Query 021294
Match_columns 314
No_of_seqs 349 out of 2562
Neff 8.4
Searched_HMMs 29240
Date Mon Mar 25 15:35:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021294.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/021294hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2iqj_A Stromal membrane-associ 100.0 1.2E-46 4.3E-51 299.9 8.5 127 4-134 2-128 (134)
2 2crr_A Stromal membrane-associ 100.0 1.4E-45 4.8E-50 296.3 10.2 127 4-134 4-130 (141)
3 2olm_A Nucleoporin-like protei 100.0 4.7E-44 1.6E-48 287.1 5.2 124 11-137 7-131 (140)
4 3jue_A Arfgap with coiled-coil 100.0 9.9E-39 3.4E-43 299.7 9.8 128 8-136 24-152 (368)
5 2owa_A Arfgap-like finger doma 100.0 1.8E-38 6.1E-43 253.3 7.0 113 13-130 20-132 (138)
6 3lju_X ARF-GAP with dual PH do 100.0 2.3E-38 7.8E-43 298.2 8.2 123 12-136 17-139 (386)
7 3dwd_A ADP-ribosylation factor 100.0 4.1E-37 1.4E-41 245.3 10.4 123 4-132 13-144 (147)
8 2crw_A ARF GAP 3, ADP-ribosyla 100.0 2.3E-37 7.7E-42 249.4 7.1 90 14-104 14-104 (149)
9 2p57_A GTPase-activating prote 100.0 1.6E-35 5.5E-40 236.3 6.1 90 12-102 20-110 (144)
10 3sub_A ADP-ribosylation factor 100.0 6.4E-35 2.2E-39 235.8 6.0 91 14-105 6-97 (163)
11 2b0o_E UPLC1; arfgap, structur 100.0 3E-33 1E-37 255.7 11.7 120 13-133 26-146 (301)
12 1dcq_A PYK2-associated protein 100.0 2.5E-33 8.4E-38 253.4 9.9 119 14-133 2-121 (278)
13 3lvq_E ARF-GAP with SH3 domain 100.0 7.7E-33 2.6E-37 269.4 7.7 122 12-134 6-128 (497)
14 3o47_A ADP-ribosylation factor 100.0 3.9E-29 1.3E-33 231.2 11.2 91 12-103 20-110 (329)
15 2ep6_A MCTP2 protein; beta san 99.7 1.4E-17 4.7E-22 133.4 11.0 98 200-297 7-105 (133)
16 3kwu_A MUNC13-1; calcium bindi 99.7 5E-17 1.7E-21 132.5 14.0 96 199-294 10-117 (148)
17 2fk9_A Protein kinase C, ETA t 99.7 1.2E-17 4.2E-22 137.6 9.7 97 199-296 22-130 (157)
18 1wfj_A Putative elicitor-respo 99.7 2.3E-17 7.9E-22 132.5 8.5 95 201-295 5-101 (136)
19 2dmh_A Myoferlin; beta-sandwic 99.7 8.9E-17 3E-21 129.7 11.6 97 204-300 5-105 (140)
20 1gmi_A Protein kinase C, epsil 99.7 6.4E-17 2.2E-21 130.1 9.3 94 202-296 2-108 (136)
21 2b3r_A Phosphatidylinositol-4- 99.7 1.9E-16 6.6E-21 127.1 11.2 98 204-302 18-125 (134)
22 3m7f_B E3 ubiquitin-protein li 99.7 2.8E-16 9.7E-21 131.9 12.1 96 204-299 6-108 (176)
23 2d8k_A Synaptotagmin VII; exoc 99.7 3.2E-16 1.1E-20 126.6 11.4 102 204-306 24-133 (141)
24 3b7y_A E3 ubiquitin-protein li 99.7 3.8E-16 1.3E-20 127.9 11.9 96 203-298 17-119 (153)
25 1rsy_A Synaptotagmin I; calciu 99.7 2.3E-16 7.9E-21 129.3 10.2 100 204-303 40-146 (152)
26 2nq3_A Itchy homolog E3 ubiqui 99.7 3.3E-16 1.1E-20 131.3 11.1 93 204-297 34-127 (173)
27 1rlw_A Phospholipase A2, CALB 99.7 2E-16 6.7E-21 125.3 8.9 99 205-304 2-108 (126)
28 3fbk_A RGS3, RGP3, regulator o 99.7 2.1E-16 7.2E-21 129.7 9.3 93 203-295 24-124 (153)
29 3pyc_A E3 ubiquitin-protein li 99.7 7E-16 2.4E-20 123.2 12.1 88 206-294 5-98 (132)
30 3f04_A Synaptotagmin-1; C2A, c 99.7 2.8E-16 9.5E-21 127.3 9.7 99 204-302 32-137 (143)
31 3rdl_A Protein kinase C alpha 99.7 1.6E-16 5.4E-21 127.6 8.0 94 204-297 14-115 (137)
32 1ugk_A Synaptotagmin IV, KIAA1 99.7 3.9E-16 1.3E-20 125.7 10.1 101 204-304 20-129 (138)
33 2z0u_A WW domain-containing pr 99.7 1.1E-16 3.6E-21 132.0 6.8 92 204-295 41-142 (155)
34 2chd_A Rabphilin-3A, exophilin 99.6 3.5E-16 1.2E-20 126.5 8.8 95 204-298 27-131 (142)
35 1v27_A Regulating synaptic mem 99.6 4.2E-16 1.4E-20 125.7 9.1 106 205-312 20-137 (141)
36 1a25_A CALB, protein kinase C 99.6 3.3E-16 1.1E-20 127.8 8.4 92 205-296 30-129 (149)
37 2q3x_A Regulating synaptic mem 99.6 3.8E-16 1.3E-20 130.6 8.9 100 204-303 28-135 (171)
38 2enp_A B/K protein; C2 type 1, 99.6 6.3E-16 2.2E-20 125.8 9.3 104 204-308 24-141 (147)
39 2bwq_A Regulating synaptic mem 99.6 8.2E-16 2.8E-20 122.1 9.5 92 205-296 17-120 (129)
40 3fdw_A Synaptotagmin-like prot 99.6 3.4E-16 1.2E-20 127.6 7.2 99 205-303 22-130 (148)
41 1wfm_A Synaptotagmin XIII; C2 99.6 2.7E-15 9.3E-20 120.9 12.3 99 205-307 25-131 (138)
42 2dmg_A KIAA1228 protein; beta- 99.6 1.9E-15 6.3E-20 122.2 11.1 102 205-306 23-134 (142)
43 1rh8_A Piccolo protein; beta-s 99.6 3.3E-16 1.1E-20 126.6 6.0 96 205-300 17-131 (142)
44 3n5a_A Synaptotagmin-7; calciu 99.6 9E-16 3.1E-20 123.2 8.3 94 204-297 14-116 (138)
45 2cm5_A Rabphilin-3A; protein t 99.6 3.1E-15 1.1E-19 124.3 10.9 91 204-294 35-134 (166)
46 1tjx_A Similar to synaptotagmi 99.6 2.6E-15 8.9E-20 123.8 9.5 90 204-293 23-121 (159)
47 1w15_A Synaptotagmin IV; metal 99.6 3.2E-15 1.1E-19 122.4 9.7 90 204-293 28-126 (153)
48 2cjt_A UNC-13 homolog A, MUNC1 99.6 4.3E-15 1.5E-19 118.8 8.9 89 204-297 3-92 (131)
49 2cjs_A UNC-13 homolog A, MUNC1 99.5 1.8E-14 6.2E-19 120.0 9.0 89 204-297 12-101 (167)
50 3nsj_A Perforin-1; pore formin 99.5 4.7E-14 1.6E-18 137.4 12.5 88 204-292 392-482 (540)
51 2r83_A Synaptotagmin-1; C2A-C2 99.5 7.4E-14 2.5E-18 125.6 11.0 95 204-298 17-118 (284)
52 3jzy_A Intersectin 2; C2 domai 99.5 7.3E-14 2.5E-18 135.8 11.5 95 204-298 385-481 (510)
53 1dqv_A Synaptotagmin III; beta 99.5 1.5E-13 5.2E-18 124.6 10.6 92 204-295 18-117 (296)
54 2r83_A Synaptotagmin-1; C2A-C2 99.4 3.5E-13 1.2E-17 121.1 9.8 90 205-294 149-247 (284)
55 3l9b_A Otoferlin; C2-domain, b 99.4 1.3E-12 4.6E-17 104.2 9.1 89 207-299 22-114 (144)
56 1djx_A PLC-D1, phosphoinositid 99.4 2.3E-12 7.8E-17 128.0 12.1 95 204-298 495-599 (624)
57 1cjy_A CPLA2, protein (cytosol 99.4 5.8E-13 2E-17 133.8 7.7 98 204-302 16-121 (749)
58 1dqv_A Synaptotagmin III; beta 99.3 3.4E-13 1.2E-17 122.3 4.4 91 205-295 151-250 (296)
59 3pfq_A PKC-B, PKC-beta, protei 99.2 3.7E-11 1.3E-15 120.7 8.1 93 205-297 171-271 (674)
60 3bxj_A RAS GTPase-activating p 99.2 3.3E-12 1.1E-16 123.4 0.1 99 203-305 8-114 (483)
61 3qr0_A Phospholipase C-beta (P 99.0 8.9E-10 3.1E-14 111.8 11.7 88 205-299 649-747 (816)
62 3ohm_B 1-phosphatidylinositol- 99.0 8.6E-10 2.9E-14 112.6 9.9 88 206-300 725-822 (885)
63 2zkm_X 1-phosphatidylinositol- 98.9 2.6E-09 8.8E-14 108.7 10.6 89 204-299 676-775 (799)
64 1yrk_A NPKC-delta, protein kin 98.2 8.6E-06 2.9E-10 63.1 10.2 87 205-296 5-97 (126)
65 2enj_A NPKC-theta, protein kin 98.2 7.3E-06 2.5E-10 64.3 8.2 89 203-296 7-102 (138)
66 3l4c_A Dedicator of cytokinesi 89.9 5 0.00017 33.9 11.9 55 237-291 77-138 (220)
67 1gnf_A Transcription factor GA 89.4 0.3 1E-05 30.6 3.0 39 27-65 2-41 (46)
68 2vut_I AREA, nitrogen regulato 87.5 0.69 2.4E-05 28.5 3.7 35 30-64 2-37 (43)
69 4gat_A Nitrogen regulatory pro 86.3 0.93 3.2E-05 30.7 4.2 38 27-64 7-45 (66)
70 3dfx_A Trans-acting T-cell-spe 85.2 0.64 2.2E-05 31.2 2.9 39 26-64 4-43 (63)
71 4hc9_A Trans-acting T-cell-spe 81.1 1.4 4.7E-05 33.4 3.7 35 29-63 5-40 (115)
72 2wxf_A Phosphatidylinositol-4, 80.7 9 0.00031 39.5 10.6 88 203-292 214-323 (940)
73 1ffk_W Ribosomal protein L37AE 79.2 1.6 5.4E-05 30.2 3.1 41 14-56 11-52 (73)
74 1u5k_A Hypothetical protein; O 78.6 0.92 3.2E-05 38.9 2.3 47 26-88 147-193 (244)
75 3hhm_A Phosphatidylinositol-4, 76.8 12 0.0004 39.2 10.0 89 203-292 352-454 (1091)
76 3g9m_A Glucocorticoid receptor 70.0 2.9 9.8E-05 30.1 2.7 30 28-60 1-30 (90)
77 1e7u_A Phosphatidylinositol 3- 69.9 23 0.00078 36.6 10.3 91 203-293 215-330 (961)
78 4hn5_A Glucocorticoid receptor 69.5 3.3 0.00011 31.4 3.0 33 25-60 25-57 (117)
79 2kae_A GATA-type transcription 69.5 1.8 6.2E-05 29.7 1.4 37 28-65 7-46 (71)
80 1hcq_A Protein (estrogen recep 68.9 4.1 0.00014 28.9 3.3 32 27-61 2-33 (84)
81 1vq8_Z 50S ribosomal protein L 66.6 1.8 6.3E-05 30.7 1.0 40 15-56 12-52 (83)
82 1r4i_A Androgen receptor; AR, 65.1 4.2 0.00014 30.2 2.8 32 27-61 5-36 (105)
83 2ebl_A COUP transcription fact 63.8 3.8 0.00013 29.4 2.3 31 27-60 5-35 (89)
84 2han_B Ecdysone receptor; tran 63.3 6.3 0.00022 29.9 3.5 30 28-60 7-36 (119)
85 2a66_A Orphan nuclear receptor 63.3 3.3 0.00011 31.2 1.9 32 26-60 6-37 (113)
86 2han_A Protein ultraspiracle; 62.8 5.9 0.0002 28.6 3.1 30 28-60 9-38 (93)
87 2nll_B Protein (thyroid hormon 62.6 5.1 0.00017 29.6 2.8 29 30-61 2-30 (103)
88 1d4u_A Nucleotide excision rep 61.8 1.2 4E-05 33.5 -0.8 31 28-58 4-35 (111)
89 1cit_A NGFI-B, protein (orphan 60.4 7.8 0.00027 27.7 3.4 28 31-61 2-29 (89)
90 1dsz_A RAR-alpha, retinoic aci 60.3 6.2 0.00021 28.1 2.8 28 30-60 5-32 (86)
91 1a6y_A Orphan nuclear receptor 59.1 5.9 0.0002 28.7 2.6 31 27-60 5-35 (94)
92 4hc9_A Trans-acting T-cell-spe 56.0 14 0.00049 27.7 4.4 39 27-65 57-96 (115)
93 1tjl_A DNAK suppressor protein 55.8 11 0.00036 29.9 3.8 35 26-60 108-143 (151)
94 1kb2_A Vitamin D3 receptor; VD 55.3 7.5 0.00026 29.0 2.7 29 29-60 6-34 (110)
95 3cc2_Z 50S ribosomal protein L 53.2 2.8 9.4E-05 31.6 -0.1 40 15-56 45-85 (116)
96 1ynw_B Retinoic acid receptor 53.0 6.6 0.00023 28.7 2.0 30 29-61 3-32 (99)
97 1dl6_A Transcription factor II 53.0 6.4 0.00022 25.7 1.7 26 30-56 12-37 (58)
98 1dsz_B RXR-alpha, retinoic aci 52.9 5.5 0.00019 28.3 1.5 31 28-61 4-34 (85)
99 1lo1_A Steroid hormone recepto 52.5 5.1 0.00017 29.3 1.3 29 29-60 4-32 (98)
100 2kgo_A Uncharacterized protein 50.0 7 0.00024 29.1 1.7 32 29-60 56-88 (108)
101 3cbb_A HNF-4-alpha, hepatocyte 48.2 11 0.00038 26.2 2.5 27 31-60 2-28 (78)
102 3dzy_D Peroxisome proliferator 47.0 11 0.00038 34.9 3.0 31 27-60 48-78 (419)
103 2y3a_A Phosphatidylinositol-4, 43.6 41 0.0014 35.2 6.8 88 203-292 350-469 (1092)
104 2yrb_A Protein fantom; beta sa 36.8 89 0.003 24.7 6.4 90 206-297 18-120 (156)
105 1ovx_A ATP-dependent CLP prote 35.4 36 0.0012 22.9 3.3 28 30-58 19-49 (67)
106 3dzy_A Retinoic acid receptor 33.5 13 0.00045 35.0 1.2 30 28-60 136-165 (467)
107 3k1f_M Transcription initiatio 33.5 25 0.00086 28.5 2.6 29 30-58 22-51 (197)
108 1pft_A TFIIB, PFTFIIBN; N-term 33.3 20 0.00068 22.2 1.7 26 30-56 6-31 (50)
109 2ds5_A CLPX, ATP-dependent CLP 31.9 53 0.0018 20.7 3.5 30 28-58 10-42 (51)
110 3j21_g 50S ribosomal protein L 30.7 11 0.00038 23.9 0.1 23 28-56 13-35 (51)
111 3izc_m 60S ribosomal protein R 30.7 32 0.0011 24.7 2.5 38 16-55 22-60 (92)
112 3j21_i 50S ribosomal protein L 30.2 23 0.00078 24.9 1.7 39 16-56 21-60 (83)
113 3a1b_A DNA (cytosine-5)-methyl 28.1 44 0.0015 26.5 3.2 49 10-58 15-65 (159)
114 3j21_d 50S ribosomal protein L 28.0 22 0.00075 25.4 1.3 30 27-57 31-77 (89)
115 4bbr_M Transcription initiatio 27.8 29 0.00098 31.3 2.4 27 31-57 23-50 (345)
116 2uzg_A Ubiquitin carboxyl-term 27.6 40 0.0014 24.3 2.7 34 27-60 23-63 (97)
117 3c5k_A HD6, histone deacetylas 27.5 48 0.0016 24.5 3.2 31 29-59 24-58 (109)
118 1qyp_A RNA polymerase II; tran 27.3 20 0.00067 23.0 0.9 28 29-56 15-50 (57)
119 3iz5_m 60S ribosomal protein L 24.6 33 0.0011 24.6 1.7 38 16-55 22-60 (92)
120 2g45_A Ubiquitin carboxyl-term 22.7 46 0.0016 25.4 2.3 26 27-52 32-57 (129)
121 2kq9_A DNAK suppressor protein 20.6 36 0.0012 25.2 1.3 32 26-57 78-110 (112)
122 3k7a_M Transcription initiatio 20.5 30 0.001 31.1 1.0 30 30-59 22-52 (345)
No 1
>2iqj_A Stromal membrane-associated protein 1-like; zinc, structural genomics, structural genomics consortium, SGC, protein transport; 1.90A {Homo sapiens}
Probab=100.00 E-value=1.2e-46 Score=299.89 Aligned_cols=127 Identities=46% Similarity=0.836 Sum_probs=109.4
Q ss_pred CCCCCCCCCCCcHHHHHHHHHcCCCCCCCcCCCCCCCCeEEecccceechhhHHHHhhcCCceeEEEEeccCCCCHHHHH
Q 021294 4 QHANSDPKNVSGPRARLENLLRQPGNRHCADCGSPDPKWVSLSTGVFICIKCSGIHRSLGVHISKVLSVKLDEWTNEQVD 83 (314)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~l~~~~~N~~C~dC~~~~p~w~s~~~g~~~C~~C~~~Hr~lg~~~s~v~s~~~d~w~~~~v~ 83 (314)
.|+..++++.+.++++|++|++.|+|+.|||||+++|+|||+|||||||++|||+||+||+|||+||||+||+|++++|+
T Consensus 2 ~m~~~~~~~~e~~~~~l~~L~~~p~N~~CaDCg~~~P~WaS~n~GvfiC~~CsgiHR~lG~hiS~VkSl~ld~w~~~~l~ 81 (134)
T 2iqj_A 2 SMTGKSVKDVDRYQAVLANLLLEEDNKFCADCQSKGPRWASWNIGVFICIRCAGIHRNLGVHISRVKSVNLDQWTQEQIQ 81 (134)
T ss_dssp -----------CCHHHHHHHTTSGGGGBCTTTCCBSCCEEETTTTEEECHHHHHHHHHHCTTTCCEEETTTSCCCHHHHH
T ss_pred CcccccHhHHHHHHHHHHHHHcCcCCCcCCcCcCCCCCeEEecCCEEEhHhhhHHHhcCCCCCCceeeccccCCCHHHHH
Confidence 36677788999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcchhHHHHHHhhhCCCCCCCCCCCCCHHHHHHHHhcccccceeecc
Q 021294 84 ALAEMGGNIAVNKKYEAYTPGNLKKPSPNSFIDERSDFIRRKYEKLEFFNF 134 (314)
Q Consensus 84 ~~~~~gGN~~~n~~~e~~~~~~~~kp~~~~~~~~r~~fI~~KY~~~~f~~~ 134 (314)
.|+ .+||..+|++||+++|+.+.+|.++ +.+++||++||++++|+.+
T Consensus 82 ~m~-~~GN~~an~~~e~~lp~~~~~P~~~---~~~e~fIr~KY~~k~f~~~ 128 (134)
T 2iqj_A 82 CMQ-EMGNGKANRLYEAYLPETFRRPQID---PAVEGFIRDKYEKKKYMDR 128 (134)
T ss_dssp HHH-TCHHHHHHHHHTTTCCSSCCCCCSH---HHHHHHHHHHHTSCTTCCT
T ss_pred HHH-HHchHHHHHHHHhcCCccCCCCCch---HHHHHHHHHHHhCCeeeCC
Confidence 995 5699999999999999887777653 5688999999999999974
No 2
>2crr_A Stromal membrane-associated protein SMAP1B; arfgap domain, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=100.00 E-value=1.4e-45 Score=296.32 Aligned_cols=127 Identities=43% Similarity=0.799 Sum_probs=116.8
Q ss_pred CCCCCCCCCCCcHHHHHHHHHcCCCCCCCcCCCCCCCCeEEecccceechhhHHHHhhcCCceeEEEEeccCCCCHHHHH
Q 021294 4 QHANSDPKNVSGPRARLENLLRQPGNRHCADCGSPDPKWVSLSTGVFICIKCSGIHRSLGVHISKVLSVKLDEWTNEQVD 83 (314)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~l~~~~~N~~C~dC~~~~p~w~s~~~g~~~C~~C~~~Hr~lg~~~s~v~s~~~d~w~~~~v~ 83 (314)
+-+....+.++..+++|++|++.|+|+.|||||+++|+|||+|||||||++||||||.||+|||+||||+||+|++++|+
T Consensus 4 ~~~~~~~~~~e~~~~~l~~L~~~p~N~~CaDCga~~P~WaS~n~GvfiC~~CsgiHR~LG~hiS~VkSl~ld~w~~~~l~ 83 (141)
T 2crr_A 4 GSSGKAQKLNEQHQLILSKLLREEDNKYCADCEAKGPRWASWNIGVFICIRCAGIHRNLGVHISRVKSVNLDQWTAEQIQ 83 (141)
T ss_dssp CCCCCTTTTTTCHHHHHHHHHHSGGGSSCSSSCCSSCCSEETTTTEECCHHHHHHHHHHCTTTCCCBCSSSSCCCHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHHHhCccCCcCCCCCCCCCCeEEeccCeEEhhhhhHhHhcCCCCCCeeeECCCCCCCHHHHH
Confidence 34456677888999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcchhHHHHHHhhhCCCCCCCCCCCCCHHHHHHHHhcccccceeecc
Q 021294 84 ALAEMGGNIAVNKKYEAYTPGNLKKPSPNSFIDERSDFIRRKYEKLEFFNF 134 (314)
Q Consensus 84 ~~~~~gGN~~~n~~~e~~~~~~~~kp~~~~~~~~r~~fI~~KY~~~~f~~~ 134 (314)
.|+. +||..+|++||+++|+.+.+|.++ +.+++||++||++++|+.+
T Consensus 84 ~m~~-~GN~~an~~~e~~lp~~~~~P~~~---~~~e~fIr~KY~~k~f~~~ 130 (141)
T 2crr_A 84 CMQD-MGNTKARLLYEANLPENFRRPQTD---QAVEFFIRDKYEKKKYYDK 130 (141)
T ss_dssp HHHH-THHHHHHHHGGGSCCTTCCCCCSH---HHHHHHHHHHHTSCTTCCC
T ss_pred HHHH-HccHHHHHHHHhcCCcccCCCCch---HHHHHHHHHHHhcCcccCC
Confidence 9976 599999999999999887777653 5688999999999999963
No 3
>2olm_A Nucleoporin-like protein RIP; arfgap, GTPase-activating protein, REV-interacting protein, human immunodeficiency virus, AIDS, structural genomics; 1.48A {Homo sapiens} PDB: 2d9l_A
Probab=100.00 E-value=4.7e-44 Score=287.12 Aligned_cols=124 Identities=26% Similarity=0.485 Sum_probs=110.2
Q ss_pred CCCCcHHHHHHHHHcCCCCCCCcCCCCCCCCeEEecccceechhhHHHHhhcCCceeEEEEeccCCCCHHHHHHHHHhcc
Q 021294 11 KNVSGPRARLENLLRQPGNRHCADCGSPDPKWVSLSTGVFICIKCSGIHRSLGVHISKVLSVKLDEWTNEQVDALAEMGG 90 (314)
Q Consensus 11 ~~~~~~~~~~~~l~~~~~N~~C~dC~~~~p~w~s~~~g~~~C~~C~~~Hr~lg~~~s~v~s~~~d~w~~~~v~~~~~~gG 90 (314)
++++.++++|++|++.|+|+.|||||+++|+|||+|||||||++||||||+||+| |+|+||+||+|++++|+.|+. ||
T Consensus 7 ~~~e~~~~~l~~l~~~p~N~~CaDCg~~~P~WaS~n~GvfiC~~CsgiHR~LG~~-s~VrSl~ld~w~~~~l~~m~~-~G 84 (140)
T 2olm_A 7 KQEEKHLKMLRDMTGLPHNRKCFDCDQRGPTYVNMTVGSFVCTSCSGSLRGLNPP-HRVKSISMTTFTQQEIEFLQK-HG 84 (140)
T ss_dssp HHHHHHHHHHHHHHTSGGGGSCTTTCSSCCCEEETTTTEEECHHHHHHHTTSSSC-CCEEETTTCCCCHHHHHHHHH-CH
T ss_pred HHHHHHHHHHHHHhcCcCCCcCCCCCCCCCCceeeccCEEEchhccchhccCCCc-ceeeecCCCCCCHHHHHHHHH-hc
Confidence 4556789999999999999999999999999999999999999999999999997 999999999999999999965 69
Q ss_pred hhHHHHHHhhhCCCC-CCCCCCCCCHHHHHHHHhcccccceeeccccc
Q 021294 91 NIAVNKKYEAYTPGN-LKKPSPNSFIDERSDFIRRKYEKLEFFNFDEQ 137 (314)
Q Consensus 91 N~~~n~~~e~~~~~~-~~kp~~~~~~~~r~~fI~~KY~~~~f~~~~~~ 137 (314)
|..+|++||+++++. ..+|.+. +.+.+++||++||++++|+.+..+
T Consensus 85 N~~an~~~e~~~~~~~~~~P~~~-d~~~~~~fIr~KYe~k~f~~~~~~ 131 (140)
T 2olm_A 85 NEVCKQIWLGLFDDRSSAIPDFR-DPQKVKEFLQEKYEKKRWYVPPEQ 131 (140)
T ss_dssp HHHHHHHHTTTCCTTTSCCCCTT-CHHHHHHHHHHHHTSCTTCCCHHH
T ss_pred cHHHHHHHHhhCCcccCCCCCCC-CHHHHHHHHHHHHcCCeeeCCccc
Confidence 999999999999753 3344433 356788999999999999986555
No 4
>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A
Probab=100.00 E-value=9.9e-39 Score=299.66 Aligned_cols=128 Identities=39% Similarity=0.743 Sum_probs=113.9
Q ss_pred CCCCCCCcHHHHHHHHHcCCCCCCCcCCCCCCCCeEEecccceechhhHHHHhhcCCceeEEEEeccCCCCHHHHHHHHH
Q 021294 8 SDPKNVSGPRARLENLLRQPGNRHCADCGSPDPKWVSLSTGVFICIKCSGIHRSLGVHISKVLSVKLDEWTNEQVDALAE 87 (314)
Q Consensus 8 ~~~~~~~~~~~~~~~l~~~~~N~~C~dC~~~~p~w~s~~~g~~~C~~C~~~Hr~lg~~~s~v~s~~~d~w~~~~v~~~~~ 87 (314)
++-+++++.+++|+.|++.|+|+.|||||+++|+|||+|||||||++||||||+||+|||+||||+||.|++++|+.|+.
T Consensus 24 ~~~~~~~~~~~~~~~~~~~~~n~~c~dc~~~~p~w~s~~~g~~~c~~c~~~hr~lg~~~s~v~s~~~d~w~~~~~~~~~~ 103 (368)
T 3jue_A 24 ARGREPGGVGHVVAQVQSVDGNAQCCDCREPAPEWASINLGVTLCIQCSGIHRSLGVHFSKVRSLTLDSWEPELVKLMCE 103 (368)
T ss_dssp --------CCCHHHHHHTSTTTTBCTTTCCBSCCEEETTTTEEECHHHHHHHHHHCTTTCCEEETTTSCCCHHHHHHHHH
T ss_pred cchhhhhHHHHHHHHHHcCCCcCcCCCCCCCCCCeEEecCCeEEcHhHHHHHhccCCCcCeeEEeecccccHHHHHHHHH
Confidence 45677788889999999999999999999999999999999999999999999999999999999999999999999976
Q ss_pred hcchhHHHHHHhhhCCC-CCCCCCCCCCHHHHHHHHhcccccceeecccc
Q 021294 88 MGGNIAVNKKYEAYTPG-NLKKPSPNSFIDERSDFIRRKYEKLEFFNFDE 136 (314)
Q Consensus 88 ~gGN~~~n~~~e~~~~~-~~~kp~~~~~~~~r~~fI~~KY~~~~f~~~~~ 136 (314)
. ||..+|++||+.+++ ...||.|+++.+.|++||++||++++|+...+
T Consensus 104 ~-gn~~~n~~~e~~~~~~~~~kp~~~~~~~~re~fIr~KY~~k~f~~~l~ 152 (368)
T 3jue_A 104 L-GNVIINQIYEARVEAMAVKKPGPSCSRQEKEAWIHAKYVEKKFLTKLP 152 (368)
T ss_dssp S-CHHHHHHHHTTTTTTTTCCCCCTTSCHHHHHHHHHHHHTSCTTCCSCC
T ss_pred H-ccHHHHHHHHhhcccccCcCCCCCCCHHHHHHHHHHHHHhhcccccch
Confidence 5 999999999999986 35799999999999999999999999997544
No 5
>2owa_A Arfgap-like finger domain containing protein; zinc finger protein, cysteine-rich motif, GTPase activation; 2.00A {Cryptosporidium parvum iowa II}
Probab=100.00 E-value=1.8e-38 Score=253.25 Aligned_cols=113 Identities=34% Similarity=0.533 Sum_probs=97.4
Q ss_pred CCcHHHHHHHHHcCCCCCCCcCCCCCCCCeEEecccceechhhHHHHhhcCCceeEEEEeccCCCCHHHHHHHHHhcchh
Q 021294 13 VSGPRARLENLLRQPGNRHCADCGSPDPKWVSLSTGVFICIKCSGIHRSLGVHISKVLSVKLDEWTNEQVDALAEMGGNI 92 (314)
Q Consensus 13 ~~~~~~~~~~l~~~~~N~~C~dC~~~~p~w~s~~~g~~~C~~C~~~Hr~lg~~~s~v~s~~~d~w~~~~v~~~~~~gGN~ 92 (314)
++..+++++.|++.|+|+.|||||+++|+|||+|||||||++|||+||+||+|||+||||+||+|++++|+.|+ .|||.
T Consensus 20 ~~~~~~l~~~l~~~p~N~~CaDCga~~P~WaS~n~GvfiC~~CsgiHR~LG~hiS~VrSl~lD~w~~~~l~~m~-~~GN~ 98 (138)
T 2owa_A 20 DKLRDNFFQIVRNRPENRTCFDCESRNPTWLSLSFAVFICLNCSSDHRKMGVHISFVRSSDLDKFTPIQLVRMD-IGGNG 98 (138)
T ss_dssp HHHHHHHHHHHHHSGGGGBCTTTCCBSCCEEETTTTEEECHHHHHHHHTTCTTTCCEEETTTSCCCHHHHHHHH-HCCHH
T ss_pred HHHHHHHHHHHHcCcCCCcCCCCcCCCCCeEEecCCEEEhHhhhHHHhCCCCCCCeeeecCcCcCCHHHHHHHH-hhccH
Confidence 34556777789999999999999999999999999999999999999999999999999999999999999996 47999
Q ss_pred HHHHHHhhhCCCCCCCCCCCCCHHHHHHHHhcccccce
Q 021294 93 AVNKKYEAYTPGNLKKPSPNSFIDERSDFIRRKYEKLE 130 (314)
Q Consensus 93 ~~n~~~e~~~~~~~~kp~~~~~~~~r~~fI~~KY~~~~ 130 (314)
.+|++||+..... | +.+..+....|+.++|+++.
T Consensus 99 ~an~~~e~~~~~~---~-~~~~~~kY~s~~a~~Y~~kL 132 (138)
T 2owa_A 99 RARNYFKQVLGVN---F-SPKTKEYASSICGRQYKQIL 132 (138)
T ss_dssp HHHHHHHHHTCTT---C-CGGGCHHHHSHHHHHHHHHH
T ss_pred HHHHHHHHHcCCC---C-CCCHHHHHhhHHHHHHHHHH
Confidence 9999999965321 1 12234556789999999874
No 6
>3lju_X ARF-GAP with dual PH domain-containing protein 1; structural genomics consortium, GTPase activation, SGC, binding, nucleus, phosphoprotein; HET: IP9; 1.70A {Homo sapiens} PDB: 3feh_A* 3fm8_C 3mdb_C*
Probab=100.00 E-value=2.3e-38 Score=298.25 Aligned_cols=123 Identities=43% Similarity=0.829 Sum_probs=115.8
Q ss_pred CCCcHHHHHHHHHcCCCCCCCcCCCCCCCCeEEecccceechhhHHHHhhcCCceeEEEEeccCCCCHHHHHHHHHhcch
Q 021294 12 NVSGPRARLENLLRQPGNRHCADCGSPDPKWVSLSTGVFICIKCSGIHRSLGVHISKVLSVKLDEWTNEQVDALAEMGGN 91 (314)
Q Consensus 12 ~~~~~~~~~~~l~~~~~N~~C~dC~~~~p~w~s~~~g~~~C~~C~~~Hr~lg~~~s~v~s~~~d~w~~~~v~~~~~~gGN 91 (314)
+.+.++++|++|++.|+|+.|||||+++|+|||+|+|||||++||||||+| +|||+||||+||.|++++|+.|+. +||
T Consensus 17 q~~~~~~~l~~l~~~~~N~~C~dC~~~~p~w~s~~~g~~~C~~Csg~hr~l-~his~v~s~~ld~w~~~~~~~~~~-~gN 94 (386)
T 3lju_X 17 QGKERRRAVLELLQRPGNARCADCGAPDPDWASYTLGVFICLSCSGIHRNI-PQVSKVKSVRLDAWEEAQVEFMAS-HGN 94 (386)
T ss_dssp HHHHHHHHHHHHTTSGGGSBCTTTCCBSCCEEETTTTEEECHHHHHHHHTC-TTTCCEEETTTSCCCHHHHHHHHH-SSH
T ss_pred hhhHHHHHHHHHhcCcCCCcCccCCCCCCCeEEecccEEEhhhhchHhhCC-CccceeeeecccCCCHHHHHHHHH-hcc
Confidence 345678999999999999999999999999999999999999999999999 999999999999999999999976 599
Q ss_pred hHHHHHHhhhCCCCCCCCCCCCCHHHHHHHHhcccccceeecccc
Q 021294 92 IAVNKKYEAYTPGNLKKPSPNSFIDERSDFIRRKYEKLEFFNFDE 136 (314)
Q Consensus 92 ~~~n~~~e~~~~~~~~kp~~~~~~~~r~~fI~~KY~~~~f~~~~~ 136 (314)
..+|++||+++|....+|.|+++...|++||++||++++|+.++.
T Consensus 95 ~~~~~~~e~~~~~~~~~p~~~~~~~~~e~fIr~KY~~~~f~~~~~ 139 (386)
T 3lju_X 95 DAARARFESKVPSFYYRPTPSDCQLLREQWIRAKYERQEFIYPEK 139 (386)
T ss_dssp HHHHHHHTTTCCTTSCCCCTTSCHHHHHHHHHHHHTSCTTTSGGG
T ss_pred hHHHHHHhccCCccCCCCCCccchHHHHHEHHhhhCCCEEECCcc
Confidence 999999999999888899999999999999999999999997544
No 7
>3dwd_A ADP-ribosylation factor GTPase-activating protein; GAP, structural genomics consorti ER-golgi transport, golgi apparatus, GTPase activation; 2.40A {Homo sapiens}
Probab=100.00 E-value=4.1e-37 Score=245.27 Aligned_cols=123 Identities=31% Similarity=0.567 Sum_probs=92.9
Q ss_pred CCCCCCCCCCCcHHHHHHHHHcCCCCCCCcCCCCCCCCeEEecccceechhhHHHHhhcCCceeEEEEeccCCCCHHHHH
Q 021294 4 QHANSDPKNVSGPRARLENLLRQPGNRHCADCGSPDPKWVSLSTGVFICIKCSGIHRSLGVHISKVLSVKLDEWTNEQVD 83 (314)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~l~~~~~N~~C~dC~~~~p~w~s~~~g~~~C~~C~~~Hr~lg~~~s~v~s~~~d~w~~~~v~ 83 (314)
++-...|-.++.++++|++|++.|+|+.|||||+++|+|||+|||||||++||||||.||+|||+||||+||+|+++||+
T Consensus 13 ~~~~~~~m~~~~~~~~l~~L~~~p~N~~CaDCga~~P~WaS~nlGvfiC~~CSgiHR~LG~hISkVkSl~LD~W~~~el~ 92 (147)
T 3dwd_A 13 GLVPRGSMASPRTRKVLKEVRVQDENNVCFECGAFNPQWVSVTYGIWICLECSGRHRGLGVHLSFVRSVTMDKWKDIELE 92 (147)
T ss_dssp ---------CHHHHHHHHHHHTSTTTTBCTTTCCBSCCEEETTTTEEECHHHHHHHHHHCTTTCCEEESCC--CCHHHHH
T ss_pred CcccCCCCCCHHHHHHHHHHHcCcCCCccCCCCCCCCCeEEecccEeEhHhhChHHhcCCCCCCccccccccCCCHHHHH
Confidence 34455566778899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcchhHHHHHHhhhCCCCCCCCCCCCCHHHH---------HHHHhcccccceee
Q 021294 84 ALAEMGGNIAVNKKYEAYTPGNLKKPSPNSFIDER---------SDFIRRKYEKLEFF 132 (314)
Q Consensus 84 ~~~~~gGN~~~n~~~e~~~~~~~~kp~~~~~~~~r---------~~fI~~KY~~~~f~ 132 (314)
.|+. |||.++|++||+... ..|..+..+| ++-|.++++.+.|.
T Consensus 93 ~m~~-~GN~~an~~~ea~~~-----~~~~~~~~~KY~s~aA~~Yr~~l~~~~eg~~w~ 144 (147)
T 3dwd_A 93 KMKA-GGNAKFREFLESQED-----YDPCWSLQEKYNSRAAALFRDKVVALAEGREWS 144 (147)
T ss_dssp HHHH-CCHHHHHHHHHTSTT-----CCTTCCHHHHHTSHHHHHHHHHHHHHHC-----
T ss_pred HHHH-HhhHHHHHHHHhCCC-----CCCCCCHHHhhCCHHHHHHHHHHHHHHcCCcCC
Confidence 9965 799999999998631 1233444443 34566666666665
No 8
>2crw_A ARF GAP 3, ADP-ribosylation factor GTPase-activating protein 3; arfgap domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=100.00 E-value=2.3e-37 Score=249.39 Aligned_cols=90 Identities=38% Similarity=0.753 Sum_probs=85.1
Q ss_pred CcHHHHHHHHHcCCCCCCCcCCCCCCCCeEEecccceechhhHHHHhhcCCceeEEEEeccCC-CCHHHHHHHHHhcchh
Q 021294 14 SGPRARLENLLRQPGNRHCADCGSPDPKWVSLSTGVFICIKCSGIHRSLGVHISKVLSVKLDE-WTNEQVDALAEMGGNI 92 (314)
Q Consensus 14 ~~~~~~~~~l~~~~~N~~C~dC~~~~p~w~s~~~g~~~C~~C~~~Hr~lg~~~s~v~s~~~d~-w~~~~v~~~~~~gGN~ 92 (314)
+..+++|+.|++.|+|+.|||||+++|+|||+|||||||++|+||||.||+|||+||||+||. |+++||+.|+ .|||.
T Consensus 14 ~~~~~~l~~L~~~p~N~~CaDCga~~P~WaS~n~GvfiC~~CsgiHR~LG~hiS~VrSl~LD~~W~~~~l~~m~-~~GN~ 92 (149)
T 2crw_A 14 QDILTIFKRLRSVPTNKVCFDCGAKNPSWASITYGVFLCIDCSGSHRSLGVHLSFIRSTELDSNWSWFQLRCMQ-VGGNA 92 (149)
T ss_dssp HHHHHHHHHHHHSTTTSBCSSSCCBSCCCEETTTTEECCHHHHHHHHHHCTTTCCEECSSSCCCCCHHHHHHHH-TTCHH
T ss_pred HHHHHHHHHHhcCcCCCcCCCCcCCCCCcEEeccCEEEchhcchhhccCCCCCCeeeccccCCCCCHHHHHHHH-HHhhH
Confidence 457899999999999999999999999999999999999999999999999999999999995 9999999995 67999
Q ss_pred HHHHHHhhhCCC
Q 021294 93 AVNKKYEAYTPG 104 (314)
Q Consensus 93 ~~n~~~e~~~~~ 104 (314)
++|++||++.+.
T Consensus 93 ~an~~~e~~~~~ 104 (149)
T 2crw_A 93 SASSFFHQHGCS 104 (149)
T ss_dssp HHHHHHHHHCCC
T ss_pred HHHHHHHhcCCC
Confidence 999999999853
No 9
>2p57_A GTPase-activating protein ZNF289; zinc finger, GAP, structural genomics, structural genomics consortium, SGC, metal binding protein; 1.80A {Homo sapiens}
Probab=100.00 E-value=1.6e-35 Score=236.34 Aligned_cols=90 Identities=39% Similarity=0.795 Sum_probs=83.6
Q ss_pred CCCcHHHHHHHHHcCCCCCCCcCCCCCCCCeEEecccceechhhHHHHhhcCCceeEEEEeccCC-CCHHHHHHHHHhcc
Q 021294 12 NVSGPRARLENLLRQPGNRHCADCGSPDPKWVSLSTGVFICIKCSGIHRSLGVHISKVLSVKLDE-WTNEQVDALAEMGG 90 (314)
Q Consensus 12 ~~~~~~~~~~~l~~~~~N~~C~dC~~~~p~w~s~~~g~~~C~~C~~~Hr~lg~~~s~v~s~~~d~-w~~~~v~~~~~~gG 90 (314)
+.+..+++++.|++.|+|+.|||||+++|+|||+|||||||++|||+||+||+|||+|+|++||. |+++||+.|+ .||
T Consensus 20 ~k~~~~~~l~~L~~~p~N~~CaDCga~~P~WaS~n~GvfiC~~CsgiHR~LG~hIS~VrSl~LD~~W~~~~l~~m~-~~G 98 (144)
T 2p57_A 20 NKTEIQTLFKRLRAVPTNKACFDCGAKNPSWASITYGVFLCIDCSGVHRSLGVHLSFIRSTELDSNWNWFQLRCMQ-VGG 98 (144)
T ss_dssp CHHHHHHHHHHHHHSGGGGBCTTTCCBSCCEEEGGGTEEECHHHHHHHHHHCTTTCCEEESSSCCCCCHHHHHHHH-HCC
T ss_pred CHHHHHHHHHHHhcCCCCCcCCCCcCCCCCeEEeccCEEEhhhchHHHcCCCCCCCeeeecccCCCCCHHHHHHHH-HhC
Confidence 34456788888999999999999999999999999999999999999999999999999999996 9999999995 579
Q ss_pred hhHHHHHHhhhC
Q 021294 91 NIAVNKKYEAYT 102 (314)
Q Consensus 91 N~~~n~~~e~~~ 102 (314)
|.++|++||+..
T Consensus 99 N~~an~~~e~~g 110 (144)
T 2p57_A 99 NANATAFFRQHG 110 (144)
T ss_dssp HHHHHHHHHHTT
T ss_pred HHHHHHHHHHcC
Confidence 999999999884
No 10
>3sub_A ADP-ribosylation factor GTPase-activating protein; protein trafficking, hydrolase AC; 2.40A {Plasmodium falciparum 3D7}
Probab=100.00 E-value=6.4e-35 Score=235.80 Aligned_cols=91 Identities=42% Similarity=0.822 Sum_probs=85.0
Q ss_pred CcHHHHHHHHHcC-CCCCCCcCCCCCCCCeEEecccceechhhHHHHhhcCCceeEEEEeccCCCCHHHHHHHHHhcchh
Q 021294 14 SGPRARLENLLRQ-PGNRHCADCGSPDPKWVSLSTGVFICIKCSGIHRSLGVHISKVLSVKLDEWTNEQVDALAEMGGNI 92 (314)
Q Consensus 14 ~~~~~~~~~l~~~-~~N~~C~dC~~~~p~w~s~~~g~~~C~~C~~~Hr~lg~~~s~v~s~~~d~w~~~~v~~~~~~gGN~ 92 (314)
+.+++.|++|++. |+|+.|||||+++|+|||++||||||++|||+||.||+|||+||||+||.|++++|+.|+ .|||.
T Consensus 6 a~a~~~l~~L~~~~p~N~~CaDCga~~P~WaS~nlGvflCi~CSGiHR~LG~hISkVKSltLD~Wt~e~l~~m~-~~GN~ 84 (163)
T 3sub_A 6 AAAVEFINRLKKEDESNNKCFDCGISNPDWVSVNHGIFLCINCSGVHRSLGVHISIVRSIKMDIFTDEQLKYID-KGGNK 84 (163)
T ss_dssp HHHHHHHHHHHHHSGGGGBCTTTCCBSCCEEETTTTEEECHHHHHHHHHTCTTTCCEEETTTCCCCHHHHHHHH-HCCHH
T ss_pred HHHHHHHHHHHhCCCCCCccccCCCCCCCeEEecCCeeEHHhhhHHhcCCCCCCCeeeeccccCcCHHHHHHHH-hhCHH
Confidence 3578999999986 899999999999999999999999999999999999999999999999999999999996 57999
Q ss_pred HHHHHHhhhCCCC
Q 021294 93 AVNKKYEAYTPGN 105 (314)
Q Consensus 93 ~~n~~~e~~~~~~ 105 (314)
++|++||++.+..
T Consensus 85 ~an~~~e~~g~~~ 97 (163)
T 3sub_A 85 KCQTYLENYGISD 97 (163)
T ss_dssp HHHHHHHHTTCTT
T ss_pred HHHHHHHHcCCcc
Confidence 9999999987643
No 11
>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}
Probab=100.00 E-value=3e-33 Score=255.71 Aligned_cols=120 Identities=36% Similarity=0.644 Sum_probs=112.0
Q ss_pred CCcHHHHHHHHHcCCCCCCCcCCCCCCCCeEEecccceechhhHHHHhhcCCceeEEEEeccCCCCHHHHHHHHHhcchh
Q 021294 13 VSGPRARLENLLRQPGNRHCADCGSPDPKWVSLSTGVFICIKCSGIHRSLGVHISKVLSVKLDEWTNEQVDALAEMGGNI 92 (314)
Q Consensus 13 ~~~~~~~~~~l~~~~~N~~C~dC~~~~p~w~s~~~g~~~C~~C~~~Hr~lg~~~s~v~s~~~d~w~~~~v~~~~~~gGN~ 92 (314)
.+.++++++.|++.|+|+.|||||+++|+|+|+|+|+|+|++|||+||.||+|||+|+|++||.|+++++..|.. +||.
T Consensus 26 ~~~~~~~~~~~~~~~~n~~c~dc~~~~p~w~s~~~g~~~c~~cs~~hr~lg~~is~v~sl~lD~w~~~~l~~~~~-~GN~ 104 (301)
T 2b0o_E 26 HDLTKLLIAEVKSRPGNSQCCDCGAADPTWLSTNLGVLTCIQCSGVHRELGVRFSRMQSLTLDLLGPSELLLALN-MGNT 104 (301)
T ss_dssp -CHHHHHHHHHHTSTTTTBCTTTCCBSCCEEETTTTEEECHHHHHHHHHHCTTTCCEEETTTSCCCHHHHHHHHH-CCHH
T ss_pred HHHHHHHHHHHhcCCCCCcCCCCCCCCCCeEEeecCeEEcHHHHHHHHhhCCCcccccccCcCCCCHHHHHHHHH-cCCH
Confidence 345788899999999999999999999999999999999999999999999999999999999999999999976 5899
Q ss_pred HHHHHHhhhCCCC-CCCCCCCCCHHHHHHHHhcccccceeec
Q 021294 93 AVNKKYEAYTPGN-LKKPSPNSFIDERSDFIRRKYEKLEFFN 133 (314)
Q Consensus 93 ~~n~~~e~~~~~~-~~kp~~~~~~~~r~~fI~~KY~~~~f~~ 133 (314)
.+|.+||+.++.. ..+|.+.++...|++||++||++++|..
T Consensus 105 ~~n~i~E~~l~~~~~~kP~~~s~~~~r~~~I~~Ky~~~~f~~ 146 (301)
T 2b0o_E 105 SFNEVMEAQLPSHGGPKPSAESDMGTRRDYIMAKYVEHRFAR 146 (301)
T ss_dssp HHHHHHTTTCCSSSCSCCCTTCCHHHHHHHHHHHHTSCTTSC
T ss_pred HHHHHHHHhhhhccCCCCCCcccHHHHHHHHHHHHHhhhhhc
Confidence 9999999999875 6799999999999999999999999985
No 12
>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1
Probab=100.00 E-value=2.5e-33 Score=253.39 Aligned_cols=119 Identities=36% Similarity=0.668 Sum_probs=111.9
Q ss_pred CcHHHHHHHHHcCCCCCCCcCCCCCCCCeEEecccceechhhHHHHhhcCCceeEEEEeccCCCCHHHHHHHHHhcchhH
Q 021294 14 SGPRARLENLLRQPGNRHCADCGSPDPKWVSLSTGVFICIKCSGIHRSLGVHISKVLSVKLDEWTNEQVDALAEMGGNIA 93 (314)
Q Consensus 14 ~~~~~~~~~l~~~~~N~~C~dC~~~~p~w~s~~~g~~~C~~C~~~Hr~lg~~~s~v~s~~~d~w~~~~v~~~~~~gGN~~ 93 (314)
+.+++++++|++.|+|+.|||||+++|+|+|+|||+|+|++|||+||.||+|||+|||++||.|+++++..|.. +||..
T Consensus 2 ~~~~~~~~~~~~~~~n~~c~dc~~~~p~w~s~~~g~~~c~~c~~~hr~lg~~is~v~s~~~d~~~~~~l~~~~~-~GN~~ 80 (278)
T 1dcq_A 2 ELTKEIISEVQRMTGNDVCCDCGAPDPTWLSTNLGILTCIECSGIHRELGVHYSRMQSLTLDVLGTSELLLAKN-IGNAG 80 (278)
T ss_dssp -CHHHHHHHHHHSTTTTBCTTTCCBSCCEEETTTTEEECHHHHHHHHHHCTTTCCEEETTTSCCCGGGGHHHHH-SCHHH
T ss_pred chHHHHHHHHHcCCCCCcCCCCCCCCCCeEEecCCeEEcHHHHHHHhhcCCCcceeeeeecCCCCHHHHHHHHH-cCcHH
Confidence 46899999999999999999999999999999999999999999999999999999999999999999998865 59999
Q ss_pred HHHHHhhhCCCCC-CCCCCCCCHHHHHHHHhcccccceeec
Q 021294 94 VNKKYEAYTPGNL-KKPSPNSFIDERSDFIRRKYEKLEFFN 133 (314)
Q Consensus 94 ~n~~~e~~~~~~~-~kp~~~~~~~~r~~fI~~KY~~~~f~~ 133 (314)
+|++||+.+|... .+|.|.+.+..+++||++||..++|..
T Consensus 81 ~n~i~e~~l~~~~~~kP~~~s~~~~~~~fI~aKYl~~~f~~ 121 (278)
T 1dcq_A 81 FNEIMECCLPSEDPVKPNPGSDMIARKDYITAKYMERRYAR 121 (278)
T ss_dssp HHHHHTTTCCSSSCCSCCTTCCHHHHHHHHHHHHTTCTTSC
T ss_pred HHHHHHhhCChhhcCCCCCCCCHHHHHHHHHHHHHHhhccc
Confidence 9999999998654 489999999999999999999999986
No 13
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=99.97 E-value=7.7e-33 Score=269.39 Aligned_cols=122 Identities=35% Similarity=0.623 Sum_probs=113.0
Q ss_pred CCCcHHHHHHHHHcCCCCCCCcCCCCCCCCeEEecccceechhhHHHHhhcCCceeEEEEeccCCCCHHHHHHHHHhcch
Q 021294 12 NVSGPRARLENLLRQPGNRHCADCGSPDPKWVSLSTGVFICIKCSGIHRSLGVHISKVLSVKLDEWTNEQVDALAEMGGN 91 (314)
Q Consensus 12 ~~~~~~~~~~~l~~~~~N~~C~dC~~~~p~w~s~~~g~~~C~~C~~~Hr~lg~~~s~v~s~~~d~w~~~~v~~~~~~gGN 91 (314)
.++.++++++.|++.|+|+.|||||+++|+|+|+|+|||+|++|||+||+||+|||+|||++||.|+++++.+|.. +||
T Consensus 6 ~~~~~~~~~~~~~~~~~n~~c~dc~~~~p~w~s~~~~~~~c~~c~~~hr~lg~~~s~vrsl~ld~w~~~~~~l~~~-~GN 84 (497)
T 3lvq_E 6 PHDLTKLLIAEVKSRPGNSQCCDCGAADPTWLSTNLGVLTCIQCSGVHRELGVRFSRMQSLTLDLLGPSELLLALN-MGN 84 (497)
T ss_dssp --CHHHHHHHHHHTSTTTTBCTTTCCBSCCEEETTTTEEECHHHHHHHHHHCTTTCCEEETTTSCCCGGGGTTTTT-CCH
T ss_pred hHHHHHHHHHHHhcCCCCCcccCCCCCCCCEEEechhHHhHHhhHHHHHhhccccceecccccCCCCHHHHHHHHH-Hhh
Confidence 4566899999999999999999999999999999999999999999999999999999999999999999999965 589
Q ss_pred hHHHHHHhhhCCCC-CCCCCCCCCHHHHHHHHhcccccceeecc
Q 021294 92 IAVNKKYEAYTPGN-LKKPSPNSFIDERSDFIRRKYEKLEFFNF 134 (314)
Q Consensus 92 ~~~n~~~e~~~~~~-~~kp~~~~~~~~r~~fI~~KY~~~~f~~~ 134 (314)
..+|.+||+.+|.. ..+|.+.+....|++||++||++++|...
T Consensus 85 ~~an~i~E~~lp~~~~~kP~~~s~~~~re~fIraky~~~~f~~~ 128 (497)
T 3lvq_E 85 TSFNEVMEAQLPSHGGPKPSAESDMGTRRDYIMAKYVEHRFARR 128 (497)
T ss_dssp HHHHHHHTTTCCSSSCSCCCTTCCHHHHHHHHHHHHTTCTTSCC
T ss_pred HHHHHHHHhhcccccCCCCCCcCcHHHHHHHHHHHhhccccccc
Confidence 99999999999854 47888999999999999999999999864
No 14
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=99.96 E-value=3.9e-29 Score=231.21 Aligned_cols=91 Identities=36% Similarity=0.750 Sum_probs=84.6
Q ss_pred CCCcHHHHHHHHHcCCCCCCCcCCCCCCCCeEEecccceechhhHHHHhhcCCceeEEEEeccCCCCHHHHHHHHHhcch
Q 021294 12 NVSGPRARLENLLRQPGNRHCADCGSPDPKWVSLSTGVFICIKCSGIHRSLGVHISKVLSVKLDEWTNEQVDALAEMGGN 91 (314)
Q Consensus 12 ~~~~~~~~~~~l~~~~~N~~C~dC~~~~p~w~s~~~g~~~C~~C~~~Hr~lg~~~s~v~s~~~d~w~~~~v~~~~~~gGN 91 (314)
.++.+++.|++|++.|+|+.|||||+++|+|||+|||||+|+.|||+||.||+|||+|||++||+|++++|+.|+. +||
T Consensus 20 ~~~~~~~~~~~~~~~~~n~~c~dc~~~~~~~~~~~~~~~~c~~c~~~hr~~~~~~s~v~s~~~~~~~~~~~~~~~~-~gN 98 (329)
T 3o47_A 20 ASPRTRKVLKEVRVQDENNVCFECGAFNPQWVSVTYGIWICLECSGRHRGLGVHLSFVRSVTMDKWKDIELEKMKA-GGN 98 (329)
T ss_dssp ---CHHHHHHHHHHSTTTTBCTTTCCBSCCEEEGGGTEEECHHHHHHHHHHCTTTCCEEESSSCCCCHHHHHHHHH-CCH
T ss_pred CCHHHHHHHHHHHcCCCCCcCCCCCCCCCCeEEecCCEEEChhhhhhhcccCCCcCEEeeccccCCCHHHHHHHHH-hCc
Confidence 4577899999999999999999999999999999999999999999999999999999999999999999999965 699
Q ss_pred hHHHHHHhhhCC
Q 021294 92 IAVNKKYEAYTP 103 (314)
Q Consensus 92 ~~~n~~~e~~~~ 103 (314)
..+|++||+...
T Consensus 99 ~~~n~~~e~~~~ 110 (329)
T 3o47_A 99 AKFREFLESQED 110 (329)
T ss_dssp HHHHHHHHTCSS
T ss_pred HHHHHHHHhcCC
Confidence 999999998753
No 15
>2ep6_A MCTP2 protein; beta sandwich, Ca2+ binding, membrane binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.7.1.1
Probab=99.73 E-value=1.4e-17 Score=133.42 Aligned_cols=98 Identities=32% Similarity=0.574 Sum_probs=89.9
Q ss_pred cceeeeeEEEEEEEeeecCCCCCCC-CCCcEEEEEECCeEeeeeeecCCCCCcccceeEEEecCCCCcEEEEEEEcCCCC
Q 021294 200 AMVEFVGLIKVNVVKGTNLAVRDVM-TSDPYVILALGHQTVKTRVIKSNLNPVWNESLMLSIPENIPPLKVLVYDKDTFT 278 (314)
Q Consensus 200 ~~~e~~g~L~V~v~~a~~L~~~d~~-~~dPyv~v~l~~~~~kT~~~~~tlnP~w~e~~~f~v~~~~~~L~i~v~d~d~~~ 278 (314)
......+.|.|+|++|++|+..+.. .+||||++.++.++.+|+++++++||.|||.|.|.+......|.|+|||++.++
T Consensus 7 ~~~~~~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~kT~~~~~t~nP~wne~f~f~~~~~~~~l~i~V~d~d~~~ 86 (133)
T 2ep6_A 7 GDVKDVGILQVKVLKAADLLAADFSGKSDPFCLLELGNDRLQTHTVYKNLNPEWNKVFTFPIKDIHDVLEVTVFDEDGDK 86 (133)
T ss_dssp CSCCCSEEEEEEEEEEESCCCSSSSSCCCEEEEEEETTEEEECCCCSSCSSCCCCEEEEEEESCTTCEEEEEEEEEETTE
T ss_pred cccCCceEEEEEEEeeECCCCCCCCCCcCeEEEEEECCEEEEeeeecCCCCCccccEEEEEecCCCCEEEEEEEECCCCC
Confidence 4566789999999999999998876 899999999999999999999999999999999999876678999999999999
Q ss_pred CCceeEEEEEeCccccccc
Q 021294 279 TDDFMGDAEIDIQPLVTAA 297 (314)
Q Consensus 279 ~dd~iG~~~v~l~~l~~~~ 297 (314)
++++||++.++|.++..+.
T Consensus 87 ~~~~lG~~~i~l~~l~~~~ 105 (133)
T 2ep6_A 87 PPDFLGKVAIPLLSIRDGQ 105 (133)
T ss_dssp EEEECCBCEEEGGGCCSSC
T ss_pred CCCeeEEEEEEHHHccCCC
Confidence 9999999999999997654
No 16
>3kwu_A MUNC13-1; calcium binding protein, phospholipid binding protein, metal binding protein; HET: GOL; 1.37A {Rattus norvegicus} SCOP: b.7.1.0 PDB: 3kwt_A*
Probab=99.73 E-value=5e-17 Score=132.47 Aligned_cols=96 Identities=32% Similarity=0.570 Sum_probs=85.4
Q ss_pred hcceeeeeEEEEEEEeeecCCCCCCC-CCCcEEEEEECCeEeeeeeecCCCCCcccceeEEEecCCCCcEEEEEEEcCCC
Q 021294 199 VAMVEFVGLIKVNVVKGTNLAVRDVM-TSDPYVILALGHQTVKTRVIKSNLNPVWNESLMLSIPENIPPLKVLVYDKDTF 277 (314)
Q Consensus 199 ~~~~e~~g~L~V~v~~a~~L~~~d~~-~~dPyv~v~l~~~~~kT~~~~~tlnP~w~e~~~f~v~~~~~~L~i~v~d~d~~ 277 (314)
.++..+.|.|.|+|++|++|+..+.. .+||||++.++.+..+|+++++++||.|+|.|.|.+......|.|+|||++..
T Consensus 10 ~~~~~~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~kT~~~~~t~nP~Wne~f~f~v~~~~~~l~~~v~d~d~~ 89 (148)
T 3kwu_A 10 DGTSKWSAKISITVVCAQGLQAKDKTGSSDPYVTVQVGKTKKRTKTIYGNLNPVWEENFHFECHNSSDRIKVRVLDEDDD 89 (148)
T ss_dssp -----CCEEEEEEEEEEESCCCCSTTSCCCEEEEEEETTEEEECCCCCSCSSCEEEEEEEEEECSTTCEEEEEEEECCCS
T ss_pred ccccccccEEEEEEEeeeCCCCCCCCCCcCeEEEEEECCEEEECCccCCCCCCCcccEEEEEecCCCCEEEEEEEECCCC
Confidence 35667889999999999999998876 89999999999999999999999999999999999977668899999999986
Q ss_pred -----------CCCceeEEEEEeCcccc
Q 021294 278 -----------TTDDFMGDAEIDIQPLV 294 (314)
Q Consensus 278 -----------~~dd~iG~~~v~l~~l~ 294 (314)
+.+++||++.++|.++.
T Consensus 90 ~~~~~~~~~~~~~~~~lG~~~i~l~~l~ 117 (148)
T 3kwu_A 90 IKSRVKQRFKRESDDFLGQTIIEVRTLS 117 (148)
T ss_dssp HHHHHHTTTSSCSSEEEEEEEEEGGGCC
T ss_pred ccccccccccCCCCccEEEEEEEHHHCc
Confidence 88999999999999984
No 17
>2fk9_A Protein kinase C, ETA type; ATP-binding, metal-binding, nucleotide-binding, diacylglycerol binding, serine/threonine-protein kinase, transferase; 1.75A {Homo sapiens}
Probab=99.72 E-value=1.2e-17 Score=137.64 Aligned_cols=97 Identities=18% Similarity=0.367 Sum_probs=85.4
Q ss_pred hcceeeeeEEEEEEEeeecCCCCCC-----------CCCCcEEEEEECCeE-eeeeeecCCCCCcccceeEEEecCCCCc
Q 021294 199 VAMVEFVGLIKVNVVKGTNLAVRDV-----------MTSDPYVILALGHQT-VKTRVIKSNLNPVWNESLMLSIPENIPP 266 (314)
Q Consensus 199 ~~~~e~~g~L~V~v~~a~~L~~~d~-----------~~~dPyv~v~l~~~~-~kT~~~~~tlnP~w~e~~~f~v~~~~~~ 266 (314)
.++....|.|.|+|++|++|+..|. ..+||||++.++.+. .+|+++++++||.|||.|.|.+.. ...
T Consensus 22 ~~~~~~~g~L~V~VieA~~L~~~D~~~~~~~f~~~~g~sDPYv~v~l~~~~~~kT~v~~ktlnP~WNE~F~f~v~~-~~~ 100 (157)
T 2fk9_A 22 SGTMKFNGYLRVRIGEAVGLQPTRWSLRHSLFKKGHQLLDPYLTVSVDQVRVGQTSTKQKTNKPTYNEEFCANVTD-GGH 100 (157)
T ss_dssp --CCCEEEEEEEEEEEEECCCCCHHHHHTTTSSSSCCCCCEEEEEEETTEEEEECCCCSSCSSCEEEEEEEEEEEE-ECE
T ss_pred chhccCccEEEEEEEEEECCCCccccccccccccCCCCCCeEEEEEECCEeeEEeeecCCCCCCccCcEEEEEcCC-CCE
Confidence 4567888999999999999998772 258999999998866 699999999999999999999865 358
Q ss_pred EEEEEEEcCCCCCCceeEEEEEeCcccccc
Q 021294 267 LKVLVYDKDTFTTDDFMGDAEIDIQPLVTA 296 (314)
Q Consensus 267 L~i~v~d~d~~~~dd~iG~~~v~l~~l~~~ 296 (314)
|.|+|||++.+++|++||.+.|+|.++..+
T Consensus 101 L~~~V~D~d~~~~dd~iG~~~i~l~~l~~~ 130 (157)
T 2fk9_A 101 LELAVFHETPLGYDHFVANCTLQFQELLRT 130 (157)
T ss_dssp EEEEEEECCSSSSCEEEEEEEEEHHHHHHH
T ss_pred EEEEEEECCCCCCCCEEEEEEEEHHHhhcc
Confidence 999999999999999999999999999865
No 18
>1wfj_A Putative elicitor-responsive gene; C2 domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, plant protein; NMR {Arabidopsis thaliana} SCOP: b.7.1.2
Probab=99.70 E-value=2.3e-17 Score=132.47 Aligned_cols=95 Identities=32% Similarity=0.530 Sum_probs=87.3
Q ss_pred ceeeeeEEEEEEEeeecCCCCCCC-CCCcEEEEEECCeEeeeeeec-CCCCCcccceeEEEecCCCCcEEEEEEEcCCCC
Q 021294 201 MVEFVGLIKVNVVKGTNLAVRDVM-TSDPYVILALGHQTVKTRVIK-SNLNPVWNESLMLSIPENIPPLKVLVYDKDTFT 278 (314)
Q Consensus 201 ~~e~~g~L~V~v~~a~~L~~~d~~-~~dPyv~v~l~~~~~kT~~~~-~tlnP~w~e~~~f~v~~~~~~L~i~v~d~d~~~ 278 (314)
.....+.|.|+|++|++|+..+.. .+||||++.++.+..+|++++ +++||.|||.|.|.+......|.|+|||++.++
T Consensus 5 ~~~~~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~kT~~~~~~~~nP~Wne~f~f~v~~~~~~l~~~V~d~~~~~ 84 (136)
T 1wfj_A 5 SSGPHGTLEVVLVSAKGLEDADFLNNMDPYVQLTCRTQDQKSNVAEGMGTTPEWNETFIFTVSEGTTELKAKIFDKDVGT 84 (136)
T ss_dssp CCCCEEEEEEEEEEEEECSSCCSSCSSCCCEEEESSSCEEECCCCTTCCSSCEEEEEEEEEEESSCCEEEEEECCSSSCT
T ss_pred CCCCcEEEEEEEEeccCCCCcccCCCcCceEEEEECCccceeEeccCCCCCCccCcEEEEEECCCCCEEEEEEEECCCCC
Confidence 345779999999999999998876 899999999999999999998 899999999999999877788999999999999
Q ss_pred CCceeEEEEEeCccccc
Q 021294 279 TDDFMGDAEIDIQPLVT 295 (314)
Q Consensus 279 ~dd~iG~~~v~l~~l~~ 295 (314)
+|++||++.++|.++..
T Consensus 85 ~d~~lG~~~i~l~~l~~ 101 (136)
T 1wfj_A 85 EDDAVGEATIPLEPVFV 101 (136)
T ss_dssp TTCCSEEEEEESHHHHH
T ss_pred CCceEEEEEEEHHHhcc
Confidence 99999999999999854
No 19
>2dmh_A Myoferlin; beta-sandwich, FER-1-like protein 3, muscular dystrophy, cardiomyopathy, membrane fusion, dystrophin, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.70 E-value=8.9e-17 Score=129.67 Aligned_cols=97 Identities=25% Similarity=0.436 Sum_probs=86.8
Q ss_pred eeeEEEEEEEeeecCCCCCCCCCCcEEEEEECCeEeeeeeecCCCCCcccceeEEEecC----CCCcEEEEEEEcCCCCC
Q 021294 204 FVGLIKVNVVKGTNLAVRDVMTSDPYVILALGHQTVKTRVIKSNLNPVWNESLMLSIPE----NIPPLKVLVYDKDTFTT 279 (314)
Q Consensus 204 ~~g~L~V~v~~a~~L~~~d~~~~dPyv~v~l~~~~~kT~~~~~tlnP~w~e~~~f~v~~----~~~~L~i~v~d~d~~~~ 279 (314)
..|.|.|+|++|++|+..+...+||||++.++.++.+|+++++++||.|||.|.|.+.. ....|.|+|||++.++.
T Consensus 5 ~~g~L~v~v~~a~~L~~~~~g~~dpyv~v~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~~~l~i~V~d~d~~~~ 84 (140)
T 2dmh_A 5 SSGMLRVIVESASNIPKTKFGKPDPIVSVIFKDEKKKTKKVDNELNPVWNEILEFDLRGIPLDFSSSLGIIVKDFETIGQ 84 (140)
T ss_dssp BCCEEEEEEEEEESCCCCSSSCCCEEEEEECSSCEEECCCCCSCSSCEEEEEEEEECSSCCCCTTCEEEEEEEETTCSSS
T ss_pred CCcEEEEEEEEeeCCCCCCCCCCCeEEEEEECCEeEEeeeecCCCCCccCcEEEEEecccccCCCCEEEEEEEECCCCCC
Confidence 35799999999999998877778999999999999999999999999999999999864 35789999999999999
Q ss_pred CceeEEEEEeCcccccccccc
Q 021294 280 DDFMGDAEIDIQPLVTAARAC 300 (314)
Q Consensus 280 dd~iG~~~v~l~~l~~~~~~~ 300 (314)
+++||++.++|.++..+....
T Consensus 85 ~~~lG~~~i~l~~l~~~~~~~ 105 (140)
T 2dmh_A 85 NKLIGTATVALKDLTGDQSRS 105 (140)
T ss_dssp CCCCEEEEEEGGGTCSSSCEE
T ss_pred CceEEEEEEEHHHhccCCCce
Confidence 999999999999997665433
No 20
>1gmi_A Protein kinase C, epsilon type; PKC, C2 domain, X-RAY, phospholipids, PKC epsilon.; 1.7A {Rattus rattus} SCOP: b.7.1.1
Probab=99.69 E-value=6.4e-17 Score=130.12 Aligned_cols=94 Identities=20% Similarity=0.455 Sum_probs=83.4
Q ss_pred eeeeeEEEEEEEeeecCCCCCCC-C-----------CCcEEEEEECCeE-eeeeeecCCCCCcccceeEEEecCCCCcEE
Q 021294 202 VEFVGLIKVNVVKGTNLAVRDVM-T-----------SDPYVILALGHQT-VKTRVIKSNLNPVWNESLMLSIPENIPPLK 268 (314)
Q Consensus 202 ~e~~g~L~V~v~~a~~L~~~d~~-~-----------~dPyv~v~l~~~~-~kT~~~~~tlnP~w~e~~~f~v~~~~~~L~ 268 (314)
....|.|.|+|++|++|+..+.. . +||||++.++.+. .+|+++.+++||.|||.|.|.+... ..|.
T Consensus 2 ~~~~g~L~v~v~~a~~L~~~d~~~~~~~g~~~~~~~~DPyv~v~l~~~~~~~T~~~~~t~nP~WnE~f~f~v~~~-~~L~ 80 (136)
T 1gmi_A 2 VVFNGLLKIKICEAVSLKPTAWSLRDAVGPRPQTFLLDPYIALNVDDSRIGQTATKQKTNSPAWHDEFVTDVCNG-RKIE 80 (136)
T ss_dssp CCEEEEEEEEEEEEESCCCCHHHHCC-CCSSCCCCCCCEEEEEEETTEEEEECCCCSSCSSCEEEEEEEEEEEEE-CEEE
T ss_pred cccceEEEEEEEeCcCCCCcccccccccccccCCcCcCcEEEEEECCeEeeeeeEECCCcCCccCCEEEEEecCC-CEEE
Confidence 34678999999999999987743 3 8999999998765 6899999999999999999998655 7899
Q ss_pred EEEEEcCCCCCCceeEEEEEeCcccccc
Q 021294 269 VLVYDKDTFTTDDFMGDAEIDIQPLVTA 296 (314)
Q Consensus 269 i~v~d~d~~~~dd~iG~~~v~l~~l~~~ 296 (314)
|+|||++.+++|++||.+.++|.++...
T Consensus 81 ~~V~d~d~~~~dd~iG~~~i~l~~l~~~ 108 (136)
T 1gmi_A 81 LAVFHDAPIGYDDFVANCTIQFEELLQN 108 (136)
T ss_dssp EEEEECCSSSSCEEEEEEEEEHHHHTST
T ss_pred EEEEeCCCCCCCCEEEEEEEEHHHhccc
Confidence 9999999999999999999999998864
No 21
>2b3r_A Phosphatidylinositol-4-phosphate 3-kinase C2 DOMA containing alpha polypeptide; C2 domain, lipid binding, PI3-kinase, transferase; 2.30A {Mus musculus}
Probab=99.68 E-value=1.9e-16 Score=127.08 Aligned_cols=98 Identities=19% Similarity=0.307 Sum_probs=83.8
Q ss_pred eeeEEEEEEEeeecCCCCCCC-CCCcEEEEEE-----CCeEeeeeeecCCCCCcccceeEEE-ecC---CCCcEEEEEEE
Q 021294 204 FVGLIKVNVVKGTNLAVRDVM-TSDPYVILAL-----GHQTVKTRVIKSNLNPVWNESLMLS-IPE---NIPPLKVLVYD 273 (314)
Q Consensus 204 ~~g~L~V~v~~a~~L~~~d~~-~~dPyv~v~l-----~~~~~kT~~~~~tlnP~w~e~~~f~-v~~---~~~~L~i~v~d 273 (314)
..+.|.|+|++|++|+. +.. .+||||++.+ ...+.+|+++++++||.|||+|.|. +.. ....|.|+|||
T Consensus 18 ~~~~L~V~V~~a~~L~~-~~~g~~DPyv~v~l~~~~~~~~~~kT~v~~~t~nP~wnE~f~f~~v~~~~l~~~~L~~~V~d 96 (134)
T 2b3r_A 18 RNGTLFIMVMHIKDLVT-EDGADPNPYVKTYLLPDTHKTSKRKTKISRKTRNPTFNEMLVYSGYSKETLRQRELQLSVLS 96 (134)
T ss_dssp ETTEEEEEEEEEECCCC-TTSCCCCEEEEEEEESCSSSCCCEECCCCCSCSSCEEEEEEEEESCCHHHHTTCEEEEEEEE
T ss_pred cCCEEEEEEEEeeCCCC-CCCCCCCeEEEEEEEcCCCCCceecCCcCcCCCCCCCccEEEECCcCHHHhCcCEEEEEEEE
Confidence 44799999999999997 444 8999999999 4567899999999999999999999 653 45789999999
Q ss_pred cCCCCCCceeEEEEEeCccccccccccCc
Q 021294 274 KDTFTTDDFMGDAEIDIQPLVTAARACET 302 (314)
Q Consensus 274 ~d~~~~dd~iG~~~v~l~~l~~~~~~~~~ 302 (314)
++.++++++||++.++|.++..+.....|
T Consensus 97 ~d~~~~~~~lG~~~i~l~~l~~~~~~~~W 125 (134)
T 2b3r_A 97 AESLRENFFLGGITLPLKDFNLSKETVKW 125 (134)
T ss_dssp CCSSSCCEEEEEEEEEGGGSCTTSCEEEE
T ss_pred CCCCCCCcEEEEEEEEhhhccCCCCccee
Confidence 99999999999999999999765544333
No 22
>3m7f_B E3 ubiquitin-protein ligase NEDD4; C2 domain, GRB10, SH2 domain, phosphoprotein, conjugation pathway, signaling protein-ligase complex; 2.00A {Mus musculus}
Probab=99.68 E-value=2.8e-16 Score=131.91 Aligned_cols=96 Identities=33% Similarity=0.643 Sum_probs=79.0
Q ss_pred eeeEEEEEEEeeecCCCCCCC-CCCcEEEEEECC------eEeeeeeecCCCCCcccceeEEEecCCCCcEEEEEEEcCC
Q 021294 204 FVGLIKVNVVKGTNLAVRDVM-TSDPYVILALGH------QTVKTRVIKSNLNPVWNESLMLSIPENIPPLKVLVYDKDT 276 (314)
Q Consensus 204 ~~g~L~V~v~~a~~L~~~d~~-~~dPyv~v~l~~------~~~kT~~~~~tlnP~w~e~~~f~v~~~~~~L~i~v~d~d~ 276 (314)
..|.|.|+|++|++|+..+.. .+||||++.++. +.++|+++++++||.|+|.|.|.+......|.|+|||++.
T Consensus 6 ~~g~L~V~v~~a~~L~~~d~~g~~DPyv~v~l~~~~~~~~~~~kT~v~~~t~nP~Wne~f~f~v~~~~~~L~~~V~d~d~ 85 (176)
T 3m7f_B 6 DTRVVRVKVIAGIGLAKKDILGASDPYVRVTLYDPMSGILTSVQTKTIKKSLNPKWNEEILFRVLPQRHRILFEVFDENR 85 (176)
T ss_dssp TCEEEEEEEEEEESCC---CCCCCCEEEEEEEEETTTEEEEEEECCCCSSCSSCEEEEEEEEEECTTTCEEEEEEEECC-
T ss_pred CcEEEEEEEEEeeCCCCcCCCCCcCcEEEEEEECCCCCcccceeCceECCCCCCcccceEEEEEcCCCCEEEEEEEECCC
Confidence 458999999999999998876 899999999964 6789999999999999999999998766789999999999
Q ss_pred CCCCceeEEEEEeCccccccccc
Q 021294 277 FTTDDFMGDAEIDIQPLVTAARA 299 (314)
Q Consensus 277 ~~~dd~iG~~~v~l~~l~~~~~~ 299 (314)
++.+++||++.++|..+......
T Consensus 86 ~~~d~~lG~~~i~l~~l~~~~~~ 108 (176)
T 3m7f_B 86 LTRDDFLGQVDVPLYPLPTENPR 108 (176)
T ss_dssp ---CEEEEEEEEESCSCCBC---
T ss_pred CCCCcEEEEEEEEHHHccccCCc
Confidence 99999999999999999876544
No 23
>2d8k_A Synaptotagmin VII; exocytosis, calcium binding, lysosome, C2 domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.67 E-value=3.2e-16 Score=126.63 Aligned_cols=102 Identities=26% Similarity=0.400 Sum_probs=86.3
Q ss_pred eeeEEEEEEEeeecCCCCCCC-CCCcEEEEEEC---CeEeeeeeecCCCCCcccceeEEEecC----CCCcEEEEEEEcC
Q 021294 204 FVGLIKVNVVKGTNLAVRDVM-TSDPYVILALG---HQTVKTRVIKSNLNPVWNESLMLSIPE----NIPPLKVLVYDKD 275 (314)
Q Consensus 204 ~~g~L~V~v~~a~~L~~~d~~-~~dPyv~v~l~---~~~~kT~~~~~tlnP~w~e~~~f~v~~----~~~~L~i~v~d~d 275 (314)
..+.|.|+|++|++|+..+.. .+||||++.+. .+..+|+++++++||.|||.|.|.+.. ....|.|+|||++
T Consensus 24 ~~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~~~~~~~l~i~V~d~d 103 (141)
T 2d8k_A 24 QESTLTVKIMKAQELPAKDFSGTSDPFVKIYLLPDKKHKLETKVKRKNLNPHWNETFLFEGFPYEKVVQRILYLQVLDYD 103 (141)
T ss_dssp SSCCEEEEEEEEESCCCCSSSSCCCEEEEEEEESCCSSEEECCCCTTCSSCCCCEEEEECSCCHHHHTTSEEEEEEEECC
T ss_pred CCCEEEEEEEEeECCCCCCCCCCCCcEEEEEEECCCCccEeCceEcCCCCCccccEEEECccCHHHcccCEEEEEEEECC
Confidence 457899999999999998876 89999999993 467899999999999999999998532 3577999999999
Q ss_pred CCCCCceeEEEEEeCccccccccccCccccc
Q 021294 276 TFTTDDFMGDAEIDIQPLVTAARACETPISM 306 (314)
Q Consensus 276 ~~~~dd~iG~~~v~l~~l~~~~~~~~~~~~~ 306 (314)
.++++++||++.++|.++..+.... .|..+
T Consensus 104 ~~~~~~~iG~~~i~l~~l~~~~~~~-~W~~L 133 (141)
T 2d8k_A 104 RFSRNDPIGEVSIPLNKVDLTQMQT-FWKDL 133 (141)
T ss_dssp SSSSCEEEEEEEEETTTSCTTSCEE-EEECC
T ss_pred CCCCCcEEEEEEEEhhhhcCCCCcc-EEEEC
Confidence 9999999999999999998665333 34433
No 24
>3b7y_A E3 ubiquitin-protein ligase NEDD4; C2 domain, UBL-conjugation pathway, structural genomics consortium, SGC, cytoplasm; 1.80A {Homo sapiens} PDB: 2nsq_A
Probab=99.67 E-value=3.8e-16 Score=127.94 Aligned_cols=96 Identities=35% Similarity=0.670 Sum_probs=81.5
Q ss_pred eeeeEEEEEEEeeecCCCCCCC-CCCcEEEEEECC------eEeeeeeecCCCCCcccceeEEEecCCCCcEEEEEEEcC
Q 021294 203 EFVGLIKVNVVKGTNLAVRDVM-TSDPYVILALGH------QTVKTRVIKSNLNPVWNESLMLSIPENIPPLKVLVYDKD 275 (314)
Q Consensus 203 e~~g~L~V~v~~a~~L~~~d~~-~~dPyv~v~l~~------~~~kT~~~~~tlnP~w~e~~~f~v~~~~~~L~i~v~d~d 275 (314)
...+.|.|+|++|++|+..+.. .+||||++.++. ...+|+++++++||.|||.|.|.+......|.|+|||++
T Consensus 17 ~~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~l~~~V~d~d 96 (153)
T 3b7y_A 17 ENSRIVRVRVIAGIGLAKKDILGASDPYVRVTLYDPMNGVLTSVQTKTIKKSLNPKWNEEILFRVHPQQHRLLFEVFDEN 96 (153)
T ss_dssp TTCEEEEEEEEEEESCC-------CCEEEEEEEEETTTEEEEEEECCCCSSCSSCCCCEEEEEEECTTTCEEEEEEEECC
T ss_pred CCccEEEEEEEEeeCCCCCCCCCCCCcEEEEEEECCCCccceeeeCccccCCCCCCCCCEEEEEecCCCCEEEEEEEECC
Confidence 3457999999999999988876 899999999963 578999999999999999999999876678999999999
Q ss_pred CCCCCceeEEEEEeCcccccccc
Q 021294 276 TFTTDDFMGDAEIDIQPLVTAAR 298 (314)
Q Consensus 276 ~~~~dd~iG~~~v~l~~l~~~~~ 298 (314)
.++++++||++.++|.++..+..
T Consensus 97 ~~~~d~~iG~~~i~l~~l~~~~~ 119 (153)
T 3b7y_A 97 RLTRDDFLGQVDVPLYPLPTENP 119 (153)
T ss_dssp SSSCCEEEEEEEEECCSCCBCCT
T ss_pred CCcCCCeeEEEEEEHHHcccCCC
Confidence 99999999999999999986654
No 25
>1rsy_A Synaptotagmin I; calcium/phospholipid binding protein; 1.90A {Rattus norvegicus} SCOP: b.7.1.2
Probab=99.67 E-value=2.3e-16 Score=129.26 Aligned_cols=100 Identities=28% Similarity=0.447 Sum_probs=86.2
Q ss_pred eeeEEEEEEEeeecCCCCCCC-CCCcEEEEEE---CCeEeeeeeecCCCCCcccceeEEEecC---CCCcEEEEEEEcCC
Q 021294 204 FVGLIKVNVVKGTNLAVRDVM-TSDPYVILAL---GHQTVKTRVIKSNLNPVWNESLMLSIPE---NIPPLKVLVYDKDT 276 (314)
Q Consensus 204 ~~g~L~V~v~~a~~L~~~d~~-~~dPyv~v~l---~~~~~kT~~~~~tlnP~w~e~~~f~v~~---~~~~L~i~v~d~d~ 276 (314)
..+.|.|+|++|++|+..+.. .+||||++.+ +.+..+|+++++++||.|||.|.|.+.. ....|.|+|||++.
T Consensus 40 ~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~L~i~V~d~d~ 119 (152)
T 1rsy_A 40 QNNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVPYSELGGKTLVMAVYDFDR 119 (152)
T ss_dssp TTTEEEEEEEEEESCCCCSTTSCCCEEEEEEEETTCCSCEECCCCTTCSSCEEEEEEEECCCHHHHTTCEEEEEEEECCS
T ss_pred CCCEEEEEEEEeECCCCccCCCCcCeEEEEEEEcCCCceEeccccCCCCCCcCcccEEEeecHHHcCCCEEEEEEEECCC
Confidence 347899999999999998876 8999999999 4567899999999999999999998854 35789999999999
Q ss_pred CCCCceeEEEEEeCccccccccccCcc
Q 021294 277 FTTDDFMGDAEIDIQPLVTAARACETP 303 (314)
Q Consensus 277 ~~~dd~iG~~~v~l~~l~~~~~~~~~~ 303 (314)
++++++||++.++|.++..+.....|.
T Consensus 120 ~~~~~~iG~~~i~l~~l~~~~~~~~W~ 146 (152)
T 1rsy_A 120 FSKHDIIGEFKVPMNTVDFGHVTEEWR 146 (152)
T ss_dssp SSCCEEEEEEEEEGGGCCCSSCEEEEE
T ss_pred CCCCcEEEEEEEEchhccCCCCcceEE
Confidence 999999999999999997655444343
No 26
>2nq3_A Itchy homolog E3 ubiquitin protein ligase; C2 domain, UBL conjugation pathway, structural genomics consortium, SGC; 1.80A {Homo sapiens} SCOP: b.7.1.1
Probab=99.66 E-value=3.3e-16 Score=131.34 Aligned_cols=93 Identities=19% Similarity=0.403 Sum_probs=82.6
Q ss_pred eeeEEEEEEEeeecCC-CCCCCCCCcEEEEEECCeEeeeeeecCCCCCcccceeEEEecCCCCcEEEEEEEcCCCCCCce
Q 021294 204 FVGLIKVNVVKGTNLA-VRDVMTSDPYVILALGHQTVKTRVIKSNLNPVWNESLMLSIPENIPPLKVLVYDKDTFTTDDF 282 (314)
Q Consensus 204 ~~g~L~V~v~~a~~L~-~~d~~~~dPyv~v~l~~~~~kT~~~~~tlnP~w~e~~~f~v~~~~~~L~i~v~d~d~~~~dd~ 282 (314)
..+.|.|+|++|++|+ ..+...+||||++.++.+..+|+++++++||.|||.|.|.+.. ...|.|+|||++.++.+++
T Consensus 34 ~~~~L~V~V~~A~~L~~~~~~~~sDPYv~v~~~~~~~kT~v~~~tlnP~Wne~f~f~v~~-~~~L~~~V~D~d~~~~dd~ 112 (173)
T 2nq3_A 34 MKSQLQITVISAKLKENKKNWFGPSPYVEVTVDGQSKKTEKCNNTNSPKWKQPLTVIVTP-VSKLHFRVWSHQTLKSDVL 112 (173)
T ss_dssp CCEEEEEEEEEEEECCCC--CCCCCEEEEEEETTEEEECCCCSSCSSCEEEEEEEEEECT-TCEEEEEEEECCSSSCCEE
T ss_pred CceEEEEEEEEeECCCCcccCCCCCeEEEEEECCEEeEccccCCCCCCeECCEEEEEeCC-CCEEEEEEEECCCCCCCce
Confidence 4578999999999999 5555579999999999999999999999999999999999864 6789999999999999999
Q ss_pred eEEEEEeCccccccc
Q 021294 283 MGDAEIDIQPLVTAA 297 (314)
Q Consensus 283 iG~~~v~l~~l~~~~ 297 (314)
||++.++|.++..+.
T Consensus 113 lG~~~i~l~~l~~~~ 127 (173)
T 2nq3_A 113 LGTAALDIYETLKSN 127 (173)
T ss_dssp EEEEEEEHHHHHHHT
T ss_pred EEEEEEEHHHhcccC
Confidence 999999999987543
No 27
>1rlw_A Phospholipase A2, CALB domain; hydrolase, C2 domain; 2.40A {Homo sapiens} SCOP: b.7.1.1
Probab=99.66 E-value=2e-16 Score=125.25 Aligned_cols=99 Identities=24% Similarity=0.421 Sum_probs=84.2
Q ss_pred eeEEEEEEEeeecCCCC---CC-CCCCcEEEEEECC---eEeeeeeecCCCCCcccceeEEEec-CCCCcEEEEEEEcCC
Q 021294 205 VGLIKVNVVKGTNLAVR---DV-MTSDPYVILALGH---QTVKTRVIKSNLNPVWNESLMLSIP-ENIPPLKVLVYDKDT 276 (314)
Q Consensus 205 ~g~L~V~v~~a~~L~~~---d~-~~~dPyv~v~l~~---~~~kT~~~~~tlnP~w~e~~~f~v~-~~~~~L~i~v~d~d~ 276 (314)
.+.|.|+|++|++|+.. +. ..+||||++.++. +.++|+++++++||.|||.|.|.+. .....|.|+|||++.
T Consensus 2 ~~~L~v~v~~a~~L~~~~~~d~~g~~dpyv~v~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~l~i~V~d~d~ 81 (126)
T 1rlw_A 2 SHKFTVVVLRATKVTKGAFGDMLDTPDPYVELFISTTPDSRKRTRHFNNDINPVWNETFEFILDPNQENVLEITLMDANY 81 (126)
T ss_dssp CEEEEEEEEEEESCCSCHHHHHHCCCCEEEEEECTTSTTCCEECCCCTTCSSCEEEEEEEEEECTTSCCEEEEEEEECCS
T ss_pred CcEEEEEEEeeeCCCCCCccccCCCCCCEEEEEEccCCCceEEccccCCCCCCcccceEEEEecCCCCCEEEEEEEECCC
Confidence 47899999999999984 43 3789999999974 7889999999999999999999995 356789999999998
Q ss_pred CCCCceeEEEEEeCccccccccccCccc
Q 021294 277 FTTDDFMGDAEIDIQPLVTAARACETPI 304 (314)
Q Consensus 277 ~~~dd~iG~~~v~l~~l~~~~~~~~~~~ 304 (314)
++ +++||++.++|.++..+.....|..
T Consensus 82 ~~-~~~iG~~~i~l~~l~~~~~~~~~~~ 108 (126)
T 1rlw_A 82 VM-DETLGTATFTVSSMKVGEKKEVPFI 108 (126)
T ss_dssp SC-CEEEEEEEEEGGGSCTTCEEEEEEE
T ss_pred CC-CceeEEEEEEHHHccCCCcEEEEEE
Confidence 84 8999999999999986655544433
No 28
>3fbk_A RGS3, RGP3, regulator of G-protein signaling 3; all beta-sheet fold, structural genomics, PSI-2, protein structure initiative; 2.00A {Homo sapiens} SCOP: b.7.1.0
Probab=99.66 E-value=2.1e-16 Score=129.70 Aligned_cols=93 Identities=19% Similarity=0.417 Sum_probs=81.5
Q ss_pred eeeeEEEEEEEeeecCCCCCCCCCCcEEEEEE-----CCeEeeeeeecCCCCCcccceeEEEec--CCCCcEEEEEEEcC
Q 021294 203 EFVGLIKVNVVKGTNLAVRDVMTSDPYVILAL-----GHQTVKTRVIKSNLNPVWNESLMLSIP--ENIPPLKVLVYDKD 275 (314)
Q Consensus 203 e~~g~L~V~v~~a~~L~~~d~~~~dPyv~v~l-----~~~~~kT~~~~~tlnP~w~e~~~f~v~--~~~~~L~i~v~d~d 275 (314)
...+.|.|+|++|++|+..+...+||||++.+ .....+|+++++++||.|||.|.|.+. .....|.|+|||++
T Consensus 24 ~~~~~L~V~v~~a~~L~~~d~g~~Dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~L~i~V~d~d 103 (153)
T 3fbk_A 24 AQDRVLLLHIIEGKGLISKQPGTCDPYVKISLIPEDSRLRHQKTQTVPDCRDPAFHEHFFFPVQEEDDQKRLLVTVWNRA 103 (153)
T ss_dssp ESSSEEEEEEEEEESCCCCSSSCCCEEEEEEEESCSCCTTCEECCCCTTCSSCEEEEEEEEECCGGGTTSEEEEEEEECC
T ss_pred CCCCEEEEEEEEeeCCCCCCCCCCCEEEEEEEEcCCCCccEEeccccCCCCCCccccEEEEecccHHhCCEEEEEEEeCC
Confidence 34579999999999999988558999999999 345789999999999999999999983 33456999999999
Q ss_pred CCCC-CceeEEEEEeCccccc
Q 021294 276 TFTT-DDFMGDAEIDIQPLVT 295 (314)
Q Consensus 276 ~~~~-dd~iG~~~v~l~~l~~ 295 (314)
.+++ +++||++.++|.++..
T Consensus 104 ~~~~~d~~lG~~~i~l~~l~~ 124 (153)
T 3fbk_A 104 SQSRQSGLIGCMSFGVKSLLT 124 (153)
T ss_dssp SSGGGCEEEEEEEEEHHHHTC
T ss_pred CCCCCCcEEEEEEEEHHHhcC
Confidence 9887 9999999999999975
No 29
>3pyc_A E3 ubiquitin-protein ligase smurf1; phospholipid binding, membrane associate, lipid binding PROT; 1.96A {Homo sapiens} PDB: 2jqz_A
Probab=99.66 E-value=7e-16 Score=123.24 Aligned_cols=88 Identities=22% Similarity=0.431 Sum_probs=79.0
Q ss_pred eEEEEEEEeeecCCCCCCC-CCCcEEEEEECC--eEeeeeeecCCCCCcccceeEEEecCCCCcEEEEEEEcCCCCC---
Q 021294 206 GLIKVNVVKGTNLAVRDVM-TSDPYVILALGH--QTVKTRVIKSNLNPVWNESLMLSIPENIPPLKVLVYDKDTFTT--- 279 (314)
Q Consensus 206 g~L~V~v~~a~~L~~~d~~-~~dPyv~v~l~~--~~~kT~~~~~tlnP~w~e~~~f~v~~~~~~L~i~v~d~d~~~~--- 279 (314)
..|.|+|++|++|+..+.. .+||||++.++. +..+|+++++++||.|||.|.|.+... ..|.|+|||++.+++
T Consensus 5 ~~L~V~v~~a~~L~~~d~~g~sDpyv~v~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~-~~l~~~v~d~d~~~~~~~ 83 (132)
T 3pyc_A 5 IKIRLTVLCAKNLAKKDFFRLPDPFAKIVVDGSGQCHSTDTVKNTLDPKWNQHYDLYVGKT-DSITISVWNHKKIHKKQG 83 (132)
T ss_dssp EEEEEEEEEEESCCCCSTTCCCCEEEEEEETTTCCEEECCCCSSCSSCEEEEEEEEEEETT-CCEEEEEEEGGGTTSSTT
T ss_pred EEEEEEEEEeECCCCCCCCCCcCeEEEEEECCCCceEECCccCCCCCCCccCEEEEEeCCC-CEEEEEEEECCCCCCCCC
Confidence 5789999999999998876 899999999964 789999999999999999999998764 359999999999876
Q ss_pred CceeEEEEEeCcccc
Q 021294 280 DDFMGDAEIDIQPLV 294 (314)
Q Consensus 280 dd~iG~~~v~l~~l~ 294 (314)
|++||++.+++.++.
T Consensus 84 d~~lG~~~i~l~~l~ 98 (132)
T 3pyc_A 84 AGFLGCVRLLSNAIS 98 (132)
T ss_dssp TTEEEEEEECHHHHH
T ss_pred CCceEEEEEeHHHhh
Confidence 899999999998884
No 30
>3f04_A Synaptotagmin-1; C2A, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal- binding, palmitate, phosphoprotein; 1.35A {Homo sapiens} SCOP: b.7.1.2 PDB: 3f01_A 3f05_A 3f00_A 1byn_A 2k45_A 2k4a_A 2k8m_A 2ki6_A*
Probab=99.66 E-value=2.8e-16 Score=127.27 Aligned_cols=99 Identities=28% Similarity=0.455 Sum_probs=86.0
Q ss_pred eeeEEEEEEEeeecCCCCCCC-CCCcEEEEEE---CCeEeeeeeecCCCCCcccceeEEEecC---CCCcEEEEEEEcCC
Q 021294 204 FVGLIKVNVVKGTNLAVRDVM-TSDPYVILAL---GHQTVKTRVIKSNLNPVWNESLMLSIPE---NIPPLKVLVYDKDT 276 (314)
Q Consensus 204 ~~g~L~V~v~~a~~L~~~d~~-~~dPyv~v~l---~~~~~kT~~~~~tlnP~w~e~~~f~v~~---~~~~L~i~v~d~d~ 276 (314)
..+.|.|+|++|++|+..+.. .+||||++.+ +.+..+|+++++++||.|||+|.|.+.. ....|.|+|||++.
T Consensus 32 ~~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~L~i~V~d~d~ 111 (143)
T 3f04_A 32 QNNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVPYSELGGKTLVMAVYDFDR 111 (143)
T ss_dssp TTTEEEEEEEEEECCCCBGGGBCCCEEEEEEEESCCSCCEECCCCCSCSSCEEEEEEEECCCHHHHTTCEEEEEEEECCS
T ss_pred CCCEEEEEEEEecCCCCCCCCCCcCcEEEEEEECCCCccEECccCcCCCCCcCcCeEEEeecHhhcCCCEEEEEEEeCCC
Confidence 347899999999999998876 8999999999 5568899999999999999999999853 34789999999999
Q ss_pred CCCCceeEEEEEeCccccccccccCc
Q 021294 277 FTTDDFMGDAEIDIQPLVTAARACET 302 (314)
Q Consensus 277 ~~~dd~iG~~~v~l~~l~~~~~~~~~ 302 (314)
++.+++||++.++|.++..+.....|
T Consensus 112 ~~~~~~iG~~~i~l~~l~~~~~~~~W 137 (143)
T 3f04_A 112 FSKHDIIGEFKVPMNTVDFGHVTEEW 137 (143)
T ss_dssp SSCCEEEEEEEEEGGGCCTTSCEEEE
T ss_pred CCCCceEEEEEEEHHHccCCCCcceE
Confidence 99999999999999999766544433
No 31
>3rdl_A Protein kinase C alpha type; protein kinase PKC, transferase; 1.50A {Rattus norvegicus} PDB: 3gpe_A 3rdj_A 3twy_A 1dsy_A* 4dnl_A* 2uzp_A*
Probab=99.66 E-value=1.6e-16 Score=127.57 Aligned_cols=94 Identities=35% Similarity=0.507 Sum_probs=83.9
Q ss_pred eeeEEEEEEEeeecCCCCCCC-CCCcEEEEEE-----CCeEeeeeeecCCCCCcccceeEEEecC--CCCcEEEEEEEcC
Q 021294 204 FVGLIKVNVVKGTNLAVRDVM-TSDPYVILAL-----GHQTVKTRVIKSNLNPVWNESLMLSIPE--NIPPLKVLVYDKD 275 (314)
Q Consensus 204 ~~g~L~V~v~~a~~L~~~d~~-~~dPyv~v~l-----~~~~~kT~~~~~tlnP~w~e~~~f~v~~--~~~~L~i~v~d~d 275 (314)
..+.|.|+|++|++|+..+.. .+||||++.+ +....+|+++++++||.|||.|.|.+.. ....|.|+|||++
T Consensus 14 ~~~~L~v~v~~a~~L~~~d~~~~~dpyv~v~~~~~~~~~~~~kT~~~~~t~nP~wne~f~f~~~~~~~~~~l~i~v~d~d 93 (137)
T 3rdl_A 14 TDEKLHVTVRDAKNLIPMDPNGLSDPYVKLKLIPDPKNESKQKTKTIRSTLNPQWNESFTFKLKPSDKDRRLSVEIWDWD 93 (137)
T ss_dssp ETTEEEEEEEEEESCCCCSTTSCCCEEEEEEEECCTTCCCCEECCCCCSCSSCEEEEEEEEECCGGGGGCEEEEEEEECC
T ss_pred cCCEEEEEEEEeeCCCCCCCCCCCCeeEEEEEEcCCCCCeeecCceEcCCCCCCcccEEEEEcCchhcCCEEEEEEEECC
Confidence 347999999999999998876 8999999999 5678899999999999999999999854 2357999999999
Q ss_pred CCCCCceeEEEEEeCccccccc
Q 021294 276 TFTTDDFMGDAEIDIQPLVTAA 297 (314)
Q Consensus 276 ~~~~dd~iG~~~v~l~~l~~~~ 297 (314)
.++.+++||++.++|.++..+.
T Consensus 94 ~~~~~~~iG~~~i~l~~l~~~~ 115 (137)
T 3rdl_A 94 RTTRNDFMGSLSFGVSELMKMP 115 (137)
T ss_dssp SSSCCEEEEEEEEEHHHHHHSC
T ss_pred CCCCCceEEEEEEeHHHhccCc
Confidence 9999999999999999997654
No 32
>1ugk_A Synaptotagmin IV, KIAA1342; beta sandwich, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.7.1.2
Probab=99.66 E-value=3.9e-16 Score=125.67 Aligned_cols=101 Identities=27% Similarity=0.423 Sum_probs=85.7
Q ss_pred eeeEEEEEEEeeecCCCCCC--CCCCcEEEEEEC---CeEeeeeeecCCCCCcccceeEEE-ecC---CCCcEEEEEEEc
Q 021294 204 FVGLIKVNVVKGTNLAVRDV--MTSDPYVILALG---HQTVKTRVIKSNLNPVWNESLMLS-IPE---NIPPLKVLVYDK 274 (314)
Q Consensus 204 ~~g~L~V~v~~a~~L~~~d~--~~~dPyv~v~l~---~~~~kT~~~~~tlnP~w~e~~~f~-v~~---~~~~L~i~v~d~ 274 (314)
..+.|.|+|++|++|+..+. ..+||||++.+. .+..+|+++++++||.|||.|.|. +.. ....|.|+|||+
T Consensus 20 ~~~~L~v~v~~a~~L~~~d~~~~~~dpyv~v~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~v~~~~~~~~~l~i~V~d~ 99 (138)
T 1ugk_A 20 ERKAFVVNIKEARGLPAMDEQSMTSDPYIKMTILPEKKHKVKTRVLRKTLDPAFDETFTFYGIPYTQIQELALHFTILSF 99 (138)
T ss_dssp GGTEEEEEEEEEESCCCCBTTTTBCEEEEEEEEETTTCSEEECCCCSSCSSCEEEEEEEEECCCSTTGGGCEEEEEEEEE
T ss_pred CCCEEEEEEEEeeCCCCCCCCCCCCCCEEEEEEecCCCceEecCcCcCCCCCcEeeEEEEcCcCHHHhccCEEEEEEEEC
Confidence 34789999999999999886 378999999994 478999999999999999999995 654 236899999999
Q ss_pred CCCCCCceeEEEEEeCccccccccccCccc
Q 021294 275 DTFTTDDFMGDAEIDIQPLVTAARACETPI 304 (314)
Q Consensus 275 d~~~~dd~iG~~~v~l~~l~~~~~~~~~~~ 304 (314)
+.++++++||++.++|.++..+.....++.
T Consensus 100 d~~~~~~~lG~~~i~l~~l~~~~~~~~~~~ 129 (138)
T 1ugk_A 100 DRFSRDDIIGEVLIPLSGIELSEGKMLMNR 129 (138)
T ss_dssp CSSCCCCCCEEEEEECTTCCCTTCCEEEEE
T ss_pred CCCCCCcEEEEEEEehhHccCCCCcchhhh
Confidence 999999999999999999976654444433
No 33
>2z0u_A WW domain-containing protein 1; C2 domain, alternative splicing, coiled coil, cytoplasm, phosphorylation, polymorphism, lipid binding protein; 2.20A {Homo sapiens}
Probab=99.65 E-value=1.1e-16 Score=131.95 Aligned_cols=92 Identities=17% Similarity=0.195 Sum_probs=81.8
Q ss_pred eeeEEEEEEEeeecCCCCCCC-CCCcEEEEEECC------eEeeeeeecCCCCCcccceeEEEecC---CCCcEEEEEEE
Q 021294 204 FVGLIKVNVVKGTNLAVRDVM-TSDPYVILALGH------QTVKTRVIKSNLNPVWNESLMLSIPE---NIPPLKVLVYD 273 (314)
Q Consensus 204 ~~g~L~V~v~~a~~L~~~d~~-~~dPyv~v~l~~------~~~kT~~~~~tlnP~w~e~~~f~v~~---~~~~L~i~v~d 273 (314)
..+.|.|.|++|++|+.++.. .+||||++.+.. .+++|+++++++||+|||+|.|.+.. ....|.|+|||
T Consensus 41 ~~~~L~V~Vi~a~~L~~~d~~g~sDPyVkv~l~~~~~~~~~~~kT~v~~~tlnP~wnE~F~f~v~~~~l~~~~L~~~V~d 120 (155)
T 2z0u_A 41 KNKQFAILIIQLSNLSALLQQQDQKVNIRVAVLPCSESTTCLFRTRPLDASDTLVFNEVFWVSMSYPALHQKTLRVDVCT 120 (155)
T ss_dssp TTTEEEEEEEEEECGGGTCCSCCSEEEEEEEEESCSCHHHHEEECCCEECCSSEEEEEEEEEECCHHHHHHCEEEEEEEE
T ss_pred CCCEEEEEEEEccCcCCcccCCCCCEEEEEEEecCCCCCccceeCCcCCCCCCCccccEEEEEcCHHHhCcCEEEEEEEE
Confidence 347899999999999998876 899999999954 27899999999999999999999864 24679999999
Q ss_pred cCCCCCCceeEEEEEeCccccc
Q 021294 274 KDTFTTDDFMGDAEIDIQPLVT 295 (314)
Q Consensus 274 ~d~~~~dd~iG~~~v~l~~l~~ 295 (314)
++.++++++||++.++|.++..
T Consensus 121 ~d~~~~~d~iG~~~i~l~~l~~ 142 (155)
T 2z0u_A 121 TDRSHLEECLGGAQISLAEVCR 142 (155)
T ss_dssp ECTTSCEEEEEEEEEECTTSCT
T ss_pred CCCCCCCcEEEEEEEEHHHccC
Confidence 9999999999999999999853
No 34
>2chd_A Rabphilin-3A, exophilin-1; C2 domain, C2A, calcium binding, synaptic EXOC metal-binding, protein transport, synapse, transport, zinc-; 1.92A {Rattus norvegicus} PDB: 2k3h_A
Probab=99.64 E-value=3.5e-16 Score=126.52 Aligned_cols=95 Identities=28% Similarity=0.546 Sum_probs=83.4
Q ss_pred eeeEEEEEEEeeecCCCCCCC-CCCcEEEEEECC-----eEeeeeeecCCCCCcccceeEEE-ecCC---CCcEEEEEEE
Q 021294 204 FVGLIKVNVVKGTNLAVRDVM-TSDPYVILALGH-----QTVKTRVIKSNLNPVWNESLMLS-IPEN---IPPLKVLVYD 273 (314)
Q Consensus 204 ~~g~L~V~v~~a~~L~~~d~~-~~dPyv~v~l~~-----~~~kT~~~~~tlnP~w~e~~~f~-v~~~---~~~L~i~v~d 273 (314)
..+.|.|+|++|++|+..+.. .+||||++.+.. ...+|+++++++||.|||.|.|. +... ...|.|+|||
T Consensus 27 ~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~~~~~~~l~i~V~d 106 (142)
T 2chd_A 27 DNSNLQCTIIRAKGLKPMDSNGLADPYVKLHLLPGASKSNKLRTKTLRNTRNPVWNETLQYHGITEEDMQRKTLRISVCD 106 (142)
T ss_dssp GGTEEEEEEEEEESCCCCCTTSCCCEEEEEEEESCCSGGGEEECCCCCSCSSCEEEEEEEEESCCHHHHHHCEEEEEEEE
T ss_pred CCCEEEEEEEEecCCCCCCCCCCCCCEEEEEEEcCCCCcceeeCCcCCCCCCCcCcCEEEEcccCHHHccCCEEEEEEEE
Confidence 447899999999999998876 899999999964 68899999999999999999998 5431 3689999999
Q ss_pred cCCCCCCceeEEEEEeCcccccccc
Q 021294 274 KDTFTTDDFMGDAEIDIQPLVTAAR 298 (314)
Q Consensus 274 ~d~~~~dd~iG~~~v~l~~l~~~~~ 298 (314)
++.++++++||++.++|.++..+..
T Consensus 107 ~d~~~~d~~iG~~~i~l~~l~~~~~ 131 (142)
T 2chd_A 107 EDKFGHNEFIGETRFSLKKLKANQR 131 (142)
T ss_dssp ECTTSCEEEEEEEEEEGGGCCTTCC
T ss_pred CCCCCCCcEEEEEEEEHHHcCCCCc
Confidence 9999999999999999999976553
No 35
>1v27_A Regulating synaptic membrane exocytosis protein 2; RAB3-interacting molecule, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.7.1.2
Probab=99.64 E-value=4.2e-16 Score=125.67 Aligned_cols=106 Identities=18% Similarity=0.381 Sum_probs=87.1
Q ss_pred eeEEEEEEEeeecCCCCCCC-CCCcEEEEEE-----CCeEeeeeeecCCCCCcccceeEEEe-cC---CCCcEEEEEEEc
Q 021294 205 VGLIKVNVVKGTNLAVRDVM-TSDPYVILAL-----GHQTVKTRVIKSNLNPVWNESLMLSI-PE---NIPPLKVLVYDK 274 (314)
Q Consensus 205 ~g~L~V~v~~a~~L~~~d~~-~~dPyv~v~l-----~~~~~kT~~~~~tlnP~w~e~~~f~v-~~---~~~~L~i~v~d~ 274 (314)
.+.|.|+|++|++|+..+.. .+||||++.+ +.+..+|+++++++||.|||.|.|.+ .. ....|.|+|||+
T Consensus 20 ~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~~kT~~~~~t~nP~wne~f~f~~~~~~~~~~~~l~i~V~d~ 99 (141)
T 1v27_A 20 GHQLIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTKTVKKTLEPKWNQTFIYSPVHRREFRERMLEITLWDQ 99 (141)
T ss_dssp TTEEEEEEEEEESCCCCSSSCCCCEEEECCCSSCCSSSSCCBCCCCSSCSSCCCCCCCEECSCCTTGGGTCEEEEEEEEB
T ss_pred CCEEEEEEEEccCCCCcCCCCCCCCEEEEEEecCCCCCcceeCccccCCCCCccccEEEEccCCHHHhcCCEEEEEEEEC
Confidence 37899999999999998876 7999999998 45788999999999999999999995 32 346899999999
Q ss_pred CCCCC--CceeEEEEEeCccccccccccCcccccCCccCC
Q 021294 275 DTFTT--DDFMGDAEIDIQPLVTAARACETPISMSPCNLG 312 (314)
Q Consensus 275 d~~~~--dd~iG~~~v~l~~l~~~~~~~~~~~~~~~~~~g 312 (314)
+.++. +++||.+.++|.++.... ...|..+....-|
T Consensus 100 d~~~~~~~~~lG~~~i~l~~l~~~~--~~~W~~L~~~~~g 137 (141)
T 1v27_A 100 ARVREEESEFLGEILIELETALLDD--EPHWYKLQTHDSG 137 (141)
T ss_dssp CSSSSCCBCCCEEEEEEGGGCCCSS--EEEEEECBCCSSC
T ss_pred CCCcCCCCceEEEEEEEccccCCCC--CCceEECcccccC
Confidence 99987 999999999999987543 3345444444333
No 36
>1a25_A CALB, protein kinase C (beta); calcium++/phospholipid binding protein, calcium-binding protein; HET: PSE; 2.70A {Rattus norvegicus} SCOP: b.7.1.2
Probab=99.64 E-value=3.3e-16 Score=127.82 Aligned_cols=92 Identities=37% Similarity=0.507 Sum_probs=82.7
Q ss_pred eeEEEEEEEeeecCCCCCCC-CCCcEEEEEEC-----CeEeeeeeecCCCCCcccceeEEEecCC--CCcEEEEEEEcCC
Q 021294 205 VGLIKVNVVKGTNLAVRDVM-TSDPYVILALG-----HQTVKTRVIKSNLNPVWNESLMLSIPEN--IPPLKVLVYDKDT 276 (314)
Q Consensus 205 ~g~L~V~v~~a~~L~~~d~~-~~dPyv~v~l~-----~~~~kT~~~~~tlnP~w~e~~~f~v~~~--~~~L~i~v~d~d~ 276 (314)
.+.|.|+|++|++|+..+.. .+||||++.+. ....+|+++++++||.|||+|.|.+... ...|.|+|||++.
T Consensus 30 ~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~L~i~V~d~d~ 109 (149)
T 1a25_A 30 REVLIVVVRDAKNLVPMDPNGLSDPYVKLKLIPDPKSESKQKTKTIKCSLNPEWNETFRFQLKESDKDRRLSVEIWDWDL 109 (149)
T ss_dssp SSEEEEEEEEEESCCCCSTTSCCCEEEEEEEESCTTCSSCEECCCCSSCSSCEEEEEEEEECCSGGGGCEEEEEEEECCS
T ss_pred CCEEEEEEEEeeCCCCCCCCCCcCeEEEEEEECCCCCcceEecceeCCCCCCcCCcEEEEEeccccCCCEEEEEEEECCC
Confidence 46899999999999998876 89999999995 4678999999999999999999998652 3579999999999
Q ss_pred CCCCceeEEEEEeCcccccc
Q 021294 277 FTTDDFMGDAEIDIQPLVTA 296 (314)
Q Consensus 277 ~~~dd~iG~~~v~l~~l~~~ 296 (314)
++++++||++.++|.++..+
T Consensus 110 ~~~~~~iG~~~i~l~~l~~~ 129 (149)
T 1a25_A 110 TSRNDFMGSLSFGISELQKA 129 (149)
T ss_dssp SSCCEEEEEEEEEHHHHTTC
T ss_pred CCCCCEEEEEEEEHHHhCcC
Confidence 99999999999999998765
No 37
>2q3x_A Regulating synaptic membrane exocytosis protein 1; C2 domain dimer, neurotransmitter release, transport protein; HET: MSE; 1.73A {Rattus norvegicus}
Probab=99.64 E-value=3.8e-16 Score=130.64 Aligned_cols=100 Identities=26% Similarity=0.371 Sum_probs=85.6
Q ss_pred eeeEEEEEEEeeecCCCCCC--CCCCcEEEEEECC-----eEeeeeeecCCCCCcccceeEEEecCCCCcEEEEEE-EcC
Q 021294 204 FVGLIKVNVVKGTNLAVRDV--MTSDPYVILALGH-----QTVKTRVIKSNLNPVWNESLMLSIPENIPPLKVLVY-DKD 275 (314)
Q Consensus 204 ~~g~L~V~v~~a~~L~~~d~--~~~dPyv~v~l~~-----~~~kT~~~~~tlnP~w~e~~~f~v~~~~~~L~i~v~-d~d 275 (314)
..+.|.|+|++|++|+..+. ..+||||++.+.. ...+|+++++++||+|||+|.|.+......|.|+|| |++
T Consensus 28 ~~~~L~V~v~~a~~L~~~d~~~g~~DPyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~L~~~V~~d~d 107 (171)
T 2q3x_A 28 KKGQLEVEVIRARSLTQKPGSKSTPAPYVKVYLLENGACIAKKKTRIARKTLDPLYQQSLVFDESPQGKVLQVIVWGDYG 107 (171)
T ss_dssp ETTEEEEEEEEEESCCCCC---CCCEEEEEEEEEETTEEEEEEECCCCCSCSSCEEEEEEECSSCCTTEEEEEEEEEECS
T ss_pred CCCEEEEEEEEeeCCCCCCcCCCCCCceEEEEEECCCccccceeCccCCCCCCCCCCcEEEEEecCCCCEEEEEEEEcCC
Confidence 35799999999999999884 3899999999843 378999999999999999999998766678999999 999
Q ss_pred CCCCCceeEEEEEeCccccccccccCcc
Q 021294 276 TFTTDDFMGDAEIDIQPLVTAARACETP 303 (314)
Q Consensus 276 ~~~~dd~iG~~~v~l~~l~~~~~~~~~~ 303 (314)
.++++++||++.++|.++..+.....|.
T Consensus 108 ~~~~d~~iG~~~i~l~~l~~~~~~~~W~ 135 (171)
T 2q3x_A 108 RMDHKCFMGVAQILLEELDLSSMVIGWY 135 (171)
T ss_dssp TTCSSEEEEEEEECGGGSCTTSCEEEEE
T ss_pred CCCCCCEEEEEEEEHHHcccCCCcceeE
Confidence 9999999999999999997554443333
No 38
>2enp_A B/K protein; C2 type 1,beta sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.63 E-value=6.3e-16 Score=125.82 Aligned_cols=104 Identities=21% Similarity=0.312 Sum_probs=85.1
Q ss_pred eeeEEEEEEEeeecCCCC-CC-------CCCCcEEEEEEC---CeEeeeeeecCCCCCcccceeEEEecC---CCCcEEE
Q 021294 204 FVGLIKVNVVKGTNLAVR-DV-------MTSDPYVILALG---HQTVKTRVIKSNLNPVWNESLMLSIPE---NIPPLKV 269 (314)
Q Consensus 204 ~~g~L~V~v~~a~~L~~~-d~-------~~~dPyv~v~l~---~~~~kT~~~~~tlnP~w~e~~~f~v~~---~~~~L~i 269 (314)
..+.|.|+|++|++|+.. +. ..+||||++.+. .+..+|+++++++||.|||+|.|.+.. ....|.|
T Consensus 24 ~~~~L~V~v~~a~~L~~~~d~~g~~~~~~~~dpyv~v~l~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~L~~ 103 (147)
T 2enp_A 24 LHNHLTVRVIEARDLPPPISHDGSRQDMAHSNPYVKICLLPDQKNSKQTGVKRKTQKPVFEERYTFEIPFLEAQRRTLLL 103 (147)
T ss_dssp TTTEEEEEEEEEECCCCSCSSCCSSCTTCCCCCEEEEEEETCCSSCEECCCCCSCSSCCCCBCCEECCCHHHHHHSEEEE
T ss_pred CCCEEEEEEEEEeCCCCccccccccccCCCCCcEEEEEEEeCCCcceEeecccCCCCCeEeeeEEEEeChHHhccCEEEE
Confidence 347999999999999974 21 278999999995 467899999999999999999999864 2357999
Q ss_pred EEEEcCCCCCCceeEEEEEeCccccccccccCcccccCC
Q 021294 270 LVYDKDTFTTDDFMGDAEIDIQPLVTAARACETPISMSP 308 (314)
Q Consensus 270 ~v~d~d~~~~dd~iG~~~v~l~~l~~~~~~~~~~~~~~~ 308 (314)
+|||++.++++++||++.++|.++...... .+|..+..
T Consensus 104 ~V~d~d~~~~~~~iG~~~i~l~~l~~~~~~-~~w~~L~~ 141 (147)
T 2enp_A 104 TVVDFDKFSRHCVIGKVSVPLCEVDLVKGG-HWWKALIP 141 (147)
T ss_dssp EEECCSTTCCSCCCEEEEEETTTSCTTTCC-CEEECCBC
T ss_pred EEEECCCCcCCcEEEEEEEechhcCCCCCc-cEEEEeec
Confidence 999999999999999999999999755433 34544443
No 39
>2bwq_A Regulating synaptic membrane exocytosis protein 2; C2 domain, neurotransmitter release, transport protein; 1.41A {Rattus norvegicus} SCOP: b.7.1.2
Probab=99.63 E-value=8.2e-16 Score=122.14 Aligned_cols=92 Identities=20% Similarity=0.441 Sum_probs=76.9
Q ss_pred eeEEEEEEEeeecCCCCCCC-CCCcEEEEEE-----CCeEeeeeeecCCCCCcccceeEEEecC----CCCcEEEEEEEc
Q 021294 205 VGLIKVNVVKGTNLAVRDVM-TSDPYVILAL-----GHQTVKTRVIKSNLNPVWNESLMLSIPE----NIPPLKVLVYDK 274 (314)
Q Consensus 205 ~g~L~V~v~~a~~L~~~d~~-~~dPyv~v~l-----~~~~~kT~~~~~tlnP~w~e~~~f~v~~----~~~~L~i~v~d~ 274 (314)
.+.|.|+|++|++|+..+.. .+||||++.+ +....+|+++++++||.|||.|.|.+.. ....|.|+|||+
T Consensus 17 ~~~L~v~v~~a~~L~~~d~~~~~dpyv~v~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~~~~~~~l~~~V~d~ 96 (129)
T 2bwq_A 17 GHQLIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTKTVKKTLEPKWNQTFIYSPVHRREFRERMLEITLWDQ 96 (129)
T ss_dssp TTEEEEEEEEEESCCCCTTSCCBCEEEEEEEESSCSGGGEEECCCCSSBSSCEEEEEEEECSCCGGGGGGCEEEEEEEEC
T ss_pred CCEEEEEEEEeeCCCCCCCCCCCCCEEEEEEecCCCCCcceecccccCCCCCccccEEEEccCCHHHhcCCeEEEEEEEC
Confidence 47899999999999998876 7899999999 4578899999999999999999999522 346899999999
Q ss_pred CCCCC--CceeEEEEEeCcccccc
Q 021294 275 DTFTT--DDFMGDAEIDIQPLVTA 296 (314)
Q Consensus 275 d~~~~--dd~iG~~~v~l~~l~~~ 296 (314)
+.++. +++||++.++|.++...
T Consensus 97 d~~~~~~~~~lG~~~i~l~~l~~~ 120 (129)
T 2bwq_A 97 ARVREEESEFLGEILIELETALLD 120 (129)
T ss_dssp -------CEEEEEEEEEGGGCCCS
T ss_pred CcCcCcCCceeEEEEEEccccCCC
Confidence 99987 99999999999998754
No 40
>3fdw_A Synaptotagmin-like protein 4; structural genomics, phospholipid binding, alternative splicing, cell membrane, cytoplasmic vesicle, membrane; 2.20A {Homo sapiens}
Probab=99.63 E-value=3.4e-16 Score=127.61 Aligned_cols=99 Identities=27% Similarity=0.422 Sum_probs=84.5
Q ss_pred eeEEEEEEEeeecCCCCC-CC-CCCcEEEEEEC-----CeEeeeeeecCCCCCcccceeEEEecCC---CCcEEEEEEEc
Q 021294 205 VGLIKVNVVKGTNLAVRD-VM-TSDPYVILALG-----HQTVKTRVIKSNLNPVWNESLMLSIPEN---IPPLKVLVYDK 274 (314)
Q Consensus 205 ~g~L~V~v~~a~~L~~~d-~~-~~dPyv~v~l~-----~~~~kT~~~~~tlnP~w~e~~~f~v~~~---~~~L~i~v~d~ 274 (314)
.+.|.|+|++|++|+..+ .. .+||||++.+. ....+|+++++++||.|||.|.|.+... ...|.|+|||+
T Consensus 22 ~~~L~V~v~~a~~L~~~d~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~~L~~~V~d~ 101 (148)
T 3fdw_A 22 TQSLVVHVKECHQLAYADEAKKRSNPYVKTYLLPDKSRQGKRKTSIKRDTVNPLYDETLRYEIPESLLAQRTLQFSVWHH 101 (148)
T ss_dssp TTEEEEEEEEEESCCCSBTTTTBCCEEEEEEEETCCSGGGEEECCCCSSCSSCEEEEEEEEECCSTTGGGCEEEEEEEEE
T ss_pred CCEEEEEEEEecCCCCcccCCCCCCeEEEEEEEcCCcccCccccccCCCCCCCcEeeEEEEEeChhHhCceEEEEEEEEC
Confidence 478999999999999887 33 89999999995 3478999999999999999999998653 34699999999
Q ss_pred CCCCCCceeEEEEEeCccccccccccCcc
Q 021294 275 DTFTTDDFMGDAEIDIQPLVTAARACETP 303 (314)
Q Consensus 275 d~~~~dd~iG~~~v~l~~l~~~~~~~~~~ 303 (314)
+.++++++||++.++|.++..+.....|.
T Consensus 102 d~~~~~~~iG~~~i~l~~l~~~~~~~~W~ 130 (148)
T 3fdw_A 102 GRFGRNTFLGEAEIQMDSWKLDKKLDHCL 130 (148)
T ss_dssp CGGGCEEEEEEEEEEHHHHHHHCCSEEEE
T ss_pred CCCcCCcEEEEEEEEcccccccCCccceE
Confidence 99999999999999999997655444333
No 41
>1wfm_A Synaptotagmin XIII; C2 domain, exocytosis, neurotransmitter release, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: b.7.1.2
Probab=99.63 E-value=2.7e-15 Score=120.91 Aligned_cols=99 Identities=17% Similarity=0.250 Sum_probs=80.4
Q ss_pred eeEEEEEEEeeecCCCCCCC-CCCcEEEEEEC---C-eEeeeeeecCCCCCcccceeEEEecCC---CCcEEEEEEEcCC
Q 021294 205 VGLIKVNVVKGTNLAVRDVM-TSDPYVILALG---H-QTVKTRVIKSNLNPVWNESLMLSIPEN---IPPLKVLVYDKDT 276 (314)
Q Consensus 205 ~g~L~V~v~~a~~L~~~d~~-~~dPyv~v~l~---~-~~~kT~~~~~tlnP~w~e~~~f~v~~~---~~~L~i~v~d~d~ 276 (314)
.+.|.|+|++|++ .+.. .+||||++.+. . ...+|+++++++||.|||+|.|.+... ...|.|+|||++.
T Consensus 25 ~~~L~V~v~~a~~---~d~~g~sDPyv~v~l~~~~~~~~~kT~v~~~tlnP~wnE~f~f~v~~~~l~~~~L~~~V~d~d~ 101 (138)
T 1wfm_A 25 KAELFVTRLEAVT---SNHDGGCDCYVQGSVANRTGSVEAQTALKKRQLHTTWEEGLVLPLAEEELPTATLTLTLRTCDR 101 (138)
T ss_dssp TTEEEEEEEEEEC---CCCSSCCCEEEEEEEEETTEEEEEECCCCCCCSSEECSSCEEEECCTTSSTTCEEEEEEEECCS
T ss_pred CCEEEEEEEEEEc---CCCCCCcceEEEEEEEcCCCcccEecccCcCCCCCcCCceEEEEecHHHcCCCEEEEEEEECCC
Confidence 4689999999993 4544 89999999993 2 357999999999999999999998652 4679999999999
Q ss_pred CCCCceeEEEEEeCccccccccccCcccccC
Q 021294 277 FTTDDFMGDAEIDIQPLVTAARACETPISMS 307 (314)
Q Consensus 277 ~~~dd~iG~~~v~l~~l~~~~~~~~~~~~~~ 307 (314)
++++++||++.++|.++..+.... .|..+.
T Consensus 102 ~~~dd~lG~~~i~l~~l~~~~~~~-~W~~L~ 131 (138)
T 1wfm_A 102 FSRHSVAGELRLGLDGTSVPLGAA-QWGELK 131 (138)
T ss_dssp SCTTSCSEEEEEESSSSSSCTTCC-EEEECC
T ss_pred CCCCcEEEEEEEEcccccCccccc-ceeeCc
Confidence 999999999999999986444333 344333
No 42
>2dmg_A KIAA1228 protein; beta-sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.62 E-value=1.9e-15 Score=122.23 Aligned_cols=102 Identities=25% Similarity=0.226 Sum_probs=83.2
Q ss_pred eeEEEEEEEeeecCCCCCCCCCCcEEEEEEC-----CeEeeeeeecCCCCCcccceeEEEecC---CCCcEEEEEEEcCC
Q 021294 205 VGLIKVNVVKGTNLAVRDVMTSDPYVILALG-----HQTVKTRVIKSNLNPVWNESLMLSIPE---NIPPLKVLVYDKDT 276 (314)
Q Consensus 205 ~g~L~V~v~~a~~L~~~d~~~~dPyv~v~l~-----~~~~kT~~~~~tlnP~w~e~~~f~v~~---~~~~L~i~v~d~d~ 276 (314)
.+.|.|+|++|++|+..+...+||||++.+. ....+|+++++++||.|||.|.|.+.. ....|.|+|||++.
T Consensus 23 ~~~L~v~v~~a~~L~~~d~~g~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~L~i~V~d~d~ 102 (142)
T 2dmg_A 23 RNKLIVVVHACRNLIAFSEDGSDPYVRMYLLPDKRRSGRRKTHVSKKTLNPVFDQSFDFSVSLPEVQRRTLDVAVKNSGG 102 (142)
T ss_dssp TTEEEEEEEEEECCCCSSTTCCCEEEEEEEESCCCSSSCEECCCCCSCSSCEEEEEEEECCCHHHHHHCEEEEEEEECCC
T ss_pred CCEEEEEEEEeECCCCCCCCCCCeeEEEEEEcCCCCCCcccCCccCCCCCCCcCceEEEEecHHHhCcCEEEEEEEECCC
Confidence 4789999999999998875449999999993 267899999999999999999999854 23589999999998
Q ss_pred CCC--CceeEEEEEeCccccccccccCccccc
Q 021294 277 FTT--DDFMGDAEIDIQPLVTAARACETPISM 306 (314)
Q Consensus 277 ~~~--dd~iG~~~v~l~~l~~~~~~~~~~~~~ 306 (314)
++. +++||.+.++|.++..+.....|..+.
T Consensus 103 ~~~~~~~~iG~~~i~l~~~~~~~~~~~W~~L~ 134 (142)
T 2dmg_A 103 FLSKDKGLLGKVLVALASEELAKGWTQWYDLT 134 (142)
T ss_dssp SSCCSCCCCEEEEEECCCSTTTTCBCCBCCCB
T ss_pred ccccCCcEEEEEEEecccccccccccceeecc
Confidence 764 579999999999987655444444333
No 43
>1rh8_A Piccolo protein; beta-sandwich, metal binding protein; NMR {Rattus norvegicus} SCOP: b.7.1.2
Probab=99.62 E-value=3.3e-16 Score=126.63 Aligned_cols=96 Identities=29% Similarity=0.530 Sum_probs=82.8
Q ss_pred eeEEEEEEEeeecCCCCCCC-CCCcEEEEEECCe--------------EeeeeeecCCCCCcccceeEEE-ecC---CCC
Q 021294 205 VGLIKVNVVKGTNLAVRDVM-TSDPYVILALGHQ--------------TVKTRVIKSNLNPVWNESLMLS-IPE---NIP 265 (314)
Q Consensus 205 ~g~L~V~v~~a~~L~~~d~~-~~dPyv~v~l~~~--------------~~kT~~~~~tlnP~w~e~~~f~-v~~---~~~ 265 (314)
.+.|.|+|++|++|+..+.. .+||||++.+... ..+|+++++++||.|||.|.|. +.. ...
T Consensus 17 ~~~L~V~v~~a~~L~~~d~~g~~Dpyv~v~~~~~~~~~~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~v~~~~l~~~ 96 (142)
T 1rh8_A 17 LGNLIIHILQARNLVPRDNNGYSDPFVKVYLLPGRGQVMVVQNASAEYKRRTKYVQKSLNPEWNQTVIYKSISMEQLMKK 96 (142)
T ss_dssp TTEEEEEEEEEESCCCCSSSSCSCCEEEEEETTSSCCCEECCCCCHHHHTTTTTTHHHHSCEEEEEEEECSCCHHHHTTC
T ss_pred CCEEEEEEEEecCCCCCCCCCCCCceEEEEEecCCCcccccccccccceeeccccCCCCCCCCCCEEEECCcCHHHccCC
Confidence 57899999999999998876 8999999999652 4789999999999999999997 542 456
Q ss_pred cEEEEEEEcCCCCCCceeEEEEEeCcccccccccc
Q 021294 266 PLKVLVYDKDTFTTDDFMGDAEIDIQPLVTAARAC 300 (314)
Q Consensus 266 ~L~i~v~d~d~~~~dd~iG~~~v~l~~l~~~~~~~ 300 (314)
.|.|+|||++.++++++||.+.++|.++..+....
T Consensus 97 ~l~i~V~d~d~~~~~~~lG~~~i~l~~l~~~~~~~ 131 (142)
T 1rh8_A 97 TLEVTVWDYDRFSSNDFLGEVLIDLSSTSHLDNTP 131 (142)
T ss_dssp EEEEEEEEECSSSCEEEEEEEEEETTSCGGGTTCC
T ss_pred EEEEEEEECCCCCCCceEEEEEEeccccccCCCCC
Confidence 89999999999999999999999999987654333
No 44
>3n5a_A Synaptotagmin-7; calcium/phospholipid binding protein, protein transport; 1.44A {Mus musculus}
Probab=99.62 E-value=9e-16 Score=123.19 Aligned_cols=94 Identities=34% Similarity=0.471 Sum_probs=81.8
Q ss_pred eeeEEEEEEEeeecCCCCCCC-CCCcEEEEEECC-----eEeeeeeecCCCCCcccceeEEEecCCC---CcEEEEEEEc
Q 021294 204 FVGLIKVNVVKGTNLAVRDVM-TSDPYVILALGH-----QTVKTRVIKSNLNPVWNESLMLSIPENI---PPLKVLVYDK 274 (314)
Q Consensus 204 ~~g~L~V~v~~a~~L~~~d~~-~~dPyv~v~l~~-----~~~kT~~~~~tlnP~w~e~~~f~v~~~~---~~L~i~v~d~ 274 (314)
..+.|.|+|++|++|+..+.. .+||||++.+.. ...+|+++++++||.|||.|.|.+.... ..|.|+|||+
T Consensus 14 ~~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~~l~~~~l~~~V~d~ 93 (138)
T 3n5a_A 14 SANSIIVNIIKARNLKAMDIGGTSDPYVKVWLMYKDKRVEKKKTVTKKRNLNPIFNESFAFDIPTEKLRETTIIITVMDK 93 (138)
T ss_dssp TTTEEEEEEEEEESCCCCBTTTBCCEEEEEEEEETTEEEEEEECCCCSSCSSCEEEEEEEEECCGGGGGGEEEEEEEEEC
T ss_pred CCCeEEEEEEEeeCCCCcCCCCCcCeEEEEEEEeCCCccceEeCccccCCCCCcCcceEEEECChhhcCceEEEEEEEEC
Confidence 347899999999999998876 899999999953 4789999999999999999999986533 5799999999
Q ss_pred CCCCCCceeEEEEEeCccccccc
Q 021294 275 DTFTTDDFMGDAEIDIQPLVTAA 297 (314)
Q Consensus 275 d~~~~dd~iG~~~v~l~~l~~~~ 297 (314)
+.++++++||++.++|.++..+.
T Consensus 94 ~~~~~~~~lG~~~i~l~~~~~~~ 116 (138)
T 3n5a_A 94 DKLSRNDVIGKIYLSWKSGPGEV 116 (138)
T ss_dssp CSSSCCEEEEEEEESSSSCHHHH
T ss_pred CCCCCCcEEEEEEEccccCChHH
Confidence 99999999999999999765443
No 45
>2cm5_A Rabphilin-3A; protein transport, zinc-finger, Ca2+ binding, metal-binding, synaptic exocytosis, C2A-C2B linker fragment, C2B, zinc, synapse; 1.28A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 2cm6_A 3rpb_A
Probab=99.61 E-value=3.1e-15 Score=124.31 Aligned_cols=91 Identities=30% Similarity=0.443 Sum_probs=81.6
Q ss_pred eeeEEEEEEEeeecCCCCCCC-CCCcEEEEEECC-----eEeeeeeecCCCCCcccceeEEEecC---CCCcEEEEEEEc
Q 021294 204 FVGLIKVNVVKGTNLAVRDVM-TSDPYVILALGH-----QTVKTRVIKSNLNPVWNESLMLSIPE---NIPPLKVLVYDK 274 (314)
Q Consensus 204 ~~g~L~V~v~~a~~L~~~d~~-~~dPyv~v~l~~-----~~~kT~~~~~tlnP~w~e~~~f~v~~---~~~~L~i~v~d~ 274 (314)
..+.|.|+|++|++|+..+.. .+||||++.+.. ...+|+++++++||.|||.|.|.+.. ....|.|+|||+
T Consensus 35 ~~~~L~V~v~~a~~L~~~d~~g~~DPyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~L~i~V~d~ 114 (166)
T 2cm5_A 35 QQGGLIVGIIRCVHLAAMDANGYSDPFVKLWLKPDMGKKAKHKTQIKKKTLNPEFNEEFFYDIKHSDLAKKSLDISVWDY 114 (166)
T ss_dssp TTTEEEEEEEEEESCCCCSTTSCCCEEEEEEEETC---CCEEECCCCCSCSSCEEEEEEEEECCGGGGGGCEEEEEEEEC
T ss_pred CCCEEEEEEEEeECCCCccCCCCCCcEEEEEEECCCCccceEeCCcccCCCCCcccceEEEEcchHhcCCCEEEEEEEEC
Confidence 457999999999999998876 899999999964 67899999999999999999999864 246899999999
Q ss_pred CCCCCCceeEEEEEeCcccc
Q 021294 275 DTFTTDDFMGDAEIDIQPLV 294 (314)
Q Consensus 275 d~~~~dd~iG~~~v~l~~l~ 294 (314)
+.++++++||.+.++|..+.
T Consensus 115 d~~~~~~~iG~~~i~l~~~~ 134 (166)
T 2cm5_A 115 DIGKSNDYIGGCQLGISAKG 134 (166)
T ss_dssp CSSSCCEEEEEEEEETTCCH
T ss_pred CCCCCCcEEEeEEEecccCC
Confidence 99999999999999999864
No 46
>1tjx_A Similar to synaptotagmini/P65; C2B domain, calcium binding, endocytosis-EX complex; HET: GOL; 1.04A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 1tjm_A* 1uov_A 1uow_A 1k5w_A 2lha_A*
Probab=99.60 E-value=2.6e-15 Score=123.80 Aligned_cols=90 Identities=31% Similarity=0.441 Sum_probs=79.7
Q ss_pred eeeEEEEEEEeeecCCCCCCC-CCCcEEEEEECC-----eEeeeeeecCCCCCcccceeEEEecCC---CCcEEEEEEEc
Q 021294 204 FVGLIKVNVVKGTNLAVRDVM-TSDPYVILALGH-----QTVKTRVIKSNLNPVWNESLMLSIPEN---IPPLKVLVYDK 274 (314)
Q Consensus 204 ~~g~L~V~v~~a~~L~~~d~~-~~dPyv~v~l~~-----~~~kT~~~~~tlnP~w~e~~~f~v~~~---~~~L~i~v~d~ 274 (314)
..+.|.|+|++|++|+..+.. .+||||++.+.. ...+|+++++++||.|||.|.|.+... ...|.|+|||+
T Consensus 23 ~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~l~i~V~d~ 102 (159)
T 1tjx_A 23 TAGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKNTLNPYYNESFSFEVPFEQIQKVQVVVTVLDY 102 (159)
T ss_dssp TTTEEEEEEEEEESCCCCSTTSCCCEEEEEEEEETTEEEEEEECCCCCSCSSCEEEEEEEEECCGGGGGGCEEEEEEEEC
T ss_pred CCCEEEEEEEEeeCCCCccCCCCCCeEEEEEEEeCCceeceeeCceecCCCCCcccceEEEEcCHHHhCCcEEEEEEEEC
Confidence 457999999999999998876 899999999942 467999999999999999999998642 35799999999
Q ss_pred CCCCCCceeEEEEEeCccc
Q 021294 275 DTFTTDDFMGDAEIDIQPL 293 (314)
Q Consensus 275 d~~~~dd~iG~~~v~l~~l 293 (314)
+.++.+++||.+.++|..+
T Consensus 103 d~~~~~~~iG~~~i~l~~~ 121 (159)
T 1tjx_A 103 DKIGKNDAIGKVFVGYNST 121 (159)
T ss_dssp CSSSCCEEEEEEEEETTCC
T ss_pred CCCCCCceEEEEEECCCCC
Confidence 9999999999999999865
No 47
>1w15_A Synaptotagmin IV; metal binding protein, endocytosis/exocytosis neurotransmitter release, transmembrane; 1.93A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 1w16_A
Probab=99.59 E-value=3.2e-15 Score=122.44 Aligned_cols=90 Identities=29% Similarity=0.406 Sum_probs=75.4
Q ss_pred eeeEEEEEEEeeecCCCCCCC-CCCcEEEEEE--CCe---EeeeeeecCCCCCcccceeEEEecCC---CCcEEEEEEEc
Q 021294 204 FVGLIKVNVVKGTNLAVRDVM-TSDPYVILAL--GHQ---TVKTRVIKSNLNPVWNESLMLSIPEN---IPPLKVLVYDK 274 (314)
Q Consensus 204 ~~g~L~V~v~~a~~L~~~d~~-~~dPyv~v~l--~~~---~~kT~~~~~tlnP~w~e~~~f~v~~~---~~~L~i~v~d~ 274 (314)
..+.|.|+|++|++|+..+.. .+||||++.+ +.. +++|+++++++||.|||+|.|.+... ...|.|+|||+
T Consensus 28 ~~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~l~v~V~d~ 107 (153)
T 1w15_A 28 TTNTLTVVVLKARHLPKSDVSGLSDPYVKVNLYHAKKRISKKKTHVKKCTPNAVFNELFVFDIPCESLEEISVEFLVLDS 107 (153)
T ss_dssp TTTEEEEEEEEEESCC------CCCEEEEEEEEETTEEEEEEECCCCCSCSSEEEEEEEEEECCSSSSTTEEEEEEEEEC
T ss_pred CCCEEEEEEEEeECCCCcCCCCCCCeEEEEEEEeCCeEeceEecCcccCCCCCeecceEEEECCHHHhCceEEEEEEEeC
Confidence 347999999999999998866 8999999999 433 67999999999999999999998653 25799999999
Q ss_pred CCCCCCceeEEEEEeCccc
Q 021294 275 DTFTTDDFMGDAEIDIQPL 293 (314)
Q Consensus 275 d~~~~dd~iG~~~v~l~~l 293 (314)
+.++++++||.+.++|...
T Consensus 108 d~~~~~~~lG~~~i~l~~~ 126 (153)
T 1w15_A 108 ERGSRNEVIGRLVLGATAE 126 (153)
T ss_dssp CTTSCCEEEEEEEESTTCC
T ss_pred CCCCCCcEEEEEEECCCCC
Confidence 9999999999999999883
No 48
>2cjt_A UNC-13 homolog A, MUNC13-1; phorbol-ester binding, neurotransmitter release, RIM, MUNC13 domains, exocytosis, metal-binding; 1.44A {Rattus norvegicus} SCOP: b.7.1.1
Probab=99.58 E-value=4.3e-15 Score=118.84 Aligned_cols=89 Identities=25% Similarity=0.343 Sum_probs=74.4
Q ss_pred eeeEEEEEEEeeecCCCCCCCCCCcEEEEEECCeEeeeeeec-CCCCCcccceeEEEecCCCCcEEEEEEEcCCCCCCce
Q 021294 204 FVGLIKVNVVKGTNLAVRDVMTSDPYVILALGHQTVKTRVIK-SNLNPVWNESLMLSIPENIPPLKVLVYDKDTFTTDDF 282 (314)
Q Consensus 204 ~~g~L~V~v~~a~~L~~~d~~~~dPyv~v~l~~~~~kT~~~~-~tlnP~w~e~~~f~v~~~~~~L~i~v~d~d~~~~dd~ 282 (314)
.++.|.|+|++|++|+. ...+||||++. .+..+|+++. +++||.|||.|.|.+......|.|+|||++ ++.|++
T Consensus 3 ~~~~L~V~V~~A~~l~~--~g~~DPYv~v~--~~~~kt~~~~~~t~nP~WnE~f~f~v~~~~~~L~~~V~D~d-~~~dd~ 77 (131)
T 2cjt_A 3 VMSLLCVGVKKAKFDGA--QEKFNTYVTLK--VQNVKSTTIAVRGSQPSWEQDFMFEINRLDLGLTVEVWNKG-LIWDTM 77 (131)
T ss_dssp CCEEEEEEEEEEECSSC--GGGCEEEEEEE--ETTEEEECCCEESSSCEEEEEEEEEECCCSSEEEEEEEECC-SSCEEE
T ss_pred cceEEEEEEEEeECCCC--CCCcCeEEEEE--ecCEEEeEecCCCCCceECCEEEEEEeCCCCeEEEEEEECC-CCCCCe
Confidence 45899999999998853 33789999999 3344565554 699999999999999876678999999999 889999
Q ss_pred eEEEEEeCccccccc
Q 021294 283 MGDAEIDIQPLVTAA 297 (314)
Q Consensus 283 iG~~~v~l~~l~~~~ 297 (314)
||++.++|.++....
T Consensus 78 iG~~~i~l~~l~~~~ 92 (131)
T 2cjt_A 78 VGTVWIPLRTIRQSN 92 (131)
T ss_dssp EEEEEEEGGGSCBCS
T ss_pred EEEEEEEHHHhhhcC
Confidence 999999999986543
No 49
>2cjs_A UNC-13 homolog A, MUNC13-1; neurotransmitter transport, zinc finger, synapto phorbol-ester binding; 1.78A {Rattus norvegicus} SCOP: b.7.1.1
Probab=99.53 E-value=1.8e-14 Score=119.96 Aligned_cols=89 Identities=24% Similarity=0.338 Sum_probs=75.1
Q ss_pred eeeEEEEEEEeeecCCCCCCCCCCcEEEEEECCeEeeeeeec-CCCCCcccceeEEEecCCCCcEEEEEEEcCCCCCCce
Q 021294 204 FVGLIKVNVVKGTNLAVRDVMTSDPYVILALGHQTVKTRVIK-SNLNPVWNESLMLSIPENIPPLKVLVYDKDTFTTDDF 282 (314)
Q Consensus 204 ~~g~L~V~v~~a~~L~~~d~~~~dPyv~v~l~~~~~kT~~~~-~tlnP~w~e~~~f~v~~~~~~L~i~v~d~d~~~~dd~ 282 (314)
.++.|.|+|++|++|+ ....+||||++. .+..+|+++. +++||.|||.|.|.+......|.|+|||++ ++.|++
T Consensus 12 ~~~~L~V~V~~A~~l~--~~g~~DPYV~v~--~~~~kt~~~~~~t~nP~WnE~f~f~v~~~~~~L~~~V~D~d-~~~dd~ 86 (167)
T 2cjs_A 12 ILSLLCVGVKKAKFDG--AQEKFNTYVTLK--VQNVESTTIAVRGSQPSWEQDFMFEINRLDLGLTVEVWNKG-LIWDTM 86 (167)
T ss_dssp CCCEEEEEEEEEECSS--CGGGCEEEEEEE--ETTEEEECCCEESSSCEEEEEEEEECCCTTSEEEEEEEECC-SSCCEE
T ss_pred ceEEEEEEEEEEECCC--CCCCCCeEEEEE--ecceEEEEecCCCCCCCCCCEEEEEeeCCCCEEEEEEEECC-CCCCce
Confidence 4689999999999885 234789999999 3445676665 599999999999999876678999999999 889999
Q ss_pred eEEEEEeCccccccc
Q 021294 283 MGDAEIDIQPLVTAA 297 (314)
Q Consensus 283 iG~~~v~l~~l~~~~ 297 (314)
||++.++|.++....
T Consensus 87 iG~~~i~L~~l~~~~ 101 (167)
T 2cjs_A 87 VGTVWIPLRTIRQSN 101 (167)
T ss_dssp EEEEEEEGGGSCBCS
T ss_pred EEEEEEEHHHhcccC
Confidence 999999999986543
No 50
>3nsj_A Perforin-1; pore forming protein, immune system; HET: NAG; 2.75A {Mus musculus}
Probab=99.52 E-value=4.7e-14 Score=137.40 Aligned_cols=88 Identities=25% Similarity=0.374 Sum_probs=80.4
Q ss_pred eeeEEEEEEEeeecCCCCCCC-CCCcEEEEEECCeEeeeeeecCCCCCcccceeEEEec--CCCCcEEEEEEEcCCCCCC
Q 021294 204 FVGLIKVNVVKGTNLAVRDVM-TSDPYVILALGHQTVKTRVIKSNLNPVWNESLMLSIP--ENIPPLKVLVYDKDTFTTD 280 (314)
Q Consensus 204 ~~g~L~V~v~~a~~L~~~d~~-~~dPyv~v~l~~~~~kT~~~~~tlnP~w~e~~~f~v~--~~~~~L~i~v~d~d~~~~d 280 (314)
.++.|.|+|++|++|+. |.. .+||||+|.++.+..+|+++++++||.|||.|.|.+. .....|+|+|||+|..+.|
T Consensus 392 ~~~~L~V~V~~A~~L~~-D~~g~sDPYV~v~l~~~~~kTkvik~tlNP~Wne~f~f~~~~~~~~~~L~~~V~D~D~~~~d 470 (540)
T 3nsj_A 392 GLAHLVVSNFRAEHLWG-DYTTATDAYLKVFFGGQEFRTGVVWNNNNPRWTDKMDFENVLLSTGGPLRVQVWDADYGWDD 470 (540)
T ss_dssp TEEEEEEEEEEEESCCC-SSCSCCCEEEEEEETTEEEECCCBCSCSSCBCCCCEEEEEEETTTCCCEEEEEEECCSSSCC
T ss_pred cccEEEEEEEEccCCCc-ccCCCcCeEEEEEECCEeeeeeeecCCCCCCCCeEEEEEEecCCCCCEEEEEEEECCCCCCC
Confidence 37899999999999998 766 8999999999999999999999999999999999863 3567899999999999999
Q ss_pred ceeEEEEEeCcc
Q 021294 281 DFMGDAEIDIQP 292 (314)
Q Consensus 281 d~iG~~~v~l~~ 292 (314)
|+||.+.++|..
T Consensus 471 D~LG~~~~~L~~ 482 (540)
T 3nsj_A 471 DLLGSCDRSPHS 482 (540)
T ss_dssp EEEEEEEECCCS
T ss_pred CEEEEEEEEeeC
Confidence 999999999873
No 51
>2r83_A Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal-binding palmitate; 2.70A {Homo sapiens} SCOP: b.7.1.2
Probab=99.50 E-value=7.4e-14 Score=125.62 Aligned_cols=95 Identities=28% Similarity=0.468 Sum_probs=83.7
Q ss_pred eeeEEEEEEEeeecCCCCCCC-CCCcEEEEEEC---CeEeeeeeecCCCCCcccceeEEEecC---CCCcEEEEEEEcCC
Q 021294 204 FVGLIKVNVVKGTNLAVRDVM-TSDPYVILALG---HQTVKTRVIKSNLNPVWNESLMLSIPE---NIPPLKVLVYDKDT 276 (314)
Q Consensus 204 ~~g~L~V~v~~a~~L~~~d~~-~~dPyv~v~l~---~~~~kT~~~~~tlnP~w~e~~~f~v~~---~~~~L~i~v~d~d~ 276 (314)
..+.|.|+|++|++|+..+.. .+||||++.++ .+..+|+++++++||.|||.|.|.+.. ....|.|+|||++.
T Consensus 17 ~~~~L~v~v~~a~~L~~~d~~~~~dpyv~v~~~~~~~~~~~T~~~~~~~nP~wne~f~f~v~~~~~~~~~l~~~V~d~d~ 96 (284)
T 2r83_A 17 QNNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVPYSELAGKTLVMAVYDFDR 96 (284)
T ss_dssp TTTEEEEEEEEEECCCCCSSSSSCCEEEEEEEETCTTSCEECCCCCSCSSCEEEEEEEECCCGGGCTTCEEEEEEEECCS
T ss_pred CCCEEEEEEEEeeCCCCCCCCCCCCeEEEEEEEcCCCceEeCCcccCCCCCeeCceEEEEechHHhCcCEEEEEEEECCC
Confidence 347999999999999998876 89999999995 357899999999999999999999864 34689999999999
Q ss_pred CCCCceeEEEEEeCcccccccc
Q 021294 277 FTTDDFMGDAEIDIQPLVTAAR 298 (314)
Q Consensus 277 ~~~dd~iG~~~v~l~~l~~~~~ 298 (314)
++.+++||++.++|.++..+..
T Consensus 97 ~~~~~~lG~~~i~l~~l~~~~~ 118 (284)
T 2r83_A 97 FSKHDIIGEFKVPMNTVDFGHV 118 (284)
T ss_dssp SSCCCEEEEEEEEGGGCCCSSC
T ss_pred CCCCceeEEEEEcchhcccCCc
Confidence 9999999999999999876543
No 52
>3jzy_A Intersectin 2; C2 domain, structural genomics consortium (SGC), endocytosis; 1.56A {Homo sapiens} PDB: 3qbv_B* 1ki1_B
Probab=99.50 E-value=7.3e-14 Score=135.79 Aligned_cols=95 Identities=32% Similarity=0.558 Sum_probs=85.9
Q ss_pred eeeEEEEEEEeeecCCCCCCC-CCCcEEEEEECCeEeeeeeecCCCCCcccceeEEEecC-CCCcEEEEEEEcCCCCCCc
Q 021294 204 FVGLIKVNVVKGTNLAVRDVM-TSDPYVILALGHQTVKTRVIKSNLNPVWNESLMLSIPE-NIPPLKVLVYDKDTFTTDD 281 (314)
Q Consensus 204 ~~g~L~V~v~~a~~L~~~d~~-~~dPyv~v~l~~~~~kT~~~~~tlnP~w~e~~~f~v~~-~~~~L~i~v~d~d~~~~dd 281 (314)
..+.|.|+|++|++|+..+.. .+||||++.++.+..+|+++++++||.|+|.|.|.+.. ....|.|+|||+|.+++|+
T Consensus 385 ~~~~l~v~v~~a~~L~~~d~~~~sdpyv~v~~~~~~~~T~~~~~t~nP~w~e~f~f~~~~~~~~~l~~~v~d~d~~~~~d 464 (510)
T 3jzy_A 385 GIGRLMVHVIEATELKACKPNGKSNPYCEISMGSQSYTTRTIQDTLNPKWNFNCQFFIKDLYQDVLCLTLFDRDQFSPDD 464 (510)
T ss_dssp -CEEEEEEEEEEESCCCCSTTSCCCEEEEEEETTEEEECCCCSSCSSCEEEEEEEEEESCTTTCEEEEEEEECCSSSSCC
T ss_pred CCceEEEEeceeecCCCCCCCCCCCeEEEEEECCeeccCCccCCCCCCccCceEEEEecCCCCCEEEEEEEeCCCCCCCC
Confidence 458999999999999998876 89999999999999999999999999999999999865 4467999999999999999
Q ss_pred eeEEEEEeCcccccccc
Q 021294 282 FMGDAEIDIQPLVTAAR 298 (314)
Q Consensus 282 ~iG~~~v~l~~l~~~~~ 298 (314)
+||.+.++|.++..+..
T Consensus 465 ~lG~~~~~l~~l~~~~~ 481 (510)
T 3jzy_A 465 FLGRTEIPVAKIRTEQE 481 (510)
T ss_dssp EEEEEEEEHHHHHHHHH
T ss_pred ceEEEEEEHHHhccccC
Confidence 99999999999876543
No 53
>1dqv_A Synaptotagmin III; beta sandwich, calcium ION, C2 domain, endocytosis/exocytosis complex; 3.20A {Rattus rattus} SCOP: b.7.1.2 b.7.1.2 PDB: 3hn8_A
Probab=99.47 E-value=1.5e-13 Score=124.61 Aligned_cols=92 Identities=30% Similarity=0.537 Sum_probs=80.2
Q ss_pred eeeEEEEEEEeeecCCCCCCC-CCCcEEEEEE---CCeEeeeeeecCCCCCcccceeEEEecC---CCCcEEEEEEEcCC
Q 021294 204 FVGLIKVNVVKGTNLAVRDVM-TSDPYVILAL---GHQTVKTRVIKSNLNPVWNESLMLSIPE---NIPPLKVLVYDKDT 276 (314)
Q Consensus 204 ~~g~L~V~v~~a~~L~~~d~~-~~dPyv~v~l---~~~~~kT~~~~~tlnP~w~e~~~f~v~~---~~~~L~i~v~d~d~ 276 (314)
..+.|.|+|++|++|+..+.. .+||||++.+ +.+..+|+++++++||.|+|.|.|.+.. ....|.|+|||++.
T Consensus 18 ~~~~L~v~v~~a~~L~~~d~~g~~dPyv~v~l~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~L~~~V~d~d~ 97 (296)
T 1dqv_A 18 GSDQLVVRILQALDLPAKDSNGFSDPYVKIYLLPDRKKKFQTKVHRKTLNPIFNETFQFSVPLAELAQRKLHFSVYDFDR 97 (296)
T ss_dssp SSCEEEEEEEEEECCCCCSTTSCCCEEEEEECTTSTTSCEECCCCCSCSSCEEEEEEEEECCGGGGSSCCCEEEEEECCS
T ss_pred CCCEEEEEEEEeECCCCcCCCCCcCeEEEEEEEcCCCeeEeCCccCCCCCCcEeeEEEEEecHHHhcCCEEEEEEEEcCC
Confidence 357899999999999998876 8999999999 5678899999999999999999999853 24589999999999
Q ss_pred CCCCceeEEEEEe-Cccccc
Q 021294 277 FTTDDFMGDAEID-IQPLVT 295 (314)
Q Consensus 277 ~~~dd~iG~~~v~-l~~l~~ 295 (314)
++++++||++.++ +.++..
T Consensus 98 ~~~~~~iG~~~i~~l~~~~~ 117 (296)
T 1dqv_A 98 FSRHDLIGQVVLDNLLELAE 117 (296)
T ss_dssp SSCCCEEEEEECCCTTGGGS
T ss_pred CCCCceEEEEEecccccccc
Confidence 9999999999996 545543
No 54
>2r83_A Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal-binding palmitate; 2.70A {Homo sapiens} SCOP: b.7.1.2
Probab=99.43 E-value=3.5e-13 Score=121.14 Aligned_cols=90 Identities=31% Similarity=0.428 Sum_probs=79.0
Q ss_pred eeEEEEEEEeeecCCCCCCC-CCCcEEEEEEC--C---eEeeeeeecCCCCCcccceeEEEecCC---CCcEEEEEEEcC
Q 021294 205 VGLIKVNVVKGTNLAVRDVM-TSDPYVILALG--H---QTVKTRVIKSNLNPVWNESLMLSIPEN---IPPLKVLVYDKD 275 (314)
Q Consensus 205 ~g~L~V~v~~a~~L~~~d~~-~~dPyv~v~l~--~---~~~kT~~~~~tlnP~w~e~~~f~v~~~---~~~L~i~v~d~d 275 (314)
.+.|.|.|++|++|+..+.. .+||||++.+. + .+.+|+++++++||.|||.|.|.+... ...|.|+|||++
T Consensus 149 ~~~l~v~v~~a~~L~~~d~~~~~dpyv~v~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~l~i~V~d~d 228 (284)
T 2r83_A 149 AGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKNTLNPYYNESFSFEVPFEQIQKVQVVVTVLDYD 228 (284)
T ss_dssp TTEEEEEEEEEESCCCCSTTSCCCEEEEEEEEETTEEEEEEECCCCCSCSSCEEEEEEEEECCTTTGGGEEEEEEEEECC
T ss_pred CCceEEEEEEeECCCCcCCCCCcCeEEEEEEEeCCcEeeeeccceecCCCCCEEceeEEEeCCHHHhCceEEEEEEEeCC
Confidence 46899999999999998876 89999999983 2 467899999999999999999998653 346999999999
Q ss_pred CCCCCceeEEEEEeCcccc
Q 021294 276 TFTTDDFMGDAEIDIQPLV 294 (314)
Q Consensus 276 ~~~~dd~iG~~~v~l~~l~ 294 (314)
.++++++||++.+++..+.
T Consensus 229 ~~~~~~~iG~~~i~l~~~~ 247 (284)
T 2r83_A 229 KIGKNDAIGKVFVGYNSTG 247 (284)
T ss_dssp SSSCCCEEEEEEEETTCCH
T ss_pred CCCCCcEEEEEEECCCCCC
Confidence 9999999999999998754
No 55
>3l9b_A Otoferlin; C2-domain, beta-sheets, cell membrane, synaptic V hearing, membrane, synapse, transmembrane, membrane protein; 1.95A {Rattus norvegicus}
Probab=99.38 E-value=1.3e-12 Score=104.18 Aligned_cols=89 Identities=13% Similarity=0.250 Sum_probs=80.0
Q ss_pred EEEEEEEeeecCCCCCCCCCCcEEEEEECCeEeeeeeec-CCCCCcccceeEEEecC---CCCcEEEEEEEcCCCCCCce
Q 021294 207 LIKVNVVKGTNLAVRDVMTSDPYVILALGHQTVKTRVIK-SNLNPVWNESLMLSIPE---NIPPLKVLVYDKDTFTTDDF 282 (314)
Q Consensus 207 ~L~V~v~~a~~L~~~d~~~~dPyv~v~l~~~~~kT~~~~-~tlnP~w~e~~~f~v~~---~~~~L~i~v~d~d~~~~dd~ 282 (314)
-|.|.|.+|++|+. ..|||+++.+.+.+++|++++ +++||+|||.|.+++.. ..+.|.|.|+|++.++++.+
T Consensus 22 sL~V~l~~a~~Lpg----~~Dp~akv~FRg~k~kTkvi~~~~~npvfnE~F~wpl~~~ld~~e~L~v~V~d~~~v~~nrl 97 (144)
T 3l9b_A 22 ALIVHLKTVSELRG----RADRIAKVTFRGQSFYSRVLENCEDVADFDETFRWPVASSIDRNEVLEIQIFNYSKVFSNKL 97 (144)
T ss_dssp EEEEEEEEEESCCS----CEEEEEEEEETTEEEECCCEEEECSCEEEEEEEEEEESSCCCTTCEEEEEEEEECTTSCCEE
T ss_pred EEEEEEEEecCCCC----CCCCeEEEEEeccceeeEEeccCCCCceEcceEEecCCCCCCCCCEEEEEEEECccccCCCE
Confidence 47899999999984 679999999999999999998 69999999999999854 45789999999999999999
Q ss_pred eEEEEEeCccccccccc
Q 021294 283 MGDAEIDIQPLVTAARA 299 (314)
Q Consensus 283 iG~~~v~l~~l~~~~~~ 299 (314)
||++.++|+++......
T Consensus 98 IG~~~i~Lq~lv~~~~l 114 (144)
T 3l9b_A 98 IGTFRMVLQKVVEENRV 114 (144)
T ss_dssp EEEEEEESHHHHHHSEE
T ss_pred EEEEEEEhHHhccCCeE
Confidence 99999999998866543
No 56
>1djx_A PLC-D1, phosphoinositide-specific phospholipase C, isozyme delta1; phosphoric diester hydrolase, hydrolase, lipid degradation, transducer; HET: I3P; 2.30A {Rattus norvegicus} SCOP: a.39.1.7 b.7.1.1 c.1.18.1 PDB: 1djg_A 1dji_A 1djh_A* 1djw_A* 1djy_A* 1djz_A* 2isd_A 1qas_A 1qat_A
Probab=99.37 E-value=2.3e-12 Score=127.99 Aligned_cols=95 Identities=24% Similarity=0.448 Sum_probs=83.8
Q ss_pred eeeEEEEEEEeeecCCCCCC---CCCCcEEEEEECC-----eEeeeeeecCC-CCCcccceeEEEecC-CCCcEEEEEEE
Q 021294 204 FVGLIKVNVVKGTNLAVRDV---MTSDPYVILALGH-----QTVKTRVIKSN-LNPVWNESLMLSIPE-NIPPLKVLVYD 273 (314)
Q Consensus 204 ~~g~L~V~v~~a~~L~~~d~---~~~dPyv~v~l~~-----~~~kT~~~~~t-lnP~w~e~~~f~v~~-~~~~L~i~v~d 273 (314)
..+.|.|+|++|++|+..+. ..+||||+|.+.+ .+.+|++++++ +||+|||+|.|.+.. ....|.|+|||
T Consensus 495 ~~~~L~V~Vi~A~~L~~~d~~~~~~~DPYV~V~l~g~~~d~~~~kTkvi~~ng~NP~WnE~f~F~v~~~el~~L~~~V~D 574 (624)
T 1djx_A 495 RPERLRVRIISGQQLPKVNKNKNSIVDPKVIVEIHGVGRDTGSRQTAVITNNGFNPRWDMEFEFEVTVPDLALVRFMVED 574 (624)
T ss_dssp CCEEEEEEEEEEESCCCCSSCSSSCCCEEEEEEEESSGGGCEEEECCCCTTCSSSCEEEEEEEEEESCGGGCEEEEEEEE
T ss_pred cceEEEEEEEEcCCCCcccccccCCCCcEEEEEEecCCCCcceeecccccCCCCCCccCceEEEEEecCCCCEEEEEEEE
Confidence 45899999999999998873 3899999999933 67899999997 999999999999865 34679999999
Q ss_pred cCCCCCCceeEEEEEeCcccccccc
Q 021294 274 KDTFTTDDFMGDAEIDIQPLVTAAR 298 (314)
Q Consensus 274 ~d~~~~dd~iG~~~v~l~~l~~~~~ 298 (314)
+|.++.+++||++.++|..|..+..
T Consensus 575 ~D~~~~dd~iG~~~ipl~~L~~G~r 599 (624)
T 1djx_A 575 YDSSSKNDFIGQSTIPWNSLKQGYR 599 (624)
T ss_dssp CCSSSCCEEEEEEEEEGGGBCCEEE
T ss_pred cCCCCCCceeEEEEEEHHHcCCCcE
Confidence 9999999999999999999987754
No 57
>1cjy_A CPLA2, protein (cytosolic phospholipase A2); lipid-binding, hydrolase; HET: MES; 2.50A {Homo sapiens} SCOP: b.7.1.1 c.19.1.2 PDB: 1bci_A
Probab=99.37 E-value=5.8e-13 Score=133.77 Aligned_cols=98 Identities=23% Similarity=0.459 Sum_probs=85.9
Q ss_pred eeeEEEEEEEeeecCCC---CCCC-CCCcEEEEEEC---CeEeeeeeecCCCCCcccceeEEEecC-CCCcEEEEEEEcC
Q 021294 204 FVGLIKVNVVKGTNLAV---RDVM-TSDPYVILALG---HQTVKTRVIKSNLNPVWNESLMLSIPE-NIPPLKVLVYDKD 275 (314)
Q Consensus 204 ~~g~L~V~v~~a~~L~~---~d~~-~~dPyv~v~l~---~~~~kT~~~~~tlnP~w~e~~~f~v~~-~~~~L~i~v~d~d 275 (314)
..+.|.|+|++|++|+. .|.. .+||||++.++ ..+.+|+++++++||+|||+|.|.+.. ....|.|+|||+|
T Consensus 16 ~~g~L~V~Vi~A~nL~~~~~~D~~g~sDPYV~V~l~~~~~~k~kTkvik~tlNPvWNEtF~F~v~~~~~~~L~~~V~D~D 95 (749)
T 1cjy_A 16 YSHKFTVVVLRATKVTKGAFGDMLDTPDPYVELFISTTPDSRKRTRHFNNDINPVWNETFEFILDPNQENVLEITLMDAN 95 (749)
T ss_dssp CCEEEEEEEEEEECCCSCHHHHHHCCCCEEEEEECTTSTTCCEECCCCTTCSSCEEEEEEEEEECTTSCCBCEEEEEECC
T ss_pred CccEEEEEEEEEECCCCccccCCCCCcCeEEEEEEecCCCCeEecceEcCCCCCeeeeEEEEEecCCCCCEEEEEEEECC
Confidence 46899999999999998 6654 79999999997 468899999999999999999999976 5678999999999
Q ss_pred CCCCCceeEEEEEeCccccccccccCc
Q 021294 276 TFTTDDFMGDAEIDIQPLVTAARACET 302 (314)
Q Consensus 276 ~~~~dd~iG~~~v~l~~l~~~~~~~~~ 302 (314)
.++ +++||++.++|.+|..+.....|
T Consensus 96 ~~~-ddfIG~v~I~L~~L~~g~~~~~w 121 (749)
T 1cjy_A 96 YVM-DETLGTATFTVSSMKVGEKKEVP 121 (749)
T ss_dssp SSS-CEEEEEECCBSTTSCTTCCCCEE
T ss_pred CCC-CceeEEEEEEHHHcCCCCceEEE
Confidence 999 99999999999999766544433
No 58
>1dqv_A Synaptotagmin III; beta sandwich, calcium ION, C2 domain, endocytosis/exocytosis complex; 3.20A {Rattus rattus} SCOP: b.7.1.2 b.7.1.2 PDB: 3hn8_A
Probab=99.35 E-value=3.4e-13 Score=122.31 Aligned_cols=91 Identities=30% Similarity=0.476 Sum_probs=80.4
Q ss_pred eeEEEEEEEeeecCCCCCCC-CCCcEEEEEEC--C---eEeeeeeecCCCCCcccceeEEEecCC---CCcEEEEEEEcC
Q 021294 205 VGLIKVNVVKGTNLAVRDVM-TSDPYVILALG--H---QTVKTRVIKSNLNPVWNESLMLSIPEN---IPPLKVLVYDKD 275 (314)
Q Consensus 205 ~g~L~V~v~~a~~L~~~d~~-~~dPyv~v~l~--~---~~~kT~~~~~tlnP~w~e~~~f~v~~~---~~~L~i~v~d~d 275 (314)
.+.|.|.|++|++|+..+.. .+||||++.+. + .+.+|+++++++||.|||.|.|.+... ...|.|+|||++
T Consensus 151 ~~~l~v~v~~a~~L~~~d~~g~~Dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~L~i~V~d~d 230 (296)
T 1dqv_A 151 AGLLTVTIIKASNLKAMDLTGFSDPYVKASLISEGRRLKKRKTSIKKNTLNPTYNEALVFDVAPESVENVGLSIAVVDYD 230 (296)
T ss_dssp TTEEEEEEEEEESCCCCSSSSCCCEEEEECCCTTCCTTSCEECCCCCSCSSCEEEECCCCCCCSGGGGSCCCCCEEEECC
T ss_pred cceeEEEEEEeecCCccCCCCCCCcEEEEEEEeCCcCccceecceecCCCCCeECceEEEEcCHHHccCcEEEEEEEeCC
Confidence 47999999999999998876 78999999995 2 567999999999999999999998653 357999999999
Q ss_pred CCCCCceeEEEEEeCccccc
Q 021294 276 TFTTDDFMGDAEIDIQPLVT 295 (314)
Q Consensus 276 ~~~~dd~iG~~~v~l~~l~~ 295 (314)
.++.+++||.+.+++..+..
T Consensus 231 ~~~~~~~iG~~~i~l~~~~~ 250 (296)
T 1dqv_A 231 CIGHNEVIGVCRVGPEAADP 250 (296)
T ss_dssp SSSCCEEEEECCCSSCTTCH
T ss_pred CCCCCceEEEEEECCccCCc
Confidence 99999999999999987754
No 59
>3pfq_A PKC-B, PKC-beta, protein kinase C beta type; phosphorylation, transferase; HET: TPO SEP ANP; 4.00A {Rattus norvegicus} PDB: 1tbn_A 1tbo_A 2e73_A
Probab=99.16 E-value=3.7e-11 Score=120.75 Aligned_cols=93 Identities=38% Similarity=0.528 Sum_probs=82.4
Q ss_pred eeEEEEEEEeeecCCCCCCC-CCCcEEEEEE-----CCeEeeeeeecCCCCCcccceeEEEecC--CCCcEEEEEEEcCC
Q 021294 205 VGLIKVNVVKGTNLAVRDVM-TSDPYVILAL-----GHQTVKTRVIKSNLNPVWNESLMLSIPE--NIPPLKVLVYDKDT 276 (314)
Q Consensus 205 ~g~L~V~v~~a~~L~~~d~~-~~dPyv~v~l-----~~~~~kT~~~~~tlnP~w~e~~~f~v~~--~~~~L~i~v~d~d~ 276 (314)
.+.|.|+|++|++|+.++.. .+||||++.+ ...+.+|+++++++||.|||.|.|.+.. ....|.|+|||++.
T Consensus 171 ~~~L~V~v~~a~~L~~~d~~g~sDPyvkv~l~p~~~~~~k~kT~v~~~tlnP~wne~f~f~~~~~~~~~~L~v~v~d~d~ 250 (674)
T 3pfq_A 171 REVLIVVVRDAKNLVPMDPNGLSDPYVKLKLIPDPKSESKQKTKTIKSSLNPEWNETFRFQLKESDKDRRLSVEIWDWDL 250 (674)
T ss_dssp SSEEEEEEEEEESCCCCSTTSSCCEEEEEEEESCSSCCSCEECCCCSSCSSCEEEEEEEEECCSTTTTCEEEEEEEECCS
T ss_pred cceeeeeeecccccCCCCcccccCcccccccccCccccccccccccccccCCCccceeeeecccCCccceeeeEEeeccc
Confidence 46899999999999998877 8999999999 4467899999999999999999999864 34569999999999
Q ss_pred CCCCceeEEEEEeCccccccc
Q 021294 277 FTTDDFMGDAEIDIQPLVTAA 297 (314)
Q Consensus 277 ~~~dd~iG~~~v~l~~l~~~~ 297 (314)
.+.+++||.+.++|.++....
T Consensus 251 ~~~dd~iG~~~i~l~~l~~~~ 271 (674)
T 3pfq_A 251 TSRNDFMGSLSFGISELQKAG 271 (674)
T ss_dssp SSCCEECCBCCCBTTHHHHCC
T ss_pred ccccccccccccchhhhccCC
Confidence 999999999999999887543
No 60
>3bxj_A RAS GTPase-activating protein syngap; GTPase activation, membrane, phosphoprotein, SH3-binding, signaling protein; 3.00A {Rattus norvegicus}
Probab=99.16 E-value=3.3e-12 Score=123.41 Aligned_cols=99 Identities=13% Similarity=0.206 Sum_probs=12.8
Q ss_pred eeeeEEEEEEEeeecCCCCCCCCCCcEEEEEECCe-EeeeeeecCC---CCCcccceeEEEecCCCCcEEEEEEEc-C--
Q 021294 203 EFVGLIKVNVVKGTNLAVRDVMTSDPYVILALGHQ-TVKTRVIKSN---LNPVWNESLMLSIPENIPPLKVLVYDK-D-- 275 (314)
Q Consensus 203 e~~g~L~V~v~~a~~L~~~d~~~~dPyv~v~l~~~-~~kT~~~~~t---lnP~w~e~~~f~v~~~~~~L~i~v~d~-d-- 275 (314)
...+.|.|+|++|++|+.++ ||||++.++++ ..+|++++++ +||.|||.|.|.+.+....|.|+|||. +
T Consensus 8 r~~~~L~V~VieAk~L~~~d----dpYv~v~l~~~~~~kT~v~~kt~~glnP~WnE~F~f~~~~~~~~L~v~V~d~~d~~ 83 (483)
T 3bxj_A 8 RVDNVLKLWIIEARELPPKK----RYYCELCLDDMLYARTTSKPRSASGDTVFWGEHFEFNNLPAVRALRLHLYRDSDKK 83 (483)
T ss_dssp EEEECC-------------------------------------------------CCEECC-------------------
T ss_pred eeccEEEEEEEEcCCcCCCC----CCeEEEEECCeEEeeeeEEeCCCCCCCCccccEEEEecCCCccEEEEEEEecCCcc
Confidence 45678999999999999877 99999999765 5699999999 999999999998655457899999994 4
Q ss_pred -CCCCCceeEEEEEeCccccccccccCcccc
Q 021294 276 -TFTTDDFMGDAEIDIQPLVTAARACETPIS 305 (314)
Q Consensus 276 -~~~~dd~iG~~~v~l~~l~~~~~~~~~~~~ 305 (314)
..+++++||.+.+++..+..+.....|..+
T Consensus 84 ~~~~~d~~lG~v~i~l~~l~~~~~~~~W~~L 114 (483)
T 3bxj_A 84 RKKDKAGYVGLVTVPVATLAGRHFTEQWYPV 114 (483)
T ss_dssp -----------------------CCEECC--
T ss_pred ccCCCCceEEEEEEEHHHhcCCCCCCeEEEC
Confidence 367899999999999999866544444433
No 61
>3qr0_A Phospholipase C-beta (PLC-beta); PH domain, EF hand, C2 domain, TIM barrel domain, hydrolase, calcium binding, phospholipid binding; 2.00A {Sepia officinalis} PDB: 3qr1_A
Probab=99.03 E-value=8.9e-10 Score=111.76 Aligned_cols=88 Identities=16% Similarity=0.451 Sum_probs=74.7
Q ss_pred eeEEEEEEEeeecCCCCCCCCCCcEEEEEECC-------eEeeeeeecC-CCCCcccce-eEEE-ecC-CCCcEEEEEEE
Q 021294 205 VGLIKVNVVKGTNLAVRDVMTSDPYVILALGH-------QTVKTRVIKS-NLNPVWNES-LMLS-IPE-NIPPLKVLVYD 273 (314)
Q Consensus 205 ~g~L~V~v~~a~~L~~~d~~~~dPyv~v~l~~-------~~~kT~~~~~-tlnP~w~e~-~~f~-v~~-~~~~L~i~v~d 273 (314)
.+.|.|+|++|++|+.. ..||||+|.+.+ ++++|+++++ ++||+|||+ |.|. +.. ....|+|+|||
T Consensus 649 ~~~L~V~Visaq~L~~~---~~DPYV~V~l~g~p~d~~~~k~kTkvv~~nglNPvWNE~~F~F~~v~~pela~Lrf~V~D 725 (816)
T 3qr0_A 649 AGTIEIKIISAQFLSDK---QISSYVEVEMYGLPTDTVRKKFKTKIIENNGMDPYYDEKVFVFKKVVLPDLAVVRIIVSE 725 (816)
T ss_dssp CEEEEEEEEEEECCCSS---CCCEEEEEEEESSGGGCEEEEEECCCBCSCSSCCBCCCCCEEEEEESCGGGCEEEEEEEE
T ss_pred ceEEEEEEEEcccCCCC---CCCCeEEEEEeCCCcccccceeeeEEecCCCCCCeEcCceeEEccccCCCccEEEEEEEe
Confidence 47899999999999854 579999999943 5679999886 599999998 9998 643 44679999999
Q ss_pred cCCCCCCceeEEEEEeCccccccccc
Q 021294 274 KDTFTTDDFMGDAEIDIQPLVTAARA 299 (314)
Q Consensus 274 ~d~~~~dd~iG~~~v~l~~l~~~~~~ 299 (314)
++ +++||++.++|..|..|.++
T Consensus 726 ~d----ddfiG~~~ipL~~L~~GyR~ 747 (816)
T 3qr0_A 726 EN----GKFIGHRVMPLDGIKPGYRH 747 (816)
T ss_dssp TT----SCEEEEEEEESTTCCCEEEE
T ss_pred cC----CCeeeEEEEEHHHcCCcceE
Confidence 85 79999999999999988764
No 62
>3ohm_B 1-phosphatidylinositol-4,5-bisphosphate phosphodi beta-3; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Homo sapiens}
Probab=99.00 E-value=8.6e-10 Score=112.55 Aligned_cols=88 Identities=19% Similarity=0.443 Sum_probs=73.8
Q ss_pred eEEEEEEEeeecCCCCCCCCCCcEEEEEECC------eEeeeeeecC-CCCCcccc-eeEEE-ecC-CCCcEEEEEEEcC
Q 021294 206 GLIKVNVVKGTNLAVRDVMTSDPYVILALGH------QTVKTRVIKS-NLNPVWNE-SLMLS-IPE-NIPPLKVLVYDKD 275 (314)
Q Consensus 206 g~L~V~v~~a~~L~~~d~~~~dPyv~v~l~~------~~~kT~~~~~-tlnP~w~e-~~~f~-v~~-~~~~L~i~v~d~d 275 (314)
..|.|+|++|++|+.. .+||||+|.+.+ .+++|+++++ ++||+||| .|.|. +.. ....|+|+|||++
T Consensus 725 ~~L~V~Visaq~L~~~---~~DPYV~V~l~g~p~D~~~k~kTkvi~~NglNPvWnEe~F~F~~V~~pela~Lrf~V~D~d 801 (885)
T 3ohm_B 725 NALRVKVISGQFLSDR---KVGIYVEVDMFGLPVDTRRKYRTRTSQGNSFNPVWDEEPFDFPKVVLPTLASLRIAAFEEG 801 (885)
T ss_dssp EEEEEEEEEEESCCSS---CCCEEEEEEEESSTTTCBCCCCCCCCSSCSSSCBCCCCCEEEEEESCGGGCEEEEEEEETT
T ss_pred eEEEEEEEEeccCccc---CCCcEEEEEEeCCCcccccceeeEEeeCCCcCCeeccceeEEeeEEcCCcCEEEEEEEcCC
Confidence 4799999999999863 579999999943 3579999986 59999999 69998 643 4467999999987
Q ss_pred CCCCCceeEEEEEeCcccccccccc
Q 021294 276 TFTTDDFMGDAEIDIQPLVTAARAC 300 (314)
Q Consensus 276 ~~~~dd~iG~~~v~l~~l~~~~~~~ 300 (314)
+++||++.++|..|..|.++.
T Consensus 802 ----ddfiG~~~lpL~~L~~GyR~v 822 (885)
T 3ohm_B 802 ----GKFVGHRILPVSAIRSGYHYV 822 (885)
T ss_dssp ----TEEEEEEEEETTTCCCEEEEE
T ss_pred ----ccEEeeEEEEHHHcCCCceEE
Confidence 799999999999999887653
No 63
>2zkm_X 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase beta-2; phospholipase C, phosphoinositide phospholipase, PLC-beta-2, calcium, coiled coil; 1.62A {Homo sapiens} SCOP: a.39.1.7 b.7.1.1 b.55.1.1 c.1.18.1 PDB: 2fju_B
Probab=98.94 E-value=2.6e-09 Score=108.71 Aligned_cols=89 Identities=26% Similarity=0.523 Sum_probs=73.6
Q ss_pred eeeEEEEEEEeeecCCCCCCCCCCcEEEEEE-C---C--eEeeee-eecC-CCCCcccc-eeEE-EecC-CCCcEEEEEE
Q 021294 204 FVGLIKVNVVKGTNLAVRDVMTSDPYVILAL-G---H--QTVKTR-VIKS-NLNPVWNE-SLML-SIPE-NIPPLKVLVY 272 (314)
Q Consensus 204 ~~g~L~V~v~~a~~L~~~d~~~~dPyv~v~l-~---~--~~~kT~-~~~~-tlnP~w~e-~~~f-~v~~-~~~~L~i~v~ 272 (314)
..+.|.|+|++|++|+.. .+||||+|.+ | . ++++|+ ++++ ++||+||| .|.| .+.. ....|+|.||
T Consensus 676 ~~~~L~V~Visa~~L~~~---~~DPYV~V~l~g~p~d~~~k~kTk~vv~~n~~NPvWnEe~f~F~~v~~~el~~Lr~~V~ 752 (799)
T 2zkm_X 676 VATTLSITVISGQFLSER---SVRTYVEVELFGLPGDPKRRYRTKLSPSTNSINPVWKEEPFVFEKILMPELASLRVAVM 752 (799)
T ss_dssp TCEEEEEEEEEEESCCSS---CCCEEEEEEEECCTTSCCCCEECCCCSSSCCSSCBCCCCCEEEEEESSGGGCEEEEEEE
T ss_pred eeeeEEEEEEeccccCcc---CCCcEEEEEEEecCCCcccceeecccccCCCCCCeeecceEEEEEEccCCccEEEEEEE
Confidence 357899999999999853 5799999999 3 1 357899 7765 69999999 6999 7753 4457999999
Q ss_pred EcCCCCCCceeEEEEEeCccccccccc
Q 021294 273 DKDTFTTDDFMGDAEIDIQPLVTAARA 299 (314)
Q Consensus 273 d~d~~~~dd~iG~~~v~l~~l~~~~~~ 299 (314)
|++ +++||++.++|..|..|...
T Consensus 753 D~d----~d~iG~~~ipl~~L~~G~r~ 775 (799)
T 2zkm_X 753 EEG----NKFLGHRIIPINALNSGYHH 775 (799)
T ss_dssp ETT----TEEEEEEEEEGGGBCCEEEE
T ss_pred EeC----CCccceEeeehhhcCCCcEE
Confidence 986 79999999999999887654
No 64
>1yrk_A NPKC-delta, protein kinase C, delta type; C2 domain, protein binding; HET: PTR; 1.70A {Homo sapiens} PDB: 1bdy_A
Probab=98.24 E-value=8.6e-06 Score=63.08 Aligned_cols=87 Identities=10% Similarity=0.200 Sum_probs=64.6
Q ss_pred eeEEEEEEEeeecCCCCCCC-CCCcEEEEEECCeE----eee-eeecCCCCCcccceeEEEecCCCCcEEEEEEEcCCCC
Q 021294 205 VGLIKVNVVKGTNLAVRDVM-TSDPYVILALGHQT----VKT-RVIKSNLNPVWNESLMLSIPENIPPLKVLVYDKDTFT 278 (314)
Q Consensus 205 ~g~L~V~v~~a~~L~~~d~~-~~dPyv~v~l~~~~----~kT-~~~~~tlnP~w~e~~~f~v~~~~~~L~i~v~d~d~~~ 278 (314)
...|+|.+.+..--+..... ..||||.+.++... .+| ...+.|..|.|++.|.-.+.+ ...|.|.|++...
T Consensus 5 ~~flRi~~~~~~~~~~~~~~~~lDPy~aV~vdE~~~~e~g~t~~~K~kT~~P~Wne~Fd~~V~~-Gr~l~i~Vfh~a~-- 81 (126)
T 1yrk_A 5 APFLRIAFNSYELGSLQAEDEANQPFCAVKMKEALSTERGKTLVQKKPTMYPEWKSTFDAHIYE-GRVIQIVLMRAAE-- 81 (126)
T ss_dssp CCEEEEEEEEEECSSCCCSSSSCCCEEEEEEEEEEEETTEEEEECCSCCBCCCTTCEEEEECCT-TCEEEEEEEEETT--
T ss_pred CccEEeeeccccccccCCccccCCceEEEEeeeeEEcccceeecccCCCCCcCccceEEeeeeC-CEEEEEEEEcCCC--
Confidence 35677777555422222222 68999999986543 244 667779999999999988865 4789999997554
Q ss_pred CCceeEEEEEeCcccccc
Q 021294 279 TDDFMGDAEIDIQPLVTA 296 (314)
Q Consensus 279 ~dd~iG~~~v~l~~l~~~ 296 (314)
+|++.+.+.+++|+..
T Consensus 82 --~fvAn~tV~~edL~~~ 97 (126)
T 1yrk_A 82 --EPVSEVTVGVSVLAER 97 (126)
T ss_dssp --EEEEEEEEEHHHHHHH
T ss_pred --CeeeEEEEEHHHHHhh
Confidence 9999999999999854
No 65
>2enj_A NPKC-theta, protein kinase C theta type; beta-sandwich, phosphotyrosine binding, TCR, T-cell, diacylglycerol, phorbol ester, structural genomics; NMR {Homo sapiens}
Probab=98.15 E-value=7.3e-06 Score=64.31 Aligned_cols=89 Identities=11% Similarity=0.263 Sum_probs=66.7
Q ss_pred eeeeEEEEEEEeeecCCCCC--CCCCCcEEEEEECCeE----eee-eeecCCCCCcccceeEEEecCCCCcEEEEEEEcC
Q 021294 203 EFVGLIKVNVVKGTNLAVRD--VMTSDPYVILALGHQT----VKT-RVIKSNLNPVWNESLMLSIPENIPPLKVLVYDKD 275 (314)
Q Consensus 203 e~~g~L~V~v~~a~~L~~~d--~~~~dPyv~v~l~~~~----~kT-~~~~~tlnP~w~e~~~f~v~~~~~~L~i~v~d~d 275 (314)
...++|+|.+.+..--+... ....||||.|.++... .+| ...+.|..|.|++.|.-.+.+ ...|.|.|++..
T Consensus 7 ~m~~flRi~l~~~~~~~~~~~~~~~lDPY~aV~VdE~~~te~gqtl~~KkkT~~P~Wne~Fd~~V~~-Gr~l~i~Vfh~a 85 (138)
T 2enj_A 7 GMSPFLRIGLSNFDCGSCQSCQGEAVNPYCAVLVKEYVESENGQMYIQKKPTMYPPWDSTFDAHINK-GRVMQIIVKGKN 85 (138)
T ss_dssp SCCCCEEEEEEEEECCCCCCSCCCCCCCEEEEEEEEEEEETTEEEEEEEEEEECCCSSSEEEECCCS-SCEEEEEEECSS
T ss_pred ccCcceEEEeeccccCCCCCcccccCCceEEEEeeeeeeccCceeecccCCCCCccccceEeeeEEC-CeEEEEEEEcCC
Confidence 34467788876665433332 2368999999996542 456 566679999999999988865 478999999644
Q ss_pred CCCCCceeEEEEEeCcccccc
Q 021294 276 TFTTDDFMGDAEIDIQPLVTA 296 (314)
Q Consensus 276 ~~~~dd~iG~~~v~l~~l~~~ 296 (314)
. +|++.+.|.+.+|+..
T Consensus 86 ~----~fVAn~tV~~edL~~~ 102 (138)
T 2enj_A 86 V----DLISETTVELYSLAER 102 (138)
T ss_dssp C----SCCEEEEEESHHHHHH
T ss_pred C----CeeeEEEEEHHHHHhh
Confidence 3 8999999999999854
No 66
>3l4c_A Dedicator of cytokinesis protein 1; DOCK180, DOCK1, phosphoinositide specificity, guanine exchan factor, RHO GTPase, cytoskeleton, cell migration; 2.37A {Homo sapiens}
Probab=89.91 E-value=5 Score=33.91 Aligned_cols=55 Identities=15% Similarity=0.271 Sum_probs=41.4
Q ss_pred eEeeeeeecCCCCCcccceeEEEecCC---CCcEEEEEEEcCCC----CCCceeEEEEEeCc
Q 021294 237 QTVKTRVIKSNLNPVWNESLMLSIPEN---IPPLKVLVYDKDTF----TTDDFMGDAEIDIQ 291 (314)
Q Consensus 237 ~~~kT~~~~~tlnP~w~e~~~f~v~~~---~~~L~i~v~d~d~~----~~dd~iG~~~v~l~ 291 (314)
..++|.+.-++.+|.|+|++.+.++.. ...|.|+++....- ..+..+|-+.++|-
T Consensus 77 se~~S~V~YHnk~P~w~EtIKi~LP~~~~~~~HLlFtFrH~S~~~k~dk~E~pfg~a~lPL~ 138 (220)
T 3l4c_A 77 SEYKSVIYYQVKQPRWFETVKVAIPIEDVNRSHLRFTFRHRSSQDSKDKSEKIFALAFVKLM 138 (220)
T ss_dssp SCEECCCCTTCSSCCCCEEEEEEECTTSSTTEEEEEEEEECCCCSSCCCCCCEEEEEEEESB
T ss_pred eeEEEEEEEcCCCCCceEeEEEeeChhhcCCeEEEEEEEEecccccccccCCeeEEEEEEcc
Confidence 346788888899999999999999763 34688998875432 12347899999975
No 67
>1gnf_A Transcription factor GATA-1; zinc finger, transcription regulation; NMR {Mus musculus} SCOP: g.39.1.1 PDB: 1y0j_A 2l6y_A 2l6z_A
Probab=89.44 E-value=0.3 Score=30.64 Aligned_cols=39 Identities=31% Similarity=0.782 Sum_probs=32.3
Q ss_pred CCCCCCcCCCCC-CCCeEEecccceechhhHHHHhhcCCc
Q 021294 27 PGNRHCADCGSP-DPKWVSLSTGVFICIKCSGIHRSLGVH 65 (314)
Q Consensus 27 ~~N~~C~dC~~~-~p~w~s~~~g~~~C~~C~~~Hr~lg~~ 65 (314)
.....|++|++. -|.|=.-..|..+|-.|.-.++..|.+
T Consensus 2 ~~~~~C~~C~tt~Tp~WR~gp~G~~LCNaCGl~~k~~~~~ 41 (46)
T 1gnf_A 2 SEARECVNCGATATPLWRRDRTGHYLCNACGLYHKMNGQN 41 (46)
T ss_dssp CCSCCCTTTCCCCCSSCBCCTTCCCBCSHHHHHHHHTCSC
T ss_pred CCCCCCCCcCCCCCCcCccCCCCCccchHHHHHHHHcCCC
Confidence 356899999986 578999889999999998888776653
No 68
>2vut_I AREA, nitrogen regulatory protein AREA; transcription regulation, protein-protein interactions, metal-binding, nitrate assimilation; HET: NAD; 2.3A {Emericella nidulans} SCOP: g.39.1.1 PDB: 2vus_I* 2vuu_I*
Probab=87.55 E-value=0.69 Score=28.54 Aligned_cols=35 Identities=26% Similarity=0.609 Sum_probs=29.6
Q ss_pred CCCcCCCCC-CCCeEEecccceechhhHHHHhhcCC
Q 021294 30 RHCADCGSP-DPKWVSLSTGVFICIKCSGIHRSLGV 64 (314)
Q Consensus 30 ~~C~dC~~~-~p~w~s~~~g~~~C~~C~~~Hr~lg~ 64 (314)
+.|++|+.. -|.|=.-..|-.+|-.|.-..+..|.
T Consensus 2 ~~C~~C~tt~Tp~WR~gp~G~~LCNaCGl~~k~~~~ 37 (43)
T 2vut_I 2 TTCTNCFTQTTPLWRRNPEGQPLCNACGLFLKLHGV 37 (43)
T ss_dssp CCCSSSCCCCCSCCEECTTSCEECHHHHHHHHHHSS
T ss_pred CcCCccCCCCCCccccCCCCCcccHHHHHHHHHhCC
Confidence 579999986 57999999999999999887776554
No 69
>4gat_A Nitrogen regulatory protein AREA; DNA binding protein, transcription factor, zinc binding domain, complex (transcription regulation/DNA); HET: DNA; NMR {Emericella nidulans} SCOP: g.39.1.1 PDB: 5gat_A* 6gat_A* 7gat_A*
Probab=86.30 E-value=0.93 Score=30.73 Aligned_cols=38 Identities=26% Similarity=0.603 Sum_probs=32.1
Q ss_pred CCCCCCcCCCCC-CCCeEEecccceechhhHHHHhhcCC
Q 021294 27 PGNRHCADCGSP-DPKWVSLSTGVFICIKCSGIHRSLGV 64 (314)
Q Consensus 27 ~~N~~C~dC~~~-~p~w~s~~~g~~~C~~C~~~Hr~lg~ 64 (314)
.+...|++|+.. -|.|-.-.-|-.||-.|.-..+..|.
T Consensus 7 ~~~~~C~~C~t~~Tp~WR~gp~G~~LCNaCGl~~~~~~~ 45 (66)
T 4gat_A 7 NGPTTCTNCFTQTTPLWRRNPEGQPLCNACGLFLKLHGV 45 (66)
T ss_dssp SSSCCCTTTCCCCCSSCEEETTTEEECHHHHHHHHHHCS
T ss_pred CCCCCCCCCCCCCCCcCCcCCCCCCccHHHHHHHHHcCC
Confidence 456899999985 58999999999999999887776664
No 70
>3dfx_A Trans-acting T-cell-specific transcription factor GATA-3; activator, DNA-binding, metal-binding, nucleus; HET: DNA; 2.70A {Mus musculus} PDB: 3dfv_D* 2gat_A* 3gat_A* 1gat_A* 1gau_A*
Probab=85.24 E-value=0.64 Score=31.23 Aligned_cols=39 Identities=18% Similarity=0.480 Sum_probs=32.6
Q ss_pred CCCCCCCcCCCCC-CCCeEEecccceechhhHHHHhhcCC
Q 021294 26 QPGNRHCADCGSP-DPKWVSLSTGVFICIKCSGIHRSLGV 64 (314)
Q Consensus 26 ~~~N~~C~dC~~~-~p~w~s~~~g~~~C~~C~~~Hr~lg~ 64 (314)
......|++|+.. -|.|=.-..|-.+|-.|.-..+..|.
T Consensus 4 ~~~~~~C~~C~tt~Tp~WR~gp~G~~LCNACGl~~~~~~~ 43 (63)
T 3dfx_A 4 RRAGTSCANCQTTTTTLWRRNANGDPVCNACGLYYKLHNI 43 (63)
T ss_dssp CCTTCCCTTTCCSCCSSCCCCTTSCCCCHHHHHHHHHHSS
T ss_pred CCCCCcCCCcCCCCCCccCCCCCCCchhhHHHHHHHHcCC
Confidence 4567899999986 57999999999999999887776664
No 71
>4hc9_A Trans-acting T-cell-specific transcription factor; zinc finger, GATA transcription factor, DNA bridging, transc DNA complex; HET: DNA; 1.60A {Homo sapiens} PDB: 4hc7_A* 4hca_A* 3dfx_A* 3dfv_D* 2gat_A* 3gat_A* 1gat_A* 1gau_A* 1gnf_A 1y0j_A 2l6y_A 2l6z_A
Probab=81.11 E-value=1.4 Score=33.40 Aligned_cols=35 Identities=34% Similarity=0.890 Sum_probs=28.9
Q ss_pred CCCCcCCCCC-CCCeEEecccceechhhHHHHhhcC
Q 021294 29 NRHCADCGSP-DPKWVSLSTGVFICIKCSGIHRSLG 63 (314)
Q Consensus 29 N~~C~dC~~~-~p~w~s~~~g~~~C~~C~~~Hr~lg 63 (314)
.+.|++||+. -|.|=.-..|-++|-.|.-.++..|
T Consensus 5 ~~~C~~Cg~~~Tp~WRr~~~g~~lCnaCgl~~Kl~G 40 (115)
T 4hc9_A 5 GRECVNCGATSTPLWRRDGTGHYLCNACGLYHKMNG 40 (115)
T ss_dssp -CCCTTTCCSCCSSCEECTTSCEECHHHHHHHHHHS
T ss_pred CCCCCCCCCccCCcceECCCCCCcCcchhhhhhhcc
Confidence 4789999985 6899999999999999987775444
No 72
>2wxf_A Phosphatidylinositol-4,5-bisphosphate 3-kinase Ca subunit delta isoform; transferase, phosphoprotein, isoform-specific inhibitors; HET: 039; 1.90A {Mus musculus} PDB: 2wxg_A* 2wxh_A* 2wxi_A* 2wxj_A* 2wxk_A* 2wxl_A* 2wxm_A* 2wxn_A* 2wxo_A* 2wxp_A* 2wxq_A* 2wxr_A 2x38_A*
Probab=80.73 E-value=9 Score=39.49 Aligned_cols=88 Identities=16% Similarity=0.266 Sum_probs=59.2
Q ss_pred eeeeEEEEEEEeeecCCCCCCCCCCcEEEEEE--CCeE----eeeeeecCCCCCcccceeEEEec----CCCCcEEEEEE
Q 021294 203 EFVGLIKVNVVKGTNLAVRDVMTSDPYVILAL--GHQT----VKTRVIKSNLNPVWNESLMLSIP----ENIPPLKVLVY 272 (314)
Q Consensus 203 e~~g~L~V~v~~a~~L~~~d~~~~dPyv~v~l--~~~~----~kT~~~~~tlnP~w~e~~~f~v~----~~~~~L~i~v~ 272 (314)
.....+.|+|..+.++...+ ..+-||.+.+ |.+. ..|..+.-..+|.|||.+.|++. +....|.|+||
T Consensus 214 ~~~~~f~i~i~~~~~~~~~~--~~~~~V~~~l~~g~~~l~~~~~T~~~~~~~~~~Wne~l~f~i~i~dLPr~a~L~~ti~ 291 (940)
T 2wxf_A 214 SLEQPFSIELIEGRKVNADE--RMKLVVQAGLFHGNEMLCKTVSSSEVNVCSEPVWKQRLEFDISVCDLPRMARLCFALY 291 (940)
T ss_dssp TCCSEEEEEEEEEECCCC-----CEEEEEEEEEETTEESSCCEECCCEESCSSCEEEEEEEEEEEGGGCCTTCEEEEEEE
T ss_pred hcCCceEEEEEEecccCCCC--CceEEEEEEEEECCEEccCceecccccCCCCcccceEEEcccccccCCcccEEEEEEE
Confidence 34468899999998886532 3567877766 5432 34554444678999999999873 24567999999
Q ss_pred EcCCC--C----------CCceeEEEEEeCcc
Q 021294 273 DKDTF--T----------TDDFMGDAEIDIQP 292 (314)
Q Consensus 273 d~d~~--~----------~dd~iG~~~v~l~~ 292 (314)
+.... + .+..+|.+.++|-+
T Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~lg~~~~~lFd 323 (940)
T 2wxf_A 292 AVVEKAKKARSTKKKSKKADCPIAWANLMLFD 323 (940)
T ss_dssp EEC----------------CEEEEEEEEESBC
T ss_pred EecCCccCccccccccccccceEEEEeeeEEC
Confidence 95321 1 23489999999875
No 73
>1ffk_W Ribosomal protein L37AE; ribosome assembly, RNA-RNA, protein-RNA, protein-protein; 2.40A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 1jj2_Y 1k73_1* 1k8a_1* 1k9m_1* 1kc8_1* 1kd1_1* 1kqs_Y* 1m1k_1* 1m90_1* 1n8r_1* 1nji_1* 1q7y_1* 1q81_1* 1q82_1* 1q86_1* 1qvf_Y 1qvg_Y 1w2b_Y 3cxc_Y*
Probab=79.19 E-value=1.6 Score=30.20 Aligned_cols=41 Identities=27% Similarity=0.656 Sum_probs=33.4
Q ss_pred CcHHHHHHHH-HcCCCCCCCcCCCCCCCCeEEecccceechhhH
Q 021294 14 SGPRARLENL-LRQPGNRHCADCGSPDPKWVSLSTGVFICIKCS 56 (314)
Q Consensus 14 ~~~~~~~~~l-~~~~~N~~C~dC~~~~p~w~s~~~g~~~C~~C~ 56 (314)
...++.++++ ..+...-.|.-||...-.+.. .||+.|..|.
T Consensus 11 ~slRK~vkkie~~q~~ky~C~fCgk~~vkR~a--~GIW~C~~C~ 52 (73)
T 1ffk_W 11 LKIRVRVRDVEIKHKKKYKCPVCGFPKLKRAS--TSIWVCGHCG 52 (73)
T ss_pred hhHHHHHHHHHHhcccCccCCCCCCceeEEEE--eEEEECCCCC
Confidence 3468888888 678999999999987666554 5999999994
No 74
>1u5k_A Hypothetical protein; OBD-fold, Zn-binding, recombination,replication; 2.00A {Deinococcus radiodurans} SCOP: b.40.4.13 g.45.1.2 PDB: 1w3s_A 2v1c_C
Probab=78.61 E-value=0.92 Score=38.93 Aligned_cols=47 Identities=30% Similarity=0.693 Sum_probs=36.7
Q ss_pred CCCCCCCcCCCCCCCCeEEecccceechhhHHHHhhcCCceeEEEEeccCCCCHHHHHHHHHh
Q 021294 26 QPGNRHCADCGSPDPKWVSLSTGVFICIKCSGIHRSLGVHISKVLSVKLDEWTNEQVDALAEM 88 (314)
Q Consensus 26 ~~~N~~C~dC~~~~p~w~s~~~g~~~C~~C~~~Hr~lg~~~s~v~s~~~d~w~~~~v~~~~~~ 88 (314)
.|.-..|+.||.++..|.+...|.++|..|..-+ .++.+++..|+.+
T Consensus 147 ~p~l~~C~~cg~~~~~~fs~~~Gg~~c~~~~~~~----------------~l~~~~l~~l~~l 193 (244)
T 1u5k_A 147 IPQTARCARCGAPDPEHPDPLGGQLLCSKCAALP----------------PYPPAVLDFLRHA 193 (244)
T ss_dssp CCCCSBCTTTCCBSCCEECTTTSSEECTTTCSSC----------------CCCHHHHHHHHHT
T ss_pred CCCcCccccCCCCCCCcEecccCEEECcccCCCC----------------CCCHHHHHHHHHH
Confidence 3555799999999778899999999999985211 4678888887665
No 75
>3hhm_A Phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit alpha isoform; PI3KCA, PI3K, PIK3R1, phosphatidilynositol 3,4,5- triphosphate, wortmannin, H1047R, ATP-binding, disease mutation, kinase; HET: KWT; 2.80A {Homo sapiens} PDB: 3hiz_A 2rd0_A 4a55_A* 2enq_A
Probab=76.76 E-value=12 Score=39.21 Aligned_cols=89 Identities=18% Similarity=0.199 Sum_probs=58.8
Q ss_pred eeeeEEEEEEEeeecCCCCCCCCCCcEEEEEE--CCe----EeeeeeecCCCCCcccceeEEEec----CCCCcEEEEEE
Q 021294 203 EFVGLIKVNVVKGTNLAVRDVMTSDPYVILAL--GHQ----TVKTRVIKSNLNPVWNESLMLSIP----ENIPPLKVLVY 272 (314)
Q Consensus 203 e~~g~L~V~v~~a~~L~~~d~~~~dPyv~v~l--~~~----~~kT~~~~~tlnP~w~e~~~f~v~----~~~~~L~i~v~ 272 (314)
.....+.|+|..+.++........+-||.+.+ |.+ ...|+.+. ..+|.|||.+.|++. +....|-|+||
T Consensus 352 ~~~~~f~v~i~~~~~~n~~~~~~~~~~V~~~l~hG~~~L~~~~~T~~~~-~~~~~Wne~l~f~i~i~dLPr~arL~~tl~ 430 (1091)
T 3hhm_A 352 VINSALRIKILCATYVNVNIRDIDKIYVRTGIYHGGEPLCDNVNTQRVP-CSNPRWNEWLNYDIYIPDLPRAARLCLSIC 430 (1091)
T ss_dssp GCCSEEEEEEEEESCCCCCCSSCCCCCEEEEEESSSCSSCCEECCCCCC-TTSCEEEEEEEEEEEGGGCCTTCEEEEEEC
T ss_pred hCCCCEEEEEEEecCCCCCccccceEEEEEEEEECCEEccCceeccccC-CCCCCCCeeEEecCccccCChhcEEEEEEE
Confidence 34468899999988775432224577888877 433 23444333 457789999999873 24567999999
Q ss_pred EcCCC----CCCceeEEEEEeCcc
Q 021294 273 DKDTF----TTDDFMGDAEIDIQP 292 (314)
Q Consensus 273 d~d~~----~~dd~iG~~~v~l~~ 292 (314)
+.... ..+..||.+.++|-+
T Consensus 431 ~~~~~~~~~~~~~~lg~~n~~lfd 454 (1091)
T 3hhm_A 431 SVKGRKGAKEEHCPLAWGNINLFD 454 (1091)
T ss_dssp CCCCCC-------CCEEEEEESBC
T ss_pred EecCccCcccccceeEEeeeeeEc
Confidence 86542 124579999999875
No 76
>3g9m_A Glucocorticoid receptor; glucocorticoid, DNA-binding, allostery, lever ARM, transcription, hormone; HET: DNA; 1.61A {Rattus norvegicus} SCOP: g.39.1.2 PDB: 3g6p_A* 3g6q_B* 3g6r_B* 3g6u_A* 3g8u_A* 3g8x_A* 3g97_B* 3g99_A* 3g9i_A* 3g9j_A* 3fyl_A* 3g9o_B* 3g9p_B* 3g6t_A* 1r4o_A 1r4r_A 1glu_A* 1gdc_A 2gda_A 1rgd_A ...
Probab=69.95 E-value=2.9 Score=30.10 Aligned_cols=30 Identities=23% Similarity=0.594 Sum_probs=24.4
Q ss_pred CCCCCcCCCCCCCCeEEecccceechhhHHHHh
Q 021294 28 GNRHCADCGSPDPKWVSLSTGVFICIKCSGIHR 60 (314)
Q Consensus 28 ~N~~C~dC~~~~p~w~s~~~g~~~C~~C~~~Hr 60 (314)
|+..|.=||.... ...||++.|..|++.-|
T Consensus 1 g~~~C~VCg~~a~---g~hyGv~sC~~Ck~FFR 30 (90)
T 3g9m_A 1 GSHMCLVCSDEAS---GCHYGVLTCGSCKVFFK 30 (90)
T ss_dssp -CCBCTTTCSBCC---EEETTEEECHHHHHHHH
T ss_pred CCCcCccCCCcCc---ccccCCccchhHhHHhh
Confidence 5788999997653 46899999999999875
No 77
>1e7u_A Phosphatidylinositol 3-kinase catalytic subunit; phosphoinositide 3-kinase gamma, secondary messenger generation, PI3K, PI 3K, wortmannin; HET: KWT; 2.0A {Sus scrofa} SCOP: a.118.1.6 b.7.1.1 d.15.1.5 d.144.1.4 PDB: 1e8x_A* 1e8w_A* 1e7v_A* 1e90_A* 3l54_A* 3s2a_A* 3qaq_A* 3qjz_A* 3qk0_A* 3qar_A* 3apc_A* 3apd_A* 3apf_A* 3dbs_A* 3l13_A* 3r7q_A* 3cst_A* 3csf_A* 3l16_A* 3l17_A* ...
Probab=69.94 E-value=23 Score=36.58 Aligned_cols=91 Identities=13% Similarity=0.088 Sum_probs=54.9
Q ss_pred eeeeEEEEEEEeeecCCCCCCCCCCcEEEEEE--CCeE---eeeeeecCCCCCcccceeEEEec----CCCCcEEEEEEE
Q 021294 203 EFVGLIKVNVVKGTNLAVRDVMTSDPYVILAL--GHQT---VKTRVIKSNLNPVWNESLMLSIP----ENIPPLKVLVYD 273 (314)
Q Consensus 203 e~~g~L~V~v~~a~~L~~~d~~~~dPyv~v~l--~~~~---~kT~~~~~tlnP~w~e~~~f~v~----~~~~~L~i~v~d 273 (314)
+....+.|+|..+...........+-||.+.+ |.+. ..|..+.-..+|.|||.+.|.+. +....|.|+||+
T Consensus 215 ~~~~~f~i~i~~~~~~~~~~~~~~~~~V~~~l~~G~~~l~~~~t~~~~~~~~~~Wne~l~f~i~i~dLPr~a~L~~ti~~ 294 (961)
T 1e7u_A 215 DCDRKFRVKIRGIDIPVLPRTADLTVFVEANIQYGQQVLCQRRTSPKPFTEEVLWNVWLEFSIKIKDLPKGALLNLQIYC 294 (961)
T ss_dssp CCCSEEEEEEEEEECSSCCTTSCEEEEEEEEEEETTEEEEEEECCCEECCSEEEEEEEEEEEEEGGGCCTTCEEEEEEEE
T ss_pred eccCceEEEEeecccccccCCCCceEEEEEEEEECCEEcccceeeccccCCCcccceeEEeccccccCCcccEEEEEEEe
Confidence 34456778887765421111124567777655 5533 23443334567999999999863 245679999997
Q ss_pred cCCCC----------------CCceeEEEEEeCccc
Q 021294 274 KDTFT----------------TDDFMGDAEIDIQPL 293 (314)
Q Consensus 274 ~d~~~----------------~dd~iG~~~v~l~~l 293 (314)
....+ ....+|.+.++|-+.
T Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~lg~~n~~lfd~ 330 (961)
T 1e7u_A 295 GAKPALSGKTSAEMPSPESKGKAQLLYYVNLLLIDH 330 (961)
T ss_dssp EEC--------------------CEEEEEEEESBCT
T ss_pred cccCccccccccccccccccccceeEEEEeeeeecC
Confidence 43221 244799999998753
No 78
>4hn5_A Glucocorticoid receptor; glucocorticoid receptor, steroid receptors, NGRE, repre transcription; HET: DNA; 1.90A {Homo sapiens} PDB: 4hn6_A*
Probab=69.52 E-value=3.3 Score=31.41 Aligned_cols=33 Identities=18% Similarity=0.463 Sum_probs=23.9
Q ss_pred cCCCCCCCcCCCCCCCCeEEecccceechhhHHHHh
Q 021294 25 RQPGNRHCADCGSPDPKWVSLSTGVFICIKCSGIHR 60 (314)
Q Consensus 25 ~~~~N~~C~dC~~~~p~w~s~~~g~~~C~~C~~~Hr 60 (314)
.......|.=||.... ...||++.|..|++.-|
T Consensus 25 ~~~~~~~C~VCgd~a~---G~HyGv~sC~aCk~FFR 57 (117)
T 4hn5_A 25 SNAPPKLCLVCSDEAS---GCHYGVLTCGSCKVFFK 57 (117)
T ss_dssp -----CBCTTTCSBCC---EEETTEEECHHHHHHHH
T ss_pred CCCCCCcCCcCCCcCc---ccccCCcccchhhhhhh
Confidence 3445688999998653 46899999999999865
No 79
>2kae_A GATA-type transcription factor; zinc finger, GATA-type, DNA; NMR {Caenorhabditis elegans}
Probab=69.47 E-value=1.8 Score=29.74 Aligned_cols=37 Identities=19% Similarity=0.511 Sum_probs=29.2
Q ss_pred CCCCCcCCCCC-CCCeEE--ecccceechhhHHHHhhcCCc
Q 021294 28 GNRHCADCGSP-DPKWVS--LSTGVFICIKCSGIHRSLGVH 65 (314)
Q Consensus 28 ~N~~C~dC~~~-~p~w~s--~~~g~~~C~~C~~~Hr~lg~~ 65 (314)
....|++|+.. -|.|=. -.-| .+|-.|.-..+..|.+
T Consensus 7 ~~~~C~nC~tt~Tp~WRrg~~~~g-~LCNACGl~~~~~~~~ 46 (71)
T 2kae_A 7 KSFQCSNCSVTETIRWRNIRSKEG-IQCNACFIYQRKYNKT 46 (71)
T ss_dssp -CCCCSSSCCSCCSSCCCCSSSSC-CCSSHHHHHHHHHHSC
T ss_pred CCCcCCccCCCCCCccccCCCCCC-ccchHHHHHHHHhCCC
Confidence 45899999986 579988 5777 8999998888776653
No 80
>1hcq_A Protein (estrogen receptor); protein-DNA complex, complexed with drug, transcription/DNA complex; HET: DNA; 2.40A {Homo sapiens} SCOP: g.39.1.2 PDB: 1hcp_A 4aa6_A
Probab=68.86 E-value=4.1 Score=28.89 Aligned_cols=32 Identities=25% Similarity=0.577 Sum_probs=26.1
Q ss_pred CCCCCCcCCCCCCCCeEEecccceechhhHHHHhh
Q 021294 27 PGNRHCADCGSPDPKWVSLSTGVFICIKCSGIHRS 61 (314)
Q Consensus 27 ~~N~~C~dC~~~~p~w~s~~~g~~~C~~C~~~Hr~ 61 (314)
.+...|.=||.+.. ...||++.|..|++..|-
T Consensus 2 ~~~~~C~VCg~~a~---g~hyGv~sC~aCk~FFRR 33 (84)
T 1hcq_A 2 KETRYCAVCNDYAS---GYHYGVWSCEGCKAFFKR 33 (84)
T ss_dssp CCCCBCTTTCSBCC---EEETTEEECHHHHHHHHH
T ss_pred CCCCcCcEECCCCC---CeeeCccchHHhhhhhhh
Confidence 35678999997643 679999999999998873
No 81
>1vq8_Z 50S ribosomal protein L37AE; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 1vq4_Z* 1vq6_Z* 1vq5_Z* 1vq7_Z* 1vq9_Z* 1vqk_Z* 1vql_Z* 1vqm_Z* 1vqn_Z* 1vqo_Z* 1vqp_Z* 1yhq_Z* 1yi2_Z* 1yij_Z* 1yit_Z* 1yj9_Z* 1yjn_Z* 1yjw_Z* 2qa4_Z* 1s72_Z* ...
Probab=66.61 E-value=1.8 Score=30.68 Aligned_cols=40 Identities=23% Similarity=0.558 Sum_probs=30.5
Q ss_pred cHHHHHHHH-HcCCCCCCCcCCCCCCCCeEEecccceechhhH
Q 021294 15 GPRARLENL-LRQPGNRHCADCGSPDPKWVSLSTGVFICIKCS 56 (314)
Q Consensus 15 ~~~~~~~~l-~~~~~N~~C~dC~~~~p~w~s~~~g~~~C~~C~ 56 (314)
+.++.+++| ..+...-.|..||+.. --....|++.|..|-
T Consensus 12 ~lRk~vk~ie~~q~~~y~Cp~CG~~~--v~r~atGiW~C~~Cg 52 (83)
T 1vq8_Z 12 VSRRRVAEIESEMNEDHACPNCGEDR--VDRQGTGIWQCSYCD 52 (83)
T ss_dssp HHHHHHHHHHHHHHSCEECSSSCCEE--EEEEETTEEEETTTC
T ss_pred HHHHHHHHHHHhccccCcCCCCCCcc--eeccCCCeEECCCCC
Confidence 467788887 5678899999999843 224457999999994
No 82
>1r4i_A Androgen receptor; AR, steroid receptor, protein-DNA complex, transcription/DNA complex; 3.10A {Rattus norvegicus} SCOP: g.39.1.2
Probab=65.14 E-value=4.2 Score=30.15 Aligned_cols=32 Identities=22% Similarity=0.588 Sum_probs=25.8
Q ss_pred CCCCCCcCCCCCCCCeEEecccceechhhHHHHhh
Q 021294 27 PGNRHCADCGSPDPKWVSLSTGVFICIKCSGIHRS 61 (314)
Q Consensus 27 ~~N~~C~dC~~~~p~w~s~~~g~~~C~~C~~~Hr~ 61 (314)
+.+..|.=||.+. ....||++.|..|++..|-
T Consensus 5 ~~~~~C~VCg~~a---~g~hyGv~sC~aCk~FFRR 36 (105)
T 1r4i_A 5 PPQKTCLICGDEA---SGAHYGALTCGSCKVFFKR 36 (105)
T ss_dssp -CCCBCSSSCSBE---EEEETTEEEEHHHHHHHHH
T ss_pred CCCCCCcEeCCCC---CceEeCCcchhhhhhhhce
Confidence 5678899999643 3679999999999998873
No 83
>2ebl_A COUP transcription factor 1; DNA-binding, metal-binding, nuclear protein, receptor, transcription regulation, zinc, EAR3, erbal3 tfcoup1; NMR {Homo sapiens}
Probab=63.85 E-value=3.8 Score=29.40 Aligned_cols=31 Identities=23% Similarity=0.622 Sum_probs=25.6
Q ss_pred CCCCCCcCCCCCCCCeEEecccceechhhHHHHh
Q 021294 27 PGNRHCADCGSPDPKWVSLSTGVFICIKCSGIHR 60 (314)
Q Consensus 27 ~~N~~C~dC~~~~p~w~s~~~g~~~C~~C~~~Hr 60 (314)
+.+..|.=||.+.. ...||++.|..|++..|
T Consensus 5 ~~~~~C~VCg~~a~---g~hyGv~sC~aCk~FFR 35 (89)
T 2ebl_A 5 SSGIECVVCGDKSS---GKHYGQFTCEGCKSFFK 35 (89)
T ss_dssp CSSCBCTTTCSBCC---SEETTEECCHHHHHHHH
T ss_pred CCCCCCcEeCCCCc---ceEeCchhhHHhhhhhh
Confidence 45678999997654 45899999999999886
No 84
>2han_B Ecdysone receptor; transcription regulation, transcription factor, DNA-binding, nuclear protein, nuclear receptor, zinc finger; 1.95A {Drosophila melanogaster} SCOP: g.39.1.2 PDB: 1r0o_B 1r0n_B
Probab=63.30 E-value=6.3 Score=29.87 Aligned_cols=30 Identities=23% Similarity=0.615 Sum_probs=25.3
Q ss_pred CCCCCcCCCCCCCCeEEecccceechhhHHHHh
Q 021294 28 GNRHCADCGSPDPKWVSLSTGVFICIKCSGIHR 60 (314)
Q Consensus 28 ~N~~C~dC~~~~p~w~s~~~g~~~C~~C~~~Hr 60 (314)
.+..|.=||.... ...||++.|..|++..|
T Consensus 7 ~~~~C~VCg~~a~---g~hyGv~sC~aCk~FFR 36 (119)
T 2han_B 7 QEELCLVCGDRAS---GYHYNALTCEGCKGFFR 36 (119)
T ss_dssp CSCBCTTTCSBCC---EEETTEEECHHHHHHHH
T ss_pred CCCcCeEeCCcCC---cceECchhHHhhHHhhh
Confidence 4678999997643 67999999999999887
No 85
>2a66_A Orphan nuclear receptor NR5A2; protein-DNA complex, zinc finger, DNA- binding domain, transcription factor, FTZ-F1, C-terminal extension; 2.20A {Homo sapiens} PDB: 2ff0_A
Probab=63.27 E-value=3.3 Score=31.16 Aligned_cols=32 Identities=22% Similarity=0.603 Sum_probs=24.0
Q ss_pred CCCCCCCcCCCCCCCCeEEecccceechhhHHHHh
Q 021294 26 QPGNRHCADCGSPDPKWVSLSTGVFICIKCSGIHR 60 (314)
Q Consensus 26 ~~~N~~C~dC~~~~p~w~s~~~g~~~C~~C~~~Hr 60 (314)
.+.+..|.=||.+. ....||++.|..|++..|
T Consensus 6 ~~~~~~C~VCgd~a---~G~HyGv~sC~aCk~FFR 37 (113)
T 2a66_A 6 EDLEELCPVCGDKV---SGYHYGLLTCESCKGFFK 37 (113)
T ss_dssp ----CBCTTTCCBE---EEEETTEEEEHHHHHHHH
T ss_pred CCCCCCCcEeCCCC---cceeeCcccHHHHHHHHh
Confidence 45567899999653 367999999999999887
No 86
>2han_A Protein ultraspiracle; transcription regulation, transcription factor, DNA-binding, nuclear protein, nuclear receptor, zinc finger; 1.95A {Drosophila melanogaster} SCOP: g.39.1.2
Probab=62.79 E-value=5.9 Score=28.64 Aligned_cols=30 Identities=27% Similarity=0.728 Sum_probs=24.7
Q ss_pred CCCCCcCCCCCCCCeEEecccceechhhHHHHh
Q 021294 28 GNRHCADCGSPDPKWVSLSTGVFICIKCSGIHR 60 (314)
Q Consensus 28 ~N~~C~dC~~~~p~w~s~~~g~~~C~~C~~~Hr 60 (314)
....|.=||.+.. ...||++.|..|++..|
T Consensus 9 ~~~~C~VCgd~a~---g~hyGv~sC~aCk~FFR 38 (93)
T 2han_A 9 SKHLCSICGDRAS---GKHYGVYSCEGCKGFFK 38 (93)
T ss_dssp -CCBCTTTCSBCC---EEETTEEECHHHHHHHH
T ss_pred CCCCCcEeCCCCc---CeecCcchhHHHHHHHH
Confidence 4578999997653 56999999999999876
No 87
>2nll_B Protein (thyroid hormone receptor); complex (transcription regulation/DNA), DNA-binding, nuclear protein, zinc- finger, multigene family; HET: DNA 5IU; 1.90A {Homo sapiens} SCOP: g.39.1.2 PDB: 3m9e_A*
Probab=62.65 E-value=5.1 Score=29.60 Aligned_cols=29 Identities=24% Similarity=0.621 Sum_probs=23.6
Q ss_pred CCCcCCCCCCCCeEEecccceechhhHHHHhh
Q 021294 30 RHCADCGSPDPKWVSLSTGVFICIKCSGIHRS 61 (314)
Q Consensus 30 ~~C~dC~~~~p~w~s~~~g~~~C~~C~~~Hr~ 61 (314)
..|.=||.+.. ...||++.|..|++..|-
T Consensus 2 ~~C~VCgd~a~---g~hyGv~sC~aCk~FFRR 30 (103)
T 2nll_B 2 ELCVVCGDKAT---GYHYRCITCEGCKGFFRR 30 (103)
T ss_dssp CBCTTTCSBCC---SEETTEECCHHHHHHHHH
T ss_pred CCCeEeCCcCc---CeecCcccHHHhhhhhee
Confidence 57889997543 468999999999998873
No 88
>1d4u_A Nucleotide excision repair protein XPA (XPA-MBD); DNA repair, loop-rich domain, relaxation, DNA binding protein; NMR {Homo sapiens} SCOP: a.6.1.2 g.39.1.5 PDB: 1xpa_A
Probab=61.76 E-value=1.2 Score=33.55 Aligned_cols=31 Identities=16% Similarity=0.367 Sum_probs=23.9
Q ss_pred CCCCCcCCCCCCC-CeEEecccceechhhHHH
Q 021294 28 GNRHCADCGSPDP-KWVSLSTGVFICIKCSGI 58 (314)
Q Consensus 28 ~N~~C~dC~~~~p-~w~s~~~g~~~C~~C~~~ 58 (314)
+...|.+||...- .|..-+|++-||..|...
T Consensus 4 ~~~~C~eC~~~~~d~~l~~~F~~~VC~~Cr~~ 35 (111)
T 1d4u_A 4 DYVICEECGKEFMDSYLMDHFDLPTCDDCRDA 35 (111)
T ss_dssp CCEECTTTCCEESCSSSTTTTSCCCCTTTCSS
T ss_pred CCCccccCCChhhHHHHHHhCCeeechhhccc
Confidence 5567999998643 344569999999999764
No 89
>1cit_A NGFI-B, protein (orphan nuclear receptor NGFI-B); early immediate response gene product, transcription factor, monomeric protein-DNA complex; HET: DNA; 2.70A {Rattus norvegicus} SCOP: g.39.1.2
Probab=60.39 E-value=7.8 Score=27.73 Aligned_cols=28 Identities=32% Similarity=0.730 Sum_probs=22.8
Q ss_pred CCcCCCCCCCCeEEecccceechhhHHHHhh
Q 021294 31 HCADCGSPDPKWVSLSTGVFICIKCSGIHRS 61 (314)
Q Consensus 31 ~C~dC~~~~p~w~s~~~g~~~C~~C~~~Hr~ 61 (314)
.|.=||.+.. ...||++.|..|++..|-
T Consensus 2 ~C~VCg~~a~---g~hyGv~sC~aCk~FFRR 29 (89)
T 1cit_A 2 RCAVCGDNAS---CQHYGVRTCEGCKGFFKR 29 (89)
T ss_dssp CCSSSCCCCC---EEETTEEECHHHHHHHHH
T ss_pred CCeEeCCCCc---ceEeCccchhhhhhhcee
Confidence 5888987543 579999999999998863
No 90
>1dsz_A RAR-alpha, retinoic acid receptor alpha; RAR, nuclear receptor, protein-DNA, transcription/DNA complex; HET: DNA; 1.70A {Homo sapiens} SCOP: g.39.1.2 PDB: 1hra_A
Probab=60.31 E-value=6.2 Score=28.06 Aligned_cols=28 Identities=29% Similarity=0.660 Sum_probs=22.8
Q ss_pred CCCcCCCCCCCCeEEecccceechhhHHHHh
Q 021294 30 RHCADCGSPDPKWVSLSTGVFICIKCSGIHR 60 (314)
Q Consensus 30 ~~C~dC~~~~p~w~s~~~g~~~C~~C~~~Hr 60 (314)
..|.=||.+.. ...||++.|..|++..|
T Consensus 5 ~~C~VCg~~a~---g~hyGv~sC~aCk~FFR 32 (86)
T 1dsz_A 5 KPCFVCQDKSS---GYHYGVSACEGCKGFFR 32 (86)
T ss_dssp -CCTTTCSCCC---SEETTEECCHHHHHHHH
T ss_pred CCCcEECCCcc---ceeeCchhHHHHHHHHH
Confidence 56999997654 45899999999999887
No 91
>1a6y_A Orphan nuclear receptor NR1D1; orphan receptor, DNA-binding, reverb, REV- ERB, transcription regulation, transcription/DNA complex; HET: DNA 5IU; 2.30A {Homo sapiens} SCOP: g.39.1.2 PDB: 1ga5_A* 1hlz_A
Probab=59.13 E-value=5.9 Score=28.70 Aligned_cols=31 Identities=29% Similarity=0.610 Sum_probs=24.0
Q ss_pred CCCCCCcCCCCCCCCeEEecccceechhhHHHHh
Q 021294 27 PGNRHCADCGSPDPKWVSLSTGVFICIKCSGIHR 60 (314)
Q Consensus 27 ~~N~~C~dC~~~~p~w~s~~~g~~~C~~C~~~Hr 60 (314)
.....|.=||.+.. ...||++.|..|++..|
T Consensus 5 ~~~~~C~VCg~~a~---g~hyGv~sC~aCk~FFR 35 (94)
T 1a6y_A 5 GMVLLCKVCGDVAS---GFHYGVLACEGCKGFFR 35 (94)
T ss_dssp ---CBCTTTSSBCC---EEETTEEECHHHHHHHH
T ss_pred CCCCcCcEeCCCCc---ceEeCccchhhhhhehh
Confidence 34567999997653 67899999999999887
No 92
>4hc9_A Trans-acting T-cell-specific transcription factor; zinc finger, GATA transcription factor, DNA bridging, transc DNA complex; HET: DNA; 1.60A {Homo sapiens} PDB: 4hc7_A* 4hca_A* 3dfx_A* 3dfv_D* 2gat_A* 3gat_A* 1gat_A* 1gau_A* 1gnf_A 1y0j_A 2l6y_A 2l6z_A
Probab=56.03 E-value=14 Score=27.71 Aligned_cols=39 Identities=18% Similarity=0.477 Sum_probs=32.8
Q ss_pred CCCCCCcCCCCC-CCCeEEecccceechhhHHHHhhcCCc
Q 021294 27 PGNRHCADCGSP-DPKWVSLSTGVFICIKCSGIHRSLGVH 65 (314)
Q Consensus 27 ~~N~~C~dC~~~-~p~w~s~~~g~~~C~~C~~~Hr~lg~~ 65 (314)
.....|++|+.. -|.|=.-..|-.||-.|.-..+..|.+
T Consensus 57 ~~~~~C~~C~t~~tp~WRr~~~g~~lCNaCgl~~~~~~~~ 96 (115)
T 4hc9_A 57 RAGTSCANCQTTTTTLWRRNANGDPVCNACGLYYKLHNIN 96 (115)
T ss_dssp CTTCCCTTTCCSCCSSCEECTTSCEECHHHHHHHHHHSSC
T ss_pred cccccCCCcCCCCcceeEECCCCCCcchHHHHHHHHhCCC
Confidence 457899999985 589999999999999998887766654
No 93
>1tjl_A DNAK suppressor protein; DKSA, transcription factor, RNA polymerase, stringent response, PPGPP, riken structural genomics/proteomics initiative; 2.00A {Escherichia coli} SCOP: a.2.14.1 g.39.1.13 PDB: 3h3p_S
Probab=55.85 E-value=11 Score=29.88 Aligned_cols=35 Identities=17% Similarity=0.388 Sum_probs=23.6
Q ss_pred CCCCCCCcCCCCCCCC-eEEecccceechhhHHHHh
Q 021294 26 QPGNRHCADCGSPDPK-WVSLSTGVFICIKCSGIHR 60 (314)
Q Consensus 26 ~~~N~~C~dC~~~~p~-w~s~~~g~~~C~~C~~~Hr 60 (314)
...-..|.+||.+=|. =.-.--++-.|+.|...|-
T Consensus 108 ~g~yg~C~~Cg~~Ip~~Rl~a~P~a~~Ci~Cq~~~E 143 (151)
T 1tjl_A 108 DEDFGYCESCGVEIGIRRLEARPTADLCIDCKTLAE 143 (151)
T ss_dssp TTCCSBCSSSSCBCCHHHHHHCTTCCSCHHHHHHHH
T ss_pred CCCCceeCCCCCcchHHHHhcCCCcchhHHHHHHHH
Confidence 3566899999987441 1112236788999998763
No 94
>1kb2_A Vitamin D3 receptor; VDR, nuclear receptor, protein-DNA complex, transcription/DNA complex; 2.70A {Homo sapiens} SCOP: g.39.1.2 PDB: 1kb4_A 1kb6_A 1ynw_A
Probab=55.30 E-value=7.5 Score=29.04 Aligned_cols=29 Identities=28% Similarity=0.704 Sum_probs=23.7
Q ss_pred CCCCcCCCCCCCCeEEecccceechhhHHHHh
Q 021294 29 NRHCADCGSPDPKWVSLSTGVFICIKCSGIHR 60 (314)
Q Consensus 29 N~~C~dC~~~~p~w~s~~~g~~~C~~C~~~Hr 60 (314)
...|.=||.... ...||++.|..|++..|
T Consensus 6 ~~~C~VCg~~a~---g~hyGv~sC~aCk~FFR 34 (110)
T 1kb2_A 6 PRICGVCGDRAT---GFHFNAMTCEGCKGFFR 34 (110)
T ss_dssp -CBCTTTCSBCC---SEETTEECCHHHHHHHH
T ss_pred CCCCcEeCCCCC---ceEeCchhHhhhhhhhe
Confidence 467999997653 45899999999999887
No 95
>3cc2_Z 50S ribosomal protein L37AE, 50S ribosomal protein L32E; genomic sequnece for R-proteins, ribonucleoprotein, ribosoma protein, RNA-binding; HET: 1MA OMU OMG UR3 PSU; 2.40A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 3cc4_Z* 3cc7_Z* 3cce_Z* 3ccj_Z* 3ccl_Z* 3ccm_Z* 3ccq_Z* 3ccr_Z* 3ccs_Z* 3ccu_Z* 3ccv_Z* 3cd6_Z* 3cma_Z* 3cme_Z* 3i55_Z* 3i56_Z* 3cpw_Y* 4adx_Z
Probab=53.20 E-value=2.8 Score=31.60 Aligned_cols=40 Identities=23% Similarity=0.593 Sum_probs=30.6
Q ss_pred cHHHHHHHH-HcCCCCCCCcCCCCCCCCeEEecccceechhhH
Q 021294 15 GPRARLENL-LRQPGNRHCADCGSPDPKWVSLSTGVFICIKCS 56 (314)
Q Consensus 15 ~~~~~~~~l-~~~~~N~~C~dC~~~~p~w~s~~~g~~~C~~C~ 56 (314)
+.++.++++ ..+...-.|.-||...-. -...||+-|..|-
T Consensus 45 slRK~vkkiE~~q~akytCPfCGk~~vK--R~avGIW~C~~Cg 85 (116)
T 3cc2_Z 45 VSRRRVAEIESEMNEDHACPNCGEDRVD--RQGTGIWQCSYCD 85 (116)
T ss_dssp HHHHHHHHHHHHHHSCEECSSSCCEEEE--EEETTEEEETTTC
T ss_pred HHHHHHHHHHHHhccCCcCCCCCCceeE--ecCceeEECCCCC
Confidence 357788887 678889999999974433 3446999999994
No 96
>1ynw_B Retinoic acid receptor RXR-alpha, retinoid X receptor; VDR, nuclear receptor, protein-DNA complex, transcripti complex; 3.00A {Homo sapiens} SCOP: g.39.1.2
Probab=53.01 E-value=6.6 Score=28.74 Aligned_cols=30 Identities=30% Similarity=0.741 Sum_probs=23.2
Q ss_pred CCCCcCCCCCCCCeEEecccceechhhHHHHhh
Q 021294 29 NRHCADCGSPDPKWVSLSTGVFICIKCSGIHRS 61 (314)
Q Consensus 29 N~~C~dC~~~~p~w~s~~~g~~~C~~C~~~Hr~ 61 (314)
...|.=||.+.. ...||++.|..|++..|-
T Consensus 3 ~~~C~VCg~~a~---g~hyGv~sC~aCk~FFRR 32 (99)
T 1ynw_B 3 KHICAICGDRSS---GKHYGVYSCEGCKGFFKR 32 (99)
T ss_dssp --CBTTTBSCCC---BCCTTSCBCSHHHHHHHH
T ss_pred CCCCceeCCCCc---ceeeCccchHHHHHHHHh
Confidence 357999997653 468999999999998873
No 97
>1dl6_A Transcription factor II B (TFIIB); zinc ribbon, gene regulation; NMR {Homo sapiens} SCOP: g.41.3.1 PDB: 1rly_A 1ro4_A
Probab=53.01 E-value=6.4 Score=25.72 Aligned_cols=26 Identities=19% Similarity=0.401 Sum_probs=18.8
Q ss_pred CCCcCCCCCCCCeEEecccceechhhH
Q 021294 30 RHCADCGSPDPKWVSLSTGVFICIKCS 56 (314)
Q Consensus 30 ~~C~dC~~~~p~w~s~~~g~~~C~~C~ 56 (314)
..|.+|+...- -....-|..+|..|.
T Consensus 12 ~~Cp~C~~~~l-v~D~~~ge~vC~~CG 37 (58)
T 1dl6_A 12 VTCPNHPDAIL-VEDYRAGDMICPECG 37 (58)
T ss_dssp CSBTTBSSSCC-EECSSSCCEECTTTC
T ss_pred ccCcCCCCCce-eEeCCCCeEEeCCCC
Confidence 47999998652 223356999999994
No 98
>1dsz_B RXR-alpha, retinoic acid receptor RXR-alpha; RAR, nuclear receptor, protein-DNA, transcription/DNA complex; HET: DNA; 1.70A {Homo sapiens} SCOP: g.39.1.2 PDB: 1by4_A* 1rxr_A 1r0n_A 1r0o_A 2nll_A*
Probab=52.86 E-value=5.5 Score=28.30 Aligned_cols=31 Identities=29% Similarity=0.706 Sum_probs=24.7
Q ss_pred CCCCCcCCCCCCCCeEEecccceechhhHHHHhh
Q 021294 28 GNRHCADCGSPDPKWVSLSTGVFICIKCSGIHRS 61 (314)
Q Consensus 28 ~N~~C~dC~~~~p~w~s~~~g~~~C~~C~~~Hr~ 61 (314)
.+..|.=||.+.. ...||++.|..|++..|-
T Consensus 4 ~~~~C~VCg~~a~---g~hyGv~sC~aCk~FFRR 34 (85)
T 1dsz_B 4 TKHICAICGDRSS---GKHYGVYSCEGCKGFFKR 34 (85)
T ss_dssp CCEECTTTCCEES---SEETTEECCHHHHHHHHH
T ss_pred CCCCCCEeCCCCC---ceeeCccchHHHHHHHHH
Confidence 4567999997543 458999999999998873
No 99
>1lo1_A Steroid hormone receptor ERR2; estrogen related receptor 2, DNA binding domain, HERR2, hormone nuclear receptor; NMR {Homo sapiens} SCOP: g.39.1.2
Probab=52.46 E-value=5.1 Score=29.30 Aligned_cols=29 Identities=28% Similarity=0.637 Sum_probs=24.0
Q ss_pred CCCCcCCCCCCCCeEEecccceechhhHHHHh
Q 021294 29 NRHCADCGSPDPKWVSLSTGVFICIKCSGIHR 60 (314)
Q Consensus 29 N~~C~dC~~~~p~w~s~~~g~~~C~~C~~~Hr 60 (314)
...|.=||.+.. ...||++.|..|++..|
T Consensus 4 ~~~C~VCg~~a~---g~hyGv~sC~aCk~FFR 32 (98)
T 1lo1_A 4 KRLCLVCGDIAS---GYHYGVASCEACKAFFK 32 (98)
T ss_dssp CCEETTTTEECS---EESSSSEECHHHHHHHH
T ss_pred CCCCcEeCCCCc---CeeeCccchhhhhhhhe
Confidence 467889997542 56999999999999887
No 100
>2kgo_A Uncharacterized protein YBII; Zn finger, partially disordered, structural proteomics, META binding, zinc-finger, structural genomics; NMR {Escherichia coli}
Probab=50.01 E-value=7 Score=29.11 Aligned_cols=32 Identities=31% Similarity=0.721 Sum_probs=22.0
Q ss_pred CCCCcCCCCCCC-CeEEecccceechhhHHHHh
Q 021294 29 NRHCADCGSPDP-KWVSLSTGVFICIKCSGIHR 60 (314)
Q Consensus 29 N~~C~dC~~~~p-~w~s~~~g~~~C~~C~~~Hr 60 (314)
-..|.+||.+=| .-.-.--++..|+.|...+-
T Consensus 56 yG~C~~CGe~Ip~~RL~A~P~a~~Cv~Cq~~~E 88 (108)
T 2kgo_A 56 LDECEECGAPIPQARREAIPGVRLCIHCQQEKD 88 (108)
T ss_dssp CSBCTTTCCBCCHHHHHHSTTCCSCHHHHHHHH
T ss_pred CceecccCCcccHHHHhcCCCccccHHHHHHHH
Confidence 579999998744 11122336788999998764
No 101
>3cbb_A HNF-4-alpha, hepatocyte nuclear factor 4-alpha, DNA binding domain, nuclear; zinc finger; 2.00A {Homo sapiens}
Probab=48.18 E-value=11 Score=26.17 Aligned_cols=27 Identities=33% Similarity=0.672 Sum_probs=22.0
Q ss_pred CCcCCCCCCCCeEEecccceechhhHHHHh
Q 021294 31 HCADCGSPDPKWVSLSTGVFICIKCSGIHR 60 (314)
Q Consensus 31 ~C~dC~~~~p~w~s~~~g~~~C~~C~~~Hr 60 (314)
.|.=||.+.. ...||++.|..|++..|
T Consensus 2 ~C~VCg~~a~---g~hyGv~sC~aCk~FFR 28 (78)
T 3cbb_A 2 LCAICGDRAT---GKHYGASSCDGCKGFFR 28 (78)
T ss_dssp BCTTTSSBCC---SEETTEECCHHHHHHHH
T ss_pred CCeEeCCCCC---ceEeCCcchhhhceeee
Confidence 4778886543 45899999999999887
No 102
>3dzy_D Peroxisome proliferator-activated receptor gamma; DNA-binding, HOST-virus interaction, metal-binding, nucleus, receptor, transcription, transcription regulation, zinc-FIN activator; HET: DNA REA BRL; 3.10A {Homo sapiens} PDB: 3dzu_D* 3e00_D* 2env_A
Probab=47.02 E-value=11 Score=34.93 Aligned_cols=31 Identities=29% Similarity=0.618 Sum_probs=24.7
Q ss_pred CCCCCCcCCCCCCCCeEEecccceechhhHHHHh
Q 021294 27 PGNRHCADCGSPDPKWVSLSTGVFICIKCSGIHR 60 (314)
Q Consensus 27 ~~N~~C~dC~~~~p~w~s~~~g~~~C~~C~~~Hr 60 (314)
..+..|.=||..... ..||+..|..|++.-|
T Consensus 48 ~~~~~C~vC~~~~~g---~hygv~~C~~C~~FFr 78 (419)
T 3dzy_D 48 LMAIECRVCGDKASG---FHYGVHACEGCKGFFR 78 (419)
T ss_dssp --CCCCSSSCSCCCS---BCSSSBCCHHHHHHHH
T ss_pred CCCCcCeECCCcCCC---CccCcccchhhhHHHc
Confidence 456789999987654 4899999999999865
No 103
>2y3a_A Phosphatidylinositol-4,5-bisphosphate 3-kinase Ca subunit beta isoform; transferase, phosphoinositide 3-kinase, RTK; HET: GD9; 3.30A {Mus musculus}
Probab=43.57 E-value=41 Score=35.22 Aligned_cols=88 Identities=20% Similarity=0.230 Sum_probs=55.7
Q ss_pred eeeeEEEEEEEeeecCCCCCCCCCCcEEEEEE--CCeE----eeeeeecCCCCCcccceeEEEecC----CCCcEEEEEE
Q 021294 203 EFVGLIKVNVVKGTNLAVRDVMTSDPYVILAL--GHQT----VKTRVIKSNLNPVWNESLMLSIPE----NIPPLKVLVY 272 (314)
Q Consensus 203 e~~g~L~V~v~~a~~L~~~d~~~~dPyv~v~l--~~~~----~kT~~~~~tlnP~w~e~~~f~v~~----~~~~L~i~v~ 272 (314)
.....+.|+|..+.++...+ ..+-||.+.+ |.+. ..|..+.-..+|.|||.+.|++.- ....|.|+||
T Consensus 350 ~~~~~f~i~i~~~~~~~~~~--~~~~~V~~~l~~g~~~L~~~~~T~~~~~~~~~~Wnewl~f~i~~~dLPr~a~L~~ti~ 427 (1092)
T 2y3a_A 350 DNNNPFQITLVKGNKLNTEE--TVKVHVRAGLFHGTELLCKTVVSSEISGKNDHIWNEQLEFDINICDLPRMARLCFAVY 427 (1092)
T ss_dssp CCCSEEEEEECCCCCCCCCS--SCCCCCBCCEEETTEESSCCCBCCCCCSSSCCCCCEEEEEEEESSSCCTTCEEEEECC
T ss_pred hcCCCEEEEEEEeccCCCCC--CceEEEEEEEEECCEEccCceecccccCCCCCccceeEEeCCccccCChhcEEEEEEE
Confidence 44468889999988876542 3456665444 5543 345444446789999999998742 4567999999
Q ss_pred EcCCC----------------------CCCceeEEEEEeCcc
Q 021294 273 DKDTF----------------------TTDDFMGDAEIDIQP 292 (314)
Q Consensus 273 d~d~~----------------------~~dd~iG~~~v~l~~ 292 (314)
+.... ..+..+|.+.++|-+
T Consensus 428 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~lFd 469 (1092)
T 2y3a_A 428 AVLDKVKTKKSTKTINPSKYQTIRKAGKVHYPVAWVNTMVFD 469 (1092)
T ss_dssp CC------------------------------CCEEEEESBC
T ss_pred EecCccccccccccccccccccccccccccceeEEEeeeeEC
Confidence 85210 112378999999875
No 104
>2yrb_A Protein fantom; beta sandwich, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.7.1.1
Probab=36.79 E-value=89 Score=24.66 Aligned_cols=90 Identities=12% Similarity=0.183 Sum_probs=57.4
Q ss_pred eEEEEEEEeeecCCCC-C-CCCCCcEEEEEE---CCeEeeeeeecCCCCCcccceeEEEecC--------CCCcEEEEEE
Q 021294 206 GLIKVNVVKGTNLAVR-D-VMTSDPYVILAL---GHQTVKTRVIKSNLNPVWNESLMLSIPE--------NIPPLKVLVY 272 (314)
Q Consensus 206 g~L~V~v~~a~~L~~~-d-~~~~dPyv~v~l---~~~~~kT~~~~~tlnP~w~e~~~f~v~~--------~~~~L~i~v~ 272 (314)
+.+.|.|.++.--+.. . ....+|..-+.+ +-....|.++. ..+|.+|-+-.+.+.. ....|.|++.
T Consensus 18 nlfEihi~~~~~~~~~l~~~~d~~p~tF~t~dF~dfEtq~Tpv~~-G~~p~y~fts~Y~V~~d~~fl~yL~~~~l~lELh 96 (156)
T 2yrb_A 18 NLFEIHINKVTFSSEVLQASGDKEPVTFCTYAFYDFELQTTPVVR-GLHPEYNFTSQYLVHVNDLFLQYIQKNTITLEVH 96 (156)
T ss_dssp EEEEEEEEEECCCHHHHHHHCSSCCEEEEEECSTTCCCEECCCEE-SSSCCCCEEEEEEECCSHHHHHHHHHCCEEEEEE
T ss_pred cEEEEEEeEEEEcHHHHhhccccCCcEEEEEEEeceEeeeccccc-CCCCCcceEEEEEEEeCHHHHHHHhcCCEEEEEE
Confidence 4566666665421110 0 012356544444 44566677665 7899999988887742 2357889998
Q ss_pred EcCCCCCCceeEEEEEeCccccccc
Q 021294 273 DKDTFTTDDFMGDAEIDIQPLVTAA 297 (314)
Q Consensus 273 d~d~~~~dd~iG~~~v~l~~l~~~~ 297 (314)
.... +....+|.+.|+|.+++...
T Consensus 97 qa~g-~~~~tla~~~I~l~~lLe~~ 120 (156)
T 2yrb_A 97 QAYS-TEYETIAACQLKFHEILEKS 120 (156)
T ss_dssp EECS-SCEEEEEEEEECCSHHHHCC
T ss_pred EeeC-CCceEEEEEEEEhHHhhCcC
Confidence 8543 34468999999999998553
No 105
>1ovx_A ATP-dependent CLP protease ATP-binding subunit CL; treble CLEF zinc finger, homodimer, metal binding protein; NMR {Escherichia coli} SCOP: g.39.1.11
Probab=35.43 E-value=36 Score=22.90 Aligned_cols=28 Identities=29% Similarity=0.711 Sum_probs=20.1
Q ss_pred CCCcCCCCCCC---CeEEecccceechhhHHH
Q 021294 30 RHCADCGSPDP---KWVSLSTGVFICIKCSGI 58 (314)
Q Consensus 30 ~~C~dC~~~~p---~w~s~~~g~~~C~~C~~~ 58 (314)
..|-=||.... .-+.- -|++||.+|..+
T Consensus 19 ~~CSFCGK~e~eV~~LIaG-pgvyICdeCI~~ 49 (67)
T 1ovx_A 19 LYCSFCGKSQHEVRKLIAG-PSVYICDECVDL 49 (67)
T ss_dssp CCCTTTCCCTTTSSSEEEC-SSCEEEHHHHHH
T ss_pred cEecCCCCCHHHHcccCCC-CCCChhHHHHHH
Confidence 57999997653 33333 489999999864
No 106
>3dzy_A Retinoic acid receptor RXR-alpha; DNA-binding, HOST-virus interaction, metal-binding, nucleus, receptor, transcription, transcription regulation, zinc-FIN activator; HET: DNA REA BRL; 3.10A {Homo sapiens} PDB: 3dzu_A* 3e00_A*
Probab=33.48 E-value=13 Score=35.03 Aligned_cols=30 Identities=30% Similarity=0.715 Sum_probs=24.0
Q ss_pred CCCCCcCCCCCCCCeEEecccceechhhHHHHh
Q 021294 28 GNRHCADCGSPDPKWVSLSTGVFICIKCSGIHR 60 (314)
Q Consensus 28 ~N~~C~dC~~~~p~w~s~~~g~~~C~~C~~~Hr 60 (314)
.+..|.=||..... ..||+..|..|++..|
T Consensus 136 ~~~~C~VCg~~a~g---~hygv~sC~~Ck~FFr 165 (467)
T 3dzy_A 136 TKHICAICGDRSSG---KHYGVYSCEGCKGFFK 165 (467)
T ss_dssp -CEECTTTSSEECS---EETTEECCHHHHHHHH
T ss_pred CCCcceeCCCCCCC---CcCCCcchhhhhHhcc
Confidence 35679999986543 4899999999999876
No 107
>3k1f_M Transcription initiation factor IIB; RNA polymerase II, TFIIB, transcription factor, DNA-binding, DNA-directed RNA polymerase; 4.30A {Saccharomyces cerevisiae}
Probab=33.48 E-value=25 Score=28.50 Aligned_cols=29 Identities=31% Similarity=0.690 Sum_probs=21.7
Q ss_pred CCCcCCCCCCCCeE-EecccceechhhHHH
Q 021294 30 RHCADCGSPDPKWV-SLSTGVFICIKCSGI 58 (314)
Q Consensus 30 ~~C~dC~~~~p~w~-s~~~g~~~C~~C~~~ 58 (314)
..|-+||...+.-+ ...-|-.||..|.-|
T Consensus 22 ~~CPECGs~~t~IV~D~erGE~VCsdCGLV 51 (197)
T 3k1f_M 22 LTCPECKVYPPKIVERFSEGDVVCALCGLV 51 (197)
T ss_dssp CCCTTTCCSSCCEEEEGGGTEEEETTTCBB
T ss_pred eECcCCCCcCCeEEEeCCCCEEEEcCCCCC
Confidence 37999998545444 357899999999654
No 108
>1pft_A TFIIB, PFTFIIBN; N-terminal domain, transcription initiation factor; NMR {Pyrococcus furiosus} SCOP: g.41.3.1
Probab=33.30 E-value=20 Score=22.24 Aligned_cols=26 Identities=27% Similarity=0.777 Sum_probs=17.9
Q ss_pred CCCcCCCCCCCCeEEecccceechhhH
Q 021294 30 RHCADCGSPDPKWVSLSTGVFICIKCS 56 (314)
Q Consensus 30 ~~C~dC~~~~p~w~s~~~g~~~C~~C~ 56 (314)
..|-+|++..-.+ .-.-|-++|..|.
T Consensus 6 ~~CP~C~~~~l~~-d~~~gelvC~~CG 31 (50)
T 1pft_A 6 KVCPACESAELIY-DPERGEIVCAKCG 31 (50)
T ss_dssp CSCTTTSCCCEEE-ETTTTEEEESSSC
T ss_pred EeCcCCCCcceEE-cCCCCeEECcccC
Confidence 4799998843222 2355889999994
No 109
>2ds5_A CLPX, ATP-dependent CLP protease ATP-binding subunit CLPX; treble cleft zinc finger, metal binding protein, protein binding; HET: PG4; 1.50A {Escherichia coli} SCOP: g.39.1.11 PDB: 2ds6_A 2ds8_A 2ds7_A
Probab=31.92 E-value=53 Score=20.72 Aligned_cols=30 Identities=27% Similarity=0.671 Sum_probs=20.7
Q ss_pred CCCCCcCCCCCCC---CeEEecccceechhhHHH
Q 021294 28 GNRHCADCGSPDP---KWVSLSTGVFICIKCSGI 58 (314)
Q Consensus 28 ~N~~C~dC~~~~p---~w~s~~~g~~~C~~C~~~ 58 (314)
....|-=||.... .-+. .-|++||.+|...
T Consensus 10 ~~~~CSFCGk~~~ev~~LIa-Gpgv~IC~eCi~~ 42 (51)
T 2ds5_A 10 KLLYCSFCGKSQHEVRKLIA-GPSVYICDECVDL 42 (51)
T ss_dssp CCCBCTTTCCBTTTSSCEEE-CSSCEEEHHHHHH
T ss_pred CCcEecCCCCCHHHhcccCC-CCCCEehHHHHHH
Confidence 3468999997643 2332 3489999999764
No 110
>3j21_g 50S ribosomal protein L40E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=30.75 E-value=11 Score=23.94 Aligned_cols=23 Identities=30% Similarity=0.647 Sum_probs=19.3
Q ss_pred CCCCCcCCCCCCCCeEEecccceechhhH
Q 021294 28 GNRHCADCGSPDPKWVSLSTGVFICIKCS 56 (314)
Q Consensus 28 ~N~~C~dC~~~~p~w~s~~~g~~~C~~C~ 56 (314)
...+|..|++. +..|+.-|..|.
T Consensus 13 ~k~iCpkC~a~------~~~gaw~CrKCG 35 (51)
T 3j21_g 13 KKYVCLRCGAT------NPWGAKKCRKCG 35 (51)
T ss_dssp SEEECTTTCCE------ECTTCSSCSSSS
T ss_pred CCccCCCCCCc------CCCCceecCCCC
Confidence 56789999998 458999999984
No 111
>3izc_m 60S ribosomal protein RPL43 (L37AE); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins; NMR {Saccharomyces cerevisiae} PDB: 3izs_m 3o58_g 3o5h_g 3u5e_p 3u5i_p 4b6a_p 1s1i_9
Probab=30.72 E-value=32 Score=24.68 Aligned_cols=38 Identities=26% Similarity=0.578 Sum_probs=28.5
Q ss_pred HHHHHHHHH-cCCCCCCCcCCCCCCCCeEEecccceechhh
Q 021294 16 PRARLENLL-RQPGNRHCADCGSPDPKWVSLSTGVFICIKC 55 (314)
Q Consensus 16 ~~~~~~~l~-~~~~N~~C~dC~~~~p~w~s~~~g~~~C~~C 55 (314)
.++.++++- .+...-.|.-||...-... ..||+-|..|
T Consensus 22 lRK~vkkie~~q~~ky~CpfCgk~~vkR~--a~GIW~C~~C 60 (92)
T 3izc_m 22 LRRQVKKLEIQQHARYDCSFCGKKTVKRG--AAGIWTCSCC 60 (92)
T ss_dssp HHHHHHHHHHHHHSCCCCSSSCSSCCEEE--ETTEEECTTT
T ss_pred HHHHHHHHHHHHhcCCcCCCCCCceeeec--ccceEEcCCC
Confidence 456666654 4567889999998765554 4799999999
No 112
>3j21_i 50S ribosomal protein L37AE; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=30.18 E-value=23 Score=24.94 Aligned_cols=39 Identities=31% Similarity=0.658 Sum_probs=28.8
Q ss_pred HHHHHHHHH-cCCCCCCCcCCCCCCCCeEEecccceechhhH
Q 021294 16 PRARLENLL-RQPGNRHCADCGSPDPKWVSLSTGVFICIKCS 56 (314)
Q Consensus 16 ~~~~~~~l~-~~~~N~~C~dC~~~~p~w~s~~~g~~~C~~C~ 56 (314)
.++.++++- .+...-.|.-||...-.. ...||+-|..|.
T Consensus 21 lRK~vkkie~~q~~ky~CpfCGk~~vkR--~a~GIW~C~kCg 60 (83)
T 3j21_i 21 IRRRVAAVEAKMRQKHTCPVCGRKAVKR--ISTGIWQCQKCG 60 (83)
T ss_dssp HHHHHHHHHHHHHSCBCCSSSCSSCEEE--EETTEEEETTTC
T ss_pred HHHHHHHHHHHhhcccCCCCCCCceeEe--cCcCeEEcCCCC
Confidence 466666654 456788999999886444 457999999993
No 113
>3a1b_A DNA (cytosine-5)-methyltransferase 3A, histone H3; zinc-finger, histone binding, chromosomal protein, DNA damag repair, DNA-binding, methylation; HET: DNA; 2.29A {Homo sapiens} PDB: 3a1a_A*
Probab=28.10 E-value=44 Score=26.51 Aligned_cols=49 Identities=12% Similarity=0.114 Sum_probs=34.2
Q ss_pred CCCCCcHHHHHHHHHcCC--CCCCCcCCCCCCCCeEEecccceechhhHHH
Q 021294 10 PKNVSGPRARLENLLRQP--GNRHCADCGSPDPKWVSLSTGVFICIKCSGI 58 (314)
Q Consensus 10 ~~~~~~~~~~~~~l~~~~--~N~~C~dC~~~~p~w~s~~~g~~~C~~C~~~ 58 (314)
|+..+-.+++..+++..- -+..|.-||..++...=--|.+.+|..|...
T Consensus 15 ~~~~~~r~~~~~~v~~~~~~~e~~Ct~CG~~~~~~~HPlf~v~lC~~Ck~~ 65 (159)
T 3a1b_A 15 APRKQLRERLVYEVRQKCRNIEDICISCGSLNVTLEHPLFVGGMCQNCKNC 65 (159)
T ss_dssp --CHHHHHHHHHHHHTTSSCGGGSBTTTCCSCCCEECSSBSSEECHHHHHH
T ss_pred cchHHHHHhhhHHHHhccCCccCcccCCCCcCccccCCCccchhhHHHHHH
Confidence 344344445566666543 4589999999988766667899999999853
No 114
>3j21_d 50S ribosomal protein L34E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=28.03 E-value=22 Score=25.40 Aligned_cols=30 Identities=33% Similarity=0.748 Sum_probs=20.1
Q ss_pred CCCCCCcCCCCC-------CCC----------eEEecccceechhhHH
Q 021294 27 PGNRHCADCGSP-------DPK----------WVSLSTGVFICIKCSG 57 (314)
Q Consensus 27 ~~N~~C~dC~~~-------~p~----------w~s~~~g~~~C~~C~~ 57 (314)
+.--.|+|||.+ -|. -++=.|| .+|..|--
T Consensus 31 ~~~pkC~~cg~~L~Gi~~~Rp~~~~rlsK~~KtvsRaYG-~lC~~Cvr 77 (89)
T 3j21_d 31 PKIAHCAMCGRPLNGIPRGRPVEMRKLPKTKKRPERPMP-HLCPRCMR 77 (89)
T ss_dssp CCCCBCSSSCCBCTTCCCCCTTGGGGSCHHHHCCSSSCT-TSCHHHHH
T ss_pred CCCCCCCCCCCccCCccCccHHHHHhcccCCCCcCCCcc-cchHHHHH
Confidence 334469999964 222 3455789 99999954
No 115
>4bbr_M Transcription initiation factor IIB; RNA polymerase, TFIIB; 3.40A {Saccharomyces cerevisiae} PDB: 3k7a_M 4bbs_M
Probab=27.81 E-value=29 Score=31.26 Aligned_cols=27 Identities=30% Similarity=0.664 Sum_probs=20.4
Q ss_pred CCcCCCCCCCCe-EEecccceechhhHH
Q 021294 31 HCADCGSPDPKW-VSLSTGVFICIKCSG 57 (314)
Q Consensus 31 ~C~dC~~~~p~w-~s~~~g~~~C~~C~~ 57 (314)
.|-+||...|.- ....-|-.||..|.-
T Consensus 23 ~Cp~C~~~~~~lv~D~~~G~~vC~~CGl 50 (345)
T 4bbr_M 23 TCPECKVYPPKIVERFSEGDVVCALCGL 50 (345)
T ss_dssp CCSSCCCSSCCEEEEGGGTEEEETTTCB
T ss_pred cCCCCCCCCCceeEECCCCcEEeCCCCC
Confidence 799999854543 245779999999953
No 116
>2uzg_A Ubiquitin carboxyl-terminal hydrolase 33; UBL conjugation pathway, DE-ubiquitination, alternative splicing, metal-binding, thiol protease; NMR {Homo sapiens} SCOP: g.44.1.5
Probab=27.64 E-value=40 Score=24.29 Aligned_cols=34 Identities=29% Similarity=0.656 Sum_probs=24.8
Q ss_pred CCCCCCcCCCCCCCC-eEEec--ccceec----hhhHHHHh
Q 021294 27 PGNRHCADCGSPDPK-WVSLS--TGVFIC----IKCSGIHR 60 (314)
Q Consensus 27 ~~N~~C~dC~~~~p~-w~s~~--~g~~~C----~~C~~~Hr 60 (314)
+....|.+|++..+. |+.+. =|-+-| -.-+-.|-
T Consensus 23 ~~~~~C~~C~~~~~~lw~CL~~~Cg~vgCgr~~~~Ha~~H~ 63 (97)
T 2uzg_A 23 KSLGTCQDCKVQGPNLWACLENRCSYVGCGESQVDHSTIHS 63 (97)
T ss_dssp HTTTCCSSSCCCCSSCEEECCTTCCCEECCTTTTCHHHHHH
T ss_pred CCCCcCcCcCCCCCCceeeecccCCCcccCCCcChHHHHHh
Confidence 356789999966655 99998 888888 44555663
No 117
>3c5k_A HD6, histone deacetylase 6; HDAC6, zinc finger, actin-binding, chromatin regulator, cytoplasm, hydrolase, metal-binding, nucleus, phosphoprotein; 1.55A {Homo sapiens} PDB: 3gv4_A 3phd_A
Probab=27.48 E-value=48 Score=24.47 Aligned_cols=31 Identities=32% Similarity=0.603 Sum_probs=24.7
Q ss_pred CCCCcCCCCCCCCeEEecccceech----hhHHHH
Q 021294 29 NRHCADCGSPDPKWVSLSTGVFICI----KCSGIH 59 (314)
Q Consensus 29 N~~C~dC~~~~p~w~s~~~g~~~C~----~C~~~H 59 (314)
...|.+|++....|+.+.=|-+-|. .-+-.|
T Consensus 24 ~~~C~~C~~~~~~W~CL~CG~vgCgr~~~~HA~~H 58 (109)
T 3c5k_A 24 TQPCGDCGTIQENWVCLSCYQVYCGRYINGHMLQH 58 (109)
T ss_dssp TCCCTTTCCCSSEEEETTTCCEEECTTTTCHHHHH
T ss_pred CCcCccccCCCCeeeeeecCccccCCCcChHHHHH
Confidence 5789999999989998888888883 445555
No 118
>1qyp_A RNA polymerase II; transcription, RPB9, Zn ribbon, hyperthermophilic, extremophIle; NMR {Thermococcus celer} SCOP: g.41.3.1
Probab=27.30 E-value=20 Score=23.03 Aligned_cols=28 Identities=29% Similarity=0.860 Sum_probs=21.4
Q ss_pred CCCCcCCCCCCCCeEEeccc--------ceechhhH
Q 021294 29 NRHCADCGSPDPKWVSLSTG--------VFICIKCS 56 (314)
Q Consensus 29 N~~C~dC~~~~p~w~s~~~g--------~~~C~~C~ 56 (314)
+..|..||.....|..+-+. .++|..|.
T Consensus 15 ~~~Cp~Cg~~~~~~~q~Q~rsadep~T~fy~C~~Cg 50 (57)
T 1qyp_A 15 KITCPKCGNDTAYWWEMQTRAGDEPSTIFYKCTKCG 50 (57)
T ss_dssp ECCCTTTCCSEEEEEEECCSSSSCSSEEEEEESSSC
T ss_pred EeECCCCCCCEEEEEEeecccCCCCCcEEEEcCCCC
Confidence 56799999988888766552 47898884
No 119
>3iz5_m 60S ribosomal protein L43 (L37AE); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_m 1ysh_D 2zkr_z
Probab=24.60 E-value=33 Score=24.61 Aligned_cols=38 Identities=24% Similarity=0.519 Sum_probs=27.9
Q ss_pred HHHHHHHHH-cCCCCCCCcCCCCCCCCeEEecccceechhh
Q 021294 16 PRARLENLL-RQPGNRHCADCGSPDPKWVSLSTGVFICIKC 55 (314)
Q Consensus 16 ~~~~~~~l~-~~~~N~~C~dC~~~~p~w~s~~~g~~~C~~C 55 (314)
.++.++++- .+...-.|.-||...-.. ...||+-|..|
T Consensus 22 lRK~vkkie~~q~~ky~CpfCgk~~vkR--~a~GIW~C~~C 60 (92)
T 3iz5_m 22 LRKQIKKMEVSQHSKYFCEFCGKFAVKR--KAVGIWGCKDC 60 (92)
T ss_dssp HHHHHHHHHHHHHSCBCCTTTCSSCBEE--EETTEEECSSS
T ss_pred HHHHHHHHHHHHhccccCcccCCCeeEe--cCcceEEcCCC
Confidence 455565544 456778999999886544 35799999999
No 120
>2g45_A Ubiquitin carboxyl-terminal hydrolase 5; zinc finger, hydrolase; 1.99A {Homo sapiens} SCOP: g.44.1.5 PDB: 2g43_A 2l80_A
Probab=22.73 E-value=46 Score=25.43 Aligned_cols=26 Identities=27% Similarity=0.902 Sum_probs=20.2
Q ss_pred CCCCCCcCCCCCCCCeEEecccceec
Q 021294 27 PGNRHCADCGSPDPKWVSLSTGVFIC 52 (314)
Q Consensus 27 ~~N~~C~dC~~~~p~w~s~~~g~~~C 52 (314)
|....|.+|+...--|+.+.-|-+-|
T Consensus 32 ~~~~~C~~C~~~~~LwlCL~CG~vgC 57 (129)
T 2g45_A 32 PCGWKCSKCDMRENLWLNLTDGSILC 57 (129)
T ss_dssp CCBCCCSSSSCCSSEEEETTTCCEEE
T ss_pred CCCCcCccccCcCceEEeccCCcccc
Confidence 45678999999887777777776666
No 121
>2kq9_A DNAK suppressor protein; zinc binding protein, structural genomics, PSI-2, protein ST initiative; NMR {Agrobacterium tumefaciens str}
Probab=20.65 E-value=36 Score=25.20 Aligned_cols=32 Identities=16% Similarity=0.372 Sum_probs=20.8
Q ss_pred CCCCCCCcCCCCCCCC-eEEecccceechhhHH
Q 021294 26 QPGNRHCADCGSPDPK-WVSLSTGVFICIKCSG 57 (314)
Q Consensus 26 ~~~N~~C~dC~~~~p~-w~s~~~g~~~C~~C~~ 57 (314)
.+.-..|.+||.+=|. =.-.--++-.|+.|..
T Consensus 78 ~g~yg~C~~Cg~~I~~~Rl~a~P~a~~Ci~Cq~ 110 (112)
T 2kq9_A 78 SGTFGTCVKCGKRISEDRLKAVPYTPFCQECAA 110 (112)
T ss_dssp HTCCSEETTTTEECCHHHHHHCSCCSSCHHHHH
T ss_pred CCCcCeeCCCCCcccHHHHhcCCCcchhHHHHh
Confidence 4677899999986431 1111225778999975
No 122
>3k7a_M Transcription initiation factor IIB; RNA polymerase II, TFIIB, DNA-binding, DNA- directed RNA polymerase, isopeptide bond, magnesium; 3.80A {Saccharomyces cerevisiae}
Probab=20.46 E-value=30 Score=31.08 Aligned_cols=30 Identities=30% Similarity=0.646 Sum_probs=21.8
Q ss_pred CCCcCCCCCCCCeE-EecccceechhhHHHH
Q 021294 30 RHCADCGSPDPKWV-SLSTGVFICIKCSGIH 59 (314)
Q Consensus 30 ~~C~dC~~~~p~w~-s~~~g~~~C~~C~~~H 59 (314)
..|-+||...|.-+ ...-|-.||..|.-|-
T Consensus 22 ~~Cp~Cg~~~~~iv~D~~~G~~vC~~CG~Vl 52 (345)
T 3k7a_M 22 LTCPECKVYPPKIVERFSEGDVVCALCGLVL 52 (345)
T ss_dssp CCCSTTCCSCCCCCCCSSSCSCCCSSSCCCC
T ss_pred CcCcCCCCCCCceEEECCCCCEecCCCCeEc
Confidence 47999999754222 3457999999997654
Done!