Query 021294
Match_columns 314
No_of_seqs 349 out of 2562
Neff 8.4
Searched_HMMs 46136
Date Fri Mar 29 09:07:10 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021294.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/021294hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0703 Predicted GTPase-activ 100.0 9.1E-46 2E-50 325.1 9.4 121 11-135 7-127 (287)
2 PF01412 ArfGap: Putative GTPa 100.0 3.1E-42 6.7E-47 271.9 8.3 114 18-133 2-115 (116)
3 smart00105 ArfGap Putative GTP 100.0 8.7E-41 1.9E-45 261.9 9.9 107 27-134 1-107 (112)
4 COG5347 GTPase-activating prot 100.0 1.3E-36 2.7E-41 275.2 11.3 119 15-134 6-125 (319)
5 PLN03119 putative ADP-ribosyla 100.0 3.2E-36 7E-41 282.1 10.0 124 10-137 4-127 (648)
6 PLN03131 hypothetical protein; 100.0 3.6E-36 7.8E-41 283.9 8.8 122 10-135 4-125 (705)
7 KOG0705 GTPase-activating prot 100.0 7.2E-32 1.6E-36 252.3 6.4 115 17-133 501-615 (749)
8 PLN03114 ADP-ribosylation fact 100.0 4.9E-31 1.1E-35 235.8 11.3 118 15-133 8-127 (395)
9 KOG0704 ADP-ribosylation facto 100.0 4.1E-31 8.8E-36 234.6 6.1 86 15-101 5-90 (386)
10 KOG0706 Predicted GTPase-activ 100.0 7.9E-31 1.7E-35 240.2 7.6 89 14-103 8-96 (454)
11 KOG0521 Putative GTPase activa 99.9 2.7E-27 5.8E-32 237.7 3.7 118 19-137 416-534 (785)
12 KOG0818 GTPase-activating prot 99.9 5.1E-24 1.1E-28 196.8 2.9 108 25-133 4-118 (669)
13 KOG1030 Predicted Ca2+-depende 99.9 1.1E-21 2.3E-26 160.1 9.9 100 202-301 2-102 (168)
14 KOG1117 Rho- and Arf-GTPase ac 99.9 1.1E-22 2.3E-27 197.9 4.0 120 16-137 285-406 (1186)
15 cd04016 C2_Tollip C2 domain pr 99.8 9.2E-18 2E-22 133.4 13.7 100 206-305 2-103 (121)
16 cd04038 C2_ArfGAP C2 domain pr 99.8 8.9E-18 1.9E-22 137.7 11.9 96 205-300 1-96 (145)
17 cd04039 C2_PSD C2 domain prese 99.8 1.1E-17 2.4E-22 130.5 11.6 94 206-299 1-101 (108)
18 cd08379 C2D_MCTP_PRT_plant C2 99.7 1.5E-17 3.3E-22 132.9 10.8 98 207-304 1-108 (126)
19 cd08677 C2A_Synaptotagmin-13 C 99.7 2.2E-17 4.8E-22 129.6 11.3 90 203-294 11-107 (118)
20 KOG0702 Predicted GTPase-activ 99.7 5.7E-18 1.2E-22 157.3 9.0 135 7-144 2-139 (524)
21 cd08682 C2_Rab11-FIP_classI C2 99.7 4.9E-17 1.1E-21 130.4 10.9 87 208-294 1-94 (126)
22 cd08395 C2C_Munc13 C2 domain t 99.7 1.1E-16 2.4E-21 126.9 11.7 98 207-304 1-109 (120)
23 cd08381 C2B_PI3K_class_II C2 d 99.7 1E-16 2.2E-21 127.9 11.3 93 205-297 12-113 (122)
24 cd08375 C2_Intersectin C2 doma 99.7 1.8E-16 3.8E-21 128.9 12.2 94 202-295 11-106 (136)
25 cd08394 C2A_Munc13 C2 domain f 99.7 3.1E-16 6.7E-21 124.4 12.0 90 205-298 1-90 (127)
26 cd08376 C2B_MCTP_PRT C2 domain 99.7 2.8E-16 6.1E-21 124.0 11.2 98 207-304 1-100 (116)
27 cd04042 C2A_MCTP_PRT C2 domain 99.7 4.7E-16 1E-20 123.8 11.8 98 208-305 2-101 (121)
28 cd08681 C2_fungal_Inn1p-like C 99.7 3.9E-16 8.4E-21 123.6 11.0 96 206-302 1-99 (118)
29 cd08688 C2_KIAA0528-like C2 do 99.7 4.9E-16 1.1E-20 121.6 11.0 88 208-295 1-94 (110)
30 cd04041 C2A_fungal C2 domain f 99.7 5.6E-16 1.2E-20 121.5 10.7 90 206-295 1-99 (111)
31 cd04028 C2B_RIM1alpha C2 domai 99.7 6.7E-16 1.5E-20 126.4 11.6 101 205-305 28-136 (146)
32 cd04025 C2B_RasA1_RasA4 C2 dom 99.7 1.3E-15 2.8E-20 121.6 12.8 99 207-305 1-101 (123)
33 cd04032 C2_Perforin C2 domain 99.7 7.9E-16 1.7E-20 123.2 11.4 91 204-294 26-118 (127)
34 cd04024 C2A_Synaptotagmin-like 99.7 1.2E-15 2.7E-20 122.3 12.3 90 206-295 1-94 (128)
35 cd08377 C2C_MCTP_PRT C2 domain 99.7 1.4E-15 3.1E-20 120.4 12.0 92 206-297 1-93 (119)
36 cd04029 C2A_SLP-4_5 C2 domain 99.7 1.2E-15 2.6E-20 122.2 11.5 98 203-300 12-119 (125)
37 cd08393 C2A_SLP-1_2 C2 domain 99.6 1.1E-15 2.3E-20 122.5 10.7 92 205-296 14-115 (125)
38 cd04044 C2A_Tricalbin-like C2 99.6 1.8E-15 4E-20 120.5 12.1 96 205-300 1-100 (124)
39 cd08401 C2A_RasA2_RasA3 C2 dom 99.6 2.1E-15 4.6E-20 120.1 11.9 96 208-303 2-100 (121)
40 cd08678 C2_C21orf25-like C2 do 99.6 1.6E-15 3.4E-20 121.7 11.2 94 208-302 1-96 (126)
41 cd04050 C2B_Synaptotagmin-like 99.6 1.7E-15 3.7E-20 117.5 11.0 88 207-297 1-90 (105)
42 cd04045 C2C_Tricalbin-like C2 99.6 2.4E-15 5.3E-20 119.6 12.0 101 206-307 1-103 (120)
43 cd08680 C2_Kibra C2 domain fou 99.6 1.9E-15 4.2E-20 120.6 11.3 94 204-297 12-115 (124)
44 cd04022 C2A_MCTP_PRT_plant C2 99.6 1.5E-15 3.3E-20 121.9 10.7 89 207-295 1-95 (127)
45 cd04054 C2A_Rasal1_RasA4 C2 do 99.6 3.4E-15 7.4E-20 118.9 12.6 99 208-306 2-102 (121)
46 cd04036 C2_cPLA2 C2 domain pre 99.6 1.5E-15 3.3E-20 120.4 10.5 95 208-303 2-101 (119)
47 cd04018 C2C_Ferlin C2 domain t 99.6 2.3E-15 5.1E-20 124.0 11.6 90 208-297 2-108 (151)
48 cd08385 C2A_Synaptotagmin-1-5- 99.6 2.3E-15 4.9E-20 120.3 11.1 97 204-300 14-117 (124)
49 cd08391 C2A_C2C_Synaptotagmin_ 99.6 2.8E-15 6E-20 119.0 11.5 100 206-307 1-108 (121)
50 cd08387 C2A_Synaptotagmin-8 C2 99.6 3E-15 6.4E-20 119.6 11.6 99 204-302 14-119 (124)
51 cd04049 C2_putative_Elicitor-r 99.6 3.6E-15 7.8E-20 119.1 12.0 98 206-303 1-104 (124)
52 cd08685 C2_RGS-like C2 domain 99.6 2.4E-15 5.3E-20 119.4 10.3 94 205-298 11-112 (119)
53 cd04019 C2C_MCTP_PRT_plant C2 99.6 4.9E-15 1.1E-19 122.3 12.3 90 207-296 1-93 (150)
54 cd08392 C2A_SLP-3 C2 domain fi 99.6 4.4E-15 9.6E-20 119.3 11.6 93 204-296 13-115 (128)
55 cd04046 C2_Calpain C2 domain p 99.6 7.9E-15 1.7E-19 117.6 12.8 89 206-295 3-92 (126)
56 cd04020 C2B_SLP_1-2-3-4 C2 dom 99.6 4.3E-15 9.3E-20 124.3 11.7 102 203-304 24-135 (162)
57 cd04010 C2B_RasA3 C2 domain se 99.6 4.5E-15 9.7E-20 122.1 10.6 88 208-296 2-110 (148)
58 cd08407 C2B_Synaptotagmin-13 C 99.6 3.2E-15 6.9E-20 121.4 9.4 89 204-292 13-112 (138)
59 cd04033 C2_NEDD4_NEDD4L C2 dom 99.6 8.4E-15 1.8E-19 118.4 11.3 92 207-298 1-100 (133)
60 cd04031 C2A_RIM1alpha C2 domai 99.6 8.5E-15 1.8E-19 117.0 11.1 90 204-293 14-113 (125)
61 cd08388 C2A_Synaptotagmin-4-11 99.6 9.2E-15 2E-19 117.6 11.2 92 205-296 15-115 (128)
62 cd04030 C2C_KIAA1228 C2 domain 99.6 1.1E-14 2.3E-19 116.7 11.5 96 204-299 14-120 (127)
63 cd08386 C2A_Synaptotagmin-7 C2 99.6 1.2E-14 2.7E-19 116.1 11.8 96 205-300 15-118 (125)
64 cd08382 C2_Smurf-like C2 domai 99.6 1.1E-14 2.5E-19 116.2 11.5 89 208-297 2-94 (123)
65 cd04015 C2_plant_PLD C2 domain 99.6 1.8E-14 4E-19 120.0 13.0 103 203-306 4-138 (158)
66 cd04009 C2B_Munc13-like C2 dom 99.6 9.5E-15 2.1E-19 118.3 10.8 93 204-296 14-119 (133)
67 cd08378 C2B_MCTP_PRT_plant C2 99.6 7.9E-15 1.7E-19 116.8 9.7 86 207-296 1-87 (121)
68 cd08400 C2_Ras_p21A1 C2 domain 99.6 2.6E-14 5.6E-19 114.6 12.4 98 204-304 2-101 (126)
69 cd08521 C2A_SLP C2 domain firs 99.6 1.7E-14 3.8E-19 114.8 11.3 95 204-298 12-116 (123)
70 cd08406 C2B_Synaptotagmin-12 C 99.6 6.4E-15 1.4E-19 119.6 8.9 89 205-293 14-111 (136)
71 cd08675 C2B_RasGAP C2 domain s 99.6 1.8E-14 3.9E-19 117.2 10.9 98 208-305 1-118 (137)
72 cd04014 C2_PKC_epsilon C2 doma 99.6 3E-14 6.5E-19 115.1 12.1 92 204-296 2-105 (132)
73 cd04027 C2B_Munc13 C2 domain s 99.6 2.6E-14 5.6E-19 114.8 11.6 88 207-294 2-101 (127)
74 cd04011 C2B_Ferlin C2 domain s 99.6 2.2E-14 4.8E-19 112.4 10.9 89 206-297 4-97 (111)
75 cd04037 C2E_Ferlin C2 domain f 99.6 2.8E-14 6.1E-19 114.1 11.5 88 207-294 1-92 (124)
76 cd08384 C2B_Rabphilin_Doc2 C2 99.6 1.4E-14 2.9E-19 117.2 9.8 91 202-292 9-108 (133)
77 cd08389 C2A_Synaptotagmin-14_1 99.6 1.9E-14 4.2E-19 115.0 10.5 96 204-300 14-117 (124)
78 cd08390 C2A_Synaptotagmin-15-1 99.6 3.3E-14 7.3E-19 113.2 11.2 97 204-300 12-116 (123)
79 cd08404 C2B_Synaptotagmin-4 C2 99.6 1.6E-14 3.5E-19 117.3 9.4 89 205-293 14-111 (136)
80 cd04051 C2_SRC2_like C2 domain 99.6 1.9E-14 4.2E-19 115.0 9.5 92 207-298 1-100 (125)
81 cd04040 C2D_Tricalbin-like C2 99.6 4.3E-14 9.3E-19 111.3 11.1 98 208-305 1-101 (115)
82 cd08402 C2B_Synaptotagmin-1 C2 99.6 1.8E-14 3.9E-19 117.0 9.2 91 203-293 12-111 (136)
83 cd04048 C2A_Copine C2 domain f 99.5 3.3E-14 7.2E-19 112.9 10.3 95 211-305 5-112 (120)
84 cd08692 C2B_Tac2-N C2 domain s 99.5 3.7E-14 8E-19 114.0 9.3 92 202-293 10-110 (135)
85 cd08690 C2_Freud-1 C2 domain f 99.5 1.2E-13 2.5E-18 114.1 12.2 98 209-306 5-120 (155)
86 cd04043 C2_Munc13_fungal C2 do 99.5 1.3E-13 2.8E-18 110.4 11.7 89 207-295 2-95 (126)
87 cd08373 C2A_Ferlin C2 domain f 99.5 1.2E-13 2.6E-18 110.8 11.2 90 212-302 2-94 (127)
88 KOG0696 Serine/threonine prote 99.5 1E-14 2.2E-19 134.2 5.2 91 206-296 180-278 (683)
89 cd08405 C2B_Synaptotagmin-7 C2 99.5 6.5E-14 1.4E-18 113.8 9.4 90 204-293 13-111 (136)
90 cd04026 C2_PKC_alpha_gamma C2 99.5 1.4E-13 3E-18 111.0 11.1 91 206-296 13-111 (131)
91 cd08676 C2A_Munc13-like C2 dom 99.5 1.3E-13 2.7E-18 113.9 11.0 89 203-295 25-144 (153)
92 cd08403 C2B_Synaptotagmin-3-5- 99.5 9.9E-14 2.1E-18 112.4 10.1 90 204-293 12-110 (134)
93 cd08408 C2B_Synaptotagmin-14_1 99.5 1E-13 2.2E-18 112.9 10.0 91 204-294 13-113 (138)
94 cd08410 C2B_Synaptotagmin-17 C 99.5 1.3E-13 2.8E-18 111.9 10.6 89 204-292 12-109 (135)
95 cd04017 C2D_Ferlin C2 domain f 99.5 2.3E-13 5E-18 110.4 11.8 83 207-289 2-95 (135)
96 cd08409 C2B_Synaptotagmin-15 C 99.5 8.2E-14 1.8E-18 113.3 9.2 92 205-296 14-113 (137)
97 cd08686 C2_ABR C2 domain in th 99.5 2.6E-13 5.7E-18 106.3 10.5 80 208-292 1-92 (118)
98 cd04021 C2_E3_ubiquitin_ligase 99.5 4.6E-13 9.9E-18 107.2 11.4 89 207-296 3-92 (125)
99 cd04035 C2A_Rabphilin_Doc2 C2 99.5 4.6E-13 1E-17 106.8 11.4 93 205-298 14-116 (123)
100 cd00276 C2B_Synaptotagmin C2 d 99.5 1.5E-13 3.3E-18 110.9 7.9 87 206-292 14-109 (134)
101 cd08691 C2_NEDL1-like C2 domai 99.4 9.3E-13 2E-17 106.9 11.4 89 207-297 2-108 (137)
102 cd04047 C2B_Copine C2 domain s 99.4 6.3E-13 1.4E-17 103.8 9.4 85 210-295 4-100 (110)
103 cd04013 C2_SynGAP_like C2 doma 99.4 4.1E-12 8.9E-17 103.9 12.2 102 202-307 7-113 (146)
104 cd00275 C2_PLC_like C2 domain 99.4 3.2E-12 7E-17 102.3 11.1 90 207-297 3-103 (128)
105 PLN03200 cellulose synthase-in 99.4 1.8E-12 4E-17 140.2 9.3 103 202-306 1976-2081(2102)
106 PLN03008 Phospholipase D delta 99.4 2.8E-12 6E-17 128.2 9.8 83 225-308 76-159 (868)
107 PF00168 C2: C2 domain; Inter 99.3 5.2E-12 1.1E-16 93.0 8.7 80 208-287 1-85 (85)
108 cd04052 C2B_Tricalbin-like C2 99.3 7.8E-12 1.7E-16 97.9 9.4 82 225-307 12-95 (111)
109 cd08383 C2A_RasGAP C2 domain ( 99.3 1.6E-11 3.4E-16 96.8 10.9 83 208-293 2-88 (117)
110 KOG1028 Ca2+-dependent phospho 99.3 1.2E-11 2.7E-16 118.1 11.0 95 204-298 165-266 (421)
111 smart00239 C2 Protein kinase C 99.3 8.5E-11 1.9E-15 88.6 11.4 92 208-299 2-98 (101)
112 cd08374 C2F_Ferlin C2 domain s 99.2 1.2E-10 2.7E-15 93.6 10.2 91 208-298 2-126 (133)
113 cd00030 C2 C2 domain. The C2 d 99.2 3.8E-10 8.2E-15 84.6 10.7 87 208-294 1-90 (102)
114 KOG1011 Neurotransmitter relea 99.1 7.7E-11 1.7E-15 113.2 6.3 97 199-295 288-396 (1283)
115 PLN02223 phosphoinositide phos 99.1 9.2E-10 2E-14 106.2 10.9 96 205-300 408-515 (537)
116 KOG1028 Ca2+-dependent phospho 99.1 7.3E-10 1.6E-14 106.0 9.8 90 203-292 295-393 (421)
117 COG5038 Ca2+-dependent lipid-b 99.0 1.5E-09 3.2E-14 110.8 7.9 99 199-297 1033-1134(1227)
118 PLN02952 phosphoinositide phos 98.9 8E-09 1.7E-13 101.7 10.9 95 206-300 470-577 (599)
119 COG5038 Ca2+-dependent lipid-b 98.9 5.7E-09 1.2E-13 106.7 10.0 98 201-298 431-532 (1227)
120 PLN02230 phosphoinositide phos 98.9 7.1E-09 1.5E-13 101.8 10.0 95 206-300 469-576 (598)
121 PLN02222 phosphoinositide phos 98.9 1.4E-08 3E-13 99.7 10.9 95 206-300 452-559 (581)
122 KOG2059 Ras GTPase-activating 98.9 3.9E-09 8.5E-14 102.7 6.5 96 206-302 5-102 (800)
123 KOG0169 Phosphoinositide-speci 98.8 7.5E-09 1.6E-13 102.0 7.8 95 207-301 617-723 (746)
124 KOG1031 Predicted Ca2+-depende 98.8 6.3E-09 1.4E-13 99.3 6.7 90 206-295 3-98 (1169)
125 KOG1264 Phospholipase C [Lipid 98.8 2.8E-08 6E-13 98.0 9.7 93 206-298 1065-1165(1267)
126 KOG1328 Synaptic vesicle prote 98.8 2.6E-09 5.7E-14 104.0 2.5 90 206-295 947-1049(1103)
127 PLN02228 Phosphoinositide phos 98.8 5E-08 1.1E-12 95.5 10.9 95 206-300 431-539 (567)
128 cd08689 C2_fungal_Pkc1p C2 dom 98.7 7E-08 1.5E-12 73.5 7.4 85 208-297 1-90 (109)
129 PLN02270 phospholipase D alpha 98.7 1.4E-07 3E-12 94.9 10.7 103 204-307 6-129 (808)
130 PLN02964 phosphatidylserine de 98.2 2.7E-06 5.9E-11 84.8 6.6 90 201-296 49-140 (644)
131 KOG1326 Membrane-associated pr 98.1 1.9E-06 4E-11 87.3 4.0 88 205-292 612-703 (1105)
132 KOG2059 Ras GTPase-activating 98.0 7.8E-06 1.7E-10 80.2 4.7 92 213-304 138-250 (800)
133 KOG0905 Phosphoinositide 3-kin 97.8 2.1E-05 4.6E-10 80.9 4.3 94 205-298 1523-1626(1639)
134 PLN02352 phospholipase D epsil 97.7 0.00015 3.2E-09 73.3 8.8 95 204-306 8-111 (758)
135 KOG1013 Synaptic vesicle prote 97.7 7.3E-05 1.6E-09 67.6 5.4 88 204-291 231-327 (362)
136 KOG1328 Synaptic vesicle prote 97.6 1.2E-05 2.7E-10 79.0 -0.0 90 208-297 116-274 (1103)
137 KOG1011 Neurotransmitter relea 97.5 0.0004 8.8E-09 67.9 7.8 93 206-298 1125-1228(1283)
138 cd08683 C2_C2cd3 C2 domain fou 97.4 0.00071 1.5E-08 53.5 7.1 79 225-303 32-140 (143)
139 KOG2060 Rab3 effector RIM1 and 97.4 9.3E-05 2E-09 68.0 2.3 108 200-307 263-379 (405)
140 KOG1326 Membrane-associated pr 97.3 5.3E-05 1.2E-09 77.0 0.0 89 206-294 206-305 (1105)
141 KOG1327 Copine [Signal transdu 97.1 0.0011 2.5E-08 64.1 6.9 84 211-295 141-236 (529)
142 cd08684 C2A_Tac2-N C2 domain f 96.9 0.0019 4E-08 47.7 5.0 86 209-296 2-95 (103)
143 KOG1013 Synaptic vesicle prote 96.9 0.00017 3.6E-09 65.4 -0.7 89 206-294 93-191 (362)
144 KOG3837 Uncharacterized conser 96.1 0.0043 9.4E-08 58.0 2.8 102 207-308 368-488 (523)
145 KOG1265 Phospholipase C [Lipid 95.9 0.015 3.3E-07 59.1 6.1 90 204-300 701-801 (1189)
146 cd08693 C2_PI3K_class_I_beta_d 94.8 0.28 6.1E-06 41.3 9.3 86 206-292 8-119 (173)
147 cd08398 C2_PI3K_class_I_alpha 94.7 0.33 7.1E-06 40.3 9.4 84 206-292 8-105 (158)
148 cd08380 C2_PI3K_like C2 domain 94.7 0.29 6.3E-06 40.3 9.1 86 207-292 9-106 (156)
149 KOG0521 Putative GTPase activa 94.4 0.005 1.1E-07 63.4 -2.5 75 26-102 627-702 (785)
150 cd08397 C2_PI3K_class_III C2 d 94.0 0.26 5.6E-06 40.9 7.5 68 226-293 30-107 (159)
151 PF15627 CEP76-C2: CEP76 C2 do 93.9 0.4 8.7E-06 39.5 8.1 92 206-297 9-119 (156)
152 PF12416 DUF3668: Cep120 prote 93.3 0.8 1.7E-05 42.8 10.1 84 208-293 2-94 (340)
153 KOG1327 Copine [Signal transdu 92.2 0.28 6.1E-06 48.0 5.6 59 239-297 43-106 (529)
154 cd04012 C2A_PI3K_class_II C2 d 91.2 1.1 2.5E-05 37.5 7.7 88 206-293 8-119 (171)
155 PF00792 PI3K_C2: Phosphoinosi 90.9 1.3 2.8E-05 35.9 7.6 54 240-293 23-85 (142)
156 cd08695 C2_Dock-B C2 domains f 90.9 3.7 8.1E-05 35.0 10.5 55 237-291 53-112 (189)
157 cd08399 C2_PI3K_class_I_gamma 89.6 3.3 7.1E-05 35.1 9.1 85 207-292 11-121 (178)
158 KOG1452 Predicted Rho GTPase-a 88.2 0.96 2.1E-05 41.3 5.1 81 201-282 46-130 (442)
159 cd08687 C2_PKN-like C2 domain 87.6 2.9 6.3E-05 31.3 6.5 64 226-294 9-73 (98)
160 cd08694 C2_Dock-A C2 domains f 87.4 4.9 0.00011 34.5 8.8 55 237-291 53-114 (196)
161 PF15625 CC2D2AN-C2: CC2D2A N- 85.5 5.6 0.00012 33.2 8.2 68 226-294 37-107 (168)
162 PF10358 NT-C2: N-terminal C2 85.4 8.1 0.00018 30.9 8.9 88 207-297 8-108 (143)
163 PRK12495 hypothetical protein; 85.3 0.32 6.9E-06 42.0 0.6 39 16-58 26-67 (226)
164 PF14429 DOCK-C2: C2 domain in 84.9 2.6 5.6E-05 35.7 6.0 55 238-292 60-120 (184)
165 PF00643 zf-B_box: B-box zinc 83.4 1.2 2.6E-05 27.8 2.5 33 29-61 3-36 (42)
166 smart00142 PI3K_C2 Phosphoinos 82.3 10 0.00022 28.6 7.7 68 208-275 13-91 (100)
167 PRK00085 recO DNA repair prote 82.0 0.99 2.2E-05 40.0 2.3 31 26-56 146-177 (247)
168 PF11781 RRN7: RNA polymerase 80.4 1.4 3E-05 26.9 1.9 27 27-56 6-32 (36)
169 PF01286 XPA_N: XPA protein N- 79.4 0.39 8.5E-06 28.9 -0.8 27 30-56 4-31 (34)
170 PF00320 GATA: GATA zinc finge 77.4 3.6 7.8E-05 24.9 3.1 32 32-63 1-34 (36)
171 TIGR00613 reco DNA repair prot 76.5 2 4.4E-05 37.8 2.6 33 26-58 144-177 (241)
172 PF08271 TF_Zn_Ribbon: TFIIB z 75.8 1.7 3.6E-05 27.5 1.3 25 31-56 2-26 (43)
173 cd08696 C2_Dock-C C2 domains f 74.5 13 0.00028 31.5 6.7 55 237-291 54-117 (179)
174 cd08679 C2_DOCK180_related C2 73.7 13 0.00029 31.2 6.7 53 239-292 55-115 (178)
175 PRK11019 hypothetical protein; 71.7 2.3 5E-05 31.5 1.4 37 28-65 35-73 (88)
176 KOG2419 Phosphatidylserine dec 71.0 0.24 5.2E-06 49.1 -5.0 78 200-278 274-358 (975)
177 cd08697 C2_Dock-D C2 domains f 70.0 20 0.00044 30.5 6.9 56 237-292 56-123 (185)
178 PF12760 Zn_Tnp_IS1595: Transp 65.8 5.6 0.00012 25.5 2.1 41 14-56 4-44 (46)
179 COG1381 RecO Recombinational D 63.8 4 8.7E-05 36.5 1.6 30 27-56 152-182 (251)
180 smart00401 ZnF_GATA zinc finge 63.8 7.2 0.00016 25.8 2.4 37 28-64 2-40 (52)
181 cd07171 NR_DBD_ER DNA-binding 62.7 5.9 0.00013 28.9 2.0 31 28-61 2-32 (82)
182 TIGR02419 C4_traR_proteo phage 61.7 4.8 0.0001 27.8 1.3 34 25-59 27-62 (63)
183 PF01258 zf-dskA_traR: Prokary 61.6 6.3 0.00014 23.8 1.7 30 30-59 4-34 (36)
184 COG1997 RPL43A Ribosomal prote 61.6 10 0.00023 27.9 3.0 40 16-57 21-61 (89)
185 cd06968 NR_DBD_ROR DNA-binding 57.4 8.3 0.00018 29.0 2.1 31 28-61 4-34 (95)
186 cd07173 NR_DBD_AR DNA-binding 55.8 9.9 0.00021 27.8 2.2 31 28-61 2-32 (82)
187 PF11618 DUF3250: Protein of u 55.2 24 0.00052 27.2 4.3 67 229-297 2-77 (107)
188 PF07162 B9-C2: Ciliary basal 54.7 1.2E+02 0.0027 25.1 10.2 79 208-291 4-102 (168)
189 cd07170 NR_DBD_ERR DNA-binding 53.8 9.5 0.00021 28.8 1.9 30 29-61 4-33 (97)
190 KOG3362 Predicted BBOX Zn-fing 50.4 5.9 0.00013 31.9 0.3 35 26-61 115-150 (156)
191 PHA00080 DksA-like zinc finger 49.3 13 0.00028 26.5 1.9 34 26-60 28-63 (72)
192 cd07160 NR_DBD_LXR DNA-binding 49.2 13 0.00028 28.4 1.9 31 28-61 17-47 (101)
193 PRK00420 hypothetical protein; 46.8 15 0.00032 28.6 2.0 46 10-58 2-49 (112)
194 PF10764 Gin: Inhibitor of sig 45.9 14 0.0003 23.8 1.4 26 31-57 1-26 (46)
195 cd07169 NR_DBD_GCNF_like DNA-b 45.9 15 0.00033 27.3 1.9 32 27-61 4-35 (90)
196 COG2174 RPL34A Ribosomal prote 45.8 17 0.00037 26.9 2.0 34 24-57 29-79 (93)
197 cd07162 NR_DBD_PXR DNA-binding 45.8 18 0.00039 26.7 2.2 28 31-61 1-28 (87)
198 cd07161 NR_DBD_EcR DNA-binding 45.3 18 0.00039 26.9 2.2 29 30-61 2-30 (91)
199 cd06966 NR_DBD_CAR DNA-binding 43.9 9.7 0.00021 28.6 0.6 29 30-61 1-29 (94)
200 cd07165 NR_DBD_DmE78_like DNA- 43.2 17 0.00036 26.4 1.7 27 32-61 1-27 (81)
201 PF14471 DUF4428: Domain of un 42.7 10 0.00022 25.0 0.5 30 31-61 1-32 (51)
202 PF07282 OrfB_Zn_ribbon: Putat 42.0 14 0.00031 25.5 1.2 27 28-56 27-53 (69)
203 PTZ00255 60S ribosomal protein 41.8 29 0.00062 25.9 2.7 40 15-56 21-61 (90)
204 cd07172 NR_DBD_GR_PR DNA-bindi 41.7 22 0.00047 25.6 2.1 29 30-61 3-31 (78)
205 KOG0694 Serine/threonine prote 41.0 7.2 0.00016 39.5 -0.7 64 225-289 27-91 (694)
206 cd07158 NR_DBD_Ppar_like The D 40.8 20 0.00043 25.4 1.8 27 32-61 1-27 (73)
207 cd06956 NR_DBD_RXR DNA-binding 40.7 26 0.00057 25.1 2.4 28 31-61 2-29 (77)
208 PRK00423 tfb transcription ini 40.6 19 0.0004 33.3 2.0 33 26-59 8-40 (310)
209 PRK13715 conjugal transfer pro 39.6 12 0.00026 26.7 0.5 33 29-61 34-67 (73)
210 cd07156 NR_DBD_VDR_like The DN 39.4 20 0.00044 25.3 1.6 27 32-61 1-27 (72)
211 PF12156 ATPase-cat_bd: Putati 39.1 33 0.00071 25.3 2.8 31 31-61 2-38 (88)
212 PF04770 ZF-HD_dimer: ZF-HD pr 37.7 9.2 0.0002 26.0 -0.3 28 34-62 24-52 (60)
213 PF13119 DUF3973: Domain of un 37.5 15 0.00032 22.7 0.6 13 50-62 2-14 (41)
214 cd03031 GRX_GRX_like Glutaredo 37.3 19 0.00042 29.4 1.4 41 13-62 83-123 (147)
215 COG1734 DksA DnaK suppressor p 37.0 15 0.00033 28.9 0.7 31 30-60 81-112 (120)
216 PRK11788 tetratricopeptide rep 36.8 23 0.00049 33.0 2.0 36 17-59 342-378 (389)
217 PF14803 Nudix_N_2: Nudix N-te 36.7 6.1 0.00013 23.7 -1.2 29 30-59 1-32 (34)
218 cd07179 2DBD_NR_DBD2 The secon 35.7 32 0.00068 24.5 2.1 27 32-61 1-27 (74)
219 TIGR02890 spore_yteA sporulati 35.6 19 0.00042 29.8 1.2 34 26-60 83-118 (159)
220 cd07168 NR_DBD_DHR4_like DNA-b 34.8 37 0.0008 25.2 2.5 31 28-61 5-35 (90)
221 cd07164 NR_DBD_PNR_like_1 DNA- 34.6 26 0.00056 25.2 1.6 27 32-61 1-27 (78)
222 cd07155 NR_DBD_ER_like DNA-bin 34.3 27 0.00059 24.8 1.6 27 32-61 1-27 (75)
223 cd06965 NR_DBD_Ppar DNA-bindin 34.0 20 0.00044 26.2 0.9 27 32-61 2-28 (84)
224 PF06689 zf-C4_ClpX: ClpX C4-t 33.9 51 0.0011 20.5 2.6 29 30-58 2-33 (41)
225 cd06963 NR_DBD_GR_like The DNA 33.9 32 0.00069 24.4 1.9 27 32-61 1-27 (73)
226 PF00105 zf-C4: Zinc finger, C 33.3 37 0.0008 23.6 2.2 27 30-59 1-27 (70)
227 cd06958 NR_DBD_COUP_TF DNA-bin 32.9 28 0.00061 24.7 1.5 27 32-61 1-27 (73)
228 cd00202 ZnF_GATA Zinc finger D 32.8 38 0.00083 22.5 2.0 34 31-64 1-36 (54)
229 KOG4217 Nuclear receptors of t 32.6 16 0.00034 35.4 0.2 30 27-59 267-296 (605)
230 PF01780 Ribosomal_L37ae: Ribo 32.6 23 0.00049 26.4 1.0 40 15-56 20-60 (90)
231 cd06959 NR_DBD_EcR_like The DN 31.9 35 0.00076 24.1 1.9 27 32-61 2-28 (73)
232 cd06955 NR_DBD_VDR DNA-binding 31.7 19 0.00041 27.8 0.4 30 29-61 6-35 (107)
233 cd06961 NR_DBD_TR DNA-binding 31.5 28 0.00061 25.5 1.4 27 32-61 2-28 (85)
234 smart00399 ZnF_C4 c4 zinc fing 31.4 25 0.00055 24.5 1.1 27 32-61 2-28 (70)
235 PRK10778 dksA RNA polymerase-b 31.3 54 0.0012 26.9 3.1 37 25-61 107-144 (151)
236 PF14376 Haem_bd: Haem-binding 31.2 53 0.0012 26.4 3.1 100 7-124 23-135 (137)
237 cd07166 NR_DBD_REV_ERB DNA-bin 31.2 24 0.00052 26.2 0.9 30 29-61 3-32 (89)
238 smart00782 PhnA_Zn_Ribbon PhnA 30.6 34 0.00073 22.2 1.4 31 27-57 5-44 (47)
239 smart00659 RPOLCX RNA polymera 30.6 22 0.00048 22.6 0.6 23 31-56 4-26 (44)
240 cd07163 NR_DBD_TLX DNA-binding 30.0 16 0.00035 27.3 -0.2 30 29-61 6-35 (92)
241 cd07157 2DBD_NR_DBD1 The first 29.7 16 0.00036 26.8 -0.2 28 31-61 2-29 (86)
242 KOG4846 Nuclear receptor [Sign 29.4 30 0.00066 33.0 1.5 31 27-60 130-160 (538)
243 COG2158 Uncharacterized protei 28.8 28 0.0006 26.6 0.9 23 41-63 52-76 (112)
244 TIGR01384 TFS_arch transcripti 28.7 40 0.00087 25.4 1.8 29 28-56 61-97 (104)
245 smart00290 ZnF_UBP Ubiquitin C 28.5 61 0.0013 20.6 2.5 22 31-52 1-22 (50)
246 cd07167 NR_DBD_Lrh-1_like The 27.6 43 0.00094 25.0 1.8 27 32-61 1-27 (93)
247 cd06960 NR_DBD_HNF4A DNA-bindi 27.4 26 0.00057 25.0 0.6 27 32-61 1-27 (76)
248 PRK00432 30S ribosomal protein 26.7 42 0.00091 22.0 1.4 25 28-55 19-43 (50)
249 cd06962 NR_DBD_FXR DNA-binding 26.3 22 0.00048 26.0 -0.0 28 31-61 3-30 (84)
250 PF14909 SPATA6: Spermatogenes 26.2 3.6E+02 0.0077 21.9 8.8 69 225-294 19-100 (140)
251 PF01060 DUF290: Transthyretin 26.0 1E+02 0.0022 22.0 3.5 28 264-291 11-38 (80)
252 KOG3507 DNA-directed RNA polym 25.7 27 0.00058 23.7 0.3 27 26-56 17-44 (62)
253 smart00834 CxxC_CXXC_SSSS Puta 25.6 19 0.00041 21.9 -0.4 27 31-57 7-34 (41)
254 cd06970 NR_DBD_PNR DNA-binding 24.8 25 0.00054 26.3 0.0 31 28-61 5-35 (92)
255 TIGR00598 rad14 DNA repair pro 24.7 14 0.0003 30.9 -1.4 28 32-59 1-29 (172)
256 PTZ00218 40S ribosomal protein 24.7 36 0.00079 22.7 0.8 29 27-57 14-42 (54)
257 PF08274 PhnA_Zn_Ribbon: PhnA 24.5 36 0.00078 19.8 0.7 23 31-56 4-26 (30)
258 KOG3408 U1-like Zn-finger-cont 24.4 25 0.00053 27.6 -0.0 40 46-85 54-102 (129)
259 PF06827 zf-FPG_IleRS: Zinc fi 24.3 22 0.00047 20.3 -0.3 28 30-57 2-29 (30)
260 PF13462 Thioredoxin_4: Thiore 24.1 48 0.001 26.5 1.6 28 36-63 8-35 (162)
261 cd06967 NR_DBD_TR2_like DNA-bi 23.7 23 0.00051 26.1 -0.3 29 29-60 3-31 (87)
262 KOG4215 Hepatocyte nuclear fac 22.8 46 0.001 31.3 1.3 31 27-60 17-47 (432)
263 PF03604 DNA_RNApol_7kD: DNA d 22.6 24 0.00053 20.8 -0.3 22 31-55 2-23 (32)
264 TIGR00100 hypA hydrogenase nic 21.7 41 0.00089 26.1 0.7 46 25-75 66-113 (115)
265 KOG1329 Phospholipase D1 [Lipi 21.6 72 0.0016 33.6 2.6 75 226-300 138-214 (887)
266 PF08792 A2L_zn_ribbon: A2L zi 21.4 54 0.0012 19.5 1.0 28 29-58 3-30 (33)
267 TIGR00280 L37a ribosomal prote 21.3 1E+02 0.0022 23.0 2.6 40 15-56 20-60 (91)
268 PF06677 Auto_anti-p27: Sjogre 21.0 50 0.0011 20.7 0.9 25 28-55 16-40 (41)
269 PTZ00074 60S ribosomal protein 20.7 71 0.0015 25.7 1.9 33 25-57 37-86 (135)
270 smart00440 ZnF_C2C2 C2C2 Zinc 20.5 72 0.0016 19.7 1.5 26 31-56 2-35 (40)
No 1
>KOG0703 consensus Predicted GTPase-activating protein [Signal transduction mechanisms]
Probab=100.00 E-value=9.1e-46 Score=325.11 Aligned_cols=121 Identities=51% Similarity=0.964 Sum_probs=115.5
Q ss_pred CCCCcHHHHHHHHHcCCCCCCCcCCCCCCCCeEEecccceechhhHHHHhhcCCceeEEEEeccCCCCHHHHHHHHHhcc
Q 021294 11 KNVSGPRARLENLLRQPGNRHCADCGSPDPKWVSLSTGVFICIKCSGIHRSLGVHISKVLSVKLDEWTNEQVDALAEMGG 90 (314)
Q Consensus 11 ~~~~~~~~~~~~l~~~~~N~~C~dC~~~~p~w~s~~~g~~~C~~C~~~Hr~lg~~~s~v~s~~~d~w~~~~v~~~~~~gG 90 (314)
...++.+++|++||+.|+|+.|||||+++|+|||.|+|||||++|+||||+||+|||+||||+||.|++|||+.|+.+ |
T Consensus 7 ~~~~~~~~~l~~Ll~~~~N~~CADC~a~~P~WaSwnlGvFiC~~C~giHR~lg~hiSkVkSv~LD~W~~eqv~~m~~~-G 85 (287)
T KOG0703|consen 7 GSNERNKRRLRELLREPDNKVCADCGAKGPRWASWNLGVFICLRCAGIHRSLGVHISKVKSVTLDEWTDEQVDFMISM-G 85 (287)
T ss_pred cccchHHHHHHHHHcCcccCcccccCCCCCCeEEeecCeEEEeecccccccccchhheeeeeeccccCHHHHHHHHHH-c
Confidence 556778999999999999999999999999999999999999999999999999999999999999999999999999 5
Q ss_pred hhHHHHHHhhhCCCCCCCCCCCCCHHHHHHHHhcccccceeeccc
Q 021294 91 NIAVNKKYEAYTPGNLKKPSPNSFIDERSDFIRRKYEKLEFFNFD 135 (314)
Q Consensus 91 N~~~n~~~e~~~~~~~~kp~~~~~~~~r~~fI~~KY~~~~f~~~~ 135 (314)
|.+||++||+++|..+.+|.+++ .+++|||+|||.++|+.++
T Consensus 86 N~~an~~~ea~~p~~~~~p~~d~---~~e~FIR~KYE~kkf~~~~ 127 (287)
T KOG0703|consen 86 NAKANSYYEAKLPDPFRRPGPDD---LVEQFIRDKYERKKFLDPE 127 (287)
T ss_pred chhhhhhccccCCccccCCChHH---HHHHHHHHHHhhhhhccch
Confidence 99999999999999999998876 8899999999999999865
No 2
>PF01412 ArfGap: Putative GTPase activating protein for Arf; InterPro: IPR001164 This entry describes a family of small GTPase activating proteins, for example ARF1-directed GTPase-activating protein, the cycle control GTPase activating protein (GAP) GCS1 which is important for the regulation of the ADP ribosylation factor ARF, a member of the Ras superfamily of GTP-binding proteins []. The GTP-bound form of ARF is essential for the maintenance of normal Golgi morphology, it participates in recruitment of coat proteins which are required for budding and fission of membranes. Before the fusion with an acceptor compartment the membrane must be uncoated. This step required the hydrolysis of GTP associated to ARF. These proteins contain a characteristic zinc finger motif (Cys-x2-Cys-x(16,17)-x2-Cys) which displays some similarity to the C4-type GATA zinc finger. The ARFGAP domain display no obvious similarity to other GAP proteins. The 3D structure of the ARFGAP domain of the PYK2-associated protein beta has been solved []. It consists of a three-stranded beta-sheet surrounded by 5 alpha helices. The domain is organised around a central zinc atom which is coordinated by 4 cysteines. The ARFGAP domain is clearly unrelated to the other GAP proteins structures which are exclusively helical. Classical GAP proteins accelerate GTPase activity by supplying an arginine finger to the active site. The crystal structure of ARFGAP bound to ARF revealed that the ARFGAP domain does not supply an arginine to the active site which suggests a more indirect role of the ARFGAP domain in the GTPase hydrolysis []. The Rev protein of human immunodeficiency virus type 1 (HIV-1) facilitates nuclear export of unspliced and partly-spliced viral RNAs []. Rev contains an RNA-binding domain and an effector domain; the latter is believed to interact with a cellular cofactor required for the Rev response and hence HIV-1 replication. Human Rev interacting protein (hRIP) specifically interacts with the Rev effector. The amino acid sequence of hRIP is characterised by an N-terminal, C-4 class zinc finger motif.; GO: 0008060 ARF GTPase activator activity, 0008270 zinc ion binding, 0032312 regulation of ARF GTPase activity; PDB: 2P57_A 2CRR_A 2OWA_B 3O47_B 3DWD_A 1DCQ_A 2CRW_A 3MDB_D 3FEH_A 3LJU_X ....
Probab=100.00 E-value=3.1e-42 Score=271.94 Aligned_cols=114 Identities=49% Similarity=0.979 Sum_probs=96.5
Q ss_pred HHHHHHHcCCCCCCCcCCCCCCCCeEEecccceechhhHHHHhhcCCceeEEEEeccCCCCHHHHHHHHHhcchhHHHHH
Q 021294 18 ARLENLLRQPGNRHCADCGSPDPKWVSLSTGVFICIKCSGIHRSLGVHISKVLSVKLDEWTNEQVDALAEMGGNIAVNKK 97 (314)
Q Consensus 18 ~~~~~l~~~~~N~~C~dC~~~~p~w~s~~~g~~~C~~C~~~Hr~lg~~~s~v~s~~~d~w~~~~v~~~~~~gGN~~~n~~ 97 (314)
++|++|++.|+|+.|||||+++|+|||++||||||+.|||+||+||+|||+||||+||+|+++||+.|+. |||..+|++
T Consensus 2 ~~l~~l~~~~~N~~CaDCg~~~p~w~s~~~GiflC~~Cag~HR~lg~~is~VkSi~~d~w~~~ev~~~~~-~GN~~~n~~ 80 (116)
T PF01412_consen 2 KILRELLKKPGNKVCADCGAPNPTWASLNYGIFLCLECAGIHRSLGVHISRVKSITMDNWSPEEVQRMRE-GGNKRANSI 80 (116)
T ss_dssp HHHHHHHCSTTCTB-TTT-SBS--EEETTTTEEE-HHHHHHHHHHTTTT--EEETTTS---HHHHHHHHH-SHHHHHHHH
T ss_pred HHHHHHHcCcCcCcCCCCCCCCCCEEEeecChhhhHHHHHHHHHhcccchhccccccCCCCHHHHHHHHH-HChHHHHHH
Confidence 6899999999999999999999999999999999999999999999999999999999999999999966 599999999
Q ss_pred HhhhCCCCCCCCCCCCCHHHHHHHHhcccccceeec
Q 021294 98 YEAYTPGNLKKPSPNSFIDERSDFIRRKYEKLEFFN 133 (314)
Q Consensus 98 ~e~~~~~~~~kp~~~~~~~~r~~fI~~KY~~~~f~~ 133 (314)
||++. +...+|.++++.+.+++||++||++++|+.
T Consensus 81 ~e~~~-~~~~~~~~~~~~~~~~~fI~~KY~~k~f~~ 115 (116)
T PF01412_consen 81 WEANS-PPPKKPPPSSDQEKREQFIRAKYVEKAFIS 115 (116)
T ss_dssp HTTTS-TTTTTHCTTSHHHHHHHHHHHHHTTHTTS-
T ss_pred HHcCC-CCCCCCCCCCcHHHHHHHHHHHHHhhhhcc
Confidence 99994 344678888889999999999999999985
No 3
>smart00105 ArfGap Putative GTP-ase activating proteins for the small GTPase, ARF. Putative zinc fingers with GTPase activating proteins (GAPs) towards the small GTPase, Arf. The GAP of ARD1 stimulates GTPase hydrolysis for ARD1 but not ARFs.
Probab=100.00 E-value=8.7e-41 Score=261.89 Aligned_cols=107 Identities=48% Similarity=0.860 Sum_probs=99.5
Q ss_pred CCCCCCcCCCCCCCCeEEecccceechhhHHHHhhcCCceeEEEEeccCCCCHHHHHHHHHhcchhHHHHHHhhhCCCCC
Q 021294 27 PGNRHCADCGSPDPKWVSLSTGVFICIKCSGIHRSLGVHISKVLSVKLDEWTNEQVDALAEMGGNIAVNKKYEAYTPGNL 106 (314)
Q Consensus 27 ~~N~~C~dC~~~~p~w~s~~~g~~~C~~C~~~Hr~lg~~~s~v~s~~~d~w~~~~v~~~~~~gGN~~~n~~~e~~~~~~~ 106 (314)
|+|+.|||||+++|+|||++||||||+.|+|+||.||+|||+||||+||+|++++|++|+ .|||.++|++||++++...
T Consensus 1 ~~N~~CaDC~~~~p~w~s~~~GifvC~~CsgiHR~lg~his~VkSl~md~w~~~~i~~~~-~~GN~~~n~~~e~~~~~~~ 79 (112)
T smart00105 1 PGNKKCFDCGAPNPTWASVNLGVFLCIECSGIHRSLGVHISKVRSLTLDTWTEEELRLLQ-KGGNENANSIWESNLDDFS 79 (112)
T ss_pred CCCCcccCCCCCCCCcEEeccceeEhHHhHHHHHhcCCCcCeeeecccCCCCHHHHHHHH-HhhhHHHHHHHHhhCCccc
Confidence 689999999999999999999999999999999999999999999999999999999996 5799999999999998775
Q ss_pred CCCCCCCCHHHHHHHHhcccccceeecc
Q 021294 107 KKPSPNSFIDERSDFIRRKYEKLEFFNF 134 (314)
Q Consensus 107 ~kp~~~~~~~~r~~fI~~KY~~~~f~~~ 134 (314)
.+|.+.+..+.|++||++||++++|+..
T Consensus 80 ~~~~~~~~~~~~~~fI~~KY~~k~f~~~ 107 (112)
T smart00105 80 LKPPDSDDQQKYESFIAAKYEEKLFVPP 107 (112)
T ss_pred cCCCCCchHHHHHHHHHHHHHhhhcccc
Confidence 5665566788999999999999999964
No 4
>COG5347 GTPase-activating protein that regulates ARFs (ADP-ribosylation factors), involved in ARF-mediated vesicular transport [Intracellular trafficking and secretion]
Probab=100.00 E-value=1.3e-36 Score=275.25 Aligned_cols=119 Identities=42% Similarity=0.772 Sum_probs=107.8
Q ss_pred cHHHHHHHHHcCCCCCCCcCCCCCCCCeEEecccceechhhHHHHhhcCCceeEEEEeccCCCCHHHHHHHHHhcchhHH
Q 021294 15 GPRARLENLLRQPGNRHCADCGSPDPKWVSLSTGVFICIKCSGIHRSLGVHISKVLSVKLDEWTNEQVDALAEMGGNIAV 94 (314)
Q Consensus 15 ~~~~~~~~l~~~~~N~~C~dC~~~~p~w~s~~~g~~~C~~C~~~Hr~lg~~~s~v~s~~~d~w~~~~v~~~~~~gGN~~~ 94 (314)
..++++..|...++|+.|||||++.|+|+|+|||||||++||||||+||+|||+||||+||+|+.+||+.|.. |||.+|
T Consensus 6 ~~~~~l~~l~~~~~Nk~CaDCga~~P~W~S~nlGvfiCi~CagvHRsLGvhiS~VKSitLD~wt~~~l~~m~~-gGN~~a 84 (319)
T COG5347 6 EDRKLLKLLKSDSSNKKCADCGAPNPTWASVNLGVFLCIDCAGVHRSLGVHISKVKSLTLDNWTEEELRRMEV-GGNSNA 84 (319)
T ss_pred HHHHHHHHHhhccccCccccCCCCCCceEecccCeEEEeecchhhhccccceeeeeeeecccCCHHHHHHHHH-hcchhh
Confidence 3577888888999999999999999999999999999999999999999999999999999999999999965 899999
Q ss_pred HHHHhhhCCCCC-CCCCCCCCHHHHHHHHhcccccceeecc
Q 021294 95 NKKYEAYTPGNL-KKPSPNSFIDERSDFIRRKYEKLEFFNF 134 (314)
Q Consensus 95 n~~~e~~~~~~~-~kp~~~~~~~~r~~fI~~KY~~~~f~~~ 134 (314)
|.+||.++-... .+.....+...+++||+.||+.++|...
T Consensus 85 ~~~~e~~~~~~~~~~~k~~yd~~v~~~y~~~ky~~~~~~~~ 125 (319)
T COG5347 85 NRFYEKNLLDQLLLPIKAKYDSSVAKKYIRKKYELKKFIDD 125 (319)
T ss_pred hhHhccCCCcccccccccccCHHHHHHHHHHHHHhhhcccc
Confidence 999999876532 3555667778899999999999999974
No 5
>PLN03119 putative ADP-ribosylation factor GTPase-activating protein AGD14; Provisional
Probab=100.00 E-value=3.2e-36 Score=282.13 Aligned_cols=124 Identities=27% Similarity=0.543 Sum_probs=110.4
Q ss_pred CCCCCcHHHHHHHHHcCCCCCCCcCCCCCCCCeEEecccceechhhHHHHhhcCCceeEEEEeccCCCCHHHHHHHHHhc
Q 021294 10 PKNVSGPRARLENLLRQPGNRHCADCGSPDPKWVSLSTGVFICIKCSGIHRSLGVHISKVLSVKLDEWTNEQVDALAEMG 89 (314)
Q Consensus 10 ~~~~~~~~~~~~~l~~~~~N~~C~dC~~~~p~w~s~~~g~~~C~~C~~~Hr~lg~~~s~v~s~~~d~w~~~~v~~~~~~g 89 (314)
.++.++.+++|++|++.|+|+.|||||+.+|+|||+|||||||+.|+||||.|| | |||||+||+|+++||++|+. |
T Consensus 4 KR~qERnekILreLlklPgNk~CADCgs~~P~WASiNlGIFICi~CSGIHRsLG-h--RVKSLSLDkWT~EEVe~Mk~-g 79 (648)
T PLN03119 4 KREEERNEKIIRGLMKLPPNRRCINCNSLGPQYVCTTFWTFVCMACSGIHREFT-H--RVKSVSMSKFTSKEVEVLQN-G 79 (648)
T ss_pred hHHHHHHHHHHHHHhhCcCCCccccCCCCCCCceeeccceEEeccchhhhccCC-c--eeeccccCCCCHHHHHHHHH-h
Confidence 467788999999999999999999999999999999999999999999999998 3 99999999999999999965 6
Q ss_pred chhHHHHHHhhhCCCCCCCCCCCCCHHHHHHHHhcccccceeeccccc
Q 021294 90 GNIAVNKKYEAYTPGNLKKPSPNSFIDERSDFIRRKYEKLEFFNFDEQ 137 (314)
Q Consensus 90 GN~~~n~~~e~~~~~~~~kp~~~~~~~~r~~fI~~KY~~~~f~~~~~~ 137 (314)
||.+||++||++|+....++.+..+.+.+++|||+||++|+|+.....
T Consensus 80 GN~~AN~iyeanw~~~~~~~P~~sD~e~lr~FIR~KYVeKRF~~~~~~ 127 (648)
T PLN03119 80 GNQRAREIYLKNWDHQRQRLPENSNAERVREFIKNVYVQKKYAGANDA 127 (648)
T ss_pred chHHHHHHHHhhcccccCCCCCCccHHHHHHHHHHHHhhhhccCcCCC
Confidence 999999999999987644444455567778999999999999975433
No 6
>PLN03131 hypothetical protein; Provisional
Probab=100.00 E-value=3.6e-36 Score=283.94 Aligned_cols=122 Identities=30% Similarity=0.539 Sum_probs=109.2
Q ss_pred CCCCCcHHHHHHHHHcCCCCCCCcCCCCCCCCeEEecccceechhhHHHHhhcCCceeEEEEeccCCCCHHHHHHHHHhc
Q 021294 10 PKNVSGPRARLENLLRQPGNRHCADCGSPDPKWVSLSTGVFICIKCSGIHRSLGVHISKVLSVKLDEWTNEQVDALAEMG 89 (314)
Q Consensus 10 ~~~~~~~~~~~~~l~~~~~N~~C~dC~~~~p~w~s~~~g~~~C~~C~~~Hr~lg~~~s~v~s~~~d~w~~~~v~~~~~~g 89 (314)
.+++++.+++|++|++.|+|+.|||||+++|+|||+|||||||+.|+||||.|| | |||||+||+|+++||+.|+ .|
T Consensus 4 kkqqErnekiLreLlk~PgNk~CADCga~~P~WASiNlGIFICi~CSGIHRsLg-h--RVKSVTLD~WtdeEV~~Mk-~g 79 (705)
T PLN03131 4 RKEEERNEKIIRGLMKLPPNRRCINCNSLGPQFVCTNFWTFICMTCSGIHREFT-H--RVKSVSMSKFTSQDVEALQ-NG 79 (705)
T ss_pred hHHHHHHHHHHHHHhhCcCCCccccCCCCCCCeeEeccceEEchhchhhhcccC-c--ccccccCCCCCHHHHHHHH-Hh
Confidence 467788899999999999999999999999999999999999999999999997 3 9999999999999999996 57
Q ss_pred chhHHHHHHhhhCCCCCCCCCCCCCHHHHHHHHhcccccceeeccc
Q 021294 90 GNIAVNKKYEAYTPGNLKKPSPNSFIDERSDFIRRKYEKLEFFNFD 135 (314)
Q Consensus 90 GN~~~n~~~e~~~~~~~~kp~~~~~~~~r~~fI~~KY~~~~f~~~~ 135 (314)
||.+||++||++|+....++.+++..+.+++|||+||++|+|+...
T Consensus 80 GN~~AN~iyeanwd~~r~~lP~~sd~ekrr~FIR~KYVeKRFa~~~ 125 (705)
T PLN03131 80 GNQRAREIYLKDWDQQRQRLPDNSKVDKIREFIKDIYVDKKYAGGK 125 (705)
T ss_pred ccHHHHHHHHhhcccccCCCCCCccHHHHHHHHHHHHhhhhhhcCC
Confidence 9999999999999865334444556677899999999999999743
No 7
>KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms]
Probab=99.97 E-value=7.2e-32 Score=252.30 Aligned_cols=115 Identities=43% Similarity=0.872 Sum_probs=108.7
Q ss_pred HHHHHHHHcCCCCCCCcCCCCCCCCeEEecccceechhhHHHHhhcCCceeEEEEeccCCCCHHHHHHHHHhcchhHHHH
Q 021294 17 RARLENLLRQPGNRHCADCGSPDPKWVSLSTGVFICIKCSGIHRSLGVHISKVLSVKLDEWTNEQVDALAEMGGNIAVNK 96 (314)
Q Consensus 17 ~~~~~~l~~~~~N~~C~dC~~~~p~w~s~~~g~~~C~~C~~~Hr~lg~~~s~v~s~~~d~w~~~~v~~~~~~gGN~~~n~ 96 (314)
.-.|+.|...+||..|+||++++|.|||+|+|+++|++|+||||.||+|+|||+||.||.|..|-+..|..+ ||+.||+
T Consensus 501 a~a~qairn~rgn~~c~dc~~~n~~wAslnlg~l~cieCsgihr~lgt~lSrvr~LeLDdWPvEl~~Vm~ai-GN~~AN~ 579 (749)
T KOG0705|consen 501 AMALQAIRNMRGNSHCVDCGTPNPKWASLNLGVLMCIECSGIHRNLGTHLSRVRSLELDDWPVELLKVMSAI-GNDLANS 579 (749)
T ss_pred HHHHHHHhcCcCCceeeecCCCCcccccccCCeEEEEEchhhhhhhhhhhhhhhccccccCcHHHHHHHHHh-hhhHHHH
Confidence 345778889999999999999999999999999999999999999999999999999999999999999888 8999999
Q ss_pred HHhhhCCCCCCCCCCCCCHHHHHHHHhcccccceeec
Q 021294 97 KYEAYTPGNLKKPSPNSFIDERSDFIRRKYEKLEFFN 133 (314)
Q Consensus 97 ~~e~~~~~~~~kp~~~~~~~~r~~fI~~KY~~~~f~~ 133 (314)
+||..+ .+..||.|+++.++++.||++||++|.|..
T Consensus 580 vWE~~~-~G~~KPs~~s~REEkErwIr~KYeqklFLa 615 (749)
T KOG0705|consen 580 VWEGSS-QGQTKPSPDSSREEKERWIRAKYEQKLFLA 615 (749)
T ss_pred Hhhhhc-cCCcCCCccccHHHHHHHHHHHHHHHhhcC
Confidence 999955 556899999999999999999999999996
No 8
>PLN03114 ADP-ribosylation factor GTPase-activating protein AGD10; Provisional
Probab=99.97 E-value=4.9e-31 Score=235.75 Aligned_cols=118 Identities=32% Similarity=0.548 Sum_probs=100.6
Q ss_pred cHHHHHHHHHcCCCCCCCcCCCCCCCCeEEecccceechhhHHHHhhcCCceeEEEEeccCCCCHHHHHHHHHhcchhHH
Q 021294 15 GPRARLENLLRQPGNRHCADCGSPDPKWVSLSTGVFICIKCSGIHRSLGVHISKVLSVKLDEWTNEQVDALAEMGGNIAV 94 (314)
Q Consensus 15 ~~~~~~~~l~~~~~N~~C~dC~~~~p~w~s~~~g~~~C~~C~~~Hr~lg~~~s~v~s~~~d~w~~~~v~~~~~~gGN~~~ 94 (314)
...++|++|+..|+|+.|+|||+++|+|+|+|||||||+.|+|+||.||+|||+|+|++||.|++++|+.| +.|||.++
T Consensus 8 d~~~vfrkL~~kPgNk~CaDCga~nPtWASvn~GIFLCl~CSGVHRsLGvHISfVRSltLD~Ws~eqL~~M-k~GGN~rA 86 (395)
T PLN03114 8 DKISVFKKLKAKSDNKICFDCNAKNPTWASVTYGIFLCIDCSAVHRSLGVHISFVRSTNLDSWSSEQLKMM-IYGGNNRA 86 (395)
T ss_pred cHHHHHHHHHhCcCCCcCccCCCCCCCceeeccceeehhhhhHhhccCCCCCceeecccCCCCCHHHHHHH-HHhcCHHH
Confidence 35678999999999999999999999999999999999999999999999999999999999999999999 56899999
Q ss_pred HHHHhhhCCCCCCCCCC--CCCHHHHHHHHhcccccceeec
Q 021294 95 NKKYEAYTPGNLKKPSP--NSFIDERSDFIRRKYEKLEFFN 133 (314)
Q Consensus 95 n~~~e~~~~~~~~kp~~--~~~~~~r~~fI~~KY~~~~f~~ 133 (314)
|.+|+.+.-.....+.. ++....++.-+.+|++.+.+..
T Consensus 87 ~~fF~qhG~~~~~~~~~KY~S~aA~~Yre~L~keVa~~~a~ 127 (395)
T PLN03114 87 QVFFKQYGWSDGGKTEAKYTSRAADLYKQILAKEVAKSKAE 127 (395)
T ss_pred HHHHHHcCCCCCCCcccccCCHHHHHHHHHHHHHHHHhhhc
Confidence 99998764322112212 3445566777999999998874
No 9
>KOG0704 consensus ADP-ribosylation factor GTPase activator [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]
Probab=99.97 E-value=4.1e-31 Score=234.56 Aligned_cols=86 Identities=44% Similarity=0.860 Sum_probs=80.9
Q ss_pred cHHHHHHHHHcCCCCCCCcCCCCCCCCeEEecccceechhhHHHHhhcCCceeEEEEeccCCCCHHHHHHHHHhcchhHH
Q 021294 15 GPRARLENLLRQPGNRHCADCGSPDPKWVSLSTGVFICIKCSGIHRSLGVHISKVLSVKLDEWTNEQVDALAEMGGNIAV 94 (314)
Q Consensus 15 ~~~~~~~~l~~~~~N~~C~dC~~~~p~w~s~~~g~~~C~~C~~~Hr~lg~~~s~v~s~~~d~w~~~~v~~~~~~gGN~~~ 94 (314)
++++.|++|....+|+.|+||++++|+|||++||||||++|||+||.||+|||+|||||||+|.+.||+.| +.|||.++
T Consensus 5 rtrr~L~~lkp~deNk~CfeC~a~NPQWvSvsyGIfICLECSG~HRgLGVhiSFVRSVTMD~wkeiel~kM-eaGGN~~~ 83 (386)
T KOG0704|consen 5 RTRRVLLELKPQDENKKCFECGAPNPQWVSVSYGIFICLECSGKHRGLGVHISFVRSVTMDKWKEIELKKM-EAGGNERF 83 (386)
T ss_pred HHHHHHHhcCccccCCceeecCCCCCCeEeecccEEEEEecCCcccccceeeEEEEeeecccccHHHHHHH-HhccchhH
Confidence 46778888877789999999999999999999999999999999999999999999999999999999999 56999999
Q ss_pred HHHHhhh
Q 021294 95 NKKYEAY 101 (314)
Q Consensus 95 n~~~e~~ 101 (314)
+.+++..
T Consensus 84 ~eFL~s~ 90 (386)
T KOG0704|consen 84 REFLSSQ 90 (386)
T ss_pred HHHHhhC
Confidence 9999865
No 10
>KOG0706 consensus Predicted GTPase-activating protein [Signal transduction mechanisms]
Probab=99.97 E-value=7.9e-31 Score=240.16 Aligned_cols=89 Identities=38% Similarity=0.776 Sum_probs=84.0
Q ss_pred CcHHHHHHHHHcCCCCCCCcCCCCCCCCeEEecccceechhhHHHHhhcCCceeEEEEeccCCCCHHHHHHHHHhcchhH
Q 021294 14 SGPRARLENLLRQPGNRHCADCGSPDPKWVSLSTGVFICIKCSGIHRSLGVHISKVLSVKLDEWTNEQVDALAEMGGNIA 93 (314)
Q Consensus 14 ~~~~~~~~~l~~~~~N~~C~dC~~~~p~w~s~~~g~~~C~~C~~~Hr~lg~~~s~v~s~~~d~w~~~~v~~~~~~gGN~~ 93 (314)
...+..++.|+.++.|+.|||||+++|+|+|++||||||++||++||+||+||++|||.+||.|+.+|++.| .+|||.+
T Consensus 8 ~d~~~vfkkLRs~~~NKvCFDCgAknPtWaSVTYGIFLCiDCSAvHRnLGVHiSFVRSTnLDsWs~~qLR~M-~~GGN~n 86 (454)
T KOG0706|consen 8 QDIQTVFKKLRSQSENKVCFDCGAKNPTWASVTYGIFLCIDCSAVHRNLGVHISFVRSTNLDSWSWEQLRRM-QVGGNAN 86 (454)
T ss_pred hhHHHHHHHHhcCCCCceecccCCCCCCceeecceEEEEEecchhhhccccceEEEeecccccCCHHHHhHh-hhcCchh
Confidence 346888999999999999999999999999999999999999999999999999999999999999999999 6899999
Q ss_pred HHHHHhhhCC
Q 021294 94 VNKKYEAYTP 103 (314)
Q Consensus 94 ~n~~~e~~~~ 103 (314)
|+.++..+--
T Consensus 87 A~~FFkqhg~ 96 (454)
T KOG0706|consen 87 ARVFFKQHGC 96 (454)
T ss_pred HHHHHHHcCC
Confidence 9999988743
No 11
>KOG0521 consensus Putative GTPase activating proteins (GAPs) [Signal transduction mechanisms]
Probab=99.93 E-value=2.7e-27 Score=237.70 Aligned_cols=118 Identities=44% Similarity=0.816 Sum_probs=109.8
Q ss_pred HHHHHHcCCCCCCCcCCCCCCCCeEEecccceechhhHHHHhhcCCceeEEEEeccCCCCHHHHHHHHHhcchhHHHHHH
Q 021294 19 RLENLLRQPGNRHCADCGSPDPKWVSLSTGVFICIKCSGIHRSLGVHISKVLSVKLDEWTNEQVDALAEMGGNIAVNKKY 98 (314)
Q Consensus 19 ~~~~l~~~~~N~~C~dC~~~~p~w~s~~~g~~~C~~C~~~Hr~lg~~~s~v~s~~~d~w~~~~v~~~~~~gGN~~~n~~~ 98 (314)
.+..+...|||..|||||+++|+|+|+|+||.+||+|+|+||+||+|||+|+|++||.|.++.+.+|..+ ||..+|.+|
T Consensus 416 ~~~~vq~~pgN~~c~Dcg~p~ptw~S~NLgv~~CIecSGvhRslGvh~SkvrsLtLD~~~~~l~~l~~~l-gn~~~N~i~ 494 (785)
T KOG0521|consen 416 VIEEVQSVPGNAQCCDCGAPEPTWASINLGVLLCIECSGVHRSLGVHISKVRSLTLDVWEPELLLLFKNL-GNKYVNEIY 494 (785)
T ss_pred hhhhhhcCCchhhhhhcCCCCCchHhhhhchhhHhhccccccccCchhhhhhhhhhhccCcHHHHHHHHh-Ccchhhhhh
Confidence 4677889999999999999999999999999999999999999999999999999999999999999776 899999999
Q ss_pred hhhCCCC-CCCCCCCCCHHHHHHHHhcccccceeeccccc
Q 021294 99 EAYTPGN-LKKPSPNSFIDERSDFIRRKYEKLEFFNFDEQ 137 (314)
Q Consensus 99 e~~~~~~-~~kp~~~~~~~~r~~fI~~KY~~~~f~~~~~~ 137 (314)
|+.+++. ..+|.+..++..|+.||++||++++|....++
T Consensus 495 e~~l~~~~~~~~~~~~~~~~r~~~i~~kyve~~F~~k~~~ 534 (785)
T KOG0521|consen 495 EALLPSYDSSKPTASSSRQAREAWIKAKYVERRFSVKEPQ 534 (785)
T ss_pred hcccccccccCCCCccchhhhhHhhhcccceeeEeecccc
Confidence 9999854 67999988899999999999999999975444
No 12
>KOG0818 consensus GTPase-activating proteins of the GIT family [Signal transduction mechanisms]
Probab=99.88 E-value=5.1e-24 Score=196.83 Aligned_cols=108 Identities=33% Similarity=0.719 Sum_probs=97.8
Q ss_pred cCCCCCCCcCCCCCCCCeEEecccceechhhHHHHhhcCCceeEEEEeccCCCCHHHHHHHHHhcchhHHHHHHhhhCCC
Q 021294 25 RQPGNRHCADCGSPDPKWVSLSTGVFICIKCSGIHRSLGVHISKVLSVKLDEWTNEQVDALAEMGGNIAVNKKYEAYTPG 104 (314)
Q Consensus 25 ~~~~N~~C~dC~~~~p~w~s~~~g~~~C~~C~~~Hr~lg~~~s~v~s~~~d~w~~~~v~~~~~~gGN~~~n~~~e~~~~~ 104 (314)
+...-+.|+|||+++|.|||++-|+|+|.+|..+||+||.|||.||+|.-..|.++.|+++..+ .|..+|.|||..+-+
T Consensus 4 ~~l~~evC~DC~~~dp~WASvnrGt~lC~eCcsvHrsLGrhIS~vrhLR~s~W~pt~l~~V~tL-n~~gaNsIWEh~Lld 82 (669)
T KOG0818|consen 4 RLLSSEVCADCSGPDPSWASVNRGTFLCDECCSVHRSLGRHISQVRHLRHTPWPPTLLQMVETL-NNNGANSIWEHSLLD 82 (669)
T ss_pred cchhhhhhcccCCCCCcceeecCceEehHhhhHHHhhhcchHHHHHHhccCCCCHHHHHHHHHH-HhcCcchhhhhhccC
Confidence 3456789999999999999999999999999999999999999999999999999999887666 788899999998754
Q ss_pred ------CCCCCCCCCCHH-HHHHHHhcccccceeec
Q 021294 105 ------NLKKPSPNSFID-ERSDFIRRKYEKLEFFN 133 (314)
Q Consensus 105 ------~~~kp~~~~~~~-~r~~fI~~KY~~~~f~~ 133 (314)
+++||+|.+... .+.+||++||+...|+.
T Consensus 83 ~st~~sg~rk~~pqD~~Hp~K~eFIkaKy~~LtFv~ 118 (669)
T KOG0818|consen 83 PATIMSGRRKANPQDKVHPNKAEFIRAKYQMLAFVH 118 (669)
T ss_pred chhhhcccCCCCCcCCCCccHHHHHHHHHHheeeec
Confidence 467899987766 88999999999999995
No 13
>KOG1030 consensus Predicted Ca2+-dependent phospholipid-binding protein [General function prediction only]
Probab=99.86 E-value=1.1e-21 Score=160.08 Aligned_cols=100 Identities=53% Similarity=0.898 Sum_probs=94.7
Q ss_pred eeeeeEEEEEEEeeecCCCCCC-CCCCcEEEEEECCeEeeeeeecCCCCCcccceeEEEecCCCCcEEEEEEEcCCCCCC
Q 021294 202 VEFVGLIKVNVVKGTNLAVRDV-MTSDPYVILALGHQTVKTRVIKSNLNPVWNESLMLSIPENIPPLKVLVYDKDTFTTD 280 (314)
Q Consensus 202 ~e~~g~L~V~v~~a~~L~~~d~-~~~dPyv~v~l~~~~~kT~~~~~tlnP~w~e~~~f~v~~~~~~L~i~v~d~d~~~~d 280 (314)
.++.|.|.|.|.+|.+|..+|+ +.+||||++.+++|+.+|+++.+++||+|||.|.|.+.+...+|+++|||+|.++.|
T Consensus 2 ~~~vGLL~v~v~~g~~L~~rD~~~sSDPyVVl~lg~q~lkT~~v~~n~NPeWNe~ltf~v~d~~~~lkv~VyD~D~fs~d 81 (168)
T KOG1030|consen 2 EMLVGLLRVRVKRGKNLAIRDFLGSSDPYVVLELGNQKLKTRVVYKNLNPEWNEELTFTVKDPNTPLKVTVYDKDTFSSD 81 (168)
T ss_pred CccceEEEEEEEeecCeeeeccccCCCCeEEEEECCeeeeeeeecCCCCCcccceEEEEecCCCceEEEEEEeCCCCCcc
Confidence 5788999999999999999999 599999999999999999999999999999999999999899999999999999999
Q ss_pred ceeEEEEEeCccccccccccC
Q 021294 281 DFMGDAEIDIQPLVTAARACE 301 (314)
Q Consensus 281 d~iG~~~v~l~~l~~~~~~~~ 301 (314)
|+||++.++|.+++.+.....
T Consensus 82 D~mG~A~I~l~p~~~~~~~~~ 102 (168)
T KOG1030|consen 82 DFMGEATIPLKPLLEAQKMDY 102 (168)
T ss_pred cccceeeeccHHHHHHhhhhc
Confidence 999999999999998766553
No 14
>KOG1117 consensus Rho- and Arf-GTPase activating protein ARAP3 [Signal transduction mechanisms; Cytoskeleton]
Probab=99.86 E-value=1.1e-22 Score=197.86 Aligned_cols=120 Identities=37% Similarity=0.633 Sum_probs=112.2
Q ss_pred HHHHHHHHHcCCCCCCCcCCCCCCCCeEEecccceechhhHHHHhhcCCceeEEEEeccCC--CCHHHHHHHHHhcchhH
Q 021294 16 PRARLENLLRQPGNRHCADCGSPDPKWVSLSTGVFICIKCSGIHRSLGVHISKVLSVKLDE--WTNEQVDALAEMGGNIA 93 (314)
Q Consensus 16 ~~~~~~~l~~~~~N~~C~dC~~~~p~w~s~~~g~~~C~~C~~~Hr~lg~~~s~v~s~~~d~--w~~~~v~~~~~~gGN~~ 93 (314)
..+...+++....|+.|+|||++.|.|||+|+++.||-.|+|-||+||.-+|+|+|++||. |+.+-|+++..+ ||.+
T Consensus 285 d~evaeriW~ne~nr~cadC~ssrPdwasiNL~vvIck~caGqhrslgs~dSkvrslkmd~svwsneliElfivl-gn~~ 363 (1186)
T KOG1117|consen 285 DYEVAERIWLNEENRECADCGSSRPDWASINLCVVICKPCAGQHRSLGSGDSKVRSLKMDPSVWSNELIELFIVL-GNPR 363 (1186)
T ss_pred hHHHHHHHHhccccccccccCCCCCcccccccceEEcccCCCccccCCCccccccccccCcccccchhhhhheee-cCcc
Confidence 3556678899999999999999999999999999999999999999999999999999995 999999999877 8999
Q ss_pred HHHHHhhhCCCCCCCCCCCCCHHHHHHHHhcccccceeeccccc
Q 021294 94 VNKKYEAYTPGNLKKPSPNSFIDERSDFIRRKYEKLEFFNFDEQ 137 (314)
Q Consensus 94 ~n~~~e~~~~~~~~kp~~~~~~~~r~~fI~~KY~~~~f~~~~~~ 137 (314)
+|.+|.+++|++ ..-+|+++...|++||.+||.+.+|.++.+.
T Consensus 364 an~Fwa~nl~~~-e~lh~dssp~~r~~fi~~Kykeg~fRk~~~~ 406 (1186)
T KOG1117|consen 364 ANRFWAGNLPPN-EHLHPDSSPSTRRQFIKEKYKEGKFRKEHPV 406 (1186)
T ss_pred cccccccCCCCc-cccCCCCCcchhhhHHHHHhhcccccccccc
Confidence 999999999987 6789999999999999999999999987776
No 15
>cd04016 C2_Tollip C2 domain present in Toll-interacting protein (Tollip). Tollip is a part of the Interleukin-1 receptor (IL-1R) signaling pathway. Tollip is proposed to link serine/threonine kinase IRAK to IL-1Rs as well as inhibiting phosphorylation of IRAK. There is a single C2 domain present in Tollip. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice varian
Probab=99.77 E-value=9.2e-18 Score=133.35 Aligned_cols=100 Identities=21% Similarity=0.403 Sum_probs=86.0
Q ss_pred eEEEEEEEeeecCCCCCCCCCCcEEEEEECCeEeeeeeecC-CCCCcccceeEEEecCCCCcEEEEEEEcCCCCCCceeE
Q 021294 206 GLIKVNVVKGTNLAVRDVMTSDPYVILALGHQTVKTRVIKS-NLNPVWNESLMLSIPENIPPLKVLVYDKDTFTTDDFMG 284 (314)
Q Consensus 206 g~L~V~v~~a~~L~~~d~~~~dPyv~v~l~~~~~kT~~~~~-tlnP~w~e~~~f~v~~~~~~L~i~v~d~d~~~~dd~iG 284 (314)
|.|.|+|++|++++..+++.+||||++.++.++.+|+++.+ +.||+|||+|.|.+......|.|+|||++.+++|++||
T Consensus 2 g~L~v~v~~Ak~l~~~~~g~sDPYv~i~lg~~~~kT~v~~~~~~nP~WNe~F~f~v~~~~~~l~~~V~d~d~~~~dd~iG 81 (121)
T cd04016 2 GRLSITVVQAKLVKNYGLTRMDPYCRIRVGHAVYETPTAYNGAKNPRWNKTIQCTLPEGVDSIYIEIFDERAFTMDERIA 81 (121)
T ss_pred cEEEEEEEEccCCCcCCCCCCCceEEEEECCEEEEeEEccCCCCCCccCeEEEEEecCCCcEEEEEEEeCCCCcCCceEE
Confidence 78999999999988777559999999999999999999876 79999999999999765678999999999999999999
Q ss_pred EEEEeCc-cccccccccCcccc
Q 021294 285 DAEIDIQ-PLVTAARACETPIS 305 (314)
Q Consensus 285 ~~~v~l~-~l~~~~~~~~~~~~ 305 (314)
.+.++|. .+..+.....|..+
T Consensus 82 ~~~i~l~~~~~~g~~~~~W~~L 103 (121)
T cd04016 82 WTHITIPESVFNGETLDDWYSL 103 (121)
T ss_pred EEEEECchhccCCCCccccEeC
Confidence 9999996 46555444444433
No 16
>cd04038 C2_ArfGAP C2 domain present in Arf GTPase Activating Proteins (GAP). ArfGAP is a GTPase activating protein which regulates the ADP ribosylation factor Arf, a member of the Ras superfamily of GTP-binding proteins. The GTP-bound form of Arf is involved in Golgi morphology and is involved in recruiting coat proteins. ArfGAP is responsible for the GDP-bound form of Arf which is necessary for uncoating the membrane and allowing the Golgi to fuse with an acceptor compartment. These proteins contain an N-terminal ArfGAP domain containing the characteristic zinc finger motif (Cys-x2-Cys-x(16,17)-x2-Cys) and C-terminal C2 domain. C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances i
Probab=99.75 E-value=8.9e-18 Score=137.71 Aligned_cols=96 Identities=67% Similarity=1.069 Sum_probs=88.6
Q ss_pred eeEEEEEEEeeecCCCCCCCCCCcEEEEEECCeEeeeeeecCCCCCcccceeEEEecCCCCcEEEEEEEcCCCCCCceeE
Q 021294 205 VGLIKVNVVKGTNLAVRDVMTSDPYVILALGHQTVKTRVIKSNLNPVWNESLMLSIPENIPPLKVLVYDKDTFTTDDFMG 284 (314)
Q Consensus 205 ~g~L~V~v~~a~~L~~~d~~~~dPyv~v~l~~~~~kT~~~~~tlnP~w~e~~~f~v~~~~~~L~i~v~d~d~~~~dd~iG 284 (314)
.|.|.|+|++|++|+..+...+||||++.++++..+|+++++++||.|||.|.|.+......|.|+|||++.++.|++||
T Consensus 1 ~G~L~V~Vi~a~nL~~~d~~~sDPYV~v~~g~~~~kT~vvk~t~nP~WnE~f~f~i~~~~~~l~~~V~D~d~~~~dd~iG 80 (145)
T cd04038 1 LGLLKVRVVRGTNLAVRDFTSSDPYVVLTLGNQKVKTRVIKKNLNPVWNEELTLSVPNPMAPLKLEVFDKDTFSKDDSMG 80 (145)
T ss_pred CeEEEEEEEeeECCCCCCCCCcCcEEEEEECCEEEEeeeEcCCCCCeecccEEEEecCCCCEEEEEEEECCCCCCCCEEE
Confidence 37899999999999988877899999999999999999999999999999999999877788999999999999999999
Q ss_pred EEEEeCcccccccccc
Q 021294 285 DAEIDIQPLVTAARAC 300 (314)
Q Consensus 285 ~~~v~l~~l~~~~~~~ 300 (314)
++.++|.++.......
T Consensus 81 ~a~i~l~~l~~~~~~~ 96 (145)
T cd04038 81 EAEIDLEPLVEAAKLD 96 (145)
T ss_pred EEEEEHHHhhhhhhhh
Confidence 9999999998765544
No 17
>cd04039 C2_PSD C2 domain present in Phosphatidylserine decarboxylase (PSD). PSD is involved in the biosynthesis of aminophospholipid by converting phosphatidylserine (PtdSer) to phosphatidylethanolamine (PtdEtn). There is a single C2 domain present and it is thought to confer PtdSer binding motif that is common to PKC and synaptotagmin. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM
Probab=99.75 E-value=1.1e-17 Score=130.47 Aligned_cols=94 Identities=29% Similarity=0.506 Sum_probs=83.6
Q ss_pred eEEEEEEEeeecCCCCCCC-----CCCcEEEEEECCeEeeeeeecCCCCCcccceeEEEecC--CCCcEEEEEEEcCCCC
Q 021294 206 GLIKVNVVKGTNLAVRDVM-----TSDPYVILALGHQTVKTRVIKSNLNPVWNESLMLSIPE--NIPPLKVLVYDKDTFT 278 (314)
Q Consensus 206 g~L~V~v~~a~~L~~~d~~-----~~dPyv~v~l~~~~~kT~~~~~tlnP~w~e~~~f~v~~--~~~~L~i~v~d~d~~~ 278 (314)
|+|.|+|++|++|+..+.. .+||||++.++.+..+|+++++++||+|||.|.|.+.. ....|.|+|||++..+
T Consensus 1 g~l~v~v~~A~~L~~~~~~~~~~~~~DPYv~v~~~~~~~kT~v~~~t~nPvWne~f~f~v~~~~~~~~L~~~V~D~d~~~ 80 (108)
T cd04039 1 GVVFMEIKSITDLPPLKNMTRTGFDMDPFVIISFGRRVFRTSWRRHTLNPVFNERLAFEVYPHEKNFDIQFKVLDKDKFS 80 (108)
T ss_pred CEEEEEEEeeeCCCCccccCCCCCccCceEEEEECCEeEeeeeecCCCCCcccceEEEEEeCccCCCEEEEEEEECCCCC
Confidence 6899999999999987632 47999999999999999999999999999999999854 3347999999999999
Q ss_pred CCceeEEEEEeCccccccccc
Q 021294 279 TDDFMGDAEIDIQPLVTAARA 299 (314)
Q Consensus 279 ~dd~iG~~~v~l~~l~~~~~~ 299 (314)
.|++||++.++|.+|..+...
T Consensus 81 ~dd~IG~~~l~L~~l~~~~~~ 101 (108)
T cd04039 81 FNDYVATGSLSVQELLNAAPQ 101 (108)
T ss_pred CCcceEEEEEEHHHHHhhCCC
Confidence 999999999999999876654
No 18
>cd08379 C2D_MCTP_PRT_plant C2 domain fourth repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate
Probab=99.74 E-value=1.5e-17 Score=132.93 Aligned_cols=98 Identities=22% Similarity=0.400 Sum_probs=85.9
Q ss_pred EEEEEEEeeec---CCCCCCC-CCCcEEEEEECCeEeeeeeecCCCCCcccceeEEEecCCCCcEEEEEEEcCCCC----
Q 021294 207 LIKVNVVKGTN---LAVRDVM-TSDPYVILALGHQTVKTRVIKSNLNPVWNESLMLSIPENIPPLKVLVYDKDTFT---- 278 (314)
Q Consensus 207 ~L~V~v~~a~~---L~~~d~~-~~dPyv~v~l~~~~~kT~~~~~tlnP~w~e~~~f~v~~~~~~L~i~v~d~d~~~---- 278 (314)
+|.|+|++|++ |+..+.. .+||||++.++.++.+|+++++++||+|||+|.|.+......|.|+|||++.++
T Consensus 1 ~L~v~v~~A~~~~~l~~~d~~g~sDPYv~i~~g~~~~rTk~~~~~~nP~WnE~f~f~v~~~~~~l~v~V~d~d~~~~~~~ 80 (126)
T cd08379 1 ILEVGILGAQGLDVLRAKDGRGSTDAYCVAKYGPKWVRTRTVEDSSNPRWNEQYTWPVYDPCTVLTVGVFDNSQSHWKEA 80 (126)
T ss_pred CeEEEEEEeECCccccccccCCCCCeeEEEEECCEEeEcCcccCCCCCcceeEEEEEecCCCCEEEEEEEECCCcccccc
Confidence 48999999999 7777766 899999999999999999999999999999999999776678999999998874
Q ss_pred --CCceeEEEEEeCccccccccccCccc
Q 021294 279 --TDDFMGDAEIDIQPLVTAARACETPI 304 (314)
Q Consensus 279 --~dd~iG~~~v~l~~l~~~~~~~~~~~ 304 (314)
.|++||++.++|..+..+.....+..
T Consensus 81 ~~~dd~lG~~~i~l~~l~~~~~~~~~~~ 108 (126)
T cd08379 81 VQPDVLIGKVRIRLSTLEDDRVYAHSYP 108 (126)
T ss_pred CCCCceEEEEEEEHHHccCCCEEeeEEE
Confidence 89999999999999987665444433
No 19
>cd08677 C2A_Synaptotagmin-13 C2 domain. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domain
Probab=99.74 E-value=2.2e-17 Score=129.62 Aligned_cols=90 Identities=18% Similarity=0.324 Sum_probs=78.7
Q ss_pred eeeeEEEEEEEeeecCCCCCCCCCCcEEEEEECC----eEeeeeeecCCCCCcccceeEEEecC---CCCcEEEEEEEcC
Q 021294 203 EFVGLIKVNVVKGTNLAVRDVMTSDPYVILALGH----QTVKTRVIKSNLNPVWNESLMLSIPE---NIPPLKVLVYDKD 275 (314)
Q Consensus 203 e~~g~L~V~v~~a~~L~~~d~~~~dPyv~v~l~~----~~~kT~~~~~tlnP~w~e~~~f~v~~---~~~~L~i~v~d~d 275 (314)
...+.|+|+|++|++|+ . ...+||||++.+.. .+.+|+++++|+||.|||.|.|.++. ....|.|+|||+|
T Consensus 11 ~~~~~L~V~vikA~~L~-~-~g~sDPYVKv~L~~~~k~~k~kT~v~rktlnPvfnE~f~F~v~~~~l~~~tL~~~V~d~D 88 (118)
T cd08677 11 KQKAELHVNILEAENIS-V-DAGCECYISGCVSVSEGQKEAQTALKKLALHTQWEEELVFPLPEEESLDGTLTLTLRCCD 88 (118)
T ss_pred CcCCEEEEEEEEecCCC-C-CCCCCeEEEEEEcCCcCccEEEcceecCCCCCccccEEEEeCCHHHhCCcEEEEEEEeCC
Confidence 45689999999999998 2 23689999999943 56799999999999999999999875 3467999999999
Q ss_pred CCCCCceeEEEEEeCcccc
Q 021294 276 TFTTDDFMGDAEIDIQPLV 294 (314)
Q Consensus 276 ~~~~dd~iG~~~v~l~~l~ 294 (314)
.++++++||++.+++.++.
T Consensus 89 rfs~~d~IG~v~l~l~~~~ 107 (118)
T cd08677 89 RFSRHSTLGELRLKLADVS 107 (118)
T ss_pred CCCCCceEEEEEEcccccc
Confidence 9999999999999999863
No 20
>KOG0702 consensus Predicted GTPase-activating protein [Signal transduction mechanisms]
Probab=99.74 E-value=5.7e-18 Score=157.29 Aligned_cols=135 Identities=23% Similarity=0.417 Sum_probs=112.6
Q ss_pred CCCCCCCCcH-HHHHHHHHcCCCCCCCcCCCCCCC-CeEEecccceechhhHHHHhhcCCceeEEEEeccCCCCHHHHHH
Q 021294 7 NSDPKNVSGP-RARLENLLRQPGNRHCADCGSPDP-KWVSLSTGVFICIKCSGIHRSLGVHISKVLSVKLDEWTNEQVDA 84 (314)
Q Consensus 7 ~~~~~~~~~~-~~~~~~l~~~~~N~~C~dC~~~~p-~w~s~~~g~~~C~~C~~~Hr~lg~~~s~v~s~~~d~w~~~~v~~ 84 (314)
++..++++.. +++||.|++.|+|++|++|....+ +|+.++.|-|||..|+|.-|.|.. -+|||||+|.+++..||..
T Consensus 2 a~~~ke~E~~~ek~iR~l~kLP~NrrC~nCnsl~~~t~~~~~~g~fv~~~~sg~ls~l~~-ahRvksiSmttft~qevs~ 80 (524)
T KOG0702|consen 2 AGYKKEDEYDYEKEIRRLLKLPENRRCINCNSLVAATYVVYTVGSFVCTMCSGLLSGLNP-AHRVKSISMTTFTDQEVSF 80 (524)
T ss_pred CcccccchhHHHHHHHHHhcCCCCCceeeccccccceEEEeeccceeeeccchhhccCCC-ccccceeeeeeccccchHH
Confidence 3455677776 999999999999999999999988 999999999999999999998853 4699999999999999999
Q ss_pred HHHhcchhHHHHHHhhhCCCCCCCCCCC-CCHHHHHHHHhcccccceeeccccccccCCCC
Q 021294 85 LAEMGGNIAVNKKYEAYTPGNLKKPSPN-SFIDERSDFIRRKYEKLEFFNFDEQALLCPYP 144 (314)
Q Consensus 85 ~~~~gGN~~~n~~~e~~~~~~~~kp~~~-~~~~~r~~fI~~KY~~~~f~~~~~~~~~~~~~ 144 (314)
|+. +||..+.++|-...... +---|+ .+.+.-++|||.||+.++|+.+..+.+...+.
T Consensus 81 lQs-hgNq~~k~i~fkl~D~q-~S~vPD~rn~~~~kef~q~~y~~kr~~v~~n~~k~~s~t 139 (524)
T KOG0702|consen 81 LQS-HGNQVCKEIWFKLFDFQ-RSNVPDSRNPQKVKEFQQEKYVKKRYYVPKNQMKIPSYT 139 (524)
T ss_pred Hhh-cchhhhhhhhhcchhhh-hccCCCcccchhhHHHHhhhhccceeecCcccccccccc
Confidence 977 59999999998765433 223333 33455589999999999999988886665554
No 21
>cd08682 C2_Rab11-FIP_classI C2 domain found in Rab11-family interacting proteins (FIP) class I. Rab GTPases recruit various effector proteins to organelles and vesicles. Rab11-family interacting proteins (FIPs) are involved in mediating the role of Rab11. FIPs can be divided into three classes: class I FIPs (Rip11a, Rip11b, RCP, and FIP2) which contain a C2 domain after N-terminus of the protein, class II FIPs (FIP3 and FIP4) which contain two EF-hands and a proline rich region, and class III FIPs (FIP1) which exhibits no homology to known protein domains. All FIP proteins contain a highly conserved, 20-amino acid motif at the C-terminus of the protein, known as Rab11/25 binding domain (RBD). Class I FIPs are thought to bind to endocytic membranes via their C2 domain, which interacts directly with phospholipids. Class II FIPs do not have any membrane binding domains leaving much to speculate about the mechanism involving FIP3 and FIP4 interactions with endocytic membranes. The member
Probab=99.72 E-value=4.9e-17 Score=130.41 Aligned_cols=87 Identities=29% Similarity=0.556 Sum_probs=80.2
Q ss_pred EEEEEEeeecCCCCCCC-CCCcEEEEEECCeEeeeeeecCCCCCcccceeEEEecC------CCCcEEEEEEEcCCCCCC
Q 021294 208 IKVNVVKGTNLAVRDVM-TSDPYVILALGHQTVKTRVIKSNLNPVWNESLMLSIPE------NIPPLKVLVYDKDTFTTD 280 (314)
Q Consensus 208 L~V~v~~a~~L~~~d~~-~~dPyv~v~l~~~~~kT~~~~~tlnP~w~e~~~f~v~~------~~~~L~i~v~d~d~~~~d 280 (314)
+.|+|++|++|+..+.. .+||||++.++.++.+|+++++++||+|||.|.|.+.. ....|.|+|||++.+++|
T Consensus 1 ~~V~V~~A~~L~~~d~~g~~dpYv~v~l~~~~~kT~v~~~t~nP~Wne~f~F~v~~~~~~~~~~~~l~~~v~d~~~~~~d 80 (126)
T cd08682 1 VQVTVLQARGLLCKGKSGTNDAYVIIQLGKEKYSTSVKEKTTSPVWKEECSFELPGLLSGNGNRATLQLTVMHRNLLGLD 80 (126)
T ss_pred CEEEEEECcCCcCCCCCcCCCceEEEEECCeeeeeeeecCCCCCEeCceEEEEecCcccCCCcCCEEEEEEEEccccCCC
Confidence 57999999999988766 89999999999999999999999999999999999865 356799999999999999
Q ss_pred ceeEEEEEeCcccc
Q 021294 281 DFMGDAEIDIQPLV 294 (314)
Q Consensus 281 d~iG~~~v~l~~l~ 294 (314)
++||++.++|.++.
T Consensus 81 ~~iG~~~i~l~~l~ 94 (126)
T cd08682 81 KFLGQVSIPLNDLD 94 (126)
T ss_pred ceeEEEEEEHHHhh
Confidence 99999999999987
No 22
>cd08395 C2C_Munc13 C2 domain third repeat in Munc13 (mammalian uncoordinated) proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi
Probab=99.71 E-value=1.1e-16 Score=126.94 Aligned_cols=98 Identities=19% Similarity=0.267 Sum_probs=82.3
Q ss_pred EEEEEEEeeecCCCCCCCCCCcEEEEEE-C----C--eEeeeeeecCCCCCcccceeEEEecCC----CCcEEEEEEEcC
Q 021294 207 LIKVNVVKGTNLAVRDVMTSDPYVILAL-G----H--QTVKTRVIKSNLNPVWNESLMLSIPEN----IPPLKVLVYDKD 275 (314)
Q Consensus 207 ~L~V~v~~a~~L~~~d~~~~dPyv~v~l-~----~--~~~kT~~~~~tlnP~w~e~~~f~v~~~----~~~L~i~v~d~d 275 (314)
.|+|+|++|++|+..+.+.+||||+|++ | . ++++|+++++++||+|||.|.|.+... ...|.|.|||++
T Consensus 1 kL~V~Vi~A~~L~~~d~g~~DPYVkV~l~g~~~~~k~~k~kTkv~~~tlnPvwNE~f~F~v~~~~~~~~~~L~~~V~D~d 80 (120)
T cd08395 1 KVTVKVVAANDLKWQTTGMFRPFVEVNLIGPHLSDKKRKFATKSKNNNWSPKYNETFQFILGNEDDPESYELHICVKDYC 80 (120)
T ss_pred CEEEEEEECcCCCcccCCCCCCEEEEEEecCCCcccccEeeeEEecCCCCCccCcEEEEEeeCcCCCceeEEEEEEEEec
Confidence 3889999999999887668999999998 3 2 357899999999999999999999742 245899999999
Q ss_pred CCCCCceeEEEEEeCccccccccccCccc
Q 021294 276 TFTTDDFMGDAEIDIQPLVTAARACETPI 304 (314)
Q Consensus 276 ~~~~dd~iG~~~v~l~~l~~~~~~~~~~~ 304 (314)
..+.+++||++.++|.++..+.....|..
T Consensus 81 ~~~~dd~IG~~~l~l~~~~~~~~~~~w~~ 109 (120)
T cd08395 81 FARDDRLVGVTVLQLRDIAQAGSCACWLP 109 (120)
T ss_pred ccCCCCEEEEEEEEHHHCcCCCcEEEEEE
Confidence 88889999999999999987665444433
No 23
>cd08381 C2B_PI3K_class_II C2 domain second repeat present in class II phosphatidylinositol 3-kinases (PI3Ks). There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permut
Probab=99.71 E-value=1e-16 Score=127.91 Aligned_cols=93 Identities=30% Similarity=0.444 Sum_probs=81.7
Q ss_pred eeEEEEEEEeeecCCCCCCCCCCcEEEEEEC-----CeEeeeeeecCCCCCcccceeEEEe-cC---CCCcEEEEEEEcC
Q 021294 205 VGLIKVNVVKGTNLAVRDVMTSDPYVILALG-----HQTVKTRVIKSNLNPVWNESLMLSI-PE---NIPPLKVLVYDKD 275 (314)
Q Consensus 205 ~g~L~V~v~~a~~L~~~d~~~~dPyv~v~l~-----~~~~kT~~~~~tlnP~w~e~~~f~v-~~---~~~~L~i~v~d~d 275 (314)
.+.|.|.|++|++|+..+...+||||++.+. ..+.+|+++++++||.|||+|.|.+ +. ....|.|+|||++
T Consensus 12 ~~~L~V~Vi~A~~L~~~~~~~~DpyVkv~l~~~~~~~~~~kT~v~~~~~nP~wnE~F~f~~~~~~~l~~~~L~~~V~d~d 91 (122)
T cd08381 12 NGTLFVMVMHAKNLPLLDGSDPDPYVKTYLLPDPQKTTKRKTKVVRKTRNPTFNEMLVYDGLPVEDLQQRVLQVSVWSHD 91 (122)
T ss_pred CCEEEEEEEEeeCCCCCCCCCCCCEEEEEEeeCCccCCceeCCccCCCCCCCcccEEEEecCChHHhCCCEEEEEEEeCC
Confidence 4789999999999999883389999999995 3568999999999999999999987 32 4568999999999
Q ss_pred CCCCCceeEEEEEeCccccccc
Q 021294 276 TFTTDDFMGDAEIDIQPLVTAA 297 (314)
Q Consensus 276 ~~~~dd~iG~~~v~l~~l~~~~ 297 (314)
.++++++||++.++|.++....
T Consensus 92 ~~~~~~~lG~~~i~l~~l~~~~ 113 (122)
T cd08381 92 SLVENEFLGGVCIPLKKLDLSQ 113 (122)
T ss_pred CCcCCcEEEEEEEeccccccCC
Confidence 9999999999999999987554
No 24
>cd08375 C2_Intersectin C2 domain present in Intersectin. A single instance of the C2 domain is located C terminally in the intersectin protein. Intersectin functions as a scaffolding protein, providing a link between the actin cytoskeleton and the components of endocytosis and plays a role in signal transduction. In addition to C2, intersectin contains several additional domains including: Eps15 homology domains, SH3 domains, a RhoGEF domain, and a PH domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking pro
Probab=99.70 E-value=1.8e-16 Score=128.87 Aligned_cols=94 Identities=33% Similarity=0.623 Sum_probs=85.9
Q ss_pred eeeeeEEEEEEEeeecCCCCCCC-CCCcEEEEEECCeEeeeeeecCCCCCcccceeEEEecC-CCCcEEEEEEEcCCCCC
Q 021294 202 VEFVGLIKVNVVKGTNLAVRDVM-TSDPYVILALGHQTVKTRVIKSNLNPVWNESLMLSIPE-NIPPLKVLVYDKDTFTT 279 (314)
Q Consensus 202 ~e~~g~L~V~v~~a~~L~~~d~~-~~dPyv~v~l~~~~~kT~~~~~tlnP~w~e~~~f~v~~-~~~~L~i~v~d~d~~~~ 279 (314)
...+|.|.|+|++|++|+..+.. .+||||++.++.+..+|+++++++||.|||.|.|.+.. ....|.|+|||++.++.
T Consensus 11 ~~~~G~L~V~Vi~A~~L~~~d~~g~~DPYv~v~~~~~~~kT~vi~~t~nP~Wne~f~f~v~~~~~~~l~i~V~D~d~~~~ 90 (136)
T cd08375 11 ASGIGRLMVVIVEGRDLKPCNSNGKSDPYCEVSMGSQEHKTKVVSDTLNPKWNSSMQFFVKDLEQDVLCITVFDRDFFSP 90 (136)
T ss_pred CCCcEEEEEEEEEeeCCCCCCCCCCcCcEEEEEECCEeeeccccCCCCCCccCceEEEEecCccCCEEEEEEEECCCCCC
Confidence 34568999999999999988766 89999999999999999999999999999999999865 45679999999999999
Q ss_pred CceeEEEEEeCccccc
Q 021294 280 DDFMGDAEIDIQPLVT 295 (314)
Q Consensus 280 dd~iG~~~v~l~~l~~ 295 (314)
|++||++.++|.++..
T Consensus 91 d~~lG~~~i~l~~l~~ 106 (136)
T cd08375 91 DDFLGRTEIRVADILK 106 (136)
T ss_pred CCeeEEEEEEHHHhcc
Confidence 9999999999999886
No 25
>cd08394 C2A_Munc13 C2 domain first repeat in Munc13 (mammalian uncoordinated) proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi
Probab=99.69 E-value=3.1e-16 Score=124.36 Aligned_cols=90 Identities=20% Similarity=0.310 Sum_probs=79.3
Q ss_pred eeEEEEEEEeeecCCCCCCCCCCcEEEEEECCeEeeeeeecCCCCCcccceeEEEecCCCCcEEEEEEEcCCCCCCceeE
Q 021294 205 VGLIKVNVVKGTNLAVRDVMTSDPYVILALGHQTVKTRVIKSNLNPVWNESLMLSIPENIPPLKVLVYDKDTFTTDDFMG 284 (314)
Q Consensus 205 ~g~L~V~v~~a~~L~~~d~~~~dPyv~v~l~~~~~kT~~~~~tlnP~w~e~~~f~v~~~~~~L~i~v~d~d~~~~dd~iG 284 (314)
++.|.|+|++|++|+..+ ..||||++.+++++.+|++.+. .||.|||.|.|.+......|.|+|||++.+ .||+||
T Consensus 1 m~~L~V~Vv~Ar~L~~~~--~~dPYV~Ik~g~~k~kT~v~~~-~nP~WnE~F~F~~~~~~~~L~v~V~dkd~~-~DD~lG 76 (127)
T cd08394 1 MSLLCVLVKKAKLDGAPD--KFNTYVTLKVQNVKSTTIAVRG-SQPCWEQDFMFEINRLDLGLVIELWNKGLI-WDTLVG 76 (127)
T ss_pred CceEEEEEEEeeCCCCCC--CCCCeEEEEECCEEeEeeECCC-CCCceeeEEEEEEcCCCCEEEEEEEeCCCc-CCCceE
Confidence 468999999999997655 4599999999999999999988 499999999999977666699999999965 899999
Q ss_pred EEEEeCcccccccc
Q 021294 285 DAEIDIQPLVTAAR 298 (314)
Q Consensus 285 ~~~v~l~~l~~~~~ 298 (314)
++.++|.++.....
T Consensus 77 ~v~i~L~~v~~~~~ 90 (127)
T cd08394 77 TVWIPLSTIRQSNE 90 (127)
T ss_pred EEEEEhHHcccCCC
Confidence 99999999886543
No 26
>cd08376 C2B_MCTP_PRT C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP). MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protei
Probab=99.69 E-value=2.8e-16 Score=124.00 Aligned_cols=98 Identities=34% Similarity=0.532 Sum_probs=86.6
Q ss_pred EEEEEEEeeecCCCCCCC-CCCcEEEEEECCeEeeeeeecCCCCCcccceeEEEecCC-CCcEEEEEEEcCCCCCCceeE
Q 021294 207 LIKVNVVKGTNLAVRDVM-TSDPYVILALGHQTVKTRVIKSNLNPVWNESLMLSIPEN-IPPLKVLVYDKDTFTTDDFMG 284 (314)
Q Consensus 207 ~L~V~v~~a~~L~~~d~~-~~dPyv~v~l~~~~~kT~~~~~tlnP~w~e~~~f~v~~~-~~~L~i~v~d~d~~~~dd~iG 284 (314)
+|+|+|++|++|+..+.. .+||||++.++++..+|+++++++||.|+|.|.|.+... ...|.|+|||++..+.+++||
T Consensus 1 ~~~V~v~~a~~L~~~~~~~~~dPyv~v~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~~l~v~v~d~~~~~~~~~iG 80 (116)
T cd08376 1 VVTIVLVEGKNLPPMDDNGLSDPYVKFRLGNEKYKSKVCSKTLNPQWLEQFDLHLFDDQSQILEIEVWDKDTGKKDEFIG 80 (116)
T ss_pred CEEEEEEEEECCCCCCCCCCCCcEEEEEECCEeEecccccCCCCCceeEEEEEEecCCCCCEEEEEEEECCCCCCCCeEE
Confidence 478999999999998866 889999999999999999999999999999999998763 678999999999999999999
Q ss_pred EEEEeCccccccccccCccc
Q 021294 285 DAEIDIQPLVTAARACETPI 304 (314)
Q Consensus 285 ~~~v~l~~l~~~~~~~~~~~ 304 (314)
.+.++|.++..+.....|..
T Consensus 81 ~~~~~l~~l~~~~~~~~w~~ 100 (116)
T cd08376 81 RCEIDLSALPREQTHSLELE 100 (116)
T ss_pred EEEEeHHHCCCCCceEEEEE
Confidence 99999999886655544433
No 27
>cd04042 C2A_MCTP_PRT C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP). MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protein
Probab=99.68 E-value=4.7e-16 Score=123.76 Aligned_cols=98 Identities=39% Similarity=0.579 Sum_probs=86.1
Q ss_pred EEEEEEeeecCCCCCCC-CCCcEEEEEECC-eEeeeeeecCCCCCcccceeEEEecCCCCcEEEEEEEcCCCCCCceeEE
Q 021294 208 IKVNVVKGTNLAVRDVM-TSDPYVILALGH-QTVKTRVIKSNLNPVWNESLMLSIPENIPPLKVLVYDKDTFTTDDFMGD 285 (314)
Q Consensus 208 L~V~v~~a~~L~~~d~~-~~dPyv~v~l~~-~~~kT~~~~~tlnP~w~e~~~f~v~~~~~~L~i~v~d~d~~~~dd~iG~ 285 (314)
|.|+|++|++|+..+.. .+||||++.++. ...+|+++.+++||.|||.|.|.+......|.|+|||++..+.+++||.
T Consensus 2 L~v~v~~a~~L~~~d~~g~~Dpyv~v~~~~~~~~kT~~~~~t~nP~Wne~f~f~v~~~~~~l~~~v~D~d~~~~~~~iG~ 81 (121)
T cd04042 2 LDIHLKEGRNLAARDRGGTSDPYVKFKYGGKTVYKSKTIYKNLNPVWDEKFTLPIEDVTQPLYIKVFDYDRGLTDDFMGS 81 (121)
T ss_pred eEEEEEEeeCCCCcCCCCCCCCeEEEEECCEEEEEeeeccCCCCCccceeEEEEecCCCCeEEEEEEeCCCCCCCcceEE
Confidence 78999999999988876 899999999976 6789999999999999999999987656789999999999999999999
Q ss_pred EEEeCccccccccccCcccc
Q 021294 286 AEIDIQPLVTAARACETPIS 305 (314)
Q Consensus 286 ~~v~l~~l~~~~~~~~~~~~ 305 (314)
+.++|.++..+.....+..+
T Consensus 82 ~~~~l~~l~~~~~~~~~~~L 101 (121)
T cd04042 82 AFVDLSTLELNKPTEVKLKL 101 (121)
T ss_pred EEEEHHHcCCCCCeEEEEEC
Confidence 99999999876555444433
No 28
>cd08681 C2_fungal_Inn1p-like C2 domain found in fungal Ingression 1 (Inn1) proteins. Saccharomyces cerevisiae Inn1 associates with the contractile actomyosin ring at the end of mitosis and is needed for cytokinesis. The C2 domain of Inn1, located at the N-terminus, is required for ingression of the plasma membrane. The C-terminus is relatively unstructured and contains eight PXXP motifs that are thought to mediate interaction of Inn1 with other proteins with SH3 domains in the cytokinesis proteins Hof1 (an F-BAR protein) and Cyk3 (whose overexpression can restore primary septum formation in Inn1Delta cells) as well as recruiting Inn1 to the bud-neck by binding to Cyk3. Inn1 and Cyk3 appear to cooperate in activating chitin synthase Chs2 for primary septum formation, which allows coordination of actomyosin ring contraction with ingression of the cleavage furrow. It is thought that the C2 domain of Inn1 helps to preserve the link between the actomyosin ring and the plasma membrane, contr
Probab=99.68 E-value=3.9e-16 Score=123.59 Aligned_cols=96 Identities=34% Similarity=0.577 Sum_probs=83.1
Q ss_pred eEEEEEEEeeecCCCCCCC-CCCcEEEEEECCeEeeeeeec-CCCCCcccceeEEEecC-CCCcEEEEEEEcCCCCCCce
Q 021294 206 GLIKVNVVKGTNLAVRDVM-TSDPYVILALGHQTVKTRVIK-SNLNPVWNESLMLSIPE-NIPPLKVLVYDKDTFTTDDF 282 (314)
Q Consensus 206 g~L~V~v~~a~~L~~~d~~-~~dPyv~v~l~~~~~kT~~~~-~tlnP~w~e~~~f~v~~-~~~~L~i~v~d~d~~~~dd~ 282 (314)
|.|.|+|++|++|+..+.. .+||||++.++.+..+|+++. .++||.|||.|.|.+.. ....|.|+|||++..+ +++
T Consensus 1 g~L~V~v~~A~~L~~~~~~~~~dpyv~v~~~~~~~kT~~~~~~~~nP~Wne~f~f~v~~~~~~~l~i~v~d~~~~~-~~~ 79 (118)
T cd08681 1 GTLVVVVLKARNLPNKRKLDKQDPYCVLRIGGVTKKTKTDFRGGQHPEWDEELRFEITEDKKPILKVAVFDDDKRK-PDL 79 (118)
T ss_pred CEEEEEEEEccCCCCCCcCCCCCceEEEEECCCccccccccCCCCCCccCceEEEEecCCCCCEEEEEEEeCCCCC-Ccc
Confidence 5799999999999988876 899999999999999999875 47999999999999976 4567999999999876 899
Q ss_pred eEEEEEeCccccccccccCc
Q 021294 283 MGDAEIDIQPLVTAARACET 302 (314)
Q Consensus 283 iG~~~v~l~~l~~~~~~~~~ 302 (314)
||++.+++.++..+.....|
T Consensus 80 iG~~~~~l~~~~~~~~~~~w 99 (118)
T cd08681 80 IGDTEVDLSPALKEGEFDDW 99 (118)
T ss_pred eEEEEEecHHHhhcCCCCCc
Confidence 99999999998765443333
No 29
>cd08688 C2_KIAA0528-like C2 domain found in the Human KIAA0528 cDNA clone. The members of this CD are named after the Human KIAA0528 cDNA clone. All members here contain a single C2 repeat. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/a
Probab=99.67 E-value=4.9e-16 Score=121.64 Aligned_cols=88 Identities=38% Similarity=0.665 Sum_probs=80.3
Q ss_pred EEEEEEeeecCCCCCC-C-CCCcEEEEEECCeEeeeeeecCCCCCcc-cceeEEEecCC---CCcEEEEEEEcCCCCCCc
Q 021294 208 IKVNVVKGTNLAVRDV-M-TSDPYVILALGHQTVKTRVIKSNLNPVW-NESLMLSIPEN---IPPLKVLVYDKDTFTTDD 281 (314)
Q Consensus 208 L~V~v~~a~~L~~~d~-~-~~dPyv~v~l~~~~~kT~~~~~tlnP~w-~e~~~f~v~~~---~~~L~i~v~d~d~~~~dd 281 (314)
|.|+|++|++|+..+. . .+||||++.++.+..+|+++++++||.| +|.|.|.+... ...|.|+|||++.+++++
T Consensus 1 l~V~v~~a~~L~~~d~~~~~~Dpyv~v~~~~~~~kT~v~~~~~nP~W~ne~f~f~i~~~~l~~~~l~i~V~d~d~~~~~~ 80 (110)
T cd08688 1 LKVRVVAARDLPVMDRSSDLTDAFVEVKFGSTTYKTDVVKKSLNPVWNSEWFRFEVDDEELQDEPLQIRVMDHDTYSAND 80 (110)
T ss_pred CEEEEEEEECCCccccCCCCCCceEEEEECCeeEecceecCCCCCcccCcEEEEEcChHHcCCCeEEEEEEeCCCCCCCC
Confidence 5799999999998874 3 7899999999999999999999999999 99999998652 368999999999999999
Q ss_pred eeEEEEEeCccccc
Q 021294 282 FMGDAEIDIQPLVT 295 (314)
Q Consensus 282 ~iG~~~v~l~~l~~ 295 (314)
+||++.++|.++..
T Consensus 81 ~iG~~~~~l~~l~~ 94 (110)
T cd08688 81 AIGKVYIDLNPLLL 94 (110)
T ss_pred ceEEEEEeHHHhcc
Confidence 99999999999986
No 30
>cd04041 C2A_fungal C2 domain first repeat; fungal group. C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligan
Probab=99.67 E-value=5.6e-16 Score=121.52 Aligned_cols=90 Identities=34% Similarity=0.644 Sum_probs=79.6
Q ss_pred eEEEEEEEeeecCCCCCCC--CCCcEEEEEEC---CeEeeeeeecCCCCCcccceeEEEecC----CCCcEEEEEEEcCC
Q 021294 206 GLIKVNVVKGTNLAVRDVM--TSDPYVILALG---HQTVKTRVIKSNLNPVWNESLMLSIPE----NIPPLKVLVYDKDT 276 (314)
Q Consensus 206 g~L~V~v~~a~~L~~~d~~--~~dPyv~v~l~---~~~~kT~~~~~tlnP~w~e~~~f~v~~----~~~~L~i~v~d~d~ 276 (314)
|+|.|+|++|++|+..+.. .+||||++.+. ....+|+++++++||.|||.|.|.+.. ....|.|+|||++.
T Consensus 1 G~L~V~v~~a~~L~~~d~~~~~~Dpyv~v~~~~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~~~~~l~~~V~d~d~ 80 (111)
T cd04041 1 GVLVVTIHRATDLPKADFGTGSSDPYVTASFAKFGKPLYSTRIIRKDLNPVWEETWFVLVTPDEVKAGERLSCRLWDSDR 80 (111)
T ss_pred CEEEEEEEEeeCCCcccCCCCCCCccEEEEEccCCCccEeeeeECCCCCCccceeEEEEeCchhccCCCEEEEEEEeCCC
Confidence 6899999999999988764 78999999983 346799999999999999999998754 24679999999999
Q ss_pred CCCCceeEEEEEeCccccc
Q 021294 277 FTTDDFMGDAEIDIQPLVT 295 (314)
Q Consensus 277 ~~~dd~iG~~~v~l~~l~~ 295 (314)
++.+++||++.+++.+|..
T Consensus 81 ~~~dd~lG~~~i~l~~l~~ 99 (111)
T cd04041 81 FTADDRLGRVEIDLKELIE 99 (111)
T ss_pred CCCCCcceEEEEEHHHHhc
Confidence 9999999999999999973
No 31
>cd04028 C2B_RIM1alpha C2 domain second repeat contained in Rab3-interacting molecule (RIM) proteins. RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as
Probab=99.67 E-value=6.7e-16 Score=126.40 Aligned_cols=101 Identities=23% Similarity=0.361 Sum_probs=84.2
Q ss_pred eeEEEEEEEeeecCCCCC-CC-CCCcEEEEEEC--C---eEeeeeeecCCCCCcccceeEEEecCCCCcEEEEEE-EcCC
Q 021294 205 VGLIKVNVVKGTNLAVRD-VM-TSDPYVILALG--H---QTVKTRVIKSNLNPVWNESLMLSIPENIPPLKVLVY-DKDT 276 (314)
Q Consensus 205 ~g~L~V~v~~a~~L~~~d-~~-~~dPyv~v~l~--~---~~~kT~~~~~tlnP~w~e~~~f~v~~~~~~L~i~v~-d~d~ 276 (314)
.+.|.|+|++|++|+..+ .. .+||||++++. + .+.+|+++++++||+|||+|.|.+......|.|+|| |++.
T Consensus 28 ~~~L~V~Vi~ArnL~~~~~~~g~sDPYVKv~Llp~~~~~~k~KT~v~kktlnPvfNE~F~f~v~l~~~~L~v~V~~d~~~ 107 (146)
T cd04028 28 KGQLEVEVIRARGLVQKPGSKVLPAPYVKVYLLEGKKCIAKKKTKIARKTLDPLYQQQLVFDVSPTGKTLQVIVWGDYGR 107 (146)
T ss_pred CCEEEEEEEEeeCCCcccCCCCCcCCeEEEEEECCCccccceeceecCCCCCCccCCeEEEEEcCCCCEEEEEEEeCCCC
Confidence 478999999999998764 33 78999999993 2 367999999999999999999999866678999999 6888
Q ss_pred CCCCceeEEEEEeCccccccccccCcccc
Q 021294 277 FTTDDFMGDAEIDIQPLVTAARACETPIS 305 (314)
Q Consensus 277 ~~~dd~iG~~~v~l~~l~~~~~~~~~~~~ 305 (314)
++++++||++.|+|..+..+.....|..+
T Consensus 108 ~~~~~~iG~~~i~L~~l~~~~~~~~Wy~L 136 (146)
T cd04028 108 MDKKVFMGVAQILLDDLDLSNLVIGWYKL 136 (146)
T ss_pred CCCCceEEEEEEEcccccCCCCceeEEec
Confidence 88999999999999998655444344433
No 32
>cd04025 C2B_RasA1_RasA4 C2 domain second repeat present in RasA1 and RasA4. RasA1 and RasA4 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both proteins contain two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such a
Probab=99.66 E-value=1.3e-15 Score=121.56 Aligned_cols=99 Identities=32% Similarity=0.461 Sum_probs=86.1
Q ss_pred EEEEEEEeeecCCCCCCC-CCCcEEEEEECCeEeeeeeecCCCCCcccceeEEEecC-CCCcEEEEEEEcCCCCCCceeE
Q 021294 207 LIKVNVVKGTNLAVRDVM-TSDPYVILALGHQTVKTRVIKSNLNPVWNESLMLSIPE-NIPPLKVLVYDKDTFTTDDFMG 284 (314)
Q Consensus 207 ~L~V~v~~a~~L~~~d~~-~~dPyv~v~l~~~~~kT~~~~~tlnP~w~e~~~f~v~~-~~~~L~i~v~d~d~~~~dd~iG 284 (314)
.|.|+|++|++|+..+.. .+||||++.++++..+|+++++++||.|+|.|.|.+.. ....|.|+|||++..+.+++||
T Consensus 1 ~L~v~vi~a~~L~~~d~~~~~DPyv~v~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~~l~~~v~d~~~~~~~~~iG 80 (123)
T cd04025 1 RLRCHVLEARDLAPKDRNGTSDPFVRVFYNGQTLETSVVKKSCYPRWNEVFEFELMEGADSPLSVEVWDWDLVSKNDFLG 80 (123)
T ss_pred CEEEEEEEeeCCCCCCCCCCcCceEEEEECCEEEeceeecCCCCCccCcEEEEEcCCCCCCEEEEEEEECCCCCCCcEeE
Confidence 378999999999988876 78999999999999999999999999999999999876 3467999999999999999999
Q ss_pred EEEEeCccccccccccCcccc
Q 021294 285 DAEIDIQPLVTAARACETPIS 305 (314)
Q Consensus 285 ~~~v~l~~l~~~~~~~~~~~~ 305 (314)
.+.++|.++..+.....|..+
T Consensus 81 ~~~~~l~~l~~~~~~~~w~~L 101 (123)
T cd04025 81 KVVFSIQTLQQAKQEEGWFRL 101 (123)
T ss_pred EEEEEHHHcccCCCCCCEEEC
Confidence 999999999765444444433
No 33
>cd04032 C2_Perforin C2 domain of Perforin. Perforin contains a single copy of a C2 domain in its C-terminus and plays a role in lymphocyte-mediated cytotoxicity. Mutations in perforin leads to familial hemophagocytic lymphohistiocytosis type 2. The function of perforin is calcium dependent and the C2 domain is thought to confer this binding to target cell membranes. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few
Probab=99.66 E-value=7.9e-16 Score=123.23 Aligned_cols=91 Identities=27% Similarity=0.354 Sum_probs=80.1
Q ss_pred eeeEEEEEEEeeecCCCCCCCCCCcEEEEEECCeEeeeeeecCCCCCcccceeEEEec--CCCCcEEEEEEEcCCCCCCc
Q 021294 204 FVGLIKVNVVKGTNLAVRDVMTSDPYVILALGHQTVKTRVIKSNLNPVWNESLMLSIP--ENIPPLKVLVYDKDTFTTDD 281 (314)
Q Consensus 204 ~~g~L~V~v~~a~~L~~~d~~~~dPyv~v~l~~~~~kT~~~~~tlnP~w~e~~~f~v~--~~~~~L~i~v~d~d~~~~dd 281 (314)
-++.|.|+|++|++|+......+||||+|.++++..+|+++++++||+|||+|.|... .....|+|+|||++.++.|+
T Consensus 26 ~~~~L~V~V~~A~~L~~d~~g~~DPYVkV~~~~~~~kT~vi~~t~nPvWNE~F~f~~~~~~~~~~L~v~V~D~d~~s~dd 105 (127)
T cd04032 26 GLATLTVTVLRATGLWGDYFTSTDGYVKVFFGGQEKRTEVIWNNNNPRWNATFDFGSVELSPGGKLRFEVWDRDNGWDDD 105 (127)
T ss_pred CcEEEEEEEEECCCCCcCcCCCCCeEEEEEECCccccCceecCCCCCcCCCEEEEecccCCCCCEEEEEEEeCCCCCCCC
Confidence 4579999999999998533337899999999999999999999999999999999743 24678999999999999999
Q ss_pred eeEEEEEeCcccc
Q 021294 282 FMGDAEIDIQPLV 294 (314)
Q Consensus 282 ~iG~~~v~l~~l~ 294 (314)
+||.+.++|....
T Consensus 106 ~IG~~~i~l~~~~ 118 (127)
T cd04032 106 LLGTCSVVPEAGV 118 (127)
T ss_pred eeEEEEEEecCCc
Confidence 9999999999665
No 34
>cd04024 C2A_Synaptotagmin-like C2 domain first repeat present in Synaptotagmin-like proteins. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permu
Probab=99.66 E-value=1.2e-15 Score=122.28 Aligned_cols=90 Identities=37% Similarity=0.680 Sum_probs=83.2
Q ss_pred eEEEEEEEeeecCCCCCC--C-CCCcEEEEEECCeEeeeeeecCCCCCcccceeEEEecC-CCCcEEEEEEEcCCCCCCc
Q 021294 206 GLIKVNVVKGTNLAVRDV--M-TSDPYVILALGHQTVKTRVIKSNLNPVWNESLMLSIPE-NIPPLKVLVYDKDTFTTDD 281 (314)
Q Consensus 206 g~L~V~v~~a~~L~~~d~--~-~~dPyv~v~l~~~~~kT~~~~~tlnP~w~e~~~f~v~~-~~~~L~i~v~d~d~~~~dd 281 (314)
|.|.|+|++|++|+..+. . .+||||++.++.+..+|+++++++||.|+|.|.|.+.. ....|.|+|||++..+.++
T Consensus 1 g~l~v~v~~a~~L~~~~~~~~~~~dPyv~v~~~~~~~kT~~~~~t~~P~Wne~f~~~~~~~~~~~l~i~v~d~~~~~~~~ 80 (128)
T cd04024 1 GVLRVHVVEAKDLAAKDRSGKGKSDPYAILSVGAQRFKTQTIPNTLNPKWNYWCEFPIFSAQNQLLKLILWDKDRFAGKD 80 (128)
T ss_pred CEEEEEEEEeeCCCcccCCCCCCcCCeEEEEECCEEEecceecCCcCCccCCcEEEEecCCCCCEEEEEEEECCCCCCCC
Confidence 689999999999998886 5 89999999999999999999999999999999999976 5678999999999998999
Q ss_pred eeEEEEEeCccccc
Q 021294 282 FMGDAEIDIQPLVT 295 (314)
Q Consensus 282 ~iG~~~v~l~~l~~ 295 (314)
+||.+.++|.++..
T Consensus 81 ~lG~~~i~l~~~~~ 94 (128)
T cd04024 81 YLGEFDIALEEVFA 94 (128)
T ss_pred cceEEEEEHHHhhc
Confidence 99999999999874
No 35
>cd08377 C2C_MCTP_PRT C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP). MCTPs are involved in Ca2+ signaling at the membrane. The cds in this family contain multiple C2 domains as well as a C-terminal PRT domain. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal tran
Probab=99.66 E-value=1.4e-15 Score=120.38 Aligned_cols=92 Identities=30% Similarity=0.581 Sum_probs=84.0
Q ss_pred eEEEEEEEeeecCCCCCCC-CCCcEEEEEECCeEeeeeeecCCCCCcccceeEEEecCCCCcEEEEEEEcCCCCCCceeE
Q 021294 206 GLIKVNVVKGTNLAVRDVM-TSDPYVILALGHQTVKTRVIKSNLNPVWNESLMLSIPENIPPLKVLVYDKDTFTTDDFMG 284 (314)
Q Consensus 206 g~L~V~v~~a~~L~~~d~~-~~dPyv~v~l~~~~~kT~~~~~tlnP~w~e~~~f~v~~~~~~L~i~v~d~d~~~~dd~iG 284 (314)
|.|.|+|++|++|+..+.. .+||||++.++....+|++++++.||.|+|+|.|.+......|.|+|||++..+.+++||
T Consensus 1 g~l~v~v~~a~~L~~~~~~~~~dPyv~v~~~~~~~~T~~~~~t~nP~W~e~f~~~~~~~~~~l~~~v~d~~~~~~~~~iG 80 (119)
T cd08377 1 GFLQVKVIRASGLAAADIGGKSDPFCVLELVNARLQTHTIYKTLNPEWNKIFTFPIKDIHDVLEVTVYDEDKDKKPEFLG 80 (119)
T ss_pred CEEEEEEEeeeCCCCCCCCCCCCcEEEEEECCEeeecceecCCcCCccCcEEEEEecCcCCEEEEEEEECCCCCCCceee
Confidence 6799999999999988876 899999999998889999999999999999999998765678999999999988999999
Q ss_pred EEEEeCccccccc
Q 021294 285 DAEIDIQPLVTAA 297 (314)
Q Consensus 285 ~~~v~l~~l~~~~ 297 (314)
++.+++.++..+.
T Consensus 81 ~~~~~l~~~~~~~ 93 (119)
T cd08377 81 KVAIPLLSIKNGE 93 (119)
T ss_pred EEEEEHHHCCCCC
Confidence 9999999987553
No 36
>cd04029 C2A_SLP-4_5 C2 domain first repeat present in Synaptotagmin-like proteins 4 and 5. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp4/granuphilin promotes dense-core vesicle exocytosis. The C2A domain of Slp4 is Ca2+ dependent. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2
Probab=99.65 E-value=1.2e-15 Score=122.20 Aligned_cols=98 Identities=30% Similarity=0.406 Sum_probs=83.0
Q ss_pred eeeeEEEEEEEeeecCCCCCC--CCCCcEEEEEEC-----CeEeeeeeecCCCCCcccceeEEEecC---CCCcEEEEEE
Q 021294 203 EFVGLIKVNVVKGTNLAVRDV--MTSDPYVILALG-----HQTVKTRVIKSNLNPVWNESLMLSIPE---NIPPLKVLVY 272 (314)
Q Consensus 203 e~~g~L~V~v~~a~~L~~~d~--~~~dPyv~v~l~-----~~~~kT~~~~~tlnP~w~e~~~f~v~~---~~~~L~i~v~ 272 (314)
...+.|.|.|++|++|+..+. ..+||||++++. ..+.+|+++++++||.|||+|.|.+.. ....|.|+||
T Consensus 12 ~~~~~L~V~Vi~a~~L~~~~~~~~~~DpyVkv~l~p~~~~~~~~kT~v~~~t~nP~wnE~f~f~i~~~~l~~~~L~~~V~ 91 (125)
T cd04029 12 YKTQSLNVHVKECRNLAYGDEAKKRSNPYVKTYLLPDKSRQSKRKTSIKRNTTNPVYNETLKYSISHSQLETRTLQLSVW 91 (125)
T ss_pred CCCCeEEEEEEEecCCCccCCCCCCCCcEEEEEEEcCCccccceEeeeeeCCCCCcccceEEEECCHHHhCCCEEEEEEE
Confidence 456789999999999988764 379999999993 235789999999999999999999864 3457999999
Q ss_pred EcCCCCCCceeEEEEEeCcccccccccc
Q 021294 273 DKDTFTTDDFMGDAEIDIQPLVTAARAC 300 (314)
Q Consensus 273 d~d~~~~dd~iG~~~v~l~~l~~~~~~~ 300 (314)
|++.++++++||++.++|..+.......
T Consensus 92 d~~~~~~~~~lG~~~i~l~~~~~~~~~~ 119 (125)
T cd04029 92 HYDRFGRNTFLGEVEIPLDSWNFDSQHE 119 (125)
T ss_pred ECCCCCCCcEEEEEEEeCCcccccCCcc
Confidence 9999999999999999999986554433
No 37
>cd08393 C2A_SLP-1_2 C2 domain first repeat present in Synaptotagmin-like proteins 1 and 2. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike Slp3 and Slp4/granuphilin which are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety
Probab=99.65 E-value=1.1e-15 Score=122.53 Aligned_cols=92 Identities=32% Similarity=0.484 Sum_probs=80.8
Q ss_pred eeEEEEEEEeeecCCCCCCC--CCCcEEEEEEC-----CeEeeeeeecCCCCCcccceeEEEecC---CCCcEEEEEEEc
Q 021294 205 VGLIKVNVVKGTNLAVRDVM--TSDPYVILALG-----HQTVKTRVIKSNLNPVWNESLMLSIPE---NIPPLKVLVYDK 274 (314)
Q Consensus 205 ~g~L~V~v~~a~~L~~~d~~--~~dPyv~v~l~-----~~~~kT~~~~~tlnP~w~e~~~f~v~~---~~~~L~i~v~d~ 274 (314)
.+.|.|+|++|++|+..+.. .+||||++++. ..+.+|+++++++||.|||.|.|.+.. ....|.|+|||+
T Consensus 14 ~~~L~V~vi~a~~L~~~d~~~g~~dpyVkv~l~p~~~~~~~~kT~v~~~t~nP~~nE~f~f~v~~~~l~~~~L~~~V~d~ 93 (125)
T cd08393 14 LRELHVHVIQCQDLAAADPKKQRSDPYVKTYLLPDKSNRGKRKTSVKKKTLNPVFNETLRYKVEREELPTRVLNLSVWHR 93 (125)
T ss_pred CCEEEEEEEEeCCCCCcCCCCCCCCcEEEEEEEcCCCccccccCccCcCCCCCccCceEEEECCHHHhCCCEEEEEEEeC
Confidence 46899999999999998853 79999999993 245799999999999999999999864 346799999999
Q ss_pred CCCCCCceeEEEEEeCcccccc
Q 021294 275 DTFTTDDFMGDAEIDIQPLVTA 296 (314)
Q Consensus 275 d~~~~dd~iG~~~v~l~~l~~~ 296 (314)
+.++++++||++.++|.++...
T Consensus 94 ~~~~~~~~iG~~~i~L~~~~~~ 115 (125)
T cd08393 94 DSLGRNSFLGEVEVDLGSWDWS 115 (125)
T ss_pred CCCCCCcEeEEEEEecCccccC
Confidence 9999999999999999998644
No 38
>cd04044 C2A_Tricalbin-like C2 domain first repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.65 E-value=1.8e-15 Score=120.53 Aligned_cols=96 Identities=30% Similarity=0.582 Sum_probs=85.1
Q ss_pred eeEEEEEEEeeecCCCCCCC--CCCcEEEEEECC--eEeeeeeecCCCCCcccceeEEEecCCCCcEEEEEEEcCCCCCC
Q 021294 205 VGLIKVNVVKGTNLAVRDVM--TSDPYVILALGH--QTVKTRVIKSNLNPVWNESLMLSIPENIPPLKVLVYDKDTFTTD 280 (314)
Q Consensus 205 ~g~L~V~v~~a~~L~~~d~~--~~dPyv~v~l~~--~~~kT~~~~~tlnP~w~e~~~f~v~~~~~~L~i~v~d~d~~~~d 280 (314)
+|.|.|+|++|++|+..+.. .+||||++.++. ...+|++++++.||.|||.|.|.+......|.|+|||++..+.+
T Consensus 1 ~g~l~v~v~~a~~L~~~~~~~~~~dpyv~v~~~~~~~~~kT~~~~~~~~P~Wne~~~~~v~~~~~~l~~~v~d~~~~~~d 80 (124)
T cd04044 1 IGVLAVTIKSARGLKGSDIIGGTVDPYVTFSISNRRELARTKVKKDTSNPVWNETKYILVNSLTEPLNLTVYDFNDKRKD 80 (124)
T ss_pred CeEEEEEEEcccCCCcccccCCCCCCeEEEEECCCCcceEeeeecCCCCCcceEEEEEEeCCCCCEEEEEEEecCCCCCC
Confidence 47899999999999965533 689999999977 78999999999999999999999886678899999999999899
Q ss_pred ceeEEEEEeCcccccccccc
Q 021294 281 DFMGDAEIDIQPLVTAARAC 300 (314)
Q Consensus 281 d~iG~~~v~l~~l~~~~~~~ 300 (314)
++||.+.++|.++.......
T Consensus 81 ~~iG~~~~~l~~l~~~~~~~ 100 (124)
T cd04044 81 KLIGTAEFDLSSLLQNPEQE 100 (124)
T ss_pred ceeEEEEEEHHHhccCcccc
Confidence 99999999999998765543
No 39
>cd08401 C2A_RasA2_RasA3 C2 domain first repeat present in RasA2 and RasA3. RasA2 and RasA3 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA2 and RasA3 are both inositol 1,3,4,5-tetrakisphosphate-binding proteins and contain an N-terminal C2 domain, a Ras-GAP domain, a pleckstrin-homology (PH) domain which localizes it to the plasma membrane, and Bruton's Tyrosine Kinase (BTK) a zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular p
Probab=99.64 E-value=2.1e-15 Score=120.08 Aligned_cols=96 Identities=22% Similarity=0.399 Sum_probs=82.7
Q ss_pred EEEEEEeeecCCCCCC--CCCCcEEEEEECCe-EeeeeeecCCCCCcccceeEEEecCCCCcEEEEEEEcCCCCCCceeE
Q 021294 208 IKVNVVKGTNLAVRDV--MTSDPYVILALGHQ-TVKTRVIKSNLNPVWNESLMLSIPENIPPLKVLVYDKDTFTTDDFMG 284 (314)
Q Consensus 208 L~V~v~~a~~L~~~d~--~~~dPyv~v~l~~~-~~kT~~~~~tlnP~w~e~~~f~v~~~~~~L~i~v~d~d~~~~dd~iG 284 (314)
|.|+|++|++|+..+. ..+||||.+.++++ ..+|+++++++||.|||.|.|.+.+....|.|.|||++.++++++||
T Consensus 2 l~v~v~~a~~L~~~~~~~g~sDpYv~v~l~~~~~~kT~v~~kt~~P~WnE~F~f~v~~~~~~l~~~v~d~~~~~~~~~iG 81 (121)
T cd08401 2 LKIKIGEAKNLPPRSGPNKMRDCYCTVNLDQEEVFRTKTVEKSLCPFFGEDFYFEIPRTFRHLSFYIYDRDVLRRDSVIG 81 (121)
T ss_pred eEEEEEEccCCCCCCCCCCCcCcEEEEEECCccEEEeeEEECCCCCccCCeEEEEcCCCCCEEEEEEEECCCCCCCceEE
Confidence 6789999999998643 27899999999765 57999999999999999999999876678999999999999999999
Q ss_pred EEEEeCccccccccccCcc
Q 021294 285 DAEIDIQPLVTAARACETP 303 (314)
Q Consensus 285 ~~~v~l~~l~~~~~~~~~~ 303 (314)
.+.++|+++..+.....|.
T Consensus 82 ~~~i~l~~l~~~~~~~~w~ 100 (121)
T cd08401 82 KVAIKKEDLHKYYGKDTWF 100 (121)
T ss_pred EEEEEHHHccCCCCcEeeE
Confidence 9999999997655444333
No 40
>cd08678 C2_C21orf25-like C2 domain found in the Human chromosome 21 open reading frame 25 (C21orf25) protein. The members in this cd are named after the Human C21orf25 which contains a single C2 domain. Several other members contain a C1 domain downstream of the C2 domain. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a
Probab=99.64 E-value=1.6e-15 Score=121.66 Aligned_cols=94 Identities=23% Similarity=0.425 Sum_probs=81.9
Q ss_pred EEEEEEeeecCCCCCCCCCCcEEEEEEC--CeEeeeeeecCCCCCcccceeEEEecCCCCcEEEEEEEcCCCCCCceeEE
Q 021294 208 IKVNVVKGTNLAVRDVMTSDPYVILALG--HQTVKTRVIKSNLNPVWNESLMLSIPENIPPLKVLVYDKDTFTTDDFMGD 285 (314)
Q Consensus 208 L~V~v~~a~~L~~~d~~~~dPyv~v~l~--~~~~kT~~~~~tlnP~w~e~~~f~v~~~~~~L~i~v~d~d~~~~dd~iG~ 285 (314)
|.|+|++|++|+. ..+.+||||++.++ .+..+|+++++++||.|||.|.|.+......|.|+|||++..+.+++||+
T Consensus 1 l~v~v~~A~~L~~-~~g~~dpyv~v~~~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~l~~~v~d~~~~~~~~~lG~ 79 (126)
T cd08678 1 LLVKNIKANGLSE-AAGSSNPYCVLEMDEPPQKYQSSTQKNTSNPFWDEHFLFELSPNSKELLFEVYDNGKKSDSKFLGL 79 (126)
T ss_pred CEEEEEEecCCCC-CCCCcCCEEEEEECCCCcEEEeEEEecCCCCccCceEEEEeCCCCCEEEEEEEECCCCCCCceEEE
Confidence 5799999999988 44489999999997 36689999999999999999999997666789999999999999999999
Q ss_pred EEEeCccccccccccCc
Q 021294 286 AEIDIQPLVTAARACET 302 (314)
Q Consensus 286 ~~v~l~~l~~~~~~~~~ 302 (314)
+.++|.++........+
T Consensus 80 ~~i~l~~l~~~~~~~~~ 96 (126)
T cd08678 80 AIVPFDELRKNPSGRQI 96 (126)
T ss_pred EEEeHHHhccCCceeEE
Confidence 99999998866544433
No 41
>cd04050 C2B_Synaptotagmin-like C2 domain second repeat present in Synaptotagmin-like proteins. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular perm
Probab=99.64 E-value=1.7e-15 Score=117.52 Aligned_cols=88 Identities=26% Similarity=0.455 Sum_probs=79.5
Q ss_pred EEEEEEEeeecCCCCCCC-CCCcEEEEEECCeEeeeeeecCCCCCcccceeEEEecC-CCCcEEEEEEEcCCCCCCceeE
Q 021294 207 LIKVNVVKGTNLAVRDVM-TSDPYVILALGHQTVKTRVIKSNLNPVWNESLMLSIPE-NIPPLKVLVYDKDTFTTDDFMG 284 (314)
Q Consensus 207 ~L~V~v~~a~~L~~~d~~-~~dPyv~v~l~~~~~kT~~~~~tlnP~w~e~~~f~v~~-~~~~L~i~v~d~d~~~~dd~iG 284 (314)
.|.|+|++|++|+..+.. .+||||++.++++..+|++++++.||.|||.|.|.+.. ....|.|+|||++. +++||
T Consensus 1 ~L~V~v~~A~~L~~~~~~~~~dpyv~v~~~~~~~kT~v~~~t~nP~Wne~f~f~v~~~~~~~l~v~v~d~~~---~~~iG 77 (105)
T cd04050 1 LLFVYLDSAKNLPLAKSTKEPSPYVELTVGKTTQKSKVKERTNNPVWEEGFTFLVRNPENQELEIEVKDDKT---GKSLG 77 (105)
T ss_pred CEEEEEeeecCCCCcccCCCCCcEEEEEECCEEEeCccccCCCCCcccceEEEEeCCCCCCEEEEEEEECCC---CCccE
Confidence 378999999999988766 89999999999999999999999999999999999976 45789999999886 78999
Q ss_pred EEEEeCccccccc
Q 021294 285 DAEIDIQPLVTAA 297 (314)
Q Consensus 285 ~~~v~l~~l~~~~ 297 (314)
++.++|.++....
T Consensus 78 ~~~i~l~~l~~~~ 90 (105)
T cd04050 78 SLTLPLSELLKEP 90 (105)
T ss_pred EEEEEHHHhhccc
Confidence 9999999998653
No 42
>cd04045 C2C_Tricalbin-like C2 domain third repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.64 E-value=2.4e-15 Score=119.57 Aligned_cols=101 Identities=23% Similarity=0.428 Sum_probs=87.4
Q ss_pred eEEEEEEEeeecCCCCCCC-CCCcEEEEEECC-eEeeeeeecCCCCCcccceeEEEecCCCCcEEEEEEEcCCCCCCcee
Q 021294 206 GLIKVNVVKGTNLAVRDVM-TSDPYVILALGH-QTVKTRVIKSNLNPVWNESLMLSIPENIPPLKVLVYDKDTFTTDDFM 283 (314)
Q Consensus 206 g~L~V~v~~a~~L~~~d~~-~~dPyv~v~l~~-~~~kT~~~~~tlnP~w~e~~~f~v~~~~~~L~i~v~d~d~~~~dd~i 283 (314)
|.|.|+|++|++|+..+.. .+||||++.+++ ...+|++++++.||.|||.|.|.+......|.|+|||++..+.+++|
T Consensus 1 g~L~V~Vi~a~~L~~~d~~g~~DPYv~v~~~~~~~~kT~~~~~t~~P~Wne~f~~~v~~~~~~L~v~v~d~~~~~~d~~I 80 (120)
T cd04045 1 GVLRLHIRKANDLKNLEGVGKIDPYVRVLVNGIVKGRTVTISNTLNPVWDEVLYVPVTSPNQKITLEVMDYEKVGKDRSL 80 (120)
T ss_pred CeEEEEEEeeECCCCccCCCCcCCEEEEEECCEEeeceeEECCCcCCccCceEEEEecCCCCEEEEEEEECCCCCCCCee
Confidence 6799999999999988766 899999999976 56899999999999999999999877667899999999999999999
Q ss_pred EEEEEeCccccccccccCcccccC
Q 021294 284 GDAEIDIQPLVTAARACETPISMS 307 (314)
Q Consensus 284 G~~~v~l~~l~~~~~~~~~~~~~~ 307 (314)
|++.++|.++... ....+..++.
T Consensus 81 G~~~~~l~~l~~~-~~~~~~~~~~ 103 (120)
T cd04045 81 GSVEINVSDLIKK-NEDGKYVEYD 103 (120)
T ss_pred eEEEEeHHHhhCC-CCCceEEecC
Confidence 9999999999876 4444444443
No 43
>cd08680 C2_Kibra C2 domain found in Human protein Kibra. Kibra is thought to be a regulator of the Salvador (Sav)/Warts (Wts)/Hippo (Hpo) (SWH) signaling network, which limits tissue growth by inhibiting cell proliferation and promoting apoptosis. The core of the pathway consists of a MST and LATS family kinase cascade that ultimately phosphorylates and inactivates the YAP/Yorkie (Yki) transcription coactivator. The FERM domain proteins Merlin (Mer) and Expanded (Ex) are part of the upstream regulation controlling pathway mechanism. Kibra colocalizes and associates with Mer and Ex and is thought to transduce an extracellular signal via the SWH network. The apical scaffold machinery that contains Hpo, Wts, and Ex recruits Yki to the apical membrane facilitating its inhibitory phosphorlyation by Wts. Since Kibra associates with Ex and is apically located it is hypothesized that KIBRA is part of the scaffold, helps in the Hpo/Wts complex, and helps recruit Yki for inactivation that prom
Probab=99.64 E-value=1.9e-15 Score=120.63 Aligned_cols=94 Identities=21% Similarity=0.270 Sum_probs=81.9
Q ss_pred eeeEEEEEEEeeecCCCCCCC-CCCcEEEEEEC------CeEeeeeeecCCCCCcccceeEEEecC---CCCcEEEEEEE
Q 021294 204 FVGLIKVNVVKGTNLAVRDVM-TSDPYVILALG------HQTVKTRVIKSNLNPVWNESLMLSIPE---NIPPLKVLVYD 273 (314)
Q Consensus 204 ~~g~L~V~v~~a~~L~~~d~~-~~dPyv~v~l~------~~~~kT~~~~~tlnP~w~e~~~f~v~~---~~~~L~i~v~d 273 (314)
..+.|.|+|++|+||+..+.. .+||||++++- ..+.+|+++++++||+|||+|.|.++. ....|.|.||+
T Consensus 12 ~~~~L~V~V~~arnL~~~~~~~~~dpyVKv~Llp~~~~~~~~~kT~v~~~t~nPvfnE~F~f~v~~~~L~~~~L~~~V~~ 91 (124)
T cd08680 12 GDSSLVISVEQLRNLSALSIPENSKVYVRVALLPCSSSTSCLFRTKALEDQDKPVFNEVFRVPISSTKLYQKTLQVDVCS 91 (124)
T ss_pred CCCEEEEEEeEecCCcccccCCCCCeEEEEEEccCCCCCCceEEcCccCCCCCCccccEEEEECCHHHhhcCEEEEEEEe
Confidence 446899999999999988765 78999999982 247899999999999999999999865 45789999999
Q ss_pred cCCCCCCceeEEEEEeCccccccc
Q 021294 274 KDTFTTDDFMGDAEIDIQPLVTAA 297 (314)
Q Consensus 274 ~d~~~~dd~iG~~~v~l~~l~~~~ 297 (314)
++.++++++||++.++|.++-...
T Consensus 92 ~~~~~~~~~lG~~~i~L~~~~~~~ 115 (124)
T cd08680 92 VGPDQQEECLGGAQISLADFESSE 115 (124)
T ss_pred CCCCCceeEEEEEEEEhhhccCCC
Confidence 999999999999999999985443
No 44
>cd04022 C2A_MCTP_PRT_plant C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates
Probab=99.64 E-value=1.5e-15 Score=121.91 Aligned_cols=89 Identities=31% Similarity=0.502 Sum_probs=80.0
Q ss_pred EEEEEEEeeecCCCCCCC-CCCcEEEEEECCeEeeeeeecCCCCCcccceeEEEecCC----CCcEEEEEEEcCCCC-CC
Q 021294 207 LIKVNVVKGTNLAVRDVM-TSDPYVILALGHQTVKTRVIKSNLNPVWNESLMLSIPEN----IPPLKVLVYDKDTFT-TD 280 (314)
Q Consensus 207 ~L~V~v~~a~~L~~~d~~-~~dPyv~v~l~~~~~kT~~~~~tlnP~w~e~~~f~v~~~----~~~L~i~v~d~d~~~-~d 280 (314)
.|.|+|++|++|+..+.. .+||||++.++.+..+|+++++++||.|||.|.|.+... ...|.|+|||++.++ .+
T Consensus 1 ~L~V~vi~A~~L~~~d~~g~~dpyv~v~~~~~~~rT~v~~~t~nP~Wne~f~f~~~~~~~~~~~~l~~~V~d~~~~~~~d 80 (127)
T cd04022 1 KLVVEVVDAQDLMPKDGQGSSSAYVELDFDGQKKRTRTKPKDLNPVWNEKLVFNVSDPSRLSNLVLEVYVYNDRRSGRRR 80 (127)
T ss_pred CeEEEEEEeeCCCCCCCCCCcCcEEEEEECCEEecceeEcCCCCCccceEEEEEccCHHHccCCeEEEEEeeCCCCcCCC
Confidence 378999999999988765 899999999999999999999999999999999998642 357999999999886 89
Q ss_pred ceeEEEEEeCccccc
Q 021294 281 DFMGDAEIDIQPLVT 295 (314)
Q Consensus 281 d~iG~~~v~l~~l~~ 295 (314)
++||++.+++.++..
T Consensus 81 ~~lG~v~i~l~~l~~ 95 (127)
T cd04022 81 SFLGRVRISGTSFVP 95 (127)
T ss_pred CeeeEEEEcHHHcCC
Confidence 999999999999873
No 45
>cd04054 C2A_Rasal1_RasA4 C2 domain first repeat present in RasA1 and RasA4. Rasal1 and RasA4 are both members of GAP1 (GTPase activating protein 1). Rasal1 responds to repetitive Ca2+ signals by associating with the plasma membrane and deactivating Ras. RasA4 suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both of these proteins contains two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins.
Probab=99.64 E-value=3.4e-15 Score=118.87 Aligned_cols=99 Identities=25% Similarity=0.586 Sum_probs=85.1
Q ss_pred EEEEEEeeecCCCCCCC-CCCcEEEEEECCeE-eeeeeecCCCCCcccceeEEEecCCCCcEEEEEEEcCCCCCCceeEE
Q 021294 208 IKVNVVKGTNLAVRDVM-TSDPYVILALGHQT-VKTRVIKSNLNPVWNESLMLSIPENIPPLKVLVYDKDTFTTDDFMGD 285 (314)
Q Consensus 208 L~V~v~~a~~L~~~d~~-~~dPyv~v~l~~~~-~kT~~~~~tlnP~w~e~~~f~v~~~~~~L~i~v~d~d~~~~dd~iG~ 285 (314)
|.|+|++|++|+..+.. .+||||++.+++.. .+|+++++++||.|||.|.|.+......|.|+|||++.++.+++||+
T Consensus 2 l~v~vi~a~~L~~~d~~g~~DPYv~v~~~~~~~~kT~v~~~t~nP~Wne~f~~~~~~~~~~l~v~v~d~~~~~~d~~iG~ 81 (121)
T cd04054 2 LYIRIVEGKNLPAKDITGSSDPYCIVKVDNEVIIRTATVWKTLNPFWGEEYTVHLPPGFHTVSFYVLDEDTLSRDDVIGK 81 (121)
T ss_pred EEEEEEEeeCCcCCCCCCCCCceEEEEECCEeeeeeeeEcCCCCCcccceEEEeeCCCCCEEEEEEEECCCCCCCCEEEE
Confidence 78999999999998876 89999999997654 69999999999999999999987666789999999999999999999
Q ss_pred EEEeCccccccccccCccccc
Q 021294 286 AEIDIQPLVTAARACETPISM 306 (314)
Q Consensus 286 ~~v~l~~l~~~~~~~~~~~~~ 306 (314)
+.+++..+.......+.|..+
T Consensus 82 ~~~~~~~~~~~~~~~~~W~~L 102 (121)
T cd04054 82 VSLTREVISAHPRGIDGWMNL 102 (121)
T ss_pred EEEcHHHhccCCCCCCcEEEC
Confidence 999998887544434445444
No 46
>cd04036 C2_cPLA2 C2 domain present in cytosolic PhosphoLipase A2 (cPLA2). A single copy of the C2 domain is present in cPLA2 which releases arachidonic acid from membranes initiating the biosynthesis of potent inflammatory mediators such as prostaglandins, leukotrienes, and platelet-activating factor. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants o
Probab=99.64 E-value=1.5e-15 Score=120.45 Aligned_cols=95 Identities=33% Similarity=0.507 Sum_probs=81.6
Q ss_pred EEEEEEeeecCCCCCCC-CCCcEEEEEEC---CeEeeeeeecCCCCCcccceeEEEecC-CCCcEEEEEEEcCCCCCCce
Q 021294 208 IKVNVVKGTNLAVRDVM-TSDPYVILALG---HQTVKTRVIKSNLNPVWNESLMLSIPE-NIPPLKVLVYDKDTFTTDDF 282 (314)
Q Consensus 208 L~V~v~~a~~L~~~d~~-~~dPyv~v~l~---~~~~kT~~~~~tlnP~w~e~~~f~v~~-~~~~L~i~v~d~d~~~~dd~ 282 (314)
|.|+|++|++|+..+.. .+||||++.++ ....+|++++++.||.|||.|.|.+.. ....|.|+|||++.+ .+++
T Consensus 2 L~V~vi~a~~L~~~~~~~~~Dpyv~v~~~~~~~~~~kT~vv~~t~nP~Wne~f~f~i~~~~~~~l~v~v~d~d~~-~~~~ 80 (119)
T cd04036 2 LTVRVLRATNITKGDLLSTPDCYVELWLPTASDEKKRTKTIKNSINPVWNETFEFRIQSQVKNVLELTVMDEDYV-MDDH 80 (119)
T ss_pred eEEEEEEeeCCCccCCCCCCCcEEEEEEcCCCCccCccceecCCCCCccceEEEEEeCcccCCEEEEEEEECCCC-CCcc
Confidence 78999999999988765 89999999985 366899999999999999999999865 345699999999998 8999
Q ss_pred eEEEEEeCccccccccccCcc
Q 021294 283 MGDAEIDIQPLVTAARACETP 303 (314)
Q Consensus 283 iG~~~v~l~~l~~~~~~~~~~ 303 (314)
||++.+++.++..+.....+.
T Consensus 81 iG~~~~~l~~l~~g~~~~~~~ 101 (119)
T cd04036 81 LGTVLFDVSKLKLGEKVRVTF 101 (119)
T ss_pred cEEEEEEHHHCCCCCcEEEEE
Confidence 999999999998765544333
No 47
>cd04018 C2C_Ferlin C2 domain third repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.64 E-value=2.3e-15 Score=124.03 Aligned_cols=90 Identities=28% Similarity=0.441 Sum_probs=80.4
Q ss_pred EEEEEEeeecCCCCCCC---------------CCCcEEEEEECCeEeeeeeecCCCCCcccceeEEEec--CCCCcEEEE
Q 021294 208 IKVNVVKGTNLAVRDVM---------------TSDPYVILALGHQTVKTRVIKSNLNPVWNESLMLSIP--ENIPPLKVL 270 (314)
Q Consensus 208 L~V~v~~a~~L~~~d~~---------------~~dPyv~v~l~~~~~kT~~~~~tlnP~w~e~~~f~v~--~~~~~L~i~ 270 (314)
|.|+|++|++|+.++.. .+||||+|.+++++.+|+++++++||+|||+|.|.+. .....|.|+
T Consensus 2 ~~V~V~~A~dLp~~d~~~~~~~~~~~~~~~~~~~DPYV~V~~~g~~~kT~v~~~t~nPvWNE~f~f~v~~p~~~~~l~~~ 81 (151)
T cd04018 2 FIFKIYRAEDLPQMDSGIMANVKKAFLGEKKELVDPYVEVSFAGQKVKTSVKKNSYNPEWNEQIVFPEMFPPLCERIKIQ 81 (151)
T ss_pred eEEEEEEeCCCCccChhhhccceeccccCCCCCcCcEEEEEECCEeeecceEcCCCCCCcceEEEEEeeCCCcCCEEEEE
Confidence 78999999999988743 4799999999999999999999999999999999864 245689999
Q ss_pred EEEcCCCCCCceeEEEEEeCccccccc
Q 021294 271 VYDKDTFTTDDFMGDAEIDIQPLVTAA 297 (314)
Q Consensus 271 v~d~d~~~~dd~iG~~~v~l~~l~~~~ 297 (314)
|||++..+.|++||.+.++|.++....
T Consensus 82 v~D~d~~~~dd~iG~~~l~l~~l~~~~ 108 (151)
T cd04018 82 IRDWDRVGNDDVIGTHFIDLSKISNSG 108 (151)
T ss_pred EEECCCCCCCCEEEEEEEeHHHhccCC
Confidence 999999999999999999999987644
No 48
>cd08385 C2A_Synaptotagmin-1-5-6-9-10 C2A domain first repeat present in Synaptotagmins 1, 5, 6, 9, and 10. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis as do synaptotagmins 5, 6, and 10. It is distinguished from the other synaptotagmins by having an N-glycosylated N-terminus. Synaptotagmins 5, 6, and 10, members of class 3 synaptotagmins, are located primarily in the brain and localized to the active zone and plasma membrane. They is distinguished from the other synaptotagmins by having disulfide bonds at its N-terminus. Synaptotagmin 6 also regulates the acrosome reaction, a unique Ca2+-regulated exocytosis, in sperm. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and
Probab=99.63 E-value=2.3e-15 Score=120.26 Aligned_cols=97 Identities=28% Similarity=0.478 Sum_probs=83.2
Q ss_pred eeeEEEEEEEeeecCCCCCCC-CCCcEEEEEEC---CeEeeeeeecCCCCCcccceeEEEecC---CCCcEEEEEEEcCC
Q 021294 204 FVGLIKVNVVKGTNLAVRDVM-TSDPYVILALG---HQTVKTRVIKSNLNPVWNESLMLSIPE---NIPPLKVLVYDKDT 276 (314)
Q Consensus 204 ~~g~L~V~v~~a~~L~~~d~~-~~dPyv~v~l~---~~~~kT~~~~~tlnP~w~e~~~f~v~~---~~~~L~i~v~d~d~ 276 (314)
..+.|.|+|++|++|+..+.. .+||||++.+. ....+|+++++++||.|||.|.|.+.. ....|.|+|||++.
T Consensus 14 ~~~~L~V~v~~a~~L~~~d~~~~~dpyv~v~l~~~~~~~~kT~v~~~t~nP~wne~f~f~i~~~~l~~~~l~~~V~d~d~ 93 (124)
T cd08385 14 QSNQLTVGIIQAADLPAMDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNETFTFKVPYSELGNKTLVFSVYDFDR 93 (124)
T ss_pred CCCEEEEEEEEeeCCCCccCCCCCCCEEEEEEEcCCCCceecccCcCCCCCceeeeEEEeCCHHHhCCCEEEEEEEeCCC
Confidence 346899999999999988866 88999999983 346799999999999999999999864 24579999999999
Q ss_pred CCCCceeEEEEEeCcccccccccc
Q 021294 277 FTTDDFMGDAEIDIQPLVTAARAC 300 (314)
Q Consensus 277 ~~~dd~iG~~~v~l~~l~~~~~~~ 300 (314)
++.+++||++.++|.++..+....
T Consensus 94 ~~~~~~lG~~~i~l~~~~~~~~~~ 117 (124)
T cd08385 94 FSKHDLIGEVRVPLLTVDLGHVTE 117 (124)
T ss_pred CCCCceeEEEEEecCcccCCCCcc
Confidence 999999999999999987644433
No 49
>cd08391 C2A_C2C_Synaptotagmin_like C2 domain first and third repeat in Synaptotagmin-like proteins. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular
Probab=99.63 E-value=2.8e-15 Score=118.98 Aligned_cols=100 Identities=34% Similarity=0.617 Sum_probs=85.6
Q ss_pred eEEEEEEEeeecCCCCCC-------CCCCcEEEEEECCeEeeeeeecCCCCCcccceeEEEecC-CCCcEEEEEEEcCCC
Q 021294 206 GLIKVNVVKGTNLAVRDV-------MTSDPYVILALGHQTVKTRVIKSNLNPVWNESLMLSIPE-NIPPLKVLVYDKDTF 277 (314)
Q Consensus 206 g~L~V~v~~a~~L~~~d~-------~~~dPyv~v~l~~~~~kT~~~~~tlnP~w~e~~~f~v~~-~~~~L~i~v~d~d~~ 277 (314)
|.|.|+|++|++|+..+. ..+||||++.++++..+|++++++.||.|+|.|.|.+.. ....|.|+|||++..
T Consensus 1 g~l~v~v~~a~~L~~~d~~~~~~~~g~~dPyv~v~~~~~~~kT~~~~~t~~P~W~e~f~~~v~~~~~~~l~i~v~d~~~~ 80 (121)
T cd08391 1 GVLRIHVIEAQDLVAKDKFVGGLVKGKSDPYVIVRVGAQTFKSKVIKENLNPKWNEVYEAVVDEVPGQELEIELFDEDPD 80 (121)
T ss_pred CeEEEEEEEccCCcccccccccCCCCCcCCEEEEEECCEeEEccccCCCCCCcccceEEEEeCCCCCCEEEEEEEecCCC
Confidence 579999999999998764 268999999999999999999999999999999999865 567899999999988
Q ss_pred CCCceeEEEEEeCccccccccccCcccccC
Q 021294 278 TTDDFMGDAEIDIQPLVTAARACETPISMS 307 (314)
Q Consensus 278 ~~dd~iG~~~v~l~~l~~~~~~~~~~~~~~ 307 (314)
.+++||.+.++|.++...... ..|..+.
T Consensus 81 -~~~~iG~~~i~l~~l~~~~~~-~~w~~L~ 108 (121)
T cd08391 81 -KDDFLGRLSIDLGSVEKKGFI-DEWLPLE 108 (121)
T ss_pred -CCCcEEEEEEEHHHhcccCcc-ceEEECc
Confidence 899999999999999865543 3444433
No 50
>cd08387 C2A_Synaptotagmin-8 C2A domain first repeat present in Synaptotagmin 8. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involv
Probab=99.63 E-value=3e-15 Score=119.64 Aligned_cols=99 Identities=29% Similarity=0.520 Sum_probs=85.3
Q ss_pred eeeEEEEEEEeeecCCCCCCC-CCCcEEEEEEC---CeEeeeeeecCCCCCcccceeEEEecC---CCCcEEEEEEEcCC
Q 021294 204 FVGLIKVNVVKGTNLAVRDVM-TSDPYVILALG---HQTVKTRVIKSNLNPVWNESLMLSIPE---NIPPLKVLVYDKDT 276 (314)
Q Consensus 204 ~~g~L~V~v~~a~~L~~~d~~-~~dPyv~v~l~---~~~~kT~~~~~tlnP~w~e~~~f~v~~---~~~~L~i~v~d~d~ 276 (314)
..+.|.|+|++|++|+..+.. .+||||++.+. .+..+|+++++++||.|+|.|.|.+.. ....|.|+|||++.
T Consensus 14 ~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~kT~v~~~t~~P~wne~f~f~v~~~~l~~~~l~i~V~d~~~ 93 (124)
T cd08387 14 DMGILNVKLIQARNLQPRDFSGTADPYCKVRLLPDRSNTKQSKIHKKTLNPEFDESFVFEVPPQELPKRTLEVLLYDFDQ 93 (124)
T ss_pred CCCEEEEEEEEeeCCCCCCCCCCCCCeEEEEEecCCCCcEeCceEcCCCCCCcccEEEEeCCHHHhCCCEEEEEEEECCC
Confidence 357899999999999988866 89999999983 356899999999999999999999865 24579999999999
Q ss_pred CCCCceeEEEEEeCccccccccccCc
Q 021294 277 FTTDDFMGDAEIDIQPLVTAARACET 302 (314)
Q Consensus 277 ~~~dd~iG~~~v~l~~l~~~~~~~~~ 302 (314)
++++++||++.++|.++..+.....|
T Consensus 94 ~~~~~~iG~~~i~l~~~~~~~~~~~W 119 (124)
T cd08387 94 FSRDECIGVVELPLAEVDLSEKLDLW 119 (124)
T ss_pred CCCCceeEEEEEecccccCCCCcceE
Confidence 99999999999999999866544443
No 51
>cd04049 C2_putative_Elicitor-responsive_gene C2 domain present in the putative elicitor-responsive gene. In plants elicitor-responsive proteins are triggered in response to specific elicitor molecules such as glycolproteins, peptides, carbohydrates and lipids. A host of defensive responses are also triggered resulting in localized cell death. Antimicrobial secondary metabolites, such as phytoalexins, or defense-related proteins, including pathogenesis-related (PR) proteins are also produced. There is a single C2 domain present here. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contai
Probab=99.63 E-value=3.6e-15 Score=119.14 Aligned_cols=98 Identities=32% Similarity=0.535 Sum_probs=85.9
Q ss_pred eEEEEEEEeeecCCCCCCC-CCCcEEEEEECCeEeeeeeecC-CCCCcccceeEEEecCC----CCcEEEEEEEcCCCCC
Q 021294 206 GLIKVNVVKGTNLAVRDVM-TSDPYVILALGHQTVKTRVIKS-NLNPVWNESLMLSIPEN----IPPLKVLVYDKDTFTT 279 (314)
Q Consensus 206 g~L~V~v~~a~~L~~~d~~-~~dPyv~v~l~~~~~kT~~~~~-tlnP~w~e~~~f~v~~~----~~~L~i~v~d~d~~~~ 279 (314)
|.|.|+|++|++|+..+.. .+||||++.++.+..+|++.+. +.||.|||.|.|.+... ...|.|+|||++.++.
T Consensus 1 g~L~V~V~~A~~L~~~~~~~~~dpyv~v~~~~~~~~T~~~~~~t~nP~Wne~f~f~v~~~~~~~~~~l~v~V~d~~~~~~ 80 (124)
T cd04049 1 GTLEVLLISAKGLQDTDFLGKIDPYVIIQCRTQERKSKVAKGDGRNPEWNEKFKFTVEYPGWGGDTKLILRIMDKDNFSD 80 (124)
T ss_pred CeEEEEEEecCCCCCCCCCCCcCceEEEEECCEeeeeeEcCCCCCCCcccceEEEEecCcccCCCCEEEEEEEECccCCC
Confidence 5799999999999988766 8999999999999899999875 89999999999999764 4679999999999999
Q ss_pred CceeEEEEEeCccccccccccCcc
Q 021294 280 DDFMGDAEIDIQPLVTAARACETP 303 (314)
Q Consensus 280 dd~iG~~~v~l~~l~~~~~~~~~~ 303 (314)
+++||.+.++|.++..+.....|.
T Consensus 81 d~~iG~~~i~l~~l~~~~~~~~~~ 104 (124)
T cd04049 81 DDFIGEATIHLKGLFEEGVEPGTA 104 (124)
T ss_pred CCeEEEEEEEhHHhhhCCCCcCce
Confidence 999999999999998765544443
No 52
>cd08685 C2_RGS-like C2 domain of the Regulator Of G-Protein Signaling (RGS) family. This CD contains members of the regulator of G-protein signaling (RGS) family. RGS is a GTPase activating protein which inhibits G-protein mediated signal transduction. The protein is largely cytosolic, but G-protein activation leads to translocation of this protein to the plasma membrane. A nuclear form of this protein has also been described, but its sequence has not been identified. There are multiple alternatively spliced transcript variants in this family with some members having additional domains (ex. PDZ and RGS) downstream of the C2 domain. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind pho
Probab=99.63 E-value=2.4e-15 Score=119.36 Aligned_cols=94 Identities=19% Similarity=0.335 Sum_probs=79.9
Q ss_pred eeEEEEEEEeeecCCCCCCCCCCcEEEEEECC-----eEeeeeeecCCCCCcccceeEEEecC--CCCcEEEEEEEcCCC
Q 021294 205 VGLIKVNVVKGTNLAVRDVMTSDPYVILALGH-----QTVKTRVIKSNLNPVWNESLMLSIPE--NIPPLKVLVYDKDTF 277 (314)
Q Consensus 205 ~g~L~V~v~~a~~L~~~d~~~~dPyv~v~l~~-----~~~kT~~~~~tlnP~w~e~~~f~v~~--~~~~L~i~v~d~d~~ 277 (314)
.+.|.|+|++|++|+..+...+||||++.+.. .+.+|++++++.||.|||.|.|.+.. ....|.|.|||++..
T Consensus 11 ~~~L~V~Vi~ar~L~~~~~g~~dpYVkv~l~p~~~~~~~~kT~v~~~t~~P~~nE~F~f~v~~~~~~~~l~v~V~~~~~~ 90 (119)
T cd08685 11 NRKLTLHVLEAKGLRSTNSGTCNSYVKISLSPDKEVRFRQKTSTVPDSANPLFHETFSFDVNERDYQKRLLVTVWNKLSK 90 (119)
T ss_pred CCEEEEEEEEEECCCCCCCCCCCeeEEEEEEeCCCCcceEeCccccCCCCCccccEEEEEcChHHhCCEEEEEEECCCCC
Confidence 46899999999999988855899999999942 45689999999999999999999864 235688999999987
Q ss_pred C-CCceeEEEEEeCcccccccc
Q 021294 278 T-TDDFMGDAEIDIQPLVTAAR 298 (314)
Q Consensus 278 ~-~dd~iG~~~v~l~~l~~~~~ 298 (314)
. .+++||.+.++|.++..+..
T Consensus 91 ~~~~~~lG~~~i~l~~~~~~~~ 112 (119)
T cd08685 91 SRDSGLLGCMSFGVKSIVNQKE 112 (119)
T ss_pred cCCCEEEEEEEecHHHhccCcc
Confidence 6 47899999999999985443
No 53
>cd04019 C2C_MCTP_PRT_plant C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates
Probab=99.62 E-value=4.9e-15 Score=122.28 Aligned_cols=90 Identities=29% Similarity=0.419 Sum_probs=81.2
Q ss_pred EEEEEEEeeecCCCCCCC-CCCcEEEEEECCeEeeeeeecC-CCCCcccceeEEEecC-CCCcEEEEEEEcCCCCCCcee
Q 021294 207 LIKVNVVKGTNLAVRDVM-TSDPYVILALGHQTVKTRVIKS-NLNPVWNESLMLSIPE-NIPPLKVLVYDKDTFTTDDFM 283 (314)
Q Consensus 207 ~L~V~v~~a~~L~~~d~~-~~dPyv~v~l~~~~~kT~~~~~-tlnP~w~e~~~f~v~~-~~~~L~i~v~d~d~~~~dd~i 283 (314)
.|.|+|++|++|+..+.. .+||||++.++++..+|+++.+ ++||.|||.|.|.+.+ ....|.|+|||++..+.+++|
T Consensus 1 ~L~V~Vi~A~~L~~~d~~g~sDPYV~v~l~~~~~kTk~~~~~t~nP~WNE~F~f~v~~~~~~~l~v~V~d~~~~~~dd~l 80 (150)
T cd04019 1 YLRVTVIEAQDLVPSDKNRVPEVFVKAQLGNQVLRTRPSQTRNGNPSWNEELMFVAAEPFEDHLILSVEDRVGPNKDEPL 80 (150)
T ss_pred CEEEEEEEeECCCCCCCCCCCCeEEEEEECCEEeeeEeccCCCCCCcccCcEEEEecCccCCeEEEEEEEecCCCCCCeE
Confidence 478999999999998877 8999999999999999999977 6999999999999865 346899999999998899999
Q ss_pred EEEEEeCcccccc
Q 021294 284 GDAEIDIQPLVTA 296 (314)
Q Consensus 284 G~~~v~l~~l~~~ 296 (314)
|++.++|.++..+
T Consensus 81 G~v~i~L~~l~~~ 93 (150)
T cd04019 81 GRAVIPLNDIERR 93 (150)
T ss_pred EEEEEEHHHCccc
Confidence 9999999998653
No 54
>cd08392 C2A_SLP-3 C2 domain first repeat present in Synaptotagmin-like protein 3. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. Little is known about the expression or localization of Slp3. The C2A domain of Slp3 is Ca2+ dependent. It has been demonstrated that Slp3 promotes dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids
Probab=99.62 E-value=4.4e-15 Score=119.35 Aligned_cols=93 Identities=27% Similarity=0.373 Sum_probs=80.9
Q ss_pred eeeEEEEEEEeeecCCCCCC--CCCCcEEEEEEC-----CeEeeeeeecCCCCCcccceeEEEecC---CCCcEEEEEEE
Q 021294 204 FVGLIKVNVVKGTNLAVRDV--MTSDPYVILALG-----HQTVKTRVIKSNLNPVWNESLMLSIPE---NIPPLKVLVYD 273 (314)
Q Consensus 204 ~~g~L~V~v~~a~~L~~~d~--~~~dPyv~v~l~-----~~~~kT~~~~~tlnP~w~e~~~f~v~~---~~~~L~i~v~d 273 (314)
..+.|.|.|++|++|+..+. ..+||||++++. ..+.+|+++++++||+|||+|.|.+.. ....|.|.|||
T Consensus 13 ~~~~L~V~V~~a~nL~~~d~~~g~~dpYVkv~llp~~~~~~k~kT~v~~~t~nPvfNE~F~f~v~~~~l~~~~L~v~V~~ 92 (128)
T cd08392 13 RTSCLEITIKACRNLAYGDEKKKKCHPYVKVCLLPDKSHNSKRKTAVKKGTVNPVFNETLKYVVEADLLSSRQLQVSVWH 92 (128)
T ss_pred CCCEEEEEEEecCCCCccCCCCCCCCeEEEEEEEeCCcccceeecccccCCCCCccceEEEEEcCHHHhCCcEEEEEEEe
Confidence 34689999999999998875 488999999993 246799999999999999999999865 34689999999
Q ss_pred cCCCCCCceeEEEEEeCcccccc
Q 021294 274 KDTFTTDDFMGDAEIDIQPLVTA 296 (314)
Q Consensus 274 ~d~~~~dd~iG~~~v~l~~l~~~ 296 (314)
++.++.+++||++.|+|.++...
T Consensus 93 ~~~~~~~~~lG~~~i~L~~~~~~ 115 (128)
T cd08392 93 SRTLKRRVFLGEVLIPLADWDFE 115 (128)
T ss_pred CCCCcCcceEEEEEEEcCCcccC
Confidence 99999999999999999988543
No 55
>cd04046 C2_Calpain C2 domain present in Calpain proteins. A single C2 domain is found in calpains (EC 3.4.22.52, EC 3.4.22.53), calcium-dependent, non-lysosomal cysteine proteases. Caplains are classified as belonging to Clan CA by MEROPS and include six families: C1, C2, C10, C12, C28, and C47. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of pic
Probab=99.62 E-value=7.9e-15 Score=117.62 Aligned_cols=89 Identities=25% Similarity=0.478 Sum_probs=80.8
Q ss_pred eEEEEEEEeeecCCCCCCC-CCCcEEEEEECCeEeeeeeecCCCCCcccceeEEEecCCCCcEEEEEEEcCCCCCCceeE
Q 021294 206 GLIKVNVVKGTNLAVRDVM-TSDPYVILALGHQTVKTRVIKSNLNPVWNESLMLSIPENIPPLKVLVYDKDTFTTDDFMG 284 (314)
Q Consensus 206 g~L~V~v~~a~~L~~~d~~-~~dPyv~v~l~~~~~kT~~~~~tlnP~w~e~~~f~v~~~~~~L~i~v~d~d~~~~dd~iG 284 (314)
.+|.|+|++|++|+..+.. .+||||++.++.+..+|++++++.||.|||.|.|.+......|.|+|||++..+ +++||
T Consensus 3 ~~~~V~v~~A~~L~~~d~~g~~dPyv~v~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~l~i~V~d~~~~~-d~~lG 81 (126)
T cd04046 3 VVTQVHVHSAEGLSKQDSGGGADPYVIIKCEGESVRSPVQKDTLSPEFDTQAIFYRKKPRSPIKIQVWNSNLLC-DEFLG 81 (126)
T ss_pred EEEEEEEEeCcCCCCCCCCCCcCccEEEEECCEEEEeCccCCCCCCcccceEEEEecCCCCEEEEEEEECCCCC-CCceE
Confidence 5799999999999988766 899999999999999999999999999999999988776778999999998874 89999
Q ss_pred EEEEeCccccc
Q 021294 285 DAEIDIQPLVT 295 (314)
Q Consensus 285 ~~~v~l~~l~~ 295 (314)
.+.+++.++..
T Consensus 82 ~~~~~l~~~~~ 92 (126)
T cd04046 82 QATLSADPNDS 92 (126)
T ss_pred EEEEecccCCC
Confidence 99999987643
No 56
>cd04020 C2B_SLP_1-2-3-4 C2 domain second repeat present in Synaptotagmin-like proteins 1-4. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involvin
Probab=99.62 E-value=4.3e-15 Score=124.25 Aligned_cols=102 Identities=26% Similarity=0.386 Sum_probs=85.1
Q ss_pred eeeeEEEEEEEeeecCCCCCCC-CCCcEEEEEE-----CCeEeeeeeecCCCCCcccceeEEEecC----CCCcEEEEEE
Q 021294 203 EFVGLIKVNVVKGTNLAVRDVM-TSDPYVILAL-----GHQTVKTRVIKSNLNPVWNESLMLSIPE----NIPPLKVLVY 272 (314)
Q Consensus 203 e~~g~L~V~v~~a~~L~~~d~~-~~dPyv~v~l-----~~~~~kT~~~~~tlnP~w~e~~~f~v~~----~~~~L~i~v~ 272 (314)
...|.|.|+|++|++|+..+.. .+||||++.+ +....+|+++++++||.|||.|.|.+.. ....|.|+||
T Consensus 24 ~~~g~L~V~Vi~A~nL~~~d~~g~~DPYVkv~l~~~~~~~~~~kT~vi~~t~nP~WnE~f~f~~~~~~~l~~~~L~i~V~ 103 (162)
T cd04020 24 PSTGELHVWVKEAKNLPALKSGGTSDSFVKCYLLPDKSKKSKQKTPVVKKSVNPVWNHTFVYDGVSPEDLSQACLELTVW 103 (162)
T ss_pred CCCceEEEEEEeeeCCCCCCCCCCCCCEEEEEEEcCCCCCcceeCCccCCCCCCCCCCEEEEecCCHHHhCCCEEEEEEE
Confidence 3568999999999999998866 8999999988 2357899999999999999999998532 2357999999
Q ss_pred EcCCCCCCceeEEEEEeCccccccccccCccc
Q 021294 273 DKDTFTTDDFMGDAEIDIQPLVTAARACETPI 304 (314)
Q Consensus 273 d~d~~~~dd~iG~~~v~l~~l~~~~~~~~~~~ 304 (314)
|++.++++++||++.+++..+.......+|..
T Consensus 104 d~d~~~~d~~lG~v~i~l~~~~~~~~~~~w~~ 135 (162)
T cd04020 104 DHDKLSSNDFLGGVRLGLGTGKSYGQAVDWMD 135 (162)
T ss_pred eCCCCCCCceEEEEEEeCCccccCCCcccccc
Confidence 99999999999999999999865444444433
No 57
>cd04010 C2B_RasA3 C2 domain second repeat present in RAS p21 protein activator 3 (RasA3). RasA3 are members of GTPase activating protein 1 (GAP1), a Ras-specific GAP, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA3 contains an N-terminal C2 domain, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain
Probab=99.61 E-value=4.5e-15 Score=122.07 Aligned_cols=88 Identities=26% Similarity=0.404 Sum_probs=76.9
Q ss_pred EEEEEEeeecCCCCCCCCCCcEEEEEECC-----eEeeeeeecCCCCCcccceeEEEec------------C----CCCc
Q 021294 208 IKVNVVKGTNLAVRDVMTSDPYVILALGH-----QTVKTRVIKSNLNPVWNESLMLSIP------------E----NIPP 266 (314)
Q Consensus 208 L~V~v~~a~~L~~~d~~~~dPyv~v~l~~-----~~~kT~~~~~tlnP~w~e~~~f~v~------------~----~~~~ 266 (314)
|.|+|++|++|+. ..+.+||||+|.+.. ++.+|+++++++||+|||.|.|.+. . ....
T Consensus 2 L~V~Vi~ArnL~~-~~g~sDPYV~V~l~~~~~k~~~~kT~v~~~t~nP~wNE~F~F~v~~~~~~~~~~~~~~~~~~~~~~ 80 (148)
T cd04010 2 LSVRVIECSDLAL-KNGTCDPYASVTLIYSNKKQDTKRTKVKKKTNNPQFDEAFYFDVTIDSSPEKKQFEMPEEDAEKLE 80 (148)
T ss_pred EEEEEEeCcCCCC-CCCCCCceEEEEEeCCcccCcccCCccEeCCCCCccceEEEEEEecccccccccccCCcccccEEE
Confidence 7899999999988 334899999999965 5789999999999999999999984 1 1246
Q ss_pred EEEEEEEcCCCCCCceeEEEEEeCcccccc
Q 021294 267 LKVLVYDKDTFTTDDFMGDAEIDIQPLVTA 296 (314)
Q Consensus 267 L~i~v~d~d~~~~dd~iG~~~v~l~~l~~~ 296 (314)
|.|.|||++..+.++|||++.|+|..+...
T Consensus 81 L~i~V~d~~~~~~ddfLG~v~i~l~~l~~~ 110 (148)
T cd04010 81 LRVDLWHASMGGGDVFLGEVRIPLRGLDLQ 110 (148)
T ss_pred EEEEEEcCCCCCCCceeEEEEEeccccccc
Confidence 899999999988999999999999998865
No 58
>cd08407 C2B_Synaptotagmin-13 C2 domain second repeat present in Synaptotagmin 13. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recy
Probab=99.61 E-value=3.2e-15 Score=121.44 Aligned_cols=89 Identities=25% Similarity=0.432 Sum_probs=77.7
Q ss_pred eeeEEEEEEEeeecCCCCCC---CCCCcEEEEEECC-----eEeeeeeecCCCCCcccceeEEEecC---CCCcEEEEEE
Q 021294 204 FVGLIKVNVVKGTNLAVRDV---MTSDPYVILALGH-----QTVKTRVIKSNLNPVWNESLMLSIPE---NIPPLKVLVY 272 (314)
Q Consensus 204 ~~g~L~V~v~~a~~L~~~d~---~~~dPyv~v~l~~-----~~~kT~~~~~tlnP~w~e~~~f~v~~---~~~~L~i~v~ 272 (314)
..+.|.|.|++|++|+..+. ..+||||++++.. .+.+|+++++++||+|||.|.|.++. ....|.|+||
T Consensus 13 ~~~~L~V~V~karnL~~~d~~~~~~~DpYVKv~l~~~~~k~~kkkT~v~k~t~nPvfNE~f~F~v~~~~L~~~~L~~~V~ 92 (138)
T cd08407 13 AANRLLVVVIKAKNLHSDQLKLLLGIDVSVKVTLKHQNAKLKKKQTKRAKHKINPVWNEMIMFELPSELLAASSVELEVL 92 (138)
T ss_pred CCCeEEEEEEEecCCCccccCCCCCCCeEEEEEEEcCCcccceeccceeeCCCCCccccEEEEECCHHHhCccEEEEEEE
Confidence 45789999999999998873 2589999999843 25689999999999999999999975 3467999999
Q ss_pred EcCCCCCCceeEEEEEeCcc
Q 021294 273 DKDTFTTDDFMGDAEIDIQP 292 (314)
Q Consensus 273 d~d~~~~dd~iG~~~v~l~~ 292 (314)
|++.++++++||++.+++..
T Consensus 93 d~d~~~~~d~iG~v~lg~~~ 112 (138)
T cd08407 93 NQDSPGQSLPLGRCSLGLHT 112 (138)
T ss_pred eCCCCcCcceeceEEecCcC
Confidence 99999999999999999975
No 59
>cd04033 C2_NEDD4_NEDD4L C2 domain present in the Human neural precursor cell-expressed, developmentally down-regulated 4 (NEDD4) and NEDD4-like (NEDD4L/NEDD42). Nedd4 and Nedd4-2 are two of the nine members of the Human Nedd4 family. All vertebrates appear to have both Nedd4 and Nedd4-2 genes. They are thought to participate in the regulation of epithelial Na+ channel (ENaC) activity. They also have identical specificity for ubiquitin conjugating enzymes (E2). Nedd4 and Nedd4-2 are composed of a C2 domain, 2-4 WW domains, and a ubiquitin ligase Hect domain. Their WW domains can bind PPxY (PY) or LPSY motifs, and in vitro studies suggest that WW3 and WW4 of both proteins bind PY motifs in the key substrates, with WW3 generally exhibiting higher affinity. Most Nedd4 family members, especially Nedd4-2, also have multiple splice variants, which might play different roles in regulating their substrates. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.60 E-value=8.4e-15 Score=118.38 Aligned_cols=92 Identities=36% Similarity=0.681 Sum_probs=81.9
Q ss_pred EEEEEEEeeecCCCCCCC-CCCcEEEEEECCe-------EeeeeeecCCCCCcccceeEEEecCCCCcEEEEEEEcCCCC
Q 021294 207 LIKVNVVKGTNLAVRDVM-TSDPYVILALGHQ-------TVKTRVIKSNLNPVWNESLMLSIPENIPPLKVLVYDKDTFT 278 (314)
Q Consensus 207 ~L~V~v~~a~~L~~~d~~-~~dPyv~v~l~~~-------~~kT~~~~~tlnP~w~e~~~f~v~~~~~~L~i~v~d~d~~~ 278 (314)
.|.|+|++|++|+..+.. .+||||++.+... ..+|+++++++||.|||.|.|.+......|.|+|||++.++
T Consensus 1 ~L~v~Vi~a~~L~~~d~~~~~Dpyv~v~~~~~~~~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~l~~~v~d~~~~~ 80 (133)
T cd04033 1 ILRVKVLAGIDLAKKDIFGASDPYVKISLYDPDGNGEIDSVQTKTIKKTLNPKWNEEFFFRVNPREHRLLFEVFDENRLT 80 (133)
T ss_pred CEEEEEEEeECCCcccCCCCcCcEEEEEEECCCCCCcccceeeeEEcCCCCCcEeeEEEEEEcCCCCEEEEEEEECCCCC
Confidence 378999999999988876 8999999999654 46899999999999999999999775678999999999999
Q ss_pred CCceeEEEEEeCcccccccc
Q 021294 279 TDDFMGDAEIDIQPLVTAAR 298 (314)
Q Consensus 279 ~dd~iG~~~v~l~~l~~~~~ 298 (314)
.+++||++.+++.++.....
T Consensus 81 ~~~~iG~~~i~l~~l~~~~~ 100 (133)
T cd04033 81 RDDFLGQVEVPLNNLPTETP 100 (133)
T ss_pred CCCeeEEEEEEHHHCCCcCc
Confidence 99999999999999886543
No 60
>cd04031 C2A_RIM1alpha C2 domain first repeat contained in Rab3-interacting molecule (RIM) proteins. RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as
Probab=99.60 E-value=8.5e-15 Score=116.98 Aligned_cols=90 Identities=30% Similarity=0.470 Sum_probs=79.1
Q ss_pred eeeEEEEEEEeeecCCCCCCC-CCCcEEEEEECC-----eEeeeeeecCCCCCcccceeEEEecC----CCCcEEEEEEE
Q 021294 204 FVGLIKVNVVKGTNLAVRDVM-TSDPYVILALGH-----QTVKTRVIKSNLNPVWNESLMLSIPE----NIPPLKVLVYD 273 (314)
Q Consensus 204 ~~g~L~V~v~~a~~L~~~d~~-~~dPyv~v~l~~-----~~~kT~~~~~tlnP~w~e~~~f~v~~----~~~~L~i~v~d 273 (314)
..+.|.|+|++|++|+..+.. .+||||++.+.. ...+|+++++++||.|||.|.|.+.. ....|.|+|||
T Consensus 14 ~~~~L~V~vi~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~~l~~~~l~~~V~d 93 (125)
T cd04031 14 VTSQLIVTVLQARDLPPRDDGSLRNPYVKVYLLPDRSEKSKRRTKTVKKTLNPEWNQTFEYSNVRRETLKERTLEVTVWD 93 (125)
T ss_pred CCCEEEEEEEEecCCCCcCCCCCCCCEEEEEEccCCCccccccccccCCCCCCccccEEEEcccCHHHhCCCEEEEEEEe
Confidence 447899999999999988776 899999999953 56799999999999999999998633 34679999999
Q ss_pred cCCCCCCceeEEEEEeCccc
Q 021294 274 KDTFTTDDFMGDAEIDIQPL 293 (314)
Q Consensus 274 ~d~~~~dd~iG~~~v~l~~l 293 (314)
++..+.+++||++.++|.+.
T Consensus 94 ~~~~~~~~~iG~~~i~l~~~ 113 (125)
T cd04031 94 YDRDGENDFLGEVVIDLADA 113 (125)
T ss_pred CCCCCCCcEeeEEEEecccc
Confidence 99999999999999999984
No 61
>cd08388 C2A_Synaptotagmin-4-11 C2A domain first repeat present in Synaptotagmins 4 and 11. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmins 4 and 11, class 4 synaptotagmins, are located in the brain. Their functions are unknown. They are distinguished from the other synaptotagmins by having and Asp to Ser substitution in their C2A domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence
Probab=99.60 E-value=9.2e-15 Score=117.57 Aligned_cols=92 Identities=32% Similarity=0.451 Sum_probs=78.7
Q ss_pred eeEEEEEEEeeecCCCCCC--CCCCcEEEEEEC---CeEeeeeeecCCCCCcccceeEEE-ecC---CCCcEEEEEEEcC
Q 021294 205 VGLIKVNVVKGTNLAVRDV--MTSDPYVILALG---HQTVKTRVIKSNLNPVWNESLMLS-IPE---NIPPLKVLVYDKD 275 (314)
Q Consensus 205 ~g~L~V~v~~a~~L~~~d~--~~~dPyv~v~l~---~~~~kT~~~~~tlnP~w~e~~~f~-v~~---~~~~L~i~v~d~d 275 (314)
.+.|.|+|++|++|+..+. ..+||||++.+. .++.+|+++++++||.|||+|.|. +.. ....|.|+|||++
T Consensus 15 ~~~L~V~Vi~a~~L~~~~~~~~~~DpyV~v~l~~~~~~~~kT~v~~~t~nP~wnE~F~f~~~~~~~~~~~~L~~~V~d~d 94 (128)
T cd08388 15 KKALLVNIIECRDLPAMDEQSGTSDPYVKLQLLPEKEHKVKTRVLRKTRNPVYDETFTFYGIPYNQLQDLSLHFAVLSFD 94 (128)
T ss_pred CCEEEEEEEEeECCCCCCCCCCCcCCEEEEEEeCCcCceeeccEEcCCCCCceeeEEEEcccCHHHhCCCEEEEEEEEcC
Confidence 4689999999999998775 378999999984 456799999999999999999994 432 3356999999999
Q ss_pred CCCCCceeEEEEEeCcccccc
Q 021294 276 TFTTDDFMGDAEIDIQPLVTA 296 (314)
Q Consensus 276 ~~~~dd~iG~~~v~l~~l~~~ 296 (314)
.++++++||++.++|.++-..
T Consensus 95 ~~~~d~~lG~~~i~L~~l~~~ 115 (128)
T cd08388 95 RYSRDDVIGEVVCPLAGADLL 115 (128)
T ss_pred CCCCCceeEEEEEeccccCCC
Confidence 999999999999999988543
No 62
>cd04030 C2C_KIAA1228 C2 domain third repeat present in uncharacterized human KIAA1228-like proteins. KIAA proteins are uncharacterized human proteins. They were compiled by the Kazusa mammalian cDNA project which identified more than 2000 human genes. They are identified by 4 digit codes that precede the KIAA designation. Many KIAA genes are still functionally uncharacterized including KIAA1228. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1
Probab=99.60 E-value=1.1e-14 Score=116.75 Aligned_cols=96 Identities=31% Similarity=0.377 Sum_probs=82.6
Q ss_pred eeeEEEEEEEeeecCCCCCCC-CCCcEEEEEEC-----CeEeeeeeecCCCCCcccceeEEEecC---CCCcEEEEEEEc
Q 021294 204 FVGLIKVNVVKGTNLAVRDVM-TSDPYVILALG-----HQTVKTRVIKSNLNPVWNESLMLSIPE---NIPPLKVLVYDK 274 (314)
Q Consensus 204 ~~g~L~V~v~~a~~L~~~d~~-~~dPyv~v~l~-----~~~~kT~~~~~tlnP~w~e~~~f~v~~---~~~~L~i~v~d~ 274 (314)
..+.|.|+|++|++|+..+.. .+||||++.+. ....+|++++++.||.|||+|.|.+.. ....|.|.|||+
T Consensus 14 ~~~~L~V~vi~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~~~nP~wne~f~f~i~~~~l~~~~l~i~v~~~ 93 (127)
T cd04030 14 QRQKLIVTVHKCRNLPPCDSSDIPDPYVRLYLLPDKSKSTRRKTSVKKDNLNPVFDETFEFPVSLEELKRRTLDVAVKNS 93 (127)
T ss_pred CCCEEEEEEEEEECCCCccCCCCCCceEEEEEEcCCCCCceEecccccCCCCCEECeEEEEecCHHHhcCCEEEEEEEEC
Confidence 347899999999999998876 89999999984 467899999999999999999999854 246799999999
Q ss_pred CCC--CCCceeEEEEEeCccccccccc
Q 021294 275 DTF--TTDDFMGDAEIDIQPLVTAARA 299 (314)
Q Consensus 275 d~~--~~dd~iG~~~v~l~~l~~~~~~ 299 (314)
+.+ +.+++||++.++|.++..+...
T Consensus 94 ~~~~~~~~~~iG~~~i~l~~l~~~~~~ 120 (127)
T cd04030 94 KSFLSREKKLLGQVLIDLSDLDLSKGF 120 (127)
T ss_pred CcccCCCCceEEEEEEecccccccCCc
Confidence 875 6899999999999998655443
No 63
>cd08386 C2A_Synaptotagmin-7 C2A domain first repeat present in Synaptotagmin 7. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves
Probab=99.60 E-value=1.2e-14 Score=116.14 Aligned_cols=96 Identities=26% Similarity=0.478 Sum_probs=82.0
Q ss_pred eeEEEEEEEeeecCCCCCCC-CCCcEEEEEE---CCeEeeeeeecCCCCCcccceeEEEecC----CCCcEEEEEEEcCC
Q 021294 205 VGLIKVNVVKGTNLAVRDVM-TSDPYVILAL---GHQTVKTRVIKSNLNPVWNESLMLSIPE----NIPPLKVLVYDKDT 276 (314)
Q Consensus 205 ~g~L~V~v~~a~~L~~~d~~-~~dPyv~v~l---~~~~~kT~~~~~tlnP~w~e~~~f~v~~----~~~~L~i~v~d~d~ 276 (314)
.+.|.|+|++|++|+..+.. .+||||++.+ +.+..+|+++++++||.|||.|.|.+.. ....|.|+|||++.
T Consensus 15 ~~~L~v~v~~a~~L~~~d~~~~~dpyv~v~~~~~~~~~~kT~v~~~t~~P~Wne~f~f~~~~~~~l~~~~l~~~v~d~d~ 94 (125)
T cd08386 15 ESTLTLKILKAVELPAKDFSGTSDPFVKIYLLPDKKHKLETKVKRKNLNPHWNETFLFEGFPYEKLQQRVLYLQVLDYDR 94 (125)
T ss_pred CCEEEEEEEEecCCCCccCCCCCCceEEEEECCCCCcceeeeeecCCCCCccceeEEEcccCHHHhCCCEEEEEEEeCCC
Confidence 46899999999999988866 8999999998 3467899999999999999999997532 23569999999999
Q ss_pred CCCCceeEEEEEeCcccccccccc
Q 021294 277 FTTDDFMGDAEIDIQPLVTAARAC 300 (314)
Q Consensus 277 ~~~dd~iG~~~v~l~~l~~~~~~~ 300 (314)
.+.+++||++.++|.++..+....
T Consensus 95 ~~~~~~iG~~~i~l~~l~~~~~~~ 118 (125)
T cd08386 95 FSRNDPIGEVSLPLNKVDLTEEQT 118 (125)
T ss_pred CcCCcEeeEEEEecccccCCCCcc
Confidence 999999999999999987654433
No 64
>cd08382 C2_Smurf-like C2 domain present in Smad ubiquitination-related factor (Smurf)-like proteins. A single C2 domain is found in Smurf proteins, C2-WW-HECT-domain E3s, which play an important role in the downregulation of the TGF-beta signaling pathway. Smurf proteins also regulate cell shape, motility, and polarity by degrading small guanosine triphosphatases (GTPases). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are
Probab=99.60 E-value=1.1e-14 Score=116.21 Aligned_cols=89 Identities=27% Similarity=0.551 Sum_probs=79.7
Q ss_pred EEEEEEeeecCCCCCCC-CCCcEEEEEEC-CeEeeeeeecCCCCCcccceeEEEecCCCCcEEEEEEEcCCCCC--Ccee
Q 021294 208 IKVNVVKGTNLAVRDVM-TSDPYVILALG-HQTVKTRVIKSNLNPVWNESLMLSIPENIPPLKVLVYDKDTFTT--DDFM 283 (314)
Q Consensus 208 L~V~v~~a~~L~~~d~~-~~dPyv~v~l~-~~~~kT~~~~~tlnP~w~e~~~f~v~~~~~~L~i~v~d~d~~~~--dd~i 283 (314)
|.|+|++|++|+..+.. .+||||++.++ .+.++|+++++++||.|||.|.|.+.. ...|.|+|||++.++. +++|
T Consensus 2 l~v~v~~A~~L~~~~~~~~~dpyv~v~~~~~~~~kT~v~~~t~nP~Wne~f~~~~~~-~~~l~i~V~d~~~~~~~~d~~l 80 (123)
T cd08382 2 VRLTVLCADGLAKRDLFRLPDPFAVITVDGGQTHSTDVAKKTLDPKWNEHFDLTVGP-SSIITIQVFDQKKFKKKDQGFL 80 (123)
T ss_pred eEEEEEEecCCCccCCCCCCCcEEEEEECCccceEccEEcCCCCCcccceEEEEeCC-CCEEEEEEEECCCCCCCCCceE
Confidence 78999999999988876 89999999996 778899999999999999999999966 5789999999998875 5799
Q ss_pred EEEEEeCccccccc
Q 021294 284 GDAEIDIQPLVTAA 297 (314)
Q Consensus 284 G~~~v~l~~l~~~~ 297 (314)
|++.+++.++....
T Consensus 81 G~~~i~l~~l~~~~ 94 (123)
T cd08382 81 GCVRIRANAVLPLK 94 (123)
T ss_pred eEEEEEHHHccccC
Confidence 99999999987544
No 65
>cd04015 C2_plant_PLD C2 domain present in plant phospholipase D (PLD). PLD hydrolyzes terminal phosphodiester bonds in diester glycerophospholipids resulting in the degradation of phospholipids. In vitro PLD transfers phosphatidic acid to primary alcohols. In plants PLD plays a role in germination, seedling growth, phosphatidylinositol metabolism, and changes in phospholipid composition. There is a single Ca(2+)/phospholipid-binding C2 domain in PLD. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins whic
Probab=99.59 E-value=1.8e-14 Score=119.98 Aligned_cols=103 Identities=28% Similarity=0.422 Sum_probs=85.9
Q ss_pred eeeeEEEEEEEeeecCCCCCC-----------------------------C--CCCcEEEEEECCeE-eeeeeecCCCCC
Q 021294 203 EFVGLIKVNVVKGTNLAVRDV-----------------------------M--TSDPYVILALGHQT-VKTRVIKSNLNP 250 (314)
Q Consensus 203 e~~g~L~V~v~~a~~L~~~d~-----------------------------~--~~dPyv~v~l~~~~-~kT~~~~~tlnP 250 (314)
-.-|.|.|+|++|++|+.+|. . .+||||++.+++.. .+|++++++.||
T Consensus 4 llhG~L~v~I~eA~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~sDPYv~V~l~~~~~~rT~v~~~~~nP 83 (158)
T cd04015 4 LLHGTLDVTIYEADNLPNMDMFSEKLRRFFSKLVGCSEPTLKRPSSHRHVGKITSDPYATVDLAGARVARTRVIENSENP 83 (158)
T ss_pred EEeeeeEEEEEEeccCCCcccccchhhHHHHHHHhhcccccccccccccCCCCCcCeEEEEEECCeEeeEEEEeCCCCCC
Confidence 355899999999999998772 1 57999999998754 699999999999
Q ss_pred cccceeEEEecCCCCcEEEEEEEcCCCCCCceeEEEEEeCccccccccccCccccc
Q 021294 251 VWNESLMLSIPENIPPLKVLVYDKDTFTTDDFMGDAEIDIQPLVTAARACETPISM 306 (314)
Q Consensus 251 ~w~e~~~f~v~~~~~~L~i~v~d~d~~~~dd~iG~~~v~l~~l~~~~~~~~~~~~~ 306 (314)
.|||.|.|.+......|.|+|||++.++ +++||.+.+++.++..+.....|..+.
T Consensus 84 ~WnE~F~~~~~~~~~~l~~~V~d~d~~~-~~~IG~~~i~l~~l~~g~~~~~w~~L~ 138 (158)
T cd04015 84 VWNESFHIYCAHYASHVEFTVKDNDVVG-AQLIGRAYIPVEDLLSGEPVEGWLPIL 138 (158)
T ss_pred ccceEEEEEccCCCCEEEEEEEeCCCcC-CcEEEEEEEEhHHccCCCCcceEEECc
Confidence 9999999998766678999999999875 589999999999998766554444443
No 66
>cd04009 C2B_Munc13-like C2 domain second repeat in Munc13 (mammalian uncoordinated)-like proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, s
Probab=99.59 E-value=9.5e-15 Score=118.27 Aligned_cols=93 Identities=29% Similarity=0.399 Sum_probs=81.3
Q ss_pred eeeEEEEEEEeeecCCCCCCC-CCCcEEEEEEC-------CeEeeeeeecCCCCCcccceeEEEecC-----CCCcEEEE
Q 021294 204 FVGLIKVNVVKGTNLAVRDVM-TSDPYVILALG-------HQTVKTRVIKSNLNPVWNESLMLSIPE-----NIPPLKVL 270 (314)
Q Consensus 204 ~~g~L~V~v~~a~~L~~~d~~-~~dPyv~v~l~-------~~~~kT~~~~~tlnP~w~e~~~f~v~~-----~~~~L~i~ 270 (314)
..+.|.|+|++|++|+..+.. .+||||++.+. ....+|+++++++||+|||.|.|.+.. ....|.|+
T Consensus 14 ~~~~L~V~Vi~A~~L~~~~~~g~~dPyv~v~l~~~~~~~~~~~~kT~v~~~t~nP~wnE~f~f~i~~~~~~~~~~~l~~~ 93 (133)
T cd04009 14 SEQSLRVEILNARNLLPLDSNGSSDPFVKVELLPRHLFPDVPTPKTQVKKKTLFPLFDESFEFNVPPEQCSVEGALLLFT 93 (133)
T ss_pred CCCEEEEEEEEeeCCCCcCCCCCCCCEEEEEEECCCcCccccccccccCcCCCCCccCCEEEEEechhhcccCCCEEEEE
Confidence 346899999999999988765 89999999984 356899999999999999999999864 24579999
Q ss_pred EEEcCCCCCCceeEEEEEeCcccccc
Q 021294 271 VYDKDTFTTDDFMGDAEIDIQPLVTA 296 (314)
Q Consensus 271 v~d~d~~~~dd~iG~~~v~l~~l~~~ 296 (314)
|||++.++++++||++.++|.++...
T Consensus 94 V~d~d~~~~d~~iG~~~i~l~~l~~~ 119 (133)
T cd04009 94 VKDYDLLGSNDFEGEAFLPLNDIPGV 119 (133)
T ss_pred EEecCCCCCCcEeEEEEEeHHHCCcc
Confidence 99999999999999999999998743
No 67
>cd08378 C2B_MCTP_PRT_plant C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate
Probab=99.59 E-value=7.9e-15 Score=116.80 Aligned_cols=86 Identities=34% Similarity=0.531 Sum_probs=78.0
Q ss_pred EEEEEEEeeecCCCCCCCCCCcEEEEEECCeEeeeeeecCCCCCcccceeEEEecC-CCCcEEEEEEEcCCCCCCceeEE
Q 021294 207 LIKVNVVKGTNLAVRDVMTSDPYVILALGHQTVKTRVIKSNLNPVWNESLMLSIPE-NIPPLKVLVYDKDTFTTDDFMGD 285 (314)
Q Consensus 207 ~L~V~v~~a~~L~~~d~~~~dPyv~v~l~~~~~kT~~~~~tlnP~w~e~~~f~v~~-~~~~L~i~v~d~d~~~~dd~iG~ 285 (314)
.|.|+|++|++|+.. .+||||++.++.+..+|+++++++||.|||+|.|.+.. ....|.|+|||++.. .+++||+
T Consensus 1 ~L~V~Vi~a~~L~~~---~~Dpyv~v~l~~~~~kT~v~~~t~nP~Wne~F~f~~~~~~~~~L~~~v~d~d~~-~~~~lG~ 76 (121)
T cd08378 1 YLYVRVVKARGLPAN---SNDPVVEVKLGNYKGSTKAIERTSNPEWNQVFAFSKDRLQGSTLEVSVWDKDKA-KDDFLGG 76 (121)
T ss_pred CEEEEEEEecCCCcc---cCCCEEEEEECCccccccccCCCCCCccceEEEEEcCCCcCCEEEEEEEeCCCC-cCceeee
Confidence 378999999999887 68999999999999999999999999999999999865 567899999999987 7899999
Q ss_pred EEEeCcccccc
Q 021294 286 AEIDIQPLVTA 296 (314)
Q Consensus 286 ~~v~l~~l~~~ 296 (314)
+.++|.++...
T Consensus 77 ~~i~l~~l~~~ 87 (121)
T cd08378 77 VCFDLSEVPTR 87 (121)
T ss_pred EEEEhHhCcCC
Confidence 99999998653
No 68
>cd08400 C2_Ras_p21A1 C2 domain present in RAS p21 protein activator 1 (RasA1). RasA1 is a GAP1 (GTPase activating protein 1), a Ras-specific GAP member, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA1 contains a C2 domain, a Ras-GAP domain, a pleckstrin homology (PH)-like domain, a SH3 domain, and 2 SH2 domains. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficki
Probab=99.58 E-value=2.6e-14 Score=114.63 Aligned_cols=98 Identities=19% Similarity=0.386 Sum_probs=80.3
Q ss_pred eeeEEEEEEEeeecCCCCCCCCCCcEEEEEECCe-EeeeeeecCCCCCcccceeEEEecC-CCCcEEEEEEEcCCCCCCc
Q 021294 204 FVGLIKVNVVKGTNLAVRDVMTSDPYVILALGHQ-TVKTRVIKSNLNPVWNESLMLSIPE-NIPPLKVLVYDKDTFTTDD 281 (314)
Q Consensus 204 ~~g~L~V~v~~a~~L~~~d~~~~dPyv~v~l~~~-~~kT~~~~~tlnP~w~e~~~f~v~~-~~~~L~i~v~d~d~~~~dd 281 (314)
+...|.|+|++|++|+..+ .+||||++.+++. ..+|++. +++||.|||.|.|.+.. ....|.|.|||++..++++
T Consensus 2 ~~~~L~V~Vi~A~~L~~~~--~~DPYv~v~l~~~~~~kT~v~-~~~nP~WnE~f~f~~~~~~~~~l~v~v~d~~~~~~d~ 78 (126)
T cd08400 2 QVRSLQLNVLEAHKLPVKH--VPHPYCVISLNEVKVARTKVR-EGPNPVWSEEFVFDDLPPDVNSFTISLSNKAKRSKDS 78 (126)
T ss_pred ceeEEEEEEEEeeCCCCCC--CCCeeEEEEECCEeEEEeecC-CCCCCccCCEEEEecCCCCcCEEEEEEEECCCCCCCC
Confidence 3457999999999998764 6899999999874 4688874 68999999999998654 3357899999999999999
Q ss_pred eeEEEEEeCccccccccccCccc
Q 021294 282 FMGDAEIDIQPLVTAARACETPI 304 (314)
Q Consensus 282 ~iG~~~v~l~~l~~~~~~~~~~~ 304 (314)
+||++.++|..+..+.....|..
T Consensus 79 ~iG~v~i~l~~l~~~~~~~~W~~ 101 (126)
T cd08400 79 EIAEVTVQLSKLQNGQETDEWYP 101 (126)
T ss_pred eEEEEEEEHhHccCCCcccEeEE
Confidence 99999999999887655443333
No 69
>cd08521 C2A_SLP C2 domain first repeat present in Synaptotagmin-like proteins. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into
Probab=99.58 E-value=1.7e-14 Score=114.84 Aligned_cols=95 Identities=32% Similarity=0.487 Sum_probs=81.5
Q ss_pred eeeEEEEEEEeeecCCCCC-CC-CCCcEEEEEEC-----CeEeeeeeecCCCCCcccceeEEEecC---CCCcEEEEEEE
Q 021294 204 FVGLIKVNVVKGTNLAVRD-VM-TSDPYVILALG-----HQTVKTRVIKSNLNPVWNESLMLSIPE---NIPPLKVLVYD 273 (314)
Q Consensus 204 ~~g~L~V~v~~a~~L~~~d-~~-~~dPyv~v~l~-----~~~~kT~~~~~tlnP~w~e~~~f~v~~---~~~~L~i~v~d 273 (314)
..+.|.|+|++|++|+..+ .. .+||||++.+. ....+|+++++++||.|||.|.|.+.. ....|.|+|||
T Consensus 12 ~~~~L~V~v~~a~~L~~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~t~~P~wne~f~f~i~~~~l~~~~l~i~v~d 91 (123)
T cd08521 12 KTGSLEVHIKECRNLAYADEKKKRSNPYVKVYLLPDKSKQSKRKTSVKKNTTNPVFNETLKYHISKSQLETRTLQLSVWH 91 (123)
T ss_pred CCCEEEEEEEEecCCCCcCCCCCCCCcEEEEEEecCCCcCceeeccccCCCCCCcccceEEEeCCHHHhCCCEEEEEEEe
Confidence 3478999999999999887 44 89999999883 146799999999999999999999865 24679999999
Q ss_pred cCCCCCCceeEEEEEeCcccccccc
Q 021294 274 KDTFTTDDFMGDAEIDIQPLVTAAR 298 (314)
Q Consensus 274 ~d~~~~dd~iG~~~v~l~~l~~~~~ 298 (314)
++.++++++||++.++|.++..+..
T Consensus 92 ~~~~~~~~~iG~~~i~l~~l~~~~~ 116 (123)
T cd08521 92 HDRFGRNTFLGEVEIPLDSWDLDSQ 116 (123)
T ss_pred CCCCcCCceeeEEEEecccccccCC
Confidence 9999999999999999999964443
No 70
>cd08406 C2B_Synaptotagmin-12 C2 domain second repeat present in Synaptotagmin 12. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 12, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 13, do not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycl
Probab=99.58 E-value=6.4e-15 Score=119.57 Aligned_cols=89 Identities=28% Similarity=0.362 Sum_probs=77.3
Q ss_pred eeEEEEEEEeeecCCCCCCC-CCCcEEEEEEC---C--eEeeeeeecCCCCCcccceeEEEecC---CCCcEEEEEEEcC
Q 021294 205 VGLIKVNVVKGTNLAVRDVM-TSDPYVILALG---H--QTVKTRVIKSNLNPVWNESLMLSIPE---NIPPLKVLVYDKD 275 (314)
Q Consensus 205 ~g~L~V~v~~a~~L~~~d~~-~~dPyv~v~l~---~--~~~kT~~~~~tlnP~w~e~~~f~v~~---~~~~L~i~v~d~d 275 (314)
.+.|.|+|++|++|+..+.. .+||||++++. . .+.+|+++++++||+|||+|.|.++. ....|.|+|||++
T Consensus 14 ~~~L~V~Vi~A~nL~~~~~~g~~DpyVkv~l~~~~~~~~k~kT~v~k~t~nP~~nE~f~F~v~~~~l~~~~l~~~V~~~d 93 (136)
T cd08406 14 AERLTVVVVKARNLVWDNGKTTADPFVKVYLLQDGRKISKKKTSVKRDDTNPIFNEAMIFSVPAIVLQDLSLRVTVAEST 93 (136)
T ss_pred CCEEEEEEEEeeCCCCccCCCCCCeEEEEEEEeCCccccccCCccccCCCCCeeceeEEEECCHHHhCCcEEEEEEEeCC
Confidence 46899999999999988865 89999999992 2 25689999999999999999999865 4567999999999
Q ss_pred CCCCCceeEEEEEeCccc
Q 021294 276 TFTTDDFMGDAEIDIQPL 293 (314)
Q Consensus 276 ~~~~dd~iG~~~v~l~~l 293 (314)
.++++++||++.+.....
T Consensus 94 ~~~~~~~iG~v~lg~~~~ 111 (136)
T cd08406 94 EDGKTPNVGHVIIGPAAS 111 (136)
T ss_pred CCCCCCeeEEEEECCCCC
Confidence 999999999999987654
No 71
>cd08675 C2B_RasGAP C2 domain second repeat of Ras GTPase activating proteins (GAPs). RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin
Probab=99.57 E-value=1.8e-14 Score=117.22 Aligned_cols=98 Identities=26% Similarity=0.413 Sum_probs=82.8
Q ss_pred EEEEEEeeecCCCCCCCCCCcEEEEEEC----CeEeeeeeecCCCCCcccceeEEEecCC----------------CCcE
Q 021294 208 IKVNVVKGTNLAVRDVMTSDPYVILALG----HQTVKTRVIKSNLNPVWNESLMLSIPEN----------------IPPL 267 (314)
Q Consensus 208 L~V~v~~a~~L~~~d~~~~dPyv~v~l~----~~~~kT~~~~~tlnP~w~e~~~f~v~~~----------------~~~L 267 (314)
|.|+|++|++|+......+||||++.++ .+..+|++++++.||.|+|.|.|.+... ...|
T Consensus 1 L~V~Vi~A~~L~~~~~g~~dPyv~v~~~~~~~~~~~rT~vv~~t~nP~Wne~f~f~~~~~~~~~~~~~~~~~~~~~~~~l 80 (137)
T cd08675 1 LSVRVLECRDLALKSNGTCDPFARVTLNYSSKTDTKRTKVKKKTNNPRFDEAFYFELTIGFSYEKKSFKVEEEDLEKSEL 80 (137)
T ss_pred CEEEEEEccCCCcccCCCCCcEEEEEEecCCcCCeeccceeeCCCCCCcceEEEEEccccccccccccccccccccccEE
Confidence 5789999999987733389999999997 7789999999999999999999997552 3579
Q ss_pred EEEEEEcCCCCCCceeEEEEEeCccccccccccCcccc
Q 021294 268 KVLVYDKDTFTTDDFMGDAEIDIQPLVTAARACETPIS 305 (314)
Q Consensus 268 ~i~v~d~d~~~~dd~iG~~~v~l~~l~~~~~~~~~~~~ 305 (314)
.|+|||++..+.+++||++.++|.++........|..+
T Consensus 81 ~i~V~d~~~~~~~~~IG~~~i~l~~l~~~~~~~~W~~L 118 (137)
T cd08675 81 RVELWHASMVSGDDFLGEVRIPLQGLQQAGSHQAWYFL 118 (137)
T ss_pred EEEEEcCCcCcCCcEEEEEEEehhhccCCCcccceEec
Confidence 99999999988999999999999998865555444443
No 72
>cd04014 C2_PKC_epsilon C2 domain in Protein Kinase C (PKC) epsilon. A single C2 domain is found in PKC epsilon. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1 (alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that
Probab=99.57 E-value=3e-14 Score=115.12 Aligned_cols=92 Identities=26% Similarity=0.489 Sum_probs=81.5
Q ss_pred eeeEEEEEEEeeecCCCCCC-----------CCCCcEEEEEECCeE-eeeeeecCCCCCcccceeEEEecCCCCcEEEEE
Q 021294 204 FVGLIKVNVVKGTNLAVRDV-----------MTSDPYVILALGHQT-VKTRVIKSNLNPVWNESLMLSIPENIPPLKVLV 271 (314)
Q Consensus 204 ~~g~L~V~v~~a~~L~~~d~-----------~~~dPyv~v~l~~~~-~kT~~~~~tlnP~w~e~~~f~v~~~~~~L~i~v 271 (314)
+.|.|.|+|++|++|+..+. ..+||||++.++++. .+|+++++++||.|||+|.|.+. ....|.|.|
T Consensus 2 ~~g~l~V~v~~a~~L~~~d~~~~~~~~~~~~g~~dpyv~v~~~~~~~~kT~~~~~t~~P~Wne~f~~~v~-~~~~l~~~v 80 (132)
T cd04014 2 FTGTLKIKICEAVDLKPTDWSTRHAVPKKGSQLLDPYVSIDVDDTHIGKTSTKPKTNSPVWNEEFTTEVH-NGRNLELTV 80 (132)
T ss_pred cceEEEEEEEEecCCCCCCchhhhcccccCccCcCcEEEEEECCEEEeEEeEcCCCCCCCcceeEEEEcC-CCCEEEEEE
Confidence 35889999999999988775 268999999998765 58999999999999999999996 447899999
Q ss_pred EEcCCCCCCceeEEEEEeCcccccc
Q 021294 272 YDKDTFTTDDFMGDAEIDIQPLVTA 296 (314)
Q Consensus 272 ~d~d~~~~dd~iG~~~v~l~~l~~~ 296 (314)
||++.++.+++||++.++|.++..+
T Consensus 81 ~d~~~~~~~~~iG~~~i~l~~l~~~ 105 (132)
T cd04014 81 FHDAAIGPDDFVANCTISFEDLIQR 105 (132)
T ss_pred EeCCCCCCCceEEEEEEEhHHhccc
Confidence 9999988999999999999999873
No 73
>cd04027 C2B_Munc13 C2 domain second repeat in Munc13 (mammalian uncoordinated) proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrev
Probab=99.57 E-value=2.6e-14 Score=114.76 Aligned_cols=88 Identities=38% Similarity=0.650 Sum_probs=78.8
Q ss_pred EEEEEEEeeecCCCCCCC-CCCcEEEEEECCeEeeeeeecCCCCCcccceeEEEecCCCCcEEEEEEEcCCC--------
Q 021294 207 LIKVNVVKGTNLAVRDVM-TSDPYVILALGHQTVKTRVIKSNLNPVWNESLMLSIPENIPPLKVLVYDKDTF-------- 277 (314)
Q Consensus 207 ~L~V~v~~a~~L~~~d~~-~~dPyv~v~l~~~~~kT~~~~~tlnP~w~e~~~f~v~~~~~~L~i~v~d~d~~-------- 277 (314)
.|.|+|++|++|+..+.. .+||||++.++.+..+|+++++++||.|+|.|.|.+......|.|+|||++..
T Consensus 2 ~L~V~vi~a~~L~~~d~~g~~DPyv~v~~~~~~~kT~~v~~t~~P~Wne~f~f~~~~~~~~l~i~v~d~d~~~~~~~~~~ 81 (127)
T cd04027 2 KISITVVCAQGLIAKDKTGTSDPYVTVQVGKTKKRTKTIPQNLNPVWNEKFHFECHNSSDRIKVRVWDEDDDIKSRLKQK 81 (127)
T ss_pred eEEEEEEECcCCcCCCCCCCcCcEEEEEECCEeeecceecCCCCCccceEEEEEecCCCCEEEEEEEECCCCccccccee
Confidence 589999999999998876 88999999999889999999999999999999998865557899999999852
Q ss_pred ---CCCceeEEEEEeCcccc
Q 021294 278 ---TTDDFMGDAEIDIQPLV 294 (314)
Q Consensus 278 ---~~dd~iG~~~v~l~~l~ 294 (314)
+.+++||++.+++.++.
T Consensus 82 ~~~~~~~~iG~~~i~l~~~~ 101 (127)
T cd04027 82 FTRESDDFLGQTIIEVRTLS 101 (127)
T ss_pred ccccCCCcceEEEEEhHHcc
Confidence 47899999999999875
No 74
>cd04011 C2B_Ferlin C2 domain second repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme
Probab=99.57 E-value=2.2e-14 Score=112.37 Aligned_cols=89 Identities=25% Similarity=0.379 Sum_probs=78.9
Q ss_pred eEEEEEEEeeecCCCCCCCCCCcEEEEEECCeEeeeeeecCCCCCcccceeEEEecC-----CCCcEEEEEEEcCCCCCC
Q 021294 206 GLIKVNVVKGTNLAVRDVMTSDPYVILALGHQTVKTRVIKSNLNPVWNESLMLSIPE-----NIPPLKVLVYDKDTFTTD 280 (314)
Q Consensus 206 g~L~V~v~~a~~L~~~d~~~~dPyv~v~l~~~~~kT~~~~~tlnP~w~e~~~f~v~~-----~~~~L~i~v~d~d~~~~d 280 (314)
-.|.|+|++|++|+ ....||||++.+++++.+|++++++.||.|+|.|.|.+.. ....|.|+|||++.++.+
T Consensus 4 ~~l~V~v~~a~~L~---~~~~dpyv~v~~~~~~~kT~~~~~t~nP~wne~f~f~~~~~~~~l~~~~l~i~V~d~~~~~~~ 80 (111)
T cd04011 4 FQVRVRVIEARQLV---GGNIDPVVKVEVGGQKKYTSVKKGTNCPFYNEYFFFNFHESPDELFDKIIKISVYDSRSLRSD 80 (111)
T ss_pred EEEEEEEEEcccCC---CCCCCCEEEEEECCEeeeeeEEeccCCCccccEEEEecCCCHHHHhcCeEEEEEEcCcccccC
Confidence 46899999999998 3478999999999999999999999999999999998743 235799999999999899
Q ss_pred ceeEEEEEeCccccccc
Q 021294 281 DFMGDAEIDIQPLVTAA 297 (314)
Q Consensus 281 d~iG~~~v~l~~l~~~~ 297 (314)
++||++.++|..+....
T Consensus 81 ~~iG~~~i~l~~v~~~~ 97 (111)
T cd04011 81 TLIGSFKLDVGTVYDQP 97 (111)
T ss_pred CccEEEEECCccccCCC
Confidence 99999999999997653
No 75
>cd04037 C2E_Ferlin C2 domain fifth repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.57 E-value=2.8e-14 Score=114.11 Aligned_cols=88 Identities=33% Similarity=0.541 Sum_probs=78.1
Q ss_pred EEEEEEEeeecCCCCCCC-CCCcEEEEEECCeE--eeeeeecCCCCCcccceeEEEecC-CCCcEEEEEEEcCCCCCCce
Q 021294 207 LIKVNVVKGTNLAVRDVM-TSDPYVILALGHQT--VKTRVIKSNLNPVWNESLMLSIPE-NIPPLKVLVYDKDTFTTDDF 282 (314)
Q Consensus 207 ~L~V~v~~a~~L~~~d~~-~~dPyv~v~l~~~~--~kT~~~~~tlnP~w~e~~~f~v~~-~~~~L~i~v~d~d~~~~dd~ 282 (314)
+|.|.|++|++|+..+.. .+||||++.++.+. .+|.++++++||.|||.|.|.+.. ....|.|+|||++.++.+++
T Consensus 1 ~lrV~Vi~a~~L~~~d~~g~~DPYv~v~~~~~~~~~kT~~v~~t~nP~Wne~f~f~~~~~~~~~L~~~V~d~d~~~~dd~ 80 (124)
T cd04037 1 LVRVYVVRARNLQPKDPNGKSDPYLKIKLGKKKINDRDNYIPNTLNPVFGKMFELEATLPGNSILKISVMDYDLLGSDDL 80 (124)
T ss_pred CEEEEEEECcCCCCCCCCCCCCcEEEEEECCeeccceeeEEECCCCCccceEEEEEecCCCCCEEEEEEEECCCCCCCce
Confidence 378999999999988876 89999999998765 478888899999999999998754 45689999999999999999
Q ss_pred eEEEEEeCcccc
Q 021294 283 MGDAEIDIQPLV 294 (314)
Q Consensus 283 iG~~~v~l~~l~ 294 (314)
||++.++|.+..
T Consensus 81 iG~~~i~l~~~~ 92 (124)
T cd04037 81 IGETVIDLEDRF 92 (124)
T ss_pred eEEEEEeecccc
Confidence 999999998775
No 76
>cd08384 C2B_Rabphilin_Doc2 C2 domain second repeat present in Rabphilin and Double C2 domain. Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domai
Probab=99.57 E-value=1.4e-14 Score=117.25 Aligned_cols=91 Identities=32% Similarity=0.461 Sum_probs=79.6
Q ss_pred eeeeeEEEEEEEeeecCCCCCCC-CCCcEEEEEECC-----eEeeeeeecCCCCCcccceeEEEecC---CCCcEEEEEE
Q 021294 202 VEFVGLIKVNVVKGTNLAVRDVM-TSDPYVILALGH-----QTVKTRVIKSNLNPVWNESLMLSIPE---NIPPLKVLVY 272 (314)
Q Consensus 202 ~e~~g~L~V~v~~a~~L~~~d~~-~~dPyv~v~l~~-----~~~kT~~~~~tlnP~w~e~~~f~v~~---~~~~L~i~v~ 272 (314)
....+.|.|+|++|++|+..+.. .+||||++.+.. ...+|+++++++||.|||+|.|.+.. ....|.|+||
T Consensus 9 ~~~~~~L~V~Vi~a~~L~~~d~~~~~DpyV~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~l~~~~l~~~V~ 88 (133)
T cd08384 9 NTQRRGLIVGIIRCVNLAAMDANGYSDPFVKLYLKPDAGKKSKHKTQVKKKTLNPEFNEEFFYDIKHSDLAKKTLEITVW 88 (133)
T ss_pred cCCCCEEEEEEEEEcCCCCcCCCCCCCcEEEEEEEcCCCccCCceeeeEeccCCCCcccEEEEECCHHHhCCCEEEEEEE
Confidence 34568999999999999998876 899999999842 45799999999999999999999864 2457999999
Q ss_pred EcCCCCCCceeEEEEEeCcc
Q 021294 273 DKDTFTTDDFMGDAEIDIQP 292 (314)
Q Consensus 273 d~d~~~~dd~iG~~~v~l~~ 292 (314)
|++..+.+++||++.+++..
T Consensus 89 d~d~~~~~~~lG~~~i~l~~ 108 (133)
T cd08384 89 DKDIGKSNDYIGGLQLGINA 108 (133)
T ss_pred eCCCCCCccEEEEEEEecCC
Confidence 99999999999999999985
No 77
>cd08389 C2A_Synaptotagmin-14_16 C2A domain first repeat present in Synaptotagmins 14 and 16. Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle
Probab=99.57 E-value=1.9e-14 Score=115.04 Aligned_cols=96 Identities=23% Similarity=0.375 Sum_probs=80.9
Q ss_pred eeeEEEEEEEeeecCCCCCCC-CCCcEEEEEE---CCeEeeeeeecCCCCCcccceeEEE-ecC---CCCcEEEEEEEcC
Q 021294 204 FVGLIKVNVVKGTNLAVRDVM-TSDPYVILAL---GHQTVKTRVIKSNLNPVWNESLMLS-IPE---NIPPLKVLVYDKD 275 (314)
Q Consensus 204 ~~g~L~V~v~~a~~L~~~d~~-~~dPyv~v~l---~~~~~kT~~~~~tlnP~w~e~~~f~-v~~---~~~~L~i~v~d~d 275 (314)
..+.|.|+|++|++|+..+.. ..||||++.+ ..++.+|++++. .||+|||.|.|. +.. ....|.|.|||++
T Consensus 14 ~~~~L~V~Vi~a~nL~~~~~~~~~d~yVk~~llp~~~~~~kTkv~~~-~nP~fnE~F~f~~i~~~~l~~~~L~~~V~~~~ 92 (124)
T cd08389 14 SARKLTVTVIRAQDIPTKDRGGASSWQVHLVLLPSKKQRAKTKVQRG-PNPVFNETFTFSRVEPEELNNMALRFRLYGVE 92 (124)
T ss_pred CCCEEEEEEEEecCCCchhcCCCCCcEEEEEEccCCcceeecccccC-CCCcccCEEEECCCCHHHhccCEEEEEEEECC
Confidence 346899999999999998866 7899999877 246789999888 999999999998 543 4567999999999
Q ss_pred CCCCCceeEEEEEeCcccccccccc
Q 021294 276 TFTTDDFMGDAEIDIQPLVTAARAC 300 (314)
Q Consensus 276 ~~~~dd~iG~~~v~l~~l~~~~~~~ 300 (314)
.++++++||++.++|.++..+....
T Consensus 93 ~~~~~~~lG~~~i~L~~l~~~~~~~ 117 (124)
T cd08389 93 RMRKERLIGEKVVPLSQLNLEGETT 117 (124)
T ss_pred CcccCceEEEEEEeccccCCCCCce
Confidence 9999999999999999996554433
No 78
>cd08390 C2A_Synaptotagmin-15-17 C2A domain first repeat present in Synaptotagmins 15 and 17. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulat
Probab=99.56 E-value=3.3e-14 Score=113.23 Aligned_cols=97 Identities=22% Similarity=0.399 Sum_probs=82.7
Q ss_pred eeeEEEEEEEeeecCCCCC-CC-CCCcEEEEEEC---CeEeeeeeecCCCCCcccceeEEEecC---CCCcEEEEEEEcC
Q 021294 204 FVGLIKVNVVKGTNLAVRD-VM-TSDPYVILALG---HQTVKTRVIKSNLNPVWNESLMLSIPE---NIPPLKVLVYDKD 275 (314)
Q Consensus 204 ~~g~L~V~v~~a~~L~~~d-~~-~~dPyv~v~l~---~~~~kT~~~~~tlnP~w~e~~~f~v~~---~~~~L~i~v~d~d 275 (314)
..+.|.|+|++|++|+..+ .. .+||||++++. .+..+|+++++++||.|||.|.|.+.. ....|.|+|||++
T Consensus 12 ~~~~L~V~v~~a~~L~~~~~~~~~~dpyV~v~l~~~~~~~~~T~v~~~~~~P~wne~f~f~i~~~~l~~~~l~i~v~d~~ 91 (123)
T cd08390 12 EEEQLTVSLIKARNLPPRTKDVAHCDPFVKVCLLPDERRSLQSKVKRKTQNPNFDETFVFQVSFKELQRRTLRLSVYDVD 91 (123)
T ss_pred CCCEEEEEEEEecCCCCccCCCCCCCcEEEEEEeeCCCCceEeeeEcCCCCCccceEEEEEcCHHHhcccEEEEEEEECC
Confidence 3468999999999999887 34 88999999983 456789999999999999999999865 2457999999999
Q ss_pred CCCCCceeEEEEEeCcccccccccc
Q 021294 276 TFTTDDFMGDAEIDIQPLVTAARAC 300 (314)
Q Consensus 276 ~~~~dd~iG~~~v~l~~l~~~~~~~ 300 (314)
..+.+++||++.++|.++.......
T Consensus 92 ~~~~~~~iG~~~i~L~~l~~~~~~~ 116 (123)
T cd08390 92 RFSRHCIIGHVLFPLKDLDLVKGGV 116 (123)
T ss_pred cCCCCcEEEEEEEeccceecCCCce
Confidence 9889999999999999987655443
No 79
>cd08404 C2B_Synaptotagmin-4 C2 domain second repeat present in Synaptotagmin 4. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling s
Probab=99.56 E-value=1.6e-14 Score=117.32 Aligned_cols=89 Identities=34% Similarity=0.492 Sum_probs=77.5
Q ss_pred eeEEEEEEEeeecCCCCCCC-CCCcEEEEEEC--C---eEeeeeeecCCCCCcccceeEEEecC---CCCcEEEEEEEcC
Q 021294 205 VGLIKVNVVKGTNLAVRDVM-TSDPYVILALG--H---QTVKTRVIKSNLNPVWNESLMLSIPE---NIPPLKVLVYDKD 275 (314)
Q Consensus 205 ~g~L~V~v~~a~~L~~~d~~-~~dPyv~v~l~--~---~~~kT~~~~~tlnP~w~e~~~f~v~~---~~~~L~i~v~d~d 275 (314)
.+.|.|+|++|++|+..+.. .+||||++.+. . .+.+|+++++++||.|+|+|.|.+.. ....|.|+|||++
T Consensus 14 ~~~L~V~vi~a~~L~~~d~~g~~Dpyv~v~l~~~~~~~~~~kT~v~k~t~nP~w~e~F~f~v~~~~~~~~~l~~~v~d~d 93 (136)
T cd08404 14 TNRLTVVVLKARHLPKMDVSGLADPYVKVNLYYGKKRISKKKTHVKKCTLNPVFNESFVFDIPSEELEDISVEFLVLDSD 93 (136)
T ss_pred CCeEEEEEEEeeCCCccccCCCCCeEEEEEEEcCCceeeeEcCccccCCCCCccCceEEEECCHHHhCCCEEEEEEEECC
Confidence 46899999999999988866 89999999983 2 25689999999999999999999864 3456899999999
Q ss_pred CCCCCceeEEEEEeCccc
Q 021294 276 TFTTDDFMGDAEIDIQPL 293 (314)
Q Consensus 276 ~~~~dd~iG~~~v~l~~l 293 (314)
.++++++||++.+++...
T Consensus 94 ~~~~~~~iG~~~~~~~~~ 111 (136)
T cd08404 94 RVTKNEVIGRLVLGPKAS 111 (136)
T ss_pred CCCCCccEEEEEECCcCC
Confidence 999999999999999883
No 80
>cd04051 C2_SRC2_like C2 domain present in Soybean genes Regulated by Cold 2 (SRC2)-like proteins. SRC2 production is a response to pathogen infiltration. The initial response of increased Ca2+ concentrations are coupled to downstream signal transduction pathways via calcium binding proteins. SRC2 contains a single C2 domain which localizes to the plasma membrane and is involved in Ca2+ dependent protein binding. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such
Probab=99.56 E-value=1.9e-14 Score=115.02 Aligned_cols=92 Identities=20% Similarity=0.417 Sum_probs=81.9
Q ss_pred EEEEEEEeeecCCCCCCC-CCCcEEEEEECC-eEeeeeeec-CCCCCcccceeEEEecCC-----CCcEEEEEEEcCCCC
Q 021294 207 LIKVNVVKGTNLAVRDVM-TSDPYVILALGH-QTVKTRVIK-SNLNPVWNESLMLSIPEN-----IPPLKVLVYDKDTFT 278 (314)
Q Consensus 207 ~L~V~v~~a~~L~~~d~~-~~dPyv~v~l~~-~~~kT~~~~-~tlnP~w~e~~~f~v~~~-----~~~L~i~v~d~d~~~ 278 (314)
.|.|+|++|++|+..+.. .+||||++.++. +..+|++.. .+.||.|||.|.|.+... ...|.|+|||++.++
T Consensus 1 ~L~V~V~sA~~L~~~~~~~~~dpYv~v~~~~~~~~~T~~~~~~~~~P~Wne~f~f~v~~~~~~~~~~~l~~~v~d~~~~~ 80 (125)
T cd04051 1 TLEITIISAEDLKNVNLFGKMKVYAVVWIDPSHKQSTPVDRDGGTNPTWNETLRFPLDERLLQQGRLALTIEVYCERPSL 80 (125)
T ss_pred CEEEEEEEcccCCCCCcccCCceEEEEEECCCcccccccccCCCCCCCCCCEEEEEcChHhcccCccEEEEEEEECCCCC
Confidence 378999999999988765 899999999987 888999875 489999999999998764 578999999999988
Q ss_pred CCceeEEEEEeCcccccccc
Q 021294 279 TDDFMGDAEIDIQPLVTAAR 298 (314)
Q Consensus 279 ~dd~iG~~~v~l~~l~~~~~ 298 (314)
.+++||++.++|.++..+..
T Consensus 81 ~~~~lG~~~i~l~~l~~~~~ 100 (125)
T cd04051 81 GDKLIGEVRVPLKDLLDGAS 100 (125)
T ss_pred CCCcEEEEEEEHHHhhcccC
Confidence 99999999999999987665
No 81
>cd04040 C2D_Tricalbin-like C2 domain fourth repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.55 E-value=4.3e-14 Score=111.25 Aligned_cols=98 Identities=39% Similarity=0.533 Sum_probs=83.1
Q ss_pred EEEEEEeeecCCCCCCC-CCCcEEEEEECC-eEeeeeeecCCCCCcccceeEEEecC-CCCcEEEEEEEcCCCCCCceeE
Q 021294 208 IKVNVVKGTNLAVRDVM-TSDPYVILALGH-QTVKTRVIKSNLNPVWNESLMLSIPE-NIPPLKVLVYDKDTFTTDDFMG 284 (314)
Q Consensus 208 L~V~v~~a~~L~~~d~~-~~dPyv~v~l~~-~~~kT~~~~~tlnP~w~e~~~f~v~~-~~~~L~i~v~d~d~~~~dd~iG 284 (314)
|.|+|++|++|+..+.. .+||||++.+++ ...+|+++.++.+|.|+|.|.|.+.. ....|.|+|||++..+.+++||
T Consensus 1 l~v~vi~a~~L~~~~~~~~~dpyv~v~~~~~~~~~T~v~~~~~~P~Wne~f~~~~~~~~~~~l~~~v~d~~~~~~~~~iG 80 (115)
T cd04040 1 LTVDVISAENLPSADRNGKSDPFVKFYLNGEKVFKTKTIKKTLNPVWNESFEVPVPSRVRAVLKVEVYDWDRGGKDDLLG 80 (115)
T ss_pred CEEEEEeeeCCCCCCCCCCCCCeEEEEECCCcceeeceecCCCCCcccccEEEEeccCCCCEEEEEEEeCCCCCCCCceE
Confidence 57899999999988765 789999999964 45799999999999999999999876 4578999999999999999999
Q ss_pred EEEEeCccccccccccCcccc
Q 021294 285 DAEIDIQPLVTAARACETPIS 305 (314)
Q Consensus 285 ~~~v~l~~l~~~~~~~~~~~~ 305 (314)
++.+++.++..+.....+..+
T Consensus 81 ~~~~~l~~l~~~~~~~~~~~L 101 (115)
T cd04040 81 SAYIDLSDLEPEETTELTLPL 101 (115)
T ss_pred EEEEEHHHcCCCCcEEEEEEC
Confidence 999999998876544444333
No 82
>cd08402 C2B_Synaptotagmin-1 C2 domain second repeat present in Synaptotagmin 1. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of the class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis. It, like synaptotagmin-2, has an N-glycosylated N-terminus. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are:
Probab=99.55 E-value=1.8e-14 Score=117.04 Aligned_cols=91 Identities=32% Similarity=0.422 Sum_probs=78.7
Q ss_pred eeeeEEEEEEEeeecCCCCCCC-CCCcEEEEEEC--C---eEeeeeeecCCCCCcccceeEEEecCC---CCcEEEEEEE
Q 021294 203 EFVGLIKVNVVKGTNLAVRDVM-TSDPYVILALG--H---QTVKTRVIKSNLNPVWNESLMLSIPEN---IPPLKVLVYD 273 (314)
Q Consensus 203 e~~g~L~V~v~~a~~L~~~d~~-~~dPyv~v~l~--~---~~~kT~~~~~tlnP~w~e~~~f~v~~~---~~~L~i~v~d 273 (314)
...+.|.|+|++|++|+..+.. .+||||++.+. . ...+|+++++++||.|||.|.|.+... ...|.|+|||
T Consensus 12 ~~~~~l~V~Vi~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~i~~~~l~~~~l~~~v~d 91 (136)
T cd08402 12 PTAGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKRTLNPYYNESFSFEVPFEQIQKVHLIVTVLD 91 (136)
T ss_pred CCCCeEEEEEEEeeCCCcccCCCCCCCeEEEEEEECCcccceeeccceeCCCCCcccceEEEECCHHHhCCCEEEEEEEe
Confidence 4557899999999999988776 89999999984 2 356899999999999999999998642 3479999999
Q ss_pred cCCCCCCceeEEEEEeCccc
Q 021294 274 KDTFTTDDFMGDAEIDIQPL 293 (314)
Q Consensus 274 ~d~~~~dd~iG~~~v~l~~l 293 (314)
++.++.+++||++.+++...
T Consensus 92 ~~~~~~~~~iG~~~i~~~~~ 111 (136)
T cd08402 92 YDRIGKNDPIGKVVLGCNAT 111 (136)
T ss_pred CCCCCCCceeEEEEECCccC
Confidence 99999999999999999764
No 83
>cd04048 C2A_Copine C2 domain first repeat in Copine. There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 doma
Probab=99.55 E-value=3.3e-14 Score=112.94 Aligned_cols=95 Identities=31% Similarity=0.473 Sum_probs=78.7
Q ss_pred EEEeeecCCCCCCC-CCCcEEEEEECCe-------EeeeeeecCCCCCcccceeEEEec-CCCCcEEEEEEEcCC----C
Q 021294 211 NVVKGTNLAVRDVM-TSDPYVILALGHQ-------TVKTRVIKSNLNPVWNESLMLSIP-ENIPPLKVLVYDKDT----F 277 (314)
Q Consensus 211 ~v~~a~~L~~~d~~-~~dPyv~v~l~~~-------~~kT~~~~~tlnP~w~e~~~f~v~-~~~~~L~i~v~d~d~----~ 277 (314)
..++|++|+..+.. .+||||++.+... ..+|+++++++||.|+|.|.|.+. +....|.|+|||++. .
T Consensus 5 ~~i~a~~L~~~d~~g~~DPyv~v~~~~~~~~~~~~~~kT~vi~~t~nP~wne~f~f~~~~~~~~~l~~~V~d~d~~~~~~ 84 (120)
T cd04048 5 LSISCRNLLDKDVLSKSDPFVVVYVKTGGSGQWVEIGRTEVIKNNLNPDFVTTFTVDYYFEEVQKLRFEVYDVDSKSKDL 84 (120)
T ss_pred EEEEccCCCCCCCCCCCCcEEEEEEEcCCCCceEEeccEeEeCCCCCCCceEEEEEEEEeEeeeEEEEEEEEecCCcCCC
Confidence 34788999988866 8999999999554 389999999999999999999864 345679999999997 8
Q ss_pred CCCceeEEEEEeCccccccccccCcccc
Q 021294 278 TTDDFMGDAEIDIQPLVTAARACETPIS 305 (314)
Q Consensus 278 ~~dd~iG~~~v~l~~l~~~~~~~~~~~~ 305 (314)
+.+++||++.+++.+|..+.....+..+
T Consensus 85 ~~~d~iG~~~i~l~~l~~~~~~~~~~~l 112 (120)
T cd04048 85 SDHDFLGEAECTLGEIVSSPGQKLTLPL 112 (120)
T ss_pred CCCcEEEEEEEEHHHHhcCCCcEEEEEc
Confidence 8999999999999999866544444444
No 84
>cd08692 C2B_Tac2-N C2 domain second repeat found in Tac2-N (Tandem C2 protein in Nucleus). Tac2-N contains two C2 domains and a short C-terminus including a WHXL motif, which are key in stabilizing transport vesicles to the plasma membrane by binding to a plasma membrane. However unlike the usual carboxyl-terminal-type (C-type) tandem C2 proteins, it lacks a transmembrane domain, a Slp-homology domain, and a Munc13-1-interacting domain. Homology search analysis indicate that no known protein motifs are located in its N-terminus, making Tac2-N a novel class of Ca2+-independent, C-type tandem C2 proteins. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polypho
Probab=99.53 E-value=3.7e-14 Score=114.03 Aligned_cols=92 Identities=17% Similarity=0.312 Sum_probs=76.5
Q ss_pred eeeeeEEEEEEEeeecCCCCCCC-CCCcEEEEEEC---C--eEeeeeeecCCC-CCcccceeEEEecCC--CCcEEEEEE
Q 021294 202 VEFVGLIKVNVVKGTNLAVRDVM-TSDPYVILALG---H--QTVKTRVIKSNL-NPVWNESLMLSIPEN--IPPLKVLVY 272 (314)
Q Consensus 202 ~e~~g~L~V~v~~a~~L~~~d~~-~~dPyv~v~l~---~--~~~kT~~~~~tl-nP~w~e~~~f~v~~~--~~~L~i~v~ 272 (314)
..+.+.|+|.|++|++|+..... ..||||+|.+- . .+.+|+++++++ +|.|||.|.|.++.+ ...|.|+||
T Consensus 10 ~p~~~rLtV~VikarnL~~~~~~~~~dpYVKV~L~~~~k~~~KkKT~v~k~t~~~P~fNEsF~Fdv~~~~~~v~l~v~v~ 89 (135)
T cd08692 10 QAVNSRIQLQILEAQNLPSSSTPLTLSFFVKVGMFSTGGLLYKKKTRLVKSSNGQVKWGETMIFPVTQQEHGIQFLIKLY 89 (135)
T ss_pred cCcCCeEEEEEEEccCCCcccCCCCCCcEEEEEEEECCCcceeecCccEECCCCCceecceEEEeCCchhheeEEEEEEE
Confidence 44668899999999999986433 67999999982 2 467899999995 699999999999763 245778999
Q ss_pred EcCCCCCCceeEEEEEeCccc
Q 021294 273 DKDTFTTDDFMGDAEIDIQPL 293 (314)
Q Consensus 273 d~d~~~~dd~iG~~~v~l~~l 293 (314)
|++..+++++||.+.+.....
T Consensus 90 d~~~~~~n~~IG~v~lG~~~~ 110 (135)
T cd08692 90 SRSSVRRKHFLGQVWISSDSS 110 (135)
T ss_pred eCCCCcCCceEEEEEECCccC
Confidence 999999999999999999764
No 85
>cd08690 C2_Freud-1 C2 domain found in 5' repressor element under dual repression binding protein-1 (Freud-1). Freud-1 is a novel calcium-regulated repressor that negatively regulates basal 5-HT1A receptor expression in neurons. It may also play a role in the altered regulation of 5-HT1A receptors associated with anxiety or major depression. Freud-1 contains two DM-14 basic repeats, a helix-loop-helix DNA binding domain, and a C2 domain. The Freud-1 C2 domain is thought to be calcium insensitive and it lacks several acidic residues that mediate calcium binding of the PKC C2 domain. In addition, it contains a poly-basic insert that is not present in calcium-dependent C2 domains and may function as a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules tha
Probab=99.53 E-value=1.2e-13 Score=114.07 Aligned_cols=98 Identities=31% Similarity=0.413 Sum_probs=76.7
Q ss_pred EEEEEeeec--CCCCCCC-CCCcEEEEEE-----CCeEeeeeeecCCCCCcccceeEEEecCC---------CCcEEEEE
Q 021294 209 KVNVVKGTN--LAVRDVM-TSDPYVILAL-----GHQTVKTRVIKSNLNPVWNESLMLSIPEN---------IPPLKVLV 271 (314)
Q Consensus 209 ~V~v~~a~~--L~~~d~~-~~dPyv~v~l-----~~~~~kT~~~~~tlnP~w~e~~~f~v~~~---------~~~L~i~v 271 (314)
.++|..+++ |+..+.. ..||||++.+ +.++.+|+++++|+||+|||.|.|.+... ...|.|+|
T Consensus 5 el~i~~~~~~~l~~~~~~~~~DpYVk~~l~~p~~~~~k~KT~v~k~TlnPvfNE~f~f~I~~~~~~~~R~l~~~~L~~~V 84 (155)
T cd08690 5 ELTIVRCIGIPLPSGWNPKDLDTYVKFEFPYPNEEPQSGKTSTIKDTNSPEYNESFKLNINRKHRSFQRVFKRHGLKFEV 84 (155)
T ss_pred EEEEEEeeccccCCCcCCCCCCeEEEEEEecCCCCCceeecCcccCCCCCcccceEEEEeccccchhhhhccCCcEEEEE
Confidence 444555555 6666544 7899999987 34688999999999999999999998643 35699999
Q ss_pred EEcCCC-CCCceeEEEEEeCccccccccccCccccc
Q 021294 272 YDKDTF-TTDDFMGDAEIDIQPLVTAARACETPISM 306 (314)
Q Consensus 272 ~d~d~~-~~dd~iG~~~v~l~~l~~~~~~~~~~~~~ 306 (314)
||++.+ .+|++||++.++|..+........+..++
T Consensus 85 ~d~~~f~~~D~~iG~~~i~L~~l~~~~~~~~~~~L~ 120 (155)
T cd08690 85 YHKGGFLRSDKLLGTAQVKLEPLETKCEIHESVDLM 120 (155)
T ss_pred EeCCCcccCCCeeEEEEEEcccccccCcceEEEEhh
Confidence 999986 57999999999999997665544444444
No 86
>cd04043 C2_Munc13_fungal C2 domain in Munc13 (mammalian uncoordinated) proteins; fungal group. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synap
Probab=99.52 E-value=1.3e-13 Score=110.40 Aligned_cols=89 Identities=30% Similarity=0.517 Sum_probs=78.5
Q ss_pred EEEEEEEeeecCCCCCCC-CCCcEEEEEECC---eEeeeeeecCCCCCcccceeEEEecC-CCCcEEEEEEEcCCCCCCc
Q 021294 207 LIKVNVVKGTNLAVRDVM-TSDPYVILALGH---QTVKTRVIKSNLNPVWNESLMLSIPE-NIPPLKVLVYDKDTFTTDD 281 (314)
Q Consensus 207 ~L~V~v~~a~~L~~~d~~-~~dPyv~v~l~~---~~~kT~~~~~tlnP~w~e~~~f~v~~-~~~~L~i~v~d~d~~~~dd 281 (314)
.|+|+|++|++|+..+.. .+||||++.+.. ...+|+++++++||.|||.|.|.+.. ....|.|+|||++..+.++
T Consensus 2 ~~~V~v~~a~~L~~~~~~~~~Dpyv~v~~~~~~~~~~kT~~~~~t~~P~Wne~f~f~i~~~~~~~L~i~v~d~d~~~~~~ 81 (126)
T cd04043 2 LFTIRIVRAENLKADSSNGLSDPYVTLVDTNGKRRIAKTRTIYDTLNPRWDEEFELEVPAGEPLWISATVWDRSFVGKHD 81 (126)
T ss_pred EEEEEEEEeECCCCCCCCCCCCceEEEEECCCCeeeecccEecCCCCCcccceEEEEcCCCCCCEEEEEEEECCCCCCCc
Confidence 588999999999988876 889999998853 46799999999999999999999976 3567999999999988999
Q ss_pred eeEEEEEeCccccc
Q 021294 282 FMGDAEIDIQPLVT 295 (314)
Q Consensus 282 ~iG~~~v~l~~l~~ 295 (314)
+||++.++|.++..
T Consensus 82 ~iG~~~i~l~~~~~ 95 (126)
T cd04043 82 LCGRASLKLDPKRF 95 (126)
T ss_pred eEEEEEEecCHHHc
Confidence 99999999987643
No 87
>cd08373 C2A_Ferlin C2 domain first repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.52 E-value=1.2e-13 Score=110.78 Aligned_cols=90 Identities=28% Similarity=0.375 Sum_probs=78.2
Q ss_pred EEeeecCCCCCCCCCCcEEEEEECCeEeeeeeecCCCCCcccceeEEEecC---CCCcEEEEEEEcCCCCCCceeEEEEE
Q 021294 212 VVKGTNLAVRDVMTSDPYVILALGHQTVKTRVIKSNLNPVWNESLMLSIPE---NIPPLKVLVYDKDTFTTDDFMGDAEI 288 (314)
Q Consensus 212 v~~a~~L~~~d~~~~dPyv~v~l~~~~~kT~~~~~tlnP~w~e~~~f~v~~---~~~~L~i~v~d~d~~~~dd~iG~~~v 288 (314)
|++|++|+. ....+||||++.++....+|++++++.||.|+|.|.|.+.. ....|.|+|||++..+.+++||++.+
T Consensus 2 vi~a~~L~~-~~g~~Dpyv~v~~~~~~~kT~v~~~~~nP~Wne~f~f~~~~~~~~~~~l~~~v~d~~~~~~d~~iG~~~~ 80 (127)
T cd08373 2 VVSLKNLPG-LKGKGDRIAKVTFRGVKKKTRVLENELNPVWNETFEWPLAGSPDPDESLEIVVKDYEKVGRNRLIGSATV 80 (127)
T ss_pred eEEeeCCcc-cCCCCCCEEEEEECCEeeecceeCCCcCCcccceEEEEeCCCcCCCCEEEEEEEECCCCCCCceEEEEEE
Confidence 678999988 33489999999999999999999999999999999999854 45789999999999999999999999
Q ss_pred eCccccccccccCc
Q 021294 289 DIQPLVTAARACET 302 (314)
Q Consensus 289 ~l~~l~~~~~~~~~ 302 (314)
+|.++..+.....+
T Consensus 81 ~l~~l~~~~~~~~~ 94 (127)
T cd08373 81 SLQDLVSEGLLEVT 94 (127)
T ss_pred EhhHcccCCceEEE
Confidence 99999865544433
No 88
>KOG0696 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=99.51 E-value=1e-14 Score=134.19 Aligned_cols=91 Identities=36% Similarity=0.572 Sum_probs=82.6
Q ss_pred eEEEEEEEeeecCCCCCCC-CCCcEEEEEE-----CCeEeeeeeecCCCCCcccceeEEEecC--CCCcEEEEEEEcCCC
Q 021294 206 GLIKVNVVKGTNLAVRDVM-TSDPYVILAL-----GHQTVKTRVIKSNLNPVWNESLMLSIPE--NIPPLKVLVYDKDTF 277 (314)
Q Consensus 206 g~L~V~v~~a~~L~~~d~~-~~dPyv~v~l-----~~~~~kT~~~~~tlnP~w~e~~~f~v~~--~~~~L~i~v~d~d~~ 277 (314)
..|.|.|.+|+||.++|.. .+||||++.+ +..+++|++++.++||+|||+|.|.+.+ ....|.|+|||||..
T Consensus 180 ~~l~v~i~ea~NLiPMDpNGlSDPYvk~kliPD~~~~sKqKTkTik~~LNP~wNEtftf~Lkp~DkdrRlsiEvWDWDrT 259 (683)
T KOG0696|consen 180 DVLTVTIKEAKNLIPMDPNGLSDPYVKLKLIPDPKNESKQKTKTIKATLNPVWNETFTFKLKPSDKDRRLSIEVWDWDRT 259 (683)
T ss_pred ceEEEEehhhccccccCCCCCCCcceeEEeccCCcchhhhhhhhhhhhcCccccceeEEecccccccceeEEEEeccccc
Confidence 5789999999999999987 9999999999 3456899999999999999999999865 557899999999999
Q ss_pred CCCceeEEEEEeCcccccc
Q 021294 278 TTDDFMGDAEIDIQPLVTA 296 (314)
Q Consensus 278 ~~dd~iG~~~v~l~~l~~~ 296 (314)
+++||+|..++.+++|+..
T Consensus 260 sRNDFMGslSFgisEl~K~ 278 (683)
T KOG0696|consen 260 SRNDFMGSLSFGISELQKA 278 (683)
T ss_pred ccccccceecccHHHHhhc
Confidence 9999999999999999854
No 89
>cd08405 C2B_Synaptotagmin-7 C2 domain second repeat present in Synaptotagmin 7. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves
Probab=99.51 E-value=6.5e-14 Score=113.75 Aligned_cols=90 Identities=37% Similarity=0.535 Sum_probs=78.0
Q ss_pred eeeEEEEEEEeeecCCCCCCC-CCCcEEEEEEC--C---eEeeeeeecCCCCCcccceeEEEecC---CCCcEEEEEEEc
Q 021294 204 FVGLIKVNVVKGTNLAVRDVM-TSDPYVILALG--H---QTVKTRVIKSNLNPVWNESLMLSIPE---NIPPLKVLVYDK 274 (314)
Q Consensus 204 ~~g~L~V~v~~a~~L~~~d~~-~~dPyv~v~l~--~---~~~kT~~~~~tlnP~w~e~~~f~v~~---~~~~L~i~v~d~ 274 (314)
..+.|.|+|++|++|+..+.. .+||||++.+. . ...+|++++++.||.|||.|.|.+.. ....|.|+|||+
T Consensus 13 ~~~~L~v~vi~a~~L~~~~~~g~~dpyV~v~l~~~~~~~~~~kT~v~~~t~~P~wne~F~f~i~~~~~~~~~l~~~v~d~ 92 (136)
T cd08405 13 TANRITVNIIKARNLKAMDINGTSDPYVKVWLMYKDKRVEKKKTVIKKRTLNPVFNESFIFNIPLERLRETTLIITVMDK 92 (136)
T ss_pred CCCeEEEEEEEeeCCCccccCCCCCceEEEEEEeCCCccccccCcceeCCCCCcccceEEEeCCHHHhCCCEEEEEEEEC
Confidence 346899999999999987766 89999999982 2 35689999999999999999999853 245799999999
Q ss_pred CCCCCCceeEEEEEeCccc
Q 021294 275 DTFTTDDFMGDAEIDIQPL 293 (314)
Q Consensus 275 d~~~~dd~iG~~~v~l~~l 293 (314)
+.++++++||++.+++...
T Consensus 93 ~~~~~~~~lG~~~i~~~~~ 111 (136)
T cd08405 93 DRLSRNDLIGKIYLGWKSG 111 (136)
T ss_pred CCCCCCcEeEEEEECCccC
Confidence 9999999999999999876
No 90
>cd04026 C2_PKC_alpha_gamma C2 domain in Protein Kinase C (PKC) alpha and gamma. A single C2 domain is found in PKC alpha and gamma. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1(alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transd
Probab=99.51 E-value=1.4e-13 Score=111.03 Aligned_cols=91 Identities=36% Similarity=0.545 Sum_probs=80.8
Q ss_pred eEEEEEEEeeecCCCCCCC-CCCcEEEEEEC-----CeEeeeeeecCCCCCcccceeEEEecC--CCCcEEEEEEEcCCC
Q 021294 206 GLIKVNVVKGTNLAVRDVM-TSDPYVILALG-----HQTVKTRVIKSNLNPVWNESLMLSIPE--NIPPLKVLVYDKDTF 277 (314)
Q Consensus 206 g~L~V~v~~a~~L~~~d~~-~~dPyv~v~l~-----~~~~kT~~~~~tlnP~w~e~~~f~v~~--~~~~L~i~v~d~d~~ 277 (314)
+.|.|+|++|++|+..+.. ..||||++.+. ....+|++++++.+|.|+|+|.|.+.. ....|.|+|||++..
T Consensus 13 ~~l~v~i~~a~nL~~~~~~~~~dpyv~v~~~~~~~~~~~~rT~v~~~~~~P~wne~f~~~~~~~~~~~~l~v~v~d~~~~ 92 (131)
T cd04026 13 NKLTVEVREAKNLIPMDPNGLSDPYVKLKLIPDPKNETKQKTKTIKKTLNPVWNETFTFDLKPADKDRRLSIEVWDWDRT 92 (131)
T ss_pred CEEEEEEEEeeCCCCcCCCCCCCCcEEEEEEcCCCCCceecceeecCCCCCCccceEEEeCCchhcCCEEEEEEEECCCC
Confidence 7899999999999987766 78999999995 367899999999999999999999865 346799999999998
Q ss_pred CCCceeEEEEEeCcccccc
Q 021294 278 TTDDFMGDAEIDIQPLVTA 296 (314)
Q Consensus 278 ~~dd~iG~~~v~l~~l~~~ 296 (314)
+.+++||.+.++|.++...
T Consensus 93 ~~~~~iG~~~~~l~~l~~~ 111 (131)
T cd04026 93 TRNDFMGSLSFGVSELIKM 111 (131)
T ss_pred CCcceeEEEEEeHHHhCcC
Confidence 8999999999999999854
No 91
>cd08676 C2A_Munc13-like C2 domain first repeat in Munc13 (mammalian uncoordinated)-like proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, sy
Probab=99.51 E-value=1.3e-13 Score=113.94 Aligned_cols=89 Identities=33% Similarity=0.571 Sum_probs=78.1
Q ss_pred eeeeEEEEEEEeeecCCCCCCC-CCCcEEEEEECC-----------------------------eEeeeeeecCCCCCcc
Q 021294 203 EFVGLIKVNVVKGTNLAVRDVM-TSDPYVILALGH-----------------------------QTVKTRVIKSNLNPVW 252 (314)
Q Consensus 203 e~~g~L~V~v~~a~~L~~~d~~-~~dPyv~v~l~~-----------------------------~~~kT~~~~~tlnP~w 252 (314)
...+.|.|+|++|++|+..|.. .+||||++.+.. ...+|+++++++||.|
T Consensus 25 ~~~~~L~V~vi~a~~L~~~d~~g~~DPyv~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kT~v~~~tlnP~W 104 (153)
T cd08676 25 PPIFVLKVTVIEAKGLLAKDVNGFSDPYCMLGIVPASRERNSEKSKKRKSHRKKAVLKDTVPAKSIKVTEVKPQTLNPVW 104 (153)
T ss_pred CCeEEEEEEEEeccCCcccCCCCCCCceEEEEEcccccccccccccccccccccccccccccccccEecceecCCCCCcc
Confidence 4568999999999999998876 899999999853 2368999999999999
Q ss_pred cceeEEEecC-CCCcEEEEEEEcCCCCCCceeEEEEEeCccccc
Q 021294 253 NESLMLSIPE-NIPPLKVLVYDKDTFTTDDFMGDAEIDIQPLVT 295 (314)
Q Consensus 253 ~e~~~f~v~~-~~~~L~i~v~d~d~~~~dd~iG~~~v~l~~l~~ 295 (314)
||.|.|.+.. ....|.|+|||++ +++||++.+++.++..
T Consensus 105 nE~F~f~v~~~~~~~L~i~V~D~d----d~~IG~v~i~l~~l~~ 144 (153)
T cd08676 105 NETFRFEVEDVSNDQLHLDIWDHD----DDFLGCVNIPLKDLPS 144 (153)
T ss_pred ccEEEEEeccCCCCEEEEEEEecC----CCeEEEEEEEHHHhCC
Confidence 9999999865 4568999999987 8999999999999983
No 92
>cd08403 C2B_Synaptotagmin-3-5-6-9-10 C2 domain second repeat present in Synaptotagmins 3, 5, 6, 9, and 10. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 3, a member of class 3 synaptotagmins, is located in the brain and localized to the active zone and plasma membrane. It functions as a Ca2+ sensor for fast exocytosis. It, along with synaptotagmins 5,6, and 10, has disulfide bonds at its N-terminus. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and localized to the synaptic vesicles. It is thought to be a Ca2+-sensor for dense-core vesicle exocytosis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind
Probab=99.51 E-value=9.9e-14 Score=112.38 Aligned_cols=90 Identities=30% Similarity=0.493 Sum_probs=77.1
Q ss_pred eeeEEEEEEEeeecCCCCCCC-CCCcEEEEEECC-----eEeeeeeecCCCCCcccceeEEEecC---CCCcEEEEEEEc
Q 021294 204 FVGLIKVNVVKGTNLAVRDVM-TSDPYVILALGH-----QTVKTRVIKSNLNPVWNESLMLSIPE---NIPPLKVLVYDK 274 (314)
Q Consensus 204 ~~g~L~V~v~~a~~L~~~d~~-~~dPyv~v~l~~-----~~~kT~~~~~tlnP~w~e~~~f~v~~---~~~~L~i~v~d~ 274 (314)
..+.|.|+|++|++|+..+.. .+||||++.+.. ...+|+++++++||.|+|.|.|.+.. ....|.|+|||+
T Consensus 12 ~~~~L~V~v~~A~~L~~~d~~g~~dpyvkv~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~i~~~~~~~~~l~~~v~d~ 91 (134)
T cd08403 12 TAGRLTLTIIKARNLKAMDITGFSDPYVKVSLMCEGRRLKKKKTSVKKNTLNPTYNEALVFDVPPENVDNVSLIIAVVDY 91 (134)
T ss_pred CCCEEEEEEEEeeCCCccccCCCCCceEEEEEEeCCcccceecCCcccCCCCCcccceEEEECCHHHhCCCEEEEEEEEC
Confidence 457899999999999998866 899999999832 35689999999999999999999854 224699999999
Q ss_pred CCCCCCceeEEEEEeCccc
Q 021294 275 DTFTTDDFMGDAEIDIQPL 293 (314)
Q Consensus 275 d~~~~dd~iG~~~v~l~~l 293 (314)
+.++.+++||++.+++...
T Consensus 92 ~~~~~~~~IG~~~l~~~~~ 110 (134)
T cd08403 92 DRVGHNELIGVCRVGPNAD 110 (134)
T ss_pred CCCCCCceeEEEEECCCCC
Confidence 9999999999999998733
No 93
>cd08408 C2B_Synaptotagmin-14_16 C2 domain second repeat present in Synaptotagmins 14 and 16. Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle
Probab=99.51 E-value=1e-13 Score=112.90 Aligned_cols=91 Identities=22% Similarity=0.388 Sum_probs=78.9
Q ss_pred eeeEEEEEEEeeecCCCCCCC-CCCcEEEEEECC------eEeeeeeecCCCCCcccceeEEEecC---CCCcEEEEEEE
Q 021294 204 FVGLIKVNVVKGTNLAVRDVM-TSDPYVILALGH------QTVKTRVIKSNLNPVWNESLMLSIPE---NIPPLKVLVYD 273 (314)
Q Consensus 204 ~~g~L~V~v~~a~~L~~~d~~-~~dPyv~v~l~~------~~~kT~~~~~tlnP~w~e~~~f~v~~---~~~~L~i~v~d 273 (314)
..+.|.|+|++|++|+..+.. ..||||++.+.. .+.+|++++++.||+|||+|.|.+.. ....|.|+|||
T Consensus 13 ~~~~L~V~VikarnL~~~~~~~~~dpyVkv~llp~~~~~~~~~kT~v~~~t~nPvfnEtF~f~i~~~~l~~~~L~~~V~~ 92 (138)
T cd08408 13 LTGRLSVEVIKGSNFKNLAMNKAPDTYVKLTLLNSDGQEISKSKTSIRRGQPDPEFKETFVFQVALFQLSEVTLMFSVYN 92 (138)
T ss_pred CCCeEEEEEEEecCCCccccCCCCCeeEEEEEEeCCCcceeeccceeecCCCCCcEeeeEEEECCHHHhCccEEEEEEEE
Confidence 457899999999999988776 789999999931 24689999999999999999999865 34579999999
Q ss_pred cCCCCCCceeEEEEEeCcccc
Q 021294 274 KDTFTTDDFMGDAEIDIQPLV 294 (314)
Q Consensus 274 ~d~~~~dd~iG~~~v~l~~l~ 294 (314)
++.++++++||++.+++....
T Consensus 93 ~~~~~~~~~iG~v~l~~~~~~ 113 (138)
T cd08408 93 KRKMKRKEMIGWFSLGLNSSG 113 (138)
T ss_pred CCCCCCCcEEEEEEECCcCCC
Confidence 999999999999999887553
No 94
>cd08410 C2B_Synaptotagmin-17 C2 domain second repeat present in Synaptotagmin 17. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-
Probab=99.51 E-value=1.3e-13 Score=111.90 Aligned_cols=89 Identities=27% Similarity=0.511 Sum_probs=75.5
Q ss_pred eeeEEEEEEEeeecCCCCCCC-CCCcEEEEEEC--C---eEeeeeeecCCCCCcccceeEEEecC---CCCcEEEEEEEc
Q 021294 204 FVGLIKVNVVKGTNLAVRDVM-TSDPYVILALG--H---QTVKTRVIKSNLNPVWNESLMLSIPE---NIPPLKVLVYDK 274 (314)
Q Consensus 204 ~~g~L~V~v~~a~~L~~~d~~-~~dPyv~v~l~--~---~~~kT~~~~~tlnP~w~e~~~f~v~~---~~~~L~i~v~d~ 274 (314)
..+.|.|+|++|++|+..+.. .+||||++.+. . .+.+|+++++++||.|||.|.|.+.. ....|.|+|||+
T Consensus 12 ~~~~L~V~vi~a~~L~~~d~~g~~DPyV~v~l~~~~~~~~~~kT~v~~~t~nP~wnE~F~f~i~~~~l~~~~l~~~V~d~ 91 (135)
T cd08410 12 SAGRLNVDIIRAKQLLQTDMSQGSDPFVKIQLVHGLKLIKTKKTSCMRGTIDPFYNESFSFKVPQEELENVSLVFTVYGH 91 (135)
T ss_pred CCCeEEEEEEEecCCCcccCCCCCCeEEEEEEEcCCcccceEcCccccCCCCCccceeEEEeCCHHHhCCCEEEEEEEeC
Confidence 447899999999999988866 89999999972 2 35789999999999999999999854 234699999999
Q ss_pred CCCCCCceeEEEEEeCcc
Q 021294 275 DTFTTDDFMGDAEIDIQP 292 (314)
Q Consensus 275 d~~~~dd~iG~~~v~l~~ 292 (314)
+..+++++||++.+....
T Consensus 92 d~~~~~~~iG~~~l~~~~ 109 (135)
T cd08410 92 NVKSSNDFIGRIVIGQYS 109 (135)
T ss_pred CCCCCCcEEEEEEEcCcc
Confidence 999999999998866543
No 95
>cd04017 C2D_Ferlin C2 domain fourth repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme
Probab=99.50 E-value=2.3e-13 Score=110.44 Aligned_cols=83 Identities=28% Similarity=0.549 Sum_probs=73.6
Q ss_pred EEEEEEEeeecCCCCCCC-CCCcEEEEEECCeEeeeeeecCCCCCcccceeEEEecC----------CCCcEEEEEEEcC
Q 021294 207 LIKVNVVKGTNLAVRDVM-TSDPYVILALGHQTVKTRVIKSNLNPVWNESLMLSIPE----------NIPPLKVLVYDKD 275 (314)
Q Consensus 207 ~L~V~v~~a~~L~~~d~~-~~dPyv~v~l~~~~~kT~~~~~tlnP~w~e~~~f~v~~----------~~~~L~i~v~d~d 275 (314)
.|.|.|++|++|+..+.. .+||||++.++.+..+|+++++++||.|||.|.|.+.. ....|.|+|||++
T Consensus 2 ~l~v~V~~a~~L~~~d~~g~~dpyv~v~~~~~~~kT~v~~~t~nP~Wne~~~f~~~~~~~~~~~~~~~~~~l~v~V~d~d 81 (135)
T cd04017 2 QLRAYIYQARDLLAADKSGLSDPFARVSFLNQSQETEVIKETLSPTWDQTLIFDEVELYGSPEEIAQNPPLVVVELFDQD 81 (135)
T ss_pred EEEEEEEEeecCcCCCCCCCCCCEEEEEECCeeeEeeeEcCCCCCccCcEEEEeeeeccCChHHhhcCCCEEEEEEEeCc
Confidence 488999999999998876 89999999999999999999999999999999997421 1246899999999
Q ss_pred CCCCCceeEEEEEe
Q 021294 276 TFTTDDFMGDAEID 289 (314)
Q Consensus 276 ~~~~dd~iG~~~v~ 289 (314)
..++|++||++.+.
T Consensus 82 ~~~~d~~iG~~~i~ 95 (135)
T cd04017 82 SVGKDEFLGRSVAK 95 (135)
T ss_pred CCCCCccceEEEee
Confidence 99999999999873
No 96
>cd08409 C2B_Synaptotagmin-15 C2 domain second repeat present in Synaptotagmin 15. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 id
Probab=99.50 E-value=8.2e-14 Score=113.35 Aligned_cols=92 Identities=20% Similarity=0.295 Sum_probs=78.2
Q ss_pred eeEEEEEEEeeecCCCCCCCCCCcEEEEEECC-----eEeeeeeecCCCCCcccceeEEEecC---CCCcEEEEEEEcCC
Q 021294 205 VGLIKVNVVKGTNLAVRDVMTSDPYVILALGH-----QTVKTRVIKSNLNPVWNESLMLSIPE---NIPPLKVLVYDKDT 276 (314)
Q Consensus 205 ~g~L~V~v~~a~~L~~~d~~~~dPyv~v~l~~-----~~~kT~~~~~tlnP~w~e~~~f~v~~---~~~~L~i~v~d~d~ 276 (314)
.+.|.|.|++|++|+..+...+||||++.+.. .+.+|++++++.||.|||.|.|.++. ....|.|+||+++.
T Consensus 14 ~~~L~V~V~~a~nL~~~~~~~~d~yVkv~l~~~~~~~~~~kT~v~~~~~nP~fnE~F~f~i~~~~l~~~~L~~~V~~~~~ 93 (137)
T cd08409 14 LNRLTVVVLRARGLRQLDHAHTSVYVKVSLMIHNKVVKTKKTEVVDGAASPSFNESFSFKVTSRQLDTASLSLSVMQSGG 93 (137)
T ss_pred CCeEEEEEEEecCCCcccCCCCCeEEEEEEEECCEEeeeeecccEeCCCCCcccceEEEECCHHHhCccEEEEEEEeCCC
Confidence 46899999999999988844899999999832 35689999999999999999999864 33679999999999
Q ss_pred CCCCceeEEEEEeCcccccc
Q 021294 277 FTTDDFMGDAEIDIQPLVTA 296 (314)
Q Consensus 277 ~~~dd~iG~~~v~l~~l~~~ 296 (314)
.+++++||++.+.......+
T Consensus 94 ~~~~~~lG~v~ig~~~~~~~ 113 (137)
T cd08409 94 VRKSKLLGRVVLGPFMYARG 113 (137)
T ss_pred CCCcceEEEEEECCcccCCC
Confidence 99999999999987655433
No 97
>cd08686 C2_ABR C2 domain in the Active BCR (Breakpoint cluster region) Related protein. The ABR protein is similar to the breakpoint cluster region protein. It has homology to guanine nucleotide exchange proteins and GTPase-activating proteins (GAPs). ABR is expressed primarily in the brain, but also includes non-neuronal tissues such as the heart. It has been associated with human diseases such as Miller-Dieker syndrome in which mental retardation and malformations of the heart are present. ABR contains a RhoGEF domain and a PH-like domain upstream of its C2 domain and a RhoGAP domain downstream of this domain. A few members also contain a Bcr-Abl oncoprotein oligomerization domain at the very N-terminal end. Splice variants of ABR have been identified. ABR is found in a wide variety of organisms including chimpanzee, dog, mouse, rat, fruit fly, and mosquito. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arr
Probab=99.49 E-value=2.6e-13 Score=106.30 Aligned_cols=80 Identities=29% Similarity=0.557 Sum_probs=68.6
Q ss_pred EEEEEEeeecCCCCCCCCCCcEEEEEECC-----eEeeeeeecCCCCCcccceeEEEecCCCCcEEEEEEEc-------C
Q 021294 208 IKVNVVKGTNLAVRDVMTSDPYVILALGH-----QTVKTRVIKSNLNPVWNESLMLSIPENIPPLKVLVYDK-------D 275 (314)
Q Consensus 208 L~V~v~~a~~L~~~d~~~~dPyv~v~l~~-----~~~kT~~~~~tlnP~w~e~~~f~v~~~~~~L~i~v~d~-------d 275 (314)
|.|+|.+|++|+. .+||||++.++. ...+|+++++++||+|||.|.|.+.. ...|.+.|||+ |
T Consensus 1 L~V~V~~A~~L~~----~sDPYV~l~v~~~~~~~~~~KTk~i~~TlnPvWnE~F~i~l~~-s~~L~~~v~d~~~~~~~~d 75 (118)
T cd08686 1 LNVIVHSAQGFKQ----SANLYCTLEVDSFGYFVKKAKTRVCRDTTEPNWNEEFEIELEG-SQTLRILCYEKCYSKVKLD 75 (118)
T ss_pred CEEEEEeCCCCCC----CCCCEEEEEEcCccccceeeeeeeecCCCCCccceEEEEEeCC-CCEEEEEEEEccccccccc
Confidence 5799999999963 479999998842 45899999999999999999999964 67999999998 4
Q ss_pred CCCCCceeEEEEEeCcc
Q 021294 276 TFTTDDFMGDAEIDIQP 292 (314)
Q Consensus 276 ~~~~dd~iG~~~v~l~~ 292 (314)
..+.|+++|.+.+.|..
T Consensus 76 ~~~~d~~~G~g~i~Ld~ 92 (118)
T cd08686 76 GEGTDAIMGKGQIQLDP 92 (118)
T ss_pred ccCcccEEEEEEEEECH
Confidence 66889999888888763
No 98
>cd04021 C2_E3_ubiquitin_ligase C2 domain present in E3 ubiquitin ligase. E3 ubiquitin ligase is part of the ubiquitylation mechanism responsible for controlling surface expression of membrane proteins. The sequential action of several enzymes are involved: ubiquitin-activating enzyme E1, ubiquitin-conjugating enzyme E2, and ubiquitin-protein ligase E3 which is responsible for substrate recognition and promoting the transfer of ubiquitin to the target protein. E3 ubiquitin ligase is composed of an N-terminal C2 domain, 4 WW domains, and a HECTc domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction e
Probab=99.48 E-value=4.6e-13 Score=107.24 Aligned_cols=89 Identities=25% Similarity=0.456 Sum_probs=77.1
Q ss_pred EEEEEEEeeecCCCCCCCCCCcEEEEEECCe-EeeeeeecCCCCCcccceeEEEecCCCCcEEEEEEEcCCCCCCceeEE
Q 021294 207 LIKVNVVKGTNLAVRDVMTSDPYVILALGHQ-TVKTRVIKSNLNPVWNESLMLSIPENIPPLKVLVYDKDTFTTDDFMGD 285 (314)
Q Consensus 207 ~L~V~v~~a~~L~~~d~~~~dPyv~v~l~~~-~~kT~~~~~tlnP~w~e~~~f~v~~~~~~L~i~v~d~d~~~~dd~iG~ 285 (314)
.|.|+|++|..+.......+||||++.++++ ..+|+++++++||.|+|.|.|.+.. ...|.|+|||++..+.+++||+
T Consensus 3 ~L~V~i~~a~l~~~~~~~~~dPyv~v~~~~~~~~kT~v~~~t~~P~Wne~f~~~~~~-~~~l~~~V~d~~~~~~~~~iG~ 81 (125)
T cd04021 3 QLQITVESAKLKSNSKSFKPDPYVEVTVDGQPPKKTEVSKKTSNPKWNEHFTVLVTP-QSTLEFKVWSHHTLKADVLLGE 81 (125)
T ss_pred eEEEEEEeeECCCCCcCCCCCeEEEEEECCcccEEeeeeCCCCCCccccEEEEEeCC-CCEEEEEEEeCCCCCCCcEEEE
Confidence 5889999998444333338999999999877 8899999999999999999999864 4689999999999999999999
Q ss_pred EEEeCcccccc
Q 021294 286 AEIDIQPLVTA 296 (314)
Q Consensus 286 ~~v~l~~l~~~ 296 (314)
+.++|.++...
T Consensus 82 ~~i~l~~l~~~ 92 (125)
T cd04021 82 ASLDLSDILKN 92 (125)
T ss_pred EEEEHHHhHhh
Confidence 99999998754
No 99
>cd04035 C2A_Rabphilin_Doc2 C2 domain first repeat present in Rabphilin and Double C2 domain. Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain
Probab=99.48 E-value=4.6e-13 Score=106.77 Aligned_cols=93 Identities=30% Similarity=0.535 Sum_probs=79.2
Q ss_pred eeEEEEEEEeeecCCCCCCC-CCCcEEEEEEC-----CeEeeeeeecCCCCCcccceeEEE-ecC---CCCcEEEEEEEc
Q 021294 205 VGLIKVNVVKGTNLAVRDVM-TSDPYVILALG-----HQTVKTRVIKSNLNPVWNESLMLS-IPE---NIPPLKVLVYDK 274 (314)
Q Consensus 205 ~g~L~V~v~~a~~L~~~d~~-~~dPyv~v~l~-----~~~~kT~~~~~tlnP~w~e~~~f~-v~~---~~~~L~i~v~d~ 274 (314)
.+.|.|+|++|++|+..+.. .+||||++.+. ....+|+++++++||.|+|.|.|. +.. ....|.|+|||+
T Consensus 14 ~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~~~~~~~~~~~~rT~v~~~~~~P~Wne~f~f~~~~~~~~~~~~l~~~v~d~ 93 (123)
T cd04035 14 NSALHCTIIRAKGLKAMDANGLSDPYVKLNLLPGASKATKLRTKTVHKTRNPEFNETLTYYGITEEDIQRKTLRLLVLDE 93 (123)
T ss_pred CCEEEEEEEEeeCCCCCCCCCCCCceEEEEEecCCCCCCceeeeeecCCCCCCccceEEEcCCCHHHhCCCEEEEEEEEc
Confidence 46899999999999988766 88999999982 246899999999999999999996 332 246799999999
Q ss_pred CCCCCCceeEEEEEeCcccccccc
Q 021294 275 DTFTTDDFMGDAEIDIQPLVTAAR 298 (314)
Q Consensus 275 d~~~~dd~iG~~~v~l~~l~~~~~ 298 (314)
+.. .+++||++.++|.+|..+..
T Consensus 94 ~~~-~~~~iG~~~i~l~~l~~~~~ 116 (123)
T cd04035 94 DRF-GNDFLGETRIPLKKLKPNQT 116 (123)
T ss_pred CCc-CCeeEEEEEEEcccCCCCcc
Confidence 988 88999999999999986543
No 100
>cd00276 C2B_Synaptotagmin C2 domain second repeat present in Synaptotagmin. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. There are several classes of Synaptotagmins. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distin
Probab=99.46 E-value=1.5e-13 Score=110.89 Aligned_cols=87 Identities=33% Similarity=0.492 Sum_probs=77.4
Q ss_pred eEEEEEEEeeecCCCCCCC-CCCcEEEEEECC-----eEeeeeeecCCCCCcccceeEEEecCC---CCcEEEEEEEcCC
Q 021294 206 GLIKVNVVKGTNLAVRDVM-TSDPYVILALGH-----QTVKTRVIKSNLNPVWNESLMLSIPEN---IPPLKVLVYDKDT 276 (314)
Q Consensus 206 g~L~V~v~~a~~L~~~d~~-~~dPyv~v~l~~-----~~~kT~~~~~tlnP~w~e~~~f~v~~~---~~~L~i~v~d~d~ 276 (314)
+.|.|+|++|++|+..+.. ..||||++.+.. ...+|++++++.||.|||+|.|.+... ...|.|+|||++.
T Consensus 14 ~~L~V~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~~T~~~~~~~~P~wne~f~f~i~~~~l~~~~l~~~v~d~~~ 93 (134)
T cd00276 14 ERLTVVVLKARNLPPSDGKGLSDPYVKVSLLQGGKKLKKKKTSVKKGTLNPVFNEAFSFDVPAEQLEEVSLVITVVDKDS 93 (134)
T ss_pred CEEEEEEEEeeCCCCccCCCCCCcEEEEEEEcCCeEeeeecCcceecCCCCeeeeeEEEECCHHHhCCcEEEEEEEecCC
Confidence 6899999999999988755 899999999843 256899999999999999999998653 4789999999999
Q ss_pred CCCCceeEEEEEeCcc
Q 021294 277 FTTDDFMGDAEIDIQP 292 (314)
Q Consensus 277 ~~~dd~iG~~~v~l~~ 292 (314)
.+.+++||.+.+++.+
T Consensus 94 ~~~~~~lG~~~i~l~~ 109 (134)
T cd00276 94 VGRNEVIGQVVLGPDS 109 (134)
T ss_pred CCCCceeEEEEECCCC
Confidence 8899999999999999
No 101
>cd08691 C2_NEDL1-like C2 domain present in NEDL1 (NEDD4-like ubiquitin protein ligase-1). NEDL1 (AKA HECW1(HECT, C2 and WW domain containing E3 ubiquitin protein ligase 1)) is a newly identified HECT-type E3 ubiquitin protein ligase highly expressed in favorable neuroblastomas. In vertebrates it is found primarily in neuronal tissues, including the spinal cord. NEDL1 is thought to normally function in the quality control of cellular proteins by eliminating misfolded proteins. This is thought to be accomplished via a mechanism analogous to that of ER-associated degradation by forming tight complexes and aggregating misfolded proteins that have escaped ubiquitin-mediated degradation. NEDL1, is composed of a C2 domain, two WW domains, and a ubiquitin ligase Hect domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are C
Probab=99.45 E-value=9.3e-13 Score=106.91 Aligned_cols=89 Identities=25% Similarity=0.469 Sum_probs=75.4
Q ss_pred EEEEEEEeeecCCCCCCC-CCCcEEEEEEC-------------CeEeeeeeecCCCCCcc-cceeEEEecCCCCcEEEEE
Q 021294 207 LIKVNVVKGTNLAVRDVM-TSDPYVILALG-------------HQTVKTRVIKSNLNPVW-NESLMLSIPENIPPLKVLV 271 (314)
Q Consensus 207 ~L~V~v~~a~~L~~~d~~-~~dPyv~v~l~-------------~~~~kT~~~~~tlnP~w-~e~~~f~v~~~~~~L~i~v 271 (314)
++.|.+++|++|+ .+.. .+||||++.+. .+..+|+++++++||.| ||.|.|.+.. ...|.|+|
T Consensus 2 ~~~~~~~~A~~L~-~~~fg~~DPyvki~~~~~~~~~~~~~~~~~~~~kT~v~~~tlnP~W~nE~f~f~v~~-~~~L~v~V 79 (137)
T cd08691 2 SFSLSGLQARNLK-KGMFFNPDPYVKISIQPGKRHIFPALPHHGQECRTSIVENTINPVWHREQFVFVGLP-TDVLEIEV 79 (137)
T ss_pred EEEEEEEEeCCCC-CccCCCCCceEEEEEECCCcccccccccccceeeeeeEcCCCCCceEceEEEEEcCC-CCEEEEEE
Confidence 5789999999998 5554 89999999993 24689999999999999 9999999864 46899999
Q ss_pred EEcCCCCC---CceeEEEEEeCccccccc
Q 021294 272 YDKDTFTT---DDFMGDAEIDIQPLVTAA 297 (314)
Q Consensus 272 ~d~d~~~~---dd~iG~~~v~l~~l~~~~ 297 (314)
||++..+. +++||++.++|.+++.+.
T Consensus 80 ~D~~~~~~~~~~d~lG~~~i~l~~l~~~~ 108 (137)
T cd08691 80 KDKFAKSRPIIRRFLGKLSIPVQRLLERH 108 (137)
T ss_pred EecCCCCCccCCceEEEEEEEHHHhcccc
Confidence 99875443 799999999999998664
No 102
>cd04047 C2B_Copine C2 domain second repeat in Copine. There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 dom
Probab=99.44 E-value=6.3e-13 Score=103.81 Aligned_cols=85 Identities=29% Similarity=0.557 Sum_probs=72.3
Q ss_pred EEEEeeecCCCCCCC-CCCcEEEEEECC------eEeeeeeecCCCCCcccceeEEEecC-----CCCcEEEEEEEcCCC
Q 021294 210 VNVVKGTNLAVRDVM-TSDPYVILALGH------QTVKTRVIKSNLNPVWNESLMLSIPE-----NIPPLKVLVYDKDTF 277 (314)
Q Consensus 210 V~v~~a~~L~~~d~~-~~dPyv~v~l~~------~~~kT~~~~~tlnP~w~e~~~f~v~~-----~~~~L~i~v~d~d~~ 277 (314)
+..++|++|+..+.. .+||||++.+.. ..++|+++++++||.|+ .|.|.+.. ....|.|+|||++..
T Consensus 4 ~~~i~a~~L~~~d~~~~~DPyv~v~~~~~~~~~~~~~kT~vi~~t~nP~Wn-~f~~~~~~l~~~~~~~~l~~~V~d~d~~ 82 (110)
T cd04047 4 ELQFSGKKLDKKDFFGKSDPFLEISRQSEDGTWVLVYRTEVIKNTLNPVWK-PFTIPLQKLCNGDYDRPIKIEVYDYDSS 82 (110)
T ss_pred EEEEEeCCCCCCCCCCCCCeeEEEEEECCCCCEEEEEeeeEeccCCCCceE-EEEEEHHHhcCCCcCCEEEEEEEEeCCC
Confidence 456789999988876 899999999843 25899999999999999 68887532 256899999999999
Q ss_pred CCCceeEEEEEeCccccc
Q 021294 278 TTDDFMGDAEIDIQPLVT 295 (314)
Q Consensus 278 ~~dd~iG~~~v~l~~l~~ 295 (314)
++|++||++.+++.+|..
T Consensus 83 ~~d~~iG~~~~~l~~l~~ 100 (110)
T cd04047 83 GKHDLIGEFETTLDELLK 100 (110)
T ss_pred CCCcEEEEEEEEHHHHhc
Confidence 999999999999999973
No 103
>cd04013 C2_SynGAP_like C2 domain present in Ras GTPase activating protein (GAP) family. SynGAP, GAP1, RasGAP, and neurofibromin are all members of the Ras-specific GAP (GTPase-activating protein) family. SynGAP regulates the MAP kinase signaling pathway and is critical for cognition and synapse function. Mutations in this gene causes mental retardation in humans. SynGAP contains a PH-like domain, a C2 domain, and a Ras-GAP domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at leas
Probab=99.40 E-value=4.1e-12 Score=103.87 Aligned_cols=102 Identities=13% Similarity=0.164 Sum_probs=83.3
Q ss_pred eeeeeEEEEEEEeeecCCCCCCCCCCcEEEEEECCeE-eeeeeecCCCCCcccceeEEEecCCCCcEEEEEEEcCC-C--
Q 021294 202 VEFVGLIKVNVVKGTNLAVRDVMTSDPYVILALGHQT-VKTRVIKSNLNPVWNESLMLSIPENIPPLKVLVYDKDT-F-- 277 (314)
Q Consensus 202 ~e~~g~L~V~v~~a~~L~~~d~~~~dPyv~v~l~~~~-~kT~~~~~tlnP~w~e~~~f~v~~~~~~L~i~v~d~d~-~-- 277 (314)
......|.|.|++|++|+.++ +|||.+.+++.. .||+++.++.||.|+|.|.|........|.|.||..+. .
T Consensus 7 ~R~~~sL~v~V~EAk~Lp~~~----~~Y~~i~Ld~~~vaRT~v~~~~~nP~W~E~F~f~~~~~~~~l~v~v~k~~~~~~~ 82 (146)
T cd04013 7 RRTENSLKLWIIEAKGLPPKK----RYYCELCLDKTLYARTTSKLKTDTLFWGEHFEFSNLPPVSVITVNLYRESDKKKK 82 (146)
T ss_pred eEEEEEEEEEEEEccCCCCcC----CceEEEEECCEEEEEEEEEcCCCCCcceeeEEecCCCcccEEEEEEEEccCcccc
Confidence 345568999999999999865 799999999887 59999999999999999999876556779999986543 2
Q ss_pred -CCCceeEEEEEeCccccccccccCcccccC
Q 021294 278 -TTDDFMGDAEIDIQPLVTAARACETPISMS 307 (314)
Q Consensus 278 -~~dd~iG~~~v~l~~l~~~~~~~~~~~~~~ 307 (314)
..+++||.+.|++..+..+.....|..+..
T Consensus 83 ~~~~~~IG~V~Ip~~~l~~~~~ve~Wfpl~~ 113 (146)
T cd04013 83 KDKSQLIGTVNIPVTDVSSRQFVEKWYPVST 113 (146)
T ss_pred ccCCcEEEEEEEEHHHhcCCCcccEEEEeec
Confidence 257899999999999987665555555543
No 104
>cd00275 C2_PLC_like C2 domain present in Phosphoinositide-specific phospholipases C (PLC). PLCs are involved in the hydrolysis of phosphatidylinositol-4,5-bisphosphate (PIP2) to d-myo-inositol-1,4,5-trisphosphate (1,4,5-IP3) and sn-1,2-diacylglycerol (DAG). 1,4,5-IP3 and DAG are second messengers in eukaryotic signal transduction cascades. PLC is composed of a N-terminal PH domain followed by a series of EF hands, a catalytic TIM barrel and a C-terminal C2 domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking
Probab=99.40 E-value=3.2e-12 Score=102.30 Aligned_cols=90 Identities=31% Similarity=0.593 Sum_probs=76.8
Q ss_pred EEEEEEEeeecCCCCC---CCCCCcEEEEEE------CCeEeeeeeecCCC-CCcccceeEEEecC-CCCcEEEEEEEcC
Q 021294 207 LIKVNVVKGTNLAVRD---VMTSDPYVILAL------GHQTVKTRVIKSNL-NPVWNESLMLSIPE-NIPPLKVLVYDKD 275 (314)
Q Consensus 207 ~L~V~v~~a~~L~~~d---~~~~dPyv~v~l------~~~~~kT~~~~~tl-nP~w~e~~~f~v~~-~~~~L~i~v~d~d 275 (314)
.|.|+|++|++|+..+ ....||||++.+ .....+|+++.++. ||.|+|+|.|.+.. ....|.|+|||++
T Consensus 3 ~l~v~vi~a~~L~~~~~~~~~~~dpyv~v~l~~~~~~~~~~~kT~~~~~~~~~P~w~e~f~f~~~~~~~~~l~~~V~d~~ 82 (128)
T cd00275 3 TLTIKIISGQQLPKPKGDKGSIVDPYVEVEIHGLPADDSAKFKTKVVKNNGFNPVWNETFEFDVTVPELAFLRFVVYDED 82 (128)
T ss_pred EEEEEEEeeecCCCCCCCCCCccCCEEEEEEEeCCCCCCCcEeeeeecCCCcCCccCCcEEEEEeCCCeEEEEEEEEeCC
Confidence 6899999999999877 338899999999 34568999988765 99999999999864 3357999999999
Q ss_pred CCCCCceeEEEEEeCccccccc
Q 021294 276 TFTTDDFMGDAEIDIQPLVTAA 297 (314)
Q Consensus 276 ~~~~dd~iG~~~v~l~~l~~~~ 297 (314)
.. ++++||.+.++|.++..+.
T Consensus 83 ~~-~~~~iG~~~~~l~~l~~g~ 103 (128)
T cd00275 83 SG-DDDFLGQACLPLDSLRQGY 103 (128)
T ss_pred CC-CCcEeEEEEEEhHHhcCce
Confidence 88 8999999999999996554
No 105
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=99.35 E-value=1.8e-12 Score=140.25 Aligned_cols=103 Identities=20% Similarity=0.354 Sum_probs=87.8
Q ss_pred eeeeeEEEEEEEeeecCCCCCCCCCCcEEEEEECCe-EeeeeeecCCCCCcccceeEEEecC--CCCcEEEEEEEcCCCC
Q 021294 202 VEFVGLIKVNVVKGTNLAVRDVMTSDPYVILALGHQ-TVKTRVIKSNLNPVWNESLMLSIPE--NIPPLKVLVYDKDTFT 278 (314)
Q Consensus 202 ~e~~g~L~V~v~~a~~L~~~d~~~~dPyv~v~l~~~-~~kT~~~~~tlnP~w~e~~~f~v~~--~~~~L~i~v~d~d~~~ 278 (314)
....|.|.|+|.+|.+|. .++..+||||++.++++ +.+|++++++.||+|||.|+|.+.. ...+|.|+|||+|.++
T Consensus 1976 ~~~~G~L~V~V~~a~nl~-~~~~~sdPyv~l~~g~~~~~kTkvvk~~~nP~Wne~f~~~~~~p~~~~~l~iev~d~d~f~ 2054 (2102)
T PLN03200 1976 QCLPGSLTVTIKRGNNLK-QSMGNTNAFCKLTLGNGPPRQTKVVSHSSSPEWKEGFTWAFDSPPKGQKLHISCKSKNTFG 2054 (2102)
T ss_pred hhCCcceEEEEeeccccc-cccCCCCCeEEEEECCCCcccccccCCCCCCCcccceeeeecCCCCCCceEEEEEecCccC
Confidence 356799999999999998 56669999999999976 7899999999999999999977654 4578999999999995
Q ss_pred CCceeEEEEEeCccccccccccCccccc
Q 021294 279 TDDFMGDAEIDIQPLVTAARACETPISM 306 (314)
Q Consensus 279 ~dd~iG~~~v~l~~l~~~~~~~~~~~~~ 306 (314)
+ +.+|.+.++|.++..+....++..+.
T Consensus 2055 k-d~~G~~~i~l~~vv~~~~~~~~~~L~ 2081 (2102)
T PLN03200 2055 K-SSLGKVTIQIDRVVMEGTYSGEYSLN 2081 (2102)
T ss_pred C-CCCceEEEEHHHHhcCceeeeeeecC
Confidence 5 59999999999999766665555544
No 106
>PLN03008 Phospholipase D delta
Probab=99.35 E-value=2.8e-12 Score=128.25 Aligned_cols=83 Identities=29% Similarity=0.520 Sum_probs=71.8
Q ss_pred CCCcEEEEEECCe-EeeeeeecCCCCCcccceeEEEecCCCCcEEEEEEEcCCCCCCceeEEEEEeCccccccccccCcc
Q 021294 225 TSDPYVILALGHQ-TVKTRVIKSNLNPVWNESLMLSIPENIPPLKVLVYDKDTFTTDDFMGDAEIDIQPLVTAARACETP 303 (314)
Q Consensus 225 ~~dPyv~v~l~~~-~~kT~~~~~tlnP~w~e~~~f~v~~~~~~L~i~v~d~d~~~~dd~iG~~~v~l~~l~~~~~~~~~~ 303 (314)
.+||||+|.++++ ..+|+++++++||+|||.|+|.+......|.|+|||+|.++ +++||++.|+|.+|..+.....|.
T Consensus 76 tSDPYV~I~Lg~~rv~RTrVi~n~~NPvWNE~F~f~vah~~s~L~f~VkD~D~~g-aD~IG~a~IPL~~L~~Ge~vd~Wl 154 (868)
T PLN03008 76 TSDPYVTVVVPQATLARTRVLKNSQEPLWDEKFNISIAHPFAYLEFQVKDDDVFG-AQIIGTAKIPVRDIASGERISGWF 154 (868)
T ss_pred CCCceEEEEECCcceeeEEeCCCCCCCCcceeEEEEecCCCceEEEEEEcCCccC-CceeEEEEEEHHHcCCCCceEEEE
Confidence 5699999999876 46999999999999999999999876678999999999997 589999999999999887766665
Q ss_pred cccCC
Q 021294 304 ISMSP 308 (314)
Q Consensus 304 ~~~~~ 308 (314)
.++..
T Consensus 155 ~Ll~~ 159 (868)
T PLN03008 155 PVLGA 159 (868)
T ss_pred Ecccc
Confidence 55443
No 107
>PF00168 C2: C2 domain; InterPro: IPR000008 The C2 domain is a Ca2+-dependent membrane-targeting module found in many cellular proteins involved in signal transduction or membrane trafficking. C2 domains are unique among membrane targeting domains in that they show wide range of lipid selectivity for the major components of cell membranes, including phosphatidylserine and phosphatidylcholine. This C2 domain is about 116 amino-acid residues and is located between the two copies of the C1 domain in Protein Kinase C (that bind phorbol esters and diacylglycerol) (see PDOC00379 from PROSITEDOC) and the protein kinase catalytic domain (see PDOC00100 from PROSITEDOC). Regions with significant homology [] to the C2-domain have been found in many proteins. The C2 domain is thought to be involved in calcium-dependent phospholipid binding [] and in membrane targetting processes such as subcellular localisation. The 3D structure of the C2 domain of synaptotagmin has been reported [], the domain forms an eight-stranded beta sandwich constructed around a conserved 4-stranded motif, designated a C2 key []. Calcium binds in a cup-shaped depression formed by the N- and C-terminal loops of the C2-key motif. Structural analyses of several C2 domains have shown them to consist of similar ternary structures in which three Ca2+-binding loops are located at the end of an 8 stranded antiparallel beta sandwich. ; GO: 0005515 protein binding; PDB: 1RSY_A 1BYN_A 3NSJ_A 3QR1_D 3HN8_C 1DQV_A 3M7F_B 3KWU_A 3KWT_A 1V27_A ....
Probab=99.35 E-value=5.2e-12 Score=92.99 Aligned_cols=80 Identities=33% Similarity=0.651 Sum_probs=70.7
Q ss_pred EEEEEEeeecCCCCCCC-CCCcEEEEEECC---eEeeeeeecCCCCCcccceeEEEecC-CCCcEEEEEEEcCCCCCCce
Q 021294 208 IKVNVVKGTNLAVRDVM-TSDPYVILALGH---QTVKTRVIKSNLNPVWNESLMLSIPE-NIPPLKVLVYDKDTFTTDDF 282 (314)
Q Consensus 208 L~V~v~~a~~L~~~d~~-~~dPyv~v~l~~---~~~kT~~~~~tlnP~w~e~~~f~v~~-~~~~L~i~v~d~d~~~~dd~ 282 (314)
|.|+|.+|++|+..+.. ..+|||++.++. ...+|+++.++.+|.|+|.|.|.+.. ....|.|+|||++..+.+++
T Consensus 1 L~v~I~~a~~L~~~~~~~~~~~yv~v~~~~~~~~~~~T~~~~~~~~P~w~e~~~~~~~~~~~~~l~~~V~~~~~~~~~~~ 80 (85)
T PF00168_consen 1 LTVTIHSARNLPSKDSNGKPDPYVRVSVNGSESTKYKTKVKKNTSNPVWNEEFEFPLDDPDLDSLSFEVWDKDSFGKDEL 80 (85)
T ss_dssp EEEEEEEEESSSSSSTTSSBEEEEEEEEETTTCEEEEECCBSSBSSEEEEEEEEEEESHGCGTEEEEEEEEETSSSSEEE
T ss_pred CEEEEEEEECCCCcccCCcccccceeecceeeeeeeeeeeeeccccceeeeeeeeeeecccccceEEEEEECCCCCCCCE
Confidence 78999999999987755 889999999966 67999999999999999999999643 45569999999999999999
Q ss_pred eEEEE
Q 021294 283 MGDAE 287 (314)
Q Consensus 283 iG~~~ 287 (314)
||++.
T Consensus 81 iG~~~ 85 (85)
T PF00168_consen 81 IGEVK 85 (85)
T ss_dssp EEEEE
T ss_pred EEEEC
Confidence 99873
No 108
>cd04052 C2B_Tricalbin-like C2 domain second repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.33 E-value=7.8e-12 Score=97.94 Aligned_cols=82 Identities=27% Similarity=0.399 Sum_probs=68.0
Q ss_pred CCCcEEEEEECCe-EeeeeeecCCCCCcccceeEEEecC-CCCcEEEEEEEcCCCCCCceeEEEEEeCccccccccccCc
Q 021294 225 TSDPYVILALGHQ-TVKTRVIKSNLNPVWNESLMLSIPE-NIPPLKVLVYDKDTFTTDDFMGDAEIDIQPLVTAARACET 302 (314)
Q Consensus 225 ~~dPyv~v~l~~~-~~kT~~~~~tlnP~w~e~~~f~v~~-~~~~L~i~v~d~d~~~~dd~iG~~~v~l~~l~~~~~~~~~ 302 (314)
.+||||++.++++ ..+|++++++.||.|||.|.|.+.+ ....|.|+|||++.+ .+++||.+.++|.++.........
T Consensus 12 ~~dPYv~v~v~~~~~~kT~v~~~t~nP~Wne~f~f~v~~~~~~~l~i~v~d~~~~-~d~~iG~~~v~L~~l~~~~~~~~~ 90 (111)
T cd04052 12 LLSPYAELYLNGKLVYTTRVKKKTNNPSWNASTEFLVTDRRKSRVTVVVKDDRDR-HDPVLGSVSISLNDLIDATSVGQQ 90 (111)
T ss_pred CCCceEEEEECCEEEEEEeeeccCCCCccCCceEEEecCcCCCEEEEEEEECCCC-CCCeEEEEEecHHHHHhhhhccce
Confidence 6899999999875 5799999999999999999999876 356799999999998 899999999999999754443344
Q ss_pred ccccC
Q 021294 303 PISMS 307 (314)
Q Consensus 303 ~~~~~ 307 (314)
|..+.
T Consensus 91 w~~L~ 95 (111)
T cd04052 91 WFPLS 95 (111)
T ss_pred eEECC
Confidence 44443
No 109
>cd08383 C2A_RasGAP C2 domain (first repeat) of Ras GTPase activating proteins (GAPs). RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain either a single C2 domain or two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2
Probab=99.33 E-value=1.6e-11 Score=96.79 Aligned_cols=83 Identities=24% Similarity=0.490 Sum_probs=67.3
Q ss_pred EEEEEEeeecCCCCCCCCCCcEEEEEECCe-EeeeeeecCCCCCcccceeEEEecC---CCCcEEEEEEEcCCCCCCcee
Q 021294 208 IKVNVVKGTNLAVRDVMTSDPYVILALGHQ-TVKTRVIKSNLNPVWNESLMLSIPE---NIPPLKVLVYDKDTFTTDDFM 283 (314)
Q Consensus 208 L~V~v~~a~~L~~~d~~~~dPyv~v~l~~~-~~kT~~~~~tlnP~w~e~~~f~v~~---~~~~L~i~v~d~d~~~~dd~i 283 (314)
|.|+|++|++|+.. ..+||||++.++++ ..+|+++++ .||.|||+|.|.+.. ....|.|.+||.+....+.++
T Consensus 2 L~v~vi~a~~l~~~--~~~dpyv~v~~~~~~~~kT~~~~~-~~P~Wne~f~f~v~~~~~~~~~l~i~v~d~~~~~~~~~~ 78 (117)
T cd08383 2 LRLRILEAKNLPSK--GTRDPYCTVSLDQVEVARTKTVEK-LNPFWGEEFVFDDPPPDVTFFTLSFYNKDKRSKDRDIVI 78 (117)
T ss_pred eEEEEEEecCCCcC--CCCCceEEEEECCEEeEecceEEC-CCCcccceEEEecCCccccEEEEEEEEEecccCCCeeEE
Confidence 78999999999876 67899999999875 479999988 999999999999876 234678888988877666777
Q ss_pred EEEEEeCccc
Q 021294 284 GDAEIDIQPL 293 (314)
Q Consensus 284 G~~~v~l~~l 293 (314)
|.+.+.....
T Consensus 79 g~v~l~~~~~ 88 (117)
T cd08383 79 GKVALSKLDL 88 (117)
T ss_pred EEEEecCcCC
Confidence 7766554433
No 110
>KOG1028 consensus Ca2+-dependent phospholipid-binding protein Synaptotagmin, required for synaptic vesicle and secretory granule exocytosis [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.30 E-value=1.2e-11 Score=118.09 Aligned_cols=95 Identities=34% Similarity=0.543 Sum_probs=83.0
Q ss_pred eeeEEEEEEEeeecCCCCCCC-CCCcEEEEEEC---CeEeeeeeecCCCCCcccceeEEEecC---CCCcEEEEEEEcCC
Q 021294 204 FVGLIKVNVVKGTNLAVRDVM-TSDPYVILALG---HQTVKTRVIKSNLNPVWNESLMLSIPE---NIPPLKVLVYDKDT 276 (314)
Q Consensus 204 ~~g~L~V~v~~a~~L~~~d~~-~~dPyv~v~l~---~~~~kT~~~~~tlnP~w~e~~~f~v~~---~~~~L~i~v~d~d~ 276 (314)
....|.|+|++|.+|+..+.. .+||||++++. ..+.+|++.++++||.|||+|.|.+.. ....|.+.|||.|+
T Consensus 165 ~~~~L~V~V~qa~~Lp~~d~~g~sdpyVK~~llPdk~~k~kT~v~r~tlnP~fnEtf~f~v~~~~l~~~~L~l~V~~~dr 244 (421)
T KOG1028|consen 165 ELNLLTVRVIQAHDLPAKDRGGTSDPYVKVYLLPDKKGKFKTRVHRKTLNPVFNETFRFEVPYEELSNRVLHLSVYDFDR 244 (421)
T ss_pred cCCEEEEEEEEecCCCcccCCCCCCCeeEEEEcCCCCCcceeeeeecCcCCccccceEeecCHHHhccCEEEEEEEecCC
Confidence 346899999999999999944 79999999993 367899999999999999999999754 45789999999999
Q ss_pred CCCCceeEEEEEeCcccccccc
Q 021294 277 FTTDDFMGDAEIDIQPLVTAAR 298 (314)
Q Consensus 277 ~~~dd~iG~~~v~l~~l~~~~~ 298 (314)
++++++||++.++|..+-....
T Consensus 245 fsr~~~iGev~~~l~~~~~~~~ 266 (421)
T KOG1028|consen 245 FSRHDFIGEVILPLGEVDLLST 266 (421)
T ss_pred cccccEEEEEEecCcccccccc
Confidence 9999999999999887765554
No 111
>smart00239 C2 Protein kinase C conserved region 2 (CalB). Ca2+-binding motif present in phospholipases, protein kinases C, and synaptotamins (among others). Some do not appear to contain Ca2+-binding sites. Particular C2s appear to bind phospholipids, inositol polyphosphates, and intracellular proteins. Unusual occurrence in perforin. Synaptotagmin and PLC C2s are permuted in sequence with respect to N- and C-terminal beta strands. SMART detects C2 domains using one or both of two profiles.
Probab=99.26 E-value=8.5e-11 Score=88.61 Aligned_cols=92 Identities=39% Similarity=0.742 Sum_probs=80.3
Q ss_pred EEEEEEeeecCCCCCCC-CCCcEEEEEECCe---EeeeeeecCCCCCcccceeEEEecCC-CCcEEEEEEEcCCCCCCce
Q 021294 208 IKVNVVKGTNLAVRDVM-TSDPYVILALGHQ---TVKTRVIKSNLNPVWNESLMLSIPEN-IPPLKVLVYDKDTFTTDDF 282 (314)
Q Consensus 208 L~V~v~~a~~L~~~d~~-~~dPyv~v~l~~~---~~kT~~~~~tlnP~w~e~~~f~v~~~-~~~L~i~v~d~d~~~~dd~ 282 (314)
|.|.|+.+++|...... ..+|||++.+... ..+|+++.++.||.|+|.|.|.+... ...|.|+||+++..+.+.+
T Consensus 2 l~i~i~~~~~l~~~~~~~~~~~yv~v~~~~~~~~~~~T~~~~~~~~P~w~e~~~~~~~~~~~~~l~i~v~~~~~~~~~~~ 81 (101)
T smart00239 2 LTVKIISARNLPKKDKKGKSDPYVKVSLDGDPKEKKKTKVVKNTLNPVWNETFEFEVPPPELAELEIEVYDKDRFGRDDF 81 (101)
T ss_pred eEEEEEEeeCCCCCCCCCCCCceEEEEEeCCccceEeeeEecCCCCCcccceEEEEecCcccCEEEEEEEecCCccCCce
Confidence 67899999999887664 7899999999764 78999999999999999999998775 7889999999998878899
Q ss_pred eEEEEEeCccccccccc
Q 021294 283 MGDAEIDIQPLVTAARA 299 (314)
Q Consensus 283 iG~~~v~l~~l~~~~~~ 299 (314)
+|.+.+++.++..+...
T Consensus 82 ~G~~~~~l~~~~~~~~~ 98 (101)
T smart00239 82 IGQVTIPLSDLLLGGRH 98 (101)
T ss_pred eEEEEEEHHHcccCccc
Confidence 99999999998766543
No 112
>cd08374 C2F_Ferlin C2 domain sixth repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.20 E-value=1.2e-10 Score=93.56 Aligned_cols=91 Identities=30% Similarity=0.398 Sum_probs=76.1
Q ss_pred EEEEEEeeecCCCCCC--C---CCCcEEEEEECC---eEeeeeeecCCCC--CcccceeEEEecC---------------
Q 021294 208 IKVNVVKGTNLAVRDV--M---TSDPYVILALGH---QTVKTRVIKSNLN--PVWNESLMLSIPE--------------- 262 (314)
Q Consensus 208 L~V~v~~a~~L~~~d~--~---~~dPyv~v~l~~---~~~kT~~~~~tln--P~w~e~~~f~v~~--------------- 262 (314)
|+|.|.++++++..+. . .+||||++.+.. .+++|.++.+++| |.||++|.|++..
T Consensus 2 LRViIw~~~~v~~~~~~~~g~~~sD~yVK~~L~~~~~~kqkTDVHyrslnG~~~FNwRfvF~~~~~~~~~~~~~~~~~~~ 81 (133)
T cd08374 2 LRVIVWNTRDVLNDDTNITGEKMSDIYVKGWLDGLEEDKQKTDVHYRSLDGEGNFNWRFVFPFDYLPAEKKIVVIKKEHF 81 (133)
T ss_pred EEEEEEECcCCcccccccCCccccCeEEEEEEccCcccccccceEEecCCCCcEEeEEEEEeeecCCccceeEEEeeccc
Confidence 7899999999765443 2 489999999953 5689999999999 9999999987643
Q ss_pred ---------CCCcEEEEEEEcCCCCCCceeEEEEEeCcccccccc
Q 021294 263 ---------NIPPLKVLVYDKDTFTTDDFMGDAEIDIQPLVTAAR 298 (314)
Q Consensus 263 ---------~~~~L~i~v~d~d~~~~dd~iG~~~v~l~~l~~~~~ 298 (314)
....|.|+|||.|.++.|++||++.++|..+..+..
T Consensus 82 ~~~~~~e~~~~~~L~lqvwD~D~~s~dd~iG~~~l~l~~l~~~~~ 126 (133)
T cd08374 82 WSLDETEYKIPPKLTLQVWDNDKFSPDDFLGSLELDLSILPRPAK 126 (133)
T ss_pred cccCcceEecCcEEEEEEEECcccCCCCcceEEEEEhhhcccccc
Confidence 135689999999999999999999999999876553
No 113
>cd00030 C2 C2 domain. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions.
Probab=99.16 E-value=3.8e-10 Score=84.57 Aligned_cols=87 Identities=44% Similarity=0.820 Sum_probs=77.5
Q ss_pred EEEEEEeeecCCCCCCC-CCCcEEEEEECC-eEeeeeeecCCCCCcccceeEEEecC-CCCcEEEEEEEcCCCCCCceeE
Q 021294 208 IKVNVVKGTNLAVRDVM-TSDPYVILALGH-QTVKTRVIKSNLNPVWNESLMLSIPE-NIPPLKVLVYDKDTFTTDDFMG 284 (314)
Q Consensus 208 L~V~v~~a~~L~~~d~~-~~dPyv~v~l~~-~~~kT~~~~~tlnP~w~e~~~f~v~~-~~~~L~i~v~d~d~~~~dd~iG 284 (314)
|.|.|++|++|+..... ..+|||.+.+.. ...+|.+...+.||.|++.|.|.+.. ....|.|+||+.+....+.++|
T Consensus 1 l~v~i~~~~~l~~~~~~~~~~~~v~v~~~~~~~~~T~~~~~~~~P~w~~~~~~~~~~~~~~~l~i~v~~~~~~~~~~~ig 80 (102)
T cd00030 1 LRVTVIEARNLPAKDLNGKSDPYVKVSLGGKQKFKTKVVKNTLNPVWNETFEFPVLDPESDTLTVEVWDKDRFSKDDFLG 80 (102)
T ss_pred CEEEEEeeeCCCCcCCCCCCCcEEEEEeccCceEecceeCCCCCCcccceEEEEccCCCCCEEEEEEEecCCCCCCceeE
Confidence 46889999999775444 789999999987 88899999999999999999999977 6678999999999888889999
Q ss_pred EEEEeCcccc
Q 021294 285 DAEIDIQPLV 294 (314)
Q Consensus 285 ~~~v~l~~l~ 294 (314)
.+.+++..+.
T Consensus 81 ~~~~~l~~l~ 90 (102)
T cd00030 81 EVEIPLSELL 90 (102)
T ss_pred EEEEeHHHhh
Confidence 9999999987
No 114
>KOG1011 consensus Neurotransmitter release regulator, UNC-13 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.12 E-value=7.7e-11 Score=113.19 Aligned_cols=97 Identities=32% Similarity=0.573 Sum_probs=87.7
Q ss_pred hcceeeeeEEEEEEEeeecCCCCCCC-CCCcEEEEEECCeEeeeeeecCCCCCcccceeEEEecCCCCcEEEEEEEcCC-
Q 021294 199 VAMVEFVGLIKVNVVKGTNLAVRDVM-TSDPYVILALGHQTVKTRVIKSNLNPVWNESLMLSIPENIPPLKVLVYDKDT- 276 (314)
Q Consensus 199 ~~~~e~~g~L~V~v~~a~~L~~~d~~-~~dPyv~v~l~~~~~kT~~~~~tlnP~w~e~~~f~v~~~~~~L~i~v~d~d~- 276 (314)
.|...|...++++|+.|.+|..+|.. .+||||.+.+++.+.+|+++-..+||+|+|.|+|++++....+++.|||.|.
T Consensus 288 egsskwsakitltvlcaqgl~akdktg~sdpyvt~qv~ktkrrtrti~~~lnpvw~ekfhfechnstdrikvrvwded~d 367 (1283)
T KOG1011|consen 288 EGSSKWSAKITLTVLCAQGLIAKDKTGKSDPYVTAQVGKTKRRTRTIHQELNPVWNEKFHFECHNSTDRIKVRVWDEDND 367 (1283)
T ss_pred ccccccceeeEEeeeecccceecccCCCCCCcEEEeecccchhhHhhhhccchhhhhheeeeecCCCceeEEEEecCccc
Confidence 35567889999999999999998876 9999999999999999999999999999999999999999999999999775
Q ss_pred ----------CCCCceeEEEEEeCccccc
Q 021294 277 ----------FTTDDFMGDAEIDIQPLVT 295 (314)
Q Consensus 277 ----------~~~dd~iG~~~v~l~~l~~ 295 (314)
...|||+|++.+.+..|..
T Consensus 368 lksklrqkl~resddflgqtvievrtlsg 396 (1283)
T KOG1011|consen 368 LKSKLRQKLTRESDDFLGQTVIEVRTLSG 396 (1283)
T ss_pred HHHHHHHHhhhcccccccceeEEEEeccc
Confidence 3568999999999888753
No 115
>PLN02223 phosphoinositide phospholipase C
Probab=99.06 E-value=9.2e-10 Score=106.19 Aligned_cols=96 Identities=25% Similarity=0.490 Sum_probs=79.0
Q ss_pred eeEEEEEEEeeecCCCC-----CCC-CCCcEEEEEEC-----CeEeeeeeecCCCCCcccceeEEEecC-CCCcEEEEEE
Q 021294 205 VGLIKVNVVKGTNLAVR-----DVM-TSDPYVILALG-----HQTVKTRVIKSNLNPVWNESLMLSIPE-NIPPLKVLVY 272 (314)
Q Consensus 205 ~g~L~V~v~~a~~L~~~-----d~~-~~dPyv~v~l~-----~~~~kT~~~~~tlnP~w~e~~~f~v~~-~~~~L~i~v~ 272 (314)
...|.|+|+.|.+++.. +.. ..||||+|.+. ....+|.+..++.||.|||+|.|.+.. +...|+|+|+
T Consensus 408 ~~~L~V~Visgq~~~~~~~k~~~~~s~~DpyV~VeI~Gvp~D~~~~kT~v~nNg~nPvWne~F~F~i~~PELAlLrf~V~ 487 (537)
T PLN02223 408 VKILKVKIYMGDGWIVDFKKRIGRLSKPDLYVRISIAGVPHDEKIMKTTVKNNEWKPTWGEEFTFPLTYPDLALISFEVY 487 (537)
T ss_pred ceEEEEEEEEcccccCCcccccCCCCCCCeEEEEEEeeccCCcceeEEEeCCCCcCceecceeEEEEEccCceEEEEEEE
Confidence 35799999999987521 222 67999999993 245678888889999999999999865 4567899999
Q ss_pred EcCCCCCCceeEEEEEeCcccccccccc
Q 021294 273 DKDTFTTDDFMGDAEIDIQPLVTAARAC 300 (314)
Q Consensus 273 d~d~~~~dd~iG~~~v~l~~l~~~~~~~ 300 (314)
|+|..+.++|+|++.+|+..|..|.++.
T Consensus 488 D~D~~~~ddfiGQ~~LPv~~Lr~GyR~V 515 (537)
T PLN02223 488 DYEVSTADAFCGQTCLPVSELIEGIRAV 515 (537)
T ss_pred ecCCCCCCcEEEEEecchHHhcCCceeE
Confidence 9999889999999999999999887665
No 116
>KOG1028 consensus Ca2+-dependent phospholipid-binding protein Synaptotagmin, required for synaptic vesicle and secretory granule exocytosis [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.05 E-value=7.3e-10 Score=106.01 Aligned_cols=90 Identities=36% Similarity=0.550 Sum_probs=78.0
Q ss_pred eeeeEEEEEEEeeecCCCCCCC-CCCcEEEEEEC--C---eEeeeeeecCCCCCcccceeEEEecC---CCCcEEEEEEE
Q 021294 203 EFVGLIKVNVVKGTNLAVRDVM-TSDPYVILALG--H---QTVKTRVIKSNLNPVWNESLMLSIPE---NIPPLKVLVYD 273 (314)
Q Consensus 203 e~~g~L~V~v~~a~~L~~~d~~-~~dPyv~v~l~--~---~~~kT~~~~~tlnP~w~e~~~f~v~~---~~~~L~i~v~d 273 (314)
...|.|+|.|++|++|+.++.. ..||||++++- . .+.+|.+.++++||+|||.|.|.++. ....|.|+|||
T Consensus 295 p~~g~ltv~v~kar~L~~~~~~~~~d~~Vk~~l~~~~~~~~kkkT~~~~~~~npv~nesf~F~vp~~~l~~~~l~l~V~d 374 (421)
T KOG1028|consen 295 PTAGRLTVVVIKARNLKSMDVGGLSDPYVKVTLLDGDKRLSKKKTSVKKKTLNPVFNETFVFDVPPEQLAEVSLELTVWD 374 (421)
T ss_pred cCCCeEEEEEEEecCCCcccCCCCCCccEEEEEecCCceeeeeeeecccCCCCCcccccEEEeCCHHHhheeEEEEEEEE
Confidence 3458999999999999998887 88999999982 2 45689999999999999999999875 33578999999
Q ss_pred cCCCCCCceeEEEEEeCcc
Q 021294 274 KDTFTTDDFMGDAEIDIQP 292 (314)
Q Consensus 274 ~d~~~~dd~iG~~~v~l~~ 292 (314)
++.++.+++||.+.+....
T Consensus 375 ~d~~~~~~~iG~~~lG~~~ 393 (421)
T KOG1028|consen 375 HDTLGSNDLIGRCILGSDS 393 (421)
T ss_pred cccccccceeeEEEecCCC
Confidence 9999999999998887765
No 117
>COG5038 Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only]
Probab=98.95 E-value=1.5e-09 Score=110.85 Aligned_cols=99 Identities=37% Similarity=0.561 Sum_probs=89.7
Q ss_pred hcceeeeeEEEEEEEeeecCCCCCCC-CCCcEEEEEECCe-EeeeeeecCCCCCcccceeEEEecC-CCCcEEEEEEEcC
Q 021294 199 VAMVEFVGLIKVNVVKGTNLAVRDVM-TSDPYVILALGHQ-TVKTRVIKSNLNPVWNESLMLSIPE-NIPPLKVLVYDKD 275 (314)
Q Consensus 199 ~~~~e~~g~L~V~v~~a~~L~~~d~~-~~dPyv~v~l~~~-~~kT~~~~~tlnP~w~e~~~f~v~~-~~~~L~i~v~d~d 275 (314)
..+++-+|.|.|.+..|.+|+..|.. .+||||++.+... .++|+++++++||.|||.+.+++.. ....+.|.|+|||
T Consensus 1033 ~emv~nsG~l~I~~~~~~nl~~~d~ng~sDpfv~~~ln~k~vyktkv~KktlNPvwNEe~~i~v~~r~~D~~~i~v~Dwd 1112 (1227)
T COG5038 1033 VEMVENSGYLTIMLRSGENLPSSDENGYSDPFVKLFLNEKSVYKTKVVKKTLNPVWNEEFTIEVLNRVKDVLTINVNDWD 1112 (1227)
T ss_pred ceeecccCcEEEEEeccCCCcccccCCCCCceEEEEecceecccccchhccCCCCccccceEeeeccccceEEEEEeecc
Confidence 46788899999999999999999988 6999999999665 7899999999999999999999975 5678999999999
Q ss_pred CCCCCceeEEEEEeCccccccc
Q 021294 276 TFTTDDFMGDAEIDIQPLVTAA 297 (314)
Q Consensus 276 ~~~~dd~iG~~~v~l~~l~~~~ 297 (314)
.-.+++.||.+.++|..|..+.
T Consensus 1113 ~~~knd~lg~~~idL~~l~~~~ 1134 (1227)
T COG5038 1113 SGEKNDLLGTAEIDLSKLEPGG 1134 (1227)
T ss_pred cCCCccccccccccHhhcCcCC
Confidence 9999999999999999887543
No 118
>PLN02952 phosphoinositide phospholipase C
Probab=98.91 E-value=8e-09 Score=101.66 Aligned_cols=95 Identities=25% Similarity=0.424 Sum_probs=78.6
Q ss_pred eEEEEEEEeeecCCCC------CCC-CCCcEEEEEEC-----CeEeeeeeecCCCCCcccceeEEEecC-CCCcEEEEEE
Q 021294 206 GLIKVNVVKGTNLAVR------DVM-TSDPYVILALG-----HQTVKTRVIKSNLNPVWNESLMLSIPE-NIPPLKVLVY 272 (314)
Q Consensus 206 g~L~V~v~~a~~L~~~------d~~-~~dPyv~v~l~-----~~~~kT~~~~~tlnP~w~e~~~f~v~~-~~~~L~i~v~ 272 (314)
..|.|+|+.|.+++.. +.. ..||||+|.+- ..+.+|+++.++.||.|+|+|.|.+.. +...|.|.||
T Consensus 470 ~~L~V~VisGq~l~lp~~~~~~~~~~~~D~yV~V~i~G~p~D~~~~kTkvi~nN~nPvWnE~F~F~i~~PELAllrf~V~ 549 (599)
T PLN02952 470 KTLKVKVYLGDGWRLDFSHTHFDSYSPPDFYTKMYIVGVPADNAKKKTKIIEDNWYPAWNEEFSFPLTVPELALLRIEVR 549 (599)
T ss_pred ceEEEEEEECcccCCCCccccCCccCCCCceEEEEEeccCCCCcceeeeeccCCCCcccCCeeEEEEEcCCccEEEEEEE
Confidence 5799999999887531 111 35999999882 456799999999999999999998765 4467899999
Q ss_pred EcCCCCCCceeEEEEEeCcccccccccc
Q 021294 273 DKDTFTTDDFMGDAEIDIQPLVTAARAC 300 (314)
Q Consensus 273 d~d~~~~dd~iG~~~v~l~~l~~~~~~~ 300 (314)
|+|..+.++++|++.++|..|..|.+..
T Consensus 550 D~D~~~~ddfiGq~~lPv~~Lr~GyR~V 577 (599)
T PLN02952 550 EYDMSEKDDFGGQTCLPVSELRPGIRSV 577 (599)
T ss_pred ecCCCCCCCeEEEEEcchhHhcCCceeE
Confidence 9999889999999999999999888643
No 119
>COG5038 Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only]
Probab=98.90 E-value=5.7e-09 Score=106.70 Aligned_cols=98 Identities=30% Similarity=0.551 Sum_probs=86.8
Q ss_pred ceeeeeEEEEEEEeeecCCCCCCC---CCCcEEEEEECC-eEeeeeeecCCCCCcccceeEEEecCCCCcEEEEEEEcCC
Q 021294 201 MVEFVGLIKVNVVKGTNLAVRDVM---TSDPYVILALGH-QTVKTRVIKSNLNPVWNESLMLSIPENIPPLKVLVYDKDT 276 (314)
Q Consensus 201 ~~e~~g~L~V~v~~a~~L~~~d~~---~~dPyv~v~l~~-~~~kT~~~~~tlnP~w~e~~~f~v~~~~~~L~i~v~d~d~ 276 (314)
....+|+|.|+|.+|++|...+.. ..|||+.+.+.. ...+|++.++++||+|||+|++.+..-.++|.|+|||.+.
T Consensus 431 s~~aIGVv~vkI~sa~~lk~~d~~i~~~vDpyit~~~~~r~~gkT~v~~nt~nPvwNEt~Yi~lns~~d~L~LslyD~n~ 510 (1227)
T COG5038 431 SGTAIGVVEVKIKSAEGLKKSDSTINGTVDPYITVTFSDRVIGKTRVKKNTLNPVWNETFYILLNSFTDPLNLSLYDFNS 510 (1227)
T ss_pred cCCeeEEEEEEEeeccCcccccccccCCCCceEEEEeccccCCccceeeccCCccccceEEEEecccCCceeEEEEeccc
Confidence 567889999999999999887732 789999999843 4569999999999999999999998878899999999999
Q ss_pred CCCCceeEEEEEeCcccccccc
Q 021294 277 FTTDDFMGDAEIDIQPLVTAAR 298 (314)
Q Consensus 277 ~~~dd~iG~~~v~l~~l~~~~~ 298 (314)
..+|+.+|.+.++|..|.....
T Consensus 511 ~~sd~vvG~~~l~L~~L~~~~~ 532 (1227)
T COG5038 511 FKSDKVVGSTQLDLALLHQNPV 532 (1227)
T ss_pred cCCcceeeeEEechHHhhhccc
Confidence 9999999999999998876543
No 120
>PLN02230 phosphoinositide phospholipase C 4
Probab=98.89 E-value=7.1e-09 Score=101.85 Aligned_cols=95 Identities=22% Similarity=0.407 Sum_probs=78.9
Q ss_pred eEEEEEEEeeecCCCC------CCC-CCCcEEEEEE-----CCeEeeeeeecCCCCCcccceeEEEecC-CCCcEEEEEE
Q 021294 206 GLIKVNVVKGTNLAVR------DVM-TSDPYVILAL-----GHQTVKTRVIKSNLNPVWNESLMLSIPE-NIPPLKVLVY 272 (314)
Q Consensus 206 g~L~V~v~~a~~L~~~------d~~-~~dPyv~v~l-----~~~~~kT~~~~~tlnP~w~e~~~f~v~~-~~~~L~i~v~ 272 (314)
..|.|+|+.+.+++.. +.. ..||||+|.+ +....+|++..++.||.|+|+|.|.+.. +...|+|+|+
T Consensus 469 ~~L~V~VisGq~~~l~~~k~~~~~~s~~DpyV~Vei~Gvp~D~~~~kT~v~~n~~nP~Wneef~F~l~vPELAllRf~V~ 548 (598)
T PLN02230 469 KTLKVKVCMGDGWLLDFKKTHFDSYSPPDFFVRVGIAGAPVDEVMEKTKIEYDTWTPIWNKEFIFPLAVPELALLRVEVH 548 (598)
T ss_pred cEEEEEEEEccCccCCCccccCCCCCCCCceEEEEEEECCCCCcccceeccCCCCCCccCCeeEEEEEcCceeEEEEEEE
Confidence 5799999999987421 112 4699999998 2345688888889999999999998754 5577999999
Q ss_pred EcCCCCCCceeEEEEEeCcccccccccc
Q 021294 273 DKDTFTTDDFMGDAEIDIQPLVTAARAC 300 (314)
Q Consensus 273 d~d~~~~dd~iG~~~v~l~~l~~~~~~~ 300 (314)
|+|..+.++|+|++.+|+..|..|.++.
T Consensus 549 d~d~~~~ddfiGQ~~lPv~~Lr~GyR~V 576 (598)
T PLN02230 549 EHDINEKDDFGGQTCLPVSEIRQGIHAV 576 (598)
T ss_pred ECCCCCCCCEEEEEEcchHHhhCccceE
Confidence 9999889999999999999999988765
No 121
>PLN02222 phosphoinositide phospholipase C 2
Probab=98.86 E-value=1.4e-08 Score=99.67 Aligned_cols=95 Identities=21% Similarity=0.357 Sum_probs=78.3
Q ss_pred eEEEEEEEeeecCC--C--CC--CC-CCCcEEEEEEC-----CeEeeeeeecCCCCCcccceeEEEecC-CCCcEEEEEE
Q 021294 206 GLIKVNVVKGTNLA--V--RD--VM-TSDPYVILALG-----HQTVKTRVIKSNLNPVWNESLMLSIPE-NIPPLKVLVY 272 (314)
Q Consensus 206 g~L~V~v~~a~~L~--~--~d--~~-~~dPyv~v~l~-----~~~~kT~~~~~tlnP~w~e~~~f~v~~-~~~~L~i~v~ 272 (314)
..|.|+|+.+.+++ . .. .. ..||||+|.+. ..+.+|+++.++.||.|+|.|.|.+.. +...|+|.|+
T Consensus 452 ~~L~V~Visgq~~~l~~~~~~~~~~~~~dpyV~Vei~G~p~D~~~~rTk~v~nn~nP~W~e~f~F~i~~PeLAllRf~V~ 531 (581)
T PLN02222 452 TTLRVTIYMGEGWYFDFRHTHFDQYSPPDFYTRVGIAGVPGDTVMKKTKTLEDNWIPAWDEVFEFPLTVPELALLRLEVH 531 (581)
T ss_pred ceEEEEEEEcccccCCCCccccCCCCCCCeeEEEEEeccCCCcceeeeEecCCCCCcccCCeeEEEEEcCceeEEEEEEE
Confidence 56899999998753 1 11 12 56999999983 356799999999999999999998754 4577999999
Q ss_pred EcCCCCCCceeEEEEEeCcccccccccc
Q 021294 273 DKDTFTTDDFMGDAEIDIQPLVTAARAC 300 (314)
Q Consensus 273 d~d~~~~dd~iG~~~v~l~~l~~~~~~~ 300 (314)
|+|..+.++|+|++.+++..|..|.++.
T Consensus 532 d~D~~~~ddfigq~~lPv~~Lr~GyR~V 559 (581)
T PLN02222 532 EYDMSEKDDFGGQTCLPVWELSQGIRAF 559 (581)
T ss_pred ECCCCCCCcEEEEEEcchhhhhCccceE
Confidence 9998889999999999999999988765
No 122
>KOG2059 consensus Ras GTPase-activating protein [Signal transduction mechanisms]
Probab=98.85 E-value=3.9e-09 Score=102.68 Aligned_cols=96 Identities=23% Similarity=0.379 Sum_probs=84.8
Q ss_pred eEEEEEEEeeecCCCCCCC-CCCcEEEEEECC-eEeeeeeecCCCCCcccceeEEEecCCCCcEEEEEEEcCCCCCCcee
Q 021294 206 GLIKVNVVKGTNLAVRDVM-TSDPYVILALGH-QTVKTRVIKSNLNPVWNESLMLSIPENIPPLKVLVYDKDTFTTDDFM 283 (314)
Q Consensus 206 g~L~V~v~~a~~L~~~d~~-~~dPyv~v~l~~-~~~kT~~~~~tlnP~w~e~~~f~v~~~~~~L~i~v~d~d~~~~dd~i 283 (314)
..|.|+|.+|+||+..+.. ..||||.|.++. ...||.++.+++.|.|.|.|+|.++..-..|.|-|||+| +++|+.|
T Consensus 5 ~sl~vki~E~knL~~~~~~g~~D~yC~v~lD~E~v~RT~tv~ksL~PF~gEe~~~~iP~~F~~l~fYv~D~d-~~~D~~I 83 (800)
T KOG2059|consen 5 QSLKVKIGEAKNLPSYGPSGMRDCYCTVNLDQEEVCRTATVEKSLCPFFGEEFYFEIPRTFRYLSFYVWDRD-LKRDDII 83 (800)
T ss_pred cceeEEEeecccCCCCCCCCCcCcceEEeecchhhhhhhhhhhhcCCccccceEEecCcceeeEEEEEeccc-ccccccc
Confidence 3589999999999999887 899999999975 567999999999999999999999987788999999999 9999999
Q ss_pred EEEEEeCccccccccccCc
Q 021294 284 GDAEIDIQPLVTAARACET 302 (314)
Q Consensus 284 G~~~v~l~~l~~~~~~~~~ 302 (314)
|.+.+.=++|......+.|
T Consensus 84 GKvai~re~l~~~~~~d~W 102 (800)
T KOG2059|consen 84 GKVAIKREDLHMYPGKDTW 102 (800)
T ss_pred ceeeeeHHHHhhCCCCccc
Confidence 9999998888765533333
No 123
>KOG0169 consensus Phosphoinositide-specific phospholipase C [Signal transduction mechanisms]
Probab=98.83 E-value=7.5e-09 Score=102.03 Aligned_cols=95 Identities=23% Similarity=0.443 Sum_probs=78.8
Q ss_pred EEEEEEEeeecCCC-CC---CC-CCCcEEEEEEC-----CeEeeee-eecCCCCCcccceeEEEecC-CCCcEEEEEEEc
Q 021294 207 LIKVNVVKGTNLAV-RD---VM-TSDPYVILALG-----HQTVKTR-VIKSNLNPVWNESLMLSIPE-NIPPLKVLVYDK 274 (314)
Q Consensus 207 ~L~V~v~~a~~L~~-~d---~~-~~dPyv~v~l~-----~~~~kT~-~~~~tlnP~w~e~~~f~v~~-~~~~L~i~v~d~ 274 (314)
.|.|.|+.+.+++. .+ +. ..||||.|.+- ....+|+ +..++.||.|+|+|.|.+.. +...|+|.|+|+
T Consensus 617 tL~IkI~sGq~~~~~~~~~~~~~~~dP~v~VeI~Gvp~D~~~~~Tk~v~~NgfnP~W~e~f~F~l~vPELAliRF~V~d~ 696 (746)
T KOG0169|consen 617 TLKIKIISGQGWLPDFGKTKFGEISDPDVYVEIAGVPADCAEQKTKVVKNNGFNPIWDEEFEFQLSVPELALIRFEVHDY 696 (746)
T ss_pred eeEEEEEecCcccCCCCCCcccccCCCCEEEEEcccccchhhhhceeeccCCcCcccCCeEEEEEeccceeEEEEEEEec
Confidence 69999999997644 22 22 67999999883 3457899 55568999999999999865 557799999999
Q ss_pred CCCCCCceeEEEEEeCccccccccccC
Q 021294 275 DTFTTDDFMGDAEIDIQPLVTAARACE 301 (314)
Q Consensus 275 d~~~~dd~iG~~~v~l~~l~~~~~~~~ 301 (314)
|..++|||+|++.+|+..|..|.++..
T Consensus 697 d~~~~ddF~GQ~tlP~~~L~~GyRhVp 723 (746)
T KOG0169|consen 697 DYIGKDDFIGQTTLPVSELRQGYRHVP 723 (746)
T ss_pred CCCCcccccceeeccHHHhhCceeeee
Confidence 999999999999999999999987753
No 124
>KOG1031 consensus Predicted Ca2+-dependent phospholipid-binding protein [General function prediction only]
Probab=98.82 E-value=6.3e-09 Score=99.27 Aligned_cols=90 Identities=31% Similarity=0.592 Sum_probs=82.7
Q ss_pred eEEEEEEEeeecCCCCCCC--CCCcEEEEEECCeEeeeeeecCCCCCccc-ceeEEEecC---CCCcEEEEEEEcCCCCC
Q 021294 206 GLIKVNVVKGTNLAVRDVM--TSDPYVILALGHQTVKTRVIKSNLNPVWN-ESLMLSIPE---NIPPLKVLVYDKDTFTT 279 (314)
Q Consensus 206 g~L~V~v~~a~~L~~~d~~--~~dPyv~v~l~~~~~kT~~~~~tlnP~w~-e~~~f~v~~---~~~~L~i~v~d~d~~~~ 279 (314)
|.|-|.|..|++||.+|.. ..|.||.+.+++.+++|.+..+++||.|| +.|.|++.+ +.++|+|.+.|+|.++.
T Consensus 3 gkl~vki~a~r~lpvmdkasd~tdafveik~~n~t~ktdvf~kslnp~wnsdwfkfevddadlqdeplqi~lld~dtysa 82 (1169)
T KOG1031|consen 3 GKLGVKIKAARHLPVMDKASDLTDAFVEIKFANTTFKTDVFLKSLNPQWNSDWFKFEVDDADLQDEPLQIRLLDHDTYSA 82 (1169)
T ss_pred CcceeEEEeccCCcccccccccchheeEEEecccceehhhhhhhcCCcccccceEEecChhhhccCCeeEEEeccccccc
Confidence 6788999999999999876 78999999999999999999999999999 668899865 56899999999999999
Q ss_pred CceeEEEEEeCccccc
Q 021294 280 DDFMGDAEIDIQPLVT 295 (314)
Q Consensus 280 dd~iG~~~v~l~~l~~ 295 (314)
+|-||.+.++|.+|..
T Consensus 83 ndaigkv~i~idpl~~ 98 (1169)
T KOG1031|consen 83 NDAIGKVNIDIDPLCL 98 (1169)
T ss_pred ccccceeeeccChHHH
Confidence 9999999999998763
No 125
>KOG1264 consensus Phospholipase C [Lipid transport and metabolism]
Probab=98.78 E-value=2.8e-08 Score=98.04 Aligned_cols=93 Identities=24% Similarity=0.438 Sum_probs=78.4
Q ss_pred eEEEEEEEeeecCCCCCCCCCCcEEEEEEC-----CeE-eeeeeecCCCCCccc-ceeEEEecC-CCCcEEEEEEEcCCC
Q 021294 206 GLIKVNVVKGTNLAVRDVMTSDPYVILALG-----HQT-VKTRVIKSNLNPVWN-ESLMLSIPE-NIPPLKVLVYDKDTF 277 (314)
Q Consensus 206 g~L~V~v~~a~~L~~~d~~~~dPyv~v~l~-----~~~-~kT~~~~~tlnP~w~-e~~~f~v~~-~~~~L~i~v~d~d~~ 277 (314)
-.|.|.|+.|++|+..+.+...|||.|.+- ..+ ++|.+..+++||+|+ |.|+|.+.+ +-..|+|.|+|.|.+
T Consensus 1065 ~~lsv~vigaRHL~k~gr~i~cPfVevEiiGa~~Dt~~~~t~~V~dNGlnPiWn~e~ftFeI~nPe~A~lRF~V~eeDmf 1144 (1267)
T KOG1264|consen 1065 MTLSVKVLGARHLPKLGRSIACPFVEVEIIGAEYDTNKFKTTVVNDNGLNPIWNPEKFTFEIYNPEFAFLRFVVYEEDMF 1144 (1267)
T ss_pred eEEEEEEeeccccccCCCCccCCcEEEEEeccccCCCceEEEEeccCCCCCCCCCcceEEEeeCCceEEEEEEEeccccc
Confidence 468899999999997776677899999982 233 455667778999999 999999976 557799999999999
Q ss_pred CCCceeEEEEEeCcccccccc
Q 021294 278 TTDDFMGDAEIDIQPLVTAAR 298 (314)
Q Consensus 278 ~~dd~iG~~~v~l~~l~~~~~ 298 (314)
+...|||++.+|+..|..|.+
T Consensus 1145 s~~~FiaqA~yPv~~ik~GfR 1165 (1267)
T KOG1264|consen 1145 SDPNFLAQATYPVKAIKSGFR 1165 (1267)
T ss_pred CCcceeeeeecchhhhhccce
Confidence 999999999999998887654
No 126
>KOG1328 consensus Synaptic vesicle protein BAIAP3, involved in vesicle priming/regulation [Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms]
Probab=98.78 E-value=2.6e-09 Score=104.03 Aligned_cols=90 Identities=29% Similarity=0.510 Sum_probs=78.1
Q ss_pred eEEEEEEEeeecCCCCCCC-CCCcEEEEEECC-------eEeeeeeecCCCCCcccceeEEEecC-----CCCcEEEEEE
Q 021294 206 GLIKVNVVKGTNLAVRDVM-TSDPYVILALGH-------QTVKTRVIKSNLNPVWNESLMLSIPE-----NIPPLKVLVY 272 (314)
Q Consensus 206 g~L~V~v~~a~~L~~~d~~-~~dPyv~v~l~~-------~~~kT~~~~~tlnP~w~e~~~f~v~~-----~~~~L~i~v~ 272 (314)
..|.|.|+-|+++.+.|.+ .+||||+|.++. ..++|+|+.+++||+|+|.|.|.++. ....|.|+|.
T Consensus 947 q~L~veVlhA~diipLD~NGlSDPFVviEl~P~~~fp~v~~q~T~V~~rtLnPVfDE~FeFsVp~e~c~te~Am~~FTVM 1026 (1103)
T KOG1328|consen 947 QTLVVEVLHAKDIIPLDSNGLSDPFVVIELIPKFRFPAVPVQKTKVVSRTLNPVFDETFEFSVPPEPCSTETAMLHFTVM 1026 (1103)
T ss_pred cchhhhhhccccccccCCCCCCCCeEEEEeccccccccchhhhhhhhhccccchhhhheeeecCccccccccceEEEEee
Confidence 3566777888998888877 899999999964 34699999999999999999999965 2467999999
Q ss_pred EcCCCCCCceeEEEEEeCccccc
Q 021294 273 DKDTFTTDDFMGDAEIDIQPLVT 295 (314)
Q Consensus 273 d~d~~~~dd~iG~~~v~l~~l~~ 295 (314)
|+|-++.+||-|++.+.|+++..
T Consensus 1027 DHD~L~sNDFaGEA~L~Lg~vpG 1049 (1103)
T KOG1328|consen 1027 DHDYLRSNDFAGEAFLELGDVPG 1049 (1103)
T ss_pred ccceecccccchHHHHhhCCCCC
Confidence 99999999999999999998864
No 127
>PLN02228 Phosphoinositide phospholipase C
Probab=98.76 E-value=5e-08 Score=95.54 Aligned_cols=95 Identities=21% Similarity=0.377 Sum_probs=78.6
Q ss_pred eEEEEEEEeeecCCC---CC---CC-CCCcEEEEEE-----CCeEeeeeeecCCCCCcc-cceeEEEecC-CCCcEEEEE
Q 021294 206 GLIKVNVVKGTNLAV---RD---VM-TSDPYVILAL-----GHQTVKTRVIKSNLNPVW-NESLMLSIPE-NIPPLKVLV 271 (314)
Q Consensus 206 g~L~V~v~~a~~L~~---~d---~~-~~dPyv~v~l-----~~~~~kT~~~~~tlnP~w-~e~~~f~v~~-~~~~L~i~v 271 (314)
..|.|+|+.|.+|+. .+ .. ..||||+|.+ +....+|+++.++.||.| +|.|.|.+.. +...|+|.|
T Consensus 431 ~~L~I~ViSGq~l~lp~~~~~~~~~~~~DpyV~Vei~G~p~D~~~~rTk~~~n~~nP~W~~e~f~F~~~~pELA~lRf~V 510 (567)
T PLN02228 431 TTLKVKIYTGEGWDLDFHLTHFDQYSPPDFFVKIGIAGVPRDTVSYRTETAVDQWFPIWGNDEFLFQLRVPELALLWFKV 510 (567)
T ss_pred ceEEEEEEECCccCCCCCCCCCCCCCCCCcEEEEEEEecCCCCCcceeeccCCCCCceECCCeEEEEEEcCceeEEEEEE
Confidence 469999999998732 11 12 4799999998 234579999988899999 9999999754 456799999
Q ss_pred EEcCCCCCCceeEEEEEeCcccccccccc
Q 021294 272 YDKDTFTTDDFMGDAEIDIQPLVTAARAC 300 (314)
Q Consensus 272 ~d~d~~~~dd~iG~~~v~l~~l~~~~~~~ 300 (314)
+|+|..+.++++|++.+++..|..|.++.
T Consensus 511 ~D~d~~~~d~figq~~lPv~~Lr~GYR~V 539 (567)
T PLN02228 511 QDYDNDTQNDFAGQTCLPLPELKSGVRAV 539 (567)
T ss_pred EeCCCCCCCCEEEEEEcchhHhhCCeeEE
Confidence 99998889999999999999999988765
No 128
>cd08689 C2_fungal_Pkc1p C2 domain found in protein kinase C (Pkc1p) in Saccharomyces cerevisiae. This family is named after the protein kinase C in Saccharomyces cerevisiae, Pkc1p. Protein kinase C is a member of a family of Ser/Thr phosphotransferases that are involved in many cellular signaling pathways. PKC has two antiparallel coiled-coiled regions (ACC finger domain) (AKA PKC homology region 1 (HR1)/ Rho binding domain) upstream of the C2 domain and two C1 domains downstream. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains, like those of PKC, are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that
Probab=98.69 E-value=7e-08 Score=73.52 Aligned_cols=85 Identities=15% Similarity=0.279 Sum_probs=69.2
Q ss_pred EEEEEEeeecCCCCC---CC-CCCcEEEEEECCe-EeeeeeecCCCCCcccceeEEEecCCCCcEEEEEEEcCCCCCCce
Q 021294 208 IKVNVVKGTNLAVRD---VM-TSDPYVILALGHQ-TVKTRVIKSNLNPVWNESLMLSIPENIPPLKVLVYDKDTFTTDDF 282 (314)
Q Consensus 208 L~V~v~~a~~L~~~d---~~-~~dPyv~v~l~~~-~~kT~~~~~tlnP~w~e~~~f~v~~~~~~L~i~v~d~d~~~~dd~ 282 (314)
|.|+|..++++.-.+ +. .++|||.+.++.. +.+|+.. .||.|||.|.|.+. ....+.|.|||+.. ...-.
T Consensus 1 L~I~V~~~RdvdH~~~~~~~~~~etyV~IKved~~kaRTr~s---rnd~WnE~F~i~Vd-k~nEiel~VyDk~~-~~~~P 75 (109)
T cd08689 1 LTITITSARDVDHIASPRFSKRPETYVSIKVEDVERARTKPS---RNDRWNEDFEIPVE-KNNEEEVIVYDKGG-DQPVP 75 (109)
T ss_pred CEEEEEEEecCccccchhhccCCCcEEEEEECCEEEEeccCC---CCCcccceEEEEec-CCcEEEEEEEeCCC-Ceecc
Confidence 578899999997655 34 7899999999876 7888774 89999999999994 57889999999854 33457
Q ss_pred eEEEEEeCccccccc
Q 021294 283 MGDAEIDIQPLVTAA 297 (314)
Q Consensus 283 iG~~~v~l~~l~~~~ 297 (314)
||..-+.|++|...-
T Consensus 76 i~llW~~~sdi~Ee~ 90 (109)
T cd08689 76 VGLLWLRLSDIAEEI 90 (109)
T ss_pred eeeehhhHHHHHHHH
Confidence 899999999887543
No 129
>PLN02270 phospholipase D alpha
Probab=98.66 E-value=1.4e-07 Score=94.91 Aligned_cols=103 Identities=18% Similarity=0.268 Sum_probs=84.9
Q ss_pred eeeEEEEEEEeeecCCCCC-----------------C--CCCCcEEEEEECCe-EeeeeeecC-CCCCcccceeEEEecC
Q 021294 204 FVGLIKVNVVKGTNLAVRD-----------------V--MTSDPYVILALGHQ-TVKTRVIKS-NLNPVWNESLMLSIPE 262 (314)
Q Consensus 204 ~~g~L~V~v~~a~~L~~~d-----------------~--~~~dPyv~v~l~~~-~~kT~~~~~-tlnP~w~e~~~f~v~~ 262 (314)
.-|.|.|+|.+|++|+..+ . ..+||||.|.+++. ..+|+++.+ ..||.|+|.|++.+..
T Consensus 6 lhg~l~~~i~ea~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~tv~~~~a~v~rtr~~~~~~~~p~w~e~f~i~~ah 85 (808)
T PLN02270 6 LHGTLHATIYEVDKLHSGGGPGFLGKLVANVEETVGVGKGESQLYATIDLEKARVGRTRKIENEPKNPRWYESFHIYCAH 85 (808)
T ss_pred eecceEEEEEEcccCCCcchhhHHHHHHhccchhccCCCCCCCceEEEEeCCcEEEEEeecCCCCCCCccccceEEeecc
Confidence 4478999999999998531 1 15699999999775 569999987 4699999999999977
Q ss_pred CCCcEEEEEEEcCCCCCCceeEEEEEeCccccccccccCcccccC
Q 021294 263 NIPPLKVLVYDKDTFTTDDFMGDAEIDIQPLVTAARACETPISMS 307 (314)
Q Consensus 263 ~~~~L~i~v~d~d~~~~dd~iG~~~v~l~~l~~~~~~~~~~~~~~ 307 (314)
....+.|.|.|.+.++. .+||.+.+++.+|+.+.....|..+++
T Consensus 86 ~~~~v~f~vkd~~~~g~-~~ig~~~~p~~~~~~g~~i~~~~~~~~ 129 (808)
T PLN02270 86 MASNIIFTVKDDNPIGA-TLIGRAYIPVEEILDGEEVDRWVEILD 129 (808)
T ss_pred CcceEEEEEecCCccCc-eEEEEEEEEHHHhcCCCccccEEeccC
Confidence 77899999999998876 499999999999998877665655544
No 130
>PLN02964 phosphatidylserine decarboxylase
Probab=98.19 E-value=2.7e-06 Score=84.78 Aligned_cols=90 Identities=22% Similarity=0.431 Sum_probs=75.8
Q ss_pred ceeeeeEEEEEEEeeecCCCCCCCCCCc-EEEEEECCeEeeeeeecCCCCCcccceeEEEecC-CCCcEEEEEEEcCCCC
Q 021294 201 MVEFVGLIKVNVVKGTNLAVRDVMTSDP-YVILALGHQTVKTRVIKSNLNPVWNESLMLSIPE-NIPPLKVLVYDKDTFT 278 (314)
Q Consensus 201 ~~e~~g~L~V~v~~a~~L~~~d~~~~dP-yv~v~l~~~~~kT~~~~~tlnP~w~e~~~f~v~~-~~~~L~i~v~d~d~~~ 278 (314)
...+.|++.+++++|. +++ .|+ |+.+++|.++++|.+.++|+||+||+...|.+.+ +....+|.|||++.++
T Consensus 49 ~~~~~~~~~~~~~~~~----~~~--~~~~~~~~~~g~~~f~t~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 122 (644)
T PLN02964 49 AEDFSGIALLTLVGAE----MKF--KDKWLACVSFGEQTFRTETSDSTDKPVWNSEKKLLLEKNGPHLARISVFETNRLS 122 (644)
T ss_pred cccccCeEEEEeehhh----hcc--CCcEEEEEEecceeeeeccccccCCcccchhhceEeccCCcceEEEEEEecCCCC
Confidence 3468899999999986 332 477 4667889999999999999999999999999866 4455799999999999
Q ss_pred CCceeEEEEEeCcccccc
Q 021294 279 TDDFMGDAEIDIQPLVTA 296 (314)
Q Consensus 279 ~dd~iG~~~v~l~~l~~~ 296 (314)
.++++|.++++|.++...
T Consensus 123 ~n~lv~~~e~~~t~f~~k 140 (644)
T PLN02964 123 KNTLVGYCELDLFDFVTQ 140 (644)
T ss_pred HHHhhhheeecHhhccHH
Confidence 999999999998877643
No 131
>KOG1326 consensus Membrane-associated protein FER-1 and related ferlins, contain multiple C2 domains [Cell wall/membrane/envelope biogenesis]
Probab=98.13 E-value=1.9e-06 Score=87.26 Aligned_cols=88 Identities=33% Similarity=0.456 Sum_probs=77.1
Q ss_pred eeEEEEEEEeeecCCCCCCC-CCCcEEEEEECCeE--eeeeeecCCCCCcccceeEEEecC-CCCcEEEEEEEcCCCCCC
Q 021294 205 VGLIKVNVVKGTNLAVRDVM-TSDPYVILALGHQT--VKTRVIKSNLNPVWNESLMLSIPE-NIPPLKVLVYDKDTFTTD 280 (314)
Q Consensus 205 ~g~L~V~v~~a~~L~~~d~~-~~dPyv~v~l~~~~--~kT~~~~~tlnP~w~e~~~f~v~~-~~~~L~i~v~d~d~~~~d 280 (314)
...+.|++++|.+|...|.. ..|||+.+.+|++. -++..+.+++||+|.+.|.+...- ....|+++|||+|..+.|
T Consensus 612 ~~LvrVyvv~A~~L~p~D~ng~adpYv~l~lGk~~~~d~~~yip~tlnPVfgkmfel~~~lp~ek~l~v~vyd~D~~~~d 691 (1105)
T KOG1326|consen 612 KCLVRVYVVEAFSLQPSDGNGDADPYVKLLLGKKRTLDRAHYIPNTLNPVFGKMFELECLLPFEKDLIVEVYDHDLEAQD 691 (1105)
T ss_pred eeeEEEEEEEeeeccccCCCCCcCceeeeeeccchhhhhhhcCcCCCCcHHHHHHHhhcccchhhcceeEEEEeeccccc
Confidence 35677999999999998877 89999999999877 467788999999999999887643 456799999999999999
Q ss_pred ceeEEEEEeCcc
Q 021294 281 DFMGDAEIDIQP 292 (314)
Q Consensus 281 d~iG~~~v~l~~ 292 (314)
+.||++.++|+.
T Consensus 692 ~~iget~iDLEn 703 (1105)
T KOG1326|consen 692 EKIGETTIDLEN 703 (1105)
T ss_pred chhhceehhhhh
Confidence 999999999975
No 132
>KOG2059 consensus Ras GTPase-activating protein [Signal transduction mechanisms]
Probab=97.97 E-value=7.8e-06 Score=80.20 Aligned_cols=92 Identities=17% Similarity=0.269 Sum_probs=68.2
Q ss_pred EeeecCCCCCCCCCCcEEEEEECCe----EeeeeeecCCCCCcccceeEEEecCC----------------CCcEEEEEE
Q 021294 213 VKGTNLAVRDVMTSDPYVILALGHQ----TVKTRVIKSNLNPVWNESLMLSIPEN----------------IPPLKVLVY 272 (314)
Q Consensus 213 ~~a~~L~~~d~~~~dPyv~v~l~~~----~~kT~~~~~tlnP~w~e~~~f~v~~~----------------~~~L~i~v~ 272 (314)
+.++++.+.....+|||+.+..... ..+|++.+.+.+|.|+|.|.|.+... ...|++.+|
T Consensus 138 L~~r~~~P~~~~~~dp~~~v~~~g~~~~~~~~T~~~kkt~~p~~~Ev~~f~~~~~~~~s~ks~~~~~~e~~~l~irv~lW 217 (800)
T KOG2059|consen 138 LKTRQGLPIINGQCDPFARVTLCGPSKLKEKKTKVKKKTTNPQFDEVFYFEVTREESYSKKSLFMPEEEDDMLEIRVDLW 217 (800)
T ss_pred hhhcccCceeCCCCCcceEEeecccchhhccccceeeeccCcchhhheeeeeccccccccchhcCcccCCceeeEEEeec
Confidence 3344444444447899999998553 35999999999999999999987543 235889999
Q ss_pred E-cCCCCCCceeEEEEEeCccccccccccCccc
Q 021294 273 D-KDTFTTDDFMGDAEIDIQPLVTAARACETPI 304 (314)
Q Consensus 273 d-~d~~~~dd~iG~~~v~l~~l~~~~~~~~~~~ 304 (314)
+ ++....++|+|++.+++..+........|..
T Consensus 218 ~~~~~~~~~~FlGevrv~v~~~~~~s~p~~W~~ 250 (800)
T KOG2059|consen 218 NDLNLVINDVFLGEVRVPVDVLRQKSSPAAWYY 250 (800)
T ss_pred cchhhhhhhhhceeEEeehhhhhhccCccceEE
Confidence 8 5666679999999999998875444444433
No 133
>KOG0905 consensus Phosphoinositide 3-kinase [Signal transduction mechanisms]
Probab=97.78 E-value=2.1e-05 Score=80.92 Aligned_cols=94 Identities=24% Similarity=0.320 Sum_probs=77.8
Q ss_pred eeEEEEEEEeeecCCCCCCC-CCCcEEEEEEC-----CeEeeeeeecCCCCCcccceeEEEecC----CCCcEEEEEEEc
Q 021294 205 VGLIKVNVVKGTNLAVRDVM-TSDPYVILALG-----HQTVKTRVIKSNLNPVWNESLMLSIPE----NIPPLKVLVYDK 274 (314)
Q Consensus 205 ~g~L~V~v~~a~~L~~~d~~-~~dPyv~v~l~-----~~~~kT~~~~~tlnP~w~e~~~f~v~~----~~~~L~i~v~d~ 274 (314)
.|.|+|.|.-+++|+...-+ ..||||+.++- ..+.+|++++++.||.|||.+...-.+ ....|++.||..
T Consensus 1523 ~~~LtImV~H~K~L~~Lqdg~~P~pyVK~YLlPdp~k~sKRKTKvvrkt~~PTfnE~LvY~g~p~~~l~qReLQ~sVls~ 1602 (1639)
T KOG0905|consen 1523 NGTLTIMVMHAKGLALLQDGQDPDPYVKTYLLPDPRKTSKRKTKVVRKTRNPTFNEMLVYDGFPKEILQQRELQVSVLSN 1602 (1639)
T ss_pred CceEEEEhhhhcccccccCCCCCCcceeEEecCCchHhhhhhhccccccCCCchhhheeecCCchhhhhhheeeeeeecc
Confidence 37999999999999655444 88999999993 245799999999999999999877322 347899999999
Q ss_pred CCCCCCceeEEEEEeCcccccccc
Q 021294 275 DTFTTDDFMGDAEIDIQPLVTAAR 298 (314)
Q Consensus 275 d~~~~dd~iG~~~v~l~~l~~~~~ 298 (314)
+.+..+.++|.+.++|.++-...+
T Consensus 1603 ~~~~en~~lg~v~i~L~~~~l~kE 1626 (1639)
T KOG0905|consen 1603 GGLLENVFLGGVNIPLLKVDLLKE 1626 (1639)
T ss_pred cceeeeeeeeeeecchhhcchhhh
Confidence 999999999999999998765443
No 134
>PLN02352 phospholipase D epsilon
Probab=97.69 E-value=0.00015 Score=73.30 Aligned_cols=95 Identities=17% Similarity=0.338 Sum_probs=69.8
Q ss_pred eeeEEEEEEEeeecCCCC----CC-C-CCCcEEEEEECCeE-eeeeeecCCCCCcccceeEEEecCCC-CcEEEEEEEcC
Q 021294 204 FVGLIKVNVVKGTNLAVR----DV-M-TSDPYVILALGHQT-VKTRVIKSNLNPVWNESLMLSIPENI-PPLKVLVYDKD 275 (314)
Q Consensus 204 ~~g~L~V~v~~a~~L~~~----d~-~-~~dPyv~v~l~~~~-~kT~~~~~tlnP~w~e~~~f~v~~~~-~~L~i~v~d~d 275 (314)
.-|.|.++|.+|+-+... .. . ..+|||.|.+++.+ .+| .+..||.|+|.|++.+.... ..+.|.|.|
T Consensus 8 lhg~l~~~i~~~~~~~~~~~~~~~~~~~~~~y~tv~~~~~~v~rt---~~~~~p~w~e~f~i~~ah~~~~~~~f~vk~-- 82 (758)
T PLN02352 8 FHGTLEATIFDATPYTPPFPFNCIFLNGKATYVTIKIGNKKVAKT---SHEYDRVWNQTFQILCAHPLDSTITITLKT-- 82 (758)
T ss_pred cccceEEEEEEeeehhhcccccccccCCCCceEEEEeCCcEEecC---CCCCCCccccceeEEeeeecCCcEEEEEec--
Confidence 347899999999732111 11 1 23999999997654 577 55569999999999986655 579999988
Q ss_pred CCCCCceeEEEEEeCcccccccc-ccCccccc
Q 021294 276 TFTTDDFMGDAEIDIQPLVTAAR-ACETPISM 306 (314)
Q Consensus 276 ~~~~dd~iG~~~v~l~~l~~~~~-~~~~~~~~ 306 (314)
...+||.+.+++.+|+.+.. ...|..++
T Consensus 83 ---~~~~ig~~~~p~~~~~~g~~~~~~~~~~~ 111 (758)
T PLN02352 83 ---KCSILGRFHIQAHQIVTEASFINGFFPLI 111 (758)
T ss_pred ---CCeEEEEEEEEHHHhhCCCcccceEEEcc
Confidence 25789999999999998866 44444443
No 135
>KOG1013 consensus Synaptic vesicle protein rabphilin-3A [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.65 E-value=7.3e-05 Score=67.64 Aligned_cols=88 Identities=26% Similarity=0.302 Sum_probs=72.2
Q ss_pred eeeEEEEEEEeeecCCCCCCC-CCCcEEEEEECC-----eEeeeeeecCCCCCcccceeEEEecCC---CCcEEEEEEEc
Q 021294 204 FVGLIKVNVVKGTNLAVRDVM-TSDPYVILALGH-----QTVKTRVIKSNLNPVWNESLMLSIPEN---IPPLKVLVYDK 274 (314)
Q Consensus 204 ~~g~L~V~v~~a~~L~~~d~~-~~dPyv~v~l~~-----~~~kT~~~~~tlnP~w~e~~~f~v~~~---~~~L~i~v~d~ 274 (314)
...-+.|+++++..|...|.. .+||||.+.+.. -+.+|.+.+.+++|+|++.|.|.+.+. ...+.|.|||.
T Consensus 231 ~~~~l~vt~iRc~~l~ssDsng~sDpyvS~~l~pdv~~~fkkKt~~~K~t~~p~fd~~~~~~i~pgdLa~~kv~lsvgd~ 310 (362)
T KOG1013|consen 231 TTPGLIVTIIRCSHLASSDSNGYSDPYVSQRLSPDVGKKFKKKTQQKKKTLNPEFDEEFFYDIGPGDLAYKKVALSVGDY 310 (362)
T ss_pred CCCceEEEEEEeeeeeccccCCCCCccceeecCCCcchhhcccCcchhccCCccccccccccCCccchhcceEEEeeccc
Confidence 335688899999999888887 899999999842 356899999999999999999998663 35688999999
Q ss_pred CCCCCCceeEEEEEeCc
Q 021294 275 DTFTTDDFMGDAEIDIQ 291 (314)
Q Consensus 275 d~~~~dd~iG~~~v~l~ 291 (314)
+.....+++|-....+-
T Consensus 311 ~~G~s~d~~GG~~~g~~ 327 (362)
T KOG1013|consen 311 DIGKSNDSIGGSMLGGY 327 (362)
T ss_pred CCCcCccCCCccccccc
Confidence 98878899988665544
No 136
>KOG1328 consensus Synaptic vesicle protein BAIAP3, involved in vesicle priming/regulation [Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms]
Probab=97.62 E-value=1.2e-05 Score=79.02 Aligned_cols=90 Identities=26% Similarity=0.527 Sum_probs=69.6
Q ss_pred EEEEEEeeecCCCCCCC-CCCcEEEEEECC-------------e------------------EeeeeeecCCCCCcccce
Q 021294 208 IKVNVVKGTNLAVRDVM-TSDPYVILALGH-------------Q------------------TVKTRVIKSNLNPVWNES 255 (314)
Q Consensus 208 L~V~v~~a~~L~~~d~~-~~dPyv~v~l~~-------------~------------------~~kT~~~~~tlnP~w~e~ 255 (314)
+.|.+.+|.+|..++.. .+|||+...+-. | ..-|.+.++|+||.|+|.
T Consensus 116 l~is~~~ak~l~akd~ngfSdP~~m~g~~p~~~~~~~pra~~eqrdgl~~~~~~~GpiPAKlIkatsvk~~TLnPkW~Ek 195 (1103)
T KOG1328|consen 116 LNISLLEAKDLIAKDVNGFSDPFAMMGVVPGTRKENSPRALHEQRDGLMHRFQDTGPIPAKLIKATSVKKKTLNPKWSEK 195 (1103)
T ss_pred HHHHHHHhcCccccCCCCCCChhhhhccccccccccChhhhhhhhhhhhhccccCCCCcHHHhhhcccccccCCcchhhh
Confidence 45556677888887776 789998876510 0 124788899999999999
Q ss_pred eEEEecC-CCCcEEEEEEEcCCC---------------------------------CC---CceeEEEEEeCccccccc
Q 021294 256 LMLSIPE-NIPPLKVLVYDKDTF---------------------------------TT---DDFMGDAEIDIQPLVTAA 297 (314)
Q Consensus 256 ~~f~v~~-~~~~L~i~v~d~d~~---------------------------------~~---dd~iG~~~v~l~~l~~~~ 297 (314)
|.|.+.+ ..+.+.+-+||+|.- +. |||+|.+.++|.++...+
T Consensus 196 F~F~IeDv~tDqfHlDIWDHDDe~sv~dAvs~LNeV~G~kG~GRyFKqv~qSARans~d~tDDFLGciNipl~EiP~~G 274 (1103)
T KOG1328|consen 196 FQFTIEDVQTDQFHLDIWDHDDEESVLDAVSSLNEVTGFKGIGRYFKQVTQSARANSDDCTDDFLGCINIPLAEIPPDG 274 (1103)
T ss_pred eeeehhccccceeeeecccCCccHHHHHHHHHHhhhhcchhHHHHHHHHHHHHhcCCCccccccccccccchhcCCcch
Confidence 9999977 677899999998741 23 789999999999997543
No 137
>KOG1011 consensus Neurotransmitter release regulator, UNC-13 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.45 E-value=0.0004 Score=67.87 Aligned_cols=93 Identities=18% Similarity=0.240 Sum_probs=75.6
Q ss_pred eEEEEEEEeeecCCCCCCCCCCcEEEEEEC-------CeEeeeeeecCCCCCcccceeEEEecCC----CCcEEEEEEEc
Q 021294 206 GLIKVNVVKGTNLAVRDVMTSDPYVILALG-------HQTVKTRVIKSNLNPVWNESLMLSIPEN----IPPLKVLVYDK 274 (314)
Q Consensus 206 g~L~V~v~~a~~L~~~d~~~~dPyv~v~l~-------~~~~kT~~~~~tlnP~w~e~~~f~v~~~----~~~L~i~v~d~ 274 (314)
..++|.|+.|.+|.....+...|||.|.+- +.++.|+...++-.|.|||+|+|-+.++ ...|.|.|.|+
T Consensus 1125 hkvtvkvvaandlkwqtsgmFrPFVEV~ivGP~lsDKKRK~~TKtKsnnWaPKyNEtF~f~Lg~e~~Pe~YEL~~~VKDY 1204 (1283)
T KOG1011|consen 1125 HKVTVKVVAANDLKWQTSGMFRPFVEVHIVGPHLSDKKRKFSTKTKSNNWAPKYNETFHFFLGNEGGPEHYELQFCVKDY 1204 (1283)
T ss_pred ceEEEEEEecccccchhccccccceEEEEecCcccchhhhccccccCCCcCcccCceeEEEeccCCCCceEEEEEeehhh
Confidence 367888999999987666677899999882 2456788888999999999999988552 34588999898
Q ss_pred CCCCCCceeEEEEEeCcccccccc
Q 021294 275 DTFTTDDFMGDAEIDIQPLVTAAR 298 (314)
Q Consensus 275 d~~~~dd~iG~~~v~l~~l~~~~~ 298 (314)
.-...|..+|.+.+.|.++...+.
T Consensus 1205 CFAReDRvvGl~VlqL~~va~kGS 1228 (1283)
T KOG1011|consen 1205 CFAREDRVVGLAVLQLRSVADKGS 1228 (1283)
T ss_pred eeecccceeeeeeeehhhHhhcCc
Confidence 877778899999999999976544
No 138
>cd08683 C2_C2cd3 C2 domain found in C2 calcium-dependent domain containing 3 (C2cd3) proteins. C2cd3 is a novel C2 domain-containing protein specific to vertebrates. C2cd3 functions in regulator of cilia formation, Hedgehog signaling, and mouse embryonic development. Mutations in C2cd3 mice resulted in lethality in some cases and exencephaly, a twisted body axis, and pericardial edema in others. The presence of calcium-dependent lipid-binding domains in C2cd3 suggests a potential role in vesicular transport. C2cd3 is also an interesting candidate for ciliopathy because of its orthology to certain cilia-related genetic disease loci on chromosome. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances inc
Probab=97.39 E-value=0.00071 Score=53.50 Aligned_cols=79 Identities=16% Similarity=0.308 Sum_probs=60.0
Q ss_pred CCCcEEEEEE----CCeEeeeeeecCCCCCcccceeEEEec-----C-----------CCCcEEEEEEEcCCC-------
Q 021294 225 TSDPYVILAL----GHQTVKTRVIKSNLNPVWNESLMLSIP-----E-----------NIPPLKVLVYDKDTF------- 277 (314)
Q Consensus 225 ~~dPyv~v~l----~~~~~kT~~~~~tlnP~w~e~~~f~v~-----~-----------~~~~L~i~v~d~d~~------- 277 (314)
..++||++.+ ++...+|+++-++..|.|+..+.|.++ + +...+.|+||....-
T Consensus 32 GVN~yv~i~lSFl~~~e~r~TrtVArSFcPeF~Hh~Efpc~lv~~~~~Ge~~sLAElLe~~eiil~vwHr~~~s~~~~~~ 111 (143)
T cd08683 32 GVNSYVTIHLSFLPEKELRRTRTVARSFCPEFNHHVEFPCNLVVQRNSGEAISLAELLESAEIILEVWHRNPKSAGDTIK 111 (143)
T ss_pred ccceEEEEEeccCCCCceeeccchhhhcCCCccceEEEecccEEEcCCCccccHHHHhhcceEEeeeeecCCccccceec
Confidence 3589999986 456788999999999999999999765 1 124688999986532
Q ss_pred ---CCCceeEEEEEeCccccccccccCcc
Q 021294 278 ---TTDDFMGDAEIDIQPLVTAARACETP 303 (314)
Q Consensus 278 ---~~dd~iG~~~v~l~~l~~~~~~~~~~ 303 (314)
..|-+||.+.+|+.+|+........|
T Consensus 112 ~~~~~DilLG~v~IPl~~Ll~~rsGitGW 140 (143)
T cd08683 112 IETSGDILLGTVKIPLRDLLTKRSGITGW 140 (143)
T ss_pred cCcCCcEEEEEEEeeHHHHhhcccCcccc
Confidence 34558999999999998665544444
No 139
>KOG2060 consensus Rab3 effector RIM1 and related proteins, contain PDZ and C2 domains [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.37 E-value=9.3e-05 Score=68.04 Aligned_cols=108 Identities=20% Similarity=0.288 Sum_probs=84.9
Q ss_pred cceeeeeEEEEEEEeeecCCCCCCC--CCCcEEEEEECC-----eEeeeeeecCCCCCcccceeEEEecCCCCcEEEEEE
Q 021294 200 AMVEFVGLIKVNVVKGTNLAVRDVM--TSDPYVILALGH-----QTVKTRVIKSNLNPVWNESLMLSIPENIPPLKVLVY 272 (314)
Q Consensus 200 ~~~e~~g~L~V~v~~a~~L~~~d~~--~~dPyv~v~l~~-----~~~kT~~~~~tlnP~w~e~~~f~v~~~~~~L~i~v~ 272 (314)
+.+...|.+.|.|++|++|..+.-. .++|||+|++-. .+.+|+...+++.|.+-+.+.|.-.+....|.+.||
T Consensus 263 ~~~d~~g~l~vEii~ar~l~~k~~~k~~~apyVkVYlL~~g~c~ak~ktk~A~kT~~plyqq~l~f~~sp~~k~Lq~tv~ 342 (405)
T KOG2060|consen 263 ALMDSKGDLEVEIIRARGLVVKPGSKSLPAPYVKVYLLENGFCIAKKKTKSARKTLDPLYQQQLSFDQSPPGKYLQGTVW 342 (405)
T ss_pred hhhcccCceeEEEEecccccccCCcccccCceeEEEEcCCCceecccccccccccCchhhhhhhhhccCCCccEEEEEEe
Confidence 3455678999999999999765433 789999999932 346899999999999999999988888889999999
Q ss_pred E-cCCCCCCceeEEEEEeCccccccc-cccCcccccC
Q 021294 273 D-KDTFTTDDFMGDAEIDIQPLVTAA-RACETPISMS 307 (314)
Q Consensus 273 d-~d~~~~dd~iG~~~v~l~~l~~~~-~~~~~~~~~~ 307 (314)
. +..+..+.|+|.+.+-+.+|-... ....|...++
T Consensus 343 gdygRmd~k~fmg~aqi~l~eL~ls~~~~igwyKlfg 379 (405)
T KOG2060|consen 343 GDYGRMDHKSFMGVAQIMLDELNLSSSPVIGWYKLFG 379 (405)
T ss_pred ccccccchHHHhhHHHHHhhhhccccccceeeeeccC
Confidence 4 677778889999999888886555 3444444443
No 140
>KOG1326 consensus Membrane-associated protein FER-1 and related ferlins, contain multiple C2 domains [Cell wall/membrane/envelope biogenesis]
Probab=97.31 E-value=5.3e-05 Score=77.02 Aligned_cols=89 Identities=24% Similarity=0.377 Sum_probs=73.5
Q ss_pred eEEEEEEEeeecCCCCCCC-CCCcEEEEEECCeEeeeeeecCCCCCcccceeEEEe---c-------CCCCcEEEEEEEc
Q 021294 206 GLIKVNVVKGTNLAVRDVM-TSDPYVILALGHQTVKTRVIKSNLNPVWNESLMLSI---P-------ENIPPLKVLVYDK 274 (314)
Q Consensus 206 g~L~V~v~~a~~L~~~d~~-~~dPyv~v~l~~~~~kT~~~~~tlnP~w~e~~~f~v---~-------~~~~~L~i~v~d~ 274 (314)
-.+++.|.+|+.|...+.. .+|||..+.+-++...|.++.+++||.|++...|.- . .....+.|+|||.
T Consensus 206 ~~lR~yiyQar~L~a~dk~~~sdp~a~v~f~~qs~~T~~v~~tl~ptwdq~~~f~~~ei~ge~~~~~~~ppi~v~e~yd~ 285 (1105)
T KOG1326|consen 206 SPLRSYIYQARALGAPDKDDESDPDAAVEFCGQSKETEVVPGTLNPTWDQTIIFDEVEIYGEAHLVLKNPPIRVFEVYDL 285 (1105)
T ss_pred hhhHHHHHHHHhhcCCCcccCCCchhhhhcccccceeEeecCcCCCCccceeeccceeecCccchhhcCCCeEEEEeehh
Confidence 4566777889999888776 899999999999999999999999999999999852 1 1234578999999
Q ss_pred CCCCCCceeEEEEEeCcccc
Q 021294 275 DTFTTDDFMGDAEIDIQPLV 294 (314)
Q Consensus 275 d~~~~dd~iG~~~v~l~~l~ 294 (314)
+..+.++|+|.......-+.
T Consensus 286 dr~g~~ef~gr~~~~p~V~~ 305 (1105)
T KOG1326|consen 286 DRSGINEFKGRKKQRPYVMV 305 (1105)
T ss_pred hhhchHHhhcccccceEEEe
Confidence 99999999999876655444
No 141
>KOG1327 consensus Copine [Signal transduction mechanisms]
Probab=97.13 E-value=0.0011 Score=64.14 Aligned_cols=84 Identities=26% Similarity=0.501 Sum_probs=67.9
Q ss_pred EEEeeecCCCCCCC-CCCcEEEEEEC--C----eEeeeeeecCCCCCcccceeEEEec-----CCCCcEEEEEEEcCCCC
Q 021294 211 NVVKGTNLAVRDVM-TSDPYVILALG--H----QTVKTRVIKSNLNPVWNESLMLSIP-----ENIPPLKVLVYDKDTFT 278 (314)
Q Consensus 211 ~v~~a~~L~~~d~~-~~dPyv~v~l~--~----~~~kT~~~~~tlnP~w~e~~~f~v~-----~~~~~L~i~v~d~d~~~ 278 (314)
-..++++|..+|++ .+|||..+.-. . ...+|.+.+++++|.|.+ |.+... +....+++++||++..+
T Consensus 141 ~~~~~~~ld~kd~f~ksd~~l~~~~~~~d~s~~~~~~tEv~~n~l~p~w~~-~~i~~~~l~~~~~~~~~~i~~~d~~~~~ 219 (529)
T KOG1327|consen 141 FSFRAKNLDPKDFFSKSDPYLEFYKRVDDGSTQMLYRTEVVKNTLNPQWAP-FSISLQSLCSKDGNRPIQIECYDYDSNG 219 (529)
T ss_pred eeeeeeecCcccccccCCcceEEEEecCCCceeeccccceeccCCCCcccc-cccchhhhcccCCCCceEEEEeccCCCC
Confidence 34567888888888 99999887652 2 346899999999999998 555432 24578999999999999
Q ss_pred CCceeEEEEEeCccccc
Q 021294 279 TDDFMGDAEIDIQPLVT 295 (314)
Q Consensus 279 ~dd~iG~~~v~l~~l~~ 295 (314)
++++||++..++..+..
T Consensus 220 ~~~~ig~~~tt~~~~~~ 236 (529)
T KOG1327|consen 220 KHDLIGKFQTTLSELQE 236 (529)
T ss_pred CcCceeEecccHHHhcc
Confidence 99999999999998864
No 142
>cd08684 C2A_Tac2-N C2 domain first repeat found in Tac2-N (Tandem C2 protein in Nucleus). Tac2-N contains two C2 domains and a short C-terminus including a WHXL motif, which are key in stabilizing transport vesicles to the plasma membrane by binding to a plasma membrane. However unlike the usual carboxyl-terminal-type (C-type) tandem C2 proteins, it lacks a transmembrane domain, a Slp-homology domain, and a Munc13-1-interacting domain. Homology search analysis indicate that no known protein motifs are located in its N-terminus, making Tac2-N a novel class of Ca2+-independent, C-type tandem C2 proteins. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphos
Probab=96.94 E-value=0.0019 Score=47.69 Aligned_cols=86 Identities=15% Similarity=0.227 Sum_probs=61.2
Q ss_pred EEEEEeeecCCCCCCCCCCc--EEEE--EECC-eEeeeeeecCCCCCcccceeEEEecC---CCCcEEEEEEEcCCCCCC
Q 021294 209 KVNVVKGTNLAVRDVMTSDP--YVIL--ALGH-QTVKTRVIKSNLNPVWNESLMLSIPE---NIPPLKVLVYDKDTFTTD 280 (314)
Q Consensus 209 ~V~v~~a~~L~~~d~~~~dP--yv~v--~l~~-~~~kT~~~~~tlnP~w~e~~~f~v~~---~~~~L~i~v~d~d~~~~d 280 (314)
-|+++.+++|.......-+| |++- ++.+ ...+|.+.+...||+|.|+|.|.+.. ..-.|-|.|+. ...+.
T Consensus 2 witv~~c~d~s~~~~~~e~~~i~ikg~~tl~kpv~~KsS~rrgs~d~~f~ETFVFqi~l~qL~~V~L~fsv~~--~~~RK 79 (103)
T cd08684 2 WITVLKCKDLSWPSSCGENPTIYIKGILTLPKPVHFKSSAKEGSNDIEFMETFVFAIKLQNLQTVRLVFKIQT--QTPRK 79 (103)
T ss_pred EEEEEEecccccccccCcCCeeEEEEEEecCCCccccchhhcCCCChhHHHHHHHHHHHhhccceEEEEEeec--cCCcc
Confidence 36777888875433332333 5443 2333 45789999999999999999998743 34557788887 55677
Q ss_pred ceeEEEEEeCcccccc
Q 021294 281 DFMGDAEIDIQPLVTA 296 (314)
Q Consensus 281 d~iG~~~v~l~~l~~~ 296 (314)
+.||.+.+.++++-..
T Consensus 80 e~iG~~sL~l~s~gee 95 (103)
T cd08684 80 RTIGECSLSLRTLSTQ 95 (103)
T ss_pred ceeeEEEeecccCCHH
Confidence 8999999999988643
No 143
>KOG1013 consensus Synaptic vesicle protein rabphilin-3A [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.92 E-value=0.00017 Score=65.38 Aligned_cols=89 Identities=25% Similarity=0.464 Sum_probs=73.1
Q ss_pred eEEEEEEEeeecCCCCCCC-CCCcEEEEEECC-----eEeeeeeecCCCCCcccceeEEEec--C--CCCcEEEEEEEcC
Q 021294 206 GLIKVNVVKGTNLAVRDVM-TSDPYVILALGH-----QTVKTRVIKSNLNPVWNESLMLSIP--E--NIPPLKVLVYDKD 275 (314)
Q Consensus 206 g~L~V~v~~a~~L~~~d~~-~~dPyv~v~l~~-----~~~kT~~~~~tlnP~w~e~~~f~v~--~--~~~~L~i~v~d~d 275 (314)
..+.++|.+|.+|..+++. ..|||+++.+.. .+.+|++..+++||.|+|......- . ....+++.|.|.+
T Consensus 93 ~~~~~tl~~a~~lk~~~~~~~~d~~~~~~llpga~kl~slr~~t~~n~lN~~w~etev~~~i~~~~~~~K~~Rk~vcdn~ 172 (362)
T KOG1013|consen 93 RMLDTTLDRAKGLKPMDINGLADPYVKLHLLPGAGKLNSLRTKTTRNTLNPEWNETEVYEGITDDDTHLKVLRKVVCDND 172 (362)
T ss_pred hhcceeechhcccchhhhhhhcchHHhhhcccchhhhhhhhHHhhccCcCcceeccceecccccchhhhhhhheeeccCc
Confidence 4678899999999999887 899999998843 3478899999999999998776532 2 2345778899999
Q ss_pred CCCCCceeEEEEEeCcccc
Q 021294 276 TFTTDDFMGDAEIDIQPLV 294 (314)
Q Consensus 276 ~~~~dd~iG~~~v~l~~l~ 294 (314)
.+..++++|+..|.+..|.
T Consensus 173 ~~~~~~sqGq~r~~lkKl~ 191 (362)
T KOG1013|consen 173 KKTHNESQGQSRVSLKKLK 191 (362)
T ss_pred ccccccCcccchhhhhccC
Confidence 9999999999998887664
No 144
>KOG3837 consensus Uncharacterized conserved protein, contains DM14 and C2 domains [General function prediction only]
Probab=96.05 E-value=0.0043 Score=57.96 Aligned_cols=102 Identities=25% Similarity=0.380 Sum_probs=75.4
Q ss_pred EEEEEEEeeecCCCCCC-CCCCcEEEEEE-----CCeEeeeeeecCCCCCcccceeEEEecCC------------CCcEE
Q 021294 207 LIKVNVVKGTNLAVRDV-MTSDPYVILAL-----GHQTVKTRVIKSNLNPVWNESLMLSIPEN------------IPPLK 268 (314)
Q Consensus 207 ~L~V~v~~a~~L~~~d~-~~~dPyv~v~l-----~~~~~kT~~~~~tlnP~w~e~~~f~v~~~------------~~~L~ 268 (314)
.|.+.|+++.+++.-.- .-.|-||.+.+ ..++.+|.+++.+.+|.|+|.|.+.+... ..-++
T Consensus 368 elel~ivrg~~~pvp~gp~hld~fvr~efpl~nD~~qk~kt~vik~t~SPdfde~fklni~rg~~~nr~fqR~fkr~g~k 447 (523)
T KOG3837|consen 368 ELELAIVRGQKNPVPGGPMHLDQFVRLEFPLENDSRQKLKTDVIKVTPSPDFDEDFKLNIRRGPGLNREFQRRFKRLGKK 447 (523)
T ss_pred HhHHHHhhcccCCCCCCchhHHhhhcccccccccccccCccceeeCCCCCCcccceeeeccCCCcccHHHHHHHHhcCee
Confidence 45566777777765331 14567887776 24678999999999999999999988541 23599
Q ss_pred EEEEEcCCC-CCCceeEEEEEeCccccccccccCcccccCC
Q 021294 269 VLVYDKDTF-TTDDFMGDAEIDIQPLVTAARACETPISMSP 308 (314)
Q Consensus 269 i~v~d~d~~-~~dd~iG~~~v~l~~l~~~~~~~~~~~~~~~ 308 (314)
|++|.+..+ .+|.++|.+.+.|..|-...+..+...++.+
T Consensus 448 feifhkggf~rSdkl~gt~nikle~Len~cei~e~~~l~DG 488 (523)
T KOG3837|consen 448 FEIFHKGGFNRSDKLTGTGNIKLEILENMCEICEYLPLKDG 488 (523)
T ss_pred EEEeeccccccccceeceeeeeehhhhcccchhhceecccc
Confidence 999998764 5678999999999988777666665555444
No 145
>KOG1265 consensus Phospholipase C [Lipid transport and metabolism]
Probab=95.93 E-value=0.015 Score=59.12 Aligned_cols=90 Identities=24% Similarity=0.546 Sum_probs=69.0
Q ss_pred eeeEEEEEEEeeecCCCCCCCCCCcEEEEEE-C------CeEeeeeeecC-CCCCcccce-eEEE--ecCCCCcEEEEEE
Q 021294 204 FVGLIKVNVVKGTNLAVRDVMTSDPYVILAL-G------HQTVKTRVIKS-NLNPVWNES-LMLS--IPENIPPLKVLVY 272 (314)
Q Consensus 204 ~~g~L~V~v~~a~~L~~~d~~~~dPyv~v~l-~------~~~~kT~~~~~-tlnP~w~e~-~~f~--v~~~~~~L~i~v~ 272 (314)
.++.+.|+|+++.-|-.+.. ..||.|.+ | ...++|++... ++||+|+|. |.|. +-+....|+|.||
T Consensus 701 IA~t~sV~VISgqFLSdrkv---gtyVEVdmfgLP~Dt~Rk~~rtrt~~~n~~npvy~eepfvF~KVvLpeLA~lRiavy 777 (1189)
T KOG1265|consen 701 IAATLSVTVISGQFLSDRKV---GTYVEVDMFGLPTDTIRKEFRTRTVQGNSFNPVYEEEPFVFRKVVLPELASLRIAVY 777 (1189)
T ss_pred EEeeEEEEEEeeeecccccc---CceEEEEecCCCchhhhhhhhhccccCCCCCcccccCCcccceecccchhheeeeee
Confidence 45788999999987765543 58999987 2 24568888775 699999954 6775 3445678999999
Q ss_pred EcCCCCCCceeEEEEEeCcccccccccc
Q 021294 273 DKDTFTTDDFMGDAEIDIQPLVTAARAC 300 (314)
Q Consensus 273 d~d~~~~dd~iG~~~v~l~~l~~~~~~~ 300 (314)
+... .+||+--+++..|..|+.+.
T Consensus 778 eEgg----K~ig~RIlpvd~l~~GYrhv 801 (1189)
T KOG1265|consen 778 EEGG----KFIGQRILPVDGLNAGYRHV 801 (1189)
T ss_pred ccCC----ceeeeeccchhcccCcceeE
Confidence 9653 69999999999998887654
No 146
>cd08693 C2_PI3K_class_I_beta_delta C2 domain present in class I beta and delta phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, beta and delta isoforms of PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Ty
Probab=94.75 E-value=0.28 Score=41.34 Aligned_cols=86 Identities=23% Similarity=0.292 Sum_probs=58.6
Q ss_pred eEEEEEEEeeecCCCCCCCCCCcEEEEEE--CCeE----eeeeeecCCCCCcccceeEEEecC----CCCcEEEEEEEcC
Q 021294 206 GLIKVNVVKGTNLAVRDVMTSDPYVILAL--GHQT----VKTRVIKSNLNPVWNESLMLSIPE----NIPPLKVLVYDKD 275 (314)
Q Consensus 206 g~L~V~v~~a~~L~~~d~~~~dPyv~v~l--~~~~----~kT~~~~~tlnP~w~e~~~f~v~~----~~~~L~i~v~d~d 275 (314)
..+.|+|..+.++... ....+-||.+.+ |.+. ..|+...-...+.|+|.+.|++.- ....|.|.||+..
T Consensus 8 ~~f~i~i~~~~~~~~~-~~~~~l~V~~~lyhG~~~L~~p~~T~~~~~~~~~~Wnewl~F~I~i~dLPr~ArLciti~~~~ 86 (173)
T cd08693 8 EKFSITLHKISNLNAA-ERTMKVGVQAGLFHGGESLCKTVKTSEVSGKNDPVWNETLEFDINVCDLPRMARLCFAIYEVS 86 (173)
T ss_pred CCEEEEEEEeccCccC-CCCceEEEEEEEEECCEEccCceEccccCCCCccccceeEEcccchhcCChhHeEEEEEEEec
Confidence 3678888888888751 124566777655 5543 355555445679999999998642 3467999999864
Q ss_pred CCC----------------CCceeEEEEEeCcc
Q 021294 276 TFT----------------TDDFMGDAEIDIQP 292 (314)
Q Consensus 276 ~~~----------------~dd~iG~~~v~l~~ 292 (314)
... .+..||.+.++|-+
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~ig~~n~~LFd 119 (173)
T cd08693 87 KKAKGKRSRKNQTKKKKKKDDNPIAWVNTMVFD 119 (173)
T ss_pred ccccccccccccccccccCcceEEEEEeEEEEc
Confidence 321 24689999999875
No 147
>cd08398 C2_PI3K_class_I_alpha C2 domain present in class I alpha phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, alpha isoform PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a c
Probab=94.70 E-value=0.33 Score=40.30 Aligned_cols=84 Identities=19% Similarity=0.254 Sum_probs=58.3
Q ss_pred eEEEEEEEeeecCCCCCCCCCCcEEEEEE--CCeEe----eeeeecCCCCCcccceeEEEecC----CCCcEEEEEEEcC
Q 021294 206 GLIKVNVVKGTNLAVRDVMTSDPYVILAL--GHQTV----KTRVIKSNLNPVWNESLMLSIPE----NIPPLKVLVYDKD 275 (314)
Q Consensus 206 g~L~V~v~~a~~L~~~d~~~~dPyv~v~l--~~~~~----kT~~~~~tlnP~w~e~~~f~v~~----~~~~L~i~v~d~d 275 (314)
..+.|+|+.+.++...+ .++-||.+.+ |.+.. .|+.+.. .++.|||.+.|++.- ....|.|+||+..
T Consensus 8 ~~~~v~i~~~~~~~~~~--~~~l~V~v~l~~g~~~L~~pv~T~~v~~-~~~~WnEwL~fpI~i~dLPr~ArL~iti~~~~ 84 (158)
T cd08398 8 SNLRIKILCATYVNVND--IDKIYVRTGIYHGGEPLCDNVNTQRVPC-SNPRWNEWLDYDIYIPDLPRSARLCLSICSVK 84 (158)
T ss_pred CCeEEEEEeeccCCCCC--cCeEEEEEEEEECCEEccCeeEecccCC-CCCccceeEEcccchhcCChhheEEEEEEEEe
Confidence 46789999998887643 4678888766 44432 3443333 579999999998742 3467999999965
Q ss_pred CCC----CCceeEEEEEeCcc
Q 021294 276 TFT----TDDFMGDAEIDIQP 292 (314)
Q Consensus 276 ~~~----~dd~iG~~~v~l~~ 292 (314)
... ....+|.+.++|-+
T Consensus 85 ~~~~~k~~~~~iG~~ni~LFd 105 (158)
T cd08398 85 GRKGAKEEHCPLAWGNINLFD 105 (158)
T ss_pred cccCCCCceEEEEEEEEEEEC
Confidence 421 22469999999875
No 148
>cd08380 C2_PI3K_like C2 domain present in phosphatidylinositol 3-kinases (PI3Ks). C2 domain present in all classes of PI3Ks. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. In addition some PI3Ks contain a Ras-binding domain and/or a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular perm
Probab=94.65 E-value=0.29 Score=40.33 Aligned_cols=86 Identities=19% Similarity=0.229 Sum_probs=55.5
Q ss_pred EEEEEEEeeecCCCCCCCCCCcEEEEEE--CCeE----eeeeeecCCCCCcccceeEEEecC----CCCcEEEEEEEcCC
Q 021294 207 LIKVNVVKGTNLAVRDVMTSDPYVILAL--GHQT----VKTRVIKSNLNPVWNESLMLSIPE----NIPPLKVLVYDKDT 276 (314)
Q Consensus 207 ~L~V~v~~a~~L~~~d~~~~dPyv~v~l--~~~~----~kT~~~~~tlnP~w~e~~~f~v~~----~~~~L~i~v~d~d~ 276 (314)
.+.|++....++...+....+-||.+.+ |.+. ..|.......++.|||.+.|++.- ....|.|.||+.+.
T Consensus 9 ~~~i~i~~~~~~~~~~~~~~~l~V~~~l~~g~~~l~~~~~t~~~~~~~~~~Wne~l~F~i~~~~LP~~arL~itl~~~~~ 88 (156)
T cd08380 9 NLRIKIHGITNINLLDSEDLKLYVRVQLYHGGEPLCPPQSTKKVPFSTSVTWNEWLTFDILISDLPREARLCLSIYAVSE 88 (156)
T ss_pred CeEEEEEeeccccccCCCceeEEEEEEEEECCEEccCceeccCCcCCCCCcccceeEccchhhcCChhheEEEEEEEEec
Confidence 4556666666655422224566777655 4432 233333333679999999998632 34679999999765
Q ss_pred CC--CCceeEEEEEeCcc
Q 021294 277 FT--TDDFMGDAEIDIQP 292 (314)
Q Consensus 277 ~~--~dd~iG~~~v~l~~ 292 (314)
.+ .+..||.+.++|-+
T Consensus 89 ~~~~~~~~iG~~~~~lFd 106 (156)
T cd08380 89 PGSKKEVPLGWVNVPLFD 106 (156)
T ss_pred CCCCcceEEEEEeEEeEc
Confidence 44 46789999999875
No 149
>KOG0521 consensus Putative GTPase activating proteins (GAPs) [Signal transduction mechanisms]
Probab=94.39 E-value=0.005 Score=63.38 Aligned_cols=75 Identities=20% Similarity=0.231 Sum_probs=58.3
Q ss_pred CCCCCCCcCCCC-CCCCeEEecccceechhhHHHHhhcCCceeEEEEeccCCCCHHHHHHHHHhcchhHHHHHHhhhC
Q 021294 26 QPGNRHCADCGS-PDPKWVSLSTGVFICIKCSGIHRSLGVHISKVLSVKLDEWTNEQVDALAEMGGNIAVNKKYEAYT 102 (314)
Q Consensus 26 ~~~N~~C~dC~~-~~p~w~s~~~g~~~C~~C~~~Hr~lg~~~s~v~s~~~d~w~~~~v~~~~~~gGN~~~n~~~e~~~ 102 (314)
...+..|++|++ +.-.|+++++.+..|+.|+++|+..+.|++...++.+++..+ |...-..|++..-..+.++..
T Consensus 627 ~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~s~lh~a~~~~~~~~~e~ll~~ga~--vn~~d~~g~~plh~~~~~g~~ 702 (785)
T KOG0521|consen 627 ASSDGECLPRIATALAHGCCENWPVVLCIGCSLLHVAVGTGDSGAVELLLQNGAD--VNALDSKGRTPLHHATASGHT 702 (785)
T ss_pred hccCccchhhhhhhhcchhhhccchhhhcccchhhhhhccchHHHHHHHHhcCCc--chhhhccCCCcchhhhhhccc
Confidence 345889999997 567899999999999999999999999999999988888777 444445544444444554444
No 150
>cd08397 C2_PI3K_class_III C2 domain present in class III phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. These are the only domains identified in the class III PI3Ks present in this cd. In addition some PI3Ks contain a Ras-binding domain and/or a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Ty
Probab=94.04 E-value=0.26 Score=40.94 Aligned_cols=68 Identities=21% Similarity=0.233 Sum_probs=46.7
Q ss_pred CCcEEEEEE--CCeE----eeeeeecCCCCCcccceeEEEecC----CCCcEEEEEEEcCCCCCCceeEEEEEeCccc
Q 021294 226 SDPYVILAL--GHQT----VKTRVIKSNLNPVWNESLMLSIPE----NIPPLKVLVYDKDTFTTDDFMGDAEIDIQPL 293 (314)
Q Consensus 226 ~dPyv~v~l--~~~~----~kT~~~~~tlnP~w~e~~~f~v~~----~~~~L~i~v~d~d~~~~dd~iG~~~v~l~~l 293 (314)
++.||.+.+ +++. ..|....-+..+.|||.+.|++.- ....|.|+||+....+....+|.+.++|-+.
T Consensus 30 ~~l~V~~~l~~~~~~L~~pv~T~~~~f~~~~~WnEwl~fpI~i~dLP~~a~L~iti~~~~~~~~~~~vg~~~~~lFd~ 107 (159)
T cd08397 30 SDLFVTCQVFDDGKPLTLPVQTSYKPFKNRRNWNEWLTLPIKYSDLPRNSQLAITIWDVSGTGKAVPFGGTTLSLFNK 107 (159)
T ss_pred CCEEEEEEEEECCEeccCcEEccccCCCCCcccceeEEcccchhcCChhheEEEEEEEecCCCCceEEEEEEEeeECC
Confidence 455555544 3322 244444445668899999998742 3467999999987665677999999998753
No 151
>PF15627 CEP76-C2: CEP76 C2 domain
Probab=93.87 E-value=0.4 Score=39.53 Aligned_cols=92 Identities=14% Similarity=0.294 Sum_probs=66.1
Q ss_pred eEEEEEEEeeecCCCCCC---C--CCCcEEEEEECCeEeeeeeecCCCCCcccceeEEEecCC--------------CCc
Q 021294 206 GLIKVNVVKGTNLAVRDV---M--TSDPYVILALGHQTVKTRVIKSNLNPVWNESLMLSIPEN--------------IPP 266 (314)
Q Consensus 206 g~L~V~v~~a~~L~~~d~---~--~~dPyv~v~l~~~~~kT~~~~~tlnP~w~e~~~f~v~~~--------------~~~ 266 (314)
-.|+|+|..++-+...-. . .+--.+-+.+++|.++|+.+..+.+|.|+|.|.|++... ..+
T Consensus 9 ~yL~l~vlgGkAFld~l~~~~~~~~s~~~l~l~f~~QRF~S~~Vp~~~eP~f~e~Flf~l~~~~~~~~~~~~~lls~~~p 88 (156)
T PF15627_consen 9 RYLHLRVLGGKAFLDHLQEPEGQVCSTFTLHLHFRGQRFRSKPVPCACEPDFNEEFLFELPRDSFGAGSTATTLLSISDP 88 (156)
T ss_pred eEEEEEEeCchhHhhhhhccCCCCceEEEEEEEecCceEecCCcccccCCCCCCcEEEEecccccccccchhHhhcCCCc
Confidence 467888888765422111 1 222344456689999999999999999999999998643 246
Q ss_pred EEEEEEEcCCCCCCceeEEEEEeCccccccc
Q 021294 267 LKVLVYDKDTFTTDDFMGDAEIDIQPLVTAA 297 (314)
Q Consensus 267 L~i~v~d~d~~~~dd~iG~~~v~l~~l~~~~ 297 (314)
|.+-|..-|..+...++|...++...++...
T Consensus 89 ihivli~~d~~~~~~Lv~s~~ldWR~vL~s~ 119 (156)
T PF15627_consen 89 IHIVLIRTDPSGETTLVGSHFLDWRKVLCSG 119 (156)
T ss_pred eEEEEEEecCCCceEeeeeceehHHHHhccC
Confidence 8888877777666688999888888766443
No 152
>PF12416 DUF3668: Cep120 protein; InterPro: IPR022136 This domain family is found in eukaryotes, and is typically between 75 and 114 amino acids in length.
Probab=93.31 E-value=0.8 Score=42.78 Aligned_cols=84 Identities=17% Similarity=0.308 Sum_probs=69.1
Q ss_pred EEEEEEeeecCCCCCCCCCCcEEEEEECCeEeeeeeecCCCCCcccceeEEEecC--------CCCcEEEEEEEcC-CCC
Q 021294 208 IKVNVVKGTNLAVRDVMTSDPYVILALGHQTVKTRVIKSNLNPVWNESLMLSIPE--------NIPPLKVLVYDKD-TFT 278 (314)
Q Consensus 208 L~V~v~~a~~L~~~d~~~~dPyv~v~l~~~~~kT~~~~~tlnP~w~e~~~f~v~~--------~~~~L~i~v~d~d-~~~ 278 (314)
+.|.|++|++++... ...-++..++++....|..+.++-.|.|+..+.-++.. ...+|++++|.-+ .-+
T Consensus 2 ivl~i~egr~F~~~~--~~~~vv~a~~ng~~l~TDpv~~~~~p~f~teL~WE~Dr~~l~~~r~~~tPiKl~c~a~~~~~~ 79 (340)
T PF12416_consen 2 IVLSILEGRNFPQRP--RHPIVVEAKFNGESLETDPVPHTESPQFNTELAWECDRKALKQHRLQRTPIKLQCFAVDGSTG 79 (340)
T ss_pred EEEEEecccCCCCCC--CccEEEEEEeCCceeeecCCCCCCCceeecceeeeccHHHHHHhhccCCceEEEEEEecCCCC
Confidence 578899999998763 23456777889999999999999999999988876642 4578999999988 556
Q ss_pred CCceeEEEEEeCccc
Q 021294 279 TDDFMGDAEIDIQPL 293 (314)
Q Consensus 279 ~dd~iG~~~v~l~~l 293 (314)
..+.+|.+.++|...
T Consensus 80 ~re~iGyv~LdLRsa 94 (340)
T PF12416_consen 80 KRESIGYVVLDLRSA 94 (340)
T ss_pred cceeccEEEEEcccc
Confidence 778999999999988
No 153
>KOG1327 consensus Copine [Signal transduction mechanisms]
Probab=92.19 E-value=0.28 Score=47.97 Aligned_cols=59 Identities=32% Similarity=0.632 Sum_probs=48.4
Q ss_pred eeeeeecCCCCCcccceeEEEec-CCCCcEEEEEEEcCC----CCCCceeEEEEEeCccccccc
Q 021294 239 VKTRVIKSNLNPVWNESLMLSIP-ENIPPLKVLVYDKDT----FTTDDFMGDAEIDIQPLVTAA 297 (314)
Q Consensus 239 ~kT~~~~~tlnP~w~e~~~f~v~-~~~~~L~i~v~d~d~----~~~dd~iG~~~v~l~~l~~~~ 297 (314)
.+|.++.+.+||.|.+.|.+... +....|+|+++|-+. +..++|+|++...+..++...
T Consensus 43 ~rte~i~~~~~p~f~~~~~l~y~fE~vQ~l~~~~~~~~~~~~~l~~~dflg~~~c~l~~ivs~~ 106 (529)
T KOG1327|consen 43 GRTEVIRNVLNPFFTKKFLLQYRFEKVQLLRFEVYDIDSRTPDLSSADFLGTAECTLSQIVSSS 106 (529)
T ss_pred cceeeeeccCCccceeeechhheeeeeeeEEEEEeecCCccCCcchhcccceeeeehhhhhhhh
Confidence 48999999999999999887754 356789999999654 456789999999999887543
No 154
>cd04012 C2A_PI3K_class_II C2 domain first repeat present in class II phosphatidylinositol 3-kinases (PI3Ks). There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. Class II PIK3s act downstream of receptors for growth factors, integrins, and chemokines. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that c
Probab=91.21 E-value=1.1 Score=37.48 Aligned_cols=88 Identities=20% Similarity=0.272 Sum_probs=59.0
Q ss_pred eEEEEEEEeeecCCCCCCC-CCCcEEEEEE--CCeEe----eeeeec----CCCCCcccceeEEEecC----CCCcEEEE
Q 021294 206 GLIKVNVVKGTNLAVRDVM-TSDPYVILAL--GHQTV----KTRVIK----SNLNPVWNESLMLSIPE----NIPPLKVL 270 (314)
Q Consensus 206 g~L~V~v~~a~~L~~~d~~-~~dPyv~v~l--~~~~~----kT~~~~----~tlnP~w~e~~~f~v~~----~~~~L~i~ 270 (314)
..+.|+|..+.+++..-.. ..+-||.+.+ |.+.. .|+... -...+.|||.+.|++.- ....|.|.
T Consensus 8 ~~~~i~v~~~h~~~~~~~~~~~~~~v~~~l~~g~~~L~~~~~T~~~~~~~~f~~~~~Wnewl~F~i~i~~LPrearL~it 87 (171)
T cd04012 8 DLLSVTVSSLHRIPPTWVQSFEDFYLSCSLYHGGRLLCSPVTTKPVKITKSFFPRVVWDEWIEFPIPVCQLPRESRLVLT 87 (171)
T ss_pred ccEEEEEEEeecCChHHhhccccEEEEEEEEECCEECcCceeccccccccCccccccccceEECccchhcCChhHEEEEE
Confidence 4677888888888765433 4677888765 54432 343221 12357799999998642 34569999
Q ss_pred EEEcCCCC---------CCceeEEEEEeCccc
Q 021294 271 VYDKDTFT---------TDDFMGDAEIDIQPL 293 (314)
Q Consensus 271 v~d~d~~~---------~dd~iG~~~v~l~~l 293 (314)
||+..... .+..||.+.++|-+.
T Consensus 88 l~~~~~~~~~~~~~~~~~~~~lG~~~~~LFd~ 119 (171)
T cd04012 88 LYGTTSSPDGGSNKQRMGPEELGWVSLPLFDF 119 (171)
T ss_pred EEEEecCCccccccccccceEEEEEeEeeEcc
Confidence 99866543 356899999998753
No 155
>PF00792 PI3K_C2: Phosphoinositide 3-kinase C2; InterPro: IPR002420 Phosphatidylinositol 3-kinase (PI3-kinase) (2.7.1.137 from EC) is an enzyme that phosphorylates phosphoinositides on the 3-hydroxyl group of the inositol ring. The usually N-terminal C2 domain interacts mainly with the scaffolding helical domain of the enzyme, and exhibits only minor interactions with the catalytic domain []. The domain consists of two four-stranded antiparallel beta-sheets that form a beta-sandwich. Isolated C2 domain binds multilamellar phospholipid vesicles which suggests that this domain could play a role in membrane association. Membrane attachment by C2 domains is typically mediated by the loops connecting beta-strand regions that in other C2 domain-containing proteins are calcium-binding region; GO: 0016303 1-phosphatidylinositol-3-kinase activity, 0046854 phosphatidylinositol phosphorylation, 0048015 phosphatidylinositol-mediated signaling, 0005942 phosphatidylinositol 3-kinase complex; PDB: 1E8W_A 1E8X_A 1E7V_A 1E90_A 1E7U_A 3L54_A 1E8Z_A 2CHX_A 3ML8_A 3OAW_A ....
Probab=90.94 E-value=1.3 Score=35.87 Aligned_cols=54 Identities=20% Similarity=0.319 Sum_probs=39.7
Q ss_pred eeeeecCC-CCCcccceeEEEec--C--CCCcEEEEEEEcCCCCCC----ceeEEEEEeCccc
Q 021294 240 KTRVIKSN-LNPVWNESLMLSIP--E--NIPPLKVLVYDKDTFTTD----DFMGDAEIDIQPL 293 (314)
Q Consensus 240 kT~~~~~t-lnP~w~e~~~f~v~--~--~~~~L~i~v~d~d~~~~d----d~iG~~~v~l~~l 293 (314)
.|.....+ .++.|+|.+.|.+. + ....|.|.||+.+..... ..||.+.++|-+.
T Consensus 23 ~T~~~~~~~~~~~W~e~l~F~i~i~~LPr~a~L~~~l~~~~~~~~~~~~~~~lgw~n~~lFd~ 85 (142)
T PF00792_consen 23 STSYVPFSFSRPKWDEWLTFPIPISDLPREARLCFTLYGVDSKKKSKKKKVPLGWVNLPLFDY 85 (142)
T ss_dssp E-S-EESS-SSEEEEEEEEEEEEGGGS-TTEEEEEEEEEEECSTTT--EEEEEEEEEEESB-T
T ss_pred eccccccccccceEeeEEEeecChHHCChhHeEEEEEEEecCCCccccceeEEEEEEEEeECC
Confidence 55555555 79999999999863 2 456799999997765554 6999999998753
No 156
>cd08695 C2_Dock-B C2 domains found in Dedicator Of CytoKinesis (Dock) class B proteins. Dock-B is one of 4 classes of Dock family proteins. The members here include: Dock3/MOCA (modifier of cell adhesion) and Dock4. Most of these members have been shown to be GEFs specific for Rac, although Dock4 has also been shown to interact indirectly with the Ras family GTPase Rap1, probably through Rap regulatory proteins. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-B members contain a SH3 domain upstream of the C2 domain and a proline-rich region downstream. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold int
Probab=90.85 E-value=3.7 Score=35.03 Aligned_cols=55 Identities=22% Similarity=0.316 Sum_probs=41.4
Q ss_pred eEeeeeeecCCCCCcccceeEEEecC---CCCcEEEEEEEcCCCCC--CceeEEEEEeCc
Q 021294 237 QTVKTRVIKSNLNPVWNESLMLSIPE---NIPPLKVLVYDKDTFTT--DDFMGDAEIDIQ 291 (314)
Q Consensus 237 ~~~kT~~~~~tlnP~w~e~~~f~v~~---~~~~L~i~v~d~d~~~~--dd~iG~~~v~l~ 291 (314)
..++|.+..++.+|.|+|++.+.++. ....|.|+++....-.+ ...+|-+.++|-
T Consensus 53 se~~S~V~yH~~~P~W~EtiKi~lP~~~~~~~HL~FtfrH~S~~~k~~~~pfg~s~lpL~ 112 (189)
T cd08695 53 SEYRSFVLYHNNSPRWNETIKLPIPIDKFRGSHLRFEFRHCSTKDKGEKKLFGFSFVPLM 112 (189)
T ss_pred ceEEEEEEEcCCCCCCceeEEEecChhhCCCeeEEEEEEEeeeccCCCCCceEEEEEeec
Confidence 35688899999999999999999875 34568888877443221 257898888883
No 157
>cd08399 C2_PI3K_class_I_gamma C2 domain present in class I gamma phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, gamma isoform PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a cir
Probab=89.64 E-value=3.3 Score=35.06 Aligned_cols=85 Identities=14% Similarity=0.103 Sum_probs=50.8
Q ss_pred EEEEEEEeeecCCCCCCC-CCCcEEEEEE--CCeE---eeeeeecCCCCCcccceeEEEecC----CCCcEEEEEEEcCC
Q 021294 207 LIKVNVVKGTNLAVRDVM-TSDPYVILAL--GHQT---VKTRVIKSNLNPVWNESLMLSIPE----NIPPLKVLVYDKDT 276 (314)
Q Consensus 207 ~L~V~v~~a~~L~~~d~~-~~dPyv~v~l--~~~~---~kT~~~~~tlnP~w~e~~~f~v~~----~~~~L~i~v~d~d~ 276 (314)
.+.|+|..+..+ ..+.. ...-||.+.+ |... .+|....-+.++.|||.+.|++.- ....|.|.||+...
T Consensus 11 ~friki~~~~~~-~~~~~~~~~l~V~~~Ly~g~~~l~~~~T~~~~~~~~~~WnEwL~f~I~~~dLP~~arLc~ti~~~~~ 89 (178)
T cd08399 11 KFRVKILGIDIP-VLPRNTDLTVFVEANIQHGQQVLCQRRTSPKPFTEEVLWNTWLEFDIKIKDLPKGALLNLQIYCGKA 89 (178)
T ss_pred CEEEEEEeeccc-CcCCCCceEEEEEEEEEECCeecccceeeccCCCCCccccccEECccccccCChhhEEEEEEEEEec
Confidence 456666666532 22211 2335566544 4432 245555556679999999998742 34569999998522
Q ss_pred C----------------CCCceeEEEEEeCcc
Q 021294 277 F----------------TTDDFMGDAEIDIQP 292 (314)
Q Consensus 277 ~----------------~~dd~iG~~~v~l~~ 292 (314)
. ..+..||-+.+.|-+
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~l~wvn~~LFD 121 (178)
T cd08399 90 PALSSKKSAESPSSESKGKHQLLYYVNLLLID 121 (178)
T ss_pred CcccccccccccccccccccceEEEEEEEEEc
Confidence 1 124578888888865
No 158
>KOG1452 consensus Predicted Rho GTPase-activating protein [Signal transduction mechanisms]
Probab=88.16 E-value=0.96 Score=41.29 Aligned_cols=81 Identities=23% Similarity=0.312 Sum_probs=59.4
Q ss_pred ceeeeeEEEEEEEeeecCCCCCC--C-CCCcEEEEEECCe-EeeeeeecCCCCCcccceeEEEecCCCCcEEEEEEEcCC
Q 021294 201 MVEFVGLIKVNVVKGTNLAVRDV--M-TSDPYVILALGHQ-TVKTRVIKSNLNPVWNESLMLSIPENIPPLKVLVYDKDT 276 (314)
Q Consensus 201 ~~e~~g~L~V~v~~a~~L~~~d~--~-~~dPyv~v~l~~~-~~kT~~~~~tlnP~w~e~~~f~v~~~~~~L~i~v~d~d~ 276 (314)
.+...|+|.+.++.+++|..... + ..+.||++..+.+ ..+|.+-....--.|.|.|...+.. ...+.+.||.|+.
T Consensus 46 ~~s~tGiL~~H~~~GRGLr~~p~~kglt~~~ycVle~drqh~aRt~vrs~~~~f~w~e~F~~Dvv~-~~vl~~lvySW~p 124 (442)
T KOG1452|consen 46 LVSSTGILYFHAYNGRGLRMTPQQKGLTVCFYCVLEPDRQHPARTRVRSSGPGFAWAEDFKHDVVN-IEVLHYLVYSWPP 124 (442)
T ss_pred eecccceEEEEEecccccccChhccCceeeeeeeeeecccCccccccccCCCCccchhhceeeccc-ceeeeEEEeecCc
Confidence 44566899999999999965433 3 6788999988765 3566666556667899999988754 3568888999887
Q ss_pred CCCCce
Q 021294 277 FTTDDF 282 (314)
Q Consensus 277 ~~~dd~ 282 (314)
-.++.+
T Consensus 125 q~RHKL 130 (442)
T KOG1452|consen 125 QRRHKL 130 (442)
T ss_pred hhhccc
Confidence 555543
No 159
>cd08687 C2_PKN-like C2 domain in Protein kinase C-like (PKN) proteins. PKN is a lipid-activated serine/threonine kinase. It is a member of the protein kinase C (PKC) superfamily, but lacks a C1 domain. There are at least 3 different isoforms of PKN (PRK1/PKNalpha/PAK1; PKNbeta, and PRK2/PAK2/PKNgamma). The C-terminal region contains the Ser/Thr type protein kinase domain, while the N-terminal region of PKN contains three antiparallel coiled-coil (ACC) finger domains which are relatively rich in charged residues and contain a leucine zipper-like sequence. These domains binds to the small GTPase RhoA. Following these domains is a C2-like domain. Its C-terminal part functions as an auto-inhibitory region. PKNs are not activated by classical PKC activators such as diacylglycerol, phorbol ester or Ca2+, but instead are activated by phospholipids and unsaturated fatty acids. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 struct
Probab=87.60 E-value=2.9 Score=31.25 Aligned_cols=64 Identities=19% Similarity=0.261 Sum_probs=45.7
Q ss_pred CCcEEEEEECC-eEeeeeeecCCCCCcccceeEEEecCCCCcEEEEEEEcCCCCCCceeEEEEEeCcccc
Q 021294 226 SDPYVILALGH-QTVKTRVIKSNLNPVWNESLMLSIPENIPPLKVLVYDKDTFTTDDFMGDAEIDIQPLV 294 (314)
Q Consensus 226 ~dPyv~v~l~~-~~~kT~~~~~tlnP~w~e~~~f~v~~~~~~L~i~v~d~d~~~~dd~iG~~~v~l~~l~ 294 (314)
.+..+++.+++ ...+|..... .+..|++.|.|++.. ...|.|.||-+|- ..+.|...+.|++..
T Consensus 9 ~eV~avLklDn~~VgqT~Wk~~-s~q~WDQ~Fti~LdR-sRELEI~VywrD~---RslCav~~lrLEd~~ 73 (98)
T cd08687 9 SEVSAVLKLDNTVVGQTQWKPK-SNQAWDQSFTLELER-SRELEIAVYWRDW---RSLCAVKFLKLEDER 73 (98)
T ss_pred cceEEEEEEcCeEEeecccccc-ccccccceeEEEeec-ccEEEEEEEEecc---hhhhhheeeEhhhhc
Confidence 46667788876 4456665543 578999999999965 4689999998765 245666777777743
No 160
>cd08694 C2_Dock-A C2 domains found in Dedicator Of CytoKinesis (Dock) class A proteins. Dock-A is one of 4 classes of Dock family proteins. The members here include: Dock180/Dock1, Dock2, and Dock5. Most of these members have been shown to be GEFs specific for Rac. Dock5 has not been well characterized to date, but most likely also is a GEF specific for Rac. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-A members contain a proline-rich region and a SH3 domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=87.42 E-value=4.9 Score=34.47 Aligned_cols=55 Identities=13% Similarity=0.228 Sum_probs=41.2
Q ss_pred eEeeeeeecCCCCCcccceeEEEecC---CCCcEEEEEEEcCCCC----CCceeEEEEEeCc
Q 021294 237 QTVKTRVIKSNLNPVWNESLMLSIPE---NIPPLKVLVYDKDTFT----TDDFMGDAEIDIQ 291 (314)
Q Consensus 237 ~~~kT~~~~~tlnP~w~e~~~f~v~~---~~~~L~i~v~d~d~~~----~dd~iG~~~v~l~ 291 (314)
...+|-+.-++.+|.|+|++.+.++. ....|.|+++....-. ....+|-+.++|-
T Consensus 53 se~~S~V~Yh~~~P~W~EtIKl~lP~~~~~~~HL~FtfrH~S~~~~kd~~e~pfg~s~lpL~ 114 (196)
T cd08694 53 DEYKSVIYYQVDKPKWFETFKVAIPIEDFKSSHLRFTFKHRSSNEAKDKSEKPFALSFVKLM 114 (196)
T ss_pred eeEEEEEEeecCCCCCceeEEEecChhhCCCeEEEEEEEeeccccccCCCCCceEEEEEeee
Confidence 45788888889999999999999875 3466899998754221 2246888888874
No 161
>PF15625 CC2D2AN-C2: CC2D2A N-terminal C2 domain
Probab=85.53 E-value=5.6 Score=33.24 Aligned_cols=68 Identities=16% Similarity=0.281 Sum_probs=49.7
Q ss_pred CCcEEEEEECCeE-eeeeeecC--CCCCcccceeEEEecCCCCcEEEEEEEcCCCCCCceeEEEEEeCcccc
Q 021294 226 SDPYVILALGHQT-VKTRVIKS--NLNPVWNESLMLSIPENIPPLKVLVYDKDTFTTDDFMGDAEIDIQPLV 294 (314)
Q Consensus 226 ~dPyv~v~l~~~~-~kT~~~~~--tlnP~w~e~~~f~v~~~~~~L~i~v~d~d~~~~dd~iG~~~v~l~~l~ 294 (314)
..-|+++.++++. .+|+...- ...-.|+|.|.+.+..-.+.|.|+||.... ..+.+|+++.+++-...
T Consensus 37 ~~~~ikl~~N~k~V~~T~~~~l~~dF~v~f~~~f~v~i~~~Pesi~l~i~E~~~-~~~~~la~v~vpvP~~~ 107 (168)
T PF15625_consen 37 TRYYIKLFFNDKEVSRTRSRPLWSDFRVHFNEIFNVQITRWPESIKLEIYEKSG-LSDRLLAEVFVPVPGST 107 (168)
T ss_pred eeEEEEEEECCEEEEeeeeEecCCCeEEeccCEEEEEEecCCCEEEEEEEEccC-ccceEEEEEEeeCCCCc
Confidence 3567788886654 34444332 334467888998887777889999999887 67889999999986554
No 162
>PF10358 NT-C2: N-terminal C2 in EEIG1 and EHBP1 proteins; InterPro: IPR019448 This entry represents the N-terminal 150 residues of a family of conserved proteins which are induced by oestrogen []. Proteins in this entry are usually annotated as Fam102A, Fam102B, or Eeig1 (early oestrogen-responsive gene product 1).
Probab=85.45 E-value=8.1 Score=30.86 Aligned_cols=88 Identities=17% Similarity=0.267 Sum_probs=56.7
Q ss_pred EEEEEEEeeecCCCCCCCCCCcEEEEEECCeE---eeeeeec-CCCCCcccceeEEEec----C-----CCCcEEEEEEE
Q 021294 207 LIKVNVVKGTNLAVRDVMTSDPYVILALGHQT---VKTRVIK-SNLNPVWNESLMLSIP----E-----NIPPLKVLVYD 273 (314)
Q Consensus 207 ~L~V~v~~a~~L~~~d~~~~dPyv~v~l~~~~---~kT~~~~-~tlnP~w~e~~~f~v~----~-----~~~~L~i~v~d 273 (314)
.+.|.|.+..+++.. ....||.+..+... ..|.... .+..-.|+|.|.+.+. . ....+.|.|+.
T Consensus 8 ~~~l~i~~l~~~p~~---~~~v~v~wkr~~~~~~~~~t~~~~~~~~~v~w~e~~~~~~tl~~~~k~~~~~~K~~~~~v~~ 84 (143)
T PF10358_consen 8 QFDLTIHELENLPSS---NGKVFVKWKRGDKSKGSGTTSRANVKNGKVQWNEEFSFPCTLYRDKKSKEFQPKELKFSVFE 84 (143)
T ss_pred EEEEEEEEeECcCCC---CCEEEEEEEECCCCccceeeeeeeccccEEEEeeEEEEEEEEEEcCCCCcEeeEEEEEEEEE
Confidence 566777777777662 23445666555543 4444333 3455689999988752 1 22458889988
Q ss_pred cCCCCCCceeEEEEEeCccccccc
Q 021294 274 KDTFTTDDFMGDAEIDIQPLVTAA 297 (314)
Q Consensus 274 ~d~~~~dd~iG~~~v~l~~l~~~~ 297 (314)
...-+....+|.+.++|.++....
T Consensus 85 ~~~~~~k~~lG~~~inLaey~~~~ 108 (143)
T PF10358_consen 85 VDGSGKKKVLGKVSINLAEYANED 108 (143)
T ss_pred ecCCCccceEEEEEEEHHHhhCcC
Confidence 743333368999999999998653
No 163
>PRK12495 hypothetical protein; Provisional
Probab=85.34 E-value=0.32 Score=42.01 Aligned_cols=39 Identities=31% Similarity=0.632 Sum_probs=28.9
Q ss_pred HHHHHHHHHc---CCCCCCCcCCCCCCCCeEEecccceechhhHHH
Q 021294 16 PRARLENLLR---QPGNRHCADCGSPDPKWVSLSTGVFICIKCSGI 58 (314)
Q Consensus 16 ~~~~~~~l~~---~~~N~~C~dC~~~~p~w~s~~~g~~~C~~C~~~ 58 (314)
..+++-+||. ...+..|-+||.+=|.+ -|+.+|..|..+
T Consensus 26 ~~~~ma~lL~~gatmsa~hC~~CG~PIpa~----pG~~~Cp~CQ~~ 67 (226)
T PRK12495 26 ATERMSELLLQGATMTNAHCDECGDPIFRH----DGQEFCPTCQQP 67 (226)
T ss_pred HHHHHHHHHHhhcccchhhcccccCcccCC----CCeeECCCCCCc
Confidence 3444555554 45789999999999832 599999999755
No 164
>PF14429 DOCK-C2: C2 domain in Dock180 and Zizimin proteins; PDB: 3L4C_A.
Probab=84.95 E-value=2.6 Score=35.68 Aligned_cols=55 Identities=18% Similarity=0.248 Sum_probs=33.6
Q ss_pred EeeeeeecCCCCCcccceeEEEecC---CCCcEEEEEEEcCCCCC---CceeEEEEEeCcc
Q 021294 238 TVKTRVIKSNLNPVWNESLMLSIPE---NIPPLKVLVYDKDTFTT---DDFMGDAEIDIQP 292 (314)
Q Consensus 238 ~~kT~~~~~tlnP~w~e~~~f~v~~---~~~~L~i~v~d~d~~~~---dd~iG~~~v~l~~ 292 (314)
...|.+.-++.+|.|+|+|.+.++. ....|.|++++...-.. ...+|.+.++|-+
T Consensus 60 ~~~S~v~yh~k~P~f~deiKi~LP~~l~~~~HLlFtf~h~s~~~~~~~~~~~g~a~lpL~~ 120 (184)
T PF14429_consen 60 SYYSSVYYHNKNPQFNDEIKIQLPPDLFPKHHLLFTFYHVSCKESKEKSKPFGYAFLPLMD 120 (184)
T ss_dssp -EE----TT-SS-EEEEEEEEEE-CCCCTTEEEEEEEEE---SSSS-SS-EEEEEEEESB-
T ss_pred EEEEEEEecCCCCCccEEEEEEcCchhcccEEEEEEEEeeccccccCccceeEEEEEEeee
Confidence 4577788888999999999999976 23568899998654322 2689999999876
No 165
>PF00643 zf-B_box: B-box zinc finger; InterPro: IPR000315 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents B-box-type zinc finger domains, which are around 40 residues in length. B-box zinc fingers can be divided into two groups, where types 1 and 2 B-box domains differ in their consensus sequence and in the spacing of the 7-8 zinc-binding residues. Several proteins contain both types 1 and 2 B-boxes, suggesting some level of cooperativity between these two domains. B-box domains are found in over 1500 proteins from a variety of organisms. They are found in TRIM (tripartite motif) proteins that consist of an N-terminal RING finger (originally called an A-box), followed by 1-2 B-box domains and a coiled-coil domain (also called RBCC for Ring, B-box, Coiled-Coil). TRIM proteins contain a type 2 B-box domain, and may also contain a type 1 B-box. In proteins that do not contain RING or coiled-coil domains, the B-box domain is primarily type 2. Many type 2 B-box proteins are involved in ubiquitinylation. Proteins containing a B-box zinc finger domain include transcription factors, ribonucleoproteins and proto-oncoproteins; for example, MID1, MID2, TRIM9, TNL, TRIM36, TRIM63, TRIFIC, NCL1 and CONSTANS-like proteins []. The microtubule-associated E3 ligase MID1 (6.3.2 from EC) contains a type 1 B-box zinc finger domain. MID1 specifically binds Alpha-4, which in turn recruits the catalytic subunit of phosphatase 2A (PP2Ac). This complex is required for targeting of PP2Ac for proteasome-mediated degradation. The MID1 B-box coordinates two zinc ions and adopts a beta/beta/alpha cross-brace structure similar to that of ZZ, PHD, RING and FYVE zinc fingers [, ]. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0005622 intracellular; PDB: 3DDT_B 2D8U_A 3Q1D_A 2EGM_A 2YVR_B 2DJA_A 2DQ5_A 2JUN_A 2YRG_A 2DID_A ....
Probab=83.38 E-value=1.2 Score=27.78 Aligned_cols=33 Identities=12% Similarity=0.316 Sum_probs=28.5
Q ss_pred CCCCcCCCCCCCCeEEecccceechhhHHH-Hhh
Q 021294 29 NRHCADCGSPDPKWVSLSTGVFICIKCSGI-HRS 61 (314)
Q Consensus 29 N~~C~dC~~~~p~w~s~~~g~~~C~~C~~~-Hr~ 61 (314)
+..|..|......+...+=++++|..|... |+.
T Consensus 3 ~~~C~~H~~~~~~~~C~~C~~~~C~~C~~~~H~~ 36 (42)
T PF00643_consen 3 EPKCPEHPEEPLSLFCEDCNEPLCSECTVSGHKG 36 (42)
T ss_dssp SSB-SSTTTSBEEEEETTTTEEEEHHHHHTSTTT
T ss_pred CccCccCCccceEEEecCCCCccCccCCCCCCCC
Confidence 578999998878899999999999999988 886
No 166
>smart00142 PI3K_C2 Phosphoinositide 3-kinase, region postulated to contain C2 domain. Outlier of C2 family.
Probab=82.31 E-value=10 Score=28.64 Aligned_cols=68 Identities=22% Similarity=0.250 Sum_probs=40.2
Q ss_pred EEEEEEeeecCCCCCCC-CCCcEEEEEE--CCeE----eeeeeecCCCCCcccceeEEEecC----CCCcEEEEEEEcC
Q 021294 208 IKVNVVKGTNLAVRDVM-TSDPYVILAL--GHQT----VKTRVIKSNLNPVWNESLMLSIPE----NIPPLKVLVYDKD 275 (314)
Q Consensus 208 L~V~v~~a~~L~~~d~~-~~dPyv~v~l--~~~~----~kT~~~~~tlnP~w~e~~~f~v~~----~~~~L~i~v~d~d 275 (314)
+.+.+....+....... ..+-||.+.+ |++. ..|....-...+.|||.+.|++.- ....|.|.+|+..
T Consensus 13 ~~~~~~~~~~~~l~~~~~~~~l~v~~~l~~g~~~l~~pv~t~~~~~~~~~~Wnewl~f~i~i~~LPr~a~L~~~i~~~~ 91 (100)
T smart00142 13 LVITIALIHGIPLNWSRDYSDLYVEIQLYHGGKLLCLPVSTSYKPFFPSVKWNEWLTFPIQISDLPREARLCITIYEVK 91 (100)
T ss_pred eEEEEEEeeCCCcccccCcceEEEEEEEEECCEEccCcEEecccCCCCCcccceeEEccCchhcCChhhEEEEEEEEee
Confidence 33444444444433222 2467777765 4432 244444445568999999998642 3456999999854
No 167
>PRK00085 recO DNA repair protein RecO; Reviewed
Probab=81.97 E-value=0.99 Score=40.00 Aligned_cols=31 Identities=32% Similarity=0.757 Sum_probs=26.9
Q ss_pred CCCCCCCcCCCCCCC-CeEEecccceechhhH
Q 021294 26 QPGNRHCADCGSPDP-KWVSLSTGVFICIKCS 56 (314)
Q Consensus 26 ~~~N~~C~dC~~~~p-~w~s~~~g~~~C~~C~ 56 (314)
.|.-..|+-||.+.. .|.+..-|.++|..|.
T Consensus 146 ~p~l~~C~~Cg~~~~~~~f~~~~gg~~c~~c~ 177 (247)
T PRK00085 146 GLDLDHCAVCGAPGDHRYFSPKEGGAVCSECG 177 (247)
T ss_pred ccchhhHhcCCCCCCceEEecccCCccccccc
Confidence 466689999998755 8999999999999997
No 168
>PF11781 RRN7: RNA polymerase I-specific transcription initiation factor Rrn7; InterPro: IPR021752 Rrn7 is a transcription binding factor that associates strongly with both Rrn6 and Rrn11 to form a complex which itself binds the TATA-binding protein and is required for transcription by the core domain of the RNA PolI promoter [],[].
Probab=80.44 E-value=1.4 Score=26.86 Aligned_cols=27 Identities=33% Similarity=0.893 Sum_probs=22.6
Q ss_pred CCCCCCcCCCCCCCCeEEecccceechhhH
Q 021294 27 PGNRHCADCGSPDPKWVSLSTGVFICIKCS 56 (314)
Q Consensus 27 ~~N~~C~dC~~~~p~w~s~~~g~~~C~~C~ 56 (314)
..|..|..|++. |...+=|-+.|..|-
T Consensus 6 ~~~~~C~~C~~~---~~~~~dG~~yC~~cG 32 (36)
T PF11781_consen 6 GPNEPCPVCGSR---WFYSDDGFYYCDRCG 32 (36)
T ss_pred cCCCcCCCCCCe---EeEccCCEEEhhhCc
Confidence 446679999987 888888999999983
No 169
>PF01286 XPA_N: XPA protein N-terminal; InterPro: IPR022652 Xeroderma pigmentosum (XP) [] is a human autosomal recessive disease, characterised by a high incidence of sunlight-induced skin cancer. Skin cells of individual's with this condition are hypersensitive to ultraviolet light, due to defects in the incision step of DNA excision repair. There are a minimum of seven genetic complementation groups involved in this pathway: XP-A to XP-G. XP-A is the most severe form of the disease and is due to defects in a 30 kDa nuclear protein called XPA (or XPAC) []. The sequence of the XPA protein is conserved from higher eukaryotes [] to yeast (gene RAD14) []. XPA is a hydrophilic protein of 247 to 296 amino-acid residues which has a C4-type zinc finger motif in its central section. This entry contains the zinc-finger containing region in the XPA protein. It is found N-terminal to PF05181 from PFAM ; PDB: 1D4U_A 1XPA_A.
Probab=79.45 E-value=0.39 Score=28.88 Aligned_cols=27 Identities=26% Similarity=0.706 Sum_probs=16.6
Q ss_pred CCCcCCCCCC-CCeEEecccceechhhH
Q 021294 30 RHCADCGSPD-PKWVSLSTGVFICIKCS 56 (314)
Q Consensus 30 ~~C~dC~~~~-p~w~s~~~g~~~C~~C~ 56 (314)
..|.+|+.+. -+|..-+|+.-||..|.
T Consensus 4 ~~C~eC~~~f~dSyL~~~F~~~VCD~CR 31 (34)
T PF01286_consen 4 PKCDECGKPFMDSYLLNNFDLPVCDKCR 31 (34)
T ss_dssp EE-TTT--EES-SSCCCCTS-S--TTT-
T ss_pred chHhHhCCHHHHHHHHHhCCcccccccc
Confidence 4699999864 48999999999999994
No 170
>PF00320 GATA: GATA zinc finger; InterPro: IPR000679 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents GATA-type zinc fingers (Znf). A number of transcription factors (including erythroid-specific transcription factor and nitrogen regulatory proteins), specifically bind the DNA sequence (A/T)GATA(A/G) [] in the regulatory regions of genes. They are consequently termed GATA-binding transcription factors. The interactions occur via highly-conserved Znf domains in which the zinc ion is coordinated by 4 cysteine residues [, ]. NMR studies have shown the core of the Znf to comprise 2 irregular anti-parallel beta-sheets and an alpha-helix, followed by a long loop to the C-terminal end of the finger. The N-terminal part, which includes the helix, is similar in structure, but not sequence, to the N-terminal zinc module of the glucocorticoid receptor DNA-binding domain. The helix and the loop connecting the 2 beta-sheets interact with the major groove of the DNA, while the C-terminal tail wraps around into the minor groove. It is this tail that is the essential determinant of specific binding. Interactions between the Znf and DNA are mainly hydrophobic, explaining the preponderance of thymines in the binding site; a large number of interactions with the phosphate backbone have also been observed []. Two GATA zinc fingers are found in the GATA transcription factors. However there are several proteins which only contains a single copy of the domain. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0008270 zinc ion binding, 0043565 sequence-specific DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 3GAT_A 2GAT_A 1GAU_A 1GAT_A 1Y0J_A 1GNF_A 2L6Z_A 2L6Y_A 3DFV_D 3DFX_B ....
Probab=77.36 E-value=3.6 Score=24.95 Aligned_cols=32 Identities=28% Similarity=0.816 Sum_probs=23.9
Q ss_pred CcCCCCC-CCCeEEecccce-echhhHHHHhhcC
Q 021294 32 CADCGSP-DPKWVSLSTGVF-ICIKCSGIHRSLG 63 (314)
Q Consensus 32 C~dC~~~-~p~w~s~~~g~~-~C~~C~~~Hr~lg 63 (314)
|.+|+.. .|.|=....|-. +|-.|.-.+|..|
T Consensus 1 C~~C~tt~t~~WR~~~~g~~~LCn~Cg~~~kk~~ 34 (36)
T PF00320_consen 1 CSNCGTTETPQWRRGPNGNRTLCNACGLYYKKYG 34 (36)
T ss_dssp -TTT--ST-SSEEEETTSEE-EEHHHHHHHHHHS
T ss_pred CcCCcCCCCchhhcCCCCCCHHHHHHHHHHHHhC
Confidence 8899986 689999988888 9999988777654
No 171
>TIGR00613 reco DNA repair protein RecO. All proteins in this family for which functions are known are DNA binding proteins that are involved in the initiation of recombination or recombinational repair.
Probab=76.54 E-value=2 Score=37.84 Aligned_cols=33 Identities=27% Similarity=0.583 Sum_probs=27.7
Q ss_pred CCCCCCCcCCCCCCC-CeEEecccceechhhHHH
Q 021294 26 QPGNRHCADCGSPDP-KWVSLSTGVFICIKCSGI 58 (314)
Q Consensus 26 ~~~N~~C~dC~~~~p-~w~s~~~g~~~C~~C~~~ 58 (314)
.|.-..|+.||..++ .|.+...|.++|..|...
T Consensus 144 ~p~l~~C~~cg~~~~~~~fs~~~gg~~C~~c~~~ 177 (241)
T TIGR00613 144 ALDLDKCAVCGSKEDLIYFSMTYGGALCRQCGEK 177 (241)
T ss_pred CcccCccCCCCCcCCCceEchhcCeEEChhhCcc
Confidence 567789999998654 788999999999999764
No 172
>PF08271 TF_Zn_Ribbon: TFIIB zinc-binding; InterPro: IPR013137 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a zinc finger motif found in transcription factor IIB (TFIIB). In eukaryotes the initiation of transcription of protein encoding genes by the polymerase II complexe (Pol II) is modulated by general and specific transcription factors. The general transcription factors operate through common promoters elements (such as the TATA box). At least seven different proteins associate to form the general transcription factors: TFIIA, -IIB, -IID, -IIE, -IIF, -IIG, and -IIH []. TFIIB and TFIID are responsible for promoter recognition and interaction with pol II; together with Pol II, they form a minimal initiation complex capable of transcription under certain conditions. The TATA box of a Pol II promoter is bound in the initiation complex by the TBP subunit of TFIID, which bends the DNA around the C-terminal domain of TFIIB whereas the N-terminal zinc finger of TFIIB interacts with Pol II [, ]. The TFIIB zinc finger adopts a zinc ribbon fold characterised by two beta-hairpins forming two structurally similar zinc-binding sub-sites []. The zinc finger contacts the rbp1 subunit of Pol II through its dock domain, a conserved region of about 70 amino acids located close to the polymerase active site []. In the Pol II complex this surface is located near the RNA exit groove. Interestingly this sequence is best conserved in the three polymerases that utilise a TFIIB-like general transcription factor (Pol II, Pol III, and archaeal RNA polymerase) but not in Pol I []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0006355 regulation of transcription, DNA-dependent; PDB: 1VD4_A 1PFT_A 3K1F_M 3K7A_M 1RO4_A 1RLY_A 1DL6_A.
Probab=75.79 E-value=1.7 Score=27.52 Aligned_cols=25 Identities=28% Similarity=0.826 Sum_probs=19.5
Q ss_pred CCcCCCCCCCCeEEecccceechhhH
Q 021294 31 HCADCGSPDPKWVSLSTGVFICIKCS 56 (314)
Q Consensus 31 ~C~dC~~~~p~w~s~~~g~~~C~~C~ 56 (314)
.|-.||+.. .-..-.-|-++|..|.
T Consensus 2 ~Cp~Cg~~~-~~~D~~~g~~vC~~CG 26 (43)
T PF08271_consen 2 KCPNCGSKE-IVFDPERGELVCPNCG 26 (43)
T ss_dssp SBTTTSSSE-EEEETTTTEEEETTT-
T ss_pred CCcCCcCCc-eEEcCCCCeEECCCCC
Confidence 589999976 4555678999999994
No 173
>cd08696 C2_Dock-C C2 domains found in Dedicator Of CytoKinesis (Dock) class C proteins. Dock-C is one of 4 classes of Dock family proteins. The members here include: Dock6/Zir1, Dock7/Zir2, and Dock8/Zir3. Dock-C members are GEFs for both Rac and Cdc42. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-C members contain a functionally uncharacterized domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strand
Probab=74.47 E-value=13 Score=31.52 Aligned_cols=55 Identities=15% Similarity=0.207 Sum_probs=41.1
Q ss_pred eEeeeeeecCCCCCcccceeEEEecC---CCCcEEEEEEEcCCCC------CCceeEEEEEeCc
Q 021294 237 QTVKTRVIKSNLNPVWNESLMLSIPE---NIPPLKVLVYDKDTFT------TDDFMGDAEIDIQ 291 (314)
Q Consensus 237 ~~~kT~~~~~tlnP~w~e~~~f~v~~---~~~~L~i~v~d~d~~~------~dd~iG~~~v~l~ 291 (314)
....|.+.-++.+|.|++++.+.++. ....|.|++++.+.-. ....+|-+.++|-
T Consensus 54 ~~~~S~V~yHnk~P~f~DEiKi~LP~~l~~~hHLlFtF~Hvs~~~k~~~~~~e~~~Gys~lPL~ 117 (179)
T cd08696 54 TEAYTAVTYHNKSPDFYDEIKIKLPADLTDNHHLLFTFYHISCQKKQEGGSVETPIGYTWLPLL 117 (179)
T ss_pred eeEEEEEEEeCCCCcccceEEEEcCCCCCCCeEEEEEEEEeeccccccCCCccceEEEEEEeee
Confidence 34678888899999999999999865 3456889998844321 1346899988875
No 174
>cd08679 C2_DOCK180_related C2 domains found in Dedicator Of CytoKinesis 1 (DOCK 180) and related proteins. Dock180 was first identified as an 180kd proto-oncogene product c-Crk-interacting protein involved in actin cytoskeletal changes. It is now known that it has Rac-specific GEF activity, but lacks the conventional Dbl homology (DH) domain. There are 10 additional related proteins that can be divided into four classes based on sequence similarity and domain organization: Dock-A which includes Dock180/Dock1, Dock2, and Dock5; Dock-B which includes Dock3/MOCA (modifier of cell adhesion) and Dock4; Dock-C which includes Dock6/Zir1, Dock7/Zir2, and Dock8/Zir3; and Dock-D, which includes Dock9/Zizimin1, Dock10/Zizimin3, and Dock11/Zizimin2/ACG (activated Cdc42-associated GEF). Most of members of classes Dock-A and Dock-B are the GEFs specific for Rac. Those of Dock-D are Cdc42-specific GEFs while those of Dock-C are the GEFs for both. All Dock180-related proteins have two common homolo
Probab=73.66 E-value=13 Score=31.17 Aligned_cols=53 Identities=19% Similarity=0.276 Sum_probs=38.7
Q ss_pred eeeeeecCCCCCcccceeEEEecC---CCCcEEEEEEEcCCC-----CCCceeEEEEEeCcc
Q 021294 239 VKTRVIKSNLNPVWNESLMLSIPE---NIPPLKVLVYDKDTF-----TTDDFMGDAEIDIQP 292 (314)
Q Consensus 239 ~kT~~~~~tlnP~w~e~~~f~v~~---~~~~L~i~v~d~d~~-----~~dd~iG~~~v~l~~ 292 (314)
+++-+..+ .+|.|++++.+.++. ....|.|++++...- .....+|-+.++|-+
T Consensus 55 ~~sv~~~~-k~p~f~deiKi~LP~~l~~~~HLlFtf~hv~~~~~~~~~~~~~~g~a~lpL~~ 115 (178)
T cd08679 55 YTSVVYYH-KNPVFNDEIKIQLPADLTPQHHLLFTFYHVSSKKKQGDKEETPFGYAFLPLMD 115 (178)
T ss_pred EEEEEEcC-CCCCCceeEEEecCCccCCCeEEEEEEEccccccccCCCccceEEEEEEeccc
Confidence 34444444 899999999999865 345688999985532 335689999999875
No 175
>PRK11019 hypothetical protein; Provisional
Probab=71.65 E-value=2.3 Score=31.54 Aligned_cols=37 Identities=24% Similarity=0.648 Sum_probs=26.1
Q ss_pred CCCCCcCCCCCCC--CeEEecccceechhhHHHHhhcCCc
Q 021294 28 GNRHCADCGSPDP--KWVSLSTGVFICIKCSGIHRSLGVH 65 (314)
Q Consensus 28 ~N~~C~dC~~~~p--~w~s~~~g~~~C~~C~~~Hr~lg~~ 65 (314)
.-..|.|||.+=| .+..+. ++-.|++|...+-..+.|
T Consensus 35 syg~C~~CG~~Ip~~Rl~A~P-~a~~Cv~Cq~~~E~~~k~ 73 (88)
T PRK11019 35 SLTECEECGEPIPEARRKAIP-GVRLCVACQQEKDLQQAA 73 (88)
T ss_pred cCCeeCcCCCcCcHHHHhhcC-CccccHHHHHHHHHHHhH
Confidence 3579999998754 444444 678899999987544433
No 176
>KOG2419 consensus Phosphatidylserine decarboxylase [Lipid transport and metabolism]
Probab=71.00 E-value=0.24 Score=49.08 Aligned_cols=78 Identities=17% Similarity=0.202 Sum_probs=53.3
Q ss_pred cceeeeeEEEEEEEeeecCCCC--CC---CCCCcEEEEEECCeEeeeeeecCCCCCcccceeEEEecC--CCCcEEEEEE
Q 021294 200 AMVEFVGLIKVNVVKGTNLAVR--DV---MTSDPYVILALGHQTVKTRVIKSNLNPVWNESLMLSIPE--NIPPLKVLVY 272 (314)
Q Consensus 200 ~~~e~~g~L~V~v~~a~~L~~~--d~---~~~dPyv~v~l~~~~~kT~~~~~tlnP~w~e~~~f~v~~--~~~~L~i~v~ 272 (314)
+..++.|+...+++.|.+++.. ++ ...++++.+.++.+.++|++..++.+|+|||. .++... ....|...|.
T Consensus 274 ~~dd~~gi~ll~lI~a~~~~~i~~~~~~~f~~~~~~itsf~~~~frt~~~~~~e~piyNe~-~~E~~~Fqsn~~l~~kiv 352 (975)
T KOG2419|consen 274 DADDFTGIALLTLIGAEMKYDIVEDVAKLFKDKWLAITSFGEQTFRTEISDDTEKPIYNED-EREDSDFQSNRYLGNKIV 352 (975)
T ss_pred ccchhhhhHHHHHhhhhcccchhhhhhhccCCCchheeecchhhhhhhhhccccccccccc-ccccccchhhHHHhhhcc
Confidence 4456677777777777777432 22 26789999999999999999999999999996 444432 2233444444
Q ss_pred EcCCCC
Q 021294 273 DKDTFT 278 (314)
Q Consensus 273 d~d~~~ 278 (314)
+++.+.
T Consensus 353 ~~~~~~ 358 (975)
T KOG2419|consen 353 GYCELD 358 (975)
T ss_pred cccccc
Confidence 444433
No 177
>cd08697 C2_Dock-D C2 domains found in Dedicator Of CytoKinesis (Dock) class C proteins. Dock-D is one of 4 classes of Dock family proteins. The members here include: Dock9/Zizimin1, Dock10/Zizimin3, and Dock11/Zizimin2/ACG (activated Cdc42-associated GEF). Dock-D are Cdc42-specific GEFs. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-D members contain a functionally uncharacterized domain and a PH domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The PH domain broadly binds to phospholipids and is thought to be involved in targeting the plasma membrane. The C2 domain was first identified in PKC. C2 domains fold into an 8-stande
Probab=70.00 E-value=20 Score=30.47 Aligned_cols=56 Identities=16% Similarity=0.246 Sum_probs=41.8
Q ss_pred eEeeeeeecCCCCCcccceeEEEecC---CCCcEEEEEEEcCCC---------CCCceeEEEEEeCcc
Q 021294 237 QTVKTRVIKSNLNPVWNESLMLSIPE---NIPPLKVLVYDKDTF---------TTDDFMGDAEIDIQP 292 (314)
Q Consensus 237 ~~~kT~~~~~tlnP~w~e~~~f~v~~---~~~~L~i~v~d~d~~---------~~dd~iG~~~v~l~~ 292 (314)
....|.+.-++.+|.|.|++.+.++. ....|.|++|+.+.- .....+|-+.++|-.
T Consensus 56 ~~~~s~V~yh~k~P~f~dEiKI~LP~~l~~~hHLlFtFyHvsc~~~~k~~~~~~~e~~~Gys~lPLl~ 123 (185)
T cd08697 56 TSAYAAVLHHNQNPEFYDEIKIELPTQLHEKHHLLFTFYHVSCDINKKGKKKDGVETPVGYAWLPLLK 123 (185)
T ss_pred eEEEEEEEEcCCCCccceeEEEecCCcCCCCeeEEEEEEeeccccccccccCCCccceEEEEEEeeec
Confidence 35678888889999999999998865 345688999986421 123568999999854
No 178
>PF12760 Zn_Tnp_IS1595: Transposase zinc-ribbon domain; InterPro: IPR024442 This zinc binding domain is found in a range of transposase proteins such as ISSPO8, ISSOD11, ISRSSP2 etc. It may be a zinc-binding beta ribbon domain that could bind DNA.
Probab=65.76 E-value=5.6 Score=25.48 Aligned_cols=41 Identities=29% Similarity=0.594 Sum_probs=27.2
Q ss_pred CcHHHHHHHHHcCCCCCCCcCCCCCCCCeEEecccceechhhH
Q 021294 14 SGPRARLENLLRQPGNRHCADCGSPDPKWVSLSTGVFICIKCS 56 (314)
Q Consensus 14 ~~~~~~~~~l~~~~~N~~C~dC~~~~p~w~s~~~g~~~C~~C~ 56 (314)
+...+.|.++ +-|..-+|.-||.....++.- .+.+-|-.|.
T Consensus 4 ~~c~~~l~~~-RW~~g~~CP~Cg~~~~~~~~~-~~~~~C~~C~ 44 (46)
T PF12760_consen 4 EACREYLEEI-RWPDGFVCPHCGSTKHYRLKT-RGRYRCKACR 44 (46)
T ss_pred HHHHHHHHHh-cCCCCCCCCCCCCeeeEEeCC-CCeEECCCCC
Confidence 3344455544 445558899999985544433 6899998884
No 179
>COG1381 RecO Recombinational DNA repair protein (RecF pathway) [DNA replication, recombination, and repair]
Probab=63.84 E-value=4 Score=36.49 Aligned_cols=30 Identities=40% Similarity=0.937 Sum_probs=26.5
Q ss_pred CCCCCCcCCCCCCC-CeEEecccceechhhH
Q 021294 27 PGNRHCADCGSPDP-KWVSLSTGVFICIKCS 56 (314)
Q Consensus 27 ~~N~~C~dC~~~~p-~w~s~~~g~~~C~~C~ 56 (314)
|.=..|+.||.+.+ ...+.-.|-++|..|+
T Consensus 152 ~~l~~Ca~cg~~~~~~~~s~~~~~~~C~~~~ 182 (251)
T COG1381 152 PNLTSCARCGTPVDPVYFSPKSGGFLCSKCA 182 (251)
T ss_pred cchHHHhCcCCcCCCcceeeccCcccchhcc
Confidence 45589999999865 7999999999999998
No 180
>smart00401 ZnF_GATA zinc finger binding to DNA consensus sequence [AT]GATA[AG].
Probab=63.80 E-value=7.2 Score=25.78 Aligned_cols=37 Identities=27% Similarity=0.693 Sum_probs=29.8
Q ss_pred CCCCCcCCCCC-CCCeEEecccc-eechhhHHHHhhcCC
Q 021294 28 GNRHCADCGSP-DPKWVSLSTGV-FICIKCSGIHRSLGV 64 (314)
Q Consensus 28 ~N~~C~dC~~~-~p~w~s~~~g~-~~C~~C~~~Hr~lg~ 64 (314)
....|..|+.. .|.|=.-..|- ++|-.|.-..+..+.
T Consensus 2 ~~~~C~~C~~~~T~~WR~g~~g~~~LCnaCgl~~~k~~~ 40 (52)
T smart00401 2 SGRSCSNCGTTETPLWRRGPSGNKTLCNACGLYYKKHGG 40 (52)
T ss_pred CCCCcCCCCCCCCCccccCCCCCCcEeecccHHHHHcCC
Confidence 46789999985 57898888886 999999887776554
No 181
>cd07171 NR_DBD_ER DNA-binding domain of estrogen receptors (ER) is composed of two C4-type zinc fingers. DNA-binding domain of estrogen receptors (ER) is composed of two C4-type zinc fingers. Each zinc finger contains a group of four Cys residues which coordinates a single zinc atom. ER interacts with specific DNA sites upstream of the target gene and modulates the rate of transcriptional initiation. Estrogen receptor is a transcription regulator that mediates the biological effects of hormone estrogen. The binding of estrogen to the receptor triggers the dimerization and the binding of the receptor dimer to estrogen response element, which is a palindromic inverted repeat: 5'GGTCAnnnTGACC-3', of target genes. Through ER, estrogen regulates development, reproduction and homeostasis. Like other members of the nuclear receptor (NR) superfamily of ligand-activated transcription factors, ER has a central well-conserved DNA binding domain (DBD), a variable N-terminal domain, a non-conserv
Probab=62.70 E-value=5.9 Score=28.95 Aligned_cols=31 Identities=23% Similarity=0.575 Sum_probs=25.5
Q ss_pred CCCCCcCCCCCCCCeEEecccceechhhHHHHhh
Q 021294 28 GNRHCADCGSPDPKWVSLSTGVFICIKCSGIHRS 61 (314)
Q Consensus 28 ~N~~C~dC~~~~p~w~s~~~g~~~C~~C~~~Hr~ 61 (314)
+|..|.=||.+. ....||++.|..|++..|-
T Consensus 2 ~~~~C~VCg~~~---~g~hyGv~sC~aC~~FFRR 32 (82)
T cd07171 2 DTHFCAVCSDYA---SGYHYGVWSCEGCKAFFKR 32 (82)
T ss_pred CCCCCeecCCcC---cceEECceeehhhHHhHHH
Confidence 467899999755 3578999999999998864
No 182
>TIGR02419 C4_traR_proteo phage/conjugal plasmid C-4 type zinc finger protein, TraR family. Members of this family are putative C4-type zinc finger proteins found almost exclusively in prophage regions, actual phage, or conjugal transfer regions of the Proteobactia. This small protein (about 70 amino acids) appears homologous to but is smaller than DksA (DnaK suppressor protein), found to be critical for regulating transcription of ribosomal RNA.
Probab=61.73 E-value=4.8 Score=27.85 Aligned_cols=34 Identities=41% Similarity=0.883 Sum_probs=23.9
Q ss_pred cCCCCCCCcCCCCCCC--CeEEecccceechhhHHHH
Q 021294 25 RQPGNRHCADCGSPDP--KWVSLSTGVFICIKCSGIH 59 (314)
Q Consensus 25 ~~~~N~~C~dC~~~~p--~w~s~~~g~~~C~~C~~~H 59 (314)
..++...|.|||.+=| .+..+ -|+..|+.|...+
T Consensus 27 ~~~s~g~C~~Cg~~Ip~~Rl~a~-p~~~~Cv~Cq~~~ 62 (63)
T TIGR02419 27 IGPSLRECEDCGEPIPEARREAL-PGVTRCVSCQEIL 62 (63)
T ss_pred cCCCCCeeccCCCcChHHHHhhc-CCcCCcHHHHhhc
Confidence 3466789999998754 33333 3788899998754
No 183
>PF01258 zf-dskA_traR: Prokaryotic dksA/traR C4-type zinc finger; InterPro: IPR000962 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents domains identified in zinc finger-containing members of the DksA/TraR family. DksA is a critical component of the rRNA transcription initiation machinery that potentiates the regulation of rRNA promoters by ppGpp and the initiating NTP. In delta-dksA mutants, rRNA promoters are unresponsive to changes in amino acid availability, growth rate, or growth phase. In vitro, DksA binds to RNAP, reduces open complex lifetime, inhibits rRNA promoter activity, and amplifies effects of ppGpp and the initiating NTP on rRNA transcription [, ]. The dksA gene product suppresses the temperature-sensitive growth and filamentation of a dnaK deletion mutant of Escherichia coli. Gene knockout [] and deletion [] experiments have shown the gene to be non-essential, mutations causing a mild sensitivity to UV light, but not affecting DNA recombination []. In Pseudomonas aeruginosa, dksA is a novel regulator involved in the post-transcriptional control of extracellular virulence factor production []. The proteins contain a C-terminal region thought to fold into a 4-cysteine zinc finger. Other proteins found to contain a similar zinc finger domain include: the traR gene products encoded on the E. coli F and R100 plasmids [, ] the traR gene products encoded on Salmonella spp. plasmids pED208 and pSLT the dnaK suppressor hypothetical proteins from bacteria and bacteriophage FHL4, LIM proteins from Homo sapiens (Human) and Mus musculus (Mouse) [] More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 2GVI_A 2KQ9_A 2KGO_A 1TJL_I.
Probab=61.56 E-value=6.3 Score=23.76 Aligned_cols=30 Identities=30% Similarity=0.813 Sum_probs=17.0
Q ss_pred CCCcCCCCCCC-CeEEecccceechhhHHHH
Q 021294 30 RHCADCGSPDP-KWVSLSTGVFICIKCSGIH 59 (314)
Q Consensus 30 ~~C~dC~~~~p-~w~s~~~g~~~C~~C~~~H 59 (314)
..|.+||.+=| .=.-+--|..+|..|+..|
T Consensus 4 g~C~~CGe~I~~~Rl~~~p~~~~C~~C~~~~ 34 (36)
T PF01258_consen 4 GICEDCGEPIPEERLVAVPGATLCVECQERR 34 (36)
T ss_dssp SB-TTTSSBEEHHHHHHCTTECS-HHHHHHH
T ss_pred CCccccCChHHHHHHHhCCCcEECHHHhCcc
Confidence 35999997532 1111123788899998865
No 184
>COG1997 RPL43A Ribosomal protein L37AE/L43A [Translation, ribosomal structure and biogenesis]
Probab=61.56 E-value=10 Score=27.89 Aligned_cols=40 Identities=28% Similarity=0.623 Sum_probs=30.1
Q ss_pred HHHHHHHHHc-CCCCCCCcCCCCCCCCeEEecccceechhhHH
Q 021294 16 PRARLENLLR-QPGNRHCADCGSPDPKWVSLSTGVFICIKCSG 57 (314)
Q Consensus 16 ~~~~~~~l~~-~~~N~~C~dC~~~~p~w~s~~~g~~~C~~C~~ 57 (314)
.++..++|.. +.+--.|-.|+.+ .---+..||+.|..|--
T Consensus 21 ~Rrrv~~ie~~~~~~~~Cp~C~~~--~VkR~a~GIW~C~kCg~ 61 (89)
T COG1997 21 LRRRVKEIEAQQRAKHVCPFCGRT--TVKRIATGIWKCRKCGA 61 (89)
T ss_pred HHHHHHHHHHHHhcCCcCCCCCCc--ceeeeccCeEEcCCCCC
Confidence 4556666553 5677899999988 55677899999999943
No 185
>cd06968 NR_DBD_ROR DNA-binding domain of Retinoid-related orphan receptors (RORs) is composed of two C4-type zinc fingers. DNA-binding domain of Retinoid-related orphan receptors (RORs) is composed of two C4-type zinc fingers. Each zinc finger contains a group of four Cys residues which coordinates a single zinc atom. ROR interacts with specific DNA sites upstream of the target gene and modulates the rate of transcriptional initiation. RORS are key regulators of many physiological processes during embryonic development. RORs bind as monomers to specific ROR response elements (ROREs) consisting of the consensus core motif AGGTCA preceded by a 5-bp A/T-rich sequence. There are three subtypes of retinoid-related orphan receptors (RORs), alpha, beta, and gamma, which differ only in N-terminal sequence and are distributed in distinct tissues. RORalpha plays a key role in the development of the cerebellum particularly in the regulation of the maturation and survival of Purkinje cells. RORbe
Probab=57.35 E-value=8.3 Score=29.04 Aligned_cols=31 Identities=29% Similarity=0.657 Sum_probs=25.5
Q ss_pred CCCCCcCCCCCCCCeEEecccceechhhHHHHhh
Q 021294 28 GNRHCADCGSPDPKWVSLSTGVFICIKCSGIHRS 61 (314)
Q Consensus 28 ~N~~C~dC~~~~p~w~s~~~g~~~C~~C~~~Hr~ 61 (314)
.+..|.=||.+. ....||++.|..|.+..|-
T Consensus 4 ~~~~C~VCg~~~---~g~hyGv~sC~aC~~FFRR 34 (95)
T cd06968 4 EVIPCKICGDKS---SGIHYGVITCEGCKGFFRR 34 (95)
T ss_pred cccCCcccCCcC---cceEECceeehhhHHhhHH
Confidence 567899999765 3468999999999999874
No 186
>cd07173 NR_DBD_AR DNA-binding domain of androgen receptor (AR) is composed of two C4-type zinc fingers. DNA-binding domain of androgen receptor (AR) is composed of two C4-type zinc fingers. Each zinc finger contains a group of four Cys residues which co-ordinates a single zinc atom. To regulate gene expression, AR interacts with a palindrome of the core sequence 5'-TGTTCT-3' with a 3-bp spacer. It also binds to the direct repeat 5'-TGTTCT-3' hexamer in some androgen controlled genes. AR is activated by the androgenic hormones, testosterone or dihydrotestosterone, which are responsible for primary and for secondary male characteristics, respectively. The primary mechanism of action of ARs is by direct regulation of gene transcription. The binding of androgen results in a conformational change in the androgen receptor which causes its transport from the cytosol into the cell nucleus, and dimerization. The receptor dimer binds to a hormone response element of AR regulated genes and modul
Probab=55.81 E-value=9.9 Score=27.77 Aligned_cols=31 Identities=19% Similarity=0.537 Sum_probs=25.2
Q ss_pred CCCCCcCCCCCCCCeEEecccceechhhHHHHhh
Q 021294 28 GNRHCADCGSPDPKWVSLSTGVFICIKCSGIHRS 61 (314)
Q Consensus 28 ~N~~C~dC~~~~p~w~s~~~g~~~C~~C~~~Hr~ 61 (314)
..+.|.=||.+.- ...||++.|..|.+..|-
T Consensus 2 ~~~~C~VCg~~a~---g~hyGv~sC~aCk~FFRR 32 (82)
T cd07173 2 PQKTCLICGDEAS---GCHYGALTCGSCKVFFKR 32 (82)
T ss_pred CCCCCeecCCcCc---ceEECcchhhhHHHHHHH
Confidence 4567999997653 568999999999998864
No 187
>PF11618 DUF3250: Protein of unknown function (DUF3250); InterPro: IPR021656 This family of proteins represents a protein with unknown function. It may be the C2 domain from KIAA1005 however this cannot be confirmed. ; PDB: 2YRB_A.
Probab=55.15 E-value=24 Score=27.16 Aligned_cols=67 Identities=15% Similarity=0.302 Sum_probs=34.2
Q ss_pred EEEEEE-CCeEeeeeeecCCCCCcccceeEEEecC--------CCCcEEEEEEEcCCCCCCceeEEEEEeCccccccc
Q 021294 229 YVILAL-GHQTVKTRVIKSNLNPVWNESLMLSIPE--------NIPPLKVLVYDKDTFTTDDFMGDAEIDIQPLVTAA 297 (314)
Q Consensus 229 yv~v~l-~~~~~kT~~~~~tlnP~w~e~~~f~v~~--------~~~~L~i~v~d~d~~~~dd~iG~~~v~l~~l~~~~ 297 (314)
||.+.+ +-....|.++. +.+|.++-+-.|.+.. ....+.|+++..-. .....+|.+.+++..++...
T Consensus 2 Fct~dFydfEtq~Tpvv~-G~~p~y~fts~y~V~~d~~fl~YLq~~~~~lELhqa~g-~d~~tla~~~i~l~~ll~~~ 77 (107)
T PF11618_consen 2 FCTYDFYDFETQTTPVVR-GLNPFYDFTSQYKVTMDDLFLHYLQTGSLTLELHQALG-SDFETLAAGQISLRPLLESN 77 (107)
T ss_dssp EEEE-STT---EE---EE-SSS----EEEEEEE--SHHHHHHHHH--EEEEEEEE-S-S-EEEEEEEEE--SHHHH--
T ss_pred EEEEEeeceeeeccccee-CCCccceeEEEEEEEcCHHHHHHhhcCCEEEEEEeecc-CCeEEEEEEEeechhhhcCC
Confidence 444444 34556677765 7899999888887743 24679999988553 23678999999999988443
No 188
>PF07162 B9-C2: Ciliary basal body-associated, B9 protein; InterPro: IPR010796 Proteins in this entry include the MSK1 protein (Q9NXB0 from SWISSPROT) and other known or predicted flagellar basal body proteome components [] or cilia-containing species. Although the function is unknown, a cilia-specific role has been suggested for the poorly characterised B9 domain [, , ]. Mutations in MSK1 have been shown to cause Meckel syndrome type 1, a severe foetal development disorder that has been reported in most populations.
Probab=54.74 E-value=1.2e+02 Score=25.06 Aligned_cols=79 Identities=20% Similarity=0.286 Sum_probs=50.6
Q ss_pred EEEEEEeeecCCCCCCCCCCcEEEEEE----------CCe-EeeeeeecCC-----CCCcccceeEEEecC----CCCcE
Q 021294 208 IKVNVVKGTNLAVRDVMTSDPYVILAL----------GHQ-TVKTRVIKSN-----LNPVWNESLMLSIPE----NIPPL 267 (314)
Q Consensus 208 L~V~v~~a~~L~~~d~~~~dPyv~v~l----------~~~-~~kT~~~~~t-----lnP~w~e~~~f~v~~----~~~~L 267 (314)
+.=.|..|.+.. ..+-||+..+ +.. ...|.+.... -.-.|+..|.+.+.. .-..|
T Consensus 4 v~G~I~~a~~f~-----~~~l~~~y~~~~g~~W~~~~g~~~~G~Tq~~~~~~~~~~~~~~f~~P~d~~~~~~~~~gwP~L 78 (168)
T PF07162_consen 4 VIGEIESAEGFE-----EDNLYCRYQLVHGPDWKLISGLSLEGQTQISKSSSYGNDDVAVFNHPFDLHFKSTNPQGWPQL 78 (168)
T ss_pred EEEEEEEEECCC-----CCCEEEEEEEEeCCCeEECCCCcceEEcceeecCcccCCCceEEeccEEEEEEeCCCCCCceE
Confidence 344566776543 2356777665 233 4566655432 235688877776532 22679
Q ss_pred EEEEEEcCCCCCCceeEEEEEeCc
Q 021294 268 KVLVYDKDTFTTDDFMGDAEIDIQ 291 (314)
Q Consensus 268 ~i~v~d~d~~~~dd~iG~~~v~l~ 291 (314)
.|+||..|..+++...|-..+.|-
T Consensus 79 ~l~V~~~D~~gr~~~~GYG~~~lP 102 (168)
T PF07162_consen 79 VLQVYSLDSWGRDRVEGYGFCHLP 102 (168)
T ss_pred EEEEEEEcccCCeEEeEEeEEEeC
Confidence 999999999999988877666553
No 189
>cd07170 NR_DBD_ERR DNA-binding domain of estrogen related receptors (ERR) is composed of two C4-type zinc fingers. DNA-binding domain of estrogen related receptors (ERRs) is composed of two C4-type zinc fingers. Each zinc finger contains a group of four Cys residues which coordinates a single zinc atom. ERR interacts with the palindromic inverted repeat, 5'GGTCAnnnTGACC-3', upstream of the target gene and modulates the rate of transcriptional initiation. The estrogen receptor-related receptors (ERRs) are transcriptional regulators, which are closely related to the estrogen receptor (ER) family. Although ERRs lack the ability to bind to estrogen and are so-called orphan receptors, they share target genes, co-regulators and promoters with the estrogen receptor (ER) family. By targeting the same set of genes, ERRs seem to interfere with the classic ER-mediated estrogen response in various ways. Like other members of the nuclear receptor (NR) superfamily of ligand-activated transcription
Probab=53.76 E-value=9.5 Score=28.85 Aligned_cols=30 Identities=27% Similarity=0.614 Sum_probs=24.2
Q ss_pred CCCCcCCCCCCCCeEEecccceechhhHHHHhh
Q 021294 29 NRHCADCGSPDPKWVSLSTGVFICIKCSGIHRS 61 (314)
Q Consensus 29 N~~C~dC~~~~p~w~s~~~g~~~C~~C~~~Hr~ 61 (314)
+..|.=||.+.- ...||++.|..|.++.|-
T Consensus 4 ~~~C~VCg~~a~---g~hyGv~sC~aCk~FFRR 33 (97)
T cd07170 4 KRLCLVCGDIAS---GYHYGVASCEACKAFFKR 33 (97)
T ss_pred CCCCeecCCcCc---ceEECceeehhhhHHHHH
Confidence 356999997653 458999999999998874
No 190
>KOG3362 consensus Predicted BBOX Zn-finger protein [General function prediction only]
Probab=50.40 E-value=5.9 Score=31.95 Aligned_cols=35 Identities=31% Similarity=0.729 Sum_probs=27.9
Q ss_pred CCCCCCCcCCCCCCCCeEEecccceech-hhHHHHhh
Q 021294 26 QPGNRHCADCGSPDPKWVSLSTGVFICI-KCSGIHRS 61 (314)
Q Consensus 26 ~~~N~~C~dC~~~~p~w~s~~~g~~~C~-~C~~~Hr~ 61 (314)
+|.-+.|+-|| -+..|.+++-|.-.|. .|-++|.+
T Consensus 115 KP~r~fCaVCG-~~S~ysC~~CG~kyCsv~C~~~Hne 150 (156)
T KOG3362|consen 115 KPLRKFCAVCG-YDSKYSCVNCGTKYCSVRCLKTHNE 150 (156)
T ss_pred CCcchhhhhcC-CCchhHHHhcCCceeechhhhhccc
Confidence 35568999999 6667999999988875 68888865
No 191
>PHA00080 DksA-like zinc finger domain containing protein
Probab=49.26 E-value=13 Score=26.46 Aligned_cols=34 Identities=32% Similarity=0.891 Sum_probs=23.9
Q ss_pred CCCCCCCcCCCCCCC--CeEEecccceechhhHHHHh
Q 021294 26 QPGNRHCADCGSPDP--KWVSLSTGVFICIKCSGIHR 60 (314)
Q Consensus 26 ~~~N~~C~dC~~~~p--~w~s~~~g~~~C~~C~~~Hr 60 (314)
.++...|.|||.+=| .+..+. |+..|+.|...+-
T Consensus 28 ~~~~~~C~~Cg~~Ip~~Rl~a~P-~~~~Cv~Cq~~~E 63 (72)
T PHA00080 28 APSATHCEECGDPIPEARREAVP-GCRTCVSCQEILE 63 (72)
T ss_pred CCCCCEecCCCCcCcHHHHHhCC-CccCcHHHHHHHH
Confidence 345678999998644 444333 5677999998764
No 192
>cd07160 NR_DBD_LXR DNA-binding domain of Liver X receptors (LXRs) family is composed of two C4-type zinc fingers. DNA-binding domain of Liver X receptors (LXRs) family is composed of two C4-type zinc fingers. Each zinc finger contains a group of four Cys residues which co-ordinates a single zinc atom. LXR interacts with specific DNA sites upstream of the target gene and modulates the rate of transcriptional initiation. LXR operates as cholesterol sensor which protects cells from cholesterol overload by stimulating reverse cholesterol transport from peripheral tissues to the liver and its excretion in the bile. Oxidized cholesterol derivatives or oxysterols were identified as specific ligands for LXRs. LXR functions as a heterodimer with the retinoid X receptor (RXR) which may be activated by either LXR agonist or 9-cis retinoic acid, a specific RXR ligand. The LXR/RXR complex binds to a liver X receptor response element (LXRE) in the promoter region of target genes. The ideal LXRE seq
Probab=49.19 E-value=13 Score=28.39 Aligned_cols=31 Identities=32% Similarity=0.776 Sum_probs=25.5
Q ss_pred CCCCCcCCCCCCCCeEEecccceechhhHHHHhh
Q 021294 28 GNRHCADCGSPDPKWVSLSTGVFICIKCSGIHRS 61 (314)
Q Consensus 28 ~N~~C~dC~~~~p~w~s~~~g~~~C~~C~~~Hr~ 61 (314)
.+..|.=||.+.- ...||+..|..|.+..|-
T Consensus 17 ~~~~C~VCg~~a~---g~hyGv~sC~aCk~FFRR 47 (101)
T cd07160 17 GNEVCSVCGDKAS---GFHYNVLSCEGCKGFFRR 47 (101)
T ss_pred CCCCCeecCCcCc---ceEECcceehhhhhhhhh
Confidence 4678999997554 568999999999998864
No 193
>PRK00420 hypothetical protein; Validated
Probab=46.82 E-value=15 Score=28.59 Aligned_cols=46 Identities=24% Similarity=0.387 Sum_probs=32.6
Q ss_pred CCCCCcHHHHHHHHHc--CCCCCCCcCCCCCCCCeEEecccceechhhHHH
Q 021294 10 PKNVSGPRARLENLLR--QPGNRHCADCGSPDPKWVSLSTGVFICIKCSGI 58 (314)
Q Consensus 10 ~~~~~~~~~~~~~l~~--~~~N~~C~dC~~~~p~w~s~~~g~~~C~~C~~~ 58 (314)
|++++..+++-+.|++ .--+..|..||.+-. -.+-|-..|..|..+
T Consensus 2 ~~~~~~~k~~a~~Ll~Ga~ml~~~CP~Cg~pLf---~lk~g~~~Cp~Cg~~ 49 (112)
T PRK00420 2 MESEDIVKKAAELLLKGAKMLSKHCPVCGLPLF---ELKDGEVVCPVHGKV 49 (112)
T ss_pred CccHHHHHHHHHHHHhHHHHccCCCCCCCCcce---ecCCCceECCCCCCe
Confidence 4566666777777776 346799999997643 236789999999653
No 194
>PF10764 Gin: Inhibitor of sigma-G Gin; InterPro: IPR019700 Gin allows sigma-F to delay late forespore transcription by preventing sigma-G to take over before the cell has reached a critical stage of development. Gin is also known as CsfB [].
Probab=45.89 E-value=14 Score=23.84 Aligned_cols=26 Identities=31% Similarity=0.747 Sum_probs=18.6
Q ss_pred CCcCCCCCCCCeEEecccceechhhHH
Q 021294 31 HCADCGSPDPKWVSLSTGVFICIKCSG 57 (314)
Q Consensus 31 ~C~dC~~~~p~w~s~~~g~~~C~~C~~ 57 (314)
.|.=|+...+.=+- =+|.|+|..|-.
T Consensus 1 ~CiiC~~~~~~GI~-I~~~fIC~~CE~ 26 (46)
T PF10764_consen 1 KCIICGKEKEEGIH-IYGKFICSDCEK 26 (46)
T ss_pred CeEeCCCcCCCCEE-EECeEehHHHHH
Confidence 47778887776232 368999999954
No 195
>cd07169 NR_DBD_GCNF_like DNA-binding domain of Germ cell nuclear factor (GCNF) F1 is composed of two C4-type zinc fingers. DNA-binding domain of Germ cell nuclear factor (GCNF) F1 is composed of two C4-type zinc fingers. Each zinc finger contains a group of four Cys residues which coordinates a single zinc atom. This domain interacts with specific DNA sites upstream of the target gene and modulates the rate of transcriptional initiation. GCNF is a transcription factor expressed in post-meiotic stages of developing male germ cells. In vitro, GCNF has the ability to bind to direct repeat elements of 5'-AGGTCA.AGGTCA-3', as well as to an extended half-site sequence 5'-TCA.AGGTCA-3'. Like other members of the nuclear receptor (NR) superfamily of ligand-activated transcription factors, GCNF has a central well conserved DNA-binding domain (DBD), a variable N-terminal domain, a flexible hinge and a C-terminal ligand binding domain (LBD).
Probab=45.86 E-value=15 Score=27.26 Aligned_cols=32 Identities=28% Similarity=0.719 Sum_probs=25.8
Q ss_pred CCCCCCcCCCCCCCCeEEecccceechhhHHHHhh
Q 021294 27 PGNRHCADCGSPDPKWVSLSTGVFICIKCSGIHRS 61 (314)
Q Consensus 27 ~~N~~C~dC~~~~p~w~s~~~g~~~C~~C~~~Hr~ 61 (314)
.++..|.=||.+. ....||+..|..|.+..|-
T Consensus 4 ~~~~~C~VCg~~a---~g~hyGv~sC~aCk~FFRR 35 (90)
T cd07169 4 AEQRTCLICGDRA---TGLHYGIISCEGCKGFFKR 35 (90)
T ss_pred ccCCCCeecCCcC---cceEECcceehhhHHHHHH
Confidence 4567799999755 4568999999999998864
No 196
>COG2174 RPL34A Ribosomal protein L34E [Translation, ribosomal structure and biogenesis]
Probab=45.81 E-value=17 Score=26.94 Aligned_cols=34 Identities=32% Similarity=0.754 Sum_probs=23.8
Q ss_pred HcCCCCCCCcCCCCC-------CC----------CeEEecccceechhhHH
Q 021294 24 LRQPGNRHCADCGSP-------DP----------KWVSLSTGVFICIKCSG 57 (314)
Q Consensus 24 ~~~~~N~~C~dC~~~-------~p----------~w~s~~~g~~~C~~C~~ 57 (314)
.+.++--.|++||.+ -| .=++=.||-.+|..|..
T Consensus 29 kK~~~~p~C~~cg~pL~Gi~r~RP~e~~r~skt~krp~RpYGG~lc~~c~~ 79 (93)
T COG2174 29 KKKPTIPKCAICGRPLGGIPRGRPREFRRLSKTKKRPERPYGGYLCANCVR 79 (93)
T ss_pred eccCCCCcccccCCccCCccCCCcHHHHhccccccCcCCCcCceecHHHHH
Confidence 356777899999965 11 12244689999999964
No 197
>cd07162 NR_DBD_PXR DNA-binding domain of pregnane X receptor (PXRs) is composed of two C4-type zinc fingers. DNA-binding domain (DBD)of pregnane X receptor (PXR) is composed of two C4-type zinc fingers. Each zinc finger contains a group of four Cys residues which co-ordinates a single zinc atom. PXR DBD interacts with the PXR response element, a perfect repeat of two AGTTCA motifs with a 4 bp spacer upstream of the target gene, and modulates the rate of transcriptional initiation. The pregnane X receptor (PXR) is a ligand-regulated transcription factor that responds to a diverse array of chemically distinct ligands, including many endogenous compounds and clinical drugs. PXR functions as a heterodimer with retinoic X receptor-alpha (RXRa) and binds to a variety of promoter regions of a diverse set of target genes involved in the metabolism, transport, and ultimately, elimination of these molecules from the body. Like other nuclear receptors, PXR has a central well conserved DNA-binding
Probab=45.79 E-value=18 Score=26.68 Aligned_cols=28 Identities=25% Similarity=0.644 Sum_probs=21.9
Q ss_pred CCcCCCCCCCCeEEecccceechhhHHHHhh
Q 021294 31 HCADCGSPDPKWVSLSTGVFICIKCSGIHRS 61 (314)
Q Consensus 31 ~C~dC~~~~p~w~s~~~g~~~C~~C~~~Hr~ 61 (314)
.|.=||.+.. ...||+..|..|++..|-
T Consensus 1 ~C~VCg~~~~---g~hygv~sC~aC~~FFRR 28 (87)
T cd07162 1 ICRVCGDRAT---GYHFNAMTCEGCKGFFRR 28 (87)
T ss_pred CCcccCCcCc---ceEECcceehhhHHHHHh
Confidence 3777887654 348999999999998764
No 198
>cd07161 NR_DBD_EcR DNA-binding domain of Ecdysone receptor (ECR) family is composed of two C4-type zinc fingers. DNA-binding domain of Ecdysone receptor (EcR) family is composed of two C4-type zinc fingers. Each zinc finger contains a group of four Cys residues which co-ordinates a single zinc atom. EcR interacts with highly degenerate pseudo-palindromic response elements, resembling inverted repeats of 5'-AGGTCA-3' separated by 1 bp, upstream of the target gene and modulates the rate of transcriptional initiation. EcR is present only in invertebrates and regulates the expression of a large number of genes during development and reproduction. EcR functions as a heterodimer by partnering with ultraspiracle protein (USP), the ortholog of the vertebrate retinoid X receptor (RXR). The natural ligands of EcR are ecdysteroids, the endogenous steroidal hormones found in invertebrates. Like other members of the nuclear receptor (NR) superfamily of ligand-activated transcription factors, EcRs h
Probab=45.32 E-value=18 Score=26.93 Aligned_cols=29 Identities=24% Similarity=0.635 Sum_probs=23.1
Q ss_pred CCCcCCCCCCCCeEEecccceechhhHHHHhh
Q 021294 30 RHCADCGSPDPKWVSLSTGVFICIKCSGIHRS 61 (314)
Q Consensus 30 ~~C~dC~~~~p~w~s~~~g~~~C~~C~~~Hr~ 61 (314)
..|.=||.+.- ...||++.|..|++..|-
T Consensus 2 ~~C~VCg~~a~---g~hyGv~sC~aCk~FFRR 30 (91)
T cd07161 2 ELCLVCGDRAS---GYHYNALTCEGCKGFFRR 30 (91)
T ss_pred CCCeeCCCcCc---ceEECceeehhhHHHHHH
Confidence 35888987654 458999999999998863
No 199
>cd06966 NR_DBD_CAR DNA-binding domain of constitutive androstane receptor (CAR) is composed of two C4-type zinc fingers. DNA-binding domain (DBD) of constitutive androstane receptor (CAR) is composed of two C4-type zinc fingers. Each zinc finger contains a group of four Cys residues which co-ordinates a single zinc atom. CAR DBD interacts with CAR response element, a perfect repeat of two AGTTCA motifs with a 4 bp spacer upstream of the target gene, and modulates the rate of transcriptional initiation. The constitutive androstane receptor (CAR) is a ligand-regulated transcription factor that responds to a diverse array of chemically distinct ligands, including many endogenous compounds and clinical drugs. It functions as a heterodimer with RXR. The CAR/RXR heterodimer binds many common response elements in the promoter regions of a diverse set of target genes involved in the metabolism, transport, and ultimately, elimination of these molecules from the body. CAR is a closest mammalian
Probab=43.91 E-value=9.7 Score=28.58 Aligned_cols=29 Identities=21% Similarity=0.591 Sum_probs=22.8
Q ss_pred CCCcCCCCCCCCeEEecccceechhhHHHHhh
Q 021294 30 RHCADCGSPDPKWVSLSTGVFICIKCSGIHRS 61 (314)
Q Consensus 30 ~~C~dC~~~~p~w~s~~~g~~~C~~C~~~Hr~ 61 (314)
+.|.=||.+.. ...||++.|..|++..|-
T Consensus 1 ~~C~VCg~~a~---g~hyGv~sC~aC~~FFRR 29 (94)
T cd06966 1 KICGVCGDKAL---GYNFNAITCESCKAFFRR 29 (94)
T ss_pred CCCeeCCCcCc---ceEECcceeeeehheehh
Confidence 35888887543 458999999999998764
No 200
>cd07165 NR_DBD_DmE78_like DNA-binding domain of Drosophila ecdysone-induced protein 78 (E78) like is composed of two C4-type zinc fingers. DNA-binding domain of proteins similar to Drosophila ecdysone-induced protein 78 (E78) is composed of two C4-type zinc fingers. Each zinc finger contains a group of four Cys residues which coordinates a single zinc atom. E78 interacts with specific DNA sites upstream of the target gene and modulates the rate of transcriptional initiation. Drosophila ecdysone-induced protein 78 (E78) is a transcription factor belonging to the nuclear receptor superfamily. E78 is a product of the ecdysone-inducible gene found in an early late puff locus at position 78C during the onset of Drosophila metamorphosis. An E78 orthologue from the Platyhelminth Schistosoma mansoni (SmE78) has also been identified. It is the first E78 orthologue known outside of the molting animals--the Ecdysozoa. The SmE78 may be involved in transduction of an ecdysone signal in S. mansoni,
Probab=43.23 E-value=17 Score=26.40 Aligned_cols=27 Identities=33% Similarity=0.764 Sum_probs=20.8
Q ss_pred CcCCCCCCCCeEEecccceechhhHHHHhh
Q 021294 32 CADCGSPDPKWVSLSTGVFICIKCSGIHRS 61 (314)
Q Consensus 32 C~dC~~~~p~w~s~~~g~~~C~~C~~~Hr~ 61 (314)
|.=||.+.- ...||+..|..|.+..|-
T Consensus 1 C~VCg~~~~---g~hyG~~sC~aC~~FFRR 27 (81)
T cd07165 1 CKVCGDKAS---GYHYGVTSCEGCKGFFRR 27 (81)
T ss_pred CCccCccCc---ceEECchhhhhHHHHHHh
Confidence 555776543 458999999999998874
No 201
>PF14471 DUF4428: Domain of unknown function (DUF4428)
Probab=42.71 E-value=10 Score=24.98 Aligned_cols=30 Identities=27% Similarity=0.620 Sum_probs=19.8
Q ss_pred CCcCCCCCCCCeE--EecccceechhhHHHHhh
Q 021294 31 HCADCGSPDPKWV--SLSTGVFICIKCSGIHRS 61 (314)
Q Consensus 31 ~C~dC~~~~p~w~--s~~~g~~~C~~C~~~Hr~ 61 (314)
.|+=||..-.-.- -+.=| +||..|..--..
T Consensus 1 ~C~iCg~kigl~~~~k~~DG-~iC~~C~~Kl~~ 32 (51)
T PF14471_consen 1 KCAICGKKIGLFKRFKIKDG-YICKDCLKKLSG 32 (51)
T ss_pred CCCccccccccccceeccCc-cchHHHHHHhcC
Confidence 4888887644333 34557 899999965433
No 202
>PF07282 OrfB_Zn_ribbon: Putative transposase DNA-binding domain; InterPro: IPR010095 This entry represents a region of a sequence similarity between a family of putative transposases of Thermoanaerobacter tengcongensis, smaller related proteins from Bacillus anthracis, putative transposes described by IPR001959 from INTERPRO, and other proteins. More information about these proteins can be found at Protein of the Month: Transposase [].
Probab=42.03 E-value=14 Score=25.55 Aligned_cols=27 Identities=33% Similarity=0.783 Sum_probs=22.2
Q ss_pred CCCCCcCCCCCCCCeEEecccceechhhH
Q 021294 28 GNRHCADCGSPDPKWVSLSTGVFICIKCS 56 (314)
Q Consensus 28 ~N~~C~dC~~~~p~w~s~~~g~~~C~~C~ 56 (314)
.-+.|..||..... ..+-.+|.|..|.
T Consensus 27 TSq~C~~CG~~~~~--~~~~r~~~C~~Cg 53 (69)
T PF07282_consen 27 TSQTCPRCGHRNKK--RRSGRVFTCPNCG 53 (69)
T ss_pred CccCccCccccccc--ccccceEEcCCCC
Confidence 35889999998877 6777899999983
No 203
>PTZ00255 60S ribosomal protein L37a; Provisional
Probab=41.75 E-value=29 Score=25.85 Aligned_cols=40 Identities=23% Similarity=0.532 Sum_probs=30.0
Q ss_pred cHHHHHHHHH-cCCCCCCCcCCCCCCCCeEEecccceechhhH
Q 021294 15 GPRARLENLL-RQPGNRHCADCGSPDPKWVSLSTGVFICIKCS 56 (314)
Q Consensus 15 ~~~~~~~~l~-~~~~N~~C~dC~~~~p~w~s~~~g~~~C~~C~ 56 (314)
..++.+++|- .+..--.|.-||...-.... .||+-|..|.
T Consensus 21 slRK~v~kie~~q~a~y~CpfCgk~~vkR~a--~GIW~C~~C~ 61 (90)
T PTZ00255 21 SLRKQIKKIEISQHAKYFCPFCGKHAVKRQA--VGIWRCKGCK 61 (90)
T ss_pred HHHHHHHHHHHHHhCCccCCCCCCCceeeee--eEEEEcCCCC
Confidence 3566777765 46788899999977655554 4999999994
No 204
>cd07172 NR_DBD_GR_PR DNA-binding domain of glucocorticoid receptor (GR) is composed of two C4-type zinc fingers. DNA-binding domains of glucocorticoid receptor (GR) and progesterone receptor (PR) are composed of two C4-type zinc fingers. Each zinc finger contains a group of four Cys residues which co-ordinate a single zinc atom. The DBD from both receptors interact with the same hormone response element (HRE), which is an imperfect palindrome GGTACAnnnTGTTCT, upstream of target genes and modulates the rate of transcriptional initiation. GR is a transcriptional regulator that mediates the biological effects of glucocorticoids and PR regulates genes controlled by progesterone. GR is expressed in almost every cell in the body and regulates genes controlling a wide variety of processes including the development, metabolism, and immune response of the organism. PR functions in a variety of biological processes including development of the mammary gland, regulating cell cycle progression, p
Probab=41.66 E-value=22 Score=25.64 Aligned_cols=29 Identities=21% Similarity=0.540 Sum_probs=23.3
Q ss_pred CCCcCCCCCCCCeEEecccceechhhHHHHhh
Q 021294 30 RHCADCGSPDPKWVSLSTGVFICIKCSGIHRS 61 (314)
Q Consensus 30 ~~C~dC~~~~p~w~s~~~g~~~C~~C~~~Hr~ 61 (314)
..|.=||.+.- ...||+..|..|.+..|-
T Consensus 3 ~~C~VCg~~a~---g~hyGv~sC~aC~~FFRR 31 (78)
T cd07172 3 KICLVCSDEAS---GCHYGVLTCGSCKVFFKR 31 (78)
T ss_pred CCCeecCCcCc---ceEECceeehhhHHhHHH
Confidence 46888987543 468999999999998864
No 205
>KOG0694 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=41.02 E-value=7.2 Score=39.46 Aligned_cols=64 Identities=11% Similarity=0.083 Sum_probs=42.6
Q ss_pred CCCcEEEEEECCeE-eeeeeecCCCCCcccceeEEEecCCCCcEEEEEEEcCCCCCCceeEEEEEe
Q 021294 225 TSDPYVILALGHQT-VKTRVIKSNLNPVWNESLMLSIPENIPPLKVLVYDKDTFTTDDFMGDAEID 289 (314)
Q Consensus 225 ~~dPyv~v~l~~~~-~kT~~~~~tlnP~w~e~~~f~v~~~~~~L~i~v~d~d~~~~dd~iG~~~v~ 289 (314)
..+||+.+.+.... ..+.+.+.+..|.|+++|.+++.. ...+.|.|+.......+.+...+.+-
T Consensus 27 al~~y~~v~vk~~~~~~~~~~~~~~~~~~~~~F~~~v~~-~~~~~i~v~~~~~~~~~~~~a~~~~~ 91 (694)
T KOG0694|consen 27 ALQPYLAVELKVKQGAENMTKVELRIPELRETFHVEVVA-GGAKNIIVLLKSPDPKALSEAQLSLQ 91 (694)
T ss_pred hhhhhheeccceeecccccCCCCCCCchhhhheeeeeec-CCceEEEEEecCCcchhhHHHhHHHH
Confidence 35788888775433 345556778999999999999654 45788888887654444433333333
No 206
>cd07158 NR_DBD_Ppar_like The DNA-binding domain of peroxisome proliferator-activated receptors (PPAR) like nuclear receptor family. The DNA-binding domain of peroxisome proliferator-activated receptors (PPAR) like nuclear receptor family is composed of two C4-type zinc fingers. Each zinc finger contains a group of four Cys residues which co-ordinates a single zinc atom. These domains interact with specific DNA sites upstream of the target gene and modulate the rate of transcriptional initiation. This family includes three known types of nuclear receptors: peroxisome proliferator-activated receptors (PPAR), REV-ERB receptors and Drosophila ecdysone-induced protein 78 (E78). Like other members of the nuclear receptor (NR) superfamily of ligand-activated transcription factors, PPAR-like receptors have a central well conserved DNA binding domain (DBD), a variable N-terminal domain, a non-conserved hinge and a C-terminal ligand binding domain (LBD).
Probab=40.84 E-value=20 Score=25.39 Aligned_cols=27 Identities=33% Similarity=0.815 Sum_probs=20.6
Q ss_pred CcCCCCCCCCeEEecccceechhhHHHHhh
Q 021294 32 CADCGSPDPKWVSLSTGVFICIKCSGIHRS 61 (314)
Q Consensus 32 C~dC~~~~p~w~s~~~g~~~C~~C~~~Hr~ 61 (314)
|.=||.+.- ...||++.|..|.+..|-
T Consensus 1 C~VCg~~~~---g~hyGv~~C~aC~~FFRR 27 (73)
T cd07158 1 CKVCGDKAS---GFHYGVHSCEGCKGFFRR 27 (73)
T ss_pred CcccCccCc---ceEECcchhhHHHHHHhh
Confidence 455666544 368999999999999874
No 207
>cd06956 NR_DBD_RXR DNA-binding domain of retinoid X receptor (RXR) is composed of two C4-type zinc fingers. DNA-binding domain of retinoid X receptor (RXR) is composed of two C4-type zinc fingers. Each zinc finger contains a group of four Cys residues which co-ordinates a single zinc atom. RXR functions as a DNA binding partner by forming heterodimers with other nuclear receptors including CAR, FXR, LXR, PPAR, PXR, RAR, TR, and VDR. All RXR heterodimers preferentially bind response elements composed of direct repeats of two AGGTCA sites with a 1-5 bp spacer. RXRs can play different roles in these heterodimers. RXR acts either as a structural component of the heterodimer complex, required for DNA binding but not acting as a receptor, or as both a structural and a functional component of the heterodimer, allowing 9-cis RA to signal through the corresponding heterodimer. In addition, RXR can also form homodimers, functioning as a receptor for 9-cis RA, independently of other nuclear rec
Probab=40.66 E-value=26 Score=25.10 Aligned_cols=28 Identities=32% Similarity=0.768 Sum_probs=22.4
Q ss_pred CCcCCCCCCCCeEEecccceechhhHHHHhh
Q 021294 31 HCADCGSPDPKWVSLSTGVFICIKCSGIHRS 61 (314)
Q Consensus 31 ~C~dC~~~~p~w~s~~~g~~~C~~C~~~Hr~ 61 (314)
.|.=||.+.- ...||+..|..|++..|-
T Consensus 2 ~C~VC~~~~~---g~hygv~sC~aC~~FFRR 29 (77)
T cd06956 2 ICAICGDRAS---GKHYGVYSCEGCKGFFKR 29 (77)
T ss_pred CCcccCCcCc---ceEECceeehhHHHHHHH
Confidence 4777887554 468999999999998864
No 208
>PRK00423 tfb transcription initiation factor IIB; Reviewed
Probab=40.61 E-value=19 Score=33.29 Aligned_cols=33 Identities=21% Similarity=0.550 Sum_probs=23.2
Q ss_pred CCCCCCCcCCCCCCCCeEEecccceechhhHHHH
Q 021294 26 QPGNRHCADCGSPDPKWVSLSTGVFICIKCSGIH 59 (314)
Q Consensus 26 ~~~N~~C~dC~~~~p~w~s~~~g~~~C~~C~~~H 59 (314)
......|.+||.. +-=....-|-.||..|.-|-
T Consensus 8 ~~~~~~Cp~Cg~~-~iv~d~~~Ge~vC~~CG~Vl 40 (310)
T PRK00423 8 EEEKLVCPECGSD-KLIYDYERGEIVCADCGLVI 40 (310)
T ss_pred cccCCcCcCCCCC-CeeEECCCCeEeecccCCcc
Confidence 3455789999973 22224467999999997764
No 209
>PRK13715 conjugal transfer protein TraR; Provisional
Probab=39.63 E-value=12 Score=26.67 Aligned_cols=33 Identities=27% Similarity=0.735 Sum_probs=22.3
Q ss_pred CCCCcCCCCCCCC-eEEecccceechhhHHHHhh
Q 021294 29 NRHCADCGSPDPK-WVSLSTGVFICIKCSGIHRS 61 (314)
Q Consensus 29 N~~C~dC~~~~p~-w~s~~~g~~~C~~C~~~Hr~ 61 (314)
...|.|||.+=|. =.-.--|+..|+.|...+-.
T Consensus 34 ~~~C~~Cg~~Ip~~Rl~a~p~~~~Cv~Cq~~~E~ 67 (73)
T PRK13715 34 VYLCEACGNPIPEARRKIFPGVTLCVECQAYQER 67 (73)
T ss_pred cccHhhcCCcCCHHHHhcCCCcCCCHHHHHHHHH
Confidence 4589999987541 11122378899999887643
No 210
>cd07156 NR_DBD_VDR_like The DNA-binding domain of vitamin D receptors (VDR) like nuclear receptor family is composed of two C4-type zinc fingers. The DNA-binding domain of vitamin D receptors (VDR) like nuclear receptor family is composed of two C4-type zinc fingers. Each zinc finger contains a group of four Cys residues which co-ordinates a single zinc atom. This domain interacts with specific DNA site upstream of the target gene and modulates the rate of transcriptional initiation. This family includes three types of nuclear receptors: vitamin D receptors (VDR), constitutive androstane receptor (CAR) and pregnane X receptor (PXR). VDR regulates calcium metabolism, cellular proliferation and differentiation. PXR and CAR function as sensors of toxic byproducts of cell metabolism and of exogenous chemicals, to facilitate their elimination. The DNA binding activity is regulated by their corresponding ligands. VDR is activated by Vitamin D; CAR and PXR respond to a diverse array of chemi
Probab=39.40 E-value=20 Score=25.31 Aligned_cols=27 Identities=26% Similarity=0.709 Sum_probs=20.4
Q ss_pred CcCCCCCCCCeEEecccceechhhHHHHhh
Q 021294 32 CADCGSPDPKWVSLSTGVFICIKCSGIHRS 61 (314)
Q Consensus 32 C~dC~~~~p~w~s~~~g~~~C~~C~~~Hr~ 61 (314)
|.=||.+.. ...||+..|..|.+..|-
T Consensus 1 C~VC~~~~~---g~hygv~sC~aC~~FFRR 27 (72)
T cd07156 1 CGVCGDRAT---GYHFNAMTCEGCKGFFRR 27 (72)
T ss_pred CCccCccCc---ccEECcceehhhhhhhch
Confidence 455666544 348999999999998774
No 211
>PF12156 ATPase-cat_bd: Putative metal-binding domain of cation transport ATPase; InterPro: IPR021993 This domain is found in bacteria, and is approximately 90 amino acids in length. It is found associated with PF00403 from PFAM, PF00122 from PFAM, PF00702 from PFAM. The cysteine-rich nature and composition suggest this might be a cation-binding domain; most members are annotated as being cation transport ATPases.
Probab=39.11 E-value=33 Score=25.34 Aligned_cols=31 Identities=32% Similarity=0.703 Sum_probs=23.2
Q ss_pred CCcCCCCCCC---CeEEeccc---ceechhhHHHHhh
Q 021294 31 HCADCGSPDP---KWVSLSTG---VFICIKCSGIHRS 61 (314)
Q Consensus 31 ~C~dC~~~~p---~w~s~~~g---~~~C~~C~~~Hr~ 61 (314)
.|.-||.+-| .|...--| .|-|..|.+|...
T Consensus 2 ~C~HCg~~~p~~~~~~~~~~g~~~~FCC~GC~~V~~~ 38 (88)
T PF12156_consen 2 KCYHCGLPVPEGAKITVEIDGEERPFCCPGCQAVYQL 38 (88)
T ss_pred CCCCCCCCCCCCCCeeeeeCCCccccccHHHHHHHHH
Confidence 6999999876 34333334 8999999999864
No 212
>PF04770 ZF-HD_dimer: ZF-HD protein dimerisation region; InterPro: IPR006456 The homeodomain (HD) is a 60-amino acid DNA-binding domain found in many transcription factors. HD-containing proteins are found in diverse organisms such as humans, Drosophila, nematode worms, and plants, where they play important roles in development. Zinc-finger-homeodomain (ZF- HD) subfamily proteins have only been identified in plants, and likely play plant specific roles. ZF-HD proteins are expressed predominantly or exclusively in floral tissue, indicating a likely regulatory role during floral development []. The ZF-HD class of homeodomain proteins may also be involved in the photosynthesis-related mesophyll-specific gene expression of phosphoenolpyruvate carboxylase in C4 species [] and in pathogen signaling and plant defense mechanisms []. These proteins share three domains of high sequence similarity: the homeodomain (II) located at the carboxy-terminus, and two other segments (Ia and Ib) located in the amino-terminal part. These N-terminal domains contain five conserved cysteine residues and at least three conserved histidine residues whose spacing ressembles zinc-binding domains involved in dimerization of transcription factors. Although the two domains contain at least eight potential zinc-binding amino-acids, the unique spacing of the conserved cysteine and histidine residues within domain Ib suggests that both domains form one rather than two zinc finger structures. The two conserved motifs Ia and Ib constitute a dimerization domain which is sufficient for the formation of homo- and heterodimers []. This entry represents the N-terminal Cysteine/Histidine-rich dimerization domain. The companion ZF-HD homeobox domain is described in IPR006455 from INTERPRO.
Probab=37.72 E-value=9.2 Score=26.04 Aligned_cols=28 Identities=29% Similarity=0.606 Sum_probs=22.0
Q ss_pred CCCCCCCC-eEEecccceechhhHHHHhhc
Q 021294 34 DCGSPDPK-WVSLSTGVFICIKCSGIHRSL 62 (314)
Q Consensus 34 dC~~~~p~-w~s~~~g~~~C~~C~~~Hr~l 62 (314)
-|+.-.|. +..-+...+.|..| |-||+|
T Consensus 24 GCgEFm~~~g~eg~~~al~CaAC-gCHRnF 52 (60)
T PF04770_consen 24 GCGEFMPSPGEEGTPEALKCAAC-GCHRNF 52 (60)
T ss_pred cccccccCCCCCCCcccceeccc-Ccchhc
Confidence 48877776 66667788999988 788886
No 213
>PF13119 DUF3973: Domain of unknown function (DUF3973)
Probab=37.50 E-value=15 Score=22.69 Aligned_cols=13 Identities=46% Similarity=1.083 Sum_probs=10.6
Q ss_pred eechhhHHHHhhc
Q 021294 50 FICIKCSGIHRSL 62 (314)
Q Consensus 50 ~~C~~C~~~Hr~l 62 (314)
|-|+.||.+|-+-
T Consensus 2 yYCi~Cs~~h~e~ 14 (41)
T PF13119_consen 2 YYCINCSEIHHEK 14 (41)
T ss_pred EEEEEhHHhHHhh
Confidence 5699999999763
No 214
>cd03031 GRX_GRX_like Glutaredoxin (GRX) family, GRX-like domain containing protein subfamily; composed of uncharacterized eukaryotic proteins containing a GRX-like domain having only one conserved cysteine, aligning to the C-terminal cysteine of the CXXC motif of GRXs. This subfamily is predominantly composed of plant proteins. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins via a redox active CXXC motif using a similar dithiol mechanism employed by TRXs. GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. Proteins containing only the C-terminal cysteine are generally redox inactive.
Probab=37.28 E-value=19 Score=29.37 Aligned_cols=41 Identities=22% Similarity=0.548 Sum_probs=29.3
Q ss_pred CCcHHHHHHHHHcCCCCCCCcCCCCCCCCeEEecccceechhhHHHHhhc
Q 021294 13 VSGPRARLENLLRQPGNRHCADCGSPDPKWVSLSTGVFICIKCSGIHRSL 62 (314)
Q Consensus 13 ~~~~~~~~~~l~~~~~N~~C~dC~~~~p~w~s~~~g~~~C~~C~~~Hr~l 62 (314)
....+++|+.+....+...|.-||.. +-.+|..|.|-|+.+
T Consensus 83 ~G~L~~lL~~~~~~~~~~~C~~Cgg~---------rfv~C~~C~Gs~k~~ 123 (147)
T cd03031 83 SGELRKLLKGIRARAGGGVCEGCGGA---------RFVPCSECNGSCKVF 123 (147)
T ss_pred cCCHHHHHhhcccccCCCCCCCCCCc---------CeEECCCCCCcceEE
Confidence 34456666666555567779999964 456899999998764
No 215
>COG1734 DksA DnaK suppressor protein [Signal transduction mechanisms]
Probab=37.04 E-value=15 Score=28.94 Aligned_cols=31 Identities=26% Similarity=0.676 Sum_probs=20.8
Q ss_pred CCCcCCCCCCC-CeEEecccceechhhHHHHh
Q 021294 30 RHCADCGSPDP-KWVSLSTGVFICIKCSGIHR 60 (314)
Q Consensus 30 ~~C~dC~~~~p-~w~s~~~g~~~C~~C~~~Hr 60 (314)
..|.+||.+=| .=.-.--+..+|+.|...|-
T Consensus 81 G~Ce~cG~~Ip~~RL~A~P~A~~Ci~cQ~~~E 112 (120)
T COG1734 81 GICEECGEPIPEARLEARPTARLCIECQERAE 112 (120)
T ss_pred cchhccCCcCCHHHHhhCcchHHHHHHHHHHH
Confidence 48999998744 11122236788999998763
No 216
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=36.85 E-value=23 Score=33.03 Aligned_cols=36 Identities=22% Similarity=0.582 Sum_probs=26.8
Q ss_pred HHHHHHHHc-CCCCCCCcCCCCCCCCeEEecccceechhhHHHH
Q 021294 17 RARLENLLR-QPGNRHCADCGSPDPKWVSLSTGVFICIKCSGIH 59 (314)
Q Consensus 17 ~~~~~~l~~-~~~N~~C~dC~~~~p~w~s~~~g~~~C~~C~~~H 59 (314)
++.++..+. .|+ -.|-.||.....|. ++|..|.+.|
T Consensus 342 ~~~~~~~~~~~p~-~~c~~cg~~~~~~~------~~c~~c~~~~ 378 (389)
T PRK11788 342 RDLVGEQLKRKPR-YRCRNCGFTARTLY------WHCPSCKAWE 378 (389)
T ss_pred HHHHHHHHhCCCC-EECCCCCCCCccce------eECcCCCCcc
Confidence 445554444 455 55999999999996 7899998887
No 217
>PF14803 Nudix_N_2: Nudix N-terminal; PDB: 3CNG_C.
Probab=36.73 E-value=6.1 Score=23.74 Aligned_cols=29 Identities=28% Similarity=0.675 Sum_probs=13.5
Q ss_pred CCCcCCCCCCCCeEEe---cccceechhhHHHH
Q 021294 30 RHCADCGSPDPKWVSL---STGVFICIKCSGIH 59 (314)
Q Consensus 30 ~~C~dC~~~~p~w~s~---~~g~~~C~~C~~~H 59 (314)
+.|..||.+- ++... +.-=++|..|.-||
T Consensus 1 kfC~~CG~~l-~~~ip~gd~r~R~vC~~Cg~Ih 32 (34)
T PF14803_consen 1 KFCPQCGGPL-ERRIPEGDDRERLVCPACGFIH 32 (34)
T ss_dssp -B-TTT--B--EEE--TT-SS-EEEETTTTEEE
T ss_pred CccccccChh-hhhcCCCCCccceECCCCCCEE
Confidence 4688888762 22222 33346788887766
No 218
>cd07179 2DBD_NR_DBD2 The second DNA-binding domain (DBD) of the 2DBD nuclear receptor is composed of two C4-type zinc fingers. The second DNA-binding domain (DBD) of the 2DBD nuclear receptor (NR) is composed of two C4-type zinc fingers. Each zinc finger contains a group of four Cys residues which co-ordinates a single zinc atom. NRs interact with specific DNA sites upstream of the target gene and modulate the rate of transcriptional initiation. The proteins contain two DBDs in tandem, probably resulting from an ancient recombination event. The 2DBD-NRs are found only in flatworm species, mollusks and arthropods. Their biological function is unknown.
Probab=35.68 E-value=32 Score=24.47 Aligned_cols=27 Identities=30% Similarity=0.817 Sum_probs=20.5
Q ss_pred CcCCCCCCCCeEEecccceechhhHHHHhh
Q 021294 32 CADCGSPDPKWVSLSTGVFICIKCSGIHRS 61 (314)
Q Consensus 32 C~dC~~~~p~w~s~~~g~~~C~~C~~~Hr~ 61 (314)
|.=||.+.- ...||+..|..|.+..|-
T Consensus 1 C~VCg~~~~---g~hygv~sC~aC~~FFRR 27 (74)
T cd07179 1 CRVCGGKSS---GFHFGALTCEGCKGFFRR 27 (74)
T ss_pred CcccCccCc---ceEECceeehhHHHHHHH
Confidence 555776543 458999999999998864
No 219
>TIGR02890 spore_yteA sporulation protein, yteA family. Members of this predicted regulatory protein are found only in endospore-forming members of the Firmicutes group of bacteria, and in nearly every such species; Clostridium perfringens seems to be an exception. The member from Bacillus subtilis, the model system for the study of the sporulation program, has been designated both yteA and yzwB. Some (but not all) members of this family show a strong sequence match to PFAM family pfam01258 the C4-type zinc finger protein, DksA/TraR family, but only one of the four key Cys residues is conserved. All members of this protein family share an additional C-terminal domain. The function of proteins in this family is unknown. YteA was detected in mature spores of Bacillus subtilis by Kuwana, et al., and appears to be expressed under control of sigma-K.
Probab=35.64 E-value=19 Score=29.81 Aligned_cols=34 Identities=21% Similarity=0.576 Sum_probs=22.3
Q ss_pred CCCCCCCcCCCCCCC--CeEEecccceechhhHHHHh
Q 021294 26 QPGNRHCADCGSPDP--KWVSLSTGVFICIKCSGIHR 60 (314)
Q Consensus 26 ~~~N~~C~dC~~~~p--~w~s~~~g~~~C~~C~~~Hr 60 (314)
...=..|.+||.+=| ..-.+. .+-.|+.|...+-
T Consensus 83 ~G~YG~Ce~CGe~I~~~RL~a~P-~a~~Ci~Cq~~~E 118 (159)
T TIGR02890 83 NGTYGICEVCGKPIPYERLEAIP-TATTCVECQNRKE 118 (159)
T ss_pred CCCCCeecccCCcccHHHHhhCC-CcchhHHHHHHhh
Confidence 345568999998632 333333 4567999998763
No 220
>cd07168 NR_DBD_DHR4_like DNA-binding domain of ecdysone-induced DHR4 orphan nuclear receptor is composed of two C4-type zinc fingers. DNA-binding domain of ecdysone-induced DHR4 orphan nuclear receptor is composed of two C4-type zinc fingers. Each zinc finger contains a group of four Cys residues which coordinates a single zinc atom. This domain interacts with specific DNA sites upstream of the target gene and modulates the rate of transcriptional initiation. Ecdysone-induced orphan receptor DHR4 is a member of the nuclear receptor family. DHR4 is expressed during the early Drosophila larval development and is induced by ecdysone. DHR4 coordinates growth and maturation in Drosophila by mediating endocrine response to the attainment of proper body size during larval development. Mutations in DHR4 result in shorter larval development which translates into smaller and lighter flies. Like other members of the nuclear receptor (NR) superfamily of ligand-activated transcription factors, DHR4
Probab=34.84 E-value=37 Score=25.18 Aligned_cols=31 Identities=23% Similarity=0.658 Sum_probs=24.7
Q ss_pred CCCCCcCCCCCCCCeEEecccceechhhHHHHhh
Q 021294 28 GNRHCADCGSPDPKWVSLSTGVFICIKCSGIHRS 61 (314)
Q Consensus 28 ~N~~C~dC~~~~p~w~s~~~g~~~C~~C~~~Hr~ 61 (314)
....|.=||.+.- ...||+..|..|.+..|-
T Consensus 5 ~~~~C~VCg~~~~---g~hyGv~sC~aCk~FFRR 35 (90)
T cd07168 5 SPKLCSICEDKAT---GLHYGIITCEGCKGFFKR 35 (90)
T ss_pred cCCCCcccCCcCc---ceEECceehhhhhHhhhh
Confidence 3456999997553 568999999999998864
No 221
>cd07164 NR_DBD_PNR_like_1 DNA-binding domain of the photoreceptor cell-specific nuclear receptor (PNR) like proteins is composed of two C4-type zinc fingers. DNA-binding domain of the photoreceptor cell-specific nuclear receptor (PNR) like proteins is composed of two C4-type zinc fingers. Each zinc finger contains a group of four Cys residues which co-ordinates a single zinc atom. PNR interacts with specific DNA sites upstream of the target gene and modulates the rate of transcriptional initiation. PNR is a member of nuclear receptor superfamily of the ligand-activated transcription factors. PNR is expressed only in the outer layer of retinal photoreceptor cells. It may be involved in the signaling pathway regulating photoreceptor differentiation and/or maintenance. It most likely binds to DNA as a homodimer. Like other members of the nuclear receptor (NR) superfamily of ligand-activated transcription factors, PNR has a central well conserved DNA binding domain (DBD), a variable N-t
Probab=34.65 E-value=26 Score=25.20 Aligned_cols=27 Identities=30% Similarity=0.671 Sum_probs=20.4
Q ss_pred CcCCCCCCCCeEEecccceechhhHHHHhh
Q 021294 32 CADCGSPDPKWVSLSTGVFICIKCSGIHRS 61 (314)
Q Consensus 32 C~dC~~~~p~w~s~~~g~~~C~~C~~~Hr~ 61 (314)
|.=||.+.- ...||+..|..|.+..|-
T Consensus 1 C~VCg~~~~---g~hyG~~~C~~C~~FFRR 27 (78)
T cd07164 1 CRVCGDRAS---GKHYGVPSCDGCRGFFKR 27 (78)
T ss_pred CcccCccCc---ceEECcchhhhhhhhhhh
Confidence 555776543 358999999999998864
No 222
>cd07155 NR_DBD_ER_like DNA-binding domain of estrogen receptor (ER) and estrogen related receptors (ERR) is composed of two C4-type zinc fingers. DNA-binding domains of estrogen receptor (ER) and estrogen related receptors (ERR) are composed of two C4-type zinc fingers. Each zinc finger contains a group of four Cys residues which co-ordinates a single zinc atom. ER and ERR interact with the palindromic inverted repeat, 5'GGTCAnnnTGACC-3', upstream of the target gene and modulate the rate of transcriptional initiation. ERR and ER are closely related and share sequence similarity, target genes, co-regulators and promoters. While ER is activated by endogenous estrogen, ERR lacks the ability to bind to estrogen. Estrogen receptor mediates the biological effects of hormone estrogen by the binding of the receptor dimer to estrogen response element of target genes. However, ERRs seem to interfere with the classic ER-mediated estrogen responsive signaling by targeting the same set of genes. E
Probab=34.28 E-value=27 Score=24.84 Aligned_cols=27 Identities=26% Similarity=0.637 Sum_probs=20.6
Q ss_pred CcCCCCCCCCeEEecccceechhhHHHHhh
Q 021294 32 CADCGSPDPKWVSLSTGVFICIKCSGIHRS 61 (314)
Q Consensus 32 C~dC~~~~p~w~s~~~g~~~C~~C~~~Hr~ 61 (314)
|.=||.+.. ...||+..|..|.+..|-
T Consensus 1 C~VC~~~~~---g~hygv~sC~aCk~FFRR 27 (75)
T cd07155 1 CLVCGDIAS---GYHYGVASCEACKAFFKR 27 (75)
T ss_pred CcccCccCc---ceEEChhhhhhhHHHHHH
Confidence 556776543 468999999999998763
No 223
>cd06965 NR_DBD_Ppar DNA-binding domain of peroxisome proliferator-activated receptors (PPAR) is composed of two C4-type zinc fingers. DNA-binding domain of peroxisome proliferator-activated receptors (PPAR) is composed of two C4-type zinc fingers. Each zinc finger contains a group of four Cys residues which co-ordinates a single zinc atom. PPAR interacts with specific DNA sites upstream of the target gene and modulates the rate of transcriptional initiation. Peroxisome proliferator-activated receptors (PPARs) are members of the nuclear receptor superfamily of ligand-activated transcription factors. PPARs play important roles in regulating cellular differentiation, development and lipid metabolism. Activated PPAR forms a heterodimer with the retinoid X receptor (RXR) that binds to the hormone response elements, which are composed of two direct repeats of the consensus sequence 5'-AGGTCA-3' separated by one to five base pair located upstream of the peroxisome proliferator responsive gene
Probab=33.96 E-value=20 Score=26.19 Aligned_cols=27 Identities=33% Similarity=0.824 Sum_probs=21.5
Q ss_pred CcCCCCCCCCeEEecccceechhhHHHHhh
Q 021294 32 CADCGSPDPKWVSLSTGVFICIKCSGIHRS 61 (314)
Q Consensus 32 C~dC~~~~p~w~s~~~g~~~C~~C~~~Hr~ 61 (314)
|.=||.+.- ...||++.|..|.+..|-
T Consensus 2 C~VCg~~~~---g~hyGv~sC~aCk~FFRR 28 (84)
T cd06965 2 CRVCGDKAS---GFHYGVHACEGCKGFFRR 28 (84)
T ss_pred CcccCccCc---ceEEChhhhhhhhhheee
Confidence 777886553 457999999999999874
No 224
>PF06689 zf-C4_ClpX: ClpX C4-type zinc finger; InterPro: IPR010603 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The ClpX heat shock protein of Escherichia coli is a member of the universally conserved Hsp100 family of proteins, and possesses a putative zinc finger motif of the C4 type []. This presumed zinc binding domain (ZBD) is found at the N terminus of the ClpX protein. ClpX is an ATPase which functions both as a substrate specificity component of the ClpXP protease and as a molecular chaperone. ZBD is a member of the treble clef zinc finger family, a motif known to facilitate protein-ligand, protein-DNA, and protein-protein interactions and forms a constitutive dimer that is essential for the degradation of some, but not all, ClpX substrates []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0016887 ATPase activity, 0046983 protein dimerization activity, 0006200 ATP catabolic process, 0019538 protein metabolic process; PDB: 2DS8_B 2DS6_B 2DS5_A 1OVX_A 2DS7_A.
Probab=33.90 E-value=51 Score=20.51 Aligned_cols=29 Identities=31% Similarity=0.877 Sum_probs=17.6
Q ss_pred CCCcCCCCCCC---CeEEecccceechhhHHH
Q 021294 30 RHCADCGSPDP---KWVSLSTGVFICIKCSGI 58 (314)
Q Consensus 30 ~~C~dC~~~~p---~w~s~~~g~~~C~~C~~~ 58 (314)
+.|.=||.+.. .-++-+-|++||..|...
T Consensus 2 ~~CSFCgr~~~~v~~li~g~~~~~IC~~Cv~~ 33 (41)
T PF06689_consen 2 KRCSFCGRPESEVGRLISGPNGAYICDECVEQ 33 (41)
T ss_dssp -B-TTT--BTTTSSSEEEES-SEEEEHHHHHH
T ss_pred CCccCCCCCHHHHhceecCCCCcEECHHHHHH
Confidence 46788887654 455556589999999864
No 225
>cd06963 NR_DBD_GR_like The DNA binding domain of GR_like nuclear receptors is composed of two C4-type zinc fingers. The DNA binding domain of GR_like nuclear receptors is composed of two C4-type zinc fingers. Each zinc finger contains a group of four Cys residues which co-ordinates a single zinc atom. It interacts with specific DNA sites upstream of the target gene and modulates the rate of transcriptional initiation. This family of NRs includes four types of nuclear hormone receptors: glucocorticoid receptor (GR), mineralocorticoid receptor (MR), progesterone receptor (PR), and androgen receptor (AR). The receptors bind to common DNA elements containing a partial palindrome of the core sequence 5'-TGTTCT-3' with a 3bp spacer. These four receptors regulate some of the most fundamental physiological functions such as the stress response, metabolism, electrolyte homeostasis, immune function, growth, development, and reproduction. The NRs in this family have high sequence homology and sha
Probab=33.87 E-value=32 Score=24.40 Aligned_cols=27 Identities=26% Similarity=0.621 Sum_probs=20.3
Q ss_pred CcCCCCCCCCeEEecccceechhhHHHHhh
Q 021294 32 CADCGSPDPKWVSLSTGVFICIKCSGIHRS 61 (314)
Q Consensus 32 C~dC~~~~p~w~s~~~g~~~C~~C~~~Hr~ 61 (314)
|.=||.+. ....||++.|..|.+..|-
T Consensus 1 C~VCg~~a---~~~hygv~sC~aCk~FFRR 27 (73)
T cd06963 1 CLICGDEA---SGCHYGVLTCGSCKVFFKR 27 (73)
T ss_pred CcccCccC---cceEECceeehhhhHhHHH
Confidence 45566543 3568999999999998864
No 226
>PF00105 zf-C4: Zinc finger, C4 type (two domains); InterPro: IPR001628 Steroid or nuclear hormone receptors constitute an important superfamily of transcription regulators that are involved in widely diverse physiological functions, including control of embryonic development, cell differentiation and homeostasis. The receptors function as dimeric molecules in nuclei to regulate the transcription of target genes in a ligand-responsive manner. Nuclear hormone receptors consist of a highly conserved DNA-binding domain that recognises specific sequences, connected via a linker region to a C-terminal ligand-binding domain (IPR000536 from INTERPRO). In addition, certain nuclear hormone receptors have an N-terminal modulatory domain (IPR001292 from INTERPRO). The DNA-binding domain can elicit either an activating or repressing effect by binding to specific regions of the DNA known as hormone-response elements [, ]. These response elements position the receptors, and the complexes recruited by them, close to the genes of which transcription is affected. The DNA-binding domains of nuclear receptors consist of two zinc-nucleated modules and a C-terminal extension, where residues in the first zinc module determine the specificity of the DNA recognition and residues in the second zinc module are involved in dimerisation. The DNA-binding domain is furthermore involved in several other functions including nuclear localisation, and interaction with transcription factors and co-activators []. Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the two C4-type zinc finger modules involved in DNA-binding. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0008270 zinc ion binding, 0043565 sequence-specific DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 1DSZ_A 1LO1_A 3M9E_F 2EBL_A 1GA5_B 1A6Y_B 1HLZ_B 1HRA_A 1KB6_B 1KB4_B ....
Probab=33.27 E-value=37 Score=23.62 Aligned_cols=27 Identities=30% Similarity=0.768 Sum_probs=20.6
Q ss_pred CCCcCCCCCCCCeEEecccceechhhHHHH
Q 021294 30 RHCADCGSPDPKWVSLSTGVFICIKCSGIH 59 (314)
Q Consensus 30 ~~C~dC~~~~p~w~s~~~g~~~C~~C~~~H 59 (314)
+.|.=||.+. ...+||++.|..|...=
T Consensus 1 ~~C~VCg~~~---~~~~ygv~sC~~C~~FF 27 (70)
T PF00105_consen 1 KKCKVCGDPA---SGYHYGVLSCNACKMFF 27 (70)
T ss_dssp -BSTTTSSBE---SEEETTEEEEHHHHHHH
T ss_pred CCCeECCCcc---Ccccccccccccceeee
Confidence 4688898743 35689999999999853
No 227
>cd06958 NR_DBD_COUP_TF DNA-binding domain of chicken ovalbumin upstream promoter transcription factors (COUP-TFs) is composed of two C4-type zinc fingers. DNA-binding domain of chicken ovalbumin upstream promoter transcription factors (COUP-TFs) is composed of two C4-type zinc fingers. Each zinc finger contains a group of four Cys residues which co-ordinates a single zinc atom. COUP-TFs are orphan members of the steroid/thyroid hormone receptor superfamily. They are expressed in many tissues and are involved in the regulation of several important biological processes, such as neurogenesis, organogenesis, cell fate determination, and metabolic homeostasis. COUP-TFs homodimerize or heterodimerize with retinoid X receptor (RXR) and a few other nuclear receptors and bind to a variety of response elements that are composed of imperfect AGGTCA direct or inverted repeats with various spacings. COUP-TFs are generally considered to be repressors of transcription for other nuclear hormone recept
Probab=32.93 E-value=28 Score=24.65 Aligned_cols=27 Identities=26% Similarity=0.721 Sum_probs=20.4
Q ss_pred CcCCCCCCCCeEEecccceechhhHHHHhh
Q 021294 32 CADCGSPDPKWVSLSTGVFICIKCSGIHRS 61 (314)
Q Consensus 32 C~dC~~~~p~w~s~~~g~~~C~~C~~~Hr~ 61 (314)
|.=||.+.- ...||+..|..|.+..|-
T Consensus 1 C~VCg~~~~---g~hygv~sC~aC~~FFRR 27 (73)
T cd06958 1 CVVCGDKSS---GKHYGQFTCEGCKSFFKR 27 (73)
T ss_pred CCccCccCc---ceEEChhhhhhhhhhhhh
Confidence 455776443 458999999999998864
No 228
>cd00202 ZnF_GATA Zinc finger DNA binding domain; binds specifically to DNA consensus sequence [AT]GATA[AG] promoter elements; a subset of family members may also bind protein; zinc-finger consensus topology is C-X(2)-C-X(17)-C-X(2)-C
Probab=32.78 E-value=38 Score=22.53 Aligned_cols=34 Identities=29% Similarity=0.760 Sum_probs=26.7
Q ss_pred CCcCCCCC-CCCeEEec-ccceechhhHHHHhhcCC
Q 021294 31 HCADCGSP-DPKWVSLS-TGVFICIKCSGIHRSLGV 64 (314)
Q Consensus 31 ~C~dC~~~-~p~w~s~~-~g~~~C~~C~~~Hr~lg~ 64 (314)
.|..|+.. -|.|=.-. -+..+|-.|.-..+..|.
T Consensus 1 ~C~~C~~~~Tp~WR~g~~~~~~LCNaCgl~~~k~~~ 36 (54)
T cd00202 1 ACSNCGTTTTPLWRRGPSGGSTLCNACGLYWKKHGV 36 (54)
T ss_pred CCCCCCCCCCcccccCCCCcchHHHHHHHHHHhcCC
Confidence 59999985 47888765 788999999877776653
No 229
>KOG4217 consensus Nuclear receptors of the nerve growth factor-induced protein B type [Transcription]
Probab=32.62 E-value=16 Score=35.42 Aligned_cols=30 Identities=30% Similarity=0.631 Sum_probs=25.6
Q ss_pred CCCCCCcCCCCCCCCeEEecccceechhhHHHH
Q 021294 27 PGNRHCADCGSPDPKWVSLSTGVFICIKCSGIH 59 (314)
Q Consensus 27 ~~N~~C~dC~~~~p~w~s~~~g~~~C~~C~~~H 59 (314)
++...||-||... |+.-|||-.|..|.|.-
T Consensus 267 ~~e~~CAVCgDnA---aCqHYGvRTCEGCKGFF 296 (605)
T KOG4217|consen 267 SAEGLCAVCGDNA---ACQHYGVRTCEGCKGFF 296 (605)
T ss_pred CccceeeecCChH---HhhhcCccccccchHHH
Confidence 4678999999854 57899999999999964
No 230
>PF01780 Ribosomal_L37ae: Ribosomal L37ae protein family; InterPro: IPR002674 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This ribosomal protein is found in archaebacteria and eukaryotes []. Ribosomal protein L37 has a single zinc finger-like motif of the C2-C2 type [].; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 4A1E_Y 4A17_Y 4A1C_Y 4A1A_Y 3O58_g 3IZS_m 3O5H_g 1S1I_9 3IZR_m 1YSH_D ....
Probab=32.60 E-value=23 Score=26.40 Aligned_cols=40 Identities=28% Similarity=0.619 Sum_probs=29.2
Q ss_pred cHHHHHHHHH-cCCCCCCCcCCCCCCCCeEEecccceechhhH
Q 021294 15 GPRARLENLL-RQPGNRHCADCGSPDPKWVSLSTGVFICIKCS 56 (314)
Q Consensus 15 ~~~~~~~~l~-~~~~N~~C~dC~~~~p~w~s~~~g~~~C~~C~ 56 (314)
..++.+.++- .+...-.|.-||... ---+..||+-|..|.
T Consensus 20 slRK~vkkie~~q~~ky~Cp~Cgk~~--vkR~a~GIW~C~~C~ 60 (90)
T PF01780_consen 20 SLRKRVKKIEISQHAKYTCPFCGKTS--VKRVATGIWKCKKCG 60 (90)
T ss_dssp HHHHHHHHHHHHHHS-BEESSSSSSE--EEEEETTEEEETTTT
T ss_pred HHHHHHHHHHHHHhCCCcCCCCCCce--eEEeeeEEeecCCCC
Confidence 3466666655 457888999999987 345578999999994
No 231
>cd06959 NR_DBD_EcR_like The DNA-binding domain of Ecdysone receptor (EcR) like nuclear receptor family is composed of two C4-type zinc fingers. The DNA-binding domain of Ecdysone receptor (EcR) like nuclear receptor family is composed of two C4-type zinc fingers. Each zinc finger contains a group of four Cys residues which co-ordinates a single zinc atom. EcR interacts with specific DNA sites upstream of the target gene and modulates the rate of transcriptional initiation. This family includes three types of nuclear receptors: Ecdysone receptor (EcR), Liver X receptor (LXR) and Farnesoid X receptor (FXR). The DNA binding activity is regulated by their corresponding ligands. The ligands for EcR are ecdysteroids; LXR is regulated by oxidized cholesterol derivatives or oxysterols; and bile acids control FXR's activities. Like other members of the nuclear receptor (NR) superfamily of ligand-activated transcription factors, EcR-like receptors have a central well conserved DNA binding domai
Probab=31.89 E-value=35 Score=24.12 Aligned_cols=27 Identities=33% Similarity=0.847 Sum_probs=21.0
Q ss_pred CcCCCCCCCCeEEecccceechhhHHHHhh
Q 021294 32 CADCGSPDPKWVSLSTGVFICIKCSGIHRS 61 (314)
Q Consensus 32 C~dC~~~~p~w~s~~~g~~~C~~C~~~Hr~ 61 (314)
|.=||.+.. ...||+..|..|.+..|-
T Consensus 2 C~vCg~~~~---~~hygv~sC~aC~~FFRR 28 (73)
T cd06959 2 CVVCGDKAS---GFHYGVLSCEGCKGFFRR 28 (73)
T ss_pred CceeCCcCc---ceEECceeehhhHHHHHH
Confidence 666776443 468999999999998864
No 232
>cd06955 NR_DBD_VDR DNA-binding domain of vitamin D receptors (VDR) is composed of two C4-type zinc fingers. DNA-binding domain of vitamin D receptors (VDR) is composed of two C4-type zinc fingers. Each zinc finger contains a group of four Cys residues which coordinates a single zinc atom. VDR interacts with a VDR response element, a direct repeat of GGTTCA DNA site with 3 bp spacer upstream of the target gene, and modulates the rate of transcriptional initiation. VDR is a member of the nuclear receptor (NR) superfamily that functions as classical endocrine receptors. VDR controls a wide range of biological activities including calcium metabolism, cell proliferation and differentiation, and immunomodulation. VDR is a high-affinity receptor for the biologically most active Vitamin D metabolite, 1alpha,25-dihydroxyvitamin D3 (1alpha,25(OH)2D3). The binding of the ligand to the receptor induces a conformational change of the ligand binding domain (LBD) with consequent dissociation of core
Probab=31.74 E-value=19 Score=27.78 Aligned_cols=30 Identities=27% Similarity=0.678 Sum_probs=24.2
Q ss_pred CCCCcCCCCCCCCeEEecccceechhhHHHHhh
Q 021294 29 NRHCADCGSPDPKWVSLSTGVFICIKCSGIHRS 61 (314)
Q Consensus 29 N~~C~dC~~~~p~w~s~~~g~~~C~~C~~~Hr~ 61 (314)
...|.=||.+.- ...||+..|..|.++.|-
T Consensus 6 ~~~C~VCg~~a~---g~hyGv~sC~aCk~FFRR 35 (107)
T cd06955 6 PRICGVCGDRAT---GFHFNAMTCEGCKGFFRR 35 (107)
T ss_pred CCCCeecCCcCc---ccEECcceeeeecceecc
Confidence 466999997654 458999999999998763
No 233
>cd06961 NR_DBD_TR DNA-binding domain of thyroid hormone receptors (TRs) is composed of two C4-type zinc fingers. DNA-binding domain of thyroid hormone receptors (TRs) is composed of two C4-type zinc fingers. Each zinc finger contains a group of four Cys residues which co-ordinates a single zinc atom. TR interacts with the thyroid response element, which is a DNA site with direct repeats of the consensus sequence 5'-AGGTCA-3' separated by one to five base pairs, upstream of target genes and modulates the rate of transcriptional initiation. Thyroid hormone receptor (TR) mediates the actions of thyroid hormones, which play critical roles in growth, development, and homeostasis in mammals. They regulate overall metabolic rate, cholesterol and triglyceride levels, and heart rate, and affect mood. TRs are expressed from two separate genes (alpha and beta) in human and each gene generates two isoforms of the receptor through differential promoter usage or splicing. TRalpha functions in the he
Probab=31.51 E-value=28 Score=25.49 Aligned_cols=27 Identities=26% Similarity=0.685 Sum_probs=21.1
Q ss_pred CcCCCCCCCCeEEecccceechhhHHHHhh
Q 021294 32 CADCGSPDPKWVSLSTGVFICIKCSGIHRS 61 (314)
Q Consensus 32 C~dC~~~~p~w~s~~~g~~~C~~C~~~Hr~ 61 (314)
|.=||.+.- ...||+..|..|++..|-
T Consensus 2 C~VCg~~~~---g~hygv~sC~aC~~FFRR 28 (85)
T cd06961 2 CVVCGDKAT---GYHYRCITCEGCKGFFRR 28 (85)
T ss_pred CceeCCcCc---ceEEChhhhhhhhHhhHh
Confidence 667876543 458999999999998864
No 234
>smart00399 ZnF_C4 c4 zinc finger in nuclear hormone receptors.
Probab=31.40 E-value=25 Score=24.55 Aligned_cols=27 Identities=30% Similarity=0.744 Sum_probs=20.8
Q ss_pred CcCCCCCCCCeEEecccceechhhHHHHhh
Q 021294 32 CADCGSPDPKWVSLSTGVFICIKCSGIHRS 61 (314)
Q Consensus 32 C~dC~~~~p~w~s~~~g~~~C~~C~~~Hr~ 61 (314)
|.-||.+.- ...||+..|..|.+..|-
T Consensus 2 C~vC~~~~~---~~hygv~~C~aC~~FFRR 28 (70)
T smart00399 2 CCVCGDHAS---GFHFGVCSCRACKAFFRR 28 (70)
T ss_pred CeEeCCcCc---ccEeCCcEechhhhhhhh
Confidence 666776553 348999999999998763
No 235
>PRK10778 dksA RNA polymerase-binding transcription factor; Provisional
Probab=31.31 E-value=54 Score=26.90 Aligned_cols=37 Identities=16% Similarity=0.398 Sum_probs=23.7
Q ss_pred cCCCCCCCcCCCCCCC-CeEEecccceechhhHHHHhh
Q 021294 25 RQPGNRHCADCGSPDP-KWVSLSTGVFICIKCSGIHRS 61 (314)
Q Consensus 25 ~~~~N~~C~dC~~~~p-~w~s~~~g~~~C~~C~~~Hr~ 61 (314)
..+.-..|-+||.+=| .=.-+--++..|+.|...+-.
T Consensus 107 ~~gtYG~Ce~CGe~I~~~RL~A~P~A~~CI~CQe~~E~ 144 (151)
T PRK10778 107 EDEDFGYCESCGVEIGIRRLEARPTADLCIDCKTLAEI 144 (151)
T ss_pred hCCCCceeccCCCcccHHHHhcCCCccccHHHHHHHHH
Confidence 4567799999998632 111111145679999997754
No 236
>PF14376 Haem_bd: Haem-binding domain
Probab=31.25 E-value=53 Score=26.37 Aligned_cols=100 Identities=14% Similarity=0.238 Sum_probs=52.0
Q ss_pred CCCCCCCCcHHHHHHHHHcCCCCCCCcCCCCCCCCeE---EecccceechhhHHHHhhcCCceeEEEEeccCCCCHH---
Q 021294 7 NSDPKNVSGPRARLENLLRQPGNRHCADCGSPDPKWV---SLSTGVFICIKCSGIHRSLGVHISKVLSVKLDEWTNE--- 80 (314)
Q Consensus 7 ~~~~~~~~~~~~~~~~l~~~~~N~~C~dC~~~~p~w~---s~~~g~~~C~~C~~~Hr~lg~~~s~v~s~~~d~w~~~--- 80 (314)
+..+..+....+.++.|++. -|.||.+..+.|- .+.-..++ -.-|-.-| -+.++++.|...
T Consensus 23 ~~~~~~~~~~p~~v~~il~~----~CydCHSn~T~~PwYa~i~p~s~l----~~~dI~~G-----r~~lNfs~~~~~~~~ 89 (137)
T PF14376_consen 23 NPPFTKSIKAPEEVKIILKN----SCYDCHSNNTRYPWYANIAPASWL----MEKDIKEG-----RRHLNFSEWGSYSKR 89 (137)
T ss_pred CCCccccccchHHHHHHHHc----cccccCCCCCCCccceecCchHHH----HHHHHHHH-----HHHhCcchhhhcCcc
Confidence 45556666677778888854 7999999766554 44322221 01222222 245677888532
Q ss_pred -HHHHHHHhcchhHHHHHHhhhCCCC-CC--CCCCCCCHHHH---HHHHhc
Q 021294 81 -QVDALAEMGGNIAVNKKYEAYTPGN-LK--KPSPNSFIDER---SDFIRR 124 (314)
Q Consensus 81 -~v~~~~~~gGN~~~n~~~e~~~~~~-~~--kp~~~~~~~~r---~~fI~~ 124 (314)
.-..| +...+.+-+..+|.. +. .|...-+.++| .+||+.
T Consensus 90 ~~~~~l-----~~i~~~I~~g~MP~~~Y~~~H~~a~Ls~~ek~~Ll~Wi~~ 135 (137)
T PF14376_consen 90 KQEAKL-----AKIEEVIEDGEMPPPSYTLLHWEAKLSEEEKQALLNWIKE 135 (137)
T ss_pred cCHHHH-----HHHHHHHHcCCCChHHHhhhCCCCCCCHHHHHHHHHHHHH
Confidence 11122 233455666666642 22 33333444555 466654
No 237
>cd07166 NR_DBD_REV_ERB DNA-binding domain of REV-ERB receptor-like is composed of two C4-type zinc fingers. DNA-binding domain of REV-ERB receptor- like is composed of two C4-type zinc fingers. Each zinc finger contains a group of four Cys residues which coordinates a single zinc atom. This domain interacts with specific DNA sites upstream of the target gene and modulates the rate of transcriptional initiation. REV-ERB receptors are transcriptional regulators belonging to the nuclear receptor superfamily. They regulate a number of physiological functions including the circadian rhythm, lipid metabolism, and cellular differentiation. REV-ERB receptors bind as a monomer to a (A/G)GGTCA half-site with a 5' AT-rich extension or as a homodimer to a direct repeat 2 element (AGGTCA sequence with a 2-bp spacer), indicating functional diversity. When bound to the DNA, they recruit corepressors (NcoR/histone deacetylase 3) to the promoter, resulting in repression of the target genes. The porphyr
Probab=31.19 E-value=24 Score=26.16 Aligned_cols=30 Identities=30% Similarity=0.677 Sum_probs=23.9
Q ss_pred CCCCcCCCCCCCCeEEecccceechhhHHHHhh
Q 021294 29 NRHCADCGSPDPKWVSLSTGVFICIKCSGIHRS 61 (314)
Q Consensus 29 N~~C~dC~~~~p~w~s~~~g~~~C~~C~~~Hr~ 61 (314)
+..|.=||.+.- ...||++.|..|.+..|-
T Consensus 3 ~~~C~VCg~~a~---g~hyGv~sC~aCk~FFRR 32 (89)
T cd07166 3 VVLCKVCGDKAS---GFHYGVHACEGCKGFFRR 32 (89)
T ss_pred CCCCcccCccCc---ceEEChhhhhhHhhEecc
Confidence 456999997654 457999999999998764
No 238
>smart00782 PhnA_Zn_Ribbon PhnA Zinc-Ribbon. This protein family includes an uncharacterised member designated phnA in Escherichia coli, part of a large operon associated with alkylphosphonate uptake and carbon-phosphorus bond cleavage. This protein is not related to the characterised phosphonoacetate hydrolase designated PhnA.
Probab=30.65 E-value=34 Score=22.19 Aligned_cols=31 Identities=26% Similarity=0.700 Sum_probs=21.5
Q ss_pred CCCCCCcCCCCCCC--CeE-------EecccceechhhHH
Q 021294 27 PGNRHCADCGSPDP--KWV-------SLSTGVFICIKCSG 57 (314)
Q Consensus 27 ~~N~~C~dC~~~~p--~w~-------s~~~g~~~C~~C~~ 57 (314)
..+..|-=||+..+ .|. +..-.|++|..|.+
T Consensus 5 Rs~~kCELC~a~~~L~vy~Vpp~~~~~~d~~iliC~tC~~ 44 (47)
T smart00782 5 RCESKCELCGSDSPLVVYAVPPSSDVTADNSVMLCDTCHS 44 (47)
T ss_pred HcCCcccCcCCCCCceEEecCCCCCCCccceeeechHHHH
Confidence 34555999998664 333 34558999999975
No 239
>smart00659 RPOLCX RNA polymerase subunit CX. present in RNA polymerase I, II and III
Probab=30.63 E-value=22 Score=22.61 Aligned_cols=23 Identities=30% Similarity=0.749 Sum_probs=16.3
Q ss_pred CCcCCCCCCCCeEEecccceechhhH
Q 021294 31 HCADCGSPDPKWVSLSTGVFICIKCS 56 (314)
Q Consensus 31 ~C~dC~~~~p~w~s~~~g~~~C~~C~ 56 (314)
.|.+||+..... ..+.+-|..|.
T Consensus 4 ~C~~Cg~~~~~~---~~~~irC~~CG 26 (44)
T smart00659 4 ICGECGRENEIK---SKDVVRCRECG 26 (44)
T ss_pred ECCCCCCEeecC---CCCceECCCCC
Confidence 699999854322 45778899884
No 240
>cd07163 NR_DBD_TLX DNA-binding domain of Tailless (TLX) is composed of two C4-type zinc fingers. DNA-binding domain of Tailless (TLX) is composed of two C4-type zinc fingers. Each zinc finger contains a group of four Cys residues which co-ordinates a single zinc atom. TLX interacts with specific DNA sites upstream of the target gene and modulates the rate of transcriptional initiation. TLX is an orphan receptor that is expressed by neural stem/progenitor cells in the adult brain of the subventricular zone (SVZ) and the dentate gyrus (DG). It plays a key role in neural development by promoting cell cycle progression and preventing apoptosis in the developing brain. Like other members of the nuclear receptor (NR) superfamily of ligand-activated transcription factors, TLX has a central well conserved DNA-binding domain (DBD), a variable N-terminal domain, a flexible hinge and a C-terminal ligand binding domain (LBD).
Probab=30.02 E-value=16 Score=27.27 Aligned_cols=30 Identities=27% Similarity=0.733 Sum_probs=24.4
Q ss_pred CCCCcCCCCCCCCeEEecccceechhhHHHHhh
Q 021294 29 NRHCADCGSPDPKWVSLSTGVFICIKCSGIHRS 61 (314)
Q Consensus 29 N~~C~dC~~~~p~w~s~~~g~~~C~~C~~~Hr~ 61 (314)
|..|.=||.+.- ...||+..|..|++..|-
T Consensus 6 ~~~C~VCg~~a~---g~hyGv~sC~aCk~FFRR 35 (92)
T cd07163 6 DIPCKVCGDRSS---GKHYGIYACDGCSGFFKR 35 (92)
T ss_pred CCCCcccCCcCc---ccEECceeeeeeeeEEee
Confidence 677999997554 468999999999998763
No 241
>cd07157 2DBD_NR_DBD1 The first DNA-binding domain (DBD) of the 2DBD nuclear receptors is composed of two C4-type zinc fingers. The first DNA-binding domain (DBD) of the 2DBD nuclear receptors(NRs) is composed of two C4-type zinc fingers. Each zinc finger contains a group of four Cys residues which co-ordinates a single zinc atom. NRs interact with specific DNA sites upstream of the target gene and modulate the rate of transcriptional initiation. Theses proteins contain two DBDs in tandem, probably resulted from an ancient recombination event. The 2DBD-NRs are found only in flatworm species, mollusks and arthropods. Their biological function is unknown.
Probab=29.69 E-value=16 Score=26.84 Aligned_cols=28 Identities=25% Similarity=0.818 Sum_probs=22.3
Q ss_pred CCcCCCCCCCCeEEecccceechhhHHHHhh
Q 021294 31 HCADCGSPDPKWVSLSTGVFICIKCSGIHRS 61 (314)
Q Consensus 31 ~C~dC~~~~p~w~s~~~g~~~C~~C~~~Hr~ 61 (314)
.|.=||.+.- ...||+..|..|++..|-
T Consensus 2 ~C~VCg~~a~---g~hyGv~sC~aCk~FFRR 29 (86)
T cd07157 2 TCQVCGEPAA---GFHHGAYVCEACKKFFMR 29 (86)
T ss_pred CCcccCCcCc---ccEECcceeeEeeeEEec
Confidence 4888887553 568999999999998763
No 242
>KOG4846 consensus Nuclear receptor [Signal transduction mechanisms]
Probab=29.36 E-value=30 Score=33.00 Aligned_cols=31 Identities=29% Similarity=0.648 Sum_probs=24.2
Q ss_pred CCCCCCcCCCCCCCCeEEecccceechhhHHHHh
Q 021294 27 PGNRHCADCGSPDPKWVSLSTGVFICIKCSGIHR 60 (314)
Q Consensus 27 ~~N~~C~dC~~~~p~w~s~~~g~~~C~~C~~~Hr 60 (314)
.+--.|--||....-+ -|||+-|..|.|.-|
T Consensus 130 ~~~~lCkVCgDkASGf---HYGV~aCEGCKGFFR 160 (538)
T KOG4846|consen 130 KAISLCKVCGDKASGF---HYGVTACEGCKGFFR 160 (538)
T ss_pred ceeEeehhhccccccc---eeceeecccchHHHH
Confidence 3446788899877654 599999999999654
No 243
>COG2158 Uncharacterized protein containing a Zn-finger-like domain [General function prediction only]
Probab=28.83 E-value=28 Score=26.64 Aligned_cols=23 Identities=48% Similarity=0.975 Sum_probs=20.6
Q ss_pred CeEEeccc--ceechhhHHHHhhcC
Q 021294 41 KWVSLSTG--VFICIKCSGIHRSLG 63 (314)
Q Consensus 41 ~w~s~~~g--~~~C~~C~~~Hr~lg 63 (314)
.|++-.-| |.-|..|-=|||.=+
T Consensus 52 ewi~~~~G~~VwSC~dC~~iH~ke~ 76 (112)
T COG2158 52 EWISDSNGRKVWSCSDCHWIHRKEG 76 (112)
T ss_pred ceeEcCCCCEEeeccccceecccch
Confidence 89999999 999999999998644
No 244
>TIGR01384 TFS_arch transcription factor S, archaeal. There has been an apparent duplication event in the Halobacteriaceae lineage (Haloarcula, Haloferax, Haloquadratum, Halobacterium and Natromonas). There appears to be a separate duplication in Methanosphaera stadtmanae.
Probab=28.68 E-value=40 Score=25.44 Aligned_cols=29 Identities=28% Similarity=0.716 Sum_probs=22.7
Q ss_pred CCCCCcCCCCCCCCeEEecc--------cceechhhH
Q 021294 28 GNRHCADCGSPDPKWVSLST--------GVFICIKCS 56 (314)
Q Consensus 28 ~N~~C~dC~~~~p~w~s~~~--------g~~~C~~C~ 56 (314)
.+..|..||.....|..+-. =.|+|..|.
T Consensus 61 ~~~~Cp~Cg~~~a~f~~~Q~RsadE~~T~fy~C~~C~ 97 (104)
T TIGR01384 61 TRVECPKCGHKEAYYWLLQTRRADEPETRFYKCTKCG 97 (104)
T ss_pred ccCCCCCCCCCeeEEEEeccCCCCCCcEEEEEeCCCC
Confidence 37899999999998885533 278898884
No 245
>smart00290 ZnF_UBP Ubiquitin Carboxyl-terminal Hydrolase-like zinc finger.
Probab=28.47 E-value=61 Score=20.61 Aligned_cols=22 Identities=32% Similarity=0.913 Sum_probs=16.5
Q ss_pred CCcCCCCCCCCeEEecccceec
Q 021294 31 HCADCGSPDPKWVSLSTGVFIC 52 (314)
Q Consensus 31 ~C~dC~~~~p~w~s~~~g~~~C 52 (314)
+|.+|+....-|+.+.-|-.-|
T Consensus 1 ~C~~C~~~~~l~~CL~C~~~~c 22 (50)
T smart00290 1 RCSVCGTIENLWLCLTCGQVGC 22 (50)
T ss_pred CcccCCCcCCeEEecCCCCccc
Confidence 5999998887777776555555
No 246
>cd07167 NR_DBD_Lrh-1_like The DNA-binding domain of Lrh-1 like nuclear receptor family like is composed of two C4-type zinc fingers. The DNA-binding domain of Lrh-1 like nuclear receptor family like is composed of two C4-type zinc fingers. Each zinc finger contains a group of four Cys residues which co-ordinates a single zinc atom. This domain interacts with specific DNA sites upstream of the target gene and modulates the rate of transcriptional initiation. This nuclear receptor family includes at least three subgroups of receptors that function in embryo development and differentiation, and other processes. FTZ-F1 interacts with the cis-acting DNA motif of ftz gene, which is required at several stages of development. Particularly, FTZ-F1 regulated genes are strongly linked to steroid biosynthesis and sex-determination; LRH-1 is a regulator of bile-acid homeostasis, steroidogenesis, reverse cholesterol transport and the initial stages of embryonic development; SF-1 is an essential regu
Probab=27.59 E-value=43 Score=25.04 Aligned_cols=27 Identities=26% Similarity=0.778 Sum_probs=20.5
Q ss_pred CcCCCCCCCCeEEecccceechhhHHHHhh
Q 021294 32 CADCGSPDPKWVSLSTGVFICIKCSGIHRS 61 (314)
Q Consensus 32 C~dC~~~~p~w~s~~~g~~~C~~C~~~Hr~ 61 (314)
|.=||.+.- ...||+..|..|.+..|-
T Consensus 1 C~VCg~~a~---g~hyGv~sC~aCk~FFRR 27 (93)
T cd07167 1 CPVCGDKVS---GYHYGLLTCESCKGFFKR 27 (93)
T ss_pred CcccCccCc---ceEECchhhhhHHHHHHH
Confidence 555775443 468999999999998864
No 247
>cd06960 NR_DBD_HNF4A DNA-binding domain of heptocyte nuclear factor 4 (HNF4) is composed of two C4-type zinc fingers. DNA-binding domain of hepatocyte nuclear factor 4 (HNF4) is composed of two C4-type zinc fingers. Each zinc finger contains a group of four Cys residues which co-ordinates a single zinc atom. HNF4 interacts with a DNA site, composed of two direct repeats of AGTTCA with 1 bp spacer, which is upstream of target genes and modulates the rate of transcriptional initiation. HNF4 is a member of the nuclear receptor superfamily. HNF4 plays a key role in establishing and maintenance of hepatocyte differentiation in the liver. It is also expressed in gut, kidney, and pancreatic beta cells. HNF4 was originally classified as an orphan receptor, but later it is found that HNF4 binds with very high affinity to a variety of fatty acids. However, unlike other nuclear receptors, the ligands do not act as a molecular switch for HNF4. They seem to constantly bind to the receptor, which is
Probab=27.36 E-value=26 Score=24.98 Aligned_cols=27 Identities=37% Similarity=0.816 Sum_probs=20.4
Q ss_pred CcCCCCCCCCeEEecccceechhhHHHHhh
Q 021294 32 CADCGSPDPKWVSLSTGVFICIKCSGIHRS 61 (314)
Q Consensus 32 C~dC~~~~p~w~s~~~g~~~C~~C~~~Hr~ 61 (314)
|.=||.+.- ...||++.|..|.+..|-
T Consensus 1 C~vCg~~~~---~~hygv~~C~aC~~FFrR 27 (76)
T cd06960 1 CAVCGDRAT---GKHYGVLSCNGCKGFFRR 27 (76)
T ss_pred CCccCccCc---ccEECcceeeeehheeCc
Confidence 555776543 458999999999998763
No 248
>PRK00432 30S ribosomal protein S27ae; Validated
Probab=26.74 E-value=42 Score=21.97 Aligned_cols=25 Identities=32% Similarity=0.783 Sum_probs=18.2
Q ss_pred CCCCCcCCCCCCCCeEEecccceechhh
Q 021294 28 GNRHCADCGSPDPKWVSLSTGVFICIKC 55 (314)
Q Consensus 28 ~N~~C~dC~~~~p~w~s~~~g~~~C~~C 55 (314)
-++.|..||+. ......+-+.|..|
T Consensus 19 ~~~fCP~Cg~~---~m~~~~~r~~C~~C 43 (50)
T PRK00432 19 KNKFCPRCGSG---FMAEHLDRWHCGKC 43 (50)
T ss_pred ccCcCcCCCcc---hheccCCcEECCCc
Confidence 35689999973 33445588899888
No 249
>cd06962 NR_DBD_FXR DNA-binding domain of Farnesoid X receptor (FXR) family is composed of two C4-type zinc fingers. DNA-binding domain of Farnesoid X receptor (FXR) family is composed of two C4-type zinc fingers. Each zinc finger contains a group of four Cys residues which co-ordinates a single zinc atom. FXR interacts with specific DNA sites upstream of the target gene and modulates the rate of transcriptional initiation. FXR is a member of the nuclear receptor family of ligand activated transcription factors. Bile acids are endogenous ligands for FXRs. Upon binding of a ligand, FXR binds to FXR response element (FXRE), which is an inverted repeat of TGACCT spaced by one nucleotide, either as a monomer or as a heterodimer with retinoid X receptor (RXR), to regulate the expression of various genes involved in bile acid, lipid, and glucose metabolism. Like other members of the nuclear receptor (NR) superfamily of ligand-activated transcription factors, FXR has a central well conserved
Probab=26.35 E-value=22 Score=26.05 Aligned_cols=28 Identities=25% Similarity=0.672 Sum_probs=22.2
Q ss_pred CCcCCCCCCCCeEEecccceechhhHHHHhh
Q 021294 31 HCADCGSPDPKWVSLSTGVFICIKCSGIHRS 61 (314)
Q Consensus 31 ~C~dC~~~~p~w~s~~~g~~~C~~C~~~Hr~ 61 (314)
.|.=||.+.- ...||++.|..|++..|-
T Consensus 3 ~C~VCg~~a~---g~hyGv~sC~aCk~FFRR 30 (84)
T cd06962 3 LCVVCGDKAS---GYHYNALTCEGCKGFFRR 30 (84)
T ss_pred CCeecCCcCc---ceEECcceeecceeeeee
Confidence 4888887554 458999999999998763
No 250
>PF14909 SPATA6: Spermatogenesis-assoc protein 6
Probab=26.18 E-value=3.6e+02 Score=21.88 Aligned_cols=69 Identities=10% Similarity=0.122 Sum_probs=51.8
Q ss_pred CCCcEEEEEECCeEeeeeeecCCCCCcccceeEEEe-cC------------CCCcEEEEEEEcCCCCCCceeEEEEEeCc
Q 021294 225 TSDPYVILALGHQTVKTRVIKSNLNPVWNESLMLSI-PE------------NIPPLKVLVYDKDTFTTDDFMGDAEIDIQ 291 (314)
Q Consensus 225 ~~dPyv~v~l~~~~~kT~~~~~tlnP~w~e~~~f~v-~~------------~~~~L~i~v~d~d~~~~dd~iG~~~v~l~ 291 (314)
..|-|..|.+-++-.+|+......--.++|.|.|+- .. +.+.+.|+++.+.... .+.++..+-++.
T Consensus 19 ~~~vyL~v~~lg~~~~T~~~ppvFPllfhek~~FeK~F~~~~dp~~l~~~Le~e~~~iELiQl~~~~-g~iLA~ye~n~r 97 (140)
T PF14909_consen 19 KGDVYLSVCILGQYKRTRCLPPVFPLLFHEKFRFEKVFPNAVDPAQLADLLEDETVYIELIQLVPPA-GEILAYYEENTR 97 (140)
T ss_pred CCCEEEEEEEcccEeecccCCCcCCeeEeeEEEeEEEecCCCCHHHHHHHhhcCcEEEEEEEEeCCC-CcEEEEEecccc
Confidence 568899999989999998876655556889999863 11 3467889999876543 667888888877
Q ss_pred ccc
Q 021294 292 PLV 294 (314)
Q Consensus 292 ~l~ 294 (314)
+++
T Consensus 98 DfL 100 (140)
T PF14909_consen 98 DFL 100 (140)
T ss_pred ceE
Confidence 765
No 251
>PF01060 DUF290: Transthyretin-like family; InterPro: IPR001534 This new apparently nematode-specific protein family has been called family 2 []. The proteins show weak similarity to transthyretin (formerly called prealbumin) which transports thyroid hormones. The specific function of this protein is unknown.; GO: 0005615 extracellular space
Probab=25.96 E-value=1e+02 Score=22.01 Aligned_cols=28 Identities=25% Similarity=0.536 Sum_probs=22.6
Q ss_pred CCcEEEEEEEcCCCCCCceeEEEEEeCc
Q 021294 264 IPPLKVLVYDKDTFTTDDFMGDAEIDIQ 291 (314)
Q Consensus 264 ~~~L~i~v~d~d~~~~dd~iG~~~v~l~ 291 (314)
....+|++|+.+.+..|++|+.+..+-.
T Consensus 11 ~~~~~V~L~e~d~~~~Ddll~~~~Td~~ 38 (80)
T PF01060_consen 11 AKNVKVKLWEDDYFDPDDLLDETKTDSD 38 (80)
T ss_pred CCCCEEEEEECCCCCCCceeEEEEECCC
Confidence 3557799999998889999998877644
No 252
>KOG3507 consensus DNA-directed RNA polymerase, subunit RPB7.0 [Transcription]
Probab=25.72 E-value=27 Score=23.68 Aligned_cols=27 Identities=30% Similarity=0.659 Sum_probs=17.9
Q ss_pred CCCCCCCcCCCCCCCCeEEe-cccceechhhH
Q 021294 26 QPGNRHCADCGSPDPKWVSL-STGVFICIKCS 56 (314)
Q Consensus 26 ~~~N~~C~dC~~~~p~w~s~-~~g~~~C~~C~ 56 (314)
.+.--+|+|||+.+. + .--++-|-+|.
T Consensus 17 ~~miYiCgdC~~en~----lk~~D~irCReCG 44 (62)
T KOG3507|consen 17 ATMIYICGDCGQENT----LKRGDVIRCRECG 44 (62)
T ss_pred ccEEEEecccccccc----ccCCCcEehhhcc
Confidence 344468999998763 2 22467888883
No 253
>smart00834 CxxC_CXXC_SSSS Putative regulatory protein. CxxC_CXXC_SSSS represents a region of about 41 amino acids found in a number of small proteins in a wide range of bacteria. The region usually begins with the initiator Met and contains two CxxC motifs separated by 17 amino acids. One protein in this entry has been noted as a putative regulatory protein, designated FmdB. Most proteins in this entry have a C-terminal region containing highly degenerate sequence.
Probab=25.60 E-value=19 Score=21.95 Aligned_cols=27 Identities=30% Similarity=0.703 Sum_probs=18.8
Q ss_pred CCcCCCCCCCCeEEec-ccceechhhHH
Q 021294 31 HCADCGSPDPKWVSLS-TGVFICIKCSG 57 (314)
Q Consensus 31 ~C~dC~~~~p~w~s~~-~g~~~C~~C~~ 57 (314)
.|.+||.....|.++. -....|-.|.+
T Consensus 7 ~C~~Cg~~fe~~~~~~~~~~~~CP~Cg~ 34 (41)
T smart00834 7 RCEDCGHTFEVLQKISDDPLATCPECGG 34 (41)
T ss_pred EcCCCCCEEEEEEecCCCCCCCCCCCCC
Confidence 5888888666666554 45667888865
No 254
>cd06970 NR_DBD_PNR DNA-binding domain of the photoreceptor cell-specific nuclear receptor (PNR) is composed of two C4-type zinc fingers. DNA-binding domain of the photoreceptor cell-specific nuclear receptor (PNR) is composed of two C4-type zinc fingers. Each zinc finger contains a group of four Cys residues which co-ordinates a single zinc atom. PNR interacts with specific DNA sites upstream of the target gene and modulates the rate of transcriptional initiation. PNR is a member of the nuclear receptor superfamily of the ligand-activated transcription factors. PNR is expressed only in the outer layer of retinal photoreceptor cells. It may be involved in the signaling pathway regulating photoreceptor differentiation and/or maintenance. It most likely binds to DNA as a homodimer. Like other members of the nuclear receptor (NR) superfamily of ligand-activated transcription factors, PNR has a central well conserved DNA binding domain (DBD), a variable N-terminal domain, a flexible hing
Probab=24.80 E-value=25 Score=26.27 Aligned_cols=31 Identities=26% Similarity=0.686 Sum_probs=24.3
Q ss_pred CCCCCcCCCCCCCCeEEecccceechhhHHHHhh
Q 021294 28 GNRHCADCGSPDPKWVSLSTGVFICIKCSGIHRS 61 (314)
Q Consensus 28 ~N~~C~dC~~~~p~w~s~~~g~~~C~~C~~~Hr~ 61 (314)
-...|.=||.+.- ...||+..|..|.+..|-
T Consensus 5 p~~~C~VCg~~a~---g~hyGv~sC~aCk~FFRR 35 (92)
T cd06970 5 PGLLCRVCGDTSS---GKHYGIYACNGCSGFFKR 35 (92)
T ss_pred CCCCCeecCCcCc---ccEECccEEeeeeeEeee
Confidence 3456999997654 458999999999998763
No 255
>TIGR00598 rad14 DNA repair protein. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=24.70 E-value=14 Score=30.94 Aligned_cols=28 Identities=18% Similarity=0.463 Sum_probs=21.3
Q ss_pred CcCCCCCCC-CeEEecccceechhhHHHH
Q 021294 32 CADCGSPDP-KWVSLSTGVFICIKCSGIH 59 (314)
Q Consensus 32 C~dC~~~~p-~w~s~~~g~~~C~~C~~~H 59 (314)
|.+||...- .|.--+|++-||..|..-+
T Consensus 1 C~eCg~~~~D~~l~~~F~~~vC~~C~~~~ 29 (172)
T TIGR00598 1 CEECGKIFMDSYLFDHFDCAVCDNCRDKD 29 (172)
T ss_pred CccccchhhhHHHHHHCCChhhhhhhccc
Confidence 889998533 3445689999999998754
No 256
>PTZ00218 40S ribosomal protein S29; Provisional
Probab=24.69 E-value=36 Score=22.72 Aligned_cols=29 Identities=24% Similarity=0.596 Sum_probs=22.4
Q ss_pred CCCCCCcCCCCCCCCeEEecccceechhhHH
Q 021294 27 PGNRHCADCGSPDPKWVSLSTGVFICIKCSG 57 (314)
Q Consensus 27 ~~N~~C~dC~~~~p~w~s~~~g~~~C~~C~~ 57 (314)
+|-+.|.-||.+. =+--.||..+|-.|--
T Consensus 14 kGsr~C~vCg~~~--gliRkygL~~CRqCFR 42 (54)
T PTZ00218 14 KGSRQCRVCSNRH--GLIRKYGLNVCRQCFR 42 (54)
T ss_pred CCCCeeecCCCcc--hhhhhcCcchhhHHHH
Confidence 5779999999854 2334899999999964
No 257
>PF08274 PhnA_Zn_Ribbon: PhnA Zinc-Ribbon ; InterPro: IPR013987 The PhnA protein family includes the uncharacterised Escherichia coli protein PhnA and its homologues. The E. coli phnA gene is part of a large operon associated with alkylphosphonate uptake and carbon-phosphorus bond cleavage []. The protein is not related to the characterised phosphonoacetate hydrolase designated PhnA []. This entry represents the N-terminal domain of PhnA, which is predicted to form a zinc-ribbon.; PDB: 2AKL_A.
Probab=24.48 E-value=36 Score=19.79 Aligned_cols=23 Identities=26% Similarity=0.787 Sum_probs=11.7
Q ss_pred CCcCCCCCCCCeEEecccceechhhH
Q 021294 31 HCADCGSPDPKWVSLSTGVFICIKCS 56 (314)
Q Consensus 31 ~C~dC~~~~p~w~s~~~g~~~C~~C~ 56 (314)
.|--|++... | ..-.+|||.+|.
T Consensus 4 ~Cp~C~se~~-y--~D~~~~vCp~C~ 26 (30)
T PF08274_consen 4 KCPLCGSEYT-Y--EDGELLVCPECG 26 (30)
T ss_dssp --TTT------E--E-SSSEEETTTT
T ss_pred CCCCCCCcce-e--ccCCEEeCCccc
Confidence 4677777543 3 566799999995
No 258
>KOG3408 consensus U1-like Zn-finger-containing protein, probabl erole in RNA processing/splicing [RNA processing and modification]
Probab=24.41 E-value=25 Score=27.63 Aligned_cols=40 Identities=28% Similarity=0.535 Sum_probs=32.9
Q ss_pred cccceechhhHH---------HHhhcCCceeEEEEeccCCCCHHHHHHH
Q 021294 46 STGVFICIKCSG---------IHRSLGVHISKVLSVKLDEWTNEQVDAL 85 (314)
Q Consensus 46 ~~g~~~C~~C~~---------~Hr~lg~~~s~v~s~~~d~w~~~~v~~~ 85 (314)
-+|-|-|+.|+- .|..-.+|--|||.|.--..|.+|-+..
T Consensus 54 G~GqfyCi~CaRyFi~~~~l~~H~ktK~HKrRvK~l~~~PySQeeAe~A 102 (129)
T KOG3408|consen 54 GGGQFYCIECARYFIDAKALKTHFKTKVHKRRVKELREVPYSQEEAEAA 102 (129)
T ss_pred CCceeehhhhhhhhcchHHHHHHHhccHHHHHHHhcccCCccHHHHHHh
Confidence 469999999986 5776677888999999888999888765
No 259
>PF06827 zf-FPG_IleRS: Zinc finger found in FPG and IleRS; InterPro: IPR010663 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a zinc finger domain found at the C-terminal in both DNA glycosylase/AP lyase enzymes and in isoleucyl tRNA synthetase. In these two types of enzymes, the C-terminal domain forms a zinc finger. Some related proteins may not bind zinc. DNA glycosylase/AP lyase enzymes are involved in base excision repair of DNA damaged by oxidation or by mutagenic agents. These enzymes have both DNA glycosylase activity (3.2.2 from EC) and AP lyase activity (4.2.99.18 from EC) []. Examples include formamidopyrimidine-DNA glycosylases (Fpg; MutM) and endonuclease VIII (Nei). Formamidopyrimidine-DNA glycosylases (Fpg, MutM) is a trifunctional DNA base excision repair enzyme that removes a wide range of oxidation-damaged bases (N-glycosylase activity; 3.2.2.23 from EC) and cleaves both the 3'- and 5'-phosphodiester bonds of the resulting apurinic/apyrimidinic site (AP lyase activity; 4.2.99.18 from EC). Fpg has a preference for oxidised purines, excising oxidized purine bases such as 7,8-dihydro-8-oxoguanine (8-oxoG). ITs AP (apurinic/apyrimidinic) lyase activity introduces nicks in the DNA strand, cleaving the DNA backbone by beta-delta elimination to generate a single-strand break at the site of the removed base with both 3'- and 5'-phosphates. Fpg is a monomer composed of 2 domains connected by a flexible hinge []. The two DNA-binding motifs (a zinc finger and the helix-two-turns-helix motifs) suggest that the oxidized base is flipped out from double-stranded DNA in the binding mode and excised by a catalytic mechanism similar to that of bifunctional base excision repair enzymes []. Fpg binds one ion of zinc at the C terminus, which contains four conserved and essential cysteines []. Endonuclease VIII (Nei) has the same enzyme activities as Fpg above, but with a preference for oxidized pyrimidines, such as thymine glycol, 5,6-dihydrouracil and 5,6-dihydrothymine [, ]. An Fpg-type zinc finger is also found at the C terminus of isoleucyl tRNA synthetase (6.1.1.5 from EC) [, ]. This enzyme catalyses the attachment of isoleucine to tRNA(Ile). As IleRS can inadvertently accommodate and process structurally similar amino acids such as valine, to avoid such errors it has two additional distinct tRNA(Ile)-dependent editing activities. One activity is designated as 'pre-transfer' editing and involves the hydrolysis of activated Val-AMP. The other activity is designated 'post-transfer' editing and involves deacylation of mischarged Val-tRNA(Ile) []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003824 catalytic activity; PDB: 1K82_C 1Q39_A 2OQ4_B 2OPF_A 1K3X_A 1K3W_A 1Q3B_A 2EA0_A 1Q3C_A 2XZF_A ....
Probab=24.27 E-value=22 Score=20.32 Aligned_cols=28 Identities=14% Similarity=0.415 Sum_probs=15.7
Q ss_pred CCCcCCCCCCCCeEEecccceechhhHH
Q 021294 30 RHCADCGSPDPKWVSLSTGVFICIKCSG 57 (314)
Q Consensus 30 ~~C~dC~~~~p~w~s~~~g~~~C~~C~~ 57 (314)
+.|--|+..-+.=..-.-..++|..|..
T Consensus 2 ~~C~rC~~~~~~~~~~~r~~~~C~rCq~ 29 (30)
T PF06827_consen 2 EKCPRCWNYIEDIGINGRSTYLCPRCQK 29 (30)
T ss_dssp SB-TTT--BBEEEEETTEEEEE-TTTCC
T ss_pred CcCccCCCcceEeEecCCCCeECcCCcC
Confidence 3577787765554444667889988853
No 260
>PF13462 Thioredoxin_4: Thioredoxin; PDB: 3FEU_A 3HZ8_A 3DVW_A 3A3T_E 3GMF_A 1Z6M_A 3GYK_C 3BCK_A 3BD2_A 3BCI_A ....
Probab=24.09 E-value=48 Score=26.53 Aligned_cols=28 Identities=29% Similarity=0.503 Sum_probs=22.5
Q ss_pred CCCCCCeEEecccceechhhHHHHhhcC
Q 021294 36 GSPDPKWVSLSTGVFICIKCSGIHRSLG 63 (314)
Q Consensus 36 ~~~~p~w~s~~~g~~~C~~C~~~Hr~lg 63 (314)
|.++.....+-|+-|.|.-|+-.|+.++
T Consensus 8 G~~~a~~~v~~f~d~~Cp~C~~~~~~~~ 35 (162)
T PF13462_consen 8 GNPDAPITVTEFFDFQCPHCAKFHEELE 35 (162)
T ss_dssp S-TTTSEEEEEEE-TTSHHHHHHHHHHH
T ss_pred cCCCCCeEEEEEECCCCHhHHHHHHHHh
Confidence 5677888899999999999999998663
No 261
>cd06967 NR_DBD_TR2_like DNA-binding domain of the TR2 and TR4 (human testicular receptor 2 and 4) is composed of two C4-type zinc fingers. DNA-binding domain of the TR2 and TR4 (human testicular receptor 2 and 4) is composed of two C4-type zinc fingers. Each zinc finger contains a group of four Cys residues which coordinates a single zinc atom. TR2 and TR4 interact with specific DNA sites upstream of the target gene and modulate the rate of transcriptional initiation. TR4 and TR2 are orphan nuclear receptors; the physiological ligand is as yet unidentified. TR2 is abundantly expressed in the androgen-sensitive prostate. TR4 transcripts are expressed in many tissues, including central nervous system, adrenal gland, spleen, thyroid gland, and prostate. It has been shown that human TR2 binds to a wide spectrum of natural hormone response elements (HREs) with distinct affinities suggesting that TR2 may cross-talk with other gene expression regulation systems. The genes responding to TR2 or
Probab=23.66 E-value=23 Score=26.08 Aligned_cols=29 Identities=24% Similarity=0.600 Sum_probs=22.9
Q ss_pred CCCCcCCCCCCCCeEEecccceechhhHHHHh
Q 021294 29 NRHCADCGSPDPKWVSLSTGVFICIKCSGIHR 60 (314)
Q Consensus 29 N~~C~dC~~~~p~w~s~~~g~~~C~~C~~~Hr 60 (314)
...|.=||.+.-. ..||+..|..|.+..|
T Consensus 3 ~~~C~VCg~~~~g---~hyGv~sC~aC~~FFR 31 (87)
T cd06967 3 VELCVVCGDKASG---RHYGAVSCEGCKGFFK 31 (87)
T ss_pred CCCCeecCCcCCc---CEeCcceEeeeeeEee
Confidence 3458889975543 5899999999999875
No 262
>KOG4215 consensus Hepatocyte nuclear factor 4 and similar steroid hormone receptors [Transcription]
Probab=22.76 E-value=46 Score=31.34 Aligned_cols=31 Identities=29% Similarity=0.597 Sum_probs=25.5
Q ss_pred CCCCCCcCCCCCCCCeEEecccceechhhHHHHh
Q 021294 27 PGNRHCADCGSPDPKWVSLSTGVFICIKCSGIHR 60 (314)
Q Consensus 27 ~~N~~C~dC~~~~p~w~s~~~g~~~C~~C~~~Hr 60 (314)
..+..|+=||.+.. ---||..-|..|.|+-|
T Consensus 17 ~~~~~CaICGDkaT---GKHYGA~SCdGCKGFFR 47 (432)
T KOG4215|consen 17 GVAEFCAICGDKAT---GKHYGAISCDGCKGFFR 47 (432)
T ss_pred cccchhheeCCccc---ccccceeecCcchHHHH
Confidence 37899999998754 34689999999999765
No 263
>PF03604 DNA_RNApol_7kD: DNA directed RNA polymerase, 7 kDa subunit; InterPro: IPR006591 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Each class of RNA polymerase is assembled from 9 to 15 different polypeptides. Rbp10 (RNA polymerase CX) is a domain found in RNA polymerase subunit 10; present in RNA polymerase I, II and III.; GO: 0003677 DNA binding, 0003899 DNA-directed RNA polymerase activity, 0006351 transcription, DNA-dependent; PDB: 2PMZ_Z 3HKZ_X 2NVX_L 3S1Q_L 2JA6_L 3S17_L 3HOW_L 3HOV_L 3PO2_L 3HOZ_L ....
Probab=22.57 E-value=24 Score=20.81 Aligned_cols=22 Identities=23% Similarity=0.720 Sum_probs=12.5
Q ss_pred CCcCCCCCCCCeEEecccceechhh
Q 021294 31 HCADCGSPDPKWVSLSTGVFICIKC 55 (314)
Q Consensus 31 ~C~dC~~~~p~w~s~~~g~~~C~~C 55 (314)
.|++||+... .. .....-|..|
T Consensus 2 ~C~~Cg~~~~--~~-~~~~irC~~C 23 (32)
T PF03604_consen 2 ICGECGAEVE--LK-PGDPIRCPEC 23 (32)
T ss_dssp BESSSSSSE---BS-TSSTSSBSSS
T ss_pred CCCcCCCeeE--cC-CCCcEECCcC
Confidence 5888988644 11 2234567777
No 264
>TIGR00100 hypA hydrogenase nickel insertion protein HypA. In Hpylori, hypA mutant abolished hydrogenase activity and decrease in urease activity. Nickel supplementation in media restored urease activity and partial hydrogenase activity. HypA probably involved in inserting Ni in enzymes.
Probab=21.75 E-value=41 Score=26.14 Aligned_cols=46 Identities=28% Similarity=0.622 Sum_probs=27.3
Q ss_pred cCCCCCCCcCCCCCCCCeEEecccceechhhHHHH-hhc-CCceeEEEEeccC
Q 021294 25 RQPGNRHCADCGSPDPKWVSLSTGVFICIKCSGIH-RSL-GVHISKVLSVKLD 75 (314)
Q Consensus 25 ~~~~N~~C~dC~~~~p~w~s~~~g~~~C~~C~~~H-r~l-g~~~s~v~s~~~d 75 (314)
..|+--.|.+||.. ..+..-.+.|..|.+.. +-. |.- =+|++|.++
T Consensus 66 ~~p~~~~C~~Cg~~----~~~~~~~~~CP~Cgs~~~~i~~G~E-l~I~~ie~~ 113 (115)
T TIGR00100 66 DEPVECECEDCSEE----VSPEIDLYRCPKCHGIMLQVRAGKE-LNLKSIEVE 113 (115)
T ss_pred eeCcEEEcccCCCE----EecCCcCccCcCCcCCCcEEecCCe-EEEEEEEEE
Confidence 46778899999943 22322257899998754 211 221 266666553
No 265
>KOG1329 consensus Phospholipase D1 [Lipid transport and metabolism]
Probab=21.55 E-value=72 Score=33.61 Aligned_cols=75 Identities=16% Similarity=0.147 Sum_probs=56.5
Q ss_pred CCcEEEEEECCeE-eeeeeecCC-CCCcccceeEEEecCCCCcEEEEEEEcCCCCCCceeEEEEEeCcccccccccc
Q 021294 226 SDPYVILALGHQT-VKTRVIKSN-LNPVWNESLMLSIPENIPPLKVLVYDKDTFTTDDFMGDAEIDIQPLVTAARAC 300 (314)
Q Consensus 226 ~dPyv~v~l~~~~-~kT~~~~~t-lnP~w~e~~~f~v~~~~~~L~i~v~d~d~~~~dd~iG~~~v~l~~l~~~~~~~ 300 (314)
.++|+.+.+.... .+|....+. .+|.|.+.|.+........+.+.+-+.+..+....+|.+..++..+..+....
T Consensus 138 ~e~Ylt~~l~~~~~~~t~~~~~f~e~s~~~f~~~~~~~h~~g~v~~~~~~~~~~G~s~~w~~v~~s~~~~~~~~~~~ 214 (887)
T KOG1329|consen 138 LENYLTVVLHKARYRRTHVIYEFLENSRWSFSFDIGFAHKAGYVIFRVKGARVPGWSKRWGRVKISFLQYCSGHRIG 214 (887)
T ss_pred ccchheeeechhhhhchhhhhcccccchhhhhccccccccccEEEEeecCCccccceeEEEEeccchhhhhcccccc
Confidence 4889998886543 456555555 68999998877766666778888888777776788999999998888764333
No 266
>PF08792 A2L_zn_ribbon: A2L zinc ribbon domain; InterPro: IPR014900 This zinc ribbon protein is found associated with some viral A2L transcription factors [].
Probab=21.42 E-value=54 Score=19.46 Aligned_cols=28 Identities=21% Similarity=0.503 Sum_probs=19.8
Q ss_pred CCCCcCCCCCCCCeEEecccceechhhHHH
Q 021294 29 NRHCADCGSPDPKWVSLSTGVFICIKCSGI 58 (314)
Q Consensus 29 N~~C~dC~~~~p~w~s~~~g~~~C~~C~~~ 58 (314)
.+.|-.|++..--| .+-+..+|..|..+
T Consensus 3 ~~~C~~C~~~~i~~--~~~~~~~C~~Cg~~ 30 (33)
T PF08792_consen 3 LKKCSKCGGNGIVN--KEDDYEVCIFCGSS 30 (33)
T ss_pred ceEcCCCCCCeEEE--ecCCeEEcccCCcE
Confidence 45788888877433 56678889888654
No 267
>TIGR00280 L37a ribosomal protein L37a. This model finds eukaryotic ribosomal protein L37a and its archaeal orthologs. The nomeclature is tricky because eukaryotes have proteins called both L37 and L37a.
Probab=21.29 E-value=1e+02 Score=23.05 Aligned_cols=40 Identities=28% Similarity=0.546 Sum_probs=29.5
Q ss_pred cHHHHHHHHH-cCCCCCCCcCCCCCCCCeEEecccceechhhH
Q 021294 15 GPRARLENLL-RQPGNRHCADCGSPDPKWVSLSTGVFICIKCS 56 (314)
Q Consensus 15 ~~~~~~~~l~-~~~~N~~C~dC~~~~p~w~s~~~g~~~C~~C~ 56 (314)
..++.+++|- .+..--.|.-||...- --...||+-|..|.
T Consensus 20 slRK~v~kie~~q~a~y~CpfCgk~~v--kR~a~GIW~C~~C~ 60 (91)
T TIGR00280 20 KLRRQVKKIEIQQKAKYVCPFCGKKTV--KRGSTGIWTCRKCG 60 (91)
T ss_pred HHHHHHHHHHHHHhcCccCCCCCCCce--EEEeeEEEEcCCCC
Confidence 3566677665 4677889999996554 34567999999994
No 268
>PF06677 Auto_anti-p27: Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27); InterPro: IPR009563 The proteins in this entry are functionally uncharacterised and include several proteins that characterise Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27). It is thought that the potential association of anti-p27 with anti-centromere antibodies suggests that autoantigen p27 might play a role in mitosis [].
Probab=21.03 E-value=50 Score=20.70 Aligned_cols=25 Identities=36% Similarity=0.955 Sum_probs=16.9
Q ss_pred CCCCCcCCCCCCCCeEEecccceechhh
Q 021294 28 GNRHCADCGSPDPKWVSLSTGVFICIKC 55 (314)
Q Consensus 28 ~N~~C~dC~~~~p~w~s~~~g~~~C~~C 55 (314)
=+..|.+||.+--+ ..-|..+|..|
T Consensus 16 L~~~Cp~C~~PL~~---~k~g~~~Cv~C 40 (41)
T PF06677_consen 16 LDEHCPDCGTPLMR---DKDGKIYCVSC 40 (41)
T ss_pred hcCccCCCCCeeEE---ecCCCEECCCC
Confidence 46899999865322 23467778777
No 269
>PTZ00074 60S ribosomal protein L34; Provisional
Probab=20.73 E-value=71 Score=25.68 Aligned_cols=33 Identities=33% Similarity=0.763 Sum_probs=22.5
Q ss_pred cCCCCCCCcCCCCC-------CC----------CeEEecccceechhhHH
Q 021294 25 RQPGNRHCADCGSP-------DP----------KWVSLSTGVFICIKCSG 57 (314)
Q Consensus 25 ~~~~N~~C~dC~~~-------~p----------~w~s~~~g~~~C~~C~~ 57 (314)
+.+.--.|+|||.+ -| .-++=.||-.+|..|--
T Consensus 37 K~~~~pkC~~cg~~L~GI~~~Rp~e~~rlsK~~KtvsRaYGG~lC~~CVr 86 (135)
T PTZ00074 37 KKSSGPKCGDCGKVLAGIKALRPTEYKQLSRRERTVSRAYGGVLCHKCVR 86 (135)
T ss_pred cCCCCCCCCCCCCccCCccCCchHHHHHccccCCCccCCCccchhHHHHH
Confidence 34444679999965 12 23456789999999964
No 270
>smart00440 ZnF_C2C2 C2C2 Zinc finger. Nucleic-acid-binding motif in transcriptional elongation factor TFIIS and RNA polymerases.
Probab=20.53 E-value=72 Score=19.69 Aligned_cols=26 Identities=31% Similarity=0.948 Sum_probs=18.0
Q ss_pred CCcCCCCCCCCeEEecc--------cceechhhH
Q 021294 31 HCADCGSPDPKWVSLST--------GVFICIKCS 56 (314)
Q Consensus 31 ~C~dC~~~~p~w~s~~~--------g~~~C~~C~ 56 (314)
.|-.||..+..|..+-. -.++|..|.
T Consensus 2 ~Cp~C~~~~a~~~q~Q~RsaDE~mT~fy~C~~C~ 35 (40)
T smart00440 2 PCPKCGNREATFFQLQTRSADEPMTVFYVCTKCG 35 (40)
T ss_pred cCCCCCCCeEEEEEEcccCCCCCCeEEEEeCCCC
Confidence 58889988877764422 267888874
Done!