Your job contains 1 sequence.
>021295
MKDRKTGQPRGFGFVTYADPSVVDKVIEDTHIINGKQVEIKRTIPKGAVGSKDFKTKKIF
VGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNK
LELAGAQVEVKKAEPKKPNLPQPSYRRYNNPKPAYGSGFGDAYGGYGGGGFAGGGFGGSG
GGGGGGGYRSSGAYGVRGGGYGGYGVGGEFGGYGGYGGGMGAYRGEPSSLGYSGRYGGFN
RGYDVTGDYGGLNESYGGYGGSGVGGGGGYGGGPSGYDIGLGSSYGGSSGGAFFGSRGGY
GGAGGSSRYHPYGR
The BLAST search returned 4 gene products which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 021295
(314 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2168848 - symbol:AT5G40490 species:3702 "Arabi... 609 2.8e-67 3
TAIR|locus:504955752 - symbol:AT3G13224 species:3702 "Ara... 575 4.2e-59 2
TAIR|locus:2007903 - symbol:AT1G17640 species:3702 "Arabi... 411 1.7e-40 2
TAIR|locus:2133862 - symbol:AT4G26650 species:3702 "Arabi... 242 3.1e-36 3
TAIR|locus:2173967 - symbol:AT5G55550 species:3702 "Arabi... 344 1.9e-33 2
TAIR|locus:2129590 - symbol:AT4G14300 species:3702 "Arabi... 327 8.8e-32 2
TAIR|locus:2077392 - symbol:AT3G07810 species:3702 "Arabi... 336 2.1e-30 1
TAIR|locus:2050992 - symbol:AT2G33410 species:3702 "Arabi... 325 2.7e-29 1
ASPGD|ASPL0000063757 - symbol:AN10941 species:162425 "Eme... 321 2.6e-28 1
CGD|CAL0003460 - symbol:orf19.5989 species:5476 "Candida ... 306 5.0e-27 1
FB|FBgn0004838 - symbol:Hrb27C "Heterogeneous nuclear rib... 276 1.4e-26 2
FB|FBgn0260943 - symbol:Rbp6 "RNA-binding protein 6" spec... 299 1.5e-26 1
SGD|S000005483 - symbol:HRP1 "Subunit of cleavage factor ... 304 1.6e-26 1
TAIR|locus:2037633 - symbol:RBP1 "RNA-binding protein 1" ... 201 1.9e-26 2
POMBASE|SPBC660.15 - symbol:SPBC660.15 "mRNA cleavage fac... 297 5.3e-26 1
FB|FBgn0263396 - symbol:sqd "squid" species:7227 "Drosoph... 264 6.4e-26 2
WB|WBGene00003423 - symbol:msi-1 species:6239 "Caenorhabd... 293 6.6e-26 1
UNIPROTKB|Q96DH6 - symbol:MSI2 "RNA-binding protein Musas... 280 1.6e-24 1
MGI|MGI:1923876 - symbol:Msi2 "musashi RNA-binding protei... 280 1.6e-24 1
UNIPROTKB|B4DHE8 - symbol:MSI2 "RNA-binding protein Musas... 280 1.6e-24 1
ZFIN|ZDB-GENE-070212-1 - symbol:dazap1 "DAZ associated pr... 280 1.6e-24 1
FB|FBgn0001215 - symbol:Hrb98DE "Heterogeneous nuclear ri... 249 1.9e-24 2
ZFIN|ZDB-GENE-030826-25 - symbol:msi2a "musashi homolog 2... 275 5.3e-24 1
UNIPROTKB|J9P972 - symbol:DAZAP1 "Uncharacterized protein... 274 6.8e-24 1
FB|FBgn0011666 - symbol:msi "musashi" species:7227 "Droso... 281 9.4e-24 1
ZFIN|ZDB-GENE-040426-1268 - symbol:msi2b "musashi homolog... 272 1.3e-23 1
ZFIN|ZDB-GENE-050320-86 - symbol:msi1 "musashi homolog 1 ... 267 3.8e-23 1
UNIPROTKB|F1MS42 - symbol:MSI1 "Uncharacterized protein" ... 267 3.8e-23 1
UNIPROTKB|O43347 - symbol:MSI1 "RNA-binding protein Musas... 267 3.8e-23 1
UNIPROTKB|I3LPG0 - symbol:MSI1 "Uncharacterized protein" ... 267 3.8e-23 1
ZFIN|ZDB-GENE-030131-2249 - symbol:hnrnpa0a "heterogeneou... 240 4.3e-23 2
ZFIN|ZDB-GENE-040426-2516 - symbol:zgc:77052 "zgc:77052" ... 237 4.3e-23 2
MGI|MGI:107376 - symbol:Msi1 "musashi RNA-binding protein... 266 4.8e-23 1
RGD|628778 - symbol:Msi1 "musashi RNA-binding protein 1" ... 266 4.8e-23 1
UNIPROTKB|Q8K3P4 - symbol:Msi1 "RNA-binding protein Musas... 266 4.8e-23 1
UNIPROTKB|F1LRH1 - symbol:Msi1 "RNA-binding protein Musas... 266 4.8e-23 1
DICTYBASE|DDB_G0292422 - symbol:DDB_G0292422 "RNA-binding... 273 8.2e-23 1
UNIPROTKB|Q32P51 - symbol:HNRNPA1L2 "Heterogeneous nuclea... 242 1.1e-22 2
TAIR|locus:2115169 - symbol:AT4G36960 species:3702 "Arabi... 261 1.6e-22 1
UNIPROTKB|F1NIB2 - symbol:HNRNPAB "Uncharacterized protei... 237 1.8e-22 2
UNIPROTKB|F1NIB4 - symbol:HNRNPAB "Uncharacterized protei... 237 1.8e-22 2
RGD|1305280 - symbol:Dazap1 "DAZ associated protein 1" sp... 261 2.5e-22 1
UNIPROTKB|E2RK48 - symbol:MSI1 "Uncharacterized protein" ... 259 2.6e-22 1
ZFIN|ZDB-GENE-030131-6154 - symbol:hnrnpa0b "heterogeneou... 228 2.9e-22 2
FB|FBgn0004903 - symbol:Rb97D "Ribonuclear protein at 97D... 249 3.2e-22 2
UNIPROTKB|F1NTG9 - symbol:DAZAP1 "Uncharacterized protein... 259 3.6e-22 1
ZFIN|ZDB-GENE-040426-2717 - symbol:hnrpdl "heterogeneous ... 227 6.0e-22 2
ZFIN|ZDB-GENE-030131-185 - symbol:hnrnpab "heterogeneous ... 232 6.8e-22 2
UNIPROTKB|E1BAK6 - symbol:DAZAP1 "Uncharacterized protein... 256 7.9e-22 1
UNIPROTKB|K7EQ02 - symbol:DAZAP1 "DAZ-associated protein ... 254 9.0e-22 1
UNIPROTKB|I3LB68 - symbol:DAZAP1 "Uncharacterized protein... 256 9.6e-22 1
UNIPROTKB|E2R6E4 - symbol:DAZAP1 "Uncharacterized protein... 256 9.7e-22 1
UNIPROTKB|Q96EP5 - symbol:DAZAP1 "DAZ-associated protein ... 256 9.7e-22 1
UNIPROTKB|Q98SJ2 - symbol:dazap1 "DAZ-associated protein ... 253 1.1e-21 1
MGI|MGI:1917498 - symbol:Dazap1 "DAZ associated protein 1... 254 1.6e-21 1
UNIPROTKB|F2Z3S1 - symbol:Dazap1 "Protein Dazap1" species... 254 1.6e-21 1
WB|WBGene00001999 - symbol:hrp-1 species:6239 "Caenorhabd... 228 3.0e-21 2
UNIPROTKB|F1NCW4 - symbol:HNRNPD "Uncharacterized protein... 215 3.2e-21 2
UNIPROTKB|Q5ZIH1 - symbol:HNRNPD "Uncharacterized protein... 215 3.2e-21 2
UNIPROTKB|G3V6A5 - symbol:Hnrpd "Heterogeneous nuclear ri... 214 3.3e-21 2
UNIPROTKB|B4DTC3 - symbol:HNRNPD "cDNA FLJ54150, highly s... 214 4.1e-21 2
UNIPROTKB|H0Y8G5 - symbol:HNRNPD "Heterogeneous nuclear r... 214 4.1e-21 2
UNIPROTKB|P09867 - symbol:HNRNPA1 "Heterogeneous nuclear ... 226 5.2e-21 2
UNIPROTKB|F8VSB5 - symbol:HNRNPA1 "Heterogeneous nuclear ... 226 5.2e-21 2
UNIPROTKB|F8W1S7 - symbol:HNRNPA1 "Heterogeneous nuclear ... 226 5.2e-21 2
UNIPROTKB|F8W6I7 - symbol:HNRNPA1 "Heterogeneous nuclear ... 226 5.2e-21 2
UNIPROTKB|Q06A94 - symbol:HNRNPA1 "Uncharacterized protei... 226 5.2e-21 2
UNIPROTKB|A5A6H4 - symbol:HNRNPA1 "Heterogeneous nuclear ... 226 5.2e-21 2
UNIPROTKB|Q28521 - symbol:HNRNPA1 "Heterogeneous nuclear ... 226 5.2e-21 2
MGI|MGI:104820 - symbol:Hnrnpa1 "heterogeneous nuclear ri... 226 5.2e-21 2
UNIPROTKB|D4ACJ8 - symbol:Hnrnpa1 "Heterogeneous nuclear ... 226 5.2e-21 2
UNIPROTKB|Q5I0M7 - symbol:Hnrnpa1 "Hnrpa1 protein" specie... 226 5.2e-21 2
UNIPROTKB|E2QXH4 - symbol:HNRNPA2B1 "Uncharacterized prot... 217 5.2e-21 2
UNIPROTKB|E7EWI9 - symbol:HNRNPA3 "Heterogeneous nuclear ... 221 6.6e-21 2
ZFIN|ZDB-GENE-060224-1 - symbol:hnrnpa3 "heterogeneous nu... 220 6.6e-21 2
RGD|620365 - symbol:Hnrpd "heterogeneous nuclear ribonucl... 214 6.8e-21 2
UNIPROTKB|Q9JJ54 - symbol:Hnrnpd "Heterogeneous nuclear r... 214 6.8e-21 2
UNIPROTKB|Q9TTV2 - symbol:HNRNPA2B1 "Heterogeneous nuclea... 218 7.4e-21 2
ZFIN|ZDB-GENE-040426-1546 - symbol:zgc:66127 "zgc:66127" ... 225 7.5e-21 2
RGD|69234 - symbol:Hnrnpa1 "heterogeneous nuclear ribonuc... 224 8.4e-21 2
UNIPROTKB|Q5RBU8 - symbol:HNRNPA2B1 "Heterogeneous nuclea... 219 9.0e-21 2
UNIPROTKB|Q2HJ60 - symbol:HNRNPA2B1 "Heterogeneous nuclea... 217 9.8e-21 2
UNIPROTKB|Q5ZME1 - symbol:HNRNPA2B1 "Uncharacterized prot... 218 1.0e-20 2
UNIPROTKB|F6RSR1 - symbol:HNRNPA0 "Uncharacterized protei... 218 1.4e-20 2
UNIPROTKB|A6H6Y0 - symbol:HNRNPD "Uncharacterized protein... 214 1.5e-20 2
UNIPROTKB|E2RIX2 - symbol:HNRNPD "Uncharacterized protein... 214 1.5e-20 2
UNIPROTKB|Q14103 - symbol:HNRNPD "Heterogeneous nuclear r... 214 1.5e-20 2
MGI|MGI:101947 - symbol:Hnrnpd "heterogeneous nuclear rib... 214 1.5e-20 2
UNIPROTKB|F1LNF1 - symbol:Hnrnpa2b1 "Heterogeneous nuclea... 217 1.5e-20 2
UNIPROTKB|P09651 - symbol:HNRNPA1 "Heterogeneous nuclear ... 226 1.5e-20 2
UNIPROTKB|F1Q1K6 - symbol:HNRNPA2B1 "Uncharacterized prot... 217 1.6e-20 2
UNIPROTKB|P22626 - symbol:HNRNPA2B1 "Heterogeneous nuclea... 217 1.6e-20 2
MGI|MGI:104819 - symbol:Hnrnpa2b1 "heterogeneous nuclear ... 217 1.6e-20 2
RGD|1310403 - symbol:Hnrnpa2b1 "heterogeneous nuclear rib... 217 1.6e-20 2
UNIPROTKB|E2QYP1 - symbol:HNRNPA1 "Uncharacterized protei... 226 1.6e-20 2
UNIPROTKB|D4ACJ7 - symbol:Hnrnpa1 "RCG50547, isoform CRA_... 226 1.6e-20 2
UNIPROTKB|F1Q3G7 - symbol:HNRNPA1 "Uncharacterized protei... 226 2.1e-20 2
UNIPROTKB|F1NBB6 - symbol:LOC100859627 "Uncharacterized p... 218 2.2e-20 2
UNIPROTKB|F1LM82 - symbol:Hnrnpa2b1 "Heterogeneous nuclea... 217 2.2e-20 2
UNIPROTKB|E9PSU5 - symbol:E9PSU5 "Uncharacterized protein... 221 2.3e-20 2
WARNING: Descriptions of 1038 database sequences were not reported due to the
limiting value of parameter V = 100.
>TAIR|locus:2168848 [details] [associations]
symbol:AT5G40490 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0008150 "biological_process" evidence=ND] [GO:0005829 "cytosol"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005829 EMBL:CP002688
GenomeReviews:BA000015_GR GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 GO:GO:0030529 EMBL:AB009052 HOGENOM:HOG000234441
HSSP:Q61474 KO:K12741 eggNOG:NOG289504 EMBL:AY136466
IPI:IPI00518075 RefSeq:NP_198865.1 UniGene:At.30284
ProteinModelPortal:Q9FM47 SMR:Q9FM47 PaxDb:Q9FM47 PRIDE:Q9FM47
EnsemblPlants:AT5G40490.1 GeneID:834047 KEGG:ath:AT5G40490
TAIR:At5g40490 InParanoid:Q9FM47 OMA:YESEDMV PhylomeDB:Q9FM47
ProtClustDB:CLSN2916909 ArrayExpress:Q9FM47 Genevestigator:Q9FM47
Uniprot:Q9FM47
Length = 423
Score = 609 (219.4 bits), Expect = 2.8e-67, Sum P(3) = 2.8e-67
Identities = 114/147 (77%), Positives = 133/147 (90%)
Query: 1 MKDRKTGQPRGFGFVTYADPSVVDKVIEDTHIINGKQVEIKRTIPKGAVGSKDFKTKKIF 60
MKDRKTGQPRGFGFVTYAD SVVDKVI+D HII GKQVEIKRTIP+G++ S DFKTKKIF
Sbjct: 74 MKDRKTGQPRGFGFVTYADSSVVDKVIQDNHIIIGKQVEIKRTIPRGSMSSNDFKTKKIF 133
Query: 61 VGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNK 120
VGGIPSSV++DEFK+FFMQFG+++EHQIMRDHST RSRGFGF+T+++E VD LLAKGN+
Sbjct: 134 VGGIPSSVDDDEFKEFFMQFGELKEHQIMRDHSTGRSRGFGFVTYESEDMVDHLLAKGNR 193
Query: 121 LELAGAQVEVKKAEPKKPN-LPQPSYR 146
+EL+G QVE+KKAEPKKPN + PS R
Sbjct: 194 IELSGTQVEIKKAEPKKPNSVTTPSKR 220
Score = 152 (58.6 bits), Expect = 2.3e-17, Sum P(3) = 2.3e-17
Identities = 42/122 (34%), Positives = 64/122 (52%)
Query: 19 DPSVVDKVIEDTHIINGKQVE-IKRTIPKG---AVGSKDFKTKKIFVGGIPSSVNEDEFK 74
DP + VIED I + K E I+ K + G D KIFVGG+ EF
Sbjct: 2 DPYGTETVIED-EIHDPKPSEDIEDDDDKSQPHSGGGVD-SAGKIFVGGLARETTSAEFL 59
Query: 75 DFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVKKAE 134
F ++G++ + IM+D T + RGFGF+T+ VD ++ + N + + G QVE+K+
Sbjct: 60 KHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADSSVVDKVI-QDNHI-IIGKQVEIKRTI 117
Query: 135 PK 136
P+
Sbjct: 118 PR 119
Score = 65 (27.9 bits), Expect = 2.8e-67, Sum P(3) = 2.8e-67
Identities = 14/22 (63%), Positives = 16/22 (72%)
Query: 226 EPSSLGYSGRYGGFNRGYDVTG 247
EP+ LGYSGRYGG GY+ G
Sbjct: 290 EPA-LGYSGRYGGGGGGYNRGG 310
Score = 42 (19.8 bits), Expect = 7.1e-65, Sum P(3) = 7.1e-65
Identities = 9/22 (40%), Positives = 11/22 (50%)
Query: 226 EPSSLGYSGRYGGFNRGYDVTG 247
EP GY G G + GY +G
Sbjct: 333 EPGG-GYGGPSGSYGGGYGSSG 353
Score = 41 (19.5 bits), Expect = 9.0e-65, Sum P(3) = 9.0e-65
Identities = 6/12 (50%), Positives = 8/12 (66%)
Query: 231 GYSGRYGGFNRG 242
GY G +GG+ G
Sbjct: 267 GYGGEFGGYGGG 278
Score = 40 (19.1 bits), Expect = 2.8e-67, Sum P(3) = 2.8e-67
Identities = 6/6 (100%), Positives = 6/6 (100%)
Query: 309 YHPYGR 314
YHPYGR
Sbjct: 418 YHPYGR 423
>TAIR|locus:504955752 [details] [associations]
symbol:AT3G13224 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISM] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 HOGENOM:HOG000234441 HSSP:Q14103
KO:K12741 OMA:HAINGHH EMBL:AP002042 EMBL:AY080630 EMBL:AY123003
EMBL:AK221448 IPI:IPI00534312 RefSeq:NP_683559.2 UniGene:At.27259
ProteinModelPortal:Q9LHL2 SMR:Q9LHL2 IntAct:Q9LHL2 PRIDE:Q9LHL2
EnsemblPlants:AT3G13224.2 GeneID:820515 KEGG:ath:AT3G13224
TAIR:At3g13224 InParanoid:Q9LHL2 PhylomeDB:Q9LHL2
ProtClustDB:CLSN2918087 Genevestigator:Q9LHL2 Uniprot:Q9LHL2
Length = 358
Score = 575 (207.5 bits), Expect = 4.2e-59, Sum P(2) = 4.2e-59
Identities = 108/148 (72%), Positives = 128/148 (86%)
Query: 1 MKDRKTGQPRGFGFVTYADPSVVDKVIEDTHIINGKQVEIKRTIPKGAVG--SKDFKTKK 58
M+DR TGQPRGFGF+T+ADPSVVDKVIEDTH+INGKQVEIKRTIPKGA G SKD KTKK
Sbjct: 51 MRDRHTGQPRGFGFITFADPSVVDKVIEDTHVINGKQVEIKRTIPKGAGGNQSKDIKTKK 110
Query: 59 IFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKG 118
IFVGGIPS+V EDE KDFF ++G+V EHQ++RDH T+RSRGFGF+ FD+E+ VD+LL+KG
Sbjct: 111 IFVGGIPSTVTEDELKDFFAKYGNVVEHQVIRDHETNRSRGFGFVIFDSEEVVDELLSKG 170
Query: 119 NKLELAGAQVEVKKAEPKKP-NLPQPSY 145
N +++A QVE+KKAEPKK N PSY
Sbjct: 171 NMIDMADTQVEIKKAEPKKSLNRSPPSY 198
Score = 147 (56.8 bits), Expect = 6.4e-13, Sum P(2) = 6.4e-13
Identities = 30/79 (37%), Positives = 44/79 (55%)
Query: 58 KIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAK 117
KIF+GG+ F F ++G++ + IMRD T + RGFGFITF VD ++
Sbjct: 20 KIFIGGLHKDTTNTVFNKHFGKYGEITDSVIMRDRHTGQPRGFGFITFADPSVVDKVIED 79
Query: 118 GNKLELAGAQVEVKKAEPK 136
+ + G QVE+K+ PK
Sbjct: 80 THVIN--GKQVEIKRTIPK 96
Score = 49 (22.3 bits), Expect = 4.2e-59, Sum P(2) = 4.2e-59
Identities = 9/16 (56%), Positives = 10/16 (62%)
Query: 228 SSLGYSGRYGGFNRGY 243
S Y G YGGF+ GY
Sbjct: 210 SYASYGGPYGGFDGGY 225
Score = 47 (21.6 bits), Expect = 6.9e-59, Sum P(2) = 6.9e-59
Identities = 10/22 (45%), Positives = 13/22 (59%)
Query: 226 EPSSLGYSGRYGGFNRGYDVTG 247
EP LGYS R+G + G+ G
Sbjct: 275 EPP-LGYSSRFGPYGSGFGGEG 295
>TAIR|locus:2007903 [details] [associations]
symbol:AT1G17640 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005737 "cytoplasm" evidence=ISM] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002684 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
KO:K12741 OMA:GHQTGYK IPI:IPI00519530 RefSeq:NP_173208.1
UniGene:At.51654 ProteinModelPortal:F4I906 SMR:F4I906 PRIDE:F4I906
EnsemblPlants:AT1G17640.1 GeneID:838341 KEGG:ath:AT1G17640
Uniprot:F4I906
Length = 369
Score = 411 (149.7 bits), Expect = 1.7e-40, Sum P(2) = 1.7e-40
Identities = 80/152 (52%), Positives = 108/152 (71%)
Query: 1 MKDRKTGQPRGFGFVTYADPSVVDKVIEDTHIINGKQVEIKRTIPKGAVGSKDFK----T 56
M DR TG PRGFGFVT+AD +V +KV+E+ H+I+ ++V++KRT+P+G + D K T
Sbjct: 98 MTDRITGNPRGFGFVTFADSAVAEKVLEEDHVIDDRKVDLKRTLPRGDKDT-DIKAVSKT 156
Query: 57 KKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLA 116
+KIFVGG+P + EDE K++F +GD+ EHQIM DH T RSRGFGF+TF TE +VD L +
Sbjct: 157 RKIFVGGLPPLLEEDELKNYFCVYGDIIEHQIMYDHHTGRSRGFGFVTFQTEDSVDRLFS 216
Query: 117 KGNKLELAGAQVEVKKAEPKKPNLPQPSYRRY 148
G EL QVE+K+AEPK+ S+R Y
Sbjct: 217 DGKVHELGDKQVEIKRAEPKRTGRDN-SFRSY 247
Score = 130 (50.8 bits), Expect = 3.9e-08, Sum P(2) = 3.9e-08
Identities = 27/99 (27%), Positives = 52/99 (52%)
Query: 38 VEIKRTIPKGAVGSKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRS 97
+++K ++ S K+FVGG+ + F ++F +FG+V + IM D T
Sbjct: 47 IQMKHSVDHRHSSSSMSSPGKLFVGGVSWETTAETFANYFGKFGEVVDSVIMTDRITGNP 106
Query: 98 RGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVKKAEPK 136
RGFGF+TF + +L + + ++ +V++K+ P+
Sbjct: 107 RGFGFVTFADSAVAEKVLEEDHVID--DRKVDLKRTLPR 143
Score = 36 (17.7 bits), Expect = 1.7e-40, Sum P(2) = 1.7e-40
Identities = 7/17 (41%), Positives = 9/17 (52%)
Query: 231 GYSGRYGGFNRGYDVTG 247
G+ G GG+ GY G
Sbjct: 292 GFYGYGGGYGYGYGYGG 308
>TAIR|locus:2133862 [details] [associations]
symbol:AT4G26650 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005737 "cytoplasm" evidence=ISM] [GO:0042732 "D-xylose
metabolic process" evidence=RCA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002687 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
KO:K14411 HSSP:Q61474 EMBL:AF419605 EMBL:AY097345 IPI:IPI00533249
RefSeq:NP_567753.1 UniGene:At.20416 UniGene:At.67937
ProteinModelPortal:Q8W569 SMR:Q8W569 STRING:Q8W569 PRIDE:Q8W569
EnsemblPlants:AT4G26650.1 GeneID:828772 KEGG:ath:AT4G26650
TAIR:At4g26650 InParanoid:Q8W569 OMA:LVEAVIM PhylomeDB:Q8W569
ProtClustDB:CLSN2689626 Genevestigator:Q8W569 Uniprot:Q8W569
Length = 455
Score = 242 (90.2 bits), Expect = 3.1e-36, Sum P(3) = 3.1e-36
Identities = 49/90 (54%), Positives = 66/90 (73%)
Query: 55 KTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDL 114
+TKKIFVGG+PSS+ E EFK++F QFG + + +M DH+T R RGFGFITFD+E++VD +
Sbjct: 120 RTKKIFVGGLPSSITEAEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDSEESVDMV 179
Query: 115 LAKGNKLELAGAQVEVKKAEPKKPNLPQPS 144
L K EL G VEVK+A PK+ + P+
Sbjct: 180 LHKTFH-ELNGKMVEVKRAVPKELSSTTPN 208
Score = 154 (59.3 bits), Expect = 3.1e-36, Sum P(3) = 3.1e-36
Identities = 26/46 (56%), Positives = 37/46 (80%)
Query: 1 MKDRKTGQPRGFGFVTYADPSVVDKVIEDTHIINGKQVEIKRTIPK 46
M+DR TG+ RGFGF+ +ADPSV ++VI D HII+G+ VE K+ +P+
Sbjct: 47 MRDRTTGRARGFGFIVFADPSVAERVIMDKHIIDGRTVEAKKAVPR 92
Score = 154 (59.3 bits), Expect = 5.0e-12, Sum P(2) = 5.0e-12
Identities = 34/94 (36%), Positives = 55/94 (58%)
Query: 58 KIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAK 117
K+F+GGI +E+ +++F ++GD+ E IMRD +T R+RGFGFI F + ++
Sbjct: 16 KLFIGGISWDTDEERLQEYFGKYGDLVEAVIMRDRTTGRARGFGFIVFADPSVAERVIM- 74
Query: 118 GNKLELAGAQVEVKKAEPKKPNLPQPSYRRYNNP 151
+K + G VE KKA P+ Q +R+ +P
Sbjct: 75 -DKHIIDGRTVEAKKAVPRDD---QQVLKRHASP 104
Score = 127 (49.8 bits), Expect = 3.5e-07, Sum P(2) = 3.5e-07
Identities = 30/82 (36%), Positives = 41/82 (50%)
Query: 1 MKDRKTGQPRGFGFVTYADPSVVDKVIEDT-HIINGKQVEIKRTIPKGAVGSKDFKTKKI 59
M D T +PRGFGF+T+ VD V+ T H +NGK VE+KR +PK + ++ I
Sbjct: 154 MYDHNTQRPRGFGFITFDSEESVDMVLHKTFHELNGKMVEVKRAVPKELSSTTPNRSPLI 213
Query: 60 FVGGIPSSV-NEDEFKDFFMQF 80
G V N +F F
Sbjct: 214 GYGNNYGVVPNRSSANSYFNSF 235
Score = 37 (18.1 bits), Expect = 3.1e-36, Sum P(3) = 3.1e-36
Identities = 8/14 (57%), Positives = 9/14 (64%)
Query: 228 SSLGYSGRYGGFNR 241
+S GYSG Y NR
Sbjct: 434 ASEGYSGNYNVGNR 447
>TAIR|locus:2173967 [details] [associations]
symbol:AT5G55550 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISM] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002688 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
KO:K14411 HSSP:Q61474 ProtClustDB:CLSN2689626 EMBL:AY050796
EMBL:AY096460 IPI:IPI00543007 RefSeq:NP_568826.1 RefSeq:NP_974937.1
UniGene:At.6910 ProteinModelPortal:Q949Z3 SMR:Q949Z3 PRIDE:Q949Z3
EnsemblPlants:AT5G55550.2 EnsemblPlants:AT5G55550.3 GeneID:835649
KEGG:ath:AT5G55550 TAIR:At5g55550 InParanoid:Q949Z3 OMA:VSERVIM
PhylomeDB:Q949Z3 Genevestigator:Q949Z3 Uniprot:Q949Z3
Length = 460
Score = 344 (126.2 bits), Expect = 1.9e-33, Sum P(2) = 1.9e-33
Identities = 74/153 (48%), Positives = 100/153 (65%)
Query: 1 MKDRKTGQPRGFGFVTYADPSVVDKVIEDTHIINGKQVEIKRTIPK-------------- 46
M+DR TG+ RGFGF+ +ADP V ++VI D HII+G+ VE K+ +P+
Sbjct: 38 MRDRATGRARGFGFIVFADPCVSERVIMDKHIIDGRTVEAKKAVPRDDQQVLKRHASPIH 97
Query: 47 --GAVGSKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFIT 104
V +TKKIFVGG+PSS+ E+EFK++F QFG + + +M DH+T R RGFGFIT
Sbjct: 98 LMSPVHGGGGRTKKIFVGGLPSSITEEEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFIT 157
Query: 105 FDTEQAVDDLLAKGNKLELAGAQVEVKKAEPKK 137
FD++ AVD +L K EL G VEVK+A PK+
Sbjct: 158 FDSDDAVDRVLHKTFH-ELNGKLVEVKRAVPKE 189
Score = 162 (62.1 bits), Expect = 9.0e-13, Sum P(2) = 9.0e-13
Identities = 36/94 (38%), Positives = 54/94 (57%)
Query: 58 KIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAK 117
K+F+GGI +E+ +D+F +GDV E IMRD +T R+RGFGFI F + V + +
Sbjct: 7 KLFIGGISWDTDEERLRDYFSNYGDVVEAVIMRDRATGRARGFGFIVF-ADPCVSERVIM 65
Query: 118 GNKLELAGAQVEVKKAEPKKPNLPQPSYRRYNNP 151
+ + G VE KKA P+ Q +R+ +P
Sbjct: 66 DKHI-IDGRTVEAKKAVPRDD---QQVLKRHASP 95
Score = 36 (17.7 bits), Expect = 1.9e-33, Sum P(2) = 1.9e-33
Identities = 8/17 (47%), Positives = 8/17 (47%)
Query: 227 PSSLGYSGRYGGFNRGY 243
PSS S GF R Y
Sbjct: 343 PSSSAVSNDNNGFGRNY 359
>TAIR|locus:2129590 [details] [associations]
symbol:AT4G14300 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0008150 "biological_process" evidence=ND] [GO:0005829 "cytosol"
evidence=RCA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 EMBL:CP002687 GO:GO:0000166
Gene3D:3.30.70.330 EMBL:Z97335 EMBL:AL161538 GO:GO:0003676
GO:GO:0030529 eggNOG:COG0724 HOGENOM:HOG000234441 KO:K14411
HSSP:Q61474 EMBL:AJ303457 EMBL:AK226323 IPI:IPI00517003 PIR:G71404
RefSeq:NP_193166.2 UniGene:At.33295 ProteinModelPortal:Q8W034
SMR:Q8W034 IntAct:Q8W034 MINT:MINT-1163850 STRING:Q8W034
PaxDb:O23288 PRIDE:Q8W034 EnsemblPlants:AT4G14300.1 GeneID:827071
KEGG:ath:AT4G14300 TAIR:At4g14300 InParanoid:Q8W034 OMA:YGATNIP
PhylomeDB:Q8W034 ProtClustDB:CLSN2913105 Genevestigator:Q8W034
Uniprot:Q8W034
Length = 411
Score = 327 (120.2 bits), Expect = 8.8e-32, Sum P(2) = 8.8e-32
Identities = 68/155 (43%), Positives = 105/155 (67%)
Query: 1 MKDRKTGQPRGFGFVTYADPSVVDKVIEDTHIINGKQVEIKRTIPK------GAVGSKDF 54
M+D+ TG+PRGFGFV ++DPSV+D+V+++ H I+ ++V++KR + + G G+ +
Sbjct: 38 MRDKLTGRPRGFGFVIFSDPSVLDRVLQEKHSIDTREVDVKRAMSREEQQVSGRTGNLNT 97
Query: 55 ----------KTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFIT 104
KTKKIFVGG+P ++ ++EF+ +F +G V + IM D +T+R RGFGF++
Sbjct: 98 SRSSGGDAYNKTKKIFVGGLPPTLTDEEFRQYFEVYGPVTDVAIMYDQATNRPRGFGFVS 157
Query: 105 FDTEQAVDDLLAKGNKLELAGAQVEVKKAEPKKPN 139
FD+E AVD +L K +L+G QVEVK+A PK N
Sbjct: 158 FDSEDAVDSVLHKTFH-DLSGKQVEVKRALPKDAN 191
Score = 145 (56.1 bits), Expect = 3.3e-11, Sum P(2) = 3.3e-11
Identities = 28/76 (36%), Positives = 47/76 (61%)
Query: 58 KIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAK 117
K+FVGGI +ED+ ++ F +G+V + +MRD T R RGFGF+ F +D +L +
Sbjct: 7 KLFVGGISWETDEDKLREHFTNYGEVSQAIVMRDKLTGRPRGFGFVIFSDPSVLDRVLQE 66
Query: 118 GNKLELAGAQVEVKKA 133
+ ++ +V+VK+A
Sbjct: 67 KHSIDTR--EVDVKRA 80
Score = 37 (18.1 bits), Expect = 8.8e-32, Sum P(2) = 8.8e-32
Identities = 6/12 (50%), Positives = 8/12 (66%)
Query: 231 GYSGRYGGFNRG 242
GY+G GG+ G
Sbjct: 262 GYTGSAGGYGAG 273
>TAIR|locus:2077392 [details] [associations]
symbol:AT3G07810 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005576 "extracellular region" evidence=ISM] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002686 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
KO:K14411 IPI:IPI00546643 RefSeq:NP_850539.1 UniGene:At.19375
ProteinModelPortal:F4JFN7 SMR:F4JFN7 PRIDE:F4JFN7
EnsemblPlants:AT3G07810.2 GeneID:819972 KEGG:ath:AT3G07810
OMA:YYIGNTN Uniprot:F4JFN7
Length = 495
Score = 336 (123.3 bits), Expect = 2.1e-30, P = 2.1e-30
Identities = 75/159 (47%), Positives = 103/159 (64%)
Query: 1 MKDRKTGQPRGFGFVTYADPSVVDKVIEDTHIINGKQVEIKRTIPK-------------- 46
+KDR TG+ RGFGFV +ADP+V + VI + H I+G+ VE K+ +P+
Sbjct: 38 LKDRTTGRARGFGFVVFADPAVAEIVITEKHNIDGRLVEAKKAVPRDDQNMVNRSNSSSI 97
Query: 47 -GAVGSKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITF 105
G+ G +T+KIFVGG+PSSV E +FK +F QFG + +M DH+T R RGFGFIT+
Sbjct: 98 QGSPGGPG-RTRKIFVGGLPSSVTESDFKTYFEQFGTTTDVVVMYDHNTQRPRGFGFITY 156
Query: 106 DTEQAVDDLLAKGNKLELAGAQVEVKKAEPKKPNLPQPS 144
D+E+AV+ +L K EL G VEVK+A PK+ + P PS
Sbjct: 157 DSEEAVEKVLLKTFH-ELNGKMVEVKRAVPKELS-PGPS 193
Score = 163 (62.4 bits), Expect = 3.2e-11, P = 3.2e-11
Identities = 33/79 (41%), Positives = 50/79 (63%)
Query: 58 KIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAK 117
K+F+GGI NE+ K++F FG+V E I++D +T R+RGFGF+ F + AV +++
Sbjct: 7 KLFIGGISWDTNEERLKEYFSSFGEVIEAVILKDRTTGRARGFGFVVF-ADPAVAEIVIT 65
Query: 118 GNKLELAGAQVEVKKAEPK 136
K + G VE KKA P+
Sbjct: 66 -EKHNIDGRLVEAKKAVPR 83
>TAIR|locus:2050992 [details] [associations]
symbol:AT2G33410 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005575 "cellular_component" evidence=ND] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002685 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AC002332 HOGENOM:HOG000234441 KO:K14411 HSSP:Q61474
ProtClustDB:CLSN2913105 OMA:GNDSSYG EMBL:AY136298 EMBL:BT000416
IPI:IPI00531202 PIR:B84745 RefSeq:NP_180899.1 UniGene:At.22217
ProteinModelPortal:O22791 SMR:O22791 IntAct:O22791 STRING:O22791
PRIDE:O22791 ProMEX:O22791 EnsemblPlants:AT2G33410.1 GeneID:817905
KEGG:ath:AT2G33410 TAIR:At2g33410 InParanoid:O22791
PhylomeDB:O22791 ArrayExpress:O22791 Genevestigator:O22791
Uniprot:O22791
Length = 404
Score = 325 (119.5 bits), Expect = 2.7e-29, P = 2.7e-29
Identities = 69/155 (44%), Positives = 103/155 (66%)
Query: 1 MKDRKTGQPRGFGFVTYADPSVVDKVIEDTHIINGKQVEIKRTI------PKGAVG---- 50
M+++ TG+PRGFGFV ++DP+V+D+V++D H I+ + V++KR + P G G
Sbjct: 38 MREKATGRPRGFGFVAFSDPAVIDRVLQDKHHIDNRDVDVKRAMSREEQSPAGRSGTFNA 97
Query: 51 SKDF------KTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFIT 104
S++F +TKKIFVGG+P ++ DEF+ +F +G V + IM D +T R RGFGF++
Sbjct: 98 SRNFDSGANVRTKKIFVGGLPPALTSDEFRAYFETYGPVSDAVIMIDQTTQRPRGFGFVS 157
Query: 105 FDTEQAVDDLLAKGNKLELAGAQVEVKKAEPKKPN 139
FD+E +VD +L K +L G QVEVK+A PK N
Sbjct: 158 FDSEDSVDLVLHKTFH-DLNGKQVEVKRALPKDAN 191
Score = 144 (55.7 bits), Expect = 2.5e-09, P = 2.5e-09
Identities = 28/84 (33%), Positives = 49/84 (58%)
Query: 58 KIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAK 117
K+F+GGI +E+ +++F FG+V + +MR+ +T R RGFGF+ F +D +L
Sbjct: 7 KLFIGGISWDTDENLLREYFSNFGEVLQVTVMREKATGRPRGFGFVAFSDPAVIDRVLQ- 65
Query: 118 GNKLELAGAQVEVKKAEPKKPNLP 141
+K + V+VK+A ++ P
Sbjct: 66 -DKHHIDNRDVDVKRAMSREEQSP 88
>ASPGD|ASPL0000063757 [details] [associations]
symbol:AN10941 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005575 "cellular_component" evidence=ND]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0030529 EMBL:BN001304 ProteinModelPortal:C8VBB9
EnsemblFungi:CADANIAT00000536 HOGENOM:HOG000162494 OMA:MNPAMMQ
Uniprot:C8VBB9
Length = 559
Score = 321 (118.1 bits), Expect = 2.6e-28, P = 2.6e-28
Identities = 64/136 (47%), Positives = 89/136 (65%)
Query: 1 MKDRKTGQPRGFGFVTYADPSVVDKVIEDTHIINGKQVEIKRTIPKGAVGSKDFKTKKIF 60
M+D TG+ RGFGF+T+ DP V+ V+ H ++GK ++ KR IP+ + KT KIF
Sbjct: 142 MRDSATGRSRGFGFLTFKDPKTVNTVMVKEHYLDGKIIDPKRAIPR----DEQEKTSKIF 197
Query: 61 VGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNK 120
VGG+ E +FK FFMQFG V + +M D T R RGFGF+TFD+E AV+ L++
Sbjct: 198 VGGVSQEATEQDFKQFFMQFGRVIDATLMIDKDTGRPRGFGFVTFDSEAAVEAALSR--P 255
Query: 121 LELAGAQVEVKKAEPK 136
LE+ G +EVKKA+P+
Sbjct: 256 LEILGKTIEVKKAQPR 271
Score = 171 (65.3 bits), Expect = 5.5e-12, P = 5.5e-12
Identities = 36/92 (39%), Positives = 58/92 (63%)
Query: 45 PKGAVGSKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFIT 104
P+G G K+ K+F+GG+ + K++F QFG+VQE +MRD +T RSRGFGF+T
Sbjct: 101 PQGT-GIKE--DGKMFIGGLNWETTDQSLKEYFSQFGEVQECTVMRDSATGRSRGFGFLT 157
Query: 105 FDTEQAVDDLLAKGNKLELAGAQVEVKKAEPK 136
F + V+ ++ K + L+ G ++ K+A P+
Sbjct: 158 FKDPKTVNTVMVKEHYLD--GKIIDPKRAIPR 187
>CGD|CAL0003460 [details] [associations]
symbol:orf19.5989 species:5476 "Candida albicans" [GO:0010494
"cytoplasmic stress granule" evidence=IEA] [GO:0005849 "mRNA
cleavage factor complex" evidence=IEA] [GO:0006379 "mRNA cleavage"
evidence=IEA] [GO:0006378 "mRNA polyadenylation" evidence=IEA]
[GO:0003729 "mRNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
CGD:CAL0003460 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AACQ01000003 EMBL:AACQ01000004 eggNOG:COG0724 KO:K14411
RefSeq:XP_723052.1 RefSeq:XP_723199.1 ProteinModelPortal:Q5ANB5
SMR:Q5ANB5 STRING:Q5ANB5 GeneID:3635162 GeneID:3635323
KEGG:cal:CaO19.13410 KEGG:cal:CaO19.5989 Uniprot:Q5ANB5
Length = 475
Score = 306 (112.8 bits), Expect = 5.0e-27, P = 5.0e-27
Identities = 65/137 (47%), Positives = 88/137 (64%)
Query: 1 MKDRKTGQPRGFGFVTYADPSVVDKVIEDTHIINGKQVEIKRTIPKGAVGSKDFKTKKIF 60
MKD TG+ RGFGF+T+ D VD +++D H+++GK ++ KR I K K KIF
Sbjct: 194 MKDSATGRSRGFGFLTFEDAKSVDALLKDRHVLDGKLIDPKRAISK----EDQEKVGKIF 249
Query: 61 VGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNK 120
VGGI V E+EF +FF QFG + + Q+M D T RSRGFGF+T+D+ AVD + NK
Sbjct: 250 VGGIDPMVTEEEFDNFFSQFGKIIDCQLMIDKDTGRSRGFGFVTYDSPAAVDKVCV--NK 307
Query: 121 -LELAGAQVEVKKAEPK 136
L L G +EVK+A P+
Sbjct: 308 YLTLKGKAMEVKRAAPR 324
Score = 150 (57.9 bits), Expect = 7.6e-10, P = 7.6e-10
Identities = 29/82 (35%), Positives = 52/82 (63%)
Query: 56 TKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLL 115
++K F+GG+ E+ F ++G++ ++ IM+D +T RSRGFGF+TF+ ++VD LL
Sbjct: 161 SRKCFIGGLSWDTTEEALVSHFQKYGNIVDYTIMKDSATGRSRGFGFLTFEDAKSVDALL 220
Query: 116 AKGNKLELAGAQVEVKKAEPKK 137
+ L+ G ++ K+A K+
Sbjct: 221 KDRHVLD--GKLIDPKRAISKE 240
Score = 127 (49.8 bits), Expect = 2.3e-06, P = 2.3e-06
Identities = 24/48 (50%), Positives = 34/48 (70%)
Query: 1 MKDRKTGQPRGFGFVTYADPSVVDKVIEDTHI-INGKQVEIKRTIPKG 47
M D+ TG+ RGFGFVTY P+ VDKV + ++ + GK +E+KR P+G
Sbjct: 278 MIDKDTGRSRGFGFVTYDSPAAVDKVCVNKYLTLKGKAMEVKRAAPRG 325
>FB|FBgn0004838 [details] [associations]
symbol:Hrb27C "Heterogeneous nuclear ribonucleoprotein at
27C" species:7227 "Drosophila melanogaster" [GO:0030529
"ribonucleoprotein complex" evidence=ISS;NAS;IDA;IPI] [GO:0005730
"nucleolus" evidence=IDA] [GO:0003697 "single-stranded DNA binding"
evidence=IDA] [GO:0005654 "nucleoplasm" evidence=IDA] [GO:0005737
"cytoplasm" evidence=IDA] [GO:0006397 "mRNA processing"
evidence=ISS] [GO:0003729 "mRNA binding" evidence=ISS;NAS]
[GO:0048027 "mRNA 5'-UTR binding" evidence=NAS;TAS] [GO:0007319
"negative regulation of oskar mRNA translation" evidence=TAS]
[GO:0003730 "mRNA 3'-UTR binding" evidence=IDA;TAS] [GO:0007317
"regulation of pole plasm oskar mRNA localization" evidence=IMP]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0045451 "pole
plasm oskar mRNA localization" evidence=IMP] [GO:0048024
"regulation of mRNA splicing, via spliceosome" evidence=IMP]
[GO:0007298 "border follicle cell migration" evidence=IMP]
[GO:0045727 "positive regulation of translation" evidence=IDA]
[GO:0043234 "protein complex" evidence=IPI] [GO:0005515 "protein
binding" evidence=IPI] [GO:0007411 "axon guidance" evidence=IMP]
[GO:0046331 "lateral inhibition" evidence=IMP] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005737 GO:GO:0007411 GO:GO:0043234 GO:GO:0005654
EMBL:AE014134 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0007298
GO:GO:0048027 GO:GO:0003730 GO:GO:0003697 GO:GO:0030529
GO:GO:0046331 GO:GO:0045727 GO:GO:0048024 GO:GO:0007319
eggNOG:COG0724 GO:GO:0045451 KO:K14411 GeneTree:ENSGT00700000104255
EMBL:X62639 EMBL:DQ062784 EMBL:AY069699 EMBL:AY128430 EMBL:S51720
PIR:D41732 RefSeq:NP_001162897.1 RefSeq:NP_001162898.1
RefSeq:NP_001245917.1 RefSeq:NP_001245918.1 RefSeq:NP_001245919.1
RefSeq:NP_476869.1 RefSeq:NP_723228.1 RefSeq:NP_723229.1
UniGene:Dm.1997 ProteinModelPortal:P48809 SMR:P48809 IntAct:P48809
MINT:MINT-939547 STRING:P48809 PaxDb:P48809
EnsemblMetazoa:FBtr0079346 EnsemblMetazoa:FBtr0079347
EnsemblMetazoa:FBtr0079348 EnsemblMetazoa:FBtr0301403
EnsemblMetazoa:FBtr0301404 EnsemblMetazoa:FBtr0307030
EnsemblMetazoa:FBtr0307031 EnsemblMetazoa:FBtr0307032 GeneID:33968
KEGG:dme:Dmel_CG10377 CTD:33968 FlyBase:FBgn0004838
InParanoid:P48809 OMA:GGYDMYN OrthoDB:EOG4CJSZQ PhylomeDB:P48809
ChiTaRS:Hrb27C GenomeRNAi:33968 NextBio:786189 Bgee:P48809
GermOnline:CG10377 Uniprot:P48809
Length = 421
Score = 276 (102.2 bits), Expect = 1.4e-26, Sum P(2) = 1.4e-26
Identities = 55/137 (40%), Positives = 90/137 (65%)
Query: 1 MKDRKTGQPRGFGFVTYADPSVVDKVIED-THIINGKQVEIKRTIPKGAVGSKDFKTKKI 59
MK+ ++G+ RGFGFVT+ADP+ V+ V+++ H ++G+ ++ K P+ K K+
Sbjct: 39 MKNNESGRSRGFGFVTFADPTNVNHVLQNGPHTLDGRTIDPKPCNPRTLQKPKKGGGYKV 98
Query: 60 FVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGN 119
F+GG+PS+V E + + FF ++G V E IM D +SRGFGF++F+ E +V+ + +
Sbjct: 99 FLGGLPSNVTETDLRTFFNRYGKVTEVVIMYDQEKKKSRGFGFLSFEEESSVEHVTNE-R 157
Query: 120 KLELAGAQVEVKKAEPK 136
+ L G QVE+KKAEP+
Sbjct: 158 YINLNGKQVEIKKAEPR 174
Score = 136 (52.9 bits), Expect = 1.3e-10, Sum P(2) = 1.3e-10
Identities = 27/85 (31%), Positives = 47/85 (55%)
Query: 58 KIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAK 117
K+FVGG+ ++ +F +FGD+ + +M+++ + RSRGFGF+TF V+ +L
Sbjct: 8 KLFVGGLSWETTQENLSRYFCRFGDIIDCVVMKNNESGRSRGFGFVTFADPTNVNHVLQN 67
Query: 118 GNKLELAGAQVEVKKAEPKKPNLPQ 142
G L G ++ K P+ P+
Sbjct: 68 GPHT-LDGRTIDPKPCNPRTLQKPK 91
Score = 107 (42.7 bits), Expect = 0.00018, Sum P(2) = 0.00018
Identities = 24/64 (37%), Positives = 39/64 (60%)
Query: 1 MKDRKTGQPRGFGFVTYADPSVVDKVIEDTHI-INGKQVEIKRTIPKGAVGSKDFKTKKI 59
M D++ + RGFGF+++ + S V+ V + +I +NGKQVEIK+ P+ G ++
Sbjct: 128 MYDQEKKKSRGFGFLSFEEESSVEHVTNERYINLNGKQVEIKKAEPRDGSGGQNSNNST- 186
Query: 60 FVGG 63
VGG
Sbjct: 187 -VGG 189
Score = 41 (19.5 bits), Expect = 1.4e-26, Sum P(2) = 1.4e-26
Identities = 8/17 (47%), Positives = 9/17 (52%)
Query: 228 SSLGYSGRYGGFNRGYD 244
S G YGG+ GYD
Sbjct: 366 SKSGSEYDYGGYGSGYD 382
>FB|FBgn0260943 [details] [associations]
symbol:Rbp6 "RNA-binding protein 6" species:7227 "Drosophila
melanogaster" [GO:0003729 "mRNA binding" evidence=NAS] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005737
EMBL:AE014296 GO:GO:0008266 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0005844 eggNOG:COG0724 KO:K14411 GeneTree:ENSGT00700000104255
GO:GO:0048864 OMA:ENYISAA EMBL:AY122226 EMBL:S51715 PIR:F48110
RefSeq:NP_001097631.1 RefSeq:NP_001097632.1 RefSeq:NP_730245.2
UniGene:Dm.22292 HSSP:Q61474 ProteinModelPortal:Q9VVE5 SMR:Q9VVE5
DIP:DIP-19056N IntAct:Q9VVE5 MINT:MINT-918255
EnsemblMetazoa:FBtr0075285 GeneID:39919 KEGG:dme:Dmel_CG32169
UCSC:CG32169-RA CTD:39919 FlyBase:FBgn0260943 InParanoid:Q9VVE5
OrthoDB:EOG4MSBF6 GenomeRNAi:39919 NextBio:816085 Bgee:Q9VVE5
Uniprot:Q9VVE5
Length = 369
Score = 299 (110.3 bits), Expect = 1.5e-26, P = 1.5e-26
Identities = 62/142 (43%), Positives = 92/142 (64%)
Query: 1 MKDRKTGQPRGFGFVTYADPSVVDKVI-EDTHIINGKQVEIKRTIPKGAVGSKDFKTKKI 59
MKD T + RGFGFVT++DP+ VDKV+ + TH ++GK+V+ K P+ A +TKKI
Sbjct: 61 MKDPTTRRSRGFGFVTFSDPNSVDKVLTQGTHELDGKKVDPKVAFPRRAHPKMVTRTKKI 120
Query: 60 FVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGN 119
FVGG+ + ++ K +F QFG +++ +M D T+R RGFGF+TF +E VD + + +
Sbjct: 121 FVGGLSAPTTLEDVKSYFEQFGPIEDAMLMFDKQTNRHRGFGFVTFQSEDVVDKV-CEIH 179
Query: 120 KLELAGAQVEVKKAEPKKPNLP 141
E+ VE KKA+PK+ LP
Sbjct: 180 FHEINNKMVECKKAQPKEVMLP 201
Score = 176 (67.0 bits), Expect = 6.4e-13, P = 6.4e-13
Identities = 32/80 (40%), Positives = 53/80 (66%)
Query: 58 KIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAK 117
K+F+GG+ + + +D+F ++GD+ E +M+D +T RSRGFGF+TF +VD +L +
Sbjct: 30 KMFIGGLSWQTSPESLRDYFGRYGDISEAMVMKDPTTRRSRGFGFVTFSDPNSVDKVLTQ 89
Query: 118 GNKLELAGAQVEVKKAEPKK 137
G EL G +V+ K A P++
Sbjct: 90 GTH-ELDGKKVDPKVAFPRR 108
>SGD|S000005483 [details] [associations]
symbol:HRP1 "Subunit of cleavage factor I" species:4932
"Saccharomyces cerevisiae" [GO:0005634 "nucleus" evidence=IEA;IDA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA;IDA] [GO:0005737 "cytoplasm"
evidence=IEA;IDA] [GO:0010494 "cytoplasmic stress granule"
evidence=IDA] [GO:0006378 "mRNA polyadenylation" evidence=IMP;IDA]
[GO:0005849 "mRNA cleavage factor complex" evidence=IPI]
[GO:0006379 "mRNA cleavage" evidence=IDA] [GO:0003729 "mRNA
binding" evidence=IDA] [GO:0000184 "nuclear-transcribed mRNA
catabolic process, nonsense-mediated decay" evidence=IEA]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 SGD:S000005483
EMBL:BK006948 GO:GO:0000184 GO:GO:0000166 GO:GO:0003729
Gene3D:3.30.70.330 GO:GO:0006378 GO:GO:0010494 eggNOG:COG0724
GO:GO:0006379 GO:GO:0005849 KO:K14411 GeneTree:ENSGT00700000104255
EMBL:U35737 EMBL:U38535 EMBL:X95258 EMBL:Z74865 PIR:S66820
RefSeq:NP_014518.1 PDB:2CJK PDB:2KM8 PDBsum:2CJK PDBsum:2KM8
ProteinModelPortal:Q99383 SMR:Q99383 DIP:DIP-1371N IntAct:Q99383
MINT:MINT-395353 STRING:Q99383 PaxDb:Q99383 PeptideAtlas:Q99383
EnsemblFungi:YOL123W GeneID:853997 KEGG:sce:YOL123W CYGD:YOL123w
HOGENOM:HOG000248803 OMA:AREEQDK OrthoDB:EOG4TF3VC
EvolutionaryTrace:Q99383 NextBio:975491 Genevestigator:Q99383
GermOnline:YOL123W Uniprot:Q99383
Length = 534
Score = 304 (112.1 bits), Expect = 1.6e-26, P = 1.6e-26
Identities = 62/137 (45%), Positives = 93/137 (67%)
Query: 1 MKDRKTGQPRGFGFVTYADPSVVDKVIEDTHIINGKQVEIKRTIPKGAVGSKDFKTKKIF 60
MKD TG+ RGFGF+++ PS VD+V++ HI++GK ++ KR IP+ +D KT KIF
Sbjct: 191 MKDPATGRSRGFGFLSFEKPSSVDEVVKTQHILDGKVIDPKRAIPRD---EQD-KTGKIF 246
Query: 61 VGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNK 120
VGGI V EF++FF Q+G + + Q+M D T +SRGFGF+T+D+ AVD + NK
Sbjct: 247 VGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSADAVDRVCQ--NK 304
Query: 121 -LELAGAQVEVKKAEPK 136
++ ++E+K+AEP+
Sbjct: 305 FIDFKDRKIEIKRAEPR 321
Score = 153 (58.9 bits), Expect = 4.4e-10, P = 4.4e-10
Identities = 30/100 (30%), Positives = 62/100 (62%)
Query: 37 QVEIKRTIPKGAVGSKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSR 96
Q ++ +T + + ++ K+F+GG+ ED +++F ++G V + +IM+D +T R
Sbjct: 139 QQQVTQTKEERSKADLSKESCKMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATGR 198
Query: 97 SRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVKKAEPK 136
SRGFGF++F+ +VD+++ + L+ G ++ K+A P+
Sbjct: 199 SRGFGFLSFEKPSSVDEVVKTQHILD--GKVIDPKRAIPR 236
>TAIR|locus:2037633 [details] [associations]
symbol:RBP1 "RNA-binding protein 1" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISS] [GO:0005737 "cytoplasm"
evidence=ISM] [GO:0003727 "single-stranded RNA binding"
evidence=IDA] [GO:0008283 "cell proliferation" evidence=TAS]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 EMBL:CP002684 GO:GO:0000166 GO:GO:0008283
GO:GO:0003727 Gene3D:3.30.70.330 EMBL:AB077822 KO:K14411
EMBL:AC082643 HSSP:Q61474 EMBL:AY054536 EMBL:AY064643
IPI:IPI00548887 PIR:F96618 RefSeq:NP_176143.1 UniGene:At.17236
ProteinModelPortal:Q9C652 SMR:Q9C652 IntAct:Q9C652 STRING:Q9C652
PRIDE:Q9C652 EnsemblPlants:AT1G58470.1 GeneID:842216
KEGG:ath:AT1G58470 TAIR:At1g58470 InParanoid:Q9C652 OMA:VTYDSED
PhylomeDB:Q9C652 ProtClustDB:CLSN2914680 Genevestigator:Q9C652
Uniprot:Q9C652
Length = 360
Score = 201 (75.8 bits), Expect = 1.9e-26, Sum P(2) = 1.9e-26
Identities = 39/83 (46%), Positives = 60/83 (72%)
Query: 55 KTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDL 114
+TKKIFVGG+ S+ E+EFK +F +FG + +M D T+R RGFGF+T+D+E +V+ +
Sbjct: 118 RTKKIFVGGLSSNTTEEEFKSYFERFGRTTDVVVMHDGVTNRPRGFGFVTYDSEDSVE-V 176
Query: 115 LAKGNKLELAGAQVEVKKAEPKK 137
+ + N EL+ +VEVK+A PK+
Sbjct: 177 VMQSNFHELSDKRVEVKRAIPKE 199
Score = 129 (50.5 bits), Expect = 7.0e-07, P = 7.0e-07
Identities = 30/91 (32%), Positives = 48/91 (52%)
Query: 53 DFKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVD 112
D+ K+FVGGI +E+ K +F ++G V E + ++ T + RGFGF+ F + D
Sbjct: 2 DYDRYKLFVGGIAKETSEEALKQYFSRYGAVLEAVVAKEKVTGKPRGFGFVRFAND--CD 59
Query: 113 DLLAKGNKLELAGAQVEVKKAEPKKPNLPQP 143
+ A + + G V+V+KA K QP
Sbjct: 60 VVKALRDTHFILGKPVDVRKAIRKHELYQQP 90
Score = 120 (47.3 bits), Expect = 1.9e-26, Sum P(2) = 1.9e-26
Identities = 23/53 (43%), Positives = 35/53 (66%)
Query: 2 KDRKTGQPRGFGFVTYADPSVVDKVIEDTHIINGKQVEIKRTIPKGAVGSKDF 54
K++ TG+PRGFGFV +A+ V K + DTH I GK V++++ I K + + F
Sbjct: 39 KEKVTGKPRGFGFVRFANDCDVVKALRDTHFILGKPVDVRKAIRKHELYQQPF 91
Score = 116 (45.9 bits), Expect = 5.7e-05, P = 5.7e-05
Identities = 24/54 (44%), Positives = 34/54 (62%)
Query: 1 MKDRKTGQPRGFGFVTYADPSVVDKVIEDT-HIINGKQVEIKRTIPKGAVGSKD 53
M D T +PRGFGFVTY V+ V++ H ++ K+VE+KR IPK + S +
Sbjct: 152 MHDGVTNRPRGFGFVTYDSEDSVEVVMQSNFHELSDKRVEVKRAIPKEGIQSNN 205
>POMBASE|SPBC660.15 [details] [associations]
symbol:SPBC660.15 "mRNA cleavage factor complex subunit
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0003723
"RNA binding" evidence=ISO] [GO:0003730 "mRNA 3'-UTR binding"
evidence=NAS] [GO:0005634 "nucleus" evidence=ISO;IDA] [GO:0005737
"cytoplasm" evidence=ISO] [GO:0005849 "mRNA cleavage factor
complex" evidence=ISO] [GO:0006378 "mRNA polyadenylation"
evidence=ISO] [GO:0006379 "mRNA cleavage" evidence=ISO]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 PomBase:SPBC660.15 GO:GO:0005737 GO:GO:0000166
EMBL:CU329671 Gene3D:3.30.70.330 GO:GO:0006378 GO:GO:0003730
eggNOG:COG0724 GO:GO:0006379 GO:GO:0005849 KO:K14411 HSSP:Q14103
OrthoDB:EOG4TF3VC PIR:T40627 RefSeq:NP_595094.1
ProteinModelPortal:O94432 SMR:O94432 STRING:O94432
EnsemblFungi:SPBC660.15.1 GeneID:2541150 KEGG:spo:SPBC660.15
OMA:CHKANDG NextBio:20802263 Uniprot:O94432
Length = 474
Score = 297 (109.6 bits), Expect = 5.3e-26, P = 5.3e-26
Identities = 58/136 (42%), Positives = 89/136 (65%)
Query: 1 MKDRKTGQPRGFGFVTYADPSVVDKVIEDTHIINGKQVEIKRTIPKGAVGSKDFKTKKIF 60
M+D TG+ RGFGF+T+ +P V++V+ H ++GK ++ KR IP+ + KT K+F
Sbjct: 195 MRDSTTGRSRGFGFLTFKNPKCVNEVMSKEHHLDGKIIDPKRAIPR----EEQEKTAKMF 250
Query: 61 VGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNK 120
VGG+P E+EF++FF QFG V + +M D T R RGFGF+T++ E AV+ +++
Sbjct: 251 VGGVPGDCTEEEFRNFFNQFGRVLDATLMMDKDTGRPRGFGFVTYENESAVEATMSQPY- 309
Query: 121 LELAGAQVEVKKAEPK 136
+ + G VEVK+A PK
Sbjct: 310 ITIHGKPVEVKRATPK 325
Score = 172 (65.6 bits), Expect = 3.2e-12, P = 3.2e-12
Identities = 31/80 (38%), Positives = 55/80 (68%)
Query: 58 KIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAK 117
K+F+GG+ +D +D+F QFG+V + +MRD +T RSRGFGF+TF + V+++++K
Sbjct: 164 KMFIGGLNWETTDDSLRDYFEQFGEVLDCTVMRDSTTGRSRGFGFLTFKNPKCVNEVMSK 223
Query: 118 GNKLELAGAQVEVKKAEPKK 137
+ L+ G ++ K+A P++
Sbjct: 224 EHHLD--GKIIDPKRAIPRE 241
Score = 130 (50.8 bits), Expect = 6.6e-07, P = 6.6e-07
Identities = 25/50 (50%), Positives = 35/50 (70%)
Query: 1 MKDRKTGQPRGFGFVTYADPSVVDKVIEDTHI-INGKQVEIKRTIPKGAV 49
M D+ TG+PRGFGFVTY + S V+ + +I I+GK VE+KR PK ++
Sbjct: 279 MMDKDTGRPRGFGFVTYENESAVEATMSQPYITIHGKPVEVKRATPKASL 328
>FB|FBgn0263396 [details] [associations]
symbol:sqd "squid" species:7227 "Drosophila melanogaster"
[GO:0005634 "nucleus" evidence=IC;IDA;TAS] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0005703 "polytene chromosome puff" evidence=IDA]
[GO:0008069 "dorsal/ventral axis specification, ovarian follicular
epithelium" evidence=IMP] [GO:0007297 "ovarian follicle cell
migration" evidence=IMP] [GO:0048477 "oogenesis" evidence=IMP;TAS]
[GO:0008298 "intracellular mRNA localization" evidence=NAS;TAS]
[GO:0017148 "negative regulation of translation" evidence=TAS]
[GO:0003730 "mRNA 3'-UTR binding" evidence=TAS] [GO:0009953
"dorsal/ventral pattern formation" evidence=IMP;TAS] [GO:0006405
"RNA export from nucleus" evidence=TAS] [GO:0030529
"ribonucleoprotein complex" evidence=ISS;NAS] [GO:0003729 "mRNA
binding" evidence=ISS;NAS] [GO:0035062 "omega speckle"
evidence=IDA] [GO:0000785 "chromatin" evidence=IDA] [GO:0005737
"cytoplasm" evidence=TAS] [GO:0000184 "nuclear-transcribed mRNA
catabolic process, nonsense-mediated decay" evidence=TAS]
[GO:0006406 "mRNA export from nucleus" evidence=NAS] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0019094 "pole plasm mRNA localization"
evidence=IMP] [GO:0000381 "regulation of alternative mRNA splicing,
via spliceosome" evidence=IMP] [GO:0030720 "oocyte localization
involved in germarium-derived egg chamber formation" evidence=IMP]
[GO:0016325 "oocyte microtubule cytoskeleton organization"
evidence=IMP] [GO:0007293 "germarium-derived egg chamber formation"
evidence=IMP] [GO:0007314 "oocyte anterior/posterior axis
specification" evidence=IMP] [GO:0045451 "pole plasm oskar mRNA
localization" evidence=IEP] [GO:0071011 "precatalytic spliceosome"
evidence=IDA] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IC] [GO:0071013 "catalytic step 2 spliceosome"
evidence=IDA] [GO:0033119 "negative regulation of RNA splicing"
evidence=IMP] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 EMBL:AE014297 GO:GO:0005737
GO:GO:0000184 GO:GO:0017148 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0000785 GO:GO:0003730 GO:GO:0006406 GO:GO:0033119
GO:GO:0071011 GO:GO:0000398 GO:GO:0071013 GO:GO:0030720
GO:GO:0007297 eggNOG:COG0724 GO:GO:0045451 GO:GO:0005703
GO:GO:0000381 GO:GO:0016325 GO:GO:0008069
GeneTree:ENSGT00700000104255 GO:GO:0035062 EMBL:X62637 EMBL:X62638
EMBL:S61875 EMBL:S62100 EMBL:AY118501 EMBL:BT001384 EMBL:BT003283
EMBL:BT023832 EMBL:S51693 PIR:A47369 PIR:B41732 PIR:B47369
PIR:C48110 RefSeq:NP_001247088.1 RefSeq:NP_652209.1
RefSeq:NP_731825.1 RefSeq:NP_731826.1 RefSeq:NP_996203.1
UniGene:Dm.7189 ProteinModelPortal:Q08473 SMR:Q08473 IntAct:Q08473
MINT:MINT-847475 STRING:Q08473 PaxDb:Q08473
EnsemblMetazoa:FBtr0082855 GeneID:41666 KEGG:dme:Dmel_CG16901
CTD:41666 FlyBase:FBgn0263396 InParanoid:Q08473 KO:K03102
OMA:GDIDSIN OrthoDB:EOG43BK52 PhylomeDB:Q08473 ChiTaRS:sqd
GenomeRNAi:41666 NextBio:824926 Bgee:Q08473 GermOnline:CG16901
Uniprot:Q08473
Length = 344
Score = 264 (98.0 bits), Expect = 6.4e-26, Sum P(2) = 6.4e-26
Identities = 59/138 (42%), Positives = 87/138 (63%)
Query: 3 DRKTGQPRGFGFVTYADPSVVDKV-IEDTHIINGKQVEIKRTIPKGAVGSKDFKTKKIFV 61
D +TG+ RGF F+ + + +DKV D HIIN K+V+ K+ K G KIFV
Sbjct: 90 DPQTGRSRGFAFIVFTNTEAIDKVSAADEHIINSKKVDPKKA--KARHG-------KIFV 140
Query: 62 GGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKL 121
GG+ + ++++E K +F QFG++ E ++ D S+ +GF FITFD+EQ V DLL K K
Sbjct: 141 GGLTTEISDEEIKTYFGQFGNIVEVEMPFDKQKSQRKGFCFITFDSEQVVTDLL-KTPKQ 199
Query: 122 ELAGAQVEVKKAEPKKPN 139
++AG +V+VK+A PK N
Sbjct: 200 KIAGKEVDVKRATPKPEN 217
Score = 144 (55.7 bits), Expect = 3.8e-12, Sum P(2) = 3.8e-12
Identities = 30/89 (33%), Positives = 50/89 (56%)
Query: 48 AVGSKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDT 107
A G +D +K+FVGG+ E E +D F ++G+++ + D T RSRGF FI F
Sbjct: 48 ASGQRD-DDRKLFVGGLSWETTEKELRDHFGKYGEIESINVKTDPQTGRSRGFAFIVFTN 106
Query: 108 EQAVDDLLAKGNKLELAGAQVEVKKAEPK 136
+A+D + A + + +V+ KKA+ +
Sbjct: 107 TEAIDKVSAADEHI-INSKKVDPKKAKAR 134
Score = 44 (20.5 bits), Expect = 6.4e-26, Sum P(2) = 6.4e-26
Identities = 7/12 (58%), Positives = 8/12 (66%)
Query: 231 GYSGRYGGFNRG 242
GY G YGG+ G
Sbjct: 256 GYGGGYGGYGAG 267
Score = 44 (20.5 bits), Expect = 6.4e-26, Sum P(2) = 6.4e-26
Identities = 9/17 (52%), Positives = 11/17 (64%)
Query: 231 GYSGRYGGFNRGYDVTG 247
GY GR GG+N +D G
Sbjct: 237 GYGGR-GGYNNQWDGQG 252
Score = 40 (19.1 bits), Expect = 1.7e-25, Sum P(2) = 1.7e-25
Identities = 8/15 (53%), Positives = 9/15 (60%)
Query: 231 GYSGRY-GGFNRGYD 244
GY Y GG+ GYD
Sbjct: 268 GYGDYYAGGYYNGYD 282
Score = 39 (18.8 bits), Expect = 2.1e-25, Sum P(2) = 2.1e-25
Identities = 7/14 (50%), Positives = 9/14 (64%)
Query: 234 GRYGGFNRGYDVTG 247
G Y G++ GYD G
Sbjct: 276 GYYNGYDYGYDGYG 289
Score = 38 (18.4 bits), Expect = 2.7e-25, Sum P(2) = 2.7e-25
Identities = 6/10 (60%), Positives = 7/10 (70%)
Query: 234 GRYGGFNRGY 243
G YGG+ GY
Sbjct: 252 GSYGGYGGGY 261
>WB|WBGene00003423 [details] [associations]
symbol:msi-1 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IDA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005737
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 KO:K14411
GeneTree:ENSGT00700000104255 HSSP:Q61474 EMBL:Z35601 EMBL:AB036738
PIR:T24148 RefSeq:NP_497799.1 UniGene:Cel.19474
ProteinModelPortal:G5EFS2 SMR:G5EFS2 EnsemblMetazoa:R10E9.1.1
EnsemblMetazoa:R10E9.1.2 GeneID:175514 KEGG:cel:CELE_R10E9.1
CTD:175514 WormBase:R10E9.1 OMA:VADKVCE NextBio:888480
Uniprot:G5EFS2
Length = 320
Score = 293 (108.2 bits), Expect = 6.6e-26, P = 6.6e-26
Identities = 58/142 (40%), Positives = 92/142 (64%)
Query: 1 MKDRKTGQPRGFGFVTYADPSVVDKVIEDT-HIINGKQVEIKRTIPKGAVGSKDFKTKKI 59
M+D T + RGFGF+T+ DPS VDKV+ + H ++GK+++ K PK KTKK+
Sbjct: 77 MRDPATKRARGFGFITFVDPSSVDKVLNNREHELDGKKIDPKVAFPKRTQAKLVTKTKKV 136
Query: 60 FVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGN 119
F+GG+ ++ ++ K +F +G V++ +M D +T R RGFGF+TFD+++ V D + + +
Sbjct: 137 FIGGLSATSTLEDMKQYFETYGKVEDAMLMFDKATQRHRGFGFVTFDSDE-VADKVCEIH 195
Query: 120 KLELAGAQVEVKKAEPKKPNLP 141
E+ G VE KKA+PK+ LP
Sbjct: 196 FHEINGKMVECKKAQPKEVMLP 217
Score = 174 (66.3 bits), Expect = 6.8e-13, P = 6.8e-13
Identities = 37/91 (40%), Positives = 57/91 (62%)
Query: 47 GAVGSKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFD 106
G+ GS+D K+F+GG+ + +D+F +FG+V E +MRD +T R+RGFGFITF
Sbjct: 37 GSHGSQD--PGKMFIGGLSWQTTAENLRDYFGRFGEVNECMVMRDPATKRARGFGFITFV 94
Query: 107 TEQAVDDLLAKGNKLELAGAQVEVKKAEPKK 137
+VD +L + EL G +++ K A PK+
Sbjct: 95 DPSSVDKVL-NNREHELDGKKIDPKVAFPKR 124
>UNIPROTKB|Q96DH6 [details] [associations]
symbol:MSI2 "RNA-binding protein Musashi homolog 2"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005844 "polysome" evidence=IEA] [GO:0008266
"poly(U) RNA binding" evidence=IEA] [GO:0048864 "stem cell
development" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 eggNOG:COG0724 HOGENOM:HOG000234441
HOVERGEN:HBG002295 KO:K14411 OrthoDB:EOG48GW3J EMBL:BC001526
EMBL:BC017560 EMBL:AK093888 IPI:IPI00073713 IPI:IPI00167806
IPI:IPI00455161 RefSeq:NP_620412.1 RefSeq:NP_733839.1
UniGene:Hs.658922 ProteinModelPortal:Q96DH6 SMR:Q96DH6
IntAct:Q96DH6 STRING:Q96DH6 PhosphoSite:Q96DH6 DMDM:51316513
PaxDb:Q96DH6 PRIDE:Q96DH6 DNASU:124540 Ensembl:ENST00000284073
Ensembl:ENST00000322684 Ensembl:ENST00000579180 GeneID:124540
KEGG:hsa:124540 UCSC:uc002iuz.1 UCSC:uc002iva.3 CTD:124540
GeneCards:GC17P055334 HGNC:HGNC:18585 HPA:CAB022300 MIM:607897
neXtProt:NX_Q96DH6 PharmGKB:PA38590 InParanoid:Q96DH6 OMA:ISDCTIM
PhylomeDB:Q96DH6 ChiTaRS:MSI2 GenomeRNAi:124540 NextBio:81316
ArrayExpress:Q96DH6 Bgee:Q96DH6 CleanEx:HS_MSI2
Genevestigator:Q96DH6 GermOnline:ENSG00000153944 Uniprot:Q96DH6
Length = 328
Score = 280 (103.6 bits), Expect = 1.6e-24, P = 1.6e-24
Identities = 60/147 (40%), Positives = 92/147 (62%)
Query: 1 MKDRKTGQPRGFGFVTYADPSVVDKVI-EDTHIINGKQVEIKRTIPKGAVGSKDFKTKKI 59
M+D T + RGFGFVT+ADP+ VDKV+ + H ++ K ++ K P+ A +TKKI
Sbjct: 53 MRDPTTKRSRGFGFVTFADPASVDKVLGQPHHELDSKTIDPKVAFPRRAQPKMVTRTKKI 112
Query: 60 FVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGN 119
FVGG+ ++ ++ K +F QFG V++ +M D +T+R RGFGF+TF+ E V+ + + +
Sbjct: 113 FVGGLSANTVVEDVKQYFEQFGKVEDAMLMFDKTTNRHRGFGFVTFENEDVVEKV-CEIH 171
Query: 120 KLELAGAQVEVKKAEPKKPNLPQPSYR 146
E+ VE KKA+PK+ P P R
Sbjct: 172 FHEINNKMVECKKAQPKEVMFP-PGTR 197
Score = 168 (64.2 bits), Expect = 3.5e-12, P = 3.5e-12
Identities = 32/91 (35%), Positives = 54/91 (59%)
Query: 47 GAVGSKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFD 106
G+ K+F+GG+ + D +D+F +FG+++E +MRD +T RSRGFGF+TF
Sbjct: 11 GSANDSQHDPGKMFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRSRGFGFVTFA 70
Query: 107 TEQAVDDLLAKGNKLELAGAQVEVKKAEPKK 137
+VD +L + + EL ++ K A P++
Sbjct: 71 DPASVDKVLGQPHH-ELDSKTIDPKVAFPRR 100
>MGI|MGI:1923876 [details] [associations]
symbol:Msi2 "musashi RNA-binding protein 2" species:10090
"Mus musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0003727 "single-stranded RNA binding"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0005844
"polysome" evidence=IDA] [GO:0008266 "poly(U) RNA binding"
evidence=IDA] [GO:0048864 "stem cell development" evidence=IMP]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 MGI:MGI:1923876 GO:GO:0005737 GO:GO:0008266
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0005844 eggNOG:COG0724
HOGENOM:HOG000234441 HOVERGEN:HBG002295 KO:K14411
GeneTree:ENSGT00700000104255 GO:GO:0048864 CTD:124540 ChiTaRS:MSI2
EMBL:AB056102 EMBL:AB056103 EMBL:BK001483 EMBL:AK049637
EMBL:AK049688 EMBL:AK051269 IPI:IPI00120924 IPI:IPI00462899
IPI:IPI00462900 RefSeq:NP_473384.1 UniGene:Mm.400451
UniGene:Mm.428433 UniGene:Mm.474737 ProteinModelPortal:Q920Q6
SMR:Q920Q6 STRING:Q920Q6 PhosphoSite:Q920Q6 PaxDb:Q920Q6
PRIDE:Q920Q6 Ensembl:ENSMUST00000092794 Ensembl:ENSMUST00000107909
GeneID:76626 KEGG:mmu:76626 UCSC:uc007kvn.2 InParanoid:Q920Q6
OMA:ENYISAA NextBio:345476 Bgee:Q920Q6 CleanEx:MM_MSI2
Genevestigator:Q920Q6 GermOnline:ENSMUSG00000069769 Uniprot:Q920Q6
Length = 346
Score = 280 (103.6 bits), Expect = 1.6e-24, P = 1.6e-24
Identities = 60/147 (40%), Positives = 92/147 (62%)
Query: 1 MKDRKTGQPRGFGFVTYADPSVVDKVI-EDTHIINGKQVEIKRTIPKGAVGSKDFKTKKI 59
M+D T + RGFGFVT+ADP+ VDKV+ + H ++ K ++ K P+ A +TKKI
Sbjct: 53 MRDPTTKRSRGFGFVTFADPASVDKVLGQPHHELDSKTIDPKVAFPRRAQPKMVTRTKKI 112
Query: 60 FVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGN 119
FVGG+ ++ ++ K +F QFG V++ +M D +T+R RGFGF+TF+ E V+ + + +
Sbjct: 113 FVGGLSANTVVEDVKQYFEQFGKVEDAMLMFDKTTNRHRGFGFVTFENEDVVEKV-CEIH 171
Query: 120 KLELAGAQVEVKKAEPKKPNLPQPSYR 146
E+ VE KKA+PK+ P P R
Sbjct: 172 FHEINNKMVECKKAQPKEVMFP-PGTR 197
Score = 168 (64.2 bits), Expect = 4.1e-12, P = 4.1e-12
Identities = 32/91 (35%), Positives = 54/91 (59%)
Query: 47 GAVGSKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFD 106
G+ K+F+GG+ + D +D+F +FG+++E +MRD +T RSRGFGF+TF
Sbjct: 11 GSANDSQHDPGKMFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRSRGFGFVTFA 70
Query: 107 TEQAVDDLLAKGNKLELAGAQVEVKKAEPKK 137
+VD +L + + EL ++ K A P++
Sbjct: 71 DPASVDKVLGQPHH-ELDSKTIDPKVAFPRR 100
>UNIPROTKB|B4DHE8 [details] [associations]
symbol:MSI2 "RNA-binding protein Musashi homolog 2"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
HOGENOM:HOG000234441 HOVERGEN:HBG002295 UniGene:Hs.658922
HGNC:HGNC:18585 ChiTaRS:MSI2 EMBL:AC005325 EMBL:AC007431
EMBL:AC015883 EMBL:AC091181 EMBL:AK295060 IPI:IPI00910884
SMR:B4DHE8 STRING:B4DHE8 Ensembl:ENST00000416426 UCSC:uc010wnm.1
Uniprot:B4DHE8
Length = 324
Score = 280 (103.6 bits), Expect = 1.6e-24, P = 1.6e-24
Identities = 60/147 (40%), Positives = 92/147 (62%)
Query: 1 MKDRKTGQPRGFGFVTYADPSVVDKVI-EDTHIINGKQVEIKRTIPKGAVGSKDFKTKKI 59
M+D T + RGFGFVT+ADP+ VDKV+ + H ++ K ++ K P+ A +TKKI
Sbjct: 31 MRDPTTKRSRGFGFVTFADPASVDKVLGQPHHELDSKTIDPKVAFPRRAQPKMVTRTKKI 90
Query: 60 FVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGN 119
FVGG+ ++ ++ K +F QFG V++ +M D +T+R RGFGF+TF+ E V+ + + +
Sbjct: 91 FVGGLSANTVVEDVKQYFEQFGKVEDAMLMFDKTTNRHRGFGFVTFENEDVVEKV-CEIH 149
Query: 120 KLELAGAQVEVKKAEPKKPNLPQPSYR 146
E+ VE KKA+PK+ P P R
Sbjct: 150 FHEINNKMVECKKAQPKEVMFP-PGTR 175
Score = 161 (61.7 bits), Expect = 2.0e-11, P = 2.0e-11
Identities = 30/79 (37%), Positives = 51/79 (64%)
Query: 59 IFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKG 118
+F+GG+ + D +D+F +FG+++E +MRD +T RSRGFGF+TF +VD +L +
Sbjct: 1 MFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRSRGFGFVTFADPASVDKVLGQP 60
Query: 119 NKLELAGAQVEVKKAEPKK 137
+ EL ++ K A P++
Sbjct: 61 HH-ELDSKTIDPKVAFPRR 78
>ZFIN|ZDB-GENE-070212-1 [details] [associations]
symbol:dazap1 "DAZ associated protein 1" species:7955
"Danio rerio" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-070212-1 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 OMA:HNLDGRN GeneTree:ENSGT00700000104255
EMBL:BX255969 EMBL:BX323045 IPI:IPI00961610
Ensembl:ENSDART00000104362 Bgee:F1QBG2 Uniprot:F1QBG2
Length = 407
Score = 280 (103.6 bits), Expect = 1.6e-24, P = 1.6e-24
Identities = 66/157 (42%), Positives = 92/157 (58%)
Query: 1 MKDRKTGQPRGFGFVTYADPSVVDKVIEDT-HIINGKQVEIKRTIPKGAV---------- 49
MKD+ T Q RGFGFV + DP+ V V++ H ++G+ ++ K P+G
Sbjct: 43 MKDKSTNQSRGFGFVKFKDPNCVRTVLDTKPHNLDGRNIDPKPCTPRGMQPEKTRTKDGW 102
Query: 50 -GSKDF--KTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFD 106
GSK K+KKIFVGGIP + E E +D+F +FG V E ++ D R RGFGFITF+
Sbjct: 103 KGSKSDSNKSKKIFVGGIPHNCGEAELRDYFNRFGVVTEVVMIYDAEKQRPRGFGFITFE 162
Query: 107 TEQAVDDLLAKGNKLELAGAQVEVKKAEPKKPNLPQP 143
EQ+VD + + ++ G +VEVKKAEP+ P P
Sbjct: 163 AEQSVDQAVNM-HFHDIMGKKVEVKKAEPRDSKAPAP 198
Score = 141 (54.7 bits), Expect = 5.4e-09, P = 5.4e-09
Identities = 29/80 (36%), Positives = 49/80 (61%)
Query: 58 KIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLL-A 116
K+FVGG+ S ++ +++F Q+G+V + IM+D ST++SRGFGF+ F V +L
Sbjct: 12 KLFVGGLDWSTTQETLRNYFSQYGEVVDCVIMKDKSTNQSRGFGFVKFKDPNCVRTVLDT 71
Query: 117 KGNKLELAGAQVEVKKAEPK 136
K + L+ G ++ K P+
Sbjct: 72 KPHNLD--GRNIDPKPCTPR 89
>FB|FBgn0001215 [details] [associations]
symbol:Hrb98DE "Heterogeneous nuclear ribonucleoprotein at
98DE" species:7227 "Drosophila melanogaster" [GO:0030529
"ribonucleoprotein complex" evidence=ISS;NAS;IDA;IPI] [GO:0003729
"mRNA binding" evidence=ISS;NAS] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0001745 "compound eye morphogenesis"
evidence=IGI] [GO:0043565 "sequence-specific DNA binding"
evidence=IDA] [GO:0000381 "regulation of alternative mRNA splicing,
via spliceosome" evidence=IMP] [GO:0005703 "polytene chromosome
puff" evidence=IDA] [GO:0033119 "negative regulation of RNA
splicing" evidence=IMP] [GO:0005634 "nucleus" evidence=IDA]
[GO:0045727 "positive regulation of translation" evidence=IMP]
[GO:0048477 "oogenesis" evidence=IMP] [GO:0036099 "female germ-line
stem cell maintenance" evidence=IMP] [GO:0048027 "mRNA 5'-UTR
binding" evidence=IDA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 EMBL:AE014297
GO:GO:0005634 GO:GO:0000166 GO:GO:0043565 Gene3D:3.30.70.330
GO:GO:0048477 GO:GO:0048027 GO:GO:0030529 GO:GO:0033119
GO:GO:0045727 eggNOG:COG0724 GO:GO:0005703 GO:GO:0000381
GeneTree:ENSGT00700000104255 GO:GO:0036099 KO:K12741
OrthoDB:EOG46WWRF EMBL:M15766 EMBL:M25545 EMBL:M28871 EMBL:M28872
EMBL:M33955 EMBL:M31560 EMBL:M28870 EMBL:AY061448 PIR:A26459
RefSeq:NP_524543.1 RefSeq:NP_733249.1 RefSeq:NP_733250.1
RefSeq:NP_733251.1 RefSeq:NP_733252.1 RefSeq:NP_733253.1
UniGene:Dm.7147 ProteinModelPortal:P07909 SMR:P07909 DIP:DIP-19217N
IntAct:P07909 MINT:MINT-764040 STRING:P07909 PaxDb:P07909
PRIDE:P07909 EnsemblMetazoa:FBtr0085300 EnsemblMetazoa:FBtr0085301
GeneID:43385 KEGG:dme:Dmel_CG9983 CTD:43385 FlyBase:FBgn0001215
InParanoid:P07909 OMA:INIVIDK PhylomeDB:P07909 ChiTaRS:Hrb98DE
GenomeRNAi:43385 NextBio:833644 Bgee:P07909 GermOnline:CG9983
Uniprot:P07909
Length = 365
Score = 249 (92.7 bits), Expect = 1.9e-24, Sum P(2) = 1.9e-24
Identities = 52/140 (37%), Positives = 84/140 (60%)
Query: 1 MKDRKTGQPRGFGFVTYADPSVVDKVIEDT-HIINGKQVEIKRTIPKGAVGSKDF--KTK 57
MKD +T + RGFGF+TY+ S++D+ + H I+G+ VE KR +P+ + S + K
Sbjct: 63 MKDPRTKRSRGFGFITYSHSSMIDEAQKSRPHKIDGRVVEPKRAVPRQDIDSPNAGATVK 122
Query: 58 KIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAK 117
K+FVG + +E +D+F FG++ + I+ D T + RGF F+ FD VD ++ +
Sbjct: 123 KLFVGALKDDHDEQSIRDYFQHFGNIVDINIVIDKETGKKRGFAFVEFDDYDPVDKVVLQ 182
Query: 118 GNKLELAGAQVEVKKAEPKK 137
+ +L G V+VKKA PK+
Sbjct: 183 -KQHQLNGKMVDVKKALPKQ 201
Score = 142 (55.0 bits), Expect = 6.5e-12, Sum P(2) = 6.5e-12
Identities = 28/88 (31%), Positives = 52/88 (59%)
Query: 57 KKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLA 116
+K+F+GG+ ++ K F ++G++ + +M+D T RSRGFGFIT+ +D+
Sbjct: 31 RKLFIGGLDYRTTDENLKAHFEKWGNIVDVVVMKDPRTKRSRGFGFITYSHSSMIDEA-Q 89
Query: 117 KGNKLELAGAQVEVKKAEPKKPNLPQPS 144
K ++ G VE K+A P++ ++ P+
Sbjct: 90 KSRPHKIDGRVVEPKRAVPRQ-DIDSPN 116
Score = 45 (20.9 bits), Expect = 1.9e-24, Sum P(2) = 1.9e-24
Identities = 8/18 (44%), Positives = 12/18 (66%)
Query: 231 GYSGRYGGFNRGYDVTGD 248
G G YGG N+G++ G+
Sbjct: 344 GNQGNYGGNNQGFNNGGN 361
>ZFIN|ZDB-GENE-030826-25 [details] [associations]
symbol:msi2a "musashi homolog 2a (Drosophila)"
species:7955 "Danio rerio" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-030826-25 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724
HOGENOM:HOG000234441 HOVERGEN:HBG002295 KO:K14411
GeneTree:ENSGT00700000104255 OrthoDB:EOG48GW3J HSSP:Q61474
EMBL:CR931799 EMBL:CR931806 EMBL:BC045335 IPI:IPI00489753
RefSeq:NP_997961.1 UniGene:Dr.32677 SMR:Q7ZW10
Ensembl:ENSDART00000099473 Ensembl:ENSDART00000132096
GeneID:100002680 KEGG:dre:100002680 CTD:100002680 InParanoid:Q7ZW10
OMA:MEADASQ NextBio:20785547 Uniprot:Q7ZW10
Length = 388
Score = 275 (101.9 bits), Expect = 5.3e-24, P = 5.3e-24
Identities = 60/147 (40%), Positives = 91/147 (61%)
Query: 1 MKDRKTGQPRGFGFVTYADPSVVDKVI-EDTHIINGKQVEIKRTIPKGAVGSKDFKTKKI 59
M+D T + RGFGF+T+AD S VDKV+ + H ++ K ++ K P+ A +TKKI
Sbjct: 53 MRDPTTKRSRGFGFITFADVSSVDKVLAQPHHELDSKTIDPKVAFPRRAQPKMVTRTKKI 112
Query: 60 FVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGN 119
FVGG+ +S ++ K +F QFG V++ +M D +T+R RGFGF+TF+ E V+ + + +
Sbjct: 113 FVGGLSASTVVEDVKQYFEQFGKVEDAMLMFDKTTNRHRGFGFVTFENEDIVEKV-CEIH 171
Query: 120 KLELAGAQVEVKKAEPKKPNLPQPSYR 146
E+ VE KKA+PK+ P P R
Sbjct: 172 FHEINNKMVECKKAQPKEVMFP-PGTR 197
Score = 176 (67.0 bits), Expect = 7.4e-13, P = 7.4e-13
Identities = 34/94 (36%), Positives = 57/94 (60%)
Query: 44 IPKGAVGSKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFI 103
+ G++ K+F+GG+ + D +D+F +FG+++E +MRD +T RSRGFGFI
Sbjct: 8 VTSGSLNDSQHDPGKMFIGGLSWQTSPDSLRDYFCKFGEIRECMVMRDPTTKRSRGFGFI 67
Query: 104 TFDTEQAVDDLLAKGNKLELAGAQVEVKKAEPKK 137
TF +VD +LA+ + EL ++ K A P++
Sbjct: 68 TFADVSSVDKVLAQPHH-ELDSKTIDPKVAFPRR 100
>UNIPROTKB|J9P972 [details] [associations]
symbol:DAZAP1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104255 EMBL:AAEX03012650 EMBL:AAEX03012651
Ensembl:ENSCAFT00000049246 Uniprot:J9P972
Length = 258
Score = 274 (101.5 bits), Expect = 6.8e-24, P = 6.8e-24
Identities = 62/154 (40%), Positives = 94/154 (61%)
Query: 1 MKDRKTGQPRGFGFVTYADPSVVDKVIEDT-HIINGKQVEIKRTIPKGAVGSKDFKTKKI 59
MKD+ T Q RGFGFV + DP+ V V+ H ++G+ ++ K+ P+ S + K+ KI
Sbjct: 87 MKDKTTNQSRGFGFVKFKDPNCVGTVLASRPHTLDGRNIDPKQKGPR----SDNSKSNKI 142
Query: 60 FVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGN 119
FVGGIP + E E +++F +FG V E ++ D R RGFGFITF+ EQ+VD + +
Sbjct: 143 FVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVNM-H 201
Query: 120 KLELAGAQVEVKKAEPK--KPNLP-QPSYRRYNN 150
++ G +VEVK+AEP+ K P QP ++ +
Sbjct: 202 FHDIMGKKVEVKRAEPRDSKSQAPGQPGASQWGS 235
Score = 147 (56.8 bits), Expect = 3.4e-10, P = 3.4e-10
Identities = 29/83 (34%), Positives = 49/83 (59%)
Query: 57 KKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLA 116
+K+FVGG+ S ++ + +F Q+G+V + IM+D +T++SRGFGF+ F V +LA
Sbjct: 55 RKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLA 114
Query: 117 KGNKLELAGAQVEVKKAEPKKPN 139
L G ++ K+ P+ N
Sbjct: 115 S-RPHTLDGRNIDPKQKGPRSDN 136
>FB|FBgn0011666 [details] [associations]
symbol:msi "musashi" species:7227 "Drosophila melanogaster"
[GO:0005634 "nucleus" evidence=IDA] [GO:0022416 "chaeta
development" evidence=IMP] [GO:0003723 "RNA binding" evidence=ISM]
[GO:0003729 "mRNA binding" evidence=ISS;NAS;TAS] [GO:0006397 "mRNA
processing" evidence=ISS] [GO:0017148 "negative regulation of
translation" evidence=IMP;TAS] [GO:0006417 "regulation of
translation" evidence=TAS] [GO:0045182 "translation regulator
activity" evidence=TAS] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0001709 "cell fate determination" evidence=TAS]
[GO:0000900 "translation repressor activity, nucleic acid binding"
evidence=TAS] [GO:0019827 "stem cell maintenance" evidence=IMP]
[GO:0042078 "germ-line stem cell division" evidence=IMP]
[GO:0071456 "cellular response to hypoxia" evidence=IMP]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 EMBL:AE014297 GO:GO:0005634 GO:GO:0000166
GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0071456 GO:GO:0022416
GO:GO:0001709 GO:GO:0019827 GO:GO:0000900 GO:GO:0042078 KO:K14411
GeneTree:ENSGT00700000104255 HSSP:Q61474 ChiTaRS:msi
FlyBase:FBgn0011666 EMBL:BT133366 RefSeq:NP_001247303.1
RefSeq:NP_733108.2 UniGene:Dm.1334 SMR:Q8IMS8 MINT:MINT-296706
STRING:Q8IMS8 EnsemblMetazoa:FBtr0084881 EnsemblMetazoa:FBtr0305218
EnsemblMetazoa:FBtr0333664 GeneID:43087 KEGG:dme:Dmel_CG5099
UCSC:CG5099-RB CTD:43087 InParanoid:Q8IMS8 OMA:PIKAFAC
GenomeRNAi:43087 NextBio:832139 Uniprot:Q8IMS8
Length = 634
Score = 281 (104.0 bits), Expect = 9.4e-24, P = 9.4e-24
Identities = 58/142 (40%), Positives = 87/142 (61%)
Query: 1 MKDRKTGQPRGFGFVTYADPSVVDKVIE-DTHIINGKQVEIKRTIPKGAVGSKDFKTKKI 59
MKD T + RGFGF+T+ +P V+KV++ H ++GK+++ K PK + KTKKI
Sbjct: 235 MKDPVTQRSRGFGFITFQEPCTVEKVLKVPIHTLDGKKIDPKHATPKNRPRQAN-KTKKI 293
Query: 60 FVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGN 119
FVGG+ + +E K +F QFG V+E ++ D T R RGFGF+TF+ E VD + + +
Sbjct: 294 FVGGVSQDTSAEEVKAYFSQFGPVEETVMLMDQQTKRHRGFGFVTFENEDVVDRV-CEIH 352
Query: 120 KLELAGAQVEVKKAEPKKPNLP 141
+ +VE KKA+PK+ P
Sbjct: 353 FHTIKNKKVECKKAQPKEAVTP 374
Score = 156 (60.0 bits), Expect = 2.7e-10, P = 2.7e-10
Identities = 41/102 (40%), Positives = 57/102 (55%)
Query: 42 RTIPKGAVGS-KDFKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGF 100
R+ P + GS D K+FVGG+ + D+ K++F FG V + IM+D T RSRGF
Sbjct: 187 RSTPSLSGGSGSDPAPGKLFVGGLSWQTSSDKLKEYFNMFGTVTDVLIMKDPVTQRSRGF 246
Query: 101 GFITFDTEQAVDDLLAKGNKLELAGAQVEVKKAEPKKPNLPQ 142
GFITF V+ +L K L G +++ K A PK N P+
Sbjct: 247 GFITFQEPCTVEKVL-KVPIHTLDGKKIDPKHATPK--NRPR 285
>ZFIN|ZDB-GENE-040426-1268 [details] [associations]
symbol:msi2b "musashi homolog 2b (Drosophila)"
species:7955 "Danio rerio" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-040426-1268 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724
HOGENOM:HOG000234441 HOVERGEN:HBG002295 KO:K14411
GeneTree:ENSGT00700000104255 HSSP:Q61474 EMBL:BX000438
EMBL:BX510988 EMBL:BX649247 EMBL:CR848815 EMBL:BC055251
IPI:IPI00481779 RefSeq:NP_957403.1 UniGene:Dr.82489 SMR:Q7SXT6
STRING:Q7SXT6 Ensembl:ENSDART00000100194 GeneID:394084
KEGG:dre:394084 CTD:394084 InParanoid:Q7SXT6 OMA:NYISASP
NextBio:20815041 Uniprot:Q7SXT6
Length = 408
Score = 272 (100.8 bits), Expect = 1.3e-23, P = 1.3e-23
Identities = 59/147 (40%), Positives = 91/147 (61%)
Query: 1 MKDRKTGQPRGFGFVTYADPSVVDKVI-EDTHIINGKQVEIKRTIPKGAVGSKDFKTKKI 59
M+D T + RGFGFVT+AD + VDKV+ + H ++ K ++ K P+ A +TKKI
Sbjct: 53 MRDPTTKRSRGFGFVTFADAASVDKVLAQPHHELDSKTIDPKVAFPRRAQPKMVTRTKKI 112
Query: 60 FVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGN 119
FVGG+ ++ ++ K +F QFG V++ +M D +T+R RGFGF+TF+ E V+ + + +
Sbjct: 113 FVGGLSANTVVEDVKQYFEQFGKVEDAMLMFDKTTNRHRGFGFVTFENEDVVEKV-CEIH 171
Query: 120 KLELAGAQVEVKKAEPKKPNLPQPSYR 146
E+ VE KKA+PK+ P P R
Sbjct: 172 FHEINNKMVECKKAQPKEVMFP-PGTR 197
Score = 170 (64.9 bits), Expect = 3.8e-12, P = 3.8e-12
Identities = 32/80 (40%), Positives = 53/80 (66%)
Query: 58 KIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAK 117
K+F+GG+ + D +D+F +FG+++E +MRD +T RSRGFGF+TF +VD +LA+
Sbjct: 22 KMFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRSRGFGFVTFADAASVDKVLAQ 81
Query: 118 GNKLELAGAQVEVKKAEPKK 137
+ EL ++ K A P++
Sbjct: 82 PHH-ELDSKTIDPKVAFPRR 100
>ZFIN|ZDB-GENE-050320-86 [details] [associations]
symbol:msi1 "musashi homolog 1 (Drosophila)"
species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005575 "cellular_component" evidence=ND] [GO:0007417 "central
nervous system development" evidence=IMP] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-050320-86 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0007417 GO:GO:0003676 EMBL:AB698464 Uniprot:J4C3V8
Length = 349
Score = 267 (99.0 bits), Expect = 3.8e-23, P = 3.8e-23
Identities = 59/147 (40%), Positives = 88/147 (59%)
Query: 1 MKDRKTGQPRGFGFVTYADPSVVDKVIEDT-HIINGKQVEIKRTIPKGAVGSKDFKTKKI 59
M+D T + RGFGFVT+ D + VDKV+ T H ++ K ++ K P+ A +TKKI
Sbjct: 52 MRDPVTKRSRGFGFVTFVDQAGVDKVLAQTRHELDSKTIDPKVAFPRRAQPKLVTRTKKI 111
Query: 60 FVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGN 119
FVGG+ + ++ K +F QFG V + +M D +T+R RGFGF+TF+ E V+ + + +
Sbjct: 112 FVGGLSVNTTIEDVKQYFDQFGKVDDAMLMFDKTTNRHRGFGFVTFENEDVVEKV-CEIH 170
Query: 120 KLELAGAQVEVKKAEPKKPNLPQPSYR 146
E+ VE KKA+PK+ P S R
Sbjct: 171 FHEINNKMVECKKAQPKEVMSPTGSSR 197
Score = 171 (65.3 bits), Expect = 2.0e-12, P = 2.0e-12
Identities = 33/80 (41%), Positives = 52/80 (65%)
Query: 58 KIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAK 117
K+F+GG+ ++ KD+F +FG+V+E +MRD T RSRGFGF+TF + VD +LA+
Sbjct: 21 KMFIGGLSWQTTQEGLKDYFCKFGEVKESMVMRDPVTKRSRGFGFVTFVDQAGVDKVLAQ 80
Query: 118 GNKLELAGAQVEVKKAEPKK 137
+ EL ++ K A P++
Sbjct: 81 -TRHELDSKTIDPKVAFPRR 99
>UNIPROTKB|F1MS42 [details] [associations]
symbol:MSI1 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0008266 "poly(U) RNA binding" evidence=IEA] [GO:0005844
"polysome" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0005737 GO:GO:0008266 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0005844 GeneTree:ENSGT00700000104255 OMA:GLPGSHP
EMBL:DAAA02045450 EMBL:DAAA02045451 IPI:IPI00718423
Ensembl:ENSBTAT00000012926 Uniprot:F1MS42
Length = 342
Score = 267 (99.0 bits), Expect = 3.8e-23, P = 3.8e-23
Identities = 59/154 (38%), Positives = 91/154 (59%)
Query: 1 MKDRKTGQPRGFGFVTYADPSVVDKVI-EDTHIINGKQVEIKRTIPKGAVGSKDFKTKKI 59
M+D T + RGFGFVT+ D + VDKV+ + H ++ K ++ K P+ A +TKKI
Sbjct: 32 MRDPLTKRSRGFGFVTFMDQAGVDKVLAQSRHELDSKTIDPKVAFPRRAQPKMVTRTKKI 91
Query: 60 FVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGN 119
FVGG+ + ++ K +F QFG V + +M D +T+R RGFGF+TF++E V+ + + +
Sbjct: 92 FVGGLSVNTTVEDVKQYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKV-CEIH 150
Query: 120 KLELAGAQVEVKKAEPKKPNLPQPSYRRYNNPKP 153
E+ VE KKA+PK+ P S R + P
Sbjct: 151 FHEINNKMVECKKAQPKEVMSPTGSARGRSRVMP 184
Score = 163 (62.4 bits), Expect = 1.4e-11, P = 1.4e-11
Identities = 32/80 (40%), Positives = 53/80 (66%)
Query: 58 KIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAK 117
K+F+GG+ ++ +++F QFG+V+E +MRD T RSRGFGF+TF + VD +LA+
Sbjct: 1 KMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQ 60
Query: 118 GNKLELAGAQVEVKKAEPKK 137
++ EL ++ K A P++
Sbjct: 61 -SRHELDSKTIDPKVAFPRR 79
>UNIPROTKB|O43347 [details] [associations]
symbol:MSI1 "RNA-binding protein Musashi homolog 1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005844 "polysome" evidence=IEA] [GO:0008266
"poly(U) RNA binding" evidence=IEA] [GO:0009725 "response to
hormone stimulus" evidence=IEA] [GO:0030855 "epithelial cell
differentiation" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0003723 "RNA binding"
evidence=TAS] [GO:0007399 "nervous system development"
evidence=TAS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0005737
GO:GO:0007399 GO:GO:0008266 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0009725 GO:GO:0005844 GO:GO:0030855
eggNOG:COG0724 HOGENOM:HOG000234441 HOVERGEN:HBG002295 KO:K14411
EMBL:AB012851 EMBL:AC003982 EMBL:AB072590 EMBL:AB072591
EMBL:AB072592 EMBL:AB073212 IPI:IPI00001007 RefSeq:NP_002433.1
UniGene:Hs.158311 ProteinModelPortal:O43347 SMR:O43347
IntAct:O43347 MINT:MINT-1432501 STRING:O43347 PhosphoSite:O43347
PaxDb:O43347 PRIDE:O43347 DNASU:4440 Ensembl:ENST00000257552
GeneID:4440 KEGG:hsa:4440 UCSC:uc001tye.1 CTD:4440
GeneCards:GC12M120779 HGNC:HGNC:7330 HPA:CAB022337 MIM:603328
neXtProt:NX_O43347 PharmGKB:PA31137 InParanoid:O43347 OMA:GLPGSHP
OrthoDB:EOG48GW3J GenomeRNAi:4440 NextBio:17313 ArrayExpress:O43347
Bgee:O43347 CleanEx:HS_MSI1 Genevestigator:O43347
GermOnline:ENSG00000135097 Uniprot:O43347
Length = 362
Score = 267 (99.0 bits), Expect = 3.8e-23, P = 3.8e-23
Identities = 59/154 (38%), Positives = 91/154 (59%)
Query: 1 MKDRKTGQPRGFGFVTYADPSVVDKVI-EDTHIINGKQVEIKRTIPKGAVGSKDFKTKKI 59
M+D T + RGFGFVT+ D + VDKV+ + H ++ K ++ K P+ A +TKKI
Sbjct: 52 MRDPLTKRSRGFGFVTFMDQAGVDKVLAQSRHELDSKTIDPKVAFPRRAQPKMVTRTKKI 111
Query: 60 FVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGN 119
FVGG+ + ++ K +F QFG V + +M D +T+R RGFGF+TF++E V+ + + +
Sbjct: 112 FVGGLSVNTTVEDVKQYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKV-CEIH 170
Query: 120 KLELAGAQVEVKKAEPKKPNLPQPSYRRYNNPKP 153
E+ VE KKA+PK+ P S R + P
Sbjct: 171 FHEINNKMVECKKAQPKEVMSPTGSARGRSRVMP 204
Score = 163 (62.4 bits), Expect = 1.7e-11, P = 1.7e-11
Identities = 32/80 (40%), Positives = 53/80 (66%)
Query: 58 KIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAK 117
K+F+GG+ ++ +++F QFG+V+E +MRD T RSRGFGF+TF + VD +LA+
Sbjct: 21 KMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQ 80
Query: 118 GNKLELAGAQVEVKKAEPKK 137
++ EL ++ K A P++
Sbjct: 81 -SRHELDSKTIDPKVAFPRR 99
>UNIPROTKB|I3LPG0 [details] [associations]
symbol:MSI1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0008266 "poly(U) RNA binding" evidence=IEA] [GO:0005844
"polysome" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0005737 GO:GO:0008266 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0005844 GeneTree:ENSGT00700000104255 OMA:GLPGSHP
EMBL:FP690339 Ensembl:ENSSSCT00000027694 Uniprot:I3LPG0
Length = 332
Score = 267 (99.0 bits), Expect = 3.8e-23, P = 3.8e-23
Identities = 59/154 (38%), Positives = 91/154 (59%)
Query: 1 MKDRKTGQPRGFGFVTYADPSVVDKVI-EDTHIINGKQVEIKRTIPKGAVGSKDFKTKKI 59
M+D T + RGFGFVT+ D + VDKV+ + H ++ K ++ K P+ A +TKKI
Sbjct: 19 MRDPLTKRSRGFGFVTFMDQAGVDKVLAQSRHELDSKTIDPKVAFPRRAQPKMVTRTKKI 78
Query: 60 FVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGN 119
FVGG+ + ++ K +F QFG V + +M D +T+R RGFGF+TF++E V+ + + +
Sbjct: 79 FVGGLSVNTTVEDVKQYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKV-CEIH 137
Query: 120 KLELAGAQVEVKKAEPKKPNLPQPSYRRYNNPKP 153
E+ VE KKA+PK+ P S R + P
Sbjct: 138 FHEINNKMVECKKAQPKEVMSPTGSARGRSRVMP 171
Score = 130 (50.8 bits), Expect = 3.4e-07, P = 3.4e-07
Identities = 27/64 (42%), Positives = 43/64 (67%)
Query: 74 KDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVKKA 133
+++F QFG+ +E +MRD T RSRGFGF+TF + VD +LA+ ++ EL ++ K A
Sbjct: 4 REYFGQFGEEKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQ-SRHELDSKTIDPKVA 62
Query: 134 EPKK 137
P++
Sbjct: 63 FPRR 66
>ZFIN|ZDB-GENE-030131-2249 [details] [associations]
symbol:hnrnpa0a "heterogeneous nuclear
ribonucleoprotein A0a" species:7955 "Danio rerio" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0005575 "cellular_component"
evidence=ND] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-030131-2249
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724
HOVERGEN:HBG002295 HOGENOM:HOG000234442 OrthoDB:EOG4W6NX4
EMBL:BC066672 IPI:IPI00995382 RefSeq:NP_997810.1 UniGene:Dr.75559
ProteinModelPortal:Q6NYB0 SMR:Q6NYB0 STRING:Q6NYB0 PRIDE:Q6NYB0
GeneID:323529 KEGG:dre:323529 CTD:323529 InParanoid:Q6NYB0
NextBio:20808302 ArrayExpress:Q6NYB0 Bgee:Q6NYB0 Uniprot:Q6NYB0
Length = 305
Score = 240 (89.5 bits), Expect = 4.3e-23, Sum P(2) = 4.3e-23
Identities = 49/140 (35%), Positives = 81/140 (57%)
Query: 1 MKDRKTGQPRGFGFVTYADPSVVDKVIEDT-HIINGKQVEIKRTIPKGAVGSKDF--KTK 57
+++++ + R FGFVTY+ P D + HI++G VE+KR + + G + K K
Sbjct: 42 VQNQQLKRSRCFGFVTYSSPDEADSAMSARPHILDGNNVELKRAVAREDAGKPEALAKVK 101
Query: 58 KIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAK 117
KIF+GG+ + ED +D F QFG V++ +++ D T + RGFGF+ F+ + D +
Sbjct: 102 KIFIGGLKDDIEEDHLRDCFSQFGAVEKAEVITDKETGKKRGFGFVYFEDNDSADKAVVL 161
Query: 118 GNKLELAGAQVEVKKAEPKK 137
+ + G +VEVKKA K+
Sbjct: 162 KFHM-INGHKVEVKKALTKQ 180
Score = 115 (45.5 bits), Expect = 4.6e-06, Sum P(2) = 4.6e-06
Identities = 23/76 (30%), Positives = 43/76 (56%)
Query: 58 KIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAK 117
K+FVGG+ +D ++ F Q+G + + ++++ RSR FGF+T+ + D ++
Sbjct: 11 KLFVGGLNVQTTDDGLRNHFEQYGKLTDCVVVQNQQLKRSRCFGFVTYSSPDEADSAMSA 70
Query: 118 GNKLELAGAQVEVKKA 133
+ L G VE+K+A
Sbjct: 71 RPHI-LDGNNVELKRA 85
Score = 41 (19.5 bits), Expect = 4.3e-23, Sum P(2) = 4.3e-23
Identities = 8/14 (57%), Positives = 9/14 (64%)
Query: 231 GYSGRYGG-FNRGY 243
GY G YGG + GY
Sbjct: 232 GYGGGYGGGYGGGY 245
Score = 41 (19.5 bits), Expect = 4.3e-23, Sum P(2) = 4.3e-23
Identities = 8/14 (57%), Positives = 9/14 (64%)
Query: 231 GYSGRYGG-FNRGY 243
GY G YGG + GY
Sbjct: 228 GYGGGYGGGYGGGY 241
Score = 37 (18.1 bits), Expect = 1.1e-22, Sum P(2) = 1.1e-22
Identities = 7/13 (53%), Positives = 7/13 (53%)
Query: 231 GYSGRYGGFNRGY 243
GY G YG GY
Sbjct: 240 GYGGGYGDQMEGY 252
Score = 37 (18.1 bits), Expect = 1.1e-22, Sum P(2) = 1.1e-22
Identities = 8/13 (61%), Positives = 9/13 (69%)
Query: 231 GYSGRYGGF-NRG 242
GY GR GG+ N G
Sbjct: 207 GYGGRGGGYGNYG 219
>ZFIN|ZDB-GENE-040426-2516 [details] [associations]
symbol:zgc:77052 "zgc:77052" species:7955 "Danio
rerio" [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-040426-2516 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 eggNOG:COG0724 HOGENOM:HOG000234441
HOVERGEN:HBG002295 GeneTree:ENSGT00700000104347 InterPro:IPR012956
Pfam:PF08143 OrthoDB:EOG42BX9K EMBL:FP085391 EMBL:BC066681
IPI:IPI00497482 RefSeq:NP_998467.1 UniGene:Dr.75633 SMR:Q6NYA1
STRING:Q6NYA1 Ensembl:ENSDART00000098408 GeneID:406594
KEGG:dre:406594 OMA:EIKTYFS NextBio:20818146 Uniprot:Q6NYA1
Length = 309
Score = 237 (88.5 bits), Expect = 4.3e-23, Sum P(2) = 4.3e-23
Identities = 50/136 (36%), Positives = 82/136 (60%)
Query: 3 DRKTGQPRGFGFVTYADPSVVDKVIEDT-HIINGKQVEIKRTIPKGAVGSKDFKTKKIFV 61
D TG+ RGFGF+ + + VD+V++ H ++G+Q++ PK A+ K KKIFV
Sbjct: 79 DSNTGRSRGFGFILFKESDSVDRVLQQKEHRLDGRQID-----PKRAMAIKKEPVKKIFV 133
Query: 62 GGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKL 121
GG+ E++ +++F FG+++ ++ D TS+ RGF FITF E AV +L K
Sbjct: 134 GGLNPETTEEKIREYFGSFGEIETIELPTDPKTSKRRGFVFITFKEEFAVKKILEKKYH- 192
Query: 122 ELAGAQVEVKKAEPKK 137
+ G++ E+K A+PK+
Sbjct: 193 NVCGSKCEIKIAQPKE 208
Score = 152 (58.6 bits), Expect = 2.7e-13, Sum P(2) = 2.7e-13
Identities = 31/76 (40%), Positives = 48/76 (63%)
Query: 58 KIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAK 117
K+FVGG+ ++ + KD+F +FG+V + I D +T RSRGFGFI F +VD +L +
Sbjct: 46 KMFVGGLSWDTSKKDLKDYFSKFGEVMDCTIKMDSNTGRSRGFGFILFKESDSVDRVLQQ 105
Query: 118 GNKLELAGAQVEVKKA 133
+ L G Q++ K+A
Sbjct: 106 -KEHRLDGRQIDPKRA 120
Score = 44 (20.5 bits), Expect = 4.3e-23, Sum P(2) = 4.3e-23
Identities = 8/15 (53%), Positives = 9/15 (60%)
Query: 232 YSGRYGGFNRGYDVT 246
YS Y G+ GYD T
Sbjct: 272 YSSGYYGYGSGYDYT 286
>MGI|MGI:107376 [details] [associations]
symbol:Msi1 "musashi RNA-binding protein 1" species:10090
"Mus musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0003727 "single-stranded RNA binding"
evidence=IDA] [GO:0005634 "nucleus" evidence=IDA] [GO:0005737
"cytoplasm" evidence=IDA] [GO:0005844 "polysome" evidence=IDA]
[GO:0008266 "poly(U) RNA binding" evidence=IDA] [GO:0009725
"response to hormone stimulus" evidence=ISO] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
MGI:MGI:107376 GO:GO:0005634 GO:GO:0005737 GO:GO:0008266
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0009725 GO:GO:0005844
GO:GO:0030855 eggNOG:COG0724 HOVERGEN:HBG002295 KO:K14411
GeneTree:ENSGT00700000104255 CTD:4440 OMA:GLPGSHP OrthoDB:EOG48GW3J
EMBL:D49654 EMBL:AK084019 IPI:IPI00121300 IPI:IPI00462260
RefSeq:NP_032655.1 UniGene:Mm.5077 PDB:1UAW PDB:2MSS PDB:2MST
PDB:2RS2 PDBsum:1UAW PDBsum:2MSS PDBsum:2MST PDBsum:2RS2
ProteinModelPortal:Q61474 SMR:Q61474 STRING:Q61474
PhosphoSite:Q61474 PaxDb:Q61474 PRIDE:Q61474 DNASU:17690
Ensembl:ENSMUST00000150779 GeneID:17690 KEGG:mmu:17690
UCSC:uc008zdu.1 UCSC:uc008zdv.1 InParanoid:Q61474 ChiTaRS:MSI1
EvolutionaryTrace:Q61474 NextBio:292270 Bgee:Q61474 CleanEx:MM_MSI1
Genevestigator:Q61474 GermOnline:ENSMUSG00000054256 Uniprot:Q61474
Length = 362
Score = 266 (98.7 bits), Expect = 4.8e-23, P = 4.8e-23
Identities = 59/154 (38%), Positives = 91/154 (59%)
Query: 1 MKDRKTGQPRGFGFVTYADPSVVDKVI-EDTHIINGKQVEIKRTIPKGAVGSKDFKTKKI 59
M+D T + RGFGFVT+ D + VDKV+ + H ++ K ++ K P+ A +TKKI
Sbjct: 52 MRDPLTKRSRGFGFVTFMDQAGVDKVLAQSRHELDSKTIDPKVAFPRRAQPKMVTRTKKI 111
Query: 60 FVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGN 119
FVGG+ + ++ K +F QFG V + +M D +T+R RGFGF+TF++E V+ + + +
Sbjct: 112 FVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKV-CEIH 170
Query: 120 KLELAGAQVEVKKAEPKKPNLPQPSYRRYNNPKP 153
E+ VE KKA+PK+ P S R + P
Sbjct: 171 FHEINNKMVECKKAQPKEVMSPTGSARGRSRVMP 204
Score = 163 (62.4 bits), Expect = 1.7e-11, P = 1.7e-11
Identities = 32/80 (40%), Positives = 53/80 (66%)
Query: 58 KIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAK 117
K+F+GG+ ++ +++F QFG+V+E +MRD T RSRGFGF+TF + VD +LA+
Sbjct: 21 KMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQ 80
Query: 118 GNKLELAGAQVEVKKAEPKK 137
++ EL ++ K A P++
Sbjct: 81 -SRHELDSKTIDPKVAFPRR 99
>RGD|628778 [details] [associations]
symbol:Msi1 "musashi RNA-binding protein 1" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=NAS] [GO:0003727 "single-stranded RNA binding"
evidence=ISO] [GO:0005634 "nucleus" evidence=IEA;ISO] [GO:0005737
"cytoplasm" evidence=IEA;ISO] [GO:0005844 "polysome"
evidence=IEA;ISO] [GO:0008266 "poly(U) RNA binding"
evidence=IEA;ISO] [GO:0009725 "response to hormone stimulus"
evidence=IMP] [GO:0030855 "epithelial cell differentiation"
evidence=IEP] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 RGD:628778 GO:GO:0005634
GO:GO:0005737 GO:GO:0008266 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0009725 GO:GO:0005844 GO:GO:0030855
eggNOG:COG0724 HOGENOM:HOG000234441 HOVERGEN:HBG002295 KO:K14411
CTD:4440 OrthoDB:EOG48GW3J EMBL:AY043393 IPI:IPI00202463
RefSeq:NP_683688.1 UniGene:Rn.162146 ProteinModelPortal:Q8K3P4
SMR:Q8K3P4 STRING:Q8K3P4 PhosphoSite:Q8K3P4 GeneID:259272
KEGG:rno:259272 NextBio:624325 ArrayExpress:Q8K3P4
Genevestigator:Q8K3P4 Uniprot:Q8K3P4
Length = 362
Score = 266 (98.7 bits), Expect = 4.8e-23, P = 4.8e-23
Identities = 59/154 (38%), Positives = 91/154 (59%)
Query: 1 MKDRKTGQPRGFGFVTYADPSVVDKVI-EDTHIINGKQVEIKRTIPKGAVGSKDFKTKKI 59
M+D T + RGFGFVT+ D + VDKV+ + H ++ K ++ K P+ A +TKKI
Sbjct: 52 MRDPLTKRSRGFGFVTFMDQAGVDKVLAQSRHELDSKTIDPKVAFPRRAQPKMVTRTKKI 111
Query: 60 FVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGN 119
FVGG+ + ++ K +F QFG V + +M D +T+R RGFGF+TF++E V+ + + +
Sbjct: 112 FVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKV-CEIH 170
Query: 120 KLELAGAQVEVKKAEPKKPNLPQPSYRRYNNPKP 153
E+ VE KKA+PK+ P S R + P
Sbjct: 171 FHEINNKMVECKKAQPKEVMSPTGSARGRSRVMP 204
Score = 163 (62.4 bits), Expect = 1.7e-11, P = 1.7e-11
Identities = 32/80 (40%), Positives = 53/80 (66%)
Query: 58 KIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAK 117
K+F+GG+ ++ +++F QFG+V+E +MRD T RSRGFGF+TF + VD +LA+
Sbjct: 21 KMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQ 80
Query: 118 GNKLELAGAQVEVKKAEPKK 137
++ EL ++ K A P++
Sbjct: 81 -SRHELDSKTIDPKVAFPRR 99
>UNIPROTKB|Q8K3P4 [details] [associations]
symbol:Msi1 "RNA-binding protein Musashi homolog 1"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 RGD:628778 GO:GO:0005634
GO:GO:0005737 GO:GO:0008266 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0009725 GO:GO:0005844 GO:GO:0030855
eggNOG:COG0724 HOGENOM:HOG000234441 HOVERGEN:HBG002295 KO:K14411
CTD:4440 OrthoDB:EOG48GW3J EMBL:AY043393 IPI:IPI00202463
RefSeq:NP_683688.1 UniGene:Rn.162146 ProteinModelPortal:Q8K3P4
SMR:Q8K3P4 STRING:Q8K3P4 PhosphoSite:Q8K3P4 GeneID:259272
KEGG:rno:259272 NextBio:624325 ArrayExpress:Q8K3P4
Genevestigator:Q8K3P4 Uniprot:Q8K3P4
Length = 362
Score = 266 (98.7 bits), Expect = 4.8e-23, P = 4.8e-23
Identities = 59/154 (38%), Positives = 91/154 (59%)
Query: 1 MKDRKTGQPRGFGFVTYADPSVVDKVI-EDTHIINGKQVEIKRTIPKGAVGSKDFKTKKI 59
M+D T + RGFGFVT+ D + VDKV+ + H ++ K ++ K P+ A +TKKI
Sbjct: 52 MRDPLTKRSRGFGFVTFMDQAGVDKVLAQSRHELDSKTIDPKVAFPRRAQPKMVTRTKKI 111
Query: 60 FVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGN 119
FVGG+ + ++ K +F QFG V + +M D +T+R RGFGF+TF++E V+ + + +
Sbjct: 112 FVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKV-CEIH 170
Query: 120 KLELAGAQVEVKKAEPKKPNLPQPSYRRYNNPKP 153
E+ VE KKA+PK+ P S R + P
Sbjct: 171 FHEINNKMVECKKAQPKEVMSPTGSARGRSRVMP 204
Score = 163 (62.4 bits), Expect = 1.7e-11, P = 1.7e-11
Identities = 32/80 (40%), Positives = 53/80 (66%)
Query: 58 KIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAK 117
K+F+GG+ ++ +++F QFG+V+E +MRD T RSRGFGF+TF + VD +LA+
Sbjct: 21 KMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQ 80
Query: 118 GNKLELAGAQVEVKKAEPKK 137
++ EL ++ K A P++
Sbjct: 81 -SRHELDSKTIDPKVAFPRR 99
>UNIPROTKB|F1LRH1 [details] [associations]
symbol:Msi1 "RNA-binding protein Musashi homolog 1"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0005844 "polysome" evidence=IEA]
[GO:0008266 "poly(U) RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:628778 GO:GO:0005634 GO:GO:0005737 GO:GO:0008266 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0005844 GeneTree:ENSGT00700000104255
IPI:IPI00202463 Ensembl:ENSRNOT00000001532 ArrayExpress:F1LRH1
Uniprot:F1LRH1
Length = 329
Score = 266 (98.7 bits), Expect = 4.8e-23, P = 4.8e-23
Identities = 59/154 (38%), Positives = 91/154 (59%)
Query: 1 MKDRKTGQPRGFGFVTYADPSVVDKVI-EDTHIINGKQVEIKRTIPKGAVGSKDFKTKKI 59
M+D T + RGFGFVT+ D + VDKV+ + H ++ K ++ K P+ A +TKKI
Sbjct: 19 MRDPLTKRSRGFGFVTFMDQAGVDKVLAQSRHELDSKTIDPKVAFPRRAQPKMVTRTKKI 78
Query: 60 FVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGN 119
FVGG+ + ++ K +F QFG V + +M D +T+R RGFGF+TF++E V+ + + +
Sbjct: 79 FVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKV-CEIH 137
Query: 120 KLELAGAQVEVKKAEPKKPNLPQPSYRRYNNPKP 153
E+ VE KKA+PK+ P S R + P
Sbjct: 138 FHEINNKMVECKKAQPKEVMSPTGSARGRSRVMP 171
Score = 136 (52.9 bits), Expect = 1.2e-08, P = 1.2e-08
Identities = 28/64 (43%), Positives = 44/64 (68%)
Query: 74 KDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVKKA 133
+++F QFG+V+E +MRD T RSRGFGF+TF + VD +LA+ ++ EL ++ K A
Sbjct: 4 REYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQ-SRHELDSKTIDPKVA 62
Query: 134 EPKK 137
P++
Sbjct: 63 FPRR 66
>DICTYBASE|DDB_G0292422 [details] [associations]
symbol:DDB_G0292422 "RNA-binding region RNP-1
domain-containing protein" species:44689 "Dictyostelium discoideum"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0008150 "biological_process"
evidence=ND] [GO:0005575 "cellular_component" evidence=ND]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 dictyBase:DDB_G0292422 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AAFI02000190 KO:K14411
eggNOG:NOG289504 RefSeq:XP_629598.1 ProteinModelPortal:Q54D98
EnsemblProtists:DDB0233639 GeneID:8628658 KEGG:ddi:DDB_G0292422
InParanoid:Q54D98 OMA:YYEDESS Uniprot:Q54D98
Length = 687
Score = 273 (101.2 bits), Expect = 8.2e-23, P = 8.2e-23
Identities = 52/138 (37%), Positives = 91/138 (65%)
Query: 5 KTGQPRGFGFVTYADPSVVDKVIEDTHIINGKQVEIKRTIPKGAVGSKDFKTKKIFVGGI 64
K + RGFGFVT+ DPSV+D+VI H I GK VEI+R IPK + +++ K +K+FVGG+
Sbjct: 143 KASKSRGFGFVTFVDPSVIDEVILINHSIEGKNVEIRRAIPKEEM-TEEPKKQKLFVGGL 201
Query: 65 PSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELA 124
P + D+F ++F +FG++ E+ ++ + + + +GFGFI F E +V++++ + +
Sbjct: 202 PKHITSDDFNNYFSEFGEISEYNLLTEKNGT-IKGFGFICFKDE-SVNEIILNEQQHIIL 259
Query: 125 GAQVEVKKAEPKKPNLPQ 142
G +V+++ A+ + L Q
Sbjct: 260 GKRVDIRIADSQNKRLQQ 277
Score = 159 (61.0 bits), Expect = 1.5e-10, P = 1.5e-10
Identities = 31/91 (34%), Positives = 56/91 (61%)
Query: 58 KIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMR-DHSTSRSRGFGFITFDTEQAVDDLLA 116
KIFVGG+ + + + KD+F FG+V+E +++ S+SRGFGF+TF +D+++
Sbjct: 107 KIFVGGLLKTSSNEILKDYFSNFGEVKESIVIKATEKASKSRGFGFVTFVDPSVIDEVIL 166
Query: 117 KGNKLELAGAQVEVKKAEPKKPNLPQPSYRR 147
+ +E G VE+++A PK+ +P ++
Sbjct: 167 INHSIE--GKNVEIRRAIPKEEMTEEPKKQK 195
>UNIPROTKB|Q32P51 [details] [associations]
symbol:HNRNPA1L2 "Heterogeneous nuclear ribonucleoprotein
A1-like 2" species:9606 "Homo sapiens" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005681 "spliceosomal complex" evidence=IEA] [GO:0051028 "mRNA
transport" evidence=IEA] [GO:0000380 "alternative mRNA splicing,
via spliceosome" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005737 GO:GO:0008380
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0005681
GO:GO:0003723 GO:GO:0051028 eggNOG:COG0724 HSSP:Q61474
EMBL:CH471124 EMBL:AK123159 EMBL:AL137058 EMBL:BC108266
IPI:IPI00879501 RefSeq:NP_001011724.1 RefSeq:NP_001011725.1
UniGene:Hs.447506 ProteinModelPortal:Q32P51 SMR:Q32P51
IntAct:Q32P51 STRING:Q32P51 PhosphoSite:Q32P51 DMDM:190356061
PaxDb:Q32P51 PRIDE:Q32P51 Ensembl:ENST00000342657
Ensembl:ENST00000357495 Ensembl:ENST00000398039 GeneID:144983
KEGG:hsa:144983 UCSC:uc001vgx.1 CTD:144983 GeneCards:GC13P053192
HGNC:HGNC:27067 neXtProt:NX_Q32P51 PharmGKB:PA164720701
HOGENOM:HOG000234442 InParanoid:Q32P51 KO:K12741 OMA:HYGSIVD
OrthoDB:EOG4HQDKF GenomeRNAi:144983 NextBio:85023 Bgee:Q32P51
Genevestigator:Q32P51 InterPro:IPR021662 Pfam:PF11627
Uniprot:Q32P51
Length = 320
Score = 242 (90.2 bits), Expect = 1.1e-22, Sum P(2) = 1.1e-22
Identities = 55/150 (36%), Positives = 80/150 (53%)
Query: 1 MKDRKTGQPRGFGFVTYADPSVVDKVIEDT-HIINGKQVEIKRTIPK--GAVGSKDFKTK 57
M+D T + RGFGFVTYA VD + T H ++G+ VE KR + + K
Sbjct: 46 MRDPNTKRSRGFGFVTYATVEEVDAAMNTTPHKVDGRVVEPKRAVSREDSQRPGAHLTVK 105
Query: 58 KIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAK 117
KIFVGGI E +D+F Q+G ++ +IM D + + RGF F+TFD +VD ++ +
Sbjct: 106 KIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQ 165
Query: 118 GNKLELAGAQVEVKKAEPKKPNLPQPSYRR 147
+ G EV+KA PK+ S +R
Sbjct: 166 KYHT-VKGHNCEVRKALPKQEMASASSSQR 194
Score = 138 (53.6 bits), Expect = 1.1e-10, Sum P(2) = 1.1e-10
Identities = 30/89 (33%), Positives = 52/89 (58%)
Query: 46 KGAVGSKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITF 105
K A + + +K+F+GG+ ++ + F Q+G + + +MRD +T RSRGFGF+T+
Sbjct: 3 KSASPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTY 62
Query: 106 DTEQAVDDLL-AKGNKLELAGAQVEVKKA 133
T + VD + +K++ G VE K+A
Sbjct: 63 ATVEEVDAAMNTTPHKVD--GRVVEPKRA 89
Score = 35 (17.4 bits), Expect = 1.1e-22, Sum P(2) = 1.1e-22
Identities = 7/15 (46%), Positives = 9/15 (60%)
Query: 234 GRYGGFNRGYDVTGD 248
G YGG GY+ G+
Sbjct: 235 GGYGGSGDGYNGFGN 249
>TAIR|locus:2115169 [details] [associations]
symbol:AT4G36960 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0008150 "biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002687 GenomeReviews:CT486007_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724 KO:K14411
HSSP:Q14103 UniGene:At.4642 UniGene:At.4643 EMBL:AY048286
EMBL:BT000573 IPI:IPI00527793 RefSeq:NP_001154290.1
RefSeq:NP_568011.1 ProteinModelPortal:Q94AC3 SMR:Q94AC3
IntAct:Q94AC3 PaxDb:Q94AC3 PRIDE:Q94AC3 EnsemblPlants:AT4G36960.1
EnsemblPlants:AT4G36960.2 GeneID:829850 KEGG:ath:AT4G36960
TAIR:At4g36960 HOGENOM:HOG000070627 InParanoid:Q94AC3 OMA:EITDLYM
PhylomeDB:Q94AC3 ProtClustDB:CLSN2689792 Genevestigator:Q94AC3
Uniprot:Q94AC3
Length = 379
Score = 261 (96.9 bits), Expect = 1.6e-22, P = 1.6e-22
Identities = 54/156 (34%), Positives = 89/156 (57%)
Query: 1 MKDRKTGQPRGFGFVTYADPSVVDKVIEDTHIINGKQVEIKRTIPKGAVGSKDFKTKKIF 60
MKDR TG+ RGFG+VT+A ++ H + + +E+K PK + K +IF
Sbjct: 35 MKDRSTGRSRGFGYVTFASAEDAKNALKGEHFLGNRILEVKVATPKEEMRQPAKKVTRIF 94
Query: 61 VGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNK 120
V IPSSV+E +F+ F ++G++ + + +D+++ + RG GFITF + +V+DL+ +
Sbjct: 95 VARIPSSVSESDFRSHFERYGEITDLYMPKDYNSKQHRGIGFITFSSADSVEDLMEDTH- 153
Query: 121 LELAGAQVEVKKAEPKKPNLPQ--PSYRRYNNPKPA 154
+L G V V +A PK+ + P P R + P A
Sbjct: 154 -DLGGTTVAVDRATPKEDDHPPRPPPVARMSRPPVA 188
Score = 161 (61.7 bits), Expect = 3.1e-11, P = 3.1e-11
Identities = 35/88 (39%), Positives = 55/88 (62%)
Query: 57 KKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLA 116
+K+ V GIP ++ D KD+ +FGD+++ +M+D ST RSRGFG++TF + + + L
Sbjct: 3 RKLVVLGIPWDIDSDGLKDYMSKFGDLEDCIVMKDRSTGRSRGFGYVTFASAEDAKNAL- 61
Query: 117 KGNKLELAGAQVEVKKAEPKKPNLPQPS 144
KG L +EVK A PK+ + QP+
Sbjct: 62 KGEHF-LGNRILEVKVATPKE-EMRQPA 87
Score = 150 (57.9 bits), Expect = 4.9e-10, P = 4.9e-10
Identities = 31/78 (39%), Positives = 47/78 (60%)
Query: 58 KIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAK 117
KIFVG +P + D+ +D+F +FG +Q+ I +D S RGFGF+TF E V D +A+
Sbjct: 241 KIFVGRLPQEASVDDLRDYFGRFGHIQDAYIPKDPKRSGHRGFGFVTF-AENGVADRVAR 299
Query: 118 GNKLELAGAQVEVKKAEP 135
+ E+ G +V + A P
Sbjct: 300 RSH-EICGQEVAIDSATP 316
>UNIPROTKB|F1NIB2 [details] [associations]
symbol:HNRNPAB "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0030529
GeneTree:ENSGT00700000104347 OMA:FILFKDP EMBL:AADN02028501
EMBL:AADN02028502 EMBL:AADN02028503 IPI:IPI00574172
Ensembl:ENSGALT00000023234 ArrayExpress:F1NIB2 Uniprot:F1NIB2
Length = 263
Score = 237 (88.5 bits), Expect = 1.8e-22, Sum P(2) = 1.8e-22
Identities = 49/136 (36%), Positives = 83/136 (61%)
Query: 3 DRKTGQPRGFGFVTYADPSVVDKVIEDT-HIINGKQVEIKRTIPKGAVGSKDFKTKKIFV 61
D TG+ RGFGF+ + +P V+KV+E H ++G+ ++ PK A+ K KKIFV
Sbjct: 34 DPNTGRSRGFGFILFKEPGSVEKVLEQKEHRLDGRLID-----PKKAMAMKKDPVKKIFV 88
Query: 62 GGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKL 121
GG+ E++ +++F +FG+++ ++ D T++ RGF FITF E V +L K
Sbjct: 89 GGLNPEATEEKIREYFGEFGEIEAIELPMDPKTNKRRGFVFITFKEEDPVKKVLEKKFH- 147
Query: 122 ELAGAQVEVKKAEPKK 137
++G++ E+K A+PK+
Sbjct: 148 NVSGSKCEIKVAQPKE 163
Score = 141 (54.7 bits), Expect = 7.7e-12, Sum P(2) = 7.7e-12
Identities = 31/80 (38%), Positives = 48/80 (60%)
Query: 58 KIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAK 117
K+FVGG+ ++ + KD+F +FG+V + I D +T RSRGFGFI F +V+ +L +
Sbjct: 1 KMFVGGLSWDTSKKDLKDYFTKFGEVTDCTIKMDPNTGRSRGFGFILFKEPGSVEKVLEQ 60
Query: 118 GNKLELAGAQVEVKKAEPKK 137
+ L G ++ KKA K
Sbjct: 61 -KEHRLDGRLIDPKKAMAMK 79
Score = 38 (18.4 bits), Expect = 1.8e-22, Sum P(2) = 1.8e-22
Identities = 9/15 (60%), Positives = 9/15 (60%)
Query: 228 SSLGYSGRYGGFNRG 242
SS G G YGG RG
Sbjct: 171 SSGGGRGSYGGRGRG 185
>UNIPROTKB|F1NIB4 [details] [associations]
symbol:HNRNPAB "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104347 EMBL:AADN02028501 EMBL:AADN02028502
EMBL:AADN02028503 IPI:IPI00603451 ProteinModelPortal:F1NIB4
Ensembl:ENSGALT00000023233 ArrayExpress:F1NIB4 Uniprot:F1NIB4
Length = 212
Score = 237 (88.5 bits), Expect = 1.8e-22, Sum P(2) = 1.8e-22
Identities = 49/136 (36%), Positives = 83/136 (61%)
Query: 3 DRKTGQPRGFGFVTYADPSVVDKVIEDT-HIINGKQVEIKRTIPKGAVGSKDFKTKKIFV 61
D TG+ RGFGF+ + +P V+KV+E H ++G+ ++ PK A+ K KKIFV
Sbjct: 34 DPNTGRSRGFGFILFKEPGSVEKVLEQKEHRLDGRLID-----PKKAMAMKKDPVKKIFV 88
Query: 62 GGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKL 121
GG+ E++ +++F +FG+++ ++ D T++ RGF FITF E V +L K
Sbjct: 89 GGLNPEATEEKIREYFGEFGEIEAIELPMDPKTNKRRGFVFITFKEEDPVKKVLEKKFH- 147
Query: 122 ELAGAQVEVKKAEPKK 137
++G++ E+K A+PK+
Sbjct: 148 NVSGSKCEIKVAQPKE 163
Score = 141 (54.7 bits), Expect = 1.8e-12, Sum P(2) = 1.8e-12
Identities = 31/80 (38%), Positives = 48/80 (60%)
Query: 58 KIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAK 117
K+FVGG+ ++ + KD+F +FG+V + I D +T RSRGFGFI F +V+ +L +
Sbjct: 1 KMFVGGLSWDTSKKDLKDYFTKFGEVTDCTIKMDPNTGRSRGFGFILFKEPGSVEKVLEQ 60
Query: 118 GNKLELAGAQVEVKKAEPKK 137
+ L G ++ KKA K
Sbjct: 61 -KEHRLDGRLIDPKKAMAMK 79
Score = 38 (18.4 bits), Expect = 1.8e-22, Sum P(2) = 1.8e-22
Identities = 9/15 (60%), Positives = 9/15 (60%)
Query: 228 SSLGYSGRYGGFNRG 242
SS G G YGG RG
Sbjct: 171 SSGGGRGSYGGRGRG 185
>RGD|1305280 [details] [associations]
symbol:Dazap1 "DAZ associated protein 1" species:10116 "Rattus
norvegicus" [GO:0001893 "maternal placenta development"
evidence=ISO] [GO:0005634 "nucleus" evidence=ISO] [GO:0005737
"cytoplasm" evidence=ISO] [GO:0007283 "spermatogenesis"
evidence=ISO] [GO:0008283 "cell proliferation" evidence=ISO]
[GO:0035613 "RNA stem-loop binding" evidence=ISO] [GO:0005730
"nucleolus" evidence=ISO] [GO:0005844 "polysome" evidence=ISO]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 RGD:1305280 GO:GO:0005634 GO:GO:0005737 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:CH474029 eggNOG:COG0724
CTD:26528 HOGENOM:HOG000234441 HOVERGEN:HBG002295 KO:K14411
OrthoDB:EOG40ZQXT OMA:GGYDMYN IPI:IPI00365961 EMBL:BC098930
RefSeq:NP_001020913.1 UniGene:Rn.16769 SMR:Q4KLZ3 GeneID:362836
KEGG:rno:362836 UCSC:RGD:1305280 InParanoid:Q4KLZ3 NextBio:681451
Genevestigator:Q4KLZ3 Uniprot:Q4KLZ3
Length = 405
Score = 261 (96.9 bits), Expect = 2.5e-22, P = 2.5e-22
Identities = 67/167 (40%), Positives = 96/167 (57%)
Query: 1 MKDRKTGQPRGFGFVTYADPSVVDKVIEDT-HIINGKQVEIK----------RTIPK-GA 48
MKD+ T Q RGFGFV + DP+ V V+ H ++G+ ++ K RT PK G
Sbjct: 42 MKDKTTNQSRGFGFVKFKDPNCVGTVLASRPHTLDGRNIDPKPCTPRGMQPERTRPKEGW 101
Query: 49 VG--SKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFD 106
G S K+ KIFVGGIP + E E +++F +FG V E ++ D R RGFGFITF+
Sbjct: 102 KGPRSDSSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFE 161
Query: 107 TEQAVDDLLAKGNKLELAGAQVEVKKAEPK--KPNLP-QPSYRRYNN 150
EQ+VD + + ++ G +VEVK+AEP+ K P QP ++ +
Sbjct: 162 DEQSVDQAVNM-HFHDIMGKKVEVKRAEPRDSKNQAPGQPGASQWGS 207
Score = 142 (55.0 bits), Expect = 4.2e-09, P = 4.2e-09
Identities = 30/88 (34%), Positives = 50/88 (56%)
Query: 58 KIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAK 117
K+FVGG+ S ++ + +F Q+G+V + IM+D +T++SRGFGF+ F V +LA
Sbjct: 11 KLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS 70
Query: 118 GNKLELAGAQVEVKKAEPK--KPNLPQP 143
L G ++ K P+ +P +P
Sbjct: 71 -RPHTLDGRNIDPKPCTPRGMQPERTRP 97
>UNIPROTKB|E2RK48 [details] [associations]
symbol:MSI1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 KO:K14411
GeneTree:ENSGT00700000104255 CTD:4440 EMBL:AAEX03014735
RefSeq:XP_854252.2 Ensembl:ENSCAFT00000016345 GeneID:611488
KEGG:cfa:611488 Uniprot:E2RK48
Length = 362
Score = 259 (96.2 bits), Expect = 2.6e-22, P = 2.6e-22
Identities = 58/154 (37%), Positives = 90/154 (58%)
Query: 1 MKDRKTGQPRGFGFVTYADPSVVDKVI-EDTHIINGKQVEIKRTIPKGAVGSKDFKTKKI 59
M+D T + RGFGFVT+ D + VDKV+ + H ++ K ++ K P+ A +TKKI
Sbjct: 52 MRDPLTKRSRGFGFVTFMDQAGVDKVLAQSRHELDSKTIDPKVAFPRRAQPKMVTRTKKI 111
Query: 60 FVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGN 119
FVGG+ + ++ K +F QF V + +M D +T+R RGFGF+TF++E V+ + + +
Sbjct: 112 FVGGLSVNTTVEDVKQYFEQFEKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKV-CEIH 170
Query: 120 KLELAGAQVEVKKAEPKKPNLPQPSYRRYNNPKP 153
E+ VE KKA+PK+ P S R + P
Sbjct: 171 FHEINNKMVECKKAQPKEVMSPTGSARGRSRVMP 204
Score = 163 (62.4 bits), Expect = 1.7e-11, P = 1.7e-11
Identities = 32/80 (40%), Positives = 53/80 (66%)
Query: 58 KIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAK 117
K+F+GG+ ++ +++F QFG+V+E +MRD T RSRGFGF+TF + VD +LA+
Sbjct: 21 KMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQ 80
Query: 118 GNKLELAGAQVEVKKAEPKK 137
++ EL ++ K A P++
Sbjct: 81 -SRHELDSKTIDPKVAFPRR 99
>ZFIN|ZDB-GENE-030131-6154 [details] [associations]
symbol:hnrnpa0b "heterogeneous nuclear
ribonucleoprotein A0b" species:7955 "Danio rerio" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0030529 "ribonucleoprotein complex"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-030131-6154
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0030529
eggNOG:COG0724 HOVERGEN:HBG002295 HOGENOM:HOG000234442 KO:K12894
EMBL:BC066434 IPI:IPI00507638 RefSeq:NP_999871.1 UniGene:Dr.35374
ProteinModelPortal:Q6NYW8 SMR:Q6NYW8 STRING:Q6NYW8 PRIDE:Q6NYW8
GeneID:334222 KEGG:dre:334222 CTD:334222 InParanoid:Q6NYW8
OrthoDB:EOG4M65KN NextBio:20810313 ArrayExpress:Q6NYW8 Bgee:Q6NYW8
Uniprot:Q6NYW8
Length = 314
Score = 228 (85.3 bits), Expect = 2.9e-22, Sum P(2) = 2.9e-22
Identities = 47/131 (35%), Positives = 75/131 (57%)
Query: 10 RGFGFVTYADPSVVDKVIEDT-HIINGKQVEIKRTIPKGAVGSKDF--KTKKIFVGGIPS 66
R FGFVTY+ D + H+++GK VE+KR + + G + K KKIFVGG+
Sbjct: 49 RCFGFVTYSTSEEADAAMAARPHVVDGKNVEVKRAVAREDAGRPEALAKVKKIFVGGLKD 108
Query: 67 SVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGA 126
+ E + +FF QFG +++ +++ D T + RGFGF+ F+ + D + + + G
Sbjct: 109 DIEEKDLTEFFSQFGMIEKSEVITDKDTGKKRGFGFVHFEDNDSADKAVVLKFHM-INGH 167
Query: 127 QVEVKKAEPKK 137
+VEVKKA K+
Sbjct: 168 KVEVKKALTKQ 178
Score = 129 (50.5 bits), Expect = 5.4e-09, Sum P(2) = 5.4e-09
Identities = 27/79 (34%), Positives = 45/79 (56%)
Query: 55 KTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDL 114
K K+FVGG+ D + +F QFG++ + ++++ RSR FGF+T+ T + D
Sbjct: 6 KLCKLFVGGLNVQTTNDGLRSYFEQFGNLTDCVVVQNDQLQRSRCFGFVTYSTSEEADAA 65
Query: 115 LAKGNKLELAGAQVEVKKA 133
+A + + G VEVK+A
Sbjct: 66 MAARPHV-VDGKNVEVKRA 83
Score = 106 (42.4 bits), Expect = 3.9e-05, Sum P(2) = 3.9e-05
Identities = 21/45 (46%), Positives = 30/45 (66%)
Query: 3 DRKTGQPRGFGFVTYADPSVVDK-VIEDTHIINGKQVEIKRTIPK 46
D+ TG+ RGFGFV + D DK V+ H+ING +VE+K+ + K
Sbjct: 133 DKDTGKKRGFGFVHFEDNDSADKAVVLKFHMINGHKVEVKKALTK 177
Score = 45 (20.9 bits), Expect = 2.9e-22, Sum P(2) = 2.9e-22
Identities = 8/13 (61%), Positives = 9/13 (69%)
Query: 231 GYSGRYGGFNRGY 243
GY G YGG + GY
Sbjct: 219 GYGGGYGGNDGGY 231
Score = 41 (19.5 bits), Expect = 7.6e-22, Sum P(2) = 7.6e-22
Identities = 7/13 (53%), Positives = 8/13 (61%)
Query: 231 GYSGRYGGFNRGY 243
G G YGG+ GY
Sbjct: 208 GRGGGYGGYGGGY 220
Score = 41 (19.5 bits), Expect = 7.6e-22, Sum P(2) = 7.6e-22
Identities = 8/14 (57%), Positives = 9/14 (64%)
Query: 231 GYSGRYGG-FNRGY 243
GY G YGG + GY
Sbjct: 239 GYGGGYGGGYGGGY 252
Score = 40 (19.1 bits), Expect = 9.7e-22, Sum P(2) = 9.7e-22
Identities = 7/13 (53%), Positives = 8/13 (61%)
Query: 231 GYSGRYGGFNRGY 243
GY G GG+ GY
Sbjct: 212 GYGGYGGGYGGGY 224
Score = 40 (19.1 bits), Expect = 9.7e-22, Sum P(2) = 9.7e-22
Identities = 8/15 (53%), Positives = 9/15 (60%)
Query: 231 GYSGRYG--GFNRGY 243
GY G YG G+ GY
Sbjct: 230 GYGGSYGSGGYGGGY 244
Score = 39 (18.8 bits), Expect = 1.2e-21, Sum P(2) = 1.2e-21
Identities = 8/14 (57%), Positives = 8/14 (57%)
Query: 231 GYSGRYGGFNRGYD 244
GY G YGG G D
Sbjct: 215 GYGGGYGGGYGGND 228
Score = 37 (18.1 bits), Expect = 2.0e-21, Sum P(2) = 2.0e-21
Identities = 7/17 (41%), Positives = 8/17 (47%)
Query: 231 GYSGRYGGFNRGYDVTG 247
GY G GG+ Y G
Sbjct: 223 GYGGNDGGYGGSYGSGG 239
>FB|FBgn0004903 [details] [associations]
symbol:Rb97D "Ribonuclear protein at 97D" species:7227
"Drosophila melanogaster" [GO:0007286 "spermatid development"
evidence=IMP] [GO:0003729 "mRNA binding" evidence=ISS;NAS]
[GO:0007283 "spermatogenesis" evidence=NAS] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 EMBL:AE014297 GO:GO:0007275
GO:GO:0007286 GO:GO:0000166 GO:GO:0003729 Gene3D:3.30.70.330
eggNOG:COG0724 GeneTree:ENSGT00700000104255 EMBL:L02106
EMBL:BT001320 PIR:S33679 PIR:S33680 RefSeq:NP_001014671.1
RefSeq:NP_001014672.1 RefSeq:NP_001014673.1 RefSeq:NP_001014674.1
RefSeq:NP_001014675.1 RefSeq:NP_001014676.1 RefSeq:NP_001014677.1
RefSeq:NP_524520.1 RefSeq:NP_733172.1 UniGene:Dm.22918
ProteinModelPortal:Q02926 SMR:Q02926 DIP:DIP-18137N IntAct:Q02926
MINT:MINT-957540 STRING:Q02926 PaxDb:Q02926 PRIDE:Q02926
EnsemblMetazoa:FBtr0085093 EnsemblMetazoa:FBtr0100337
EnsemblMetazoa:FBtr0100339 EnsemblMetazoa:FBtr0100340 GeneID:43231
KEGG:dme:Dmel_CG6354 CTD:43231 FlyBase:FBgn0004903
InParanoid:Q02926 OMA:DICELEH OrthoDB:EOG43N5VC PhylomeDB:Q02926
ChiTaRS:Rb97D GenomeRNAi:43231 NextBio:832835 Bgee:Q02926
GermOnline:CG6354 Uniprot:Q02926
Length = 471
Score = 249 (92.7 bits), Expect = 3.2e-22, Sum P(2) = 3.2e-22
Identities = 52/136 (38%), Positives = 84/136 (61%)
Query: 1 MKDRKTGQPRGFGFVTYADPSVVDKVIEDT-HIINGKQVEIKRTIPKGAVGSKD--FKTK 57
M+D T + RGFGF+TY +VD+ E+ HII+GK VE KR +P+ S++ K
Sbjct: 64 MRDAATKRSRGFGFITYTKSLMVDRAQENRPHIIDGKTVEAKRALPRPERESRETNISVK 123
Query: 58 KIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAK 117
K+FVGG+ + +E+ +++F+QFG+V +++ D +T + RGF F+ FD AVD + K
Sbjct: 124 KLFVGGLKDNHDEECLREYFLQFGNVVSVKLLTDKTTGKRRGFAFVEFDDYDAVDKAILK 183
Query: 118 GNKLELAGAQVEVKKA 133
+ + V+VKK+
Sbjct: 184 -KQHAIKYVHVDVKKS 198
Score = 147 (56.8 bits), Expect = 5.2e-11, Sum P(2) = 5.2e-11
Identities = 33/81 (40%), Positives = 49/81 (60%)
Query: 57 KKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLA 116
+K+F+GG+ E+ K F+ Q+G V + +MRD +T RSRGFGFIT+ VD A
Sbjct: 32 RKLFIGGLAPYTTEENLKLFYGQWGKVVDVVVMRDAATKRSRGFGFITYTKSLMVDR--A 89
Query: 117 KGNKLELA-GAQVEVKKAEPK 136
+ N+ + G VE K+A P+
Sbjct: 90 QENRPHIIDGKTVEAKRALPR 110
Score = 35 (17.4 bits), Expect = 3.2e-22, Sum P(2) = 3.2e-22
Identities = 6/20 (30%), Positives = 10/20 (50%)
Query: 135 PKKPNLPQPSYRRYNNPKPA 154
P + P P++ + P PA
Sbjct: 263 PAPMSAPPPNFNYWGPPPPA 282
>UNIPROTKB|F1NTG9 [details] [associations]
symbol:DAZAP1 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 OMA:HNLDGRN
GeneTree:ENSGT00700000104255 EMBL:AADN02058490 IPI:IPI00577519
Ensembl:ENSGALT00000024525 ArrayExpress:F1NTG9 Uniprot:F1NTG9
Length = 398
Score = 259 (96.2 bits), Expect = 3.6e-22, P = 3.6e-22
Identities = 63/160 (39%), Positives = 92/160 (57%)
Query: 1 MKDRKTGQPRGFGFVTYADPSVVDKVIEDT-HIINGKQVEIKRTIPKGAV---------- 49
MKD+ T Q RGFGFV + DP+ V V+ H ++G+ ++ K P+G
Sbjct: 32 MKDKTTNQSRGFGFVKFKDPNCVGTVLASRPHTLDGRNIDPKPCTPRGMQPERTRPKEGW 91
Query: 50 --GSK--DFKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITF 105
GS+ + K+ KIFVGGIP + E E +++F +FG V E ++ D R RGFGFITF
Sbjct: 92 QKGSRSDNNKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITF 151
Query: 106 DTEQAVDDLLAKGNKLELAGAQVEVKKAEPK--KPNLPQP 143
+ EQ+VD + + ++ G +VEVK+AEP+ K P P
Sbjct: 152 EDEQSVDQAVNM-HFHDIMGKKVEVKRAEPRDSKSQTPGP 190
Score = 142 (55.0 bits), Expect = 4.1e-09, P = 4.1e-09
Identities = 30/88 (34%), Positives = 50/88 (56%)
Query: 58 KIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAK 117
K+FVGG+ S ++ + +F Q+G+V + IM+D +T++SRGFGF+ F V +LA
Sbjct: 1 KLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS 60
Query: 118 GNKLELAGAQVEVKKAEPK--KPNLPQP 143
L G ++ K P+ +P +P
Sbjct: 61 -RPHTLDGRNIDPKPCTPRGMQPERTRP 87
>ZFIN|ZDB-GENE-040426-2717 [details] [associations]
symbol:hnrpdl "heterogeneous nuclear
ribonucleoprotein D-like" species:7955 "Danio rerio" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0030529 "ribonucleoprotein complex"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-040426-2717
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0030529
eggNOG:COG0724 HOGENOM:HOG000234441 HOVERGEN:HBG002295 HSSP:Q14103
CTD:9987 GeneTree:ENSGT00700000104347 KO:K13044 OMA:QHPPADN
OrthoDB:EOG49W2FZ EMBL:CR847788 EMBL:BC055525 IPI:IPI00500216
RefSeq:NP_998557.1 UniGene:Dr.75234 SMR:Q7SXN2 STRING:Q7SXN2
Ensembl:ENSDART00000020631 GeneID:406701 KEGG:dre:406701
InParanoid:Q7SXN2 NextBio:20818224 Uniprot:Q7SXN2
Length = 296
Score = 227 (85.0 bits), Expect = 6.0e-22, Sum P(2) = 6.0e-22
Identities = 48/136 (35%), Positives = 82/136 (60%)
Query: 3 DRKTGQPRGFGFVTYADPSVVDKVIEDT-HIINGKQVEIKRTIPKGAVGSKDFKTKKIFV 61
D TG+ RGFGFV + D VD+V+E T H ++GK ++ KR A+ K+ KK+FV
Sbjct: 64 DPLTGRSRGFGFVLFKDAESVDRVLELTEHKLDGKLIDPKRA---KAIKGKE-PPKKVFV 119
Query: 62 GGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKL 121
GG+ + E++ +++F +G+++ ++ D T+ RGF F+TF E+ V LL +
Sbjct: 120 GGLSPDITEEQLREYFGVYGEIESIELPTDTKTNERRGFCFVTFALEEPVQKLL-ENRYH 178
Query: 122 ELAGAQVEVKKAEPKK 137
++ + E+K A+PK+
Sbjct: 179 QIGSGKCEIKVAQPKE 194
Score = 128 (50.1 bits), Expect = 1.1e-08, Sum P(2) = 1.1e-08
Identities = 28/84 (33%), Positives = 48/84 (57%)
Query: 58 KIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAK 117
K+F+GG+ ++ + D+ +FG+V + I D T RSRGFGF+ F ++VD +L
Sbjct: 31 KMFIGGLSWDTSKKDLTDYLSRFGEVLDCTIKTDPLTGRSRGFGFVLFKDAESVDRVLEL 90
Query: 118 GNKLELAGAQVEVKKAEPKKPNLP 141
+ +L G ++ K+A+ K P
Sbjct: 91 -TEHKLDGKLIDPKRAKAIKGKEP 113
Score = 43 (20.2 bits), Expect = 6.0e-22, Sum P(2) = 6.0e-22
Identities = 8/14 (57%), Positives = 10/14 (71%)
Query: 231 GYSGRYGGFNRGYD 244
G GR GFN+GY+
Sbjct: 215 GRGGRGQGFNQGYN 228
Score = 36 (17.7 bits), Expect = 3.2e-21, Sum P(2) = 3.2e-21
Identities = 6/14 (42%), Positives = 10/14 (71%)
Query: 231 GYSGRYGGFNRGYD 244
GY+ + G+ +GYD
Sbjct: 257 GYNYQNYGYGQGYD 270
>ZFIN|ZDB-GENE-030131-185 [details] [associations]
symbol:hnrnpab "heterogeneous nuclear
ribonucleoprotein A/B" species:7955 "Danio rerio" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0030529 "ribonucleoprotein complex"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-030131-185
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104347 InterPro:IPR012956 Pfam:PF08143
EMBL:CU658205 IPI:IPI01023938 Ensembl:ENSDART00000148447
ArrayExpress:F8W4E3 Uniprot:F8W4E3
Length = 366
Score = 232 (86.7 bits), Expect = 6.8e-22, Sum P(2) = 6.8e-22
Identities = 53/144 (36%), Positives = 86/144 (59%)
Query: 3 DRKTGQPRGFGFVTYADPSVVDKVI-EDTHIINGKQVEIKRTIPKGAVGSKDFKTKKIFV 61
D TG+ RGFGF+ + +PS VDKV+ + H ++G+Q++ PK A+ K KKIFV
Sbjct: 129 DPNTGRSRGFGFILFKEPSGVDKVLAQKEHRLDGRQID-----PKKAMAMKKEPVKKIFV 183
Query: 62 GGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAK---- 117
GG+ E+ +++F FG+++ ++ D +++ RGF FITF E+AV +L K
Sbjct: 184 GGLNPETTEERIREYFGAFGEIETIELPMDPKSNKRRGFVFITFKEEEAVKKILEKKYHN 243
Query: 118 --GNKLELAGAQ--VEVKKAEPKK 137
G K + +G + E+K A+PK+
Sbjct: 244 VSGTK-DTSGKEGLCEIKIAQPKE 266
Score = 158 (60.7 bits), Expect = 2.9e-13, Sum P(2) = 2.9e-13
Identities = 34/80 (42%), Positives = 49/80 (61%)
Query: 58 KIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAK 117
K+FVGG+ ++ + KD+F +FG+V + I D +T RSRGFGFI F VD +LA+
Sbjct: 96 KMFVGGLSWDTSKKDLKDYFSKFGEVTDCTIKMDPNTGRSRGFGFILFKEPSGVDKVLAQ 155
Query: 118 GNKLELAGAQVEVKKAEPKK 137
+ L G Q++ KKA K
Sbjct: 156 -KEHRLDGRQIDPKKAMAMK 174
Score = 41 (19.5 bits), Expect = 6.8e-22, Sum P(2) = 6.8e-22
Identities = 7/11 (63%), Positives = 8/11 (72%)
Query: 232 YSGRYGGFNRG 242
Y GR+GG RG
Sbjct: 273 YGGRFGGGGRG 283
Score = 39 (18.8 bits), Expect = 1.1e-21, Sum P(2) = 1.1e-21
Identities = 8/14 (57%), Positives = 10/14 (71%)
Query: 231 GYSGRYGGF--NRG 242
GY G YGG+ N+G
Sbjct: 333 GYYGGYGGYDYNQG 346
Score = 38 (18.4 bits), Expect = 1.4e-21, Sum P(2) = 1.4e-21
Identities = 9/14 (64%), Positives = 10/14 (71%)
Query: 232 YSGRY-GGFNRGYD 244
YSG Y GG+ GYD
Sbjct: 330 YSGGYYGGYG-GYD 342
>UNIPROTKB|E1BAK6 [details] [associations]
symbol:DAZAP1 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 OMA:HNLDGRN GeneTree:ENSGT00700000104255
EMBL:DAAA02020260 IPI:IPI00701555 Ensembl:ENSBTAT00000026274
Uniprot:E1BAK6
Length = 396
Score = 256 (95.2 bits), Expect = 7.9e-22, P = 7.9e-22
Identities = 64/168 (38%), Positives = 95/168 (56%)
Query: 1 MKDRKTGQPRGFGFVTYADPSVVDKVIEDT-HIINGKQVEIKRTIPKGAV--------G- 50
MKD+ T Q RGFGFV + DP+ V V+ H ++G+ ++ K P+G G
Sbjct: 32 MKDKTTNQSRGFGFVKFKDPNCVGTVLASRPHTLDGRNIDPKPCTPRGMQPERTRPKEGW 91
Query: 51 -----SKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITF 105
S + K+ KIFVGGIP + E E +++F +FG V E ++ D R RGFGFITF
Sbjct: 92 QKGPRSDNSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITF 151
Query: 106 DTEQAVDDLLAKGNKLELAGAQVEVKKAEPK--KPNLP-QPSYRRYNN 150
+ EQ+VD + + ++ G +VEVK+AEP+ K P QP ++ +
Sbjct: 152 EDEQSVDQAVNM-HFHDIMGKKVEVKRAEPRDSKSQAPGQPGASQWGS 198
Score = 143 (55.4 bits), Expect = 3.1e-09, P = 3.1e-09
Identities = 31/97 (31%), Positives = 52/97 (53%)
Query: 58 KIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAK 117
K+FVGG+ S ++ + +F Q+G+V + IM+D +T++SRGFGF+ F V +LA
Sbjct: 1 KLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS 60
Query: 118 GNKLELAGAQVEVKKAEPK--KPNLPQPSYRRYNNPK 152
L G ++ K P+ +P +P P+
Sbjct: 61 -RPHTLDGRNIDPKPCTPRGMQPERTRPKEGWQKGPR 96
>UNIPROTKB|K7EQ02 [details] [associations]
symbol:DAZAP1 "DAZ-associated protein 1" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
Gene3D:3.30.70.330 HGNC:HGNC:2683 EMBL:AC005329 EMBL:AC027307
Ensembl:ENST00000592453 Uniprot:K7EQ02
Length = 225
Score = 254 (94.5 bits), Expect = 9.0e-22, P = 9.0e-22
Identities = 62/154 (40%), Positives = 90/154 (58%)
Query: 1 MKDRKTGQPRGFGFVTYADPSVVDKVIEDT-HIINGKQVEIKRTIPKGAVGSKDFKTKKI 59
MKD+ T Q RGFGFV + DP+ V V+ H ++G+ KG S + K+ KI
Sbjct: 42 MKDKTTNQSRGFGFVKFKDPNCVGTVLASRPHTLDGRN-------QKGP-RSDNSKSNKI 93
Query: 60 FVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGN 119
FVGGIP + E E +++F +FG V E ++ D R RGFGFITF+ EQ+VD + +
Sbjct: 94 FVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVNM-H 152
Query: 120 KLELAGAQVEVKKAEPK--KPNLP-QPSYRRYNN 150
++ G +VEVK+AEP+ K P QP ++ +
Sbjct: 153 FHDIMGKKVEVKRAEPRDSKSQAPGQPGASQWGS 186
Score = 133 (51.9 bits), Expect = 1.6e-08, P = 1.6e-08
Identities = 28/82 (34%), Positives = 47/82 (57%)
Query: 58 KIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAK 117
K+FVGG+ S ++ + +F Q+G+V + IM+D +T++SRGFGF+ F V +LA
Sbjct: 11 KLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS 70
Query: 118 GNKLELAGAQVEVKKAEPKKPN 139
L G + +++ K N
Sbjct: 71 -RPHTLDGRNQKGPRSDNSKSN 91
>UNIPROTKB|I3LB68 [details] [associations]
symbol:DAZAP1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 CTD:26528 KO:K14411 OMA:HNLDGRN
GeneTree:ENSGT00700000104255 EMBL:FP325262 RefSeq:NP_001231435.1
UniGene:Ssc.1299 Ensembl:ENSSSCT00000023438 GeneID:100625005
KEGG:ssc:100625005 Uniprot:I3LB68
Length = 406
Score = 256 (95.2 bits), Expect = 9.6e-22, P = 9.6e-22
Identities = 64/168 (38%), Positives = 95/168 (56%)
Query: 1 MKDRKTGQPRGFGFVTYADPSVVDKVIEDT-HIINGKQVEIKRTIPKGAV--------G- 50
MKD+ T Q RGFGFV + DP+ V V+ H ++G+ ++ K P+G G
Sbjct: 42 MKDKTTNQSRGFGFVKFKDPNCVGTVLASRPHTLDGRNIDPKPCTPRGMQPERTRPKEGW 101
Query: 51 -----SKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITF 105
S + K+ KIFVGGIP + E E +++F +FG V E ++ D R RGFGFITF
Sbjct: 102 QKGPRSDNSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITF 161
Query: 106 DTEQAVDDLLAKGNKLELAGAQVEVKKAEPK--KPNLP-QPSYRRYNN 150
+ EQ+VD + + ++ G +VEVK+AEP+ K P QP ++ +
Sbjct: 162 EDEQSVDQAVNM-HFHDIMGKKVEVKRAEPRDSKSQAPGQPGASQWGS 208
Score = 143 (55.4 bits), Expect = 3.3e-09, P = 3.3e-09
Identities = 31/97 (31%), Positives = 52/97 (53%)
Query: 58 KIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAK 117
K+FVGG+ S ++ + +F Q+G+V + IM+D +T++SRGFGF+ F V +LA
Sbjct: 11 KLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS 70
Query: 118 GNKLELAGAQVEVKKAEPK--KPNLPQPSYRRYNNPK 152
L G ++ K P+ +P +P P+
Sbjct: 71 -RPHTLDGRNIDPKPCTPRGMQPERTRPKEGWQKGPR 106
>UNIPROTKB|E2R6E4 [details] [associations]
symbol:DAZAP1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 CTD:26528 KO:K14411 OMA:HNLDGRN
GeneTree:ENSGT00700000104255 EMBL:AAEX03012650 EMBL:AAEX03012651
RefSeq:XP_003432858.1 Ensembl:ENSCAFT00000031038 GeneID:100683271
KEGG:cfa:100683271 Uniprot:E2R6E4
Length = 407
Score = 256 (95.2 bits), Expect = 9.7e-22, P = 9.7e-22
Identities = 64/168 (38%), Positives = 95/168 (56%)
Query: 1 MKDRKTGQPRGFGFVTYADPSVVDKVIEDT-HIINGKQVEIKRTIPKGAV--------G- 50
MKD+ T Q RGFGFV + DP+ V V+ H ++G+ ++ K P+G G
Sbjct: 42 MKDKTTNQSRGFGFVKFKDPNCVGTVLASRPHTLDGRNIDPKPCTPRGMQPERTRPKEGW 101
Query: 51 -----SKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITF 105
S + K+ KIFVGGIP + E E +++F +FG V E ++ D R RGFGFITF
Sbjct: 102 QKGPRSDNSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITF 161
Query: 106 DTEQAVDDLLAKGNKLELAGAQVEVKKAEPK--KPNLP-QPSYRRYNN 150
+ EQ+VD + + ++ G +VEVK+AEP+ K P QP ++ +
Sbjct: 162 EDEQSVDQAVNM-HFHDIMGKKVEVKRAEPRDSKSQAPGQPGASQWGS 208
Score = 143 (55.4 bits), Expect = 3.3e-09, P = 3.3e-09
Identities = 31/97 (31%), Positives = 52/97 (53%)
Query: 58 KIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAK 117
K+FVGG+ S ++ + +F Q+G+V + IM+D +T++SRGFGF+ F V +LA
Sbjct: 11 KLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS 70
Query: 118 GNKLELAGAQVEVKKAEPK--KPNLPQPSYRRYNNPK 152
L G ++ K P+ +P +P P+
Sbjct: 71 -RPHTLDGRNIDPKPCTPRGMQPERTRPKEGWQKGPR 106
>UNIPROTKB|Q96EP5 [details] [associations]
symbol:DAZAP1 "DAZ-associated protein 1" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0007275 "multicellular organismal
development" evidence=IEA] [GO:0007283 "spermatogenesis"
evidence=IEA] [GO:0030154 "cell differentiation" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0007275 GO:GO:0005634 GO:GO:0005737
GO:GO:0030154 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0007283
GO:GO:0003723 eggNOG:COG0724 EMBL:AF181719 EMBL:BC012062
EMBL:AK056850 IPI:IPI00165230 IPI:IPI00335930 RefSeq:NP_061832.2
RefSeq:NP_733829.1 UniGene:Hs.222510 PDB:2DGS PDB:2DH8 PDBsum:2DGS
PDBsum:2DH8 ProteinModelPortal:Q96EP5 SMR:Q96EP5 IntAct:Q96EP5
STRING:Q96EP5 PhosphoSite:Q96EP5 DMDM:44887869
REPRODUCTION-2DPAGE:IPI00165230 PaxDb:Q96EP5 PRIDE:Q96EP5
DNASU:26528 Ensembl:ENST00000233078 Ensembl:ENST00000336761
GeneID:26528 KEGG:hsa:26528 UCSC:uc002lsm.3 UCSC:uc002lsn.3
CTD:26528 GeneCards:GC19P001407 HGNC:HGNC:2683 HPA:HPA004201
HPA:HPA004631 MIM:607430 neXtProt:NX_Q96EP5 PharmGKB:PA27153
HOGENOM:HOG000234441 HOVERGEN:HBG002295 InParanoid:Q96EP5 KO:K14411
OMA:HNLDGRN OrthoDB:EOG40ZQXT PhylomeDB:Q96EP5 ChiTaRS:DAZAP1
EvolutionaryTrace:Q96EP5 GenomeRNAi:26528 NextBio:48864
ArrayExpress:Q96EP5 Bgee:Q96EP5 CleanEx:HS_DAZAP1
Genevestigator:Q96EP5 GermOnline:ENSG00000071626 Uniprot:Q96EP5
Length = 407
Score = 256 (95.2 bits), Expect = 9.7e-22, P = 9.7e-22
Identities = 64/168 (38%), Positives = 95/168 (56%)
Query: 1 MKDRKTGQPRGFGFVTYADPSVVDKVIEDT-HIINGKQVEIKRTIPKGAV--------G- 50
MKD+ T Q RGFGFV + DP+ V V+ H ++G+ ++ K P+G G
Sbjct: 42 MKDKTTNQSRGFGFVKFKDPNCVGTVLASRPHTLDGRNIDPKPCTPRGMQPERTRPKEGW 101
Query: 51 -----SKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITF 105
S + K+ KIFVGGIP + E E +++F +FG V E ++ D R RGFGFITF
Sbjct: 102 QKGPRSDNSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITF 161
Query: 106 DTEQAVDDLLAKGNKLELAGAQVEVKKAEPK--KPNLP-QPSYRRYNN 150
+ EQ+VD + + ++ G +VEVK+AEP+ K P QP ++ +
Sbjct: 162 EDEQSVDQAVNM-HFHDIMGKKVEVKRAEPRDSKSQAPGQPGASQWGS 208
Score = 143 (55.4 bits), Expect = 3.3e-09, P = 3.3e-09
Identities = 31/97 (31%), Positives = 52/97 (53%)
Query: 58 KIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAK 117
K+FVGG+ S ++ + +F Q+G+V + IM+D +T++SRGFGF+ F V +LA
Sbjct: 11 KLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS 70
Query: 118 GNKLELAGAQVEVKKAEPK--KPNLPQPSYRRYNNPK 152
L G ++ K P+ +P +P P+
Sbjct: 71 -RPHTLDGRNIDPKPCTPRGMQPERTRPKEGWQKGPR 106
>UNIPROTKB|Q98SJ2 [details] [associations]
symbol:dazap1 "DAZ-associated protein 1" species:8355
"Xenopus laevis" [GO:0003723 "RNA binding" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0007275 GO:GO:0005737 GO:GO:0030154
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0048477 GO:GO:0003723
CTD:26528 HOVERGEN:HBG002295 KO:K14411 EMBL:AY028920
RefSeq:NP_001082088.1 UniGene:Xl.1666 ProteinModelPortal:Q98SJ2
SMR:Q98SJ2 GeneID:398218 KEGG:xla:398218 Xenbase:XB-GENE-864805
Uniprot:Q98SJ2
Length = 360
Score = 253 (94.1 bits), Expect = 1.1e-21, P = 1.1e-21
Identities = 64/161 (39%), Positives = 92/161 (57%)
Query: 1 MKDRKTGQPRGFGFVTYADPSVVDKVIEDT-HIINGKQVEIKRTIPKGAV--------G- 50
MKD+ T Q RGFGFV + DP+ V V+ H ++G+ ++ K P+G G
Sbjct: 42 MKDKTTNQSRGFGFVKFKDPNCVGTVLASRPHTLDGRNIDPKPCTPRGMQPERSRPREGW 101
Query: 51 -SKDFKTK-----KIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFIT 104
K+ +T+ KIFVGGIP + E E K++F +FG V E ++ D R RGFGFIT
Sbjct: 102 QQKEPRTENSRSNKIFVGGIPHNCGETELKEYFNRFGVVTEVVMIYDAEKQRPRGFGFIT 161
Query: 105 FDTEQAVDDLLAKGNKLELAGAQVEVKKAEPK--KPNLPQP 143
F+ EQ+VD + + ++ G +VEVK+AEP+ K P P
Sbjct: 162 FEDEQSVDQAVNM-HFHDIMGKKVEVKRAEPRDSKSQTPGP 201
Score = 142 (55.0 bits), Expect = 3.3e-09, P = 3.3e-09
Identities = 30/88 (34%), Positives = 50/88 (56%)
Query: 58 KIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAK 117
K+FVGG+ S ++ + +F Q+G+V + IM+D +T++SRGFGF+ F V +LA
Sbjct: 11 KLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS 70
Query: 118 GNKLELAGAQVEVKKAEPK--KPNLPQP 143
L G ++ K P+ +P +P
Sbjct: 71 -RPHTLDGRNIDPKPCTPRGMQPERSRP 97
>MGI|MGI:1917498 [details] [associations]
symbol:Dazap1 "DAZ associated protein 1" species:10090 "Mus
musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0001893 "maternal placenta development" evidence=IMP]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=ISA] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005737 "cytoplasm" evidence=IDA] [GO:0005844 "polysome"
evidence=IDA] [GO:0007275 "multicellular organismal development"
evidence=IEA] [GO:0007283 "spermatogenesis" evidence=IMP]
[GO:0008283 "cell proliferation" evidence=IMP] [GO:0030154 "cell
differentiation" evidence=IEA] [GO:0035613 "RNA stem-loop binding"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 MGI:MGI:1917498 GO:GO:0007275
GO:GO:0005634 GO:GO:0005737 GO:GO:0030154 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0007283 GO:GO:0003723 eggNOG:COG0724
CTD:26528 HOGENOM:HOG000234441 HOVERGEN:HBG002295 KO:K14411
ChiTaRS:DAZAP1 EMBL:AF225910 EMBL:BC049355 IPI:IPI00406492
IPI:IPI00406493 RefSeq:NP_001116076.1 RefSeq:NP_001116077.1
RefSeq:NP_573451.2 UniGene:Mm.148693 ProteinModelPortal:Q9JII5
SMR:Q9JII5 STRING:Q9JII5 PhosphoSite:Q9JII5
REPRODUCTION-2DPAGE:Q9JII5 PaxDb:Q9JII5 PRIDE:Q9JII5
Ensembl:ENSMUST00000092305 Ensembl:ENSMUST00000105362 GeneID:70248
KEGG:mmu:70248 UCSC:uc007gcl.2 UCSC:uc007gcm.2
GeneTree:ENSGT00700000104255 InParanoid:Q9JII5 NextBio:331250
Bgee:Q9JII5 CleanEx:MM_DAZAP1 Genevestigator:Q9JII5
GermOnline:ENSMUSG00000069565 Uniprot:Q9JII5
Length = 406
Score = 254 (94.5 bits), Expect = 1.6e-21, P = 1.6e-21
Identities = 64/168 (38%), Positives = 94/168 (55%)
Query: 1 MKDRKTGQPRGFGFVTYADPSVVDKVIEDT-HIINGKQVEIKRTIPKGAV--------G- 50
MKD+ T Q RGFGFV + DP+ V V+ H ++G+ ++ K P+G G
Sbjct: 42 MKDKTTNQSRGFGFVKFKDPNCVGTVLASRPHTLDGRNIDPKPCTPRGMQPERTRPKEGW 101
Query: 51 -----SKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITF 105
S K+ KIFVGGIP + E E +++F +FG V E ++ D R RGFGFITF
Sbjct: 102 QKGPRSDSSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITF 161
Query: 106 DTEQAVDDLLAKGNKLELAGAQVEVKKAEPK--KPNLP-QPSYRRYNN 150
+ EQ+VD + + ++ G +VEVK+AEP+ K P QP ++ +
Sbjct: 162 EDEQSVDQAVNM-HFHDIMGKKVEVKRAEPRDSKNQAPGQPGASQWGS 208
Score = 143 (55.4 bits), Expect = 3.3e-09, P = 3.3e-09
Identities = 31/97 (31%), Positives = 52/97 (53%)
Query: 58 KIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAK 117
K+FVGG+ S ++ + +F Q+G+V + IM+D +T++SRGFGF+ F V +LA
Sbjct: 11 KLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS 70
Query: 118 GNKLELAGAQVEVKKAEPK--KPNLPQPSYRRYNNPK 152
L G ++ K P+ +P +P P+
Sbjct: 71 -RPHTLDGRNIDPKPCTPRGMQPERTRPKEGWQKGPR 106
>UNIPROTKB|F2Z3S1 [details] [associations]
symbol:Dazap1 "Protein Dazap1" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:1305280 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104255 IPI:IPI00365961
ProteinModelPortal:F2Z3S1 SMR:F2Z3S1 PRIDE:F2Z3S1
Ensembl:ENSRNOT00000046886 Uniprot:F2Z3S1
Length = 406
Score = 254 (94.5 bits), Expect = 1.6e-21, P = 1.6e-21
Identities = 64/168 (38%), Positives = 94/168 (55%)
Query: 1 MKDRKTGQPRGFGFVTYADPSVVDKVIEDT-HIINGKQVEIKRTIPKGAV--------G- 50
MKD+ T Q RGFGFV + DP+ V V+ H ++G+ ++ K P+G G
Sbjct: 42 MKDKTTNQSRGFGFVKFKDPNCVGTVLASRPHTLDGRNIDPKPCTPRGMQPERTRPKEGW 101
Query: 51 -----SKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITF 105
S K+ KIFVGGIP + E E +++F +FG V E ++ D R RGFGFITF
Sbjct: 102 QKGPRSDSSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITF 161
Query: 106 DTEQAVDDLLAKGNKLELAGAQVEVKKAEPK--KPNLP-QPSYRRYNN 150
+ EQ+VD + + ++ G +VEVK+AEP+ K P QP ++ +
Sbjct: 162 EDEQSVDQAVNM-HFHDIMGKKVEVKRAEPRDSKNQAPGQPGASQWGS 208
Score = 143 (55.4 bits), Expect = 3.3e-09, P = 3.3e-09
Identities = 31/97 (31%), Positives = 52/97 (53%)
Query: 58 KIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAK 117
K+FVGG+ S ++ + +F Q+G+V + IM+D +T++SRGFGF+ F V +LA
Sbjct: 11 KLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS 70
Query: 118 GNKLELAGAQVEVKKAEPK--KPNLPQPSYRRYNNPK 152
L G ++ K P+ +P +P P+
Sbjct: 71 -RPHTLDGRNIDPKPCTPRGMQPERTRPKEGWQKGPR 106
>WB|WBGene00001999 [details] [associations]
symbol:hrp-1 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0040010
"positive regulation of growth rate" evidence=IMP] [GO:0009792
"embryo development ending in birth or egg hatching" evidence=IMP]
[GO:0040007 "growth" evidence=IMP] [GO:0002119 "nematode larval
development" evidence=IMP] [GO:0008340 "determination of adult
lifespan" evidence=IMP] [GO:0040015 "negative regulation of
multicellular organism growth" evidence=IMP] [GO:0048477
"oogenesis" evidence=IMP] [GO:0000003 "reproduction" evidence=IMP]
[GO:0002009 "morphogenesis of an epithelium" evidence=IMP]
[GO:0040035 "hermaphrodite genitalia development" evidence=IMP]
[GO:0000781 "chromosome, telomeric region" evidence=IDA]
[GO:0031581 "hemidesmosome assembly" evidence=IGI] [GO:0000398
"mRNA splicing, via spliceosome" evidence=ISS] [GO:0003723 "RNA
binding" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0008340 GO:GO:0009792 GO:GO:0002009 GO:GO:0040007
GO:GO:0040010 GO:GO:0002119 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0048477 GO:GO:0003723 GO:GO:0040035 GO:GO:0030529
GO:GO:0040015 GO:GO:0000398 GO:GO:0000781 eggNOG:COG0724
GO:GO:0031581 GeneTree:ENSGT00700000104255 KO:K12741 EMBL:D10877
EMBL:FO081370 PIR:S35500 RefSeq:NP_001023199.1
RefSeq:NP_001040944.1 RefSeq:NP_001040945.1 RefSeq:NP_500326.2
UniGene:Cel.7537 ProteinModelPortal:Q22037 SMR:Q22037 IntAct:Q22037
STRING:Q22037 PaxDb:Q22037 PRIDE:Q22037 EnsemblMetazoa:F42A6.7a.1
EnsemblMetazoa:F42A6.7a.2 GeneID:177101 KEGG:cel:CELE_F42A6.7
UCSC:F42A6.7a.1 CTD:177101 WormBase:F42A6.7a WormBase:F42A6.7b
WormBase:F42A6.7c WormBase:F42A6.7d InParanoid:Q22037 OMA:YGGGWGQ
NextBio:895332 Uniprot:Q22037
Length = 346
Score = 228 (85.3 bits), Expect = 3.0e-21, Sum P(2) = 3.0e-21
Identities = 47/139 (33%), Positives = 82/139 (58%)
Query: 1 MKDRKTGQPRGFGFVTYADPSVVDKVIEDT-HIINGKQVEIKRTIPKGAVGSKD--FKTK 57
M+D T + RGFGFVT++ + VD ++ HII+GK V+ KR +P+ + TK
Sbjct: 55 MRDPTTKRSRGFGFVTFSGKTEVDAAMKQRPHIIDGKTVDPKRAVPRDDKNRSESNVSTK 114
Query: 58 KIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAK 117
+++V G+ ED ++F ++G V + +I+ D +T + RGFGF+TFD +VD + +
Sbjct: 115 RLYVSGVREDHTEDMLTEYFTKYGTVTKSEIILDKATQKPRGFGFVTFDDHDSVDQCVLQ 174
Query: 118 GNKLELAGAQVEVKKAEPK 136
+ + + G + +V+K K
Sbjct: 175 KSHM-VNGHRCDVRKGLSK 192
Score = 177 (67.4 bits), Expect = 5.0e-15, Sum P(2) = 5.0e-15
Identities = 37/99 (37%), Positives = 59/99 (59%)
Query: 38 VEIKRTIPKGAVGSKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRS 97
VEIK G + +KIFVGG+ S+ +D ++F+ QFG++ + +MRD +T RS
Sbjct: 4 VEIKAENGSGDASLEPENLRKIFVGGLTSNTTDDLMREFYSQFGEITDIIVMRDPTTKRS 63
Query: 98 RGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVKKAEPK 136
RGFGF+TF + VD + + + + G V+ K+A P+
Sbjct: 64 RGFGFVTFSGKTEVDAAMKQRPHI-IDGKTVDPKRAVPR 101
Score = 107 (42.7 bits), Expect = 0.00032, Sum P(2) = 0.00032
Identities = 20/62 (32%), Positives = 37/62 (59%)
Query: 3 DRKTGQPRGFGFVTYADPSVVDK-VIEDTHIINGKQVEIKRTIPKGAVGSKDFKTKKIFV 61
D+ T +PRGFGFVT+ D VD+ V++ +H++NG + ++++ + K + +
Sbjct: 148 DKATQKPRGFGFVTFDDHDSVDQCVLQKSHMVNGHRCDVRKGLSKDEMSKAQMNRDRETR 207
Query: 62 GG 63
GG
Sbjct: 208 GG 209
Score = 36 (17.7 bits), Expect = 3.0e-21, Sum P(2) = 3.0e-21
Identities = 6/8 (75%), Positives = 6/8 (75%)
Query: 231 GYSGRYGG 238
GY G YGG
Sbjct: 251 GYGGDYGG 258
>UNIPROTKB|F1NCW4 [details] [associations]
symbol:HNRNPD "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0030529 "ribonucleoprotein
complex" evidence=IEA] [GO:0042162 "telomeric DNA binding"
evidence=IEA] [GO:0043488 "regulation of mRNA stability"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0030529 GO:GO:0043488 GO:GO:0042162
GeneTree:ENSGT00700000104347 OMA:PNQNWNQ EMBL:AADN02009040
IPI:IPI00819680 Ensembl:ENSGALT00000038011 ArrayExpress:F1NCW4
Uniprot:F1NCW4
Length = 258
Score = 215 (80.7 bits), Expect = 3.2e-21, Sum P(2) = 3.2e-21
Identities = 51/137 (37%), Positives = 82/137 (59%)
Query: 3 DRKTGQPRGFGFVTYADPSVVDKVIEDT-HIINGKQVEIKRTIPKGAVGSKDFKTKKIFV 61
D TG+ RGFGFV + + VDKV++ H +NGK ++ KR A+ +K+ KKIFV
Sbjct: 34 DPITGRSRGFGFVLFKESESVDKVMDQKEHKLNGKVIDPKRA---KAMKTKE-PVKKIFV 89
Query: 62 GGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKL 121
GG+ E++ +++F FG+V+ ++ D+ T++ RGF FITF E+ V ++ K K
Sbjct: 90 GGLSPDTPEEKIREYFGAFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEK--KY 147
Query: 122 ELAG-AQVEVKKAEPKK 137
G ++ E+K A K+
Sbjct: 148 HNVGLSKCEIKVAMSKE 164
Score = 142 (55.0 bits), Expect = 4.7e-13, Sum P(2) = 4.7e-13
Identities = 30/85 (35%), Positives = 50/85 (58%)
Query: 58 KIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLL-A 116
K+F+GG+ + + KD+F +FG+V + + D T RSRGFGF+ F ++VD ++
Sbjct: 1 KMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQ 60
Query: 117 KGNKLELAGAQVEVKKAEPKKPNLP 141
K +KL G ++ K+A+ K P
Sbjct: 61 KEHKLN--GKVIDPKRAKAMKTKEP 83
Score = 48 (22.0 bits), Expect = 3.2e-21, Sum P(2) = 3.2e-21
Identities = 10/18 (55%), Positives = 13/18 (72%)
Query: 231 GYSGR-YGGFNRGYDVTG 247
GY+ + YGG+ GYD TG
Sbjct: 209 GYNSQGYGGYG-GYDYTG 225
>UNIPROTKB|Q5ZIH1 [details] [associations]
symbol:HNRNPD "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0030529 "ribonucleoprotein
complex" evidence=IEA] [GO:0042162 "telomeric DNA binding"
evidence=IEA] [GO:0043488 "regulation of mRNA stability"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0030529 GO:GO:0043488 GO:GO:0042162
eggNOG:COG0724 HOGENOM:HOG000234441 HOVERGEN:HBG002295
UniGene:Gga.4605 GeneTree:ENSGT00700000104347 KO:K13044
OrthoDB:EOG49W2FZ CTD:3184 OMA:PNQNWNQ EMBL:AADN02009040
EMBL:AJ720813 IPI:IPI00597667 RefSeq:NP_001026314.1 SMR:Q5ZIH1
STRING:Q5ZIH1 Ensembl:ENSGALT00000018234 GeneID:422602
KEGG:gga:422602 InParanoid:Q5ZIH1 NextBio:20825212 Uniprot:Q5ZIH1
Length = 257
Score = 215 (80.7 bits), Expect = 3.2e-21, Sum P(2) = 3.2e-21
Identities = 51/137 (37%), Positives = 82/137 (59%)
Query: 3 DRKTGQPRGFGFVTYADPSVVDKVIEDT-HIINGKQVEIKRTIPKGAVGSKDFKTKKIFV 61
D TG+ RGFGFV + + VDKV++ H +NGK ++ KR A+ +K+ KKIFV
Sbjct: 33 DPITGRSRGFGFVLFKESESVDKVMDQKEHKLNGKVIDPKRA---KAMKTKE-PVKKIFV 88
Query: 62 GGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKL 121
GG+ E++ +++F FG+V+ ++ D+ T++ RGF FITF E+ V ++ K K
Sbjct: 89 GGLSPDTPEEKIREYFGAFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEK--KY 146
Query: 122 ELAG-AQVEVKKAEPKK 137
G ++ E+K A K+
Sbjct: 147 HNVGLSKCEIKVAMSKE 163
Score = 137 (53.3 bits), Expect = 1.8e-12, Sum P(2) = 1.8e-12
Identities = 29/84 (34%), Positives = 49/84 (58%)
Query: 59 IFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLL-AK 117
+F+GG+ + + KD+F +FG+V + + D T RSRGFGF+ F ++VD ++ K
Sbjct: 1 MFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQK 60
Query: 118 GNKLELAGAQVEVKKAEPKKPNLP 141
+KL G ++ K+A+ K P
Sbjct: 61 EHKLN--GKVIDPKRAKAMKTKEP 82
Score = 48 (22.0 bits), Expect = 3.2e-21, Sum P(2) = 3.2e-21
Identities = 10/18 (55%), Positives = 13/18 (72%)
Query: 231 GYSGR-YGGFNRGYDVTG 247
GY+ + YGG+ GYD TG
Sbjct: 208 GYNSQGYGGYG-GYDYTG 224
>UNIPROTKB|G3V6A5 [details] [associations]
symbol:Hnrpd "Heterogeneous nuclear ribonucleoprotein D,
isoform CRA_c" species:10116 "Rattus norvegicus" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0030529 "ribonucleoprotein complex"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 RGD:620365 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0030529
GeneTree:ENSGT00700000104347 KO:K13044 InterPro:IPR012956
Pfam:PF08143 RefSeq:NP_001076008.1 UniGene:Rn.94022 GeneID:79256
KEGG:rno:79256 CTD:79256 NextBio:614748 EMBL:CH474022
Ensembl:ENSRNOT00000003173 Uniprot:G3V6A5
Length = 334
Score = 214 (80.4 bits), Expect = 3.3e-21, Sum P(2) = 3.3e-21
Identities = 51/137 (37%), Positives = 82/137 (59%)
Query: 3 DRKTGQPRGFGFVTYADPSVVDKVIEDT-HIINGKQVEIKRTIPKGAVGSKDFKTKKIFV 61
D TG+ RGFGFV + + VDKV++ H +NGK ++ KR A+ +K+ KKIFV
Sbjct: 110 DPITGRSRGFGFVLFKESESVDKVMDQKEHKLNGKVIDPKRA---KAMKTKE-PVKKIFV 165
Query: 62 GGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKL 121
GG+ E++ +++F FG+V+ ++ D+ T++ RGF FITF E+ V ++ K K
Sbjct: 166 GGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEK--KY 223
Query: 122 ELAG-AQVEVKKAEPKK 137
G ++ E+K A K+
Sbjct: 224 HNVGLSKCEIKVAMSKE 240
Score = 146 (56.5 bits), Expect = 3.8e-13, Sum P(2) = 3.8e-13
Identities = 31/85 (36%), Positives = 50/85 (58%)
Query: 58 KIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLL-A 116
K+F+GG+ + + KD+F +FGDV + + D T RSRGFGF+ F ++VD ++
Sbjct: 77 KMFIGGLSWDTTKKDLKDYFSKFGDVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQ 136
Query: 117 KGNKLELAGAQVEVKKAEPKKPNLP 141
K +KL G ++ K+A+ K P
Sbjct: 137 KEHKLN--GKVIDPKRAKAMKTKEP 159
Score = 51 (23.0 bits), Expect = 3.3e-21, Sum P(2) = 3.3e-21
Identities = 11/20 (55%), Positives = 14/20 (70%)
Query: 229 SLGYSGR-YGGFNRGYDVTG 247
S GY+ + YGG+ GYD TG
Sbjct: 283 SYGYNSQGYGGYG-GYDYTG 301
>UNIPROTKB|B4DTC3 [details] [associations]
symbol:HNRNPD "cDNA FLJ54150, highly similar to
Heterogeneous nuclear ribonucleoprotein D0" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0030529 "ribonucleoprotein
complex" evidence=IEA] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005730 "nucleolus" evidence=IDA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0030529 HOGENOM:HOG000234441 HOVERGEN:HBG002295 EMBL:AC124016
UniGene:Hs.480073 HGNC:HGNC:5036 ChiTaRS:HNRNPD InterPro:IPR012956
Pfam:PF08143 EMBL:AK300149 IPI:IPI01014602 SMR:B4DTC3 STRING:B4DTC3
Ensembl:ENST00000543098 Uniprot:B4DTC3
Length = 303
Score = 214 (80.4 bits), Expect = 4.1e-21, Sum P(2) = 4.1e-21
Identities = 51/137 (37%), Positives = 82/137 (59%)
Query: 3 DRKTGQPRGFGFVTYADPSVVDKVIEDT-HIINGKQVEIKRTIPKGAVGSKDFKTKKIFV 61
D TG+ RGFGFV + + VDKV++ H +NGK ++ KR A+ +K+ KKIFV
Sbjct: 79 DPITGRSRGFGFVLFKESESVDKVMDQKEHKLNGKVIDPKRA---KAMKTKE-PVKKIFV 134
Query: 62 GGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKL 121
GG+ E++ +++F FG+V+ ++ D+ T++ RGF FITF E+ V ++ K K
Sbjct: 135 GGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEK--KY 192
Query: 122 ELAG-AQVEVKKAEPKK 137
G ++ E+K A K+
Sbjct: 193 HNVGLSKCEIKVAMSKE 209
Score = 142 (55.0 bits), Expect = 1.3e-12, Sum P(2) = 1.3e-12
Identities = 30/85 (35%), Positives = 50/85 (58%)
Query: 58 KIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLL-A 116
K+F+GG+ + + KD+F +FG+V + + D T RSRGFGF+ F ++VD ++
Sbjct: 46 KMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQ 105
Query: 117 KGNKLELAGAQVEVKKAEPKKPNLP 141
K +KL G ++ K+A+ K P
Sbjct: 106 KEHKLN--GKVIDPKRAKAMKTKEP 128
Score = 48 (22.0 bits), Expect = 4.1e-21, Sum P(2) = 4.1e-21
Identities = 10/18 (55%), Positives = 13/18 (72%)
Query: 231 GYSGR-YGGFNRGYDVTG 247
GY+ + YGG+ GYD TG
Sbjct: 254 GYNSQGYGGYG-GYDYTG 270
>UNIPROTKB|H0Y8G5 [details] [associations]
symbol:HNRNPD "Heterogeneous nuclear ribonucleoprotein D0"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC124016 HGNC:HGNC:5036
ChiTaRS:HNRNPD Ensembl:ENST00000509263 Bgee:H0Y8G5 Uniprot:H0Y8G5
Length = 261
Score = 214 (80.4 bits), Expect = 4.1e-21, Sum P(2) = 4.1e-21
Identities = 51/137 (37%), Positives = 82/137 (59%)
Query: 3 DRKTGQPRGFGFVTYADPSVVDKVIEDT-HIINGKQVEIKRTIPKGAVGSKDFKTKKIFV 61
D TG+ RGFGFV + + VDKV++ H +NGK ++ KR A+ +K+ KKIFV
Sbjct: 64 DPITGRSRGFGFVLFKESESVDKVMDQKEHKLNGKVIDPKRA---KAMKTKE-PVKKIFV 119
Query: 62 GGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKL 121
GG+ E++ +++F FG+V+ ++ D+ T++ RGF FITF E+ V ++ K K
Sbjct: 120 GGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEK--KY 177
Query: 122 ELAG-AQVEVKKAEPKK 137
G ++ E+K A K+
Sbjct: 178 HNVGLSKCEIKVAMSKE 194
Score = 142 (55.0 bits), Expect = 5.1e-13, Sum P(2) = 5.1e-13
Identities = 30/85 (35%), Positives = 50/85 (58%)
Query: 58 KIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLL-A 116
K+F+GG+ + + KD+F +FG+V + + D T RSRGFGF+ F ++VD ++
Sbjct: 31 KMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQ 90
Query: 117 KGNKLELAGAQVEVKKAEPKKPNLP 141
K +KL G ++ K+A+ K P
Sbjct: 91 KEHKLN--GKVIDPKRAKAMKTKEP 113
Score = 48 (22.0 bits), Expect = 4.1e-21, Sum P(2) = 4.1e-21
Identities = 10/18 (55%), Positives = 13/18 (72%)
Query: 231 GYSGR-YGGFNRGYDVTG 247
GY+ + YGG+ GYD TG
Sbjct: 239 GYNSQGYGGYG-GYDYTG 255
>UNIPROTKB|P09867 [details] [associations]
symbol:HNRNPA1 "Heterogeneous nuclear ribonucleoprotein A1"
species:9913 "Bos taurus" [GO:0030529 "ribonucleoprotein complex"
evidence=ISS] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0000380
"alternative mRNA splicing, via spliceosome" evidence=IEA]
[GO:0051028 "mRNA transport" evidence=IEA] [GO:0005681
"spliceosomal complex" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005737 GO:GO:0005654 GO:GO:0005730
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0003697
GO:GO:0030529 GO:GO:0051028 GO:GO:0071013 GO:GO:0051168
eggNOG:COG0724 GO:GO:0000380 HOVERGEN:HBG002295 GO:GO:0051170
HOGENOM:HOG000234442 KO:K12741 OrthoDB:EOG4HQDKF InterPro:IPR021662
Pfam:PF11627 EMBL:BC105413 IPI:IPI00692235 PIR:A27241
RefSeq:NP_001039376.1 UniGene:Bt.88002 ProteinModelPortal:P09867
SMR:P09867 STRING:P09867 PRIDE:P09867 Ensembl:ENSBTAT00000002033
GeneID:505093 KEGG:bta:505093 CTD:3178 GeneTree:ENSGT00550000074566
OMA:IEVEIMT BindingDB:P09867 NextBio:20866978 Uniprot:P09867
Length = 320
Score = 226 (84.6 bits), Expect = 5.2e-21, Sum P(2) = 5.2e-21
Identities = 53/150 (35%), Positives = 78/150 (52%)
Query: 1 MKDRKTGQPRGFGFVTYADPSVVDKVIEDT-HIINGKQVEIKRTIPK--GAVGSKDFKTK 57
M+D T + RGFGFVTYA VD + H ++G+ VE KR + + K
Sbjct: 46 MRDPNTKRSRGFGFVTYATVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTVK 105
Query: 58 KIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAK 117
KIFVGGI E +D+F Q+G ++ +IM D + + RGF F+TFD +VD ++ +
Sbjct: 106 KIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQ 165
Query: 118 GNKLELAGAQVEVKKAEPKKPNLPQPSYRR 147
+ G EV+KA K+ S +R
Sbjct: 166 KYHT-VNGHNCEVRKALSKQEMASASSSQR 194
Score = 143 (55.4 bits), Expect = 3.0e-11, Sum P(2) = 3.0e-11
Identities = 29/78 (37%), Positives = 50/78 (64%)
Query: 57 KKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLL- 115
+K+F+GG+ ++ + F Q+G + + +MRD +T RSRGFGF+T+ T + VD +
Sbjct: 14 RKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMN 73
Query: 116 AKGNKLELAGAQVEVKKA 133
A+ +K++ G VE K+A
Sbjct: 74 ARPHKVD--GRVVEPKRA 89
Score = 35 (17.4 bits), Expect = 5.2e-21, Sum P(2) = 5.2e-21
Identities = 7/15 (46%), Positives = 9/15 (60%)
Query: 234 GRYGGFNRGYDVTGD 248
G YGG GY+ G+
Sbjct: 235 GGYGGSGDGYNGFGN 249
>UNIPROTKB|F8VSB5 [details] [associations]
symbol:HNRNPA1 "Heterogeneous nuclear ribonucleoprotein A1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0045111
"intermediate filament cytoskeleton" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005737 GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0045111 InterPro:IPR021662
Pfam:PF11627 EMBL:AC078778 HGNC:HGNC:5031 ChiTaRS:HNRNPA1
IPI:IPI01022218 ProteinModelPortal:F8VSB5 SMR:F8VSB5 PRIDE:F8VSB5
Ensembl:ENST00000552494 ArrayExpress:F8VSB5 Bgee:F8VSB5
Uniprot:F8VSB5
Length = 306
Score = 226 (84.6 bits), Expect = 5.2e-21, Sum P(2) = 5.2e-21
Identities = 53/150 (35%), Positives = 78/150 (52%)
Query: 1 MKDRKTGQPRGFGFVTYADPSVVDKVIEDT-HIINGKQVEIKRTIPK--GAVGSKDFKTK 57
M+D T + RGFGFVTYA VD + H ++G+ VE KR + + K
Sbjct: 46 MRDPNTKRSRGFGFVTYATVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTVK 105
Query: 58 KIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAK 117
KIFVGGI E +D+F Q+G ++ +IM D + + RGF F+TFD +VD ++ +
Sbjct: 106 KIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQ 165
Query: 118 GNKLELAGAQVEVKKAEPKKPNLPQPSYRR 147
+ G EV+KA K+ S +R
Sbjct: 166 KYHT-VNGHNCEVRKALSKQEMASASSSQR 194
Score = 143 (55.4 bits), Expect = 2.4e-11, Sum P(2) = 2.4e-11
Identities = 29/78 (37%), Positives = 50/78 (64%)
Query: 57 KKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLL- 115
+K+F+GG+ ++ + F Q+G + + +MRD +T RSRGFGF+T+ T + VD +
Sbjct: 14 RKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMN 73
Query: 116 AKGNKLELAGAQVEVKKA 133
A+ +K++ G VE K+A
Sbjct: 74 ARPHKVD--GRVVEPKRA 89
Score = 35 (17.4 bits), Expect = 5.2e-21, Sum P(2) = 5.2e-21
Identities = 7/15 (46%), Positives = 9/15 (60%)
Query: 234 GRYGGFNRGYDVTGD 248
G YGG GY+ G+
Sbjct: 235 GGYGGSGDGYNGFGN 249
>UNIPROTKB|F8W1S7 [details] [associations]
symbol:HNRNPA1 "Heterogeneous nuclear ribonucleoprotein A1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0045111
"intermediate filament cytoskeleton" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005737 GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0045111 InterPro:IPR021662
Pfam:PF11627 EMBL:AC078778 HGNC:HGNC:5031 ChiTaRS:HNRNPA1
IPI:IPI01021812 ProteinModelPortal:F8W1S7 SMR:F8W1S7 PRIDE:F8W1S7
Ensembl:ENST00000552591 ArrayExpress:F8W1S7 Bgee:F8W1S7
Uniprot:F8W1S7
Length = 330
Score = 226 (84.6 bits), Expect = 5.2e-21, Sum P(2) = 5.2e-21
Identities = 53/150 (35%), Positives = 78/150 (52%)
Query: 1 MKDRKTGQPRGFGFVTYADPSVVDKVIEDT-HIINGKQVEIKRTIPK--GAVGSKDFKTK 57
M+D T + RGFGFVTYA VD + H ++G+ VE KR + + K
Sbjct: 46 MRDPNTKRSRGFGFVTYATVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTVK 105
Query: 58 KIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAK 117
KIFVGGI E +D+F Q+G ++ +IM D + + RGF F+TFD +VD ++ +
Sbjct: 106 KIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQ 165
Query: 118 GNKLELAGAQVEVKKAEPKKPNLPQPSYRR 147
+ G EV+KA K+ S +R
Sbjct: 166 KYHT-VNGHNCEVRKALSKQEMASASSSQR 194
Score = 143 (55.4 bits), Expect = 3.5e-11, Sum P(2) = 3.5e-11
Identities = 29/78 (37%), Positives = 50/78 (64%)
Query: 57 KKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLL- 115
+K+F+GG+ ++ + F Q+G + + +MRD +T RSRGFGF+T+ T + VD +
Sbjct: 14 RKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMN 73
Query: 116 AKGNKLELAGAQVEVKKA 133
A+ +K++ G VE K+A
Sbjct: 74 ARPHKVD--GRVVEPKRA 89
Score = 35 (17.4 bits), Expect = 5.2e-21, Sum P(2) = 5.2e-21
Identities = 7/15 (46%), Positives = 9/15 (60%)
Query: 234 GRYGGFNRGYDVTGD 248
G YGG GY+ G+
Sbjct: 235 GGYGGSGDGYNGFGN 249
>UNIPROTKB|F8W6I7 [details] [associations]
symbol:HNRNPA1 "Heterogeneous nuclear ribonucleoprotein A1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0045111
"intermediate filament cytoskeleton" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005737 GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0045111 InterPro:IPR021662
Pfam:PF11627 EMBL:AC078778 HGNC:HGNC:5031 ChiTaRS:HNRNPA1
IPI:IPI01021324 ProteinModelPortal:F8W6I7 SMR:F8W6I7 PRIDE:F8W6I7
Ensembl:ENST00000330752 ArrayExpress:F8W6I7 Bgee:F8W6I7
Uniprot:F8W6I7
Length = 320
Score = 226 (84.6 bits), Expect = 5.2e-21, Sum P(2) = 5.2e-21
Identities = 53/150 (35%), Positives = 78/150 (52%)
Query: 1 MKDRKTGQPRGFGFVTYADPSVVDKVIEDT-HIINGKQVEIKRTIPK--GAVGSKDFKTK 57
M+D T + RGFGFVTYA VD + H ++G+ VE KR + + K
Sbjct: 46 MRDPNTKRSRGFGFVTYATVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTVK 105
Query: 58 KIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAK 117
KIFVGGI E +D+F Q+G ++ +IM D + + RGF F+TFD +VD ++ +
Sbjct: 106 KIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQ 165
Query: 118 GNKLELAGAQVEVKKAEPKKPNLPQPSYRR 147
+ G EV+KA K+ S +R
Sbjct: 166 KYHT-VNGHNCEVRKALSKQEMASASSSQR 194
Score = 143 (55.4 bits), Expect = 3.0e-11, Sum P(2) = 3.0e-11
Identities = 29/78 (37%), Positives = 50/78 (64%)
Query: 57 KKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLL- 115
+K+F+GG+ ++ + F Q+G + + +MRD +T RSRGFGF+T+ T + VD +
Sbjct: 14 RKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMN 73
Query: 116 AKGNKLELAGAQVEVKKA 133
A+ +K++ G VE K+A
Sbjct: 74 ARPHKVD--GRVVEPKRA 89
Score = 35 (17.4 bits), Expect = 5.2e-21, Sum P(2) = 5.2e-21
Identities = 7/15 (46%), Positives = 9/15 (60%)
Query: 234 GRYGGFNRGYDVTGD 248
G YGG GY+ G+
Sbjct: 235 GGYGGSGDGYNGFGN 249
>UNIPROTKB|Q06A94 [details] [associations]
symbol:HNRNPA1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005634 "nucleus" evidence=IEA] [GO:0000380
"alternative mRNA splicing, via spliceosome" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005737 GO:GO:0005654 GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003697 GO:GO:0071013 GO:GO:0051168
eggNOG:COG0724 GO:GO:0000380 HOVERGEN:HBG002295 GO:GO:0051170
HOGENOM:HOG000234442 KO:K12741 OrthoDB:EOG4HQDKF InterPro:IPR021662
Pfam:PF11627 CTD:3178 GeneTree:ENSGT00550000074566 OMA:IEVEIMT
EMBL:CU694683 EMBL:DQ972970 RefSeq:NP_001070686.1 UniGene:Ssc.49600
SMR:Q06A94 Ensembl:ENSSSCT00000000309 GeneID:768103 KEGG:ssc:768103
Uniprot:Q06A94
Length = 320
Score = 226 (84.6 bits), Expect = 5.2e-21, Sum P(2) = 5.2e-21
Identities = 53/150 (35%), Positives = 78/150 (52%)
Query: 1 MKDRKTGQPRGFGFVTYADPSVVDKVIEDT-HIINGKQVEIKRTIPK--GAVGSKDFKTK 57
M+D T + RGFGFVTYA VD + H ++G+ VE KR + + K
Sbjct: 46 MRDPNTKRSRGFGFVTYATVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTVK 105
Query: 58 KIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAK 117
KIFVGGI E +D+F Q+G ++ +IM D + + RGF F+TFD +VD ++ +
Sbjct: 106 KIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQ 165
Query: 118 GNKLELAGAQVEVKKAEPKKPNLPQPSYRR 147
+ G EV+KA K+ S +R
Sbjct: 166 KYHT-VNGHNCEVRKALSKQEMASASSSQR 194
Score = 143 (55.4 bits), Expect = 3.0e-11, Sum P(2) = 3.0e-11
Identities = 29/78 (37%), Positives = 50/78 (64%)
Query: 57 KKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLL- 115
+K+F+GG+ ++ + F Q+G + + +MRD +T RSRGFGF+T+ T + VD +
Sbjct: 14 RKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMN 73
Query: 116 AKGNKLELAGAQVEVKKA 133
A+ +K++ G VE K+A
Sbjct: 74 ARPHKVD--GRVVEPKRA 89
Score = 35 (17.4 bits), Expect = 5.2e-21, Sum P(2) = 5.2e-21
Identities = 7/15 (46%), Positives = 9/15 (60%)
Query: 234 GRYGGFNRGYDVTGD 248
G YGG GY+ G+
Sbjct: 235 GGYGGSGDGYNGFGN 249
>UNIPROTKB|A5A6H4 [details] [associations]
symbol:HNRNPA1 "Heterogeneous nuclear ribonucleoprotein A1"
species:9598 "Pan troglodytes" [GO:0030529 "ribonucleoprotein
complex" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005737
GO:GO:0008380 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0005681 GO:GO:0003723 GO:GO:0030529 GO:GO:0051028
eggNOG:COG0724 HOVERGEN:HBG002295 HOGENOM:HOG000234442 KO:K12741
OrthoDB:EOG4HQDKF InterPro:IPR021662 Pfam:PF11627 CTD:3178
GeneTree:ENSGT00550000074566 OMA:IEVEIMT EMBL:AB222102
EMBL:AL954201 RefSeq:NP_001091892.1 RefSeq:NP_001184040.1
RefSeq:XP_003318234.1 RefSeq:XP_003954396.1 UniGene:Ptr.6288
UniGene:Ptr.6435 ProteinModelPortal:A5A6H4 SMR:A5A6H4 PRIDE:A5A6H4
Ensembl:ENSPTRT00000010845 GeneID:100615525 GeneID:739306
GeneID:747284 KEGG:ptr:100615525 KEGG:ptr:739306 KEGG:ptr:747284
CTD:739306 InParanoid:A5A6H4 BindingDB:A5A6H4 NextBio:20906554
Uniprot:A5A6H4
Length = 320
Score = 226 (84.6 bits), Expect = 5.2e-21, Sum P(2) = 5.2e-21
Identities = 53/150 (35%), Positives = 78/150 (52%)
Query: 1 MKDRKTGQPRGFGFVTYADPSVVDKVIEDT-HIINGKQVEIKRTIPK--GAVGSKDFKTK 57
M+D T + RGFGFVTYA VD + H ++G+ VE KR + + K
Sbjct: 46 MRDPNTKRSRGFGFVTYATVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTVK 105
Query: 58 KIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAK 117
KIFVGGI E +D+F Q+G ++ +IM D + + RGF F+TFD +VD ++ +
Sbjct: 106 KIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQ 165
Query: 118 GNKLELAGAQVEVKKAEPKKPNLPQPSYRR 147
+ G EV+KA K+ S +R
Sbjct: 166 KYHT-VNGHNCEVRKALSKQEMASASSSQR 194
Score = 143 (55.4 bits), Expect = 3.0e-11, Sum P(2) = 3.0e-11
Identities = 29/78 (37%), Positives = 50/78 (64%)
Query: 57 KKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLL- 115
+K+F+GG+ ++ + F Q+G + + +MRD +T RSRGFGF+T+ T + VD +
Sbjct: 14 RKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMN 73
Query: 116 AKGNKLELAGAQVEVKKA 133
A+ +K++ G VE K+A
Sbjct: 74 ARPHKVD--GRVVEPKRA 89
Score = 35 (17.4 bits), Expect = 5.2e-21, Sum P(2) = 5.2e-21
Identities = 7/15 (46%), Positives = 9/15 (60%)
Query: 234 GRYGGFNRGYDVTGD 248
G YGG GY+ G+
Sbjct: 235 GGYGGSGDGYNGFGN 249
>UNIPROTKB|Q28521 [details] [associations]
symbol:HNRNPA1 "Heterogeneous nuclear ribonucleoprotein A1"
species:9544 "Macaca mulatta" [GO:0030529 "ribonucleoprotein
complex" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005737
GO:GO:0008380 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0005681 GO:GO:0003723 GO:GO:0030529 GO:GO:0051028
eggNOG:COG0724 HOVERGEN:HBG002295 HOGENOM:HOG000234442 KO:K12741
OrthoDB:EOG4HQDKF InterPro:IPR021662 Pfam:PF11627 CTD:3178
EMBL:M84334 PIR:S30192 RefSeq:NP_001036248.1 UniGene:Mmu.4980
ProteinModelPortal:Q28521 SMR:Q28521 STRING:Q28521 PRIDE:Q28521
GeneID:702977 KEGG:mcc:702977 InParanoid:Q28521 NextBio:19966247
Uniprot:Q28521
Length = 320
Score = 226 (84.6 bits), Expect = 5.2e-21, Sum P(2) = 5.2e-21
Identities = 53/150 (35%), Positives = 78/150 (52%)
Query: 1 MKDRKTGQPRGFGFVTYADPSVVDKVIEDT-HIINGKQVEIKRTIPK--GAVGSKDFKTK 57
M+D T + RGFGFVTYA VD + H ++G+ VE KR + + K
Sbjct: 46 MRDPNTKRSRGFGFVTYATVEKVDAAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTVK 105
Query: 58 KIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAK 117
KIFVGGI E +D+F Q+G ++ +IM D + + RGF F+TFD +VD ++ +
Sbjct: 106 KIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHNSVDKIVIQ 165
Query: 118 GNKLELAGAQVEVKKAEPKKPNLPQPSYRR 147
+ G EV+KA K+ S +R
Sbjct: 166 KYHT-VNGHNCEVRKALSKQEMASASSSQR 194
Score = 143 (55.4 bits), Expect = 3.0e-11, Sum P(2) = 3.0e-11
Identities = 29/78 (37%), Positives = 50/78 (64%)
Query: 57 KKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLL- 115
+K+F+GG+ ++ + F Q+G + + +MRD +T RSRGFGF+T+ T + VD +
Sbjct: 14 RKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEKVDAAMN 73
Query: 116 AKGNKLELAGAQVEVKKA 133
A+ +K++ G VE K+A
Sbjct: 74 ARPHKVD--GRVVEPKRA 89
Score = 35 (17.4 bits), Expect = 5.2e-21, Sum P(2) = 5.2e-21
Identities = 7/15 (46%), Positives = 9/15 (60%)
Query: 234 GRYGGFNRGYDVTGD 248
G YGG GY+ G+
Sbjct: 235 GGYGGSGDGYNGFGN 249
>MGI|MGI:104820 [details] [associations]
symbol:Hnrnpa1 "heterogeneous nuclear ribonucleoprotein A1"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000380 "alternative mRNA splicing, via
spliceosome" evidence=IDA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003697 "single-stranded DNA binding"
evidence=ISO] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IDA] [GO:0005654 "nucleoplasm" evidence=ISO]
[GO:0005681 "spliceosomal complex" evidence=ISO] [GO:0005737
"cytoplasm" evidence=ISO] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0006810 "transport" evidence=IEA] [GO:0008380
"RNA splicing" evidence=IDA] [GO:0030529 "ribonucleoprotein
complex" evidence=ISO] [GO:0051028 "mRNA transport" evidence=IEA]
[GO:0051168 "nuclear export" evidence=ISO] [GO:0051170 "nuclear
import" evidence=ISO] [GO:0071013 "catalytic step 2 spliceosome"
evidence=ISO] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 MGI:MGI:104820 GO:GO:0005737
GO:GO:0005654 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0005681
GO:GO:0003723 GO:GO:0003697 GO:GO:0051028 GO:GO:0051168
eggNOG:COG0724 GO:GO:0000380 HOVERGEN:HBG002295 GO:GO:0051170
HOGENOM:HOG000234442 KO:K12741 OrthoDB:EOG4HQDKF InterPro:IPR021662
Pfam:PF11627 CTD:3178 GeneTree:ENSGT00550000074566 ChiTaRS:HNRNPA1
EMBL:M99167 EMBL:D86729 EMBL:D86728 EMBL:AK007802 EMBL:AK088308
EMBL:AK131999 EMBL:AK135391 EMBL:AK161730 EMBL:AK166901
EMBL:AK167161 EMBL:AK167810 EMBL:AK167913 EMBL:AK168420
EMBL:AK168531 EMBL:BC080675 EMBL:BC083136 IPI:IPI00553777
IPI:IPI00817004 PIR:A44485 RefSeq:NP_034577.1 UniGene:Mm.237064
UniGene:Mm.432031 ProteinModelPortal:P49312 SMR:P49312
IntAct:P49312 STRING:P49312 PhosphoSite:P49312 PaxDb:P49312
PRIDE:P49312 Ensembl:ENSMUST00000087351 GeneID:15382 KEGG:mmu:15382
UCSC:uc007xxp.1 UCSC:uc012aah.1 BindingDB:P49312 NextBio:288050
Bgee:P49312 CleanEx:MM_HNRNPA1 Genevestigator:P49312
GermOnline:ENSMUSG00000058922 Uniprot:P49312
Length = 320
Score = 226 (84.6 bits), Expect = 5.2e-21, Sum P(2) = 5.2e-21
Identities = 53/150 (35%), Positives = 78/150 (52%)
Query: 1 MKDRKTGQPRGFGFVTYADPSVVDKVIEDT-HIINGKQVEIKRTIPK--GAVGSKDFKTK 57
M+D T + RGFGFVTYA VD + H ++G+ VE KR + + K
Sbjct: 46 MRDPNTKRSRGFGFVTYATVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTVK 105
Query: 58 KIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAK 117
KIFVGGI E +D+F Q+G ++ +IM D + + RGF F+TFD +VD ++ +
Sbjct: 106 KIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQ 165
Query: 118 GNKLELAGAQVEVKKAEPKKPNLPQPSYRR 147
+ G EV+KA K+ S +R
Sbjct: 166 KYHT-VNGHNCEVRKALSKQEMASASSSQR 194
Score = 143 (55.4 bits), Expect = 3.0e-11, Sum P(2) = 3.0e-11
Identities = 29/78 (37%), Positives = 50/78 (64%)
Query: 57 KKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLL- 115
+K+F+GG+ ++ + F Q+G + + +MRD +T RSRGFGF+T+ T + VD +
Sbjct: 14 RKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMN 73
Query: 116 AKGNKLELAGAQVEVKKA 133
A+ +K++ G VE K+A
Sbjct: 74 ARPHKVD--GRVVEPKRA 89
Score = 35 (17.4 bits), Expect = 5.2e-21, Sum P(2) = 5.2e-21
Identities = 7/15 (46%), Positives = 9/15 (60%)
Query: 234 GRYGGFNRGYDVTGD 248
G YGG GY+ G+
Sbjct: 235 GGYGGSGDGYNGFGN 249
>UNIPROTKB|D4ACJ8 [details] [associations]
symbol:Hnrnpa1 "Heterogeneous nuclear ribonucleoprotein A1"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 RGD:69234 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 IPI:IPI00780243 Ensembl:ENSRNOT00000055282
ArrayExpress:D4ACJ8 Uniprot:D4ACJ8
Length = 268
Score = 226 (84.6 bits), Expect = 5.2e-21, Sum P(2) = 5.2e-21
Identities = 53/150 (35%), Positives = 78/150 (52%)
Query: 1 MKDRKTGQPRGFGFVTYADPSVVDKVIEDT-HIINGKQVEIKRTIPK--GAVGSKDFKTK 57
M+D T + RGFGFVTYA VD + H ++G+ VE KR + + K
Sbjct: 46 MRDPNTKRSRGFGFVTYATVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTVK 105
Query: 58 KIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAK 117
KIFVGGI E +D+F Q+G ++ +IM D + + RGF F+TFD +VD ++ +
Sbjct: 106 KIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQ 165
Query: 118 GNKLELAGAQVEVKKAEPKKPNLPQPSYRR 147
+ G EV+KA K+ S +R
Sbjct: 166 KYHT-VNGHNCEVRKALSKQEMASASSSQR 194
Score = 143 (55.4 bits), Expect = 1.1e-11, Sum P(2) = 1.1e-11
Identities = 29/78 (37%), Positives = 50/78 (64%)
Query: 57 KKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLL- 115
+K+F+GG+ ++ + F Q+G + + +MRD +T RSRGFGF+T+ T + VD +
Sbjct: 14 RKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMN 73
Query: 116 AKGNKLELAGAQVEVKKA 133
A+ +K++ G VE K+A
Sbjct: 74 ARPHKVD--GRVVEPKRA 89
Score = 35 (17.4 bits), Expect = 5.2e-21, Sum P(2) = 5.2e-21
Identities = 7/15 (46%), Positives = 9/15 (60%)
Query: 234 GRYGGFNRGYDVTGD 248
G YGG GY+ G+
Sbjct: 235 GGYGGSGDGYNGFGN 249
>UNIPROTKB|Q5I0M7 [details] [associations]
symbol:Hnrnpa1 "Hnrpa1 protein" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:69234 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:CH474035 eggNOG:COG0724 HOVERGEN:HBG002295 InterPro:IPR021662
Pfam:PF11627 GeneTree:ENSGT00550000074566 IPI:IPI00421500
UniGene:Rn.25771 EMBL:BC088150 SMR:Q5I0M7 STRING:Q5I0M7
Ensembl:ENSRNOT00000055285 Genevestigator:Q5I0M7 Uniprot:Q5I0M7
Length = 320
Score = 226 (84.6 bits), Expect = 5.2e-21, Sum P(2) = 5.2e-21
Identities = 53/150 (35%), Positives = 78/150 (52%)
Query: 1 MKDRKTGQPRGFGFVTYADPSVVDKVIEDT-HIINGKQVEIKRTIPK--GAVGSKDFKTK 57
M+D T + RGFGFVTYA VD + H ++G+ VE KR + + K
Sbjct: 46 MRDPNTKRSRGFGFVTYATVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTVK 105
Query: 58 KIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAK 117
KIFVGGI E +D+F Q+G ++ +IM D + + RGF F+TFD +VD ++ +
Sbjct: 106 KIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQ 165
Query: 118 GNKLELAGAQVEVKKAEPKKPNLPQPSYRR 147
+ G EV+KA K+ S +R
Sbjct: 166 KYHT-VNGHNCEVRKALSKQEMASASSSQR 194
Score = 143 (55.4 bits), Expect = 3.0e-11, Sum P(2) = 3.0e-11
Identities = 29/78 (37%), Positives = 50/78 (64%)
Query: 57 KKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLL- 115
+K+F+GG+ ++ + F Q+G + + +MRD +T RSRGFGF+T+ T + VD +
Sbjct: 14 RKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMN 73
Query: 116 AKGNKLELAGAQVEVKKA 133
A+ +K++ G VE K+A
Sbjct: 74 ARPHKVD--GRVVEPKRA 89
Score = 35 (17.4 bits), Expect = 5.2e-21, Sum P(2) = 5.2e-21
Identities = 7/15 (46%), Positives = 9/15 (60%)
Query: 234 GRYGGFNRGYDVTGD 248
G YGG GY+ G+
Sbjct: 235 GGYGGSGDGYNGFGN 249
>UNIPROTKB|E2QXH4 [details] [associations]
symbol:HNRNPA2B1 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104376 EMBL:AAEX03009384
ProteinModelPortal:E2QXH4 Ensembl:ENSCAFT00000004613 Uniprot:E2QXH4
Length = 301
Score = 217 (81.4 bits), Expect = 5.2e-21, Sum P(2) = 5.2e-21
Identities = 49/137 (35%), Positives = 75/137 (54%)
Query: 1 MKDRKTGQPRGFGFVTYADPSVVDKVIEDT-HIINGKQVEIKRTIPKGAVGSKD--FKTK 57
M+D + + RGFGFVT++ + VD + H I+G+ VE KR + + G K
Sbjct: 1 MRDPASKRSRGFGFVTFSSMAEVDAAMAARPHSIDGRVVEPKRAVAREESGKPGAHVTVK 60
Query: 58 KIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDL-LA 116
K+FVGGI E +D+F ++G + +I+ D + + RGFGF+TFD VD + L
Sbjct: 61 KLFVGGIKEDTEEHHLRDYFEEYGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKIVLQ 120
Query: 117 KGNKLELAGAQVEVKKA 133
K + + G EV+KA
Sbjct: 121 KYHTIN--GHNAEVRKA 135
Score = 108 (43.1 bits), Expect = 2.2e-05, Sum P(2) = 2.2e-05
Identities = 19/45 (42%), Positives = 31/45 (68%)
Query: 3 DRKTGQPRGFGFVTYADPSVVDKVI-EDTHIINGKQVEIKRTIPK 46
DR++G+ RGFGFVT+ D VDK++ + H ING E+++ + +
Sbjct: 94 DRQSGKKRGFGFVTFDDHDPVDKIVLQKYHTINGHNAEVRKALSR 138
Score = 44 (20.5 bits), Expect = 5.2e-21, Sum P(2) = 5.2e-21
Identities = 8/17 (47%), Positives = 10/17 (58%)
Query: 231 GYSGRYGGFNRGYDVTG 247
GY + GG+ GYD G
Sbjct: 223 GYGNQGGGYGGGYDNYG 239
Score = 38 (18.4 bits), Expect = 2.2e-20, Sum P(2) = 2.2e-20
Identities = 8/15 (53%), Positives = 9/15 (60%)
Query: 227 PSSLGYSGRYGGFNR 241
P G SG YGG +R
Sbjct: 286 PGGSGGSGGYGGRSR 300
Score = 35 (17.4 bits), Expect = 4.5e-20, Sum P(2) = 4.5e-20
Identities = 7/14 (50%), Positives = 8/14 (57%)
Query: 229 SLGYSGRYGGFNRG 242
S GY G GG+ G
Sbjct: 207 SPGYGGGRGGYGGG 220
Score = 35 (17.4 bits), Expect = 4.5e-20, Sum P(2) = 4.5e-20
Identities = 9/21 (42%), Positives = 9/21 (42%)
Query: 227 PSSLGYSGRYGGFNRGYDVTG 247
P G G YGG GY G
Sbjct: 208 PGYGGGRGGYGGGGPGYGNQG 228
>UNIPROTKB|E7EWI9 [details] [associations]
symbol:HNRNPA3 "Heterogeneous nuclear ribonucleoprotein A3"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC079305 HGNC:HGNC:24941
ChiTaRS:HNRNPA3 IPI:IPI00939124 ProteinModelPortal:E7EWI9
SMR:E7EWI9 Ensembl:ENST00000416446 ArrayExpress:E7EWI9 Bgee:E7EWI9
Uniprot:E7EWI9
Length = 322
Score = 221 (82.9 bits), Expect = 6.6e-21, Sum P(2) = 6.6e-21
Identities = 49/140 (35%), Positives = 75/140 (53%)
Query: 1 MKDRKTGQPRGFGFVTYADPSVVDKVI-EDTHIINGKQVEIKRTIPK--GAVGSKDFKTK 57
M+D +T + RGFGFVTY+ VD + H ++G+ VE KR + + K
Sbjct: 45 MRDPQTKRSRGFGFVTYSCVEEVDAAMCARPHKVDGRVVEPKRAVSREDSVKPGAHLTVK 104
Query: 58 KIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAK 117
KIFVGGI E +D+F ++G ++ ++M D + + RGF F+TFD VD ++ +
Sbjct: 105 KIFVGGIKEDTEEYNLRDYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVVQ 164
Query: 118 GNKLELAGAQVEVKKAEPKK 137
+ G EVKKA K+
Sbjct: 165 KYHT-INGHNCEVKKALSKQ 183
Score = 141 (54.7 bits), Expect = 2.0e-11, Sum P(2) = 2.0e-11
Identities = 28/85 (32%), Positives = 53/85 (62%)
Query: 57 KKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLL- 115
+K+F+GG+ +D ++ F ++G + + +MRD T RSRGFGF+T+ + VD +
Sbjct: 13 RKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDAAMC 72
Query: 116 AKGNKLELAGAQVEVKKAEPKKPNL 140
A+ +K++ G VE K+A ++ ++
Sbjct: 73 ARPHKVD--GRVVEPKRAVSREDSV 95
Score = 39 (18.8 bits), Expect = 6.6e-21, Sum P(2) = 6.6e-21
Identities = 10/19 (52%), Positives = 10/19 (52%)
Query: 231 GYSGR--YGGFNRGYDVTG 247
GYS R YGG GY G
Sbjct: 226 GYSSRGGYGGGGPGYGNQG 244
Score = 35 (17.4 bits), Expect = 1.7e-20, Sum P(2) = 1.7e-20
Identities = 7/17 (41%), Positives = 9/17 (52%)
Query: 231 GYSGRYGGFNRGYDVTG 247
G G Y G+N G + G
Sbjct: 248 GGGGGYDGYNEGGNFGG 264
>ZFIN|ZDB-GENE-060224-1 [details] [associations]
symbol:hnrnpa3 "heterogeneous nuclear
ribonucleoprotein A3" species:7955 "Danio rerio" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0030529 "ribonucleoprotein complex"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-060224-1 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0030529 HOVERGEN:HBG002295
GeneTree:ENSGT00700000104376 EMBL:CR848724 IPI:IPI00863016
UniGene:Dr.85855 SMR:B0V1I7 Ensembl:ENSDART00000135273 OMA:IETIDIM
Uniprot:B0V1I7
Length = 312
Score = 220 (82.5 bits), Expect = 6.6e-21, Sum P(2) = 6.6e-21
Identities = 53/151 (35%), Positives = 79/151 (52%)
Query: 1 MKDRKTGQPRGFGFVTYADPSVVDKVIEDT-HIINGKQVEIKRTIPKGAVGSKD--FKTK 57
M+D + RGFGFVTY+ S VD + H ++G+ VE KR + + K
Sbjct: 45 MRDPANKRSRGFGFVTYSSVSEVDAAMTARPHKVDGRVVEPKRAVSREDSNKPGAHLTVK 104
Query: 58 KIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAK 117
KIFVGGI E +++F +G ++ IM + ST + RGF F+TFD VD ++A+
Sbjct: 105 KIFVGGIKEDTEEYHIREYFECYGKIETIDIMEERSTGKKRGFCFVTFDDHDTVDKIVAQ 164
Query: 118 GNKLELAGAQVEVKKAEPKKPNLPQPSYRRY 148
+ EV+KA PK+ + S +RY
Sbjct: 165 KYHT-INSHNCEVRKALPKQ-EMQSSSNQRY 193
Score = 140 (54.3 bits), Expect = 1.7e-11, Sum P(2) = 1.7e-11
Identities = 31/87 (35%), Positives = 52/87 (59%)
Query: 57 KKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLL- 115
+K+F+GG+ ED + F Q+G + + +MRD + RSRGFGF+T+ + VD +
Sbjct: 13 RKLFIGGLSFETTEDSLRAHFEQWGKLTDCVVMRDPANKRSRGFGFVTYSSVSEVDAAMT 72
Query: 116 AKGNKLELAGAQVEVKKAEPKKP-NLP 141
A+ +K++ G VE K+A ++ N P
Sbjct: 73 ARPHKVD--GRVVEPKRAVSREDSNKP 97
Score = 40 (19.1 bits), Expect = 6.6e-21, Sum P(2) = 6.6e-21
Identities = 7/13 (53%), Positives = 8/13 (61%)
Query: 231 GYSGRYGGFNRGY 243
G+ G YGG GY
Sbjct: 225 GFGGNYGGGPGGY 237
Score = 35 (17.4 bits), Expect = 2.2e-20, Sum P(2) = 2.2e-20
Identities = 6/11 (54%), Positives = 8/11 (72%)
Query: 232 YSGRYGGFNRG 242
++GR G F RG
Sbjct: 201 FTGRGGNFGRG 211
>RGD|620365 [details] [associations]
symbol:Hnrpd "heterogeneous nuclear ribonucleoprotein D"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000291 "nuclear-transcribed mRNA catabolic
process, exonucleolytic" evidence=TAS] [GO:0003723 "RNA binding"
evidence=ISO;ISS] [GO:0003729 "mRNA binding" evidence=TAS]
[GO:0005634 "nucleus" evidence=IEA;ISO] [GO:0005829 "cytosol"
evidence=IDA] [GO:0006913 "nucleocytoplasmic transport"
evidence=TAS] [GO:0030529 "ribonucleoprotein complex"
evidence=IEA;ISO;ISS] [GO:0042162 "telomeric DNA binding"
evidence=IEA;ISO;ISS] [GO:0043488 "regulation of mRNA stability"
evidence=IEA;ISO] [GO:0048255 "mRNA stabilization" evidence=IDA]
[GO:0005730 "nucleolus" evidence=ISO] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:620365 GO:GO:0005829 GO:GO:0005634 GO:GO:0000166 GO:GO:0003729
Gene3D:3.30.70.330 GO:GO:0006913 GO:GO:0048255 GO:GO:0030529
GO:GO:0042162 HOGENOM:HOG000234441 HOVERGEN:HBG002295 KO:K13044
OrthoDB:EOG49W2FZ GermOnline:ENSRNOG00000002292 InterPro:IPR012956
Pfam:PF08143 EMBL:AB046615 EMBL:AB046616 EMBL:AB046617
EMBL:AB046618 IPI:IPI00201032 IPI:IPI00231383 IPI:IPI00231384
IPI:IPI00231385 RefSeq:NP_001076008.1 RefSeq:NP_001076009.1
RefSeq:NP_001076010.1 RefSeq:NP_077380.2 UniGene:Rn.94022
ProteinModelPortal:Q9JJ54 SMR:Q9JJ54 STRING:Q9JJ54
PhosphoSite:Q9JJ54 PRIDE:Q9JJ54 GeneID:79256 KEGG:rno:79256
UCSC:RGD:620365 CTD:79256 InParanoid:Q9JJ54 NextBio:614748
ArrayExpress:Q9JJ54 Genevestigator:Q9JJ54 GO:GO:0000291
Uniprot:Q9JJ54
Length = 353
Score = 214 (80.4 bits), Expect = 6.8e-21, Sum P(2) = 6.8e-21
Identities = 51/137 (37%), Positives = 82/137 (59%)
Query: 3 DRKTGQPRGFGFVTYADPSVVDKVIEDT-HIINGKQVEIKRTIPKGAVGSKDFKTKKIFV 61
D TG+ RGFGFV + + VDKV++ H +NGK ++ KR A+ +K+ KKIFV
Sbjct: 129 DPITGRSRGFGFVLFKESESVDKVMDQKEHKLNGKVIDPKRA---KAMKTKE-PVKKIFV 184
Query: 62 GGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKL 121
GG+ E++ +++F FG+V+ ++ D+ T++ RGF FITF E+ V ++ K K
Sbjct: 185 GGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEK--KY 242
Query: 122 ELAG-AQVEVKKAEPKK 137
G ++ E+K A K+
Sbjct: 243 HNVGLSKCEIKVAMSKE 259
Score = 146 (56.5 bits), Expect = 4.9e-13, Sum P(2) = 4.9e-13
Identities = 31/85 (36%), Positives = 50/85 (58%)
Query: 58 KIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLL-A 116
K+F+GG+ + + KD+F +FGDV + + D T RSRGFGF+ F ++VD ++
Sbjct: 96 KMFIGGLSWDTTKKDLKDYFSKFGDVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQ 155
Query: 117 KGNKLELAGAQVEVKKAEPKKPNLP 141
K +KL G ++ K+A+ K P
Sbjct: 156 KEHKLN--GKVIDPKRAKAMKTKEP 178
Score = 51 (23.0 bits), Expect = 6.8e-21, Sum P(2) = 6.8e-21
Identities = 11/20 (55%), Positives = 14/20 (70%)
Query: 229 SLGYSGR-YGGFNRGYDVTG 247
S GY+ + YGG+ GYD TG
Sbjct: 302 SYGYNSQGYGGYG-GYDYTG 320
>UNIPROTKB|Q9JJ54 [details] [associations]
symbol:Hnrnpd "Heterogeneous nuclear ribonucleoprotein D0"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 RGD:620365 GO:GO:0005829
GO:GO:0005634 GO:GO:0000166 GO:GO:0003729 Gene3D:3.30.70.330
GO:GO:0006913 GO:GO:0048255 GO:GO:0030529 GO:GO:0042162
HOGENOM:HOG000234441 HOVERGEN:HBG002295 KO:K13044 OrthoDB:EOG49W2FZ
GermOnline:ENSRNOG00000002292 InterPro:IPR012956 Pfam:PF08143
EMBL:AB046615 EMBL:AB046616 EMBL:AB046617 EMBL:AB046618
IPI:IPI00201032 IPI:IPI00231383 IPI:IPI00231384 IPI:IPI00231385
RefSeq:NP_001076008.1 RefSeq:NP_001076009.1 RefSeq:NP_001076010.1
RefSeq:NP_077380.2 UniGene:Rn.94022 ProteinModelPortal:Q9JJ54
SMR:Q9JJ54 STRING:Q9JJ54 PhosphoSite:Q9JJ54 PRIDE:Q9JJ54
GeneID:79256 KEGG:rno:79256 UCSC:RGD:620365 CTD:79256
InParanoid:Q9JJ54 NextBio:614748 ArrayExpress:Q9JJ54
Genevestigator:Q9JJ54 GO:GO:0000291 Uniprot:Q9JJ54
Length = 353
Score = 214 (80.4 bits), Expect = 6.8e-21, Sum P(2) = 6.8e-21
Identities = 51/137 (37%), Positives = 82/137 (59%)
Query: 3 DRKTGQPRGFGFVTYADPSVVDKVIEDT-HIINGKQVEIKRTIPKGAVGSKDFKTKKIFV 61
D TG+ RGFGFV + + VDKV++ H +NGK ++ KR A+ +K+ KKIFV
Sbjct: 129 DPITGRSRGFGFVLFKESESVDKVMDQKEHKLNGKVIDPKRA---KAMKTKE-PVKKIFV 184
Query: 62 GGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKL 121
GG+ E++ +++F FG+V+ ++ D+ T++ RGF FITF E+ V ++ K K
Sbjct: 185 GGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEK--KY 242
Query: 122 ELAG-AQVEVKKAEPKK 137
G ++ E+K A K+
Sbjct: 243 HNVGLSKCEIKVAMSKE 259
Score = 146 (56.5 bits), Expect = 4.9e-13, Sum P(2) = 4.9e-13
Identities = 31/85 (36%), Positives = 50/85 (58%)
Query: 58 KIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLL-A 116
K+F+GG+ + + KD+F +FGDV + + D T RSRGFGF+ F ++VD ++
Sbjct: 96 KMFIGGLSWDTTKKDLKDYFSKFGDVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQ 155
Query: 117 KGNKLELAGAQVEVKKAEPKKPNLP 141
K +KL G ++ K+A+ K P
Sbjct: 156 KEHKLN--GKVIDPKRAKAMKTKEP 178
Score = 51 (23.0 bits), Expect = 6.8e-21, Sum P(2) = 6.8e-21
Identities = 11/20 (55%), Positives = 14/20 (70%)
Query: 229 SLGYSGR-YGGFNRGYDVTG 247
S GY+ + YGG+ GYD TG
Sbjct: 302 SYGYNSQGYGGYG-GYDYTG 320
>UNIPROTKB|Q9TTV2 [details] [associations]
symbol:HNRNPA2B1 "Heterogeneous nuclear ribonucleoproteins
A2/B1" species:9490 "Saguinus oedipus" [GO:0030529
"ribonucleoprotein complex" evidence=ISS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005737 GO:GO:0005654 GO:GO:0008380 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0003723
GO:GO:0030529 HOVERGEN:HBG002295 HSSP:P22626 EMBL:AF192348
ProteinModelPortal:Q9TTV2 SMR:Q9TTV2 Uniprot:Q9TTV2
Length = 341
Score = 218 (81.8 bits), Expect = 7.4e-21, Sum P(2) = 7.4e-21
Identities = 49/137 (35%), Positives = 75/137 (54%)
Query: 1 MKDRKTGQPRGFGFVTYADPSVVDKVIEDT-HIINGKQVEIKRTIPKGAVGSKD--FKTK 57
M+D + + RGFGFVT++ + VD + H I+G+ VE KR + + G K
Sbjct: 41 MRDPASKRSRGFGFVTFSSMAEVDAAMAARPHSIDGRVVEPKRAVAREESGKPGAHVTVK 100
Query: 58 KIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDL-LA 116
K+FVGGI E +D+F ++G + +I+ D + + RGFGF+TFD VD + L
Sbjct: 101 KLFVGGIKEDTEEHHLRDYFAEYGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKIVLQ 160
Query: 117 KGNKLELAGAQVEVKKA 133
K + + G EV+KA
Sbjct: 161 KYHTIN--GHNAEVRKA 175
Score = 140 (54.3 bits), Expect = 1.0e-11, Sum P(2) = 1.0e-11
Identities = 27/77 (35%), Positives = 47/77 (61%)
Query: 57 KKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLA 116
+K+F+GG+ E+ ++++ Q+G + + +MRD ++ RSRGFGF+TF + VD +A
Sbjct: 9 RKLFIGGLSFQTTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMA 68
Query: 117 KGNKLELAGAQVEVKKA 133
+ G VE K+A
Sbjct: 69 -ARPHSIDGRVVEPKRA 84
Score = 108 (43.1 bits), Expect = 3.4e-05, Sum P(2) = 3.4e-05
Identities = 19/45 (42%), Positives = 31/45 (68%)
Query: 3 DRKTGQPRGFGFVTYADPSVVDKVI-EDTHIINGKQVEIKRTIPK 46
DR++G+ RGFGFVT+ D VDK++ + H ING E+++ + +
Sbjct: 134 DRQSGKKRGFGFVTFDDHDPVDKIVLQKYHTINGHNAEVRKALSR 178
Score = 44 (20.5 bits), Expect = 7.4e-21, Sum P(2) = 7.4e-21
Identities = 8/17 (47%), Positives = 10/17 (58%)
Query: 231 GYSGRYGGFNRGYDVTG 247
GY + GG+ GYD G
Sbjct: 263 GYGNQGGGYGGGYDNYG 279
Score = 38 (18.4 bits), Expect = 3.1e-20, Sum P(2) = 3.1e-20
Identities = 8/15 (53%), Positives = 9/15 (60%)
Query: 227 PSSLGYSGRYGGFNR 241
P G SG YGG +R
Sbjct: 326 PGGSGGSGGYGGRSR 340
Score = 35 (17.4 bits), Expect = 6.4e-20, Sum P(2) = 6.4e-20
Identities = 7/14 (50%), Positives = 8/14 (57%)
Query: 229 SLGYSGRYGGFNRG 242
S GY G GG+ G
Sbjct: 247 SPGYGGGRGGYGGG 260
Score = 35 (17.4 bits), Expect = 6.4e-20, Sum P(2) = 6.4e-20
Identities = 9/21 (42%), Positives = 9/21 (42%)
Query: 227 PSSLGYSGRYGGFNRGYDVTG 247
P G G YGG GY G
Sbjct: 248 PGYGGGRGGYGGGGPGYGNQG 268
>ZFIN|ZDB-GENE-040426-1546 [details] [associations]
symbol:zgc:66127 "zgc:66127" species:7955 "Danio
rerio" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0005575
"cellular_component" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-040426-1546 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 GeneTree:ENSGT00700000104376 EMBL:CABZ01055593
EMBL:CABZ01000532 EMBL:CABZ01000533 EMBL:CABZ01000534
EMBL:CABZ01000536 EMBL:CABZ01000539 EMBL:CABZ01000540
EMBL:CABZ01085064 EMBL:CABZ01085065 EMBL:CABZ01085066
EMBL:CABZ01085067 EMBL:CABZ01085068 EMBL:CABZ01088246
EMBL:CABZ01088247 EMBL:CABZ01088248 EMBL:CABZ01088249
EMBL:CABZ01088250 EMBL:CABZ01088251 EMBL:CABZ01092715
EMBL:CABZ01092716 EMBL:CABZ01092717 EMBL:CABZ01092718
IPI:IPI00971841 Ensembl:ENSDART00000082448 Bgee:E7FAB3
Uniprot:E7FAB3
Length = 411
Score = 225 (84.3 bits), Expect = 7.5e-21, Sum P(2) = 7.5e-21
Identities = 50/136 (36%), Positives = 77/136 (56%)
Query: 1 MKDRKTGQPRGFGFVTYADPSVVDKVIEDT-HIINGKQVEIKRTIPK--GAVGSKDFKTK 57
M+D T + RGFGFVTY+ VD ++ H ++G+ VE KR + + + K
Sbjct: 70 MRDPNTKRSRGFGFVTYSSVGEVDAAMDARPHKVDGRAVEPKRAVSREDSSKPGAHSTVK 129
Query: 58 KIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAK 117
K+FVGGI +E+ +++F QFG + E IM + ++ + RGF FITFD AVD ++ +
Sbjct: 130 KMFVGGIKEDTDEEHLREYFGQFGKIDEVNIMTEKNSDKRRGFAFITFDDHDAVDRIVIQ 189
Query: 118 GNKLELAGAQVEVKKA 133
+ G EV+KA
Sbjct: 190 KYHT-VNGHNCEVRKA 204
Score = 136 (52.9 bits), Expect = 5.8e-11, Sum P(2) = 5.8e-11
Identities = 28/78 (35%), Positives = 49/78 (62%)
Query: 57 KKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLL- 115
+K+F+GG+ ++ + F Q+G + + +MRD +T RSRGFGF+T+ + VD +
Sbjct: 38 RKLFIGGLSFETTDESLRAHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYSSVGEVDAAMD 97
Query: 116 AKGNKLELAGAQVEVKKA 133
A+ +K++ G VE K+A
Sbjct: 98 ARPHKVD--GRAVEPKRA 113
Score = 44 (20.5 bits), Expect = 7.5e-21, Sum P(2) = 7.5e-21
Identities = 9/13 (69%), Positives = 10/13 (76%)
Query: 231 GYSGRYGGFNRGY 243
GY+G YGG N GY
Sbjct: 265 GYNG-YGGGNGGY 276
Score = 36 (17.7 bits), Expect = 5.1e-20, Sum P(2) = 5.1e-20
Identities = 6/8 (75%), Positives = 6/8 (75%)
Query: 231 GYSGRYGG 238
GY G YGG
Sbjct: 243 GYGGGYGG 250
Score = 35 (17.4 bits), Expect = 6.5e-20, Sum P(2) = 6.5e-20
Identities = 7/13 (53%), Positives = 7/13 (53%)
Query: 231 GYSGRYGGFNRGY 243
GY G GG GY
Sbjct: 390 GYGGGSGGGGGGY 402
>RGD|69234 [details] [associations]
symbol:Hnrnpa1 "heterogeneous nuclear ribonucleoprotein A1"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000380 "alternative mRNA splicing, via
spliceosome" evidence=ISO] [GO:0003697 "single-stranded DNA binding"
evidence=ISO;ISS;TAS] [GO:0003723 "RNA binding" evidence=TAS]
[GO:0005634 "nucleus" evidence=ISO] [GO:0005654 "nucleoplasm"
evidence=ISO;ISS] [GO:0005681 "spliceosomal complex"
evidence=ISO;ISS] [GO:0005730 "nucleolus" evidence=ISO] [GO:0005737
"cytoplasm" evidence=ISO;ISS] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA;ISO]
[GO:0016070 "RNA metabolic process" evidence=TAS] [GO:0030529
"ribonucleoprotein complex" evidence=ISO;ISS] [GO:0045111
"intermediate filament cytoskeleton" evidence=ISO] [GO:0051028 "mRNA
transport" evidence=IEA] [GO:0051168 "nuclear export"
evidence=ISO;ISS] [GO:0051170 "nuclear import" evidence=ISO;ISS]
[GO:0071013 "catalytic step 2 spliceosome" evidence=ISO]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 RGD:69234 GO:GO:0005737 GO:GO:0005654 GO:GO:0008380
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0005681
GO:GO:0003723 GO:GO:0003697 GO:GO:0016070 GO:GO:0051028
GO:GO:0051168 eggNOG:COG0724 HOVERGEN:HBG002295 GO:GO:0051170
HOGENOM:HOG000234442 KO:K12741 InterPro:IPR021662 Pfam:PF11627
CTD:3178 EMBL:M12156 IPI:IPI00421500 PIR:A38304 RefSeq:NP_058944.1
UniGene:Rn.25771 ProteinModelPortal:P04256 SMR:P04256 IntAct:P04256
STRING:P04256 PhosphoSite:P04256 PRIDE:P04256 GeneID:29578
KEGG:rno:29578 UCSC:RGD:69234 NextBio:609678 ArrayExpress:P04256
Genevestigator:P04256 GermOnline:ENSRNOG00000036839 Uniprot:P04256
Length = 320
Score = 224 (83.9 bits), Expect = 8.4e-21, Sum P(2) = 8.4e-21
Identities = 53/150 (35%), Positives = 78/150 (52%)
Query: 1 MKDRKTGQPRGFGFVTYADPSVVDKVIEDT-HIINGKQVEIKRTIPK--GAVGSKDFKTK 57
M+D T + RGFGFVTYA VD + H ++G+ VE KR + + K
Sbjct: 46 MRDPNTKRSRGFGFVTYATVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTVK 105
Query: 58 KIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAK 117
KIFVGGI E +D+F Q+G ++ +IM D + + RGF F+TFD +VD ++ +
Sbjct: 106 KIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQ 165
Query: 118 GNKLELAGAQVEVKKAEPKKPNLPQPSYRR 147
+ G EV+KA K+ S +R
Sbjct: 166 KYHT-VNGHNCEVRKALCKQEMASASSSQR 194
Score = 143 (55.4 bits), Expect = 3.0e-11, Sum P(2) = 3.0e-11
Identities = 29/78 (37%), Positives = 50/78 (64%)
Query: 57 KKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLL- 115
+K+F+GG+ ++ + F Q+G + + +MRD +T RSRGFGF+T+ T + VD +
Sbjct: 14 RKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMN 73
Query: 116 AKGNKLELAGAQVEVKKA 133
A+ +K++ G VE K+A
Sbjct: 74 ARPHKVD--GRVVEPKRA 89
Score = 35 (17.4 bits), Expect = 8.4e-21, Sum P(2) = 8.4e-21
Identities = 7/15 (46%), Positives = 9/15 (60%)
Query: 234 GRYGGFNRGYDVTGD 248
G YGG GY+ G+
Sbjct: 235 GGYGGSGDGYNGFGN 249
>UNIPROTKB|Q5RBU8 [details] [associations]
symbol:HNRNPA2B1 "Heterogeneous nuclear ribonucleoproteins
A2/B1" species:9601 "Pongo abelii" [GO:0030529 "ribonucleoprotein
complex" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005737
GO:GO:0005654 GO:GO:0008380 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0003723 GO:GO:0030529
HOVERGEN:HBG002295 CTD:3181 KO:K13158 EMBL:CR858535
RefSeq:NP_001127331.1 UniGene:Pab.19213 HSSP:P22626
ProteinModelPortal:Q5RBU8 SMR:Q5RBU8 PRIDE:Q5RBU8 GeneID:100174392
KEGG:pon:100174392 InParanoid:Q5RBU8 Uniprot:Q5RBU8
Length = 353
Score = 219 (82.2 bits), Expect = 9.0e-21, Sum P(2) = 9.0e-21
Identities = 47/136 (34%), Positives = 75/136 (55%)
Query: 1 MKDRKTGQPRGFGFVTYADPSVVDKVIEDT-HIINGKQVEIKRTIPKGAVGSKD--FKTK 57
M+D + + RGFGFVT++ + VD + H I+G+ VE KR + + G K
Sbjct: 53 MRDPASKRSRGFGFVTFSSMAEVDAAMAARPHSIDGRVVEPKRAVAREESGKPGAHVTVK 112
Query: 58 KIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAK 117
K+FVGGI E +D+F ++G + +I+ D + + RGFGF+TFD VD ++ +
Sbjct: 113 KLFVGGIKEDTEEHHLRDYFEEYGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKIVLQ 172
Query: 118 GNKLELAGAQVEVKKA 133
+ + G EV+KA
Sbjct: 173 KHHT-INGHNAEVRKA 187
Score = 141 (54.7 bits), Expect = 9.1e-12, Sum P(2) = 9.1e-12
Identities = 29/91 (31%), Positives = 52/91 (57%)
Query: 43 TIPKGAVGSKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGF 102
T+P + + +K+F+GG+ E+ ++++ Q+G + + +MRD ++ RSRGFGF
Sbjct: 7 TVPLERKKREKEQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGF 66
Query: 103 ITFDTEQAVDDLLAKGNKLELAGAQVEVKKA 133
+TF + VD +A + G VE K+A
Sbjct: 67 VTFSSMAEVDAAMA-ARPHSIDGRVVEPKRA 96
Score = 108 (43.1 bits), Expect = 3.8e-05, Sum P(2) = 3.8e-05
Identities = 19/45 (42%), Positives = 31/45 (68%)
Query: 3 DRKTGQPRGFGFVTYADPSVVDKVI-EDTHIINGKQVEIKRTIPK 46
DR++G+ RGFGFVT+ D VDK++ + H ING E+++ + +
Sbjct: 146 DRQSGKKRGFGFVTFDDHDPVDKIVLQKHHTINGHNAEVRKALSR 190
Score = 44 (20.5 bits), Expect = 9.0e-21, Sum P(2) = 9.0e-21
Identities = 8/17 (47%), Positives = 10/17 (58%)
Query: 231 GYSGRYGGFNRGYDVTG 247
GY + GG+ GYD G
Sbjct: 275 GYGNQGGGYGGGYDNYG 291
Score = 38 (18.4 bits), Expect = 3.8e-20, Sum P(2) = 3.8e-20
Identities = 8/15 (53%), Positives = 9/15 (60%)
Query: 227 PSSLGYSGRYGGFNR 241
P G SG YGG +R
Sbjct: 338 PGGSGGSGGYGGRSR 352
Score = 35 (17.4 bits), Expect = 7.8e-20, Sum P(2) = 7.8e-20
Identities = 7/14 (50%), Positives = 8/14 (57%)
Query: 229 SLGYSGRYGGFNRG 242
S GY G GG+ G
Sbjct: 259 SPGYGGGRGGYGGG 272
Score = 35 (17.4 bits), Expect = 7.8e-20, Sum P(2) = 7.8e-20
Identities = 9/21 (42%), Positives = 9/21 (42%)
Query: 227 PSSLGYSGRYGGFNRGYDVTG 247
P G G YGG GY G
Sbjct: 260 PGYGGGRGGYGGGGPGYGNQG 280
>UNIPROTKB|Q2HJ60 [details] [associations]
symbol:HNRNPA2B1 "Heterogeneous nuclear ribonucleoproteins
A2/B1" species:9913 "Bos taurus" [GO:0030529 "ribonucleoprotein
complex" evidence=ISS] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0005654 "nucleoplasm" evidence=IEA] [GO:0097157 "pre-mRNA
intronic binding" evidence=IEA] [GO:0071013 "catalytic step 2
spliceosome" evidence=IEA] [GO:0050658 "RNA transport"
evidence=IEA] [GO:0048025 "negative regulation of mRNA splicing,
via spliceosome" evidence=IEA] [GO:0043047 "single-stranded
telomeric DNA binding" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA] [GO:0008380
"RNA splicing" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005737 GO:GO:0005654
GO:GO:0008380 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0005681 GO:GO:0030529 GO:GO:0097157 GO:GO:0048025
eggNOG:COG0724 HOVERGEN:HBG002295 HOGENOM:HOG000234442
OrthoDB:EOG4HQDKF EMBL:BC113298 IPI:IPI00695201
RefSeq:NP_001039440.1 UniGene:Bt.48137 ProteinModelPortal:Q2HJ60
SMR:Q2HJ60 STRING:Q2HJ60 PRIDE:Q2HJ60 Ensembl:ENSBTAT00000007527
GeneID:507564 KEGG:bta:507564 CTD:3181 GeneTree:ENSGT00700000104376
KO:K13158 OMA:HYSARTS NextBio:20868121 Uniprot:Q2HJ60
Length = 341
Score = 217 (81.4 bits), Expect = 9.8e-21, Sum P(2) = 9.8e-21
Identities = 49/137 (35%), Positives = 75/137 (54%)
Query: 1 MKDRKTGQPRGFGFVTYADPSVVDKVIEDT-HIINGKQVEIKRTIPKGAVGSKD--FKTK 57
M+D + + RGFGFVT++ + VD + H I+G+ VE KR + + G K
Sbjct: 41 MRDPASKRSRGFGFVTFSSMAEVDAAMAARPHSIDGRVVEPKRAVAREESGKPGAHVTVK 100
Query: 58 KIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDL-LA 116
K+FVGGI E +D+F ++G + +I+ D + + RGFGF+TFD VD + L
Sbjct: 101 KLFVGGIKEDTEEHHLRDYFEEYGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKIVLQ 160
Query: 117 KGNKLELAGAQVEVKKA 133
K + + G EV+KA
Sbjct: 161 KYHTIN--GHNAEVRKA 175
Score = 140 (54.3 bits), Expect = 1.0e-11, Sum P(2) = 1.0e-11
Identities = 27/77 (35%), Positives = 47/77 (61%)
Query: 57 KKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLA 116
+K+F+GG+ E+ ++++ Q+G + + +MRD ++ RSRGFGF+TF + VD +A
Sbjct: 9 RKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMA 68
Query: 117 KGNKLELAGAQVEVKKA 133
+ G VE K+A
Sbjct: 69 -ARPHSIDGRVVEPKRA 84
Score = 108 (43.1 bits), Expect = 3.4e-05, Sum P(2) = 3.4e-05
Identities = 19/45 (42%), Positives = 31/45 (68%)
Query: 3 DRKTGQPRGFGFVTYADPSVVDKVI-EDTHIINGKQVEIKRTIPK 46
DR++G+ RGFGFVT+ D VDK++ + H ING E+++ + +
Sbjct: 134 DRQSGKKRGFGFVTFDDHDPVDKIVLQKYHTINGHNAEVRKALSR 178
Score = 44 (20.5 bits), Expect = 9.8e-21, Sum P(2) = 9.8e-21
Identities = 8/17 (47%), Positives = 10/17 (58%)
Query: 231 GYSGRYGGFNRGYDVTG 247
GY + GG+ GYD G
Sbjct: 263 GYGNQGGGYGGGYDNYG 279
Score = 38 (18.4 bits), Expect = 4.2e-20, Sum P(2) = 4.2e-20
Identities = 8/15 (53%), Positives = 9/15 (60%)
Query: 227 PSSLGYSGRYGGFNR 241
P G SG YGG +R
Sbjct: 326 PGGSGGSGGYGGRSR 340
Score = 35 (17.4 bits), Expect = 8.5e-20, Sum P(2) = 8.5e-20
Identities = 7/14 (50%), Positives = 8/14 (57%)
Query: 229 SLGYSGRYGGFNRG 242
S GY G GG+ G
Sbjct: 247 SPGYGGGRGGYGGG 260
Score = 35 (17.4 bits), Expect = 8.5e-20, Sum P(2) = 8.5e-20
Identities = 9/21 (42%), Positives = 9/21 (42%)
Query: 227 PSSLGYSGRYGGFNRGYDVTG 247
P G G YGG GY G
Sbjct: 248 PGYGGGRGGYGGGGPGYGNQG 268
>UNIPROTKB|Q5ZME1 [details] [associations]
symbol:HNRNPA2B1 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005730 "nucleolus" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0043047 "single-stranded telomeric DNA binding"
evidence=IEA] [GO:0048025 "negative regulation of mRNA splicing,
via spliceosome" evidence=IEA] [GO:0050658 "RNA transport"
evidence=IEA] [GO:0071013 "catalytic step 2 spliceosome"
evidence=IEA] [GO:0097157 "pre-mRNA intronic binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0097157 GO:GO:0048025 eggNOG:COG0724 HOVERGEN:HBG002295
HOGENOM:HOG000234442 OrthoDB:EOG4HQDKF CTD:3181
GeneTree:ENSGT00700000104376 KO:K13158 OMA:HYSARTS EMBL:AC140791
EMBL:AJ719443 IPI:IPI00651336 RefSeq:NP_001026156.1
UniGene:Gga.22131 SMR:Q5ZME1 IntAct:Q5ZME1 STRING:Q5ZME1
Ensembl:ENSGALT00000017975 GeneID:420627 KEGG:gga:420627
InParanoid:Q5ZME1 NextBio:20823513 Uniprot:Q5ZME1
Length = 349
Score = 218 (81.8 bits), Expect = 1.0e-20, Sum P(2) = 1.0e-20
Identities = 49/137 (35%), Positives = 75/137 (54%)
Query: 1 MKDRKTGQPRGFGFVTYADPSVVDKVIEDT-HIINGKQVEIKRTIPKGAVGSKD--FKTK 57
M+D + + RGFGFVT++ + VD + H I+G+ VE KR + + G K
Sbjct: 49 MRDPASKRSRGFGFVTFSSMAEVDAAMAARPHTIDGRVVEPKRAVAREESGKPGAHVTVK 108
Query: 58 KIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDL-LA 116
K+FVGGI E +D+F ++G + +I+ D + + RGFGF+TFD VD + L
Sbjct: 109 KLFVGGIKEDTEEHHLRDYFEEYGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKIVLQ 168
Query: 117 KGNKLELAGAQVEVKKA 133
K + + G EV+KA
Sbjct: 169 KYHTIN--GHNAEVRKA 183
Score = 139 (54.0 bits), Expect = 1.5e-11, Sum P(2) = 1.5e-11
Identities = 27/77 (35%), Positives = 47/77 (61%)
Query: 57 KKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLA 116
+K+F+GG+ E+ ++++ Q+G + + +MRD ++ RSRGFGF+TF + VD +A
Sbjct: 17 RKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMA 76
Query: 117 KGNKLELAGAQVEVKKA 133
+ G VE K+A
Sbjct: 77 -ARPHTIDGRVVEPKRA 92
Score = 108 (43.1 bits), Expect = 3.7e-05, Sum P(2) = 3.7e-05
Identities = 19/45 (42%), Positives = 31/45 (68%)
Query: 3 DRKTGQPRGFGFVTYADPSVVDKVI-EDTHIINGKQVEIKRTIPK 46
DR++G+ RGFGFVT+ D VDK++ + H ING E+++ + +
Sbjct: 142 DRQSGKKRGFGFVTFDDHDPVDKIVLQKYHTINGHNAEVRKALSR 186
Score = 44 (20.5 bits), Expect = 1.0e-20, Sum P(2) = 1.0e-20
Identities = 8/17 (47%), Positives = 10/17 (58%)
Query: 231 GYSGRYGGFNRGYDVTG 247
GY + GG+ GYD G
Sbjct: 271 GYGNQGGGYGGGYDNYG 287
Score = 38 (18.4 bits), Expect = 4.3e-20, Sum P(2) = 4.3e-20
Identities = 8/15 (53%), Positives = 9/15 (60%)
Query: 227 PSSLGYSGRYGGFNR 241
P G SG YGG +R
Sbjct: 334 PGGSGGSGGYGGRSR 348
Score = 35 (17.4 bits), Expect = 8.9e-20, Sum P(2) = 8.9e-20
Identities = 7/14 (50%), Positives = 8/14 (57%)
Query: 229 SLGYSGRYGGFNRG 242
S GY G GG+ G
Sbjct: 255 SPGYGGGRGGYGGG 268
Score = 35 (17.4 bits), Expect = 8.9e-20, Sum P(2) = 8.9e-20
Identities = 9/21 (42%), Positives = 9/21 (42%)
Query: 227 PSSLGYSGRYGGFNRGYDVTG 247
P G G YGG GY G
Sbjct: 256 PGYGGGRGGYGGGGPGYGNQG 276
>UNIPROTKB|F6RSR1 [details] [associations]
symbol:HNRNPA0 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0070935 "3'-UTR-mediated mRNA stabilization"
evidence=IEA] [GO:0032496 "response to lipopolysaccharide"
evidence=IEA] [GO:0019901 "protein kinase binding" evidence=IEA]
[GO:0017091 "AU-rich element binding" evidence=IEA] [GO:0006954
"inflammatory response" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0000166 GO:GO:0032496
GO:GO:0006954 Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0070935
GeneTree:ENSGT00700000104255 OMA:GPMKQNL EMBL:DAAA02020383
IPI:IPI00687625 Ensembl:ENSBTAT00000022514 Uniprot:F6RSR1
Length = 310
Score = 218 (81.8 bits), Expect = 1.4e-20, Sum P(2) = 1.4e-20
Identities = 50/137 (36%), Positives = 78/137 (56%)
Query: 5 KTGQPRGFGFVTYADPSVVDKVIEDT-HIINGKQVEIKRTIPK--GAVGSKDFKTKKIFV 61
+T + R FGFVTY++ D + + H ++G VE+KR + + A K KK+FV
Sbjct: 48 QTKRSRCFGFVTYSNVEEADAAMAASPHAVDGNTVELKRAVSREDSARPGAHAKVKKLFV 107
Query: 62 GGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDL-LAKGNK 120
GG+ V E + + F QFG V++ +I+ D + + RGFGF+ F A D + K +
Sbjct: 108 GGLKGDVAEGDLIEHFSQFGTVEKAEIIADKQSGKKRGFGFVYFQNHDAADKAAVVKFHP 167
Query: 121 LELAGAQVEVKKAEPKK 137
++ G +VEVKKA PK+
Sbjct: 168 IQ--GHRVEVKKAVPKE 182
Score = 106 (42.4 bits), Expect = 0.00015, Sum P(2) = 0.00015
Identities = 25/86 (29%), Positives = 46/86 (53%)
Query: 48 AVGSKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDT 107
AV ++ + K+F+GG+ +E + F FG + + ++ + T RSR FGF+T+
Sbjct: 3 AVEMENSQLCKLFIGGLNVQTSESGLRGHFEAFGTLTDCVVVVNPQTKRSRCFGFVTYSN 62
Query: 108 EQAVDDLLAKGNKLELAGAQVEVKKA 133
+ D +A + + G VE+K+A
Sbjct: 63 VEEADAAMA-ASPHAVDGNTVELKRA 87
Score = 39 (18.8 bits), Expect = 1.4e-20, Sum P(2) = 1.4e-20
Identities = 9/19 (47%), Positives = 11/19 (57%)
Query: 231 GYS--GRYGGFNRGYDVTG 247
GY+ G YGG GY+ G
Sbjct: 221 GYNSYGGYGGGGGGYNAYG 239
>UNIPROTKB|A6H6Y0 [details] [associations]
symbol:HNRNPD "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0043488 "regulation of mRNA stability" evidence=IEA]
[GO:0042162 "telomeric DNA binding" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0030529 GO:GO:0043488 GO:GO:0042162 HOGENOM:HOG000234441
HOVERGEN:HBG002295 GeneTree:ENSGT00700000104347 OrthoDB:EOG49W2FZ
OMA:PNQNWNQ InterPro:IPR012956 Pfam:PF08143 EMBL:DAAA02018245
UniGene:Bt.52882 EMBL:BC146038 IPI:IPI00696935 SMR:A6H6Y0
STRING:A6H6Y0 Ensembl:ENSBTAT00000018540 InParanoid:A6H6Y0
Uniprot:A6H6Y0
Length = 355
Score = 214 (80.4 bits), Expect = 1.5e-20, Sum P(2) = 1.5e-20
Identities = 51/137 (37%), Positives = 82/137 (59%)
Query: 3 DRKTGQPRGFGFVTYADPSVVDKVIEDT-HIINGKQVEIKRTIPKGAVGSKDFKTKKIFV 61
D TG+ RGFGFV + + VDKV++ H +NGK ++ KR A+ +K+ KKIFV
Sbjct: 131 DPITGRSRGFGFVLFKESESVDKVMDQKEHKLNGKVIDPKRA---KAMKTKE-PVKKIFV 186
Query: 62 GGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKL 121
GG+ E++ +++F FG+V+ ++ D+ T++ RGF FITF E+ V ++ K K
Sbjct: 187 GGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEK--KY 244
Query: 122 ELAG-AQVEVKKAEPKK 137
G ++ E+K A K+
Sbjct: 245 HNVGLSKCEIKVAMSKE 261
Score = 142 (55.0 bits), Expect = 2.8e-12, Sum P(2) = 2.8e-12
Identities = 30/85 (35%), Positives = 50/85 (58%)
Query: 58 KIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLL-A 116
K+F+GG+ + + KD+F +FG+V + + D T RSRGFGF+ F ++VD ++
Sbjct: 98 KMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQ 157
Query: 117 KGNKLELAGAQVEVKKAEPKKPNLP 141
K +KL G ++ K+A+ K P
Sbjct: 158 KEHKLN--GKVIDPKRAKAMKTKEP 180
Score = 48 (22.0 bits), Expect = 1.5e-20, Sum P(2) = 1.5e-20
Identities = 10/18 (55%), Positives = 13/18 (72%)
Query: 231 GYSGR-YGGFNRGYDVTG 247
GY+ + YGG+ GYD TG
Sbjct: 306 GYNSQGYGGYG-GYDYTG 322
>UNIPROTKB|E2RIX2 [details] [associations]
symbol:HNRNPD "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0043488 "regulation of mRNA stability"
evidence=IEA] [GO:0042162 "telomeric DNA binding" evidence=IEA]
[GO:0030529 "ribonucleoprotein complex" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0030529 GO:GO:0043488 GO:GO:0042162
GeneTree:ENSGT00700000104347 KO:K13044 CTD:3184 OMA:PNQNWNQ
InterPro:IPR012956 Pfam:PF08143 EMBL:AAEX03016719
RefSeq:XP_857957.1 Ensembl:ENSCAFT00000038801 GeneID:478450
KEGG:cfa:478450 Uniprot:E2RIX2
Length = 355
Score = 214 (80.4 bits), Expect = 1.5e-20, Sum P(2) = 1.5e-20
Identities = 51/137 (37%), Positives = 82/137 (59%)
Query: 3 DRKTGQPRGFGFVTYADPSVVDKVIEDT-HIINGKQVEIKRTIPKGAVGSKDFKTKKIFV 61
D TG+ RGFGFV + + VDKV++ H +NGK ++ KR A+ +K+ KKIFV
Sbjct: 131 DPITGRSRGFGFVLFKESESVDKVMDQKEHKLNGKVIDPKRA---KAMKTKE-PVKKIFV 186
Query: 62 GGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKL 121
GG+ E++ +++F FG+V+ ++ D+ T++ RGF FITF E+ V ++ K K
Sbjct: 187 GGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEK--KY 244
Query: 122 ELAG-AQVEVKKAEPKK 137
G ++ E+K A K+
Sbjct: 245 HNVGLSKCEIKVAMSKE 261
Score = 142 (55.0 bits), Expect = 2.8e-12, Sum P(2) = 2.8e-12
Identities = 30/85 (35%), Positives = 50/85 (58%)
Query: 58 KIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLL-A 116
K+F+GG+ + + KD+F +FG+V + + D T RSRGFGF+ F ++VD ++
Sbjct: 98 KMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQ 157
Query: 117 KGNKLELAGAQVEVKKAEPKKPNLP 141
K +KL G ++ K+A+ K P
Sbjct: 158 KEHKLN--GKVIDPKRAKAMKTKEP 180
Score = 48 (22.0 bits), Expect = 1.5e-20, Sum P(2) = 1.5e-20
Identities = 10/18 (55%), Positives = 13/18 (72%)
Query: 231 GYSGR-YGGFNRGYDVTG 247
GY+ + YGG+ GYD TG
Sbjct: 306 GYNSQGYGGYG-GYDYTG 322
>UNIPROTKB|Q14103 [details] [associations]
symbol:HNRNPD "Heterogeneous nuclear ribonucleoprotein D0"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0043488 "regulation of mRNA stability"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IDA;NAS]
[GO:0005634 "nucleus" evidence=IDA;NAS] [GO:0045893 "positive
regulation of transcription, DNA-dependent" evidence=NAS]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=NAS] [GO:0042162 "telomeric DNA binding" evidence=IDA]
[GO:0030529 "ribonucleoprotein complex" evidence=IDA] [GO:0006396
"RNA processing" evidence=TAS] [GO:0006401 "RNA catabolic process"
evidence=TAS] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=TAS] [GO:0005654 "nucleoplasm" evidence=TAS] [GO:0005829
"cytosol" evidence=TAS] [GO:0008380 "RNA splicing" evidence=TAS]
[GO:0010467 "gene expression" evidence=TAS] [GO:0016070 "RNA
metabolic process" evidence=TAS] [GO:0016071 "mRNA metabolic
process" evidence=TAS] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005730 "nucleolus" evidence=IDA] Reactome:REACT_71
Reactome:REACT_21257 InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 EMBL:AF026126
GO:GO:0005829 GO:GO:0045893 GO:GO:0005654 GO:GO:0000166
Reactome:REACT_1675 Gene3D:3.30.70.330 GO:GO:0006351 GO:GO:0003723
GO:GO:0006401 GO:GO:0048255 GO:GO:0030529 EMBL:CH471057
GO:GO:0000398 GO:GO:0042162 eggNOG:COG0724 HOVERGEN:HBG002295
KO:K13044 EMBL:AC124016 OrthoDB:EOG49W2FZ EMBL:D55671 EMBL:D55672
EMBL:D55673 EMBL:D55674 EMBL:AK292707 EMBL:BC002401 EMBL:BC023977
EMBL:BC026015 EMBL:X03910 EMBL:AF039575 EMBL:M94630 IPI:IPI00028888
IPI:IPI00220683 IPI:IPI00220684 IPI:IPI00220685 PIR:A24016
PIR:A44192 PIR:B48138 RefSeq:NP_001003810.1 RefSeq:NP_002129.2
RefSeq:NP_112737.1 RefSeq:NP_112738.1 UniGene:Hs.480073 PDB:1HD0
PDB:1HD1 PDB:1IQT PDB:1WTB PDB:1X0F PDB:2Z5N PDBsum:1HD0
PDBsum:1HD1 PDBsum:1IQT PDBsum:1WTB PDBsum:1X0F PDBsum:2Z5N
ProteinModelPortal:Q14103 SMR:Q14103 IntAct:Q14103
MINT:MINT-5001251 STRING:Q14103 PhosphoSite:Q14103 DMDM:13124489
SWISS-2DPAGE:Q14103 PaxDb:Q14103 PRIDE:Q14103 DNASU:3184
Ensembl:ENST00000313899 Ensembl:ENST00000352301
Ensembl:ENST00000353341 GeneID:3184 KEGG:hsa:3184 UCSC:uc003hmm.1
UCSC:uc003hmn.1 UCSC:uc003hmo.1 UCSC:uc003hmp.1 CTD:3184
GeneCards:GC04M083274 HGNC:HGNC:5036 HPA:HPA004911 MIM:601324
neXtProt:NX_Q14103 PharmGKB:PA29361 InParanoid:Q14103 OMA:PNQNWNQ
PhylomeDB:Q14103 ChiTaRS:HNRNPD EvolutionaryTrace:Q14103
GenomeRNAi:3184 NextBio:12644 PMAP-CutDB:Q14103 ArrayExpress:Q14103
Bgee:Q14103 Genevestigator:Q14103 GermOnline:ENSG00000138668
InterPro:IPR012956 Pfam:PF08143 Uniprot:Q14103
Length = 355
Score = 214 (80.4 bits), Expect = 1.5e-20, Sum P(2) = 1.5e-20
Identities = 51/137 (37%), Positives = 82/137 (59%)
Query: 3 DRKTGQPRGFGFVTYADPSVVDKVIEDT-HIINGKQVEIKRTIPKGAVGSKDFKTKKIFV 61
D TG+ RGFGFV + + VDKV++ H +NGK ++ KR A+ +K+ KKIFV
Sbjct: 131 DPITGRSRGFGFVLFKESESVDKVMDQKEHKLNGKVIDPKRA---KAMKTKE-PVKKIFV 186
Query: 62 GGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKL 121
GG+ E++ +++F FG+V+ ++ D+ T++ RGF FITF E+ V ++ K K
Sbjct: 187 GGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEK--KY 244
Query: 122 ELAG-AQVEVKKAEPKK 137
G ++ E+K A K+
Sbjct: 245 HNVGLSKCEIKVAMSKE 261
Score = 142 (55.0 bits), Expect = 2.8e-12, Sum P(2) = 2.8e-12
Identities = 30/85 (35%), Positives = 50/85 (58%)
Query: 58 KIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLL-A 116
K+F+GG+ + + KD+F +FG+V + + D T RSRGFGF+ F ++VD ++
Sbjct: 98 KMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQ 157
Query: 117 KGNKLELAGAQVEVKKAEPKKPNLP 141
K +KL G ++ K+A+ K P
Sbjct: 158 KEHKLN--GKVIDPKRAKAMKTKEP 180
Score = 48 (22.0 bits), Expect = 1.5e-20, Sum P(2) = 1.5e-20
Identities = 10/18 (55%), Positives = 13/18 (72%)
Query: 231 GYSGR-YGGFNRGYDVTG 247
GY+ + YGG+ GYD TG
Sbjct: 306 GYNSQGYGGYG-GYDYTG 322
>MGI|MGI:101947 [details] [associations]
symbol:Hnrnpd "heterogeneous nuclear ribonucleoprotein D"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=ISO] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0005829 "cytosol" evidence=ISO] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0030529 "ribonucleoprotein complex" evidence=ISO] [GO:0042162
"telomeric DNA binding" evidence=ISO] [GO:0043488 "regulation of
mRNA stability" evidence=IMP] [GO:0048255 "mRNA stabilization"
evidence=ISO] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 MGI:MGI:101947 GO:GO:0005829
GO:GO:0005634 GO:GO:0006355 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0006351 GO:GO:0003723 GO:GO:0048255 GO:GO:0030529
GO:GO:0043488 GO:GO:0042162 eggNOG:COG0724 HOGENOM:HOG000234441
HOVERGEN:HBG002295 GeneTree:ENSGT00700000104347 KO:K13044
OrthoDB:EOG49W2FZ CTD:3184 OMA:PNQNWNQ ChiTaRS:HNRNPD
InterPro:IPR012956 Pfam:PF08143 EMBL:U11273 EMBL:U11274
EMBL:BC011172 EMBL:BC049098 IPI:IPI00230086 IPI:IPI00330958
IPI:IPI00336873 IPI:IPI00336874 PIR:I49069 PIR:I49070
RefSeq:NP_001070733.1 RefSeq:NP_001070734.1 RefSeq:NP_001070735.1
RefSeq:NP_031542.2 UniGene:Mm.150231 ProteinModelPortal:Q60668
SMR:Q60668 DIP:DIP-31411N IntAct:Q60668 STRING:Q60668
PhosphoSite:Q60668 PaxDb:Q60668 PRIDE:Q60668
Ensembl:ENSMUST00000019128 Ensembl:ENSMUST00000172361 GeneID:11991
KEGG:mmu:11991 UCSC:uc008ygt.1 UCSC:uc008ygu.1 InParanoid:Q60668
NextBio:280159 Bgee:Q60668 Genevestigator:Q60668
GermOnline:ENSMUSG00000000568 Uniprot:Q60668
Length = 355
Score = 214 (80.4 bits), Expect = 1.5e-20, Sum P(2) = 1.5e-20
Identities = 51/137 (37%), Positives = 82/137 (59%)
Query: 3 DRKTGQPRGFGFVTYADPSVVDKVIEDT-HIINGKQVEIKRTIPKGAVGSKDFKTKKIFV 61
D TG+ RGFGFV + + VDKV++ H +NGK ++ KR A+ +K+ KKIFV
Sbjct: 131 DPITGRSRGFGFVLFKESESVDKVMDQKEHKLNGKVIDPKRA---KAMKTKE-PVKKIFV 186
Query: 62 GGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKL 121
GG+ E++ +++F FG+V+ ++ D+ T++ RGF FITF E+ V ++ K K
Sbjct: 187 GGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEK--KY 244
Query: 122 ELAG-AQVEVKKAEPKK 137
G ++ E+K A K+
Sbjct: 245 HNVGLSKCEIKVAMSKE 261
Score = 142 (55.0 bits), Expect = 2.8e-12, Sum P(2) = 2.8e-12
Identities = 30/85 (35%), Positives = 50/85 (58%)
Query: 58 KIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLL-A 116
K+F+GG+ + + KD+F +FG+V + + D T RSRGFGF+ F ++VD ++
Sbjct: 98 KMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQ 157
Query: 117 KGNKLELAGAQVEVKKAEPKKPNLP 141
K +KL G ++ K+A+ K P
Sbjct: 158 KEHKLN--GKVIDPKRAKAMKTKEP 180
Score = 48 (22.0 bits), Expect = 1.5e-20, Sum P(2) = 1.5e-20
Identities = 10/18 (55%), Positives = 13/18 (72%)
Query: 231 GYSGR-YGGFNRGYDVTG 247
GY+ + YGG+ GYD TG
Sbjct: 306 GYNSQGYGGYG-GYDYTG 322
>UNIPROTKB|F1LNF1 [details] [associations]
symbol:Hnrnpa2b1 "Heterogeneous nuclear ribonucleoproteins
A2/B1" species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 RGD:1310403
GO:GO:0005730 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0071013 GO:GO:0050658 GO:GO:0043047
GeneTree:ENSGT00700000104376 OMA:HYSARTS IPI:IPI00867934
ProteinModelPortal:F1LNF1 Ensembl:ENSRNOT00000015152
ArrayExpress:F1LNF1 Uniprot:F1LNF1
Length = 352
Score = 217 (81.4 bits), Expect = 1.5e-20, Sum P(2) = 1.5e-20
Identities = 49/137 (35%), Positives = 75/137 (54%)
Query: 1 MKDRKTGQPRGFGFVTYADPSVVDKVIEDT-HIINGKQVEIKRTIPKGAVGSKD--FKTK 57
M+D + + RGFGFVT++ + VD + H I+G+ VE KR + + G K
Sbjct: 52 MRDPASKRSRGFGFVTFSSMAEVDAAMAARPHSIDGRVVEPKRAVAREESGKPGAHVTVK 111
Query: 58 KIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDL-LA 116
K+FVGGI E +D+F ++G + +I+ D + + RGFGF+TFD VD + L
Sbjct: 112 KLFVGGIKEDTEEHHLRDYFEEYGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKIVLQ 171
Query: 117 KGNKLELAGAQVEVKKA 133
K + + G EV+KA
Sbjct: 172 KYHTIN--GHNAEVRKA 186
Score = 141 (54.7 bits), Expect = 9.0e-12, Sum P(2) = 9.0e-12
Identities = 29/91 (31%), Positives = 52/91 (57%)
Query: 43 TIPKGAVGSKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGF 102
T+P + + +K+F+GG+ E+ ++++ Q+G + + +MRD ++ RSRGFGF
Sbjct: 6 TVPLERKKREKEQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGF 65
Query: 103 ITFDTEQAVDDLLAKGNKLELAGAQVEVKKA 133
+TF + VD +A + G VE K+A
Sbjct: 66 VTFSSMAEVDAAMA-ARPHSIDGRVVEPKRA 95
Score = 108 (43.1 bits), Expect = 3.8e-05, Sum P(2) = 3.8e-05
Identities = 19/45 (42%), Positives = 31/45 (68%)
Query: 3 DRKTGQPRGFGFVTYADPSVVDKVI-EDTHIINGKQVEIKRTIPK 46
DR++G+ RGFGFVT+ D VDK++ + H ING E+++ + +
Sbjct: 145 DRQSGKKRGFGFVTFDDHDPVDKIVLQKYHTINGHNAEVRKALSR 189
Score = 44 (20.5 bits), Expect = 1.5e-20, Sum P(2) = 1.5e-20
Identities = 8/17 (47%), Positives = 10/17 (58%)
Query: 231 GYSGRYGGFNRGYDVTG 247
GY + GG+ GYD G
Sbjct: 274 GYGNQGGGYGGGYDNYG 290
Score = 38 (18.4 bits), Expect = 6.3e-20, Sum P(2) = 6.3e-20
Identities = 8/15 (53%), Positives = 9/15 (60%)
Query: 227 PSSLGYSGRYGGFNR 241
P G SG YGG +R
Sbjct: 337 PGGSGGSGGYGGRSR 351
Score = 35 (17.4 bits), Expect = 1.3e-19, Sum P(2) = 1.3e-19
Identities = 7/14 (50%), Positives = 8/14 (57%)
Query: 229 SLGYSGRYGGFNRG 242
S GY G GG+ G
Sbjct: 258 SPGYGGGRGGYGGG 271
Score = 35 (17.4 bits), Expect = 1.3e-19, Sum P(2) = 1.3e-19
Identities = 9/21 (42%), Positives = 9/21 (42%)
Query: 227 PSSLGYSGRYGGFNRGYDVTG 247
P G G YGG GY G
Sbjct: 259 PGYGGGRGGYGGGGPGYGNQG 279
>UNIPROTKB|P09651 [details] [associations]
symbol:HNRNPA1 "Heterogeneous nuclear ribonucleoprotein A1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0019048 "virus-host interaction" evidence=IEA]
[GO:0051028 "mRNA transport" evidence=IEA] [GO:0071013 "catalytic
step 2 spliceosome" evidence=IDA] [GO:0030529 "ribonucleoprotein
complex" evidence=IDA] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IC;TAS] [GO:0003723 "RNA binding" evidence=TAS]
[GO:0006397 "mRNA processing" evidence=TAS] [GO:0003727
"single-stranded RNA binding" evidence=IC] [GO:0005654
"nucleoplasm" evidence=IDA;TAS] [GO:0005737 "cytoplasm"
evidence=IDA] [GO:0006405 "RNA export from nucleus" evidence=IC]
[GO:0051170 "nuclear import" evidence=IDA] [GO:0003697
"single-stranded DNA binding" evidence=IDA] [GO:0051168 "nuclear
export" evidence=IDA] [GO:0005681 "spliceosomal complex"
evidence=IDA] [GO:0008380 "RNA splicing" evidence=TAS] [GO:0010467
"gene expression" evidence=TAS] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005730 "nucleolus" evidence=IDA] [GO:0045111 "intermediate
filament cytoskeleton" evidence=IDA] Reactome:REACT_71
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005737 GO:GO:0019048 GO:GO:0005654
GO:GO:0005730 GO:GO:0000166 Reactome:REACT_1675 GO:GO:0003727
Gene3D:3.30.70.330 EMBL:CH471054 GO:GO:0045111 GO:GO:0003697
Pathway_Interaction_DB:ar_pathway GO:GO:0051028 GO:GO:0000398
GO:GO:0071013 eggNOG:COG0724 GO:GO:0000380 HOVERGEN:HBG002295
GO:GO:0051170 GO:GO:0006405 HOGENOM:HOG000234442 KO:K12741
OrthoDB:EOG4HQDKF CTD:3178 OMA:IEVEIMT EMBL:X12671 EMBL:X06747
EMBL:X79536 EMBL:AK291113 EMBL:AC078778 EMBL:BC002355 EMBL:BC009600
EMBL:BC012158 EMBL:BC033714 EMBL:BC052296 EMBL:BC070315
EMBL:BC074502 EMBL:BC103707 EMBL:X04347 IPI:IPI00215965
IPI:IPI00465365 IPI:IPI00797148 PIR:S02061 PIR:S12520
RefSeq:NP_002127.1 RefSeq:NP_112420.1 UniGene:Hs.546261
UniGene:Hs.655424 PDB:1HA1 PDB:1L3K PDB:1PGZ PDB:1PO6 PDB:1U1K
PDB:1U1L PDB:1U1M PDB:1U1N PDB:1U1O PDB:1U1P PDB:1U1Q PDB:1U1R
PDB:1UP1 PDB:2H4M PDB:2LYV PDB:2UP1 PDBsum:1HA1 PDBsum:1L3K
PDBsum:1PGZ PDBsum:1PO6 PDBsum:1U1K PDBsum:1U1L PDBsum:1U1M
PDBsum:1U1N PDBsum:1U1O PDBsum:1U1P PDBsum:1U1Q PDBsum:1U1R
PDBsum:1UP1 PDBsum:2H4M PDBsum:2LYV PDBsum:2UP1 DisProt:DP00324
ProteinModelPortal:P09651 SMR:P09651 DIP:DIP-29338N IntAct:P09651
MINT:MINT-1035550 STRING:P09651 PhosphoSite:P09651 DMDM:288558857
SWISS-2DPAGE:P09651 PaxDb:P09651 PRIDE:P09651
Ensembl:ENST00000340913 Ensembl:ENST00000546500
Ensembl:ENST00000547276 Ensembl:ENST00000547566 GeneID:3178
KEGG:hsa:3178 UCSC:uc001sfl.3 UCSC:uc001sfm.3 UCSC:uc001sfn.3
GeneCards:GC12P054674 H-InvDB:HIX0032087 H-InvDB:HIX0040127
H-InvDB:HIX0202582 HGNC:HGNC:5031 HPA:CAB010894 HPA:HPA001666
MIM:164017 neXtProt:NX_P09651 PharmGKB:PA162391113
InParanoid:P09651 PhylomeDB:P09651 BindingDB:P09651
ChEMBL:CHEMBL1955709 ChiTaRS:HNRNPA1 EvolutionaryTrace:P09651
GenomeRNAi:3178 NextBio:12614 ArrayExpress:P09651 Bgee:P09651
CleanEx:HS_HNRNPA1 Genevestigator:P09651 GermOnline:ENSG00000135486
Uniprot:P09651
Length = 372
Score = 226 (84.6 bits), Expect = 1.5e-20, Sum P(2) = 1.5e-20
Identities = 53/150 (35%), Positives = 78/150 (52%)
Query: 1 MKDRKTGQPRGFGFVTYADPSVVDKVIEDT-HIINGKQVEIKRTIPK--GAVGSKDFKTK 57
M+D T + RGFGFVTYA VD + H ++G+ VE KR + + K
Sbjct: 46 MRDPNTKRSRGFGFVTYATVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTVK 105
Query: 58 KIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAK 117
KIFVGGI E +D+F Q+G ++ +IM D + + RGF F+TFD +VD ++ +
Sbjct: 106 KIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQ 165
Query: 118 GNKLELAGAQVEVKKAEPKKPNLPQPSYRR 147
+ G EV+KA K+ S +R
Sbjct: 166 KYHT-VNGHNCEVRKALSKQEMASASSSQR 194
Score = 143 (55.4 bits), Expect = 4.6e-11, Sum P(2) = 4.6e-11
Identities = 29/78 (37%), Positives = 50/78 (64%)
Query: 57 KKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLL- 115
+K+F+GG+ ++ + F Q+G + + +MRD +T RSRGFGF+T+ T + VD +
Sbjct: 14 RKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMN 73
Query: 116 AKGNKLELAGAQVEVKKA 133
A+ +K++ G VE K+A
Sbjct: 74 ARPHKVD--GRVVEPKRA 89
Score = 36 (17.7 bits), Expect = 1.5e-20, Sum P(2) = 1.5e-20
Identities = 7/15 (46%), Positives = 8/15 (53%)
Query: 228 SSLGYSGRYGGFNRG 242
S G SG Y +N G
Sbjct: 279 SGYGGSGSYDSYNNG 293
Score = 36 (17.7 bits), Expect = 1.5e-20, Sum P(2) = 1.5e-20
Identities = 7/16 (43%), Positives = 8/16 (50%)
Query: 228 SSLGYSGRYGGFNRGY 243
+ G G YGG GY
Sbjct: 245 NGFGNDGGYGGGGPGY 260
Score = 35 (17.4 bits), Expect = 1.9e-20, Sum P(2) = 1.9e-20
Identities = 7/15 (46%), Positives = 9/15 (60%)
Query: 234 GRYGGFNRGYDVTGD 248
G YGG GY+ G+
Sbjct: 235 GGYGGSGDGYNGFGN 249
>UNIPROTKB|F1Q1K6 [details] [associations]
symbol:HNRNPA2B1 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104376 OMA:HYSARTS EMBL:AAEX03009384
Ensembl:ENSCAFT00000004622 Uniprot:F1Q1K6
Length = 353
Score = 217 (81.4 bits), Expect = 1.6e-20, Sum P(2) = 1.6e-20
Identities = 49/137 (35%), Positives = 75/137 (54%)
Query: 1 MKDRKTGQPRGFGFVTYADPSVVDKVIEDT-HIINGKQVEIKRTIPKGAVGSKD--FKTK 57
M+D + + RGFGFVT++ + VD + H I+G+ VE KR + + G K
Sbjct: 53 MRDPASKRSRGFGFVTFSSMAEVDAAMAARPHSIDGRVVEPKRAVAREESGKPGAHVTVK 112
Query: 58 KIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDL-LA 116
K+FVGGI E +D+F ++G + +I+ D + + RGFGF+TFD VD + L
Sbjct: 113 KLFVGGIKEDTEEHHLRDYFEEYGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKIVLQ 172
Query: 117 KGNKLELAGAQVEVKKA 133
K + + G EV+KA
Sbjct: 173 KYHTIN--GHNAEVRKA 187
Score = 141 (54.7 bits), Expect = 9.1e-12, Sum P(2) = 9.1e-12
Identities = 29/91 (31%), Positives = 52/91 (57%)
Query: 43 TIPKGAVGSKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGF 102
T+P + + +K+F+GG+ E+ ++++ Q+G + + +MRD ++ RSRGFGF
Sbjct: 7 TVPLERKKREKEQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGF 66
Query: 103 ITFDTEQAVDDLLAKGNKLELAGAQVEVKKA 133
+TF + VD +A + G VE K+A
Sbjct: 67 VTFSSMAEVDAAMA-ARPHSIDGRVVEPKRA 96
Score = 108 (43.1 bits), Expect = 3.8e-05, Sum P(2) = 3.8e-05
Identities = 19/45 (42%), Positives = 31/45 (68%)
Query: 3 DRKTGQPRGFGFVTYADPSVVDKVI-EDTHIINGKQVEIKRTIPK 46
DR++G+ RGFGFVT+ D VDK++ + H ING E+++ + +
Sbjct: 146 DRQSGKKRGFGFVTFDDHDPVDKIVLQKYHTINGHNAEVRKALSR 190
Score = 44 (20.5 bits), Expect = 1.6e-20, Sum P(2) = 1.6e-20
Identities = 8/17 (47%), Positives = 10/17 (58%)
Query: 231 GYSGRYGGFNRGYDVTG 247
GY + GG+ GYD G
Sbjct: 275 GYGNQGGGYGGGYDNYG 291
Score = 38 (18.4 bits), Expect = 6.6e-20, Sum P(2) = 6.6e-20
Identities = 8/15 (53%), Positives = 9/15 (60%)
Query: 227 PSSLGYSGRYGGFNR 241
P G SG YGG +R
Sbjct: 338 PGGSGGSGGYGGRSR 352
Score = 35 (17.4 bits), Expect = 1.3e-19, Sum P(2) = 1.3e-19
Identities = 7/14 (50%), Positives = 8/14 (57%)
Query: 229 SLGYSGRYGGFNRG 242
S GY G GG+ G
Sbjct: 259 SPGYGGGRGGYGGG 272
Score = 35 (17.4 bits), Expect = 1.3e-19, Sum P(2) = 1.3e-19
Identities = 9/21 (42%), Positives = 9/21 (42%)
Query: 227 PSSLGYSGRYGGFNRGYDVTG 247
P G G YGG GY G
Sbjct: 260 PGYGGGRGGYGGGGPGYGNQG 280
>UNIPROTKB|P22626 [details] [associations]
symbol:HNRNPA2B1 "Heterogeneous nuclear ribonucleoproteins
A2/B1" species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0048025 "negative regulation of mRNA splicing,
via spliceosome" evidence=IEA] [GO:0097157 "pre-mRNA intronic
binding" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0071013 "catalytic
step 2 spliceosome" evidence=IDA] [GO:0030529 "ribonucleoprotein
complex" evidence=IDA] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IC;TAS] [GO:0006397 "mRNA processing" evidence=IDA]
[GO:0050658 "RNA transport" evidence=IDA] [GO:0043047
"single-stranded telomeric DNA binding" evidence=IDA] [GO:0003723
"RNA binding" evidence=IDA] [GO:0005681 "spliceosomal complex"
evidence=IDA] [GO:0005654 "nucleoplasm" evidence=TAS] [GO:0008380
"RNA splicing" evidence=TAS] [GO:0010467 "gene expression"
evidence=TAS] [GO:0005634 "nucleus" evidence=IDA] [GO:0005730
"nucleolus" evidence=IDA] Reactome:REACT_71 InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005737 GO:GO:0005654 GO:GO:0005730 GO:GO:0000166
Reactome:REACT_1675 Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0000398
GO:GO:0071013 GO:GO:0050658 eggNOG:COG0724 GO:GO:0043047
HOVERGEN:HBG002295 HOGENOM:HOG000234442 OrthoDB:EOG4HQDKF
HPA:HPA001666 CTD:3181 KO:K13158 OMA:HYSARTS EMBL:M29064
EMBL:M29065 EMBL:U09123 EMBL:U09120 EMBL:U09121 EMBL:U09122
EMBL:D28877 EMBL:AK289429 IPI:IPI00396378 IPI:IPI00414696
PIR:A56845 RefSeq:NP_002128.1 RefSeq:NP_112533.1 UniGene:Hs.487774
PDB:1X4B PDBsum:1X4B ProteinModelPortal:P22626 SMR:P22626
IntAct:P22626 MINT:MINT-4998934 STRING:P22626 PhosphoSite:P22626
DMDM:133257 REPRODUCTION-2DPAGE:IPI00396378
REPRODUCTION-2DPAGE:IPI00414696 REPRODUCTION-2DPAGE:P22626
SWISS-2DPAGE:P22626 UCD-2DPAGE:P22626 PaxDb:P22626 PRIDE:P22626
Ensembl:ENST00000354667 Ensembl:ENST00000356674
Ensembl:ENST00000360787 GeneID:3181 KEGG:hsa:3181 UCSC:uc003sxr.4
UCSC:uc003sxs.4 GeneCards:GC07M026229 HGNC:HGNC:5033 HPA:CAB012403
MIM:600124 neXtProt:NX_P22626 PharmGKB:PA162391140 PhylomeDB:P22626
ChiTaRS:HNRNPA2B1 EvolutionaryTrace:P22626 GenomeRNAi:3181
NextBio:12622 PMAP-CutDB:P22626 Bgee:P22626 CleanEx:HS_HNRNPA2B1
Genevestigator:P22626 GermOnline:ENSG00000122566 Uniprot:P22626
Length = 353
Score = 217 (81.4 bits), Expect = 1.6e-20, Sum P(2) = 1.6e-20
Identities = 49/137 (35%), Positives = 75/137 (54%)
Query: 1 MKDRKTGQPRGFGFVTYADPSVVDKVIEDT-HIINGKQVEIKRTIPKGAVGSKD--FKTK 57
M+D + + RGFGFVT++ + VD + H I+G+ VE KR + + G K
Sbjct: 53 MRDPASKRSRGFGFVTFSSMAEVDAAMAARPHSIDGRVVEPKRAVAREESGKPGAHVTVK 112
Query: 58 KIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDL-LA 116
K+FVGGI E +D+F ++G + +I+ D + + RGFGF+TFD VD + L
Sbjct: 113 KLFVGGIKEDTEEHHLRDYFEEYGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKIVLQ 172
Query: 117 KGNKLELAGAQVEVKKA 133
K + + G EV+KA
Sbjct: 173 KYHTIN--GHNAEVRKA 187
Score = 141 (54.7 bits), Expect = 9.1e-12, Sum P(2) = 9.1e-12
Identities = 29/91 (31%), Positives = 52/91 (57%)
Query: 43 TIPKGAVGSKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGF 102
T+P + + +K+F+GG+ E+ ++++ Q+G + + +MRD ++ RSRGFGF
Sbjct: 7 TVPLERKKREKEQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGF 66
Query: 103 ITFDTEQAVDDLLAKGNKLELAGAQVEVKKA 133
+TF + VD +A + G VE K+A
Sbjct: 67 VTFSSMAEVDAAMA-ARPHSIDGRVVEPKRA 96
Score = 108 (43.1 bits), Expect = 3.8e-05, Sum P(2) = 3.8e-05
Identities = 19/45 (42%), Positives = 31/45 (68%)
Query: 3 DRKTGQPRGFGFVTYADPSVVDKVI-EDTHIINGKQVEIKRTIPK 46
DR++G+ RGFGFVT+ D VDK++ + H ING E+++ + +
Sbjct: 146 DRQSGKKRGFGFVTFDDHDPVDKIVLQKYHTINGHNAEVRKALSR 190
Score = 44 (20.5 bits), Expect = 1.6e-20, Sum P(2) = 1.6e-20
Identities = 8/17 (47%), Positives = 10/17 (58%)
Query: 231 GYSGRYGGFNRGYDVTG 247
GY + GG+ GYD G
Sbjct: 275 GYGNQGGGYGGGYDNYG 291
Score = 38 (18.4 bits), Expect = 6.6e-20, Sum P(2) = 6.6e-20
Identities = 8/15 (53%), Positives = 9/15 (60%)
Query: 227 PSSLGYSGRYGGFNR 241
P G SG YGG +R
Sbjct: 338 PGGSGGSGGYGGRSR 352
Score = 35 (17.4 bits), Expect = 1.3e-19, Sum P(2) = 1.3e-19
Identities = 7/14 (50%), Positives = 8/14 (57%)
Query: 229 SLGYSGRYGGFNRG 242
S GY G GG+ G
Sbjct: 259 SPGYGGGRGGYGGG 272
Score = 35 (17.4 bits), Expect = 1.3e-19, Sum P(2) = 1.3e-19
Identities = 9/21 (42%), Positives = 9/21 (42%)
Query: 227 PSSLGYSGRYGGFNRGYDVTG 247
P G G YGG GY G
Sbjct: 260 PGYGGGRGGYGGGGPGYGNQG 280
>MGI|MGI:104819 [details] [associations]
symbol:Hnrnpa2b1 "heterogeneous nuclear ribonucleoprotein
A2/B1" species:10090 "Mus musculus" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=ISO] [GO:0005634
"nucleus" evidence=IDA] [GO:0005681 "spliceosomal complex"
evidence=ISO] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0006397
"mRNA processing" evidence=ISO] [GO:0008380 "RNA splicing"
evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=ISO]
[GO:0043047 "single-stranded telomeric DNA binding" evidence=ISO]
[GO:0048025 "negative regulation of mRNA splicing, via spliceosome"
evidence=IMP;IDA] [GO:0050658 "RNA transport" evidence=ISO]
[GO:0071013 "catalytic step 2 spliceosome" evidence=ISO]
[GO:0097157 "pre-mRNA intronic binding" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 MGI:MGI:104819 GO:GO:0005737 GO:GO:0005654
GO:GO:0008380 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0005681 GO:GO:0097157 GO:GO:0050658 GO:GO:0048025
eggNOG:COG0724 GO:GO:0043047 HOVERGEN:HBG002295 OrthoDB:EOG4HQDKF
CTD:3181 GeneTree:ENSGT00700000104376 KO:K13158 OMA:HYSARTS
ChiTaRS:HNRNPA2B1 EMBL:AF406651 EMBL:AF452567 EMBL:AF073990
EMBL:AF073993 EMBL:AK089012 EMBL:AK137214 EMBL:BC059107
EMBL:BC141253 IPI:IPI00405058 IPI:IPI00622847 IPI:IPI00828488
RefSeq:NP_058086.2 RefSeq:NP_872591.1 RefSeq:XP_001473875.2
UniGene:Mm.155896 ProteinModelPortal:O88569 SMR:O88569
IntAct:O88569 STRING:O88569 PhosphoSite:O88569
REPRODUCTION-2DPAGE:IPI00405058 REPRODUCTION-2DPAGE:O88569
SWISS-2DPAGE:O88569 PaxDb:O88569 PRIDE:O88569
Ensembl:ENSMUST00000069949 Ensembl:ENSMUST00000090002
Ensembl:ENSMUST00000114459 GeneID:100045191 GeneID:53379
KEGG:mmu:100045191 KEGG:mmu:53379 UCSC:uc009bxm.1 UCSC:uc009bxn.1
NextBio:458663 Bgee:O88569 CleanEx:MM_HNRNPA2B1
Genevestigator:O88569 GermOnline:ENSMUSG00000004980 Uniprot:O88569
Length = 353
Score = 217 (81.4 bits), Expect = 1.6e-20, Sum P(2) = 1.6e-20
Identities = 49/137 (35%), Positives = 75/137 (54%)
Query: 1 MKDRKTGQPRGFGFVTYADPSVVDKVIEDT-HIINGKQVEIKRTIPKGAVGSKD--FKTK 57
M+D + + RGFGFVT++ + VD + H I+G+ VE KR + + G K
Sbjct: 53 MRDPASKRSRGFGFVTFSSMAEVDAAMAARPHSIDGRVVEPKRAVAREESGKPGAHVTVK 112
Query: 58 KIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDL-LA 116
K+FVGGI E +D+F ++G + +I+ D + + RGFGF+TFD VD + L
Sbjct: 113 KLFVGGIKEDTEEHHLRDYFEEYGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKIVLQ 172
Query: 117 KGNKLELAGAQVEVKKA 133
K + + G EV+KA
Sbjct: 173 KYHTIN--GHNAEVRKA 187
Score = 141 (54.7 bits), Expect = 9.1e-12, Sum P(2) = 9.1e-12
Identities = 29/91 (31%), Positives = 52/91 (57%)
Query: 43 TIPKGAVGSKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGF 102
T+P + + +K+F+GG+ E+ ++++ Q+G + + +MRD ++ RSRGFGF
Sbjct: 7 TVPLERKKREKEQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGF 66
Query: 103 ITFDTEQAVDDLLAKGNKLELAGAQVEVKKA 133
+TF + VD +A + G VE K+A
Sbjct: 67 VTFSSMAEVDAAMA-ARPHSIDGRVVEPKRA 96
Score = 108 (43.1 bits), Expect = 3.8e-05, Sum P(2) = 3.8e-05
Identities = 19/45 (42%), Positives = 31/45 (68%)
Query: 3 DRKTGQPRGFGFVTYADPSVVDKVI-EDTHIINGKQVEIKRTIPK 46
DR++G+ RGFGFVT+ D VDK++ + H ING E+++ + +
Sbjct: 146 DRQSGKKRGFGFVTFDDHDPVDKIVLQKYHTINGHNAEVRKALSR 190
Score = 44 (20.5 bits), Expect = 1.6e-20, Sum P(2) = 1.6e-20
Identities = 8/17 (47%), Positives = 10/17 (58%)
Query: 231 GYSGRYGGFNRGYDVTG 247
GY + GG+ GYD G
Sbjct: 275 GYGNQGGGYGGGYDNYG 291
Score = 38 (18.4 bits), Expect = 6.6e-20, Sum P(2) = 6.6e-20
Identities = 8/15 (53%), Positives = 9/15 (60%)
Query: 227 PSSLGYSGRYGGFNR 241
P G SG YGG +R
Sbjct: 338 PGGSGGSGGYGGRSR 352
Score = 35 (17.4 bits), Expect = 1.3e-19, Sum P(2) = 1.3e-19
Identities = 7/14 (50%), Positives = 8/14 (57%)
Query: 229 SLGYSGRYGGFNRG 242
S GY G GG+ G
Sbjct: 259 SPGYGGGRGGYGGG 272
Score = 35 (17.4 bits), Expect = 1.3e-19, Sum P(2) = 1.3e-19
Identities = 9/21 (42%), Positives = 9/21 (42%)
Query: 227 PSSLGYSGRYGGFNRGYDVTG 247
P G G YGG GY G
Sbjct: 260 PGYGGGRGGYGGGGPGYGNQG 280
>RGD|1310403 [details] [associations]
symbol:Hnrnpa2b1 "heterogeneous nuclear ribonucleoprotein A2/B1"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA;ISO]
[GO:0005634 "nucleus" evidence=ISO] [GO:0005654 "nucleoplasm"
evidence=IEA] [GO:0005681 "spliceosomal complex" evidence=IEA;ISO]
[GO:0005730 "nucleolus" evidence=IEA;ISO] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA;ISO]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=ISO;ISS] [GO:0043047
"single-stranded telomeric DNA binding" evidence=IEA;ISO]
[GO:0048025 "negative regulation of mRNA splicing, via spliceosome"
evidence=IEA;ISO] [GO:0050658 "RNA transport" evidence=IEA;ISO]
[GO:0071013 "catalytic step 2 spliceosome" evidence=IEA;ISO]
[GO:0097157 "pre-mRNA intronic binding" evidence=IEA;ISO]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 RGD:1310403 GO:GO:0005737 GO:GO:0005654 GO:GO:0005730
GO:GO:0008380 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0030529 GO:GO:0071013 GO:GO:0050658
eggNOG:COG0724 GO:GO:0043047 HOGENOM:HOG000234442 OrthoDB:EOG4HQDKF
CTD:3181 KO:K13158 EMBL:AB006815 EMBL:AB006816 EMBL:AB006817
EMBL:AB006818 IPI:IPI00212969 IPI:IPI00867934 IPI:IPI00923129
IPI:IPI00923135 RefSeq:NP_001098083.1 UniGene:Rn.231911
ProteinModelPortal:A7VJC2 SMR:A7VJC2 STRING:A7VJC2 PRIDE:A7VJC2
GeneID:362361 KEGG:rno:362361 UCSC:RGD:1310403 HOVERGEN:HBG108415
InParanoid:A7VJC2 NextBio:679650 ArrayExpress:A7VJC2
Genevestigator:A7VJC2 Uniprot:A7VJC2
Length = 353
Score = 217 (81.4 bits), Expect = 1.6e-20, Sum P(2) = 1.6e-20
Identities = 49/137 (35%), Positives = 75/137 (54%)
Query: 1 MKDRKTGQPRGFGFVTYADPSVVDKVIEDT-HIINGKQVEIKRTIPKGAVGSKD--FKTK 57
M+D + + RGFGFVT++ + VD + H I+G+ VE KR + + G K
Sbjct: 53 MRDPASKRSRGFGFVTFSSMAEVDAAMAARPHSIDGRVVEPKRAVAREESGKPGAHVTVK 112
Query: 58 KIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDL-LA 116
K+FVGGI E +D+F ++G + +I+ D + + RGFGF+TFD VD + L
Sbjct: 113 KLFVGGIKEDTEEHHLRDYFEEYGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKIFLQ 172
Query: 117 KGNKLELAGAQVEVKKA 133
K + + G EV+KA
Sbjct: 173 KYHTIN--GHNAEVRKA 187
Score = 141 (54.7 bits), Expect = 9.1e-12, Sum P(2) = 9.1e-12
Identities = 29/91 (31%), Positives = 52/91 (57%)
Query: 43 TIPKGAVGSKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGF 102
T+P + + +K+F+GG+ E+ ++++ Q+G + + +MRD ++ RSRGFGF
Sbjct: 7 TVPLERKKREKEQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGF 66
Query: 103 ITFDTEQAVDDLLAKGNKLELAGAQVEVKKA 133
+TF + VD +A + G VE K+A
Sbjct: 67 VTFSSMAEVDAAMA-ARPHSIDGRVVEPKRA 96
Score = 107 (42.7 bits), Expect = 5.2e-05, Sum P(2) = 5.2e-05
Identities = 19/45 (42%), Positives = 31/45 (68%)
Query: 3 DRKTGQPRGFGFVTYADPSVVDKV-IEDTHIINGKQVEIKRTIPK 46
DR++G+ RGFGFVT+ D VDK+ ++ H ING E+++ + +
Sbjct: 146 DRQSGKKRGFGFVTFDDHDPVDKIFLQKYHTINGHNAEVRKALSR 190
Score = 44 (20.5 bits), Expect = 1.6e-20, Sum P(2) = 1.6e-20
Identities = 8/17 (47%), Positives = 10/17 (58%)
Query: 231 GYSGRYGGFNRGYDVTG 247
GY + GG+ GYD G
Sbjct: 275 GYGNQGGGYGGGYDNYG 291
Score = 38 (18.4 bits), Expect = 6.6e-20, Sum P(2) = 6.6e-20
Identities = 8/15 (53%), Positives = 9/15 (60%)
Query: 227 PSSLGYSGRYGGFNR 241
P G SG YGG +R
Sbjct: 338 PGGSGGSGGYGGRSR 352
Score = 35 (17.4 bits), Expect = 1.3e-19, Sum P(2) = 1.3e-19
Identities = 7/14 (50%), Positives = 8/14 (57%)
Query: 229 SLGYSGRYGGFNRG 242
S GY G GG+ G
Sbjct: 259 SPGYGGGRGGYGGG 272
Score = 35 (17.4 bits), Expect = 1.3e-19, Sum P(2) = 1.3e-19
Identities = 9/21 (42%), Positives = 9/21 (42%)
Query: 227 PSSLGYSGRYGGFNRGYDVTG 247
P G G YGG GY G
Sbjct: 260 PGYGGGRGGYGGGGPGYGNQG 280
>UNIPROTKB|E2QYP1 [details] [associations]
symbol:HNRNPA1 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00550000074566 EMBL:AAEX03014967
ProteinModelPortal:E2QYP1 PRIDE:E2QYP1 Ensembl:ENSCAFT00000010628
NextBio:20853043 Uniprot:E2QYP1
Length = 373
Score = 226 (84.6 bits), Expect = 1.6e-20, Sum P(2) = 1.6e-20
Identities = 53/150 (35%), Positives = 78/150 (52%)
Query: 1 MKDRKTGQPRGFGFVTYADPSVVDKVIEDT-HIINGKQVEIKRTIPK--GAVGSKDFKTK 57
M+D T + RGFGFVTYA VD + H ++G+ VE KR + + K
Sbjct: 46 MRDPNTKRSRGFGFVTYATVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTVK 105
Query: 58 KIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAK 117
KIFVGGI E +D+F Q+G ++ +IM D + + RGF F+TFD +VD ++ +
Sbjct: 106 KIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQ 165
Query: 118 GNKLELAGAQVEVKKAEPKKPNLPQPSYRR 147
+ G EV+KA K+ S +R
Sbjct: 166 KYHT-VNGHNCEVRKALSKQEMASASSSQR 194
Score = 143 (55.4 bits), Expect = 4.7e-11, Sum P(2) = 4.7e-11
Identities = 29/78 (37%), Positives = 50/78 (64%)
Query: 57 KKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLL- 115
+K+F+GG+ ++ + F Q+G + + +MRD +T RSRGFGF+T+ T + VD +
Sbjct: 14 RKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMN 73
Query: 116 AKGNKLELAGAQVEVKKA 133
A+ +K++ G VE K+A
Sbjct: 74 ARPHKVD--GRVVEPKRA 89
Score = 36 (17.7 bits), Expect = 1.6e-20, Sum P(2) = 1.6e-20
Identities = 7/15 (46%), Positives = 8/15 (53%)
Query: 228 SSLGYSGRYGGFNRG 242
S G SG Y +N G
Sbjct: 279 SGYGGSGSYDSYNNG 293
Score = 36 (17.7 bits), Expect = 1.6e-20, Sum P(2) = 1.6e-20
Identities = 7/16 (43%), Positives = 8/16 (50%)
Query: 228 SSLGYSGRYGGFNRGY 243
+ G G YGG GY
Sbjct: 245 NGFGNDGGYGGGGPGY 260
Score = 35 (17.4 bits), Expect = 2.0e-20, Sum P(2) = 2.0e-20
Identities = 7/15 (46%), Positives = 9/15 (60%)
Query: 234 GRYGGFNRGYDVTGD 248
G YGG GY+ G+
Sbjct: 235 GGYGGSGDGYNGFGN 249
>UNIPROTKB|D4ACJ7 [details] [associations]
symbol:Hnrnpa1 "RCG50547, isoform CRA_b" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:69234 GO:GO:0005737 GO:GO:0005654 GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003697 GO:GO:0071013 GO:GO:0051168
EMBL:CH474035 GO:GO:0000380 GO:GO:0051170 OrthoDB:EOG4HQDKF
OMA:IEVEIMT IPI:IPI00781944 SMR:D4ACJ7 Ensembl:ENSRNOT00000055284
Uniprot:D4ACJ7
Length = 373
Score = 226 (84.6 bits), Expect = 1.6e-20, Sum P(2) = 1.6e-20
Identities = 53/150 (35%), Positives = 78/150 (52%)
Query: 1 MKDRKTGQPRGFGFVTYADPSVVDKVIEDT-HIINGKQVEIKRTIPK--GAVGSKDFKTK 57
M+D T + RGFGFVTYA VD + H ++G+ VE KR + + K
Sbjct: 46 MRDPNTKRSRGFGFVTYATVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTVK 105
Query: 58 KIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAK 117
KIFVGGI E +D+F Q+G ++ +IM D + + RGF F+TFD +VD ++ +
Sbjct: 106 KIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQ 165
Query: 118 GNKLELAGAQVEVKKAEPKKPNLPQPSYRR 147
+ G EV+KA K+ S +R
Sbjct: 166 KYHT-VNGHNCEVRKALSKQEMASASSSQR 194
Score = 143 (55.4 bits), Expect = 4.7e-11, Sum P(2) = 4.7e-11
Identities = 29/78 (37%), Positives = 50/78 (64%)
Query: 57 KKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLL- 115
+K+F+GG+ ++ + F Q+G + + +MRD +T RSRGFGF+T+ T + VD +
Sbjct: 14 RKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMN 73
Query: 116 AKGNKLELAGAQVEVKKA 133
A+ +K++ G VE K+A
Sbjct: 74 ARPHKVD--GRVVEPKRA 89
Score = 36 (17.7 bits), Expect = 1.6e-20, Sum P(2) = 1.6e-20
Identities = 7/15 (46%), Positives = 8/15 (53%)
Query: 228 SSLGYSGRYGGFNRG 242
S G SG Y +N G
Sbjct: 279 SGYGGSGSYDSYNNG 293
Score = 36 (17.7 bits), Expect = 1.6e-20, Sum P(2) = 1.6e-20
Identities = 7/16 (43%), Positives = 8/16 (50%)
Query: 228 SSLGYSGRYGGFNRGY 243
+ G G YGG GY
Sbjct: 245 NGFGNDGGYGGGGPGY 260
Score = 35 (17.4 bits), Expect = 2.0e-20, Sum P(2) = 2.0e-20
Identities = 7/15 (46%), Positives = 9/15 (60%)
Query: 234 GRYGGFNRGYDVTGD 248
G YGG GY+ G+
Sbjct: 235 GGYGGSGDGYNGFGN 249
>UNIPROTKB|F1Q3G7 [details] [associations]
symbol:HNRNPA1 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005737 GO:GO:0005654 GO:GO:0005730
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003697 GO:GO:0071013
GO:GO:0051168 GO:GO:0000380 GO:GO:0051170
GeneTree:ENSGT00550000074566 EMBL:AAEX03014967
Ensembl:ENSCAFT00000010627 OMA:QAQQGGW Uniprot:F1Q3G7
Length = 384
Score = 226 (84.6 bits), Expect = 2.1e-20, Sum P(2) = 2.1e-20
Identities = 53/150 (35%), Positives = 78/150 (52%)
Query: 1 MKDRKTGQPRGFGFVTYADPSVVDKVIEDT-HIINGKQVEIKRTIPK--GAVGSKDFKTK 57
M+D T + RGFGFVTYA VD + H ++G+ VE KR + + K
Sbjct: 67 MRDPNTKRSRGFGFVTYATVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTVK 126
Query: 58 KIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAK 117
KIFVGGI E +D+F Q+G ++ +IM D + + RGF F+TFD +VD ++ +
Sbjct: 127 KIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQ 186
Query: 118 GNKLELAGAQVEVKKAEPKKPNLPQPSYRR 147
+ G EV+KA K+ S +R
Sbjct: 187 KYHT-VNGHNCEVRKALSKQEMASASSSQR 215
Score = 144 (55.7 bits), Expect = 4.1e-11, Sum P(2) = 4.1e-11
Identities = 32/94 (34%), Positives = 56/94 (59%)
Query: 41 KRTIPKGAVGSKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGF 100
K+ PK + + +K+F+GG+ ++ + F Q+G + + +MRD +T RSRGF
Sbjct: 21 KKARPKSP--KEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGF 78
Query: 101 GFITFDTEQAVDDLL-AKGNKLELAGAQVEVKKA 133
GF+T+ T + VD + A+ +K++ G VE K+A
Sbjct: 79 GFVTYATVEEVDAAMNARPHKVD--GRVVEPKRA 110
Score = 36 (17.7 bits), Expect = 2.1e-20, Sum P(2) = 2.1e-20
Identities = 7/15 (46%), Positives = 8/15 (53%)
Query: 228 SSLGYSGRYGGFNRG 242
S G SG Y +N G
Sbjct: 300 SGYGGSGSYDSYNNG 314
Score = 36 (17.7 bits), Expect = 2.1e-20, Sum P(2) = 2.1e-20
Identities = 7/16 (43%), Positives = 8/16 (50%)
Query: 228 SSLGYSGRYGGFNRGY 243
+ G G YGG GY
Sbjct: 266 NGFGNDGGYGGGGPGY 281
Score = 35 (17.4 bits), Expect = 2.7e-20, Sum P(2) = 2.7e-20
Identities = 7/15 (46%), Positives = 9/15 (60%)
Query: 234 GRYGGFNRGYDVTGD 248
G YGG GY+ G+
Sbjct: 256 GGYGGSGDGYNGFGN 270
>UNIPROTKB|F1NBB6 [details] [associations]
symbol:LOC100859627 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR021662
Pfam:PF11627 GeneTree:ENSGT00700000104376 EMBL:AADN02020007
EMBL:AADN02020008 EMBL:AADN02020009 EMBL:AADN02020010
EMBL:AADN02020011 EMBL:AADN02020012 EMBL:AADN02020013
IPI:IPI00818847 Ensembl:ENSGALT00000029498 Uniprot:F1NBB6
Length = 310
Score = 218 (81.8 bits), Expect = 2.2e-20, Sum P(2) = 2.2e-20
Identities = 48/140 (34%), Positives = 75/140 (53%)
Query: 1 MKDRKTGQPRGFGFVTYADPSVVDKVIEDT-HIINGKQVEIKRTIPK--GAVGSKDFKTK 57
M+D +T + RGFGFVTY+ VD + H ++G+ VE KR + + K
Sbjct: 53 MRDPQTKRSRGFGFVTYSCVEEVDAAMSARPHKVDGRVVEPKRAVSREDSVKPGAHLTVK 112
Query: 58 KIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAK 117
KIFVGGI E +++F ++G ++ ++M D + + RGF F+TFD VD ++ +
Sbjct: 113 KIFVGGIKEDTEEYNLREYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVVQ 172
Query: 118 GNKLELAGAQVEVKKAEPKK 137
+ G EVKKA K+
Sbjct: 173 KYHT-INGHNCEVKKALSKQ 191
Score = 145 (56.1 bits), Expect = 9.4e-12, Sum P(2) = 9.4e-12
Identities = 32/99 (32%), Positives = 59/99 (59%)
Query: 46 KGAVG---SKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGF 102
KG VG + + +K+F+GG+ +D ++ F ++G + + +MRD T RSRGFGF
Sbjct: 7 KGKVGHEPKEPEQLRKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGF 66
Query: 103 ITFDTEQAVDDLL-AKGNKLELAGAQVEVKKAEPKKPNL 140
+T+ + VD + A+ +K++ G VE K+A ++ ++
Sbjct: 67 VTYSCVEEVDAAMSARPHKVD--GRVVEPKRAVSREDSV 103
Score = 37 (18.1 bits), Expect = 2.2e-20, Sum P(2) = 2.2e-20
Identities = 7/11 (63%), Positives = 7/11 (63%)
Query: 234 GRYGGFNRGYD 244
G YGG GYD
Sbjct: 231 GGYGGGGGGYD 241
Score = 35 (17.4 bits), Expect = 3.6e-20, Sum P(2) = 3.6e-20
Identities = 7/17 (41%), Positives = 9/17 (52%)
Query: 231 GYSGRYGGFNRGYDVTG 247
G G Y G+N G + G
Sbjct: 235 GGGGGYDGYNEGGNFGG 251
>UNIPROTKB|F1LM82 [details] [associations]
symbol:Hnrnpa2b1 "Heterogeneous nuclear ribonucleoproteins
A2/B1" species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 RGD:1310403 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR021662 Pfam:PF11627
GeneTree:ENSGT00700000104376 IPI:IPI00923129
Ensembl:ENSRNOT00000015325 ArrayExpress:F1LM82 Uniprot:F1LM82
Length = 312
Score = 217 (81.4 bits), Expect = 2.2e-20, Sum P(2) = 2.2e-20
Identities = 49/137 (35%), Positives = 75/137 (54%)
Query: 1 MKDRKTGQPRGFGFVTYADPSVVDKVIEDT-HIINGKQVEIKRTIPKGAVGSKD--FKTK 57
M+D + + RGFGFVT++ + VD + H I+G+ VE KR + + G K
Sbjct: 52 MRDPASKRSRGFGFVTFSSMAEVDAAMAARPHSIDGRVVEPKRAVAREESGKPGAHVTVK 111
Query: 58 KIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDL-LA 116
K+FVGGI E +D+F ++G + +I+ D + + RGFGF+TFD VD + L
Sbjct: 112 KLFVGGIKEDTEEHHLRDYFEEYGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKIVLQ 171
Query: 117 KGNKLELAGAQVEVKKA 133
K + + G EV+KA
Sbjct: 172 KYHTIN--GHNAEVRKA 186
Score = 141 (54.7 bits), Expect = 2.1e-11, Sum P(2) = 2.1e-11
Identities = 29/91 (31%), Positives = 52/91 (57%)
Query: 43 TIPKGAVGSKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGF 102
T+P + + +K+F+GG+ E+ ++++ Q+G + + +MRD ++ RSRGFGF
Sbjct: 6 TVPLERKKREKEQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGF 65
Query: 103 ITFDTEQAVDDLLAKGNKLELAGAQVEVKKA 133
+TF + VD +A + G VE K+A
Sbjct: 66 VTFSSMAEVDAAMA-ARPHSIDGRVVEPKRA 95
Score = 108 (43.1 bits), Expect = 0.00010, Sum P(2) = 0.00010
Identities = 19/45 (42%), Positives = 31/45 (68%)
Query: 3 DRKTGQPRGFGFVTYADPSVVDKVI-EDTHIINGKQVEIKRTIPK 46
DR++G+ RGFGFVT+ D VDK++ + H ING E+++ + +
Sbjct: 145 DRQSGKKRGFGFVTFDDHDPVDKIVLQKYHTINGHNAEVRKALSR 189
Score = 38 (18.4 bits), Expect = 2.2e-20, Sum P(2) = 2.2e-20
Identities = 8/15 (53%), Positives = 9/15 (60%)
Query: 227 PSSLGYSGRYGGFNR 241
P G SG YGG +R
Sbjct: 297 PGGSGGSGGYGGRSR 311
>UNIPROTKB|E9PSU5 [details] [associations]
symbol:E9PSU5 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104376 IPI:IPI00364363 PRIDE:E9PSU5
Ensembl:ENSRNOT00000022054 Uniprot:E9PSU5
Length = 363
Score = 221 (82.9 bits), Expect = 2.3e-20, Sum P(2) = 2.3e-20
Identities = 48/139 (34%), Positives = 74/139 (53%)
Query: 1 MKDRKTGQPRGFGFVTYADPSVVDKVIEDTHIINGKQVEIKRTIPK--GAVGSKDFKTKK 58
M+D +T + RGFGFVTY+ V + H ++G+ VE KR + + KK
Sbjct: 52 MRDPQTKRSRGFGFVTYSCEEVDAAMCARPHKVDGRVVEPKRAVSREDSVKPGAHLTVKK 111
Query: 59 IFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKG 118
IFVGGI E +D+F ++G ++ ++M D + + RGF F+TFD VD ++ +
Sbjct: 112 IFVGGIKEDTGEYNLRDYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVVQK 171
Query: 119 NKLELAGAQVEVKKAEPKK 137
+ G EVKKA K+
Sbjct: 172 YHT-INGHNCEVKKALSKQ 189
Score = 122 (48.0 bits), Expect = 1.0e-06, Sum P(2) = 1.0e-06
Identities = 27/91 (29%), Positives = 52/91 (57%)
Query: 57 KKIFVGGIPSSVNEDEFKDFFM-------QFGDVQEHQIMRDHSTSRSRGFGFITFDTEQ 109
+K+F+GG+ +D ++ F ++G + + +MRD T RSRGFGF+T+ E+
Sbjct: 13 RKLFIGGLSFETTDDSLREHFEGWRDGSEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCEE 72
Query: 110 AVDDLLAKGNKLELAGAQVEVKKAEPKKPNL 140
+ A+ +K++ G VE K+A ++ ++
Sbjct: 73 VDAAMCARPHKVD--GRVVEPKRAVSREDSV 101
Score = 39 (18.8 bits), Expect = 2.3e-20, Sum P(2) = 2.3e-20
Identities = 10/19 (52%), Positives = 10/19 (52%)
Query: 231 GYSGR--YGGFNRGYDVTG 247
GYS R YGG GY G
Sbjct: 266 GYSSRGGYGGGGPGYGNQG 284
Score = 38 (18.4 bits), Expect = 3.0e-20, Sum P(2) = 3.0e-20
Identities = 8/17 (47%), Positives = 10/17 (58%)
Query: 231 GYSGRYGGFNRGYDVTG 247
G G YGG + GY+ G
Sbjct: 239 GSRGSYGGGDGGYNGFG 255
Score = 36 (17.7 bits), Expect = 4.8e-20, Sum P(2) = 4.8e-20
Identities = 7/17 (41%), Positives = 10/17 (58%)
Query: 231 GYSGRYGGFNRGYDVTG 247
G +G Y G+N G + G
Sbjct: 289 GGAGGYDGYNEGGNFGG 305
Score = 35 (17.4 bits), Expect = 6.1e-20, Sum P(2) = 6.1e-20
Identities = 7/11 (63%), Positives = 7/11 (63%)
Query: 234 GRYGGFNRGYD 244
G YGG GYD
Sbjct: 285 GGYGGGAGGYD 295
>UNIPROTKB|F1RX74 [details] [associations]
symbol:HNRNPA2B1 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0097157 "pre-mRNA intronic binding" evidence=IEA]
[GO:0071013 "catalytic step 2 spliceosome" evidence=IEA]
[GO:0050658 "RNA transport" evidence=IEA] [GO:0048025 "negative
regulation of mRNA splicing, via spliceosome" evidence=IEA]
[GO:0043047 "single-stranded telomeric DNA binding" evidence=IEA]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005730 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0071013 GO:GO:0050658
GO:GO:0043047 GeneTree:ENSGT00700000104376 OMA:HYSARTS
EMBL:CU469303 Ensembl:ENSSSCT00000017244 Uniprot:F1RX74
Length = 353
Score = 215 (80.7 bits), Expect = 2.8e-20, Sum P(2) = 2.8e-20
Identities = 50/137 (36%), Positives = 74/137 (54%)
Query: 1 MKDRKTGQPRGFGFVTYADPSVVDKVIEDT-HIINGKQVEIKRTIPKGAVGSKD--FKTK 57
M+D + + RGFGFVT++ + VD + H I+G+ VE KR + + G K
Sbjct: 53 MRDPASKRSRGFGFVTFSSMAEVDAAMAARPHSIDGRVVEPKRAVAREESGKPGAHVTVK 112
Query: 58 KIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDL-LA 116
K+FVGGI E +D+F ++G V +I+ D + + RGFGF TFD VD + L
Sbjct: 113 KLFVGGIKEDTEEHHLRDYFEEYGKVDTIEIITDRQSGKKRGFGFFTFDDHDPVDKIVLQ 172
Query: 117 KGNKLELAGAQVEVKKA 133
K + + G EV+KA
Sbjct: 173 KYHTIN--GHNAEVRKA 187
Score = 141 (54.7 bits), Expect = 9.1e-12, Sum P(2) = 9.1e-12
Identities = 29/91 (31%), Positives = 52/91 (57%)
Query: 43 TIPKGAVGSKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGF 102
T+P + + +K+F+GG+ E+ ++++ Q+G + + +MRD ++ RSRGFGF
Sbjct: 7 TVPLERKKREKEQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGF 66
Query: 103 ITFDTEQAVDDLLAKGNKLELAGAQVEVKKA 133
+TF + VD +A + G VE K+A
Sbjct: 67 VTFSSMAEVDAAMA-ARPHSIDGRVVEPKRA 96
Score = 103 (41.3 bits), Expect = 0.00019, Sum P(2) = 0.00019
Identities = 18/45 (40%), Positives = 30/45 (66%)
Query: 3 DRKTGQPRGFGFVTYADPSVVDKVI-EDTHIINGKQVEIKRTIPK 46
DR++G+ RGFGF T+ D VDK++ + H ING E+++ + +
Sbjct: 146 DRQSGKKRGFGFFTFDDHDPVDKIVLQKYHTINGHNAEVRKALSR 190
Score = 44 (20.5 bits), Expect = 2.8e-20, Sum P(2) = 2.8e-20
Identities = 8/17 (47%), Positives = 10/17 (58%)
Query: 231 GYSGRYGGFNRGYDVTG 247
GY + GG+ GYD G
Sbjct: 275 GYGNQGGGYGGGYDNYG 291
Score = 38 (18.4 bits), Expect = 1.2e-19, Sum P(2) = 1.2e-19
Identities = 8/15 (53%), Positives = 9/15 (60%)
Query: 227 PSSLGYSGRYGGFNR 241
P G SG YGG +R
Sbjct: 338 PGGSGGSGGYGGRSR 352
Score = 35 (17.4 bits), Expect = 2.4e-19, Sum P(2) = 2.4e-19
Identities = 9/21 (42%), Positives = 9/21 (42%)
Query: 227 PSSLGYSGRYGGFNRGYDVTG 247
P G G YGG GY G
Sbjct: 260 PGYGGGRGGYGGGGPGYGNQG 280
>MGI|MGI:1924384 [details] [associations]
symbol:Hnrnpa0 "heterogeneous nuclear ribonucleoprotein A0"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0006954 "inflammatory response" evidence=IDA]
[GO:0017091 "AU-rich element binding" evidence=ISO;IDA] [GO:0019901
"protein kinase binding" evidence=ISO] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] [GO:0032496 "response to
lipopolysaccharide" evidence=IDA] [GO:0070935 "3'-UTR-mediated mRNA
stabilization" evidence=IDA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 MGI:MGI:1924384
GO:GO:0005634 GO:GO:0000166 GO:GO:0032496 GO:GO:0006954
Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0030529 eggNOG:COG0724
HSSP:P09651 GO:GO:0070935 HOVERGEN:HBG002295
GeneTree:ENSGT00700000104255 HOGENOM:HOG000234442 CTD:10949
KO:K12894 OrthoDB:EOG4W6NX4 EMBL:AK019388 EMBL:AC165251
IPI:IPI00109813 RefSeq:NP_084148.1 UniGene:Mm.490274
ProteinModelPortal:Q9CX86 SMR:Q9CX86 STRING:Q9CX86
PhosphoSite:Q9CX86 PaxDb:Q9CX86 PRIDE:Q9CX86
Ensembl:ENSMUST00000007980 GeneID:77134 KEGG:mmu:77134
UCSC:uc007qtf.2 InParanoid:Q9CX86 OMA:EDNQHAL ChiTaRS:HNRNPA0
NextBio:346544 Bgee:Q9CX86 Genevestigator:Q9CX86 Uniprot:Q9CX86
Length = 305
Score = 218 (81.8 bits), Expect = 2.8e-20, Sum P(2) = 2.8e-20
Identities = 50/137 (36%), Positives = 79/137 (57%)
Query: 5 KTGQPRGFGFVTYADPSVVDKVIEDT-HIINGKQVEIKRTIPK--GAVGSKDFKTKKIFV 61
+T + R FGFVTY++ D + + H ++G VE+KR + + A K KK+FV
Sbjct: 43 QTKRSRCFGFVTYSNVEEADAAMAASPHAVDGNTVELKRAVSREDSARPGAHAKVKKLFV 102
Query: 62 GGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDL-LAKGNK 120
GG+ V E + + F QFG V++ +I+ D + + RGFGF+ F + A D + K +
Sbjct: 103 GGLKGDVAEGDLIEHFSQFGAVEKAEIIADKQSGKKRGFGFVYFQSHDAADKAAVVKFHP 162
Query: 121 LELAGAQVEVKKAEPKK 137
++ G +VEVKKA PK+
Sbjct: 163 IQ--GHRVEVKKAVPKE 177
Score = 104 (41.7 bits), Expect = 0.00056, Sum P(2) = 0.00056
Identities = 23/76 (30%), Positives = 41/76 (53%)
Query: 58 KIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAK 117
K+F+GG+ +E + F FG + + ++ + T RSR FGF+T+ + D +A
Sbjct: 8 KLFIGGLNVQTSESGLRGHFEAFGTLTDCVVVVNPQTKRSRCFGFVTYSNVEEADAAMA- 66
Query: 118 GNKLELAGAQVEVKKA 133
+ + G VE+K+A
Sbjct: 67 ASPHAVDGNTVELKRA 82
Score = 96 (38.9 bits), Expect = 0.00087, Sum P(3) = 0.00087
Identities = 18/45 (40%), Positives = 28/45 (62%)
Query: 3 DRKTGQPRGFGFVTYADPSVVDKV-IEDTHIINGKQVEIKRTIPK 46
D+++G+ RGFGFV + DK + H I G +VE+K+ +PK
Sbjct: 132 DKQSGKKRGFGFVYFQSHDAADKAAVVKFHPIQGHRVEVKKAVPK 176
Score = 36 (17.7 bits), Expect = 2.8e-20, Sum P(2) = 2.8e-20
Identities = 6/8 (75%), Positives = 6/8 (75%)
Query: 231 GYSGRYGG 238
GY G YGG
Sbjct: 295 GYGGGYGG 302
Score = 36 (17.7 bits), Expect = 0.00087, Sum P(3) = 0.00087
Identities = 11/40 (27%), Positives = 17/40 (42%)
Query: 62 GGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFG 101
GG S ++ + F FG +HQ + +S G G
Sbjct: 240 GGGGGSYGGSDYGNGFGGFGSYSQHQ--SSYGPMKSGGGG 277
>FB|FBgn0004237 [details] [associations]
symbol:Hrb87F "Heterogeneous nuclear ribonucleoprotein at
87F" species:7227 "Drosophila melanogaster" [GO:0030529
"ribonucleoprotein complex" evidence=ISS;NAS;IDA;IPI] [GO:0005703
"polytene chromosome puff" evidence=IDA] [GO:0005654 "nucleoplasm"
evidence=IDA] [GO:0003729 "mRNA binding" evidence=ISS;NAS]
[GO:0000785 "chromatin" evidence=IDA] [GO:0005634 "nucleus"
evidence=IC;IDA] [GO:0035062 "omega speckle" evidence=IDA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0000381
"regulation of alternative mRNA splicing, via spliceosome"
evidence=IMP] [GO:0001745 "compound eye morphogenesis"
evidence=IGI] [GO:0043565 "sequence-specific DNA binding"
evidence=IDA] [GO:0007067 "mitosis" evidence=IMP] [GO:0022008
"neurogenesis" evidence=IMP] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 EMBL:AE014297
GO:GO:0005737 GO:GO:0007067 GO:GO:0022008 GO:GO:0000166
GO:GO:0043565 GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0000785
GO:GO:0030529 eggNOG:COG0724 GO:GO:0005703 GO:GO:0000381
GeneTree:ENSGT00700000104255 KO:K12741 EMBL:X54803 EMBL:X58183
EMBL:X58184 EMBL:X59691 EMBL:X62636 EMBL:BT012315 PIR:A41732
PIR:S22315 RefSeq:NP_001163602.1 RefSeq:NP_476806.1
RefSeq:NP_476807.1 UniGene:Dm.1711 ProteinModelPortal:P48810
SMR:P48810 IntAct:P48810 MINT:MINT-296059 STRING:P48810
PaxDb:P48810 EnsemblMetazoa:FBtr0082851 EnsemblMetazoa:FBtr0300590
EnsemblMetazoa:FBtr0310621 GeneID:48535 KEGG:dme:Dmel_CG12749
CTD:48535 FlyBase:FBgn0004237 InParanoid:P48810 OMA:MENRDAK
OrthoDB:EOG46WWRF PhylomeDB:P48810 ChiTaRS:Hrb87F GenomeRNAi:48535
NextBio:839451 Bgee:P48810 GermOnline:CG12749 GO:GO:0035062
Uniprot:P48810
Length = 385
Score = 223 (83.6 bits), Expect = 3.1e-20, Sum P(2) = 3.1e-20
Identities = 49/140 (35%), Positives = 77/140 (55%)
Query: 1 MKDRKTGQPRGFGFVTYADPSVVDKVIEDT-HIINGKQVEIKRTIPKGAVGSKDF--KTK 57
MKD KT + RGFGF+TY+ ++D H I+G+ VE KR +P+ + S + K
Sbjct: 56 MKDPKTKRSRGFGFITYSQSYMIDNAQNARPHKIDGRTVEPKRAVPRQEIDSPNAGATVK 115
Query: 58 KIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAK 117
K+FVGG+ +E+ +++F FG + I+ D T + RGF FI FD VD ++ +
Sbjct: 116 KLFVGGLRDDHDEECLREYFKDFGQIVSVNIVSDKDTGKKRGFAFIEFDDYDPVDKIILQ 175
Query: 118 GNKLELAGAQVEVKKAEPKK 137
+ ++VKKA K+
Sbjct: 176 KTH-SIKNKTLDVKKAIAKQ 194
Score = 144 (55.7 bits), Expect = 2.6e-11, Sum P(2) = 2.6e-11
Identities = 29/82 (35%), Positives = 51/82 (62%)
Query: 57 KKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLL- 115
+K+F+GG+ +D K F ++G++ + +M+D T RSRGFGFIT+ +D+
Sbjct: 24 RKLFIGGLDYRTTDDGLKAHFEKWGNIVDVVVMKDPKTKRSRGFGFITYSQSYMIDNAQN 83
Query: 116 AKGNKLELAGAQVEVKKAEPKK 137
A+ +K++ G VE K+A P++
Sbjct: 84 ARPHKID--GRTVEPKRAVPRQ 103
Score = 38 (18.4 bits), Expect = 3.1e-20, Sum P(2) = 3.1e-20
Identities = 7/16 (43%), Positives = 9/16 (56%)
Query: 227 PSSLGYSGRYGGFNRG 242
P+ G GGFN+G
Sbjct: 339 PAPYSQGGGGGGFNKG 354
Score = 35 (17.4 bits), Expect = 6.3e-20, Sum P(2) = 6.3e-20
Identities = 7/13 (53%), Positives = 7/13 (53%)
Query: 231 GYSGRYGGFNRGY 243
G G GG NR Y
Sbjct: 373 GQGGNMGGGNRRY 385
>UNIPROTKB|F1LNG4 [details] [associations]
symbol:Hnrnpa3 "Heterogeneous nuclear ribonucleoprotein A3"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
IPI:IPI00567786 Ensembl:ENSRNOT00000050735 ArrayExpress:F1LNG4
Uniprot:F1LNG4
Length = 357
Score = 221 (82.9 bits), Expect = 3.1e-20, Sum P(2) = 3.1e-20
Identities = 49/140 (35%), Positives = 75/140 (53%)
Query: 1 MKDRKTGQPRGFGFVTYADPSVVDKVI-EDTHIINGKQVEIKRTIPK--GAVGSKDFKTK 57
M+D +T + RGFGFVTY+ VD + H ++G+ VE KR + + K
Sbjct: 45 MRDPQTKRSRGFGFVTYSCVEEVDAAMCARPHKVDGRVVEPKRAVSREDSVKPGAHLTVK 104
Query: 58 KIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAK 117
KIFVGGI E +D+F ++G ++ ++M D + + RGF F+TFD VD ++ +
Sbjct: 105 KIFVGGIKEDTEEYNLRDYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVVQ 164
Query: 118 GNKLELAGAQVEVKKAEPKK 137
+ G EVKKA K+
Sbjct: 165 KYHT-INGHNCEVKKALSKQ 183
Score = 141 (54.7 bits), Expect = 5.1e-11, Sum P(2) = 5.1e-11
Identities = 28/85 (32%), Positives = 53/85 (62%)
Query: 57 KKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLL- 115
+K+F+GG+ +D ++ F ++G + + +MRD T RSRGFGF+T+ + VD +
Sbjct: 13 RKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDAAMC 72
Query: 116 AKGNKLELAGAQVEVKKAEPKKPNL 140
A+ +K++ G VE K+A ++ ++
Sbjct: 73 ARPHKVD--GRVVEPKRAVSREDSV 95
Score = 37 (18.1 bits), Expect = 3.1e-20, Sum P(2) = 3.1e-20
Identities = 7/11 (63%), Positives = 7/11 (63%)
Query: 234 GRYGGFNRGYD 244
G YGG GYD
Sbjct: 279 GGYGGGGGGYD 289
Score = 35 (17.4 bits), Expect = 5.0e-20, Sum P(2) = 5.0e-20
Identities = 7/17 (41%), Positives = 9/17 (52%)
Query: 231 GYSGRYGGFNRGYDVTG 247
G G Y G+N G + G
Sbjct: 283 GGGGGYDGYNEGGNFGG 299
>UNIPROTKB|E2RFV7 [details] [associations]
symbol:HNRNPA3 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
KO:K12741 GeneTree:ENSGT00700000104376 CTD:220988 OMA:QGHDPKE
EMBL:AAEX03017802 RefSeq:XP_543761.2 ProteinModelPortal:E2RFV7
Ensembl:ENSCAFT00000021410 GeneID:608074 KEGG:cfa:608074
Uniprot:E2RFV7
Length = 378
Score = 221 (82.9 bits), Expect = 3.5e-20, Sum P(2) = 3.5e-20
Identities = 49/140 (35%), Positives = 75/140 (53%)
Query: 1 MKDRKTGQPRGFGFVTYADPSVVDKVI-EDTHIINGKQVEIKRTIPK--GAVGSKDFKTK 57
M+D +T + RGFGFVTY+ VD + H ++G+ VE KR + + K
Sbjct: 67 MRDPQTKRSRGFGFVTYSCVEEVDAAMCARPHKVDGRVVEPKRAVSREDSVKPGAHLTVK 126
Query: 58 KIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAK 117
KIFVGGI E +D+F ++G ++ ++M D + + RGF F+TFD VD ++ +
Sbjct: 127 KIFVGGIKEDTEEYNLRDYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVVQ 186
Query: 118 GNKLELAGAQVEVKKAEPKK 137
+ G EVKKA K+
Sbjct: 187 KYHT-INGHNCEVKKALSKQ 205
Score = 141 (54.7 bits), Expect = 4.0e-11, Sum P(2) = 4.0e-11
Identities = 28/85 (32%), Positives = 53/85 (62%)
Query: 57 KKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLL- 115
+K+F+GG+ +D ++ F ++G + + +MRD T RSRGFGF+T+ + VD +
Sbjct: 35 RKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDAAMC 94
Query: 116 AKGNKLELAGAQVEVKKAEPKKPNL 140
A+ +K++ G VE K+A ++ ++
Sbjct: 95 ARPHKVD--GRVVEPKRAVSREDSV 117
Score = 39 (18.8 bits), Expect = 3.5e-20, Sum P(2) = 3.5e-20
Identities = 10/19 (52%), Positives = 10/19 (52%)
Query: 231 GYSGR--YGGFNRGYDVTG 247
GYS R YGG GY G
Sbjct: 281 GYSSRGGYGGGGPGYGNQG 299
Score = 38 (18.4 bits), Expect = 4.5e-20, Sum P(2) = 4.5e-20
Identities = 8/17 (47%), Positives = 10/17 (58%)
Query: 231 GYSGRYGGFNRGYDVTG 247
G G YGG + GY+ G
Sbjct: 254 GSRGSYGGGDGGYNGFG 270
Score = 37 (18.1 bits), Expect = 5.7e-20, Sum P(2) = 5.7e-20
Identities = 7/11 (63%), Positives = 7/11 (63%)
Query: 234 GRYGGFNRGYD 244
G YGG GYD
Sbjct: 300 GGYGGGGGGYD 310
Score = 35 (17.4 bits), Expect = 9.2e-20, Sum P(2) = 9.2e-20
Identities = 7/17 (41%), Positives = 9/17 (52%)
Query: 231 GYSGRYGGFNRGYDVTG 247
G G Y G+N G + G
Sbjct: 304 GGGGGYDGYNEGGNFGG 320
>UNIPROTKB|P51991 [details] [associations]
symbol:HNRNPA3 "Heterogeneous nuclear ribonucleoprotein A3"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0071013
"catalytic step 2 spliceosome" evidence=IDA] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=IC;TAS] [GO:0030529
"ribonucleoprotein complex" evidence=TAS] [GO:0005654 "nucleoplasm"
evidence=TAS] [GO:0008380 "RNA splicing" evidence=TAS] [GO:0010467
"gene expression" evidence=TAS] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005730 "nucleolus" evidence=IDA] Reactome:REACT_71
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005654 GO:GO:0005730 GO:GO:0000166
Reactome:REACT_1675 Gene3D:3.30.70.330 GO:GO:0003723 EMBL:CH471058
GO:GO:0000398 GO:GO:0071013 eggNOG:COG0724 HOVERGEN:HBG002295
EMBL:AC079305 HOGENOM:HOG000234442 KO:K12741 OrthoDB:EOG4HQDKF
HPA:HPA001666 EMBL:AY363225 EMBL:BC112027 EMBL:BC113470
IPI:IPI00419373 IPI:IPI00455134 PIR:I52962 RefSeq:NP_919223.1
UniGene:Hs.516539 ProteinModelPortal:P51991 SMR:P51991
IntAct:P51991 MINT:MINT-4999802 STRING:P51991 PhosphoSite:P51991
DMDM:51338779 PaxDb:P51991 PRIDE:P51991 Ensembl:ENST00000392524
Ensembl:ENST00000411529 Ensembl:ENST00000435711 GeneID:220988
KEGG:hsa:220988 UCSC:uc002ulb.1 CTD:220988 GeneCards:GC02P178077
HGNC:HGNC:24941 MIM:605372 neXtProt:NX_P51991 PharmGKB:PA162391169
InParanoid:P51991 OMA:QGHDPKE PhylomeDB:P51991 ChiTaRS:HNRNPA3
GenomeRNAi:220988 NextBio:91133 PMAP-CutDB:P51991
ArrayExpress:P51991 Bgee:P51991 CleanEx:HS_HNRNPA3
Genevestigator:P51991 GermOnline:ENSG00000170144 Uniprot:P51991
Length = 378
Score = 221 (82.9 bits), Expect = 3.5e-20, Sum P(2) = 3.5e-20
Identities = 49/140 (35%), Positives = 75/140 (53%)
Query: 1 MKDRKTGQPRGFGFVTYADPSVVDKVI-EDTHIINGKQVEIKRTIPK--GAVGSKDFKTK 57
M+D +T + RGFGFVTY+ VD + H ++G+ VE KR + + K
Sbjct: 67 MRDPQTKRSRGFGFVTYSCVEEVDAAMCARPHKVDGRVVEPKRAVSREDSVKPGAHLTVK 126
Query: 58 KIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAK 117
KIFVGGI E +D+F ++G ++ ++M D + + RGF F+TFD VD ++ +
Sbjct: 127 KIFVGGIKEDTEEYNLRDYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVVQ 186
Query: 118 GNKLELAGAQVEVKKAEPKK 137
+ G EVKKA K+
Sbjct: 187 KYHT-INGHNCEVKKALSKQ 205
Score = 141 (54.7 bits), Expect = 4.0e-11, Sum P(2) = 4.0e-11
Identities = 28/85 (32%), Positives = 53/85 (62%)
Query: 57 KKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLL- 115
+K+F+GG+ +D ++ F ++G + + +MRD T RSRGFGF+T+ + VD +
Sbjct: 35 RKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDAAMC 94
Query: 116 AKGNKLELAGAQVEVKKAEPKKPNL 140
A+ +K++ G VE K+A ++ ++
Sbjct: 95 ARPHKVD--GRVVEPKRAVSREDSV 117
Score = 39 (18.8 bits), Expect = 3.5e-20, Sum P(2) = 3.5e-20
Identities = 10/19 (52%), Positives = 10/19 (52%)
Query: 231 GYSGR--YGGFNRGYDVTG 247
GYS R YGG GY G
Sbjct: 282 GYSSRGGYGGGGPGYGNQG 300
Score = 38 (18.4 bits), Expect = 4.5e-20, Sum P(2) = 4.5e-20
Identities = 8/17 (47%), Positives = 10/17 (58%)
Query: 231 GYSGRYGGFNRGYDVTG 247
G G YGG + GY+ G
Sbjct: 255 GSRGSYGGGDGGYNGFG 271
Score = 35 (17.4 bits), Expect = 9.2e-20, Sum P(2) = 9.2e-20
Identities = 7/17 (41%), Positives = 9/17 (52%)
Query: 231 GYSGRYGGFNRGYDVTG 247
G G Y G+N G + G
Sbjct: 304 GGGGGYDGYNEGGNFGG 320
>GENEDB_PFALCIPARUM|PFD0700c [details] [associations]
symbol:PFD0700c "RNA binding protein, putative"
species:5833 "Plasmodium falciparum" [GO:0016070 "RNA metabolic
process" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0016070 EMBL:AL844503
HSSP:Q14103 RefSeq:XP_001351452.1 ProteinModelPortal:Q8I1U3
EnsemblProtists:PFD0700c:mRNA GeneID:812564 KEGG:pfa:PFD0700c
EuPathDB:PlasmoDB:PF3D7_0414500 HOGENOM:HOG000282694
ProtClustDB:CLSZ2431852 Uniprot:Q8I1U3
Length = 358
Score = 239 (89.2 bits), Expect = 3.5e-20, P = 3.5e-20
Identities = 56/149 (37%), Positives = 88/149 (59%)
Query: 2 KDRKTGQPRGFGFVTYADPSVVDKVIEDTHIINGKQVEIKRTIPKGAVGSKDFKTKKIFV 61
+D +T + RGF FVT A ++++ DTH +NGK+V+++ + D + +KIFV
Sbjct: 147 QDHETKRNRGFAFVTMASHINKERILRDTHELNGKRVDVRE---ENNTTPSDIQ-RKIFV 202
Query: 62 GGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKL 121
GG+ +D + +F FG++ QI+ D S+ RSR FGF+ F E +V +L K +
Sbjct: 203 GGLNYYWTKDTLESYFSTFGEIDVVQIVLD-SSGRSRCFGFVVFSNENSVAKVL-KHKRH 260
Query: 122 ELAGAQVEVKKAEPKKPNLPQPSYRRYNN 150
++ VEV+KAEPKKP + S +R NN
Sbjct: 261 KIYDKMVEVRKAEPKKPKM---SIKRSNN 286
Score = 135 (52.6 bits), Expect = 1.9e-08, P = 1.9e-08
Identities = 28/82 (34%), Positives = 45/82 (54%)
Query: 58 KIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAK 117
K F+GGIP + ++F Q+G VQ I +DH T R+RGF F+T + + +L
Sbjct: 115 KFFIGGIPQYITSKHITEYFEQYGTVQHVVIAQDHETKRNRGFAFVTMASHINKERILRD 174
Query: 118 GNKLELAGAQVEVKKAEPKKPN 139
+ EL G +V+V++ P+
Sbjct: 175 TH--ELNGKRVDVREENNTTPS 194
>UNIPROTKB|Q8I1U3 [details] [associations]
symbol:PFD0700c "RNA binding protein, putative"
species:36329 "Plasmodium falciparum 3D7" [GO:0016070 "RNA
metabolic process" evidence=ISS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0016070
EMBL:AL844503 HSSP:Q14103 RefSeq:XP_001351452.1
ProteinModelPortal:Q8I1U3 EnsemblProtists:PFD0700c:mRNA
GeneID:812564 KEGG:pfa:PFD0700c EuPathDB:PlasmoDB:PF3D7_0414500
HOGENOM:HOG000282694 ProtClustDB:CLSZ2431852 Uniprot:Q8I1U3
Length = 358
Score = 239 (89.2 bits), Expect = 3.5e-20, P = 3.5e-20
Identities = 56/149 (37%), Positives = 88/149 (59%)
Query: 2 KDRKTGQPRGFGFVTYADPSVVDKVIEDTHIINGKQVEIKRTIPKGAVGSKDFKTKKIFV 61
+D +T + RGF FVT A ++++ DTH +NGK+V+++ + D + +KIFV
Sbjct: 147 QDHETKRNRGFAFVTMASHINKERILRDTHELNGKRVDVRE---ENNTTPSDIQ-RKIFV 202
Query: 62 GGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKL 121
GG+ +D + +F FG++ QI+ D S+ RSR FGF+ F E +V +L K +
Sbjct: 203 GGLNYYWTKDTLESYFSTFGEIDVVQIVLD-SSGRSRCFGFVVFSNENSVAKVL-KHKRH 260
Query: 122 ELAGAQVEVKKAEPKKPNLPQPSYRRYNN 150
++ VEV+KAEPKKP + S +R NN
Sbjct: 261 KIYDKMVEVRKAEPKKPKM---SIKRSNN 286
Score = 135 (52.6 bits), Expect = 1.9e-08, P = 1.9e-08
Identities = 28/82 (34%), Positives = 45/82 (54%)
Query: 58 KIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAK 117
K F+GGIP + ++F Q+G VQ I +DH T R+RGF F+T + + +L
Sbjct: 115 KFFIGGIPQYITSKHITEYFEQYGTVQHVVIAQDHETKRNRGFAFVTMASHINKERILRD 174
Query: 118 GNKLELAGAQVEVKKAEPKKPN 139
+ EL G +V+V++ P+
Sbjct: 175 TH--ELNGKRVDVREENNTTPS 194
>UNIPROTKB|F2Z5B4 [details] [associations]
symbol:HNRNPA3 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0071013 "catalytic step 2 spliceosome" evidence=IEA]
[GO:0005730 "nucleolus" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0071013 KO:K12741
GeneTree:ENSGT00700000104376 OMA:QGHDPKE EMBL:CU862048
RefSeq:XP_003133549.1 ProteinModelPortal:F2Z5B4 SMR:F2Z5B4
Ensembl:ENSSSCT00000017409 GeneID:100516520 KEGG:ssc:100516520
Uniprot:F2Z5B4
Length = 379
Score = 221 (82.9 bits), Expect = 3.6e-20, Sum P(2) = 3.6e-20
Identities = 49/140 (35%), Positives = 75/140 (53%)
Query: 1 MKDRKTGQPRGFGFVTYADPSVVDKVI-EDTHIINGKQVEIKRTIPK--GAVGSKDFKTK 57
M+D +T + RGFGFVTY+ VD + H ++G+ VE KR + + K
Sbjct: 67 MRDPQTKRSRGFGFVTYSCVEEVDAAMCARPHKVDGRVVEPKRAVSREDSVKPGAHLTVK 126
Query: 58 KIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAK 117
KIFVGGI E +D+F ++G ++ ++M D + + RGF F+TFD VD ++ +
Sbjct: 127 KIFVGGIKEDTEEYNLRDYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVVQ 186
Query: 118 GNKLELAGAQVEVKKAEPKK 137
+ G EVKKA K+
Sbjct: 187 KYHT-INGHNCEVKKALSKQ 205
Score = 141 (54.7 bits), Expect = 4.0e-11, Sum P(2) = 4.0e-11
Identities = 28/85 (32%), Positives = 53/85 (62%)
Query: 57 KKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLL- 115
+K+F+GG+ +D ++ F ++G + + +MRD T RSRGFGF+T+ + VD +
Sbjct: 35 RKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDAAMC 94
Query: 116 AKGNKLELAGAQVEVKKAEPKKPNL 140
A+ +K++ G VE K+A ++ ++
Sbjct: 95 ARPHKVD--GRVVEPKRAVSREDSV 117
Score = 39 (18.8 bits), Expect = 3.6e-20, Sum P(2) = 3.6e-20
Identities = 10/19 (52%), Positives = 10/19 (52%)
Query: 231 GYSGR--YGGFNRGYDVTG 247
GYS R YGG GY G
Sbjct: 282 GYSSRGGYGGGGPGYGNQG 300
Score = 38 (18.4 bits), Expect = 4.6e-20, Sum P(2) = 4.6e-20
Identities = 8/17 (47%), Positives = 10/17 (58%)
Query: 231 GYSGRYGGFNRGYDVTG 247
G G YGG + GY+ G
Sbjct: 255 GSRGSYGGGDGGYNGFG 271
Score = 37 (18.1 bits), Expect = 5.9e-20, Sum P(2) = 5.9e-20
Identities = 7/11 (63%), Positives = 7/11 (63%)
Query: 234 GRYGGFNRGYD 244
G YGG GYD
Sbjct: 301 GGYGGGGGGYD 311
Score = 35 (17.4 bits), Expect = 9.5e-20, Sum P(2) = 9.5e-20
Identities = 7/17 (41%), Positives = 9/17 (52%)
Query: 231 GYSGRYGGFNRGYDVTG 247
G G Y G+N G + G
Sbjct: 305 GGGGGYDGYNEGGNFGG 321
>RGD|727807 [details] [associations]
symbol:Hnrnpa3 "heterogeneous nuclear ribonucleoprotein A3"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003729 "mRNA binding" evidence=IMP] [GO:0005634
"nucleus" evidence=ISO;IDA] [GO:0005681 "spliceosomal complex"
evidence=IEA] [GO:0005730 "nucleolus" evidence=ISO] [GO:0005737
"cytoplasm" evidence=IDA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0035770
"ribonucleoprotein granule" evidence=IDA] [GO:0043005 "neuron
projection" evidence=IDA] [GO:0051028 "mRNA transport"
evidence=IMP] [GO:0051033 "RNA transmembrane transporter activity"
evidence=IMP] [GO:0071013 "catalytic step 2 spliceosome"
evidence=ISO] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 RGD:727807 GO:GO:0005634
GO:GO:0005737 GO:GO:0008380 GO:GO:0000166 GO:GO:0003729
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0043005 GO:GO:0005681
GO:GO:0051028 eggNOG:COG0724 HOVERGEN:HBG002295
HOGENOM:HOG000234442 KO:K12741 OrthoDB:EOG4HQDKF CTD:220988
EMBL:AY363226 EMBL:AY363227 EMBL:BC081878 IPI:IPI00382376
IPI:IPI00464458 RefSeq:NP_001104764.1 RefSeq:NP_001104765.1
RefSeq:NP_937765.1 UniGene:Rn.107690 UniGene:Rn.99947
ProteinModelPortal:Q6URK4 SMR:Q6URK4 STRING:Q6URK4
PhosphoSite:Q6URK4 PRIDE:Q6URK4 GeneID:362152 KEGG:rno:362152
UCSC:RGD:727807 InParanoid:Q6URK4 NextBio:678824
ArrayExpress:Q6URK4 Genevestigator:Q6URK4 GO:GO:0035770
GO:GO:0051033 Uniprot:Q6URK4
Length = 379
Score = 221 (82.9 bits), Expect = 3.6e-20, Sum P(2) = 3.6e-20
Identities = 49/140 (35%), Positives = 75/140 (53%)
Query: 1 MKDRKTGQPRGFGFVTYADPSVVDKVI-EDTHIINGKQVEIKRTIPK--GAVGSKDFKTK 57
M+D +T + RGFGFVTY+ VD + H ++G+ VE KR + + K
Sbjct: 67 MRDPQTKRSRGFGFVTYSCVEEVDAAMCARPHKVDGRVVEPKRAVSREDSVKPGAHLTVK 126
Query: 58 KIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAK 117
KIFVGGI E +D+F ++G ++ ++M D + + RGF F+TFD VD ++ +
Sbjct: 127 KIFVGGIKEDTEEYNLRDYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVVQ 186
Query: 118 GNKLELAGAQVEVKKAEPKK 137
+ G EVKKA K+
Sbjct: 187 KYHT-INGHNCEVKKALSKQ 205
Score = 141 (54.7 bits), Expect = 4.0e-11, Sum P(2) = 4.0e-11
Identities = 28/85 (32%), Positives = 53/85 (62%)
Query: 57 KKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLL- 115
+K+F+GG+ +D ++ F ++G + + +MRD T RSRGFGF+T+ + VD +
Sbjct: 35 RKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDAAMC 94
Query: 116 AKGNKLELAGAQVEVKKAEPKKPNL 140
A+ +K++ G VE K+A ++ ++
Sbjct: 95 ARPHKVD--GRVVEPKRAVSREDSV 117
Score = 39 (18.8 bits), Expect = 3.6e-20, Sum P(2) = 3.6e-20
Identities = 10/19 (52%), Positives = 10/19 (52%)
Query: 231 GYSGR--YGGFNRGYDVTG 247
GYS R YGG GY G
Sbjct: 282 GYSSRGGYGGGGPGYGNQG 300
Score = 38 (18.4 bits), Expect = 4.6e-20, Sum P(2) = 4.6e-20
Identities = 8/17 (47%), Positives = 10/17 (58%)
Query: 231 GYSGRYGGFNRGYDVTG 247
G G YGG + GY+ G
Sbjct: 255 GSRGSYGGGDGGYNGFG 271
Score = 37 (18.1 bits), Expect = 5.9e-20, Sum P(2) = 5.9e-20
Identities = 7/11 (63%), Positives = 7/11 (63%)
Query: 234 GRYGGFNRGYD 244
G YGG GYD
Sbjct: 301 GGYGGGGGGYD 311
Score = 35 (17.4 bits), Expect = 9.5e-20, Sum P(2) = 9.5e-20
Identities = 7/17 (41%), Positives = 9/17 (52%)
Query: 231 GYSGRYGGFNRGYDVTG 247
G G Y G+N G + G
Sbjct: 305 GGGGGYDGYNEGGNFGG 321
>UNIPROTKB|E1BEG2 [details] [associations]
symbol:HNRNPA3 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104376 OMA:QGHDPKE EMBL:DAAA02004160
IPI:IPI00690667 Ensembl:ENSBTAT00000028757 Uniprot:E1BEG2
Length = 380
Score = 221 (82.9 bits), Expect = 3.7e-20, Sum P(2) = 3.7e-20
Identities = 49/140 (35%), Positives = 75/140 (53%)
Query: 1 MKDRKTGQPRGFGFVTYADPSVVDKVI-EDTHIINGKQVEIKRTIPK--GAVGSKDFKTK 57
M+D +T + RGFGFVTY+ VD + H ++G+ VE KR + + K
Sbjct: 67 MRDPQTKRSRGFGFVTYSCVEEVDAAMCARPHKVDGRVVEPKRAVSREDSVKPGAHLTVK 126
Query: 58 KIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAK 117
KIFVGGI E +D+F ++G ++ ++M D + + RGF F+TFD VD ++ +
Sbjct: 127 KIFVGGIKEDTEEYNLRDYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVVQ 186
Query: 118 GNKLELAGAQVEVKKAEPKK 137
+ G EVKKA K+
Sbjct: 187 KYHT-INGHNCEVKKALSKQ 205
Score = 142 (55.0 bits), Expect = 3.2e-11, Sum P(2) = 3.2e-11
Identities = 32/104 (30%), Positives = 61/104 (58%)
Query: 41 KRTIPKGAVG---SKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRS 97
+R +GA G + + +K+F+GG+ +D ++ F ++G + + +MRD T RS
Sbjct: 16 RRRRRRGAQGHDPKEPEQLRKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRS 75
Query: 98 RGFGFITFDTEQAVDDLL-AKGNKLELAGAQVEVKKAEPKKPNL 140
RGFGF+T+ + VD + A+ +K++ G VE K+A ++ ++
Sbjct: 76 RGFGFVTYSCVEEVDAAMCARPHKVD--GRVVEPKRAVSREDSV 117
Score = 39 (18.8 bits), Expect = 3.7e-20, Sum P(2) = 3.7e-20
Identities = 9/19 (47%), Positives = 9/19 (47%)
Query: 227 PSSLG-YSGRYGGFNRGYD 244
P G G YGG GYD
Sbjct: 294 PGGYGNQGGGYGGGGGGYD 312
Score = 38 (18.4 bits), Expect = 4.7e-20, Sum P(2) = 4.7e-20
Identities = 8/17 (47%), Positives = 10/17 (58%)
Query: 231 GYSGRYGGFNRGYDVTG 247
G G YGG + GY+ G
Sbjct: 255 GSRGSYGGGDGGYNGFG 271
Score = 35 (17.4 bits), Expect = 9.7e-20, Sum P(2) = 9.7e-20
Identities = 7/17 (41%), Positives = 9/17 (52%)
Query: 231 GYSGRYGGFNRGYDVTG 247
G G Y G+N G + G
Sbjct: 306 GGGGGYDGYNEGGNFGG 322
>UNIPROTKB|Q7ZYE9 [details] [associations]
symbol:hnrnpab "Hnrpab-prov protein" species:8355 "Xenopus
laevis" [GO:0005515 "protein binding" evidence=IPI]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
HOVERGEN:HBG002295 HSSP:Q14103 KO:K13044 InterPro:IPR012956
Pfam:PF08143 CTD:3182 EMBL:BC043814 RefSeq:NP_001080489.1
UniGene:Xl.45404 ProteinModelPortal:Q7ZYE9 SMR:Q7ZYE9 IntAct:Q7ZYE9
GeneID:380181 KEGG:xla:380181 Xenbase:XB-GENE-6043063
Uniprot:Q7ZYE9
Length = 324
Score = 238 (88.8 bits), Expect = 4.4e-20, P = 4.4e-20
Identities = 51/136 (37%), Positives = 81/136 (59%)
Query: 3 DRKTGQPRGFGFVTYADPSVVDKVIEDT-HIINGKQVEIKRTIPKGAVGSKDFKTKKIFV 61
D TG+ RGFGF+ + D VDKV+E H ++G+ ++ PK A+ K KKIFV
Sbjct: 98 DPNTGRSRGFGFILFKDAESVDKVLEHKEHRLDGRLID-----PKKAMAMKKDPIKKIFV 152
Query: 62 GGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKL 121
GG+ ED+ +++F FG+++ ++ D T++ RGF FITF E V +L K
Sbjct: 153 GGLNPEAGEDQIREYFETFGEIEAIELPMDPKTNKRRGFVFITFKEEDPVKKILEKKFH- 211
Query: 122 ELAGAQVEVKKAEPKK 137
++G++ E+K A+PK+
Sbjct: 212 NVSGSKCEIKIAQPKE 227
Score = 150 (57.9 bits), Expect = 3.4e-10, P = 3.4e-10
Identities = 33/81 (40%), Positives = 51/81 (62%)
Query: 58 KIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLA- 116
K+FVGG+ ++ + KD+F +FG+V + I D +T RSRGFGFI F ++VD +L
Sbjct: 65 KMFVGGLSWDTSKKDLKDYFAKFGEVSDCTIKMDPNTGRSRGFGFILFKDAESVDKVLEH 124
Query: 117 KGNKLELAGAQVEVKKAEPKK 137
K ++L+ G ++ KKA K
Sbjct: 125 KEHRLD--GRLIDPKKAMAMK 143
>UNIPROTKB|E2R5N6 [details] [associations]
symbol:E2R5N6 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR021662
Pfam:PF11627 GeneTree:ENSGT00550000074566 EMBL:AAEX03012109
Ensembl:ENSCAFT00000010232 OMA:EMASASC Uniprot:E2R5N6
Length = 322
Score = 217 (81.4 bits), Expect = 4.5e-20, Sum P(2) = 4.5e-20
Identities = 51/140 (36%), Positives = 73/140 (52%)
Query: 1 MKDRKTGQPRGFGFVTYADPSVVDKVIEDT-HIINGKQVEIKRTIPK--GAVGSKDFKTK 57
M+D T + RGFGFVTY VD + H ++G+ VE KRT K K
Sbjct: 46 MRDPNTKRSRGFGFVTYTAVEEVDPAMHARPHKVDGRVVEPKRTSSKEDSQRPGAHLTVK 105
Query: 58 KIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAK 117
KIF GGI E +D+F Q+G ++ +IM D + + RGF F+TFD +VD ++ +
Sbjct: 106 KIFAGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQ 165
Query: 118 GNKLELAGAQVEVKKAEPKK 137
+ G EV+KA K+
Sbjct: 166 KYHT-VNGHNWEVRKALSKQ 184
Score = 130 (50.8 bits), Expect = 2.8e-08, Sum P(2) = 2.8e-08
Identities = 28/82 (34%), Positives = 48/82 (58%)
Query: 57 KKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLL- 115
+K+F+GG ++ + F Q G + + +MRD +T RSRGFGF+T+ + VD +
Sbjct: 14 QKLFIGGWSFETTDESLRSHFKQRGILTDCVVMRDPNTKRSRGFGFVTYTAVEEVDPAMH 73
Query: 116 AKGNKLELAGAQVEVKKAEPKK 137
A+ +K++ G VE K+ K+
Sbjct: 74 ARPHKVD--GRVVEPKRTSSKE 93
Score = 106 (42.4 bits), Expect = 0.00045, Sum P(2) = 0.00045
Identities = 22/52 (42%), Positives = 32/52 (61%)
Query: 1 MKDRKTGQPRGFGFVTYADPSVVDK-VIEDTHIINGKQVEIKRTIPKGAVGS 51
M DR +G+ RGF FVT+ D VDK VI+ H +NG E+++ + K + S
Sbjct: 137 MTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNWEVRKALSKQEMAS 188
Score = 35 (17.4 bits), Expect = 4.5e-20, Sum P(2) = 4.5e-20
Identities = 7/14 (50%), Positives = 8/14 (57%)
Query: 231 GYSGRYGGFNRGYD 244
G G YGG GY+
Sbjct: 232 GGGGGYGGRGDGYN 245
>UNIPROTKB|F1N235 [details] [associations]
symbol:F1N235 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104376 EMBL:DAAA02006449 IPI:IPI01002976
Ensembl:ENSBTAT00000014868 OMA:LENGTGR Uniprot:F1N235
Length = 353
Score = 218 (81.8 bits), Expect = 8.1e-20, Sum P(2) = 8.1e-20
Identities = 47/137 (34%), Positives = 79/137 (57%)
Query: 1 MKDRKTGQPRGFGFVTYADPSVVDKVIEDT-HIINGKQVEIKRTIPK---GAVGSKDFKT 56
++D + + R FGF+T++ + +D + H I+GK V KR +P+ G +G+
Sbjct: 53 IRDPASQKSRRFGFITFSSMAELDAAMAARPHFIDGKMVMPKRAVPREDHGKLGAL-ITV 111
Query: 57 KKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLA 116
KK+FVGGI + E +D+F ++G + +I+ D + + RGFGFITFD VD ++
Sbjct: 112 KKLFVGGITEDMKEHHLRDYFEKYGKINAIEIVTDGQSGKKRGFGFITFDDHDPVDKIVL 171
Query: 117 KGNKLELAGAQVEVKKA 133
+ N + G + EV+KA
Sbjct: 172 QKNHT-INGHRAEVRKA 187
Score = 114 (45.2 bits), Expect = 3.5e-05, Sum P(2) = 3.5e-05
Identities = 24/80 (30%), Positives = 46/80 (57%)
Query: 58 KIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAK 117
K+F+G + S E+ +++ Q+G + + ++RD ++ +SR FGFITF + +D +A
Sbjct: 22 KLFIGDLSSETTEESLWNYYRQWGYLTDCVLIRDPASQKSRRFGFITFSSMAELDAAMAA 81
Query: 118 GNKLELAGAQVEVKKAEPKK 137
+ G V K+A P++
Sbjct: 82 RPHF-IDGKMVMPKRAVPRE 100
Score = 36 (17.7 bits), Expect = 8.1e-20, Sum P(2) = 8.1e-20
Identities = 8/14 (57%), Positives = 9/14 (64%)
Query: 229 SLGYSGRYGGFNRG 242
S GY GR GG + G
Sbjct: 244 SHGYGGRAGGGSWG 257
>UNIPROTKB|F1N4K3 [details] [associations]
symbol:F1N4K3 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR021662
Pfam:PF11627 GeneTree:ENSGT00700000104376 EMBL:DAAA02019527
IPI:IPI00906169 Ensembl:ENSBTAT00000002951 OMA:HAINGHH
Uniprot:F1N4K3
Length = 329
Score = 213 (80.0 bits), Expect = 8.3e-20, Sum P(2) = 8.3e-20
Identities = 48/137 (35%), Positives = 78/137 (56%)
Query: 1 MKDRKTGQPRGFGFVTYADPSVVDKVIEDT-HIINGKQVEIKRTIPKGAVGSKD--FKTK 57
++D + + RG GFVT++ + VD + H I+G+ +E +R IP+ A G + + K
Sbjct: 41 LRDFASQRSRGCGFVTFSSVTEVDAAMAARPHSIDGRVLEPRRAIPREASGQRGAHWTLK 100
Query: 58 KIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDL-LA 116
K+FVGGI E +++F ++G + +I+ D + R RGFGF+TFD VD + L
Sbjct: 101 KLFVGGIKEDTEEHHLREYFEKYGKIDAIEIITDRQSGRKRGFGFVTFDDYDPVDKIVLQ 160
Query: 117 KGNKLELAGAQVEVKKA 133
K + + G EV+KA
Sbjct: 161 KYHAIN--GHHAEVRKA 175
Score = 134 (52.2 bits), Expect = 1.7e-10, Sum P(2) = 1.7e-10
Identities = 24/81 (29%), Positives = 49/81 (60%)
Query: 57 KKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLA 116
+K+F+GG+ E+ + ++ Q+G++ + ++RD ++ RSRG GF+TF + VD +A
Sbjct: 9 RKLFIGGLSFQTTEESLRKYYQQWGELTDCVVLRDFASQRSRGCGFVTFSSVTEVDAAMA 68
Query: 117 KGNKLELAGAQVEVKKAEPKK 137
+ G +E ++A P++
Sbjct: 69 -ARPHSIDGRVLEPRRAIPRE 88
Score = 106 (42.4 bits), Expect = 0.00024, Sum P(2) = 0.00024
Identities = 19/43 (44%), Positives = 30/43 (69%)
Query: 3 DRKTGQPRGFGFVTYADPSVVDKVI-EDTHIINGKQVEIKRTI 44
DR++G+ RGFGFVT+ D VDK++ + H ING E+++ +
Sbjct: 134 DRQSGRKRGFGFVTFDDYDPVDKIVLQKYHAINGHHAEVRKAL 176
Score = 38 (18.4 bits), Expect = 8.3e-20, Sum P(2) = 8.3e-20
Identities = 9/17 (52%), Positives = 9/17 (52%)
Query: 227 PSSLGYSGRYGGFNRGY 243
P G SG YGG GY
Sbjct: 314 PGGSGGSGGYGG-RSGY 329
>ZFIN|ZDB-GENE-030131-618 [details] [associations]
symbol:hnrnpa0l "heterogeneous nuclear
ribonucleoprotein A0, like" species:7955 "Danio rerio" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-030131-618
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 HOVERGEN:HBG002295
GeneTree:ENSGT00700000104255 HOGENOM:HOG000234442 EMBL:BX088707
EMBL:BC050513 IPI:IPI00489762 UniGene:Dr.75590 UniGene:Dr.79301
SMR:Q7ZU48 STRING:Q7ZU48 Ensembl:ENSDART00000052511
InParanoid:Q7ZU48 OMA:ICRRIAP Uniprot:Q7ZU48
Length = 302
Score = 235 (87.8 bits), Expect = 9.2e-20, P = 9.2e-20
Identities = 47/131 (35%), Positives = 74/131 (56%)
Query: 10 RGFGFVTYADPSVVDKVIEDT-HIINGKQVEIKRTIPKGAVGSKDF--KTKKIFVGGIPS 66
R FGFVTY+ D + HI++G V++KR + + G + K KKIFVGG+
Sbjct: 47 RCFGFVTYSSTEEADAAMSARPHIVDGNNVDLKRAVAREDAGKPEMLAKVKKIFVGGLKD 106
Query: 67 SVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGA 126
+ ++ +D+F QFG +++ Q++ D T + RGFGF+ FD + D + + G
Sbjct: 107 DIEDEHLQDYFSQFGPIEKAQVITDKDTGKKRGFGFVYFDDNDSADKAVVMKFH-SICGH 165
Query: 127 QVEVKKAEPKK 137
+VEVKKA K+
Sbjct: 166 KVEVKKALTKQ 176
>UNIPROTKB|D4A1X0 [details] [associations]
symbol:D4A1X0 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0097157
GO:GO:0048025 OrthoDB:EOG4HQDKF IPI:IPI00778370
ProteinModelPortal:D4A1X0 Ensembl:ENSRNOT00000061082 Uniprot:D4A1X0
Length = 312
Score = 205 (77.2 bits), Expect = 9.7e-20, Sum P(2) = 9.7e-20
Identities = 47/136 (34%), Positives = 74/136 (54%)
Query: 1 MKDRKTGQPRGFGFVTYADPSVVDKVIEDT-HIINGKQVEIKRTIPKGAVGSKD--FKTK 57
M+D + + RGFGFVT++ + VD + H I+G+ VE KR + + G K
Sbjct: 41 MRDPASKRSRGFGFVTFSSMAEVDVAMAARPHSIDGRVVEPKRAVAREESGKPGAHVTVK 100
Query: 58 KIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAK 117
K+FVGGI E +D+F ++G + +I+ D + + RGFGF+TFD VD ++ +
Sbjct: 101 KLFVGGIKEDTEEHHLRDYFEEYGKIDTIEIITDRQSGK-RGFGFVTFDDHDPVDKIVLQ 159
Query: 118 GNKLELAGAQVEVKKA 133
+ G EV+KA
Sbjct: 160 KYHTK-NGHNAEVRKA 174
Score = 137 (53.3 bits), Expect = 1.5e-11, Sum P(2) = 1.5e-11
Identities = 27/76 (35%), Positives = 46/76 (60%)
Query: 58 KIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAK 117
K+F+GG+ E+ ++++ Q+G + + +MRD ++ RSRGFGF+TF + VD +A
Sbjct: 10 KLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDVAMA- 68
Query: 118 GNKLELAGAQVEVKKA 133
+ G VE K+A
Sbjct: 69 ARPHSIDGRVVEPKRA 84
Score = 44 (20.5 bits), Expect = 9.7e-20, Sum P(2) = 9.7e-20
Identities = 8/17 (47%), Positives = 10/17 (58%)
Query: 231 GYSGRYGGFNRGYDVTG 247
GY + GG+ GYD G
Sbjct: 262 GYGNQGGGYGGGYDNYG 278
Score = 38 (18.4 bits), Expect = 4.1e-19, Sum P(2) = 4.1e-19
Identities = 8/15 (53%), Positives = 9/15 (60%)
Query: 227 PSSLGYSGRYGGFNR 241
P G SG YGG +R
Sbjct: 297 PGGSGGSGGYGGRSR 311
Score = 35 (17.4 bits), Expect = 8.4e-19, Sum P(2) = 8.4e-19
Identities = 7/14 (50%), Positives = 8/14 (57%)
Query: 229 SLGYSGRYGGFNRG 242
S GY G GG+ G
Sbjct: 246 SPGYGGGRGGYGGG 259
Score = 35 (17.4 bits), Expect = 8.4e-19, Sum P(2) = 8.4e-19
Identities = 9/21 (42%), Positives = 9/21 (42%)
Query: 227 PSSLGYSGRYGGFNRGYDVTG 247
P G G YGG GY G
Sbjct: 247 PGYGGGRGGYGGGGPGYGNQG 267
>ZFIN|ZDB-GENE-030912-14 [details] [associations]
symbol:hnrnpa1 "heterogeneous nuclear
ribonucleoprotein A1" species:7955 "Danio rerio" [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0030529 "ribonucleoprotein complex"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-030912-14 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0030529 eggNOG:COG0724
HSSP:P09651 HOVERGEN:HBG002295 HOGENOM:HOG000234442 KO:K12741
OrthoDB:EOG4HQDKF CTD:3178 EMBL:BC044442 IPI:IPI00500189
RefSeq:NP_956398.1 UniGene:Dr.67768 ProteinModelPortal:Q803K3
SMR:Q803K3 STRING:Q803K3 PRIDE:Q803K3 GeneID:378453 KEGG:dre:378453
InParanoid:Q803K3 NextBio:20813776 ArrayExpress:Q803K3 Bgee:Q803K3
Uniprot:Q803K3
Length = 422
Score = 239 (89.2 bits), Expect = 1.0e-19, P = 1.0e-19
Identities = 56/141 (39%), Positives = 80/141 (56%)
Query: 1 MKDRKTGQPRGFGFVTYADPSVVDKVIEDT-HIINGKQVEIKRTIPKGAVGSKDFK---T 56
MKD T + RGFGFVTY+ V+ ++ H ++G+ VE KR + + SK F
Sbjct: 65 MKDPNTKRSRGFGFVTYSSVDEVNASMDARPHKVDGRLVEPKRAVSRED-SSKPFAHTTV 123
Query: 57 KKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLA 116
KKIFVGGI E+ +D+F QFG ++ +IM DH T RGF F+TFD +VD ++
Sbjct: 124 KKIFVGGIKDDTEENHLRDYFDQFGKIEVVEIMVDHKTGNKRGFAFVTFDDHDSVDRIVI 183
Query: 117 KGNKLELAGAQVEVKKAEPKK 137
+ + G EV+KA K+
Sbjct: 184 QKYHT-VNGHNCEVRKALSKQ 203
Score = 132 (51.5 bits), Expect = 2.2e-07, P = 2.2e-07
Identities = 27/78 (34%), Positives = 49/78 (62%)
Query: 57 KKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLL- 115
+K+F+GG+ +D + F Q+G + + +M+D +T RSRGFGF+T+ + V+ +
Sbjct: 33 RKLFIGGLSFETTDDSLRAHFEQWGTLTDCVVMKDPNTKRSRGFGFVTYSSVDEVNASMD 92
Query: 116 AKGNKLELAGAQVEVKKA 133
A+ +K++ G VE K+A
Sbjct: 93 ARPHKVD--GRLVEPKRA 108
>UNIPROTKB|E1BZE6 [details] [associations]
symbol:LOC100859627 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005730
"nucleolus" evidence=IEA] [GO:0071013 "catalytic step 2
spliceosome" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005730
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0071013
GeneTree:ENSGT00700000104376 OMA:QGHDPKE EMBL:AADN02020007
EMBL:AADN02020008 EMBL:AADN02020009 EMBL:AADN02020010
EMBL:AADN02020011 EMBL:AADN02020012 EMBL:AADN02020013
IPI:IPI00812068 ProteinModelPortal:E1BZE6
Ensembl:ENSGALT00000038715 Uniprot:E1BZE6
Length = 380
Score = 218 (81.8 bits), Expect = 1.4e-19, Sum P(2) = 1.4e-19
Identities = 48/140 (34%), Positives = 75/140 (53%)
Query: 1 MKDRKTGQPRGFGFVTYADPSVVDKVIEDT-HIINGKQVEIKRTIPK--GAVGSKDFKTK 57
M+D +T + RGFGFVTY+ VD + H ++G+ VE KR + + K
Sbjct: 65 MRDPQTKRSRGFGFVTYSCVEEVDAAMSARPHKVDGRVVEPKRAVSREDSVKPGAHLTVK 124
Query: 58 KIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAK 117
KIFVGGI E +++F ++G ++ ++M D + + RGF F+TFD VD ++ +
Sbjct: 125 KIFVGGIKEDTEEYNLREYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVVQ 184
Query: 118 GNKLELAGAQVEVKKAEPKK 137
+ G EVKKA K+
Sbjct: 185 KYHT-INGHNCEVKKALSKQ 203
Score = 141 (54.7 bits), Expect = 6.5e-11, Sum P(2) = 6.5e-11
Identities = 28/85 (32%), Positives = 53/85 (62%)
Query: 57 KKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLL- 115
+K+F+GG+ +D ++ F ++G + + +MRD T RSRGFGF+T+ + VD +
Sbjct: 33 RKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDAAMS 92
Query: 116 AKGNKLELAGAQVEVKKAEPKKPNL 140
A+ +K++ G VE K+A ++ ++
Sbjct: 93 ARPHKVD--GRVVEPKRAVSREDSV 115
Score = 37 (18.1 bits), Expect = 1.4e-19, Sum P(2) = 1.4e-19
Identities = 7/11 (63%), Positives = 7/11 (63%)
Query: 234 GRYGGFNRGYD 244
G YGG GYD
Sbjct: 301 GGYGGGGGGYD 311
Score = 35 (17.4 bits), Expect = 2.2e-19, Sum P(2) = 2.2e-19
Identities = 7/17 (41%), Positives = 9/17 (52%)
Query: 231 GYSGRYGGFNRGYDVTG 247
G G Y G+N G + G
Sbjct: 305 GGGGGYDGYNEGGNFGG 321
>ZFIN|ZDB-GENE-070424-97 [details] [associations]
symbol:hnrnpd "heterogeneous nuclear
ribonucleoprotein D" species:7955 "Danio rerio" [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-070424-97 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GeneTree:ENSGT00700000104347
OMA:PNQNWNQ InterPro:IPR012956 Pfam:PF08143 EMBL:CR847788
IPI:IPI00512852 Ensembl:ENSDART00000101414
Ensembl:ENSDART00000123048 Uniprot:F1Q8A5
Length = 314
Score = 204 (76.9 bits), Expect = 1.5e-19, Sum P(2) = 1.5e-19
Identities = 49/137 (35%), Positives = 82/137 (59%)
Query: 3 DRKTGQPRGFGFVTYADPSVVDKVI-EDTHIINGKQVEIKRTIPKGAVGSKDFKTKKIFV 61
D TG+ RGFGFV + + V+KVI + H +NGK ++ K+ A+ +K+ KKIFV
Sbjct: 88 DPLTGRSRGFGFVLFKEAESVEKVITQKEHKLNGKVIDPKKA---KAMKTKE-PVKKIFV 143
Query: 62 GGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKL 121
GG+ E++ +++F +G+V+ ++ ++ T++ RGF FITF E+ V ++ K K
Sbjct: 144 GGLSPDTPEEKIREYFDAYGEVESIELPMENKTNKRRGFCFITFKEEEPVKKIMEK--KY 201
Query: 122 ELAG-AQVEVKKAEPKK 137
G ++ EVK A K+
Sbjct: 202 HNIGLSKCEVKVAMSKE 218
Score = 143 (55.4 bits), Expect = 3.2e-12, Sum P(2) = 3.2e-12
Identities = 34/108 (31%), Positives = 59/108 (54%)
Query: 34 NGKQVEIKRTIPKGAVGSKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHS 93
NG Q E + + + +D K+FVGG+ + + KD+F +FG+V + + D
Sbjct: 33 NGGQGEAEGSKIDASKNEED--EGKMFVGGLSWDTTKKDLKDYFTKFGEVVDCTLKLDPL 90
Query: 94 TSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVKKAEPKKPNLP 141
T RSRGFGF+ F ++V+ ++ + + +L G ++ KKA+ K P
Sbjct: 91 TGRSRGFGFVLFKEAESVEKVITQ-KEHKLNGKVIDPKKAKAMKTKEP 137
Score = 44 (20.5 bits), Expect = 1.5e-19, Sum P(2) = 1.5e-19
Identities = 9/18 (50%), Positives = 13/18 (72%)
Query: 231 GYSGR-YGGFNRGYDVTG 247
GY+ + YGG+ GYD +G
Sbjct: 265 GYNNQGYGGYG-GYDYSG 281
Score = 35 (17.4 bits), Expect = 1.3e-18, Sum P(2) = 1.3e-18
Identities = 7/13 (53%), Positives = 8/13 (61%)
Query: 231 GYSGRYGGFNRGY 243
G G YG N+GY
Sbjct: 259 GNYGNYGYNNQGY 271
>UNIPROTKB|Q3ZC44 [details] [associations]
symbol:HNRNPAB "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0030529
eggNOG:COG0724 HOGENOM:HOG000234441 HOVERGEN:HBG002295
GeneTree:ENSGT00700000104347 KO:K13044 InterPro:IPR012956
Pfam:PF08143 CTD:3182 OMA:FILFKDP EMBL:DAAA02020063
EMBL:DAAA02020062 EMBL:BC102923 IPI:IPI00843025
RefSeq:NP_001035612.1 UniGene:Bt.58979 SMR:Q3ZC44
Ensembl:ENSBTAT00000018114 GeneID:513410 KEGG:bta:513410
NextBio:20870841 Uniprot:Q3ZC44
Length = 285
Score = 230 (86.0 bits), Expect = 3.1e-19, P = 3.1e-19
Identities = 48/137 (35%), Positives = 85/137 (62%)
Query: 3 DRKTGQPRGFGFVTYADPSVVDKVIEDT-HIINGKQVEIKRTIPKGAVGSKDFKTKKIFV 61
D TG+ RGFGF+ + D + V+KV++ H ++G+ ++ PK A+ K KKIFV
Sbjct: 104 DPNTGRSRGFGFILFKDATSVEKVLDQKEHRLDGRVID-----PKKAMAMKKDPVKKIFV 158
Query: 62 GGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKL 121
GG+ E++ +++F +FG+++ ++ D +++ RGF FITF E+ V +L K K
Sbjct: 159 GGLNPEATEEKIREYFGEFGEIEAIELPMDPKSNKRRGFVFITFKEEEPVKKVLEK--KF 216
Query: 122 E-LAGAQVEVKKAEPKK 137
++G++ E+K A+PK+
Sbjct: 217 HTISGSKCEIKVAQPKE 233
Score = 141 (54.7 bits), Expect = 2.4e-09, P = 2.4e-09
Identities = 32/81 (39%), Positives = 50/81 (61%)
Query: 58 KIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLL-A 116
K+FVGG+ ++ + KD+F +FG+V + I D +T RSRGFGFI F +V+ +L
Sbjct: 71 KMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDATSVEKVLDQ 130
Query: 117 KGNKLELAGAQVEVKKAEPKK 137
K ++L+ G ++ KKA K
Sbjct: 131 KEHRLD--GRVIDPKKAMAMK 149
>UNIPROTKB|Q99729 [details] [associations]
symbol:HNRNPAB "Heterogeneous nuclear ribonucleoprotein
A/B" species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=IDA]
[GO:0003723 "RNA binding" evidence=TAS] [GO:0003729 "mRNA binding"
evidence=TAS] [GO:0001837 "epithelial to mesenchymal transition"
evidence=ISS] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS] [GO:0005634 "nucleus"
evidence=ISS;IDA] [GO:0005737 "cytoplasm" evidence=ISS] [GO:0045893
"positive regulation of transcription, DNA-dependent" evidence=ISS]
[GO:0043565 "sequence-specific DNA binding" evidence=ISS]
[GO:0005730 "nucleolus" evidence=IDA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005737 GO:GO:0045893 GO:GO:0000166
GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0030529 GO:GO:0001837
EMBL:CH471165 eggNOG:COG0724 HOGENOM:HOG000234441
HOVERGEN:HBG002295 KO:K13044 InterPro:IPR012956 Pfam:PF08143
EMBL:M65028 EMBL:U76713 EMBL:AK054600 EMBL:AK097657 EMBL:BC001616
EMBL:BC002625 EMBL:BC004561 EMBL:BC009359 EMBL:BC036708
IPI:IPI00106509 IPI:IPI00329355 IPI:IPI00334587 IPI:IPI00334713
PIR:S17563 RefSeq:NP_004490.2 RefSeq:NP_112556.2 UniGene:Hs.591731
UniGene:Hs.715055 PDB:3S7R PDBsum:3S7R ProteinModelPortal:Q99729
SMR:Q99729 IntAct:Q99729 MINT:MINT-4537784 STRING:Q99729
PhosphoSite:Q99729 DMDM:158523286 SWISS-2DPAGE:Q99729 PaxDb:Q99729
PRIDE:Q99729 Ensembl:ENST00000355836 Ensembl:ENST00000358344
Ensembl:ENST00000504898 Ensembl:ENST00000506259 GeneID:3182
KEGG:hsa:3182 UCSC:uc003miu.3 UCSC:uc003miv.3 CTD:3182
GeneCards:GC05P177631 HGNC:HGNC:5034 HPA:HPA046688 MIM:602688
neXtProt:NX_Q99729 PharmGKB:PA162391196 InParanoid:Q99729
OMA:FILFKDP OrthoDB:EOG42BX9K ChiTaRS:HNRNPAB
EvolutionaryTrace:Q99729 GenomeRNAi:3182 NextBio:12628
ArrayExpress:Q99729 Bgee:Q99729 CleanEx:HS_HNRNPAB
Genevestigator:Q99729 GermOnline:ENSG00000197451 Uniprot:Q99729
Length = 332
Score = 230 (86.0 bits), Expect = 3.1e-19, P = 3.1e-19
Identities = 50/138 (36%), Positives = 86/138 (62%)
Query: 3 DRKTGQPRGFGFVTYADPSVVDKVIEDT-HIINGKQVEIKRTIPKGAVGSKDFKTKKIFV 61
D TG+ RGFGF+ + D + V+KV++ H ++G+ ++ PK A+ K KKIFV
Sbjct: 103 DPNTGRSRGFGFILFKDAASVEKVLDQKEHRLDGRVID-----PKKAMAMKKDPVKKIFV 157
Query: 62 GGI-PSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNK 120
GG+ P S E++ +++F +FG+++ ++ D ++ RGF FITF E+ V +L K K
Sbjct: 158 GGLNPESPTEEKIREYFGEFGEIEAIELPMDPKLNKRRGFVFITFKEEEPVKKVLEK--K 215
Query: 121 LE-LAGAQVEVKKAEPKK 137
++G++ E+K A+PK+
Sbjct: 216 FHTVSGSKCEIKVAQPKE 233
Score = 141 (54.7 bits), Expect = 3.5e-09, P = 3.5e-09
Identities = 32/81 (39%), Positives = 50/81 (61%)
Query: 58 KIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLL-A 116
K+FVGG+ ++ + KD+F +FG+V + I D +T RSRGFGFI F +V+ +L
Sbjct: 70 KMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLDQ 129
Query: 117 KGNKLELAGAQVEVKKAEPKK 137
K ++L+ G ++ KKA K
Sbjct: 130 KEHRLD--GRVIDPKKAMAMK 148
>MGI|MGI:1355299 [details] [associations]
symbol:Hnrpdl "heterogeneous nuclear ribonucleoprotein
D-like" species:10090 "Mus musculus" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=ISA] [GO:0003690
"double-stranded DNA binding" evidence=ISO] [GO:0003697
"single-stranded DNA binding" evidence=ISO] [GO:0003723 "RNA
binding" evidence=ISA] [GO:0005634 "nucleus" evidence=ISO;IDA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0008143 "poly(A)
RNA binding" evidence=ISO] [GO:0010468 "regulation of gene
expression" evidence=ISO] [GO:0016071 "mRNA metabolic process"
evidence=ISA] [GO:0034046 "poly(G) RNA binding" evidence=ISO]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 MGI:MGI:1355299 GO:GO:0005634 GO:GO:0005737
GO:GO:0016071 GO:GO:0006355 GO:GO:0000166 GO:GO:0003677
Gene3D:3.30.70.330 GO:GO:0006351 GO:GO:0003723 eggNOG:COG0724
HOGENOM:HOG000234441 HOVERGEN:HBG002295 HSSP:Q14103 ChiTaRS:HNRPDL
EMBL:AB017020 EMBL:AK011581 EMBL:AK172629 EMBL:BC021374
IPI:IPI00129417 UniGene:Mm.389579 ProteinModelPortal:Q9Z130
SMR:Q9Z130 IntAct:Q9Z130 STRING:Q9Z130 PhosphoSite:Q9Z130
PaxDb:Q9Z130 PRIDE:Q9Z130 InParanoid:Q9Z130 Bgee:Q9Z130
CleanEx:MM_HNRPDL Genevestigator:Q9Z130 Uniprot:Q9Z130
Length = 301
Score = 230 (86.0 bits), Expect = 3.1e-19, P = 3.1e-19
Identities = 50/136 (36%), Positives = 81/136 (59%)
Query: 3 DRKTGQPRGFGFVTYADPSVVDKVIE-DTHIINGKQVEIKRTIPKGAVGSKDFKTKKIFV 61
D TG+ RGFGFV + D + VDKV+E H ++GK ++ KR K G + KK+FV
Sbjct: 63 DPVTGRSRGFGFVLFKDAASVDKVLELKEHKLDGKLIDPKRA--KALKGKEP--PKKVFV 118
Query: 62 GGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKL 121
GG+ +E++ K++F FG+++ ++ D T+ RGF FIT+ E+ V LL +
Sbjct: 119 GGLSPDTSEEQIKEYFGAFGEIENIELPMDTKTNERRGFCFITYTDEEPVKKLL-ESRYH 177
Query: 122 ELAGAQVEVKKAEPKK 137
++ + E+K A+PK+
Sbjct: 178 QIGSGKCEIKVAQPKE 193
Score = 128 (50.1 bits), Expect = 6.9e-07, P = 6.9e-07
Identities = 29/85 (34%), Positives = 49/85 (57%)
Query: 58 KIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLA- 116
K+F+GG+ ++ + ++ +FG+V + I D T RSRGFGF+ F +VD +L
Sbjct: 30 KMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAASVDKVLEL 89
Query: 117 KGNKLELAGAQVEVKKAEPKKPNLP 141
K +KL+ G ++ K+A+ K P
Sbjct: 90 KEHKLD--GKLIDPKRAKALKGKEP 112
>RGD|1309950 [details] [associations]
symbol:Hnrpdl "heterogeneous nuclear ribonucleoprotein D-like"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:1309950 GO:GO:0005634 GO:GO:0005737 GO:GO:0006355 GO:GO:0000166
GO:GO:0003677 Gene3D:3.30.70.330 GO:GO:0006351 GO:GO:0003723
eggNOG:COG0724 HOVERGEN:HBG002295 HSSP:Q14103 CTD:9987 KO:K13044
EMBL:BC104683 IPI:IPI00363719 RefSeq:NP_001028868.1
UniGene:Rn.102146 ProteinModelPortal:Q3SWU3 SMR:Q3SWU3
PhosphoSite:Q3SWU3 PRIDE:Q3SWU3 GeneID:305178 KEGG:rno:305178
NextBio:654187 Genevestigator:Q3SWU3 Uniprot:Q3SWU3
Length = 322
Score = 230 (86.0 bits), Expect = 3.1e-19, P = 3.1e-19
Identities = 50/136 (36%), Positives = 81/136 (59%)
Query: 3 DRKTGQPRGFGFVTYADPSVVDKVIE-DTHIINGKQVEIKRTIPKGAVGSKDFKTKKIFV 61
D TG+ RGFGFV + D + VDKV+E H ++GK ++ KR K G + KK+FV
Sbjct: 85 DPVTGRSRGFGFVLFKDAASVDKVLELKEHKLDGKLIDPKRA--KALKGKEP--PKKVFV 140
Query: 62 GGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKL 121
GG+ +E++ K++F FG+++ ++ D T+ RGF FIT+ E+ V LL +
Sbjct: 141 GGLSPDTSEEQIKEYFGAFGEIENIELPMDTKTNERRGFCFITYTDEEPVKKLL-ESRYH 199
Query: 122 ELAGAQVEVKKAEPKK 137
++ + E+K A+PK+
Sbjct: 200 QIGSGKCEIKVAQPKE 215
Score = 128 (50.1 bits), Expect = 8.0e-07, P = 8.0e-07
Identities = 29/85 (34%), Positives = 49/85 (57%)
Query: 58 KIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLA- 116
K+F+GG+ ++ + ++ +FG+V + I D T RSRGFGF+ F +VD +L
Sbjct: 52 KMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAASVDKVLEL 111
Query: 117 KGNKLELAGAQVEVKKAEPKKPNLP 141
K +KL+ G ++ K+A+ K P
Sbjct: 112 KEHKLD--GKLIDPKRAKALKGKEP 134
>UNIPROTKB|Q3SWU3 [details] [associations]
symbol:Hnrpdl "Heterogeneous nuclear ribonucleoprotein
D-like" species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 RGD:1309950
GO:GO:0005634 GO:GO:0005737 GO:GO:0006355 GO:GO:0000166
GO:GO:0003677 Gene3D:3.30.70.330 GO:GO:0006351 GO:GO:0003723
eggNOG:COG0724 HOVERGEN:HBG002295 HSSP:Q14103 CTD:9987 KO:K13044
EMBL:BC104683 IPI:IPI00363719 RefSeq:NP_001028868.1
UniGene:Rn.102146 ProteinModelPortal:Q3SWU3 SMR:Q3SWU3
PhosphoSite:Q3SWU3 PRIDE:Q3SWU3 GeneID:305178 KEGG:rno:305178
NextBio:654187 Genevestigator:Q3SWU3 Uniprot:Q3SWU3
Length = 322
Score = 230 (86.0 bits), Expect = 3.1e-19, P = 3.1e-19
Identities = 50/136 (36%), Positives = 81/136 (59%)
Query: 3 DRKTGQPRGFGFVTYADPSVVDKVIE-DTHIINGKQVEIKRTIPKGAVGSKDFKTKKIFV 61
D TG+ RGFGFV + D + VDKV+E H ++GK ++ KR K G + KK+FV
Sbjct: 85 DPVTGRSRGFGFVLFKDAASVDKVLELKEHKLDGKLIDPKRA--KALKGKEP--PKKVFV 140
Query: 62 GGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKL 121
GG+ +E++ K++F FG+++ ++ D T+ RGF FIT+ E+ V LL +
Sbjct: 141 GGLSPDTSEEQIKEYFGAFGEIENIELPMDTKTNERRGFCFITYTDEEPVKKLL-ESRYH 199
Query: 122 ELAGAQVEVKKAEPKK 137
++ + E+K A+PK+
Sbjct: 200 QIGSGKCEIKVAQPKE 215
Score = 128 (50.1 bits), Expect = 8.0e-07, P = 8.0e-07
Identities = 29/85 (34%), Positives = 49/85 (57%)
Query: 58 KIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLA- 116
K+F+GG+ ++ + ++ +FG+V + I D T RSRGFGF+ F +VD +L
Sbjct: 52 KMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAASVDKVLEL 111
Query: 117 KGNKLELAGAQVEVKKAEPKKPNLP 141
K +KL+ G ++ K+A+ K P
Sbjct: 112 KEHKLD--GKLIDPKRAKALKGKEP 134
>MGI|MGI:1330294 [details] [associations]
symbol:Hnrnpab "heterogeneous nuclear ribonucleoprotein A/B"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0001837 "epithelial to mesenchymal transition"
evidence=IDA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=ISO] [GO:0003688 "DNA
replication origin binding" evidence=ISO] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=IDA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005515
"protein binding" evidence=IPI] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005737 "cytoplasm" evidence=IDA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=ISO] [GO:0043565
"sequence-specific DNA binding" evidence=IDA] [GO:0045892 "negative
regulation of transcription, DNA-dependent" evidence=ISO]
[GO:0045893 "positive regulation of transcription, DNA-dependent"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 MGI:MGI:1330294 GO:GO:0005634
GO:GO:0005737 GO:GO:0045893 GO:GO:0000166 GO:GO:0003677
Gene3D:3.30.70.330 GO:GO:0006351 GO:GO:0003723 GO:GO:0030529
GO:GO:0001837 UniGene:Mm.490267 eggNOG:COG0724 HOGENOM:HOG000234441
HOVERGEN:HBG002295 GeneTree:ENSGT00700000104347 KO:K13044
InterPro:IPR012956 Pfam:PF08143 CTD:3182 OrthoDB:EOG42BX9K
ChiTaRS:HNRNPAB EMBL:D90151 EMBL:L36663 EMBL:AK076132
IPI:IPI00117288 PIR:JQ0448 RefSeq:NP_034578.1 UniGene:Mm.280842
ProteinModelPortal:Q99020 SMR:Q99020 DIP:DIP-31415N IntAct:Q99020
MINT:MINT-4132837 STRING:Q99020 PhosphoSite:Q99020 PaxDb:Q99020
PRIDE:Q99020 Ensembl:ENSMUST00000074669 GeneID:15384 KEGG:mmu:15384
NextBio:288056 Bgee:Q99020 Genevestigator:Q99020
GermOnline:ENSMUSG00000020358 Uniprot:Q99020
Length = 285
Score = 229 (85.7 bits), Expect = 4.0e-19, P = 4.0e-19
Identities = 50/137 (36%), Positives = 83/137 (60%)
Query: 3 DRKTGQPRGFGFVTYADPSVVDKVIEDT-HIINGKQVEIKRTIPKGAVGSKDFKTKKIFV 61
D TG+ RGFGF+ + D S V+KV++ H ++G+ ++ PK A+ K KKIFV
Sbjct: 109 DPNTGRSRGFGFILFKDSSSVEKVLDQKEHRLDGRVID-----PKKAMAMKKDPVKKIFV 163
Query: 62 GGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKL 121
GG+ E++ +++F QFG+++ ++ D ++ RGF FITF E V +L K K
Sbjct: 164 GGLNPEATEEKIREYFGQFGEIEAIELPIDPKLNKRRGFVFITFKEEDPVKKVLEK--KF 221
Query: 122 E-LAGAQVEVKKAEPKK 137
++G++ E+K A+PK+
Sbjct: 222 HTVSGSKCEIKVAQPKE 238
Score = 143 (55.4 bits), Expect = 1.4e-09, P = 1.4e-09
Identities = 32/81 (39%), Positives = 50/81 (61%)
Query: 58 KIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLL-A 116
K+FVGG+ ++ + KD+F +FG+V + I D +T RSRGFGFI F +V+ +L
Sbjct: 76 KMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDSSSVEKVLDQ 135
Query: 117 KGNKLELAGAQVEVKKAEPKK 137
K ++L+ G ++ KKA K
Sbjct: 136 KEHRLD--GRVIDPKKAMAMK 154
>RGD|69255 [details] [associations]
symbol:Hnrnpab "heterogeneous nuclear ribonucleoprotein A/B"
species:10116 "Rattus norvegicus" [GO:0001837 "epithelial to
mesenchymal transition" evidence=ISO] [GO:0003677 "DNA binding"
evidence=IDA] [GO:0003688 "DNA replication origin binding"
evidence=IDA] [GO:0005634 "nucleus" evidence=ISO] [GO:0005737
"cytoplasm" evidence=ISO] [GO:0030529 "ribonucleoprotein complex"
evidence=ISO] [GO:0045892 "negative regulation of transcription,
DNA-dependent" evidence=IDA] [GO:0045893 "positive regulation of
transcription, DNA-dependent" evidence=ISO] [GO:0005730 "nucleolus"
evidence=ISO] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISO] [GO:0043565
"sequence-specific DNA binding" evidence=ISO] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:69255 GO:GO:0045892 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003688 HOVERGEN:HBG002295 HSSP:Q14103 InterPro:IPR012956
Pfam:PF08143 PIR:PC4375 PIR:PC4376 PIR:PC4377 UniGene:Rn.1427
UniGene:Rn.217734 EMBL:AF108653 IPI:IPI00208193
ProteinModelPortal:Q9Z0U8 SMR:Q9Z0U8 IntAct:Q9Z0U8 MINT:MINT-7138483
STRING:Q9Z0U8 PRIDE:Q9Z0U8 UCSC:RGD:69255 Genevestigator:Q9Z0U8
Uniprot:Q9Z0U8
Length = 298
Score = 229 (85.7 bits), Expect = 4.0e-19, P = 4.0e-19
Identities = 50/137 (36%), Positives = 83/137 (60%)
Query: 3 DRKTGQPRGFGFVTYADPSVVDKVIEDT-HIINGKQVEIKRTIPKGAVGSKDFKTKKIFV 61
D TG+ RGFGF+ + D S V+KV++ H ++G+ ++ PK A+ K KKIFV
Sbjct: 122 DPNTGRSRGFGFILFKDSSSVEKVLDQKEHRLDGRVID-----PKKAMAMKKDPVKKIFV 176
Query: 62 GGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKL 121
GG+ E++ +++F QFG+++ ++ D ++ RGF FITF E V +L K K
Sbjct: 177 GGLNPEATEEKIREYFGQFGEIEAIELPIDPKLNKRRGFVFITFKEEDPVKKVLEK--KF 234
Query: 122 E-LAGAQVEVKKAEPKK 137
++G++ E+K A+PK+
Sbjct: 235 HTVSGSKCEIKVAQPKE 251
Score = 143 (55.4 bits), Expect = 1.6e-09, P = 1.6e-09
Identities = 32/81 (39%), Positives = 50/81 (61%)
Query: 58 KIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLL-A 116
K+FVGG+ ++ + KD+F +FG+V + I D +T RSRGFGFI F +V+ +L
Sbjct: 89 KMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDSSSVEKVLDQ 148
Query: 117 KGNKLELAGAQVEVKKAEPKK 137
K ++L+ G ++ KKA K
Sbjct: 149 KEHRLD--GRVIDPKKAMAMK 167
>UNIPROTKB|E9PTS0 [details] [associations]
symbol:Hnrnpab "Protein Hnrnpab" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:69255 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
InterPro:IPR012956 Pfam:PF08143 EMBL:AC105470 IPI:IPI00951862
Ensembl:ENSRNOT00000065584 ArrayExpress:E9PTS0 Uniprot:E9PTS0
Length = 331
Score = 229 (85.7 bits), Expect = 4.0e-19, P = 4.0e-19
Identities = 50/137 (36%), Positives = 83/137 (60%)
Query: 3 DRKTGQPRGFGFVTYADPSVVDKVIEDT-HIINGKQVEIKRTIPKGAVGSKDFKTKKIFV 61
D TG+ RGFGF+ + D S V+KV++ H ++G+ ++ PK A+ K KKIFV
Sbjct: 108 DPNTGRSRGFGFILFKDSSSVEKVLDQKEHRLDGRVID-----PKKAMAMKKDPVKKIFV 162
Query: 62 GGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKL 121
GG+ E++ +++F QFG+++ ++ D ++ RGF FITF E V +L K K
Sbjct: 163 GGLNPEATEEKIREYFGQFGEIEAIELPIDPKLNKRRGFVFITFKEEDPVKKVLEK--KF 220
Query: 122 E-LAGAQVEVKKAEPKK 137
++G++ E+K A+PK+
Sbjct: 221 HTVSGSKCEIKVAQPKE 237
Score = 143 (55.4 bits), Expect = 2.1e-09, P = 2.1e-09
Identities = 32/81 (39%), Positives = 50/81 (61%)
Query: 58 KIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLL-A 116
K+FVGG+ ++ + KD+F +FG+V + I D +T RSRGFGFI F +V+ +L
Sbjct: 75 KMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDSSSVEKVLDQ 134
Query: 117 KGNKLELAGAQVEVKKAEPKK 137
K ++L+ G ++ KKA K
Sbjct: 135 KEHRLD--GRVIDPKKAMAMK 153
>UNIPROTKB|Q9QX80 [details] [associations]
symbol:Hnrnpab "Hnrpab protein" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:69255 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0030529 EMBL:CH473948 HOGENOM:HOG000234441 HOVERGEN:HBG002295
HSSP:Q14103 GeneTree:ENSGT00700000104347 KO:K13044
InterPro:IPR012956 Pfam:PF08143 CTD:3182 EMBL:AC105470
EMBL:AF216753 EMBL:BC066664 EMBL:AJ238855 IPI:IPI00212723
PIR:PC4375 PIR:PC4376 PIR:PC4377 RefSeq:NP_112620.2
RefSeq:XP_003750864.1 UniGene:Rn.1427 UniGene:Rn.217734 SMR:Q9QX80
STRING:Q9QX80 Ensembl:ENSRNOT00000033056 GeneID:100910156
GeneID:83498 KEGG:rno:100910156 KEGG:rno:83498 NextBio:615904
Genevestigator:Q9QX80 Uniprot:Q9QX80
Length = 285
Score = 229 (85.7 bits), Expect = 4.0e-19, P = 4.0e-19
Identities = 50/137 (36%), Positives = 83/137 (60%)
Query: 3 DRKTGQPRGFGFVTYADPSVVDKVIEDT-HIINGKQVEIKRTIPKGAVGSKDFKTKKIFV 61
D TG+ RGFGF+ + D S V+KV++ H ++G+ ++ PK A+ K KKIFV
Sbjct: 109 DPNTGRSRGFGFILFKDSSSVEKVLDQKEHRLDGRVID-----PKKAMAMKKDPVKKIFV 163
Query: 62 GGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKL 121
GG+ E++ +++F QFG+++ ++ D ++ RGF FITF E V +L K K
Sbjct: 164 GGLNPEATEEKIREYFGQFGEIEAIELPIDPKLNKRRGFVFITFKEEDPVKKVLEK--KF 221
Query: 122 E-LAGAQVEVKKAEPKK 137
++G++ E+K A+PK+
Sbjct: 222 HTVSGSKCEIKVAQPKE 238
Score = 143 (55.4 bits), Expect = 1.4e-09, P = 1.4e-09
Identities = 32/81 (39%), Positives = 50/81 (61%)
Query: 58 KIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLL-A 116
K+FVGG+ ++ + KD+F +FG+V + I D +T RSRGFGFI F +V+ +L
Sbjct: 76 KMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDSSSVEKVLDQ 135
Query: 117 KGNKLELAGAQVEVKKAEPKK 137
K ++L+ G ++ KKA K
Sbjct: 136 KEHRLD--GRVIDPKKAMAMK 154
>UNIPROTKB|Q9QX81 [details] [associations]
symbol:Hnrnpab "RCG34663, isoform CRA_a" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0001837 "epithelial to mesenchymal transition" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISS] [GO:0005737 "cytoplasm"
evidence=ISS] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
[GO:0045893 "positive regulation of transcription, DNA-dependent"
evidence=ISS] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS] [GO:0043565
"sequence-specific DNA binding" evidence=ISS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:69255 GO:GO:0005634 GO:GO:0005737 GO:GO:0045893 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0030529 GO:GO:0001837
EMBL:CH473948 HOGENOM:HOG000234441 HOVERGEN:HBG002295 HSSP:Q14103
GeneTree:ENSGT00700000104347 KO:K13044 InterPro:IPR012956
Pfam:PF08143 OMA:FILFKDP OrthoDB:EOG42BX9K EMBL:AC105470 PIR:PC4375
PIR:PC4376 PIR:PC4377 UniGene:Rn.1427 UniGene:Rn.217734
GeneID:100910156 KEGG:rno:100910156 EMBL:AJ238854 IPI:IPI00212724
RefSeq:XP_003750865.1 SMR:Q9QX81 STRING:Q9QX81
Ensembl:ENSRNOT00000004885 InParanoid:Q9QX81 Genevestigator:Q9QX81
Uniprot:Q9QX81
Length = 332
Score = 229 (85.7 bits), Expect = 4.0e-19, P = 4.0e-19
Identities = 50/137 (36%), Positives = 83/137 (60%)
Query: 3 DRKTGQPRGFGFVTYADPSVVDKVIEDT-HIINGKQVEIKRTIPKGAVGSKDFKTKKIFV 61
D TG+ RGFGF+ + D S V+KV++ H ++G+ ++ PK A+ K KKIFV
Sbjct: 109 DPNTGRSRGFGFILFKDSSSVEKVLDQKEHRLDGRVID-----PKKAMAMKKDPVKKIFV 163
Query: 62 GGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKL 121
GG+ E++ +++F QFG+++ ++ D ++ RGF FITF E V +L K K
Sbjct: 164 GGLNPEATEEKIREYFGQFGEIEAIELPIDPKLNKRRGFVFITFKEEDPVKKVLEK--KF 221
Query: 122 E-LAGAQVEVKKAEPKK 137
++G++ E+K A+PK+
Sbjct: 222 HTVSGSKCEIKVAQPKE 238
Score = 143 (55.4 bits), Expect = 2.1e-09, P = 2.1e-09
Identities = 32/81 (39%), Positives = 50/81 (61%)
Query: 58 KIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLL-A 116
K+FVGG+ ++ + KD+F +FG+V + I D +T RSRGFGFI F +V+ +L
Sbjct: 76 KMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDSSSVEKVLDQ 135
Query: 117 KGNKLELAGAQVEVKKAEPKK 137
K ++L+ G ++ KKA K
Sbjct: 136 KEHRLD--GRVIDPKKAMAMK 154
>UNIPROTKB|D6R9P3 [details] [associations]
symbol:HNRNPAB "Heterogeneous nuclear ribonucleoprotein
A/B" species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 HOGENOM:HOG000234441
InterPro:IPR012956 Pfam:PF08143 EMBL:AC136632 HGNC:HGNC:5034
ChiTaRS:HNRNPAB IPI:IPI00964686 ProteinModelPortal:D6R9P3
SMR:D6R9P3 Ensembl:ENST00000515193 ArrayExpress:D6R9P3 Bgee:D6R9P3
Uniprot:D6R9P3
Length = 280
Score = 227 (85.0 bits), Expect = 6.5e-19, P = 6.5e-19
Identities = 48/137 (35%), Positives = 84/137 (61%)
Query: 3 DRKTGQPRGFGFVTYADPSVVDKVIEDT-HIINGKQVEIKRTIPKGAVGSKDFKTKKIFV 61
D TG+ RGFGF+ + D + V+KV++ H ++G+ ++ PK A+ K KKIFV
Sbjct: 104 DPNTGRSRGFGFILFKDAASVEKVLDQKEHRLDGRVID-----PKKAMAMKKDPVKKIFV 158
Query: 62 GGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKL 121
GG+ E++ +++F +FG+++ ++ D ++ RGF FITF E+ V +L K K
Sbjct: 159 GGLNPEATEEKIREYFGEFGEIEAIELPMDPKLNKRRGFVFITFKEEEPVKKVLEK--KF 216
Query: 122 E-LAGAQVEVKKAEPKK 137
++G++ E+K A+PK+
Sbjct: 217 HTVSGSKCEIKVAQPKE 233
Score = 141 (54.7 bits), Expect = 2.2e-09, P = 2.2e-09
Identities = 32/81 (39%), Positives = 50/81 (61%)
Query: 58 KIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLL-A 116
K+FVGG+ ++ + KD+F +FG+V + I D +T RSRGFGFI F +V+ +L
Sbjct: 71 KMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLDQ 130
Query: 117 KGNKLELAGAQVEVKKAEPKK 137
K ++L+ G ++ KKA K
Sbjct: 131 KEHRLD--GRVIDPKKAMAMK 149
>UNIPROTKB|D6RBZ0 [details] [associations]
symbol:HNRNPAB "Heterogeneous nuclear ribonucleoprotein
A/B" species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 HOGENOM:HOG000234441
InterPro:IPR012956 Pfam:PF08143 EMBL:AC136632 HGNC:HGNC:5034
ChiTaRS:HNRNPAB IPI:IPI00964992 ProteinModelPortal:D6RBZ0
SMR:D6RBZ0 Ensembl:ENST00000506339 ArrayExpress:D6RBZ0 Bgee:D6RBZ0
Uniprot:D6RBZ0
Length = 327
Score = 227 (85.0 bits), Expect = 6.5e-19, P = 6.5e-19
Identities = 48/137 (35%), Positives = 84/137 (61%)
Query: 3 DRKTGQPRGFGFVTYADPSVVDKVIEDT-HIINGKQVEIKRTIPKGAVGSKDFKTKKIFV 61
D TG+ RGFGF+ + D + V+KV++ H ++G+ ++ PK A+ K KKIFV
Sbjct: 104 DPNTGRSRGFGFILFKDAASVEKVLDQKEHRLDGRVID-----PKKAMAMKKDPVKKIFV 158
Query: 62 GGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKL 121
GG+ E++ +++F +FG+++ ++ D ++ RGF FITF E+ V +L K K
Sbjct: 159 GGLNPEATEEKIREYFGEFGEIEAIELPMDPKLNKRRGFVFITFKEEEPVKKVLEK--KF 216
Query: 122 E-LAGAQVEVKKAEPKK 137
++G++ E+K A+PK+
Sbjct: 217 HTVSGSKCEIKVAQPKE 233
Score = 141 (54.7 bits), Expect = 3.4e-09, P = 3.4e-09
Identities = 32/81 (39%), Positives = 50/81 (61%)
Query: 58 KIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLL-A 116
K+FVGG+ ++ + KD+F +FG+V + I D +T RSRGFGFI F +V+ +L
Sbjct: 71 KMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLDQ 130
Query: 117 KGNKLELAGAQVEVKKAEPKK 137
K ++L+ G ++ KKA K
Sbjct: 131 KEHRLD--GRVIDPKKAMAMK 149
>UNIPROTKB|D6RD18 [details] [associations]
symbol:HNRNPAB "Heterogeneous nuclear ribonucleoprotein
A/B" species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 HOGENOM:HOG000234441
InterPro:IPR012956 Pfam:PF08143 EMBL:AC136632 HGNC:HGNC:5034
ChiTaRS:HNRNPAB IPI:IPI00966854 ProteinModelPortal:D6RD18
SMR:D6RD18 Ensembl:ENST00000514633 ArrayExpress:D6RD18 Bgee:D6RD18
Uniprot:D6RD18
Length = 283
Score = 227 (85.0 bits), Expect = 6.5e-19, P = 6.5e-19
Identities = 48/137 (35%), Positives = 84/137 (61%)
Query: 3 DRKTGQPRGFGFVTYADPSVVDKVIEDT-HIINGKQVEIKRTIPKGAVGSKDFKTKKIFV 61
D TG+ RGFGF+ + D + V+KV++ H ++G+ ++ PK A+ K KKIFV
Sbjct: 104 DPNTGRSRGFGFILFKDAASVEKVLDQKEHRLDGRVID-----PKKAMAMKKDPVKKIFV 158
Query: 62 GGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKL 121
GG+ E++ +++F +FG+++ ++ D ++ RGF FITF E+ V +L K K
Sbjct: 159 GGLNPEATEEKIREYFGEFGEIEAIELPMDPKLNKRRGFVFITFKEEEPVKKVLEK--KF 216
Query: 122 E-LAGAQVEVKKAEPKK 137
++G++ E+K A+PK+
Sbjct: 217 HTVSGSKCEIKVAQPKE 233
Score = 141 (54.7 bits), Expect = 2.3e-09, P = 2.3e-09
Identities = 32/81 (39%), Positives = 50/81 (61%)
Query: 58 KIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLL-A 116
K+FVGG+ ++ + KD+F +FG+V + I D +T RSRGFGFI F +V+ +L
Sbjct: 71 KMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLDQ 130
Query: 117 KGNKLELAGAQVEVKKAEPKK 137
K ++L+ G ++ KKA K
Sbjct: 131 KEHRLD--GRVIDPKKAMAMK 149
>UNIPROTKB|Q9XSY6 [details] [associations]
symbol:Q9XSY6 "HnRNP A/B related protein" species:9685
"Felis catus" [GO:0001837 "epithelial to mesenchymal transition"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISS] [GO:0005737
"cytoplasm" evidence=ISS] [GO:0045893 "positive regulation of
transcription, DNA-dependent" evidence=ISS] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=ISS] [GO:0043565 "sequence-specific DNA binding"
evidence=ISS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0005737
GO:GO:0045893 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0001837 HOVERGEN:HBG002295 HSSP:Q14103 InterPro:IPR012956
Pfam:PF08143 EMBL:AF153444 ProteinModelPortal:Q9XSY6 Uniprot:Q9XSY6
Length = 279
Score = 227 (85.0 bits), Expect = 6.5e-19, P = 6.5e-19
Identities = 47/134 (35%), Positives = 84/134 (62%)
Query: 6 TGQPRGFGFVTYADPSVVDKVIEDT-HIINGKQVEIKRTIPKGAVGSKDFKTKKIFVGGI 64
TG+ +GFGF+ + D + V+KV++ H ++G+ ++ PK A+ K KKIFVGG+
Sbjct: 101 TGRSKGFGFILFKDAASVEKVLDQKEHRLDGRVID-----PKKAMAMKKDPVKKIFVGGL 155
Query: 65 PSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLE-L 123
E++ +++F +FG+++ ++ D T++ RGF FITF E+ V +L K K +
Sbjct: 156 NPEATEEKIREYFGEFGEIEAIELPMDPKTNKRRGFVFITFKEEEPVKKVLEK--KFHTI 213
Query: 124 AGAQVEVKKAEPKK 137
+G++ E+K A+PK+
Sbjct: 214 SGSKCEIKVAQPKE 227
Score = 129 (50.5 bits), Expect = 3.9e-07, P = 3.9e-07
Identities = 30/81 (37%), Positives = 49/81 (60%)
Query: 58 KIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLL-A 116
K+FVGG+ ++ + KD+F +FG+V + I +T RS+GFGFI F +V+ +L
Sbjct: 65 KMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMVPNTGRSKGFGFILFKDAASVEKVLDQ 124
Query: 117 KGNKLELAGAQVEVKKAEPKK 137
K ++L+ G ++ KKA K
Sbjct: 125 KEHRLD--GRVIDPKKAMAMK 143
>UNIPROTKB|F8VRQ1 [details] [associations]
symbol:HNRNPA1 "Heterogeneous nuclear ribonucleoprotein A1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0045111
"intermediate filament cytoskeleton" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005737 GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0045111 InterPro:IPR021662
Pfam:PF11627 EMBL:AC078778 HGNC:HGNC:5031 ChiTaRS:HNRNPA1
IPI:IPI01021093 ProteinModelPortal:F8VRQ1 SMR:F8VRQ1 PRIDE:F8VRQ1
Ensembl:ENST00000551133 ArrayExpress:F8VRQ1 Bgee:F8VRQ1
Uniprot:F8VRQ1
Length = 307
Score = 226 (84.6 bits), Expect = 8.3e-19, P = 8.3e-19
Identities = 53/150 (35%), Positives = 78/150 (52%)
Query: 1 MKDRKTGQPRGFGFVTYADPSVVDKVIEDT-HIINGKQVEIKRTIPK--GAVGSKDFKTK 57
M+D T + RGFGFVTYA VD + H ++G+ VE KR + + K
Sbjct: 46 MRDPNTKRSRGFGFVTYATVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTVK 105
Query: 58 KIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAK 117
KIFVGGI E +D+F Q+G ++ +IM D + + RGF F+TFD +VD ++ +
Sbjct: 106 KIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQ 165
Query: 118 GNKLELAGAQVEVKKAEPKKPNLPQPSYRR 147
+ G EV+KA K+ S +R
Sbjct: 166 KYHT-VNGHNCEVRKALSKQEMASASSSQR 194
Score = 143 (55.4 bits), Expect = 1.8e-09, P = 1.8e-09
Identities = 29/78 (37%), Positives = 50/78 (64%)
Query: 57 KKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLL- 115
+K+F+GG+ ++ + F Q+G + + +MRD +T RSRGFGF+T+ T + VD +
Sbjct: 14 RKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMN 73
Query: 116 AKGNKLELAGAQVEVKKA 133
A+ +K++ G VE K+A
Sbjct: 74 ARPHKVD--GRVVEPKRA 89
>UNIPROTKB|F8VXY0 [details] [associations]
symbol:HNRNPA1 "Heterogeneous nuclear ribonucleoprotein A1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0045111
"intermediate filament cytoskeleton" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005737 GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0045111 InterPro:IPR021662
Pfam:PF11627 EMBL:AC078778 HGNC:HGNC:5031 ChiTaRS:HNRNPA1
IPI:IPI01022801 ProteinModelPortal:F8VXY0 SMR:F8VXY0 PRIDE:F8VXY0
Ensembl:ENST00000547617 ArrayExpress:F8VXY0 Bgee:F8VXY0
Uniprot:F8VXY0
Length = 304
Score = 226 (84.6 bits), Expect = 8.3e-19, P = 8.3e-19
Identities = 53/150 (35%), Positives = 78/150 (52%)
Query: 1 MKDRKTGQPRGFGFVTYADPSVVDKVIEDT-HIINGKQVEIKRTIPK--GAVGSKDFKTK 57
M+D T + RGFGFVTYA VD + H ++G+ VE KR + + K
Sbjct: 46 MRDPNTKRSRGFGFVTYATVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTVK 105
Query: 58 KIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAK 117
KIFVGGI E +D+F Q+G ++ +IM D + + RGF F+TFD +VD ++ +
Sbjct: 106 KIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQ 165
Query: 118 GNKLELAGAQVEVKKAEPKKPNLPQPSYRR 147
+ G EV+KA K+ S +R
Sbjct: 166 KYHT-VNGHNCEVRKALSKQEMASASSSQR 194
Score = 143 (55.4 bits), Expect = 1.7e-09, P = 1.7e-09
Identities = 29/78 (37%), Positives = 50/78 (64%)
Query: 57 KKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLL- 115
+K+F+GG+ ++ + F Q+G + + +MRD +T RSRGFGF+T+ T + VD +
Sbjct: 14 RKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMN 73
Query: 116 AKGNKLELAGAQVEVKKA 133
A+ +K++ G VE K+A
Sbjct: 74 ARPHKVD--GRVVEPKRA 89
>UNIPROTKB|F8VZ49 [details] [associations]
symbol:HNRNPA1 "Heterogeneous nuclear ribonucleoprotein A1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0045111
"intermediate filament cytoskeleton" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005737 GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0045111 EMBL:AC078778
HGNC:HGNC:5031 ChiTaRS:HNRNPA1 IPI:IPI01022460
ProteinModelPortal:F8VZ49 SMR:F8VZ49 PRIDE:F8VZ49
Ensembl:ENST00000548688 ArrayExpress:F8VZ49 Bgee:F8VZ49
Uniprot:F8VZ49
Length = 231
Score = 226 (84.6 bits), Expect = 8.3e-19, P = 8.3e-19
Identities = 53/150 (35%), Positives = 78/150 (52%)
Query: 1 MKDRKTGQPRGFGFVTYADPSVVDKVIEDT-HIINGKQVEIKRTIPK--GAVGSKDFKTK 57
M+D T + RGFGFVTYA VD + H ++G+ VE KR + + K
Sbjct: 65 MRDPNTKRSRGFGFVTYATVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTVK 124
Query: 58 KIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAK 117
KIFVGGI E +D+F Q+G ++ +IM D + + RGF F+TFD +VD ++ +
Sbjct: 125 KIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQ 184
Query: 118 GNKLELAGAQVEVKKAEPKKPNLPQPSYRR 147
+ G EV+KA K+ S +R
Sbjct: 185 KYHT-VNGHNCEVRKALSKQEMASASSSQR 213
Score = 143 (55.4 bits), Expect = 5.8e-10, P = 5.8e-10
Identities = 29/78 (37%), Positives = 50/78 (64%)
Query: 57 KKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLL- 115
+K+F+GG+ ++ + F Q+G + + +MRD +T RSRGFGF+T+ T + VD +
Sbjct: 33 RKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMN 92
Query: 116 AKGNKLELAGAQVEVKKA 133
A+ +K++ G VE K+A
Sbjct: 93 ARPHKVD--GRVVEPKRA 108
>UNIPROTKB|F1NCV5 [details] [associations]
symbol:HNRPDL "Heterogeneous nuclear ribonucleoprotein
D-like" species:9031 "Gallus gallus" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 GeneTree:ENSGT00700000104347 OMA:QHPPADN
EMBL:AADN02009038 EMBL:AADN02009039 IPI:IPI00822447
Ensembl:ENSGALT00000038016 Uniprot:F1NCV5
Length = 338
Score = 226 (84.6 bits), Expect = 8.3e-19, P = 8.3e-19
Identities = 49/136 (36%), Positives = 81/136 (59%)
Query: 3 DRKTGQPRGFGFVTYADPSVVDKVIE-DTHIINGKQVEIKRTIPKGAVGSKDFKTKKIFV 61
D TG+ RGFGFV + D + V+KV+E H ++GK ++ KR K G + KK+FV
Sbjct: 100 DPVTGRSRGFGFVLFKDAASVEKVLELKEHKLDGKLIDPKRA--KALKGKEP--PKKVFV 155
Query: 62 GGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKL 121
GG+ +E++ K++F FG+++ ++ D T+ RGF FIT+ E+ V LL +
Sbjct: 156 GGLSPDTSEEQIKEYFGAFGEIENIELPMDTKTNERRGFCFITYTDEEPVKKLL-ESRYH 214
Query: 122 ELAGAQVEVKKAEPKK 137
++ + E+K A+PK+
Sbjct: 215 QIGSGKCEIKVAQPKE 230
Score = 124 (48.7 bits), Expect = 3.8e-06, P = 3.8e-06
Identities = 28/85 (32%), Positives = 49/85 (57%)
Query: 58 KIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLA- 116
K+F+GG+ ++ + ++ +FG+V + I D T RSRGFGF+ F +V+ +L
Sbjct: 67 KMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAASVEKVLEL 126
Query: 117 KGNKLELAGAQVEVKKAEPKKPNLP 141
K +KL+ G ++ K+A+ K P
Sbjct: 127 KEHKLD--GKLIDPKRAKALKGKEP 149
>UNIPROTKB|Q5ZI72 [details] [associations]
symbol:HNRPDL "Heterogeneous nuclear ribonucleoprotein
D-like" species:9031 "Gallus gallus" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0006355
GO:GO:0000166 GO:GO:0003677 Gene3D:3.30.70.330 GO:GO:0006351
GO:GO:0003723 eggNOG:COG0724 HOGENOM:HOG000234441
HOVERGEN:HBG002295 EMBL:AJ720912 IPI:IPI00591109
RefSeq:NP_001026313.1 UniGene:Gga.4605 HSSP:Q14103
ProteinModelPortal:Q5ZI72 SMR:Q5ZI72 PRIDE:Q5ZI72
Ensembl:ENSGALT00000018235 GeneID:422601 KEGG:gga:422601 CTD:9987
GeneTree:ENSGT00700000104347 KO:K13044 NextBio:20825211
Uniprot:Q5ZI72
Length = 301
Score = 226 (84.6 bits), Expect = 8.3e-19, P = 8.3e-19
Identities = 49/136 (36%), Positives = 81/136 (59%)
Query: 3 DRKTGQPRGFGFVTYADPSVVDKVIE-DTHIINGKQVEIKRTIPKGAVGSKDFKTKKIFV 61
D TG+ RGFGFV + D + V+KV+E H ++GK ++ KR K G + KK+FV
Sbjct: 64 DPVTGRSRGFGFVLFKDAASVEKVLELKEHKLDGKLIDPKRA--KALKGKEP--PKKVFV 119
Query: 62 GGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKL 121
GG+ +E++ K++F FG+++ ++ D T+ RGF FIT+ E+ V LL +
Sbjct: 120 GGLSPDTSEEQIKEYFGAFGEIENIELPMDTKTNERRGFCFITYTDEEPVKKLL-ESRYH 178
Query: 122 ELAGAQVEVKKAEPKK 137
++ + E+K A+PK+
Sbjct: 179 QIGSGKCEIKVAQPKE 194
Score = 124 (48.7 bits), Expect = 3.0e-06, P = 3.0e-06
Identities = 28/85 (32%), Positives = 49/85 (57%)
Query: 58 KIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLA- 116
K+F+GG+ ++ + ++ +FG+V + I D T RSRGFGF+ F +V+ +L
Sbjct: 31 KMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAASVEKVLEL 90
Query: 117 KGNKLELAGAQVEVKKAEPKKPNLP 141
K +KL+ G ++ K+A+ K P
Sbjct: 91 KEHKLD--GKLIDPKRAKALKGKEP 113
>UNIPROTKB|F1N2T0 [details] [associations]
symbol:HNRPDL "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GeneTree:ENSGT00700000104347
OMA:QHPPADN EMBL:DAAA02018246 IPI:IPI00697542 UniGene:Bt.23277
PRIDE:F1N2T0 Ensembl:ENSBTAT00000019699 ArrayExpress:F1N2T0
Uniprot:F1N2T0
Length = 420
Score = 230 (86.0 bits), Expect = 1.0e-18, P = 1.0e-18
Identities = 50/136 (36%), Positives = 81/136 (59%)
Query: 3 DRKTGQPRGFGFVTYADPSVVDKVIE-DTHIINGKQVEIKRTIPKGAVGSKDFKTKKIFV 61
D TG+ RGFGFV + D + VDKV+E H ++GK ++ KR K G + KK+FV
Sbjct: 182 DPVTGRSRGFGFVLFKDAASVDKVLELKEHKLDGKLIDPKRA--KALKGKEP--PKKVFV 237
Query: 62 GGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKL 121
GG+ +E++ K++F FG+++ ++ D T+ RGF FIT+ E+ V LL +
Sbjct: 238 GGLSPDTSEEQIKEYFGAFGEIENIELPMDTKTNERRGFCFITYTDEEPVKKLL-ESRYH 296
Query: 122 ELAGAQVEVKKAEPKK 137
++ + E+K A+PK+
Sbjct: 297 QIGSGKCEIKVAQPKE 312
Score = 128 (50.1 bits), Expect = 1.3e-06, P = 1.3e-06
Identities = 29/85 (34%), Positives = 49/85 (57%)
Query: 58 KIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLA- 116
K+F+GG+ ++ + ++ +FG+V + I D T RSRGFGF+ F +VD +L
Sbjct: 149 KMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAASVDKVLEL 208
Query: 117 KGNKLELAGAQVEVKKAEPKKPNLP 141
K +KL+ G ++ K+A+ K P
Sbjct: 209 KEHKLD--GKLIDPKRAKALKGKEP 231
>UNIPROTKB|E2QRT0 [details] [associations]
symbol:HNRPDL "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005634 "nucleus" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 CTD:9987
GeneTree:ENSGT00700000104347 KO:K13044 OMA:QHPPADN
EMBL:AAEX03016723 RefSeq:XP_858404.1 Ensembl:ENSCAFT00000014224
GeneID:476976 KEGG:cfa:476976 NextBio:20852539 Uniprot:E2QRT0
Length = 420
Score = 230 (86.0 bits), Expect = 1.0e-18, P = 1.0e-18
Identities = 50/136 (36%), Positives = 81/136 (59%)
Query: 3 DRKTGQPRGFGFVTYADPSVVDKVIE-DTHIINGKQVEIKRTIPKGAVGSKDFKTKKIFV 61
D TG+ RGFGFV + D + VDKV+E H ++GK ++ KR K G + KK+FV
Sbjct: 182 DPVTGRSRGFGFVLFKDAASVDKVLELKEHKLDGKLIDPKRA--KALKGKEP--PKKVFV 237
Query: 62 GGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKL 121
GG+ +E++ K++F FG+++ ++ D T+ RGF FIT+ E+ V LL +
Sbjct: 238 GGLSPDTSEEQIKEYFGAFGEIENIELPMDTKTNERRGFCFITYTDEEPVKKLL-ESRYH 296
Query: 122 ELAGAQVEVKKAEPKK 137
++ + E+K A+PK+
Sbjct: 297 QIGSGKCEIKVAQPKE 312
Score = 128 (50.1 bits), Expect = 1.3e-06, P = 1.3e-06
Identities = 29/85 (34%), Positives = 49/85 (57%)
Query: 58 KIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLA- 116
K+F+GG+ ++ + ++ +FG+V + I D T RSRGFGF+ F +VD +L
Sbjct: 149 KMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAASVDKVLEL 208
Query: 117 KGNKLELAGAQVEVKKAEPKKPNLP 141
K +KL+ G ++ K+A+ K P
Sbjct: 209 KEHKLD--GKLIDPKRAKALKGKEP 231
>UNIPROTKB|O14979 [details] [associations]
symbol:HNRPDL "Heterogeneous nuclear ribonucleoprotein
D-like" species:9606 "Homo sapiens" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA;IDA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0003690
"double-stranded DNA binding" evidence=IDA] [GO:0003697
"single-stranded DNA binding" evidence=IDA] [GO:0008143 "poly(A)
RNA binding" evidence=IDA] [GO:0034046 "poly(G) RNA binding"
evidence=IDA] [GO:0005681 "spliceosomal complex" evidence=NAS]
[GO:0006396 "RNA processing" evidence=NAS] [GO:0010468 "regulation
of gene expression" evidence=IDA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:D89678 GO:GO:0005634 GO:GO:0005737 GO:GO:0006355 GO:GO:0000166
GO:GO:0003677 Gene3D:3.30.70.330 GO:GO:0006351 GO:GO:0005681
GO:GO:0003723 GO:GO:0006396 GO:GO:0003690 GO:GO:0003697
GO:GO:0010468 GO:GO:0034046 eggNOG:COG0724 GO:GO:0008143
HOGENOM:HOG000234441 HOVERGEN:HBG002295 HSSP:Q14103 CTD:9987
KO:K13044 EMBL:AB017019 EMBL:D89092 EMBL:AB066484 EMBL:CR407623
EMBL:AC124016 EMBL:AB017018 EMBL:BC007392 EMBL:BC011714
EMBL:BC071944 EMBL:AY453824 IPI:IPI00011274 IPI:IPI00045498
IPI:IPI00845282 PIR:JW0079 RefSeq:NP_001193929.1 RefSeq:NP_112740.1
UniGene:Hs.527105 UniGene:Hs.731516 ProteinModelPortal:O14979
SMR:O14979 IntAct:O14979 STRING:O14979 PhosphoSite:O14979
PaxDb:O14979 PRIDE:O14979 DNASU:9987 Ensembl:ENST00000295470
Ensembl:ENST00000349655 Ensembl:ENST00000502762 GeneID:9987
KEGG:hsa:9987 UCSC:uc003hmr.3 GeneCards:GC04M083343 HGNC:HGNC:5037
MIM:607137 neXtProt:NX_O14979 PharmGKB:PA29362 InParanoid:O14979
OMA:QHPPADN OrthoDB:EOG49W2FZ PhylomeDB:O14979 ChiTaRS:HNRPDL
GenomeRNAi:9987 NextBio:37714 ArrayExpress:O14979 Bgee:O14979
CleanEx:HS_HNRPDL Genevestigator:O14979 Uniprot:O14979
Length = 420
Score = 230 (86.0 bits), Expect = 1.0e-18, P = 1.0e-18
Identities = 50/136 (36%), Positives = 81/136 (59%)
Query: 3 DRKTGQPRGFGFVTYADPSVVDKVIE-DTHIINGKQVEIKRTIPKGAVGSKDFKTKKIFV 61
D TG+ RGFGFV + D + VDKV+E H ++GK ++ KR K G + KK+FV
Sbjct: 182 DPVTGRSRGFGFVLFKDAASVDKVLELKEHKLDGKLIDPKRA--KALKGKEP--PKKVFV 237
Query: 62 GGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKL 121
GG+ +E++ K++F FG+++ ++ D T+ RGF FIT+ E+ V LL +
Sbjct: 238 GGLSPDTSEEQIKEYFGAFGEIENIELPMDTKTNERRGFCFITYTDEEPVKKLL-ESRYH 296
Query: 122 ELAGAQVEVKKAEPKK 137
++ + E+K A+PK+
Sbjct: 297 QIGSGKCEIKVAQPKE 312
Score = 128 (50.1 bits), Expect = 1.3e-06, P = 1.3e-06
Identities = 29/85 (34%), Positives = 49/85 (57%)
Query: 58 KIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLA- 116
K+F+GG+ ++ + ++ +FG+V + I D T RSRGFGF+ F +VD +L
Sbjct: 149 KMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAASVDKVLEL 208
Query: 117 KGNKLELAGAQVEVKKAEPKKPNLP 141
K +KL+ G ++ K+A+ K P
Sbjct: 209 KEHKLD--GKLIDPKRAKALKGKEP 231
>UNIPROTKB|F1PVY3 [details] [associations]
symbol:F1PVY3 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR021662
Pfam:PF11627 GeneTree:ENSGT00550000074566 EMBL:AAEX03016228
Ensembl:ENSCAFT00000027434 Uniprot:F1PVY3
Length = 301
Score = 225 (84.3 bits), Expect = 1.1e-18, P = 1.1e-18
Identities = 53/140 (37%), Positives = 80/140 (57%)
Query: 1 MKDRKTGQPRGFGFVTYADPSVVDKVIEDT-HIINGKQVEIKRTIPKGAVGSKD--FKTK 57
M+D T + RGFGFVTYA VD + H ++G+ VE KR + + + D K
Sbjct: 45 MRDPNTKRSRGFGFVTYATVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQTLDAHLTVK 104
Query: 58 KIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAK 117
KIFVGGI + ED +D+F ++G ++ +IM D + + RGF F+TFD +VD ++ K
Sbjct: 105 KIFVGGIKENT-EDHLRDYF-EYGKIEVIEIMTDRGSGKKRGFTFVTFDDHDSVDKIIQK 162
Query: 118 GNKLELAGAQVEVKKAEPKK 137
+ + G EV+KA K+
Sbjct: 163 YHTVN--GHNCEVRKALSKQ 180
Score = 128 (50.1 bits), Expect = 6.9e-07, P = 6.9e-07
Identities = 28/78 (35%), Positives = 49/78 (62%)
Query: 57 KKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLL- 115
+K+F+GG+ ++ + F ++G + +MRD +T RSRGFGF+T+ T + VD +
Sbjct: 14 QKLFIGGLSFETTDESLRSHF-EWGTLTGCVVMRDPNTKRSRGFGFVTYATVEEVDAAMN 72
Query: 116 AKGNKLELAGAQVEVKKA 133
A+ +K++ G VE K+A
Sbjct: 73 ARPHKVD--GRVVEPKRA 88
Score = 114 (45.2 bits), Expect = 7.5e-05, P = 7.5e-05
Identities = 21/51 (41%), Positives = 32/51 (62%)
Query: 1 MKDRKTGQPRGFGFVTYADPSVVDKVIEDTHIINGKQVEIKRTIPKGAVGS 51
M DR +G+ RGF FVT+ D VDK+I+ H +NG E+++ + K + S
Sbjct: 134 MTDRGSGKKRGFTFVTFDDHDSVDKIIQKYHTVNGHNCEVRKALSKQEMAS 184
>UNIPROTKB|D4A491 [details] [associations]
symbol:D4A491 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 OrthoDB:EOG4HQDKF
IPI:IPI00560785 ProteinModelPortal:D4A491
Ensembl:ENSRNOT00000046349 OMA:DNAMEAR Uniprot:D4A491
Length = 239
Score = 224 (83.9 bits), Expect = 1.4e-18, P = 1.4e-18
Identities = 52/136 (38%), Positives = 75/136 (55%)
Query: 1 MKDRKTGQPRGFGFVTYADPSVVDKVIEDT-HIINGKQVEIKRTIPKGAVGSKD-FKT-K 57
M+D T + RGFGFVTYA VD + H +NG+ VE KR + + D + T K
Sbjct: 39 MRDPNTKRSRGFGFVTYATVEEVDAAMNARPHKVNGRVVEPKRAVSREDSQRPDAYLTVK 98
Query: 58 KIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAK 117
KIFVGGI E +D+F Q+G + +I+ D + + RGF F+TFD +VD ++ +
Sbjct: 99 KIFVGGIKEDTEEHHLRDYFGQYGKTEVIEIVTDRGSGKKRGFAFVTFDDRDSVDKIVIQ 158
Query: 118 GNKLELAGAQVEVKKA 133
+ G EV+KA
Sbjct: 159 KYHT-VNGHNCEVRKA 173
Score = 144 (55.7 bits), Expect = 5.2e-10, P = 5.2e-10
Identities = 30/92 (32%), Positives = 55/92 (59%)
Query: 55 KTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDL 114
+ +K+F+GG+ ++ + F Q+G + + +MRD +T RSRGFGF+T+ T + VD
Sbjct: 5 QVRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAA 64
Query: 115 L-AKGNKLELAGAQVEVKKAEPKKPNLPQPSY 145
+ A+ +K+ G VE K+A ++ + +Y
Sbjct: 65 MNARPHKVN--GRVVEPKRAVSREDSQRPDAY 94
>UNIPROTKB|F1M460 [details] [associations]
symbol:F1M460 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 IPI:IPI00569538
ProteinModelPortal:F1M460 Ensembl:ENSRNOT00000043465
ArrayExpress:F1M460 Uniprot:F1M460
Length = 224
Score = 223 (83.6 bits), Expect = 1.7e-18, P = 1.7e-18
Identities = 49/140 (35%), Positives = 76/140 (54%)
Query: 1 MKDRKTGQPRGFGFVTYADPSVVDKVI-EDTHIINGKQVEIKRTIPK--GAVGSKDFKTK 57
M+D +T + RGFGFVTY+ VD + H ++G+ VE KR + + K
Sbjct: 40 MRDPQTKRSRGFGFVTYSCVEEVDAAVCARPHKVDGRVVEPKRAVSREDSVKPGAHLTVK 99
Query: 58 KIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAK 117
KIFVGGI E +D+F ++G ++ ++M D + + RGF F+TFD VD ++ +
Sbjct: 100 KIFVGGIKEDTEEYNLRDYFEKYGKIETIEVMEDSQSGKKRGFAFVTFDDHDTVDKIVDQ 159
Query: 118 GNKLELAGAQVEVKKAEPKK 137
+ + G EVKKA K+
Sbjct: 160 KYHI-INGHNCEVKKALSKQ 178
Score = 134 (52.2 bits), Expect = 5.9e-09, P = 5.9e-09
Identities = 27/85 (31%), Positives = 52/85 (61%)
Query: 57 KKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLL- 115
+K+ +GG+ +D ++ F ++G + + +MRD T RSRGFGF+T+ + VD +
Sbjct: 8 RKLLIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDAAVC 67
Query: 116 AKGNKLELAGAQVEVKKAEPKKPNL 140
A+ +K++ G VE K+A ++ ++
Sbjct: 68 ARPHKVD--GRVVEPKRAVSREDSV 90
>UNIPROTKB|F1Q2T4 [details] [associations]
symbol:F1Q2T4 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR021662
Pfam:PF11627 GeneTree:ENSGT00550000074566 EMBL:AAEX03026834
Ensembl:ENSCAFT00000030325 Uniprot:F1Q2T4
Length = 290
Score = 200 (75.5 bits), Expect = 2.7e-18, Sum P(2) = 2.7e-18
Identities = 48/139 (34%), Positives = 72/139 (51%)
Query: 1 MKDRKTGQPRGFGFVTYADPSVVDKVIEDTHIINGKQVEIKRTIPK--GAVGSKDFKTKK 58
M+D T RGFGFVTYA VD +H ++G+ VE KR + + +K
Sbjct: 46 MRDPNTKHSRGFGFVTYATVKEVDAA--RSHKVDGRVVEPKRAVSREDSQRPGAHLTVRK 103
Query: 59 IFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKG 118
IFVGGI E +D+F Q+G ++ +IM D + + RGF +TFD D ++ +
Sbjct: 104 IFVGGIKEDTEEHHLRDYFKQYGKIEVIEIMTDRGSGKKRGFASVTFDDHDK-DKIVIQK 162
Query: 119 NKLELAGAQVEVKKAEPKK 137
+ + G EV+KA K+
Sbjct: 163 YYI-VNGHNCEVRKALSKQ 180
Score = 135 (52.6 bits), Expect = 1.5e-10, Sum P(2) = 1.5e-10
Identities = 28/77 (36%), Positives = 48/77 (62%)
Query: 57 KKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLA 116
+K+F+GG+ + + F Q+G +++ +MRD +T SRGFGF+T+ T + VD A
Sbjct: 14 RKLFIGGLSFETTNESLRSHFEQWGMLRDCVVMRDPNTKHSRGFGFVTYATVKEVD--AA 71
Query: 117 KGNKLELAGAQVEVKKA 133
+ +K++ G VE K+A
Sbjct: 72 RSHKVD--GRVVEPKRA 86
Score = 35 (17.4 bits), Expect = 2.7e-18, Sum P(2) = 2.7e-18
Identities = 7/15 (46%), Positives = 9/15 (60%)
Query: 234 GRYGGFNRGYDVTGD 248
G YGG GY+ G+
Sbjct: 230 GGYGGSGDGYNGFGN 244
>UNIPROTKB|D4A6A2 [details] [associations]
symbol:D4A6A2 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 IPI:IPI00949070
ProteinModelPortal:D4A6A2 Ensembl:ENSRNOT00000035567 Uniprot:D4A6A2
Length = 232
Score = 221 (82.9 bits), Expect = 2.8e-18, P = 2.8e-18
Identities = 48/139 (34%), Positives = 74/139 (53%)
Query: 1 MKDRKTGQPRGFGFVTYADPSVVDKVIEDTHIINGKQVEIKRTIPK--GAVGSKDFKTKK 58
M+D +T + RGFGFVTY+ V + H ++G+ VE KR + + KK
Sbjct: 45 MRDPQTKRSRGFGFVTYSCEEVDAAMCARPHKVDGRVVEPKRAVSREDSVKPGAHLTVKK 104
Query: 59 IFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKG 118
IFVGGI E +D+F ++G ++ ++M D + + RGF F+TFD VD ++ +
Sbjct: 105 IFVGGIKEDTGEYNLRDYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVVQK 164
Query: 119 NKLELAGAQVEVKKAEPKK 137
+ G EVKKA K+
Sbjct: 165 YHT-INGHNCEVKKALSKQ 182
Score = 145 (56.1 bits), Expect = 3.3e-10, P = 3.3e-10
Identities = 27/84 (32%), Positives = 52/84 (61%)
Query: 57 KKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLA 116
+K+F+GG+ +D ++ F ++G + + +MRD T RSRGFGF+T+ E+ + A
Sbjct: 13 RKLFIGGLSFETTDDSLREHFQKWGTLTDCVVMRDPQTKRSRGFGFVTYSCEEVDAAMCA 72
Query: 117 KGNKLELAGAQVEVKKAEPKKPNL 140
+ +K++ G VE K+A ++ ++
Sbjct: 73 RPHKVD--GRVVEPKRAVSREDSV 94
>RGD|2321074 [details] [associations]
symbol:LOC100360986 "mCG1035404-like" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:2321074 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
OrthoDB:EOG4HQDKF InterPro:IPR021662 Pfam:PF11627 IPI:IPI00559028
PRIDE:D4ACQ0 Ensembl:ENSRNOT00000002122 UCSC:RGD:2321074
ArrayExpress:D4ACQ0 Uniprot:D4ACQ0
Length = 320
Score = 221 (82.9 bits), Expect = 2.8e-18, P = 2.8e-18
Identities = 49/140 (35%), Positives = 75/140 (53%)
Query: 1 MKDRKTGQPRGFGFVTYADPSVVDKVI-EDTHIINGKQVEIKRTIPK--GAVGSKDFKTK 57
M+D +T + RGFGFVTY+ VD + H ++G+ VE KR + + K
Sbjct: 67 MRDPQTKRSRGFGFVTYSCVEEVDAAMCARPHKVDGRVVEPKRAVSREDSVKPGAHLTVK 126
Query: 58 KIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAK 117
KIFVGGI E +D+F ++G ++ ++M D + + RGF F+TFD VD ++ +
Sbjct: 127 KIFVGGIKEDTEEYNLRDYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVVQ 186
Query: 118 GNKLELAGAQVEVKKAEPKK 137
+ G EVKKA K+
Sbjct: 187 KYHT-INGHNCEVKKALSKQ 205
Score = 141 (54.7 bits), Expect = 3.2e-09, P = 3.2e-09
Identities = 28/85 (32%), Positives = 53/85 (62%)
Query: 57 KKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLL- 115
+K+F+GG+ +D ++ F ++G + + +MRD T RSRGFGF+T+ + VD +
Sbjct: 35 RKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDAAMC 94
Query: 116 AKGNKLELAGAQVEVKKAEPKKPNL 140
A+ +K++ G VE K+A ++ ++
Sbjct: 95 ARPHKVD--GRVVEPKRAVSREDSV 117
>UNIPROTKB|F1SA35 [details] [associations]
symbol:LOC100737421 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104376 EMBL:FP326688 RefSeq:XP_003480852.1
Ensembl:ENSSSCT00000014862 GeneID:100737421 KEGG:ssc:100737421
OMA:STFGNIV Uniprot:F1SA35
Length = 349
Score = 203 (76.5 bits), Expect = 3.0e-18, Sum P(2) = 3.0e-18
Identities = 46/137 (33%), Positives = 72/137 (52%)
Query: 1 MKDRKTGQPRGFGFVTYADPSVVDKVIEDT-HIINGKQVEIKRTIPK--GAVGSKDFKTK 57
++D + RGFGFVT++ + VD + H ++GK V+ KR + + K
Sbjct: 53 LRDPSNKRSRGFGFVTFSSVAEVDAAMAARPHSVDGKVVDPKRAVAREESEKPGAHLAVK 112
Query: 58 KIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDL-LA 116
K+FVGGI E +D+F ++G + +I+ D + + RGFGF+TFD VD + L
Sbjct: 113 KLFVGGIKEDTEEHHLRDYFEKYGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKIVLQ 172
Query: 117 KGNKLELAGAQVEVKKA 133
K + + G EV KA
Sbjct: 173 KYHTIN--GHHAEVGKA 187
Score = 137 (53.3 bits), Expect = 1.0e-10, Sum P(2) = 1.0e-10
Identities = 30/85 (35%), Positives = 49/85 (57%)
Query: 58 KIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAK 117
K+F+GG+ S E ++++ Q+G + + ++RD S RSRGFGF+TF + VD +A
Sbjct: 22 KLFIGGLCSRTTEKSLRNYYQQWGKLTDCVVLRDPSNKRSRGFGFVTFSSVAEVDAAMA- 80
Query: 118 GNKLELAGAQVEVKKA----EPKKP 138
+ G V+ K+A E +KP
Sbjct: 81 ARPHSVDGKVVDPKRAVAREESEKP 105
Score = 104 (41.7 bits), Expect = 0.00055, Sum P(2) = 0.00055
Identities = 19/45 (42%), Positives = 30/45 (66%)
Query: 3 DRKTGQPRGFGFVTYADPSVVDKVI-EDTHIINGKQVEIKRTIPK 46
DR++G+ RGFGFVT+ D VDK++ + H ING E+ + + +
Sbjct: 146 DRQSGKKRGFGFVTFDDHDPVDKIVLQKYHTINGHHAEVGKALSR 190
Score = 38 (18.4 bits), Expect = 3.0e-18, Sum P(2) = 3.0e-18
Identities = 6/11 (54%), Positives = 7/11 (63%)
Query: 232 YSGRYGGFNRG 242
Y G Y G+ RG
Sbjct: 227 YKGGYNGYGRG 237
>UNIPROTKB|D4AD23 [details] [associations]
symbol:D4AD23 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 OrthoDB:EOG4HQDKF
InterPro:IPR021662 Pfam:PF11627 IPI:IPI00390944
ProteinModelPortal:D4AD23 Ensembl:ENSRNOT00000039846 Uniprot:D4AD23
Length = 313
Score = 199 (75.1 bits), Expect = 4.4e-18, Sum P(2) = 4.4e-18
Identities = 45/118 (38%), Positives = 62/118 (52%)
Query: 1 MKDRKTGQPRGFGFVTYADPSVVDKVIEDT-HIINGKQVEIKRTIPK--GAVGSKDFKTK 57
M+D T + RGFGFVTYA VD + +NG+ VE KR + + K
Sbjct: 46 MRDPNTKRSRGFGFVTYATVEEVDAAMNARPQKVNGRVVEPKRAVSREDSQRPGAHLTVK 105
Query: 58 KIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLL 115
KIFVGGI E +D+F Q+G + +IM D + RGF F+TFD +VD ++
Sbjct: 106 KIFVGGIKEDT-EHHLRDYFEQYGKTEVIEIMTDRGRGKKRGFAFVTFDDHDSVDKIV 162
Score = 134 (52.2 bits), Expect = 2.2e-10, Sum P(2) = 2.2e-10
Identities = 28/78 (35%), Positives = 47/78 (60%)
Query: 57 KKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLL- 115
+K+F+G + ++ + F Q+G + + +MRD +T RSRGFGF+T+ T + VD +
Sbjct: 14 RKLFIGALSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMN 73
Query: 116 AKGNKLELAGAQVEVKKA 133
A+ K+ G VE K+A
Sbjct: 74 ARPQKVN--GRVVEPKRA 89
Score = 36 (17.7 bits), Expect = 4.4e-18, Sum P(2) = 4.4e-18
Identities = 7/15 (46%), Positives = 8/15 (53%)
Query: 228 SSLGYSGRYGGFNRG 242
S G SG Y +N G
Sbjct: 219 SGYGGSGSYDSYNNG 233
>UNIPROTKB|F1M6U1 [details] [associations]
symbol:F1M6U1 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR021662
Pfam:PF11627 IPI:IPI00362299 Ensembl:ENSRNOT00000007800
Uniprot:F1M6U1
Length = 252
Score = 219 (82.2 bits), Expect = 4.6e-18, P = 4.6e-18
Identities = 52/153 (33%), Positives = 78/153 (50%)
Query: 1 MKDRKTGQPRGFGFVTYADPSVVDKVIEDT-HIINGKQVEIKRTIPK--GAVGSKDFKTK 57
M+D T +PRGFGFVTY VD + H ++G+ VE KR + + K
Sbjct: 39 MRDPNTKRPRGFGFVTYTTVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTVK 98
Query: 58 KIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAK 117
KIFVG I E +++F Q+G ++ +IM D + + RGF F+TFD +VD ++ +
Sbjct: 99 KIFVGSIKEDTEEHHLREYFEQYGKIEVIEIMTDRGSGQKRGFVFVTFDDHDSVDKIVIQ 158
Query: 118 GNKLELAGAQVEVKKAEPKKPNLPQPSYRRYNN 150
+ G EV+KA K+ S +R N
Sbjct: 159 KYHT-VNGHNCEVRKALSKQEMASASSSQRGRN 190
Score = 126 (49.4 bits), Expect = 9.6e-07, P = 9.6e-07
Identities = 26/77 (33%), Positives = 47/77 (61%)
Query: 58 KIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLL-A 116
K+F+ G+ ++ + F ++G + + +MRD +T R RGFGF+T+ T + VD + A
Sbjct: 8 KLFIDGLSFETTDESLRSHFERWGTLTDCVVMRDPNTKRPRGFGFVTYTTVEEVDAAMNA 67
Query: 117 KGNKLELAGAQVEVKKA 133
+ +K++ G VE K+A
Sbjct: 68 RPHKVD--GRVVEPKRA 82
>UNIPROTKB|F1P5I0 [details] [associations]
symbol:LOC100859627 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR021662
Pfam:PF11627 GeneTree:ENSGT00700000104376 EMBL:AADN02020007
EMBL:AADN02020008 EMBL:AADN02020009 EMBL:AADN02020010
EMBL:AADN02020011 EMBL:AADN02020012 EMBL:AADN02020013
IPI:IPI00971390 Ensembl:ENSGALT00000015053 Uniprot:F1P5I0
Length = 288
Score = 218 (81.8 bits), Expect = 5.8e-18, P = 5.8e-18
Identities = 48/140 (34%), Positives = 75/140 (53%)
Query: 1 MKDRKTGQPRGFGFVTYADPSVVDKVIEDT-HIINGKQVEIKRTIPK--GAVGSKDFKTK 57
M+D +T + RGFGFVTY+ VD + H ++G+ VE KR + + K
Sbjct: 41 MRDPQTKRSRGFGFVTYSCVEEVDAAMSARPHKVDGRVVEPKRAVSREDSVKPGAHLTVK 100
Query: 58 KIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAK 117
KIFVGGI E +++F ++G ++ ++M D + + RGF F+TFD VD ++ +
Sbjct: 101 KIFVGGIKEDTEEYNLREYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVVQ 160
Query: 118 GNKLELAGAQVEVKKAEPKK 137
+ G EVKKA K+
Sbjct: 161 KYHT-INGHNCEVKKALSKQ 179
Score = 141 (54.7 bits), Expect = 2.4e-09, P = 2.4e-09
Identities = 28/85 (32%), Positives = 53/85 (62%)
Query: 57 KKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLL- 115
+K+F+GG+ +D ++ F ++G + + +MRD T RSRGFGF+T+ + VD +
Sbjct: 9 RKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDAAMS 68
Query: 116 AKGNKLELAGAQVEVKKAEPKKPNL 140
A+ +K++ G VE K+A ++ ++
Sbjct: 69 ARPHKVD--GRVVEPKRAVSREDSV 91
>UNIPROTKB|F1NCI5 [details] [associations]
symbol:HNRNPA0 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0006954 "inflammatory
response" evidence=IEA] [GO:0017091 "AU-rich element binding"
evidence=IEA] [GO:0019901 "protein kinase binding" evidence=IEA]
[GO:0032496 "response to lipopolysaccharide" evidence=IEA]
[GO:0070935 "3'-UTR-mediated mRNA stabilization" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0000166 GO:GO:0006954
Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0070935
GeneTree:ENSGT00700000104255 OMA:EDNQHAL EMBL:AADN02028465
IPI:IPI00573116 Ensembl:ENSGALT00000009947 Uniprot:F1NCI5
Length = 328
Score = 218 (81.8 bits), Expect = 5.8e-18, P = 5.8e-18
Identities = 50/137 (36%), Positives = 76/137 (55%)
Query: 5 KTGQPRGFGFVTYADPSVVDKVIEDT-HIINGKQVEIKRTIPK--GAVGSKDFKTKKIFV 61
+T + R FGFVTY+ D + + H ++G VE+KR + + A K KK+FV
Sbjct: 64 QTKRSRCFGFVTYSAVEEADAAMAASPHAVDGNSVELKRAVSREDSAKPGAHAKVKKLFV 123
Query: 62 GGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDL-LAKGNK 120
GG+ V E + F QFG V++ +I+ D + + RGFGF+ F A D + K +
Sbjct: 124 GGLKGDVGEGDLVQHFSQFGPVEKAEIIADKQSGKKRGFGFVYFQNHDAADKAAVVKFHP 183
Query: 121 LELAGAQVEVKKAEPKK 137
++ G +VEVKKA PK+
Sbjct: 184 IQ--GHRVEVKKAVPKE 198
Score = 113 (44.8 bits), Expect = 0.00012, P = 0.00012
Identities = 24/89 (26%), Positives = 47/89 (52%)
Query: 45 PKGAVGSKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFIT 104
P+ G ++ + K+F+GG+ E ++ F +G + + ++ + T RSR FGF+T
Sbjct: 16 PRRGTGMENSQLCKLFIGGLNVQTTEAGLREHFAAYGTLTDCVVVLNPQTKRSRCFGFVT 75
Query: 105 FDTEQAVDDLLAKGNKLELAGAQVEVKKA 133
+ + D +A + + G VE+K+A
Sbjct: 76 YSAVEEADAAMA-ASPHAVDGNSVELKRA 103
>UNIPROTKB|F1RH94 [details] [associations]
symbol:HNRNPA0 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0070935 "3'-UTR-mediated mRNA stabilization"
evidence=IEA] [GO:0032496 "response to lipopolysaccharide"
evidence=IEA] [GO:0019901 "protein kinase binding" evidence=IEA]
[GO:0017091 "AU-rich element binding" evidence=IEA] [GO:0006954
"inflammatory response" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0000166 GO:GO:0032496
GO:GO:0006954 Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0070935
GeneTree:ENSGT00700000104255 OMA:GPMKQNL EMBL:CU468422
Ensembl:ENSSSCT00000015648 Uniprot:F1RH94
Length = 315
Score = 218 (81.8 bits), Expect = 5.8e-18, P = 5.8e-18
Identities = 50/137 (36%), Positives = 78/137 (56%)
Query: 5 KTGQPRGFGFVTYADPSVVDKVIEDT-HIINGKQVEIKRTIPK--GAVGSKDFKTKKIFV 61
+T + R FGFVTY++ D + + H ++G VE+KR + + A K KK+FV
Sbjct: 48 QTKRSRCFGFVTYSNVEEADAAMAASPHAVDGNTVELKRAVSREDSARPGAHAKVKKLFV 107
Query: 62 GGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDL-LAKGNK 120
GG+ V E + + F QFG V++ +I+ D + + RGFGF+ F A D + K +
Sbjct: 108 GGLKGDVAEGDLIEHFSQFGTVEKAEIIADKQSGKKRGFGFVYFQNHDAADKAAVVKFHP 167
Query: 121 LELAGAQVEVKKAEPKK 137
++ G +VEVKKA PK+
Sbjct: 168 IQ--GHRVEVKKAVPKE 182
Score = 106 (42.4 bits), Expect = 0.00086, P = 0.00086
Identities = 25/86 (29%), Positives = 46/86 (53%)
Query: 48 AVGSKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDT 107
AV ++ + K+F+GG+ +E + F FG + + ++ + T RSR FGF+T+
Sbjct: 3 AVEMENSQLCKLFIGGLNVQTSESGLRGHFEAFGTLTDCVVVVNPQTKRSRCFGFVTYSN 62
Query: 108 EQAVDDLLAKGNKLELAGAQVEVKKA 133
+ D +A + + G VE+K+A
Sbjct: 63 VEEADAAMA-ASPHAVDGNTVELKRA 87
>UNIPROTKB|E2RBV8 [details] [associations]
symbol:HNRNPA0 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0070935 "3'-UTR-mediated mRNA
stabilization" evidence=IEA] [GO:0032496 "response to
lipopolysaccharide" evidence=IEA] [GO:0019901 "protein kinase
binding" evidence=IEA] [GO:0017091 "AU-rich element binding"
evidence=IEA] [GO:0006954 "inflammatory response" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0000166 GO:GO:0032496 GO:GO:0006954 Gene3D:3.30.70.330
GO:GO:0017091 GO:GO:0070935 GeneTree:ENSGT00700000104255 CTD:10949
KO:K12894 OMA:GPMKQNL EMBL:AAEX03007810 RefSeq:XP_538645.2
ProteinModelPortal:E2RBV8 Ensembl:ENSCAFT00000001730 GeneID:481524
KEGG:cfa:481524 NextBio:20856300 Uniprot:E2RBV8
Length = 310
Score = 218 (81.8 bits), Expect = 5.8e-18, P = 5.8e-18
Identities = 50/137 (36%), Positives = 78/137 (56%)
Query: 5 KTGQPRGFGFVTYADPSVVDKVIEDT-HIINGKQVEIKRTIPK--GAVGSKDFKTKKIFV 61
+T + R FGFVTY++ D + + H ++G VE+KR + + A K KK+FV
Sbjct: 43 QTKRSRCFGFVTYSNVEEADAAMAASPHAVDGNTVELKRAVSREDSARPGAHAKVKKLFV 102
Query: 62 GGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDL-LAKGNK 120
GG+ V E + + F QFG V++ +I+ D + + RGFGF+ F A D + K +
Sbjct: 103 GGLKGDVAEGDLIEHFSQFGTVEKAEIIADKQSGKKRGFGFVYFQNHDAADKAAVVKFHP 162
Query: 121 LELAGAQVEVKKAEPKK 137
++ G +VEVKKA PK+
Sbjct: 163 IQ--GHRVEVKKAVPKE 177
>UNIPROTKB|Q13151 [details] [associations]
symbol:HNRNPA0 "Heterogeneous nuclear ribonucleoprotein A0"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
[GO:0019901 "protein kinase binding" evidence=IPI] [GO:0017091
"AU-rich element binding" evidence=IDA] [GO:0070935
"3'-UTR-mediated mRNA stabilization" evidence=ISS;TAS] [GO:0006954
"inflammatory response" evidence=ISS] [GO:0032496 "response to
lipopolysaccharide" evidence=ISS] [GO:0003723 "RNA binding"
evidence=TAS] [GO:0006397 "mRNA processing" evidence=TAS]
[GO:0000398 "mRNA splicing, via spliceosome" evidence=TAS]
[GO:0005654 "nucleoplasm" evidence=TAS] [GO:0008380 "RNA splicing"
evidence=TAS] [GO:0010467 "gene expression" evidence=TAS]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] Reactome:REACT_71 InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005654 EMBL:CH471062 GO:GO:0000166 GO:GO:0032496
GO:GO:0006954 Reactome:REACT_1675 Gene3D:3.30.70.330 GO:GO:0017091
GO:GO:0030529 GO:GO:0000398 eggNOG:COG0724 GO:GO:0070935
HOVERGEN:HBG002295 HOGENOM:HOG000234442 EMBL:U23803 EMBL:CR456986
EMBL:BC001008 EMBL:BC007271 EMBL:BC009284 EMBL:BC011972
EMBL:BC012980 EMBL:BC018949 EMBL:BC019271 EMBL:BC028976
EMBL:BC030249 IPI:IPI00011913 RefSeq:NP_006796.1 UniGene:Hs.645902
UniGene:Hs.96996 ProteinModelPortal:Q13151 SMR:Q13151 IntAct:Q13151
MINT:MINT-5001237 STRING:Q13151 PhosphoSite:Q13151 DMDM:8134660
REPRODUCTION-2DPAGE:Q13151 SWISS-2DPAGE:Q13151 PaxDb:Q13151
PeptideAtlas:Q13151 PRIDE:Q13151 DNASU:10949
Ensembl:ENST00000314940 GeneID:10949 KEGG:hsa:10949 UCSC:uc003lbt.3
CTD:10949 GeneCards:GC05M137114 HGNC:HGNC:5030 HPA:HPA036569
MIM:609409 neXtProt:NX_Q13151 PharmGKB:PA162391106
InParanoid:Q13151 KO:K12894 OMA:GPMKQNL OrthoDB:EOG4W6NX4
PhylomeDB:Q13151 GenomeRNAi:10949 NextBio:41601 Bgee:Q13151
CleanEx:HS_HNRNPA0 Genevestigator:Q13151 GermOnline:ENSG00000177733
Uniprot:Q13151
Length = 305
Score = 218 (81.8 bits), Expect = 5.8e-18, P = 5.8e-18
Identities = 50/137 (36%), Positives = 78/137 (56%)
Query: 5 KTGQPRGFGFVTYADPSVVDKVIEDT-HIINGKQVEIKRTIPK--GAVGSKDFKTKKIFV 61
+T + R FGFVTY++ D + + H ++G VE+KR + + A K KK+FV
Sbjct: 43 QTKRSRCFGFVTYSNVEEADAAMAASPHAVDGNTVELKRAVSREDSARPGAHAKVKKLFV 102
Query: 62 GGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDL-LAKGNK 120
GG+ V E + + F QFG V++ +I+ D + + RGFGF+ F A D + K +
Sbjct: 103 GGLKGDVAEGDLIEHFSQFGTVEKAEIIADKQSGKKRGFGFVYFQNHDAADKAAVVKFHP 162
Query: 121 LELAGAQVEVKKAEPKK 137
++ G +VEVKKA PK+
Sbjct: 163 IQ--GHRVEVKKAVPKE 177
>UNIPROTKB|F1M3H8 [details] [associations]
symbol:F1M3H8 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0000166 GO:GO:0032496 GO:GO:0006954
Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0070935
GeneTree:ENSGT00700000104255 IPI:IPI00777708
ProteinModelPortal:F1M3H8 PRIDE:F1M3H8 Ensembl:ENSRNOT00000061231
Uniprot:F1M3H8
Length = 194
Score = 218 (81.8 bits), Expect = 5.8e-18, P = 5.8e-18
Identities = 50/137 (36%), Positives = 79/137 (57%)
Query: 5 KTGQPRGFGFVTYADPSVVDKVIEDT-HIINGKQVEIKRTIPK--GAVGSKDFKTKKIFV 61
+T + R FGFVTY++ D + + H ++G VE+KR + + A K KK+FV
Sbjct: 43 QTKRSRCFGFVTYSNVEEADAAMAASPHAVDGNTVELKRAVSREDSARPGAHAKVKKLFV 102
Query: 62 GGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDL-LAKGNK 120
GG+ V E + + F QFG V++ +I+ D + + RGFGF+ F + A D + K +
Sbjct: 103 GGLKGDVAEGDLIEHFSQFGAVEKAEIIADKQSGKKRGFGFVYFQSHDAADKAAVVKFHP 162
Query: 121 LELAGAQVEVKKAEPKK 137
++ G +VEVKKA PK+
Sbjct: 163 IQ--GHRVEVKKAVPKE 177
>UNIPROTKB|J9PBP6 [details] [associations]
symbol:MSI1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104255 EMBL:AAEX03014735
Ensembl:ENSCAFT00000045257 OMA:LAQTRHE Uniprot:J9PBP6
Length = 471
Score = 223 (83.6 bits), Expect = 8.7e-18, P = 8.7e-18
Identities = 61/165 (36%), Positives = 92/165 (55%)
Query: 1 MKD--RKTGQPRGFGFVTYADPSVVDKVI-EDTHIINGKQVEI--KRTIPKGAVGSKDF- 54
M+D K + RGFGFVT+ D + VDKV+ + H ++ K V+I K P+ A
Sbjct: 139 MRDPLTKRSRCRGFGFVTFMDQAGVDKVLAQSRHELDSKTVQIDPKVAFPRRAQPKVQMV 198
Query: 55 -KTKKIFVGGIPSSVNEDEFKDFFMQFGDVQ--EHQIMRDHSTSRSRG--FGFITFDTEQ 109
+TKKIFVGG+ + ++ K +F QF VQ + +M D +T+R RG FGF+TF++E
Sbjct: 199 TRTKKIFVGGLSVNTTVEDVKQYFEQFEKVQVDDAMLMFDKTTNRHRGVGFGFVTFESED 258
Query: 110 AVDDLLA-KGNKLELAGAQVEVKKAEPKKPNLPQPSYRRYNNPKP 153
V+ + +++ QVE KKA+PK+ P S R + P
Sbjct: 259 IVEKVCEIHFHEINNKMVQVECKKAQPKEVMSPTGSARGRSRVMP 303
Score = 131 (51.2 bits), Expect = 4.3e-07, P = 4.3e-07
Identities = 40/115 (34%), Positives = 64/115 (55%)
Query: 35 GKQVEIKRTIPKGAVGSK-DFKTKKIFVGGI---PS-SVNE----DEFKDFFMQFGDVQE 85
G Q +R + GA G + + ++ GG PS S E + +++F QFG+V+E
Sbjct: 76 GGQWRARRLLGAGAAGPRRGHRGQRTGEGGRARGPSWSEGECVVTEGLREYFGQFGEVKE 135
Query: 86 HQIMRDHSTSRSR--GFGFITFDTEQAVDDLLAKG-NKLELAGAQVEVKKAEPKK 137
+MRD T RSR GFGF+TF + VD +LA+ ++L+ Q++ K A P++
Sbjct: 136 CLVMRDPLTKRSRCRGFGFVTFMDQAGVDKVLAQSRHELDSKTVQIDPKVAFPRR 190
>UNIPROTKB|H0YHB7 [details] [associations]
symbol:MSI1 "RNA-binding protein Musashi homolog 1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AC003982 HGNC:HGNC:7330 Ensembl:ENST00000546985 Uniprot:H0YHB7
Length = 233
Score = 215 (80.7 bits), Expect = 1.2e-17, P = 1.2e-17
Identities = 49/136 (36%), Positives = 78/136 (57%)
Query: 19 DPSVVDKVI-EDTHIINGKQVEIKRTIPKGAVGSKDFKTKKIFVGGIPSSVNEDEFKDFF 77
D + VDKV+ + H ++ K ++ K P+ A +TKKIFVGG+ + ++ K +F
Sbjct: 2 DQAGVDKVLAQSRHELDSKTIDPKVAFPRRAQPKMVTRTKKIFVGGLSVNTTVEDVKQYF 61
Query: 78 MQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVKKAEPKK 137
QFG V + +M D +T+R RGFGF+TF++E V+ + + + E+ VE KKA+PK+
Sbjct: 62 EQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKV-CEIHFHEINNKMVECKKAQPKE 120
Query: 138 PNLPQPSYRRYNNPKP 153
P S R + P
Sbjct: 121 VMSPTGSARGRSRVMP 136
Score = 106 (42.4 bits), Expect = 0.00045, P = 0.00045
Identities = 23/47 (48%), Positives = 29/47 (61%)
Query: 1 MKDRKTGQPRGFGFVTYADPSVVDKVIE-DTHIINGKQVEIKRTIPK 46
M D+ T + RGFGFVT+ +V+KV E H IN K VE K+ PK
Sbjct: 73 MFDKTTNRHRGFGFVTFESEDIVEKVCEIHFHEINNKMVECKKAQPK 119
>UNIPROTKB|F1PGQ0 [details] [associations]
symbol:F1PGQ0 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR021662
Pfam:PF11627 GeneTree:ENSGT00550000074566 EMBL:AAEX03010176
Ensembl:ENSCAFT00000005615 OMA:RRYQRIT Uniprot:F1PGQ0
Length = 318
Score = 197 (74.4 bits), Expect = 1.2e-17, Sum P(2) = 1.2e-17
Identities = 48/149 (32%), Positives = 75/149 (50%)
Query: 1 MKDRKTGQPRGFGFVTYADPSVVDKVIEDTHIINGKQVEIKRTIPK--GAVGSKDFKTKK 58
M+D T + RG GF+ YA VD + ++G+ VE KR + + KK
Sbjct: 46 MRDPNTKRSRGVGFLMYATVEEVDAAMNARPHVDGRVVEPKRAVSREDSQRPGAHLTVKK 105
Query: 59 IFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKG 118
IFVGGI E +D+F Q+G ++ +IM D + + +GF F+TFD +VD ++ +
Sbjct: 106 IFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGK-KGFAFVTFDDHDSVDKIVIQK 164
Query: 119 NKLELAGAQVEVKKAEPKKPNLPQPSYRR 147
+ G EV+KA K+ S +R
Sbjct: 165 YH-PVNGHSCEVRKALSKQEMASASSTQR 192
Score = 123 (48.4 bits), Expect = 1.1e-06, Sum P(2) = 1.1e-06
Identities = 27/76 (35%), Positives = 42/76 (55%)
Query: 58 KIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAK 117
K+F+GG+ E+ + F Q+G + +MRD +T RSRG GF+ + T + VD A
Sbjct: 15 KLFIGGLSFETTEESLRSHFEQWGTFTDCVVMRDPNTKRSRGVGFLMYATVEEVD--AAM 72
Query: 118 GNKLELAGAQVEVKKA 133
+ + G VE K+A
Sbjct: 73 NARPHVDGRVVEPKRA 88
Score = 35 (17.4 bits), Expect = 1.2e-17, Sum P(2) = 1.2e-17
Identities = 7/15 (46%), Positives = 9/15 (60%)
Query: 234 GRYGGFNRGYDVTGD 248
G YGG GY+ G+
Sbjct: 235 GGYGGSGDGYNGFGN 249
>UNIPROTKB|G3V6A4 [details] [associations]
symbol:Hnrpd "Protein Hnrpd" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:620365 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0030529 GeneTree:ENSGT00700000104347 KO:K13044
InterPro:IPR012956 Pfam:PF08143 RefSeq:NP_001076009.1
UniGene:Rn.94022 GeneID:79256 KEGG:rno:79256 CTD:79256
NextBio:614748 EMBL:CH474022 Ensembl:ENSRNOT00000003158
Uniprot:G3V6A4
Length = 304
Score = 214 (80.4 bits), Expect = 1.6e-17, P = 1.6e-17
Identities = 51/137 (37%), Positives = 82/137 (59%)
Query: 3 DRKTGQPRGFGFVTYADPSVVDKVIEDT-HIINGKQVEIKRTIPKGAVGSKDFKTKKIFV 61
D TG+ RGFGFV + + VDKV++ H +NGK ++ KR A+ +K+ KKIFV
Sbjct: 129 DPITGRSRGFGFVLFKESESVDKVMDQKEHKLNGKVIDPKRA---KAMKTKE-PVKKIFV 184
Query: 62 GGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKL 121
GG+ E++ +++F FG+V+ ++ D+ T++ RGF FITF E+ V ++ K K
Sbjct: 185 GGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEK--KY 242
Query: 122 ELAG-AQVEVKKAEPKK 137
G ++ E+K A K+
Sbjct: 243 HNVGLSKCEIKVAMSKE 259
Score = 146 (56.5 bits), Expect = 7.9e-10, P = 7.9e-10
Identities = 31/85 (36%), Positives = 50/85 (58%)
Query: 58 KIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLL-A 116
K+F+GG+ + + KD+F +FGDV + + D T RSRGFGF+ F ++VD ++
Sbjct: 96 KMFIGGLSWDTTKKDLKDYFSKFGDVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQ 155
Query: 117 KGNKLELAGAQVEVKKAEPKKPNLP 141
K +KL G ++ K+A+ K P
Sbjct: 156 KEHKLN--GKVIDPKRAKAMKTKEP 178
>UNIPROTKB|A5D9H5 [details] [associations]
symbol:HNRPD "Heterogeneous nuclear ribonucleoprotein D"
species:9913 "Bos taurus" [GO:0030529 "ribonucleoprotein complex"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0030529
eggNOG:COG0724 HOGENOM:HOG000234441 HOVERGEN:HBG002295
GeneTree:ENSGT00700000104347 KO:K13044 CTD:3184 InterPro:IPR012956
Pfam:PF08143 EMBL:DAAA02018245 EMBL:BT030594 IPI:IPI00905408
RefSeq:NP_001091533.1 UniGene:Bt.52882 SMR:A5D9H5 STRING:A5D9H5
Ensembl:ENSBTAT00000056365 GeneID:527471 KEGG:bta:527471
NextBio:20874604 Uniprot:A5D9H5
Length = 306
Score = 214 (80.4 bits), Expect = 1.6e-17, P = 1.6e-17
Identities = 51/137 (37%), Positives = 82/137 (59%)
Query: 3 DRKTGQPRGFGFVTYADPSVVDKVIEDT-HIINGKQVEIKRTIPKGAVGSKDFKTKKIFV 61
D TG+ RGFGFV + + VDKV++ H +NGK ++ KR A+ +K+ KKIFV
Sbjct: 131 DPITGRSRGFGFVLFKESESVDKVMDQKEHKLNGKVIDPKRA---KAMKTKE-PVKKIFV 186
Query: 62 GGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKL 121
GG+ E++ +++F FG+V+ ++ D+ T++ RGF FITF E+ V ++ K K
Sbjct: 187 GGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEK--KY 244
Query: 122 ELAG-AQVEVKKAEPKK 137
G ++ E+K A K+
Sbjct: 245 HNVGLSKCEIKVAMSKE 261
Score = 142 (55.0 bits), Expect = 2.2e-09, P = 2.2e-09
Identities = 30/85 (35%), Positives = 50/85 (58%)
Query: 58 KIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLL-A 116
K+F+GG+ + + KD+F +FG+V + + D T RSRGFGF+ F ++VD ++
Sbjct: 98 KMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQ 157
Query: 117 KGNKLELAGAQVEVKKAEPKKPNLP 141
K +KL G ++ K+A+ K P
Sbjct: 158 KEHKLN--GKVIDPKRAKAMKTKEP 180
>UNIPROTKB|H0YA96 [details] [associations]
symbol:HNRNPD "Heterogeneous nuclear ribonucleoprotein D0"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC124016 HGNC:HGNC:5036
ChiTaRS:HNRNPD Ensembl:ENST00000514671 Uniprot:H0YA96
Length = 210
Score = 214 (80.4 bits), Expect = 1.6e-17, P = 1.6e-17
Identities = 51/137 (37%), Positives = 82/137 (59%)
Query: 3 DRKTGQPRGFGFVTYADPSVVDKVIEDT-HIINGKQVEIKRTIPKGAVGSKDFKTKKIFV 61
D TG+ RGFGFV + + VDKV++ H +NGK ++ KR A+ +K+ KKIFV
Sbjct: 35 DPITGRSRGFGFVLFKESESVDKVMDQKEHKLNGKVIDPKRA---KAMKTKE-PVKKIFV 90
Query: 62 GGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKL 121
GG+ E++ +++F FG+V+ ++ D+ T++ RGF FITF E+ V ++ K K
Sbjct: 91 GGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEK--KY 148
Query: 122 ELAG-AQVEVKKAEPKK 137
G ++ E+K A K+
Sbjct: 149 HNVGLSKCEIKVAMSKE 165
Score = 142 (55.0 bits), Expect = 6.6e-10, P = 6.6e-10
Identities = 30/85 (35%), Positives = 50/85 (58%)
Query: 58 KIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLL-A 116
K+F+GG+ + + KD+F +FG+V + + D T RSRGFGF+ F ++VD ++
Sbjct: 2 KMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQ 61
Query: 117 KGNKLELAGAQVEVKKAEPKKPNLP 141
K +KL G ++ K+A+ K P
Sbjct: 62 KEHKLN--GKVIDPKRAKAMKTKEP 84
>UNIPROTKB|F1M6M1 [details] [associations]
symbol:F1M6M1 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00550000074566 IPI:IPI00563231
Ensembl:ENSRNOT00000040517 Uniprot:F1M6M1
Length = 253
Score = 191 (72.3 bits), Expect = 1.8e-17, Sum P(2) = 1.8e-17
Identities = 45/135 (33%), Positives = 68/135 (50%)
Query: 6 TGQPRGFGFVTYADPSVVDKVIEDT-HIINGKQVEIKRTIPKGAVGSKD--FKTKKIFVG 62
T + RGFGFVT VD + H ++G+ VE KR + + D KKIFVG
Sbjct: 1 TKRSRGFGFVTCTSVEKVDATMNARPHKVDGRVVEPKRAMSREDSQRPDAHLTVKKIFVG 60
Query: 63 GIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLE 122
I E +D+F Q+G ++ +IM D + + RGF F+TFD +VD ++ +
Sbjct: 61 SIKEDTEEHHLRDYFEQYGKIELIEIMADRGSEKKRGFAFVTFDDHDSVDKIVTQKYHTV 120
Query: 123 LAGAQVEVKKAEPKK 137
+ EV+K K+
Sbjct: 121 NGHHKCEVRKPLSKQ 135
Score = 36 (17.7 bits), Expect = 1.8e-17, Sum P(2) = 1.8e-17
Identities = 7/15 (46%), Positives = 8/15 (53%)
Query: 228 SSLGYSGRYGGFNRG 242
S G SG Y +N G
Sbjct: 173 SGYGGSGSYDSYNNG 187
>UNIPROTKB|G3N220 [details] [associations]
symbol:G3N220 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005730 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0071013 GeneTree:ENSGT00700000104376 EMBL:DAAA02027300
Ensembl:ENSBTAT00000063435 OMA:GWEDRSH Uniprot:G3N220
Length = 310
Score = 190 (71.9 bits), Expect = 2.7e-17, Sum P(2) = 2.7e-17
Identities = 47/139 (33%), Positives = 69/139 (49%)
Query: 1 MKDRKTGQPRGFGFVTYADPSVVDKVIEDTHIINGKQVEIKRTIPK--GAVGSKDFKTKK 58
M+D KT + RGFGFVTY+ VD + + + VE KR + + KK
Sbjct: 1 MRDPKTKRSRGFGFVTYSCVEEVDAAMYARP--HKRVVEPKRAVSREDSVKPGAHLTVKK 58
Query: 59 IFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKG 118
IFVGGI E +D F +G ++ ++M D + + RG F+TFD VD ++ +
Sbjct: 59 IFVGGIKEDTEEYNLRDCFENYGKIETIEVMEDRQSGKKRGCAFVTFDDHDTVDKIVVQK 118
Query: 119 NKLELAGAQVEVKKAEPKK 137
+ G EVKKA K+
Sbjct: 119 YHT-INGHNCEVKKALSKQ 136
Score = 39 (18.8 bits), Expect = 2.7e-17, Sum P(2) = 2.7e-17
Identities = 9/19 (47%), Positives = 9/19 (47%)
Query: 227 PSSLG-YSGRYGGFNRGYD 244
P G G YGG GYD
Sbjct: 225 PGGYGNQGGGYGGGGGGYD 243
Score = 38 (18.4 bits), Expect = 3.4e-17, Sum P(2) = 3.4e-17
Identities = 8/17 (47%), Positives = 10/17 (58%)
Query: 231 GYSGRYGGFNRGYDVTG 247
G G YGG + GY+ G
Sbjct: 186 GSRGSYGGGDGGYNGFG 202
Score = 36 (17.7 bits), Expect = 5.5e-17, Sum P(2) = 5.5e-17
Identities = 7/18 (38%), Positives = 10/18 (55%)
Query: 231 GYSGRYGGFNRGYDVTGD 248
G G Y G+N G + G+
Sbjct: 237 GGGGGYDGYNEGGNFGGN 254
>UNIPROTKB|F1M5N1 [details] [associations]
symbol:F1M5N1 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 IPI:IPI00567689
ProteinModelPortal:F1M5N1 Ensembl:ENSRNOT00000023344 Uniprot:F1M5N1
Length = 207
Score = 211 (79.3 bits), Expect = 3.2e-17, P = 3.2e-17
Identities = 50/146 (34%), Positives = 76/146 (52%)
Query: 1 MKDRKTGQPRGFGFVTYADPSVVDKVIEDT-HIINGKQVEIKRTIP-KGAVGSKDFKTKK 58
M+D T + RGFGFVTYA VD + H ++G+ VE KR + + + + K
Sbjct: 42 MRDPNTKRSRGFGFVTYATVEEVDAAMNARPHKVDGRVVEPKRAVSIEDSQRPGAYLNMK 101
Query: 59 IFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKG 118
IFVG I E +D+F Q+G + +I+ D + + RGF F+TFD +VD ++ +
Sbjct: 102 IFVGAIKEDTEEHHLRDYFGQYGKTEVIEIVTDRGSGKKRGFAFVTFDDRDSVDKIVIQK 161
Query: 119 NKLELAGAQVEVKKAEPKKPNLPQPS 144
+ G EV+KA P K + S
Sbjct: 162 YHT-VNGHNCEVRKA-PSKQEMASAS 185
Score = 144 (55.7 bits), Expect = 4.1e-10, P = 4.1e-10
Identities = 29/80 (36%), Positives = 51/80 (63%)
Query: 55 KTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDL 114
+ +K+F+GG+ ++ + F Q+G + + +MRD +T RSRGFGF+T+ T + VD
Sbjct: 8 QVRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAA 67
Query: 115 L-AKGNKLELAGAQVEVKKA 133
+ A+ +K++ G VE K+A
Sbjct: 68 MNARPHKVD--GRVVEPKRA 85
>UNIPROTKB|F1MTY3 [details] [associations]
symbol:F1MTY3 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR021662
Pfam:PF11627 GeneTree:ENSGT00550000074566 EMBL:DAAA02006340
IPI:IPI00699446 Ensembl:ENSBTAT00000013110 Uniprot:F1MTY3
Length = 301
Score = 185 (70.2 bits), Expect = 5.1e-17, Sum P(2) = 5.1e-17
Identities = 53/151 (35%), Positives = 76/151 (50%)
Query: 1 MKDRKTGQPRGFGFVTYADPSVVDKVIEDT-HIINGKQVEIKRTIPK-GAVGSKDFKT-K 57
M D T RGF FVTYA VD + H ++ + VE KR + + G+ T K
Sbjct: 42 MTDPNTKCSRGFRFVTYATVEEVDAAMNARPHKVDRRVVEPKRGVSREGSQRPGAHLTVK 101
Query: 58 KIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDD-LLA 116
KIF GGI E +D+F G ++ +IM D S+ + RGF F+TFD +VD ++
Sbjct: 102 KIFAGGIKEDTEERHLRDYFENNGKIEVIEIMTDPSSGKKRGFAFVTFDDHDSVDKTVIQ 161
Query: 117 KGNKLELAGAQVEVKKAEPKKPNLPQPSYRR 147
K + + G EV+KA K+ S +R
Sbjct: 162 KYHTVN--GHNREVRKALSKQEMASASSSQR 190
Score = 41 (19.5 bits), Expect = 5.1e-17, Sum P(2) = 5.1e-17
Identities = 8/15 (53%), Positives = 10/15 (66%)
Query: 234 GRYGGFNRGYDVTGD 248
GRYGG GY+ G+
Sbjct: 226 GRYGGGGDGYNGFGN 240
>UNIPROTKB|F1LUM4 [details] [associations]
symbol:F1LUM4 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 IPI:IPI00389838
ProteinModelPortal:F1LUM4 Ensembl:ENSRNOT00000031839 Uniprot:F1LUM4
Length = 209
Score = 209 (78.6 bits), Expect = 5.3e-17, P = 5.3e-17
Identities = 48/140 (34%), Positives = 73/140 (52%)
Query: 1 MKDRKTGQPRGFGFVTYADPSVVDKVI-EDTHIINGKQVEIKRTIPK--GAVGSKDFKTK 57
M D +T RGFGFVTY+ VD + H ++G+ VE KR + + K
Sbjct: 31 MTDPQTEHSRGFGFVTYSCVEEVDAAMCAWPHKVDGRVVEPKRAVSREDSVKPGAHLTVK 90
Query: 58 KIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAK 117
KIFVGGI E +D+F ++G ++ ++M D + + RGF F+TFD VD ++ +
Sbjct: 91 KIFVGGIKEDTEEYNLRDYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVFQ 150
Query: 118 GNKLELAGAQVEVKKAEPKK 137
+ + EVKKA K+
Sbjct: 151 EHHA-INRHNCEVKKAVSKQ 169
Score = 104 (41.7 bits), Expect = 0.00060, P = 0.00060
Identities = 23/83 (27%), Positives = 46/83 (55%)
Query: 59 IFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLL-AK 117
+ +GG+ +D ++ ++G + + +M D T SRGFGF+T+ + VD + A
Sbjct: 1 LLIGGLSFETTDDSLREHSEKWGTLTDCVVMTDPQTEHSRGFGFVTYSCVEEVDAAMCAW 60
Query: 118 GNKLELAGAQVEVKKAEPKKPNL 140
+K++ G VE K+A ++ ++
Sbjct: 61 PHKVD--GRVVEPKRAVSREDSV 81
>UNIPROTKB|F1LYN9 [details] [associations]
symbol:F1LYN9 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 IPI:IPI00368496
Ensembl:ENSRNOT00000035403 Uniprot:F1LYN9
Length = 263
Score = 187 (70.9 bits), Expect = 6.0e-17, Sum P(2) = 6.0e-17
Identities = 50/155 (32%), Positives = 78/155 (50%)
Query: 1 MKDRKTGQPRGFGFVTYADPSVVDKVIEDT-HIINGKQVEIKRTIPKGAVGSKD------ 53
M+D + + RGFG + YA VD + H ++G+ VE PK AV +D
Sbjct: 32 MRDPNSKRSRGFGLIAYATVEEVDAAMNARPHKVDGRVVE-----PKVAVSREDSHRPGA 86
Query: 54 -FKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVD 112
KKIFVGG E + +F Q+G ++ +IM D + + RGF F+TFD + +VD
Sbjct: 87 HLTVKKIFVGGSKEDTEEHHLRVYFEQYGKIEVIEIMTDIGSGKKRGFAFVTFDDQDSVD 146
Query: 113 DLLAKGNKLELAGAQVEVKKAEPKKPNLPQPSYRR 147
+++ + + G EV+KA K+ S +R
Sbjct: 147 NIVIQKYHT-VNGHNCEVRKALLKQEMASASSSQR 180
Score = 111 (44.1 bits), Expect = 3.9e-05, Sum P(2) = 3.9e-05
Identities = 26/77 (33%), Positives = 44/77 (57%)
Query: 58 KIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLL-A 116
K+F+GG+ + + F Q+ + + +MRD ++ RSRGFG I + T + VD + A
Sbjct: 1 KLFIGGLSFETTDKSLRSHFEQWETLTDCVLMRDPNSKRSRGFGLIAYATVEEVDAAMNA 60
Query: 117 KGNKLELAGAQVEVKKA 133
+ +K++ G VE K A
Sbjct: 61 RPHKVD--GRVVEPKVA 75
Score = 35 (17.4 bits), Expect = 6.0e-17, Sum P(2) = 6.0e-17
Identities = 7/15 (46%), Positives = 9/15 (60%)
Query: 234 GRYGGFNRGYDVTGD 248
G YGG GY+ G+
Sbjct: 199 GGYGGSGDGYNGFGN 213
>UNIPROTKB|F1N3T3 [details] [associations]
symbol:F1N3T3 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104376 EMBL:DAAA02019525 IPI:IPI00709098
Ensembl:ENSBTAT00000014774 OMA:FGGYPCY Uniprot:F1N3T3
Length = 352
Score = 191 (72.3 bits), Expect = 1.1e-16, Sum P(2) = 1.1e-16
Identities = 43/127 (33%), Positives = 68/127 (53%)
Query: 10 RGFGFVTYADPSVVDKVIEDT-HIINGKQVEIKRTIP--KGAVGSKDFKTKKIFVGGIPS 66
RGFGFVT++ + VD + H I+G+ V+ KR + K KK+FVGGI
Sbjct: 62 RGFGFVTFSSVAEVDAAMAARPHSIDGRVVDPKRAVSREKSEKQGSLVNVKKLFVGGIKE 121
Query: 67 SVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGA 126
E +++F ++G + +I+ D + + RGFGF+TFD VD ++ + + G
Sbjct: 122 DTEEHHLREYFEKYGKIDAIEIITDRQSGKKRGFGFVTFDDYDPVDKIMLQKYHA-INGH 180
Query: 127 QVEVKKA 133
+ EV KA
Sbjct: 181 RAEVGKA 187
Score = 142 (55.0 bits), Expect = 3.7e-11, Sum P(2) = 3.7e-11
Identities = 28/103 (27%), Positives = 60/103 (58%)
Query: 42 RTIPKGAVGSKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFG 101
+++P ++ + +K+F+GG+ S E+ K+++ Q+G++ + ++R ++ +SRGFG
Sbjct: 6 KSVPVKREKKENEQIRKLFIGGLSSETTEESLKNYYQQWGELTDCVVIRGLASQKSRGFG 65
Query: 102 FITFDTEQAVDDLLAKGNKLELAGAQVEVKKAEPKKPNLPQPS 144
F+TF + VD +A + G V+ K+A ++ + Q S
Sbjct: 66 FVTFSSVAEVDAAMA-ARPHSIDGRVVDPKRAVSREKSEKQGS 107
Score = 103 (41.3 bits), Expect = 0.00095, Sum P(2) = 0.00095
Identities = 19/45 (42%), Positives = 31/45 (68%)
Query: 3 DRKTGQPRGFGFVTYADPSVVDKV-IEDTHIINGKQVEIKRTIPK 46
DR++G+ RGFGFVT+ D VDK+ ++ H ING + E+ + + +
Sbjct: 146 DRQSGKKRGFGFVTFDDYDPVDKIMLQKYHAINGHRAEVGKALSR 190
Score = 37 (18.1 bits), Expect = 1.1e-16, Sum P(2) = 1.1e-16
Identities = 9/17 (52%), Positives = 9/17 (52%)
Query: 227 PSSLGYSGRYGGFNRGY 243
P G SG YGG GY
Sbjct: 337 PGGNGGSGGYGG-GSGY 352
>UNIPROTKB|F1PA19 [details] [associations]
symbol:HNRNPAB "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104347 EMBL:AAEX03007693 EMBL:AAEX03007694
Ensembl:ENSCAFT00000000377 OMA:GNDSSYG Uniprot:F1PA19
Length = 264
Score = 205 (77.2 bits), Expect = 1.4e-16, P = 1.4e-16
Identities = 41/116 (35%), Positives = 71/116 (61%)
Query: 3 DRKTGQPRGFGFVTYADPSVVDKVIEDT-HIINGKQVEIKRTIPKGAVGSKDFKTKKIFV 61
D TG+ RGFGF+ + D + V+KV++ H ++G+ ++ PK A+ K KKIFV
Sbjct: 34 DPNTGRSRGFGFILFKDAASVEKVLDQKEHRLDGRVID-----PKKAMAMKKDPVKKIFV 88
Query: 62 GGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAK 117
GG+ E++ +++F +FG+++ ++ D +++ RGF FITF E+ V +L K
Sbjct: 89 GGLNPEATEEKIREYFGEFGEIEAIELPMDPKSNKRRGFVFITFKEEEPVKKVLEK 144
Score = 141 (54.7 bits), Expect = 1.8e-09, P = 1.8e-09
Identities = 32/81 (39%), Positives = 50/81 (61%)
Query: 58 KIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLL-A 116
K+FVGG+ ++ + KD+F +FG+V + I D +T RSRGFGFI F +V+ +L
Sbjct: 1 KMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLDQ 60
Query: 117 KGNKLELAGAQVEVKKAEPKK 137
K ++L+ G ++ KKA K
Sbjct: 61 KEHRLD--GRVIDPKKAMAMK 79
>UNIPROTKB|F1M2S4 [details] [associations]
symbol:F1M2S4 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 IPI:IPI00951465
ProteinModelPortal:F1M2S4 Ensembl:ENSRNOT00000050715 Uniprot:F1M2S4
Length = 208
Score = 204 (76.9 bits), Expect = 1.8e-16, P = 1.8e-16
Identities = 51/150 (34%), Positives = 76/150 (50%)
Query: 1 MKDRKTGQPRGFGFVTYADPSVVDKVIEDT-HIINGKQVEIKRTIPK--GAVGSKDFKTK 57
M+D T + RGFGFVTYA VD + H ++G+ VE KR + + K
Sbjct: 39 MRDPNTKRSRGFGFVTYATVEEVDAAMNARPHKVDGRVVEPKRAVSREDSRRPGAHLTVK 98
Query: 58 KIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAK 117
KIFVG E +D+F Q+G ++ +IM D + + RGF F+TFD +VD ++ +
Sbjct: 99 KIFVG---EDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQ 155
Query: 118 GNKLELAGAQVEVKKAEPKKPNLPQPSYRR 147
+ G EV+KA K+ S +R
Sbjct: 156 KYHT-VNGHNCEVRKALSKQEMASASSSQR 184
Score = 141 (54.7 bits), Expect = 8.4e-10, P = 8.4e-10
Identities = 29/77 (37%), Positives = 49/77 (63%)
Query: 58 KIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLL-A 116
K+F+GG+ ++ + F Q+G + + +MRD +T RSRGFGF+T+ T + VD + A
Sbjct: 8 KLFIGGLSFKTTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA 67
Query: 117 KGNKLELAGAQVEVKKA 133
+ +K++ G VE K+A
Sbjct: 68 RPHKVD--GRVVEPKRA 82
>UNIPROTKB|F1LVU1 [details] [associations]
symbol:F1LVU1 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 IPI:IPI00950080
Ensembl:ENSRNOT00000064004 Uniprot:F1LVU1
Length = 188
Score = 204 (76.9 bits), Expect = 1.8e-16, P = 1.8e-16
Identities = 46/131 (35%), Positives = 71/131 (54%)
Query: 9 PRGFGFVTYADPSVVDKVI-EDTHIINGKQVEIKRTIPK-GAVGSKDFKTKKIFVGGIPS 66
P+ FGFVTY+ VD + H ++G+ VE KR + + +V T KIFVGGI
Sbjct: 41 PQSFGFVTYSCVEEVDAAMCARPHKVDGRVVEPKRAVSREDSVKPGAHLTVKIFVGGIKE 100
Query: 67 SVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGA 126
E +D+F ++G ++ ++M D + + RGF F+TFD VD ++ N + G
Sbjct: 101 DAEEYNLRDYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVV--NYHTINGH 158
Query: 127 QVEVKKAEPKK 137
EV+KA K+
Sbjct: 159 NCEVRKALSKQ 169
Score = 119 (46.9 bits), Expect = 3.0e-06, P = 3.0e-06
Identities = 20/46 (43%), Positives = 32/46 (69%)
Query: 1 MKDRKTGQPRGFGFVTYADPSVVDKVIEDTHIINGKQVEIKRTIPK 46
M+DR++G+ RGF FVT+ D VDK++ + H ING E+++ + K
Sbjct: 123 MEDRQSGKKRGFAFVTFDDHDTVDKIVVNYHTINGHNCEVRKALSK 168
>UNIPROTKB|F8VYN5 [details] [associations]
symbol:HNRNPA1 "Heterogeneous nuclear ribonucleoprotein A1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 GO:GO:0000380 EMBL:AC078778 HGNC:HGNC:5031
ChiTaRS:HNRNPA1 IPI:IPI00644968 ProteinModelPortal:F8VYN5
SMR:F8VYN5 PRIDE:F8VYN5 Ensembl:ENST00000550994 ArrayExpress:F8VYN5
Bgee:F8VYN5 Uniprot:F8VYN5
Length = 113
Score = 204 (76.9 bits), Expect = 1.8e-16, P = 1.8e-16
Identities = 43/109 (39%), Positives = 60/109 (55%)
Query: 1 MKDRKTGQPRGFGFVTYADPSVVDKVIEDT-HIINGKQVEIKRTIPK--GAVGSKDFKTK 57
M+D T + RGFGFVTYA VD + H ++G+ VE KR + + K
Sbjct: 1 MRDPNTKRSRGFGFVTYATVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTVK 60
Query: 58 KIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFD 106
KIFVGGI E +D+F Q+G ++ +IM D + + RGF F+TFD
Sbjct: 61 KIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFD 109
Score = 94 (38.1 bits), Expect = 0.00013, P = 0.00013
Identities = 22/46 (47%), Positives = 32/46 (69%)
Query: 89 MRDHSTSRSRGFGFITFDTEQAVDDLL-AKGNKLELAGAQVEVKKA 133
MRD +T RSRGFGF+T+ T + VD + A+ +K++ G VE K+A
Sbjct: 1 MRDPNTKRSRGFGFVTYATVEEVDAAMNARPHKVD--GRVVEPKRA 44
>UNIPROTKB|J9NZR9 [details] [associations]
symbol:J9NZR9 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104347 EMBL:AAEX03000342
Ensembl:ENSCAFT00000001210 OMA:GSKINAN Uniprot:J9NZR9
Length = 269
Score = 204 (76.9 bits), Expect = 1.8e-16, P = 1.8e-16
Identities = 47/136 (34%), Positives = 77/136 (56%)
Query: 3 DRKTGQPRGFGFVTYADPSVVDKVIE-DTHIINGKQVEIKRTIPKGAVGSKDFKTKKIFV 61
D TG+ RGFGFV + + + VDKV+E H ++ ++ PK A K+ KK+FV
Sbjct: 45 DPVTGRSRGFGFVLFKEAASVDKVLELKEHKLDSMLID-----PKRAKALKE-PPKKVFV 98
Query: 62 GGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKL 121
GG+ E++ K++ FG+++ ++ D T+ RGF FIT+ E+ V LL +
Sbjct: 99 GGLSPDTYEEQIKEYLGAFGEIENIELPMDTKTNERRGFCFITYTDEKPVKKLL-ENRYH 157
Query: 122 ELAGAQVEVKKAEPKK 137
++ + E+K AEPK+
Sbjct: 158 QIGSGKCEIKVAEPKE 173
>UNIPROTKB|E2RJI3 [details] [associations]
symbol:LOC608729 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
KO:K12741 InterPro:IPR021662 Pfam:PF11627
GeneTree:ENSGT00550000074566 EMBL:AAEX03015120 RefSeq:XP_864182.2
ProteinModelPortal:E2RJI3 Ensembl:ENSCAFT00000015269 GeneID:608729
KEGG:cfa:608729 Uniprot:E2RJI3
Length = 321
Score = 205 (77.2 bits), Expect = 1.8e-16, P = 1.8e-16
Identities = 54/151 (35%), Positives = 75/151 (49%)
Query: 1 MKDRKTGQPRGFGFVTYADPSVVDKVIEDT-HIINGKQVEIKRTIPK--GAVGSKDFKTK 57
M+D T RGFGF TYA VD V+ H ++G+ VE KR + + K
Sbjct: 46 MRDPNTKHSRGFGFTTYATREDVDAVMNARPHKMDGRVVEPKRAVSREDSQRPGAHLTVK 105
Query: 58 KIFVGGIPSSVNEDEFKD-FFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLA 116
KIFVGGI E KD FF Q+ ++ +IM D + + RGF F+TFD VD ++
Sbjct: 106 KIFVGGIKEDTEEHHLKDYFFEQYEKIEVIEIMTDRGSGKKRGFAFVTFDDHDFVDKIVI 165
Query: 117 KGNKLELAGAQVEVKKAEPKKPNLPQPSYRR 147
+ + G EV+KA K+ S +R
Sbjct: 166 QKCH-PVNGHDHEVRKALSKQEMASASSSQR 195
Score = 122 (48.0 bits), Expect = 6.9e-06, P = 6.9e-06
Identities = 27/77 (35%), Positives = 46/77 (59%)
Query: 58 KIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLL-A 116
K+F+ G+ S ++ + Q G + + +MRD +T SRGFGF T+ T + VD ++ A
Sbjct: 15 KLFIKGLSSKTTDESLRSHCEQQGALMDCVVMRDPNTKHSRGFGFTTYATREDVDAVMNA 74
Query: 117 KGNKLELAGAQVEVKKA 133
+ +K++ G VE K+A
Sbjct: 75 RPHKMD--GRVVEPKRA 89
>UNIPROTKB|F1SCL3 [details] [associations]
symbol:LOC100522980 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR021662
Pfam:PF11627 GeneTree:ENSGT00700000104376 EMBL:CU986279
RefSeq:XP_003123190.1 Ensembl:ENSSSCT00000014811 GeneID:100522980
KEGG:ssc:100522980 Uniprot:F1SCL3
Length = 354
Score = 188 (71.2 bits), Expect = 2.0e-16, Sum P(2) = 2.0e-16
Identities = 45/133 (33%), Positives = 71/133 (53%)
Query: 1 MKDRKTGQPRGFGFVTYADPSVVDKVIEDT-HIINGKQVEIKRTIPKGAVGSKD--FKTK 57
++D + + RGFGFV ++ + VD + H I+G+ V KR +P+ G TK
Sbjct: 53 IRDPSSQRSRGFGFVIFSSVAEVDAAMAARPHSIDGRVVASKRVVPREESGKPGACVTTK 112
Query: 58 KIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDL-LA 116
K+FVGGI E +D+F ++G + +I+R + R FGF+TFD VD + L
Sbjct: 113 KLFVGGIKEDTTERHLRDYFERYGTIDAIEIIRQ--SGRKTAFGFVTFDDHDPVDKIVLQ 170
Query: 117 KGNKLELAGAQVE 129
K + + AQ+E
Sbjct: 171 KYHTINGHHAQLE 183
Score = 137 (53.3 bits), Expect = 1.1e-10, Sum P(2) = 1.1e-10
Identities = 26/81 (32%), Positives = 48/81 (59%)
Query: 57 KKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLA 116
+K+F+GG+ S E+ ++++ Q+G + + ++RD S+ RSRGFGF+ F + VD +A
Sbjct: 21 RKLFIGGLCSETKEESLRNYYQQWGKLTDCVVIRDPSSQRSRGFGFVIFSSVAEVDAAMA 80
Query: 117 KGNKLELAGAQVEVKKAEPKK 137
+ G V K+ P++
Sbjct: 81 -ARPHSIDGRVVASKRVVPRE 100
Score = 38 (18.4 bits), Expect = 2.0e-16, Sum P(2) = 2.0e-16
Identities = 7/13 (53%), Positives = 7/13 (53%)
Query: 231 GYSGRYGGFNRGY 243
GY G YG GY
Sbjct: 265 GYGGGYGDRGAGY 277
Score = 36 (17.7 bits), Expect = 3.2e-16, Sum P(2) = 3.2e-16
Identities = 7/13 (53%), Positives = 7/13 (53%)
Query: 231 GYSGRYGGFNRGY 243
GYS GF GY
Sbjct: 276 GYSNLSSGFGDGY 288
>UNIPROTKB|F1SCM6 [details] [associations]
symbol:LOC100522063 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR021662
Pfam:PF11627 GeneTree:ENSGT00700000104376 EMBL:CU986279
RefSeq:XP_003123185.1 Ensembl:ENSSSCT00000014807 GeneID:100522063
KEGG:ssc:100522063 Uniprot:F1SCM6
Length = 354
Score = 188 (71.2 bits), Expect = 2.0e-16, Sum P(2) = 2.0e-16
Identities = 45/133 (33%), Positives = 71/133 (53%)
Query: 1 MKDRKTGQPRGFGFVTYADPSVVDKVIEDT-HIINGKQVEIKRTIPKGAVGSKD--FKTK 57
++D + + RGFGFV ++ + VD + H I+G+ V KR +P+ G TK
Sbjct: 53 IRDPSSQRSRGFGFVIFSSVAEVDAAMAARPHSIDGRVVASKRVVPREESGKPGACVTTK 112
Query: 58 KIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDL-LA 116
K+FVGGI E +D+F ++G + +I+R + R FGF+TFD VD + L
Sbjct: 113 KLFVGGIKEDTTERHLRDYFERYGTIDAIEIIRQ--SGRKTAFGFVTFDDHDPVDKIVLQ 170
Query: 117 KGNKLELAGAQVE 129
K + + AQ+E
Sbjct: 171 KYHTINGHHAQLE 183
Score = 137 (53.3 bits), Expect = 1.1e-10, Sum P(2) = 1.1e-10
Identities = 26/81 (32%), Positives = 48/81 (59%)
Query: 57 KKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLA 116
+K+F+GG+ S E+ ++++ Q+G + + ++RD S+ RSRGFGF+ F + VD +A
Sbjct: 21 RKLFIGGLCSETKEESLRNYYQQWGKLTDCVVIRDPSSQRSRGFGFVIFSSVAEVDAAMA 80
Query: 117 KGNKLELAGAQVEVKKAEPKK 137
+ G V K+ P++
Sbjct: 81 -ARPHSIDGRVVASKRVVPRE 100
Score = 38 (18.4 bits), Expect = 2.0e-16, Sum P(2) = 2.0e-16
Identities = 7/13 (53%), Positives = 7/13 (53%)
Query: 231 GYSGRYGGFNRGY 243
GY G YG GY
Sbjct: 265 GYGGGYGDRGAGY 277
Score = 36 (17.7 bits), Expect = 3.2e-16, Sum P(2) = 3.2e-16
Identities = 7/13 (53%), Positives = 7/13 (53%)
Query: 231 GYSGRYGGFNRGY 243
GYS GF GY
Sbjct: 276 GYSNLSSGFGDGY 288
>UNIPROTKB|G5E5V7 [details] [associations]
symbol:G5E5V7 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0071013 "catalytic step 2 spliceosome" evidence=IEA]
[GO:0051170 "nuclear import" evidence=IEA] [GO:0051168 "nuclear
export" evidence=IEA] [GO:0045111 "intermediate filament
cytoskeleton" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0005730 "nucleolus" evidence=IEA] [GO:0005654 "nucleoplasm"
evidence=IEA] [GO:0003697 "single-stranded DNA binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
InterPro:IPR021662 Pfam:PF11627 GeneTree:ENSGT00550000074566
EMBL:DAAA02007960 Ensembl:ENSBTAT00000036150 OMA:ANTMPIL
Uniprot:G5E5V7
Length = 319
Score = 204 (76.9 bits), Expect = 2.2e-16, P = 2.2e-16
Identities = 51/149 (34%), Positives = 74/149 (49%)
Query: 3 DRKTGQPRGFGFVTYADPSVVDKVIEDT-HIINGKQVEIKRTIPK--GAVGSKDFKTKKI 59
D T + RGFGFVTY VD + ++G+ VE KR + + KKI
Sbjct: 56 DPNTKRSRGFGFVTYTTVEEVDAAMNARPQKMDGRVVEPKRAVSREDSQRPGAHLTVKKI 115
Query: 60 FVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGN 119
FVGGI E +D+F Q+G ++ +IM D + + RGF F+TFD +VD ++ +
Sbjct: 116 FVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQ-- 173
Query: 120 KLELA-GAQVEVKKAEPKKPNLPQPSYRR 147
K G EV+KA K+ S +R
Sbjct: 174 KYHTGNGHNCEVRKALSKQEMASASSSQR 202
Score = 128 (50.1 bits), Expect = 7.9e-07, P = 7.9e-07
Identities = 28/78 (35%), Positives = 48/78 (61%)
Query: 57 KKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLL- 115
+K+F+GG+ ++ + F Q+G + + +M D +T RSRGFGF+T+ T + VD +
Sbjct: 23 RKLFIGGLSFETTDESLRSHFEQWGMLTDCVVM-DPNTKRSRGFGFVTYTTVEEVDAAMN 81
Query: 116 AKGNKLELAGAQVEVKKA 133
A+ K++ G VE K+A
Sbjct: 82 ARPQKMD--GRVVEPKRA 97
>UNIPROTKB|E2RF37 [details] [associations]
symbol:E2RF37 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00550000074566 EMBL:AAEX03000660
Ensembl:ENSCAFT00000003502 OMA:MAMCSAN Uniprot:E2RF37
Length = 330
Score = 187 (70.9 bits), Expect = 2.4e-16, Sum P(2) = 2.4e-16
Identities = 46/150 (30%), Positives = 73/150 (48%)
Query: 1 MKDRKTGQPRGFGFVTYADPSVVDKVIE-DTHIINGKQVEIKRTIPK--GAVGSKDFKTK 57
M+D T RGF F+TYA VD + H ++ + VE+K+ + + K
Sbjct: 12 MRDPNTKCSRGFEFLTYATVEDVDAAMNVRPHKVDERVVELKKAVSREDSQRPGAHLTVK 71
Query: 58 KIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAK 117
KIFVGGI + +D+F +G ++ +IM D + R F F+TFD +VD ++ +
Sbjct: 72 KIFVGGIKEDTEQHHLRDYFEHYGKIEVIEIMTDRGSGNKRSFAFVTFDAHDSVDKIVIQ 131
Query: 118 GNKLELAGAQVEVKKAEPKKPNLPQPSYRR 147
+ G EV+KA K+ S +R
Sbjct: 132 KYHT-VNGHNCEVRKALLKQEMASASSSQR 160
Score = 36 (17.7 bits), Expect = 2.4e-16, Sum P(2) = 2.4e-16
Identities = 7/15 (46%), Positives = 8/15 (53%)
Query: 228 SSLGYSGRYGGFNRG 242
S G SG Y +N G
Sbjct: 233 SGYGGSGSYDSYNNG 247
>UNIPROTKB|D4A2D2 [details] [associations]
symbol:D4A2D2 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 OrthoDB:EOG4HQDKF
InterPro:IPR021662 Pfam:PF11627 GeneTree:ENSGT00550000074566
IPI:IPI00559583 ProteinModelPortal:D4A2D2
Ensembl:ENSRNOT00000032337 Uniprot:D4A2D2
Length = 262
Score = 202 (76.2 bits), Expect = 2.9e-16, P = 2.9e-16
Identities = 53/150 (35%), Positives = 77/150 (51%)
Query: 1 MKDRKTGQPRGFGFVTYADPSVVDKVIEDT-HIINGKQVEIKRTIPKGAVGSKDFK--TK 57
M+D T + RGFGFVTYA VD + H ++G+ VE P+ AV +D T
Sbjct: 46 MRDPNTKRSRGFGFVTYATVEEVDAAMNARPHKVDGRVVE-----PERAVSREDSHSLTV 100
Query: 58 KIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAK 117
KIFVGGI E +D+ Q+G ++ +IM D + + RGF F+TFD +VD ++ +
Sbjct: 101 KIFVGGIKEDTEEHYLRDYSEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDYDSVDKIVIR 160
Query: 118 GNKLELAGAQVEVKKAEPKKPNLPQPSYRR 147
K V+KA K+ S +R
Sbjct: 161 --KYHTVNDHNCVRKALSKQEMASASSSQR 188
Score = 142 (55.0 bits), Expect = 1.4e-09, P = 1.4e-09
Identities = 29/78 (37%), Positives = 50/78 (64%)
Query: 57 KKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLL- 115
+K+F+GG+ ++ + F Q+G + E +MRD +T RSRGFGF+T+ T + VD +
Sbjct: 14 RKLFIGGLTFETTDESLRSHFEQWGTLTECVVMRDPNTKRSRGFGFVTYATVEEVDAAMN 73
Query: 116 AKGNKLELAGAQVEVKKA 133
A+ +K++ G VE ++A
Sbjct: 74 ARPHKVD--GRVVEPERA 89
>UNIPROTKB|F1M6S2 [details] [associations]
symbol:F1M6S2 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 IPI:IPI00782238
ProteinModelPortal:F1M6S2 Ensembl:ENSRNOT00000030712 Uniprot:F1M6S2
Length = 223
Score = 202 (76.2 bits), Expect = 2.9e-16, P = 2.9e-16
Identities = 48/141 (34%), Positives = 73/141 (51%)
Query: 1 MKDRKTGQPRGFGFV-TYADPSVVDKVI-EDTHIINGKQVEIKRTIPK--GAVGSKDFKT 56
M+D + + R FGFV TY+ VD + H ++G VE KR + +
Sbjct: 49 MRDLQIKRSRSFGFVSTYSCVKEVDAAMCARPHKVDGHVVEPKRAVSREDSVKPGAHLTV 108
Query: 57 KKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLA 116
KKIFVGGI E +D+F ++G ++ ++M D + + RGF F+TFD VD ++
Sbjct: 109 KKIFVGGIKEDTEEYNLRDYFEKYGKIEIIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVQ 168
Query: 117 KGNKLELAGAQVEVKKAEPKK 137
K + + G EVKKA K+
Sbjct: 169 KYHTIN--GHNYEVKKAVSKQ 187
>UNIPROTKB|B1AKP7 [details] [associations]
symbol:TARDBP "TAR DNA-binding protein 43" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AL109811
HOGENOM:HOG000254792 HOVERGEN:HBG058671 UniGene:Hs.300624
HGNC:HGNC:11571 ChiTaRS:TARDBP IPI:IPI00639819 SMR:B1AKP7
Ensembl:ENST00000315091 Uniprot:B1AKP7
Length = 295
Score = 199 (75.1 bits), Expect = 6.0e-16, P = 6.0e-16
Identities = 46/136 (33%), Positives = 70/136 (51%)
Query: 2 KDRKTGQPRGFGFVTYADPSVVDKVIEDTHIINGKQVEIKRTIPKGAVGSKD-FKTKKIF 60
KD KTG +GFGFV + + KV+ H+I+G+ + K +P + +++K+F
Sbjct: 137 KDLKTGHSKGFGFVRFTEYETQVKVMSQRHMIDGRWCDCK--LPNSKQSQDEPLRSRKVF 194
Query: 61 VGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNK 120
VG + EDE ++FF Q+GDV + I + R F F+TF +Q L G
Sbjct: 195 VGRCTEDMTEDELREFFSQYGDVMDVFIPKPF-----RAFAFVTFADDQIAQSLC--GED 247
Query: 121 LELAGAQVEVKKAEPK 136
L + G V + AEPK
Sbjct: 248 LIIKGISVHISNAEPK 263
Score = 111 (44.1 bits), Expect = 0.00018, P = 0.00018
Identities = 22/54 (40%), Positives = 32/54 (59%)
Query: 55 KTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTE 108
KT + V G+P E + K++F FG+V Q+ +D T S+GFGF+ F TE
Sbjct: 102 KTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRF-TE 154
>UNIPROTKB|G3V162 [details] [associations]
symbol:TARDBP "TAR DNA-binding protein 43" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 EMBL:CH471130 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AL109811 UniGene:Hs.300624 HGNC:HGNC:11571 ChiTaRS:TARDBP
ProteinModelPortal:G3V162 SMR:G3V162 PRIDE:G3V162
Ensembl:ENST00000473869 ArrayExpress:G3V162 Bgee:G3V162
Uniprot:G3V162
Length = 298
Score = 199 (75.1 bits), Expect = 6.0e-16, P = 6.0e-16
Identities = 46/136 (33%), Positives = 70/136 (51%)
Query: 2 KDRKTGQPRGFGFVTYADPSVVDKVIEDTHIINGKQVEIKRTIPKGAVGSKD-FKTKKIF 60
KD KTG +GFGFV + + KV+ H+I+G+ + K +P + +++K+F
Sbjct: 137 KDLKTGHSKGFGFVRFTEYETQVKVMSQRHMIDGRWCDCK--LPNSKQSQDEPLRSRKVF 194
Query: 61 VGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNK 120
VG + EDE ++FF Q+GDV + I + R F F+TF +Q L G
Sbjct: 195 VGRCTEDMTEDELREFFSQYGDVMDVFIPKPF-----RAFAFVTFADDQIAQSLC--GED 247
Query: 121 LELAGAQVEVKKAEPK 136
L + G V + AEPK
Sbjct: 248 LIIKGISVHISNAEPK 263
Score = 111 (44.1 bits), Expect = 0.00018, P = 0.00018
Identities = 22/54 (40%), Positives = 32/54 (59%)
Query: 55 KTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTE 108
KT + V G+P E + K++F FG+V Q+ +D T S+GFGF+ F TE
Sbjct: 102 KTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRF-TE 154
>UNIPROTKB|B4DJ45 [details] [associations]
symbol:TARDBP "cDNA FLJ58188, highly similar to TAR
DNA-binding protein 43" species:9606 "Homo sapiens" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IDA] [GO:0005730
"nucleolus" evidence=IDA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0000166 GO:GO:0003677 Gene3D:3.30.70.330 EMBL:AL109811
HOGENOM:HOG000254792 HOVERGEN:HBG058671 UniGene:Hs.300624
HGNC:HGNC:11571 ChiTaRS:TARDBP EMBL:AK295920 IPI:IPI00910355
SMR:B4DJ45 STRING:B4DJ45 Ensembl:ENST00000439080 UCSC:uc010oap.2
Uniprot:B4DJ45
Length = 298
Score = 199 (75.1 bits), Expect = 6.0e-16, P = 6.0e-16
Identities = 46/136 (33%), Positives = 70/136 (51%)
Query: 2 KDRKTGQPRGFGFVTYADPSVVDKVIEDTHIINGKQVEIKRTIPKGAVGSKD-FKTKKIF 60
KD KTG +GFGFV + + KV+ H+I+G+ + K +P + +++K+F
Sbjct: 21 KDLKTGHSKGFGFVRFTEYETQVKVMSQRHMIDGRWCDCK--LPNSKQSQDEPLRSRKVF 78
Query: 61 VGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNK 120
VG + EDE ++FF Q+GDV + I + R F F+TF +Q L G
Sbjct: 79 VGRCTEDMTEDELREFFSQYGDVMDVFIPKPF-----RAFAFVTFADDQIAQSLC--GED 131
Query: 121 LELAGAQVEVKKAEPK 136
L + G V + AEPK
Sbjct: 132 LIIKGISVHISNAEPK 147
>ZFIN|ZDB-GENE-030131-3777 [details] [associations]
symbol:tardbp "TAR DNA binding protein"
species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0007626 "locomotory behavior" evidence=IMP] [GO:0048675 "axon
extension" evidence=IMP] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-030131-3777 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0007626 GO:GO:0003676 GO:GO:0048675 HSSP:Q14103 CTD:23435
eggNOG:NOG145464 HOGENOM:HOG000254792 HOVERGEN:HBG058671
OrthoDB:EOG447FTT GeneTree:ENSGT00570000079202 EMBL:BX663614
EMBL:BC049348 IPI:IPI00495103 RefSeq:NP_958884.1 UniGene:Dr.2409
SMR:Q802C7 STRING:Q802C7 Ensembl:ENSDART00000058555 GeneID:325052
KEGG:dre:325052 InParanoid:Q802C7 NextBio:20809098 Uniprot:Q802C7
Length = 412
Score = 204 (76.9 bits), Expect = 7.2e-16, P = 7.2e-16
Identities = 51/152 (33%), Positives = 76/152 (50%)
Query: 2 KDRKTGQPRGFGFVTYADPSVVDKVIEDTHIINGKQVEIKRTIPKGAVG-SKDFKTKKIF 60
+D KTG +GFGFV + D KV+ H+I+G+ + K +P G + +++K+F
Sbjct: 143 RDVKTGNSKGFGFVRFGDWETQSKVMTQRHMIDGRWCDCK--LPNSKQGIDEPMRSRKVF 200
Query: 61 VGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNK 120
VG + DE + FFMQ+G+V + I + R F F+TF +Q L G
Sbjct: 201 VGRCTEDMTADELRQFFMQYGEVTDVFIPKPF-----RAFAFVTFADDQVAAALC--GED 253
Query: 121 LELAGAQVEVKKAEPKKPNLPQPSYR--RYNN 150
L + G V + AEPK N Q R R+ N
Sbjct: 254 LIIKGVSVHISNAEPKHNNTRQMMERAGRFGN 285
Score = 119 (46.9 bits), Expect = 2.9e-05, P = 2.9e-05
Identities = 28/95 (29%), Positives = 48/95 (50%)
Query: 53 DFKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVD 112
D KT + V G+P +E + KD+F FG+V Q+ RD T S+GFGF+ F +
Sbjct: 106 DQKTSDLIVLGLPWKTSEQDLKDYFGTFGEVIMVQVKRDVKTGNSKGFGFVRFGDWETQS 165
Query: 113 DLLAKGNKLELAGAQVEVKKAEPKKPNLPQPSYRR 147
++ + + ++ G + K K+ + +P R
Sbjct: 166 KVMTQRHMID--GRWCDCKLPNSKQ-GIDEPMRSR 197
>UNIPROTKB|K7EJ88 [details] [associations]
symbol:DAZAP1 "DAZ-associated protein 1" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
Gene3D:3.30.70.330 HGNC:HGNC:2683 EMBL:AC005329 EMBL:AC027307
Ensembl:ENST00000591830 Uniprot:K7EJ88
Length = 321
Score = 196 (74.1 bits), Expect = 2.1e-15, P = 2.1e-15
Identities = 53/150 (35%), Positives = 82/150 (54%)
Query: 19 DPSVVDKVIEDT-HIINGKQVEIKRTIPKGAV--------G------SKDFKTKKIFVGG 63
DP+ V V+ H ++G+ ++ K P+G G S + K+ KIFVGG
Sbjct: 3 DPNCVGTVLASRPHTLDGRNIDPKPCTPRGMQPERTRPKEGWQKGPRSDNSKSNKIFVGG 62
Query: 64 IPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLEL 123
IP + E E +++F +FG V E ++ D R RGFGFITF+ EQ+VD + + ++
Sbjct: 63 IPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVNM-HFHDI 121
Query: 124 AGAQVEVKKAEPK--KPNLP-QPSYRRYNN 150
G +VEVK+AEP+ K P QP ++ +
Sbjct: 122 MGKKVEVKRAEPRDSKSQAPGQPGASQWGS 151
>UNIPROTKB|E2RJS6 [details] [associations]
symbol:E2RJS6 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR021662
Pfam:PF11627 GeneTree:ENSGT00550000074566 EMBL:AAEX03015762
Ensembl:ENSCAFT00000024318 Uniprot:E2RJS6
Length = 316
Score = 195 (73.7 bits), Expect = 2.4e-15, P = 2.4e-15
Identities = 48/136 (35%), Positives = 74/136 (54%)
Query: 1 MKDRKTGQPRGFGFVTYADPSVVDKVIEDT-HIINGKQVEIKRTIPK-GAVGSKDFKT-K 57
M+D T + RGFGFV +A VD + + +NG+ +E KR + + + + T K
Sbjct: 46 MRDPNTKRSRGFGFVMFATVEEVDAAMNARPNKVNGRVLEPKRFVSREDSQRPAAYLTVK 105
Query: 58 KIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAK 117
KIFVGGI E E D+F Q+G + ++M D + + RGF F+TFD +VD ++ +
Sbjct: 106 KIFVGGIKEDTEEHE--DYFEQYGKFEVIEVMTDQGSGKKRGFAFVTFDNHDSVDQIVIQ 163
Query: 118 GNKLELAGAQVEVKKA 133
+ G EV+KA
Sbjct: 164 KYHT-VNGHSCEVRKA 178
Score = 122 (48.0 bits), Expect = 6.7e-06, P = 6.7e-06
Identities = 27/76 (35%), Positives = 44/76 (57%)
Query: 58 KIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLL-A 116
K+F+ G+ ++ + F Q+G + +MRD +T RSRGFGF+ F T + VD + A
Sbjct: 15 KLFIRGLSFETTDESLRSHFEQWGTLTGCVVMRDPNTKRSRGFGFVMFATVEEVDAAMNA 74
Query: 117 KGNKLELAGAQVEVKK 132
+ NK+ G +E K+
Sbjct: 75 RPNKVN--GRVLEPKR 88
>UNIPROTKB|Q13148 [details] [associations]
symbol:TARDBP "TAR DNA-binding protein 43" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0008219 "cell
death" evidence=IEA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=TAS] [GO:0006366 "transcription from RNA
polymerase II promoter" evidence=TAS] [GO:0005634 "nucleus"
evidence=IDA] [GO:0008380 "RNA splicing" evidence=IDA] [GO:0043922
"negative regulation by host of viral transcription" evidence=IDA]
[GO:0003690 "double-stranded DNA binding" evidence=IDA] [GO:0003723
"RNA binding" evidence=IDA] [GO:0003730 "mRNA 3'-UTR binding"
evidence=IDA] [GO:0070935 "3'-UTR-mediated mRNA stabilization"
evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0008380 GO:GO:0000166
GO:GO:0008219 EMBL:CH471130 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0003700 GO:GO:0006366 GO:GO:0003730 GO:GO:0003690
Orphanet:803 eggNOG:COG0724 GO:GO:0043922 Orphanet:275872
GO:GO:0070935 EMBL:AL109811 CTD:23435 HOVERGEN:HBG058671
OrthoDB:EOG447FTT EMBL:U23731 EMBL:EF434181 EMBL:EF434182
EMBL:EF434183 EMBL:AK312416 EMBL:CR533534 EMBL:AK222754
EMBL:AL050265 EMBL:BC071657 EMBL:BC095435 IPI:IPI00025815
IPI:IPI00844544 IPI:IPI00971018 PIR:I38977 RefSeq:NP_031401.1
UniGene:Hs.300624 PDB:1WF0 PDB:2CQG PDBsum:1WF0 PDBsum:2CQG
ProteinModelPortal:Q13148 SMR:Q13148 DIP:DIP-31167N IntAct:Q13148
STRING:Q13148 PhosphoSite:Q13148 DMDM:20140568 PaxDb:Q13148
PRIDE:Q13148 DNASU:23435 Ensembl:ENST00000240185 GeneID:23435
KEGG:hsa:23435 UCSC:uc001art.3 GeneCards:GC01P011006
HGNC:HGNC:11571 HPA:CAB003703 HPA:HPA017284 MIM:605078 MIM:612069
neXtProt:NX_Q13148 PharmGKB:PA36336 InParanoid:Q13148 OMA:QFFSQYG
PhylomeDB:Q13148 ChiTaRS:TARDBP EvolutionaryTrace:Q13148
GenomeRNAi:23435 NextBio:45695 ArrayExpress:Q13148 Bgee:Q13148
CleanEx:HS_TARDBP Genevestigator:Q13148 GermOnline:ENSG00000120948
Uniprot:Q13148
Length = 414
Score = 199 (75.1 bits), Expect = 2.6e-15, P = 2.6e-15
Identities = 46/136 (33%), Positives = 70/136 (51%)
Query: 2 KDRKTGQPRGFGFVTYADPSVVDKVIEDTHIINGKQVEIKRTIPKGAVGSKD-FKTKKIF 60
KD KTG +GFGFV + + KV+ H+I+G+ + K +P + +++K+F
Sbjct: 137 KDLKTGHSKGFGFVRFTEYETQVKVMSQRHMIDGRWCDCK--LPNSKQSQDEPLRSRKVF 194
Query: 61 VGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNK 120
VG + EDE ++FF Q+GDV + I + R F F+TF +Q L G
Sbjct: 195 VGRCTEDMTEDELREFFSQYGDVMDVFIPKPF-----RAFAFVTFADDQIAQSLC--GED 247
Query: 121 LELAGAQVEVKKAEPK 136
L + G V + AEPK
Sbjct: 248 LIIKGISVHISNAEPK 263
Score = 111 (44.1 bits), Expect = 0.00032, P = 0.00032
Identities = 22/54 (40%), Positives = 32/54 (59%)
Query: 55 KTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTE 108
KT + V G+P E + K++F FG+V Q+ +D T S+GFGF+ F TE
Sbjct: 102 KTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRF-TE 154
>UNIPROTKB|F1M5L3 [details] [associations]
symbol:F1M5L3 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC128353
EMBL:AC111733 IPI:IPI00358908 Ensembl:ENSRNOT00000041535
Uniprot:F1M5L3
Length = 364
Score = 178 (67.7 bits), Expect = 3.2e-15, Sum P(2) = 3.2e-15
Identities = 46/140 (32%), Positives = 70/140 (50%)
Query: 1 MKDRKTGQPRGFGFVTYADPSVVDKVI-EDTHIINGKQVEIKRTIPK--GAVGSKDFKTK 57
M+D +T RGFGFVT + VD + H ++G+ VE KR + + K
Sbjct: 68 MRDPQTKHSRGFGFVTSSCVEEVDAAMCARPHKVDGRVVEPKRAVSREDSVKPGAHLMVK 127
Query: 58 KIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAK 117
KIFVGGI E +D+F ++G + I + RGF F+TFD + VD ++ +
Sbjct: 128 KIFVGGIKEDTEEYNLRDYFEKYGKTET--IEGRQAEWEKRGFAFVTFDDQDTVDKIVVQ 185
Query: 118 GNKLELAGAQVEVKKAEPKK 137
+ + G EVK+A K+
Sbjct: 186 KHHT-INGHNCEVKRALSKQ 204
Score = 127 (49.8 bits), Expect = 1.3e-07, Sum P(2) = 1.3e-07
Identities = 27/85 (31%), Positives = 50/85 (58%)
Query: 57 KKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLL- 115
+K+F+GG+ +D ++ F + G + + +MRD T SRGFGF+T + VD +
Sbjct: 36 RKLFIGGLSFETTDDSLREHFEKRGTLTDCVVMRDPQTKHSRGFGFVTSSCVEEVDAAMC 95
Query: 116 AKGNKLELAGAQVEVKKAEPKKPNL 140
A+ +K++ G VE K+A ++ ++
Sbjct: 96 ARPHKVD--GRVVEPKRAVSREDSV 118
Score = 38 (18.4 bits), Expect = 3.2e-15, Sum P(2) = 3.2e-15
Identities = 8/18 (44%), Positives = 9/18 (50%)
Query: 231 GYSGRYGGFNRGYDVTGD 248
GY G GG Y +GD
Sbjct: 234 GYGGGGGGSRGSYGGSGD 251
>UNIPROTKB|F1LZZ2 [details] [associations]
symbol:F1LZZ2 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104376 IPI:IPI00556964
Ensembl:ENSRNOT00000044311 OMA:KERREDT Uniprot:F1LZZ2
Length = 294
Score = 192 (72.6 bits), Expect = 3.3e-15, P = 3.3e-15
Identities = 45/137 (32%), Positives = 70/137 (51%)
Query: 1 MKDRKTGQPRGFGFVTYADPSVVDKVI-EDTHIINGKQVEIKRTIPK--GAVGSKDFKTK 57
M+D + RGF FVTY+ V V+ H + G VE KR + + + +
Sbjct: 69 MRDPQRKCSRGFSFVTYSCVEEVGAVMCARPHKVVGCVVEPKRAVSREDSIIPGAHLMVE 128
Query: 58 KIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAK 117
KIFVGGI E +D+F ++G ++ ++M D + + RGF F+TFD VD ++ K
Sbjct: 129 KIFVGGIKEDTEEYNLRDYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDNHDTVDKVVQK 188
Query: 118 GNKLELAGAQVEVKKAE 134
+ + G EVK+ E
Sbjct: 189 YHTVN--GHNCEVKEQE 203
Score = 113 (44.8 bits), Expect = 9.5e-05, P = 9.5e-05
Identities = 28/110 (25%), Positives = 59/110 (53%)
Query: 35 GKQVEIKRTIPKGAVG---SKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRD 91
G++ E +R +G G + + +K+F+GG+ + ++ F ++G + + +MRD
Sbjct: 12 GREGERERERGRGMEGHDPKEPEQLRKLFIGGLSFETTDGSLREHFEKWGTLTDCVVMRD 71
Query: 92 HSTSRSRGFGFITFDTEQAVDDLL-AKGNKLELAGAQVEVKKAEPKKPNL 140
SRGF F+T+ + V ++ A+ +K+ G VE K+A ++ ++
Sbjct: 72 PQRKCSRGFSFVTYSCVEEVGAVMCARPHKV--VGCVVEPKRAVSREDSI 119
>UNIPROTKB|F1M117 [details] [associations]
symbol:F1M117 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC128353
EMBL:AC111733 IPI:IPI00558412 Ensembl:ENSRNOT00000023321
Uniprot:F1M117
Length = 366
Score = 178 (67.7 bits), Expect = 3.3e-15, Sum P(2) = 3.3e-15
Identities = 46/140 (32%), Positives = 70/140 (50%)
Query: 1 MKDRKTGQPRGFGFVTYADPSVVDKVI-EDTHIINGKQVEIKRTIPK--GAVGSKDFKTK 57
M+D +T RGFGFVT + VD + H ++G+ VE KR + + K
Sbjct: 68 MRDPQTKHSRGFGFVTSSCVEEVDAAMCARPHKVDGRVVEPKRAVSREDSVKPGAHLMVK 127
Query: 58 KIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAK 117
KIFVGGI E +D+F ++G + I + RGF F+TFD + VD ++ +
Sbjct: 128 KIFVGGIKEDTEEYNLRDYFEKYGKTET--IEGRQAEWEKRGFAFVTFDDQDTVDKIVVQ 185
Query: 118 GNKLELAGAQVEVKKAEPKK 137
+ + G EVK+A K+
Sbjct: 186 KHHT-INGHNCEVKRALSKQ 204
Score = 127 (49.8 bits), Expect = 1.3e-07, Sum P(2) = 1.3e-07
Identities = 27/85 (31%), Positives = 50/85 (58%)
Query: 57 KKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLL- 115
+K+F+GG+ +D ++ F + G + + +MRD T SRGFGF+T + VD +
Sbjct: 36 RKLFIGGLSFETTDDSLREHFEKRGTLTDCVVMRDPQTKHSRGFGFVTSSCVEEVDAAMC 95
Query: 116 AKGNKLELAGAQVEVKKAEPKKPNL 140
A+ +K++ G VE K+A ++ ++
Sbjct: 96 ARPHKVD--GRVVEPKRAVSREDSV 118
Score = 38 (18.4 bits), Expect = 3.3e-15, Sum P(2) = 3.3e-15
Identities = 8/18 (44%), Positives = 9/18 (50%)
Query: 231 GYSGRYGGFNRGYDVTGD 248
GY G GG Y +GD
Sbjct: 234 GYGGGGGGSRGSYGGSGD 251
>UNIPROTKB|F5H6R6 [details] [associations]
symbol:HNRNPD "Heterogeneous nuclear ribonucleoprotein D0"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0043488 "regulation of mRNA stability" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005829 GO:GO:0005634
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0048255
EMBL:AC124016 HGNC:HGNC:5036 ChiTaRS:HNRNPD IPI:IPI01012829
ProteinModelPortal:F5H6R6 SMR:F5H6R6 Ensembl:ENST00000541060
ArrayExpress:F5H6R6 Bgee:F5H6R6 Uniprot:F5H6R6
Length = 201
Score = 157 (60.3 bits), Expect = 3.5e-15, Sum P(2) = 3.5e-15
Identities = 38/108 (35%), Positives = 64/108 (59%)
Query: 31 HIINGKQVEIKRTIPKGAVGSKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMR 90
H +NGK ++ KR A+ +K+ KKIFVGG+ E++ +++F FG+V+ ++
Sbjct: 6 HKLNGKVIDPKRA---KAMKTKE-PVKKIFVGGLSPDTPEEKIREYFGGFGEVESIELPM 61
Query: 91 DHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAG-AQVEVKKAEPKK 137
D+ T++ RGF FITF E+ V ++ K K G ++ E+K A K+
Sbjct: 62 DNKTNKRRGFCFITFKEEEPVKKIMEK--KYHNVGLSKCEIKVAMSKE 107
Score = 48 (22.0 bits), Expect = 3.5e-15, Sum P(2) = 3.5e-15
Identities = 10/18 (55%), Positives = 13/18 (72%)
Query: 231 GYSGR-YGGFNRGYDVTG 247
GY+ + YGG+ GYD TG
Sbjct: 152 GYNSQGYGGYG-GYDYTG 168
>UNIPROTKB|F1RVC9 [details] [associations]
symbol:HNRNPD "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0043488 "regulation of mRNA stability" evidence=IEA]
[GO:0042162 "telomeric DNA binding" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0030529 GO:GO:0043488 GO:GO:0042162
GeneTree:ENSGT00700000104347 EMBL:CU627987
Ensembl:ENSSSCT00000010129 OMA:DASSHGW Uniprot:F1RVC9
Length = 202
Score = 157 (60.3 bits), Expect = 5.7e-15, Sum P(2) = 5.7e-15
Identities = 38/108 (35%), Positives = 64/108 (59%)
Query: 31 HIINGKQVEIKRTIPKGAVGSKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMR 90
H +NGK ++ KR A+ +K+ KKIFVGG+ E++ +++F FG+V+ ++
Sbjct: 7 HKLNGKVIDPKRA---KAMKTKE-PVKKIFVGGLSPDTPEEKIREYFGGFGEVESIELPM 62
Query: 91 DHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAG-AQVEVKKAEPKK 137
D+ T++ RGF FITF E+ V ++ K K G ++ E+K A K+
Sbjct: 63 DNKTNKRRGFCFITFKEEEPVKKIMEK--KYHNVGLSKCEIKVAMSKE 108
Score = 46 (21.3 bits), Expect = 5.7e-15, Sum P(2) = 5.7e-15
Identities = 11/18 (61%), Positives = 12/18 (66%)
Query: 231 GY-SGRYGGFNRGYDVTG 247
GY S YGG+ GYD TG
Sbjct: 153 GYNSPGYGGYG-GYDYTG 169
>TAIR|locus:2157702 [details] [associations]
symbol:CP31B "chloroplast RNA-binding protein 31B"
species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS] [GO:0009507
"chloroplast" evidence=ISM;IDA] [GO:0009941 "chloroplast envelope"
evidence=IDA] [GO:0045087 "innate immune response" evidence=IDA]
[GO:0008266 "poly(U) RNA binding" evidence=IDA] [GO:0009570
"chloroplast stroma" evidence=IDA] [GO:0009451 "RNA modification"
evidence=IMP] [GO:0000023 "maltose metabolic process" evidence=RCA]
[GO:0006098 "pentose-phosphate shunt" evidence=RCA] [GO:0009409
"response to cold" evidence=RCA] [GO:0009697 "salicylic acid
biosynthetic process" evidence=RCA] [GO:0009814 "defense response,
incompatible interaction" evidence=RCA] [GO:0010027 "thylakoid
membrane organization" evidence=RCA] [GO:0019252 "starch
biosynthetic process" evidence=RCA] [GO:0019288 "isopentenyl
diphosphate biosynthetic process, mevalonate-independent pathway"
evidence=RCA] [GO:0019684 "photosynthesis, light reaction"
evidence=RCA] [GO:0042742 "defense response to bacterium"
evidence=RCA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 EMBL:CP002688
GenomeReviews:BA000015_GR GO:GO:0009570 GO:GO:0008266 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0045087 GO:GO:0009941 EMBL:AB024031
eggNOG:COG0724 GO:GO:0009451 HOGENOM:HOG000276232 HSSP:P11940
ProtClustDB:CLSN2915857 UniGene:At.46085 UniGene:At.7917
EMBL:AY039868 EMBL:AY077660 IPI:IPI00537317 RefSeq:NP_199836.1
ProteinModelPortal:Q9FGS0 SMR:Q9FGS0 STRING:Q9FGS0 PaxDb:Q9FGS0
PRIDE:Q9FGS0 EnsemblPlants:AT5G50250.1 GeneID:835090
KEGG:ath:AT5G50250 TAIR:At5g50250 InParanoid:Q9FGS0 OMA:AAFRIYV
PhylomeDB:Q9FGS0 Genevestigator:Q9FGS0 Uniprot:Q9FGS0
Length = 289
Score = 189 (71.6 bits), Expect = 6.9e-15, P = 6.9e-15
Identities = 42/140 (30%), Positives = 74/140 (52%)
Query: 3 DRKTGQPRGFGFVTYADPSVVDKVIE--DTHIINGKQVEIKRTIPKGAVGSKDFKTK--- 57
+R T Q RGFGFVT + +K +E ++ +NG+++ + R P+G+ + +
Sbjct: 147 NRDTDQSRGFGFVTMSTVEEAEKAVEKFNSFEVNGRRLTVNRAAPRGSRPERQPRVYDAA 206
Query: 58 -KIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLA 116
+I+VG +P V+ + F + G V + +++ D T RSRGFGF+ E V+ +A
Sbjct: 207 FRIYVGNLPWDVDSGRLERLFSEHGKVVDARVVSDRETGRSRGFGFVQMSNENEVNVAIA 266
Query: 117 KGNKLELAGAQVEVKKAEPK 136
+ L G ++V AE +
Sbjct: 267 ALDGQNLEGRAIKVNVAEER 286
Score = 138 (53.6 bits), Expect = 5.3e-09, P = 5.3e-09
Identities = 29/92 (31%), Positives = 49/92 (53%)
Query: 58 KIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAK 117
K+FVG +P V+ F Q G V+ +++ + T +SRGFGF+T T + + + K
Sbjct: 114 KLFVGNLPYDVDSQALAMLFEQAGTVEISEVIYNRDTDQSRGFGFVTMSTVEEAEKAVEK 173
Query: 118 GNKLELAGAQVEVKKAEPKKPNLPQPSYRRYN 149
N E+ G ++ V +A P+ P+ R Y+
Sbjct: 174 FNSFEVNGRRLTVNRAAPRGSR-PERQPRVYD 204
>UNIPROTKB|D4A6Z0 [details] [associations]
symbol:D4A6Z0 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 IPI:IPI00948011
ProteinModelPortal:D4A6Z0 Ensembl:ENSRNOT00000067831 Uniprot:D4A6Z0
Length = 176
Score = 189 (71.6 bits), Expect = 6.9e-15, P = 6.9e-15
Identities = 42/121 (34%), Positives = 66/121 (54%)
Query: 1 MKDRKTGQPRGFGFVTYADPSVVDKVI-EDTHIINGKQVEIKRTIPK--GAVGSKDFKTK 57
M+D +T + RGFGFV Y+ VD + H ++G VE KR I + K
Sbjct: 44 MRDPQTERSRGFGFV-YSCVEEVDAAMCARPHKVDGHVVEPKRAISREDSVKPGAHLMVK 102
Query: 58 KIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAK 117
KIFVGGI E +D+F ++G+++ +++ D + + RGF F+TFD VD ++ +
Sbjct: 103 KIFVGGIKEDTEEYNLRDYF-EYGNIKTIEVVEDRQSGKKRGFAFLTFDDHDTVDKIVGR 161
Query: 118 G 118
G
Sbjct: 162 G 162
Score = 113 (44.8 bits), Expect = 1.5e-05, P = 1.5e-05
Identities = 25/77 (32%), Positives = 45/77 (58%)
Query: 57 KKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLA 116
+K+F+GG+ +D ++ F ++ + + +MRD T RSRGFGF+ E+ + A
Sbjct: 13 RKLFIGGLSFETTDDSLREHF-KWDTLTDCVVMRDPQTERSRGFGFVYSCVEEVDAAMCA 71
Query: 117 KGNKLELAGAQVEVKKA 133
+ +K++ G VE K+A
Sbjct: 72 RPHKVD--GHVVEPKRA 86
>ZFIN|ZDB-GENE-031030-1 [details] [associations]
symbol:tardbpl "TAR DNA binding protein, like"
species:7955 "Danio rerio" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-031030-1 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 HSSP:Q14103 HOGENOM:HOG000254792
HOVERGEN:HBG058671 GeneTree:ENSGT00570000079202 OMA:PSISRIF
EMBL:CR381616 EMBL:BC044405 IPI:IPI00504192 RefSeq:NP_938178.1
UniGene:Dr.33664 SMR:Q803N5 STRING:Q803N5
Ensembl:ENSDART00000027255 GeneID:386630 KEGG:dre:386630 CTD:386630
InParanoid:Q803N5 NextBio:20813960 Uniprot:Q803N5
Length = 303
Score = 190 (71.9 bits), Expect = 7.3e-15, P = 7.3e-15
Identities = 46/143 (32%), Positives = 71/143 (49%)
Query: 2 KDRKTGQPRGFGFVTYADPSVVDKVIEDTHIINGKQVEIKRTIPK----GAVGSKDFKTK 57
+D K+G +GFGFV + D KV+ H+I+G+ + K K A + +++
Sbjct: 138 RDAKSGNSKGFGFVRFTDYETQIKVMSQRHMIDGRWCDCKLPNSKYFLEQAGPDEPMRSR 197
Query: 58 KIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAK 117
K+FVG + DE + FFMQ+G+V + I + R F F+TF +Q L
Sbjct: 198 KVFVGRCTEDMTADELRQFFMQYGEVTDVFIPKPF-----RAFAFVTFADDQVAQSLC-- 250
Query: 118 GNKLELAGAQVEVKKAEPKKPNL 140
G L + G V + AEPK N+
Sbjct: 251 GEDLIIKGTSVHISNAEPKHNNI 273
Score = 112 (44.5 bits), Expect = 0.00014, P = 0.00014
Identities = 23/58 (39%), Positives = 33/58 (56%)
Query: 55 KTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITF-DTEQAV 111
KT + V G+P E + KD+F FG+V Q+ RD + S+GFGF+ F D E +
Sbjct: 103 KTSDLIVLGLPWKTTEQDLKDYFGTFGEVIMVQVKRDAKSGNSKGFGFVRFTDYETQI 160
>MGI|MGI:109157 [details] [associations]
symbol:Elavl3 "ELAV (embryonic lethal, abnormal vision,
Drosophila)-like 3 (Hu antigen C)" species:10090 "Mus musculus"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0007275 "multicellular organismal development" evidence=IEA]
[GO:0007399 "nervous system development" evidence=IEA] [GO:0017091
"AU-rich element binding" evidence=ISO;IDA] [GO:0030154 "cell
differentiation" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
MGI:MGI:109157 GO:GO:0007399 GO:GO:0030154 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0017091 eggNOG:COG0724 HOVERGEN:HBG002295
HOGENOM:HOG000231162 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 KO:K13208 CTD:1995 OMA:ARRYTGP
ChiTaRS:ELAVL3 EMBL:U29148 EMBL:U29149 EMBL:BC052097
IPI:IPI00122451 IPI:IPI00222990 RefSeq:NP_034617.1
UniGene:Mm.390167 PDB:1D8Z PDB:1D9A PDB:1FNX PDBsum:1D8Z
PDBsum:1D9A PDBsum:1FNX ProteinModelPortal:Q60900 SMR:Q60900
STRING:Q60900 PhosphoSite:Q60900 PaxDb:Q60900 PRIDE:Q60900
Ensembl:ENSMUST00000003501 GeneID:15571 KEGG:mmu:15571
UCSC:uc009onl.2 UCSC:uc009onn.1 InParanoid:Q60900 OrthoDB:EOG43R3N0
EvolutionaryTrace:Q60900 NextBio:288556 Bgee:Q60900
Genevestigator:Q60900 GermOnline:ENSMUSG00000003410 Uniprot:Q60900
Length = 367
Score = 192 (72.6 bits), Expect = 1.1e-14, P = 1.1e-14
Identities = 53/164 (32%), Positives = 84/164 (51%)
Query: 1 MKDRKTGQPRGFGFVTYADPSVVDKVIEDTHIINGKQVEIKRT-IPKGAVGSKDFKTKKI 59
++D+ TGQ G+GFV Y+DP+ DK I + +NG +++ K + S + +
Sbjct: 71 VRDKITGQSLGYGFVNYSDPNDADKAI---NTLNGLKLQTKTIKVSYARPSSASIRDANL 127
Query: 60 FVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFD----TEQAVDDLL 115
+V G+P ++++ E + F Q+G + +I+ D +T SRG GFI FD E+A+ L
Sbjct: 128 YVSGLPKTMSQKEMEQLFSQYGRIITSRILLDQATGVSRGVGFIRFDKRIEAEEAIKGL- 186
Query: 116 AKGNKLELAGAQVEVKKAE-PKKP-------NLPQPSYRRYNNP 151
G K A + VK A P + +L Q S RRY P
Sbjct: 187 -NGQKPLGAAEPITVKFANNPSQKTGQALLTHLYQSSARRYAGP 229
Score = 134 (52.2 bits), Expect = 2.6e-08, P = 2.6e-08
Identities = 26/94 (27%), Positives = 47/94 (50%)
Query: 47 GAVGSKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFD 106
G G+ D + V +P ++ +DEFK F GD++ +++RD T +S G+GF+ +
Sbjct: 29 GTNGATDDSKTNLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYS 88
Query: 107 TEQAVDDLLAKGNKLELAGAQVEVKKAEPKKPNL 140
D + N L+L ++V A P ++
Sbjct: 89 DPNDADKAINTLNGLKLQTKTIKVSYARPSSASI 122
>RGD|628892 [details] [associations]
symbol:Elavl3 "ELAV (embryonic lethal, abnormal vision,
Drosophila)-like 3 (Hu antigen C)" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0017091 "AU-rich element binding" evidence=IEA;ISO]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 RGD:628892 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0017091 HSSP:P19339 eggNOG:COG0724 EMBL:CH473993
HOVERGEN:HBG002295 HOGENOM:HOG000231162 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 KO:K13208 CTD:1995 OrthoDB:EOG43R3N0
EMBL:AB097198 IPI:IPI00192527 RefSeq:NP_758827.1 UniGene:Rn.22586
SMR:Q76IJ9 STRING:Q76IJ9 Ensembl:ENSRNOT00000018416 GeneID:282824
KEGG:rno:282824 UCSC:RGD:628892 InParanoid:Q76IJ9 NextBio:624869
Genevestigator:Q76IJ9 Uniprot:Q76IJ9
Length = 367
Score = 192 (72.6 bits), Expect = 1.1e-14, P = 1.1e-14
Identities = 53/164 (32%), Positives = 84/164 (51%)
Query: 1 MKDRKTGQPRGFGFVTYADPSVVDKVIEDTHIINGKQVEIKRT-IPKGAVGSKDFKTKKI 59
++D+ TGQ G+GFV Y+DP+ DK I + +NG +++ K + S + +
Sbjct: 71 VRDKITGQSLGYGFVNYSDPNDADKAI---NTLNGLKLQTKTIKVSYARPSSASIRDANL 127
Query: 60 FVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFD----TEQAVDDLL 115
+V G+P ++++ E + F Q+G + +I+ D +T SRG GFI FD E+A+ L
Sbjct: 128 YVSGLPKTMSQKEMEQLFSQYGRIITSRILLDQATGVSRGVGFIRFDKRIEAEEAIKGL- 186
Query: 116 AKGNKLELAGAQVEVKKAE-PKKP-------NLPQPSYRRYNNP 151
G K A + VK A P + +L Q S RRY P
Sbjct: 187 -NGQKPLGAAEPITVKFANNPSQKTGQALLTHLYQSSARRYAGP 229
Score = 134 (52.2 bits), Expect = 2.6e-08, P = 2.6e-08
Identities = 26/94 (27%), Positives = 47/94 (50%)
Query: 47 GAVGSKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFD 106
G G+ D + V +P ++ +DEFK F GD++ +++RD T +S G+GF+ +
Sbjct: 29 GTNGATDDSKTNLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYS 88
Query: 107 TEQAVDDLLAKGNKLELAGAQVEVKKAEPKKPNL 140
D + N L+L ++V A P ++
Sbjct: 89 DPNDADKAINTLNGLKLQTKTIKVSYARPSSASI 122
>TAIR|locus:2136298 [details] [associations]
symbol:CCR1 "cold, circadian rhythm, and RNA binding 1"
species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISM] [GO:0009507 "chloroplast" evidence=IDA]
[GO:0005730 "nucleolus" evidence=IDA] [GO:0009409 "response to
cold" evidence=IEP] [GO:0005618 "cell wall" evidence=IDA]
[GO:0045087 "innate immune response" evidence=IDA] [GO:0005886
"plasma membrane" evidence=IDA] [GO:0009651 "response to salt
stress" evidence=IEP] [GO:0005777 "peroxisome" evidence=IDA]
[GO:0010043 "response to zinc ion" evidence=IEP] [GO:0009737
"response to abscisic acid stimulus" evidence=IDA] [GO:0005829
"cytosol" evidence=RCA] [GO:0009506 "plasmodesma" evidence=IDA]
[GO:0048046 "apoplast" evidence=IDA] [GO:0005794 "Golgi apparatus"
evidence=IDA] [GO:0007623 "circadian rhythm" evidence=RCA]
[GO:0000380 "alternative mRNA splicing, via spliceosome"
evidence=IMP] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005886 GO:GO:0009506
GO:GO:0009737 GO:GO:0005794 GO:GO:0005618 GO:GO:0009507
EMBL:CP002687 GenomeReviews:CT486007_GR GO:GO:0005730 GO:GO:0005777
GO:GO:0000166 GO:GO:0010043 GO:GO:0048046 GO:GO:0009651
GO:GO:0009409 Gene3D:3.30.70.330 GO:GO:0045087 GO:GO:0003723
EMBL:AL161594 eggNOG:COG0724 EMBL:AL050351 GO:GO:0000380
HOGENOM:HOG000276232 UniGene:At.23968 ProtClustDB:CLSN2913158
EMBL:Z14988 EMBL:L00649 EMBL:L04171 EMBL:AY034997 EMBL:AY063005
IPI:IPI00520057 IPI:IPI00526742 PIR:S30148 RefSeq:NP_195637.1
ProteinModelPortal:Q03251 SMR:Q03251 MINT:MINT-1163792
STRING:Q03251 PaxDb:Q03251 PRIDE:Q03251 ProMEX:Q03251
EnsemblPlants:AT4G39260.1 GeneID:830082 KEGG:ath:AT4G39260
TAIR:At4g39260 InParanoid:Q03251 OMA:GNNSGGY Genevestigator:Q03251
Uniprot:Q03251
Length = 169
Score = 163 (62.4 bits), Expect = 1.2e-14, Sum P(2) = 1.2e-14
Identities = 31/79 (39%), Positives = 51/79 (64%)
Query: 58 KIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAK 117
+ FVGG+ + N+++ + F QFGDV + +I+ D + RSRGFGF+TF E+A+ D + +
Sbjct: 7 RCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIEE 66
Query: 118 GNKLELAGAQVEVKKAEPK 136
N EL G + V +A+ +
Sbjct: 67 MNGKELDGRVITVNEAQSR 85
Score = 37 (18.1 bits), Expect = 1.2e-14, Sum P(2) = 1.2e-14
Identities = 9/18 (50%), Positives = 9/18 (50%)
Query: 226 EPSSLGYSGRYGGFNRGY 243
E S GY GG RGY
Sbjct: 126 ERRSGGYGSGGGGGGRGY 143
>UNIPROTKB|D4ACP9 [details] [associations]
symbol:D4ACP9 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 IPI:IPI00388048
ProteinModelPortal:D4ACP9 Ensembl:ENSRNOT00000002123 Uniprot:D4ACP9
Length = 253
Score = 186 (70.5 bits), Expect = 1.4e-14, P = 1.4e-14
Identities = 50/149 (33%), Positives = 74/149 (49%)
Query: 3 DRKTGQPRGFGFVTYADPSVVDKVI-EDTHIINGKQVEIKRTIPKGAVGSKD-FKTKKIF 60
D +T + R FGFVTY+ VD + H ++G VE KR + +V KKIF
Sbjct: 46 DPQTKRSRVFGFVTYSCVKEVDAAMCARPHKVDGCVVEPKRPFREDSVKPVVCLLAKKIF 105
Query: 61 VGGIPSSVNEDEFKDFFMQFGDVQEHQIMR-DHSTSRSRGFGFITFDTEQAVDDLLAKGN 119
+GGI E +D+F ++G ++ +IM D + RGF F+TFD VD ++ +
Sbjct: 106 IGGIKEDTEEHNLRDYFEKYGKIETIEIMEEDRQSGEKRGFAFVTFDDHYTVDKIVVQ-- 163
Query: 120 KLELAGAQ-VEVKKAEPKKPNLPQPSYRR 147
K +VKKA P K +P +R
Sbjct: 164 KCHTINRHNCDVKKA-PSKQEMPSVRSQR 191
Score = 118 (46.6 bits), Expect = 1.5e-05, P = 1.5e-05
Identities = 26/76 (34%), Positives = 46/76 (60%)
Query: 58 KIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLL-A 116
K+F+GG+ ++D ++ F Q+ D+ H ++ D T RSR FGF+T+ + VD + A
Sbjct: 14 KLFIGGLSFETSDDSLREHFEQW-DMLTHCVVMDPQTKRSRVFGFVTYSCVKEVDAAMCA 72
Query: 117 KGNKLELAGAQVEVKK 132
+ +K++ G VE K+
Sbjct: 73 RPHKVD--GCVVEPKR 86
>RGD|1564416 [details] [associations]
symbol:RGD1564416 "similar to Heterogeneous nuclear
ribonucleoprotein A1 (Helix-destabilizing protein
(Topoisomerase-inhibitor suppressed)" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:1564416 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
IPI:IPI00388666 Ensembl:ENSRNOT00000037037 Uniprot:F1LZ88
Length = 314
Score = 188 (71.2 bits), Expect = 1.6e-14, P = 1.6e-14
Identities = 48/151 (31%), Positives = 71/151 (47%)
Query: 1 MKDRKTGQPRGFGFVTYADPSVVDKVIEDT-HIINGKQVEIKRT---IPKGAVGSKDFKT 56
M+D T + RGFGFV Y VD + H + G+ V KR + K
Sbjct: 42 MRDPNTKRSRGFGFVPYTTVEEVDATMNARPHKVGGRVVGPKRVSCGMEKSQRPGAPLTM 101
Query: 57 KKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLA 116
KK+ VGGI E +D+F +G + +IM D + + RGF F+TFD +VD ++
Sbjct: 102 KKVLVGGINEDTEEHHLRDYFEWYGKTEVIEIMTDRGSVKKRGFAFVTFDDHDSVDKIVI 161
Query: 117 KGNKLELAGAQVEVKKAEPKKPNLPQPSYRR 147
+ + G EV+KA K+ S +R
Sbjct: 162 QKYHT-VNGHNCEVRKALSKQERASASSSQR 191
>TAIR|locus:2076096 [details] [associations]
symbol:GRP4 "glycine-rich RNA-binding protein 4"
species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS;IDA]
[GO:0005739 "mitochondrion" evidence=IDA] [GO:0003690
"double-stranded DNA binding" evidence=IDA] [GO:0003697
"single-stranded DNA binding" evidence=IDA] [GO:0006970 "response
to osmotic stress" evidence=IMP] [GO:0009409 "response to cold"
evidence=IEP] [GO:0009414 "response to water deprivation"
evidence=IEP] [GO:0009651 "response to salt stress" evidence=IMP]
[GO:0006364 "rRNA processing" evidence=RCA] [GO:0009664 "plant-type
cell wall organization" evidence=RCA] [GO:0042545 "cell wall
modification" evidence=RCA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005739
EMBL:CP002686 GO:GO:0000166 GO:GO:0009651 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0003690 GO:GO:0003697 EMBL:AP001297
eggNOG:COG0724 HOGENOM:HOG000276232 HSSP:Q14103
ProtClustDB:PLN03134 EMBL:AY070755 EMBL:AY097374 EMBL:AY085838
IPI:IPI00523873 RefSeq:NP_189025.1 RefSeq:NP_850629.1
UniGene:At.8272 ProteinModelPortal:Q9LIS2 SMR:Q9LIS2 STRING:Q9LIS2
PaxDb:Q8LDS0 PRIDE:Q9LIS2 EnsemblPlants:AT3G23830.1
EnsemblPlants:AT3G23830.2 GeneID:821966 KEGG:ath:AT3G23830
GeneFarm:3951 TAIR:At3g23830 InParanoid:Q9LIS2 OMA:CEDSANN
PhylomeDB:Q9LIS2 Genevestigator:Q9LIS2 Uniprot:Q9LIS2
Length = 136
Score = 163 (62.4 bits), Expect = 1.9e-14, Sum P(2) = 1.9e-14
Identities = 32/97 (32%), Positives = 56/97 (57%)
Query: 49 VGSKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTE 108
+GS + + K+FVGG+ ++ K F FG+V E ++ D T RSRGFGF++F E
Sbjct: 27 LGSLRYMSSKLFVGGLSWGTDDSSLKQAFTSFGEVTEATVIADRETGRSRGFGFVSFSCE 86
Query: 109 QAVDDLLAKGNKLELAGAQVEVKKAEPKKPNLPQPSY 145
+ ++ + + + EL G Q+ V A ++ + P+ S+
Sbjct: 87 DSANNAIKEMDGKELNGRQIRVNLAT-ERSSAPRSSF 122
Score = 35 (17.4 bits), Expect = 1.9e-14, Sum P(2) = 1.9e-14
Identities = 8/15 (53%), Positives = 8/15 (53%)
Query: 228 SSLGYSGRYGGFNRG 242
SS G G YGG G
Sbjct: 120 SSFGGGGGYGGGGGG 134
>UNIPROTKB|F1LW17 [details] [associations]
symbol:F1LW17 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104376 IPI:IPI00567724
Ensembl:ENSRNOT00000046658 ArrayExpress:F1LW17 Uniprot:F1LW17
Length = 249
Score = 162 (62.1 bits), Expect = 2.4e-14, Sum P(2) = 2.4e-14
Identities = 42/135 (31%), Positives = 65/135 (48%)
Query: 10 RGFGFVTYADPSVVDKVIEDTHIINGKQVEIKRTIPKGAVGSKD-------FKTKKIFVG 62
RGFGF+TY S V++V D + R + K AV +D KK++VG
Sbjct: 67 RGFGFLTY---SCVEEV--DAAVCARPHKAAVRVVGKRAVSREDSVKPGAHLMVKKLYVG 121
Query: 63 GIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLE 122
GI E + +F ++G ++ ++M + + RGF F+TFD VD +L K + +
Sbjct: 122 GIKEDTEEYNLRGYFKKYGKIETIEVMEGRQSGKKRGFAFVTFDDHDTVDKILQKHHAIN 181
Query: 123 LAGAQVEVKKAEPKK 137
G EV K K+
Sbjct: 182 --GNNCEVGKVLSKE 194
Score = 110 (43.8 bits), Expect = 4.1e-05, Sum P(2) = 4.1e-05
Identities = 19/46 (41%), Positives = 30/46 (65%)
Query: 1 MKDRKTGQPRGFGFVTYADPSVVDKVIEDTHIINGKQVEIKRTIPK 46
M+ R++G+ RGF FVT+ D VDK+++ H ING E+ + + K
Sbjct: 148 MEGRQSGKKRGFAFVTFDDHDTVDKILQKHHAINGNNCEVGKVLSK 193
Score = 35 (17.4 bits), Expect = 2.4e-14, Sum P(2) = 2.4e-14
Identities = 7/15 (46%), Positives = 8/15 (53%)
Query: 231 GYSGRYGGFNRGYDV 245
GY G GG Y+V
Sbjct: 228 GYGGGGGGSRGSYEV 242
>UNIPROTKB|F1PVV1 [details] [associations]
symbol:ELAVL3 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:ARRYTGP EMBL:AAEX03012413
Ensembl:ENSCAFT00000027494 Uniprot:F1PVV1
Length = 367
Score = 188 (71.2 bits), Expect = 3.0e-14, P = 3.0e-14
Identities = 53/164 (32%), Positives = 83/164 (50%)
Query: 1 MKDRKTGQPRGFGFVTYADPSVVDKVIEDTHIINGKQVEIKRT-IPKGAVGSKDFKTKKI 59
++D+ TGQ G+GFV Y+DP+ DK I + +NG +++ K + S + +
Sbjct: 71 VRDKITGQSLGYGFVNYSDPNDADKAI---NTLNGLKLQTKTIKVSYARPSSASIRDANL 127
Query: 60 FVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFD----TEQAVDDLL 115
+V G+P ++++ E + F Q+G + +I+ D T SRG GFI FD E+A+ L
Sbjct: 128 YVSGLPKTMSQKEMEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGL- 186
Query: 116 AKGNKLELAGAQVEVKKAE-PKKP-------NLPQPSYRRYNNP 151
G K A + VK A P + +L Q S RRY P
Sbjct: 187 -NGQKPLGAAEPITVKFANNPSQKTGQALLTHLYQSSARRYAGP 229
Score = 134 (52.2 bits), Expect = 2.6e-08, P = 2.6e-08
Identities = 26/94 (27%), Positives = 47/94 (50%)
Query: 47 GAVGSKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFD 106
G G+ D + V +P ++ +DEFK F GD++ +++RD T +S G+GF+ +
Sbjct: 29 GTNGATDDSKTNLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYS 88
Query: 107 TEQAVDDLLAKGNKLELAGAQVEVKKAEPKKPNL 140
D + N L+L ++V A P ++
Sbjct: 89 DPNDADKAINTLNGLKLQTKTIKVSYARPSSASI 122
>UNIPROTKB|Q14576 [details] [associations]
symbol:ELAVL3 "ELAV-like protein 3" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0007399
"nervous system development" evidence=IEA] [GO:0030154 "cell
differentiation" evidence=IEA] [GO:0017091 "AU-rich element
binding" evidence=IDA] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0007399 GO:GO:0030154
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091 eggNOG:COG0724
HOVERGEN:HBG002295 HOGENOM:HOG000231162 TIGRFAMs:TIGR01661
KO:K13208 EMBL:L26405 EMBL:AY036909 EMBL:AC008481 EMBL:BC014144
EMBL:D26158 IPI:IPI00031552 IPI:IPI00140449 RefSeq:NP_001411.2
RefSeq:NP_115657.2 UniGene:Hs.1701 ProteinModelPortal:Q14576
SMR:Q14576 IntAct:Q14576 MINT:MINT-1471958 STRING:Q14576
PhosphoSite:Q14576 DMDM:21264436 PaxDb:Q14576 PRIDE:Q14576
Ensembl:ENST00000359227 Ensembl:ENST00000438662 GeneID:1995
KEGG:hsa:1995 UCSC:uc002mrx.1 UCSC:uc002mry.1 CTD:1995
GeneCards:GC19M011562 HGNC:HGNC:3314 HPA:CAB013066 MIM:603458
neXtProt:NX_Q14576 PharmGKB:PA27742 InParanoid:Q14576 OMA:ARRYTGP
PhylomeDB:Q14576 ChiTaRS:ELAVL3 GenomeRNAi:1995 NextBio:8067
ArrayExpress:Q14576 Bgee:Q14576 CleanEx:HS_ELAVL3
Genevestigator:Q14576 GermOnline:ENSG00000196361 Uniprot:Q14576
Length = 367
Score = 188 (71.2 bits), Expect = 3.0e-14, P = 3.0e-14
Identities = 53/164 (32%), Positives = 83/164 (50%)
Query: 1 MKDRKTGQPRGFGFVTYADPSVVDKVIEDTHIINGKQVEIKRT-IPKGAVGSKDFKTKKI 59
++D+ TGQ G+GFV Y+DP+ DK I + +NG +++ K + S + +
Sbjct: 71 VRDKITGQSLGYGFVNYSDPNDADKAI---NTLNGLKLQTKTIKVSYARPSSASIRDANL 127
Query: 60 FVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFD----TEQAVDDLL 115
+V G+P ++++ E + F Q+G + +I+ D T SRG GFI FD E+A+ L
Sbjct: 128 YVSGLPKTMSQKEMEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGL- 186
Query: 116 AKGNKLELAGAQVEVKKAE-PKKP-------NLPQPSYRRYNNP 151
G K A + VK A P + +L Q S RRY P
Sbjct: 187 -NGQKPLGAAEPITVKFANNPSQKTGQALLTHLYQSSARRYAGP 229
Score = 134 (52.2 bits), Expect = 2.6e-08, P = 2.6e-08
Identities = 26/94 (27%), Positives = 47/94 (50%)
Query: 47 GAVGSKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFD 106
G G+ D + V +P ++ +DEFK F GD++ +++RD T +S G+GF+ +
Sbjct: 29 GTNGATDDSKTNLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYS 88
Query: 107 TEQAVDDLLAKGNKLELAGAQVEVKKAEPKKPNL 140
D + N L+L ++V A P ++
Sbjct: 89 DPNDADKAINTLNGLKLQTKTIKVSYARPSSASI 122
>UNIPROTKB|F1SA16 [details] [associations]
symbol:ELAVL3 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0017091 "AU-rich element binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:ARRYTGP EMBL:CU855518
Ensembl:ENSSSCT00000014872 Uniprot:F1SA16
Length = 367
Score = 188 (71.2 bits), Expect = 3.0e-14, P = 3.0e-14
Identities = 53/164 (32%), Positives = 83/164 (50%)
Query: 1 MKDRKTGQPRGFGFVTYADPSVVDKVIEDTHIINGKQVEIKRT-IPKGAVGSKDFKTKKI 59
++D+ TGQ G+GFV Y+DP+ DK I + +NG +++ K + S + +
Sbjct: 71 VRDKITGQSLGYGFVNYSDPNDADKAI---NTLNGLKLQTKTIKVSYARPSSASIRDANL 127
Query: 60 FVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFD----TEQAVDDLL 115
+V G+P ++++ E + F Q+G + +I+ D T SRG GFI FD E+A+ L
Sbjct: 128 YVSGLPKTMSQKEMEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGL- 186
Query: 116 AKGNKLELAGAQVEVKKAE-PKKP-------NLPQPSYRRYNNP 151
G K A + VK A P + +L Q S RRY P
Sbjct: 187 -NGQKPLGAAEPITVKFANNPSQKTGQALLTHLYQSSARRYAGP 229
Score = 134 (52.2 bits), Expect = 2.6e-08, P = 2.6e-08
Identities = 26/94 (27%), Positives = 47/94 (50%)
Query: 47 GAVGSKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFD 106
G G+ D + V +P ++ +DEFK F GD++ +++RD T +S G+GF+ +
Sbjct: 29 GTNGATDDSKTNLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYS 88
Query: 107 TEQAVDDLLAKGNKLELAGAQVEVKKAEPKKPNL 140
D + N L+L ++V A P ++
Sbjct: 89 DPNDADKAINTLNGLKLQTKTIKVSYARPSSASI 122
>UNIPROTKB|F1SHL4 [details] [associations]
symbol:F1SHL4 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104347 InterPro:IPR012956 Pfam:PF08143
EMBL:CU468866 Ensembl:ENSSSCT00000002164 OMA:QYGTIVE Uniprot:F1SHL4
Length = 280
Score = 183 (69.5 bits), Expect = 3.0e-14, P = 3.0e-14
Identities = 48/138 (34%), Positives = 81/138 (58%)
Query: 3 DRKTGQPRGFGFVTYADPSVVDKVIEDT-HIINGKQVEIKRTIPKGAVGSKDFKTKKIFV 61
D TG+ RGFGFV D + V+K+++ H +NG ++ P+ A K+ KKIFV
Sbjct: 106 DPNTGRSRGFGFVLIKDAASVEKILDQKEHRLNGDVID-----PEKAKVMKNDPVKKIFV 160
Query: 62 GGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITF-DTEQAVDDLLAKGNK 120
G P + ++ +DF +FG+++ ++ D +++ RGF FITF + E+ V +L K K
Sbjct: 161 GLNPEATEKN--RDFG-EFGEIEAIELPMDPKSNKRRGFVFITFKEEEEPVKKVLEK--K 215
Query: 121 LE-LAGAQVEVKKAEPKK 137
++G + E+K A+PK+
Sbjct: 216 FHTISGRKCEIKVAQPKE 233
Score = 119 (46.9 bits), Expect = 1.3e-05, P = 1.3e-05
Identities = 29/88 (32%), Positives = 52/88 (59%)
Query: 51 SKDFKTK-KIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQ 109
SK+ + + K+FVG + S + + K++F +FG+V + I D +T RSRGFGF+
Sbjct: 65 SKNVEEEGKMFVGDLSWSNRKKDLKNYFTKFGEVIDCTIKMDPNTGRSRGFGFVLIKDAA 124
Query: 110 AVDDLLAKGNKLELAGAQVEVKKAEPKK 137
+V+ +L + + L G ++ +KA+ K
Sbjct: 125 SVEKILDQ-KEHRLNGDVIDPEKAKVMK 151
>UNIPROTKB|I3L7S7 [details] [associations]
symbol:LOC100621383 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00570000079202 Ensembl:ENSSSCT00000025708
Uniprot:I3L7S7
Length = 275
Score = 183 (69.5 bits), Expect = 3.0e-14, P = 3.0e-14
Identities = 44/135 (32%), Positives = 68/135 (50%)
Query: 2 KDRKTGQPRGFGFVTYADPSVVDKVIEDTHIINGKQVEIKRTIPKGAVGSKDFKTKKIFV 61
KD KTG +GFGFV + + KV+ H+I+G+ + K K + + +++K+FV
Sbjct: 70 KDIKTGHSKGFGFVRFTEYETQVKVMSQRHMIDGRWCDCKLPNSKQSP-DEPLRSRKVFV 128
Query: 62 GGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKL 121
G + DE + FF Q+G+V + I + R F F+TF +Q L G L
Sbjct: 129 GRCTEDMTADELQQFFCQYGEVVDVFIPKPF-----RAFAFVTFADDQVAQSLC--GEDL 181
Query: 122 ELAGAQVEVKKAEPK 136
+ G V + AEPK
Sbjct: 182 IIKGISVHISNAEPK 196
Score = 111 (44.1 bits), Expect = 0.00015, P = 0.00015
Identities = 22/54 (40%), Positives = 32/54 (59%)
Query: 55 KTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTE 108
KT + V G+P E + K++F FG+V Q+ +D T S+GFGF+ F TE
Sbjct: 35 KTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDIKTGHSKGFGFVRF-TE 87
>UNIPROTKB|D4AB76 [details] [associations]
symbol:D4AB76 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR021662
Pfam:PF11627 IPI:IPI00558881 ProteinModelPortal:D4AB76
Ensembl:ENSRNOT00000043240 Uniprot:D4AB76
Length = 306
Score = 168 (64.2 bits), Expect = 3.0e-14, Sum P(2) = 3.0e-14
Identities = 46/136 (33%), Positives = 66/136 (48%)
Query: 1 MKDRKTGQPRGFGFVTYADPSVVDKVIEDT-HIINGKQVEIKRTIPK--GAVGSKDFKTK 57
M+D RGFGFVTY +D + H ++G VE KR + + K
Sbjct: 45 MRDPNNKISRGFGFVTYTTVEELDAAMNARPHKVDGGVVEPKRAVSREDSPRPGAHLTVK 104
Query: 58 KIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAK 117
KIFVG V ED F Q+G ++ +IM D + + RGF F+TFD +VD ++ +
Sbjct: 105 KIFVG-----VKEDTEGHHFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDPDSVDTIVIQ 159
Query: 118 GNKLELAGAQVEVKKA 133
+ G EV+KA
Sbjct: 160 KYHT-VNGHNCEVRKA 174
Score = 126 (49.4 bits), Expect = 2.4e-07, Sum P(2) = 2.4e-07
Identities = 28/87 (32%), Positives = 53/87 (60%)
Query: 58 KIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLL-A 116
K+F+GG+ ++ + F Q+G + + +MRD + SRGFGF+T+ T + +D + A
Sbjct: 15 KLFIGGLSFKTTDESLRSHFEQWGTLTDC-VMRDPNNKISRGFGFVTYTTVEELDAAMNA 73
Query: 117 KGNKLELAGAQVEVKKAEPKKPNLPQP 143
+ +K++ G VE K+A ++ + P+P
Sbjct: 74 RPHKVD--GGVVEPKRAVSREDS-PRP 97
Score = 106 (42.4 bits), Expect = 0.00037, Sum P(2) = 0.00037
Identities = 21/52 (40%), Positives = 31/52 (59%)
Query: 1 MKDRKTGQPRGFGFVTYADPSVVDK-VIEDTHIINGKQVEIKRTIPKGAVGS 51
M DR +G+ RGF FVT+ DP VD VI+ H +NG E+++ + + S
Sbjct: 131 MTDRGSGKKRGFAFVTFDDPDSVDTIVIQKYHTVNGHNCEVRKALSNQELAS 182
Score = 35 (17.4 bits), Expect = 3.0e-14, Sum P(2) = 3.0e-14
Identities = 8/16 (50%), Positives = 9/16 (56%)
Query: 228 SSLGYSGRYGGFNRGY 243
S G S Y G +RGY
Sbjct: 186 SQRGCSPGYSGGSRGY 201
>UNIPROTKB|Q2KJ45 [details] [associations]
symbol:TARDBP "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:NOG145464
HOGENOM:HOG000254792 HOVERGEN:HBG058671 OrthoDB:EOG447FTT
GeneTree:ENSGT00570000079202 EMBL:DAAA02042967 EMBL:DAAA02042968
UniGene:Bt.106561 EMBL:BC105527 IPI:IPI00695185 SMR:Q2KJ45
STRING:Q2KJ45 Ensembl:ENSBTAT00000033464 InParanoid:Q2KJ45
Uniprot:Q2KJ45
Length = 298
Score = 184 (69.8 bits), Expect = 3.4e-14, P = 3.4e-14
Identities = 44/135 (32%), Positives = 68/135 (50%)
Query: 2 KDRKTGQPRGFGFVTYADPSVVDKVIEDTHIINGKQVEIKRTIPKGAVGSKDFKTKKIFV 61
KD KTG +GFGFV + + KV+ H+I+G+ + K K + + +++K+FV
Sbjct: 137 KDIKTGHSKGFGFVRFTEYETQVKVMSQRHMIDGRWCDCKLPNSKQSP-DEPLRSRKVFV 195
Query: 62 GGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKL 121
G + DE + FF Q+G+V + I + R F F+TF +Q L G L
Sbjct: 196 GRCTEDMTADELRQFFCQYGEVVDVFIPKPF-----RAFAFVTFADDQVAQSLC--GEDL 248
Query: 122 ELAGAQVEVKKAEPK 136
+ G V + AEPK
Sbjct: 249 IIKGISVHISNAEPK 263
Score = 115 (45.5 bits), Expect = 5.5e-05, P = 5.5e-05
Identities = 23/54 (42%), Positives = 32/54 (59%)
Query: 55 KTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTE 108
KT + V G+P E + KD+F FG+V Q+ +D T S+GFGF+ F TE
Sbjct: 102 KTSDLIVLGLPWKTTEQDLKDYFSTFGEVLMVQVKKDIKTGHSKGFGFVRF-TE 154
>TAIR|locus:2049721 [details] [associations]
symbol:AT2G37220 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0009507 "chloroplast" evidence=ISM;IDA] [GO:0009579 "thylakoid"
evidence=IDA] [GO:0009941 "chloroplast envelope" evidence=IDA]
[GO:0009535 "chloroplast thylakoid membrane" evidence=IDA]
[GO:0009570 "chloroplast stroma" evidence=IDA] [GO:0009409
"response to cold" evidence=IEP;RCA] [GO:0010319 "stromule"
evidence=IDA] [GO:0045087 "innate immune response" evidence=IDA]
[GO:0008266 "poly(U) RNA binding" evidence=IDA] [GO:0009737
"response to abscisic acid stimulus" evidence=IEP] [GO:0009534
"chloroplast thylakoid" evidence=IDA] [GO:0009697 "salicylic acid
biosynthetic process" evidence=RCA] [GO:0009814 "defense response,
incompatible interaction" evidence=RCA] [GO:0019684
"photosynthesis, light reaction" evidence=RCA] [GO:0042742 "defense
response to bacterium" evidence=RCA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0009737 GO:GO:0009570 EMBL:CP002685 GenomeReviews:CT485783_GR
GO:GO:0008266 GO:GO:0000166 GO:GO:0009409 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0045087 GO:GO:0009941 EMBL:AC005896
GO:GO:0030529 GO:GO:0009535 GO:GO:0010319 eggNOG:COG0724
HOGENOM:HOG000276232 EMBL:AC006260 KO:K11294 EMBL:AF370167
EMBL:AY048251 EMBL:AY059129 IPI:IPI00540246 PIR:A84790
RefSeq:NP_181259.1 UniGene:At.25300 ProteinModelPortal:Q9ZUU4
SMR:Q9ZUU4 IntAct:Q9ZUU4 STRING:Q9ZUU4 SWISS-2DPAGE:Q9ZUU4
PaxDb:Q9ZUU4 PRIDE:Q9ZUU4 ProMEX:Q9ZUU4 EnsemblPlants:AT2G37220.1
GeneID:818299 KEGG:ath:AT2G37220 GeneFarm:4058 TAIR:At2g37220
InParanoid:Q9ZUU4 OMA:PFNVDSA PhylomeDB:Q9ZUU4
ProtClustDB:CLSN2684922 Genevestigator:Q9ZUU4 GermOnline:AT2G37220
Uniprot:Q9ZUU4
Length = 289
Score = 142 (55.0 bits), Expect = 3.6e-14, Sum P(2) = 3.6e-14
Identities = 28/92 (30%), Positives = 51/92 (55%)
Query: 47 GAVGSKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFD 106
G GS +++VG + V++ + F + G V E +++ D + RS+GFGF+T+D
Sbjct: 194 GGGGSGAGSGNRVYVGNLSWGVDDMALESLFSEQGKVVEARVIYDRDSGRSKGFGFVTYD 253
Query: 107 TEQAVDDLLAKGNKLELAGAQVEVKKAEPKKP 138
+ Q V + + + +L G Q+ V +AE + P
Sbjct: 254 SSQEVQNAIKSLDGADLDGRQIRVSEAEARPP 285
Score = 124 (48.7 bits), Expect = 2.7e-06, P = 2.7e-06
Identities = 26/78 (33%), Positives = 41/78 (52%)
Query: 58 KIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAK 117
K+FVG +P +V+ + F G+V+ +++ D T RSRGFGF+T + V+ +
Sbjct: 92 KLFVGNLPFNVDSAQLAQLFESAGNVEMVEVIYDKITGRSRGFGFVTMSSVSEVEAAAQQ 151
Query: 118 GNKLELAGAQVEVKKAEP 135
N EL G + V P
Sbjct: 152 FNGYELDGRPLRVNAGPP 169
Score = 62 (26.9 bits), Expect = 3.6e-14, Sum P(2) = 3.6e-14
Identities = 14/37 (37%), Positives = 22/37 (59%)
Query: 3 DRKTGQPRGFGFVTYADPSVVDKVIEDTHIINGKQVE 39
D+ TG+ RGFGFVT + S V+ + NG +++
Sbjct: 125 DKITGRSRGFGFVTMSSVSEVEAAAQQ---FNGYELD 158
>UNIPROTKB|B4DM51 [details] [associations]
symbol:MSI2 "RNA-binding protein Musashi homolog 2"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
HOGENOM:HOG000234441 HOVERGEN:HBG002295 UniGene:Hs.658922
HGNC:HGNC:18585 ChiTaRS:MSI2 EMBL:AC005325 EMBL:AC007431
EMBL:AC015883 EMBL:AC091181 EMBL:AK297295 IPI:IPI00908857
SMR:B4DM51 STRING:B4DM51 Ensembl:ENST00000442934 Uniprot:B4DM51
Length = 267
Score = 182 (69.1 bits), Expect = 3.8e-14, P = 3.8e-14
Identities = 38/92 (41%), Positives = 59/92 (64%)
Query: 55 KTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDL 114
+TKKIFVGG+ ++ ++ K +F QFG V++ +M D +T+R RGFGF+TF+ E V+ +
Sbjct: 47 RTKKIFVGGLSANTVVEDVKQYFEQFGKVEDAMLMFDKTTNRHRGFGFVTFENEDVVEKV 106
Query: 115 LAKGNKLELAGAQVEVKKAEPKKPNLPQPSYR 146
+ + E+ VE KKA+PK+ P P R
Sbjct: 107 -CEIHFHEINNKMVECKKAQPKEVMFP-PGTR 136
Score = 108 (43.1 bits), Expect = 0.00034, P = 0.00034
Identities = 24/47 (51%), Positives = 30/47 (63%)
Query: 1 MKDRKTGQPRGFGFVTYADPSVVDKVIE-DTHIINGKQVEIKRTIPK 46
M D+ T + RGFGFVT+ + VV+KV E H IN K VE K+ PK
Sbjct: 81 MFDKTTNRHRGFGFVTFENEDVVEKVCEIHFHEINNKMVECKKAQPK 127
>UNIPROTKB|F1N4V6 [details] [associations]
symbol:ELAVL3 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0017091 "AU-rich element binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:ARRYTGP EMBL:DAAA02019487
IPI:IPI00710891 Ensembl:ENSBTAT00000019169 Uniprot:F1N4V6
Length = 368
Score = 187 (70.9 bits), Expect = 3.9e-14, P = 3.9e-14
Identities = 53/164 (32%), Positives = 82/164 (50%)
Query: 1 MKDRKTGQPRGFGFVTYADPSVVDKVIEDTHIINGKQVEIKRT-IPKGAVGSKDFKTKKI 59
++D+ TGQ G+GFV Y+DP+ DK I + +NG +++ K + S + +
Sbjct: 71 VRDKITGQSLGYGFVNYSDPNDADKAI---NTLNGLKLQTKTIKVSYARPSSASIRDANL 127
Query: 60 FVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFD----TEQAVDDLL 115
+V G+P ++++ E + F Q+G + +I+ D T SRG GFI FD E+A+ L
Sbjct: 128 YVSGLPKTMSQKEMEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGL- 186
Query: 116 AKGNKLELAGAQVEVKKAE-PKKPN-------LPQPSYRRYNNP 151
G K A + VK A P + L Q S RRY P
Sbjct: 187 -NGQKPLGAAEPITVKFANNPSQKTGQALLTQLYQSSARRYAGP 229
Score = 134 (52.2 bits), Expect = 2.6e-08, P = 2.6e-08
Identities = 26/94 (27%), Positives = 47/94 (50%)
Query: 47 GAVGSKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFD 106
G G+ D + V +P ++ +DEFK F GD++ +++RD T +S G+GF+ +
Sbjct: 29 GTNGATDDSKTNLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYS 88
Query: 107 TEQAVDDLLAKGNKLELAGAQVEVKKAEPKKPNL 140
D + N L+L ++V A P ++
Sbjct: 89 DPNDADKAINTLNGLKLQTKTIKVSYARPSSASI 122
>UNIPROTKB|F1LW71 [details] [associations]
symbol:F1LW71 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR021662
Pfam:PF11627 IPI:IPI00563710 ProteinModelPortal:F1LW71
Ensembl:ENSRNOT00000048553 Uniprot:F1LW71
Length = 260
Score = 181 (68.8 bits), Expect = 4.9e-14, P = 4.9e-14
Identities = 46/139 (33%), Positives = 71/139 (51%)
Query: 1 MKDRKTGQPRGFGFVTYADPSVVDKVIEDTHIINGKQVEIKRTIPK--GAVGSKDFKTKK 58
M+D T + RGFGFVTYA VD+ +D H +++ R + + KK
Sbjct: 53 MRDPNTKRSRGFGFVTYAPVEEVDR--KD-HTRWMEELWNLRAVSREDSQTPGAHLTVKK 109
Query: 59 IFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKG 118
IFVGGI E +D+ Q+G ++ +IM D + + GF F+TFD +VD ++ +
Sbjct: 110 IFVGGIKEDTEEHHLRDYSEQYGKIEVVEIMTDRGSGKKGGFAFVTFDDHDSVDKIVIQK 169
Query: 119 NKLELAGAQVEVKKAEPKK 137
+ G EV+KA K+
Sbjct: 170 YHT-VNGHNCEVRKALSKQ 187
Score = 120 (47.3 bits), Expect = 8.3e-06, P = 8.3e-06
Identities = 21/56 (37%), Positives = 35/56 (62%)
Query: 57 KKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVD 112
+K+F GG+ ++ + F Q+G + + +MRD +T RSRGFGF+T+ + VD
Sbjct: 21 RKLFTGGLNFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYAPVEEVD 76
Score = 108 (43.1 bits), Expect = 0.00032, P = 0.00032
Identities = 26/77 (33%), Positives = 41/77 (53%)
Query: 1 MKDRKTGQPRGFGFVTYADPSVVDK-VIEDTHIINGKQVEIKRTIPKGAVGSKDFKTKKI 59
M DR +G+ GF FVT+ D VDK VI+ H +NG E+++ + K + S F +
Sbjct: 140 MTDRGSGKKGGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKALSKQEMASASFSQR-- 197
Query: 60 FVGGIPSSVNEDEFKDF 76
G S N ++F ++
Sbjct: 198 ---GRSGSRNYNDFGNY 211
>TAIR|locus:2119495 [details] [associations]
symbol:GR-RBP2 "AT4G13850" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=ISS;IDA] [GO:0005739
"mitochondrion" evidence=ISM;IDA] [GO:0009409 "response to cold"
evidence=IGI;IEP;IMP] [GO:0003690 "double-stranded DNA binding"
evidence=IDA] [GO:0003697 "single-stranded DNA binding"
evidence=IDA] [GO:0009414 "response to water deprivation"
evidence=IEP] [GO:0005524 "ATP binding" evidence=IDA] [GO:0001072
"RNA binding transcription antitermination factor activity"
evidence=IDA] [GO:0006970 "response to osmotic stress"
evidence=IMP] [GO:0009631 "cold acclimation" evidence=IMP]
[GO:0009651 "response to salt stress" evidence=IMP] [GO:0009845
"seed germination" evidence=IMP] [GO:0031564 "transcription
antitermination" evidence=IDA] [GO:0005507 "copper ion binding"
evidence=IDA] [GO:0005794 "Golgi apparatus" evidence=RCA]
[GO:0006364 "rRNA processing" evidence=RCA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005739 GO:GO:0005524 EMBL:CP002687 GenomeReviews:CT486007_GR
GO:GO:0009409 Gene3D:3.30.70.330 GO:GO:0005507 GO:GO:0003723
GO:GO:0006970 GO:GO:0009845 GO:GO:0003690 GO:GO:0003697
eggNOG:COG0724 EMBL:AL035528 EMBL:AL161537 HOGENOM:HOG000276232
EMBL:AJ002892 EMBL:AY072361 EMBL:BT002197 EMBL:AY085621 EMBL:X69377
EMBL:Z18189 IPI:IPI00527583 PIR:S31443 PIR:T05254
RefSeq:NP_193121.1 UniGene:At.15585 UniGene:At.2
ProteinModelPortal:Q9SVM8 SMR:Q9SVM8 IntAct:Q9SVM8 STRING:Q9SVM8
PaxDb:Q9SVM8 PRIDE:Q9SVM8 ProMEX:Q9SVM8 EnsemblPlants:AT4G13850.1
GeneID:827019 KEGG:ath:AT4G13850 GeneFarm:3949 TAIR:At4g13850
InParanoid:Q9SVM8 OMA:ISEMDGK PhylomeDB:Q9SVM8 ProtClustDB:PLN03134
Genevestigator:Q9SVM8 Uniprot:Q9SVM8
Length = 158
Score = 154 (59.3 bits), Expect = 4.9e-14, Sum P(2) = 4.9e-14
Identities = 31/94 (32%), Positives = 53/94 (56%)
Query: 49 VGSKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTE 108
+GS + K+F+GG+ ++ +D F FGDV + +++ D T RSRGFGF+ F+ E
Sbjct: 27 LGSLRLMSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDE 86
Query: 109 QAVDDLLAKGNKLELAGAQVEVKKAEPKKPNLPQ 142
A +++ + EL G + V A + P+ P+
Sbjct: 87 GAATAAISEMDGKELNGRHIRVNPANDR-PSAPR 119
Score = 40 (19.1 bits), Expect = 4.9e-14, Sum P(2) = 4.9e-14
Identities = 9/18 (50%), Positives = 9/18 (50%)
Query: 231 GYSGRYGGFNRGYDVTGD 248
G G YGG GY GD
Sbjct: 136 GGGGGYGGGGGGYGGGGD 153
Score = 37 (18.1 bits), Expect = 1.0e-13, Sum P(2) = 1.0e-13
Identities = 7/12 (58%), Positives = 8/12 (66%)
Query: 231 GYSGRYGGFNRG 242
GYSG GG+ G
Sbjct: 126 GYSGGGGGYGGG 137
Score = 37 (18.1 bits), Expect = 1.0e-13, Sum P(2) = 1.0e-13
Identities = 8/17 (47%), Positives = 9/17 (52%)
Query: 231 GYSGRYGGFNRGYDVTG 247
GY G GG+ G D G
Sbjct: 140 GYGGGGGGYGGGGDGGG 156
>UNIPROTKB|L7N0C2 [details] [associations]
symbol:L7N0C2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA]
GeneTree:ENSGT00550000074566 EMBL:AAEX03014397
Ensembl:ENSCAFT00000016130 Uniprot:L7N0C2
Length = 278
Score = 163 (62.4 bits), Expect = 5.4e-14, Sum P(2) = 5.4e-14
Identities = 38/119 (31%), Positives = 60/119 (50%)
Query: 31 HIINGKQVEIKRTIPK--GAVGSKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQI 88
H ++G+ VE KR + + KKIFVGGI E +D+F Q+G ++ +I
Sbjct: 41 HKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEI 100
Query: 89 MRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVKKAEPKKPNLPQPSYRR 147
M + + RGF F+TFD +VD ++ + + G EV+KA K+ S +R
Sbjct: 101 MTGRGSGKKRGFAFVTFDDHDSVDKIVIQKYHT-VNGHNCEVRKALSKQEMASASSSQR 158
Score = 35 (17.4 bits), Expect = 5.4e-14, Sum P(2) = 5.4e-14
Identities = 7/15 (46%), Positives = 9/15 (60%)
Query: 234 GRYGGFNRGYDVTGD 248
G YGG GY+ G+
Sbjct: 199 GGYGGSGDGYNGFGN 213
>UNIPROTKB|F1NBY1 [details] [associations]
symbol:TARDBP "TAR DNA-binding protein 43" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003690 "double-stranded DNA binding" evidence=IEA] [GO:0003730
"mRNA 3'-UTR binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0043922
"negative regulation by host of viral transcription" evidence=IEA]
[GO:0070935 "3'-UTR-mediated mRNA stabilization" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0008380 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003730 GO:GO:0003690 GO:GO:0070935
IPI:IPI00596633 OMA:QFFSQYG GeneTree:ENSGT00570000079202
EMBL:AADN02040753 PRIDE:F1NBY1 Ensembl:ENSGALT00000004585
Uniprot:F1NBY1
Length = 414
Score = 187 (70.9 bits), Expect = 5.4e-14, P = 5.4e-14
Identities = 45/135 (33%), Positives = 68/135 (50%)
Query: 2 KDRKTGQPRGFGFVTYADPSVVDKVIEDTHIINGKQVEIKRTIPKGAVGSKDFKTKKIFV 61
KD KTG +GFGFV + D KV+ H+I+G+ + K K + + +++K+FV
Sbjct: 137 KDIKTGHSKGFGFVRFTDYETQVKVMSQRHMIDGRWCDCKLPNSKQSP-DEPLRSRKVFV 195
Query: 62 GGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKL 121
G + DE + FF Q+G+V + I + R F F+TF +Q L G L
Sbjct: 196 GRCTEDMTADELQQFFAQYGEVVDVFIPKPF-----RAFAFVTFADDQVAQSLC--GEDL 248
Query: 122 ELAGAQVEVKKAEPK 136
+ G V + AEPK
Sbjct: 249 IIKGISVHISNAEPK 263
Score = 112 (44.5 bits), Expect = 0.00024, P = 0.00024
Identities = 23/58 (39%), Positives = 33/58 (56%)
Query: 55 KTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITF-DTEQAV 111
KT + V G+P E + K++F FG+V Q+ +D T S+GFGF+ F D E V
Sbjct: 102 KTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDIKTGHSKGFGFVRFTDYETQV 159
>UNIPROTKB|Q5ZLN5 [details] [associations]
symbol:TARDBP "TAR DNA-binding protein 43" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0006355 GO:GO:0008380 GO:GO:0000166 GO:GO:0003677
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0006351 GO:GO:0003723
EMBL:AJ719699 IPI:IPI00596633 RefSeq:NP_001026049.1
UniGene:Gga.16753 HSSP:Q13148 ProteinModelPortal:Q5ZLN5 SMR:Q5ZLN5
STRING:Q5ZLN5 PRIDE:Q5ZLN5 GeneID:419453 KEGG:gga:419453 CTD:23435
eggNOG:NOG145464 HOGENOM:HOG000254792 HOVERGEN:HBG058671
InParanoid:Q5ZLN5 OrthoDB:EOG447FTT NextBio:20822507 Uniprot:Q5ZLN5
Length = 414
Score = 187 (70.9 bits), Expect = 5.4e-14, P = 5.4e-14
Identities = 45/135 (33%), Positives = 68/135 (50%)
Query: 2 KDRKTGQPRGFGFVTYADPSVVDKVIEDTHIINGKQVEIKRTIPKGAVGSKDFKTKKIFV 61
KD KTG +GFGFV + D KV+ H+I+G+ + K K + + +++K+FV
Sbjct: 137 KDIKTGHSKGFGFVRFTDYETQVKVMSQRHMIDGRWCDCKLPNSKQSP-DEPLRSRKVFV 195
Query: 62 GGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKL 121
G + DE + FF Q+G+V + I + R F F+TF +Q L G L
Sbjct: 196 GRCTEDMTADELQQFFAQYGEVVDVFIPKPF-----RAFAFVTFADDQVAQSLC--GEDL 248
Query: 122 ELAGAQVEVKKAEPK 136
+ G V + AEPK
Sbjct: 249 IIKGISVHISNAEPK 263
Score = 112 (44.5 bits), Expect = 0.00024, P = 0.00024
Identities = 23/58 (39%), Positives = 33/58 (56%)
Query: 55 KTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITF-DTEQAV 111
KT + V G+P E + K++F FG+V Q+ +D T S+GFGF+ F D E V
Sbjct: 102 KTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDIKTGHSKGFGFVRFTDYETQV 159
>FB|FBgn0010258 [details] [associations]
symbol:Rbp4 "RNA-binding protein 4" species:7227 "Drosophila
melanogaster" [GO:0005737 "cytoplasm" evidence=IDA] [GO:0003727
"single-stranded RNA binding" evidence=IDA] [GO:0006397 "mRNA
processing" evidence=ISS] [GO:0003729 "mRNA binding"
evidence=ISS;NAS] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005737 GO:GO:0000166 GO:GO:0003729
GO:GO:0003727 Gene3D:3.30.70.330 HSSP:P09651 EMBL:U18401
ProteinModelPortal:Q24024 SMR:Q24024 IntAct:Q24024 PRIDE:Q24024
FlyBase:FBgn0010258 eggNOG:NOG289504 InParanoid:Q24024
OrthoDB:EOG4CNP6S Bgee:Q24024 Uniprot:Q24024
Length = 428
Score = 187 (70.9 bits), Expect = 5.9e-14, P = 5.9e-14
Identities = 52/152 (34%), Positives = 77/152 (50%)
Query: 1 MKDRKTGQPRGFGFVTYADPSVVDKVIEDT-HIINGKQVEIKRTIPK------GAVGSK- 52
++D + RGFGFVTY DP V+ V H I+ K VE K +P+ G VGS
Sbjct: 64 LRDPVSNHSRGFGFVTYVDPKSVEIVQRARPHTIDNKIVETKHALPRQDFKRGGGVGSVV 123
Query: 53 -DF-------KTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFIT 104
F +K+IF+GG+ +E+ +++F QFG V +++ D T R R FGF+
Sbjct: 124 GSFGCEAGFMNSKRIFLGGLKEYHDENIVREYFSQFGPVASVKLLMDRETGRQRAFGFLE 183
Query: 105 FDTEQAVDDLLAKGNKLELAGAQVEVKKAEPK 136
F + + LA K + VEVK++ K
Sbjct: 184 FVDPSSAEKALAP-RKHWILQTLVEVKRSTQK 214
Score = 133 (51.9 bits), Expect = 8.8e-08, P = 8.8e-08
Identities = 28/93 (30%), Positives = 54/93 (58%)
Query: 46 KGAVGSKDFK-TKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFIT 104
K A+ + ++ +KIF+GG+ + + + FF QFG V + ++RD ++ SRGFGF+T
Sbjct: 20 KTAIKEEGYEHLRKIFIGGLSTQTTVETLRGFFSQFGIVADAVVLRDPVSNHSRGFGFVT 79
Query: 105 FDTEQAVDDLLAKGNKLELAGAQVEVKKAEPKK 137
+ ++V+ ++ + + VE K A P++
Sbjct: 80 YVDPKSVE-IVQRARPHTIDNKIVETKHALPRQ 111
>UNIPROTKB|D4ABW2 [details] [associations]
symbol:D4ABW2 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR021662
Pfam:PF11627 IPI:IPI00781059 ProteinModelPortal:D4ABW2
Ensembl:ENSRNOT00000044642 Uniprot:D4ABW2
Length = 279
Score = 180 (68.4 bits), Expect = 6.5e-14, P = 6.5e-14
Identities = 51/149 (34%), Positives = 73/149 (48%)
Query: 1 MKDRKTGQPRGFGFVTYADPSVVDKVIEDT-HIINGKQVEIKRTIPKGAVGSKDFKT-KK 58
M+D T + RGFGFVTYA VD + H + G+ VE KR K + T KK
Sbjct: 48 MRDPNTKRSRGFGFVTYATVEEVDAAMNARPHKVGGRAVEPKRAGSKDSQRPGAHLTMKK 107
Query: 59 IFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKG 118
IFVGG+ E +D+ Q G + +I D + + R F F+TFD +VD ++ +
Sbjct: 108 IFVGGVKEDTEEHRLRDYLEQNGKTEVTEITTDRGSGK-RDFAFVTFDN--SVDKIVIQK 164
Query: 119 NKLELAGAQVEVKKAEPKKPNLPQPSYRR 147
+ G EV+KA K+ S +R
Sbjct: 165 YST-VNGHNCEVRKALSKQEMASASSSQR 192
Score = 141 (54.7 bits), Expect = 2.2e-09, P = 2.2e-09
Identities = 33/88 (37%), Positives = 52/88 (59%)
Query: 57 KKIFVGGIP--SSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDL 114
+K+FVGG+ +++ F Q+G + +H +MRD +T RSRGFGF+T+ T + VD
Sbjct: 14 QKLFVGGLSFEATLESLSLTSHFEQWGTLTDHVVMRDPNTKRSRGFGFVTYATVEEVDAA 73
Query: 115 L-AKGNKLELAGAQVEVKKAEPKKPNLP 141
+ A+ +K+ G VE K+A K P
Sbjct: 74 MNARPHKV--GGRAVEPKRAGSKDSQRP 99
>TAIR|locus:2122009 [details] [associations]
symbol:RBP31 "AT4G24770" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=ISS;IDA;TAS]
[GO:0009507 "chloroplast" evidence=ISM;IDA] [GO:0009579 "thylakoid"
evidence=IDA] [GO:0009941 "chloroplast envelope" evidence=IDA]
[GO:0009535 "chloroplast thylakoid membrane" evidence=IDA]
[GO:0009570 "chloroplast stroma" evidence=IDA] [GO:0045087 "innate
immune response" evidence=IDA] [GO:0008266 "poly(U) RNA binding"
evidence=IDA] [GO:0009451 "RNA modification" evidence=IMP]
[GO:0009073 "aromatic amino acid family biosynthetic process"
evidence=RCA] [GO:0009965 "leaf morphogenesis" evidence=RCA]
[GO:0016226 "iron-sulfur cluster assembly" evidence=RCA]
[GO:0030154 "cell differentiation" evidence=RCA] [GO:0045036
"protein targeting to chloroplast" evidence=RCA] [GO:0045893
"positive regulation of transcription, DNA-dependent" evidence=RCA]
[GO:0009631 "cold acclimation" evidence=IMP] [GO:0016553 "base
conversion or substitution editing" evidence=IMP] [GO:0043489 "RNA
stabilization" evidence=IMP] [GO:0006396 "RNA processing"
evidence=TAS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0009570 EMBL:CP002687
GenomeReviews:CT486007_GR GO:GO:0008266 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0045087 GO:GO:0009941 GO:GO:0009631
GO:GO:0016553 GO:GO:0006396 GO:GO:0030529 EMBL:AL035356
EMBL:AL161562 GO:GO:0009535 eggNOG:COG0724 HOGENOM:HOG000276232
EMBL:M94554 EMBL:X65255 EMBL:U08467 EMBL:D31712 EMBL:D31713
IPI:IPI00523699 IPI:IPI00542634 IPI:IPI00760320 PIR:S28057
PIR:S53492 RefSeq:NP_194208.1 UniGene:At.38112 UniGene:At.70990
ProteinModelPortal:Q04836 SMR:Q04836 STRING:Q04836 PaxDb:Q04836
PRIDE:Q04836 ProMEX:Q04836 EnsemblPlants:AT4G24770.1 GeneID:828579
KEGG:ath:AT4G24770 GeneFarm:4009 TAIR:At4g24770 InParanoid:Q04836
OMA:NRYDLNG PhylomeDB:Q04836 ProtClustDB:CLSN2915857
Genevestigator:Q04836 GermOnline:AT4G24770 GO:GO:0043489
Uniprot:Q04836
Length = 329
Score = 183 (69.5 bits), Expect = 7.2e-14, P = 7.2e-14
Identities = 39/142 (27%), Positives = 74/142 (52%)
Query: 3 DRKTGQPRGFGFVTYADPSVVDKVIE--DTHIINGKQVEIKRTIPKGAVGSKDFKTK--- 57
+R+T Q RGFGFVT + + +E + + +NG+ + + + P+G+ + +
Sbjct: 184 NRETDQSRGFGFVTMSSVDEAETAVEKFNRYDLNGRLLTVNKAAPRGSRPERAPRVYEPA 243
Query: 58 -KIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLA 116
+++VG +P V+ + F + G V E +++ D T RSRGFGF+T +++ ++
Sbjct: 244 FRVYVGNLPWDVDNGRLEQLFSEHGKVVEARVVYDRETGRSRGFGFVTMSDVDELNEAIS 303
Query: 117 KGNKLELAGAQVEVKKAEPKKP 138
+ L G + V AE + P
Sbjct: 304 ALDGQNLEGRAIRVNVAEERPP 325
Score = 137 (53.3 bits), Expect = 9.6e-09, P = 9.6e-09
Identities = 35/121 (28%), Positives = 61/121 (50%)
Query: 39 EIKRTIPKGAVGSK-DF----KTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHS 93
E + + +GAV + +F + K+FVG + VN F Q G V+ +++ +
Sbjct: 127 ESEGDVSEGAVSERAEFPEPSEEAKLFVGNLAYDVNSQALAMLFEQAGTVEIAEVIYNRE 186
Query: 94 TSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVKKAEPK------KPNLPQPSYRR 147
T +SRGFGF+T + + + K N+ +L G + V KA P+ P + +P++R
Sbjct: 187 TDQSRGFGFVTMSSVDEAETAVEKFNRYDLNGRLLTVNKAAPRGSRPERAPRVYEPAFRV 246
Query: 148 Y 148
Y
Sbjct: 247 Y 247
>UNIPROTKB|E2RF95 [details] [associations]
symbol:E2RF95 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR021662
Pfam:PF11627 GeneTree:ENSGT00550000074566 EMBL:AAEX03008728
Ensembl:ENSCAFT00000001067 OMA:CTTATVE Uniprot:E2RF95
Length = 308
Score = 181 (68.8 bits), Expect = 9.1e-14, P = 9.1e-14
Identities = 49/151 (32%), Positives = 74/151 (49%)
Query: 2 KDRKTGQPRGFGFVTYADPSV--VDKVIEDT-HIINGKQVEIKRTIPK--GAVGSKDFKT 56
+D T RGFGF+T +V VD + H ++G+ VE KR + +
Sbjct: 47 RDPNTKGSRGFGFITCTTATVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTV 106
Query: 57 KKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLA 116
KK FVGGI E +D+F Q+G ++ +IM D + + R F F+TFD +VD ++
Sbjct: 107 KKTFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMIDPGSGK-RSFAFVTFDDHDSVDKIVI 165
Query: 117 KGNKLELAGAQVEVKKAEPKKPNLPQPSYRR 147
+ + G EVKKA K+ S +R
Sbjct: 166 QKYHT-VNGHNCEVKKALSKQEQTSVSSSQR 195
Score = 114 (45.2 bits), Expect = 7.9e-05, P = 7.9e-05
Identities = 30/87 (34%), Positives = 50/87 (57%)
Query: 51 SKD-FKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTE- 108
SKD + +K+F+GG+ + + + Q+G + + + RD +T SRGFGFIT T
Sbjct: 7 SKDPEQLRKLFIGGLSLEITNESLRSHSEQWGMLTDRVVRRDPNTKGSRGFGFITCTTAT 66
Query: 109 -QAVDDLL-AKGNKLELAGAQVEVKKA 133
+ VD + A+ +K++ G VE K+A
Sbjct: 67 VEEVDAAMNARPHKVD--GRVVEPKRA 91
>UNIPROTKB|F1M0H6 [details] [associations]
symbol:F1M0H6 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 IPI:IPI00766574
Ensembl:ENSRNOT00000044621 Uniprot:F1M0H6
Length = 360
Score = 164 (62.8 bits), Expect = 9.1e-14, Sum P(2) = 9.1e-14
Identities = 48/140 (34%), Positives = 73/140 (52%)
Query: 1 MKDRKTGQPRGFGFVTYADPSVVDKVI-EDTHIINGKQVEIKRTIPKG---AVGSKDFKT 56
M+D +T RGFGFVTY+ VD + H ++G+ VE K+ + + +G+
Sbjct: 64 MRDPQTKCSRGFGFVTYSCVEEVDAAMCAWLHKVDGRVVEPKKAVSREDSVKLGAH-LMV 122
Query: 57 KKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLA 116
KK FVGGI E KD+F ++G + E + M + + R RGF F F + VD ++
Sbjct: 123 KKTFVGGIKEDTEEYNLKDYFEKYGKI-ETEGMENRQSGR-RGFAFAIFG-DHDVDKIVV 179
Query: 117 KGNKLELAGAQVEVKKAEPK 136
+ + + G EVKKA K
Sbjct: 180 QKHHT-INGHNCEVKKALSK 198
Score = 128 (50.1 bits), Expect = 6.3e-08, Sum P(2) = 6.3e-08
Identities = 29/96 (30%), Positives = 54/96 (56%)
Query: 46 KGAVGSKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITF 105
+GA + + +K+F+GG+ +D ++ F + G + + +MRD T SRGFGF+T+
Sbjct: 21 RGADPKEPEQLRKLFIGGLSFETADDSLREHFKKRGTLTDCVVMRDPQTKCSRGFGFVTY 80
Query: 106 DTEQAVDDLLAKG-NKLELAGAQVEVKKAEPKKPNL 140
+ VD + +K++ G VE KKA ++ ++
Sbjct: 81 SCVEEVDAAMCAWLHKVD--GRVVEPKKAVSREDSV 114
Score = 39 (18.8 bits), Expect = 9.1e-14, Sum P(2) = 9.1e-14
Identities = 10/19 (52%), Positives = 10/19 (52%)
Query: 231 GYSGR--YGGFNRGYDVTG 247
GYS R YGG GY G
Sbjct: 263 GYSSRGGYGGGGPGYGNQG 281
Score = 38 (18.4 bits), Expect = 1.2e-13, Sum P(2) = 1.2e-13
Identities = 9/19 (47%), Positives = 12/19 (63%)
Query: 231 GYSGRYGGFNRGYD-VTGD 248
G G +GG + GY+ V GD
Sbjct: 236 GSRGSFGGGDGGYNGVGGD 254
>UNIPROTKB|D4A8U2 [details] [associations]
symbol:D4A8U2 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 IPI:IPI00947740
ProteinModelPortal:D4A8U2 Ensembl:ENSRNOT00000064543
ArrayExpress:D4A8U2 Uniprot:D4A8U2
Length = 196
Score = 178 (67.7 bits), Expect = 1.0e-13, P = 1.0e-13
Identities = 39/121 (32%), Positives = 63/121 (52%)
Query: 1 MKDRKTGQPRGFGFVTYADPSVVDKVI-EDTHIINGKQVEIKRTIPK--GAVGSKDFKTK 57
M+D +T + R F FVTY+ VD + H ++G+ VE KR + + K
Sbjct: 45 MRDPQTKRSRSFSFVTYSCVKEVDAAMCAQPHNVDGRVVEPKRAVSREDSVKPGAHLTVK 104
Query: 58 KIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAK 117
KIFVGGI E +D+F ++G ++ ++M D + + R F+TFD VD ++ +
Sbjct: 105 KIFVGGIKEDTEEYNLRDYFEKYGKIKTMEVMEDRLSGKERLL-FVTFDDHDTVDKIVGR 163
Query: 118 G 118
G
Sbjct: 164 G 164
Score = 122 (48.0 bits), Expect = 1.3e-06, P = 1.3e-06
Identities = 25/85 (29%), Positives = 50/85 (58%)
Query: 57 KKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLL- 115
+K+F+GG+ +D ++ F ++G + + +MRD T RSR F F+T+ + VD +
Sbjct: 13 RKLFIGGLSFEATDDSLREHFEKWGTLTDCVVMRDPQTKRSRSFSFVTYSCVKEVDAAMC 72
Query: 116 AKGNKLELAGAQVEVKKAEPKKPNL 140
A+ + ++ G VE K+A ++ ++
Sbjct: 73 AQPHNVD--GRVVEPKRAVSREDSV 95
>UNIPROTKB|G3MX91 [details] [associations]
symbol:TARDBP "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0070935 "3'-UTR-mediated mRNA stabilization"
evidence=IEA] [GO:0043922 "negative regulation by host of viral
transcription" evidence=IEA] [GO:0008380 "RNA splicing"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0003730 "mRNA
3'-UTR binding" evidence=IEA] [GO:0003690 "double-stranded DNA
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0008380
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003730 GO:GO:0003690
GO:GO:0043922 GO:GO:0070935 CTD:23435 OMA:QFFSQYG
GeneTree:ENSGT00570000079202 EMBL:DAAA02042967 EMBL:DAAA02042968
RefSeq:NP_001039950.2 UniGene:Bt.106561 Ensembl:ENSBTAT00000065252
GeneID:540632 KEGG:bta:540632 NextBio:20878740 Uniprot:G3MX91
Length = 414
Score = 184 (69.8 bits), Expect = 1.2e-13, P = 1.2e-13
Identities = 44/135 (32%), Positives = 68/135 (50%)
Query: 2 KDRKTGQPRGFGFVTYADPSVVDKVIEDTHIINGKQVEIKRTIPKGAVGSKDFKTKKIFV 61
KD KTG +GFGFV + + KV+ H+I+G+ + K K + + +++K+FV
Sbjct: 137 KDIKTGHSKGFGFVRFTEYETQVKVMSQRHMIDGRWCDCKLPNSKQSP-DEPLRSRKVFV 195
Query: 62 GGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKL 121
G + DE + FF Q+G+V + I + R F F+TF +Q L G L
Sbjct: 196 GRCTEDMTADELRQFFCQYGEVVDVFIPKPF-----RAFAFVTFADDQVAQSLC--GEDL 248
Query: 122 ELAGAQVEVKKAEPK 136
+ G V + AEPK
Sbjct: 249 IIKGISVHISNAEPK 263
Score = 115 (45.5 bits), Expect = 0.00010, P = 0.00010
Identities = 23/54 (42%), Positives = 32/54 (59%)
Query: 55 KTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTE 108
KT + V G+P E + KD+F FG+V Q+ +D T S+GFGF+ F TE
Sbjct: 102 KTSDLIVLGLPWKTTEQDLKDYFSTFGEVLMVQVKKDIKTGHSKGFGFVRF-TE 154
>UNIPROTKB|E2QS43 [details] [associations]
symbol:TARDBP "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0070935 "3'-UTR-mediated mRNA stabilization"
evidence=IEA] [GO:0043922 "negative regulation by host of viral
transcription" evidence=IEA] [GO:0008380 "RNA splicing"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0003730 "mRNA
3'-UTR binding" evidence=IEA] [GO:0003690 "double-stranded DNA
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0008380
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003730 GO:GO:0003690
GO:GO:0043922 GO:GO:0070935 CTD:23435 OMA:QFFSQYG
GeneTree:ENSGT00570000079202 EMBL:AAEX03001938 RefSeq:XP_535409.3
Ensembl:ENSCAFT00000026536 GeneID:478234 KEGG:cfa:478234
NextBio:20853591 Uniprot:E2QS43
Length = 414
Score = 184 (69.8 bits), Expect = 1.2e-13, P = 1.2e-13
Identities = 44/135 (32%), Positives = 68/135 (50%)
Query: 2 KDRKTGQPRGFGFVTYADPSVVDKVIEDTHIINGKQVEIKRTIPKGAVGSKDFKTKKIFV 61
KD KTG +GFGFV + + KV+ H+I+G+ + K K + + +++K+FV
Sbjct: 137 KDIKTGHSKGFGFVRFTEYETQVKVMSQRHMIDGRWCDCKLPNSKQSP-DEPLRSRKVFV 195
Query: 62 GGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKL 121
G + DE + FF Q+G+V + I + R F F+TF +Q L G L
Sbjct: 196 GRCTEDMTADELRQFFCQYGEVVDVFIPKPF-----RAFAFVTFADDQVAQSLC--GEDL 248
Query: 122 ELAGAQVEVKKAEPK 136
+ G V + AEPK
Sbjct: 249 IIKGISVHISNAEPK 263
Score = 111 (44.1 bits), Expect = 0.00032, P = 0.00032
Identities = 22/54 (40%), Positives = 32/54 (59%)
Query: 55 KTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTE 108
KT + V G+P E + K++F FG+V Q+ +D T S+GFGF+ F TE
Sbjct: 102 KTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDIKTGHSKGFGFVRF-TE 154
>RGD|620145 [details] [associations]
symbol:Rbm3 "RNA binding motif (RNP1, RRM) protein 3"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005515
"protein binding" evidence=IPI] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005737 "cytoplasm" evidence=IDA] [GO:0006412 "translation"
evidence=ISO] [GO:0006417 "regulation of translation"
evidence=ISO;ISS] [GO:0006950 "response to stress" evidence=IEA]
[GO:0009409 "response to cold" evidence=ISO] [GO:0015934 "large
ribosomal subunit" evidence=IDA] [GO:0030425 "dendrite"
evidence=IDA] [GO:0035196 "production of miRNAs involved in gene
silencing by miRNA" evidence=ISO] [GO:0043023 "ribosomal large
subunit binding" evidence=ISO] [GO:0045727 "positive regulation of
translation" evidence=IDA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 RGD:620145 GO:GO:0005634
GO:GO:0005737 GO:GO:0000166 GO:GO:0006412 GO:GO:0030425
GO:GO:0009409 Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0045727
eggNOG:COG0724 HOVERGEN:HBG107480 HSSP:P09651 HOGENOM:HOG000276232
OrthoDB:EOG4HHP40 GO:GO:0035196 GO:GO:0043023 CTD:5935 KO:K13186
EMBL:FM093406 EMBL:AF355190 IPI:IPI00367437 IPI:IPI00955177
RefSeq:NP_446148.1 UniGene:Rn.18057 ProteinModelPortal:Q925G0
MINT:MINT-4611770 STRING:Q925G0 PRIDE:Q925G0 GeneID:114488
KEGG:rno:114488 UCSC:RGD:620145 InParanoid:Q925G0 NextBio:618509
Genevestigator:Q925G0 Uniprot:Q925G0
Length = 155
Score = 152 (58.6 bits), Expect = 1.3e-13, Sum P(2) = 1.3e-13
Identities = 30/76 (39%), Positives = 43/76 (56%)
Query: 58 KIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAK 117
K+FVGG+ + +E +D F FG + E +++D T RSRGFGFITF + D++
Sbjct: 7 KLFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASDVMRA 66
Query: 118 GNKLELAGAQVEVKKA 133
N L G Q+ V A
Sbjct: 67 MNGESLDGRQIRVDHA 82
Score = 38 (18.4 bits), Expect = 1.3e-13, Sum P(2) = 1.3e-13
Identities = 11/23 (47%), Positives = 13/23 (56%)
Query: 231 GY-SGRY----GGFNRGYDVTGD 248
GY SGRY GG+ GY + D
Sbjct: 111 GYGSGRYDSRPGGYGYGYGRSRD 133
Score = 37 (18.1 bits), Expect = 1.6e-13, Sum P(2) = 1.6e-13
Identities = 7/13 (53%), Positives = 9/13 (69%)
Query: 229 SLGYSGRYGGFNR 241
S YSG GG++R
Sbjct: 131 SRDYSGSQGGYDR 143
Score = 36 (17.7 bits), Expect = 2.1e-13, Sum P(2) = 2.1e-13
Identities = 10/22 (45%), Positives = 10/22 (45%)
Query: 227 PSSLGYS-GR---YGGFNRGYD 244
P GY GR Y G GYD
Sbjct: 121 PGGYGYGYGRSRDYSGSQGGYD 142
>UNIPROTKB|F1MH29 [details] [associations]
symbol:F1MH29 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR021662
Pfam:PF11627 GeneTree:ENSGT00550000074566 EMBL:DAAA02006340
IPI:IPI00839326 Ensembl:ENSBTAT00000046159 Uniprot:F1MH29
Length = 241
Score = 177 (67.4 bits), Expect = 1.3e-13, P = 1.3e-13
Identities = 44/115 (38%), Positives = 61/115 (53%)
Query: 1 MKDRKTGQPRGFGFVTYADPSVVDKVIEDT-HIINGKQVEIKRTIPK-GAVGSKDFKT-K 57
M D T RGF FVTYA VD + H ++ + VE KR + + G+ T K
Sbjct: 41 MTDPNTKCSRGFRFVTYATVEEVDAAMNARPHKVDRRVVEPKRGVSREGSQRPGAHLTVK 100
Query: 58 KIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVD 112
KIF GGI E +D+F + G ++ +IM D S+ + RGF F+TFD +VD
Sbjct: 101 KIFAGGIKEDTEERHLRDYFEKPGKIEVIEIMTDPSSGKKRGFAFVTFDDHDSVD 155
>UNIPROTKB|I3LNA4 [details] [associations]
symbol:LOC100621383 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00570000079202 OMA:PSISRIF EMBL:CU694468
Ensembl:ENSSSCT00000022360 Uniprot:I3LNA4
Length = 413
Score = 183 (69.5 bits), Expect = 1.5e-13, P = 1.5e-13
Identities = 44/135 (32%), Positives = 68/135 (50%)
Query: 2 KDRKTGQPRGFGFVTYADPSVVDKVIEDTHIINGKQVEIKRTIPKGAVGSKDFKTKKIFV 61
KD KTG +GFGFV + + KV+ H+I+G+ + K K + + +++K+FV
Sbjct: 136 KDIKTGHSKGFGFVRFTEYETQVKVMSQRHMIDGRWCDCKLPNSKQSP-DEPLRSRKVFV 194
Query: 62 GGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKL 121
G + DE + FF Q+G+V + I + R F F+TF +Q L G L
Sbjct: 195 GRCTEDMTADELQQFFCQYGEVVDVFIPKPF-----RAFAFVTFADDQVAQSLC--GEDL 247
Query: 122 ELAGAQVEVKKAEPK 136
+ G V + AEPK
Sbjct: 248 IIKGISVHISNAEPK 262
Score = 111 (44.1 bits), Expect = 0.00032, P = 0.00032
Identities = 22/54 (40%), Positives = 32/54 (59%)
Query: 55 KTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTE 108
KT + V G+P E + K++F FG+V Q+ +D T S+GFGF+ F TE
Sbjct: 101 KTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDIKTGHSKGFGFVRF-TE 153
>WB|WBGene00022235 [details] [associations]
symbol:sqd-1 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000003
"reproduction" evidence=IMP] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0000003 GO:GO:0003676 EMBL:FO081731
eggNOG:COG0724 GeneTree:ENSGT00700000104255 KO:K03102
RefSeq:NP_001023574.1 ProteinModelPortal:Q4W5P0 SMR:Q4W5P0
STRING:Q4W5P0 PaxDb:Q4W5P0 PRIDE:Q4W5P0 EnsemblMetazoa:Y73B6BL.6b.1
EnsemblMetazoa:Y73B6BL.6b.2 EnsemblMetazoa:Y73B6BL.6b.3
EnsemblMetazoa:Y73B6BL.6b.4 EnsemblMetazoa:Y73B6BL.6b.5
EnsemblMetazoa:Y73B6BL.6b.6 EnsemblMetazoa:Y73B6BL.6b.7
EnsemblMetazoa:Y73B6BL.6b.8 GeneID:177392 KEGG:cel:CELE_Y73B6BL.6
UCSC:Y73B6BL.6a.7 CTD:177392 WormBase:Y73B6BL.6b
HOGENOM:HOG000017794 InParanoid:Q4W5P0 OMA:GHQTGYK NextBio:896614
ArrayExpress:Q4W5P0 Uniprot:Q4W5P0
Length = 308
Score = 178 (67.7 bits), Expect = 2.0e-13, P = 2.0e-13
Identities = 46/140 (32%), Positives = 67/140 (47%)
Query: 3 DRKTGQPRGFGFVTYADPSVVDKVIEDTH-IINGKQVEIKRTIPKGAVGSKDFKTKKIFV 61
DR G+ RGF FV + + I GK VE+K P +K + KK+FV
Sbjct: 63 DRTNGRSRGFAFVEFTTGEGCKLALAAREQTIKGKSVEVK---P-----AKSRENKKVFV 114
Query: 62 GGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKL 121
GG+PS +E + + F QFG V + + D T R F FI F+ E++ D ++ K
Sbjct: 115 GGLPSDYSEQDLRSHFEQFGKVDDIEWPFDKQTKARRNFAFIVFEEEESADKASSQ-TKQ 173
Query: 122 ELAGAQVEVKKAEPKKPNLP 141
+ +VKKA P+ P
Sbjct: 174 TFGTRECDVKKAVPQGKRFP 193
Score = 164 (62.8 bits), Expect = 7.9e-12, P = 7.9e-12
Identities = 39/105 (37%), Positives = 56/105 (53%)
Query: 33 INGKQVEIKRTIPKGAVGSKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDH 92
ING E TI + +K + KKIFVGGI VN ++ F Q+G+V + Q+ D
Sbjct: 8 INGNASE---TIKENGHSTKGNEDKKIFVGGISPEVNNEDLSSHFTQYGEVAQAQVKYDR 64
Query: 93 STSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVKKAEPKK 137
+ RSRGF F+ F T + LA + + G VEVK A+ ++
Sbjct: 65 TNGRSRGFAFVEFTTGEGCKLALA-AREQTIKGKSVEVKPAKSRE 108
>UNIPROTKB|E2R771 [details] [associations]
symbol:RBM3 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104309 CTD:5935 KO:K13186 OMA:SDAMRAM
EMBL:AAEX03026334 RefSeq:XP_863171.1 ProteinModelPortal:E2R771
Ensembl:ENSCAFT00000024556 GeneID:609457 KEGG:cfa:609457
Uniprot:E2R771
Length = 162
Score = 151 (58.2 bits), Expect = 2.1e-13, Sum P(2) = 2.1e-13
Identities = 33/77 (42%), Positives = 45/77 (58%)
Query: 58 KIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITF-DTEQAVDDLLA 116
K+FVGG+ + +E +D F FG + E +++D T RSRGFGFITF D E A D + A
Sbjct: 7 KLFVGGLNFNTDEQALEDHFRSFGPISEVVVVKDRETQRSRGFGFITFTDPEHASDAMRA 66
Query: 117 KGNKLELAGAQVEVKKA 133
+ L G Q+ V A
Sbjct: 67 MNGE-SLDGRQIRVDHA 82
Score = 37 (18.1 bits), Expect = 2.1e-13, Sum P(2) = 2.1e-13
Identities = 10/18 (55%), Positives = 11/18 (61%)
Query: 231 GY-SGRY----GGFNRGY 243
GY SGRY GG+ GY
Sbjct: 111 GYGSGRYDSRPGGYGYGY 128
>MGI|MGI:1099460 [details] [associations]
symbol:Rbm3 "RNA binding motif protein 3" species:10090 "Mus
musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=ISO]
[GO:0005737 "cytoplasm" evidence=ISO] [GO:0006412 "translation"
evidence=IDA] [GO:0006417 "regulation of translation" evidence=IDA]
[GO:0006950 "response to stress" evidence=IEA] [GO:0009409
"response to cold" evidence=IDA] [GO:0015934 "large ribosomal
subunit" evidence=ISO] [GO:0030425 "dendrite" evidence=ISO]
[GO:0035196 "production of miRNAs involved in gene silencing by
miRNA" evidence=IDA] [GO:0042995 "cell projection" evidence=IEA]
[GO:0043023 "ribosomal large subunit binding" evidence=IPI]
[GO:0045727 "positive regulation of translation" evidence=ISO]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 MGI:MGI:1099460 GO:GO:0005634 GO:GO:0005737
GO:GO:0000166 GO:GO:0006412 GO:GO:0030425 GO:GO:0009409
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0045727 eggNOG:COG0724
HOVERGEN:HBG107480 HOGENOM:HOG000276232 OrthoDB:EOG4HHP40
GO:GO:0035196 GO:GO:0043023 CTD:5935 KO:K13186 EMBL:AB016424
EMBL:AY052560 EMBL:BC006580 IPI:IPI00130883 RefSeq:NP_001159882.1
RefSeq:NP_001159883.1 UniGene:Mm.128512 UniGene:Mm.360569
ProteinModelPortal:O89086 SMR:O89086 IntAct:O89086 STRING:O89086
PhosphoSite:O89086 REPRODUCTION-2DPAGE:IPI00130883 PaxDb:O89086
PRIDE:O89086 Ensembl:ENSMUST00000115615 Ensembl:ENSMUST00000115619
Ensembl:ENSMUST00000115621 GeneID:19652 KEGG:mmu:19652
NextBio:296916 Bgee:O89086 CleanEx:MM_RBM3 Genevestigator:O89086
GermOnline:ENSMUSG00000031167 Uniprot:O89086
Length = 153
Score = 150 (57.9 bits), Expect = 2.1e-13, Sum P(2) = 2.1e-13
Identities = 30/76 (39%), Positives = 42/76 (55%)
Query: 58 KIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAK 117
K+FVGG+ + +E +D F FG + E +++D T RSRGFGFITF + D +
Sbjct: 7 KLFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASDAMRA 66
Query: 118 GNKLELAGAQVEVKKA 133
N L G Q+ V A
Sbjct: 67 MNGESLDGRQIRVDHA 82
Score = 38 (18.4 bits), Expect = 2.1e-13, Sum P(2) = 2.1e-13
Identities = 11/23 (47%), Positives = 13/23 (56%)
Query: 231 GY-SGRY----GGFNRGYDVTGD 248
GY SGRY GG+ GY + D
Sbjct: 109 GYGSGRYDSRPGGYGYGYGRSRD 131
Score = 37 (18.1 bits), Expect = 2.6e-13, Sum P(2) = 2.6e-13
Identities = 7/13 (53%), Positives = 9/13 (69%)
Query: 229 SLGYSGRYGGFNR 241
S YSG GG++R
Sbjct: 129 SRDYSGSQGGYDR 141
Score = 36 (17.7 bits), Expect = 3.3e-13, Sum P(2) = 3.3e-13
Identities = 10/22 (45%), Positives = 10/22 (45%)
Query: 227 PSSLGYS-GR---YGGFNRGYD 244
P GY GR Y G GYD
Sbjct: 119 PGGYGYGYGRSRDYSGSQGGYD 140
>UNIPROTKB|G3V6P6 [details] [associations]
symbol:Rbm3 "Putative RNA-binding protein 3" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0006412
"translation" evidence=IEA] [GO:0009409 "response to cold"
evidence=IEA] [GO:0035196 "production of miRNAs involved in gene
silencing by miRNA" evidence=IEA] [GO:0043023 "ribosomal large
subunit binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:620145 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104309 CTD:5935 KO:K13186 OMA:SDAMRAM
RefSeq:NP_446148.1 UniGene:Rn.18057 GeneID:114488 KEGG:rno:114488
NextBio:618509 EMBL:CH474078 Ensembl:ENSRNOT00000007367
Uniprot:G3V6P6
Length = 156
Score = 150 (57.9 bits), Expect = 2.1e-13, Sum P(2) = 2.1e-13
Identities = 30/76 (39%), Positives = 42/76 (55%)
Query: 58 KIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAK 117
K+FVGG+ + +E +D F FG + E +++D T RSRGFGFITF + D +
Sbjct: 7 KLFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASDAMRA 66
Query: 118 GNKLELAGAQVEVKKA 133
N L G Q+ V A
Sbjct: 67 MNGESLDGRQIRVDHA 82
Score = 38 (18.4 bits), Expect = 2.1e-13, Sum P(2) = 2.1e-13
Identities = 11/23 (47%), Positives = 13/23 (56%)
Query: 231 GY-SGRY----GGFNRGYDVTGD 248
GY SGRY GG+ GY + D
Sbjct: 111 GYGSGRYDSRPGGYGYGYGRSRD 133
>TAIR|locus:2086325 [details] [associations]
symbol:AT3G15010 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005730 "nucleolus" evidence=IDA] [GO:0005634 "nucleus"
evidence=IDA] [GO:0006952 "defense response" evidence=IMP]
[GO:0008219 "cell death" evidence=IMP] [GO:0009693 "ethylene
biosynthetic process" evidence=IMP] [GO:0010150 "leaf senescence"
evidence=IMP] [GO:0005829 "cytosol" evidence=RCA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0009693
GO:GO:0006952 GO:GO:0005730 GO:GO:0000166 GO:GO:0008219
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0010150 EMBL:AP000370
HSSP:P09651 KO:K12741 eggNOG:NOG300400 EMBL:AY063846 EMBL:AY091228
EMBL:AK316731 IPI:IPI00519744 RefSeq:NP_188119.1 RefSeq:NP_974317.1
UniGene:At.27179 ProteinModelPortal:Q9LKA4 SMR:Q9LKA4 IntAct:Q9LKA4
PaxDb:Q9LKA4 PRIDE:Q9LKA4 EnsemblPlants:AT3G15010.1
EnsemblPlants:AT3G15010.2 GeneID:820730 KEGG:ath:AT3G15010
TAIR:At3g15010 HOGENOM:HOG000090575 InParanoid:Q9LKA4 OMA:MGAQYGG
PhylomeDB:Q9LKA4 ProtClustDB:CLSN2685088 ArrayExpress:Q9LKA4
Genevestigator:Q9LKA4 Uniprot:Q9LKA4
Length = 404
Score = 157 (60.3 bits), Expect = 2.2e-13, Sum P(2) = 2.2e-13
Identities = 46/150 (30%), Positives = 77/150 (51%)
Query: 3 DRKTGQPRGFGFVTY--ADPSVVDKVIEDTHIINGKQVEIKRTIPKG--AVGSK--DFKT 56
D+ TG+ +G+GFVT+ D +++ + E + I+G+ V + + G GS+ D
Sbjct: 109 DKVTGKSKGYGFVTFMHVDGALL-ALKEPSKKIDGR-VTVTQLAASGNQGTGSQIADISM 166
Query: 57 KKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLA 116
+KI+V +P + D + FM +GDV+E + D T +SRGF + T + LA
Sbjct: 167 RKIYVANVPFDMPADRLLNHFMAYGDVEEGPLGFDKVTGKSRGFALFVYKTAEGAQAALA 226
Query: 117 KGNKLELAGAQVEVKKA-EPKK---PNLPQ 142
K+ + G + K A + KK P +PQ
Sbjct: 227 DPVKV-IDGKHLNCKLAVDGKKGGKPGMPQ 255
Score = 106 (42.4 bits), Expect = 8.9e-05, Sum P(2) = 8.9e-05
Identities = 16/53 (30%), Positives = 32/53 (60%)
Query: 53 DFKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITF 105
D +K+F+ G+ + + + F +GD++E ++ D T +S+G+GF+TF
Sbjct: 71 DISQRKLFIRGLAADTTTEGLRSLFSSYGDLEEAIVILDKVTGKSKGYGFVTF 123
Score = 45 (20.9 bits), Expect = 2.2e-13, Sum P(2) = 2.2e-13
Identities = 10/19 (52%), Positives = 11/19 (57%)
Query: 229 SLGYSGRYGGFNRGYDVTG 247
S GY G YGG+ G TG
Sbjct: 312 SAGYGGHYGGYG-GPGGTG 329
Score = 38 (18.4 bits), Expect = 1.2e-12, Sum P(2) = 1.2e-12
Identities = 8/17 (47%), Positives = 9/17 (52%)
Query: 231 GYSGRYGGFNRGYDVTG 247
G +G YGG GY G
Sbjct: 326 GGTGVYGGLGGGYGGPG 342
>UNIPROTKB|E1BK61 [details] [associations]
symbol:E1BK61 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00550000074566 EMBL:DAAA02005585 IPI:IPI00689266
Ensembl:ENSBTAT00000016960 Uniprot:E1BK61
Length = 270
Score = 157 (60.3 bits), Expect = 2.3e-13, Sum P(2) = 2.3e-13
Identities = 44/139 (31%), Positives = 68/139 (48%)
Query: 1 MKDRKTGQPRGFGFVTYADPSVVDKVIEDTHIINGKQVEIKRTIPKGAVGSKD--FKTKK 58
M+ T RGFGFVT + + H ++ + VE KR + +G KK
Sbjct: 41 MRVPNTKHSRGFGFVTKPWWRSLAAMNARPHKVDERVVEPKRDVSRGDSQRPHAHLTVKK 100
Query: 59 IFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKG 118
IFVGGI E ++ F Q+G + + +IM D + + RGF F TFD +VD ++ +
Sbjct: 101 IFVGGIQEGTEEHHLRNNFEQYGKI-DIEIMTDRGSDKKRGFAFETFDDHDSVDKIVIQK 159
Query: 119 NKLELAGAQVEVKKAEPKK 137
+ G EV++A K+
Sbjct: 160 YHT-VNGHNCEVREALSKQ 177
Score = 35 (17.4 bits), Expect = 2.3e-13, Sum P(2) = 2.3e-13
Identities = 10/20 (50%), Positives = 11/20 (55%)
Query: 228 SSLGYSGRYGGFNRGYDVTG 247
SS G G YGG GY+ G
Sbjct: 183 SSSG--GGYGGSGDGYNGFG 200
>UNIPROTKB|F1MW51 [details] [associations]
symbol:F1MW51 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00550000074566 EMBL:DAAA02008023 IPI:IPI00696055
Ensembl:ENSBTAT00000016590 Uniprot:F1MW51
Length = 274
Score = 175 (66.7 bits), Expect = 2.3e-13, P = 2.3e-13
Identities = 49/149 (32%), Positives = 74/149 (49%)
Query: 2 KDRKTGQPRGFGFVTYADPSVVDKVIEDTHIINGKQVEIKRTIPK--GAVGSKDFKTKKI 59
+D + RGFGFVTYA V++V H+ + + VE K I + KK+
Sbjct: 47 RDPNAKRSRGFGFVTYA---TVEEVKGRPHV-DERVVEPKWAISREDSQRPGAHLPVKKV 102
Query: 60 FVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGN 119
FVGGI E +D+F Q+G ++ +IM D + + RGF FI FD ++D ++ +
Sbjct: 103 FVGGIKEDTEEHHLRDYFEQYGRIEVIEIMTDQGSGK-RGFAFILFDDHDSIDKIVIQ-- 159
Query: 120 KLELA-GAQVEVKKAEPKKPNLPQPSYRR 147
K G EV+KA K+ S +R
Sbjct: 160 KYHTGNGLNCEVRKALSKQEMASASSSQR 188
Score = 107 (42.7 bits), Expect = 0.00048, P = 0.00048
Identities = 19/55 (34%), Positives = 33/55 (60%)
Query: 57 KKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAV 111
+K+F+GG+ ++ + F Q G + + + RD + RSRGFGF+T+ T + V
Sbjct: 14 RKLFIGGLSFETTDESLRSRFEQGGTLTDCVVRRDPNAKRSRGFGFVTYATVEEV 68
>RGD|1310906 [details] [associations]
symbol:Tardbp "TAR DNA binding protein" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003690 "double-stranded DNA binding" evidence=IEA;ISO]
[GO:0003723 "RNA binding" evidence=ISO] [GO:0003730 "mRNA 3'-UTR
binding" evidence=IEA;ISO] [GO:0005634 "nucleus" evidence=ISO;IDA]
[GO:0005726 "perichromatin fibrils" evidence=IDA] [GO:0005737
"cytoplasm" evidence=IDA] [GO:0008380 "RNA splicing"
evidence=IEA;ISO] [GO:0016607 "nuclear speck" evidence=IDA]
[GO:0034976 "response to endoplasmic reticulum stress"
evidence=IEP] [GO:0035061 "interchromatin granule" evidence=IDA]
[GO:0043922 "negative regulation by host of viral transcription"
evidence=IEA;ISO] [GO:0070935 "3'-UTR-mediated mRNA stabilization"
evidence=IEA;ISO] [GO:0005730 "nucleolus" evidence=ISO]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 RGD:1310906 GO:GO:0005737 GO:GO:0000166 GO:GO:0016607
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0034976 EMBL:CH473968
GO:GO:0005726 GO:GO:0035061 CTD:23435 GeneTree:ENSGT00570000079202
EMBL:BC083752 RefSeq:NP_001011979.1 UniGene:Rn.2633
Ensembl:ENSRNOT00000049822 GeneID:298648 KEGG:rno:298648
Uniprot:I6L9G6
Length = 285
Score = 176 (67.0 bits), Expect = 2.3e-13, P = 2.3e-13
Identities = 42/135 (31%), Positives = 68/135 (50%)
Query: 2 KDRKTGQPRGFGFVTYADPSVVDKVIEDTHIINGKQVEIKRTIPKGAVGSKDFKTKKIFV 61
KD KTG +GFGFV + + KV+ H+I+G+ + K K + + +++K+FV
Sbjct: 137 KDLKTGHSKGFGFVRFTEYETQVKVMSQRHMIDGRWCDCKLPNSKQSP-DEPLRSRKVFV 195
Query: 62 GGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKL 121
G + +E + FF Q+G+V + I + R F F+TF ++ L G L
Sbjct: 196 GRCTEDMTAEELQQFFCQYGEVVDVFIPKPF-----RAFAFVTFADDKVAQSLC--GEDL 248
Query: 122 ELAGAQVEVKKAEPK 136
+ G V + AEPK
Sbjct: 249 IIKGISVHISNAEPK 263
Score = 115 (45.5 bits), Expect = 5.0e-05, P = 5.0e-05
Identities = 23/54 (42%), Positives = 32/54 (59%)
Query: 55 KTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTE 108
KT + V G+P E + KD+F FG+V Q+ +D T S+GFGF+ F TE
Sbjct: 102 KTSDLIVLGLPWKTTEQDLKDYFSTFGEVLMVQVKKDLKTGHSKGFGFVRF-TE 154
>UNIPROTKB|F1M165 [details] [associations]
symbol:F1M165 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR021662
Pfam:PF11627 IPI:IPI00362409 Ensembl:ENSRNOT00000029622
Uniprot:F1M165
Length = 288
Score = 155 (59.6 bits), Expect = 2.5e-13, Sum P(2) = 2.5e-13
Identities = 45/149 (30%), Positives = 70/149 (46%)
Query: 1 MKDRKTGQPRGFGFVTYADPSVVDKVIEDT-HIINGKQVEIKRTIPKGAVGSKDFKTKKI 59
M+D T + RG GF TY +D + H ++G+ V + + GA T KI
Sbjct: 47 MRDPNTERSRGSGFDTYTTVEEMDAAMNARPHKVDGRVVSREDSQRPGA-----HLTVKI 101
Query: 60 F-VGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKG 118
F V GI E +D+F Q+ ++ +IM D + + R F F+TFD +VD + +
Sbjct: 102 FIVSGIKEDTEEHHLRDYFEQYRKIEVIEIMTDRGSRKKRDFAFVTFDEHDSVDKIFIQK 161
Query: 119 NKLELAGAQVEVKKAEPKKPNLPQPSYRR 147
+ G EV+KA K+ S +R
Sbjct: 162 YHT-VNGHNCEVRKALSKQEMASASSSQR 189
Score = 108 (43.1 bits), Expect = 6.0e-05, Sum P(2) = 6.0e-05
Identities = 22/67 (32%), Positives = 40/67 (59%)
Query: 57 KKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLL- 115
+K+F+GG+ E+ + F Q+ + +MRD +T RSRG GF T+ T + +D +
Sbjct: 15 RKLFIGGLSFRTTEESLRSHFEQWATLITCVVMRDPNTERSRGSGFDTYTTVEEMDAAMN 74
Query: 116 AKGNKLE 122
A+ +K++
Sbjct: 75 ARPHKVD 81
Score = 39 (18.8 bits), Expect = 2.5e-13, Sum P(2) = 2.5e-13
Identities = 8/17 (47%), Positives = 9/17 (52%)
Query: 228 SSLGYSGRYGGFNRGYD 244
S G SG Y +N G D
Sbjct: 222 SGYGGSGSYDSYNNGGD 238
>UNIPROTKB|E1C240 [details] [associations]
symbol:ELAVL2 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:RAVENGP EMBL:AADN02057847
EMBL:AADN02057848 EMBL:AADN02057849 EMBL:AADN02057850
IPI:IPI00584568 ProteinModelPortal:E1C240
Ensembl:ENSGALT00000025475 Uniprot:E1C240
Length = 388
Score = 180 (68.4 bits), Expect = 2.7e-13, P = 2.7e-13
Identities = 47/157 (29%), Positives = 76/157 (48%)
Query: 1 MKDRKTGQPRGFGFVTYADPSVVDKVIEDTHIINGKQVEIKRT-IPKGAVGSKDFKTKKI 59
++D+ TGQ G+GFV Y DP +K I + +NG +++ K + S + +
Sbjct: 99 VRDKITGQSLGYGFVNYVDPKDAEKAI---NTLNGLRLQTKTIKVSYARPSSASIRDANL 155
Query: 60 FVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFD----TEQAVDDLL 115
+V G+P ++ + E + F Q+G + +I+ D T SRG GFI FD E+A+ L
Sbjct: 156 YVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGMSRGVGFIRFDKRIEAEEAIKGL- 214
Query: 116 AKGNKLELAGAQVEVKKAEPKKPNLPQPSYRR-YNNP 151
G K A + VK A Q + Y++P
Sbjct: 215 -NGQKPPAATEPITVKFANNPSQKTNQAILSQLYHSP 250
Score = 118 (46.6 bits), Expect = 3.6e-05, P = 3.6e-05
Identities = 29/100 (29%), Positives = 53/100 (53%)
Query: 45 PKGAVGSKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFIT 104
P + ++D KT I V +P S+ ++E K F G+++ +++RD T +S G+GF+
Sbjct: 56 PIDSGNTEDSKTNLI-VNYLPQSMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVN 114
Query: 105 F----DTEQAVDDLLAKGNKLELAGAQVEVKKAEPKKPNL 140
+ D E+A++ L N L L ++V A P ++
Sbjct: 115 YVDPKDAEKAINTL----NGLRLQTKTIKVSYARPSSASI 150
>UNIPROTKB|J3KTC1 [details] [associations]
symbol:MSI2 "RNA-binding protein Musashi homolog 2"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
HGNC:HGNC:18585 ChiTaRS:MSI2 EMBL:AC005325 EMBL:AC007431
EMBL:AC015883 EMBL:AC091181 Ensembl:ENST00000579590 Uniprot:J3KTC1
Length = 141
Score = 174 (66.3 bits), Expect = 2.7e-13, P = 2.7e-13
Identities = 36/84 (42%), Positives = 54/84 (64%)
Query: 1 MKDRKTGQPRGFGFVTYADPSVVDKVI-EDTHIINGKQVEIKRTIPKGAVGSKDFKTKKI 59
M+D T + RGFGFVT+ADP+ VDKV+ + H ++ K ++ K P+ A +TKKI
Sbjct: 49 MRDPTTKRSRGFGFVTFADPASVDKVLGQPHHELDSKTIDPKVAFPRRAQPKMVTRTKKI 108
Query: 60 FVGGIPSSVNEDEFKDFFMQFGDV 83
FVGG+ ++ ++ K +F QFG V
Sbjct: 109 FVGGLSANTVVEDVKQYFEQFGKV 132
Score = 167 (63.8 bits), Expect = 1.5e-12, P = 1.5e-12
Identities = 31/82 (37%), Positives = 53/82 (64%)
Query: 56 TKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLL 115
+ K+F+GG+ + D +D+F +FG+++E +MRD +T RSRGFGF+TF +VD +L
Sbjct: 16 SSKMFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRSRGFGFVTFADPASVDKVL 75
Query: 116 AKGNKLELAGAQVEVKKAEPKK 137
+ + EL ++ K A P++
Sbjct: 76 GQPHH-ELDSKTIDPKVAFPRR 96
>UNIPROTKB|F1M6C7 [details] [associations]
symbol:F1M6C7 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104376 IPI:IPI00370270
Ensembl:ENSRNOT00000014756 Uniprot:F1M6C7
Length = 273
Score = 174 (66.3 bits), Expect = 3.0e-13, P = 3.0e-13
Identities = 40/118 (33%), Positives = 60/118 (50%)
Query: 1 MKDRKTGQPRGFGFVTYADPSVVDKVIEDT-HIINGKQVEIKRTIPKGAVGSKD--FKTK 57
M+D T + RGFGFVTY VD + H ++G VE KR + + S K
Sbjct: 37 MRDPNTKRSRGFGFVTYTTVEEVDAAMNARPHKVDGSFVEPKRAVSREDSQSPGAHLTVK 96
Query: 58 KIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLL 115
+I VGGI E +D+F +G ++ +IM D + + F F+TFD +VD ++
Sbjct: 97 EISVGGIKEDTEEHHLRDYFEHYGKIEVIEIMTDRGSGKKE-FAFVTFDDHDSVDKIV 153
Score = 129 (50.5 bits), Expect = 3.7e-07, P = 3.7e-07
Identities = 28/78 (35%), Positives = 48/78 (61%)
Query: 57 KKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLL- 115
+K+F+GG+ + + F Q+ + + MRD +T RSRGFGF+T+ T + VD +
Sbjct: 5 RKLFIGGLSFKTTNESLRSHFEQWRTLTDCVEMRDPNTKRSRGFGFVTYTTVEEVDAAMN 64
Query: 116 AKGNKLELAGAQVEVKKA 133
A+ +K++ G+ VE K+A
Sbjct: 65 ARPHKVD--GSFVEPKRA 80
>UNIPROTKB|D4A7H6 [details] [associations]
symbol:Elavl2 "ELAV-like protein 2" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
RGD:628611 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
TIGRFAMs:TIGR01661 IPI:IPI00192584 ProteinModelPortal:D4A7H6
SMR:D4A7H6 Ensembl:ENSRNOT00000009035 ArrayExpress:D4A7H6
Uniprot:D4A7H6
Length = 346
Score = 178 (67.7 bits), Expect = 3.2e-13, P = 3.2e-13
Identities = 53/164 (32%), Positives = 80/164 (48%)
Query: 1 MKDRKTGQPRGFGFVTYADPSVVDKVIEDTHIINGKQVEIKRT-IPKGAVGSKDFKTKKI 59
++D+ TGQ G+GFV Y DP +K I + +NG +++ K + S + +
Sbjct: 71 VRDKITGQSLGYGFVNYIDPKDAEKAI---NTLNGLRLQTKTIKVSYARPSSASIRDANL 127
Query: 60 FVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFD----TEQAVDDLL 115
+V G+P ++ + E + F Q+G + +I+ D T SRG GFI FD E+A+ L
Sbjct: 128 YVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGL- 186
Query: 116 AKGNKLELAGAQVEVKKAE-P-KKPN------LPQPSYRRYNNP 151
G K A + VK A P +K N L Q RRY P
Sbjct: 187 -NGQKPPGATEPITVKFANNPSQKTNQAILSQLYQSPNRRYPGP 229
Score = 116 (45.9 bits), Expect = 5.3e-05, P = 5.3e-05
Identities = 28/100 (28%), Positives = 53/100 (53%)
Query: 45 PKGAVGSKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFIT 104
P + ++D KT I V +P ++ ++E K F G+++ +++RD T +S G+GF+
Sbjct: 28 PVDSGNTEDSKTNLI-VNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVN 86
Query: 105 F----DTEQAVDDLLAKGNKLELAGAQVEVKKAEPKKPNL 140
+ D E+A++ L N L L ++V A P ++
Sbjct: 87 YIDPKDAEKAINTL----NGLRLQTKTIKVSYARPSSASI 122
>TAIR|locus:2049359 [details] [associations]
symbol:GRP7 "AT2G21660" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=ISS;IDA] [GO:0005739
"mitochondrion" evidence=ISM] [GO:0005634 "nucleus"
evidence=ISS;IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0003690
"double-stranded DNA binding" evidence=IDA] [GO:0003697
"single-stranded DNA binding" evidence=IDA] [GO:0009409 "response
to cold" evidence=IGI;IEP] [GO:0009414 "response to water
deprivation" evidence=IEP] [GO:0009651 "response to salt stress"
evidence=IEP;RCA] [GO:0046686 "response to cadmium ion"
evidence=IEP;RCA] [GO:0010501 "RNA secondary structure unwinding"
evidence=IDA] [GO:0032508 "DNA duplex unwinding" evidence=IDA]
[GO:0045087 "innate immune response" evidence=IMP;IDA] [GO:0005777
"peroxisome" evidence=IDA] [GO:0006406 "mRNA export from nucleus"
evidence=IMP] [GO:0006970 "response to osmotic stress"
evidence=IMP] [GO:0010119 "regulation of stomatal movement"
evidence=IMP] [GO:0009507 "chloroplast" evidence=IDA] [GO:0010228
"vegetative to reproductive phase transition of meristem"
evidence=RCA;IMP] [GO:0010043 "response to zinc ion" evidence=IEP]
[GO:0005829 "cytosol" evidence=IDA] [GO:0009506 "plasmodesma"
evidence=IDA] [GO:0048046 "apoplast" evidence=IDA] [GO:0006094
"gluconeogenesis" evidence=RCA] [GO:0006096 "glycolysis"
evidence=RCA] [GO:0006833 "water transport" evidence=RCA]
[GO:0006972 "hyperosmotic response" evidence=RCA] [GO:0007030
"Golgi organization" evidence=RCA] [GO:0007623 "circadian rhythm"
evidence=IEP;RCA;TAS] [GO:0009266 "response to temperature
stimulus" evidence=RCA] [GO:0000380 "alternative mRNA splicing, via
spliceosome" evidence=IMP] [GO:0003729 "mRNA binding" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005829 GO:GO:0009506 GO:GO:0005634
GO:GO:0009507 GO:GO:0046686 EMBL:CP002685 GenomeReviews:CT485783_GR
GO:GO:0005777 GO:GO:0010119 GO:GO:0000166 GO:GO:0010043
GO:GO:0048046 GO:GO:0007623 GO:GO:0009651 GO:GO:0009409
GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0045087 GO:GO:0003690
GO:GO:0003697 GO:GO:0006406 GO:GO:0010228 eggNOG:COG0724
GO:GO:0000380 HOGENOM:HOG000276232 GO:GO:0010501 GO:GO:0032508
EMBL:AC007119 UniGene:At.22672 UniGene:At.23628 EMBL:Z14987
EMBL:L00648 EMBL:L04172 EMBL:AF428381 EMBL:AY054284 EMBL:AY042826
EMBL:AY072523 EMBL:AK318968 EMBL:AY085214 IPI:IPI00523161
IPI:IPI00542675 PIR:S30147 RefSeq:NP_179760.1 UniGene:At.24279
UniGene:At.72988 ProteinModelPortal:Q03250 SMR:Q03250 IntAct:Q03250
MINT:MINT-1163877 STRING:Q03250 PaxDb:Q03250 PRIDE:Q03250
ProMEX:Q03250 EnsemblPlants:AT2G21660.1 GeneID:816705
KEGG:ath:AT2G21660 TAIR:At2g21660 InParanoid:Q03250 OMA:SQHEDGH
ProtClustDB:CLSN2913158 Genevestigator:Q03250 Uniprot:Q03250
Length = 176
Score = 150 (57.9 bits), Expect = 3.3e-13, Sum P(2) = 3.3e-13
Identities = 29/79 (36%), Positives = 48/79 (60%)
Query: 58 KIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAK 117
+ FVGG+ + ++ + F Q+GDV + +I+ D T RSRGFGF+TF E+A+ D +
Sbjct: 9 RCFVGGLAWATDDRALETAFAQYGDVIDSKIINDRETGRSRGFGFVTFKDEKAMKDAIEG 68
Query: 118 GNKLELAGAQVEVKKAEPK 136
N +L G + V +A+ +
Sbjct: 69 MNGQDLDGRSITVNEAQSR 87
Score = 36 (17.7 bits), Expect = 3.3e-13, Sum P(2) = 3.3e-13
Identities = 8/13 (61%), Positives = 10/13 (76%)
Query: 231 GYSGRYGGFN-RG 242
GYSG GG++ RG
Sbjct: 130 GYSGGGGGYSSRG 142
>UNIPROTKB|Q28IQ9 [details] [associations]
symbol:cirbp "Cold-inducible RNA-binding protein"
species:8364 "Xenopus (Silurana) tropicalis" [GO:0003729 "mRNA
binding" evidence=ISS] [GO:0003730 "mRNA 3'-UTR binding"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISS] [GO:0005737
"cytoplasm" evidence=ISS] [GO:0007369 "gastrulation" evidence=ISS]
[GO:0009409 "response to cold" evidence=ISS] [GO:0009790 "embryo
development" evidence=ISS] [GO:0016477 "cell migration"
evidence=ISS] [GO:0019899 "enzyme binding" evidence=ISS]
[GO:0022008 "neurogenesis" evidence=ISS] [GO:0045727 "positive
regulation of translation" evidence=ISS] [GO:0048255 "mRNA
stabilization" evidence=ISS] [GO:0048793 "pronephros development"
evidence=ISS] [GO:0060212 "negative regulation of
nuclear-transcribed mRNA poly(A) tail shortening" evidence=ISS]
[GO:0005840 "ribosome" evidence=ISS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005737 GO:GO:0005654 GO:GO:0016477
GO:GO:0022008 GO:GO:0000166 GO:GO:0009409 Gene3D:3.30.70.330
GO:GO:0019899 GO:GO:0048255 GO:GO:0003730 GO:GO:0045727
GO:GO:0007369 eggNOG:COG0724 GO:GO:0048793 HOVERGEN:HBG107480
GO:GO:0060212 KO:K13195 CTD:1153 HOGENOM:HOG000276232 EMBL:CR760272
RefSeq:NP_001017228.1 UniGene:Str.47654 ProteinModelPortal:Q28IQ9
SMR:Q28IQ9 STRING:Q28IQ9 GeneID:549982 KEGG:xtr:549982
Xenbase:XB-GENE-492781 Uniprot:Q28IQ9
Length = 166
Score = 148 (57.2 bits), Expect = 3.3e-13, Sum P(2) = 3.3e-13
Identities = 33/90 (36%), Positives = 51/90 (56%)
Query: 58 KIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDT-EQAVDDLLA 116
K+FVGG+ E+ + F ++G V E +++D + RSRGFGF+TF+ E A D ++A
Sbjct: 7 KLFVGGLNFETTEESLEQVFSKYGQVAEVVVVKDRESKRSRGFGFVTFENPEDAKDAMMA 66
Query: 117 KGNKLELAGAQVEVKKAEPKKPNLPQPSYR 146
K + G Q+ V +A K N + YR
Sbjct: 67 MNGK-SVDGRQIRVDQAG-KSSNDRRGGYR 94
Score = 38 (18.4 bits), Expect = 3.3e-13, Sum P(2) = 3.3e-13
Identities = 8/13 (61%), Positives = 9/13 (69%)
Query: 231 GYSGRYGGFNRGY 243
G GR GG +RGY
Sbjct: 106 GGRGRGGGGDRGY 118
>ZFIN|ZDB-GENE-030131-5841 [details] [associations]
symbol:cirbp "cold inducible RNA binding protein"
species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005575 "cellular_component" evidence=ND] [GO:0009409 "response
to cold" evidence=IDA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-030131-5841 GO:GO:0000166 GO:GO:0009409
Gene3D:3.30.70.330 GO:GO:0003676 GeneTree:ENSGT00700000104309
EMBL:BX649404 IPI:IPI00758644 PRIDE:F1R6L3
Ensembl:ENSDART00000105405 ArrayExpress:F1R6L3 Bgee:F1R6L3
Uniprot:F1R6L3
Length = 224
Score = 145 (56.1 bits), Expect = 3.3e-13, Sum P(2) = 3.3e-13
Identities = 25/76 (32%), Positives = 44/76 (57%)
Query: 58 KIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAK 117
K+F+GG+ E ++ F ++G + + ++RD T RSRGFGF+TF+ + D +A
Sbjct: 24 KLFIGGLSYDTTEQSLEEAFSKYGTIAKVDVIRDRETDRSRGFGFVTFENPEDAKDAMAA 83
Query: 118 GNKLELAGAQVEVKKA 133
N ++ G + V +A
Sbjct: 84 MNGKQVDGRMIRVDEA 99
Score = 41 (19.5 bits), Expect = 3.3e-13, Sum P(2) = 3.3e-13
Identities = 7/12 (58%), Positives = 9/12 (75%)
Query: 231 GYSGRYGGFNRG 242
GYS R GG++ G
Sbjct: 183 GYSNRSGGYSSG 194
Score = 38 (18.4 bits), Expect = 6.8e-13, Sum P(2) = 6.8e-13
Identities = 8/15 (53%), Positives = 9/15 (60%)
Query: 229 SLGYSGRYGGFNRGY 243
S G YGG +RGY
Sbjct: 149 SYGGDRSYGGGDRGY 163
>UNIPROTKB|Q12926 [details] [associations]
symbol:ELAVL2 "ELAV-like protein 2" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0005515
"protein binding" evidence=IPI] [GO:0003730 "mRNA 3'-UTR binding"
evidence=TAS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=TAS] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0006355 GO:GO:0000166
Gene3D:3.30.70.330 EMBL:CH471071 GO:GO:0003730 eggNOG:COG0724
HOVERGEN:HBG002295 HOGENOM:HOG000231162 TIGRFAMs:TIGR01661
EMBL:U12431 EMBL:U29943 EMBL:AB209294 EMBL:AL161628 EMBL:AL445623
EMBL:BC030692 IPI:IPI00030250 IPI:IPI00219967 PIR:I38726 PIR:I39077
RefSeq:NP_001164666.1 RefSeq:NP_001164668.1 RefSeq:NP_004423.2
UniGene:Hs.166109 ProteinModelPortal:Q12926 SMR:Q12926
STRING:Q12926 PhosphoSite:Q12926 DMDM:93141258 PaxDb:Q12926
PRIDE:Q12926 DNASU:1993 Ensembl:ENST00000223951
Ensembl:ENST00000380110 Ensembl:ENST00000380117
Ensembl:ENST00000397312 Ensembl:ENST00000544538 GeneID:1993
KEGG:hsa:1993 UCSC:uc003zps.3 UCSC:uc003zpu.3 CTD:1993
GeneCards:GC09M023690 HGNC:HGNC:3313 HPA:CAB022222 MIM:601673
neXtProt:NX_Q12926 PharmGKB:PA27741 InParanoid:Q12926 KO:K13208
OrthoDB:EOG4JHCFV PhylomeDB:Q12926 GenomeRNAi:1993 NextBio:8059
ArrayExpress:Q12926 Bgee:Q12926 CleanEx:HS_ELAVL2
Genevestigator:Q12926 GermOnline:ENSG00000107105 Uniprot:Q12926
Length = 359
Score = 178 (67.7 bits), Expect = 3.6e-13, P = 3.6e-13
Identities = 53/164 (32%), Positives = 80/164 (48%)
Query: 1 MKDRKTGQPRGFGFVTYADPSVVDKVIEDTHIINGKQVEIKRT-IPKGAVGSKDFKTKKI 59
++D+ TGQ G+GFV Y DP +K I + +NG +++ K + S + +
Sbjct: 71 VRDKITGQSLGYGFVNYIDPKDAEKAI---NTLNGLRLQTKTIKVSYARPSSASIRDANL 127
Query: 60 FVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFD----TEQAVDDLL 115
+V G+P ++ + E + F Q+G + +I+ D T SRG GFI FD E+A+ L
Sbjct: 128 YVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGL- 186
Query: 116 AKGNKLELAGAQVEVKKAE-P-KKPN------LPQPSYRRYNNP 151
G K A + VK A P +K N L Q RRY P
Sbjct: 187 -NGQKPPGATEPITVKFANNPSQKTNQAILSQLYQSPNRRYPGP 229
Score = 116 (45.9 bits), Expect = 5.7e-05, P = 5.7e-05
Identities = 28/100 (28%), Positives = 53/100 (53%)
Query: 45 PKGAVGSKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFIT 104
P + ++D KT I V +P ++ ++E K F G+++ +++RD T +S G+GF+
Sbjct: 28 PVDSGNTEDSKTNLI-VNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVN 86
Query: 105 F----DTEQAVDDLLAKGNKLELAGAQVEVKKAEPKKPNL 140
+ D E+A++ L N L L ++V A P ++
Sbjct: 87 YIDPKDAEKAINTL----NGLRLQTKTIKVSYARPSSASI 122
>RGD|628611 [details] [associations]
symbol:Elavl2 "ELAV (embryonic lethal, abnormal vision,
Drosophila)-like 2 (Hu antigen B)" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
RGD:628611 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
eggNOG:COG0724 HOVERGEN:HBG002295 HOGENOM:HOG000231162
TIGRFAMs:TIGR01661 OrthoDB:EOG4JHCFV EMBL:AB098713 IPI:IPI00782044
UniGene:Rn.12662 ProteinModelPortal:Q8CH84 SMR:Q8CH84 STRING:Q8CH84
PhosphoSite:Q8CH84 UCSC:RGD:628611 InParanoid:Q8CH84 NextBio:625201
ArrayExpress:Q8CH84 Genevestigator:Q8CH84
GermOnline:ENSRNOG00000006853 Uniprot:Q8CH84
Length = 359
Score = 178 (67.7 bits), Expect = 3.6e-13, P = 3.6e-13
Identities = 53/164 (32%), Positives = 80/164 (48%)
Query: 1 MKDRKTGQPRGFGFVTYADPSVVDKVIEDTHIINGKQVEIKRT-IPKGAVGSKDFKTKKI 59
++D+ TGQ G+GFV Y DP +K I + +NG +++ K + S + +
Sbjct: 71 VRDKITGQSLGYGFVNYIDPKDAEKAI---NTLNGLRLQTKTIKVSYARPSSASIRDANL 127
Query: 60 FVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFD----TEQAVDDLL 115
+V G+P ++ + E + F Q+G + +I+ D T SRG GFI FD E+A+ L
Sbjct: 128 YVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGL- 186
Query: 116 AKGNKLELAGAQVEVKKAE-P-KKPN------LPQPSYRRYNNP 151
G K A + VK A P +K N L Q RRY P
Sbjct: 187 -NGQKPPGATEPITVKFANNPSQKTNQAILSQLYQSPNRRYPGP 229
Score = 109 (43.4 bits), Expect = 0.00046, P = 0.00046
Identities = 27/100 (27%), Positives = 52/100 (52%)
Query: 45 PKGAVGSKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFIT 104
P + ++D KT I +P ++ ++E K F G+++ +++RD T +S G+GF+
Sbjct: 28 PVDSGNTEDSKTNLID-NYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVN 86
Query: 105 F----DTEQAVDDLLAKGNKLELAGAQVEVKKAEPKKPNL 140
+ D E+A++ L N L L ++V A P ++
Sbjct: 87 YIDPKDAEKAINTL----NGLRLQTKTIKVSYARPSSASI 122
>UNIPROTKB|Q8CH84 [details] [associations]
symbol:Elavl2 "ELAV-like protein 2" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
RGD:628611 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
eggNOG:COG0724 HOVERGEN:HBG002295 HOGENOM:HOG000231162
TIGRFAMs:TIGR01661 OrthoDB:EOG4JHCFV EMBL:AB098713 IPI:IPI00782044
UniGene:Rn.12662 ProteinModelPortal:Q8CH84 SMR:Q8CH84 STRING:Q8CH84
PhosphoSite:Q8CH84 UCSC:RGD:628611 InParanoid:Q8CH84 NextBio:625201
ArrayExpress:Q8CH84 Genevestigator:Q8CH84
GermOnline:ENSRNOG00000006853 Uniprot:Q8CH84
Length = 359
Score = 178 (67.7 bits), Expect = 3.6e-13, P = 3.6e-13
Identities = 53/164 (32%), Positives = 80/164 (48%)
Query: 1 MKDRKTGQPRGFGFVTYADPSVVDKVIEDTHIINGKQVEIKRT-IPKGAVGSKDFKTKKI 59
++D+ TGQ G+GFV Y DP +K I + +NG +++ K + S + +
Sbjct: 71 VRDKITGQSLGYGFVNYIDPKDAEKAI---NTLNGLRLQTKTIKVSYARPSSASIRDANL 127
Query: 60 FVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFD----TEQAVDDLL 115
+V G+P ++ + E + F Q+G + +I+ D T SRG GFI FD E+A+ L
Sbjct: 128 YVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGL- 186
Query: 116 AKGNKLELAGAQVEVKKAE-P-KKPN------LPQPSYRRYNNP 151
G K A + VK A P +K N L Q RRY P
Sbjct: 187 -NGQKPPGATEPITVKFANNPSQKTNQAILSQLYQSPNRRYPGP 229
Score = 109 (43.4 bits), Expect = 0.00046, P = 0.00046
Identities = 27/100 (27%), Positives = 52/100 (52%)
Query: 45 PKGAVGSKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFIT 104
P + ++D KT I +P ++ ++E K F G+++ +++RD T +S G+GF+
Sbjct: 28 PVDSGNTEDSKTNLID-NYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVN 86
Query: 105 F----DTEQAVDDLLAKGNKLELAGAQVEVKKAEPKKPNL 140
+ D E+A++ L N L L ++V A P ++
Sbjct: 87 YIDPKDAEKAINTL----NGLRLQTKTIKVSYARPSSASI 122
>MGI|MGI:1100887 [details] [associations]
symbol:Elavl2 "ELAV (embryonic lethal, abnormal vision,
Drosophila)-like 2 (Hu antigen B)" species:10090 "Mus musculus"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 MGI:MGI:1100887 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 eggNOG:COG0724 HOVERGEN:HBG002295
HOGENOM:HOG000231162 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 CTD:1993 KO:K13208 EMBL:U29088
IPI:IPI00121676 PIR:JC6057 RefSeq:NP_034616.1 UniGene:Mm.318042
ProteinModelPortal:Q60899 SMR:Q60899 STRING:Q60899
PhosphoSite:Q60899 PaxDb:Q60899 PRIDE:Q60899
Ensembl:ENSMUST00000008633 GeneID:15569 KEGG:mmu:15569
InParanoid:Q60899 NextBio:288546 Bgee:Q60899 Genevestigator:Q60899
GermOnline:ENSMUSG00000008489 Uniprot:Q60899
Length = 360
Score = 178 (67.7 bits), Expect = 3.6e-13, P = 3.6e-13
Identities = 53/164 (32%), Positives = 80/164 (48%)
Query: 1 MKDRKTGQPRGFGFVTYADPSVVDKVIEDTHIINGKQVEIKRT-IPKGAVGSKDFKTKKI 59
++D+ TGQ G+GFV Y DP +K I + +NG +++ K + S + +
Sbjct: 71 VRDKITGQSLGYGFVNYIDPKDAEKAI---NTLNGLRLQTKTIKVSYARPSSASIRDANL 127
Query: 60 FVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFD----TEQAVDDLL 115
+V G+P ++ + E + F Q+G + +I+ D T SRG GFI FD E+A+ L
Sbjct: 128 YVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGL- 186
Query: 116 AKGNKLELAGAQVEVKKAE-P-KKPN------LPQPSYRRYNNP 151
G K A + VK A P +K N L Q RRY P
Sbjct: 187 -NGQKPPGATEPITVKFANNPSQKTNQAILSQLYQSPNRRYPGP 229
Score = 116 (45.9 bits), Expect = 5.7e-05, P = 5.7e-05
Identities = 28/100 (28%), Positives = 53/100 (53%)
Query: 45 PKGAVGSKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFIT 104
P + ++D KT I V +P ++ ++E K F G+++ +++RD T +S G+GF+
Sbjct: 28 PVDSGNTEDSKTNLI-VNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVN 86
Query: 105 F----DTEQAVDDLLAKGNKLELAGAQVEVKKAEPKKPNL 140
+ D E+A++ L N L L ++V A P ++
Sbjct: 87 YIDPKDAEKAINTL----NGLRLQTKTIKVSYARPSSASI 122
WARNING: HSPs involving 888 database sequences were not reported due to the
limiting value of parameter B = 250.
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.316 0.138 0.405 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 314 183 0.00076 110 3 11 22 0.49 32
31 0.40 35
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 1138
No. of states in DFA: 531 (57 KB)
Total size of DFA: 141 KB (2089 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 18.77u 0.12s 18.89t Elapsed: 00:00:01
Total cpu time: 18.80u 0.12s 18.92t Elapsed: 00:00:01
Start: Sat May 11 11:52:48 2013 End: Sat May 11 11:52:49 2013
WARNINGS ISSUED: 2