs~--dG~~LytTEnd~~~g~G~IgVyd~~ 85 (305)
T PF07433_consen 8 HGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGRHFYGHGVFSP--DGRLLYTTENDYETGRGVIGVYDAA 85 (305)
T ss_pred cceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCEEecCEEEcC--CCCEEEEeccccCCCcEEEEEEECc
Confidence 4577788 5666777777664 6689999999888776544321223467999 9999998644 5789999998
Q ss_pred CCCCCCCCeeeeecceeeEEEeeeeeccccccccCCCCcceeeccCCceeeecCCCCCCceeccCCCceEEEeec-----
Q 021291 95 NGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGE----- 169 (314)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~----- 169 (314)
.+ ..+ +-++.......-. +.+.|+|+.++++.|+
T Consensus 86 ~~-~~r--i~E~~s~GIGPHe--------------------------------------l~l~pDG~tLvVANGGI~Thp 124 (305)
T PF07433_consen 86 RG-YRR--IGEFPSHGIGPHE--------------------------------------LLLMPDGETLVVANGGIETHP 124 (305)
T ss_pred CC-cEE--EeEecCCCcChhh--------------------------------------EEEcCCCCEEEEEcCCCccCc
Confidence 32 211 1122222111000 3355666555544332
Q ss_pred -----------CcCeEEEEecCCCceeeeecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEeecCC-------
Q 021291 170 -----------QLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDG------- 231 (314)
Q Consensus 170 -----------~d~~i~vwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg------- 231 (314)
.+..+.+.|..+++.+.+...+. ....-.+.-++ +.++ |. .++..-..|
T Consensus 125 d~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp~--------~~~~lSiRHLa-~~~~---G~-V~~a~Q~qg~~~~~~P 191 (305)
T PF07433_consen 125 DSGRAKLNLDTMQPSLVYLDARSGALLEQVELPP--------DLHQLSIRHLA-VDGD---GT-VAFAMQYQGDPGDAPP 191 (305)
T ss_pred ccCceecChhhcCCceEEEecCCCceeeeeecCc--------cccccceeeEE-ecCC---Cc-EEEEEecCCCCCccCC
Confidence 24456667777777766543210 00122444554 6655 43 222222222
Q ss_pred cEEEEEccCCCCceEee-------ecCCcceEEEEEeCCCCeEEEec-CCCcEEEEecCCCeeeEe-----eeeeeecCC
Q 021291 232 SILVWDIRNPGIPLTAM-------KVHLEPVLCLSIDESCNGGISGG-ADQKIVLYNLDHSTYVLF-----GIGFVCDQE 298 (314)
Q Consensus 232 ~i~vwd~~~~~~~~~~~-------~~h~~~v~~~~~~~~~~~l~s~s-~dg~i~iw~~~~~~~~~~-----~~~~~~~~~ 298 (314)
.|.+++.. ..+..+ ..-...|-+|++++++.+++..| .-+.+.+||..+++.+.. ..+++..++
T Consensus 192 Lva~~~~g---~~~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~tsPrGg~~~~~d~~tg~~~~~~~l~D~cGva~~~~ 268 (305)
T PF07433_consen 192 LVALHRRG---GALRLLPAPEEQWRRLNGYIGSIAADRDGRLIAVTSPRGGRVAVWDAATGRLLGSVPLPDACGVAPTDD 268 (305)
T ss_pred eEEEEcCC---CcceeccCChHHHHhhCCceEEEEEeCCCCEEEEECCCCCEEEEEECCCCCEeeccccCceeeeeecCC
Confidence 12233222 222222 23356789999999998775554 567899999999987764 455555555
Q ss_pred C
Q 021291 299 G 299 (314)
Q Consensus 299 ~ 299 (314)
+
T Consensus 269 ~ 269 (305)
T PF07433_consen 269 G 269 (305)
T ss_pred c
Confidence 5
No 310
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=98.46 E-value=4.9e-06 Score=73.15 Aligned_cols=154 Identities=20% Similarity=0.221 Sum_probs=103.9
Q ss_pred ceeEEEEccCCCEEEEecCCCeEEEEeCCCCeEEEEEeccCCcccEEEEEEcccCCCCeEEEeec---------CCeEEE
Q 021291 20 SVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGR---------DGTVKC 90 (314)
Q Consensus 20 ~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~---------dg~v~i 90 (314)
.|+-++. +++++++|...|+|.+-|.++.+.+.++..|.+. |..+.. .|+.|++|+. |..|+|
T Consensus 179 ~v~imR~--Nnr~lf~G~t~G~V~LrD~~s~~~iht~~aHs~s--iSDfDv----~GNlLitCG~S~R~~~l~~D~FvkV 250 (1118)
T KOG1275|consen 179 GVTIMRY--NNRNLFCGDTRGTVFLRDPNSFETIHTFDAHSGS--ISDFDV----QGNLLITCGYSMRRYNLAMDPFVKV 250 (1118)
T ss_pred ceEEEEe--cCcEEEeecccceEEeecCCcCceeeeeeccccc--eeeeec----cCCeEEEeecccccccccccchhhh
Confidence 3444444 5789999999999999999999999999999955 887776 4589999876 567899
Q ss_pred EeCCCCCCCCCCeeeeecceeeEEEeeeeeccccccccCCCCcceeeccCCceeeecCCCCCCceeccCCCceEEEeecC
Q 021291 91 WDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQ 170 (314)
Q Consensus 91 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 170 (314)
||++..+.+. .+.+...+. . +.|.|.-...++++.+
T Consensus 251 YDLRmmral~--PI~~~~~P~-f----------------------------------------lrf~Psl~t~~~V~S~- 286 (1118)
T KOG1275|consen 251 YDLRMMRALS--PIQFPYGPQ-F----------------------------------------LRFHPSLTTRLAVTSQ- 286 (1118)
T ss_pred hhhhhhhccC--CcccccCch-h----------------------------------------hhhcccccceEEEEec-
Confidence 9999876543 112211110 0 3455654444554443
Q ss_pred cCeEEEEecCCCc-eeeeecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEeecCCcEEEEEcc
Q 021291 171 LSEVEIWDLNTAE-RCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIR 239 (314)
Q Consensus 171 d~~i~vwd~~~~~-~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~ 239 (314)
.|...+-|..+.. +..... +..+....+.+.. ++++ |+ .++.|..+|.|.+|.-+
T Consensus 287 sGq~q~vd~~~lsNP~~~~~---------~v~p~~s~i~~fD-iSsn---~~-alafgd~~g~v~~wa~~ 342 (1118)
T KOG1275|consen 287 SGQFQFVDTATLSNPPAGVK---------MVNPNGSGISAFD-ISSN---GD-ALAFGDHEGHVNLWADR 342 (1118)
T ss_pred ccceeeccccccCCCcccee---------EEccCCCcceeEE-ecCC---Cc-eEEEecccCcEeeecCC
Confidence 4889999843221 111111 1112344577777 8887 55 89999999999999843
No 311
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.43 E-value=7.1e-05 Score=65.74 Aligned_cols=211 Identities=14% Similarity=0.191 Sum_probs=118.7
Q ss_pred EEccCCCEEEEecCCCeEEEEeCCCCeEEEEEeccCCcccEEEEEEcccCCCCeEEEeecCCe-----EEEEeCCCCCCC
Q 021291 25 CFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGT-----VKCWDIENGGLS 99 (314)
Q Consensus 25 ~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~-----v~iwd~~~~~~~ 99 (314)
+|++.+..++.|+.+|.|.+.+ ..-+.+..++.+... -|..+.... +..+|++.+.|+. |+|||++..+--
T Consensus 30 c~~s~~~~vvigt~~G~V~~Ln-~s~~~~~~fqa~~~s-iv~~L~~~~--~~~~L~sv~Ed~~~np~llkiw~lek~~~n 105 (933)
T KOG2114|consen 30 CCSSSTGSVVIGTADGRVVILN-SSFQLIRGFQAYEQS-IVQFLYILN--KQNFLFSVGEDEQGNPVLLKIWDLEKVDKN 105 (933)
T ss_pred EEcCCCceEEEeeccccEEEec-ccceeeehheecchh-hhhHhhccc--CceEEEEEeecCCCCceEEEEecccccCCC
Confidence 3567788999999999988887 334555788887743 233443333 4468888777654 999999764311
Q ss_pred CCCeeeeecceeeEEEeeeeeccccccccCCCCcceeeccCCceeeecCCCCCCceeccCCCceEEEeecCcCeEEEEec
Q 021291 100 SNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQLSEVEIWDL 179 (314)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~vwd~ 179 (314)
..|... ..+ .+.....+..... ...++++.+-+ .+++|-.+|.|..+.=
T Consensus 106 ~sP~c~-~~~-----ri~~~~np~~~~p-----------------------~s~l~Vs~~l~--~Iv~Gf~nG~V~~~~G 154 (933)
T KOG2114|consen 106 NSPQCL-YEH-----RIFTIKNPTNPSP-----------------------ASSLAVSEDLK--TIVCGFTNGLVICYKG 154 (933)
T ss_pred CCccee-eee-----eeeccCCCCCCCc-----------------------ceEEEEEcccc--EEEEEecCcEEEEEcC
Confidence 101110 000 0000000000000 00044555533 3347888999988842
Q ss_pred C---CCceeeeecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEeecCCcEEEEEccCCCCceEeeecCCcceE
Q 021291 180 N---TAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPVL 256 (314)
Q Consensus 180 ~---~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~h~~~v~ 256 (314)
. .......+ .| ....+++.+. |..+ +...+.++. -..|.+|.+......+..+..|...++
T Consensus 155 Di~RDrgsr~~~---------~~--~~~~pITgL~-~~~d---~~s~lFv~T-t~~V~~y~l~gr~p~~~~ld~~G~~ln 218 (933)
T KOG2114|consen 155 DILRDRGSRQDY---------SH--RGKEPITGLA-LRSD---GKSVLFVAT-TEQVMLYSLSGRTPSLKVLDNNGISLN 218 (933)
T ss_pred cchhccccceee---------ec--cCCCCceeeE-EecC---CceeEEEEe-cceeEEEEecCCCcceeeeccCCccce
Confidence 1 11111111 12 2366888887 8776 432333333 347999999852322455788888999
Q ss_pred EEEEeCCCCeEEEecCCCcEEEEecCCCeee
Q 021291 257 CLSIDESCNGGISGGADQKIVLYNLDHSTYV 287 (314)
Q Consensus 257 ~~~~~~~~~~l~s~s~dg~i~iw~~~~~~~~ 287 (314)
|..+++....++.++. ..+.+|+.+..+.-
T Consensus 219 Css~~~~t~qfIca~~-e~l~fY~sd~~~~c 248 (933)
T KOG2114|consen 219 CSSFSDGTYQFICAGS-EFLYFYDSDGRGPC 248 (933)
T ss_pred eeecCCCCccEEEecC-ceEEEEcCCCccee
Confidence 9999765554555543 35889988755443
No 312
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=98.43 E-value=0.00016 Score=66.07 Aligned_cols=241 Identities=11% Similarity=0.054 Sum_probs=127.9
Q ss_pred CceeEEEEccCCCEEEEecCCCeEEEEeCCCCeEEEEEeccCCcccEEEEEEcccCCCCeEEEeecCCeEEEEeCCCCCC
Q 021291 19 ASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGGL 98 (314)
Q Consensus 19 ~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~ 98 (314)
+.|.++.|..+.+.++.+..+|.|.+-|.++...... ..-. .+|.+++|+| |.+.++..+..++|.+-+-. -..
T Consensus 69 ~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~eiv-g~vd--~GI~aaswS~--Dee~l~liT~~~tll~mT~~-f~~ 142 (1265)
T KOG1920|consen 69 DEIVSVQFLADTNSICVITALGDIILVDPETLELEIV-GNVD--NGISAASWSP--DEELLALITGRQTLLFMTKD-FEP 142 (1265)
T ss_pred cceEEEEEecccceEEEEecCCcEEEEcccccceeee-eecc--CceEEEeecC--CCcEEEEEeCCcEEEEEecc-ccc
Confidence 5899999999998999999999999998776543222 1122 5599999999 99999988888887664431 111
Q ss_pred CCCCeeeeecceeeEEEeeeeeccccccccCCCCcce--e-eccCCceee-ecCCCCCC-ceeccCCCceEEE--eecCc
Q 021291 99 SSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDC--Y-EREVGETVD-TDSLCDSK-DDVPAEGPKYMAV--AGEQL 171 (314)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-~~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~--~g~~d 171 (314)
+.+ ..+.........+--.+......-..+..++. - .+...+... .....|.. ++|--||+++.+. ....+
T Consensus 143 i~E--~~L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~~fAVs~~~~~~~ 220 (1265)
T KOG1920|consen 143 IAE--KPLDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRGDGEYFAVSFVESETG 220 (1265)
T ss_pred hhc--cccccccccccccceecccccceeeecchhhhcccccccccccccchhhccCCceEEEccCCcEEEEEEEeccCC
Confidence 110 01100000000000000000000000000000 0 000000000 01111222 8899999865441 11123
Q ss_pred -CeEEEEecCCCceeeeecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEe---ecCCcEEEEEccCC--CCce
Q 021291 172 -SEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAG---YEDGSILVWDIRNP--GIPL 245 (314)
Q Consensus 172 -~~i~vwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g---~~dg~i~vwd~~~~--~~~~ 245 (314)
+.|++||.. +..- ... .+..+.-.++. |-|. |. .+++- ..|+.|.+|.-+-. +...
T Consensus 221 ~RkirV~drE-g~Ln-s~s-----------e~~~~l~~~Ls-WkPs---gs-~iA~iq~~~sd~~IvffErNGL~hg~f~ 282 (1265)
T KOG1920|consen 221 TRKIRVYDRE-GALN-STS-----------EPVEGLQHSLS-WKPS---GS-LIAAIQCKTSDSDIVFFERNGLRHGEFV 282 (1265)
T ss_pred ceeEEEeccc-chhh-ccc-----------Cccccccccee-ecCC---CC-eEeeeeecCCCCcEEEEecCCccccccc
Confidence 789999976 4321 111 11234445565 9997 44 56553 34567888875421 2222
Q ss_pred EeeecCCcceEEEEEeCCCCeEEE---ecCCCcEEEEecCCCe
Q 021291 246 TAMKVHLEPVLCLSIDESCNGGIS---GGADQKIVLYNLDHST 285 (314)
Q Consensus 246 ~~~~~h~~~v~~~~~~~~~~~l~s---~s~dg~i~iw~~~~~~ 285 (314)
..+.....+|..++|+.++..|+. ......|++|-+.+-.
T Consensus 283 l~~p~de~~ve~L~Wns~sdiLAv~~~~~e~~~v~lwt~~Nyh 325 (1265)
T KOG1920|consen 283 LPFPLDEKEVEELAWNSNSDILAVVTSNLENSLVQLWTTGNYH 325 (1265)
T ss_pred cCCcccccchheeeecCCCCceeeeecccccceEEEEEecCeE
Confidence 223333445999999988888876 4444459999887654
No 313
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=98.42 E-value=0.00016 Score=55.56 Aligned_cols=74 Identities=8% Similarity=0.090 Sum_probs=50.6
Q ss_pred eeEEEEccCCCEEEEecCCCeEEEEeCCCCeEEEEEeccC-----CcccEEEEEEcccCC----CCeEEEeecCCeEEEE
Q 021291 21 VTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHS-----AAHGIVSVATGPSIG----LNKVISQGRDGTVKCW 91 (314)
Q Consensus 21 v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~-----~~~~v~~~~~~~~~~----~~~l~s~~~dg~v~iw 91 (314)
=+-++||||+.+||.+...|+|++||+.. ..+..+.... -...|..|.|.+... ...|+.-..+|.++-|
T Consensus 46 WRkl~WSpD~tlLa~a~S~G~i~vfdl~g-~~lf~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy 124 (282)
T PF15492_consen 46 WRKLAWSPDCTLLAYAESTGTIRVFDLMG-SELFVIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSY 124 (282)
T ss_pred heEEEECCCCcEEEEEcCCCeEEEEeccc-ceeEEcCcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeE
Confidence 35699999999999999999999999875 3333433211 113477787765211 1257777778888877
Q ss_pred eCCC
Q 021291 92 DIEN 95 (314)
Q Consensus 92 d~~~ 95 (314)
-+..
T Consensus 125 ~vs~ 128 (282)
T PF15492_consen 125 LVSV 128 (282)
T ss_pred EEEc
Confidence 7643
No 314
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.41 E-value=1.2e-05 Score=65.21 Aligned_cols=226 Identities=14% Similarity=0.065 Sum_probs=137.6
Q ss_pred CceEEecCCCCceeEEEEccCCCEEEEecC-CCeEEEEeCCCCeEEEEEeccCCcccEEEEEEcccCCCC-eEE-EeecC
Q 021291 9 DPVAVLRGHRASVTDVCFHQTKPILFAGTT-GGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLN-KVI-SQGRD 85 (314)
Q Consensus 9 ~~~~~l~~h~~~v~~~~~~~~~~~l~s~~~-dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~l~-s~~~d 85 (314)
+.++.++.|...|.+++.+-++.++.|++. |..++++|+++-..+..++...-+..+ +.-.++. +.. .++ +.-.+
T Consensus 44 EfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvEn~DminmiKL~~lPg~a-~wv~skG-d~~s~IAVs~~~s 121 (558)
T KOG0882|consen 44 EFVKHFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFDVENFDMINMIKLVDLPGFA-EWVTSKG-DKISLIAVSLFKS 121 (558)
T ss_pred eehhhhHHHHHHHHhhhccccceeEeeccCcccceeEEEeeccchhhhcccccCCCce-EEecCCC-CeeeeEEeecccC
Confidence 456777889999999999999999999777 999999999886665444433222212 2222331 111 233 34457
Q ss_pred CeEEEEeCCCCCCCCCCeeeeecceeeEEEeeeeeccccccccCCCCcceeeccCCceeeecCCCCCCceeccCCCceEE
Q 021291 86 GTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMA 165 (314)
Q Consensus 86 g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (314)
+.+.++|-....+..-....++..+.... .+.+.++..+
T Consensus 122 g~i~VvD~~~d~~q~~~fkklH~sPV~~i----------------------------------------~y~qa~Ds~v- 160 (558)
T KOG0882|consen 122 GKIFVVDGFGDFCQDGYFKKLHFSPVKKI----------------------------------------RYNQAGDSAV- 160 (558)
T ss_pred CCcEEECCcCCcCccceecccccCceEEE----------------------------------------Eeecccccee-
Confidence 89999998766543211112222222222 2444455333
Q ss_pred EeecCcCeEEEEecCC-Cc-----eeeeecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEeecCCcEEEEEcc
Q 021291 166 VAGEQLSEVEIWDLNT-AE-----RCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIR 239 (314)
Q Consensus 166 ~~g~~d~~i~vwd~~~-~~-----~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~ 239 (314)
+....|.|.-|.... .+ ....++. .....+. ........++. |+|+ |. .+.+-+.|..|++++.+
T Consensus 161 -SiD~~gmVEyWs~e~~~qfPr~~l~~~~K~--eTdLy~f-~K~Kt~pts~E-fsp~---g~-qistl~~DrkVR~F~~K 231 (558)
T KOG0882|consen 161 -SIDISGMVEYWSAEGPFQFPRTNLNFELKH--ETDLYGF-PKAKTEPTSFE-FSPD---GA-QISTLNPDRKVRGFVFK 231 (558)
T ss_pred -eccccceeEeecCCCcccCccccccccccc--cchhhcc-cccccCccceE-Eccc---cC-cccccCcccEEEEEEec
Confidence 555568889998762 11 1111110 0000011 11344566776 9998 44 78888899999999998
Q ss_pred CCCCceEee--------------------------------ecCCc-ceEEEEEeCCCCeEEEecCCCcEEEEecCCCee
Q 021291 240 NPGIPLTAM--------------------------------KVHLE-PVLCLSIDESCNGGISGGADQKIVLYNLDHSTY 286 (314)
Q Consensus 240 ~~~~~~~~~--------------------------------~~h~~-~v~~~~~~~~~~~l~s~s~dg~i~iw~~~~~~~ 286 (314)
+ +..++.+ ..|.. .-+.+.|+..+++|+-|+.=| |++.++.+++.
T Consensus 232 t-GklvqeiDE~~t~~~~q~ks~y~l~~VelgRRmaverelek~~~~~~~~~~fdes~~flly~t~~g-ikvin~~tn~v 309 (558)
T KOG0882|consen 232 T-GKLVQEIDEVLTDAQYQPKSPYGLMHVELGRRMAVERELEKHGSTVGTNAVFDESGNFLLYGTILG-IKVINLDTNTV 309 (558)
T ss_pred c-chhhhhhhccchhhhhccccccccceeehhhhhhHHhhHhhhcCcccceeEEcCCCCEEEeeccee-EEEEEeecCeE
Confidence 7 5543332 12222 345678899999999888776 89999998876
Q ss_pred eE
Q 021291 287 VL 288 (314)
Q Consensus 287 ~~ 288 (314)
+.
T Consensus 310 ~r 311 (558)
T KOG0882|consen 310 VR 311 (558)
T ss_pred EE
Confidence 54
No 315
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=98.37 E-value=0.00058 Score=54.05 Aligned_cols=56 Identities=16% Similarity=0.234 Sum_probs=43.0
Q ss_pred EEEccCCCEEEEe-----cCCCeEEEEeCC-CCeEEEEEeccCCcccEEEEEEcccCCCCeEEEee
Q 021291 24 VCFHQTKPILFAG-----TTGGELRIWDTV-QHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQG 83 (314)
Q Consensus 24 ~~~~~~~~~l~s~-----~~dg~v~iwd~~-~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~ 83 (314)
-.|++||++|++. +..|.|-|||.. +-+.+..+..+. -.-..+.+.| |++.|+.+-
T Consensus 56 g~fs~dG~~LytTEnd~~~g~G~IgVyd~~~~~~ri~E~~s~G--IGPHel~l~p--DG~tLvVAN 117 (305)
T PF07433_consen 56 GVFSPDGRLLYTTENDYETGRGVIGVYDAARGYRRIGEFPSHG--IGPHELLLMP--DGETLVVAN 117 (305)
T ss_pred EEEcCCCCEEEEeccccCCCcEEEEEEECcCCcEEEeEecCCC--cChhhEEEcC--CCCEEEEEc
Confidence 5799999999885 446899999998 567777777765 2357788999 887777653
No 316
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=98.35 E-value=2e-07 Score=78.47 Aligned_cols=204 Identities=18% Similarity=0.196 Sum_probs=118.3
Q ss_pred CCceeEEEEccC--CCEEEEecCCCeEEEEeCCCCeEE--EEEeccCCcccEEEEEEcccCCCCeEEEeec----CCeEE
Q 021291 18 RASVTDVCFHQT--KPILFAGTTGGELRIWDTVQHRTV--SSSWVHSAAHGIVSVATGPSIGLNKVISQGR----DGTVK 89 (314)
Q Consensus 18 ~~~v~~~~~~~~--~~~l~s~~~dg~v~iwd~~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~----dg~v~ 89 (314)
...+.|+++.-+ ..+++.|..+|.|.+-..+...-- ....++. .+.++++|++- |.+.|+.|-. |-.+.
T Consensus 56 tqy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdSs~E~tp~~a--r~Ct~lAwneL-Dtn~LAagldkhrnds~~~ 132 (783)
T KOG1008|consen 56 TQYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDSSAEVTPGYA--RPCTSLAWNEL-DTNHLAAGLDKHRNDSSLK 132 (783)
T ss_pred CCCceeehhhcCCchhhhhhccccCceEEeecCCcccccceeccccc--ccccccccccc-cHHHHHhhhhhhcccCCcc
Confidence 345778887663 347889999999999887653222 2233344 55999999985 5567777643 56799
Q ss_pred EEeCCCCCCCCCCeeeeecceeeEEEeeeeeccccccccCCCCcceeeccCCceeeecCCCCCCceeccCCCceEEEeec
Q 021291 90 CWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGE 169 (314)
Q Consensus 90 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 169 (314)
|||+.++-...+....+... .+.+...++|..+.+ +++ +|.
T Consensus 133 Iwdi~s~ltvPke~~~fs~~-------------------------------------~l~gqns~cwlrd~k-lvl-aGm 173 (783)
T KOG1008|consen 133 IWDINSLLTVPKESPLFSSS-------------------------------------TLDGQNSVCWLRDTK-LVL-AGM 173 (783)
T ss_pred ceecccccCCCccccccccc-------------------------------------cccCccccccccCcc-hhh-ccc
Confidence 99998863211000001000 000111145664443 333 677
Q ss_pred CcCeEEEEecCCCc-eeeeecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEeecCCcEEEEE-ccCCCCceEe
Q 021291 170 QLSEVEIWDLNTAE-RCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWD-IRNPGIPLTA 247 (314)
Q Consensus 170 ~d~~i~vwd~~~~~-~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd-~~~~~~~~~~ 247 (314)
..+.+.++|++... ....+.. ..| .+.. +..|+|+ ++++-. ||.|.+|| .++...++..
T Consensus 174 ~sr~~~ifdlRqs~~~~~svnT------k~v----qG~t--Vdp~~~n------Y~cs~~-dg~iAiwD~~rnienpl~~ 234 (783)
T KOG1008|consen 174 TSRSVHIFDLRQSLDSVSSVNT------KYV----QGIT--VDPFSPN------YFCSNS-DGDIAIWDTYRNIENPLQI 234 (783)
T ss_pred ccchhhhhhhhhhhhhhhhhhh------hhc----ccce--ecCCCCC------ceeccc-cCceeeccchhhhccHHHH
Confidence 67899999998432 2222210 011 2221 1135554 666655 99999999 5554566655
Q ss_pred eecCCc----ceEEEEEeCCCC-eEEEec-CCCcEEEEecC
Q 021291 248 MKVHLE----PVLCLSIDESCN-GGISGG-ADQKIVLYNLD 282 (314)
Q Consensus 248 ~~~h~~----~v~~~~~~~~~~-~l~s~s-~dg~i~iw~~~ 282 (314)
+..... .+..++|.|... .+++.+ ..++|+++++.
T Consensus 235 i~~~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrlydi~ 275 (783)
T KOG1008|consen 235 ILRNENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLYDIC 275 (783)
T ss_pred HhhCCCCcccceeeEEeccCCcchhhhhccCcceEEEeccc
Confidence 543333 389999976432 244444 45789999875
No 317
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.35 E-value=6.5e-06 Score=71.39 Aligned_cols=152 Identities=13% Similarity=0.078 Sum_probs=106.7
Q ss_pred ccEEEEEEcccCCCCeEEEeecCCeEEEEeCCCCCCCCCCeeeeecceeeEEEeeeeeccccccccCCCCcceeeccCCc
Q 021291 63 HGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGE 142 (314)
Q Consensus 63 ~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 142 (314)
..+.|++++. ++|+-|..+|.|++.+...... . .+...+
T Consensus 40 D~is~~av~~----~~~~~GtH~g~v~~~~~~~~~~-~----~~~~s~-------------------------------- 78 (846)
T KOG2066|consen 40 DAISCCAVHD----KFFALGTHRGAVYLTTCQGNPK-T----NFDHSS-------------------------------- 78 (846)
T ss_pred hHHHHHHhhc----ceeeeccccceEEEEecCCccc-c----cccccc--------------------------------
Confidence 3477888865 8999999999999999875421 0 000000
Q ss_pred eeeecCCCCCCceeccCCCceEEEeecCcCeEEEEecCCCceeeeecccccCCCCCcCCCCCceeeeEEEecCC--CCCC
Q 021291 143 TVDTDSLCDSKDDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPS--KSQG 220 (314)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~--~~~g 220 (314)
-..+|+++. +++.||+|.|-.+-+.+...++.. ..++-+++ ++|+ ....
T Consensus 79 -------------~~~~Gey~a--sCS~DGkv~I~sl~~~~~~~~~df-------------~rpiksia-l~Pd~~~~~s 129 (846)
T KOG2066|consen 79 -------------SILEGEYVA--SCSDDGKVVIGSLFTDDEITQYDF-------------KRPIKSIA-LHPDFSRQQS 129 (846)
T ss_pred -------------cccCCceEE--EecCCCcEEEeeccCCccceeEec-------------CCcceeEE-eccchhhhhh
Confidence 013456543 788899999999988887766652 33677776 9997 2222
Q ss_pred ceEEEEeecCCcEEEEEccCCCCceE-eeecCCcceEEEEEeCCCCeEEEecCCCcEEEEecCCCeeeEe
Q 021291 221 FVNVLAGYEDGSILVWDIRNPGIPLT-AMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTYVLF 289 (314)
Q Consensus 221 ~~~l~~g~~dg~i~vwd~~~~~~~~~-~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~iw~~~~~~~~~~ 289 (314)
+ .+++|+..| +.++.-+-.+.... .+..-.++|.++.|..+ ++|=++.+| |+|||+.+++.+..
T Consensus 130 k-~fv~GG~ag-lvL~er~wlgnk~~v~l~~~eG~I~~i~W~g~--lIAWand~G-v~vyd~~~~~~l~~ 194 (846)
T KOG2066|consen 130 K-QFVSGGMAG-LVLSERNWLGNKDSVVLSEGEGPIHSIKWRGN--LIAWANDDG-VKVYDTPTRQRLTN 194 (846)
T ss_pred h-heeecCcce-EEEehhhhhcCccceeeecCccceEEEEecCc--EEEEecCCC-cEEEeccccceeec
Confidence 3 689999988 88877553333222 35555789999999877 888888777 99999999987764
No 318
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=98.34 E-value=1.6e-06 Score=45.97 Aligned_cols=39 Identities=28% Similarity=0.627 Sum_probs=35.6
Q ss_pred CCceEEecCCCCceeEEEEccCCCEEEEecCCCeEEEEe
Q 021291 8 PDPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWD 46 (314)
Q Consensus 8 ~~~~~~l~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd 46 (314)
.+++..+.+|...|.+++|++++.++++++.|+.+++|+
T Consensus 2 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 2 GELLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred cEEEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 356788889999999999999889999999999999996
No 319
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=98.31 E-value=0.00038 Score=58.94 Aligned_cols=199 Identities=12% Similarity=0.096 Sum_probs=107.6
Q ss_pred CCCEEEEecCCCeEEEEeCCCCeEEEEEeccCCcccEE-----EEEEcccCCCCeEEEeecCCeEEEEeCCCCCCCCCCe
Q 021291 29 TKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIV-----SVATGPSIGLNKVISQGRDGTVKCWDIENGGLSSNPS 103 (314)
Q Consensus 29 ~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~-----~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~ 103 (314)
.+..+++++.+|.|.-+|.++|+.+............. .+.-.|..++..++.++.+|.|..+|.++++..++
T Consensus 68 ~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~v~~~~v~v~~~~g~l~ald~~tG~~~W~-- 145 (394)
T PRK11138 68 AYNKVYAADRAGLVKALDADTGKEIWSVDLSEKDGWFSKNKSALLSGGVTVAGGKVYIGSEKGQVYALNAEDGEVAWQ-- 145 (394)
T ss_pred ECCEEEEECCCCeEEEEECCCCcEeeEEcCCCcccccccccccccccccEEECCEEEEEcCCCEEEEEECCCCCCccc--
Confidence 45678888899999999999999887765432100000 00111111346777888899999999999988662
Q ss_pred eeeecceeeEEEeeeeeccccccccCCCCcceeeccCCceeeecCCCCCCceeccCCCceEEEeecCcCeEEEEecCCCc
Q 021291 104 LTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQLSEVEIWDLNTAE 183 (314)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~vwd~~~~~ 183 (314)
...... ... ++ .+ . +..+++ +..++.+.-+|.++++
T Consensus 146 ~~~~~~--~~s--sP------------------------------------~v-~-~~~v~v--~~~~g~l~ald~~tG~ 181 (394)
T PRK11138 146 TKVAGE--ALS--RP------------------------------------VV-S-DGLVLV--HTSNGMLQALNESDGA 181 (394)
T ss_pred ccCCCc--eec--CC------------------------------------EE-E-CCEEEE--ECCCCEEEEEEccCCC
Confidence 111110 000 00 01 1 233443 4447899999999999
Q ss_pred eeeeecccccCCCCCcCC-CCCceeeeEEEecCCCCCCceEEEEeecCCcEEEEEccCCCCceEeeecCCc----c---e
Q 021291 184 RCTRLHQNSCGGSPNFSS-KGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHLE----P---V 255 (314)
Q Consensus 184 ~~~~~~~~~~~~~~~h~~-~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~h~~----~---v 255 (314)
.+-.+... ... ...+.. +.. ... + .++.+..+|.+..+|..+ ++.+........ . .
T Consensus 182 ~~W~~~~~-------~~~~~~~~~~-sP~-v~~----~--~v~~~~~~g~v~a~d~~~-G~~~W~~~~~~~~~~~~~~~~ 245 (394)
T PRK11138 182 VKWTVNLD-------VPSLTLRGES-APA-TAF----G--GAIVGGDNGRVSAVLMEQ-GQLIWQQRISQPTGATEIDRL 245 (394)
T ss_pred EeeeecCC-------CCcccccCCC-CCE-EEC----C--EEEEEcCCCEEEEEEccC-ChhhheeccccCCCccchhcc
Confidence 88776521 000 000000 000 111 2 466677788888888877 554433221000 0 0
Q ss_pred EEEEEeC--CCCeEEEecCCCcEEEEecCCCeeeEe
Q 021291 256 LCLSIDE--SCNGGISGGADQKIVLYNLDHSTYVLF 289 (314)
Q Consensus 256 ~~~~~~~--~~~~l~s~s~dg~i~iw~~~~~~~~~~ 289 (314)
..+.-+| .+..++.++.+|.+..+|..+++.++.
T Consensus 246 ~~~~~sP~v~~~~vy~~~~~g~l~ald~~tG~~~W~ 281 (394)
T PRK11138 246 VDVDTTPVVVGGVVYALAYNGNLVALDLRSGQIVWK 281 (394)
T ss_pred cccCCCcEEECCEEEEEEcCCeEEEEECCCCCEEEe
Confidence 0000011 122455555677777777777766654
No 320
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=98.30 E-value=2.7e-05 Score=67.57 Aligned_cols=167 Identities=11% Similarity=0.135 Sum_probs=114.4
Q ss_pred EEEEEEcccCCCCeEEEeecCCeEEEEeCCCCCCCCCCeeeeecceeeEEEeeeeeccccccccCCCCcceeeccCCcee
Q 021291 65 IVSVATGPSIGLNKVISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETV 144 (314)
Q Consensus 65 v~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 144 (314)
-.++.|+| . .+|+-|+. ..|.+-|..+-+.++ .++.+........+.+...+..
T Consensus 18 ~~A~Dw~~--~-GLiAygsh-slV~VVDs~s~q~iq--sie~h~s~V~~VrWap~~~p~~-------------------- 71 (1062)
T KOG1912|consen 18 RNAADWSP--S-GLIAYGSH-SLVSVVDSRSLQLIQ--SIELHQSAVTSVRWAPAPSPRD-------------------- 71 (1062)
T ss_pred ccccccCc--c-ceEEEecC-ceEEEEehhhhhhhh--ccccCccceeEEEeccCCCchh--------------------
Confidence 56788998 4 67777775 478999998887766 4455554445454444433221
Q ss_pred eecCCCCCCceeccCCCceEEEeecCcCeEEEEecCCCceeeeecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEE
Q 021291 145 DTDSLCDSKDDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNV 224 (314)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l 224 (314)
-++|....++++++...|.|.+||...+..+..+. .|.+ .+..++ |-|...+.+.++
T Consensus 72 ----------llS~~~~~lliAsaD~~GrIil~d~~~~s~~~~l~--------~~~~----~~qdl~-W~~~rd~Srd~L 128 (1062)
T KOG1912|consen 72 ----------LLSPSSSQLLIASADISGRIILVDFVLASVINWLS--------HSND----SVQDLC-WVPARDDSRDVL 128 (1062)
T ss_pred ----------ccCccccceeEEeccccCcEEEEEehhhhhhhhhc--------CCCc----chhhee-eeeccCcchhee
Confidence 25555455667788889999999999888777776 3433 344554 766554454477
Q ss_pred EEeecCCcEEEEEccCCCCceEeeecCCcceEEEEEeC-CCCeEEEecCCCcEEEEec
Q 021291 225 LAGYEDGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDE-SCNGGISGGADQKIVLYNL 281 (314)
Q Consensus 225 ~~g~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~s~s~dg~i~iw~~ 281 (314)
++-.....|.+|+..+ |+.+...........++.++| +.+.+..-+..|.+.+-+.
T Consensus 129 laIh~ss~lvLwntdt-G~k~Wk~~ys~~iLs~f~~DPfd~rh~~~l~s~g~vl~~~~ 185 (1062)
T KOG1912|consen 129 LAIHGSSTLVLWNTDT-GEKFWKYDYSHEILSCFRVDPFDSRHFCVLGSKGFVLSCKD 185 (1062)
T ss_pred EEecCCcEEEEEEccC-CceeeccccCCcceeeeeeCCCCcceEEEEccCceEEEEec
Confidence 7777788999999998 777777776666777788877 4445555566777776654
No 321
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=98.30 E-value=0.00094 Score=52.55 Aligned_cols=182 Identities=14% Similarity=0.152 Sum_probs=106.4
Q ss_pred eeEEEEc-cCCCEEEEecCCCeEEEEeCCCCeEEEEEec--cC-CcccEEEEEEcccCCCCeEEEeecC--------CeE
Q 021291 21 VTDVCFH-QTKPILFAGTTGGELRIWDTVQHRTVSSSWV--HS-AAHGIVSVATGPSIGLNKVISQGRD--------GTV 88 (314)
Q Consensus 21 v~~~~~~-~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~--~~-~~~~v~~~~~~~~~~~~~l~s~~~d--------g~v 88 (314)
...+++. +++.+ +.+..++ +.++|..+++....... .. .......+++.| +|++.++.... |.|
T Consensus 42 ~~G~~~~~~~g~l-~v~~~~~-~~~~d~~~g~~~~~~~~~~~~~~~~~~ND~~vd~--~G~ly~t~~~~~~~~~~~~g~v 117 (246)
T PF08450_consen 42 PNGMAFDRPDGRL-YVADSGG-IAVVDPDTGKVTVLADLPDGGVPFNRPNDVAVDP--DGNLYVTDSGGGGASGIDPGSV 117 (246)
T ss_dssp EEEEEEECTTSEE-EEEETTC-EEEEETTTTEEEEEEEEETTCSCTEEEEEEEE-T--TS-EEEEEECCBCTTCGGSEEE
T ss_pred CceEEEEccCCEE-EEEEcCc-eEEEecCCCcEEEEeeccCCCcccCCCceEEEcC--CCCEEEEecCCCccccccccce
Confidence 5667777 56544 4455554 56669888865444433 11 235688999999 98877765543 446
Q ss_pred EEEeCCCCCCCCCCeeeeecceeeEEEeeeeeccccccccCCCCcceeeccCCceeeecCCCCCCceeccCCCceEEEee
Q 021291 89 KCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAG 168 (314)
Q Consensus 89 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 168 (314)
..++.. ++... . ....... .+ ++|+|+++.+++ +-
T Consensus 118 ~~~~~~-~~~~~--~--~~~~~~p------NG---------------------------------i~~s~dg~~lyv-~d 152 (246)
T PF08450_consen 118 YRIDPD-GKVTV--V--ADGLGFP------NG---------------------------------IAFSPDGKTLYV-AD 152 (246)
T ss_dssp EEEETT-SEEEE--E--EEEESSE------EE---------------------------------EEEETTSSEEEE-EE
T ss_pred EEECCC-CeEEE--E--ecCcccc------cc---------------------------------eEECCcchheee-cc
Confidence 666655 32110 0 0000000 00 679999987765 55
Q ss_pred cCcCeEEEEecCCCce----eeeecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEeecCCcEEEEEccCCCCc
Q 021291 169 EQLSEVEIWDLNTAER----CTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIP 244 (314)
Q Consensus 169 ~~d~~i~vwd~~~~~~----~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~ 244 (314)
+..+.|..|++..... ...+. +.....+..-.++ +..+ |+ +.++....+.|.++|.+ ++.
T Consensus 153 s~~~~i~~~~~~~~~~~~~~~~~~~---------~~~~~~g~pDG~~-vD~~---G~-l~va~~~~~~I~~~~p~--G~~ 216 (246)
T PF08450_consen 153 SFNGRIWRFDLDADGGELSNRRVFI---------DFPGGPGYPDGLA-VDSD---GN-LWVADWGGGRIVVFDPD--GKL 216 (246)
T ss_dssp TTTTEEEEEEEETTTCCEEEEEEEE---------E-SSSSCEEEEEE-EBTT---S--EEEEEETTTEEEEEETT--SCE
T ss_pred cccceeEEEeccccccceeeeeeEE---------EcCCCCcCCCcce-EcCC---CC-EEEEEcCCCEEEEECCC--ccE
Confidence 5678899999863222 11221 1011123355555 7766 65 66666778899999987 778
Q ss_pred eEeeecCCcceEEEEEe-CCCCeE
Q 021291 245 LTAMKVHLEPVLCLSID-ESCNGG 267 (314)
Q Consensus 245 ~~~~~~h~~~v~~~~~~-~~~~~l 267 (314)
+..+......+++++|. ++...|
T Consensus 217 ~~~i~~p~~~~t~~~fgg~~~~~L 240 (246)
T PF08450_consen 217 LREIELPVPRPTNCAFGGPDGKTL 240 (246)
T ss_dssp EEEEE-SSSSEEEEEEESTTSSEE
T ss_pred EEEEcCCCCCEEEEEEECCCCCEE
Confidence 88777665689999994 454444
No 322
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=98.29 E-value=0.00092 Score=51.96 Aligned_cols=218 Identities=11% Similarity=0.067 Sum_probs=110.9
Q ss_pred EEecCCCCceeEEEEccCC-CEEEEecCCCeEEEEeCCCCeEEEEEeccCCcccEEEEEEcccCCCCeEEEeecCCeEEE
Q 021291 12 AVLRGHRASVTDVCFHQTK-PILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKC 90 (314)
Q Consensus 12 ~~l~~h~~~v~~~~~~~~~-~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~v~i 90 (314)
+.+.+-.+.+..++|+|+. .++++....+.|...+. +|+.++.+..... .-.-.|++.. ++.++++--.++.+.+
T Consensus 15 ~~l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~-~G~vlr~i~l~g~-~D~EgI~y~g--~~~~vl~~Er~~~L~~ 90 (248)
T PF06977_consen 15 KPLPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSL-DGKVLRRIPLDGF-GDYEGITYLG--NGRYVLSEERDQRLYI 90 (248)
T ss_dssp EE-TT--S-EEEEEEETTTTEEEEEETTTTEEEEEET-T--EEEEEE-SS--SSEEEEEE-S--TTEEEEEETTTTEEEE
T ss_pred eECCCccCCccccEEcCCCCeEEEEECCCCEEEEEcC-CCCEEEEEeCCCC-CCceeEEEEC--CCEEEEEEcCCCcEEE
Confidence 4566777789999999964 46677778889988886 5788887765431 2378888887 7666666656899999
Q ss_pred EeCCCCCCCCCCeeeeecceeeEEEeeeeeccccccccCCCCcceeeccCCceeeecCCCCCCceeccCCCceEEEeecC
Q 021291 91 WDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQ 170 (314)
Q Consensus 91 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 170 (314)
+++....... .... ...+....... .-.+-.+++|.+.++.++++--
T Consensus 91 ~~~~~~~~~~----~~~~----~~~~~l~~~~~-----------------------~N~G~EGla~D~~~~~L~v~kE-- 137 (248)
T PF06977_consen 91 FTIDDDTTSL----DRAD----VQKISLGFPNK-----------------------GNKGFEGLAYDPKTNRLFVAKE-- 137 (248)
T ss_dssp EEE----TT------EEE----EEEEE---S--------------------------SS--EEEEEETTTTEEEEEEE--
T ss_pred EEEecccccc----chhh----ceEEecccccC-----------------------CCcceEEEEEcCCCCEEEEEeC--
Confidence 9985532211 1000 01111100000 0000011889999888886532
Q ss_pred cCeEEEEecCC---CceeeeecccccCCCCCcC--CCCCceeeeEEEecCCCCCCceEEEEeecCCcEEEEEccCCCCce
Q 021291 171 LSEVEIWDLNT---AERCTRLHQNSCGGSPNFS--SKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPL 245 (314)
Q Consensus 171 d~~i~vwd~~~---~~~~~~~~~~~~~~~~~h~--~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~ 245 (314)
..-..+|.++. ...+...... .+. .....-..++. |+|. .|. +++....+..|..+|.. ++++
T Consensus 138 ~~P~~l~~~~~~~~~~~~~~~~~~------~~~~~~~~~~d~S~l~-~~p~--t~~-lliLS~es~~l~~~d~~--G~~~ 205 (248)
T PF06977_consen 138 RKPKRLYEVNGFPGGFDLFVSDDQ------DLDDDKLFVRDLSGLS-YDPR--TGH-LLILSDESRLLLELDRQ--GRVV 205 (248)
T ss_dssp SSSEEEEEEESTT-SS--EEEE-H------HHH-HT--SS---EEE-EETT--TTE-EEEEETTTTEEEEE-TT----EE
T ss_pred CCChhhEEEccccCccceeecccc------ccccccceeccccceE-EcCC--CCe-EEEEECCCCeEEEECCC--CCEE
Confidence 33455555543 1111111100 010 00122356666 8887 355 77778888999999954 7776
Q ss_pred EeeecCC---------cceEEEEEeCCCCeEEEecCCCcEEEE
Q 021291 246 TAMKVHL---------EPVLCLSIDESCNGGISGGADQKIVLY 279 (314)
Q Consensus 246 ~~~~~h~---------~~v~~~~~~~~~~~l~s~s~dg~i~iw 279 (314)
..+.-.. ...-.|+|+++|.+.++ |.-+..++|
T Consensus 206 ~~~~L~~g~~gl~~~~~QpEGIa~d~~G~LYIv-sEpNlfy~f 247 (248)
T PF06977_consen 206 SSLSLDRGFHGLSKDIPQPEGIAFDPDGNLYIV-SEPNLFYRF 247 (248)
T ss_dssp EEEE-STTGGG-SS---SEEEEEE-TT--EEEE-ETTTEEEEE
T ss_pred EEEEeCCcccCcccccCCccEEEECCCCCEEEE-cCCceEEEe
Confidence 6655222 24678999999975554 455555544
No 323
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.27 E-value=1.2e-06 Score=76.82 Aligned_cols=218 Identities=11% Similarity=0.151 Sum_probs=123.2
Q ss_pred eEEEEEeccCCcccEEEEEEcccCCCCeEEEeecCCeEEEEeCCCCCCCCCCeeeeecceeeEEEeeeeeccccccccCC
Q 021291 51 RTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQAN 130 (314)
Q Consensus 51 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (314)
+..++++.+. ..-+|++|+- +.++|+.|+..|.|+++++.+|.... ....+........-+..++.........
T Consensus 1092 r~w~~frd~~--~~fTc~afs~--~~~hL~vG~~~Geik~~nv~sG~~e~--s~ncH~SavT~vePs~dgs~~Ltsss~S 1165 (1516)
T KOG1832|consen 1092 RSWRSFRDET--ALFTCIAFSG--GTNHLAVGSHAGEIKIFNVSSGSMEE--SVNCHQSAVTLVEPSVDGSTQLTSSSSS 1165 (1516)
T ss_pred ccchhhhccc--cceeeEEeec--CCceEEeeeccceEEEEEccCccccc--cccccccccccccccCCcceeeeecccc
Confidence 3445566666 5599999999 88999999999999999999986533 2222222221111111111111111111
Q ss_pred -CCcceeeccCCceeeecCCCCCCceeccCCCceEEEeecCcCeEEEEecCCCceeeeecccccCCCCCcCCCCCceeee
Q 021291 131 -EPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMA 209 (314)
Q Consensus 131 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~ 209 (314)
-....|+..........+.+...+.|+..-..-++ |.......+||++++..+.++-. +... ...-..
T Consensus 1166 ~PlsaLW~~~s~~~~~Hsf~ed~~vkFsn~~q~r~~--gt~~d~a~~YDvqT~~~l~tylt-------~~~~--~~y~~n 1234 (1516)
T KOG1832|consen 1166 SPLSALWDASSTGGPRHSFDEDKAVKFSNSLQFRAL--GTEADDALLYDVQTCSPLQTYLT-------DTVT--SSYSNN 1234 (1516)
T ss_pred CchHHHhccccccCccccccccceeehhhhHHHHHh--cccccceEEEecccCcHHHHhcC-------cchh--hhhhcc
Confidence 12345555443333334444333667655433332 44345789999999988777431 1111 111112
Q ss_pred EEEecCCCCCCceEEEEeecCCcEEEEEccCCCCceEeeecCCcceEEEEEeCCCCeEEEecCCCcEEEEecCCCeeeEe
Q 021291 210 VQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTYVLF 289 (314)
Q Consensus 210 ~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~iw~~~~~~~~~~ 289 (314)
++.|+|++ . +++ .|| .+||.+. .+.++.+...+..+ .=.|+|+|..++.-+ .|||+++-+.+..
T Consensus 1235 ~a~FsP~D---~-LIl---ndG--vLWDvR~-~~aIh~FD~ft~~~-~G~FHP~g~eVIINS-----EIwD~RTF~lLh~ 1298 (1516)
T KOG1832|consen 1235 LAHFSPCD---T-LIL---NDG--VLWDVRI-PEAIHRFDQFTDYG-GGGFHPSGNEVIINS-----EIWDMRTFKLLHS 1298 (1516)
T ss_pred ccccCCCc---c-eEe---eCc--eeeeecc-HHHHhhhhhheecc-cccccCCCceEEeec-----hhhhhHHHHHHhc
Confidence 22499983 2 343 344 3799998 57777776555332 235899999888765 4799987765543
Q ss_pred -----eeeeeecCCCce
Q 021291 290 -----GIGFVCDQEGNK 301 (314)
Q Consensus 290 -----~~~~~~~~~~~~ 301 (314)
....++...|..
T Consensus 1299 VP~Ldqc~VtFNstG~V 1315 (1516)
T KOG1832|consen 1299 VPSLDQCAVTFNSTGDV 1315 (1516)
T ss_pred CccccceEEEeccCccc
Confidence 234455555543
No 324
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=98.22 E-value=0.0011 Score=55.60 Aligned_cols=216 Identities=10% Similarity=0.058 Sum_probs=111.2
Q ss_pred ceeEEEEccCCCEEEEecCCCeEEEEeCCCCeEE-------------------------------------------EEE
Q 021291 20 SVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTV-------------------------------------------SSS 56 (314)
Q Consensus 20 ~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~-------------------------------------------~~~ 56 (314)
.|+.+.|+++..-|+.|...|.|.||.....+.. ..+
T Consensus 3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l~ 82 (395)
T PF08596_consen 3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTLL 82 (395)
T ss_dssp -EEEEEEETTTTEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEEE
T ss_pred eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhhe
Confidence 5889999998889999999999999975432111 011
Q ss_pred eccCCcccEEEEEEcccCCCCeEEEeecCCeEEEEeCCCCCCCCCCeeeeecce----------eeEEEeeeeecccccc
Q 021291 57 WVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGGLSSNPSLTIKTNS----------YHFCKLSLVKEPYANA 126 (314)
Q Consensus 57 ~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~ 126 (314)
.... ++|++++.+. -.+++.|..+|.+.|.|++....+- ...... .....|.+.
T Consensus 83 ~~~~--g~vtal~~S~---iGFvaigy~~G~l~viD~RGPavI~----~~~i~~~~~~~~~~~~vt~ieF~vm------- 146 (395)
T PF08596_consen 83 DAKQ--GPVTALKNSD---IGFVAIGYESGSLVVIDLRGPAVIY----NENIRESFLSKSSSSYVTSIEFSVM------- 146 (395)
T ss_dssp ---S---SEEEEEE-B---TSEEEEEETTSEEEEEETTTTEEEE----EEEGGG--T-SS----EEEEEEEEE-------
T ss_pred eccC--CcEeEEecCC---CcEEEEEecCCcEEEEECCCCeEEe----eccccccccccccccCeeEEEEEEE-------
Confidence 1222 5699999875 4899999999999999998775432 211111 001111111
Q ss_pred ccCCCCcceeeccCCceeeecCCCCCCceeccCC-CceEEEeecCcCeEEEEecC--C-CceeeeecccccCCCCCcCCC
Q 021291 127 KQANEPKDCYEREVGETVDTDSLCDSKDDVPAEG-PKYMAVAGEQLSEVEIWDLN--T-AERCTRLHQNSCGGSPNFSSK 202 (314)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~d~~i~vwd~~--~-~~~~~~~~~~~~~~~~~h~~~ 202 (314)
.+.-|+ ..+++.+|+..|.+.+|.+. . +.-...+.. ....
T Consensus 147 ----------------------------~~~~D~ySSi~L~vGTn~G~v~~fkIlp~~~g~f~v~~~~--------~~~~ 190 (395)
T PF08596_consen 147 ----------------------------TLGGDGYSSICLLVGTNSGNVLTFKILPSSNGRFSVQFAG--------ATTN 190 (395)
T ss_dssp ----------------------------E-TTSSSEEEEEEEEETTSEEEEEEEEE-GGG-EEEEEEE--------EE--
T ss_pred ----------------------------ecCCCcccceEEEEEeCCCCEEEEEEecCCCCceEEEEee--------cccc
Confidence 111111 12344467777999888764 1 212222221 1011
Q ss_pred CCceeeeEEEecCCC-----------------CCCceEEEEeecCCcEEEEEccCCCCceEeeecCCcceEEEEE-----
Q 021291 203 GRGMCMAVQAYLPSK-----------------SQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPVLCLSI----- 260 (314)
Q Consensus 203 ~~~~~~~~~~~~p~~-----------------~~g~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~~~~----- 260 (314)
..+.+..+..|+.+. ..-. -++....+..++++..-+ .+..+......-....+.+
T Consensus 191 ~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~-g~vVvvSe~~irv~~~~~-~k~~~K~~~~~~~~~~~~vv~~~~ 268 (395)
T PF08596_consen 191 HDSPILSIIPINADTGESALATISAMQGLSKGISIP-GYVVVVSESDIRVFKPPK-SKGAHKSFDDPFLCSSASVVPTIS 268 (395)
T ss_dssp SS----EEEEEETTT--B-B-BHHHHHGGGGT-----EEEEEE-SSEEEEE-TT----EEEEE-SS-EEEEEEEEEEEE-
T ss_pred CCCceEEEEEEECCCCCcccCchhHhhccccCCCcC-cEEEEEcccceEEEeCCC-CcccceeeccccccceEEEEeecc
Confidence 233444444342210 0011 233334467899999887 4444433322222333444
Q ss_pred eCCCCeEEEecCCCcEEEEecCCCeeeEe
Q 021291 261 DESCNGGISGGADQKIVLYNLDHSTYVLF 289 (314)
Q Consensus 261 ~~~~~~l~s~s~dg~i~iw~~~~~~~~~~ 289 (314)
...+..|++-..+|.|+++.+..-+.+..
T Consensus 269 ~~~~~~Lv~l~~~G~i~i~SLP~Lkei~~ 297 (395)
T PF08596_consen 269 RNGGYCLVCLFNNGSIRIYSLPSLKEIKS 297 (395)
T ss_dssp EEEEEEEEEEETTSEEEEEETTT--EEEE
T ss_pred cCCceEEEEEECCCcEEEEECCCchHhhc
Confidence 23566788888999999999999887754
No 325
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=98.20 E-value=0.0004 Score=45.86 Aligned_cols=68 Identities=21% Similarity=0.320 Sum_probs=52.7
Q ss_pred eeEEEEcc---CC-CEEEEecCCCeEEEEeCCCCeEEEEEeccCCcccEEEEEEcccCCCCeEEEeecCCeEEEEeCCCC
Q 021291 21 VTDVCFHQ---TK-PILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENG 96 (314)
Q Consensus 21 v~~~~~~~---~~-~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~ 96 (314)
|++|++.. || +.|+.|+.|..||||+- .+.+..+... +.|.++.-.. . ..|+.+..+|+|-+|+-...
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~--~e~~~Ei~e~---~~v~~L~~~~--~-~~F~Y~l~NGTVGvY~~~~R 73 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKG--DEIVAEITET---DKVTSLCSLG--G-GRFAYALANGTVGVYDRSQR 73 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeC--CcEEEEEecc---cceEEEEEcC--C-CEEEEEecCCEEEEEeCcce
Confidence 67777765 33 58999999999999984 3666666554 4588888877 4 78999999999999987543
No 326
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=98.18 E-value=1.7e-05 Score=66.76 Aligned_cols=77 Identities=17% Similarity=0.226 Sum_probs=61.2
Q ss_pred CCceeeeEEEecCCCCCCceEEEEeecCCcEEEEEccCCCCceEeeecCCcceEEEEEeCCCCeEEEecCCCcEEEEecC
Q 021291 203 GRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLD 282 (314)
Q Consensus 203 ~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~iw~~~ 282 (314)
..+.+.+++ ++|++. .++.|+.||.|.+||... + +..+....-..+.++|+|+|..+++|+..|.+.+||+.
T Consensus 258 L~s~v~~ca-~sp~E~----kLvlGC~DgSiiLyD~~~-~--~t~~~ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~A 329 (545)
T PF11768_consen 258 LPSQVICCA-RSPSED----KLVLGCEDGSIILYDTTR-G--VTLLAKAEFIPTLIAWHPDGAIFVVGSEQGELQCFDMA 329 (545)
T ss_pred cCCcceEEe-cCcccc----eEEEEecCCeEEEEEcCC-C--eeeeeeecccceEEEEcCCCcEEEEEcCCceEEEEEee
Confidence 355677776 999844 899999999999999875 3 23333445678899999999999999999999999987
Q ss_pred CCeee
Q 021291 283 HSTYV 287 (314)
Q Consensus 283 ~~~~~ 287 (314)
-....
T Consensus 330 Lspi~ 334 (545)
T PF11768_consen 330 LSPIK 334 (545)
T ss_pred cCccc
Confidence 55433
No 327
>PRK02888 nitrous-oxide reductase; Validated
Probab=98.16 E-value=0.0003 Score=60.95 Aligned_cols=185 Identities=14% Similarity=0.041 Sum_probs=114.8
Q ss_pred EccCCCEEE-EecCCCeEEEEeCCCCeEEEEEeccCCcccEEEEEEcccCCCCeEEEeecCC----eEEEEeCCCCCCCC
Q 021291 26 FHQTKPILF-AGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDG----TVKCWDIENGGLSS 100 (314)
Q Consensus 26 ~~~~~~~l~-s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg----~v~iwd~~~~~~~~ 100 (314)
++|||+.+. +.-..+.+.+.|.++.+....+.... ....+++++ +++++++.+.+. ++..-+..+..
T Consensus 200 lpnDGk~l~~~~ey~~~vSvID~etmeV~~qV~Vdg---npd~v~~sp--dGk~afvTsyNsE~G~tl~em~a~e~d--- 271 (635)
T PRK02888 200 LPNDGKDLDDPKKYRSLFTAVDAETMEVAWQVMVDG---NLDNVDTDY--DGKYAFSTCYNSEEGVTLAEMMAAERD--- 271 (635)
T ss_pred cCCCCCEeecccceeEEEEEEECccceEEEEEEeCC---CcccceECC--CCCEEEEeccCcccCcceeeeccccCc---
Confidence 456776553 33345678888888777766665543 245678888 888888776421 22222211110
Q ss_pred CCeeeeecceeeEEEeeeeeccccccccCCCCcceeeccCCceeeecCCCCCCceeccCCCceEEEeecCcCeEEEEecC
Q 021291 101 NPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQLSEVEIWDLN 180 (314)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~vwd~~ 180 (314)
....+.+... ..+.++|++.++ + ++.|.+.|.+
T Consensus 272 -----------~~vvfni~~i--------------------------------ea~vkdGK~~~V--~--gn~V~VID~~ 304 (635)
T PRK02888 272 -----------WVVVFNIARI--------------------------------EEAVKAGKFKTI--G--GSKVPVVDGR 304 (635)
T ss_pred -----------eEEEEchHHH--------------------------------HHhhhCCCEEEE--C--CCEEEEEECC
Confidence 1111111100 124567776654 2 4789999999
Q ss_pred C-----CceeeeecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEeecCCcEEEEEccCCCC-----------c
Q 021291 181 T-----AERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGI-----------P 244 (314)
Q Consensus 181 ~-----~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~-----------~ 244 (314)
+ .+.+..++. ......+. ++|| |+.+++++..+.+|.|.|+.+... .
T Consensus 305 t~~~~~~~v~~yIPV-------------GKsPHGV~-vSPD---GkylyVanklS~tVSVIDv~k~k~~~~~~~~~~~~v 367 (635)
T PRK02888 305 KAANAGSALTRYVPV-------------PKNPHGVN-TSPD---GKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRDAV 367 (635)
T ss_pred ccccCCcceEEEEEC-------------CCCccceE-ECCC---CCEEEEeCCCCCcEEEEEChhhhhhhhccCCccceE
Confidence 8 345555542 22455565 9998 775778888899999999986322 1
Q ss_pred eEeeecCCcceEEEEEeCCCCeEEEecCCCcEEEEecCC
Q 021291 245 LTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDH 283 (314)
Q Consensus 245 ~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~iw~~~~ 283 (314)
+.+..- ...-...+|+++|....|--.|..|..|+++.
T Consensus 368 vaevev-GlGPLHTaFDg~G~aytslf~dsqv~kwn~~~ 405 (635)
T PRK02888 368 VAEPEL-GLGPLHTAFDGRGNAYTTLFLDSQIVKWNIEA 405 (635)
T ss_pred EEeecc-CCCcceEEECCCCCEEEeEeecceeEEEehHH
Confidence 333332 22335678999999888888999999999986
No 328
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=98.04 E-value=1.6e-05 Score=41.86 Aligned_cols=39 Identities=26% Similarity=0.308 Sum_probs=34.4
Q ss_pred CCceEeeecCCcceEEEEEeCCCCeEEEecCCCcEEEEe
Q 021291 242 GIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYN 280 (314)
Q Consensus 242 ~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~iw~ 280 (314)
.++...+..|...|.++.|.+++.++++++.|+.+++|+
T Consensus 2 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 2 GELLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred cEEEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 345677788999999999999889999999999999996
No 329
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=98.03 E-value=0.0033 Score=53.49 Aligned_cols=185 Identities=12% Similarity=0.070 Sum_probs=95.5
Q ss_pred ceEEecCCCCceeEEEEccCCCEEEEecCCCeEEEEeCCCCeEEEEEeccCCcccEEEEEEcccCCCCeEEEeecCCeEE
Q 021291 10 PVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVK 89 (314)
Q Consensus 10 ~~~~l~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~v~ 89 (314)
.++.+-...-....+.++|+|++++. ..||.-.|+.....+.... + .-....|.+ . +.+++-...++|.
T Consensus 24 ~~k~lg~~~~~p~~ls~npngr~v~V-~g~geY~iyt~~~~r~k~~--G-----~g~~~vw~~--~-n~yAv~~~~~~I~ 92 (443)
T PF04053_consen 24 SVKELGSCEIYPQSLSHNPNGRFVLV-CGDGEYEIYTALAWRNKAF--G-----SGLSFVWSS--R-NRYAVLESSSTIK 92 (443)
T ss_dssp --EEEEE-SS--SEEEE-TTSSEEEE-EETTEEEEEETTTTEEEEE--E-----E-SEEEE-T--S-SEEEEE-TTS-EE
T ss_pred EeccCCCCCcCCeeEEECCCCCEEEE-EcCCEEEEEEccCCccccc--C-----ceeEEEEec--C-ccEEEEECCCeEE
Confidence 34445455566889999999998888 5677888988554444332 1 135678887 5 5577777788999
Q ss_pred EEeCCCCCCCCCCeeeeecceeeEEEeeeeeccccccccCCCCcceeeccCCceeeecCCCCCCceeccCCCceEEEeec
Q 021291 90 CWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGE 169 (314)
Q Consensus 90 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 169 (314)
|+.--..+..+ .+..... .... |. |. ++++.+.
T Consensus 93 I~kn~~~~~~k--~i~~~~~-~~~I-----------------------------------------f~--G~-LL~~~~~ 125 (443)
T PF04053_consen 93 IYKNFKNEVVK--SIKLPFS-VEKI-----------------------------------------FG--GN-LLGVKSS 125 (443)
T ss_dssp EEETTEE-TT-------SS--EEEE-----------------------------------------E---SS-SEEEEET
T ss_pred EEEcCccccce--EEcCCcc-cceE-----------------------------------------Ec--Cc-EEEEECC
Confidence 96322222211 1111110 0000 22 44 5554543
Q ss_pred CcCeEEEEecCCCceeeeecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEeecCCcEEEEEccCCC-------
Q 021291 170 QLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPG------- 242 (314)
Q Consensus 170 ~d~~i~vwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~------- 242 (314)
+.|.+||+.+++.+..+.. . .+..+. |+++ |. +++..+. ..+.+++.+. .
T Consensus 126 --~~i~~yDw~~~~~i~~i~v-------------~-~vk~V~-Ws~~---g~-~val~t~-~~i~il~~~~-~~~~~~~~ 182 (443)
T PF04053_consen 126 --DFICFYDWETGKLIRRIDV-------------S-AVKYVI-WSDD---GE-LVALVTK-DSIYILKYNL-EAVAAIPE 182 (443)
T ss_dssp --TEEEEE-TTT--EEEEESS---------------E-EEEE-E-TT---SS-EEEEE-S--SEEEEEE-H-HHHHHBTT
T ss_pred --CCEEEEEhhHcceeeEEec-------------C-CCcEEE-EECC---CC-EEEEEeC-CeEEEEEecc-hhcccccc
Confidence 5899999999999998872 2 356776 9988 55 6666664 4788877653 1
Q ss_pred ----CceEeeecCCcceEEEEEeCCCCeEEEecCCCcEEE
Q 021291 243 ----IPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVL 278 (314)
Q Consensus 243 ----~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~i 278 (314)
.....+..-...|.+..|..+ -++.|... .++.
T Consensus 183 ~g~e~~f~~~~E~~~~IkSg~W~~d-~fiYtT~~--~lkY 219 (443)
T PF04053_consen 183 EGVEDAFELIHEISERIKSGCWVED-CFIYTTSN--HLKY 219 (443)
T ss_dssp TB-GGGEEEEEEE-S--SEEEEETT-EEEEE-TT--EEEE
T ss_pred cCchhceEEEEEecceeEEEEEEcC-EEEEEcCC--eEEE
Confidence 033444333567888888777 34444332 4554
No 330
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=98.01 E-value=0.00088 Score=56.64 Aligned_cols=114 Identities=12% Similarity=0.096 Sum_probs=66.9
Q ss_pred ceeccCCCceEEEeecCcCe--EEEEecCCCceeeeecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEeecCC
Q 021291 154 DDVPAEGPKYMAVAGEQLSE--VEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDG 231 (314)
Q Consensus 154 ~~~~~~~~~~~~~~g~~d~~--i~vwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg 231 (314)
-+|+|||+.+++ +...|+. |+++|+..+.... +.. . .+....- .|+|+ |+.++++.+..|
T Consensus 243 P~fspDG~~l~f-~~~rdg~~~iy~~dl~~~~~~~-Lt~---------~---~gi~~~P-s~spd---G~~ivf~Sdr~G 304 (425)
T COG0823 243 PAFSPDGSKLAF-SSSRDGSPDIYLMDLDGKNLPR-LTN---------G---FGINTSP-SWSPD---GSKIVFTSDRGG 304 (425)
T ss_pred ccCCCCCCEEEE-EECCCCCccEEEEcCCCCccee-ccc---------C---CccccCc-cCCCC---CCEEEEEeCCCC
Confidence 569999987766 4555665 6667877766333 331 1 1111122 39998 665667777777
Q ss_pred cEEEEEccCCCCceEeeecCCcceEEEEEeCCCCeEEEecC-CCc--EEEEecCCCe
Q 021291 232 SILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGA-DQK--IVLYNLDHST 285 (314)
Q Consensus 232 ~i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~-dg~--i~iw~~~~~~ 285 (314)
.-.||-.+..+.....+......-..-.|+|+|.+|+..+. +|. |.+.|+.++.
T Consensus 305 ~p~I~~~~~~g~~~~riT~~~~~~~~p~~SpdG~~i~~~~~~~g~~~i~~~~~~~~~ 361 (425)
T COG0823 305 RPQIYLYDLEGSQVTRLTFSGGGNSNPVWSPDGDKIVFESSSGGQWDIDKNDLASGG 361 (425)
T ss_pred CcceEEECCCCCceeEeeccCCCCcCccCCCCCCEEEEEeccCCceeeEEeccCCCC
Confidence 65555443324444444433333236678999999877664 344 6666666555
No 331
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=97.97 E-value=0.0096 Score=51.92 Aligned_cols=70 Identities=23% Similarity=0.248 Sum_probs=45.2
Q ss_pred CEEEEecCCCeEEEEeCCCCeEEEEEeccCCcccEEEEEEcccCCCCeEEEee---------cCCeEEEEeCCCCCCCC
Q 021291 31 PILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQG---------RDGTVKCWDIENGGLSS 100 (314)
Q Consensus 31 ~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~---------~dg~v~iwd~~~~~~~~ 100 (314)
..++.++.+|.|.-+|.++|+.+..+........-..+.-+|.-.+..++.++ .++.|..+|..+++...
T Consensus 111 ~~V~v~~~~g~v~AlD~~TG~~~W~~~~~~~~~~~~~i~ssP~v~~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W 189 (488)
T cd00216 111 RKVFFGTFDGRLVALDAETGKQVWKFGNNDQVPPGYTMTGAPTIVKKLVIIGSSGAEFFACGVRGALRAYDVETGKLLW 189 (488)
T ss_pred CeEEEecCCCeEEEEECCCCCEeeeecCCCCcCcceEecCCCEEECCEEEEeccccccccCCCCcEEEEEECCCCceee
Confidence 57788889999999999999999887654320000112222211224455543 36889999999998765
No 332
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=97.92 E-value=0.00039 Score=61.42 Aligned_cols=71 Identities=18% Similarity=0.253 Sum_probs=61.7
Q ss_pred eeEEEEccCCCEEEEecCCCeEEEEeCCCCeEEEEEeccCCcccEEEEEEcccCCCCeEEEeecCCeEEEEeCCC
Q 021291 21 VTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIEN 95 (314)
Q Consensus 21 v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~ 95 (314)
+++++|+|..-.|+.|-.-|.+.+|...+.+.-.....|. .+|..+.|++ +|+.++++..-|.|.+|....
T Consensus 62 atSLCWHpe~~vLa~gwe~g~~~v~~~~~~e~htv~~th~--a~i~~l~wS~--~G~~l~t~d~~g~v~lwr~d~ 132 (1416)
T KOG3617|consen 62 ATSLCWHPEEFVLAQGWEMGVSDVQKTNTTETHTVVETHP--APIQGLDWSH--DGTVLMTLDNPGSVHLWRYDV 132 (1416)
T ss_pred hhhhccChHHHHHhhccccceeEEEecCCceeeeeccCCC--CCceeEEecC--CCCeEEEcCCCceeEEEEeee
Confidence 4679999988889999999999999988776666666677 5599999999 999999999999999998763
No 333
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=97.89 E-value=0.0022 Score=54.27 Aligned_cols=168 Identities=12% Similarity=0.022 Sum_probs=96.7
Q ss_pred EecCCCCceeEEEEccCCCEEEEe---cCC-CeEEEEeCCCCeEEEEEeccCCcccEEEEEEcccCCCCeEE-EeecCCe
Q 021291 13 VLRGHRASVTDVCFHQTKPILFAG---TTG-GELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVI-SQGRDGT 87 (314)
Q Consensus 13 ~l~~h~~~v~~~~~~~~~~~l~s~---~~d-g~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~-s~~~dg~ 87 (314)
.+..-...+..-+|+|++..++-. ... ..+.++++++++....+... ..-..-+|+| ||+.|+ +...||.
T Consensus 187 ~l~~~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~~~---g~~~~P~fsp--DG~~l~f~~~rdg~ 261 (425)
T COG0823 187 KLTDSGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILNFN---GNNGAPAFSP--DGSKLAFSSSRDGS 261 (425)
T ss_pred EecccCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeeccC---CccCCccCCC--CCCEEEEEECCCCC
Confidence 333344566777899988766543 222 46999999988765554422 1245678999 888777 5555665
Q ss_pred --EEEEeCCCCCCCCCCeeeeecceeeEEEeeeeeccccccccCCCCcceeeccCCce--eeecCCCCC--CceeccCCC
Q 021291 88 --VKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGET--VDTDSLCDS--KDDVPAEGP 161 (314)
Q Consensus 88 --v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~--~~~~~~~~~ 161 (314)
|.+.|+.++...+ +..... ......+++.+.........++...++....... ......... .-.|+|+|+
T Consensus 262 ~~iy~~dl~~~~~~~--Lt~~~g-i~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~~riT~~~~~~~~p~~SpdG~ 338 (425)
T COG0823 262 PDIYLMDLDGKNLPR--LTNGFG-INTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQVTRLTFSGGGNSNPVWSPDGD 338 (425)
T ss_pred ccEEEEcCCCCccee--cccCCc-cccCccCCCCCCEEEEEeCCCCCcceEEECCCCCceeEeeccCCCCcCccCCCCCC
Confidence 5566777665322 111111 1224455666665566666666666665544322 111221111 278999999
Q ss_pred ceEEEeecCcCe--EEEEecCCCceeeeec
Q 021291 162 KYMAVAGEQLSE--VEIWDLNTAERCTRLH 189 (314)
Q Consensus 162 ~~~~~~g~~d~~--i~vwd~~~~~~~~~~~ 189 (314)
.++..+ ..+|. |.+.|+.++...+.+.
T Consensus 339 ~i~~~~-~~~g~~~i~~~~~~~~~~~~~lt 367 (425)
T COG0823 339 KIVFES-SSGGQWDIDKNDLASGGKIRILT 367 (425)
T ss_pred EEEEEe-ccCCceeeEEeccCCCCcEEEcc
Confidence 887755 33454 7777776665444433
No 334
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.89 E-value=7.7e-05 Score=63.32 Aligned_cols=79 Identities=18% Similarity=0.227 Sum_probs=69.3
Q ss_pred CCCceeEEEEccCCCEEEEecCCCeEEEEeCCCCeEEEEEeccCCcccEE-EEEEcccCCCCeEEEeecCCeEEEEeCCC
Q 021291 17 HRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIV-SVATGPSIGLNKVISQGRDGTVKCWDIEN 95 (314)
Q Consensus 17 h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~-~~~~~~~~~~~~l~s~~~dg~v~iwd~~~ 95 (314)
-...|.-+.|+|.-.++|++..+|.|.+..+. .+.+.++..+..+ ++ +++|.| ||+.|+.|-.||+|++-|+++
T Consensus 19 l~~~i~~~ewnP~~dLiA~~t~~gelli~R~n-~qRlwtip~p~~~--v~~sL~W~~--DGkllaVg~kdG~I~L~Dve~ 93 (665)
T KOG4640|consen 19 LPINIKRIEWNPKMDLIATRTEKGELLIHRLN-WQRLWTIPIPGEN--VTASLCWRP--DGKLLAVGFKDGTIRLHDVEK 93 (665)
T ss_pred cccceEEEEEcCccchhheeccCCcEEEEEec-cceeEeccCCCCc--cceeeeecC--CCCEEEEEecCCeEEEEEccC
Confidence 34568889999999999999999999999988 7888888877643 66 999999 999999999999999999999
Q ss_pred CCCCC
Q 021291 96 GGLSS 100 (314)
Q Consensus 96 ~~~~~ 100 (314)
+..+.
T Consensus 94 ~~~l~ 98 (665)
T KOG4640|consen 94 GGRLV 98 (665)
T ss_pred CCcee
Confidence 87654
No 335
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=97.87 E-value=3.2e-05 Score=67.88 Aligned_cols=114 Identities=15% Similarity=0.147 Sum_probs=83.0
Q ss_pred ceeccCCCceEEEee--cCcCeEEEEecCCCceeeeecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEeecCC
Q 021291 154 DDVPAEGPKYMAVAG--EQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDG 231 (314)
Q Consensus 154 ~~~~~~~~~~~~~~g--~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg 231 (314)
.+|+|..+.+.+++- ...|.|.||- .+|++-..... .-.+.+++ |+|.. ..|+.|-.-|
T Consensus 21 ~SWHPsePlfAVA~fS~er~GSVtIfa-dtGEPqr~Vt~-------------P~hatSLC-WHpe~----~vLa~gwe~g 81 (1416)
T KOG3617|consen 21 SSWHPSEPLFAVASFSPERGGSVTIFA-DTGEPQRDVTY-------------PVHATSLC-WHPEE----FVLAQGWEMG 81 (1416)
T ss_pred cccCCCCceeEEEEecCCCCceEEEEe-cCCCCCccccc-------------ceehhhhc-cChHH----HHHhhccccc
Confidence 568898775544332 2357788883 55664433331 11344565 99963 2889999999
Q ss_pred cEEEEEccCCCCceEeeecCCcceEEEEEeCCCCeEEEecCCCcEEEEecCCCeee
Q 021291 232 SILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTYV 287 (314)
Q Consensus 232 ~i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~iw~~~~~~~~ 287 (314)
.+.+|...+ .+.-.....|..+|..+.|+++|..|+|+..-|.|.+|..+...++
T Consensus 82 ~~~v~~~~~-~e~htv~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d~~g~~ 136 (1416)
T KOG3617|consen 82 VSDVQKTNT-TETHTVVETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYDVIGEI 136 (1416)
T ss_pred eeEEEecCC-ceeeeeccCCCCCceeEEecCCCCeEEEcCCCceeEEEEeeecccc
Confidence 999999886 5555555689999999999999999999999999999998844443
No 336
>PRK02888 nitrous-oxide reductase; Validated
Probab=97.86 E-value=0.0019 Score=56.19 Aligned_cols=110 Identities=13% Similarity=0.130 Sum_probs=62.8
Q ss_pred ceeccCCCceEEEeecCcCeEEEEecCCCceeee--ecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEeecCC
Q 021291 154 DDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTR--LHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDG 231 (314)
Q Consensus 154 ~~~~~~~~~~~~~~g~~d~~i~vwd~~~~~~~~~--~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg 231 (314)
+.++|||+++++ ++..+.+|.|+|+.+.+.... +...... .+... ..-.....+ |.++ |. ...+-..|.
T Consensus 326 V~vSPDGkylyV-anklS~tVSVIDv~k~k~~~~~~~~~~~~v--vaeve-vGlGPLHTa-FDg~---G~-aytslf~ds 396 (635)
T PRK02888 326 VNTSPDGKYFIA-NGKLSPTVTVIDVRKLDDLFDGKIKPRDAV--VAEPE-LGLGPLHTA-FDGR---GN-AYTTLFLDS 396 (635)
T ss_pred eEECCCCCEEEE-eCCCCCcEEEEEChhhhhhhhccCCccceE--EEeec-cCCCcceEE-ECCC---CC-EEEeEeecc
Confidence 679999998776 566789999999987653110 0000000 00000 111223333 8776 55 788888899
Q ss_pred cEEEEEccCC---------CCceEeeecCCcceEEEE-----EeCCCCeEEEecC
Q 021291 232 SILVWDIRNP---------GIPLTAMKVHLEPVLCLS-----IDESCNGGISGGA 272 (314)
Q Consensus 232 ~i~vwd~~~~---------~~~~~~~~~h~~~v~~~~-----~~~~~~~l~s~s~ 272 (314)
.|..||+... ...+..+.-|-.+..-.+ -.++|++|++...
T Consensus 397 qv~kwn~~~a~~~~~g~~~~~v~~k~dV~y~pgh~~~~~g~t~~~dgk~l~~~nk 451 (635)
T PRK02888 397 QIVKWNIEAAIRAYKGEKVDPIVQKLDVHYQPGHNHASMGETKEADGKWLVSLNK 451 (635)
T ss_pred eeEEEehHHHHHHhccccCCcceecccCCCccceeeecCCCcCCCCCCEEEEccc
Confidence 9999998741 123444544443332222 2677777777643
No 337
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=97.86 E-value=0.0095 Score=48.03 Aligned_cols=184 Identities=13% Similarity=0.099 Sum_probs=113.5
Q ss_pred CeEEEEeCCCCeEEEEEeccCCcccEEEEEEcccCCCCeEEEeec----------CCeEEEEeCCCCCCCCCCeeeeecc
Q 021291 40 GELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGR----------DGTVKCWDIENGGLSSNPSLTIKTN 109 (314)
Q Consensus 40 g~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~----------dg~v~iwd~~~~~~~~~~~~~~~~~ 109 (314)
+.+.|+|.++++.+-.+...- .-.+..+| +++.+++++. ...|.+||..+-.... .+.+...
T Consensus 17 ~rv~viD~d~~k~lGmi~~g~----~~~~~~sp--dgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~--EI~iP~k 88 (342)
T PF06433_consen 17 SRVYVIDADSGKLLGMIDTGF----LGNVALSP--DGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTG--EIEIPPK 88 (342)
T ss_dssp EEEEEEETTTTEEEEEEEEES----SEEEEE-T--TSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEE--EEEETTS
T ss_pred ceEEEEECCCCcEEEEeeccc----CCceeECC--CCCEEEEEEEEEeccccccceeEEEEEecCcCcccc--eEecCCc
Confidence 489999999999888776543 34567889 9898887542 4469999999875433 1222221
Q ss_pred eeeEEEeeeeeccccccccCCCCcceeeccCCceeeecCCCCCC-ceeccCCCceEEEeecCcCeEEEEecCCCceeeee
Q 021291 110 SYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSK-DDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRL 188 (314)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~g~~d~~i~vwd~~~~~~~~~~ 188 (314)
+..... .+.. .+++.+|+.+++.--+--..|.|-|+..++.+..+
T Consensus 89 ~R~~~~----------------------------------~~~~~~~ls~dgk~~~V~N~TPa~SVtVVDl~~~kvv~ei 134 (342)
T PF06433_consen 89 PRAQVV----------------------------------PYKNMFALSADGKFLYVQNFTPATSVTVVDLAAKKVVGEI 134 (342)
T ss_dssp -B--BS------------------------------------GGGEEE-TTSSEEEEEEESSSEEEEEEETTTTEEEEEE
T ss_pred chheec----------------------------------ccccceEEccCCcEEEEEccCCCCeEEEEECCCCceeeee
Confidence 010000 0000 56889999888876666678999999999988877
Q ss_pred cccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEeecCCcEEEEEccCCCCceEeee----cCCcceE-EEEEeCC
Q 021291 189 HQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMK----VHLEPVL-CLSIDES 263 (314)
Q Consensus 189 ~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~~~~~----~h~~~v~-~~~~~~~ 263 (314)
.. . -|.. .-|.++ + -+.+-|.||.+.-..+...++...... .-.+++. .-++...
T Consensus 135 ~~-------------P-GC~~---iyP~~~--~-~F~~lC~DGsl~~v~Ld~~Gk~~~~~t~~F~~~~dp~f~~~~~~~~ 194 (342)
T PF06433_consen 135 DT-------------P-GCWL---IYPSGN--R-GFSMLCGDGSLLTVTLDADGKEAQKSTKVFDPDDDPLFEHPAYSRD 194 (342)
T ss_dssp EG-------------T-SEEE---EEEEET--T-EEEEEETTSCEEEEEETSTSSEEEEEEEESSTTTS-B-S--EEETT
T ss_pred cC-------------C-CEEE---EEecCC--C-ceEEEecCCceEEEEECCCCCEeEeeccccCCCCcccccccceECC
Confidence 72 1 2333 334422 1 577888899999999986576653322 1122222 2334444
Q ss_pred CCeEEEecCCCcEEEEecCCCe
Q 021291 264 CNGGISGGADQKIVLYNLDHST 285 (314)
Q Consensus 264 ~~~l~s~s~dg~i~iw~~~~~~ 285 (314)
+..++--+.+|.|+--|+....
T Consensus 195 ~~~~~F~Sy~G~v~~~dlsg~~ 216 (342)
T PF06433_consen 195 GGRLYFVSYEGNVYSADLSGDS 216 (342)
T ss_dssp TTEEEEEBTTSEEEEEEETTSS
T ss_pred CCeEEEEecCCEEEEEeccCCc
Confidence 4344446788888888887665
No 338
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=97.85 E-value=4.4e-06 Score=70.72 Aligned_cols=169 Identities=20% Similarity=0.252 Sum_probs=101.7
Q ss_pred EecCCCCceeEEEEcc-CCCEEEEec----CCCeEEEEeCCCC--eE--EEEEeccCCcccEEEEEEcccCCCCeEEEee
Q 021291 13 VLRGHRASVTDVCFHQ-TKPILFAGT----TGGELRIWDTVQH--RT--VSSSWVHSAAHGIVSVATGPSIGLNKVISQG 83 (314)
Q Consensus 13 ~l~~h~~~v~~~~~~~-~~~~l~s~~----~dg~v~iwd~~~~--~~--~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~ 83 (314)
...+|...+++++|++ |.+.||.|- .|..+.|||+.++ .+ -..+... ......+++|.. +.+++++|.
T Consensus 97 ~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi~s~ltvPke~~~fs~~-~l~gqns~cwlr--d~klvlaGm 173 (783)
T KOG1008|consen 97 VTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDINSLLTVPKESPLFSSS-TLDGQNSVCWLR--DTKLVLAGM 173 (783)
T ss_pred ecccccccccccccccccHHHHHhhhhhhcccCCccceecccccCCCccccccccc-cccCcccccccc--Ccchhhccc
Confidence 3456788999999999 677888773 3668999999876 22 2223221 113366888886 878888999
Q ss_pred cCCeEEEEeCCCCCCCCCCeeeeecceeeEEEeeeeeccccccccCCCCcceeeccCCceeeecCCCCCCceeccCCCce
Q 021291 84 RDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKY 163 (314)
Q Consensus 84 ~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (314)
....++++|++...... ..+.+.. ++++.+.|-....
T Consensus 174 ~sr~~~ifdlRqs~~~~---~svnTk~----------------------------------------vqG~tVdp~~~nY 210 (783)
T KOG1008|consen 174 TSRSVHIFDLRQSLDSV---SSVNTKY----------------------------------------VQGITVDPFSPNY 210 (783)
T ss_pred ccchhhhhhhhhhhhhh---hhhhhhh----------------------------------------cccceecCCCCCc
Confidence 99999999998432111 0111111 1113345533333
Q ss_pred EEEeecCcCeEEEEe-cCCCc-eeeeecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEeecCCcEEEEEccC
Q 021291 164 MAVAGEQLSEVEIWD-LNTAE-RCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRN 240 (314)
Q Consensus 164 ~~~~g~~d~~i~vwd-~~~~~-~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~ 240 (314)
+ +...|+.|.+|| .+.-+ ++..+.. ...........++ |.|..+ |. ..+..-..++|+++|+..
T Consensus 211 ~--cs~~dg~iAiwD~~rnienpl~~i~~--------~~N~~~~~l~~~a-ycPtrt-gl-la~l~RdS~tIrlydi~~ 276 (783)
T KOG1008|consen 211 F--CSNSDGDIAIWDTYRNIENPLQIILR--------NENKKPKQLFALA-YCPTRT-GL-LAVLSRDSITIRLYDICV 276 (783)
T ss_pred e--eccccCceeeccchhhhccHHHHHhh--------CCCCcccceeeEE-eccCCc-ch-hhhhccCcceEEEecccc
Confidence 4 344589999999 44333 2222221 1111122467777 999864 54 333444557899999864
No 339
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=97.85 E-value=0.008 Score=49.38 Aligned_cols=184 Identities=10% Similarity=0.095 Sum_probs=103.6
Q ss_pred CeEEEEeCCCCeEEEEEeccCCcccEEEEEEcccCC-----CCeEEEeec----------CCeEEEEeCCCCCCCCCCee
Q 021291 40 GELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIG-----LNKVISQGR----------DGTVKCWDIENGGLSSNPSL 104 (314)
Q Consensus 40 g~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-----~~~l~s~~~----------dg~v~iwd~~~~~~~~~~~~ 104 (314)
+.|++.|..+.+.+..+..... +.+.+++.....+ ..+|+.|.. .|.|.++++.........+.
T Consensus 2 s~i~l~d~~~~~~~~~~~l~~~-E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~ 80 (321)
T PF03178_consen 2 SSIRLVDPTTFEVLDSFELEPN-EHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLK 80 (321)
T ss_dssp -EEEEEETTTSSEEEEEEEETT-EEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEE
T ss_pred cEEEEEeCCCCeEEEEEECCCC-ceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccceEEE
Confidence 4689999888888777665543 4466655433211 356776543 28899999987410000011
Q ss_pred eeecceeeEEEeeeeeccccccccCCCCcceeeccCCceeeecCCCCCCceeccCCCceEEEeecCcCeEEEEecCCCc-
Q 021291 105 TIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQLSEVEIWDLNTAE- 183 (314)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~vwd~~~~~- 183 (314)
........... .++.+-+.+++++ . ++.|.+|++...+
T Consensus 81 ~i~~~~~~g~V--------------------------------------~ai~~~~~~lv~~-~--g~~l~v~~l~~~~~ 119 (321)
T PF03178_consen 81 LIHSTEVKGPV--------------------------------------TAICSFNGRLVVA-V--GNKLYVYDLDNSKT 119 (321)
T ss_dssp EEEEEEESS-E--------------------------------------EEEEEETTEEEEE-E--TTEEEEEEEETTSS
T ss_pred EEEEEeecCcc--------------------------------------eEhhhhCCEEEEe-e--cCEEEEEEccCccc
Confidence 11111111111 1233334555543 3 3789999998777
Q ss_pred eeeeecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEeecCCcEEEEEccCCCCceEeee--cCCcceEEEEEe
Q 021291 184 RCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMK--VHLEPVLCLSID 261 (314)
Q Consensus 184 ~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~~~~~--~h~~~v~~~~~~ 261 (314)
....-. +. ....+.++. ...+ ++++|.....+.++..+.....+..+. .....++++.|-
T Consensus 120 l~~~~~---------~~--~~~~i~sl~-~~~~------~I~vgD~~~sv~~~~~~~~~~~l~~va~d~~~~~v~~~~~l 181 (321)
T PF03178_consen 120 LLKKAF---------YD--SPFYITSLS-VFKN------YILVGDAMKSVSLLRYDEENNKLILVARDYQPRWVTAAEFL 181 (321)
T ss_dssp EEEEEE---------E---BSSSEEEEE-EETT------EEEEEESSSSEEEEEEETTTE-EEEEEEESS-BEEEEEEEE
T ss_pred chhhhe---------ec--ceEEEEEEe-cccc------EEEEEEcccCEEEEEEEccCCEEEEEEecCCCccEEEEEEe
Confidence 332222 10 122566665 3322 899999888999886654233333333 234568888887
Q ss_pred CCCCeEEEecCCCcEEEEecCC
Q 021291 262 ESCNGGISGGADQKIVLYNLDH 283 (314)
Q Consensus 262 ~~~~~l~s~s~dg~i~iw~~~~ 283 (314)
+++..++.+..+|.+.++..+.
T Consensus 182 ~d~~~~i~~D~~gnl~~l~~~~ 203 (321)
T PF03178_consen 182 VDEDTIIVGDKDGNLFVLRYNP 203 (321)
T ss_dssp -SSSEEEEEETTSEEEEEEE-S
T ss_pred cCCcEEEEEcCCCeEEEEEECC
Confidence 5556889999999999998873
No 340
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.85 E-value=0.0001 Score=62.61 Aligned_cols=93 Identities=15% Similarity=0.124 Sum_probs=74.5
Q ss_pred eeeeEEEecCCCCCCceEEEEeecCCcEEEEEccCCCCceEeeecCCcceE-EEEEeCCCCeEEEecCCCcEEEEecCCC
Q 021291 206 MCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPVL-CLSIDESCNGGISGGADQKIVLYNLDHS 284 (314)
Q Consensus 206 ~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~h~~~v~-~~~~~~~~~~l~s~s~dg~i~iw~~~~~ 284 (314)
.+..+. |+|... ++|.+..+|.|.+..+. .+.+.++.-|...++ +++|.|||++|+.|=.||+|++.|++++
T Consensus 22 ~i~~~e-wnP~~d----LiA~~t~~gelli~R~n--~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~ 94 (665)
T KOG4640|consen 22 NIKRIE-WNPKMD----LIATRTEKGELLIHRLN--WQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKG 94 (665)
T ss_pred ceEEEE-EcCccc----hhheeccCCcEEEEEec--cceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCC
Confidence 344455 999744 89999999999999887 677888887888887 9999999999999999999999999999
Q ss_pred eeeEeeeeeeecCCCceeceeecc
Q 021291 285 TYVLFGIGFVCDQEGNKFGTTWHI 308 (314)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~w~~ 308 (314)
..+... .++++..+....|-+
T Consensus 95 ~~l~~~---~~s~e~~is~~~w~~ 115 (665)
T KOG4640|consen 95 GRLVSF---LFSVETDISKGIWDR 115 (665)
T ss_pred Cceecc---ccccccchheeeccc
Confidence 877542 344566666666643
No 341
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=97.83 E-value=0.0049 Score=53.56 Aligned_cols=77 Identities=10% Similarity=0.091 Sum_probs=58.8
Q ss_pred CCCceeEEEEccCCCEEEEecCCCeEEEEeCCCCeE---EEEEeccC-CcccEEEEEEcccCCCCeEEEeecCCeEEEEe
Q 021291 17 HRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRT---VSSSWVHS-AAHGIVSVATGPSIGLNKVISQGRDGTVKCWD 92 (314)
Q Consensus 17 h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~---~~~~~~~~-~~~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd 92 (314)
-.+.+..+..+++..++|.|+..|.|.++.+..+.. ...-..+. +...|++++|++ ++..+++|...|+|.+-.
T Consensus 75 ~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p~~~~~~t~~d~~~~~rVTal~Ws~--~~~k~ysGD~~Gkv~~~~ 152 (726)
T KOG3621|consen 75 ATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKELPRDLDYVTPCDKSHKCRVTALEWSK--NGMKLYSGDSQGKVVLTE 152 (726)
T ss_pred ccceEEEEEecchhHhhhhhcCCceEEeehhhccCCCcceeeccccccCCceEEEEEecc--cccEEeecCCCceEEEEE
Confidence 345566778888888999999999999998876322 11111111 236699999999 999999999999999988
Q ss_pred CCC
Q 021291 93 IEN 95 (314)
Q Consensus 93 ~~~ 95 (314)
+..
T Consensus 153 L~s 155 (726)
T KOG3621|consen 153 LDS 155 (726)
T ss_pred ech
Confidence 877
No 342
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=97.82 E-value=0.0039 Score=52.30 Aligned_cols=84 Identities=14% Similarity=0.153 Sum_probs=57.4
Q ss_pred ceEEecCCCCceeEEEEccCCCEEEEecCCCeEEEEeCCCCeEEEEEeccC------CcccEEEEEEccc---CCC---C
Q 021291 10 PVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHS------AAHGIVSVATGPS---IGL---N 77 (314)
Q Consensus 10 ~~~~l~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~------~~~~v~~~~~~~~---~~~---~ 77 (314)
|...++...++|++++.|.-| ++|.|..+|.+.|.|++....+..-.... ....|+++.|.-. .|+ -
T Consensus 78 P~~l~~~~~g~vtal~~S~iG-Fvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi 156 (395)
T PF08596_consen 78 PLTLLDAKQGPVTALKNSDIG-FVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSI 156 (395)
T ss_dssp EEEEE---S-SEEEEEE-BTS-EEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEE
T ss_pred chhheeccCCcEeEEecCCCc-EEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcccce
Confidence 455666678999999998666 99999999999999998777766532221 2345888988731 132 3
Q ss_pred eEEEeecCCeEEEEeCC
Q 021291 78 KVISQGRDGTVKCWDIE 94 (314)
Q Consensus 78 ~l~s~~~dg~v~iwd~~ 94 (314)
.|+.|...|.+.+|.+.
T Consensus 157 ~L~vGTn~G~v~~fkIl 173 (395)
T PF08596_consen 157 CLLVGTNSGNVLTFKIL 173 (395)
T ss_dssp EEEEEETTSEEEEEEEE
T ss_pred EEEEEeCCCCEEEEEEe
Confidence 68888999999999874
No 343
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=97.79 E-value=0.00078 Score=60.59 Aligned_cols=99 Identities=11% Similarity=0.086 Sum_probs=65.0
Q ss_pred ecCcCeEEEEecCCCc-eeeeecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEeecCCcEEEEEccCCCCceE
Q 021291 168 GEQLSEVEIWDLNTAE-RCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLT 246 (314)
Q Consensus 168 g~~d~~i~vwd~~~~~-~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~~ 246 (314)
|-.+..+..||+|-.. .+..-. .|.........|++ -..+ | +||+|+.+|.||+||--. .+...
T Consensus 548 Gls~n~lfriDpR~~~~k~v~~~--------~k~Y~~~~~Fs~~a-Tt~~---G--~iavgs~~G~IRLyd~~g-~~AKT 612 (794)
T PF08553_consen 548 GLSDNSLFRIDPRLSGNKLVDSQ--------SKQYSSKNNFSCFA-TTED---G--YIAVGSNKGDIRLYDRLG-KRAKT 612 (794)
T ss_pred EECCCceEEeccCCCCCceeecc--------ccccccCCCceEEE-ecCC---c--eEEEEeCCCcEEeecccc-hhhhh
Confidence 4446889999999543 222111 22222222333333 3333 4 799999999999999542 34445
Q ss_pred eeecCCcceEEEEEeCCCCeEEEecCCCcEEEEecC
Q 021291 247 AMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLD 282 (314)
Q Consensus 247 ~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~iw~~~ 282 (314)
.+.+-..+|..|+.+.||++|+..+ +..+.+++..
T Consensus 613 ~lp~lG~pI~~iDvt~DGkwilaTc-~tyLlLi~t~ 647 (794)
T PF08553_consen 613 ALPGLGDPIIGIDVTADGKWILATC-KTYLLLIDTL 647 (794)
T ss_pred cCCCCCCCeeEEEecCCCcEEEEee-cceEEEEEEe
Confidence 5667789999999999999986665 5567777753
No 344
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=97.76 E-value=0.016 Score=50.64 Aligned_cols=213 Identities=15% Similarity=0.108 Sum_probs=114.5
Q ss_pred CCEEEEecCCCeEEEEeCCCCeEEEEEeccCCc----ccEE--EEEEcccCCCCeEEEeecCCeEEEEeCCCCCCCCCCe
Q 021291 30 KPILFAGTTGGELRIWDTVQHRTVSSSWVHSAA----HGIV--SVATGPSIGLNKVISQGRDGTVKCWDIENGGLSSNPS 103 (314)
Q Consensus 30 ~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~----~~v~--~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~ 103 (314)
+..++.++.++.|.-.|..+|+.+..+...... ..+. .+... ++..++.++.++.|.-+|.++++.+.
T Consensus 61 ~g~vy~~~~~g~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~g~~~~---~~~~V~v~~~~g~v~AlD~~TG~~~W--- 134 (488)
T cd00216 61 DGDMYFTTSHSALFALDAATGKVLWRYDPKLPADRGCCDVVNRGVAYW---DPRKVFFGTFDGRLVALDAETGKQVW--- 134 (488)
T ss_pred CCEEEEeCCCCcEEEEECCCChhhceeCCCCCccccccccccCCcEEc---cCCeEEEecCCCeEEEEECCCCCEee---
Confidence 446777888999999999999988776543310 0011 11111 22678888889999999999998755
Q ss_pred eeeecceeeEEEeeeeeccccccccCCCCcceeeccCCceeeecCCCCCCceeccCCCceEEEe-------ecCcCeEEE
Q 021291 104 LTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVA-------GEQLSEVEI 176 (314)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------g~~d~~i~v 176 (314)
...........+.+...+ .+. +..+++.+ +..++.+.-
T Consensus 135 -~~~~~~~~~~~~~i~ssP--------------------------------~v~--~~~v~vg~~~~~~~~~~~~g~v~a 179 (488)
T cd00216 135 -KFGNNDQVPPGYTMTGAP--------------------------------TIV--KKLVIIGSSGAEFFACGVRGALRA 179 (488)
T ss_pred -eecCCCCcCcceEecCCC--------------------------------EEE--CCEEEEeccccccccCCCCcEEEE
Confidence 222111100000000000 011 12222211 123678999
Q ss_pred EecCCCceeeeeccccc-CCCCC-cCC------CCCceee-eEEEecCCCCCCceEEEEeecCC----------------
Q 021291 177 WDLNTAERCTRLHQNSC-GGSPN-FSS------KGRGMCM-AVQAYLPSKSQGFVNVLAGYEDG---------------- 231 (314)
Q Consensus 177 wd~~~~~~~~~~~~~~~-~~~~~-h~~------~~~~~~~-~~~~~~p~~~~g~~~l~~g~~dg---------------- 231 (314)
+|..+++.+-.+..... ..... ... .....+. +.. +.+. +. .++.++.++
T Consensus 180 lD~~TG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~g~~vw~~pa-~d~~---~g-~V~vg~~~g~~~~~~~~~~~~~~~~ 254 (488)
T cd00216 180 YDVETGKLLWRFYTTEPDPNAFPTWGPDRQMWGPGGGTSWASPT-YDPK---TN-LVYVGTGNGSPWNWGGRRTPGDNLY 254 (488)
T ss_pred EECCCCceeeEeeccCCCcCCCCCCCCCcceecCCCCCccCCee-EeCC---CC-EEEEECCCCCCCccCCccCCCCCCc
Confidence 99999988776653100 00000 000 0000111 111 3332 22 566676554
Q ss_pred --cEEEEEccCCCCceEeeec--CC--------cce-EEEEEeCCCC---eEEEecCCCcEEEEecCCCeeeEee
Q 021291 232 --SILVWDIRNPGIPLTAMKV--HL--------EPV-LCLSIDESCN---GGISGGADQKIVLYNLDHSTYVLFG 290 (314)
Q Consensus 232 --~i~vwd~~~~~~~~~~~~~--h~--------~~v-~~~~~~~~~~---~l~s~s~dg~i~iw~~~~~~~~~~~ 290 (314)
.|.-+|..+ ++.+-..+. |. .++ ..+. .-++. .++.++.+|.+...|.++++.++..
T Consensus 255 ~~~l~Ald~~t-G~~~W~~~~~~~~~~~~~~~s~p~~~~~~-~~~g~~~~~V~~g~~~G~l~ald~~tG~~~W~~ 327 (488)
T cd00216 255 TDSIVALDADT-GKVKWFYQTTPHDLWDYDGPNQPSLADIK-PKDGKPVPAIVHAPKNGFFYVLDRTTGKLISAR 327 (488)
T ss_pred eeeEEEEcCCC-CCEEEEeeCCCCCCcccccCCCCeEEecc-ccCCCeeEEEEEECCCceEEEEECCCCcEeeEe
Confidence 688899988 777666542 11 111 1111 12332 5788889999999999999998864
No 345
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=97.75 E-value=0.018 Score=48.01 Aligned_cols=267 Identities=13% Similarity=0.080 Sum_probs=127.5
Q ss_pred EEecCCCCceeEEEEccCCCEEEEecCCCeEEEEeCCCCeEEEEEeccCC---------------cccEEEEEEcccCCC
Q 021291 12 AVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSA---------------AHGIVSVATGPSIGL 76 (314)
Q Consensus 12 ~~l~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~---------------~~~v~~~~~~~~~~~ 76 (314)
..+......+....|||+|+.+|-.. ++.|.+++..+++..+.-..-.. -+.-..+.|+| |+
T Consensus 36 ~~l~~~~~~~~~~~~sP~g~~~~~v~-~~nly~~~~~~~~~~~lT~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSp--d~ 112 (353)
T PF00930_consen 36 TPLTPPPPKLQDAKWSPDGKYIAFVR-DNNLYLRDLATGQETQLTTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSP--DS 112 (353)
T ss_dssp EESS-EETTBSEEEE-SSSTEEEEEE-TTEEEEESSTTSEEEESES--TTTEEESB--HHHHHHTSSSSBSEEE-T--TS
T ss_pred EECcCCccccccceeecCCCeeEEEe-cCceEEEECCCCCeEEeccccceeEEcCccceeccccccccccceEECC--CC
Confidence 33333356788999999999988765 57899999887754432211100 01235788999 99
Q ss_pred CeEEEeec-CCeEEEEeCCCCCCCC--CC-eeeeecceeeEEEeeeeeccccccccCCCCcceeeccCCceeeecCC---
Q 021291 77 NKVISQGR-DGTVKCWDIENGGLSS--NP-SLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSL--- 149 (314)
Q Consensus 77 ~~l~s~~~-dg~v~iwd~~~~~~~~--~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 149 (314)
++|+.... +..|..+.+....... .| ....+ + +............++++..++.......
T Consensus 113 ~~la~~~~d~~~v~~~~~~~~~~~~~~yp~~~~~~--------Y-----Pk~G~~np~v~l~v~~~~~~~~~~~~~~~~~ 179 (353)
T PF00930_consen 113 KYLAFLRFDEREVPEYPLPDYSPPDSQYPEVESIR--------Y-----PKAGDPNPRVSLFVVDLASGKTTELDPPNSL 179 (353)
T ss_dssp SEEEEEEEE-TTS-EEEEEEESSSTESS-EEEEEE---------------BTTS---EEEEEEEESSSTCCCEE---HHH
T ss_pred CEEEEEEECCcCCceEEeeccCCccccCCcccccc--------c-----CCCCCcCCceEEEEEECCCCcEEEeeecccc
Confidence 99887654 3445444432111000 00 00111 0 0000000111122233333322111111
Q ss_pred CCCC-----ceeccCCCceEEEeecCc---CeEEEEecCCCceeeeecccccCCCCCcCCCCCceeeeEEEec-CCCCCC
Q 021291 150 CDSK-----DDVPAEGPKYMAVAGEQL---SEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYL-PSKSQG 220 (314)
Q Consensus 150 ~~~~-----~~~~~~~~~~~~~~g~~d---~~i~vwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~-p~~~~g 220 (314)
.... +.|.++++.+++..-..+ -.+.+.|..++.....+..... +. .. ...... |. ++ +
T Consensus 180 ~~~~~yl~~v~W~~d~~~l~~~~~nR~q~~~~l~~~d~~tg~~~~~~~e~~~----~W---v~-~~~~~~-~~~~~---~ 247 (353)
T PF00930_consen 180 NPQDYYLTRVGWSPDGKRLWVQWLNRDQNRLDLVLCDASTGETRVVLEETSD----GW---VD-VYDPPH-FLGPD---G 247 (353)
T ss_dssp HTSSEEEEEEEEEETTEEEEEEEEETTSTEEEEEEEEECTTTCEEEEEEESS----SS---SS-SSSEEE-E-TTT---S
T ss_pred CCCccCcccceecCCCcEEEEEEcccCCCEEEEEEEECCCCceeEEEEecCC----cc---ee-eecccc-cccCC---C
Confidence 0111 789899875555444332 2466778877665444332110 11 11 111222 44 54 3
Q ss_pred ceEEEEeecCCcEEEEEccCCCCceEeeecCCcceEE-EEEeCCCCeE-EEecCCC----cEEEEecC-CCeeeEe----
Q 021291 221 FVNVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPVLC-LSIDESCNGG-ISGGADQ----KIVLYNLD-HSTYVLF---- 289 (314)
Q Consensus 221 ~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~-~~~~~~~~~l-~s~s~dg----~i~iw~~~-~~~~~~~---- 289 (314)
..++.....+|.-+||-++..+.....+....-.|+. +.+++++..| +++..++ .|..-+++ .++....
T Consensus 248 ~~~l~~s~~~G~~hly~~~~~~~~~~~lT~G~~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~~~~~~~~~LT~~~ 327 (353)
T PF00930_consen 248 NEFLWISERDGYRHLYLYDLDGGKPRQLTSGDWEVTSILGWDEDNNRIYFTANGDNPGERHLYRVSLDSGGEPKCLTCED 327 (353)
T ss_dssp SEEEEEEETTSSEEEEEEETTSSEEEESS-SSS-EEEEEEEECTSSEEEEEESSGGTTSBEEEEEETTETTEEEESSTTS
T ss_pred CEEEEEEEcCCCcEEEEEcccccceeccccCceeecccceEcCCCCEEEEEecCCCCCceEEEEEEeCCCCCeEeccCCC
Confidence 3366666688876666555434555566655667765 5668776654 4555432 45555556 3333221
Q ss_pred -ee-eeeecCCCceeceee
Q 021291 290 -GI-GFVCDQEGNKFGTTW 306 (314)
Q Consensus 290 -~~-~~~~~~~~~~~~~~w 306 (314)
.. ..+++|+|..+...+
T Consensus 328 ~~~~~~~~Spdg~y~v~~~ 346 (353)
T PF00930_consen 328 GDHYSASFSPDGKYYVDTY 346 (353)
T ss_dssp STTEEEEE-TTSSEEEEEE
T ss_pred CCceEEEECCCCCEEEEEE
Confidence 12 466778888776653
No 346
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.70 E-value=0.00018 Score=57.86 Aligned_cols=89 Identities=18% Similarity=0.250 Sum_probs=68.6
Q ss_pred ceeccCCCceEEEeecCcCeEEEEecCCCceeeeecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEeecCCcE
Q 021291 154 DDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSI 233 (314)
Q Consensus 154 ~~~~~~~~~~~~~~g~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i 233 (314)
++|+|..+.++. .++.+.+|+|.|+++...+..+. . ...+++++ |.-++ ..+|++|-.+|.|
T Consensus 199 lafSp~~~GLl~-~asl~nkiki~dlet~~~vssy~--------a-----~~~~wSC~-wDlde---~h~IYaGl~nG~V 260 (463)
T KOG1645|consen 199 LAFSPFNEGLLG-LASLGNKIKIMDLETSCVVSSYI--------A-----YNQIWSCC-WDLDE---RHVIYAGLQNGMV 260 (463)
T ss_pred hccCccccceee-eeccCceEEEEecccceeeehee--------c-----cCCceeee-eccCC---cceeEEeccCceE
Confidence 889999887665 56778999999999988887776 2 34677776 98874 3389999999999
Q ss_pred EEEEccCCCCceEeeecC--CcceEEEEE
Q 021291 234 LVWDIRNPGIPLTAMKVH--LEPVLCLSI 260 (314)
Q Consensus 234 ~vwd~~~~~~~~~~~~~h--~~~v~~~~~ 260 (314)
+|||++.+..++..+.+. ..+|..++.
T Consensus 261 lvyD~R~~~~~~~e~~a~~t~~pv~~i~~ 289 (463)
T KOG1645|consen 261 LVYDMRQPEGPLMELVANVTINPVHKIAP 289 (463)
T ss_pred EEEEccCCCchHhhhhhhhccCcceeecc
Confidence 999999877777666542 335555544
No 347
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.66 E-value=0.0047 Score=52.02 Aligned_cols=99 Identities=12% Similarity=0.092 Sum_probs=64.9
Q ss_pred ecCcCeEEEEecCCCce--eeeecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEeecCCcEEEEEccCCCCce
Q 021291 168 GEQLSEVEIWDLNTAER--CTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPL 245 (314)
Q Consensus 168 g~~d~~i~vwd~~~~~~--~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~ 245 (314)
|-.|..|.-||+|-... +.... +|.-....... ||...++ | +|++|+.+|.|++||--. .+..
T Consensus 400 GLs~n~vfriDpRv~~~~kl~~~q--------~kqy~~k~nFs---c~aTT~s-G--~IvvgS~~GdIRLYdri~-~~AK 464 (644)
T KOG2395|consen 400 GLSDNSVFRIDPRVQGKNKLAVVQ--------SKQYSTKNNFS---CFATTES-G--YIVVGSLKGDIRLYDRIG-RRAK 464 (644)
T ss_pred eecCCceEEecccccCcceeeeee--------ccccccccccc---eeeecCC-c--eEEEeecCCcEEeehhhh-hhhh
Confidence 54578999999984332 22222 33221111222 2444433 4 899999999999999732 4555
Q ss_pred EeeecCCcceEEEEEeCCCCeEEEecCCCcEEEEecC
Q 021291 246 TAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLD 282 (314)
Q Consensus 246 ~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~iw~~~ 282 (314)
..+.+-..+|..|..+.+|++|+..+ +..+.+-++.
T Consensus 465 TAlPgLG~~I~hVdvtadGKwil~Tc-~tyLlLi~t~ 500 (644)
T KOG2395|consen 465 TALPGLGDAIKHVDVTADGKWILATC-KTYLLLIDTL 500 (644)
T ss_pred hcccccCCceeeEEeeccCcEEEEec-ccEEEEEEEe
Confidence 66778899999999999999876554 5567666654
No 348
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=97.65 E-value=0.028 Score=47.37 Aligned_cols=206 Identities=14% Similarity=0.098 Sum_probs=128.3
Q ss_pred eEEEEccCCC-EEEEecCCCeEEEEeCCCCeEEEEEeccCCcccEEEEEEcccCCCCeEEEeec---CCeEEEEeCCCCC
Q 021291 22 TDVCFHQTKP-ILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGR---DGTVKCWDIENGG 97 (314)
Q Consensus 22 ~~~~~~~~~~-~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~---dg~v~iwd~~~~~ 97 (314)
..++.++.+. ..++...+..|.+.|..+.+.......-. ....++++| +++.+..+.. ++++.+.|..+++
T Consensus 77 ~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~~~vG~---~P~~~~~~~--~~~~vYV~n~~~~~~~vsvid~~t~~ 151 (381)
T COG3391 77 AGVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLGSIPVGL---GPVGLAVDP--DGKYVYVANAGNGNNTVSVIDAATNK 151 (381)
T ss_pred cceeeCCCCCeEEEecCCCCeEEEEcCcccceeeEeeecc---CCceEEECC--CCCEEEEEecccCCceEEEEeCCCCe
Confidence 4677888776 44455556889999988777766654332 257899999 8877776655 6888888888776
Q ss_pred CCCCCeeeeecceeeEEEeeeeeccccccccCCCCcceeeccCCceeeecCCCCCCceeccCCCceEEEeecCcCeEEEE
Q 021291 98 LSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQLSEVEIW 177 (314)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~vw 177 (314)
... ........ ..+++.|+|+.++++. ..++.|.+.
T Consensus 152 ~~~----~~~vG~~P---------------------------------------~~~a~~p~g~~vyv~~-~~~~~v~vi 187 (381)
T COG3391 152 VTA----TIPVGNTP---------------------------------------TGVAVDPDGNKVYVTN-SDDNTVSVI 187 (381)
T ss_pred EEE----EEecCCCc---------------------------------------ceEEECCCCCeEEEEe-cCCCeEEEE
Confidence 533 11111100 0066889998777654 557999999
Q ss_pred ecCCCceeeeecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEeecC--CcEEEEEccCCCCceEe-eecCCcc
Q 021291 178 DLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYED--GSILVWDIRNPGIPLTA-MKVHLEP 254 (314)
Q Consensus 178 d~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~d--g~i~vwd~~~~~~~~~~-~~~h~~~ 254 (314)
|........ -.. +-..........+. ++|+ |....++-..+ +.+...|..+ +..... ...-...
T Consensus 188 ~~~~~~v~~-~~~-------~~~~~~~~~P~~i~-v~~~---g~~~yV~~~~~~~~~v~~id~~~-~~v~~~~~~~~~~~ 254 (381)
T COG3391 188 DTSGNSVVR-GSV-------GSLVGVGTGPAGIA-VDPD---GNRVYVANDGSGSNNVLKIDTAT-GNVTATDLPVGSGA 254 (381)
T ss_pred eCCCcceec-ccc-------ccccccCCCCceEE-ECCC---CCEEEEEeccCCCceEEEEeCCC-ceEEEeccccccCC
Confidence 977665543 110 00011122334444 8887 44233333333 6888888886 444433 2211114
Q ss_pred eEEEEEeCCCCeEEEe-cCCCcEEEEecCCCeeeEe
Q 021291 255 VLCLSIDESCNGGISG-GADQKIVLYNLDHSTYVLF 289 (314)
Q Consensus 255 v~~~~~~~~~~~l~s~-s~dg~i~iw~~~~~~~~~~ 289 (314)
...+..+|+|.++... +..+.+.+-|..+......
T Consensus 255 ~~~v~~~p~g~~~yv~~~~~~~V~vid~~~~~v~~~ 290 (381)
T COG3391 255 PRGVAVDPAGKAAYVANSQGGTVSVIDGATDRVVKT 290 (381)
T ss_pred CCceeECCCCCEEEEEecCCCeEEEEeCCCCceeee
Confidence 5678889999988766 4457899999888776654
No 349
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=97.61 E-value=0.0024 Score=55.33 Aligned_cols=124 Identities=15% Similarity=0.225 Sum_probs=79.1
Q ss_pred CCCceeEEEEccCCCEEEEecCCCeEEEEeCCCCeEEEEEeccCCcccEEEEEEcccCCCCeEEEeecCCeEEEEeCCCC
Q 021291 17 HRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENG 96 (314)
Q Consensus 17 h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~ 96 (314)
|...|.=-+++..+++++.|+.-|.+.+|+-..++.. .++.......+..+..++ +..+++.|+..|.|.++-++..
T Consensus 32 ~~~~v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~-~~~~~~~~~~~~~~~vs~--~e~lvAagt~~g~V~v~ql~~~ 108 (726)
T KOG3621|consen 32 FPARVKLTCVDATEEYLAMGSSAGSVYLYNRHTGEMR-KLKNEGATGITCVRSVSS--VEYLVAAGTASGRVSVFQLNKE 108 (726)
T ss_pred CcceEEEEEeecCCceEEEecccceEEEEecCchhhh-cccccCccceEEEEEecc--hhHhhhhhcCCceEEeehhhcc
Confidence 3344544556667889999999999999997655433 332211113356667777 7678888899999999988773
Q ss_pred CCCCCCeeeeecceeeEEEeeeeeccccccccCCCCcceeeccCCceeeecCCCCCCceeccCCCceEEEeecCcCeEEE
Q 021291 97 GLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQLSEVEI 176 (314)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~v 176 (314)
......+.-+.+..+.+.+.. ++|++++..++ +|...|+|..
T Consensus 109 -~p~~~~~~t~~d~~~~~rVTa-----------------------------------l~Ws~~~~k~y--sGD~~Gkv~~ 150 (726)
T KOG3621|consen 109 -LPRDLDYVTPCDKSHKCRVTA-----------------------------------LEWSKNGMKLY--SGDSQGKVVL 150 (726)
T ss_pred -CCCcceeeccccccCCceEEE-----------------------------------EEecccccEEe--ecCCCceEEE
Confidence 222112211111111111111 67999998877 7888899988
Q ss_pred EecCC
Q 021291 177 WDLNT 181 (314)
Q Consensus 177 wd~~~ 181 (314)
-.+.+
T Consensus 151 ~~L~s 155 (726)
T KOG3621|consen 151 TELDS 155 (726)
T ss_pred EEech
Confidence 87766
No 350
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=97.56 E-value=0.00031 Score=38.81 Aligned_cols=34 Identities=18% Similarity=0.332 Sum_probs=29.9
Q ss_pred CCceeEEEEccCCCEEEEecCCCeEEEEeCCCCeE
Q 021291 18 RASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRT 52 (314)
Q Consensus 18 ~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~ 52 (314)
...|.+++|+|...+||.|+.||.|.|+.+ +++.
T Consensus 11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl-~~qr 44 (47)
T PF12894_consen 11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRL-NWQR 44 (47)
T ss_pred CCcEEEEEECCCCCEEEEEECCCeEEEEEC-CCcC
Confidence 457999999999999999999999999998 4543
No 351
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=97.51 E-value=0.058 Score=47.46 Aligned_cols=69 Identities=23% Similarity=0.203 Sum_probs=43.0
Q ss_pred CEEEEecCCCeEEEEeCCCCeEEEEEeccCCcccEEEEEEcccCCCCeEEEee------cCCeEEEEeCCCCCCCC
Q 021291 31 PILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQG------RDGTVKCWDIENGGLSS 100 (314)
Q Consensus 31 ~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~------~dg~v~iwd~~~~~~~~ 100 (314)
..++.++.|+.|.-.|.++|+.+.......... -..+.-+|...+..++.+. .+|.|.-+|.++++.+.
T Consensus 121 ~~v~v~t~dg~l~ALDa~TGk~~W~~~~~~~~~-~~~~tssP~v~~g~Vivg~~~~~~~~~G~v~AlD~~TG~~lW 195 (527)
T TIGR03075 121 GKVFFGTLDARLVALDAKTGKVVWSKKNGDYKA-GYTITAAPLVVKGKVITGISGGEFGVRGYVTAYDAKTGKLVW 195 (527)
T ss_pred CEEEEEcCCCEEEEEECCCCCEEeecccccccc-cccccCCcEEECCEEEEeecccccCCCcEEEEEECCCCceeE
Confidence 467778899999999999999987765321100 0111111211123455443 26899999999998765
No 352
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=97.49 E-value=0.012 Score=39.09 Aligned_cols=96 Identities=16% Similarity=0.205 Sum_probs=62.2
Q ss_pred eccCCCceEEEeecCcCeEEEEecCCCceeeeecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEeecCCcEEE
Q 021291 156 VPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILV 235 (314)
Q Consensus 156 ~~~~~~~~~~~~g~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~v 235 (314)
|.-+|+.-|+ .|+.|..|++|+- .+.+..+.. ...++++....+ + .++.+..+|+|-+
T Consensus 10 ~d~dg~~eLl-vGs~D~~IRvf~~--~e~~~Ei~e-------------~~~v~~L~~~~~----~--~F~Y~l~NGTVGv 67 (111)
T PF14783_consen 10 FDGDGENELL-VGSDDFEIRVFKG--DEIVAEITE-------------TDKVTSLCSLGG----G--RFAYALANGTVGV 67 (111)
T ss_pred cCCCCcceEE-EecCCcEEEEEeC--CcEEEEEec-------------ccceEEEEEcCC----C--EEEEEecCCEEEE
Confidence 4455656665 5888999999974 356666652 345666652332 2 7999999999999
Q ss_pred EEccCCCCceEeeecCCcceEEEEE-eC--CC-CeEEEecCCCcEE
Q 021291 236 WDIRNPGIPLTAMKVHLEPVLCLSI-DE--SC-NGGISGGADQKIV 277 (314)
Q Consensus 236 wd~~~~~~~~~~~~~h~~~v~~~~~-~~--~~-~~l~s~s~dg~i~ 277 (314)
|+-.. .+...+. ...++++.+ +. +| .-|++|-.+|.|-
T Consensus 68 Y~~~~---RlWRiKS-K~~~~~~~~~D~~gdG~~eLI~GwsnGkve 109 (111)
T PF14783_consen 68 YDRSQ---RLWRIKS-KNQVTSMAFYDINGDGVPELIVGWSNGKVE 109 (111)
T ss_pred EeCcc---eeeeecc-CCCeEEEEEEcCCCCCceEEEEEecCCeEE
Confidence 98642 3444443 333666655 33 33 2488888888874
No 353
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=97.45 E-value=0.00064 Score=50.75 Aligned_cols=103 Identities=17% Similarity=0.095 Sum_probs=68.8
Q ss_pred eecCcCeEEEEecCCCceeeeecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEeecCCcEEEEEccCCCCceE
Q 021291 167 AGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLT 246 (314)
Q Consensus 167 ~g~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~~ 246 (314)
+|+.+|.|++|....... |........-.+.+.-|...++. +..++..||.|+.|++.- .+.+.
T Consensus 75 vG~~dg~v~~~n~n~~g~--------------~~d~~~s~~e~i~~~Ip~~~~~~-~~c~~~~dg~ir~~n~~p-~k~~g 138 (238)
T KOG2444|consen 75 VGTSDGAVYVFNWNLEGA--------------HSDRVCSGEESIDLGIPNGRDSS-LGCVGAQDGRIRACNIKP-NKVLG 138 (238)
T ss_pred eecccceEEEecCCccch--------------HHHhhhcccccceeccccccccc-eeEEeccCCceeeecccc-Cceee
Confidence 466789999998862211 11111111111112334322233 889999999999999986 77777
Q ss_pred eeecCC-cceEEEEEeCCCCeEEEe--cCCCcEEEEecCCCe
Q 021291 247 AMKVHL-EPVLCLSIDESCNGGISG--GADQKIVLYNLDHST 285 (314)
Q Consensus 247 ~~~~h~-~~v~~~~~~~~~~~l~s~--s~dg~i~iw~~~~~~ 285 (314)
....|. .++..+.....+.+|+.+ |.|..++.|+++.-.
T Consensus 139 ~~g~h~~~~~e~~ivv~sd~~i~~a~~S~d~~~k~W~ve~~~ 180 (238)
T KOG2444|consen 139 YVGQHNFESGEELIVVGSDEFLKIADTSHDRVLKKWNVEKIK 180 (238)
T ss_pred eeccccCCCcceeEEecCCceEEeeccccchhhhhcchhhhh
Confidence 777777 677777777777888888 889999999887543
No 354
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=97.37 E-value=0.038 Score=51.42 Aligned_cols=161 Identities=11% Similarity=0.004 Sum_probs=83.4
Q ss_pred CCceeEEEEccCCCEEEEecCCCeEEEEeCC----C-------------------CeEEEEEeccCC-------------
Q 021291 18 RASVTDVCFHQTKPILFAGTTGGELRIWDTV----Q-------------------HRTVSSSWVHSA------------- 61 (314)
Q Consensus 18 ~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~----~-------------------~~~~~~~~~~~~------------- 61 (314)
...|.+++|+||+..++..+.++++.+-.-. . |+.-..+++..+
T Consensus 109 d~GI~aaswS~Dee~l~liT~~~tll~mT~~f~~i~E~~L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~ 188 (1265)
T KOG1920|consen 109 DNGISAASWSPDEELLALITGRQTLLFMTKDFEPIAEKPLDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKA 188 (1265)
T ss_pred cCceEEEeecCCCcEEEEEeCCcEEEEEeccccchhccccccccccccccceecccccceeeecchhhhccccccccccc
Confidence 4689999999999999999888888765421 0 111112221110
Q ss_pred ------cccEEEEEEcccCCCCeEEEee----cC-CeEEEEeCCCCCCCCCCeeeeecceeeEEEeeeeeccccccccCC
Q 021291 62 ------AHGIVSVATGPSIGLNKVISQG----RD-GTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQAN 130 (314)
Q Consensus 62 ------~~~v~~~~~~~~~~~~~l~s~~----~d-g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (314)
.+.=++|+|-- ||++|++.. .+ +.|++||-+ +.+.. .-.-.....+...+.+.+.-.+..-...
T Consensus 189 ~~~~~~~~~~~~IsWRg--Dg~~fAVs~~~~~~~~RkirV~drE-g~Lns--~se~~~~l~~~LsWkPsgs~iA~iq~~~ 263 (1265)
T KOG1920|consen 189 LEQIEQDDHKTSISWRG--DGEYFAVSFVESETGTRKIRVYDRE-GALNS--TSEPVEGLQHSLSWKPSGSLIAAIQCKT 263 (1265)
T ss_pred ccchhhccCCceEEEcc--CCcEEEEEEEeccCCceeEEEeccc-chhhc--ccCcccccccceeecCCCCeEeeeeecC
Confidence 01124588988 999998732 23 789999988 43321 1111112222233333222222222222
Q ss_pred CCcceeeccCCceeeec----CCC----CCCceeccCCCceEEEeecCcCe-EEEEecCCCc
Q 021291 131 EPKDCYEREVGETVDTD----SLC----DSKDDVPAEGPKYMAVAGEQLSE-VEIWDLNTAE 183 (314)
Q Consensus 131 ~~~~~~~~~~~~~~~~~----~~~----~~~~~~~~~~~~~~~~~g~~d~~-i~vwd~~~~~ 183 (314)
+...+.-++.+...... .+. -..++|+.++.-+.+.+....+. |++|-+.+-.
T Consensus 264 sd~~IvffErNGL~hg~f~l~~p~de~~ve~L~Wns~sdiLAv~~~~~e~~~v~lwt~~Nyh 325 (1265)
T KOG1920|consen 264 SDSDIVFFERNGLRHGEFVLPFPLDEKEVEELAWNSNSDILAVVTSNLENSLVQLWTTGNYH 325 (1265)
T ss_pred CCCcEEEEecCCccccccccCCcccccchheeeecCCCCceeeeecccccceEEEEEecCeE
Confidence 22233333332211111 111 11189999987655434333444 9999887643
No 355
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.36 E-value=0.073 Score=45.29 Aligned_cols=50 Identities=22% Similarity=0.315 Sum_probs=39.2
Q ss_pred eEEEEeCCCCeEEEEEeccCCcccEEEEEEcccCCCCeEEEeecCCeEEEEeCCCC
Q 021291 41 ELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENG 96 (314)
Q Consensus 41 ~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~ 96 (314)
.|.||+. .|+.+.++.-.. +.|.++.|+. + ..|+....||++++||+...
T Consensus 62 ~I~iys~-sG~ll~~i~w~~--~~iv~~~wt~--~-e~LvvV~~dG~v~vy~~~G~ 111 (410)
T PF04841_consen 62 SIQIYSS-SGKLLSSIPWDS--GRIVGMGWTD--D-EELVVVQSDGTVRVYDLFGE 111 (410)
T ss_pred EEEEECC-CCCEeEEEEECC--CCEEEEEECC--C-CeEEEEEcCCEEEEEeCCCc
Confidence 5899985 477777776555 4599999988 5 67778889999999998643
No 356
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=97.34 E-value=0.081 Score=45.25 Aligned_cols=201 Identities=15% Similarity=0.130 Sum_probs=104.3
Q ss_pred eeEEEEccCCCEEEEe-cCC----CeEEEEeCCCCeEEEEE-eccCCcccEEEEEEcccCCCCeEEEeecCC--------
Q 021291 21 VTDVCFHQTKPILFAG-TTG----GELRIWDTVQHRTVSSS-WVHSAAHGIVSVATGPSIGLNKVISQGRDG-------- 86 (314)
Q Consensus 21 v~~~~~~~~~~~l~s~-~~d----g~v~iwd~~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg-------- 86 (314)
+...+++|+|++||-+ +.. ..++++|+++++.+... .... -..+.|.+ +++.|+....+.
T Consensus 126 ~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~~~----~~~~~W~~--d~~~~~y~~~~~~~~~~~~~ 199 (414)
T PF02897_consen 126 LGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIENPK----FSSVSWSD--DGKGFFYTRFDEDQRTSDSG 199 (414)
T ss_dssp EEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEEEE----SEEEEECT--TSSEEEEEECSTTTSS-CCG
T ss_pred eeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCcccccc----cceEEEeC--CCCEEEEEEeCcccccccCC
Confidence 3467899999988754 333 46999999999776532 2221 23499999 877766554332
Q ss_pred ---eEEEEeCCCCCCCCCCeeeeecceeeEEEeeeeeccccccccCCCCcceeeccCCceeeecCCCCCCceeccCCCce
Q 021291 87 ---TVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKY 163 (314)
Q Consensus 87 ---~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (314)
.|..|++.+.......++........... +..+++++.+
T Consensus 200 ~~~~v~~~~~gt~~~~d~lvfe~~~~~~~~~~--------------------------------------~~~s~d~~~l 241 (414)
T PF02897_consen 200 YPRQVYRHKLGTPQSEDELVFEEPDEPFWFVS--------------------------------------VSRSKDGRYL 241 (414)
T ss_dssp CCEEEEEEETTS-GGG-EEEEC-TTCTTSEEE--------------------------------------EEE-TTSSEE
T ss_pred CCcEEEEEECCCChHhCeeEEeecCCCcEEEE--------------------------------------EEecCcccEE
Confidence 37777776654321112222221110000 4477888887
Q ss_pred EEEeecC-c-CeEEEEecCCC----ceeeeecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEe--ecCCcEEE
Q 021291 164 MAVAGEQ-L-SEVEIWDLNTA----ERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAG--YEDGSILV 235 (314)
Q Consensus 164 ~~~~g~~-d-~~i~vwd~~~~----~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g--~~dg~i~v 235 (314)
++.+.+. + ..+.+.|+..+ .....+.. . ..+....+. .. . +.+++.+. ..++.|.-
T Consensus 242 ~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~--------~---~~~~~~~v~-~~-~---~~~yi~Tn~~a~~~~l~~ 305 (414)
T PF02897_consen 242 FISSSSGTSESEVYLLDLDDGGSPDAKPKLLSP--------R---EDGVEYYVD-HH-G---DRLYILTNDDAPNGRLVA 305 (414)
T ss_dssp EEEEESSSSEEEEEEEECCCTTTSS-SEEEEEE--------S---SSS-EEEEE-EE-T---TEEEEEE-TT-TT-EEEE
T ss_pred EEEEEccccCCeEEEEeccccCCCcCCcEEEeC--------C---CCceEEEEE-cc-C---CEEEEeeCCCCCCcEEEE
Confidence 7655443 2 46888888874 22222221 1 122222222 22 1 33344443 23466777
Q ss_pred EEccCCCC--ceEeeecCCc--ceEEEEEeCCCCeEEEecCCC--cEEEEecC
Q 021291 236 WDIRNPGI--PLTAMKVHLE--PVLCLSIDESCNGGISGGADQ--KIVLYNLD 282 (314)
Q Consensus 236 wd~~~~~~--~~~~~~~h~~--~v~~~~~~~~~~~l~s~s~dg--~i~iw~~~ 282 (314)
.++..+.. ....+-.+.. .+..+....+. +++..-.++ .|+++++.
T Consensus 306 ~~l~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~-Lvl~~~~~~~~~l~v~~~~ 357 (414)
T PF02897_consen 306 VDLADPSPAEWWTVLIPEDEDVSLEDVSLFKDY-LVLSYRENGSSRLRVYDLD 357 (414)
T ss_dssp EETTSTSGGGEEEEEE--SSSEEEEEEEEETTE-EEEEEEETTEEEEEEEETT
T ss_pred ecccccccccceeEEcCCCCceeEEEEEEECCE-EEEEEEECCccEEEEEECC
Confidence 78776332 1224555555 45556555443 344444554 58888988
No 357
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=97.34 E-value=0.097 Score=46.13 Aligned_cols=66 Identities=14% Similarity=0.099 Sum_probs=47.1
Q ss_pred CCEEEEecCCCeEEEEeCCCCeEEEEEeccCCcccEE---E-------EEEcccCCCCeEEEeecCCeEEEEeCCCCCCC
Q 021291 30 KPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIV---S-------VATGPSIGLNKVISQGRDGTVKCWDIENGGLS 99 (314)
Q Consensus 30 ~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~---~-------~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~ 99 (314)
+..|+.++.++.|.-.|..+|+.+..+..... ..+. + +++. +..++.++.|+.|.-.|.++++.+
T Consensus 69 ~g~vyv~s~~g~v~AlDa~TGk~lW~~~~~~~-~~~~~~~~~~~~~rg~av~----~~~v~v~t~dg~l~ALDa~TGk~~ 143 (527)
T TIGR03075 69 DGVMYVTTSYSRVYALDAKTGKELWKYDPKLP-DDVIPVMCCDVVNRGVALY----DGKVFFGTLDARLVALDAKTGKVV 143 (527)
T ss_pred CCEEEEECCCCcEEEEECCCCceeeEecCCCC-cccccccccccccccceEE----CCEEEEEcCCCEEEEEECCCCCEE
Confidence 45777788889999999999999887754221 1111 1 2222 256778888999999999999876
Q ss_pred C
Q 021291 100 S 100 (314)
Q Consensus 100 ~ 100 (314)
.
T Consensus 144 W 144 (527)
T TIGR03075 144 W 144 (527)
T ss_pred e
Confidence 5
No 358
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.32 E-value=0.016 Score=51.78 Aligned_cols=117 Identities=14% Similarity=0.238 Sum_probs=65.5
Q ss_pred cCCCceEEEeecCcC----eEEEEecCCC------ceeeeecccccCCCCCcCCCC-CceeeeEEEecCCCCCCceEEEE
Q 021291 158 AEGPKYMAVAGEQLS----EVEIWDLNTA------ERCTRLHQNSCGGSPNFSSKG-RGMCMAVQAYLPSKSQGFVNVLA 226 (314)
Q Consensus 158 ~~~~~~~~~~g~~d~----~i~vwd~~~~------~~~~~~~~~~~~~~~~h~~~~-~~~~~~~~~~~p~~~~g~~~l~~ 226 (314)
-+++.++++.|..++ .|++||+... .++..... ..|..+. ..++.+++ .+.+ -. .+|+
T Consensus 74 ~~~~~~L~sv~Ed~~~np~llkiw~lek~~~n~sP~c~~~~ri------~~~~np~~~~p~s~l~-Vs~~---l~-~Iv~ 142 (933)
T KOG2114|consen 74 LNKQNFLFSVGEDEQGNPVLLKIWDLEKVDKNNSPQCLYEHRI------FTIKNPTNPSPASSLA-VSED---LK-TIVC 142 (933)
T ss_pred ccCceEEEEEeecCCCCceEEEEecccccCCCCCcceeeeeee------eccCCCCCCCcceEEE-EEcc---cc-EEEE
Confidence 344455655555444 6999998743 12211110 0333332 23344444 6655 22 8999
Q ss_pred eecCCcEEEEEcc---CCCCceEeeecCCcceEEEEEeCCCCeEEEecCCCcEEEEecCCCe
Q 021291 227 GYEDGSILVWDIR---NPGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHST 285 (314)
Q Consensus 227 g~~dg~i~vwd~~---~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~iw~~~~~~ 285 (314)
|..||.|..+.-+ ..+....-...-.++|+.+++..++..++-+..-..|.+|.+....
T Consensus 143 Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~~~~d~~s~lFv~Tt~~V~~y~l~gr~ 204 (933)
T KOG2114|consen 143 GFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGLALRSDGKSVLFVATTEQVMLYSLSGRT 204 (933)
T ss_pred EecCcEEEEEcCcchhccccceeeeccCCCCceeeEEecCCceeEEEEecceeEEEEecCCC
Confidence 9999999998643 2122222222346799999997666652222234568888887444
No 359
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=97.32 E-value=0.017 Score=44.30 Aligned_cols=114 Identities=16% Similarity=0.074 Sum_probs=80.5
Q ss_pred ceeccCCCceEEEeecCcCeEEEEecCCCceeeeecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEeecCCcE
Q 021291 154 DDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSI 233 (314)
Q Consensus 154 ~~~~~~~~~~~~~~g~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i 233 (314)
+...++.+.+++ .|+..+.+.--|..+++..-.-.. + .+....++ .- |. +++.|+..|.+
T Consensus 16 LVV~~dskT~v~-igSHs~~~~avd~~sG~~~We~il-------g----~RiE~sa~--vv-----gd-fVV~GCy~g~l 75 (354)
T KOG4649|consen 16 LVVCNDSKTLVV-IGSHSGIVIAVDPQSGNLIWEAIL-------G----VRIECSAI--VV-----GD-FVVLGCYSGGL 75 (354)
T ss_pred EEEecCCceEEE-EecCCceEEEecCCCCcEEeehhh-------C----ceeeeeeE--EE-----CC-EEEEEEccCcE
Confidence 445566665554 688889999999999987654331 1 11111111 22 33 79999999999
Q ss_pred EEEEccCCCCceEeeecCCcceE-EEEEeCCCCeEEEecCCCcEEEEecCCCeeeEe
Q 021291 234 LVWDIRNPGIPLTAMKVHLEPVL-CLSIDESCNGGISGGADQKIVLYNLDHSTYVLF 289 (314)
Q Consensus 234 ~vwd~~~~~~~~~~~~~h~~~v~-~~~~~~~~~~l~s~s~dg~i~iw~~~~~~~~~~ 289 (314)
++.+.++ +.....+..- +.|. ....++++..+..|+.|+..+.-|..+...++.
T Consensus 76 Yfl~~~t-Gs~~w~f~~~-~~vk~~a~~d~~~glIycgshd~~~yalD~~~~~cVyk 130 (354)
T KOG4649|consen 76 YFLCVKT-GSQIWNFVIL-ETVKVRAQCDFDGGLIYCGSHDGNFYALDPKTYGCVYK 130 (354)
T ss_pred EEEEecc-hhheeeeeeh-hhhccceEEcCCCceEEEecCCCcEEEecccccceEEe
Confidence 9999998 7666666543 3333 334578888999999999999999999998886
No 360
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=97.29 E-value=0.054 Score=42.28 Aligned_cols=186 Identities=11% Similarity=0.089 Sum_probs=103.8
Q ss_pred ceeEEEEccCCCEEEEecCCC--eEEEEeCCCCeEEEEEeccCCcccEEEEEEcccCCCCeEEEeecCCeEEEEeCCCCC
Q 021291 20 SVTDVCFHQTKPILFAGTTGG--ELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGG 97 (314)
Q Consensus 20 ~v~~~~~~~~~~~l~s~~~dg--~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~ 97 (314)
-...+.|..+|.++-+.+.-| .|+.+|+.+++.+........ -.-..++... + ....-.=.++...+||..+.+
T Consensus 46 FTQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~-~FgEGit~~~--d-~l~qLTWk~~~~f~yd~~tl~ 121 (264)
T PF05096_consen 46 FTQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPR-YFGEGITILG--D-KLYQLTWKEGTGFVYDPNTLK 121 (264)
T ss_dssp EEEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT---EEEEEEET--T-EEEEEESSSSEEEEEETTTTE
T ss_pred cCccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCcc-ccceeEEEEC--C-EEEEEEecCCeEEEEccccce
Confidence 345688877888888877766 799999999988776654431 1234455544 3 444455568899999998765
Q ss_pred CCCCCeeeeecceeeEEEeeeeeccccccccCCCCcceeeccCCceeeecCCCCCCceeccCCCceEEEeecCcCeEEEE
Q 021291 98 LSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQLSEVEIW 177 (314)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~vw 177 (314)
.+. .+......- -+..+++.++++-|+ ..|+++
T Consensus 122 ~~~--~~~y~~EGW-------------------------------------------GLt~dg~~Li~SDGS--~~L~~~ 154 (264)
T PF05096_consen 122 KIG--TFPYPGEGW-------------------------------------------GLTSDGKRLIMSDGS--SRLYFL 154 (264)
T ss_dssp EEE--EEE-SSS---------------------------------------------EEEECSSCEEEE-SS--SEEEEE
T ss_pred EEE--EEecCCcce-------------------------------------------EEEcCCCEEEEECCc--cceEEE
Confidence 433 222221111 133667778775555 689999
Q ss_pred ecCCCceeeeecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEeecCCcEEEEEccCCCCceEeeec-------
Q 021291 178 DLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKV------- 250 (314)
Q Consensus 178 d~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~------- 250 (314)
|..+.+....+.... . ...-..+.-+- |- + |. +.|-.-....|...|..+ ++++..+..
T Consensus 155 dP~~f~~~~~i~V~~------~-g~pv~~LNELE-~i-~---G~-IyANVW~td~I~~Idp~t-G~V~~~iDls~L~~~~ 220 (264)
T PF05096_consen 155 DPETFKEVRTIQVTD------N-GRPVSNLNELE-YI-N---GK-IYANVWQTDRIVRIDPET-GKVVGWIDLSGLRPEV 220 (264)
T ss_dssp -TTT-SEEEEEE-EE------T-TEE---EEEEE-EE-T---TE-EEEEETTSSEEEEEETTT--BEEEEEE-HHHHHHH
T ss_pred CCcccceEEEEEEEE------C-CEECCCcEeEE-EE-c---CE-EEEEeCCCCeEEEEeCCC-CeEEEEEEhhHhhhcc
Confidence 999887776665211 0 00111223333 33 1 32 444444455566667776 665554421
Q ss_pred --------CCcceEEEEEeCCCCe-EEEe
Q 021291 251 --------HLEPVLCLSIDESCNG-GISG 270 (314)
Q Consensus 251 --------h~~~v~~~~~~~~~~~-l~s~ 270 (314)
-.+-.+.++++|.... ++||
T Consensus 221 ~~~~~~~~~~dVLNGIAyd~~~~~l~vTG 249 (264)
T PF05096_consen 221 GRDKSRQPDDDVLNGIAYDPETDRLFVTG 249 (264)
T ss_dssp TSTTST--TTS-EEEEEEETTTTEEEEEE
T ss_pred cccccccccCCeeEeEeEeCCCCEEEEEe
Confidence 1345789999876654 4665
No 361
>PHA02713 hypothetical protein; Provisional
Probab=97.23 E-value=0.036 Score=49.18 Aligned_cols=66 Identities=6% Similarity=-0.097 Sum_probs=37.9
Q ss_pred CceEEEEeecC------CcEEEEEccC--CCCceEeeecCCcceEEEEEeCCCCeEEEecCCC--cEEEEecCCCeeeE
Q 021291 220 GFVNVLAGYED------GSILVWDIRN--PGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQ--KIVLYNLDHSTYVL 288 (314)
Q Consensus 220 g~~~l~~g~~d------g~i~vwd~~~--~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg--~i~iw~~~~~~~~~ 288 (314)
|+ +.+.|+.+ ..+..||..+ ....+..+.........+.+ +++..++|+.|+ .+..||..+.+-..
T Consensus 464 ~~-IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r~~~~~~~~--~~~iyv~Gg~~~~~~~e~yd~~~~~W~~ 539 (557)
T PHA02713 464 DD-IYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRLSALHTILH--DNTIMMLHCYESYMLQDTFNVYTYEWNH 539 (557)
T ss_pred CE-EEEEeCCCCCCccceeEEEecCCCCCCeeEccccCcccccceeEEE--CCEEEEEeeecceeehhhcCcccccccc
Confidence 44 55556543 2467888875 22333334332222222332 556788999888 77888888776543
No 362
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=97.22 E-value=0.1 Score=44.02 Aligned_cols=181 Identities=14% Similarity=0.125 Sum_probs=111.0
Q ss_pred ceeEEEEccCCCEEEEecC---CCeEEEEeCCCCeEEEEEeccCCcccEEEEEEcccCCCCeEEEee-cCCeEEEEeCCC
Q 021291 20 SVTDVCFHQTKPILFAGTT---GGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQG-RDGTVKCWDIEN 95 (314)
Q Consensus 20 ~v~~~~~~~~~~~l~s~~~---dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~-~dg~v~iwd~~~ 95 (314)
.-..++++++++.+..+.. ++++.+.|..+.+.......-. .+ ..+++.| +++.++.+. .++.|.+.|...
T Consensus 117 ~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~~~vG~--~P-~~~a~~p--~g~~vyv~~~~~~~v~vi~~~~ 191 (381)
T COG3391 117 GPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTATIPVGN--TP-TGVAVDP--DGNKVYVTNSDDNTVSVIDTSG 191 (381)
T ss_pred CCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEEEEecCC--Cc-ceEEECC--CCCeEEEEecCCCeEEEEeCCC
Confidence 4457889998877665544 7899999999888887754333 33 8999999 988766555 788999999776
Q ss_pred CCCCC-CCeeeeecceeeEEEeeeeeccccccccCCCCcceeeccCCceeeecCCCCCCceeccCCCceEEEeec-CcCe
Q 021291 96 GGLSS-NPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGE-QLSE 173 (314)
Q Consensus 96 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-~d~~ 173 (314)
..... .+....... .....+.++++|.++.++-.. .++.
T Consensus 192 ~~v~~~~~~~~~~~~---------------------------------------~~P~~i~v~~~g~~~yV~~~~~~~~~ 232 (381)
T COG3391 192 NSVVRGSVGSLVGVG---------------------------------------TGPAGIAVDPDGNRVYVANDGSGSNN 232 (381)
T ss_pred cceeccccccccccC---------------------------------------CCCceEEECCCCCEEEEEeccCCCce
Confidence 54321 000000000 011116688999877664333 2368
Q ss_pred EEEEecCCCceeee-ecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEe-ecCCcEEEEEccCCCCceEeeecC
Q 021291 174 VEIWDLNTAERCTR-LHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAG-YEDGSILVWDIRNPGIPLTAMKVH 251 (314)
Q Consensus 174 i~vwd~~~~~~~~~-~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g-~~dg~i~vwd~~~~~~~~~~~~~h 251 (314)
+...|..++..... ... - .. ....+. ..|+ |. .+.+. ...+.+.+-|..+ ..........
T Consensus 233 v~~id~~~~~v~~~~~~~--------~---~~-~~~~v~-~~p~---g~-~~yv~~~~~~~V~vid~~~-~~v~~~~~~~ 294 (381)
T COG3391 233 VLKIDTATGNVTATDLPV--------G---SG-APRGVA-VDPA---GK-AAYVANSQGGTVSVIDGAT-DRVVKTGPTG 294 (381)
T ss_pred EEEEeCCCceEEEecccc--------c---cC-CCCcee-ECCC---CC-EEEEEecCCCeEEEEeCCC-Cceeeeeccc
Confidence 99999988776654 221 0 11 233344 8887 55 44444 4558899999887 5555544432
Q ss_pred Cc---ceEEEEEeC
Q 021291 252 LE---PVLCLSIDE 262 (314)
Q Consensus 252 ~~---~v~~~~~~~ 262 (314)
.. .+..+++.+
T Consensus 295 ~~~~~~~~~~~~~~ 308 (381)
T COG3391 295 NEALGEPVSIAISP 308 (381)
T ss_pred ccccccceecccee
Confidence 22 345555543
No 363
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=97.21 E-value=0.092 Score=43.39 Aligned_cols=259 Identities=15% Similarity=0.081 Sum_probs=108.5
Q ss_pred CCCCCceEEecCCCCceeE-----EEEccCCCEEEE-ecCCC--eEEEEeCCCCeEEEEEeccCCcccEEEEEEcccCCC
Q 021291 5 PPPPDPVAVLRGHRASVTD-----VCFHQTKPILFA-GTTGG--ELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGL 76 (314)
Q Consensus 5 ~~~~~~~~~l~~h~~~v~~-----~~~~~~~~~l~s-~~~dg--~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 76 (314)
|..+..+..|..+...... =+|.+||+.|+- +..|| .+.+.|+.+++..+--.+... ......++| +.
T Consensus 17 ~~TG~~VtrLT~~~~~~h~~YF~~~~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~QLTdg~g~--~~~g~~~s~--~~ 92 (386)
T PF14583_consen 17 PDTGHRVTRLTPPDGHSHRLYFYQNCFTDDGRKLLFASDFDGNRNLYLLDLATGEITQLTDGPGD--NTFGGFLSP--DD 92 (386)
T ss_dssp TTT--EEEE-S-TTS-EE---TTS--B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE---SS-B---TTT-EE-T--TS
T ss_pred CCCCceEEEecCCCCcccceeecCCCcCCCCCEEEEEeccCCCcceEEEEcccCEEEECccCCCC--CccceEEec--CC
Confidence 3444555555543332222 356778866554 44444 677788888877665544322 133556667 66
Q ss_pred CeEEEeecCCeEEEEeCCCCCCCCCCeeeeecceeeEEEeeeeeccccccccCCCCcceeeccCCceeeecCCCCCCcee
Q 021291 77 NKVISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDV 156 (314)
Q Consensus 77 ~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (314)
+.++-...+..|+--|+++.+... ++.+...-.....+.+.... ....-..+... ....- -.+
T Consensus 93 ~~~~Yv~~~~~l~~vdL~T~e~~~--vy~~p~~~~g~gt~v~n~d~--------t~~~g~e~~~~-----d~~~l--~~~ 155 (386)
T PF14583_consen 93 RALYYVKNGRSLRRVDLDTLEERV--VYEVPDDWKGYGTWVANSDC--------TKLVGIEISRE-----DWKPL--TKW 155 (386)
T ss_dssp SEEEEEETTTEEEEEETTT--EEE--EEE--TTEEEEEEEEE-TTS--------SEEEEEEEEGG-----G-------SH
T ss_pred CeEEEEECCCeEEEEECCcCcEEE--EEECCcccccccceeeCCCc--------cEEEEEEEeeh-----hccCc--ccc
Confidence 777666666789999999876422 55554443322222111100 00000000000 00000 001
Q ss_pred ccCCCceEEEeecCcCeEEEEecCCCceeeeecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEeec---CCc-
Q 021291 157 PAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYE---DGS- 232 (314)
Q Consensus 157 ~~~~~~~~~~~g~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~---dg~- 232 (314)
....+.+. ......|.-.|+++++....+.. ....--+. |+|..+. +|+-|.+ +..
T Consensus 156 ~~f~e~~~---a~p~~~i~~idl~tG~~~~v~~~-------------~~wlgH~~-fsP~dp~---li~fCHEGpw~~Vd 215 (386)
T PF14583_consen 156 KGFREFYE---ARPHCRIFTIDLKTGERKVVFED-------------TDWLGHVQ-FSPTDPT---LIMFCHEGPWDLVD 215 (386)
T ss_dssp HHHHHHHH---C---EEEEEEETTT--EEEEEEE-------------SS-EEEEE-EETTEEE---EEEEEE-S-TTTSS
T ss_pred HHHHHHHh---hCCCceEEEEECCCCceeEEEec-------------CccccCcc-cCCCCCC---EEEEeccCCcceec
Confidence 00011111 11235677888898887666652 33555666 9998542 5555433 222
Q ss_pred EEEEEccCCCCceEeeecCCc--ceEEEEEeCCCCeEEE-----ecCCCcEEEEecCCCeeeEe-----eeeeeecCCCc
Q 021291 233 ILVWDIRNPGIPLTAMKVHLE--PVLCLSIDESCNGGIS-----GGADQKIVLYNLDHSTYVLF-----GIGFVCDQEGN 300 (314)
Q Consensus 233 i~vwd~~~~~~~~~~~~~h~~--~v~~~~~~~~~~~l~s-----~s~dg~i~iw~~~~~~~~~~-----~~~~~~~~~~~ 300 (314)
-+||-++..+.....+..|.. .+..=-|.++|..|.- ++.+..|.-+|+.+++.... ..-+..+++|.
T Consensus 216 ~RiW~i~~dg~~~~~v~~~~~~e~~gHEfw~~DG~~i~y~~~~~~~~~~~i~~~d~~t~~~~~~~~~p~~~H~~ss~Dg~ 295 (386)
T PF14583_consen 216 QRIWTINTDGSNVKKVHRRMEGESVGHEFWVPDGSTIWYDSYTPGGQDFWIAGYDPDTGERRRLMEMPWCSHFMSSPDGK 295 (386)
T ss_dssp -SEEEEETTS---EESS---TTEEEEEEEE-TTSS-EEEEEEETTT--EEEEEE-TTT--EEEEEEE-SEEEEEE-TTSS
T ss_pred eEEEEEEcCCCcceeeecCCCCcccccccccCCCCEEEEEeecCCCCceEEEeeCCCCCCceEEEeCCceeeeEEcCCCC
Confidence 377877665555555544432 3334456888887643 23355677788887764332 23344557776
Q ss_pred eece
Q 021291 301 KFGT 304 (314)
Q Consensus 301 ~~~~ 304 (314)
.|+.
T Consensus 296 L~vG 299 (386)
T PF14583_consen 296 LFVG 299 (386)
T ss_dssp EEEE
T ss_pred EEEe
Confidence 6643
No 364
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.17 E-value=0.077 Score=41.72 Aligned_cols=186 Identities=12% Similarity=0.117 Sum_probs=105.9
Q ss_pred CCCCceeEEEEccCCCEEEEecCCCeEEEEeCCCCeEEEEEeccCCcccEEEEEEcccCCCCeEEEeecCCeEEEEeCCC
Q 021291 16 GHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIEN 95 (314)
Q Consensus 16 ~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~ 95 (314)
|-...|.++.|+|+.+.|++......-.|+=..+|+.+.++....- .--..|.|.. ++.+.++--.++.+.++.+..
T Consensus 83 g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~-~DpE~Ieyig--~n~fvi~dER~~~l~~~~vd~ 159 (316)
T COG3204 83 GETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGF-SDPETIEYIG--GNQFVIVDERDRALYLFTVDA 159 (316)
T ss_pred cccccccceeeCCCcceEEEecCCCceEEEEecCCceEEEeccccc-CChhHeEEec--CCEEEEEehhcceEEEEEEcC
Confidence 4455699999999999898888888877887788999988754321 1245677777 767777777788888887765
Q ss_pred CCCCCCCeeeeecceeeEEEeeeeeccccccccCCCCcceeeccCCceeeecCCCCCCceeccCCCceEEEeecCcCeEE
Q 021291 96 GGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQLSEVE 175 (314)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~ 175 (314)
.... ...... .+..... ...-.+..+++|.|.+..++++ -. -.-+.
T Consensus 160 ~t~~----~~~~~~-----~i~L~~~-----------------------~k~N~GfEGlA~d~~~~~l~~a-KE-r~P~~ 205 (316)
T COG3204 160 DTTV----ISAKVQ-----KIPLGTT-----------------------NKKNKGFEGLAWDPVDHRLFVA-KE-RNPIG 205 (316)
T ss_pred CccE----Eeccce-----EEecccc-----------------------CCCCcCceeeecCCCCceEEEE-Ec-cCCcE
Confidence 5321 111111 0110000 0001122228899998888763 33 34466
Q ss_pred EEecCCCceeeeecccccCCCCCcCCCC---CceeeeEEEecCCCCCCceEEEEeecCCcEEEEEccCCCCceEeee
Q 021291 176 IWDLNTAERCTRLHQNSCGGSPNFSSKG---RGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMK 249 (314)
Q Consensus 176 vwd~~~~~~~~~~~~~~~~~~~~h~~~~---~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~~~~~ 249 (314)
||.............. ..+.... -.-+.++. |++. .+. +++-+.+++.+.-.|.. +.++..+.
T Consensus 206 I~~~~~~~~~l~~~~~-----~~~~~~~~~f~~DvSgl~-~~~~--~~~-LLVLS~ESr~l~Evd~~--G~~~~~ls 271 (316)
T COG3204 206 IFEVTQSPSSLSVHAS-----LDPTADRDLFVLDVSGLE-FNAI--TNS-LLVLSDESRRLLEVDLS--GEVIELLS 271 (316)
T ss_pred EEEEecCCcccccccc-----cCcccccceEeeccccce-ecCC--CCc-EEEEecCCceEEEEecC--CCeeeeEE
Confidence 6655432211111100 0111100 01233444 6654 233 78888888888888877 55555544
No 365
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=97.12 E-value=0.1 Score=44.65 Aligned_cols=57 Identities=12% Similarity=0.052 Sum_probs=37.2
Q ss_pred EEEEeecCCcEEEEEccCCCCceEeeecCCcceEEEEEeCCCCeEEEecCCCcEEEEecCCC
Q 021291 223 NVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHS 284 (314)
Q Consensus 223 ~l~~g~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~iw~~~~~ 284 (314)
+|...+ ++.|.+||..+ ++.+..+... +|..+.|++++.+++-.+.+ .+.|++.+..
T Consensus 119 LL~~~~-~~~i~~yDw~~-~~~i~~i~v~--~vk~V~Ws~~g~~val~t~~-~i~il~~~~~ 175 (443)
T PF04053_consen 119 LLGVKS-SDFICFYDWET-GKLIRRIDVS--AVKYVIWSDDGELVALVTKD-SIYILKYNLE 175 (443)
T ss_dssp SEEEEE-TTEEEEE-TTT---EEEEESS---E-EEEEE-TTSSEEEEE-S--SEEEEEE-HH
T ss_pred EEEEEC-CCCEEEEEhhH-cceeeEEecC--CCcEEEEECCCCEEEEEeCC-eEEEEEecch
Confidence 455544 44899999998 8888888743 48999999999999888766 6888776544
No 366
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=97.11 E-value=0.0017 Score=35.83 Aligned_cols=36 Identities=19% Similarity=0.261 Sum_probs=31.1
Q ss_pred CcceEEEEEeCCCCeEEEecCCCcEEEEecCCCeeeE
Q 021291 252 LEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTYVL 288 (314)
Q Consensus 252 ~~~v~~~~~~~~~~~l~s~s~dg~i~iw~~~~~~~~~ 288 (314)
...|..++|+|...+||.+..||.|.++.+ ++++++
T Consensus 11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl-~~qriw 46 (47)
T PF12894_consen 11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRL-NWQRIW 46 (47)
T ss_pred CCcEEEEEECCCCCEEEEEECCCeEEEEEC-CCcCcc
Confidence 457999999999999999999999999999 555543
No 367
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=97.08 E-value=0.14 Score=42.90 Aligned_cols=222 Identities=12% Similarity=0.020 Sum_probs=93.8
Q ss_pred CCCCCCceEEecC---CC----CceeEEEEccCCCEEEEec------CCCeEEEEeCCCCeEEEEEeccCC-cccEEEEE
Q 021291 4 RPPPPDPVAVLRG---HR----ASVTDVCFHQTKPILFAGT------TGGELRIWDTVQHRTVSSSWVHSA-AHGIVSVA 69 (314)
Q Consensus 4 ~~~~~~~~~~l~~---h~----~~v~~~~~~~~~~~l~s~~------~dg~v~iwd~~~~~~~~~~~~~~~-~~~v~~~~ 69 (314)
.|..++..++++. +. ..-..+-.-|+|++++|+- .-|-+.+.|-++.+.+........ ...-+.+-
T Consensus 108 dPr~P~l~KvIe~~ev~~k~g~s~PHT~Hclp~G~imIS~lGd~~G~g~Ggf~llD~~tf~v~g~We~~~~~~~~gYDfw 187 (461)
T PF05694_consen 108 DPRKPRLHKVIEPEEVFEKTGLSRPHTVHCLPDGRIMISALGDADGNGPGGFVLLDGETFEVKGRWEKDRGPQPFGYDFW 187 (461)
T ss_dssp -TTS-EEEEEE-HHHHHHHH-EEEEEEEEE-SS--EEEEEEEETTS-S--EEEEE-TTT--EEEE--SB-TT------EE
T ss_pred CCCCCceEeeeCHHHHHhhcCCCCCceeeecCCccEEEEeccCCCCCCCCcEEEEcCccccccceeccCCCCCCCCCCeE
Confidence 3455566666664 21 1111222336888888752 235688999887777776655332 23356778
Q ss_pred EcccCCCCeEEEeec--------------------CCeEEEEeCCCCCCCCCCeeeeecceeeEEEeeeeeccccccccC
Q 021291 70 TGPSIGLNKVISQGR--------------------DGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQA 129 (314)
Q Consensus 70 ~~~~~~~~~l~s~~~--------------------dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (314)
|.| ..+.++|... ..++.+||+.+.+.++ ++.........+.+-+
T Consensus 188 ~qp--r~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~~Q----~idLg~~g~~pLEvRf--------- 252 (461)
T PF05694_consen 188 YQP--RHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKLLQ----TIDLGEEGQMPLEVRF--------- 252 (461)
T ss_dssp EET--TTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTEEEE----EEES-TTEEEEEEEEE---------
T ss_pred EcC--CCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCcEee----EEecCCCCCceEEEEe---------
Confidence 888 6678887653 3579999999987654 3333222222222111
Q ss_pred CCCcceeeccCCceeeecCCCCCCceeccCCCceEEEeecCcCeEEEEec-CCCc----eeeeecccc-cCCCC----Cc
Q 021291 130 NEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQLSEVEIWDL-NTAE----RCTRLHQNS-CGGSP----NF 199 (314)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~vwd~-~~~~----~~~~~~~~~-~~~~~----~h 199 (314)
...|+..+-++.+.- ..+|..|-- ..++ .+..+.... ..... .-
T Consensus 253 -------------------------lH~P~~~~gFvg~aL-ss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp~ml~~ 306 (461)
T PF05694_consen 253 -------------------------LHDPDANYGFVGCAL-SSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWILPEMLKP 306 (461)
T ss_dssp --------------------------SSTT--EEEEEEE---EEEEEEEE-ETTEEEEEEEEEE--EE--SS---GGGGG
T ss_pred -------------------------cCCCCccceEEEEec-cceEEEEEEcCCCCeeeeEEEECCCcccCcccccccccc
Confidence 123444443433332 344444432 3332 122222100 00000 00
Q ss_pred CCCCCceeeeEEEecCCCCCCceEEEEeecCCcEEEEEccCCCCceEeeecC------------------CcceEEEEEe
Q 021291 200 SSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVH------------------LEPVLCLSID 261 (314)
Q Consensus 200 ~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~h------------------~~~v~~~~~~ 261 (314)
.......++.+. .+.| ++++.++.-..|.|+.||+..+.++...-+.. .+...-|..|
T Consensus 307 ~~~~P~LitDI~-iSlD---DrfLYvs~W~~GdvrqYDISDP~~Pkl~gqv~lGG~~~~~~~~~v~g~~l~GgPqMvqlS 382 (461)
T PF05694_consen 307 FGAVPPLITDIL-ISLD---DRFLYVSNWLHGDVRQYDISDPFNPKLVGQVFLGGSIRKGDHPVVKGKRLRGGPQMVQLS 382 (461)
T ss_dssp G-EE------EE-E-TT---S-EEEEEETTTTEEEEEE-SSTTS-EEEEEEE-BTTTT-B--TTS------S----EEE-
T ss_pred cccCCCceEeEE-EccC---CCEEEEEcccCCcEEEEecCCCCCCcEEeEEEECcEeccCCCccccccccCCCCCeEEEc
Confidence 000135678887 8887 66567778889999999999877665443211 1123567778
Q ss_pred CCCCeEEEe
Q 021291 262 ESCNGGISG 270 (314)
Q Consensus 262 ~~~~~l~s~ 270 (314)
-||+.|...
T Consensus 383 ~DGkRlYvT 391 (461)
T PF05694_consen 383 LDGKRLYVT 391 (461)
T ss_dssp TTSSEEEEE
T ss_pred cCCeEEEEE
Confidence 888877443
No 368
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=97.06 E-value=0.12 Score=41.91 Aligned_cols=194 Identities=12% Similarity=0.070 Sum_probs=105.5
Q ss_pred eEEEEccCCCEEEEe--cCCCeEEEEeCCCCeEEEEEeccCCcccEEEEEEcccCCCCeEEEeecCCeEEEEeCCC-CCC
Q 021291 22 TDVCFHQTKPILFAG--TTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIEN-GGL 98 (314)
Q Consensus 22 ~~~~~~~~~~~l~s~--~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~-~~~ 98 (314)
..++++.||++++.. +---.|.|-|+..++.+..+.... ...+--++ + ..|.+.+.||++.-..+.. ++.
T Consensus 98 ~~~~ls~dgk~~~V~N~TPa~SVtVVDl~~~kvv~ei~~PG----C~~iyP~~--~-~~F~~lC~DGsl~~v~Ld~~Gk~ 170 (342)
T PF06433_consen 98 NMFALSADGKFLYVQNFTPATSVTVVDLAAKKVVGEIDTPG----CWLIYPSG--N-RGFSMLCGDGSLLTVTLDADGKE 170 (342)
T ss_dssp GGEEE-TTSSEEEEEEESSSEEEEEEETTTTEEEEEEEGTS----EEEEEEEE--T-TEEEEEETTSCEEEEEETSTSSE
T ss_pred cceEEccCCcEEEEEccCCCCeEEEEECCCCceeeeecCCC----EEEEEecC--C-CceEEEecCCceEEEEECCCCCE
Confidence 456888899887764 445679999999999988887654 33333233 3 5688889999999999874 332
Q ss_pred CCCCeeeeecceeeEEEeeeeecccc------------ccccCCCCcceeeccCCce-ee---ecC----------C-CC
Q 021291 99 SSNPSLTIKTNSYHFCKLSLVKEPYA------------NAKQANEPKDCYEREVGET-VD---TDS----------L-CD 151 (314)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~-~~---~~~----------~-~~ 151 (314)
.. . ....|.....+.. ......+.....++..... .. ..+ + +-
T Consensus 171 ~~----~------~t~~F~~~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~ 240 (342)
T PF06433_consen 171 AQ----K------STKVFDPDDDPLFEHPAYSRDGGRLYFVSYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGW 240 (342)
T ss_dssp EE----E------EEEESSTTTS-B-S--EEETTTTEEEEEBTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SS
T ss_pred eE----e------eccccCCCCcccccccceECCCCeEEEEecCCEEEEEeccCCcccccCcccccCccccccCcCCcce
Confidence 11 0 0112211111110 0111112222222222110 00 000 0 11
Q ss_pred CCceeccCCCceEEEe--ec----Cc--CeEEEEecCCCceeeeecccccCCCCCcCCCCCceeeeEEEecCCCCCCceE
Q 021291 152 SKDDVPAEGPKYMAVA--GE----QL--SEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVN 223 (314)
Q Consensus 152 ~~~~~~~~~~~~~~~~--g~----~d--~~i~vwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~ 223 (314)
+.+++++..+.+++.- |. .| ..|-++|+.+++.+.++.. ...+.++. .+.+. .. +
T Consensus 241 Q~~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l-------------~~~~~Si~-Vsqd~--~P-~ 303 (342)
T PF06433_consen 241 QLIAYHAASGRLYVLMHQGGEGSHKDPGTEVWVYDLKTHKRVARIPL-------------EHPIDSIA-VSQDD--KP-L 303 (342)
T ss_dssp S-EEEETTTTEEEEEEEE--TT-TTS-EEEEEEEETTTTEEEEEEEE-------------EEEESEEE-EESSS--S--E
T ss_pred eeeeeccccCeEEEEecCCCCCCccCCceEEEEEECCCCeEEEEEeC-------------CCccceEE-EccCC--Cc-E
Confidence 1167776665555431 11 11 2477889999999999884 23566776 77663 22 5
Q ss_pred EEE-eecCCcEEEEEccCCCCceEeeec
Q 021291 224 VLA-GYEDGSILVWDIRNPGIPLTAMKV 250 (314)
Q Consensus 224 l~~-g~~dg~i~vwd~~~~~~~~~~~~~ 250 (314)
|++ ...++.|.+||..+ ++.+.++..
T Consensus 304 L~~~~~~~~~l~v~D~~t-Gk~~~~~~~ 330 (342)
T PF06433_consen 304 LYALSAGDGTLDVYDAAT-GKLVRSIEQ 330 (342)
T ss_dssp EEEEETTTTEEEEEETTT---EEEEE--
T ss_pred EEEEcCCCCeEEEEeCcC-CcEEeehhc
Confidence 544 45689999999998 888888774
No 369
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=96.94 E-value=0.12 Score=39.91 Aligned_cols=110 Identities=13% Similarity=0.033 Sum_probs=75.9
Q ss_pred CCEEEEecCCCeEEEEeCCCCeEEEEEeccCCcccEEEEEEcccCCCCeEEEeecCCeEEEEeCCCCCCCCCCeeeeecc
Q 021291 30 KPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGGLSSNPSLTIKTN 109 (314)
Q Consensus 30 ~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~ 109 (314)
..+++.|+..+.+.--|..+|+.+..-... .+|.+-+.-- +++++.|...|.+.+.+..+++..++ +...
T Consensus 23 kT~v~igSHs~~~~avd~~sG~~~We~ilg---~RiE~sa~vv---gdfVV~GCy~g~lYfl~~~tGs~~w~----f~~~ 92 (354)
T KOG4649|consen 23 KTLVVIGSHSGIVIAVDPQSGNLIWEAILG---VRIECSAIVV---GDFVVLGCYSGGLYFLCVKTGSQIWN----FVIL 92 (354)
T ss_pred ceEEEEecCCceEEEecCCCCcEEeehhhC---ceeeeeeEEE---CCEEEEEEccCcEEEEEecchhheee----eeeh
Confidence 467888999999999999999877643222 3355544433 47899999999999999999976552 1111
Q ss_pred eeeEEEeeeeeccccccccCCCCcceeeccCCceeeecCCCCCCceeccCCCceEEEeecCcCeEEEEecCCCceeeeec
Q 021291 110 SYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLH 189 (314)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~vwd~~~~~~~~~~~ 189 (314)
....+. ....+++..+. +|+.|++.+..|.++..++...+
T Consensus 93 ~~vk~~--------------------------------------a~~d~~~glIy--cgshd~~~yalD~~~~~cVyksk 132 (354)
T KOG4649|consen 93 ETVKVR--------------------------------------AQCDFDGGLIY--CGSHDGNFYALDPKTYGCVYKSK 132 (354)
T ss_pred hhhccc--------------------------------------eEEcCCCceEE--EecCCCcEEEecccccceEEecc
Confidence 100000 12445665333 78999999999999988887755
No 370
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.91 E-value=0.024 Score=52.04 Aligned_cols=84 Identities=15% Similarity=0.144 Sum_probs=60.7
Q ss_pred CCCEEEEecCCCeEEEEeCCCCeEEEEEeccCCcccEEEEEEcccCCCCeEEEeecCCeEEEEeCCCCCCCCCCeeeeec
Q 021291 29 TKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGGLSSNPSLTIKT 108 (314)
Q Consensus 29 ~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~ 108 (314)
.+..++.|+..|.|...|....-. .-.++.....+|++++|+. +|..++.|-.+|.|.+||+..++..+ .++...
T Consensus 98 ~~~~ivi~Ts~ghvl~~d~~~nL~-~~~~ne~v~~~Vtsvafn~--dg~~l~~G~~~G~V~v~D~~~~k~l~--~i~e~~ 172 (1206)
T KOG2079|consen 98 VVVPIVIGTSHGHVLLSDMTGNLG-PLHQNERVQGPVTSVAFNQ--DGSLLLAGLGDGHVTVWDMHRAKILK--VITEHG 172 (1206)
T ss_pred eeeeEEEEcCchhhhhhhhhcccc-hhhcCCccCCcceeeEecC--CCceeccccCCCcEEEEEccCCccee--eeeecC
Confidence 455788899999999988764311 1122333336799999999 99999999999999999999987765 555555
Q ss_pred ceeeEEEee
Q 021291 109 NSYHFCKLS 117 (314)
Q Consensus 109 ~~~~~~~~~ 117 (314)
.+.....+.
T Consensus 173 ap~t~vi~v 181 (1206)
T KOG2079|consen 173 APVTGVIFV 181 (1206)
T ss_pred CccceEEEE
Confidence 555444433
No 371
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=96.82 E-value=0.2 Score=40.66 Aligned_cols=79 Identities=14% Similarity=0.122 Sum_probs=50.3
Q ss_pred eeeeEEEecCCCCCCceEEEEeecCCcEEEEEccC-CC----C-ceEeeecCCcceEEEEEeCCCCeEEEecCCC-cEEE
Q 021291 206 MCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRN-PG----I-PLTAMKVHLEPVLCLSIDESCNGGISGGADQ-KIVL 278 (314)
Q Consensus 206 ~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~-~~----~-~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg-~i~i 278 (314)
....++ |+|| ++.++++=+..+.|+-|++.. .+ + ....+....+..-.++.+.+|.+.+++-.+| .|.+
T Consensus 164 ~~NGla-~SpD---g~tly~aDT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~v~~ 239 (307)
T COG3386 164 IPNGLA-FSPD---GKTLYVADTPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWGGGRVVR 239 (307)
T ss_pred ecCceE-ECCC---CCEEEEEeCCCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEecccCCceEEE
Confidence 344555 9999 543666666678898888762 11 1 1122223345566788889998765554454 8999
Q ss_pred EecCCCeeeEe
Q 021291 279 YNLDHSTYVLF 289 (314)
Q Consensus 279 w~~~~~~~~~~ 289 (314)
|+.+ ++.+..
T Consensus 240 ~~pd-G~l~~~ 249 (307)
T COG3386 240 FNPD-GKLLGE 249 (307)
T ss_pred ECCC-CcEEEE
Confidence 9998 766654
No 372
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=96.74 E-value=0.079 Score=48.26 Aligned_cols=60 Identities=15% Similarity=0.081 Sum_probs=41.2
Q ss_pred ecCCCeEEEEeCCCCeEEEEEeccCCcccEEEEEEccc---CCCCeEEEeecCCeEEEEeCCCC
Q 021291 36 GTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPS---IGLNKVISQGRDGTVKCWDIENG 96 (314)
Q Consensus 36 ~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~---~~~~~l~s~~~dg~v~iwd~~~~ 96 (314)
......|+-.|++.|+.+..+..+.. .+|..++-... ......+.|-.+..|..||.+-.
T Consensus 500 ~~~~~~ly~mDLe~GKVV~eW~~~~~-~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~ 562 (794)
T PF08553_consen 500 PNNPNKLYKMDLERGKVVEEWKVHDD-IPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLS 562 (794)
T ss_pred CCCCCceEEEecCCCcEEEEeecCCC-cceeEecccccccccCCCceEEEECCCceEEeccCCC
Confidence 34567899999999999999988763 22555543210 01245566777889999999854
No 373
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.73 E-value=0.0044 Score=56.48 Aligned_cols=67 Identities=15% Similarity=0.281 Sum_probs=53.7
Q ss_pred EEEEeecCCcEEEEEccCCCCceEeeecCCcceEEEEEeCCCCeEEEecCCCcEEEEecCCCeeeEe
Q 021291 223 NVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTYVLF 289 (314)
Q Consensus 223 ~l~~g~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~iw~~~~~~~~~~ 289 (314)
.++.|+..|.+...|.+..-.+...-..-..+|++++|+.+|.+++.|=.+|.|.+||+..++.+..
T Consensus 101 ~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~ 167 (1206)
T KOG2079|consen 101 PIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKV 167 (1206)
T ss_pred eEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCCcceee
Confidence 7899999999999998852222222223367999999999999999999999999999999876654
No 374
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=96.67 E-value=0.17 Score=37.78 Aligned_cols=68 Identities=10% Similarity=-0.002 Sum_probs=38.6
Q ss_pred CCCEEEEecCC--CeEEEEeCCCCeEEEEEeccCCcccEEEEEEcccCCCCeEE-EeecCCeEEEEeCCCCCCCC
Q 021291 29 TKPILFAGTTG--GELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVI-SQGRDGTVKCWDIENGGLSS 100 (314)
Q Consensus 29 ~~~~l~s~~~d--g~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~-s~~~dg~v~iwd~~~~~~~~ 100 (314)
+|.++.+.+.- ..|++||+.+++.+..-..... .+..=-... -++.+. -.-.||.-..+|.++-++..
T Consensus 55 ~g~i~esTG~yg~S~ir~~~L~~gq~~~s~~l~~~--~~FgEGit~--~gd~~y~LTw~egvaf~~d~~t~~~lg 125 (262)
T COG3823 55 DGHILESTGLYGFSKIRVSDLTTGQEIFSEKLAPD--TVFGEGITK--LGDYFYQLTWKEGVAFKYDADTLEELG 125 (262)
T ss_pred CCEEEEeccccccceeEEEeccCceEEEEeecCCc--cccccceee--ccceEEEEEeccceeEEEChHHhhhhc
Confidence 55666666553 4699999999988766543321 121111111 123333 23346778888888876544
No 375
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=96.66 E-value=0.25 Score=39.57 Aligned_cols=236 Identities=14% Similarity=0.091 Sum_probs=112.9
Q ss_pred CCCEEEEecCCCeEEEEeCCCCeEEEEEeccCCcccEEEEEEcccCCCCeEEEeecCCeEEEEeCCCCCCCCCCe--e--
Q 021291 29 TKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGGLSSNPS--L-- 104 (314)
Q Consensus 29 ~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~--~-- 104 (314)
.++.|+.|+.+| +.+++.........+.. . ..|..+...| +-+.|+.-+ |+.|.++++..-....... .
T Consensus 6 ~~~~L~vGt~~G-l~~~~~~~~~~~~~i~~-~--~~I~ql~vl~--~~~~llvLs-d~~l~~~~L~~l~~~~~~~~~~~~ 78 (275)
T PF00780_consen 6 WGDRLLVGTEDG-LYVYDLSDPSKPTRILK-L--SSITQLSVLP--ELNLLLVLS-DGQLYVYDLDSLEPVSTSAPLAFP 78 (275)
T ss_pred CCCEEEEEECCC-EEEEEecCCccceeEee-c--ceEEEEEEec--ccCEEEEEc-CCccEEEEchhhcccccccccccc
Confidence 577899999999 89999833332222222 2 2399999999 666666655 5999999987654322100 0
Q ss_pred -------eeecceeeEEEee---eeeccccccccCCCCcceeeccCC--c--eeeecCCCCCC---ceeccCCCceEEEe
Q 021291 105 -------TIKTNSYHFCKLS---LVKEPYANAKQANEPKDCYEREVG--E--TVDTDSLCDSK---DDVPAEGPKYMAVA 167 (314)
Q Consensus 105 -------~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~--~--~~~~~~~~~~~---~~~~~~~~~~~~~~ 167 (314)
.+.. ......+. ..........+......++..... . .....+.-... ++|. ++.+++
T Consensus 79 ~~~~~~~~~~~-~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~~~~ke~~lp~~~~~i~~~--~~~i~v-- 153 (275)
T PF00780_consen 79 KSRSLPTKLPE-TKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFSKLLKEISLPDPPSSIAFL--GNKICV-- 153 (275)
T ss_pred ccccccccccc-cCCeeEEeeccccccceEEEEEECCEEEEEEEECCcccccceeEEEEcCCCcEEEEEe--CCEEEE--
Confidence 0000 00111111 000111111222223333333321 1 11111111111 6666 344443
Q ss_pred ecCcCeEEEEecCCCceeeeecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEeecCCcEEEEEccCCCCceE-
Q 021291 168 GEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLT- 246 (314)
Q Consensus 168 g~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~~- 246 (314)
|. .+...+.|+.++.....+............. .......+. --++ ++ +|++- |..-.+.|.. +++.+
T Consensus 154 ~~-~~~f~~idl~~~~~~~l~~~~~~~~~~~~~~-~~~~~~~~~-~~~~---~e-~Ll~~--~~~g~fv~~~--G~~~r~ 222 (275)
T PF00780_consen 154 GT-SKGFYLIDLNTGSPSELLDPSDSSSSFKSRN-SSSKPLGIF-QLSD---NE-FLLCY--DNIGVFVNKN--GEPSRK 222 (275)
T ss_pred Ee-CCceEEEecCCCCceEEeCccCCcchhhhcc-cCCCceEEE-EeCC---ce-EEEEe--cceEEEEcCC--CCcCcc
Confidence 33 2568999999776544332110000000000 011112221 1122 33 55543 3333344544 44443
Q ss_pred -eeecCCcceEEEEEeCCCCeEEEecCCCcEEEEecCCCeeeEeee
Q 021291 247 -AMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTYVLFGI 291 (314)
Q Consensus 247 -~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~iw~~~~~~~~~~~~ 291 (314)
.+.- .....++++... +|+..+. +.|.||++.+++.+..+.
T Consensus 223 ~~i~W-~~~p~~~~~~~p--yli~~~~-~~iEV~~~~~~~lvQ~i~ 264 (275)
T PF00780_consen 223 STIQW-SSAPQSVAYSSP--YLIAFSS-NSIEVRSLETGELVQTIP 264 (275)
T ss_pred cEEEc-CCchhEEEEECC--EEEEECC-CEEEEEECcCCcEEEEEE
Confidence 3333 446677777544 7777665 459999999998877653
No 376
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=96.66 E-value=0.32 Score=40.84 Aligned_cols=106 Identities=11% Similarity=0.085 Sum_probs=53.5
Q ss_pred cCcCeEEEEecCCCceeeeecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEeecCCcEEEEEccCCCC----c
Q 021291 169 EQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGI----P 244 (314)
Q Consensus 169 ~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~----~ 244 (314)
....++.+||+.+.+.++++.. +. .......+. |..+.. ...-++.+....+|..|--...+. .
T Consensus 219 ~yG~~l~vWD~~~r~~~Q~idL-------g~---~g~~pLEvR-flH~P~-~~~gFvg~aLss~i~~~~k~~~g~W~a~k 286 (461)
T PF05694_consen 219 KYGHSLHVWDWSTRKLLQTIDL-------GE---EGQMPLEVR-FLHDPD-ANYGFVGCALSSSIWRFYKDDDGEWAAEK 286 (461)
T ss_dssp -S--EEEEEETTTTEEEEEEES--------T---TEEEEEEEE-E-SSTT---EEEEEEE--EEEEEEEE-ETTEEEEEE
T ss_pred cccCeEEEEECCCCcEeeEEec-------CC---CCCceEEEE-ecCCCC-ccceEEEEeccceEEEEEEcCCCCeeeeE
Confidence 3457899999999999998874 21 123455565 665532 222444444555565554321121 1
Q ss_pred eEeeec-----------------CCcceEEEEEeCCCCeE-EEecCCCcEEEEecCCCee
Q 021291 245 LTAMKV-----------------HLEPVLCLSIDESCNGG-ISGGADQKIVLYNLDHSTY 286 (314)
Q Consensus 245 ~~~~~~-----------------h~~~v~~~~~~~~~~~l-~s~s~dg~i~iw~~~~~~~ 286 (314)
+..+.. -..-|+.|..|.|.++| +++=.+|.|+.||+.....
T Consensus 287 Vi~ip~~~v~~~~lp~ml~~~~~~P~LitDI~iSlDDrfLYvs~W~~GdvrqYDISDP~~ 346 (461)
T PF05694_consen 287 VIDIPAKKVEGWILPEMLKPFGAVPPLITDILISLDDRFLYVSNWLHGDVRQYDISDPFN 346 (461)
T ss_dssp EEEE--EE--SS---GGGGGG-EE------EEE-TTS-EEEEEETTTTEEEEEE-SSTTS
T ss_pred EEECCCcccCcccccccccccccCCCceEeEEEccCCCEEEEEcccCCcEEEEecCCCCC
Confidence 111111 12357899999999988 4555699999999987643
No 377
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=96.58 E-value=0.3 Score=44.53 Aligned_cols=78 Identities=14% Similarity=0.156 Sum_probs=52.5
Q ss_pred CceeEEEEccCCCEEEEecCCCeEEEEeCCC----------CeE---EEEEe------ccCCcccEEEEEEcccC-CCCe
Q 021291 19 ASVTDVCFHQTKPILFAGTTGGELRIWDTVQ----------HRT---VSSSW------VHSAAHGIVSVATGPSI-GLNK 78 (314)
Q Consensus 19 ~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~----------~~~---~~~~~------~~~~~~~v~~~~~~~~~-~~~~ 78 (314)
-.|..+.++|+|++||..|..|. .|-.+.. |+. .+++. .......|..+.|+|.. ++..
T Consensus 85 f~v~~i~~n~~g~~lal~G~~~v-~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~~ 163 (717)
T PF10168_consen 85 FEVHQISLNPTGSLLALVGPRGV-VVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDSH 163 (717)
T ss_pred eeEEEEEECCCCCEEEEEcCCcE-EEEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCCe
Confidence 46888999999999999988774 4444421 111 11111 11112459999999942 2478
Q ss_pred EEEeecCCeEEEEeCCCCC
Q 021291 79 VISQGRDGTVKCWDIENGG 97 (314)
Q Consensus 79 l~s~~~dg~v~iwd~~~~~ 97 (314)
|+.-..|+++++||+....
T Consensus 164 l~vLtsdn~lR~y~~~~~~ 182 (717)
T PF10168_consen 164 LVVLTSDNTLRLYDISDPQ 182 (717)
T ss_pred EEEEecCCEEEEEecCCCC
Confidence 8888899999999997543
No 378
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.48 E-value=0.095 Score=41.04 Aligned_cols=109 Identities=16% Similarity=0.047 Sum_probs=75.8
Q ss_pred ceeccCCCceEEEeecCcCeEEEEecCCCceeeeecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEeec----
Q 021291 154 DDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYE---- 229 (314)
Q Consensus 154 ~~~~~~~~~~~~~~g~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~---- 229 (314)
++++|.-..-++++---.....++|....+.+.++.....--..+| = .|+|| |+ +|++.-.
T Consensus 73 i~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RHfyGH----------G-vfs~d---G~-~LYATEndfd~ 137 (366)
T COG3490 73 IAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHFYGH----------G-VFSPD---GR-LLYATENDFDP 137 (366)
T ss_pred eecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccCceeecc----------c-ccCCC---Cc-EEEeecCCCCC
Confidence 7888888777766544334578899998887777653211111122 1 39998 66 5655433
Q ss_pred -CCcEEEEEccCCCCceEeeecCCcceEEEEEeCCCCeEEEecCCCcEEEE
Q 021291 230 -DGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLY 279 (314)
Q Consensus 230 -dg~i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~iw 279 (314)
-|.|-|||.+..-+.+.++..|.-.-..+.+.+||+.|+.+ +|-|...
T Consensus 138 ~rGViGvYd~r~~fqrvgE~~t~GiGpHev~lm~DGrtlvva--nGGIeth 186 (366)
T COG3490 138 NRGVIGVYDAREGFQRVGEFSTHGIGPHEVTLMADGRTLVVA--NGGIETH 186 (366)
T ss_pred CCceEEEEecccccceecccccCCcCcceeEEecCCcEEEEe--CCceecc
Confidence 37899999998678888999998888999999999988766 3334444
No 379
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=96.34 E-value=0.057 Score=45.46 Aligned_cols=91 Identities=14% Similarity=0.111 Sum_probs=64.9
Q ss_pred CCCceEEecCCCCceeEEEEccCCCEEEEecCCCeEEEEeCCCCeEEEEEeccCCcccEEEEEEcccCC-----------
Q 021291 7 PPDPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIG----------- 75 (314)
Q Consensus 7 ~~~~~~~l~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~----------- 75 (314)
|-.....|......+.+++.+|++++.|+...=|.|.++|+.++..++.+++..++ .+.-+......+
T Consensus 296 ~l~~r~~l~D~~R~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~vvrmWKGYRdA-qc~wi~~~~~~~~~~~~~~~~~~ 374 (415)
T PF14655_consen 296 PLPMRFGLPDSKREGESICLSPSGRLAAVTDSLGRVLLIDVARGIVVRMWKGYRDA-QCGWIEVPEEGDRDRSNSNSPKS 374 (415)
T ss_pred ccceEEeeccCCceEEEEEECCCCCEEEEEcCCCcEEEEECCCChhhhhhccCccc-eEEEEEeecccccccccccccCC
Confidence 33456677778888999999999999888888899999999999998888887754 111111111000
Q ss_pred ----CC-eEEEeecCCeEEEEeCCCCCC
Q 021291 76 ----LN-KVISQGRDGTVKCWDIENGGL 98 (314)
Q Consensus 76 ----~~-~l~s~~~dg~v~iwd~~~~~~ 98 (314)
.. +++-+-.-|.|.||.++++..
T Consensus 375 ~~~~~l~LvIyaprRg~lEvW~~~~g~R 402 (415)
T PF14655_consen 375 SSRFALFLVIYAPRRGILEVWSMRQGPR 402 (415)
T ss_pred CCcceEEEEEEeccCCeEEEEecCCCCE
Confidence 01 233566688999999998865
No 380
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=96.27 E-value=0.4 Score=37.58 Aligned_cols=183 Identities=13% Similarity=0.181 Sum_probs=88.2
Q ss_pred cEEEEEEcccCCCC-eEEEeecCCeEEEEeCCCCCCCCCCeeeeecceeeEEEeeeeeccccccccCCCCcceeeccCCc
Q 021291 64 GIVSVATGPSIGLN-KVISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGE 142 (314)
Q Consensus 64 ~v~~~~~~~~~~~~-~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 142 (314)
.+..|+|.| +.+ +++.....+.|...+.. ++.++ .+.+........
T Consensus 23 e~SGLTy~p--d~~tLfaV~d~~~~i~els~~-G~vlr--~i~l~g~~D~Eg---------------------------- 69 (248)
T PF06977_consen 23 ELSGLTYNP--DTGTLFAVQDEPGEIYELSLD-GKVLR--RIPLDGFGDYEG---------------------------- 69 (248)
T ss_dssp -EEEEEEET--TTTEEEEEETTTTEEEEEETT---EEE--EEE-SS-SSEEE----------------------------
T ss_pred CccccEEcC--CCCeEEEEECCCCEEEEEcCC-CCEEE--EEeCCCCCCcee----------------------------
Confidence 499999999 655 55566777888888864 54433 122211110000
Q ss_pred eeeecCCCCCCceeccCCCceEEEeecCcCeEEEEecCCCc------eeeeecccccCCCCCcCCCCCceeeeEEEecCC
Q 021291 143 TVDTDSLCDSKDDVPAEGPKYMAVAGEQLSEVEIWDLNTAE------RCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPS 216 (314)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~vwd~~~~~------~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~ 216 (314)
+++.-++ .++++...++.+.++++.... ....+.. +.....+.-.-.++ |+|.
T Consensus 70 -----------I~y~g~~--~~vl~~Er~~~L~~~~~~~~~~~~~~~~~~~~~l-------~~~~~~N~G~EGla-~D~~ 128 (248)
T PF06977_consen 70 -----------ITYLGNG--RYVLSEERDQRLYIFTIDDDTTSLDRADVQKISL-------GFPNKGNKGFEGLA-YDPK 128 (248)
T ss_dssp -----------EEE-STT--EEEEEETTTTEEEEEEE----TT--EEEEEEEE----------S---SS--EEEE-EETT
T ss_pred -----------EEEECCC--EEEEEEcCCCcEEEEEEeccccccchhhceEEec-------ccccCCCcceEEEE-EcCC
Confidence 3344444 344455557889999884321 1122221 11111233355565 9987
Q ss_pred CCCCceEEEEeecCCcEEEEEccC--CCCceEe--ee------cCCcceEEEEEeCCC-CeEEEecCCCcEEEEecCCCe
Q 021291 217 KSQGFVNVLAGYEDGSILVWDIRN--PGIPLTA--MK------VHLEPVLCLSIDESC-NGGISGGADQKIVLYNLDHST 285 (314)
Q Consensus 217 ~~~g~~~l~~g~~dg~i~vwd~~~--~~~~~~~--~~------~h~~~v~~~~~~~~~-~~l~s~s~dg~i~iw~~~~~~ 285 (314)
++ .|+++-+..-..+|.++. ....+.. .. .....+.+++++|.. .+++....+..|.++| ..|+
T Consensus 129 ---~~-~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~S~l~~~p~t~~lliLS~es~~l~~~d-~~G~ 203 (248)
T PF06977_consen 129 ---TN-RLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVRDLSGLSYDPRTGHLLILSDESRLLLELD-RQGR 203 (248)
T ss_dssp ---TT-EEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT--SS---EEEEETTTTEEEEEETTTTEEEEE--TT--
T ss_pred ---CC-EEEEEeCCCChhhEEEccccCccceeeccccccccccceeccccceEEcCCCCeEEEEECCCCeEEEEC-CCCC
Confidence 33 455566776677777653 1111111 11 123457888997754 4556666677777777 3333
Q ss_pred e----------------eEeeeeeeecCCCceecee
Q 021291 286 Y----------------VLFGIGFVCDQEGNKFGTT 305 (314)
Q Consensus 286 ~----------------~~~~~~~~~~~~~~~~~~~ 305 (314)
. +.+..|++++++|.++..+
T Consensus 204 ~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~LYIvs 239 (248)
T PF06977_consen 204 VVSSLSLDRGFHGLSKDIPQPEGIAFDPDGNLYIVS 239 (248)
T ss_dssp EEEEEE-STTGGG-SS---SEEEEEE-TT--EEEEE
T ss_pred EEEEEEeCCcccCcccccCCccEEEECCCCCEEEEc
Confidence 2 2346888999999887765
No 381
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=96.12 E-value=0.096 Score=48.70 Aligned_cols=144 Identities=12% Similarity=-0.011 Sum_probs=87.2
Q ss_pred eeccCCCceEEEeecCcCeEEEEecCCCceeeeecccccCCCCCc--CCCCCceeeeEEEecCCCCCCceEEEEeecCCc
Q 021291 155 DVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNF--SSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGS 232 (314)
Q Consensus 155 ~~~~~~~~~~~~~g~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~h--~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~ 232 (314)
...+|+...++...+.+-.|..||+++......... .....| ..+......++. |.|.-+. ..++...|+.
T Consensus 107 v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~---~pl~~s~ts~ek~vf~~~~~-wnP~vp~---n~av~l~dls 179 (1405)
T KOG3630|consen 107 VCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETT---VPLKNSATSFEKPVFQLKNV-WNPLVPL---NSAVDLSDLS 179 (1405)
T ss_pred EeccCCceEEEEEecCCceEEEEehHhhhhhhhhhc---cccccccchhcccccccccc-ccCCccc---hhhhhccccc
Confidence 345666655555555556799999986543221100 000011 111233455666 8887543 5677888999
Q ss_pred EEEEEccCCCCceEeeecCCcceEEEEEeCCCCeEEEecCCCcEEEEecCCCeeeEeeeeeeecCCCceeceeec
Q 021291 233 ILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTYVLFGIGFVCDQEGNKFGTTWH 307 (314)
Q Consensus 233 i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~w~ 307 (314)
|++..+......+..+. .....++++|+|.|+.++.|-..|++.-|...-.. ...+.+-..-+.++.+...|.
T Consensus 180 l~V~~~~~~~~~v~s~p-~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~lei-k~~ip~Pp~~e~yrvl~v~Wl 252 (1405)
T KOG3630|consen 180 LRVKSTKQLAQNVTSFP-VTNSQTAVLWSPRGKQLFIGRNNGTEVQYEPSLEI-KSEIPEPPVEENYRVLSVTWL 252 (1405)
T ss_pred hhhhhhhhhhhhhcccC-cccceeeEEeccccceeeEecCCCeEEEeecccce-eecccCCCcCCCcceeEEEEe
Confidence 99998875344444433 35678999999999999999999999998765432 222222222234556666664
No 382
>PHA03098 kelch-like protein; Provisional
Probab=95.98 E-value=1.1 Score=39.94 Aligned_cols=66 Identities=14% Similarity=0.073 Sum_probs=34.1
Q ss_pred CCCEEEEecCCC------eEEEEeCCCCeEEEEEeccCCcccEEEEEEcccCCCCeEEEeecC-----CeEEEEeCCCCC
Q 021291 29 TKPILFAGTTGG------ELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRD-----GTVKCWDIENGG 97 (314)
Q Consensus 29 ~~~~l~s~~~dg------~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d-----g~v~iwd~~~~~ 97 (314)
++.+++.||.++ .+..||..+.+....-...........+. - ++..++.|+.+ ..+..||..+++
T Consensus 294 ~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~R~~~~~~~--~--~~~lyv~GG~~~~~~~~~v~~yd~~~~~ 369 (534)
T PHA03098 294 NNVIYFIGGMNKNNLSVNSVVSYDTKTKSWNKVPELIYPRKNPGVTV--F--NNRIYVIGGIYNSISLNTVESWKPGESK 369 (534)
T ss_pred CCEEEEECCCcCCCCeeccEEEEeCCCCeeeECCCCCcccccceEEE--E--CCEEEEEeCCCCCEecceEEEEcCCCCc
Confidence 455667776543 57788887765532211111101112222 2 44677777765 346677777654
Q ss_pred C
Q 021291 98 L 98 (314)
Q Consensus 98 ~ 98 (314)
.
T Consensus 370 W 370 (534)
T PHA03098 370 W 370 (534)
T ss_pred e
Confidence 3
No 383
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=95.84 E-value=0.63 Score=38.29 Aligned_cols=91 Identities=15% Similarity=0.235 Sum_probs=55.9
Q ss_pred CeEEEEecCCC----ceeeeecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEeecCCcEEEEEccCCCC-ceE
Q 021291 172 SEVEIWDLNTA----ERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGI-PLT 246 (314)
Q Consensus 172 ~~i~vwd~~~~----~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~-~~~ 246 (314)
|.|.++++... ..+..+ |.....+.++++..|. | .|+++. ++.|.+|++.. .+ .+.
T Consensus 62 Gri~v~~i~~~~~~~~~l~~i----------~~~~~~g~V~ai~~~~-----~--~lv~~~-g~~l~v~~l~~-~~~l~~ 122 (321)
T PF03178_consen 62 GRILVFEISESPENNFKLKLI----------HSTEVKGPVTAICSFN-----G--RLVVAV-GNKLYVYDLDN-SKTLLK 122 (321)
T ss_dssp EEEEEEEECSS-----EEEEE----------EEEEESS-EEEEEEET-----T--EEEEEE-TTEEEEEEEET-TSSEEE
T ss_pred cEEEEEEEEcccccceEEEEE----------EEEeecCcceEhhhhC-----C--EEEEee-cCEEEEEEccC-cccchh
Confidence 88999999884 122222 1122467888888562 3 444443 47899999997 44 332
Q ss_pred eee-cCCcceEEEEEeCCCCeEEEecCCCcEEEEecCC
Q 021291 247 AMK-VHLEPVLCLSIDESCNGGISGGADQKIVLYNLDH 283 (314)
Q Consensus 247 ~~~-~h~~~v~~~~~~~~~~~l~s~s~dg~i~iw~~~~ 283 (314)
.-. .....+.++....+ +++.|..-..+.++.++.
T Consensus 123 ~~~~~~~~~i~sl~~~~~--~I~vgD~~~sv~~~~~~~ 158 (321)
T PF03178_consen 123 KAFYDSPFYITSLSVFKN--YILVGDAMKSVSLLRYDE 158 (321)
T ss_dssp EEEE-BSSSEEEEEEETT--EEEEEESSSSEEEEEEET
T ss_pred hheecceEEEEEEecccc--EEEEEEcccCEEEEEEEc
Confidence 222 12336677766655 888998888888886654
No 384
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=95.81 E-value=0.067 Score=28.65 Aligned_cols=31 Identities=23% Similarity=0.214 Sum_probs=26.2
Q ss_pred CceeEEEEccC-C--CEEEEecCCCeEEEEeCCC
Q 021291 19 ASVTDVCFHQT-K--PILFAGTTGGELRIWDTVQ 49 (314)
Q Consensus 19 ~~v~~~~~~~~-~--~~l~s~~~dg~v~iwd~~~ 49 (314)
+.|.+++|+|+ + .+|+-+-.-|.|.|+|+++
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~ 34 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS 34 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence 47899999984 4 5888888889999999985
No 385
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.71 E-value=0.78 Score=36.21 Aligned_cols=73 Identities=14% Similarity=0.180 Sum_probs=43.8
Q ss_pred eEEEEcc-CCCEEEEecCCCe-EEEEeCCCCeEEEEEeccCCcccEEEEEEcccCCCCeEEEeecC-----CeEEEEeCC
Q 021291 22 TDVCFHQ-TKPILFAGTTGGE-LRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRD-----GTVKCWDIE 94 (314)
Q Consensus 22 ~~~~~~~-~~~~l~s~~~dg~-v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d-----g~v~iwd~~ 94 (314)
..++|+| ...-++.+-.-|+ ..++|..+.+.+.++...++...--.=.|+| ||.+|+..-.| |.|-|||.+
T Consensus 71 Hgi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RHfyGHGvfs~--dG~~LYATEndfd~~rGViGvYd~r 148 (366)
T COG3490 71 HGIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHFYGHGVFSP--DGRLLYATENDFDPNRGVIGVYDAR 148 (366)
T ss_pred CCeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccCceeecccccCC--CCcEEEeecCCCCCCCceEEEEecc
Confidence 3466666 3444555555554 4577877776666554333211122335888 98888876544 678899987
Q ss_pred CC
Q 021291 95 NG 96 (314)
Q Consensus 95 ~~ 96 (314)
.+
T Consensus 149 ~~ 150 (366)
T COG3490 149 EG 150 (366)
T ss_pred cc
Confidence 43
No 386
>PRK13616 lipoprotein LpqB; Provisional
Probab=95.70 E-value=1.5 Score=39.39 Aligned_cols=60 Identities=10% Similarity=-0.042 Sum_probs=37.9
Q ss_pred CceeEEEEccCCCEEEEec------CCC--eEEEEeCCCCeEEEEEeccCCcccEEEEEEcccCCCCeEEEeecC
Q 021291 19 ASVTDVCFHQTKPILFAGT------TGG--ELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRD 85 (314)
Q Consensus 19 ~~v~~~~~~~~~~~l~s~~------~dg--~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d 85 (314)
..+...+++|+|+.++... .|+ .|.+++.. +.......+. ....-.|+| +|+.+++.+..
T Consensus 350 ~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~g-g~~~~lt~g~----~~t~PsWsp--DG~~lw~v~dg 417 (591)
T PRK13616 350 GNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLG-GVAVQVLEGH----SLTRPSWSL--DADAVWVVVDG 417 (591)
T ss_pred cCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCC-CcceeeecCC----CCCCceECC--CCCceEEEecC
Confidence 3567889999998876554 243 55555643 2232222222 267889999 98888877643
No 387
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=95.69 E-value=1.8 Score=40.17 Aligned_cols=72 Identities=13% Similarity=0.062 Sum_probs=49.6
Q ss_pred CCCEEEEecCCCeEEEEeCCCCeEEEEEeccCCccc------EEEEEEcc--------------cCCCCeEEEeecCCeE
Q 021291 29 TKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHG------IVSVATGP--------------SIGLNKVISQGRDGTV 88 (314)
Q Consensus 29 ~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~------v~~~~~~~--------------~~~~~~l~s~~~dg~v 88 (314)
.+..|+.++.++.|.-.|..+|+.+.++........ ...+++.. ...+..++.++.|+.|
T Consensus 193 vgg~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~L 272 (764)
T TIGR03074 193 VGDTLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARL 272 (764)
T ss_pred ECCEEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCCeE
Confidence 355788888899999999999999988764332110 11233321 1123578888889999
Q ss_pred EEEeCCCCCCCC
Q 021291 89 KCWDIENGGLSS 100 (314)
Q Consensus 89 ~iwd~~~~~~~~ 100 (314)
.-.|.++++...
T Consensus 273 iALDA~TGk~~W 284 (764)
T TIGR03074 273 IALDADTGKLCE 284 (764)
T ss_pred EEEECCCCCEEE
Confidence 999999997643
No 388
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=95.63 E-value=1.1 Score=37.44 Aligned_cols=95 Identities=7% Similarity=0.072 Sum_probs=50.3
Q ss_pred cCCCceEEEeecCcCe--EEEEecCCCceeeeecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEeecCC----
Q 021291 158 AEGPKYMAVAGEQLSE--VEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDG---- 231 (314)
Q Consensus 158 ~~~~~~~~~~g~~d~~--i~vwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg---- 231 (314)
+++..++..+- .||. |.+++...+. ...+.. | .-.+..+..++++ ++.+.+++..++
T Consensus 245 ~~~~~~l~~s~-~~G~~hly~~~~~~~~-~~~lT~-------G-----~~~V~~i~~~d~~---~~~iyf~a~~~~p~~r 307 (353)
T PF00930_consen 245 PDGNEFLWISE-RDGYRHLYLYDLDGGK-PRQLTS-------G-----DWEVTSILGWDED---NNRIYFTANGDNPGER 307 (353)
T ss_dssp TTSSEEEEEEE-TTSSEEEEEEETTSSE-EEESS--------S-----SS-EEEEEEEECT---SSEEEEEESSGGTTSB
T ss_pred CCCCEEEEEEE-cCCCcEEEEEcccccc-eecccc-------C-----ceeecccceEcCC---CCEEEEEecCCCCCce
Confidence 66666665544 5664 5556665554 333431 1 2234344447776 343555665532
Q ss_pred cEEEEEccCCCCceEeeecCCcceEEEEEeCCCCeEEEe
Q 021291 232 SILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISG 270 (314)
Q Consensus 232 ~i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~ 270 (314)
.|+..++.. +..+..+......-..+.|+|++++++-.
T Consensus 308 ~lY~v~~~~-~~~~~~LT~~~~~~~~~~~Spdg~y~v~~ 345 (353)
T PF00930_consen 308 HLYRVSLDS-GGEPKCLTCEDGDHYSASFSPDGKYYVDT 345 (353)
T ss_dssp EEEEEETTE-TTEEEESSTTSSTTEEEEE-TTSSEEEEE
T ss_pred EEEEEEeCC-CCCeEeccCCCCCceEEEECCCCCEEEEE
Confidence 444445551 34455565443333689999999987543
No 389
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=95.62 E-value=1.1 Score=40.14 Aligned_cols=73 Identities=16% Similarity=0.105 Sum_probs=49.5
Q ss_pred eeEEEEccCCCEEEEecCCCeEEEEeCCCCeEEEEEeccCCcccEEEEEEcccCCCCeEEEeecCCeEEEEeCC
Q 021291 21 VTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIE 94 (314)
Q Consensus 21 v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd~~ 94 (314)
..-+.-+.-++..++-+....+.|||...+.....-.- ...+.|.++.|...++++.+++.+..+.|.+|--.
T Consensus 32 ~~li~gss~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f-~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~ 104 (631)
T PF12234_consen 32 PSLISGSSIKKIAVVDSSRSELTIWDTRSGVLEYEESF-SEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQL 104 (631)
T ss_pred cceEeecccCcEEEEECCCCEEEEEEcCCcEEEEeeee-cCCCceeeceeeecCCCCEEEEEEcCcEEEEEEcc
Confidence 33444444444333434445799999988764433222 22256999999887799999999999999999653
No 390
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=95.60 E-value=1.6 Score=39.08 Aligned_cols=70 Identities=16% Similarity=0.119 Sum_probs=44.5
Q ss_pred ccCCCEEEEecCCC------eEEEEeCCCCeEEEEEeccCCcccEEEEEEcccCCCCeEEEeecC------CeEEEEeCC
Q 021291 27 HQTKPILFAGTTGG------ELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRD------GTVKCWDIE 94 (314)
Q Consensus 27 ~~~~~~l~s~~~dg------~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d------g~v~iwd~~ 94 (314)
+..+.+++.||.++ .+..+|..+++.......... ..-.+++... +...++|+.| .++..||..
T Consensus 282 ~~~~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~m~~~-r~~~~~~~~~---~~lYv~GG~~~~~~~l~~ve~YD~~ 357 (571)
T KOG4441|consen 282 SVSGKLVAVGGYNRQGQSLRSVECYDPKTNEWSSLAPMPSP-RCRVGVAVLN---GKLYVVGGYDSGSDRLSSVERYDPR 357 (571)
T ss_pred CCCCeEEEECCCCCCCcccceeEEecCCcCcEeecCCCCcc-cccccEEEEC---CEEEEEccccCCCcccceEEEecCC
Confidence 33466778888774 688899887744332222221 2244555554 4788889888 368889998
Q ss_pred CCCCCC
Q 021291 95 NGGLSS 100 (314)
Q Consensus 95 ~~~~~~ 100 (314)
+++...
T Consensus 358 ~~~W~~ 363 (571)
T KOG4441|consen 358 TNQWTP 363 (571)
T ss_pred CCceec
Confidence 887544
No 391
>PRK13616 lipoprotein LpqB; Provisional
Probab=95.34 E-value=1.8 Score=38.88 Aligned_cols=70 Identities=13% Similarity=0.117 Sum_probs=38.0
Q ss_pred CceeeeEEEecCCCCCCceEEEEeecCCcEEE---EEccCCCC-ce---Eeee-cCCcceEEEEEeCCCCeEEEecCCCc
Q 021291 204 RGMCMAVQAYLPSKSQGFVNVLAGYEDGSILV---WDIRNPGI-PL---TAMK-VHLEPVLCLSIDESCNGGISGGADQK 275 (314)
Q Consensus 204 ~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~v---wd~~~~~~-~~---~~~~-~h~~~v~~~~~~~~~~~l~s~s~dg~ 275 (314)
.+.+..+. |+|| |. .++.-. ++.|++ -.... +. .+ ..+. +-...+.++.|..++.++ .+..++.
T Consensus 447 ~g~Issl~-wSpD---G~-RiA~i~-~g~v~Va~Vvr~~~-G~~~l~~~~~l~~~l~~~~~~l~W~~~~~L~-V~~~~~~ 518 (591)
T PRK13616 447 PGPISELQ-LSRD---GV-RAAMII-GGKVYLAVVEQTED-GQYALTNPREVGPGLGDTAVSLDWRTGDSLV-VGRSDPE 518 (591)
T ss_pred CCCcCeEE-ECCC---CC-EEEEEE-CCEEEEEEEEeCCC-CceeecccEEeecccCCccccceEecCCEEE-EEecCCC
Confidence 34577887 9999 55 343333 467777 33222 32 11 1122 223446889998888754 4444444
Q ss_pred EEEEec
Q 021291 276 IVLYNL 281 (314)
Q Consensus 276 i~iw~~ 281 (314)
-.+|.+
T Consensus 519 ~~v~~v 524 (591)
T PRK13616 519 HPVWYV 524 (591)
T ss_pred CceEEE
Confidence 444543
No 392
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=95.19 E-value=1 Score=34.44 Aligned_cols=104 Identities=15% Similarity=0.132 Sum_probs=64.6
Q ss_pred ceeccCCCceEEEeecCcCeEEEEe--cCCCce-----eeeecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEE
Q 021291 154 DDVPAEGPKYMAVAGEQLSEVEIWD--LNTAER-----CTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLA 226 (314)
Q Consensus 154 ~~~~~~~~~~~~~~g~~d~~i~vwd--~~~~~~-----~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~ 226 (314)
++|+.+.+.+.. .-+.+-+|.-|| ..++.. +..++.. .+..+.. ..++ + ... +|. +.++
T Consensus 163 l~Wd~d~K~fY~-iDsln~~V~a~dyd~~tG~~snr~~i~dlrk~---~~~e~~~-PDGm--~---ID~---eG~-L~Va 228 (310)
T KOG4499|consen 163 LAWDSDAKKFYY-IDSLNYEVDAYDYDCPTGDLSNRKVIFDLRKS---QPFESLE-PDGM--T---IDT---EGN-LYVA 228 (310)
T ss_pred ccccccCcEEEE-EccCceEEeeeecCCCcccccCcceeEEeccC---CCcCCCC-CCcc--e---Ecc---CCc-EEEE
Confidence 888877776655 466677887777 555542 2222210 1111211 1222 1 322 265 6777
Q ss_pred eecCCcEEEEEccCCCCceEeeecCCcceEEEEEeCC-CC-eEEEecC
Q 021291 227 GYEDGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDES-CN-GGISGGA 272 (314)
Q Consensus 227 g~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~-~~-~l~s~s~ 272 (314)
....++|...|..+ ++.+.++.-....|++++|-.. -. +.+|+..
T Consensus 229 ~~ng~~V~~~dp~t-GK~L~eiklPt~qitsccFgGkn~d~~yvT~aa 275 (310)
T KOG4499|consen 229 TFNGGTVQKVDPTT-GKILLEIKLPTPQITSCCFGGKNLDILYVTTAA 275 (310)
T ss_pred EecCcEEEEECCCC-CcEEEEEEcCCCceEEEEecCCCccEEEEEehh
Confidence 77788999999998 9999999988999999999443 22 3345444
No 393
>PHA02713 hypothetical protein; Provisional
Probab=95.16 E-value=1.2 Score=39.90 Aligned_cols=20 Identities=0% Similarity=-0.052 Sum_probs=14.9
Q ss_pred CceEEEEeecCC--cEEEEEccC
Q 021291 220 GFVNVLAGYEDG--SILVWDIRN 240 (314)
Q Consensus 220 g~~~l~~g~~dg--~i~vwd~~~ 240 (314)
|. +.++|+.++ .+..||..+
T Consensus 513 ~~-iyv~Gg~~~~~~~e~yd~~~ 534 (557)
T PHA02713 513 NT-IMMLHCYESYMLQDTFNVYT 534 (557)
T ss_pred CE-EEEEeeecceeehhhcCccc
Confidence 44 788888888 677777775
No 394
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=95.16 E-value=1.2 Score=35.00 Aligned_cols=168 Identities=13% Similarity=0.051 Sum_probs=93.0
Q ss_pred EEEEEeccCCcccEEEEEEcccCCCCeEEEeecCC--eEEEEeCCCCCCCCCCeeeeecceeeEEEeeeeeccccccccC
Q 021291 52 TVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDG--TVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQA 129 (314)
Q Consensus 52 ~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg--~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (314)
.+.++ .|........+.|.. ++.++-+.+.-| .|+.+|+.+++... ...+.......-
T Consensus 35 vv~~y-pHd~~aFTQGL~~~~--~g~LyESTG~yG~S~l~~~d~~tg~~~~--~~~l~~~~FgEG--------------- 94 (264)
T PF05096_consen 35 VVETY-PHDPTAFTQGLEFLD--DGTLYESTGLYGQSSLRKVDLETGKVLQ--SVPLPPRYFGEG--------------- 94 (264)
T ss_dssp EEEEE-E--TT-EEEEEEEEE--TTEEEEEECSTTEEEEEEEETTTSSEEE--EEE-TTT--EEE---------------
T ss_pred EEEEC-CCCCcccCccEEecC--CCEEEEeCCCCCcEEEEEEECCCCcEEE--EEECCcccccee---------------
Confidence 34443 355446678899977 777778888766 79999999987543 122221111000
Q ss_pred CCCcceeeccCCceeeecCCCCCCceeccCCCceEEEeecCcCeEEEEecCCCceeeeecccccCCCCCcCCCCCceeee
Q 021291 130 NEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMA 209 (314)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~ 209 (314)
++.. ++.++..+= .++...+||..+.+.+.++.. .+.-+.
T Consensus 95 ------------------------it~~--~d~l~qLTW-k~~~~f~yd~~tl~~~~~~~y-------------~~EGWG 134 (264)
T PF05096_consen 95 ------------------------ITIL--GDKLYQLTW-KEGTGFVYDPNTLKKIGTFPY-------------PGEGWG 134 (264)
T ss_dssp ------------------------EEEE--TTEEEEEES-SSSEEEEEETTTTEEEEEEE--------------SSS--E
T ss_pred ------------------------EEEE--CCEEEEEEe-cCCeEEEEccccceEEEEEec-------------CCcceE
Confidence 1111 244554444 469999999999998888873 122333
Q ss_pred EEEecCCCCCCceEEEEeecCCcEEEEEccCCCCceEeeecC--Cc---ceEEEEEeCCCCeEEEecCCCcEEEEecCCC
Q 021291 210 VQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVH--LE---PVLCLSIDESCNGGISGGADQKIVLYNLDHS 284 (314)
Q Consensus 210 ~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~h--~~---~v~~~~~~~~~~~l~s~s~dg~i~iw~~~~~ 284 (314)
++ . + |. .|+.......|+++|..+ -+....+... .. .++-|.|- +|...|=.=....|..-|..+|
T Consensus 135 Lt-~--d---g~-~Li~SDGS~~L~~~dP~~-f~~~~~i~V~~~g~pv~~LNELE~i-~G~IyANVW~td~I~~Idp~tG 205 (264)
T PF05096_consen 135 LT-S--D---GK-RLIMSDGSSRLYFLDPET-FKEVRTIQVTDNGRPVSNLNELEYI-NGKIYANVWQTDRIVRIDPETG 205 (264)
T ss_dssp EE-E--C---SS-CEEEE-SSSEEEEE-TTT--SEEEEEE-EETTEE---EEEEEEE-TTEEEEEETTSSEEEEEETTT-
T ss_pred EE-c--C---CC-EEEEECCccceEEECCcc-cceEEEEEEEECCEECCCcEeEEEE-cCEEEEEeCCCCeEEEEeCCCC
Confidence 33 2 2 44 455544466899999876 5555555432 22 34556664 4555555555666777777777
Q ss_pred eeeE
Q 021291 285 TYVL 288 (314)
Q Consensus 285 ~~~~ 288 (314)
+.+.
T Consensus 206 ~V~~ 209 (264)
T PF05096_consen 206 KVVG 209 (264)
T ss_dssp BEEE
T ss_pred eEEE
Confidence 6543
No 395
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=95.09 E-value=0.011 Score=53.20 Aligned_cols=58 Identities=14% Similarity=0.156 Sum_probs=44.6
Q ss_pred EEEEeecCCcEEEEEccCCCCceEeeecCCcceEEEEE-----------eCCCCeEEEecCCCcEEEEecC
Q 021291 223 NVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPVLCLSI-----------DESCNGGISGGADQKIVLYNLD 282 (314)
Q Consensus 223 ~l~~g~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~~~~-----------~~~~~~l~s~s~dg~i~iw~~~ 282 (314)
++..+-.++.|++..... .....+.+|...++.++| +|||..++.++.||.+++|.+-
T Consensus 197 ~ic~~~~~~~i~lL~~~r--a~~~l~rsHs~~~~d~a~~~~g~~~l~~lSpDGtv~a~a~~dG~v~f~Qiy 265 (1283)
T KOG1916|consen 197 YICYGLKGGEIRLLNINR--ALRSLFRSHSQRVTDMAFFAEGVLKLASLSPDGTVFAWAISDGSVGFYQIY 265 (1283)
T ss_pred eeeeccCCCceeEeeech--HHHHHHHhcCCCcccHHHHhhchhhheeeCCCCcEEEEeecCCccceeeee
Confidence 888888899999887764 223455678887777654 7889888999999988888653
No 396
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=95.03 E-value=1.6 Score=35.60 Aligned_cols=101 Identities=15% Similarity=0.154 Sum_probs=57.8
Q ss_pred ceeccCCCceEEEeecCcCeEEEEecCC--Cceeee---ecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEee
Q 021291 154 DDVPAEGPKYMAVAGEQLSEVEIWDLNT--AERCTR---LHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGY 228 (314)
Q Consensus 154 ~~~~~~~~~~~~~~g~~d~~i~vwd~~~--~~~~~~---~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~ 228 (314)
++||||++.+++ +-+..+.|.-|++.. +..... +.. .. ..+..-.++ ..-+ |..++ ++.
T Consensus 168 la~SpDg~tly~-aDT~~~~i~r~~~d~~~g~~~~~~~~~~~-------~~---~~G~PDG~~-vDad---G~lw~-~a~ 231 (307)
T COG3386 168 LAFSPDGKTLYV-ADTPANRIHRYDLDPATGPIGGRRGFVDF-------DE---EPGLPDGMA-VDAD---GNLWV-AAV 231 (307)
T ss_pred eEECCCCCEEEE-EeCCCCeEEEEecCcccCccCCcceEEEc-------cC---CCCCCCceE-EeCC---CCEEE-ecc
Confidence 899999987765 555567888887752 111110 000 00 111111111 3322 65333 444
Q ss_pred cCC-cEEEEEccCCCCceEeeecCCcceEEEEE-eCCCCeE-EEecC
Q 021291 229 EDG-SILVWDIRNPGIPLTAMKVHLEPVLCLSI-DESCNGG-ISGGA 272 (314)
Q Consensus 229 ~dg-~i~vwd~~~~~~~~~~~~~h~~~v~~~~~-~~~~~~l-~s~s~ 272 (314)
.+| .|.+|+.+ ++++..+.-....+++++| .++.+.| +|+..
T Consensus 232 ~~g~~v~~~~pd--G~l~~~i~lP~~~~t~~~FgG~~~~~L~iTs~~ 276 (307)
T COG3386 232 WGGGRVVRFNPD--GKLLGEIKLPVKRPTNPAFGGPDLNTLYITSAR 276 (307)
T ss_pred cCCceEEEECCC--CcEEEEEECCCCCCccceEeCCCcCEEEEEecC
Confidence 443 89999988 7888888877788999999 4444444 44433
No 397
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=94.84 E-value=0.32 Score=37.41 Aligned_cols=69 Identities=17% Similarity=0.254 Sum_probs=49.5
Q ss_pred EccCCCEEEEecCCCeEEEEeCCCCeEEEEE-------ec-----cCCcccEEEEEEcccCCCCeEEEeecCCeEEEEeC
Q 021291 26 FHQTKPILFAGTTGGELRIWDTVQHRTVSSS-------WV-----HSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDI 93 (314)
Q Consensus 26 ~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~-------~~-----~~~~~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd~ 93 (314)
+..++++|++-+.+|.+++||+.+++.+..- .. ......|..+.++. +|.-+++-+ +|....|+.
T Consensus 18 l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~--~G~PiV~ls-ng~~y~y~~ 94 (219)
T PF07569_consen 18 LECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTS--NGVPIVTLS-NGDSYSYSP 94 (219)
T ss_pred EEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcC--CCCEEEEEe-CCCEEEecc
Confidence 3446889999999999999999988764322 10 01224588888887 878777765 578899987
Q ss_pred CCCC
Q 021291 94 ENGG 97 (314)
Q Consensus 94 ~~~~ 97 (314)
.-+.
T Consensus 95 ~L~~ 98 (219)
T PF07569_consen 95 DLGC 98 (219)
T ss_pred ccce
Confidence 6543
No 398
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=94.84 E-value=1.6 Score=34.89 Aligned_cols=227 Identities=15% Similarity=0.120 Sum_probs=117.0
Q ss_pred ceeEEEEccCCCEEEEecCCCeEEEEeCC------CC-eEEEEEeccC---CcccEEEEEEcccC----------CCCeE
Q 021291 20 SVTDVCFHQTKPILFAGTTGGELRIWDTV------QH-RTVSSSWVHS---AAHGIVSVATGPSI----------GLNKV 79 (314)
Q Consensus 20 ~v~~~~~~~~~~~l~s~~~dg~v~iwd~~------~~-~~~~~~~~~~---~~~~v~~~~~~~~~----------~~~~l 79 (314)
.-+.|+|+|.+.+-++....+...+||.. .. ..+-++.... .+...+.+.|+... ....|
T Consensus 24 N~WGia~~p~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~~~~a~F 103 (336)
T TIGR03118 24 NAWGLSYRPGGPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGITGPSRF 103 (336)
T ss_pred ccceeEecCCCCEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCcccceeE
Confidence 34679999999888888888999999986 12 2233333211 12346778877510 11236
Q ss_pred EEeecCCeEEEEeCCCCCCCC-CCeeeeecceeeEEEeeeeeccccccccCCCCcceeeccCCceeeecCCCCCCceecc
Q 021291 80 ISQGRDGTVKCWDIENGGLSS-NPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPA 158 (314)
Q Consensus 80 ~s~~~dg~v~iwd~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (314)
+.+++||+|.-|...-..... .....+..... ...+ ..+++..
T Consensus 104 if~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~-gavY-----------------------------------kGLAi~~ 147 (336)
T TIGR03118 104 LFVTEDGTLSGWAPALGTTRMTRAEIVVDASQQ-GNVY-----------------------------------KGLAVGP 147 (336)
T ss_pred EEEeCCceEEeecCcCCcccccccEEEEccCCC-ccee-----------------------------------eeeEEee
Confidence 788899999999864332200 00111110000 0000 0033332
Q ss_pred --CCCceEEEeecCcCeEEEEecCCCcee--eeecccccCCCCCcCC---CCCceeeeEEEecCCCCCCceEEEEeecCC
Q 021291 159 --EGPKYMAVAGEQLSEVEIWDLNTAERC--TRLHQNSCGGSPNFSS---KGRGMCMAVQAYLPSKSQGFVNVLAGYEDG 231 (314)
Q Consensus 159 --~~~~~~~~~g~~d~~i~vwd~~~~~~~--~~~~~~~~~~~~~h~~---~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg 231 (314)
.+..+++ +--..++|.+||-.=.... ..+..+.. ..+... ..-+.-.-+. |...++++. .=+.|..-|
T Consensus 148 ~~~~~~LYa-adF~~g~IDVFd~~f~~~~~~g~F~DP~i--PagyAPFnIqnig~~lyVt-YA~qd~~~~-d~v~G~G~G 222 (336)
T TIGR03118 148 TGGGDYLYA-ANFRQGRIDVFKGSFRPPPLPGSFIDPAL--PAGYAPFNVQNLGGTLYVT-YAQQDADRN-DEVAGAGLG 222 (336)
T ss_pred cCCCceEEE-eccCCCceEEecCccccccCCCCccCCCC--CCCCCCcceEEECCeEEEE-EEecCCccc-ccccCCCcc
Confidence 2444554 5566789999985422211 01111000 000000 0000001111 222222122 234445557
Q ss_pred cEEEEEccCCCCceEeee--cCCcceEEEEE------eCCCCeEEEecCCCcEEEEecCCCeeeEe
Q 021291 232 SILVWDIRNPGIPLTAMK--VHLEPVLCLSI------DESCNGGISGGADQKIVLYNLDHSTYVLF 289 (314)
Q Consensus 232 ~i~vwd~~~~~~~~~~~~--~h~~~v~~~~~------~~~~~~l~s~s~dg~i~iw~~~~~~~~~~ 289 (314)
.|-+||+. ++.++.+. +.-..-+.|+. ...+.+|+--=.||+|..+|..+++.+-.
T Consensus 223 ~VdvFd~~--G~l~~r~as~g~LNaPWG~a~APa~FG~~sg~lLVGNFGDG~InaFD~~sG~~~g~ 286 (336)
T TIGR03118 223 YVNVFTLN--GQLLRRVASSGRLNAPWGLAIAPESFGSLSGALLVGNFGDGTINAYDPQSGAQLGQ 286 (336)
T ss_pred eEEEEcCC--CcEEEEeccCCcccCCceeeeChhhhCCCCCCeEEeecCCceeEEecCCCCceeee
Confidence 99999988 78888774 22234566666 33566666666699999999998886544
No 399
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=94.63 E-value=0.17 Score=27.14 Aligned_cols=32 Identities=13% Similarity=0.128 Sum_probs=25.7
Q ss_pred cEEEEEEcccCCC--CeEEEeecCCeEEEEeCCCC
Q 021291 64 GIVSVATGPSIGL--NKVISQGRDGTVKCWDIENG 96 (314)
Q Consensus 64 ~v~~~~~~~~~~~--~~l~s~~~dg~v~iwd~~~~ 96 (314)
.|.++.|+|. .+ ++|+.+-.-|.|.|+|+++.
T Consensus 2 AvR~~kFsP~-~~~~DLL~~~E~~g~vhi~D~R~~ 35 (43)
T PF10313_consen 2 AVRCCKFSPE-PGGNDLLAWAEHQGRVHIVDTRSN 35 (43)
T ss_pred CeEEEEeCCC-CCcccEEEEEccCCeEEEEEcccC
Confidence 3889999983 33 57888888899999999963
No 400
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=94.50 E-value=2.7 Score=35.84 Aligned_cols=59 Identities=8% Similarity=-0.060 Sum_probs=38.5
Q ss_pred ceEEEEeecCCcEEEEEccCCCCceEeeecCCcceEEEEEeCCCCeEEEecCCCcEEEEec
Q 021291 221 FVNVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNL 281 (314)
Q Consensus 221 ~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~iw~~ 281 (314)
+.++.+-+.||.+.+|+-+. -.....+.. ---.-.+.|.+....|++++.+..+.-|..
T Consensus 145 ~~~IcVQS~DG~L~~feqe~-~~f~~~lp~-~llPgPl~Y~~~tDsfvt~sss~~l~~Yky 203 (418)
T PF14727_consen 145 RDFICVQSMDGSLSFFEQES-FAFSRFLPD-FLLPGPLCYCPRTDSFVTASSSWTLECYKY 203 (418)
T ss_pred ceEEEEEecCceEEEEeCCc-EEEEEEcCC-CCCCcCeEEeecCCEEEEecCceeEEEecH
Confidence 44899999999999999774 222222322 222234666666667778777777777765
No 401
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=94.47 E-value=1 Score=42.42 Aligned_cols=96 Identities=13% Similarity=0.009 Sum_probs=58.9
Q ss_pred ceeccCCCceEEEeecCcCeEEEEecCCCce-eeeecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEeecCCc
Q 021291 154 DDVPAEGPKYMAVAGEQLSEVEIWDLNTAER-CTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGS 232 (314)
Q Consensus 154 ~~~~~~~~~~~~~~g~~d~~i~vwd~~~~~~-~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~ 232 (314)
+.|.|.-....++ ...|+.|++..+..... ...++ .....++++ |+|. |. .++.|..+|+
T Consensus 161 ~~wnP~vp~n~av-~l~dlsl~V~~~~~~~~~v~s~p-------------~t~~~Tav~-WSpr---GK-Ql~iG~nnGt 221 (1405)
T KOG3630|consen 161 NVWNPLVPLNSAV-DLSDLSLRVKSTKQLAQNVTSFP-------------VTNSQTAVL-WSPR---GK-QLFIGRNNGT 221 (1405)
T ss_pred ccccCCccchhhh-hccccchhhhhhhhhhhhhcccC-------------cccceeeEE-eccc---cc-eeeEecCCCe
Confidence 4466654433443 44478888887653322 22222 344677887 9998 55 8999999999
Q ss_pred EEEEEccCCCCceEeeecC----CcceEEEEEeCCCCeEEEe
Q 021291 233 ILVWDIRNPGIPLTAMKVH----LEPVLCLSIDESCNGGISG 270 (314)
Q Consensus 233 i~vwd~~~~~~~~~~~~~h----~~~v~~~~~~~~~~~l~s~ 270 (314)
+.-|-.. .+....+... ...|.+|.|-....+++.-
T Consensus 222 ~vQy~P~--leik~~ip~Pp~~e~yrvl~v~Wl~t~eflvvy 261 (1405)
T KOG3630|consen 222 EVQYEPS--LEIKSEIPEPPVEENYRVLSVTWLSTQEFLVVY 261 (1405)
T ss_pred EEEeecc--cceeecccCCCcCCCcceeEEEEecceeEEEEe
Confidence 9888755 2222222211 3579999996666666543
No 402
>PHA02790 Kelch-like protein; Provisional
Probab=94.37 E-value=3.3 Score=36.33 Aligned_cols=65 Identities=9% Similarity=0.014 Sum_probs=33.5
Q ss_pred CCCEEEEecCCC-----eEEEEeCCCCeEEEEEeccCCcccEEEEEEcccCCCCeEEEeecC--CeEEEEeCCCCC
Q 021291 29 TKPILFAGTTGG-----ELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRD--GTVKCWDIENGG 97 (314)
Q Consensus 29 ~~~~l~s~~~dg-----~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d--g~v~iwd~~~~~ 97 (314)
++.+++.||.++ .+..||..+++....-......... +++ .- ++...+.|+.+ .++..||..+++
T Consensus 271 ~~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~~r~~~-~~v-~~--~~~iYviGG~~~~~sve~ydp~~n~ 342 (480)
T PHA02790 271 GEVVYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSPRLYA-SGV-PA--NNKLYVVGGLPNPTSVERWFHGDAA 342 (480)
T ss_pred CCEEEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCchhhcc-eEE-EE--CCEEEEECCcCCCCceEEEECCCCe
Confidence 455667777653 5677887776543322111111111 222 22 55666777754 356777765543
No 403
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=93.94 E-value=0.38 Score=37.01 Aligned_cols=64 Identities=14% Similarity=0.244 Sum_probs=47.7
Q ss_pred EEEEeecCCcEEEEEccCCCCceE-e------ee-------cCCcceEEEEEeCCCCeEEEecCCCcEEEEecCCCeeeE
Q 021291 223 NVLAGYEDGSILVWDIRNPGIPLT-A------MK-------VHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTYVL 288 (314)
Q Consensus 223 ~l~~g~~dg~i~vwd~~~~~~~~~-~------~~-------~h~~~v~~~~~~~~~~~l~s~s~dg~i~iw~~~~~~~~~ 288 (314)
++++-+.+|.+++||+.+ .+.+. . +. .....|..+.++.+|.-|++-+ +|..+.|+.+-+.-+.
T Consensus 24 ~Ll~iT~~G~l~vWnl~~-~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~ls-ng~~y~y~~~L~~W~~ 101 (219)
T PF07569_consen 24 YLLAITSSGLLYVWNLKK-GKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLS-NGDSYSYSPDLGCWIR 101 (219)
T ss_pred EEEEEeCCCeEEEEECCC-CeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEe-CCCEEEeccccceeEE
Confidence 899999999999999997 33221 1 22 2456788899999998888775 5788999987665443
No 404
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.76 E-value=1.9 Score=37.15 Aligned_cols=61 Identities=20% Similarity=0.159 Sum_probs=42.9
Q ss_pred EEEEecCCCeEEEEeCCCCeEEEEEeccCCcccEEEEEEcccCCCCe-----EEEeecCCeEEEEeCCC
Q 021291 32 ILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNK-----VISQGRDGTVKCWDIEN 95 (314)
Q Consensus 32 ~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-----l~s~~~dg~v~iwd~~~ 95 (314)
+|.++.....++-.|++.|+.+..++.+.. |.-+.+.|...+.. -+.|-.|..|.-||++-
T Consensus 348 il~~~~~~~~l~klDIE~GKIVeEWk~~~d---i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv 413 (644)
T KOG2395|consen 348 ILMDGGEQDKLYKLDIERGKIVEEWKFEDD---INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRV 413 (644)
T ss_pred EeeCCCCcCcceeeecccceeeeEeeccCC---cceeeccCCcchhcccccccEEeecCCceEEecccc
Confidence 344566666788899999999999988753 77777777222222 23455678899999884
No 405
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=93.58 E-value=0.23 Score=37.57 Aligned_cols=65 Identities=12% Similarity=0.150 Sum_probs=45.2
Q ss_pred CCCEEEEecCCCeEEEEeCCCCeEEEEEeccCCcccEEEEEEcccCCCCeEEEe--ecCCeEEEEeCCCC
Q 021291 29 TKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQ--GRDGTVKCWDIENG 96 (314)
Q Consensus 29 ~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~--~~dg~v~iwd~~~~ 96 (314)
++.+..+++.||.|+.|++...+.+.....|.. .++..+..+. .+..+..+ |.|..++.|++..-
T Consensus 113 ~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~-~~~e~~ivv~--sd~~i~~a~~S~d~~~k~W~ve~~ 179 (238)
T KOG2444|consen 113 DSSLGCVGAQDGRIRACNIKPNKVLGYVGQHNF-ESGEELIVVG--SDEFLKIADTSHDRVLKKWNVEKI 179 (238)
T ss_pred ccceeEEeccCCceeeeccccCceeeeeccccC-CCcceeEEec--CCceEEeeccccchhhhhcchhhh
Confidence 556889999999999999998888877766663 2244444444 44566666 66777777776543
No 406
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=93.57 E-value=4.3 Score=34.80 Aligned_cols=161 Identities=11% Similarity=0.145 Sum_probs=82.0
Q ss_pred EEEEEEcccCCCCeEEEe-ecCC----eEEEEeCCCCCCCCCCeeeeecceeeEEEeeeeeccccccccCCCCcceeecc
Q 021291 65 IVSVATGPSIGLNKVISQ-GRDG----TVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYERE 139 (314)
Q Consensus 65 v~~~~~~~~~~~~~l~s~-~~dg----~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (314)
+....++| ++++++-+ +..| +|+++|+++++.+. .....+....
T Consensus 126 ~~~~~~Sp--dg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~--------d~i~~~~~~~--------------------- 174 (414)
T PF02897_consen 126 LGGFSVSP--DGKRLAYSLSDGGSEWYTLRVFDLETGKFLP--------DGIENPKFSS--------------------- 174 (414)
T ss_dssp EEEEEETT--TSSEEEEEEEETTSSEEEEEEEETTTTEEEE--------EEEEEEESEE---------------------
T ss_pred eeeeeECC--CCCEEEEEecCCCCceEEEEEEECCCCcCcC--------Ccccccccce---------------------
Confidence 44678888 98988743 4444 59999999985322 1111111110
Q ss_pred CCceeeecCCCCCCceeccCCCceEEEeecC---------cCeEEEEecCCCcee--eeecccccCCCCCcCCCCCce-e
Q 021291 140 VGETVDTDSLCDSKDDVPAEGPKYMAVAGEQ---------LSEVEIWDLNTAERC--TRLHQNSCGGSPNFSSKGRGM-C 207 (314)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~---------d~~i~vwd~~~~~~~--~~~~~~~~~~~~~h~~~~~~~-~ 207 (314)
+.|.++++.++.+.-.. ...|+.|.+.+...- ..+.. . .... .
T Consensus 175 --------------~~W~~d~~~~~y~~~~~~~~~~~~~~~~~v~~~~~gt~~~~d~lvfe~--------~---~~~~~~ 229 (414)
T PF02897_consen 175 --------------VSWSDDGKGFFYTRFDEDQRTSDSGYPRQVYRHKLGTPQSEDELVFEE--------P---DEPFWF 229 (414)
T ss_dssp --------------EEECTTSSEEEEEECSTTTSS-CCGCCEEEEEEETTS-GGG-EEEEC---------T---TCTTSE
T ss_pred --------------EEEeCCCCEEEEEEeCcccccccCCCCcEEEEEECCCChHhCeeEEee--------c---CCCcEE
Confidence 34888887776654332 335888888766433 33331 1 1122 4
Q ss_pred eeEEEecCCCCCCceEEEEeecC---CcEEEEEccCC---CCceEeeecCCcceE-EEEEeCCCCeEEEec--CCCcEEE
Q 021291 208 MAVQAYLPSKSQGFVNVLAGYED---GSILVWDIRNP---GIPLTAMKVHLEPVL-CLSIDESCNGGISGG--ADQKIVL 278 (314)
Q Consensus 208 ~~~~~~~p~~~~g~~~l~~g~~d---g~i~vwd~~~~---~~~~~~~~~h~~~v~-~~~~~~~~~~l~s~s--~dg~i~i 278 (314)
..+. .+++ ++.+++..... ..+++.|+... ......+......+. .+....+..++.|-. ..+.|.-
T Consensus 230 ~~~~-~s~d---~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~~~~~~~~~v~~~~~~~yi~Tn~~a~~~~l~~ 305 (414)
T PF02897_consen 230 VSVS-RSKD---GRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSPREDGVEYYVDHHGDRLYILTNDDAPNGRLVA 305 (414)
T ss_dssp EEEE-E-TT---SSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEESSSS-EEEEEEETTEEEEEE-TT-TT-EEEE
T ss_pred EEEE-ecCc---ccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEeCCCCceEEEEEccCCEEEEeeCCCCCCcEEEE
Confidence 5555 7776 66344444333 34788888762 233444444444443 344443323333431 2356666
Q ss_pred EecCCCe
Q 021291 279 YNLDHST 285 (314)
Q Consensus 279 w~~~~~~ 285 (314)
.++....
T Consensus 306 ~~l~~~~ 312 (414)
T PF02897_consen 306 VDLADPS 312 (414)
T ss_dssp EETTSTS
T ss_pred ecccccc
Confidence 6777665
No 407
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=93.48 E-value=6.2 Score=36.41 Aligned_cols=45 Identities=16% Similarity=0.277 Sum_probs=34.0
Q ss_pred CCceeeeEEEecCCCCCCceEEEEeecCCcEEEEEccCCCCceEeee
Q 021291 203 GRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMK 249 (314)
Q Consensus 203 ~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~~~~~ 249 (314)
....+..+. |+|.+..+. .|++=..|+++++||+..+..+...+.
T Consensus 145 ~~~~i~qv~-WhP~s~~~~-~l~vLtsdn~lR~y~~~~~~~p~~v~~ 189 (717)
T PF10168_consen 145 SSLEIKQVR-WHPWSESDS-HLVVLTSDNTLRLYDISDPQHPWQVLS 189 (717)
T ss_pred CCceEEEEE-EcCCCCCCC-eEEEEecCCEEEEEecCCCCCCeEEEE
Confidence 345677777 999865555 788888999999999987666655543
No 408
>COG4880 Secreted protein containing C-terminal beta-propeller domain distantly related to WD-40 repeats [General function prediction only]
Probab=93.42 E-value=4.2 Score=34.23 Aligned_cols=175 Identities=13% Similarity=0.102 Sum_probs=96.9
Q ss_pred CeEEEEeCCCCeEEEEEeccCCcccEEEEEEcccCCCCeEEEeecCCeEEEEeCCCCCCCCCCee-eeecceeeEEEeee
Q 021291 40 GELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGGLSSNPSL-TIKTNSYHFCKLSL 118 (314)
Q Consensus 40 g~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~-~~~~~~~~~~~~~~ 118 (314)
..|.|.| ++...+..+.+-....+|.++.|.. |-.+++|--.-.-+.+.|+.+.+..+ ++ .++.....
T Consensus 406 N~vYilD-e~lnvvGkltGl~~gERIYAvRf~g--dv~yiVTfrqtDPlfviDlsNPenPk--vlGeLKIPGfS------ 474 (603)
T COG4880 406 NAVYILD-ENLNVVGKLTGLAPGERIYAVRFVG--DVLYIVTFRQTDPLFVIDLSNPENPK--VLGELKIPGFS------ 474 (603)
T ss_pred ceeEEEc-CCCcEEEEEeccCCCceEEEEEEeC--ceEEEEEEeccCceEEEEcCCCCCCc--eeEEEecCCch------
Confidence 3577777 4567777887776667899999988 76677777776778899998766432 11 11111110
Q ss_pred eeccccccccCCCCcceeeccCCceeeecCCCCCCceeccCCCceEEEeecCcCe--EEEEecCCCceeeeecccccCCC
Q 021291 119 VKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQLSE--VEIWDLNTAERCTRLHQNSCGGS 196 (314)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~--i~vwd~~~~~~~~~~~~~~~~~~ 196 (314)
.-++|-|++.++-.|..+|. |.+||+.+....+....-
T Consensus 475 -----------------------------------~YLHpigen~~lGvG~~~g~vKiSLFdiSdl~~PkEv~~y----- 514 (603)
T COG4880 475 -----------------------------------EYLHPIGENRLLGVGAYQGGVKISLFDISDLAAPKEVSNY----- 514 (603)
T ss_pred -----------------------------------hhccccCCCcEEEeecccCCceEEEEeccCCCCchhhhhe-----
Confidence 11556677777666777775 556887754432221100
Q ss_pred CCcCCCCCce-eeeEEEecCCCCCCceEEEEeecCCcEEEEEccCCCCceEeeecCCcceEEEEEeCCCCeEEEec
Q 021291 197 PNFSSKGRGM-CMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGG 271 (314)
Q Consensus 197 ~~h~~~~~~~-~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s 271 (314)
.-+. ..+. ...-.+|.-|.. -..+++-+...|. ++.+.. +..+..-..|...+...-|..|..+++.++
T Consensus 515 -~l~~-~wspvf~dhHAFl~d~~-~~ifFlPay~~gy--if~ied-g~kl~k~~e~k~na~RA~fi~dylY~vg~~ 584 (603)
T COG4880 515 -TLSN-AWSPVFYDHHAFLYDPE-AEIFFLPAYLGGY--IFFIED-GSKLRKRAERKLNADRAFFIKDYLYLVGGN 584 (603)
T ss_pred -ehhh-hcchhhhccceeecCCc-ccEEEecccCccE--EEEEec-CceeeehhhhcccceeeEEecceEEEeccc
Confidence 0000 0000 000001332322 2225566666666 455555 444444446777777777888866655543
No 409
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=93.04 E-value=3.1 Score=35.85 Aligned_cols=58 Identities=12% Similarity=0.126 Sum_probs=45.0
Q ss_pred EEEEeecCCcEEEEEccCCCCceEeeecCCcceEEEEEeCCCCeEEEecCCCcEEEEecC
Q 021291 223 NVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLD 282 (314)
Q Consensus 223 ~l~~g~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~iw~~~ 282 (314)
++++++..|.|++||--. ......+.+....|..+..+.+|.++++.+. ..+.+-|+.
T Consensus 575 yIa~as~kGDirLyDRig-~rAKtalP~lG~aIk~idvta~Gk~ilaTCk-~yllL~d~~ 632 (776)
T COG5167 575 YIAAASRKGDIRLYDRIG-KRAKTALPGLGDAIKHIDVTANGKHILATCK-NYLLLTDVP 632 (776)
T ss_pred eEEEecCCCceeeehhhc-chhhhcCcccccceeeeEeecCCcEEEEeec-ceEEEEecc
Confidence 899999999999999653 3444556777889999999999998766654 467776664
No 410
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=93.01 E-value=1.7 Score=38.08 Aligned_cols=120 Identities=13% Similarity=0.165 Sum_probs=65.1
Q ss_pred CCCceeEEEEccC----CCEEEEecCCCeEEEEeCCC-----CeEEEEEec-cCCccc--EEEEEEcccCCCCeEEEeec
Q 021291 17 HRASVTDVCFHQT----KPILFAGTTGGELRIWDTVQ-----HRTVSSSWV-HSAAHG--IVSVATGPSIGLNKVISQGR 84 (314)
Q Consensus 17 h~~~v~~~~~~~~----~~~l~s~~~dg~v~iwd~~~-----~~~~~~~~~-~~~~~~--v~~~~~~~~~~~~~l~s~~~ 84 (314)
.-..|..+.|.|- -.-|++......|.||.+.. ++.+..-.. ...+-+ -..+-|+| ....|+.-..
T Consensus 55 qFEhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHP--k~~iL~VLT~ 132 (671)
T PF15390_consen 55 QFEHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCPSTTERNKLLMSQTCEIREPFPVLPQGCVWHP--KKAILTVLTA 132 (671)
T ss_pred ccceeeeeeecCcccCCCCceEEEeccceEEEEEeccCccccccceeeeeeeccCCcccCCCcccccC--CCceEEEEec
Confidence 3456889999984 22444455667899998752 233222111 111111 24677999 6566655444
Q ss_pred CCeEEEEeCCCCCCCCCCeeeeecceeeEEEeeeeeccccccccCCCCcceeeccCCceeeecCCCCCCceeccCCCceE
Q 021291 85 DGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYM 164 (314)
Q Consensus 85 dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (314)
...=.+++++...... ...++......| .+|..||++++
T Consensus 133 ~dvSV~~sV~~d~srV--kaDi~~~G~IhC---------------------------------------ACWT~DG~RLV 171 (671)
T PF15390_consen 133 RDVSVLPSVHCDSSRV--KADIKTSGLIHC---------------------------------------ACWTKDGQRLV 171 (671)
T ss_pred CceeEeeeeeeCCceE--EEeccCCceEEE---------------------------------------EEecCcCCEEE
Confidence 4333455554332211 122333333333 56888998888
Q ss_pred EEeecCcCeEEEEecC
Q 021291 165 AVAGEQLSEVEIWDLN 180 (314)
Q Consensus 165 ~~~g~~d~~i~vwd~~ 180 (314)
++.|+ .=.-++||-.
T Consensus 172 VAvGS-sLHSyiWd~~ 186 (671)
T PF15390_consen 172 VAVGS-SLHSYIWDSA 186 (671)
T ss_pred EEeCC-eEEEEEecCc
Confidence 87776 2456777754
No 411
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=92.85 E-value=2.9 Score=35.57 Aligned_cols=100 Identities=13% Similarity=0.143 Sum_probs=60.0
Q ss_pred ccEEEEEEcccCCCCeEEEeecCCeEEEEeCCCCCCCCCCeeeeecceeeEEEeeeeeccccccccCCCCcceeeccCCc
Q 021291 63 HGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGE 142 (314)
Q Consensus 63 ~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 142 (314)
..+.+++.+| .+++.++...-|.|.++|+.++..++ -.+......|.+-..........
T Consensus 308 R~~~~i~~sP--~~~laA~tDslGRV~LiD~~~~~vvr----mWKGYRdAqc~wi~~~~~~~~~~--------------- 366 (415)
T PF14655_consen 308 REGESICLSP--SGRLAAVTDSLGRVLLIDVARGIVVR----MWKGYRDAQCGWIEVPEEGDRDR--------------- 366 (415)
T ss_pred ceEEEEEECC--CCCEEEEEcCCCcEEEEECCCChhhh----hhccCccceEEEEEeeccccccc---------------
Confidence 4488999999 87888887778999999999987655 34444444454433221111000
Q ss_pred eeeecCCCCCCceeccCCCceEEEeecCcCeEEEEecCCCceeeeec
Q 021291 143 TVDTDSLCDSKDDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLH 189 (314)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~vwd~~~~~~~~~~~ 189 (314)
.......-.+....+|++-.-.-|.|.||+++++..+..+.
T Consensus 367 ------~~~~~~~~~~~~~l~LvIyaprRg~lEvW~~~~g~Rv~a~~ 407 (415)
T PF14655_consen 367 ------SNSNSPKSSSRFALFLVIYAPRRGILEVWSMRQGPRVAAFN 407 (415)
T ss_pred ------ccccccCCCCcceEEEEEEeccCCeEEEEecCCCCEEEEEE
Confidence 00000000011122344445557999999999999888776
No 412
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=92.78 E-value=6.5 Score=34.68 Aligned_cols=159 Identities=10% Similarity=0.128 Sum_probs=82.0
Q ss_pred CceeEEEEccCCCEE-EEec--CCCeEEEEeCCCCeEEEEEeccCCcccEEEEEEcccC--CCCeEEEeecCCeEEEEeC
Q 021291 19 ASVTDVCFHQTKPIL-FAGT--TGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSI--GLNKVISQGRDGTVKCWDI 93 (314)
Q Consensus 19 ~~v~~~~~~~~~~~l-~s~~--~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~--~~~~l~s~~~dg~v~iwd~ 93 (314)
.+|..++|. ||+.+ +|.- .+|.++.=| .+.+..| +.|..++|.|.. +...|++.-....|.+|.+
T Consensus 20 HPvhGlaWT-DGkqVvLT~L~l~~gE~kfGd---s~viGqF------EhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL 89 (671)
T PF15390_consen 20 HPVHGLAWT-DGKQVVLTDLQLHNGEPKFGD---SKVIGQF------EHVHGLSWAPPCTADTPALLAVQHKKHVTVWQL 89 (671)
T ss_pred ccccceEec-CCCEEEEEeeeeeCCccccCC---ccEeecc------ceeeeeeecCcccCCCCceEEEeccceEEEEEe
Confidence 467889997 55544 4432 233333222 2233333 349999999831 2235666666789999998
Q ss_pred CCCCCCCCCeeeeecceeeEEEeeeeeccccccccCCCCcceeeccCCceeeecCCCCCC-ceeccCCCceEEEeecCcC
Q 021291 94 ENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSK-DDVPAEGPKYMAVAGEQLS 172 (314)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~g~~d~ 172 (314)
..........+.. ..|.+ ...++.... ..|+|...-+.+.++. |
T Consensus 90 ~~s~~e~~K~l~s-----QtcEi----------------------------~e~~pvLpQGCVWHPk~~iL~VLT~~-d- 134 (671)
T PF15390_consen 90 CPSTTERNKLLMS-----QTCEI----------------------------REPFPVLPQGCVWHPKKAILTVLTAR-D- 134 (671)
T ss_pred ccCccccccceee-----eeeec----------------------------cCCcccCCCcccccCCCceEEEEecC-c-
Confidence 6322111001000 11111 001111111 6699987755544443 3
Q ss_pred eEEEEecCCCce--eeeecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEeecCCcEEEEEcc
Q 021291 173 EVEIWDLNTAER--CTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIR 239 (314)
Q Consensus 173 ~i~vwd~~~~~~--~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~ 239 (314)
.-.+++++.... ...++ ..+.+.|.+ |.+| |+.++++.+..=.-++||-.
T Consensus 135 vSV~~sV~~d~srVkaDi~-------------~~G~IhCAC-WT~D---G~RLVVAvGSsLHSyiWd~~ 186 (671)
T PF15390_consen 135 VSVLPSVHCDSSRVKADIK-------------TSGLIHCAC-WTKD---GQRLVVAVGSSLHSYIWDSA 186 (671)
T ss_pred eeEeeeeeeCCceEEEecc-------------CCceEEEEE-ecCc---CCEEEEEeCCeEEEEEecCc
Confidence 234555553332 22233 356677765 9998 55455555555667889864
No 413
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=92.47 E-value=0.89 Score=24.00 Aligned_cols=33 Identities=12% Similarity=0.232 Sum_probs=24.7
Q ss_pred cCCCEEEE-ecCCCeEEEEeCCCCeEEEEEeccC
Q 021291 28 QTKPILFA-GTTGGELRIWDTVQHRTVSSSWVHS 60 (314)
Q Consensus 28 ~~~~~l~s-~~~dg~v~iwd~~~~~~~~~~~~~~ 60 (314)
|++++|++ ...+++|.++|..+++.+..+....
T Consensus 1 pd~~~lyv~~~~~~~v~~id~~~~~~~~~i~vg~ 34 (42)
T TIGR02276 1 PDGTKLYVTNSGSNTVSVIDTATNKVIATIPVGG 34 (42)
T ss_pred CCCCEEEEEeCCCCEEEEEECCCCeEEEEEECCC
Confidence 46666655 4458899999999988888877643
No 414
>COG5276 Uncharacterized conserved protein [Function unknown]
Probab=92.37 E-value=4.8 Score=32.18 Aligned_cols=158 Identities=13% Similarity=0.127 Sum_probs=91.0
Q ss_pred EEEEEEcccCCCCeEEEeecCCeEEEEeCCCCCCCCCCeeeeecceeeEEEeeeeeccccccccCCCCcceeeccCCcee
Q 021291 65 IVSVATGPSIGLNKVISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETV 144 (314)
Q Consensus 65 v~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 144 (314)
+..+.++. ++...+.++.-++|.|+.+...... +-.+.......
T Consensus 89 ~~Dv~vse----~yvyvad~ssGL~IvDIS~P~sP~~-~~~lnt~gyay------------------------------- 132 (370)
T COG5276 89 FADVRVSE----EYVYVADWSSGLRIVDISTPDSPTL-IGFLNTDGYAY------------------------------- 132 (370)
T ss_pred hheeEecc----cEEEEEcCCCceEEEeccCCCCcce-eccccCCceEE-------------------------------
Confidence 66777765 6788888888899999988753220 01111111221
Q ss_pred eecCCCCCCceeccCCCceEEEeecCcCeEEEEecCCCceeeeecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEE
Q 021291 145 DTDSLCDSKDDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNV 224 (314)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l 224 (314)
.+.-.|+...+ ...|.-+.+.|+.+.......- .-....+....++ .+ |+ +-
T Consensus 133 ----------gv~vsGn~aYV--adlddgfLivdvsdpssP~lag---------rya~~~~d~~~v~-IS-----Gn-~A 184 (370)
T COG5276 133 ----------GVYVSGNYAYV--ADLDDGFLIVDVSDPSSPQLAG---------RYALPGGDTHDVA-IS-----GN-YA 184 (370)
T ss_pred ----------EEEecCCEEEE--eeccCcEEEEECCCCCCceeee---------eeccCCCCceeEE-Ee-----cC-eE
Confidence 24455665554 2324456778877654332111 1011111223333 55 44 67
Q ss_pred EEeecCCcEEEEEccCCCCceEeeecCCc-ceEEEEEeCCCCeEEEecCCCcEEEEecCCCeeeE
Q 021291 225 LAGYEDGSILVWDIRNPGIPLTAMKVHLE-PVLCLSIDESCNGGISGGADQKIVLYNLDHSTYVL 288 (314)
Q Consensus 225 ~~g~~dg~i~vwd~~~~~~~~~~~~~h~~-~v~~~~~~~~~~~l~s~s~dg~i~iw~~~~~~~~~ 288 (314)
..+..|+-+.+.|+.++..|+..-.-..+ .+.++..+++.-+++.. +--+.+-|....+..+
T Consensus 185 YvA~~d~GL~ivDVSnp~sPvli~~~n~g~g~~sv~vsdnr~y~vvy--~egvlivd~s~~ssp~ 247 (370)
T COG5276 185 YVAWRDGGLTIVDVSNPHSPVLIGSYNTGPGTYSVSVSDNRAYLVVY--DEGVLIVDVSGPSSPT 247 (370)
T ss_pred EEEEeCCCeEEEEccCCCCCeEEEEEecCCceEEEEecCCeeEEEEc--ccceEEEecCCCCCce
Confidence 77778999999999987777644333333 67888888886655544 3347777777766443
No 415
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=92.35 E-value=3.9 Score=36.79 Aligned_cols=100 Identities=14% Similarity=0.155 Sum_probs=61.1
Q ss_pred ecCcCeEEEEecCCCceeeeecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEeecCCcEEEEEcc-----CC-
Q 021291 168 GEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIR-----NP- 241 (314)
Q Consensus 168 g~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~-----~~- 241 (314)
.+....+.|||.+.+.....-. + ...+.+..+. |...+ +|+ .+++.+..+.|.+|.-. +.
T Consensus 47 ~~~~~~LtIWD~~~~~lE~~~~---------f--~~~~~I~dLD-Wtst~-d~q-siLaVGf~~~v~l~~Q~R~dy~~~~ 112 (631)
T PF12234_consen 47 DSSRSELTIWDTRSGVLEYEES---------F--SEDDPIRDLD-WTSTP-DGQ-SILAVGFPHHVLLYTQLRYDYTNKG 112 (631)
T ss_pred ECCCCEEEEEEcCCcEEEEeee---------e--cCCCceeece-eeecC-CCC-EEEEEEcCcEEEEEEccchhhhcCC
Confidence 4445789999999887443322 1 1245677777 76552 377 45555566788887532 10
Q ss_pred --CCceEee--ecCC-cceEEEEEeCCCCeEEEecCCCcEEEEecCC
Q 021291 242 --GIPLTAM--KVHL-EPVLCLSIDESCNGGISGGADQKIVLYNLDH 283 (314)
Q Consensus 242 --~~~~~~~--~~h~-~~v~~~~~~~~~~~l~s~s~dg~i~iw~~~~ 283 (314)
..++..+ ..|+ .+|.+..|-++|.+++.+ .+.+.|++-.-
T Consensus 113 p~w~~i~~i~i~~~T~h~Igds~Wl~~G~LvV~s--GNqlfv~dk~~ 157 (631)
T PF12234_consen 113 PSWAPIRKIDISSHTPHPIGDSIWLKDGTLVVGS--GNQLFVFDKWL 157 (631)
T ss_pred cccceeEEEEeecCCCCCccceeEecCCeEEEEe--CCEEEEECCCc
Confidence 1233333 3444 589999999999755443 45688887543
No 416
>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates. The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.
Probab=92.29 E-value=2.1 Score=38.31 Aligned_cols=67 Identities=12% Similarity=0.159 Sum_probs=41.4
Q ss_pred EEEEeecCCcEEEEEccC---CCCceEee-----------ec-----------CCcceEEEEEeC----CCCeEEEecCC
Q 021291 223 NVLAGYEDGSILVWDIRN---PGIPLTAM-----------KV-----------HLEPVLCLSIDE----SCNGGISGGAD 273 (314)
Q Consensus 223 ~l~~g~~dg~i~vwd~~~---~~~~~~~~-----------~~-----------h~~~v~~~~~~~----~~~~l~s~s~d 273 (314)
.++.+..||.+....... .+...... .+ -...+..++++. +..+|++.+.|
T Consensus 160 ~l~v~~~dG~ll~l~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~tl~~D 239 (547)
T PF11715_consen 160 NLVVSLQDGGLLRLKRSSGDSDGSVWSEELFNDSSWLRSLSGLFPWSYRGDNSSSSVAASLAVSSSEINDDTFLFTLSRD 239 (547)
T ss_dssp BEEEEESSS-EEEEEES----SSS-EE----STHHHHHCCTTTS-TT---SSSS---EEEEEE-----ETTTEEEEEETT
T ss_pred EEEEEECCCCeEEEECCcccCCCCeeEEEEeCCCchhhhhhCcCCcccccCCCCCCccceEEEecceeCCCCEEEEEeCC
Confidence 678888899888887664 12211111 00 012445555554 66789999999
Q ss_pred CcEEEEecCCCeeeEe
Q 021291 274 QKIVLYNLDHSTYVLF 289 (314)
Q Consensus 274 g~i~iw~~~~~~~~~~ 289 (314)
+.+|+||+.+++++..
T Consensus 240 ~~LRiW~l~t~~~~~~ 255 (547)
T PF11715_consen 240 HTLRIWSLETGQCLAT 255 (547)
T ss_dssp SEEEEEETTTTCEEEE
T ss_pred CeEEEEECCCCeEEEE
Confidence 9999999999999554
No 417
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=92.22 E-value=5.4 Score=32.43 Aligned_cols=70 Identities=20% Similarity=0.226 Sum_probs=40.6
Q ss_pred CCceeEEEEccCCCEEEEecCCCeEEEEeCCCCeEEEEEeccCCcccEEEEEEcccCCCCeEEEeecCCeEEEEe
Q 021291 18 RASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWD 92 (314)
Q Consensus 18 ~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd 92 (314)
.+.+..+..++||+++++++.-....-||-....-...-+... .+|..|.|.| ++.+.+ ....|.|+.=+
T Consensus 144 ~gs~~~~~r~~dG~~vavs~~G~~~~s~~~G~~~w~~~~r~~~--~riq~~gf~~--~~~lw~-~~~Gg~~~~s~ 213 (302)
T PF14870_consen 144 SGSINDITRSSDGRYVAVSSRGNFYSSWDPGQTTWQPHNRNSS--RRIQSMGFSP--DGNLWM-LARGGQIQFSD 213 (302)
T ss_dssp ---EEEEEE-TTS-EEEEETTSSEEEEE-TT-SS-EEEE--SS--S-EEEEEE-T--TS-EEE-EETTTEEEEEE
T ss_pred cceeEeEEECCCCcEEEEECcccEEEEecCCCccceEEccCcc--ceehhceecC--CCCEEE-EeCCcEEEEcc
Confidence 4567888888999999888776666788754322222222233 5699999999 855555 44788888776
No 418
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=92.00 E-value=4.6 Score=31.13 Aligned_cols=78 Identities=9% Similarity=-0.011 Sum_probs=50.0
Q ss_pred eeEEEecCCCCCCceEEEEeecCCcEEEEEccCC-C-----CceEeeec---CCc-ceEEEEEeCCCCeEEEecCCCcEE
Q 021291 208 MAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNP-G-----IPLTAMKV---HLE-PVLCLSIDESCNGGISGGADQKIV 277 (314)
Q Consensus 208 ~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~-~-----~~~~~~~~---h~~-~v~~~~~~~~~~~l~s~s~dg~i~ 277 (314)
..++ |+.+ -+.+.+.-+.+-.|.-||.+.+ + +.+..++. ... .--.++.+.+|.+.++.=..++|.
T Consensus 161 Ngl~-Wd~d---~K~fY~iDsln~~V~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~ng~~V~ 236 (310)
T KOG4499|consen 161 NGLA-WDSD---AKKFYYIDSLNYEVDAYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFNGGTVQ 236 (310)
T ss_pred cccc-cccc---CcEEEEEccCceEEeeeecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEecCcEEE
Confidence 3444 7755 3336777788888988884321 2 22323322 111 223466688888888877888999
Q ss_pred EEecCCCeeeEe
Q 021291 278 LYNLDHSTYVLF 289 (314)
Q Consensus 278 iw~~~~~~~~~~ 289 (314)
..|..+|+.+..
T Consensus 237 ~~dp~tGK~L~e 248 (310)
T KOG4499|consen 237 KVDPTTGKILLE 248 (310)
T ss_pred EECCCCCcEEEE
Confidence 999999998875
No 419
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=91.87 E-value=11 Score=35.21 Aligned_cols=71 Identities=17% Similarity=0.249 Sum_probs=45.4
Q ss_pred CCEEEEecCCCeEEEEeCCCCeEEEEEeccCCc----------ccEEEEEEcccCCCCeEEEeec----------CCeEE
Q 021291 30 KPILFAGTTGGELRIWDTVQHRTVSSSWVHSAA----------HGIVSVATGPSIGLNKVISQGR----------DGTVK 89 (314)
Q Consensus 30 ~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~----------~~v~~~~~~~~~~~~~l~s~~~----------dg~v~ 89 (314)
+..++.++.|+.|.-.|.++|+.+..+.....- ..-..+.-.|.-.++.++.++. +|.|+
T Consensus 260 ~~rV~~~T~Dg~LiALDA~TGk~~W~fg~~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~ 339 (764)
T TIGR03074 260 ARRIILPTSDARLIALDADTGKLCEDFGNNGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIR 339 (764)
T ss_pred CCEEEEecCCCeEEEEECCCCCEEEEecCCCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEE
Confidence 447888999999999999999998776432100 0000111112112345666643 68899
Q ss_pred EEeCCCCCCCC
Q 021291 90 CWDIENGGLSS 100 (314)
Q Consensus 90 iwd~~~~~~~~ 100 (314)
-+|.+++++..
T Consensus 340 A~Da~TGkl~W 350 (764)
T TIGR03074 340 AFDVNTGALVW 350 (764)
T ss_pred EEECCCCcEee
Confidence 99999998765
No 420
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=91.53 E-value=7.5 Score=32.62 Aligned_cols=234 Identities=11% Similarity=0.005 Sum_probs=97.7
Q ss_pred EEEEccCCCEEEEecCCCeEEEEeCCCCeEEEEEeccCCcccEEEEEEcccCCCCeEEEeec------------------
Q 021291 23 DVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGR------------------ 84 (314)
Q Consensus 23 ~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~------------------ 84 (314)
...++++.+.++-......|+-.|+++.+....+.... ..+-...|....++..++-.-.
T Consensus 85 g~~~s~~~~~~~Yv~~~~~l~~vdL~T~e~~~vy~~p~--~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~ 162 (386)
T PF14583_consen 85 GGFLSPDDRALYYVKNGRSLRRVDLDTLEERVVYEVPD--DWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFY 162 (386)
T ss_dssp T-EE-TTSSEEEEEETTTEEEEEETTT--EEEEEE--T--TEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHH
T ss_pred ceEEecCCCeEEEEECCCeEEEEECCcCcEEEEEECCc--ccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHH
Confidence 45666777776555455678888999887766666665 3355567754325555443211
Q ss_pred ----CCeEEEEeCCCCCCCCCCeeeeecceeeEEEeeeeeccccccccC---CC-CcceeeccCCceeeecCCCCCC---
Q 021291 85 ----DGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQA---NE-PKDCYEREVGETVDTDSLCDSK--- 153 (314)
Q Consensus 85 ----dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~-~~~~~~~~~~~~~~~~~~~~~~--- 153 (314)
...|.--|+.+++... ++.-.. -.....+++........--. .. ..++|.++........+..+..
T Consensus 163 ~a~p~~~i~~idl~tG~~~~--v~~~~~-wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~~~~e~ 239 (386)
T PF14583_consen 163 EARPHCRIFTIDLKTGERKV--VFEDTD-WLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRRMEGES 239 (386)
T ss_dssp HC---EEEEEEETTT--EEE--EEEESS--EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS---EESS---TTEE
T ss_pred hhCCCceEEEEECCCCceeE--EEecCc-cccCcccCCCCCCEEEEeccCCcceeceEEEEEEcCCCcceeeecCCCCcc
Confidence 1234455666665311 221111 11122222222111111011 11 1255655544333333333322
Q ss_pred ---ceeccCCCceEEEee---cCcCeEEEEecCCCceeeeecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEe
Q 021291 154 ---DDVPAEGPKYMAVAG---EQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAG 227 (314)
Q Consensus 154 ---~~~~~~~~~~~~~~g---~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g 227 (314)
--|.|+|..+...+. ..+..|.-+|+.+++....... ..+.-.. -+++ |. +++--
T Consensus 240 ~gHEfw~~DG~~i~y~~~~~~~~~~~i~~~d~~t~~~~~~~~~--------------p~~~H~~-ss~D---g~-L~vGD 300 (386)
T PF14583_consen 240 VGHEFWVPDGSTIWYDSYTPGGQDFWIAGYDPDTGERRRLMEM--------------PWCSHFM-SSPD---GK-LFVGD 300 (386)
T ss_dssp EEEEEE-TTSS-EEEEEEETTT--EEEEEE-TTT--EEEEEEE---------------SEEEEE-E-TT---SS-EEEEE
T ss_pred cccccccCCCCEEEEEeecCCCCceEEEeeCCCCCCceEEEeC--------------CceeeeE-EcCC---CC-EEEec
Confidence 458899988766443 3345678888888765432221 1222222 4454 54 44332
Q ss_pred ecCC----------------cEEEEEccCCCCceEeeecCC----------c-ceEEEEEeCCCCeE-EEecCCCcEEEE
Q 021291 228 YEDG----------------SILVWDIRNPGIPLTAMKVHL----------E-PVLCLSIDESCNGG-ISGGADQKIVLY 279 (314)
Q Consensus 228 ~~dg----------------~i~vwd~~~~~~~~~~~~~h~----------~-~v~~~~~~~~~~~l-~s~s~dg~i~iw 279 (314)
+.|. -|++++... +.. ..+..|. . .=....|+||++++ .++...|...||
T Consensus 301 G~d~p~~v~~~~~~~~~~~p~i~~~~~~~-~~~-~~l~~h~~sw~v~~~~~q~~hPhp~FSPDgk~VlF~Sd~~G~~~vY 378 (386)
T PF14583_consen 301 GGDAPVDVADAGGYKIENDPWIYLFDVEA-GRF-RKLARHDTSWKVLDGDRQVTHPHPSFSPDGKWVLFRSDMEGPPAVY 378 (386)
T ss_dssp E-------------------EEEEEETTT-TEE-EEEEE-------BTTBSSTT----EE-TTSSEEEEEE-TTSS-EEE
T ss_pred CCCCCccccccccceecCCcEEEEecccc-Cce-eeeeeccCcceeecCCCccCCCCCccCCCCCEEEEECCCCCCccEE
Confidence 3321 456677764 322 2222221 1 12457899999986 555567877777
Q ss_pred ecC
Q 021291 280 NLD 282 (314)
Q Consensus 280 ~~~ 282 (314)
-++
T Consensus 379 ~v~ 381 (386)
T PF14583_consen 379 LVE 381 (386)
T ss_dssp EEE
T ss_pred EEe
Confidence 544
No 421
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=91.42 E-value=3.5 Score=28.65 Aligned_cols=72 Identities=22% Similarity=0.330 Sum_probs=47.8
Q ss_pred eEEEEccCCCEEEEecCCCeEEEEeCCCC--------eEEEEEeccCCcccEEEEEEcc---cCCCCeEEEeecCCeEEE
Q 021291 22 TDVCFHQTKPILFAGTTGGELRIWDTVQH--------RTVSSSWVHSAAHGIVSVATGP---SIGLNKVISQGRDGTVKC 90 (314)
Q Consensus 22 ~~~~~~~~~~~l~s~~~dg~v~iwd~~~~--------~~~~~~~~~~~~~~v~~~~~~~---~~~~~~l~s~~~dg~v~i 90 (314)
..-.|......|+.++.-|.|.|++.... ..++.+... ..|++|+-.+ ..+.+.|+.|+. ..|..
T Consensus 2 aiGkfDG~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LNin---~~italaaG~l~~~~~~D~LliGt~-t~lla 77 (136)
T PF14781_consen 2 AIGKFDGVHPCLACATTGGKVFIHNPHERGQRTGRQDSDISFLNIN---QEITALAAGRLKPDDGRDCLLIGTQ-TSLLA 77 (136)
T ss_pred eEEEeCCCceeEEEEecCCEEEEECCCccccccccccCceeEEECC---CceEEEEEEecCCCCCcCEEEEecc-ceEEE
Confidence 34466666678888999999999987633 234444433 3377775433 334566777765 48999
Q ss_pred EeCCCCC
Q 021291 91 WDIENGG 97 (314)
Q Consensus 91 wd~~~~~ 97 (314)
||+..+.
T Consensus 78 YDV~~N~ 84 (136)
T PF14781_consen 78 YDVENNS 84 (136)
T ss_pred EEcccCc
Confidence 9998775
No 422
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=90.88 E-value=4 Score=28.37 Aligned_cols=104 Identities=18% Similarity=0.153 Sum_probs=60.9
Q ss_pred ecCcCeEEEEecCCCc--------eeeeecccccCCCCCcCCCCCceeeeEE--EecCCCCCCceEEEEeecCCcEEEEE
Q 021291 168 GEQLSEVEIWDLNTAE--------RCTRLHQNSCGGSPNFSSKGRGMCMAVQ--AYLPSKSQGFVNVLAGYEDGSILVWD 237 (314)
Q Consensus 168 g~~d~~i~vwd~~~~~--------~~~~~~~~~~~~~~~h~~~~~~~~~~~~--~~~p~~~~g~~~l~~g~~dg~i~vwd 237 (314)
++.-++|.|+++.... .+..+.. ...+.+++ .|.|+. ++..|+.|+. ..|..||
T Consensus 16 aT~~gKV~IH~ph~~~~~~~~~~~~i~~LNi-------------n~~italaaG~l~~~~--~~D~LliGt~-t~llaYD 79 (136)
T PF14781_consen 16 ATTGGKVFIHNPHERGQRTGRQDSDISFLNI-------------NQEITALAAGRLKPDD--GRDCLLIGTQ-TSLLAYD 79 (136)
T ss_pred EecCCEEEEECCCccccccccccCceeEEEC-------------CCceEEEEEEecCCCC--CcCEEEEecc-ceEEEEE
Confidence 3345899999876432 2333331 22344443 366542 2227788775 4789999
Q ss_pred ccCCCCceEeeecCCcceEEEEE----eCCCCeEEEecCCCcEEEEecCCCeeeEee
Q 021291 238 IRNPGIPLTAMKVHLEPVLCLSI----DESCNGGISGGADQKIVLYNLDHSTYVLFG 290 (314)
Q Consensus 238 ~~~~~~~~~~~~~h~~~v~~~~~----~~~~~~l~s~s~dg~i~iw~~~~~~~~~~~ 290 (314)
+.+ ..-+. .+.-.+.|+++.+ ..... |+..+.+..|.-||.+..+..|..
T Consensus 80 V~~-N~d~F-yke~~DGvn~i~~g~~~~~~~~-l~ivGGncsi~Gfd~~G~e~fWtV 133 (136)
T PF14781_consen 80 VEN-NSDLF-YKEVPDGVNAIVIGKLGDIPSP-LVIVGGNCSIQGFDYEGNEIFWTV 133 (136)
T ss_pred ccc-Cchhh-hhhCccceeEEEEEecCCCCCc-EEEECceEEEEEeCCCCcEEEEEe
Confidence 986 33222 2233577888877 22333 444555778888998777666654
No 423
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=90.75 E-value=7.4 Score=31.16 Aligned_cols=190 Identities=9% Similarity=0.097 Sum_probs=102.5
Q ss_pred ccEEEEEEcccCCCCeEEEeecCCeEEEEeCCCCCCCCCCeeeeecceeeEEEeeeeeccccccccCCCCcceeeccCCc
Q 021291 63 HGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGE 142 (314)
Q Consensus 63 ~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 142 (314)
..|.++.|+| +.+.|++......-.+|=..+|+++. .+.+...... ..
T Consensus 86 ~nvS~LTynp--~~rtLFav~n~p~~iVElt~~Gdlir--tiPL~g~~Dp----------E~------------------ 133 (316)
T COG3204 86 ANVSSLTYNP--DTRTLFAVTNKPAAIVELTKEGDLIR--TIPLTGFSDP----------ET------------------ 133 (316)
T ss_pred ccccceeeCC--CcceEEEecCCCceEEEEecCCceEE--EecccccCCh----------hH------------------
Confidence 3399999999 88888887777766666656666544 1111111000 00
Q ss_pred eeeecCCCCCCceeccCCCceEEEeecCcCeEEEEecCCCceeeeecc-cccCCCCCcCCCCCceeeeEEEecCCCCCCc
Q 021291 143 TVDTDSLCDSKDDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQ-NSCGGSPNFSSKGRGMCMAVQAYLPSKSQGF 221 (314)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~vwd~~~~~~~~~~~~-~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~ 221 (314)
+.+.-+| .++++-..++.+.++.+........+.. .-.. +.....+...-.++ |.|. ++
T Consensus 134 -----------Ieyig~n--~fvi~dER~~~l~~~~vd~~t~~~~~~~~~i~L---~~~~k~N~GfEGlA-~d~~---~~ 193 (316)
T COG3204 134 -----------IEYIGGN--QFVIVDERDRALYLFTVDADTTVISAKVQKIPL---GTTNKKNKGFEGLA-WDPV---DH 193 (316)
T ss_pred -----------eEEecCC--EEEEEehhcceEEEEEEcCCccEEeccceEEec---cccCCCCcCceeee-cCCC---Cc
Confidence 3343443 3444666778888877665432222221 0000 11111122334455 9987 33
Q ss_pred eEEEEeecCCcEEEEEccCCCCc--eEeeecCC-------cceEEEEEeC-CCCeEEEecCCCcEEEEecCCCee-----
Q 021291 222 VNVLAGYEDGSILVWDIRNPGIP--LTAMKVHL-------EPVLCLSIDE-SCNGGISGGADQKIVLYNLDHSTY----- 286 (314)
Q Consensus 222 ~~l~~g~~dg~i~vwd~~~~~~~--~~~~~~h~-------~~v~~~~~~~-~~~~l~s~s~dg~i~iw~~~~~~~----- 286 (314)
.|+.+-+-.-+.||........ +.....+. ..|.++.|++ .+.+|+-+..++.+.-.|....-.
T Consensus 194 -~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~DvSgl~~~~~~~~LLVLS~ESr~l~Evd~~G~~~~~lsL 272 (316)
T COG3204 194 -RLFVAKERNPIGIFEVTQSPSSLSVHASLDPTADRDLFVLDVSGLEFNAITNSLLVLSDESRRLLEVDLSGEVIELLSL 272 (316)
T ss_pred -eEEEEEccCCcEEEEEecCCcccccccccCcccccceEeeccccceecCCCCcEEEEecCCceEEEEecCCCeeeeEEe
Confidence 6777777777888876631111 11111222 2466778864 455667777777777777664421
Q ss_pred ----------eEeeeeeeecCCCceecee
Q 021291 287 ----------VLFGIGFVCDQEGNKFGTT 305 (314)
Q Consensus 287 ----------~~~~~~~~~~~~~~~~~~~ 305 (314)
+.+..|++.+++|.++..+
T Consensus 273 ~~g~~gL~~dipqaEGiamDd~g~lYIvS 301 (316)
T COG3204 273 TKGNHGLSSDIPQAEGIAMDDDGNLYIVS 301 (316)
T ss_pred ccCCCCCcccCCCcceeEECCCCCEEEEe
Confidence 1135677777877766554
No 424
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=90.62 E-value=1.5 Score=23.06 Aligned_cols=31 Identities=16% Similarity=0.239 Sum_probs=23.4
Q ss_pred cCCCceEEEeecCcCeEEEEecCCCceeeeec
Q 021291 158 AEGPKYMAVAGEQLSEVEIWDLNTAERCTRLH 189 (314)
Q Consensus 158 ~~~~~~~~~~g~~d~~i~vwd~~~~~~~~~~~ 189 (314)
|+++.+++ +...+++|.++|..+++.+..+.
T Consensus 1 pd~~~lyv-~~~~~~~v~~id~~~~~~~~~i~ 31 (42)
T TIGR02276 1 PDGTKLYV-TNSGSNTVSVIDTATNKVIATIP 31 (42)
T ss_pred CCCCEEEE-EeCCCCEEEEEECCCCeEEEEEE
Confidence 46676765 45457899999999888777766
No 425
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=90.56 E-value=16 Score=34.57 Aligned_cols=246 Identities=12% Similarity=0.053 Sum_probs=120.4
Q ss_pred ceeEEEEccCCCEEEEecCCCeEEEEeC--CCCeEEEEEeccCCcccEEEEEEcccCCCCeEEEeecCCeEEEEeCCCCC
Q 021291 20 SVTDVCFHQTKPILFAGTTGGELRIWDT--VQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGG 97 (314)
Q Consensus 20 ~v~~~~~~~~~~~l~s~~~dg~v~iwd~--~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~ 97 (314)
.|.-..|-.|..+|.++..||.+.-|.+ .++..-..-+.+-+..++.--.|+.. ..+.+++++ |+-..+|--+..-
T Consensus 585 SIl~~~~e~d~~yLlvalgdG~l~~fv~d~~tg~lsd~Kk~~lGt~P~~Lr~f~sk-~~t~vfa~s-drP~viY~~n~kL 662 (1096)
T KOG1897|consen 585 SILLTTFEGDIHYLLVALGDGALLYFVLDINTGQLSDRKKVTLGTQPISLRTFSSK-SRTAVFALS-DRPTVIYSSNGKL 662 (1096)
T ss_pred heeeEEeeccceEEEEEcCCceEEEEEEEcccceEccccccccCCCCcEEEEEeeC-CceEEEEeC-CCCEEEEecCCcE
Confidence 3444555556789999999999886654 44443322222333345666667662 223444444 5555555544321
Q ss_pred CCCCCeeeeec-ceeeEEEeeeeeccccccccCCCCcceeeccCCceee-ecCCCCCC---ceeccCCCceEEEeecC--
Q 021291 98 LSSNPSLTIKT-NSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVD-TDSLCDSK---DDVPAEGPKYMAVAGEQ-- 170 (314)
Q Consensus 98 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~---~~~~~~~~~~~~~~g~~-- 170 (314)
+.. .+.. .-...|.++....+.......++...+..++.-+.+. ...+-+.. +++.+.. .++.+.+..
T Consensus 663 v~s----pls~kev~~~c~f~s~a~~d~l~~~~~~~l~i~tid~iqkl~irtvpl~~~prrI~~q~~s-l~~~v~s~r~e 737 (1096)
T KOG1897|consen 663 VYS----PLSLKEVNHMCPFNSDAYPDSLASANGGALTIGTIDEIQKLHIRTVPLGESPRRICYQESS-LTFGVLSNRIE 737 (1096)
T ss_pred EEe----ccchHHhhhhcccccccCCceEEEecCCceEEEEecchhhcceeeecCCCChhheEecccc-eEEEEEecccc
Confidence 110 1111 1223444544444444455555555555554433211 11221111 5555522 222221110
Q ss_pred --------c---CeEEEEecCCCceeeeecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEeec----------
Q 021291 171 --------L---SEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYE---------- 229 (314)
Q Consensus 171 --------d---~~i~vwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~---------- 229 (314)
. ..++++|..+.+.+...+. ...+.-..+.++. |..|. +. ++++|..
T Consensus 738 ~~~~~~~ee~~~s~l~vlD~nTf~vl~~hef--------~~~E~~~Si~s~~-~~~d~--~t-~~vVGT~~v~Pde~ep~ 805 (1096)
T KOG1897|consen 738 SSAEYYGEEYEVSFLRVLDQNTFEVLSSHEF--------ERNETALSIISCK-FTDDP--NT-YYVVGTGLVYPDENEPV 805 (1096)
T ss_pred cchhhcCCcceEEEEEEecCCceeEEeeccc--------cccceeeeeeeee-ecCCC--ce-EEEEEEEeeccCCCCcc
Confidence 1 2477788777665554432 1111122344454 76652 33 6777652
Q ss_pred CCcEEEEEccCCCCceEeeecC--CcceEEEEEeCCCCeEEEecCCCcEEEEecCCCeeeE
Q 021291 230 DGSILVWDIRNPGIPLTAMKVH--LEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTYVL 288 (314)
Q Consensus 230 dg~i~vwd~~~~~~~~~~~~~h--~~~v~~~~~~~~~~~l~s~s~dg~i~iw~~~~~~~~~ 288 (314)
.|.|.+|.... .+.+.....+ .+.+.++.. -+|++||. -...|++|++.+++.+.
T Consensus 806 ~GRIivfe~~e-~~~L~~v~e~~v~Gav~aL~~-fngkllA~--In~~vrLye~t~~~eLr 862 (1096)
T KOG1897|consen 806 NGRIIVFEFEE-LNSLELVAETVVKGAVYALVE-FNGKLLAG--INQSVRLYEWTTERELR 862 (1096)
T ss_pred cceEEEEEEec-CCceeeeeeeeeccceeehhh-hCCeEEEe--cCcEEEEEEccccceeh
Confidence 47788887775 4444433322 233444332 35555544 46689999999886554
No 426
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=90.45 E-value=11 Score=32.46 Aligned_cols=41 Identities=10% Similarity=0.238 Sum_probs=28.6
Q ss_pred CCCceEEecCCCCceeEEEEccCCCEEEEecCCCeEEEEeCC
Q 021291 7 PPDPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTV 48 (314)
Q Consensus 7 ~~~~~~~l~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~ 48 (314)
.++++.++.=-.+.|.++.|+.+. .|+....||.++++|+.
T Consensus 69 sG~ll~~i~w~~~~iv~~~wt~~e-~LvvV~~dG~v~vy~~~ 109 (410)
T PF04841_consen 69 SGKLLSSIPWDSGRIVGMGWTDDE-ELVVVQSDGTVRVYDLF 109 (410)
T ss_pred CCCEeEEEEECCCCEEEEEECCCC-eEEEEEcCCEEEEEeCC
Confidence 344444443233788888898754 56667899999999986
No 427
>PRK10115 protease 2; Provisional
Probab=89.99 E-value=16 Score=33.84 Aligned_cols=72 Identities=7% Similarity=-0.085 Sum_probs=46.3
Q ss_pred ceeEEEEccCCCEEEEecC-----CCeEEEEeCCCCeEEEEEeccCCcccEEEEEEcccCCCCeEEEeecC------CeE
Q 021291 20 SVTDVCFHQTKPILFAGTT-----GGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRD------GTV 88 (314)
Q Consensus 20 ~v~~~~~~~~~~~l~s~~~-----dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d------g~v 88 (314)
.+..+.++|||++|+.+.. .-.|++-|+.+++.+...-... -..++|.+ |++.|+-...+ ..|
T Consensus 128 ~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i~~~----~~~~~w~~--D~~~~~y~~~~~~~~~~~~v 201 (686)
T PRK10115 128 TLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPELLDNV----EPSFVWAN--DSWTFYYVRKHPVTLLPYQV 201 (686)
T ss_pred EEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCccccCc----ceEEEEee--CCCEEEEEEecCCCCCCCEE
Confidence 3667889999998875432 3368899998876432211111 14689998 87766654332 367
Q ss_pred EEEeCCCCC
Q 021291 89 KCWDIENGG 97 (314)
Q Consensus 89 ~iwd~~~~~ 97 (314)
..+++.++.
T Consensus 202 ~~h~lgt~~ 210 (686)
T PRK10115 202 WRHTIGTPA 210 (686)
T ss_pred EEEECCCCh
Confidence 888888773
No 428
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=89.91 E-value=0.045 Score=46.03 Aligned_cols=107 Identities=14% Similarity=0.228 Sum_probs=68.8
Q ss_pred ceeccCCCceEEEeecCcCeEEEEecCCCceeeeecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEeecCCcE
Q 021291 154 DDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSI 233 (314)
Q Consensus 154 ~~~~~~~~~~~~~~g~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i 233 (314)
++|..+++.+++. ....+.+.+||+.+... .++... +. ...++..|++-.+ .++.|...|.+
T Consensus 80 m~wDkegdvlavl-Aek~~piylwd~n~eyt-qqLE~g------g~------~s~sll~wsKg~~----el~ig~~~gn~ 141 (615)
T KOG2247|consen 80 MAWDKEGDVLAVL-AEKTGPIYLWDVNSEYT-QQLESG------GT------SSKSLLAWSKGTP----ELVIGNNAGNI 141 (615)
T ss_pred hhhccccchhhhh-hhcCCCeeechhhhhhH-HHHhcc------Cc------chHHHHhhccCCc----cccccccccce
Confidence 4566777766554 44468899999975432 222210 11 1111123877533 78888899999
Q ss_pred EEEEccCCCCceEeeecCCcceEEEEEeCCCCeEEEecCCCcEEEEe
Q 021291 234 LVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYN 280 (314)
Q Consensus 234 ~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~iw~ 280 (314)
.|++..+ .+.+.....|...++++++.+.+. .+.++.|..+.+-.
T Consensus 142 viynhgt-sR~iiv~Gkh~RRgtq~av~lEd~-vil~dcd~~L~v~~ 186 (615)
T KOG2247|consen 142 VIYNHGT-SRRIIVMGKHQRRGTQIAVTLEDY-VILCDCDNTLSVTT 186 (615)
T ss_pred EEEeccc-hhhhhhhcccccceeEEEecccce-eeecCcHHHHHHhh
Confidence 9999987 555555555999999999988775 56666666554433
No 429
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=89.78 E-value=10 Score=36.84 Aligned_cols=34 Identities=18% Similarity=0.204 Sum_probs=31.0
Q ss_pred cCCcceEEEEEeCCCCeEEEecCCCcEEEEecCC
Q 021291 250 VHLEPVLCLSIDESCNGGISGGADQKIVLYNLDH 283 (314)
Q Consensus 250 ~h~~~v~~~~~~~~~~~l~s~s~dg~i~iw~~~~ 283 (314)
.+.++|..+..+.....+.+-+..|+|.+|++..
T Consensus 240 ~~~dpI~qi~ID~SR~IlY~lsek~~v~~Y~i~~ 273 (1311)
T KOG1900|consen 240 SSKDPIRQITIDNSRNILYVLSEKGTVSAYDIGG 273 (1311)
T ss_pred CCCCcceeeEeccccceeeeeccCceEEEEEccC
Confidence 5678999999999888999999999999999987
No 430
>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []). The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].
Probab=89.71 E-value=4.2 Score=30.00 Aligned_cols=33 Identities=21% Similarity=0.230 Sum_probs=25.3
Q ss_pred cEEEEEEccc----CCCCeEEEeecCCeEEEEeCCCC
Q 021291 64 GIVSVATGPS----IGLNKVISQGRDGTVKCWDIENG 96 (314)
Q Consensus 64 ~v~~~~~~~~----~~~~~l~s~~~dg~v~iwd~~~~ 96 (314)
.|..++|||. +.+-.|++...++.|.||.....
T Consensus 87 ~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~~ 123 (173)
T PF12657_consen 87 QVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPGN 123 (173)
T ss_pred cEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCCC
Confidence 5899999993 12236788899999999987643
No 431
>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates. The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.
Probab=89.45 E-value=0.98 Score=40.34 Aligned_cols=40 Identities=15% Similarity=0.297 Sum_probs=29.5
Q ss_pred CceeEEEEcc----CCCEEEEecCCCeEEEEeCCCCeEEEEEec
Q 021291 19 ASVTDVCFHQ----TKPILFAGTTGGELRIWDTVQHRTVSSSWV 58 (314)
Q Consensus 19 ~~v~~~~~~~----~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~ 58 (314)
..+..++++. +..+|++.+.|+++|+||+.+++++.+...
T Consensus 215 ~~~~~~~~~~~~~~~~~~l~tl~~D~~LRiW~l~t~~~~~~~~~ 258 (547)
T PF11715_consen 215 SVAASLAVSSSEINDDTFLFTLSRDHTLRIWSLETGQCLATIDL 258 (547)
T ss_dssp --EEEEEE-----ETTTEEEEEETTSEEEEEETTTTCEEEEEET
T ss_pred CccceEEEecceeCCCCEEEEEeCCCeEEEEECCCCeEEEEecc
Confidence 3445556655 677999999999999999999999776543
No 432
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=89.20 E-value=9.6 Score=30.17 Aligned_cols=109 Identities=8% Similarity=0.003 Sum_probs=58.1
Q ss_pred ceeccCCCceEEEee-cCcCeEEEEecCCCceeeeecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEeecCCc
Q 021291 154 DDVPAEGPKYMAVAG-EQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGS 232 (314)
Q Consensus 154 ~~~~~~~~~~~~~~g-~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~ 232 (314)
.+++++++.+.++.. .....++++.. +........ +. ...... |+++ +. ..+....+..
T Consensus 29 ~AvS~dg~~~A~v~~~~~~~~L~~~~~--~~~~~~~~~-------g~------~l~~PS-~d~~---g~-~W~v~~~~~~ 88 (253)
T PF10647_consen 29 PAVSPDGSRVAAVSEGDGGRSLYVGPA--GGPVRPVLT-------GG------SLTRPS-WDPD---GW-VWTVDDGSGG 88 (253)
T ss_pred eEECCCCCeEEEEEEcCCCCEEEEEcC--CCcceeecc-------CC------cccccc-ccCC---CC-EEEEEcCCCc
Confidence 778999987776651 11234555543 333222211 11 333333 8887 54 4444445555
Q ss_pred EEEEE-ccCCCCceEeeecC--CcceEEEEEeCCCCeEEEec---CCCcEEEEecC
Q 021291 233 ILVWD-IRNPGIPLTAMKVH--LEPVLCLSIDESCNGGISGG---ADQKIVLYNLD 282 (314)
Q Consensus 233 i~vwd-~~~~~~~~~~~~~h--~~~v~~~~~~~~~~~l~s~s---~dg~i~iw~~~ 282 (314)
.+++. ..........+... ...|+.+.++|||..++... .++.|.+=-+.
T Consensus 89 ~~~~~~~~~g~~~~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~ 144 (253)
T PF10647_consen 89 VRVVRDSASGTGEPVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVV 144 (253)
T ss_pred eEEEEecCCCcceeEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEE
Confidence 56553 23211111222211 12899999999999876555 35677776543
No 433
>smart00564 PQQ beta-propeller repeat. Beta-propeller repeat occurring in enzymes with pyrrolo-quinoline quinone (PQQ) as cofactor, in Ire1p-like Ser/Thr kinases, and in prokaryotic dehydrogenases.
Probab=88.96 E-value=1.4 Score=21.74 Aligned_cols=25 Identities=20% Similarity=0.327 Sum_probs=21.1
Q ss_pred EEEEecCCCeEEEEeCCCCeEEEEE
Q 021291 32 ILFAGTTGGELRIWDTVQHRTVSSS 56 (314)
Q Consensus 32 ~l~s~~~dg~v~iwd~~~~~~~~~~ 56 (314)
.++.++.+|.+..+|.++|+.+..+
T Consensus 8 ~v~~~~~~g~l~a~d~~~G~~~W~~ 32 (33)
T smart00564 8 TVYVGSTDGTLYALDAKTGEILWTY 32 (33)
T ss_pred EEEEEcCCCEEEEEEcccCcEEEEc
Confidence 6788899999999999999887653
No 434
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=88.56 E-value=9.2 Score=35.00 Aligned_cols=74 Identities=4% Similarity=-0.025 Sum_probs=49.2
Q ss_pred CCceeeeEEEec--CCCCCCceEEEEeecCCcEEEEEccCCCC--ceEeeecCCcceEEEEEe-----CCCC-eEEEecC
Q 021291 203 GRGMCMAVQAYL--PSKSQGFVNVLAGYEDGSILVWDIRNPGI--PLTAMKVHLEPVLCLSID-----ESCN-GGISGGA 272 (314)
Q Consensus 203 ~~~~~~~~~~~~--p~~~~g~~~l~~g~~dg~i~vwd~~~~~~--~~~~~~~h~~~v~~~~~~-----~~~~-~l~s~s~ 272 (314)
....++.++ ++ .. .+ +||+++....|.||-...... ....-..|...|.+|+|- +.|. +|++++-
T Consensus 162 v~~SaWGLd-Ih~~~~---~r-lIAVSsNs~~VTVFaf~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI 236 (717)
T PF08728_consen 162 VGASAWGLD-IHDYKK---SR-LIAVSSNSQEVTVFAFALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDI 236 (717)
T ss_pred cCCceeEEE-EEecCc---ce-EEEEecCCceEEEEEEeccccccccccccccccCCCeeEeecCCCCCccceEEEEEec
Confidence 455788887 76 32 23 888888888888886653111 111111356688999992 3343 7888999
Q ss_pred CCcEEEEec
Q 021291 273 DQKIVLYNL 281 (314)
Q Consensus 273 dg~i~iw~~ 281 (314)
.|.+.+|++
T Consensus 237 ~G~v~~~~I 245 (717)
T PF08728_consen 237 SGEVWTFKI 245 (717)
T ss_pred cCcEEEEEE
Confidence 999999888
No 435
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=88.15 E-value=0.71 Score=42.35 Aligned_cols=71 Identities=23% Similarity=0.262 Sum_probs=46.6
Q ss_pred CceeEEEEcc---CCCEEEEecCCCeEEEEeCCCCeEEEEEeccCCcccEEEEE-----------EcccCCCCeEEEeec
Q 021291 19 ASVTDVCFHQ---TKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVA-----------TGPSIGLNKVISQGR 84 (314)
Q Consensus 19 ~~v~~~~~~~---~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~-----------~~~~~~~~~l~s~~~ 84 (314)
..+.-+.|.| +..++..+-.+++|++.++.+... ..+++|. .++..++ .+| ||+.|++++.
T Consensus 181 s~~~~V~wcp~~~~~~~ic~~~~~~~i~lL~~~ra~~-~l~rsHs--~~~~d~a~~~~g~~~l~~lSp--DGtv~a~a~~ 255 (1283)
T KOG1916|consen 181 SDPQLVSWCPIAVNKVYICYGLKGGEIRLLNINRALR-SLFRSHS--QRVTDMAFFAEGVLKLASLSP--DGTVFAWAIS 255 (1283)
T ss_pred CCcceeeecccccccceeeeccCCCceeEeeechHHH-HHHHhcC--CCcccHHHHhhchhhheeeCC--CCcEEEEeec
Confidence 3444455554 667788888899999888765322 3344454 2244443 567 8888888888
Q ss_pred CCeEEEEeCC
Q 021291 85 DGTVKCWDIE 94 (314)
Q Consensus 85 dg~v~iwd~~ 94 (314)
||.++.|.+.
T Consensus 256 dG~v~f~Qiy 265 (1283)
T KOG1916|consen 256 DGSVGFYQIY 265 (1283)
T ss_pred CCccceeeee
Confidence 8888888753
No 436
>PF01011 PQQ: PQQ enzyme repeat family.; InterPro: IPR002372 Pyrrolo-quinoline quinone (PQQ) is a redox coenzyme, which serves as a cofactor for a number of enzymes (quinoproteins) and particularly for some bacterial dehydrogenases [, ]. A number of bacterial quinoproteins belong to this family. Enzymes in this group have repeats of a beta propeller.; PDB: 1H4I_C 1H4J_E 1W6S_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A 1G72_A ....
Probab=87.96 E-value=2.5 Score=21.92 Aligned_cols=28 Identities=18% Similarity=0.182 Sum_probs=23.7
Q ss_pred EEEEecCCCeEEEEeCCCCeEEEEEecc
Q 021291 32 ILFAGTTGGELRIWDTVQHRTVSSSWVH 59 (314)
Q Consensus 32 ~l~s~~~dg~v~iwd~~~~~~~~~~~~~ 59 (314)
.++.++.||.|.-.|.++|+.+..++..
T Consensus 2 ~v~~~~~~g~l~AlD~~TG~~~W~~~~~ 29 (38)
T PF01011_consen 2 RVYVGTPDGYLYALDAKTGKVLWKFQTG 29 (38)
T ss_dssp EEEEETTTSEEEEEETTTTSEEEEEESS
T ss_pred EEEEeCCCCEEEEEECCCCCEEEeeeCC
Confidence 4566799999999999999999888654
No 437
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=87.66 E-value=22 Score=32.53 Aligned_cols=51 Identities=14% Similarity=0.274 Sum_probs=37.9
Q ss_pred CeEEEEeCCCCeEEEEEeccCCcccEEEEEEcccCCCCeEEEeecCCeEEEEeCCCC
Q 021291 40 GELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENG 96 (314)
Q Consensus 40 g~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~ 96 (314)
-.|+||++. |+.+..+.-... .+..+.|+. + ..|+....||++++|++-..
T Consensus 64 ~~I~If~~s-G~lL~~~~w~~~--~lI~mgWs~--~-eeLI~v~k~g~v~Vy~~~ge 114 (829)
T KOG2280|consen 64 PYIRIFNIS-GQLLGRILWKHG--ELIGMGWSD--D-EELICVQKDGTVHVYGLLGE 114 (829)
T ss_pred eeEEEEecc-ccchHHHHhcCC--CeeeecccC--C-ceEEEEeccceEEEeecchh
Confidence 458888854 666655443332 388999998 6 78888999999999998754
No 438
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=87.04 E-value=24 Score=32.31 Aligned_cols=53 Identities=17% Similarity=0.098 Sum_probs=34.3
Q ss_pred ceeeeEEEecCCCCCCceEEEEeecCCcEEEEEccCCCCceEeee--cCCcceEEEEEeCCC
Q 021291 205 GMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMK--VHLEPVLCLSIDESC 264 (314)
Q Consensus 205 ~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~~~~~--~h~~~v~~~~~~~~~ 264 (314)
+.+..+. .+|+ .+ +|+--...|.|.+-+.+. .+.+..+. .| .+-..++|..+.
T Consensus 217 ~~~~ki~-VS~n---~~-~laLyt~~G~i~~vs~D~-~~~lce~~~~~~-~~p~qm~Wcgnd 271 (829)
T KOG2280|consen 217 SSVVKIS-VSPN---RR-FLALYTETGKIWVVSIDL-SQILCEFNCTDH-DPPKQMAWCGND 271 (829)
T ss_pred ceEEEEE-EcCC---cc-eEEEEecCCcEEEEecch-hhhhhccCCCCC-CchHhceeecCC
Confidence 3455555 7776 33 888888899999988876 66665555 22 233367775554
No 439
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=87.00 E-value=15 Score=29.78 Aligned_cols=79 Identities=19% Similarity=0.294 Sum_probs=48.9
Q ss_pred ecCcCeEEEEecCCCceeeeecccccCCCCCcCCCCCceeeeEEEecCCC---CCCceEEEEeecCCcEEEEEccCCCCc
Q 021291 168 GEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSK---SQGFVNVLAGYEDGSILVWDIRNPGIP 244 (314)
Q Consensus 168 g~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~---~~g~~~l~~g~~dg~i~vwd~~~~~~~ 244 (314)
|.--|.|-+||+. ++.++++... +.-. ..+.++ ..|.+ ..|. +|+--..||+|..||..+ ++.
T Consensus 218 G~G~G~VdvFd~~-G~l~~r~as~------g~LN----aPWG~a-~APa~FG~~sg~-lLVGNFGDG~InaFD~~s-G~~ 283 (336)
T TIGR03118 218 GAGLGYVNVFTLN-GQLLRRVASS------GRLN----APWGLA-IAPESFGSLSGA-LLVGNFGDGTINAYDPQS-GAQ 283 (336)
T ss_pred CCCcceEEEEcCC-CcEEEEeccC------Cccc----CCceee-eChhhhCCCCCC-eEEeecCCceeEEecCCC-Cce
Confidence 4445899999975 6777777531 2211 233333 33321 1144 677777899999999987 776
Q ss_pred eEeeecCCc------ceEEEEE
Q 021291 245 LTAMKVHLE------PVLCLSI 260 (314)
Q Consensus 245 ~~~~~~h~~------~v~~~~~ 260 (314)
+..+....+ .++.|.|
T Consensus 284 ~g~L~~~~G~pi~i~GLWgL~f 305 (336)
T TIGR03118 284 LGQLLDPDNHPVKVDGLWSLTF 305 (336)
T ss_pred eeeecCCCCCeEEecCeEEeee
Confidence 666664332 4677888
No 440
>PHA03098 kelch-like protein; Provisional
Probab=86.87 E-value=22 Score=31.72 Aligned_cols=66 Identities=12% Similarity=0.120 Sum_probs=33.4
Q ss_pred CCCEEEEecCC-----CeEEEEeCCCCeEEEEEeccCCcccEEEEEEcccCCCCeEEEeecC------CeEEEEeCCCCC
Q 021291 29 TKPILFAGTTG-----GELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRD------GTVKCWDIENGG 97 (314)
Q Consensus 29 ~~~~l~s~~~d-----g~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d------g~v~iwd~~~~~ 97 (314)
++.+++.||.+ ..+..||..+.+....-.... +..-.+++. - ++...+.|+.+ ..+..||+.+.+
T Consensus 342 ~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~lp~-~r~~~~~~~-~--~~~iYv~GG~~~~~~~~~~v~~yd~~t~~ 417 (534)
T PHA03098 342 NNRIYVIGGIYNSISLNTVESWKPGESKWREEPPLIF-PRYNPCVVN-V--NNLIYVIGGISKNDELLKTVECFSLNTNK 417 (534)
T ss_pred CCEEEEEeCCCCCEecceEEEEcCCCCceeeCCCcCc-CCccceEEE-E--CCEEEEECCcCCCCcccceEEEEeCCCCe
Confidence 56666777765 346778877654332111111 000112222 2 44666666632 357788887664
Q ss_pred C
Q 021291 98 L 98 (314)
Q Consensus 98 ~ 98 (314)
.
T Consensus 418 W 418 (534)
T PHA03098 418 W 418 (534)
T ss_pred e
Confidence 4
No 441
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=86.36 E-value=18 Score=31.65 Aligned_cols=78 Identities=12% Similarity=0.036 Sum_probs=45.7
Q ss_pred ceeEEEEccCCCEEEEecCCCeEEEEe---------CCCCeEEEEEe---------ccCCcccEEEEEEcccC-CCCeEE
Q 021291 20 SVTDVCFHQTKPILFAGTTGGELRIWD---------TVQHRTVSSSW---------VHSAAHGIVSVATGPSI-GLNKVI 80 (314)
Q Consensus 20 ~v~~~~~~~~~~~l~s~~~dg~v~iwd---------~~~~~~~~~~~---------~~~~~~~v~~~~~~~~~-~~~~l~ 80 (314)
.|..+..++.|..++-.|.+|.+.++= +++|+..-..+ .....-.+..++|+|.. ....|.
T Consensus 105 eV~~vl~s~~GS~VaL~G~~Gi~vMeLp~rwG~~s~~eDgk~~v~CRt~~i~~~~ftss~~ltl~Qa~WHP~S~~D~hL~ 184 (741)
T KOG4460|consen 105 EVYQVLLSPTGSHVALIGIKGLMVMELPKRWGKNSEFEDGKSTVNCRTTPVAERFFTSSTSLTLKQAAWHPSSILDPHLV 184 (741)
T ss_pred EEEEEEecCCCceEEEecCCeeEEEEchhhcCccceecCCCceEEEEeecccceeeccCCceeeeeccccCCccCCceEE
Confidence 567788899999999999999665543 12232211110 01111235667787732 014566
Q ss_pred EeecCCeEEEEeCCCCC
Q 021291 81 SQGRDGTVKCWDIENGG 97 (314)
Q Consensus 81 s~~~dg~v~iwd~~~~~ 97 (314)
.-+.|..|++||.....
T Consensus 185 iL~sdnviRiy~lS~~t 201 (741)
T KOG4460|consen 185 LLTSDNVIRIYSLSEPT 201 (741)
T ss_pred EEecCcEEEEEecCCcc
Confidence 66667788888876543
No 442
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=86.20 E-value=22 Score=30.93 Aligned_cols=62 Identities=11% Similarity=0.090 Sum_probs=40.4
Q ss_pred eEEecCCCCceeEEEEccCCCEEEEecCCCeEEEEeCCCCeE--EEEEe---ccCCcccEEEEEEcc
Q 021291 11 VAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRT--VSSSW---VHSAAHGIVSVATGP 72 (314)
Q Consensus 11 ~~~l~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~--~~~~~---~~~~~~~v~~~~~~~ 72 (314)
+.++-..-..-+.|+|.|||++|++--..|.|++++..++.. +..+. ..........|+++|
T Consensus 22 ~~~va~GL~~Pw~maflPDG~llVtER~~G~I~~v~~~~~~~~~~~~l~~v~~~~ge~GLlglal~P 88 (454)
T TIGR03606 22 KKVLLSGLNKPWALLWGPDNQLWVTERATGKILRVNPETGEVKVVFTLPEIVNDAQHNGLLGLALHP 88 (454)
T ss_pred EEEEECCCCCceEEEEcCCCeEEEEEecCCEEEEEeCCCCceeeeecCCceeccCCCCceeeEEECC
Confidence 334444556778999999998877765579999998655432 21111 111235689999998
No 443
>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3.1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.
Probab=86.11 E-value=20 Score=30.30 Aligned_cols=104 Identities=15% Similarity=0.162 Sum_probs=58.2
Q ss_pred eEEEeecCcCeEEEEecC---CC----ceeeeecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEeecCCcEEE
Q 021291 163 YMAVAGEQLSEVEIWDLN---TA----ERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILV 235 (314)
Q Consensus 163 ~~~~~g~~d~~i~vwd~~---~~----~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~v 235 (314)
+.+.....+|.+..|-+. .+ +.++.|.. .+-+-.+. .... .+ .|+.|-++.-|.-
T Consensus 172 ~ya~v~~k~G~~~Qy~L~~~~~g~v~~~lVR~f~~-------------~sQ~EGCV-VDDe--~g--~LYvgEE~~GIW~ 233 (381)
T PF02333_consen 172 LYAFVNGKDGRVEQYELTDDGDGKVSATLVREFKV-------------GSQPEGCV-VDDE--TG--RLYVGEEDVGIWR 233 (381)
T ss_dssp EEEEEEETTSEEEEEEEEE-TTSSEEEEEEEEEE--------------SS-EEEEE-EETT--TT--EEEEEETTTEEEE
T ss_pred EEEEEecCCceEEEEEEEeCCCCcEeeEEEEEecC-------------CCcceEEE-Eecc--cC--CEEEecCccEEEE
Confidence 444455567888877664 33 24555552 11233332 4433 13 7889999988888
Q ss_pred EEccCCC----CceEeeec--CCcceEEEEE--eC--CCCeEEEecCCCcEEEEecCCC
Q 021291 236 WDIRNPG----IPLTAMKV--HLEPVLCLSI--DE--SCNGGISGGADQKIVLYNLDHS 284 (314)
Q Consensus 236 wd~~~~~----~~~~~~~~--h~~~v~~~~~--~~--~~~~l~s~s~dg~i~iw~~~~~ 284 (314)
|+.+... ..+....+ ....|..|++ .. .|.+|+|.-.++...||+.+..
T Consensus 234 y~Aep~~~~~~~~v~~~~g~~l~aDvEGlaly~~~~g~gYLivSsQG~~sf~Vy~r~~~ 292 (381)
T PF02333_consen 234 YDAEPEGGNDRTLVASADGDGLVADVEGLALYYGSDGKGYLIVSSQGDNSFAVYDREGP 292 (381)
T ss_dssp EESSCCC-S--EEEEEBSSSSB-S-EEEEEEEE-CCC-EEEEEEEGGGTEEEEEESSTT
T ss_pred EecCCCCCCcceeeecccccccccCccceEEEecCCCCeEEEEEcCCCCeEEEEecCCC
Confidence 8876311 22222222 3457888887 23 3445566666889999998764
No 444
>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=86.09 E-value=1.7 Score=36.72 Aligned_cols=164 Identities=12% Similarity=0.127 Sum_probs=83.6
Q ss_pred CceEEecCCCCceeEEEEccCCCEEEEecCCCeEEEEeCCCCeEE-EEEecc-CCc--ccEE-EEEEcccCCCCeEEEee
Q 021291 9 DPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTV-SSSWVH-SAA--HGIV-SVATGPSIGLNKVISQG 83 (314)
Q Consensus 9 ~~~~~l~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~-~~~~~~-~~~--~~v~-~~~~~~~~~~~~l~s~~ 83 (314)
+.++.+..-...|..+-..|||+.|..-+. .++.|+++.+.... +++-.. .+. ..|+ ++..-. .+..++.++
T Consensus 211 e~i~~L~~~~~~v~qllL~Pdg~~LYv~~g-~~~~v~~L~~r~l~~rkl~~dspg~~~~~Vte~l~lL~--Gg~SLLv~~ 287 (733)
T COG4590 211 EIIRLLSVPFSDVSQLLLTPDGKTLYVRTG-SELVVALLDKRSLQIRKLVDDSPGDSRHQVTEQLYLLS--GGFSLLVVH 287 (733)
T ss_pred hhhhhcCCCccchHhhEECCCCCEEEEecC-CeEEEEeecccccchhhhhhcCCCchHHHHHHHHHHHh--CceeEEEEc
Confidence 334445556677888999999998876555 57899988754321 111111 110 1122 222223 567788889
Q ss_pred cCCeEEEE-eCCCCCCCCCCeeeeecceeeEEEeeeeeccccccccCCCCcceeeccCCc------------eeeecCCC
Q 021291 84 RDGTVKCW-DIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGE------------TVDTDSLC 150 (314)
Q Consensus 84 ~dg~v~iw-d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~ 150 (314)
.||-|.-| |++...... +. +...++....+.............+.+.... ........
T Consensus 288 ~dG~vsQWFdvr~~~~p~---l~------h~R~f~l~pa~~~~l~pe~~rkgF~~l~~~G~L~~f~st~~~~lL~~~~~~ 358 (733)
T COG4590 288 EDGLVSQWFDVRRDGQPH---LN------HIRNFKLAPAEVQFLLPETNRKGFYSLYRNGTLQSFYSTSEKLLLFERAYQ 358 (733)
T ss_pred CCCceeeeeeeecCCCCc---ce------eeeccccCcccceeeccccccceEEEEcCCCceeeeecccCcceehhhhhc
Confidence 99998877 554432211 11 1111222222222222222222222222211 11111111
Q ss_pred CCC-ceeccCCCceEEEeecCcCeEEEEecCCCceeee
Q 021291 151 DSK-DDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTR 187 (314)
Q Consensus 151 ~~~-~~~~~~~~~~~~~~g~~d~~i~vwd~~~~~~~~~ 187 (314)
... +++||.+.+++. - ..|.++++.+.+..+..+
T Consensus 359 ~~~~~~~Sp~~~~Ll~--e-~~gki~~~~l~Nr~Peis 393 (733)
T COG4590 359 APQLVAMSPNQAYLLS--E-DQGKIRLAQLENRNPEIS 393 (733)
T ss_pred CcceeeeCcccchhee--e-cCCceEEEEecCCCCCcc
Confidence 112 889999988763 2 357899998887654433
No 445
>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....
Probab=85.92 E-value=3.4 Score=21.39 Aligned_cols=32 Identities=9% Similarity=0.230 Sum_probs=20.1
Q ss_pred ecCCCCceeEEEEccCCCEEEEe-cCC--CeEEEE
Q 021291 14 LRGHRASVTDVCFHQTKPILFAG-TTG--GELRIW 45 (314)
Q Consensus 14 l~~h~~~v~~~~~~~~~~~l~s~-~~d--g~v~iw 45 (314)
+......-....|+|||+.|+-+ ..+ |.-.||
T Consensus 4 ~t~~~~~~~~p~~SpDGk~i~f~s~~~~~g~~diy 38 (39)
T PF07676_consen 4 LTNSPGDDGSPAWSPDGKYIYFTSNRNDRGSFDIY 38 (39)
T ss_dssp ES-SSSSEEEEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred cccCCccccCEEEecCCCEEEEEecCCCCCCcCEE
Confidence 33455667889999999877654 444 555555
No 446
>KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=85.91 E-value=36 Score=33.14 Aligned_cols=31 Identities=23% Similarity=0.462 Sum_probs=26.3
Q ss_pred CceeEEEEccCCCEEEEecCCCeEEEEeCCC
Q 021291 19 ASVTDVCFHQTKPILFAGTTGGELRIWDTVQ 49 (314)
Q Consensus 19 ~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~ 49 (314)
.....++|+|...++|.++.+|.|+++-...
T Consensus 36 ~~~~~~afD~~q~llai~t~tg~i~~yg~~~ 66 (993)
T KOG1983|consen 36 STPSALAFDPTQGLLAIGTRTGAIKIYGQPG 66 (993)
T ss_pred CCCcceeeccccceEEEEEecccEEEecccc
Confidence 3556789999989999999999999997543
No 447
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=85.81 E-value=27 Score=31.59 Aligned_cols=67 Identities=15% Similarity=0.183 Sum_probs=40.5
Q ss_pred CCCEEEEecCC------CeEEEEeCCCCeEEEEEeccCCcccEEEEEEcccCCCCeEEEeecCC-----eEEEEeCCCCC
Q 021291 29 TKPILFAGTTG------GELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDG-----TVKCWDIENGG 97 (314)
Q Consensus 29 ~~~~l~s~~~d------g~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg-----~v~iwd~~~~~ 97 (314)
++.+.++||.| .++..||..+.+....-....... =..++.. +|...+.|+.|| +|-.||..+.+
T Consensus 332 ~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~~a~M~~~R~-~~~v~~l---~g~iYavGG~dg~~~l~svE~YDp~~~~ 407 (571)
T KOG4441|consen 332 NGKLYVVGGYDSGSDRLSSVERYDPRTNQWTPVAPMNTKRS-DFGVAVL---DGKLYAVGGFDGEKSLNSVECYDPVTNK 407 (571)
T ss_pred CCEEEEEccccCCCcccceEEEecCCCCceeccCCccCccc-cceeEEE---CCEEEEEeccccccccccEEEecCCCCc
Confidence 45677889998 357788887766433211111101 1122222 567888898886 48889988876
Q ss_pred CC
Q 021291 98 LS 99 (314)
Q Consensus 98 ~~ 99 (314)
..
T Consensus 408 W~ 409 (571)
T KOG4441|consen 408 WT 409 (571)
T ss_pred cc
Confidence 53
No 448
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=85.71 E-value=19 Score=29.85 Aligned_cols=109 Identities=11% Similarity=0.084 Sum_probs=51.5
Q ss_pred ceeccCCCceEEEeecCcCeEEEEecCCCceeeeecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEeec-C--
Q 021291 154 DDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYE-D-- 230 (314)
Q Consensus 154 ~~~~~~~~~~~~~~g~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~-d-- 230 (314)
++|.|+|. +++ + ...|.|++++ ..+.....+.... .-..........++ ++|+-.... +|.+... .
T Consensus 7 ~a~~pdG~-l~v-~-e~~G~i~~~~-~~g~~~~~v~~~~-----~v~~~~~~gllgia-~~p~f~~n~-~lYv~~t~~~~ 75 (331)
T PF07995_consen 7 MAFLPDGR-LLV-A-ERSGRIWVVD-KDGSLKTPVADLP-----EVFADGERGLLGIA-FHPDFASNG-YLYVYYTNADE 75 (331)
T ss_dssp EEEETTSC-EEE-E-ETTTEEEEEE-TTTEECEEEEE-T-----TTBTSTTBSEEEEE-E-TTCCCC--EEEEEEEEE-T
T ss_pred EEEeCCCc-EEE-E-eCCceEEEEe-CCCcCcceecccc-----cccccccCCcccce-eccccCCCC-EEEEEEEcccC
Confidence 67899985 443 3 3479999999 4444312221100 01111234567787 999633333 3333222 1
Q ss_pred ------CcEEEEEccCCCC-------ceEeeec---CCcceEEEEEeCCCCeEEEecCC
Q 021291 231 ------GSILVWDIRNPGI-------PLTAMKV---HLEPVLCLSIDESCNGGISGGAD 273 (314)
Q Consensus 231 ------g~i~vwd~~~~~~-------~~~~~~~---h~~~v~~~~~~~~~~~l~s~s~d 273 (314)
..|.-|....... .+..+.. ....-..|.|.|+|.+.++.+..
T Consensus 76 ~~~~~~~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG~LYvs~G~~ 134 (331)
T PF07995_consen 76 DGGDNDNRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDGKLYVSVGDG 134 (331)
T ss_dssp SSSSEEEEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTSEEEEEEB-T
T ss_pred CCCCcceeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCCcEEEEeCCC
Confidence 2344444433111 1112222 23345679999999877766553
No 449
>PF10395 Utp8: Utp8 family; InterPro: IPR018843 Utp8 is an essential component of the nuclear tRNA export machinery in Saccharomyces cerevisiae (Baker's yeast). It is a tRNA binding protein that acts at a step between tRNA maturation /aminoacylation, and translocation of the tRNA across the nuclear pore complex [].
Probab=83.98 E-value=34 Score=31.24 Aligned_cols=178 Identities=11% Similarity=0.103 Sum_probs=0.0
Q ss_pred CCceeEEEEccCCCEEEEecCCCeEEEEeC--CCCeEEEEEeccCCcccEEEEEEcccCC----CCeEEEeec-CCeEEE
Q 021291 18 RASVTDVCFHQTKPILFAGTTGGELRIWDT--VQHRTVSSSWVHSAAHGIVSVATGPSIG----LNKVISQGR-DGTVKC 90 (314)
Q Consensus 18 ~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~--~~~~~~~~~~~~~~~~~v~~~~~~~~~~----~~~l~s~~~-dg~v~i 90 (314)
.+.|..+.|.++++.+++.-.+|.|.+||. ...+....+.......-+++ .|.+.-. ..++++.+. ++.=-.
T Consensus 129 ~~kvv~Ik~~~~~~~I~vvl~nG~i~~~d~~~~~l~~~~~l~~~~~~~v~ys-~fv~~~~~~~~~~~ll~v~~~~~~k~~ 207 (670)
T PF10395_consen 129 DDKVVGIKFSSDGKIIYVVLENGSIQIYDFSENSLEKVPQLKLKSSINVSYS-KFVNDFELENGKDLLLTVSQLSNSKLS 207 (670)
T ss_pred ccceEEEEEecCCCEEEEEEcCCcEEEEeccccccccccccccccccceehh-hhhcccccccCCceEEEEEEcCCCcEE
Q ss_pred EeCCCCCCCCCCeeeeecceeeEEEeeeeeccccccccCCCCcceeeccCCceeeecCCCCCCceeccCCCceEEEeecC
Q 021291 91 WDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQ 170 (314)
Q Consensus 91 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 170 (314)
|.+-.-.....+.+++...........-.. |+.....++.. .
T Consensus 208 ykL~~l~~~~~~~~El~s~~~e~~~~~~s~-----------------------------------f~Y~~G~LY~l---~ 249 (670)
T PF10395_consen 208 YKLISLSNESSSIFELSSTILENFGLEDSK-----------------------------------FCYQFGKLYQL---S 249 (670)
T ss_pred EEEEEeccCCcceEEeehheeccCCcccce-----------------------------------EEEeCCEEEEE---e
Q ss_pred cCeEEEEecCCCceeeeecccccCCCCCcCCCCC-ceeeeEEEecCCCCCCceEEEEeecCCcEEEEEccCCCCceEeee
Q 021291 171 LSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGR-GMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMK 249 (314)
Q Consensus 171 d~~i~vwd~~~~~~~~~~~~~~~~~~~~h~~~~~-~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~~~~~ 249 (314)
+++|.+|++...+...++.. .+--... ....++.+-+|+ .++.+..+ .|++.|+.- ...+.++.
T Consensus 250 ~~~i~~ysip~f~~~~tI~l-------~~ii~~~~~~~vSl~~~s~n------RvLLs~~n-kIyLld~~~-~siLse~~ 314 (670)
T PF10395_consen 250 KKTISSYSIPNFQIQKTISL-------PSIIDKESDDLVSLKPPSPN------RVLLSVNN-KIYLLDLKF-ESILSEFE 314 (670)
T ss_pred CCEEEEEEcCCceEEEEEEe-------chhhccccccceEeecCCCC------eEEEEcCC-EEEEEeehh-hhhhhhhh
No 450
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=83.80 E-value=17 Score=27.72 Aligned_cols=56 Identities=11% Similarity=0.216 Sum_probs=39.1
Q ss_pred CEEEEecCCCeEEEEeCCC--CeEEEEEeccCCcccEEEEEEcccCCCCeEEEeecCC------eEEEE
Q 021291 31 PILFAGTTGGELRIWDTVQ--HRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDG------TVKCW 91 (314)
Q Consensus 31 ~~l~s~~~dg~v~iwd~~~--~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg------~v~iw 91 (314)
..|+.+.....|.+|++.+ .+.+.++..- +.|..+.++. .|++|+|--.+. .+|+|
T Consensus 29 d~Lfva~~g~~Vev~~l~~~~~~~~~~F~Tv---~~V~~l~y~~--~GDYlvTlE~k~~~~~~~fvR~Y 92 (215)
T PF14761_consen 29 DALFVAASGCKVEVYDLEQEECPLLCTFSTV---GRVLQLVYSE--AGDYLVTLEEKNKRSPVDFVRAY 92 (215)
T ss_pred ceEEEEcCCCEEEEEEcccCCCceeEEEcch---hheeEEEecc--ccceEEEEEeecCCccceEEEEE
Confidence 4555546667899999883 3455555543 5599999999 899999865432 56665
No 451
>PHA02790 Kelch-like protein; Provisional
Probab=82.93 E-value=33 Score=30.27 Aligned_cols=66 Identities=11% Similarity=0.035 Sum_probs=33.3
Q ss_pred CCCEEEEecCCC--eEEEEeCCCCeEEEEEeccCCcccEEEEEEcccCCCCeEEEeecCC---eEEEEeCCCCCC
Q 021291 29 TKPILFAGTTGG--ELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDG---TVKCWDIENGGL 98 (314)
Q Consensus 29 ~~~~l~s~~~dg--~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg---~v~iwd~~~~~~ 98 (314)
++.+.+.||.++ .+..||..+++....-......... +++. - ++...+.|+.++ .+..||.++.+.
T Consensus 318 ~~~iYviGG~~~~~sve~ydp~~n~W~~~~~l~~~r~~~-~~~~-~--~g~IYviGG~~~~~~~ve~ydp~~~~W 388 (480)
T PHA02790 318 NNKLYVVGGLPNPTSVERWFHGDAAWVNMPSLLKPRCNP-AVAS-I--NNVIYVIGGHSETDTTTEYLLPNHDQW 388 (480)
T ss_pred CCEEEEECCcCCCCceEEEECCCCeEEECCCCCCCCccc-EEEE-E--CCEEEEecCcCCCCccEEEEeCCCCEE
Confidence 566667777543 5777887655433211111110111 2222 2 456667777543 466777776543
No 452
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=82.12 E-value=4.6 Score=34.91 Aligned_cols=59 Identities=12% Similarity=0.222 Sum_probs=44.3
Q ss_pred CEEEEecCCCeEEEEeCCCCeEEEEEeccCCcccEEEEEEcccCCCCeEEEeecCCeEEEEeCC
Q 021291 31 PILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIE 94 (314)
Q Consensus 31 ~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd~~ 94 (314)
-++|.|+..|.|++||.-.-+....+.+-. ..|..+..+. +|+++++.+.. .+.+-|+.
T Consensus 574 GyIa~as~kGDirLyDRig~rAKtalP~lG--~aIk~idvta--~Gk~ilaTCk~-yllL~d~~ 632 (776)
T COG5167 574 GYIAAASRKGDIRLYDRIGKRAKTALPGLG--DAIKHIDVTA--NGKHILATCKN-YLLLTDVP 632 (776)
T ss_pred ceEEEecCCCceeeehhhcchhhhcCcccc--cceeeeEeec--CCcEEEEeecc-eEEEEecc
Confidence 489999999999999955434444455555 3499999999 88888877754 77788875
No 453
>PF08801 Nucleoporin_N: Nup133 N terminal like; InterPro: IPR014908 Nucleoporins are the main components of the nuclear pore complex (NPC) in eukaryotic cells, and mediate bidirectional nucleocytoplasmic transport, especially of mRNA and proteins. RNA undergoing nuclear export first encounters the basket of the nuclear pore and many nucleoporins are accessible on the basket side of the pore [, ]. This entry represents the N-terminal of Nucleoprotein which forms a seven-bladed beta propeller structure []. ; PDB: 1XKS_A.
Probab=81.88 E-value=33 Score=29.59 Aligned_cols=31 Identities=16% Similarity=0.184 Sum_probs=25.0
Q ss_pred cceEEEEEeCCCCeEEEecCCCcEEEEecCC
Q 021291 253 EPVLCLSIDESCNGGISGGADQKIVLYNLDH 283 (314)
Q Consensus 253 ~~v~~~~~~~~~~~l~s~s~dg~i~iw~~~~ 283 (314)
..|.+++.++..+.|++...+|.|.+|++..
T Consensus 190 ~~I~~v~~d~~r~~ly~l~~~~~Iq~w~l~~ 220 (422)
T PF08801_consen 190 PKIVQVAVDPSRRLLYTLTSDGSIQVWDLGP 220 (422)
T ss_dssp --EEEEEEETTTTEEEEEESSE-EEEEEE-S
T ss_pred hceeeEEecCCcCEEEEEeCCCcEEEEEEeC
Confidence 3488999988889999999999999999975
No 454
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=81.20 E-value=32 Score=29.02 Aligned_cols=52 Identities=17% Similarity=0.128 Sum_probs=32.5
Q ss_pred cceEEEEEeCCCCeEEEecCC-------------------CcEEEEecCCCeeeEe------eeeeeecCCCceece
Q 021291 253 EPVLCLSIDESCNGGISGGAD-------------------QKIVLYNLDHSTYVLF------GIGFVCDQEGNKFGT 304 (314)
Q Consensus 253 ~~v~~~~~~~~~~~l~s~s~d-------------------g~i~iw~~~~~~~~~~------~~~~~~~~~~~~~~~ 304 (314)
.....++|.|+|.+.++-+.. |.|.-++.+.++.... ..+++++++|..+.+
T Consensus 124 ~~~~~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r~~pdg~~~e~~a~G~rnp~Gl~~d~~G~l~~t 200 (367)
T TIGR02604 124 HSLNSLAWGPDGWLYFNHGNTLASKVTRPGTSDESRQGLGGGLFRYNPDGGKLRVVAHGFQNPYGHSVDSWGDVFFC 200 (367)
T ss_pred ccccCceECCCCCEEEecccCCCceeccCCCccCcccccCceEEEEecCCCeEEEEecCcCCCccceECCCCCEEEE
Confidence 447789999999876655521 4455556655433222 356778888877664
No 455
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=81.12 E-value=8.5 Score=32.89 Aligned_cols=80 Identities=8% Similarity=0.155 Sum_probs=52.0
Q ss_pred eEEecCCCCceeEEEEccCCCEEEEecCCCeEEEEeCCCCeEEE--EEeccCCcccEEEEEEcccCCCCeEEEeecCCeE
Q 021291 11 VAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVS--SSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTV 88 (314)
Q Consensus 11 ~~~l~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~--~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~v 88 (314)
+..-....++|.++.||+|.+.||.--.|.+|.+++....+... ..+.......|....|+. + .-++-....| +
T Consensus 59 iSfdm~d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~~~~~ck~k~~~IlGF~W~~--s-~e~A~i~~~G-~ 134 (657)
T KOG2377|consen 59 ISFDMDDKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLEYTQECKTKNANILGFCWTS--S-TEIAFITDQG-I 134 (657)
T ss_pred ceeeecCCCceeEEEeccCcceEEEEecCceEEEEecCCCchhhHHHHHhccCcceeEEEEEec--C-eeEEEEecCC-e
Confidence 33333456799999999999999999999999999974332211 111112224489999987 4 5555555443 5
Q ss_pred EEEeCC
Q 021291 89 KCWDIE 94 (314)
Q Consensus 89 ~iwd~~ 94 (314)
-+|.+.
T Consensus 135 e~y~v~ 140 (657)
T KOG2377|consen 135 EFYQVL 140 (657)
T ss_pred EEEEEc
Confidence 555543
No 456
>KOG3611 consensus Semaphorins [Signal transduction mechanisms]
Probab=80.73 E-value=25 Score=32.66 Aligned_cols=80 Identities=20% Similarity=0.260 Sum_probs=54.6
Q ss_pred CCceEEecCCCCceeEEEEc----cCCC--EEEEecCCCeEE-EEeCCCC-----eEEEEEeccCCcccEEEEEEcccCC
Q 021291 8 PDPVAVLRGHRASVTDVCFH----QTKP--ILFAGTTGGELR-IWDTVQH-----RTVSSSWVHSAAHGIVSVATGPSIG 75 (314)
Q Consensus 8 ~~~~~~l~~h~~~v~~~~~~----~~~~--~l~s~~~dg~v~-iwd~~~~-----~~~~~~~~~~~~~~v~~~~~~~~~~ 75 (314)
++|+....+ ....+.++.. .+++ .|+.|+.+|+|. +-.+.+. ..+..++......+|..|..++ .
T Consensus 398 ~~P~l~~~~-~~~~t~I~Vd~~~~~~~~ydVlflGTd~G~vlKvV~~~~~~~~~~~llEElqvf~~~~pI~~m~Ls~--~ 474 (737)
T KOG3611|consen 398 GRPLLVKTG-DYRLTQIVVDRVAGLDGNYDVLFLGTDAGTVLKVVSPGKESGKSNVLLEELQVFPDAEPIRSMQLSS--K 474 (737)
T ss_pred CCceEEecc-cceEEEEEEEEecCCCCcEEEEEEecCCCeEEEEEecCCccCccceeEEEEeecCCCCceeEEEecc--c
Confidence 357777766 6777778776 4444 577899999753 3333221 1455565555446799999999 7
Q ss_pred CCeEEEeecCCeEEE
Q 021291 76 LNKVISQGRDGTVKC 90 (314)
Q Consensus 76 ~~~l~s~~~dg~v~i 90 (314)
.+.|+.|+.+|.++|
T Consensus 475 ~~~LyVgs~~gV~qv 489 (737)
T KOG3611|consen 475 RGSLYVGSRSGVVQV 489 (737)
T ss_pred CCeEEEEccCcEEEe
Confidence 678999998886665
No 457
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=80.59 E-value=23 Score=26.99 Aligned_cols=28 Identities=14% Similarity=0.128 Sum_probs=19.5
Q ss_pred CceEEEeecCcCeEEEEecCCCceeeeec
Q 021291 161 PKYMAVAGEQLSEVEIWDLNTAERCTRLH 189 (314)
Q Consensus 161 ~~~~~~~g~~d~~i~vwd~~~~~~~~~~~ 189 (314)
+.+...+= .||.-..||.++.+++..+.
T Consensus 101 d~~y~LTw-~egvaf~~d~~t~~~lg~~~ 128 (262)
T COG3823 101 DYFYQLTW-KEGVAFKYDADTLEELGRFS 128 (262)
T ss_pred ceEEEEEe-ccceeEEEChHHhhhhcccc
Confidence 44444344 37888999999888777665
No 458
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=80.27 E-value=47 Score=30.76 Aligned_cols=70 Identities=9% Similarity=0.132 Sum_probs=46.5
Q ss_pred CCceeEEEEccCCCEEEEecCCCeEEEEeCCCCeEEEEEeccCCcccEEEEEEcccCCCCeEEEeecCCeEEEEeCC
Q 021291 18 RASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIE 94 (314)
Q Consensus 18 ~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd~~ 94 (314)
..-++++.-+|.|+-++.+..||.|++|+....+........ .+-..+.|.. .-|+++..|..+.-|.-+
T Consensus 14 ~e~~~aiqshp~~~s~v~~~~d~si~lfn~~~r~qski~~~~---~p~~nlv~tn----hgl~~~tsdrr~la~~~d 83 (1636)
T KOG3616|consen 14 DEFTTAIQSHPGGQSFVLAHQDGSIILFNFIPRRQSKICEEA---KPKENLVFTN----HGLVTATSDRRALAWKED 83 (1636)
T ss_pred cceeeeeeecCCCceEEEEecCCcEEEEeecccchhhhhhhc---CCccceeeec----cceEEEeccchhheeecc
Confidence 345778888899999999999999999997654332211111 2234555654 446667777777777543
No 459
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=80.06 E-value=8.1 Score=35.33 Aligned_cols=83 Identities=19% Similarity=0.197 Sum_probs=54.3
Q ss_pred ceEEecCCCCceeEEEEc--cCCCEEEEecCCCeEEEEeCCCCe-EEEEEeccCCcccEEEEEEcccC---CCC-eEEEe
Q 021291 10 PVAVLRGHRASVTDVCFH--QTKPILFAGTTGGELRIWDTVQHR-TVSSSWVHSAAHGIVSVATGPSI---GLN-KVISQ 82 (314)
Q Consensus 10 ~~~~l~~h~~~v~~~~~~--~~~~~l~s~~~dg~v~iwd~~~~~-~~~~~~~~~~~~~v~~~~~~~~~---~~~-~l~s~ 82 (314)
|...++ -...++.++++ ...++||+++....|.||-..... ....-..+.....|-+|+|.+.. +|. .++++
T Consensus 156 P~f~~~-v~~SaWGLdIh~~~~~rlIAVSsNs~~VTVFaf~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~ 234 (717)
T PF08728_consen 156 PFFHLR-VGASAWGLDIHDYKKSRLIAVSSNSQEVTVFAFALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVAT 234 (717)
T ss_pred CCeEee-cCCceeEEEEEecCcceEEEEecCCceEEEEEEeccccccccccccccccCCCeeEeecCCCCCccceEEEEE
Confidence 334444 23489999998 778899999888888888654321 11111112222349999998732 122 77889
Q ss_pred ecCCeEEEEeC
Q 021291 83 GRDGTVKCWDI 93 (314)
Q Consensus 83 ~~dg~v~iwd~ 93 (314)
+-.|.+.+|++
T Consensus 235 dI~G~v~~~~I 245 (717)
T PF08728_consen 235 DISGEVWTFKI 245 (717)
T ss_pred eccCcEEEEEE
Confidence 99999999887
No 460
>PF12341 DUF3639: Protein of unknown function (DUF3639) ; InterPro: IPR022100 This domain family is found in eukaryotes, and is approximately 30 amino acids in length. The family is found in association with PF00400 from PFAM. There are two completely conserved residues (E and R) that may be functionally important.
Probab=79.10 E-value=5.5 Score=18.96 Aligned_cols=25 Identities=20% Similarity=0.319 Sum_probs=20.6
Q ss_pred cEEEEEEcccCCCCeEEEeecCCeEEEEe
Q 021291 64 GIVSVATGPSIGLNKVISQGRDGTVKCWD 92 (314)
Q Consensus 64 ~v~~~~~~~~~~~~~l~s~~~dg~v~iwd 92 (314)
.|.+++..+ .+++.+...+.+|+|.
T Consensus 3 ~i~aia~g~----~~vavaTS~~~lRifs 27 (27)
T PF12341_consen 3 EIEAIAAGD----SWVAVATSAGYLRIFS 27 (27)
T ss_pred eEEEEEccC----CEEEEEeCCCeEEecC
Confidence 488888877 7888888889999873
No 461
>PF14779 BBS1: Ciliary BBSome complex subunit 1
Probab=78.93 E-value=27 Score=27.66 Aligned_cols=56 Identities=21% Similarity=0.204 Sum_probs=38.3
Q ss_pred eEEEEeecCCcEEEEEccCCCCceEeeecCCcceEE---EEEe-CCCCeEEEecCCCcEEEE
Q 021291 222 VNVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPVLC---LSID-ESCNGGISGGADQKIVLY 279 (314)
Q Consensus 222 ~~l~~g~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~---~~~~-~~~~~l~s~s~dg~i~iw 279 (314)
..++.|.++|.|+|.|... -..+..+.-..-++.= =.|+ -|.+ |+.++.||.|++-
T Consensus 196 scLViGTE~~~i~iLd~~a-f~il~~~~lpsvPv~i~~~G~~devdyR-I~Va~Rdg~iy~i 255 (257)
T PF14779_consen 196 SCLVIGTESGEIYILDPQA-FTILKQVQLPSVPVFISVSGQYDEVDYR-IVVACRDGKIYTI 255 (257)
T ss_pred ceEEEEecCCeEEEECchh-heeEEEEecCCCceEEEEEeeeeccceE-EEEEeCCCEEEEE
Confidence 4899999999999999886 5666666544444421 1234 5554 6667789988764
No 462
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=78.58 E-value=64 Score=30.88 Aligned_cols=75 Identities=9% Similarity=0.014 Sum_probs=48.2
Q ss_pred CCceeEEEEccC--C-C---EEEEecCCCeEEEEeC-CCCeEEEE--EeccCCcccEEEEEEcccCCCCeEEEeecCCeE
Q 021291 18 RASVTDVCFHQT--K-P---ILFAGTTGGELRIWDT-VQHRTVSS--SWVHSAAHGIVSVATGPSIGLNKVISQGRDGTV 88 (314)
Q Consensus 18 ~~~v~~~~~~~~--~-~---~l~s~~~dg~v~iwd~-~~~~~~~~--~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~v 88 (314)
...|.|+.++|- + + +++.|..+..+.+--. .+...+.. +.+..-+..|.-..+-. |..+|.++..||.+
T Consensus 530 e~evaCLDisp~~d~~~~s~~~aVG~Ws~~~~~l~~~pd~~~~~~~~l~~~~iPRSIl~~~~e~--d~~yLlvalgdG~l 607 (1096)
T KOG1897|consen 530 EYEVACLDISPLGDAPNKSRLLAVGLWSDISMILTFLPDLILITHEQLSGEIIPRSILLTTFEG--DIHYLLVALGDGAL 607 (1096)
T ss_pred cceeEEEecccCCCCCCcceEEEEEeecceEEEEEECCCcceeeeeccCCCccchheeeEEeec--cceEEEEEcCCceE
Confidence 568999999983 2 2 7888888776655433 33332222 22222234466666766 67899999999998
Q ss_pred EEEeCC
Q 021291 89 KCWDIE 94 (314)
Q Consensus 89 ~iwd~~ 94 (314)
.-|.+.
T Consensus 608 ~~fv~d 613 (1096)
T KOG1897|consen 608 LYFVLD 613 (1096)
T ss_pred EEEEEE
Confidence 776544
No 463
>PF01436 NHL: NHL repeat; InterPro: IPR001258 The NHL repeat, named after NCL-1, HT2A and Lin-41, is found largely in a large number of eukaryotic and prokaryotic proteins. For example, the repeat is found in a variety of enzymes of the copper type II, ascorbate-dependent monooxygenase family which catalyse the C terminus alpha-amidation of biological peptides []. In many it occurs in tandem arrays, for example in the ringfinger beta-box, coiled-coil (RBCC) eukaryotic growth regulators []. The 'Brain Tumor' protein (Brat) is one such growth regulator that contains a 6-bladed NHL-repeat beta-propeller [, ]. The NHL repeats are also found in serine/threonine protein kinase (STPK) in diverse range of pathogenic bacteria. These STPK are transmembrane receptors with a intracellular N-terminal kinase domain and extracellular C-terminal sensor domain. In the STPK, PknD, from Mycobacterium tuberculosis, the sensor domain forms a rigid, six-bladed b-propeller composed of NHL repeats with a flexible tether to the transmembrane domain.; GO: 0005515 protein binding; PDB: 3FVZ_A 3FW0_A 1RWL_A 1RWI_A 1Q7F_A.
Probab=78.35 E-value=5.9 Score=18.85 Aligned_cols=25 Identities=12% Similarity=0.228 Sum_probs=15.8
Q ss_pred eeEEEEccCCCEEEEecCCCeEEEE
Q 021291 21 VTDVCFHQTKPILFAGTTGGELRIW 45 (314)
Q Consensus 21 v~~~~~~~~~~~l~s~~~dg~v~iw 45 (314)
...++++++|+++++=+....|+++
T Consensus 4 P~gvav~~~g~i~VaD~~n~rV~vf 28 (28)
T PF01436_consen 4 PHGVAVDSDGNIYVADSGNHRVQVF 28 (28)
T ss_dssp EEEEEEETTSEEEEEECCCTEEEEE
T ss_pred CcEEEEeCCCCEEEEECCCCEEEEC
Confidence 3456677777666666666666553
No 464
>PF13570 PQQ_3: PQQ-like domain; PDB: 3HXJ_B 3Q54_A.
Probab=78.30 E-value=7.8 Score=20.20 Aligned_cols=21 Identities=24% Similarity=0.385 Sum_probs=15.8
Q ss_pred CCCEEEEecCCCeEEEEeCCC
Q 021291 29 TKPILFAGTTGGELRIWDTVQ 49 (314)
Q Consensus 29 ~~~~l~s~~~dg~v~iwd~~~ 49 (314)
.+..++.++.||.+..+|.++
T Consensus 20 ~~g~vyv~~~dg~l~ald~~t 40 (40)
T PF13570_consen 20 AGGRVYVGTGDGNLYALDAAT 40 (40)
T ss_dssp CTSEEEEE-TTSEEEEEETT-
T ss_pred ECCEEEEEcCCCEEEEEeCCC
Confidence 355888899999999999764
No 465
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=76.65 E-value=13 Score=28.29 Aligned_cols=50 Identities=14% Similarity=0.132 Sum_probs=37.1
Q ss_pred EEEEeecCCcEEEEEccC-CCCceEeeecCCcceEEEEEeCCCCeEEEecCC
Q 021291 223 NVLAGYEDGSILVWDIRN-PGIPLTAMKVHLEPVLCLSIDESCNGGISGGAD 273 (314)
Q Consensus 223 ~l~~g~~dg~i~vwd~~~-~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d 273 (314)
.|+.+.....|.+|++.. ..+++..+.. -+.|..+.++..|.+|+|--.+
T Consensus 30 ~Lfva~~g~~Vev~~l~~~~~~~~~~F~T-v~~V~~l~y~~~GDYlvTlE~k 80 (215)
T PF14761_consen 30 ALFVAASGCKVEVYDLEQEECPLLCTFST-VGRVLQLVYSEAGDYLVTLEEK 80 (215)
T ss_pred eEEEEcCCCEEEEEEcccCCCceeEEEcc-hhheeEEEeccccceEEEEEee
Confidence 454446677899999983 2455666664 4889999999999999987543
No 466
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=74.64 E-value=56 Score=28.28 Aligned_cols=169 Identities=11% Similarity=-0.033 Sum_probs=82.4
Q ss_pred CCceEEecCCCC------ceeEEEEccCCCEEEEecCCCeEEEEeCCC--CeEEEEEec-cCCcccEEEEEEcccCCCCe
Q 021291 8 PDPVAVLRGHRA------SVTDVCFHQTKPILFAGTTGGELRIWDTVQ--HRTVSSSWV-HSAAHGIVSVATGPSIGLNK 78 (314)
Q Consensus 8 ~~~~~~l~~h~~------~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~--~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~ 78 (314)
+...+.+..|.. .-+.+=|...++.|+ +...|.+.=|-+.. ....-.+.. .+ ++|.++.|++ |.+.
T Consensus 6 GalyhelihhPslfcnipesngvFfDDaNkqlf-avrSggatgvvvkgpndDVpiSfdm~d~--G~I~SIkFSl--Dnki 80 (657)
T KOG2377|consen 6 GALYHELIHHPSLFCNIPESNGVFFDDANKQLF-AVRSGGATGVVVKGPNDDVPISFDMDDK--GEIKSIKFSL--DNKI 80 (657)
T ss_pred cceEEEEecCchhhccCCcccceeeccCcceEE-EEecCCeeEEEEeCCCCCCCceeeecCC--CceeEEEecc--Ccce
Confidence 344556665543 223344443333333 33444566665432 222333332 33 4599999999 9899
Q ss_pred EEEeecCCeEEEEeCCCCCCCCCCeeeeecceeeEEEeeeeeccccccccCCCCcceeeccCCceeeecCCCCCC----c
Q 021291 79 VISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSK----D 154 (314)
Q Consensus 79 l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~ 154 (314)
|+.--.|.+|.+++....+.......+.+........|.-.. ..............+...+..........+.. .
T Consensus 81 lAVQR~~~~v~f~nf~~d~~~l~~~~~ck~k~~~IlGF~W~~-s~e~A~i~~~G~e~y~v~pekrslRlVks~~~nvnWy 159 (657)
T KOG2377|consen 81 LAVQRTSKTVDFCNFIPDNSQLEYTQECKTKNANILGFCWTS-STEIAFITDQGIEFYQVLPEKRSLRLVKSHNLNVNWY 159 (657)
T ss_pred EEEEecCceEEEEecCCCchhhHHHHHhccCcceeEEEEEec-CeeEEEEecCCeEEEEEchhhhhhhhhhhcccCccEE
Confidence 999999999999998433221110111111111111111111 12233334444455544443332222222322 6
Q ss_pred eeccCCCceEEEeecCcCeEEEEecCCC
Q 021291 155 DVPAEGPKYMAVAGEQLSEVEIWDLNTA 182 (314)
Q Consensus 155 ~~~~~~~~~~~~~g~~d~~i~vwd~~~~ 182 (314)
.|+++..-.+++++-..+++.=+.++++
T Consensus 160 ~yc~et~v~LL~t~~~~n~lnpf~~~~~ 187 (657)
T KOG2377|consen 160 MYCPETAVILLSTTVLENVLNPFHFRAG 187 (657)
T ss_pred EEccccceEeeeccccccccccEEEeec
Confidence 6778877666666534445544555443
No 467
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=73.56 E-value=59 Score=28.04 Aligned_cols=59 Identities=8% Similarity=0.130 Sum_probs=43.2
Q ss_pred CEEEEecCCCeEEEEeCCCCeEEEEEeccCCcccEEEEEEcccCCCCeEEEeecCCeEEEEeCC
Q 021291 31 PILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIE 94 (314)
Q Consensus 31 ~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd~~ 94 (314)
.+++.=+.||.+.+|+-+.-.....+...-- .-.+.|.+ ..+.|++++.+..|.-|...
T Consensus 146 ~~IcVQS~DG~L~~feqe~~~f~~~lp~~ll---PgPl~Y~~--~tDsfvt~sss~~l~~Yky~ 204 (418)
T PF14727_consen 146 DFICVQSMDGSLSFFEQESFAFSRFLPDFLL---PGPLCYCP--RTDSFVTASSSWTLECYKYQ 204 (418)
T ss_pred eEEEEEecCceEEEEeCCcEEEEEEcCCCCC---CcCeEEee--cCCEEEEecCceeEEEecHH
Confidence 5778889999999999665443444443322 34577888 67899999999999999764
No 468
>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=73.14 E-value=25 Score=30.20 Aligned_cols=60 Identities=13% Similarity=0.120 Sum_probs=42.6
Q ss_pred EEEEeecCCcEEEEEccCCCCceEeeecCCcceEEEEEeCCCCeEEEecCCCcEEEEecCCCe
Q 021291 223 NVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHST 285 (314)
Q Consensus 223 ~l~~g~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~iw~~~~~~ 285 (314)
-+++-+.+|++.++.... .+++.. +.--+.+.-++++|++.+|++- ..|.++++.+++..
T Consensus 330 gF~~l~~~G~L~~f~st~-~~~lL~-~~~~~~~~~~~~Sp~~~~Ll~e-~~gki~~~~l~Nr~ 389 (733)
T COG4590 330 GFYSLYRNGTLQSFYSTS-EKLLLF-ERAYQAPQLVAMSPNQAYLLSE-DQGKIRLAQLENRN 389 (733)
T ss_pred eEEEEcCCCceeeeeccc-Ccceeh-hhhhcCcceeeeCcccchheee-cCCceEEEEecCCC
Confidence 678888899999887665 333322 2223366778899999988875 45789999988764
No 469
>KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification]
Probab=72.94 E-value=94 Score=30.10 Aligned_cols=108 Identities=11% Similarity=0.031 Sum_probs=65.6
Q ss_pred ceeccCCCceEEEeecCcCeEEEEecCCCceeeeecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEeecCCcE
Q 021291 154 DDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSI 233 (314)
Q Consensus 154 ~~~~~~~~~~~~~~g~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i 233 (314)
.+++|...++++.. ...+++||+-..+.++.... .+ ....+..++ +.- . .+++|...-.+
T Consensus 939 ~Ai~~f~~~~Lagv---G~~l~~YdlG~K~lLRk~e~-------k~---~p~~Is~iq-t~~-----~-RI~VgD~qeSV 998 (1205)
T KOG1898|consen 939 GAICPFQGRVLAGV---GRFLRLYDLGKKKLLRKCEL-------KF---IPNRISSIQ-TYG-----A-RIVVGDIQESV 998 (1205)
T ss_pred eEEeccCCEEEEec---ccEEEEeeCChHHHHhhhhh-------cc---CceEEEEEe-ecc-----e-EEEEeeccceE
Confidence 66778877776433 36899999988777665542 11 234566665 442 2 68888777777
Q ss_pred EEEEccCCCCceEeeec--CCcceEEEEEeCCCCeEEEecCCCcEEEEecC
Q 021291 234 LVWDIRNPGIPLTAMKV--HLEPVLCLSIDESCNGGISGGADQKIVLYNLD 282 (314)
Q Consensus 234 ~vwd~~~~~~~~~~~~~--h~~~v~~~~~~~~~~~l~s~s~dg~i~iw~~~ 282 (314)
.++-.+...+.+..+-. -...|+++.+-..+ .++.+..=|.+.+-.+.
T Consensus 999 ~~~~y~~~~n~l~~fadD~~pR~Vt~~~~lD~~-tvagaDrfGNi~~vR~P 1048 (1205)
T KOG1898|consen 999 HFVRYRREDNQLIVFADDPVPRHVTALELLDYD-TVAGADRFGNIAVVRIP 1048 (1205)
T ss_pred EEEEEecCCCeEEEEeCCCccceeeEEEEecCC-ceeeccccCcEEEEECC
Confidence 77666643555555542 23457777663333 35666555666665544
No 470
>PF09826 Beta_propel: Beta propeller domain; InterPro: IPR019198 This entry consists of predicted secreted proteins containing a C-terminal beta-propeller domain distantly related to WD-40 repeats.
Probab=72.77 E-value=71 Score=28.59 Aligned_cols=75 Identities=8% Similarity=0.076 Sum_probs=54.9
Q ss_pred EecCCCCCCceEEEEeec----------CCcEEEEEccCCCCceEeee--cCCcceEEEEEeCCCCeEEEecCCCcEEEE
Q 021291 212 AYLPSKSQGFVNVLAGYE----------DGSILVWDIRNPGIPLTAMK--VHLEPVLCLSIDESCNGGISGGADQKIVLY 279 (314)
Q Consensus 212 ~~~p~~~~g~~~l~~g~~----------dg~i~vwd~~~~~~~~~~~~--~h~~~v~~~~~~~~~~~l~s~s~dg~i~iw 279 (314)
.|+-|+-+|.+.+|+... .+.|.+.| .+ -+.+..+. +-.+.|.++.|-.+.-+++|--.=--+.+.
T Consensus 275 qFsmdE~~G~LRvaTT~~~~~~~~~~~s~N~lyVLD-~~-L~~vG~l~~la~gE~IysvRF~Gd~~Y~VTFrqvDPLfvi 352 (521)
T PF09826_consen 275 QFSMDEYDGYLRVATTSGNWWWDSEDTSSNNLYVLD-ED-LKIVGSLEGLAPGERIYSVRFMGDRAYLVTFRQVDPLFVI 352 (521)
T ss_pred cccEeccCCEEEEEEecCcccccCCCCceEEEEEEC-CC-CcEeEEccccCCCceEEEEEEeCCeEEEEEEeecCceEEE
Confidence 477777778767777552 34677777 33 55666665 346789999999998899998875569999
Q ss_pred ecCCCeeeE
Q 021291 280 NLDHSTYVL 288 (314)
Q Consensus 280 ~~~~~~~~~ 288 (314)
|+..++...
T Consensus 353 DLsdP~~P~ 361 (521)
T PF09826_consen 353 DLSDPANPK 361 (521)
T ss_pred ECCCCCCCc
Confidence 999876554
No 471
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=72.48 E-value=54 Score=27.14 Aligned_cols=121 Identities=15% Similarity=0.207 Sum_probs=62.0
Q ss_pred ceeccCCCceEEEeecCc------CeEEEEecCCCceeeeecccccCCCCC---cCCCCCceeeeEEEecCCCCCCceEE
Q 021291 154 DDVPAEGPKYMAVAGEQL------SEVEIWDLNTAERCTRLHQNSCGGSPN---FSSKGRGMCMAVQAYLPSKSQGFVNV 224 (314)
Q Consensus 154 ~~~~~~~~~~~~~~g~~d------~~i~vwd~~~~~~~~~~~~~~~~~~~~---h~~~~~~~~~~~~~~~p~~~~g~~~l 224 (314)
+++.++|. +++ +...+ ..|..++.. ++....+..+....... .....+...-+++ ++|+ |+ .|
T Consensus 90 i~~~~~g~-~~i-s~E~~~~~~~~p~I~~~~~~-G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la-~~~d---G~-~l 161 (326)
T PF13449_consen 90 IAVPPDGS-FWI-SSEGGRTGGIPPRIRRFDLD-GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLA-VSPD---GR-TL 161 (326)
T ss_pred eEEecCCC-EEE-EeCCccCCCCCCEEEEECCC-CcccceEccccccccccCccccccCCCCeEEEE-ECCC---CC-EE
Confidence 66756664 333 45446 778888876 66665553222110000 1112344566776 9988 54 44
Q ss_pred EEeecC-----C--c-------EEEE--EccCCCCceEe----eec-----CCcceEEEEEeCCCCeEEEec-----CCC
Q 021291 225 LAGYED-----G--S-------ILVW--DIRNPGIPLTA----MKV-----HLEPVLCLSIDESCNGGISGG-----ADQ 274 (314)
Q Consensus 225 ~~g~~d-----g--~-------i~vw--d~~~~~~~~~~----~~~-----h~~~v~~~~~~~~~~~l~s~s-----~dg 274 (314)
++..+. + . ++++ |..+.+.+... +.. ....|..+.+-+++++|+.=- ...
T Consensus 162 ~~~~E~~l~~d~~~~~~~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~d~~lLvLER~~~~~~~~ 241 (326)
T PF13449_consen 162 FAAMESPLKQDGPRANPDNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALPDGRLLVLERDFSPGTGN 241 (326)
T ss_pred EEEECccccCCCcccccccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEECCCcEEEEEccCCCCccc
Confidence 444332 2 1 4554 44432323322 222 345788899988888665432 234
Q ss_pred cEEEEecC
Q 021291 275 KIVLYNLD 282 (314)
Q Consensus 275 ~i~iw~~~ 282 (314)
.++|+.+.
T Consensus 242 ~~ri~~v~ 249 (326)
T PF13449_consen 242 YKRIYRVD 249 (326)
T ss_pred eEEEEEEE
Confidence 45555443
No 472
>KOG1896 consensus mRNA cleavage and polyadenylation factor II complex, subunit CFT1 (CPSF subunit) [RNA processing and modification]
Probab=72.40 E-value=42 Score=32.77 Aligned_cols=127 Identities=10% Similarity=0.168 Sum_probs=0.0
Q ss_pred CCCCCceEEec-------CCCCceeEEEEccCCCEEEEecCCCeEEEEeCCCCeEEEEEeccCCcccEEEEEEcccCCCC
Q 021291 5 PPPPDPVAVLR-------GHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLN 77 (314)
Q Consensus 5 ~~~~~~~~~l~-------~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 77 (314)
|.|++|....+ .-+++|.+++=- +| +|+++.... |.||+++....+.-..--.-+-.|.++..-. +
T Consensus 1077 PepgkP~t~~KlKel~~eE~KGtVsavceV-~G-~l~~~~GqK-I~v~~l~r~~~ligVaFiD~~~yv~s~~~vk----n 1149 (1366)
T KOG1896|consen 1077 PEPGKPFTKNKLKELYIEEQKGTVSAVCEV-RG-HLLSSQGQK-IIVRKLDRDSELIGVAFIDLPLYVHSMKVVK----N 1149 (1366)
T ss_pred CCCCCCcccceeeeeehhhcccceEEEEEe-cc-EEEEccCcE-EEEEEeccCCcceeeEEeccceeEEehhhhh----h
Q ss_pred eEEEeecCCeEEEEeCCCCCCCCCCeeeeecceeeEEEeeeeeccccccccCCCCcceeeccCCceeeecCCCCCCceec
Q 021291 78 KVISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVP 157 (314)
Q Consensus 78 ~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (314)
+|+.|.--..|.+.-.... ...+.........+.... +.|-
T Consensus 1150 lIl~gDV~ksisfl~fqee------p~rlsL~srd~~~l~v~s---------------------------------~EFL 1190 (1366)
T KOG1896|consen 1150 LILAGDVMKSISFLGFQEE------PYRLSLLSRDFEPLNVYS---------------------------------TEFL 1190 (1366)
T ss_pred heehhhhhhceEEEEEccC------ceEEEEeecCCchhhcee---------------------------------eeeE
Q ss_pred cCCCceEEEeecCcCeEEEE
Q 021291 158 AEGPKYMAVAGEQLSEVEIW 177 (314)
Q Consensus 158 ~~~~~~~~~~g~~d~~i~vw 177 (314)
-+|..+-.+++..|+.|.+|
T Consensus 1191 Vdg~~L~flvsDa~rNi~vy 1210 (1366)
T KOG1896|consen 1191 VDGSNLSFLVSDADRNIHVY 1210 (1366)
T ss_pred EcCCeeEEEEEcCCCcEEEE
No 473
>PF14779 BBS1: Ciliary BBSome complex subunit 1
Probab=70.92 E-value=51 Score=26.16 Aligned_cols=73 Identities=18% Similarity=0.162 Sum_probs=47.7
Q ss_pred CCCceeEEEEcc----C---CCEEEEecCCCeEEEEeCCCCeEEEEEeccCCcccEEEE-EEcccCCCCeEEEeecCCeE
Q 021291 17 HRASVTDVCFHQ----T---KPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSV-ATGPSIGLNKVISQGRDGTV 88 (314)
Q Consensus 17 h~~~v~~~~~~~----~---~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~~~~l~s~~~dg~v 88 (314)
+...|+|++--. + -..|+.|+.+|.|.|.|.+.-..+..++...-+..|... .|.. -.-+++.++.||.|
T Consensus 175 ~~t~ITcm~tikk~~~d~~a~scLViGTE~~~i~iLd~~af~il~~~~lpsvPv~i~~~G~~de--vdyRI~Va~Rdg~i 252 (257)
T PF14779_consen 175 RQTVITCMATIKKSSADEDAVSCLVIGTESGEIYILDPQAFTILKQVQLPSVPVFISVSGQYDE--VDYRIVVACRDGKI 252 (257)
T ss_pred cCceeEEeeeecccccCCCCcceEEEEecCCeEEEECchhheeEEEEecCCCceEEEEEeeeec--cceEEEEEeCCCEE
Confidence 456788887543 1 147999999999999998877777777666533111111 1221 12568888999988
Q ss_pred EEE
Q 021291 89 KCW 91 (314)
Q Consensus 89 ~iw 91 (314)
.+.
T Consensus 253 y~i 255 (257)
T PF14779_consen 253 YTI 255 (257)
T ss_pred EEE
Confidence 763
No 474
>PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins. Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A.
Probab=70.85 E-value=75 Score=28.06 Aligned_cols=41 Identities=15% Similarity=0.187 Sum_probs=24.5
Q ss_pred eeeeEEEecCCCCCCceEEEEeecCCcEEEEEccCCCCceEeeecC
Q 021291 206 MCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVH 251 (314)
Q Consensus 206 ~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~h 251 (314)
-+.++. +.|. ++. +++++-....|...|.++ ++....+..+
T Consensus 272 H~Nsi~-yd~~--dd~-iivSsR~~s~V~~Id~~t-~~i~Wilg~~ 312 (477)
T PF05935_consen 272 HINSID-YDPS--DDS-IIVSSRHQSAVIKIDYRT-GKIKWILGPP 312 (477)
T ss_dssp -EEEEE-EETT--TTE-EEEEETTT-EEEEEE-TT-S-EEEEES-S
T ss_pred ccCccE-EeCC--CCe-EEEEcCcceEEEEEECCC-CcEEEEeCCC
Confidence 467776 8874 133 677776666888888776 6666666554
No 475
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=70.61 E-value=61 Score=26.93 Aligned_cols=57 Identities=19% Similarity=0.110 Sum_probs=37.3
Q ss_pred CceEEEEeecCCcEEEEEccCCCCceEe---eecCCcceEEEEEeCCCCeEEEecCCCcEE
Q 021291 220 GFVNVLAGYEDGSILVWDIRNPGIPLTA---MKVHLEPVLCLSIDESCNGGISGGADQKIV 277 (314)
Q Consensus 220 g~~~l~~g~~dg~i~vwd~~~~~~~~~~---~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~ 277 (314)
|. ++++....+.|....+...+..... +......+..|++.|||.++++-+.+|.|.
T Consensus 271 g~-~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~r~~~v~~~pDG~Lyv~~d~~G~iy 330 (331)
T PF07995_consen 271 GD-LFVADYGGGRIWRLDLDEDGSVTEEEEFLGGFGGRPRDVAQGPDGALYVSDDSDGKIY 330 (331)
T ss_dssp TE-EEEEETTTTEEEEEEEETTEEEEEEEEECTTSSS-EEEEEEETTSEEEEEE-TTTTEE
T ss_pred Cc-EEEecCCCCEEEEEeeecCCCccceEEccccCCCCceEEEEcCCCeEEEEECCCCeEe
Confidence 44 6666666778888888752332211 223445799999999999888888888774
No 476
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=70.23 E-value=55 Score=26.28 Aligned_cols=241 Identities=9% Similarity=0.013 Sum_probs=123.3
Q ss_pred CceeEEEEccCCCEEEEecCCCeEEEEeCCCCeEEEEEeccCCcccEEEEEEcccCCCCeEEEeecCCeEEEEeCCCCCC
Q 021291 19 ASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGGL 98 (314)
Q Consensus 19 ~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~ 98 (314)
..-..++-.|||..-+++...|.|--.|-.+|+....--+.. ..-..|..-| |+..-++=+.. -|.-.|-++.+.
T Consensus 62 ~ap~dvapapdG~VWft~qg~gaiGhLdP~tGev~~ypLg~G--a~Phgiv~gp--dg~~Witd~~~-aI~R~dpkt~ev 136 (353)
T COG4257 62 SAPFDVAPAPDGAVWFTAQGTGAIGHLDPATGEVETYPLGSG--ASPHGIVVGP--DGSAWITDTGL-AIGRLDPKTLEV 136 (353)
T ss_pred CCccccccCCCCceEEecCccccceecCCCCCceEEEecCCC--CCCceEEECC--CCCeeEecCcc-eeEEecCcccce
Confidence 345677888899888888888888888888887765544433 2356777777 76665553333 344445554432
Q ss_pred CCCCeeeeec--ceeeEEEeeeeeccccccccCCCCcceeeccCCceeeecCCCCCC-----ceeccCCCceEEEeecCc
Q 021291 99 SSNPSLTIKT--NSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSK-----DDVPAEGPKYMAVAGEQL 171 (314)
Q Consensus 99 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~g~~d 171 (314)
.. +.+.. .........++.....-.....+... .++........+..-+. ++..|+|+..++ .-.+
T Consensus 137 t~---f~lp~~~a~~nlet~vfD~~G~lWFt~q~G~yG--rLdPa~~~i~vfpaPqG~gpyGi~atpdGsvwya--slag 209 (353)
T COG4257 137 TR---FPLPLEHADANLETAVFDPWGNLWFTGQIGAYG--RLDPARNVISVFPAPQGGGPYGICATPDGSVWYA--SLAG 209 (353)
T ss_pred EE---eecccccCCCcccceeeCCCccEEEeeccccce--ecCcccCceeeeccCCCCCCcceEECCCCcEEEE--eccc
Confidence 21 11111 11111111111111111111111111 22333333333332222 888899976553 3345
Q ss_pred CeEEEEecCCCceeeeecccccCCCCC-cCCCCCceeeeEEEecCCCCCCceEEEEeecCCcEEEEEccCCCCceEeeec
Q 021291 172 SEVEIWDLNTAERCTRLHQNSCGGSPN-FSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKV 250 (314)
Q Consensus 172 ~~i~vwd~~~~~~~~~~~~~~~~~~~~-h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~ 250 (314)
..|-..|..++.. ..+..+. + +.. ...+- -+|. |+ .-++-...+.+..||-.+..-.-..+.+
T Consensus 210 naiaridp~~~~a-ev~p~P~-----~~~~g-----sRriw-sdpi---g~-~wittwg~g~l~rfdPs~~sW~eypLPg 273 (353)
T COG4257 210 NAIARIDPFAGHA-EVVPQPN-----ALKAG-----SRRIW-SDPI---GR-AWITTWGTGSLHRFDPSVTSWIEYPLPG 273 (353)
T ss_pred cceEEcccccCCc-ceecCCC-----ccccc-----ccccc-cCcc---Cc-EEEeccCCceeeEeCcccccceeeeCCC
Confidence 6788888877632 2232110 1 111 11111 2222 55 4555666778888887652322333445
Q ss_pred CCcceEEEEEeCCCCeEEEecCCCcEEEEecCCCeee
Q 021291 251 HLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTYV 287 (314)
Q Consensus 251 h~~~v~~~~~~~~~~~l~s~s~dg~i~iw~~~~~~~~ 287 (314)
....-.++..+..++.-.+--..|.|.-+|-++.+..
T Consensus 274 s~arpys~rVD~~grVW~sea~agai~rfdpeta~ft 310 (353)
T COG4257 274 SKARPYSMRVDRHGRVWLSEADAGAIGRFDPETARFT 310 (353)
T ss_pred CCCCcceeeeccCCcEEeeccccCceeecCcccceEE
Confidence 5555667777777765555555667777777665543
No 477
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=69.56 E-value=55 Score=26.04 Aligned_cols=77 Identities=14% Similarity=0.179 Sum_probs=43.8
Q ss_pred CceeEEEEccCCCEEEEecCCCeEEEEeCCCCeEEEEEe------------ccCCcccEEEEEEcccCCCCeEEEeecCC
Q 021291 19 ASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSW------------VHSAAHGIVSVATGPSIGLNKVISQGRDG 86 (314)
Q Consensus 19 ~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~------------~~~~~~~v~~~~~~~~~~~~~l~s~~~dg 86 (314)
..|..+...++-+.|++-+ |+.+.++++..-.....-. .......+...+......+...+.+....
T Consensus 36 ~~I~ql~vl~~~~~llvLs-d~~l~~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk 114 (275)
T PF00780_consen 36 SSITQLSVLPELNLLLVLS-DGQLYVYDLDSLEPVSTSAPLAFPKSRSLPTKLPETKGVSFFAVNGGHEGSRRLCVAVKK 114 (275)
T ss_pred ceEEEEEEecccCEEEEEc-CCccEEEEchhhccccccccccccccccccccccccCCeeEEeeccccccceEEEEEECC
Confidence 3499999999776666554 5999999987643332100 11111234444411111334444455556
Q ss_pred eEEEEeCCCC
Q 021291 87 TVKCWDIENG 96 (314)
Q Consensus 87 ~v~iwd~~~~ 96 (314)
+|.+|.....
T Consensus 115 ~i~i~~~~~~ 124 (275)
T PF00780_consen 115 KILIYEWNDP 124 (275)
T ss_pred EEEEEEEECC
Confidence 9999988764
No 478
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=68.91 E-value=93 Score=29.73 Aligned_cols=70 Identities=11% Similarity=0.099 Sum_probs=42.9
Q ss_pred EccCCCEEEEecCCCeEEEEeCCCCeEE---EE------EeccCCcccEEEEEEcccCCCCeEEEeecCCeEEEEeCCCC
Q 021291 26 FHQTKPILFAGTTGGELRIWDTVQHRTV---SS------SWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENG 96 (314)
Q Consensus 26 ~~~~~~~l~s~~~dg~v~iwd~~~~~~~---~~------~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~ 96 (314)
+..-|+.|..|+.||.+.+|.+.+.... .. +..+-...+|..+...+ .-..++. -.|+.|.++++.+.
T Consensus 22 va~~~~~l~vGt~~G~L~lY~i~~~~~~~~~~~~~~~~~~~~~~~kk~i~~l~~~~--~~~~ll~-l~dsqi~~~~l~~~ 98 (877)
T KOG2063|consen 22 VAAYGNHLYVGTRDGDLYLYSIYERGNPESVELVTETVKFEKEFSKKPINKLLVCA--SLELLLI-LSDSQIAVHKLPEL 98 (877)
T ss_pred HHHhCCEEEEEcCCCcEEEEeccccccccchhhhcchhHHhhhhccchhHHHhhcc--hhcchhe-ecCCcceeeecCcc
Confidence 3445789999999999999998754211 11 11111124577777766 3333333 44677888888765
Q ss_pred CC
Q 021291 97 GL 98 (314)
Q Consensus 97 ~~ 98 (314)
+.
T Consensus 99 ~~ 100 (877)
T KOG2063|consen 99 EP 100 (877)
T ss_pred cc
Confidence 43
No 479
>PRK10115 protease 2; Provisional
Probab=68.05 E-value=1.1e+02 Score=28.69 Aligned_cols=33 Identities=12% Similarity=0.166 Sum_probs=23.6
Q ss_pred cEEEEEEcccCCCCeEEEeec-----CCeEEEEeCCCCCC
Q 021291 64 GIVSVATGPSIGLNKVISQGR-----DGTVKCWDIENGGL 98 (314)
Q Consensus 64 ~v~~~~~~~~~~~~~l~s~~~-----dg~v~iwd~~~~~~ 98 (314)
.+..+.++| ++++|+.+.. .-.|++-|+.++..
T Consensus 128 ~l~~~~~Sp--dg~~la~~~d~~G~E~~~l~v~d~~tg~~ 165 (686)
T PRK10115 128 TLGGMAITP--DNTIMALAEDFLSRRQYGIRFRNLETGNW 165 (686)
T ss_pred EEeEEEECC--CCCEEEEEecCCCcEEEEEEEEECCCCCC
Confidence 367788999 9888775432 23588889987753
No 480
>PF01731 Arylesterase: Arylesterase; InterPro: IPR002640 The serum paraoxonases/arylesterases are enzymes that catalyse the hydrolysis of the toxic metabolites of a variety of organophosphorus insecticides. The enzymes hydrolyse a broad spectrum of organophosphate substrates, including paraoxon and a number of aromatic carboxylic acid esters (e.g., phenyl acetate), and hence confer resistance to organophosphate toxicity []. Mammals have 3 distinct paraoxonase types, termed PON1-3 [, ]. In mice and humans, the PON genes are found on the same chromosome in close proximity. PON activity has been found in variety of tissues, with highest levels in liver and serum - the source of serum PON is thought to be the liver. Unlike mammals, fish and avian species lack paraoxonase activity. Human and rabbit PONs appear to have two distinct Ca2+ binding sites, one required for stability and one required for catalytic activity. The Ca2+ dependency of PONs suggests a mechanism of hydrolysis where Ca2+ acts as the electrophillic catalyst, like that proposed for phospholipase A2. The paraoxonase enzymes, PON1 and PON3, are high density lipoprotein (HDL)- associated proteins capable of preventing oxidative modification of low density lipoproteins (LPL) []. Although PON2 has oxidative properties, the enzyme does not associate with HDL. Within a given species, PON1, PON2 and PON3 share ~60% amino acid sequence identity, whereas between mammalian species particular PONs (1,2 or 3) share 79-90% identity at the amino acid level. Human PON1 and PON3 share numerous conserved phosphorylation and N-glycosylation sites; however, it is not known whether the PON proteins are modified at these sites, or whether modification at these sites is required for activity in vivo []. This family consists of arylesterases (Also known as serum paraoxonase) 3.1.1.2 from EC. These enzymes hydrolyse organophosphorus esters such as paraoxon and are found in the liver and blood. They confer resistance to organophosphate toxicity []. Human arylesterase (PON1) P27169 from SWISSPROT is associated with HDL and may protect against LDL oxidation [].; GO: 0004064 arylesterase activity
Probab=67.55 E-value=29 Score=22.12 Aligned_cols=31 Identities=10% Similarity=-0.001 Sum_probs=23.3
Q ss_pred cceEEEEEeCCCCeEEEe-cCCCcEEEEecCC
Q 021291 253 EPVLCLSIDESCNGGISG-GADQKIVLYNLDH 283 (314)
Q Consensus 253 ~~v~~~~~~~~~~~l~s~-s~dg~i~iw~~~~ 283 (314)
..-+.|.++|++++|..+ ...+.|++|+...
T Consensus 54 ~~aNGI~~s~~~k~lyVa~~~~~~I~vy~~~~ 85 (86)
T PF01731_consen 54 SFANGIAISPDKKYLYVASSLAHSIHVYKRHK 85 (86)
T ss_pred CCCceEEEcCCCCEEEEEeccCCeEEEEEecC
Confidence 345789999998887554 4578899998753
No 481
>PF09826 Beta_propel: Beta propeller domain; InterPro: IPR019198 This entry consists of predicted secreted proteins containing a C-terminal beta-propeller domain distantly related to WD-40 repeats.
Probab=67.53 E-value=93 Score=27.87 Aligned_cols=56 Identities=14% Similarity=0.036 Sum_probs=41.3
Q ss_pred CeEEEEeCCCCeEEEEEeccCCcccEEEEEEcccCCCCeEEEeecCCeEEEEeCCCCCC
Q 021291 40 GELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGGL 98 (314)
Q Consensus 40 g~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~ 98 (314)
..|.|.| ++.+.+..+.+-...+.|.++.|-- +.-+++|--.=.-+.+.|+.+.+.
T Consensus 304 N~lyVLD-~~L~~vG~l~~la~gE~IysvRF~G--d~~Y~VTFrqvDPLfviDLsdP~~ 359 (521)
T PF09826_consen 304 NNLYVLD-EDLKIVGSLEGLAPGERIYSVRFMG--DRAYLVTFRQVDPLFVIDLSDPAN 359 (521)
T ss_pred EEEEEEC-CCCcEeEEccccCCCceEEEEEEeC--CeEEEEEEeecCceEEEECCCCCC
Confidence 4577777 6667777776555447799999988 767788776655788999987653
No 482
>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4.3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.
Probab=67.02 E-value=31 Score=22.18 Aligned_cols=41 Identities=20% Similarity=0.018 Sum_probs=27.4
Q ss_pred cCCCeEEEEeCCCCeEEEEEeccCCcccEEEEEEcccCCCCeEEEe
Q 021291 37 TTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQ 82 (314)
Q Consensus 37 ~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~ 82 (314)
..+|.+.-||..+++....+.+-. .-..|+.++ |++.++.+
T Consensus 34 ~~~GRll~ydp~t~~~~vl~~~L~---fpNGVals~--d~~~vlv~ 74 (89)
T PF03088_consen 34 RPTGRLLRYDPSTKETTVLLDGLY---FPNGVALSP--DESFVLVA 74 (89)
T ss_dssp ---EEEEEEETTTTEEEEEEEEES---SEEEEEE-T--TSSEEEEE
T ss_pred CCCcCEEEEECCCCeEEEehhCCC---ccCeEEEcC--CCCEEEEE
Confidence 346889999999887655555443 258999999 88876654
No 483
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=66.63 E-value=63 Score=25.60 Aligned_cols=66 Identities=12% Similarity=-0.039 Sum_probs=40.9
Q ss_pred ceeEEEEccCCCEEEEec---CCCeEEEEeCCCCeEEEEEeccCCcccEEEEEEcccCCCCeEEEeecCCeEEEEe
Q 021291 20 SVTDVCFHQTKPILFAGT---TGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWD 92 (314)
Q Consensus 20 ~v~~~~~~~~~~~l~s~~---~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd 92 (314)
.+...+++++++.+|... ....+.++..... ....+.+ ..+..-.|.+ ++...+....+...+++.
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~~-~~~~~~g----~~l~~PS~d~--~g~~W~v~~~~~~~~~~~ 93 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAGGP-VRPVLTG----GSLTRPSWDP--DGWVWTVDDGSGGVRVVR 93 (253)
T ss_pred cccceEECCCCCeEEEEEEcCCCCEEEEEcCCCc-ceeeccC----CccccccccC--CCCEEEEEcCCCceEEEE
Confidence 688999999998777655 3345666654322 2222222 2378889999 755555555566666664
No 484
>PF14269 Arylsulfotran_2: Arylsulfotransferase (ASST)
Probab=66.01 E-value=73 Score=26.07 Aligned_cols=73 Identities=10% Similarity=0.048 Sum_probs=53.3
Q ss_pred ceeEEEEccCCCEEEEecCCCeEEEEeCCCCeEEEEEeccCCcc-c--EEEEEEcccCCCCeEEEeecCCeEEEEeCC
Q 021291 20 SVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAH-G--IVSVATGPSIGLNKVISQGRDGTVKCWDIE 94 (314)
Q Consensus 20 ~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~-~--v~~~~~~~~~~~~~l~s~~~dg~v~iwd~~ 94 (314)
-|+++...++|++|+|.-.-.+|.+.|-.+|+.+..+.+..... . -...+|-. +-+++-....+++|.++|=.
T Consensus 145 HiNsV~~~~~G~yLiS~R~~~~i~~I~~~tG~I~W~lgG~~~~df~~~~~~f~~QH--dar~~~~~~~~~~IslFDN~ 220 (299)
T PF14269_consen 145 HINSVDKDDDGDYLISSRNTSTIYKIDPSTGKIIWRLGGKRNSDFTLPATNFSWQH--DARFLNESNDDGTISLFDNA 220 (299)
T ss_pred EeeeeeecCCccEEEEecccCEEEEEECCCCcEEEEeCCCCCCcccccCCcEeecc--CCEEeccCCCCCEEEEEcCC
Confidence 46788888899999999998999999999999999987662110 0 11234444 54555566778999999974
No 485
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=64.35 E-value=26 Score=28.25 Aligned_cols=56 Identities=13% Similarity=0.107 Sum_probs=38.4
Q ss_pred CCeEEEEeCCCCeEEEEEeccCCcccEEEEEEcccCCCCeEEEee------cCCeEEEEeCCCCCC
Q 021291 39 GGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQG------RDGTVKCWDIENGGL 98 (314)
Q Consensus 39 dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~------~dg~v~iwd~~~~~~ 98 (314)
-..|++||..+.+...--.+-. ..|.+|.|.. +.+.++.|. ....+..||..+...
T Consensus 15 C~~lC~yd~~~~qW~~~g~~i~--G~V~~l~~~~--~~~Llv~G~ft~~~~~~~~la~yd~~~~~w 76 (281)
T PF12768_consen 15 CPGLCLYDTDNSQWSSPGNGIS--GTVTDLQWAS--NNQLLVGGNFTLNGTNSSNLATYDFKNQTW 76 (281)
T ss_pred CCEEEEEECCCCEeecCCCCce--EEEEEEEEec--CCEEEEEEeeEECCCCceeEEEEecCCCee
Confidence 3469999988766554433333 4599999986 656666654 355788899887643
No 486
>COG1770 PtrB Protease II [Amino acid transport and metabolism]
Probab=64.01 E-value=1.2e+02 Score=27.83 Aligned_cols=58 Identities=10% Similarity=-0.001 Sum_probs=37.1
Q ss_pred eeEEEEccCCCEEEEe-----cCCCeEEEEeCCCCeEEEEEeccCCcccEEEEEEcccCCCCeEEEeec
Q 021291 21 VTDVCFHQTKPILFAG-----TTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGR 84 (314)
Q Consensus 21 v~~~~~~~~~~~l~s~-----~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~ 84 (314)
+-.++.+||++++|-+ +..=++++-|+.+++.+..... +....++|.+ |++.|+-...
T Consensus 131 Lg~~~~s~D~~~la~s~D~~G~e~y~lr~kdL~tg~~~~d~i~----~~~~~~~Wa~--d~~~lfYt~~ 193 (682)
T COG1770 131 LGAASISPDHNLLAYSVDVLGDEQYTLRFKDLATGEELPDEIT----NTSGSFAWAA--DGKTLFYTRL 193 (682)
T ss_pred eeeeeeCCCCceEEEEEecccccEEEEEEEecccccccchhhc----ccccceEEec--CCCeEEEEEE
Confidence 4557778888877743 3344688888888776543221 2256788998 7776664443
No 487
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=63.83 E-value=90 Score=26.37 Aligned_cols=70 Identities=13% Similarity=0.122 Sum_probs=40.2
Q ss_pred CceeEEEEccCCCEEEEec-----------CCC-eEEEEeCCC--Ce--EEEEEeccCCcccEEEEEEcccCCCCeEEEe
Q 021291 19 ASVTDVCFHQTKPILFAGT-----------TGG-ELRIWDTVQ--HR--TVSSSWVHSAAHGIVSVATGPSIGLNKVISQ 82 (314)
Q Consensus 19 ~~v~~~~~~~~~~~l~s~~-----------~dg-~v~iwd~~~--~~--~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~ 82 (314)
.....|+|.++|+++++-. ..+ .|.+++-.+ |+ ....+.... .....|++.+ ++ +++ +
T Consensus 14 ~~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l--~~p~Gi~~~~--~G-lyV-~ 87 (367)
T TIGR02604 14 RNPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEEL--SMVTGLAVAV--GG-VYV-A 87 (367)
T ss_pred CCCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCC--CCccceeEec--CC-EEE-e
Confidence 4567899999998877643 223 677776432 32 223333222 3368899988 76 444 4
Q ss_pred ecCCeEEEEeCC
Q 021291 83 GRDGTVKCWDIE 94 (314)
Q Consensus 83 ~~dg~v~iwd~~ 94 (314)
+.....++.|..
T Consensus 88 ~~~~i~~~~d~~ 99 (367)
T TIGR02604 88 TPPDILFLRDKD 99 (367)
T ss_pred CCCeEEEEeCCC
Confidence 444333344544
No 488
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=63.57 E-value=1e+02 Score=26.98 Aligned_cols=109 Identities=9% Similarity=-0.024 Sum_probs=53.8
Q ss_pred ceeccCCCceEEEeecCcCeEEEEecCCCcee--eeecccccCCCCCcCCCCCceeeeEEEecCCC---CCCceEEEEee
Q 021291 154 DDVPAEGPKYMAVAGEQLSEVEIWDLNTAERC--TRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSK---SQGFVNVLAGY 228 (314)
Q Consensus 154 ~~~~~~~~~~~~~~g~~d~~i~vwd~~~~~~~--~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~---~~g~~~l~~g~ 228 (314)
++|.|+|. +++ +-...|.|++++..++... ..+.. -......+-...++ ++|+- .... +|....
T Consensus 35 maflPDG~-llV-tER~~G~I~~v~~~~~~~~~~~~l~~-------v~~~~ge~GLlgla-l~PdF~~~~~n~-~lYvsy 103 (454)
T TIGR03606 35 LLWGPDNQ-LWV-TERATGKILRVNPETGEVKVVFTLPE-------IVNDAQHNGLLGLA-LHPDFMQEKGNP-YVYISY 103 (454)
T ss_pred EEEcCCCe-EEE-EEecCCEEEEEeCCCCceeeeecCCc-------eeccCCCCceeeEE-ECCCccccCCCc-EEEEEE
Confidence 78999985 443 3332489999986654322 12220 00011244567787 99984 3233 333332
Q ss_pred ----------cCCcEEEEEccCC----CCceEeeecC----CcceEEEEEeCCCCeEEEecCC
Q 021291 229 ----------EDGSILVWDIRNP----GIPLTAMKVH----LEPVLCLSIDESCNGGISGGAD 273 (314)
Q Consensus 229 ----------~dg~i~vwd~~~~----~~~~~~~~~h----~~~v~~~~~~~~~~~l~s~s~d 273 (314)
....|.-|.+... ......+..- ...-..|+|.|||.++++.+..
T Consensus 104 t~~~~~~~~~~~~~I~R~~l~~~~~~l~~~~~Il~~lP~~~~H~GgrI~FgPDG~LYVs~GD~ 166 (454)
T TIGR03606 104 TYKNGDKELPNHTKIVRYTYDKSTQTLEKPVDLLAGLPAGNDHNGGRLVFGPDGKIYYTIGEQ 166 (454)
T ss_pred eccCCCCCccCCcEEEEEEecCCCCccccceEEEecCCCCCCcCCceEEECCCCcEEEEECCC
Confidence 1223444544311 1111122211 1123468899999877665544
No 489
>PF08954 DUF1900: Domain of unknown function (DUF1900); InterPro: IPR015049 This domain is predominantly found in the structural protein coronin, and is duplicated in some sequences. It has no known function []. ; PDB: 2B4E_A 2AQ5_A.
Probab=60.41 E-value=28 Score=24.48 Aligned_cols=56 Identities=13% Similarity=0.181 Sum_probs=28.1
Q ss_pred CCCceeEEEEccCCCEEEE-ecCCCeEEEEeCCCCe-EEEEEeccCCcccEEEEEEcc
Q 021291 17 HRASVTDVCFHQTKPILFA-GTTGGELRIWDTVQHR-TVSSSWVHSAAHGIVSVATGP 72 (314)
Q Consensus 17 h~~~v~~~~~~~~~~~l~s-~~~dg~v~iwd~~~~~-~~~~~~~~~~~~~v~~~~~~~ 72 (314)
....+.---|.+|-+.|+. |=.|++|+.|.+...+ .+..+..+....+...+++-|
T Consensus 9 ~s~g~L~P~yD~dt~llyl~gKGD~~ir~yEv~~~~p~l~~l~~~~s~~~~~G~~~lP 66 (136)
T PF08954_consen 9 TSSGVLMPFYDEDTNLLYLAGKGDGNIRYYEVSDESPYLHYLSEYRSPEPQKGFAFLP 66 (136)
T ss_dssp --SS-EEEEE-TTT-EEEEEETT-S-EEEEEE-SSTTSEEEEEEE--SS--SEEEE--
T ss_pred CCCceeEeeEcCCCCEEEEEeccCcEEEEEEEcCCCCceEEccccccCCCeEeeEecC
Confidence 3455666778887776655 4559999999997663 333444444445678899988
No 490
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=59.57 E-value=61 Score=26.83 Aligned_cols=61 Identities=11% Similarity=0.146 Sum_probs=42.5
Q ss_pred eeEEEEccCCCEEEEecCC------CeEEEEeCCCCeEEEEEe-------------ccCCcccEEEEEEcccCCCCeEEE
Q 021291 21 VTDVCFHQTKPILFAGTTG------GELRIWDTVQHRTVSSSW-------------VHSAAHGIVSVATGPSIGLNKVIS 81 (314)
Q Consensus 21 v~~~~~~~~~~~l~s~~~d------g~v~iwd~~~~~~~~~~~-------------~~~~~~~v~~~~~~~~~~~~~l~s 81 (314)
.-+|++.++|.++++.-.+ ..|+.++.. |+.+..+. .........+|+++| +++.|++
T Consensus 87 ~Egi~~~~~g~~~is~E~~~~~~~~p~I~~~~~~-G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~--dG~~l~~ 163 (326)
T PF13449_consen 87 PEGIAVPPDGSFWISSEGGRTGGIPPRIRRFDLD-GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSP--DGRTLFA 163 (326)
T ss_pred hhHeEEecCCCEEEEeCCccCCCCCCEEEEECCC-CcccceEccccccccccCccccccCCCCeEEEEECC--CCCEEEE
Confidence 3468887788888887777 788888866 65544441 122335689999999 9887776
Q ss_pred eec
Q 021291 82 QGR 84 (314)
Q Consensus 82 ~~~ 84 (314)
+.+
T Consensus 164 ~~E 166 (326)
T PF13449_consen 164 AME 166 (326)
T ss_pred EEC
Confidence 654
No 491
>KOG2109 consensus WD40 repeat protein [General function prediction only]
Probab=57.10 E-value=7 Score=34.92 Aligned_cols=73 Identities=16% Similarity=0.254 Sum_probs=0.0
Q ss_pred eEEecCCCCceeEEEEccCCCEEEEecCCCeEEEEeCCCCeEEEEEeccCCcccEEE-----------EEEcccCCCCeE
Q 021291 11 VAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVS-----------VATGPSIGLNKV 79 (314)
Q Consensus 11 ~~~l~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~-----------~~~~~~~~~~~l 79 (314)
+..|+.|..+|..++|.+.+..+++++-.| ..|.+++..+.+.+...... ..+.. ++|+. ..+++
T Consensus 308 i~QfkAhkspiSaLcfdqsgsllViasi~g-~nVnvfRimet~~t~~~~~q-s~~~s~ra~t~aviqdicfs~--~s~~r 383 (788)
T KOG2109|consen 308 IRQFKAHKSPISALCFDQSGSLLVIASITG-RNVNVFRIMETVCTVNVSDQ-SLVVSPRANTAAVIQDICFSE--VSTIR 383 (788)
T ss_pred hhheeeecCcccccccccCceEEEEEeecc-ceeeeEEecccccccccccc-ccccchhcchHHHHHHHhhhh--hcceE
Q ss_pred EEeecCCe
Q 021291 80 ISQGRDGT 87 (314)
Q Consensus 80 ~s~~~dg~ 87 (314)
..++.+|+
T Consensus 384 ~~gsc~Ge 391 (788)
T KOG2109|consen 384 TAGSCEGE 391 (788)
T ss_pred eecccCCC
No 492
>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]
Probab=56.97 E-value=1.8e+02 Score=27.68 Aligned_cols=41 Identities=24% Similarity=0.393 Sum_probs=29.7
Q ss_pred CCCCceEEecCCCCceeEEEEccCCCEEEEecCCCeEEEEeCCCC
Q 021291 6 PPPDPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQH 50 (314)
Q Consensus 6 ~~~~~~~~l~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~ 50 (314)
+.++.+..|.||+ |.+++.+.+..+++ +.+|.|.-|-++..
T Consensus 218 ~iPkrV~gL~gh~--~~qisvs~~HslvL--T~~g~Vys~GlN~~ 258 (1267)
T KOG0783|consen 218 FIPKRVPGLIGHK--VIQISVSHTHSLVL--TKFGSVYSWGLNGS 258 (1267)
T ss_pred ccccccccccccc--eEEEEeecceeEEE--eecceEEEeecCcc
Confidence 3345666677776 78888888776555 47889999987653
No 493
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=56.45 E-value=2.2e+02 Score=28.53 Aligned_cols=61 Identities=15% Similarity=0.164 Sum_probs=36.6
Q ss_pred CCCCCceEEecCCCCceeEEEEccC-CCEEEEecCCCeEEEEeCCCCeEEEEEeccCCcccEEEEEE
Q 021291 5 PPPPDPVAVLRGHRASVTDVCFHQT-KPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVAT 70 (314)
Q Consensus 5 ~~~~~~~~~l~~h~~~v~~~~~~~~-~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~ 70 (314)
+.|++.+..+. |...=..+-+-|. ++.-+ +.|..+.+|+.+++.....+.+-.+. |..+..
T Consensus 66 ~IP~el~eq~~-~~~~~~~mGiFpeI~RaWi--TiDn~L~lWny~~~~e~~~~d~~sht--Il~V~L 127 (1311)
T KOG1900|consen 66 NIPDELLEQFS-NIECKTDMGIFPEIGRAWI--TIDNNLFLWNYESDNELAEYDGLSHT--ILKVGL 127 (1311)
T ss_pred cCCHHHHHHhc-CcceeeeeccchhhcceEE--EeCCeEEEEEcCCCCccccccchhhh--heeeee
Confidence 34444444444 3333333444443 33333 45788999999998888888777755 777764
No 494
>PF01731 Arylesterase: Arylesterase; InterPro: IPR002640 The serum paraoxonases/arylesterases are enzymes that catalyse the hydrolysis of the toxic metabolites of a variety of organophosphorus insecticides. The enzymes hydrolyse a broad spectrum of organophosphate substrates, including paraoxon and a number of aromatic carboxylic acid esters (e.g., phenyl acetate), and hence confer resistance to organophosphate toxicity []. Mammals have 3 distinct paraoxonase types, termed PON1-3 [, ]. In mice and humans, the PON genes are found on the same chromosome in close proximity. PON activity has been found in variety of tissues, with highest levels in liver and serum - the source of serum PON is thought to be the liver. Unlike mammals, fish and avian species lack paraoxonase activity. Human and rabbit PONs appear to have two distinct Ca2+ binding sites, one required for stability and one required for catalytic activity. The Ca2+ dependency of PONs suggests a mechanism of hydrolysis where Ca2+ acts as the electrophillic catalyst, like that proposed for phospholipase A2. The paraoxonase enzymes, PON1 and PON3, are high density lipoprotein (HDL)- associated proteins capable of preventing oxidative modification of low density lipoproteins (LPL) []. Although PON2 has oxidative properties, the enzyme does not associate with HDL. Within a given species, PON1, PON2 and PON3 share ~60% amino acid sequence identity, whereas between mammalian species particular PONs (1,2 or 3) share 79-90% identity at the amino acid level. Human PON1 and PON3 share numerous conserved phosphorylation and N-glycosylation sites; however, it is not known whether the PON proteins are modified at these sites, or whether modification at these sites is required for activity in vivo []. This family consists of arylesterases (Also known as serum paraoxonase) 3.1.1.2 from EC. These enzymes hydrolyse organophosphorus esters such as paraoxon and are found in the liver and blood. They confer resistance to organophosphate toxicity []. Human arylesterase (PON1) P27169 from SWISSPROT is associated with HDL and may protect against LDL oxidation [].; GO: 0004064 arylesterase activity
Probab=56.29 E-value=41 Score=21.46 Aligned_cols=26 Identities=0% Similarity=0.087 Sum_probs=20.6
Q ss_pred ceeccCCCceEEEeecCcCeEEEEecC
Q 021291 154 DDVPAEGPKYMAVAGEQLSEVEIWDLN 180 (314)
Q Consensus 154 ~~~~~~~~~~~~~~g~~d~~i~vwd~~ 180 (314)
+.++|+++.++++ ....+.|++|...
T Consensus 59 I~~s~~~k~lyVa-~~~~~~I~vy~~~ 84 (86)
T PF01731_consen 59 IAISPDKKYLYVA-SSLAHSIHVYKRH 84 (86)
T ss_pred EEEcCCCCEEEEE-eccCCeEEEEEec
Confidence 8899999887764 5557899999765
No 495
>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3.1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.
Probab=55.54 E-value=1.3e+02 Score=25.61 Aligned_cols=74 Identities=18% Similarity=0.233 Sum_probs=47.7
Q ss_pred eeeEEEecCCCCCCceEEEEeecCCcEEEEEccCC--C----CceEeeecCCcceEEEEEeCCCCeEEEecCCCcEEEEe
Q 021291 207 CMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNP--G----IPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYN 280 (314)
Q Consensus 207 ~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~--~----~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~iw~ 280 (314)
++.++.|... .+|..++++...+|.+..|-+... + ++++++.. ...+..+..+....+|..+-.|.-|.-|+
T Consensus 158 ~yGlcly~~~-~~g~~ya~v~~k~G~~~Qy~L~~~~~g~v~~~lVR~f~~-~sQ~EGCVVDDe~g~LYvgEE~~GIW~y~ 235 (381)
T PF02333_consen 158 PYGLCLYRSP-STGALYAFVNGKDGRVEQYELTDDGDGKVSATLVREFKV-GSQPEGCVVDDETGRLYVGEEDVGIWRYD 235 (381)
T ss_dssp EEEEEEEE-T-TT--EEEEEEETTSEEEEEEEEE-TTSSEEEEEEEEEE--SS-EEEEEEETTTTEEEEEETTTEEEEEE
T ss_pred ceeeEEeecC-CCCcEEEEEecCCceEEEEEEEeCCCCcEeeEEEEEecC-CCcceEEEEecccCCEEEecCccEEEEEe
Confidence 4445424322 236668888889999988887521 2 34666765 45788899988877888888887677776
Q ss_pred cC
Q 021291 281 LD 282 (314)
Q Consensus 281 ~~ 282 (314)
.+
T Consensus 236 Ae 237 (381)
T PF02333_consen 236 AE 237 (381)
T ss_dssp SS
T ss_pred cC
Confidence 65
No 496
>PLN02193 nitrile-specifier protein
Probab=55.37 E-value=1.5e+02 Score=26.17 Aligned_cols=25 Identities=16% Similarity=0.053 Sum_probs=15.0
Q ss_pred CCCEEEEecCC-------CeEEEEeCCCCeEE
Q 021291 29 TKPILFAGTTG-------GELRIWDTVQHRTV 53 (314)
Q Consensus 29 ~~~~l~s~~~d-------g~v~iwd~~~~~~~ 53 (314)
++.+++.|+.+ ..+.+||+.+.+..
T Consensus 175 ~~~iyv~GG~~~~~~~~~~~v~~yD~~~~~W~ 206 (470)
T PLN02193 175 GNKIYSFGGEFTPNQPIDKHLYVFDLETRTWS 206 (470)
T ss_pred CCEEEEECCcCCCCCCeeCcEEEEECCCCEEE
Confidence 34556666643 24778888775543
No 497
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=55.23 E-value=1.5e+02 Score=26.34 Aligned_cols=37 Identities=16% Similarity=0.117 Sum_probs=29.5
Q ss_pred ceEEEEEeCCC---CeEEEecCCCcEEEEecCCCeeeEee
Q 021291 254 PVLCLSIDESC---NGGISGGADQKIVLYNLDHSTYVLFG 290 (314)
Q Consensus 254 ~v~~~~~~~~~---~~l~s~s~dg~i~iw~~~~~~~~~~~ 290 (314)
.+..++|+|+. ..|..-+.|..||+||+...+.+|..
T Consensus 167 tl~Qa~WHP~S~~D~hL~iL~sdnviRiy~lS~~telylq 206 (741)
T KOG4460|consen 167 TLKQAAWHPSSILDPHLVLLTSDNVIRIYSLSEPTELYLQ 206 (741)
T ss_pred eeeeccccCCccCCceEEEEecCcEEEEEecCCcchhhcc
Confidence 56778898875 45667778999999999999888753
No 498
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=52.50 E-value=1.3e+02 Score=24.48 Aligned_cols=78 Identities=15% Similarity=0.130 Sum_probs=46.3
Q ss_pred CCCceeEEEEccCCCEEEEec------CCCeEEEEeCCCCeEEEEEec-c--CCcccEEEEEEcccCCCCeEEEee-cC-
Q 021291 17 HRASVTDVCFHQTKPILFAGT------TGGELRIWDTVQHRTVSSSWV-H--SAAHGIVSVATGPSIGLNKVISQG-RD- 85 (314)
Q Consensus 17 h~~~v~~~~~~~~~~~l~s~~------~dg~v~iwd~~~~~~~~~~~~-~--~~~~~v~~~~~~~~~~~~~l~s~~-~d- 85 (314)
=.+.|+++.|..+.++++.|. ....+..||..+.... .+.. . .-+.+|..+.+...+..+..+.|. .+
T Consensus 35 i~G~V~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~~~~w~-~~~~~~s~~ipgpv~a~~~~~~d~~~~~~aG~~~~g 113 (281)
T PF12768_consen 35 ISGTVTDLQWASNNQLLVGGNFTLNGTNSSNLATYDFKNQTWS-SLGGGSSNSIPGPVTALTFISNDGSNFWVAGRSANG 113 (281)
T ss_pred ceEEEEEEEEecCCEEEEEEeeEECCCCceeEEEEecCCCeee-ecCCcccccCCCcEEEEEeeccCCceEEEeceecCC
Confidence 357899999987766777664 4567889998876443 2322 1 112458888876532333444443 23
Q ss_pred -CeEEEEeCCC
Q 021291 86 -GTVKCWDIEN 95 (314)
Q Consensus 86 -g~v~iwd~~~ 95 (314)
..|..||-..
T Consensus 114 ~~~l~~~dGs~ 124 (281)
T PF12768_consen 114 STFLMKYDGSS 124 (281)
T ss_pred CceEEEEcCCc
Confidence 3466666543
No 499
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=51.59 E-value=1.4e+02 Score=24.60 Aligned_cols=153 Identities=14% Similarity=0.158 Sum_probs=67.6
Q ss_pred ccEEEEEEcccCCCCeEEEeecCCeEEEEeCCCCCCCCCCeeeeecceeeEEEeeeeeccccccccCCCCcceeeccCCc
Q 021291 63 HGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGE 142 (314)
Q Consensus 63 ~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 142 (314)
..+..+..++ ++.++++++.-..+.-||.-.... .+...........
T Consensus 145 gs~~~~~r~~--dG~~vavs~~G~~~~s~~~G~~~w--~~~~r~~~~riq~----------------------------- 191 (302)
T PF14870_consen 145 GSINDITRSS--DGRYVAVSSRGNFYSSWDPGQTTW--QPHNRNSSRRIQS----------------------------- 191 (302)
T ss_dssp --EEEEEE-T--TS-EEEEETTSSEEEEE-TT-SS---EEEE--SSS-EEE-----------------------------
T ss_pred ceeEeEEECC--CCcEEEEECcccEEEEecCCCccc--eEEccCccceehh-----------------------------
Confidence 4488888888 988888877666667787653321 1111111111111
Q ss_pred eeeecCCCCCCceeccCCCceEEEeecCcCeEEEEecCCCceeeeecccccCCCCCcCCCCCc-eeeeEEEecCCCCCCc
Q 021291 143 TVDTDSLCDSKDDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRG-MCMAVQAYLPSKSQGF 221 (314)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~h~~~~~~-~~~~~~~~~p~~~~g~ 221 (314)
+.|.|++...++ + ..|.|++=+... ....+..+ .-.....+ .+..++ |.++ ++
T Consensus 192 -----------~gf~~~~~lw~~-~--~Gg~~~~s~~~~--~~~~w~~~------~~~~~~~~~~~ld~a-~~~~---~~ 245 (302)
T PF14870_consen 192 -----------MGFSPDGNLWML-A--RGGQIQFSDDPD--DGETWSEP------IIPIKTNGYGILDLA-YRPP---NE 245 (302)
T ss_dssp -----------EEE-TTS-EEEE-E--TTTEEEEEE-TT--EEEEE---------B-TTSS--S-EEEEE-ESSS---S-
T ss_pred -----------ceecCCCCEEEE-e--CCcEEEEccCCC--Cccccccc------cCCcccCceeeEEEE-ecCC---CC
Confidence 457888764443 2 357787776211 11222210 00000122 367777 9876 43
Q ss_pred eEEEEeecCCcEEEEEccCCCCceEeee---cCCcceEEEEEeCCCCeEEEecCCCcEEEE
Q 021291 222 VNVLAGYEDGSILVWDIRNPGIPLTAMK---VHLEPVLCLSIDESCNGGISGGADQKIVLY 279 (314)
Q Consensus 222 ~~l~~g~~dg~i~vwd~~~~~~~~~~~~---~h~~~v~~~~~~~~~~~l~s~s~dg~i~iw 279 (314)
..++| ..|.+. ...+. ++--+... .-...+..|.|.++.+-++ -+.+|.|.-|
T Consensus 246 -~wa~g-g~G~l~-~S~Dg-GktW~~~~~~~~~~~n~~~i~f~~~~~gf~-lG~~G~ll~~ 301 (302)
T PF14870_consen 246 -IWAVG-GSGTLL-VSTDG-GKTWQKDRVGENVPSNLYRIVFVNPDKGFV-LGQDGVLLRY 301 (302)
T ss_dssp -EEEEE-STT-EE-EESST-TSS-EE-GGGTTSSS---EEEEEETTEEEE-E-STTEEEEE
T ss_pred -EEEEe-CCccEE-EeCCC-CccceECccccCCCCceEEEEEcCCCceEE-ECCCcEEEEe
Confidence 44444 455543 45554 54443333 2244678888855544444 4578877655
No 500
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=51.25 E-value=1.2e+02 Score=23.94 Aligned_cols=31 Identities=16% Similarity=0.099 Sum_probs=21.9
Q ss_pred EEEEeCCCCeEEEecCCCcEEEEecCCCeeeEe
Q 021291 257 CLSIDESCNGGISGGADQKIVLYNLDHSTYVLF 289 (314)
Q Consensus 257 ~~~~~~~~~~l~s~s~dg~i~iw~~~~~~~~~~ 289 (314)
-+...|+|+.++.+..+ -.|||..+.+.+..
T Consensus 174 ~~~llPdG~lFi~an~~--s~i~d~~~n~v~~~ 204 (243)
T PF07250_consen 174 FVHLLPDGNLFIFANRG--SIIYDYKTNTVVRT 204 (243)
T ss_pred eEEEcCCCCEEEEEcCC--cEEEeCCCCeEEee
Confidence 34448999988888765 46678888866544
Done!