BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 021295
(314 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8W034|RNP1_ARATH Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis thaliana
GN=RNP1 PE=1 SV=1
Length = 411
Score = 139 bits (349), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 68/155 (43%), Positives = 105/155 (67%), Gaps = 17/155 (10%)
Query: 1 MKDRKTGQPRGFGFVTYADPSVVDKVIEDTHIINGKQVEIKRTIPK------GAVGSKDF 54
M+D+ TG+PRGFGFV ++DPSV+D+V+++ H I+ ++V++KR + + G G+ +
Sbjct: 38 MRDKLTGRPRGFGFVIFSDPSVLDRVLQEKHSIDTREVDVKRAMSREEQQVSGRTGNLNT 97
Query: 55 ----------KTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFIT 104
KTKKIFVGG+P ++ ++EF+ +F +G V + IM D +T+R RGFGF++
Sbjct: 98 SRSSGGDAYNKTKKIFVGGLPPTLTDEEFRQYFEVYGPVTDVAIMYDQATNRPRGFGFVS 157
Query: 105 FDTEQAVDDLLAKGNKLELAGAQVEVKKAEPKKPN 139
FD+E AVD +L K +L+G QVEVK+A PK N
Sbjct: 158 FDSEDAVDSVLHKTFH-DLSGKQVEVKRALPKDAN 191
Score = 63.5 bits (153), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 49/80 (61%), Gaps = 2/80 (2%)
Query: 58 KIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAK 117
K+FVGGI +ED+ ++ F +G+V + +MRD T R RGFGF+ F +D +L +
Sbjct: 7 KLFVGGISWETDEDKLREHFTNYGEVSQAIVMRDKLTGRPRGFGFVIFSDPSVLDRVLQE 66
Query: 118 GNKLELAGAQVEVKKAEPKK 137
+ ++ +V+VK+A ++
Sbjct: 67 KHSIDT--REVDVKRAMSRE 84
>sp|O94432|YHKF_SCHPO Uncharacterized RNA-binding protein C660.15 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=SPBC660.15 PE=4 SV=1
Length = 474
Score = 120 bits (301), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 58/136 (42%), Positives = 89/136 (65%), Gaps = 5/136 (3%)
Query: 1 MKDRKTGQPRGFGFVTYADPSVVDKVIEDTHIINGKQVEIKRTIPKGAVGSKDFKTKKIF 60
M+D TG+ RGFGF+T+ +P V++V+ H ++GK ++ KR IP+ + KT K+F
Sbjct: 195 MRDSTTGRSRGFGFLTFKNPKCVNEVMSKEHHLDGKIIDPKRAIPR----EEQEKTAKMF 250
Query: 61 VGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNK 120
VGG+P E+EF++FF QFG V + +M D T R RGFGF+T++ E AV+ +++
Sbjct: 251 VGGVPGDCTEEEFRNFFNQFGRVLDATLMMDKDTGRPRGFGFVTYENESAVEATMSQP-Y 309
Query: 121 LELAGAQVEVKKAEPK 136
+ + G VEVK+A PK
Sbjct: 310 ITIHGKPVEVKRATPK 325
Score = 71.6 bits (174), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 31/80 (38%), Positives = 55/80 (68%), Gaps = 2/80 (2%)
Query: 58 KIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAK 117
K+F+GG+ +D +D+F QFG+V + +MRD +T RSRGFGF+TF + V+++++K
Sbjct: 164 KMFIGGLNWETTDDSLRDYFEQFGEVLDCTVMRDSTTGRSRGFGFLTFKNPKCVNEVMSK 223
Query: 118 GNKLELAGAQVEVKKAEPKK 137
+ L+ G ++ K+A P++
Sbjct: 224 EHHLD--GKIIDPKRAIPRE 241
>sp|Q9VVE5|MSIR6_DROME RNA-binding protein Musashi homolog Rbp6 OS=Drosophila melanogaster
GN=Rbp6 PE=2 SV=3
Length = 369
Score = 120 bits (301), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 62/142 (43%), Positives = 91/142 (64%), Gaps = 2/142 (1%)
Query: 1 MKDRKTGQPRGFGFVTYADPSVVDKVIED-THIINGKQVEIKRTIPKGAVGSKDFKTKKI 59
MKD T + RGFGFVT++DP+ VDKV+ TH ++GK+V+ K P+ A +TKKI
Sbjct: 61 MKDPTTRRSRGFGFVTFSDPNSVDKVLTQGTHELDGKKVDPKVAFPRRAHPKMVTRTKKI 120
Query: 60 FVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGN 119
FVGG+ + ++ K +F QFG +++ +M D T+R RGFGF+TF +E VD + + +
Sbjct: 121 FVGGLSAPTTLEDVKSYFEQFGPIEDAMLMFDKQTNRHRGFGFVTFQSEDVVDK-VCEIH 179
Query: 120 KLELAGAQVEVKKAEPKKPNLP 141
E+ VE KKA+PK+ LP
Sbjct: 180 FHEINNKMVECKKAQPKEVMLP 201
Score = 69.3 bits (168), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 32/80 (40%), Positives = 53/80 (66%), Gaps = 1/80 (1%)
Query: 58 KIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAK 117
K+F+GG+ + + +D+F ++GD+ E +M+D +T RSRGFGF+TF +VD +L +
Sbjct: 30 KMFIGGLSWQTSPESLRDYFGRYGDISEAMVMKDPTTRRSRGFGFVTFSDPNSVDKVLTQ 89
Query: 118 GNKLELAGAQVEVKKAEPKK 137
G EL G +V+ K A P++
Sbjct: 90 GTH-ELDGKKVDPKVAFPRR 108
>sp|Q920Q6|MSI2H_MOUSE RNA-binding protein Musashi homolog 2 OS=Mus musculus GN=Msi2 PE=1
SV=1
Length = 346
Score = 117 bits (294), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 58/142 (40%), Positives = 90/142 (63%), Gaps = 2/142 (1%)
Query: 1 MKDRKTGQPRGFGFVTYADPSVVDKVI-EDTHIINGKQVEIKRTIPKGAVGSKDFKTKKI 59
M+D T + RGFGFVT+ADP+ VDKV+ + H ++ K ++ K P+ A +TKKI
Sbjct: 53 MRDPTTKRSRGFGFVTFADPASVDKVLGQPHHELDSKTIDPKVAFPRRAQPKMVTRTKKI 112
Query: 60 FVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGN 119
FVGG+ ++ ++ K +F QFG V++ +M D +T+R RGFGF+TF+ E V+ + + +
Sbjct: 113 FVGGLSANTVVEDVKQYFEQFGKVEDAMLMFDKTTNRHRGFGFVTFENEDVVEK-VCEIH 171
Query: 120 KLELAGAQVEVKKAEPKKPNLP 141
E+ VE KKA+PK+ P
Sbjct: 172 FHEINNKMVECKKAQPKEVMFP 193
Score = 71.2 bits (173), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 31/80 (38%), Positives = 52/80 (65%), Gaps = 1/80 (1%)
Query: 58 KIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAK 117
K+F+GG+ + D +D+F +FG+++E +MRD +T RSRGFGF+TF +VD +L +
Sbjct: 22 KMFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRSRGFGFVTFADPASVDKVLGQ 81
Query: 118 GNKLELAGAQVEVKKAEPKK 137
+ EL ++ K A P++
Sbjct: 82 PHH-ELDSKTIDPKVAFPRR 100
>sp|Q99383|HRP1_YEAST Nuclear polyadenylated RNA-binding protein 4 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=HRP1 PE=1
SV=1
Length = 534
Score = 117 bits (293), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 59/136 (43%), Positives = 90/136 (66%), Gaps = 5/136 (3%)
Query: 1 MKDRKTGQPRGFGFVTYADPSVVDKVIEDTHIINGKQVEIKRTIPKGAVGSKDFKTKKIF 60
MKD TG+ RGFGF+++ PS VD+V++ HI++GK ++ KR IP+ KT KIF
Sbjct: 191 MKDPATGRSRGFGFLSFEKPSSVDEVVKTQHILDGKVIDPKRAIPRDEQD----KTGKIF 246
Query: 61 VGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNK 120
VGGI V EF++FF Q+G + + Q+M D T +SRGFGF+T+D+ AV D + +
Sbjct: 247 VGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSADAV-DRVCQNKF 305
Query: 121 LELAGAQVEVKKAEPK 136
++ ++E+K+AEP+
Sbjct: 306 IDFKDRKIEIKRAEPR 321
Score = 58.9 bits (141), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 53/79 (67%), Gaps = 2/79 (2%)
Query: 58 KIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAK 117
K+F+GG+ ED +++F ++G V + +IM+D +T RSRGFGF++F+ +VD+++
Sbjct: 160 KMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLSFEKPSSVDEVVKT 219
Query: 118 GNKLELAGAQVEVKKAEPK 136
+ L+ G ++ K+A P+
Sbjct: 220 QHILD--GKVIDPKRAIPR 236
>sp|Q96DH6|MSI2H_HUMAN RNA-binding protein Musashi homolog 2 OS=Homo sapiens GN=MSI2 PE=1
SV=1
Length = 328
Score = 117 bits (293), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 58/142 (40%), Positives = 90/142 (63%), Gaps = 2/142 (1%)
Query: 1 MKDRKTGQPRGFGFVTYADPSVVDKVI-EDTHIINGKQVEIKRTIPKGAVGSKDFKTKKI 59
M+D T + RGFGFVT+ADP+ VDKV+ + H ++ K ++ K P+ A +TKKI
Sbjct: 53 MRDPTTKRSRGFGFVTFADPASVDKVLGQPHHELDSKTIDPKVAFPRRAQPKMVTRTKKI 112
Query: 60 FVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGN 119
FVGG+ ++ ++ K +F QFG V++ +M D +T+R RGFGF+TF+ E V+ + + +
Sbjct: 113 FVGGLSANTVVEDVKQYFEQFGKVEDAMLMFDKTTNRHRGFGFVTFENEDVVEK-VCEIH 171
Query: 120 KLELAGAQVEVKKAEPKKPNLP 141
E+ VE KKA+PK+ P
Sbjct: 172 FHEINNKMVECKKAQPKEVMFP 193
Score = 70.5 bits (171), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 31/80 (38%), Positives = 52/80 (65%), Gaps = 1/80 (1%)
Query: 58 KIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAK 117
K+F+GG+ + D +D+F +FG+++E +MRD +T RSRGFGF+TF +VD +L +
Sbjct: 22 KMFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRSRGFGFVTFADPASVDKVLGQ 81
Query: 118 GNKLELAGAQVEVKKAEPKK 137
+ EL ++ K A P++
Sbjct: 82 PHH-ELDSKTIDPKVAFPRR 100
>sp|P48809|RB27C_DROME Heterogeneous nuclear ribonucleoprotein 27C OS=Drosophila
melanogaster GN=Hrb27C PE=1 SV=2
Length = 421
Score = 116 bits (291), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 55/137 (40%), Positives = 90/137 (65%), Gaps = 2/137 (1%)
Query: 1 MKDRKTGQPRGFGFVTYADPSVVDKVIED-THIINGKQVEIKRTIPKGAVGSKDFKTKKI 59
MK+ ++G+ RGFGFVT+ADP+ V+ V+++ H ++G+ ++ K P+ K K+
Sbjct: 39 MKNNESGRSRGFGFVTFADPTNVNHVLQNGPHTLDGRTIDPKPCNPRTLQKPKKGGGYKV 98
Query: 60 FVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGN 119
F+GG+PS+V E + + FF ++G V E IM D +SRGFGF++F+ E +V+ + +
Sbjct: 99 FLGGLPSNVTETDLRTFFNRYGKVTEVVIMYDQEKKKSRGFGFLSFEEESSVEHVTNE-R 157
Query: 120 KLELAGAQVEVKKAEPK 136
+ L G QVE+KKAEP+
Sbjct: 158 YINLNGKQVEIKKAEPR 174
Score = 60.8 bits (146), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 47/85 (55%), Gaps = 1/85 (1%)
Query: 58 KIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAK 117
K+FVGG+ ++ +F +FGD+ + +M+++ + RSRGFGF+TF V+ +L
Sbjct: 8 KLFVGGLSWETTQENLSRYFCRFGDIIDCVVMKNNESGRSRGFGFVTFADPTNVNHVLQN 67
Query: 118 GNKLELAGAQVEVKKAEPKKPNLPQ 142
G L G ++ K P+ P+
Sbjct: 68 GPHT-LDGRTIDPKPCNPRTLQKPK 91
>sp|Q96EP5|DAZP1_HUMAN DAZ-associated protein 1 OS=Homo sapiens GN=DAZAP1 PE=1 SV=1
Length = 407
Score = 108 bits (270), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 59/151 (39%), Positives = 87/151 (57%), Gaps = 16/151 (10%)
Query: 1 MKDRKTGQPRGFGFVTYADPSVVDKVIED-THIINGKQVEIKRTIPKGAVG--------- 50
MKD+ T Q RGFGFV + DP+ V V+ H ++G+ ++ K P+G
Sbjct: 42 MKDKTTNQSRGFGFVKFKDPNCVGTVLASRPHTLDGRNIDPKPCTPRGMQPERTRPKEGW 101
Query: 51 -----SKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITF 105
S + K+ KIFVGGIP + E E +++F +FG V E ++ D R RGFGFITF
Sbjct: 102 QKGPRSDNSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITF 161
Query: 106 DTEQAVDDLLAKGNKLELAGAQVEVKKAEPK 136
+ EQ+VD + + ++ G +VEVK+AEP+
Sbjct: 162 EDEQSVDQAV-NMHFHDIMGKKVEVKRAEPR 191
Score = 59.3 bits (142), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 46/79 (58%), Gaps = 1/79 (1%)
Query: 58 KIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAK 117
K+FVGG+ S ++ + +F Q+G+V + IM+D +T++SRGFGF+ F V +LA
Sbjct: 11 KLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLA- 69
Query: 118 GNKLELAGAQVEVKKAEPK 136
L G ++ K P+
Sbjct: 70 SRPHTLDGRNIDPKPCTPR 88
>sp|Q9JII5|DAZP1_MOUSE DAZ-associated protein 1 OS=Mus musculus GN=Dazap1 PE=2 SV=2
Length = 406
Score = 107 bits (268), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 59/151 (39%), Positives = 86/151 (56%), Gaps = 16/151 (10%)
Query: 1 MKDRKTGQPRGFGFVTYADPSVVDKVIED-THIINGKQVEIKRTIPKGAVG--------- 50
MKD+ T Q RGFGFV + DP+ V V+ H ++G+ ++ K P+G
Sbjct: 42 MKDKTTNQSRGFGFVKFKDPNCVGTVLASRPHTLDGRNIDPKPCTPRGMQPERTRPKEGW 101
Query: 51 -----SKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITF 105
S K+ KIFVGGIP + E E +++F +FG V E ++ D R RGFGFITF
Sbjct: 102 QKGPRSDSSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITF 161
Query: 106 DTEQAVDDLLAKGNKLELAGAQVEVKKAEPK 136
+ EQ+VD + + ++ G +VEVK+AEP+
Sbjct: 162 EDEQSVDQAV-NMHFHDIMGKKVEVKRAEPR 191
Score = 59.3 bits (142), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 46/79 (58%), Gaps = 1/79 (1%)
Query: 58 KIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAK 117
K+FVGG+ S ++ + +F Q+G+V + IM+D +T++SRGFGF+ F V +LA
Sbjct: 11 KLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLA- 69
Query: 118 GNKLELAGAQVEVKKAEPK 136
L G ++ K P+
Sbjct: 70 SRPHTLDGRNIDPKPCTPR 88
>sp|O43347|MSI1H_HUMAN RNA-binding protein Musashi homolog 1 OS=Homo sapiens GN=MSI1 PE=1
SV=1
Length = 362
Score = 107 bits (266), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 67/189 (35%), Positives = 100/189 (52%), Gaps = 2/189 (1%)
Query: 1 MKDRKTGQPRGFGFVTYADPSVVDKVI-EDTHIINGKQVEIKRTIPKGAVGSKDFKTKKI 59
M+D T + RGFGFVT+ D + VDKV+ + H ++ K ++ K P+ A +TKKI
Sbjct: 52 MRDPLTKRSRGFGFVTFMDQAGVDKVLAQSRHELDSKTIDPKVAFPRRAQPKMVTRTKKI 111
Query: 60 FVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGN 119
FVGG+ + ++ K +F QFG V + +M D +T+R RGFGF+TF++E V+ + + +
Sbjct: 112 FVGGLSVNTTVEDVKQYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEK-VCEIH 170
Query: 120 KLELAGAQVEVKKAEPKKPNLPQPSYRRYNNPKPAYGSGFGDAYGGYGGGGFAGGGFGGS 179
E+ VE KKA+PK+ P S R + P F G G GF +
Sbjct: 171 FHEINNKMVECKKAQPKEVMSPTGSARGRSRVMPYGMDAFMLGIGMLGYPGFQATTYASR 230
Query: 180 GGGGGGGGY 188
G GY
Sbjct: 231 SYTGLAPGY 239
Score = 66.6 bits (161), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 32/80 (40%), Positives = 53/80 (66%), Gaps = 1/80 (1%)
Query: 58 KIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAK 117
K+F+GG+ ++ +++F QFG+V+E +MRD T RSRGFGF+TF + VD +LA+
Sbjct: 21 KMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQ 80
Query: 118 GNKLELAGAQVEVKKAEPKK 137
++ EL ++ K A P++
Sbjct: 81 -SRHELDSKTIDPKVAFPRR 99
>sp|Q61474|MSI1H_MOUSE RNA-binding protein Musashi homolog 1 OS=Mus musculus GN=Msi1 PE=1
SV=1
Length = 362
Score = 107 bits (266), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 67/189 (35%), Positives = 100/189 (52%), Gaps = 2/189 (1%)
Query: 1 MKDRKTGQPRGFGFVTYADPSVVDKVI-EDTHIINGKQVEIKRTIPKGAVGSKDFKTKKI 59
M+D T + RGFGFVT+ D + VDKV+ + H ++ K ++ K P+ A +TKKI
Sbjct: 52 MRDPLTKRSRGFGFVTFMDQAGVDKVLAQSRHELDSKTIDPKVAFPRRAQPKMVTRTKKI 111
Query: 60 FVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGN 119
FVGG+ + ++ K +F QFG V + +M D +T+R RGFGF+TF++E V+ + + +
Sbjct: 112 FVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEK-VCEIH 170
Query: 120 KLELAGAQVEVKKAEPKKPNLPQPSYRRYNNPKPAYGSGFGDAYGGYGGGGFAGGGFGGS 179
E+ VE KKA+PK+ P S R + P F G G GF +
Sbjct: 171 FHEINNKMVECKKAQPKEVMSPTGSARGRSRVMPYGMDAFMLGIGMLGYPGFQATTYASR 230
Query: 180 GGGGGGGGY 188
G GY
Sbjct: 231 SYTGLAPGY 239
Score = 66.6 bits (161), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 32/80 (40%), Positives = 53/80 (66%), Gaps = 1/80 (1%)
Query: 58 KIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAK 117
K+F+GG+ ++ +++F QFG+V+E +MRD T RSRGFGF+TF + VD +LA+
Sbjct: 21 KMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQ 80
Query: 118 GNKLELAGAQVEVKKAEPKK 137
++ EL ++ K A P++
Sbjct: 81 -SRHELDSKTIDPKVAFPRR 99
>sp|Q8K3P4|MSI1H_RAT RNA-binding protein Musashi homolog 1 OS=Rattus norvegicus GN=Msi1
PE=2 SV=1
Length = 362
Score = 107 bits (266), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 67/189 (35%), Positives = 100/189 (52%), Gaps = 2/189 (1%)
Query: 1 MKDRKTGQPRGFGFVTYADPSVVDKVI-EDTHIINGKQVEIKRTIPKGAVGSKDFKTKKI 59
M+D T + RGFGFVT+ D + VDKV+ + H ++ K ++ K P+ A +TKKI
Sbjct: 52 MRDPLTKRSRGFGFVTFMDQAGVDKVLAQSRHELDSKTIDPKVAFPRRAQPKMVTRTKKI 111
Query: 60 FVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGN 119
FVGG+ + ++ K +F QFG V + +M D +T+R RGFGF+TF++E V+ + + +
Sbjct: 112 FVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEK-VCEIH 170
Query: 120 KLELAGAQVEVKKAEPKKPNLPQPSYRRYNNPKPAYGSGFGDAYGGYGGGGFAGGGFGGS 179
E+ VE KKA+PK+ P S R + P F G G GF +
Sbjct: 171 FHEINNKMVECKKAQPKEVMSPTGSARGRSRVMPYGMDAFMLGIGMLGYPGFQATTYASR 230
Query: 180 GGGGGGGGY 188
G GY
Sbjct: 231 SYTGLAPGY 239
Score = 66.6 bits (161), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 32/80 (40%), Positives = 53/80 (66%), Gaps = 1/80 (1%)
Query: 58 KIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAK 117
K+F+GG+ ++ +++F QFG+V+E +MRD T RSRGFGF+TF + VD +LA+
Sbjct: 21 KMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQ 80
Query: 118 GNKLELAGAQVEVKKAEPKK 137
++ EL ++ K A P++
Sbjct: 81 -SRHELDSKTIDPKVAFPRR 99
>sp|Q98SJ2|DAZP1_XENLA DAZ-associated protein 1 OS=Xenopus laevis GN=dazap1 PE=1 SV=1
Length = 360
Score = 104 bits (259), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 58/152 (38%), Positives = 88/152 (57%), Gaps = 17/152 (11%)
Query: 1 MKDRKTGQPRGFGFVTYADPSVVDKVIED-THIINGKQVEIKRTIPKGAVG--------- 50
MKD+ T Q RGFGFV + DP+ V V+ H ++G+ ++ K P+G
Sbjct: 42 MKDKTTNQSRGFGFVKFKDPNCVGTVLASRPHTLDGRNIDPKPCTPRGMQPERSRPREGW 101
Query: 51 ------SKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFIT 104
+++ ++ KIFVGGIP + E E K++F +FG V E ++ D R RGFGFIT
Sbjct: 102 QQKEPRTENSRSNKIFVGGIPHNCGETELKEYFNRFGVVTEVVMIYDAEKQRPRGFGFIT 161
Query: 105 FDTEQAVDDLLAKGNKLELAGAQVEVKKAEPK 136
F+ EQ+VD + + ++ G +VEVK+AEP+
Sbjct: 162 FEDEQSVDQAV-NMHFHDIMGKKVEVKRAEPR 192
Score = 57.0 bits (136), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 46/79 (58%), Gaps = 1/79 (1%)
Query: 58 KIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAK 117
K+FVGG+ S ++ + +F Q+G+V + IM+D +T++SRGFGF+ F V +LA
Sbjct: 11 KLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLA- 69
Query: 118 GNKLELAGAQVEVKKAEPK 136
L G ++ K P+
Sbjct: 70 SRPHTLDGRNIDPKPCTPR 88
>sp|Q08473|SQD_DROME RNA-binding protein squid OS=Drosophila melanogaster GN=sqd PE=1
SV=3
Length = 344
Score = 103 bits (257), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 59/138 (42%), Positives = 87/138 (63%), Gaps = 11/138 (7%)
Query: 3 DRKTGQPRGFGFVTYADPSVVDKV-IEDTHIINGKQVEIKRTIPKGAVGSKDFKTKKIFV 61
D +TG+ RGF F+ + + +DKV D HIIN K+V+ PK A + KIFV
Sbjct: 90 DPQTGRSRGFAFIVFTNTEAIDKVSAADEHIINSKKVD-----PKKAKA----RHGKIFV 140
Query: 62 GGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKL 121
GG+ + ++++E K +F QFG++ E ++ D S+ +GF FITFD+EQ V DLL K K
Sbjct: 141 GGLTTEISDEEIKTYFGQFGNIVEVEMPFDKQKSQRKGFCFITFDSEQVVTDLL-KTPKQ 199
Query: 122 ELAGAQVEVKKAEPKKPN 139
++AG +V+VK+A PK N
Sbjct: 200 KIAGKEVDVKRATPKPEN 217
Score = 54.7 bits (130), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 44/81 (54%), Gaps = 6/81 (7%)
Query: 57 KKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLA 116
+K+FVGG+ E E +D F ++G+++ + D T RSRGF FI F +A+D + A
Sbjct: 56 RKLFVGGLSWETTEKELRDHFGKYGEIESINVKTDPQTGRSRGFAFIVFTNTEAIDKVSA 115
Query: 117 KGNKLELAGAQVEVKKAEPKK 137
+ + KK +PKK
Sbjct: 116 ADEHI------INSKKVDPKK 130
>sp|Q02926|RB97D_DROME Ribonucleoprotein RB97D OS=Drosophila melanogaster GN=Rb97D PE=2
SV=1
Length = 471
Score = 102 bits (254), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 52/136 (38%), Positives = 83/136 (61%), Gaps = 4/136 (2%)
Query: 1 MKDRKTGQPRGFGFVTYADPSVVDKVIED-THIINGKQVEIKRTIPKGAVGSKD--FKTK 57
M+D T + RGFGF+TY +VD+ E+ HII+GK VE KR +P+ S++ K
Sbjct: 64 MRDAATKRSRGFGFITYTKSLMVDRAQENRPHIIDGKTVEAKRALPRPERESRETNISVK 123
Query: 58 KIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAK 117
K+FVGG+ + +E+ +++F+QFG+V +++ D +T + RGF F+ FD AVD + K
Sbjct: 124 KLFVGGLKDNHDEECLREYFLQFGNVVSVKLLTDKTTGKRRGFAFVEFDDYDAVDKAILK 183
Query: 118 GNKLELAGAQVEVKKA 133
+ V+VKK+
Sbjct: 184 KQH-AIKYVHVDVKKS 198
Score = 61.6 bits (148), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 33/81 (40%), Positives = 49/81 (60%), Gaps = 3/81 (3%)
Query: 57 KKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLA 116
+K+F+GG+ E+ K F+ Q+G V + +MRD +T RSRGFGFIT+ VD A
Sbjct: 32 RKLFIGGLAPYTTEENLKLFYGQWGKVVDVVVMRDAATKRSRGFGFITYTKSLMVDR--A 89
Query: 117 KGNKLELA-GAQVEVKKAEPK 136
+ N+ + G VE K+A P+
Sbjct: 90 QENRPHIIDGKTVEAKRALPR 110
>sp|Q32P51|RA1L2_HUMAN Heterogeneous nuclear ribonucleoprotein A1-like 2 OS=Homo sapiens
GN=HNRNPA1L2 PE=2 SV=2
Length = 320
Score = 97.1 bits (240), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 56/145 (38%), Positives = 79/145 (54%), Gaps = 14/145 (9%)
Query: 1 MKDRKTGQPRGFGFVTYADPSVVDKVIEDT-HIINGKQVEIKRTIPKGAVGSKD------ 53
M+D T + RGFGFVTYA VD + T H ++G+ VE PK AV +D
Sbjct: 46 MRDPNTKRSRGFGFVTYATVEEVDAAMNTTPHKVDGRVVE-----PKRAVSREDSQRPGA 100
Query: 54 -FKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVD 112
KKIFVGGI E +D+F Q+G ++ +IM D + + RGF F+TFD +VD
Sbjct: 101 HLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVD 160
Query: 113 DLLAKGNKLELAGAQVEVKKAEPKK 137
++ + + G EV+KA PK+
Sbjct: 161 KIVIQKYHT-VKGHNCEVRKALPKQ 184
Score = 55.8 bits (133), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 51/90 (56%), Gaps = 1/90 (1%)
Query: 44 IPKGAVGSKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFI 103
+ K A + + +K+F+GG+ ++ + F Q+G + + +MRD +T RSRGFGF+
Sbjct: 1 MSKSASPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFV 60
Query: 104 TFDTEQAVDDLLAKGNKLELAGAQVEVKKA 133
T+ T + VD + ++ G VE K+A
Sbjct: 61 TYATVEEVDAAM-NTTPHKVDGRVVEPKRA 89
>sp|Q28521|ROA1_MACMU Heterogeneous nuclear ribonucleoprotein A1 OS=Macaca mulatta
GN=HNRNPA1 PE=2 SV=3
Length = 320
Score = 90.9 bits (224), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 54/145 (37%), Positives = 77/145 (53%), Gaps = 14/145 (9%)
Query: 1 MKDRKTGQPRGFGFVTYADPSVVDKVIE-DTHIINGKQVEIKRTIPKGAVGSKD------ 53
M+D T + RGFGFVTYA VD + H ++G+ VE PK AV +D
Sbjct: 46 MRDPNTKRSRGFGFVTYATVEKVDAAMNARPHKVDGRVVE-----PKRAVSREDSQRPGA 100
Query: 54 -FKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVD 112
KKIFVGGI E +D+F Q+G ++ +IM D + + RGF F+TFD +VD
Sbjct: 101 HLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHNSVD 160
Query: 113 DLLAKGNKLELAGAQVEVKKAEPKK 137
++ + + G EV+KA K+
Sbjct: 161 KIVIQKYHT-VNGHNCEVRKALSKQ 184
Score = 57.0 bits (136), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 51/80 (63%), Gaps = 3/80 (3%)
Query: 55 KTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDL 114
+ +K+F+GG+ ++ + F Q+G + + +MRD +T RSRGFGF+T+ T + VD
Sbjct: 12 QLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEKVDAA 71
Query: 115 L-AKGNKLELAGAQVEVKKA 133
+ A+ +K++ G VE K+A
Sbjct: 72 MNARPHKVD--GRVVEPKRA 89
>sp|P04256|ROA1_RAT Heterogeneous nuclear ribonucleoprotein A1 OS=Rattus norvegicus
GN=Hnrnpa1 PE=1 SV=3
Length = 320
Score = 90.5 bits (223), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 54/145 (37%), Positives = 77/145 (53%), Gaps = 14/145 (9%)
Query: 1 MKDRKTGQPRGFGFVTYADPSVVDKVIE-DTHIINGKQVEIKRTIPKGAVGSKD------ 53
M+D T + RGFGFVTYA VD + H ++G+ VE PK AV +D
Sbjct: 46 MRDPNTKRSRGFGFVTYATVEEVDAAMNARPHKVDGRVVE-----PKRAVSREDSQRPGA 100
Query: 54 -FKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVD 112
KKIFVGGI E +D+F Q+G ++ +IM D + + RGF F+TFD +VD
Sbjct: 101 HLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVD 160
Query: 113 DLLAKGNKLELAGAQVEVKKAEPKK 137
++ + + G EV+KA K+
Sbjct: 161 KIVIQKYHT-VNGHNCEVRKALCKQ 184
Score = 57.0 bits (136), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 51/80 (63%), Gaps = 3/80 (3%)
Query: 55 KTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDL 114
+ +K+F+GG+ ++ + F Q+G + + +MRD +T RSRGFGF+T+ T + VD
Sbjct: 12 QLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAA 71
Query: 115 L-AKGNKLELAGAQVEVKKA 133
+ A+ +K++ G VE K+A
Sbjct: 72 MNARPHKVD--GRVVEPKRA 89
>sp|A5A6H4|ROA1_PANTR Heterogeneous nuclear ribonucleoprotein A1 OS=Pan troglodytes
GN=HNRNPA1 PE=2 SV=1
Length = 320
Score = 90.5 bits (223), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 54/145 (37%), Positives = 77/145 (53%), Gaps = 14/145 (9%)
Query: 1 MKDRKTGQPRGFGFVTYADPSVVDKVIE-DTHIINGKQVEIKRTIPKGAVGSKD------ 53
M+D T + RGFGFVTYA VD + H ++G+ VE PK AV +D
Sbjct: 46 MRDPNTKRSRGFGFVTYATVEEVDAAMNARPHKVDGRVVE-----PKRAVSREDSQRPGA 100
Query: 54 -FKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVD 112
KKIFVGGI E +D+F Q+G ++ +IM D + + RGF F+TFD +VD
Sbjct: 101 HLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVD 160
Query: 113 DLLAKGNKLELAGAQVEVKKAEPKK 137
++ + + G EV+KA K+
Sbjct: 161 KIVIQKYHT-VNGHNCEVRKALSKQ 184
Score = 57.0 bits (136), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 51/80 (63%), Gaps = 3/80 (3%)
Query: 55 KTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDL 114
+ +K+F+GG+ ++ + F Q+G + + +MRD +T RSRGFGF+T+ T + VD
Sbjct: 12 QLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAA 71
Query: 115 L-AKGNKLELAGAQVEVKKA 133
+ A+ +K++ G VE K+A
Sbjct: 72 MNARPHKVD--GRVVEPKRA 89
>sp|P49312|ROA1_MOUSE Heterogeneous nuclear ribonucleoprotein A1 OS=Mus musculus
GN=Hnrnpa1 PE=1 SV=2
Length = 320
Score = 90.5 bits (223), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 54/145 (37%), Positives = 77/145 (53%), Gaps = 14/145 (9%)
Query: 1 MKDRKTGQPRGFGFVTYADPSVVDKVIE-DTHIINGKQVEIKRTIPKGAVGSKD------ 53
M+D T + RGFGFVTYA VD + H ++G+ VE PK AV +D
Sbjct: 46 MRDPNTKRSRGFGFVTYATVEEVDAAMNARPHKVDGRVVE-----PKRAVSREDSQRPGA 100
Query: 54 -FKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVD 112
KKIFVGGI E +D+F Q+G ++ +IM D + + RGF F+TFD +VD
Sbjct: 101 HLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVD 160
Query: 113 DLLAKGNKLELAGAQVEVKKAEPKK 137
++ + + G EV+KA K+
Sbjct: 161 KIVIQKYHT-VNGHNCEVRKALSKQ 184
Score = 57.0 bits (136), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 51/80 (63%), Gaps = 3/80 (3%)
Query: 55 KTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDL 114
+ +K+F+GG+ ++ + F Q+G + + +MRD +T RSRGFGF+T+ T + VD
Sbjct: 12 QLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAA 71
Query: 115 L-AKGNKLELAGAQVEVKKA 133
+ A+ +K++ G VE K+A
Sbjct: 72 MNARPHKVD--GRVVEPKRA 89
>sp|P09867|ROA1_BOVIN Heterogeneous nuclear ribonucleoprotein A1 OS=Bos taurus GN=HNRNPA1
PE=1 SV=2
Length = 320
Score = 90.5 bits (223), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 54/145 (37%), Positives = 77/145 (53%), Gaps = 14/145 (9%)
Query: 1 MKDRKTGQPRGFGFVTYADPSVVDKVIE-DTHIINGKQVEIKRTIPKGAVGSKD------ 53
M+D T + RGFGFVTYA VD + H ++G+ VE PK AV +D
Sbjct: 46 MRDPNTKRSRGFGFVTYATVEEVDAAMNARPHKVDGRVVE-----PKRAVSREDSQRPGA 100
Query: 54 -FKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVD 112
KKIFVGGI E +D+F Q+G ++ +IM D + + RGF F+TFD +VD
Sbjct: 101 HLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVD 160
Query: 113 DLLAKGNKLELAGAQVEVKKAEPKK 137
++ + + G EV+KA K+
Sbjct: 161 KIVIQKYHT-VNGHNCEVRKALSKQ 184
Score = 57.0 bits (136), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 51/80 (63%), Gaps = 3/80 (3%)
Query: 55 KTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDL 114
+ +K+F+GG+ ++ + F Q+G + + +MRD +T RSRGFGF+T+ T + VD
Sbjct: 12 QLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAA 71
Query: 115 L-AKGNKLELAGAQVEVKKA 133
+ A+ +K++ G VE K+A
Sbjct: 72 MNARPHKVD--GRVVEPKRA 89
>sp|P07909|ROA1_DROME Heterogeneous nuclear ribonucleoprotein A1 OS=Drosophila
melanogaster GN=Hrb98DE PE=2 SV=1
Length = 365
Score = 90.5 bits (223), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 52/140 (37%), Positives = 83/140 (59%), Gaps = 4/140 (2%)
Query: 1 MKDRKTGQPRGFGFVTYADPSVVDKVIEDT-HIINGKQVEIKRTIPKGAVGSKDF--KTK 57
MKD +T + RGFGF+TY+ S++D+ + H I+G+ VE KR +P+ + S + K
Sbjct: 63 MKDPRTKRSRGFGFITYSHSSMIDEAQKSRPHKIDGRVVEPKRAVPRQDIDSPNAGATVK 122
Query: 58 KIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAK 117
K+FVG + +E +D+F FG++ + I+ D T + RGF F+ FD VD ++ +
Sbjct: 123 KLFVGALKDDHDEQSIRDYFQHFGNIVDINIVIDKETGKKRGFAFVEFDDYDPVDKVVLQ 182
Query: 118 GNKLELAGAQVEVKKAEPKK 137
+L G V+VKKA PK+
Sbjct: 183 KQH-QLNGKMVDVKKALPKQ 201
Score = 49.3 bits (116), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 48/82 (58%), Gaps = 1/82 (1%)
Query: 56 TKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLL 115
+K+F+GG+ ++ K F ++G++ + +M+D T RSRGFGFIT+ +D+
Sbjct: 30 MRKLFIGGLDYRTTDENLKAHFEKWGNIVDVVVMKDPRTKRSRGFGFITYSHSSMIDE-A 88
Query: 116 AKGNKLELAGAQVEVKKAEPKK 137
K ++ G VE K+A P++
Sbjct: 89 QKSRPHKIDGRVVEPKRAVPRQ 110
>sp|P09651|ROA1_HUMAN Heterogeneous nuclear ribonucleoprotein A1 OS=Homo sapiens
GN=HNRNPA1 PE=1 SV=5
Length = 372
Score = 89.0 bits (219), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 54/145 (37%), Positives = 77/145 (53%), Gaps = 14/145 (9%)
Query: 1 MKDRKTGQPRGFGFVTYADPSVVDKVIE-DTHIINGKQVEIKRTIPKGAVGSKD------ 53
M+D T + RGFGFVTYA VD + H ++G+ VE PK AV +D
Sbjct: 46 MRDPNTKRSRGFGFVTYATVEEVDAAMNARPHKVDGRVVE-----PKRAVSREDSQRPGA 100
Query: 54 -FKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVD 112
KKIFVGGI E +D+F Q+G ++ +IM D + + RGF F+TFD +VD
Sbjct: 101 HLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVD 160
Query: 113 DLLAKGNKLELAGAQVEVKKAEPKK 137
++ + + G EV+KA K+
Sbjct: 161 KIVIQKYHT-VNGHNCEVRKALSKQ 184
Score = 55.8 bits (133), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 51/80 (63%), Gaps = 3/80 (3%)
Query: 55 KTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDL 114
+ +K+F+GG+ ++ + F Q+G + + +MRD +T RSRGFGF+T+ T + VD
Sbjct: 12 QLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAA 71
Query: 115 L-AKGNKLELAGAQVEVKKA 133
+ A+ +K++ G VE K+A
Sbjct: 72 MNARPHKVD--GRVVEPKRA 89
>sp|Q99729|ROAA_HUMAN Heterogeneous nuclear ribonucleoprotein A/B OS=Homo sapiens
GN=HNRNPAB PE=1 SV=2
Length = 332
Score = 88.6 bits (218), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 49/137 (35%), Positives = 85/137 (62%), Gaps = 8/137 (5%)
Query: 3 DRKTGQPRGFGFVTYADPSVVDKVI-EDTHIINGKQVEIKRTIPKGAVGSKDFKTKKIFV 61
D TG+ RGFGF+ + D + V+KV+ + H ++G+ ++ PK A+ K KKIFV
Sbjct: 103 DPNTGRSRGFGFILFKDAASVEKVLDQKEHRLDGRVID-----PKKAMAMKKDPVKKIFV 157
Query: 62 GGI-PSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNK 120
GG+ P S E++ +++F +FG+++ ++ D ++ RGF FITF E+ V +L K
Sbjct: 158 GGLNPESPTEEKIREYFGEFGEIEAIELPMDPKLNKRRGFVFITFKEEEPVKKVLEKKFH 217
Query: 121 LELAGAQVEVKKAEPKK 137
++G++ E+K A+PK+
Sbjct: 218 T-VSGSKCEIKVAQPKE 233
Score = 54.3 bits (129), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 47/76 (61%), Gaps = 1/76 (1%)
Query: 58 KIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAK 117
K+FVGG+ ++ + KD+F +FG+V + I D +T RSRGFGFI F +V+ +L +
Sbjct: 70 KMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLDQ 129
Query: 118 GNKLELAGAQVEVKKA 133
+ L G ++ KKA
Sbjct: 130 -KEHRLDGRVIDPKKA 144
>sp|Q3SWU3|HNRDL_RAT Heterogeneous nuclear ribonucleoprotein D-like OS=Rattus norvegicus
GN=Hnrpdl PE=2 SV=1
Length = 322
Score = 87.4 bits (215), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 50/136 (36%), Positives = 82/136 (60%), Gaps = 6/136 (4%)
Query: 3 DRKTGQPRGFGFVTYADPSVVDKVIE-DTHIINGKQVEIKRTIPKGAVGSKDFKTKKIFV 61
D TG+ RGFGFV + D + VDKV+E H ++GK ++ KR A+ K+ KK+FV
Sbjct: 85 DPVTGRSRGFGFVLFKDAASVDKVLELKEHKLDGKLIDPKRA---KALKGKE-PPKKVFV 140
Query: 62 GGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKL 121
GG+ +E++ K++F FG+++ ++ D T+ RGF FIT+ E+ V LL +
Sbjct: 141 GGLSPDTSEEQIKEYFGAFGEIENIELPMDTKTNERRGFCFITYTDEEPVKKLL-ESRYH 199
Query: 122 ELAGAQVEVKKAEPKK 137
++ + E+K A+PK+
Sbjct: 200 QIGSGKCEIKVAQPKE 215
Score = 50.1 bits (118), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 48/81 (59%), Gaps = 3/81 (3%)
Query: 58 KIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLL-A 116
K+F+GG+ ++ + ++ +FG+V + I D T RSRGFGF+ F +VD +L
Sbjct: 52 KMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAASVDKVLEL 111
Query: 117 KGNKLELAGAQVEVKKAEPKK 137
K +KL+ G ++ K+A+ K
Sbjct: 112 KEHKLD--GKLIDPKRAKALK 130
>sp|O14979|HNRDL_HUMAN Heterogeneous nuclear ribonucleoprotein D-like OS=Homo sapiens
GN=HNRPDL PE=1 SV=3
Length = 420
Score = 86.3 bits (212), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 50/136 (36%), Positives = 82/136 (60%), Gaps = 6/136 (4%)
Query: 3 DRKTGQPRGFGFVTYADPSVVDKVIE-DTHIINGKQVEIKRTIPKGAVGSKDFKTKKIFV 61
D TG+ RGFGFV + D + VDKV+E H ++GK ++ KR A+ K+ KK+FV
Sbjct: 182 DPVTGRSRGFGFVLFKDAASVDKVLELKEHKLDGKLIDPKRA---KALKGKE-PPKKVFV 237
Query: 62 GGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKL 121
GG+ +E++ K++F FG+++ ++ D T+ RGF FIT+ E+ V LL +
Sbjct: 238 GGLSPDTSEEQIKEYFGAFGEIENIELPMDTKTNERRGFCFITYTDEEPVKKLL-ESRYH 296
Query: 122 ELAGAQVEVKKAEPKK 137
++ + E+K A+PK+
Sbjct: 297 QIGSGKCEIKVAQPKE 312
Score = 49.3 bits (116), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 47/78 (60%), Gaps = 3/78 (3%)
Query: 58 KIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLL-A 116
K+F+GG+ ++ + ++ +FG+V + I D T RSRGFGF+ F +VD +L
Sbjct: 149 KMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAASVDKVLEL 208
Query: 117 KGNKLELAGAQVEVKKAE 134
K +KL+ G ++ K+A+
Sbjct: 209 KEHKLD--GKLIDPKRAK 224
>sp|Q99020|ROAA_MOUSE Heterogeneous nuclear ribonucleoprotein A/B OS=Mus musculus
GN=Hnrnpab PE=1 SV=1
Length = 285
Score = 86.3 bits (212), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 49/136 (36%), Positives = 82/136 (60%), Gaps = 7/136 (5%)
Query: 3 DRKTGQPRGFGFVTYADPSVVDKVI-EDTHIINGKQVEIKRTIPKGAVGSKDFKTKKIFV 61
D TG+ RGFGF+ + D S V+KV+ + H ++G+ ++ PK A+ K KKIFV
Sbjct: 109 DPNTGRSRGFGFILFKDSSSVEKVLDQKEHRLDGRVID-----PKKAMAMKKDPVKKIFV 163
Query: 62 GGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKL 121
GG+ E++ +++F QFG+++ ++ D ++ RGF FITF E V +L K
Sbjct: 164 GGLNPEATEEKIREYFGQFGEIEAIELPIDPKLNKRRGFVFITFKEEDPVKKVLEKKFHT 223
Query: 122 ELAGAQVEVKKAEPKK 137
++G++ E+K A+PK+
Sbjct: 224 -VSGSKCEIKVAQPKE 238
Score = 53.1 bits (126), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 46/76 (60%), Gaps = 1/76 (1%)
Query: 58 KIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAK 117
K+FVGG+ ++ + KD+F +FG+V + I D +T RSRGFGFI F +V+ +L +
Sbjct: 76 KMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDSSSVEKVLDQ 135
Query: 118 GNKLELAGAQVEVKKA 133
L G ++ KKA
Sbjct: 136 KEH-RLDGRVIDPKKA 150
>sp|Q22037|ROA1_CAEEL Heterogeneous nuclear ribonucleoprotein A1 OS=Caenorhabditis
elegans GN=hrp-1 PE=1 SV=1
Length = 346
Score = 85.9 bits (211), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 46/135 (34%), Positives = 81/135 (60%), Gaps = 4/135 (2%)
Query: 1 MKDRKTGQPRGFGFVTYADPSVVDKVIEDT-HIINGKQVEIKRTIPKGAVG--SKDFKTK 57
M+D T + RGFGFVT++ + VD ++ HII+GK V+ KR +P+ + TK
Sbjct: 55 MRDPTTKRSRGFGFVTFSGKTEVDAAMKQRPHIIDGKTVDPKRAVPRDDKNRSESNVSTK 114
Query: 58 KIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAK 117
+++V G+ ED ++F ++G V + +I+ D +T + RGFGF+TFD +VD + +
Sbjct: 115 RLYVSGVREDHTEDMLTEYFTKYGTVTKSEIILDKATQKPRGFGFVTFDDHDSVDQCVLQ 174
Query: 118 GNKLELAGAQVEVKK 132
+ + + G + +V+K
Sbjct: 175 KSHM-VNGHRCDVRK 188
Score = 64.7 bits (156), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 32/80 (40%), Positives = 53/80 (66%), Gaps = 1/80 (1%)
Query: 57 KKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLA 116
+KIFVGG+ S+ +D ++F+ QFG++ + +MRD +T RSRGFGF+TF + VD +
Sbjct: 23 RKIFVGGLTSNTTDDLMREFYSQFGEITDIIVMRDPTTKRSRGFGFVTFSGKTEVDAAMK 82
Query: 117 KGNKLELAGAQVEVKKAEPK 136
+ + + G V+ K+A P+
Sbjct: 83 QRPHI-IDGKTVDPKRAVPR 101
>sp|Q5ZI72|HNRDL_CHICK Heterogeneous nuclear ribonucleoprotein D-like OS=Gallus gallus
GN=HNRPDL PE=2 SV=1
Length = 301
Score = 85.9 bits (211), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 49/136 (36%), Positives = 82/136 (60%), Gaps = 6/136 (4%)
Query: 3 DRKTGQPRGFGFVTYADPSVVDKVIE-DTHIINGKQVEIKRTIPKGAVGSKDFKTKKIFV 61
D TG+ RGFGFV + D + V+KV+E H ++GK ++ KR A+ K+ KK+FV
Sbjct: 64 DPVTGRSRGFGFVLFKDAASVEKVLELKEHKLDGKLIDPKRA---KALKGKE-PPKKVFV 119
Query: 62 GGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKL 121
GG+ +E++ K++F FG+++ ++ D T+ RGF FIT+ E+ V LL +
Sbjct: 120 GGLSPDTSEEQIKEYFGAFGEIENIELPMDTKTNERRGFCFITYTDEEPVKKLL-ESRYH 178
Query: 122 ELAGAQVEVKKAEPKK 137
++ + E+K A+PK+
Sbjct: 179 QIGSGKCEIKVAQPKE 194
Score = 48.5 bits (114), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 45/80 (56%), Gaps = 6/80 (7%)
Query: 58 KIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAK 117
K+F+GG+ ++ + ++ +FG+V + I D T RSRGFGF+ F +V+ +
Sbjct: 31 KMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAASVEKV--- 87
Query: 118 GNKLELAGAQVEVKKAEPKK 137
LEL +++ K +PK+
Sbjct: 88 ---LELKEHKLDGKLIDPKR 104
>sp|Q9Z130|HNRDL_MOUSE Heterogeneous nuclear ribonucleoprotein D-like OS=Mus musculus
GN=Hnrpdl PE=1 SV=1
Length = 301
Score = 85.1 bits (209), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 50/136 (36%), Positives = 82/136 (60%), Gaps = 6/136 (4%)
Query: 3 DRKTGQPRGFGFVTYADPSVVDKVIE-DTHIINGKQVEIKRTIPKGAVGSKDFKTKKIFV 61
D TG+ RGFGFV + D + VDKV+E H ++GK ++ KR A+ K+ KK+FV
Sbjct: 63 DPVTGRSRGFGFVLFKDAASVDKVLELKEHKLDGKLIDPKRA---KALKGKE-PPKKVFV 118
Query: 62 GGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKL 121
GG+ +E++ K++F FG+++ ++ D T+ RGF FIT+ E+ V LL +
Sbjct: 119 GGLSPDTSEEQIKEYFGAFGEIENIELPMDTKTNERRGFCFITYTDEEPVKKLL-ESRYH 177
Query: 122 ELAGAQVEVKKAEPKK 137
++ + E+K A+PK+
Sbjct: 178 QIGSGKCEIKVAQPKE 193
Score = 48.9 bits (115), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 45/80 (56%), Gaps = 6/80 (7%)
Query: 58 KIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAK 117
K+F+GG+ ++ + ++ +FG+V + I D T RSRGFGF+ F +VD +
Sbjct: 30 KMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAASVDKV--- 86
Query: 118 GNKLELAGAQVEVKKAEPKK 137
LEL +++ K +PK+
Sbjct: 87 ---LELKEHKLDGKLIDPKR 103
>sp|Q5RBU8|ROA2_PONAB Heterogeneous nuclear ribonucleoproteins A2/B1 OS=Pongo abelii
GN=HNRNPA2B1 PE=2 SV=1
Length = 353
Score = 84.0 bits (206), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 47/136 (34%), Positives = 75/136 (55%), Gaps = 4/136 (2%)
Query: 1 MKDRKTGQPRGFGFVTYADPSVVDKVI-EDTHIINGKQVEIKRTIPKGAVGS--KDFKTK 57
M+D + + RGFGFVT++ + VD + H I+G+ VE KR + + G K
Sbjct: 53 MRDPASKRSRGFGFVTFSSMAEVDAAMAARPHSIDGRVVEPKRAVAREESGKPGAHVTVK 112
Query: 58 KIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAK 117
K+FVGGI E +D+F ++G + +I+ D + + RGFGF+TFD VD ++ +
Sbjct: 113 KLFVGGIKEDTEEHHLRDYFEEYGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKIVLQ 172
Query: 118 GNKLELAGAQVEVKKA 133
+ + G EV+KA
Sbjct: 173 KHHT-INGHNAEVRKA 187
Score = 57.8 bits (138), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 52/91 (57%), Gaps = 1/91 (1%)
Query: 43 TIPKGAVGSKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGF 102
T+P + + +K+F+GG+ E+ ++++ Q+G + + +MRD ++ RSRGFGF
Sbjct: 7 TVPLERKKREKEQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGF 66
Query: 103 ITFDTEQAVDDLLAKGNKLELAGAQVEVKKA 133
+TF + VD +A + G VE K+A
Sbjct: 67 VTFSSMAEVDAAMA-ARPHSIDGRVVEPKRA 96
>sp|P48810|RB87F_DROME Heterogeneous nuclear ribonucleoprotein 87F OS=Drosophila
melanogaster GN=Hrb87F PE=2 SV=2
Length = 385
Score = 84.0 bits (206), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 49/140 (35%), Positives = 77/140 (55%), Gaps = 4/140 (2%)
Query: 1 MKDRKTGQPRGFGFVTYADPSVVDKVIE-DTHIINGKQVEIKRTIPKGAVGSKD--FKTK 57
MKD KT + RGFGF+TY+ ++D H I+G+ VE KR +P+ + S + K
Sbjct: 56 MKDPKTKRSRGFGFITYSQSYMIDNAQNARPHKIDGRTVEPKRAVPRQEIDSPNAGATVK 115
Query: 58 KIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAK 117
K+FVGG+ +E+ +++F FG + I+ D T + RGF FI FD VD ++ +
Sbjct: 116 KLFVGGLRDDHDEECLREYFKDFGQIVSVNIVSDKDTGKKRGFAFIEFDDYDPVDKIILQ 175
Query: 118 GNKLELAGAQVEVKKAEPKK 137
+ ++VKKA K+
Sbjct: 176 KTH-SIKNKTLDVKKAIAKQ 194
Score = 52.0 bits (123), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 52/84 (61%), Gaps = 3/84 (3%)
Query: 55 KTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDL 114
+ +K+F+GG+ +D K F ++G++ + +M+D T RSRGFGFIT+ +D+
Sbjct: 22 QLRKLFIGGLDYRTTDDGLKAHFEKWGNIVDVVVMKDPKTKRSRGFGFITYSQSYMIDNA 81
Query: 115 L-AKGNKLELAGAQVEVKKAEPKK 137
A+ +K++ G VE K+A P++
Sbjct: 82 QNARPHKID--GRTVEPKRAVPRQ 103
>sp|Q9TTV2|ROA2_SAGOE Heterogeneous nuclear ribonucleoproteins A2/B1 OS=Saguinus oedipus
GN=HNRNPA2B1 PE=1 SV=1
Length = 341
Score = 83.6 bits (205), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 49/149 (32%), Positives = 78/149 (52%), Gaps = 4/149 (2%)
Query: 1 MKDRKTGQPRGFGFVTYADPSVVDKVI-EDTHIINGKQVEIKRTIPKGAVGS--KDFKTK 57
M+D + + RGFGFVT++ + VD + H I+G+ VE KR + + G K
Sbjct: 41 MRDPASKRSRGFGFVTFSSMAEVDAAMAARPHSIDGRVVEPKRAVAREESGKPGAHVTVK 100
Query: 58 KIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAK 117
K+FVGGI E +D+F ++G + +I+ D + + RGFGF+TFD VD ++ +
Sbjct: 101 KLFVGGIKEDTEEHHLRDYFAEYGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKIVLQ 160
Query: 118 GNKLELAGAQVEVKKAEPKKPNLPQPSYR 146
+ G EV+KA ++ S R
Sbjct: 161 KYHT-INGHNAEVRKALSRQEMQEVQSSR 188
Score = 56.6 bits (135), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 47/77 (61%), Gaps = 1/77 (1%)
Query: 57 KKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLA 116
+K+F+GG+ E+ ++++ Q+G + + +MRD ++ RSRGFGF+TF + VD +A
Sbjct: 9 RKLFIGGLSFQTTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMA 68
Query: 117 KGNKLELAGAQVEVKKA 133
+ G VE K+A
Sbjct: 69 -ARPHSIDGRVVEPKRA 84
>sp|Q2HJ60|ROA2_BOVIN Heterogeneous nuclear ribonucleoproteins A2/B1 OS=Bos taurus
GN=HNRNPA2B1 PE=2 SV=1
Length = 341
Score = 83.2 bits (204), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 49/149 (32%), Positives = 78/149 (52%), Gaps = 4/149 (2%)
Query: 1 MKDRKTGQPRGFGFVTYADPSVVDKVI-EDTHIINGKQVEIKRTIPKGAVGS--KDFKTK 57
M+D + + RGFGFVT++ + VD + H I+G+ VE KR + + G K
Sbjct: 41 MRDPASKRSRGFGFVTFSSMAEVDAAMAARPHSIDGRVVEPKRAVAREESGKPGAHVTVK 100
Query: 58 KIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAK 117
K+FVGGI E +D+F ++G + +I+ D + + RGFGF+TFD VD ++ +
Sbjct: 101 KLFVGGIKEDTEEHHLRDYFEEYGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKIVLQ 160
Query: 118 GNKLELAGAQVEVKKAEPKKPNLPQPSYR 146
+ G EV+KA ++ S R
Sbjct: 161 KYHT-INGHNAEVRKALSRQEMQEVQSSR 188
Score = 56.6 bits (135), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 47/77 (61%), Gaps = 1/77 (1%)
Query: 57 KKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLA 116
+K+F+GG+ E+ ++++ Q+G + + +MRD ++ RSRGFGF+TF + VD +A
Sbjct: 9 RKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMA 68
Query: 117 KGNKLELAGAQVEVKKA 133
+ G VE K+A
Sbjct: 69 -ARPHSIDGRVVEPKRA 84
>sp|Q640A2|HNRDL_XENTR Heterogeneous nuclear ribonucleoprotein D-like OS=Xenopus
tropicalis GN=hnrpdl PE=2 SV=1
Length = 297
Score = 83.2 bits (204), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 49/136 (36%), Positives = 79/136 (58%), Gaps = 6/136 (4%)
Query: 3 DRKTGQPRGFGFVTYADPSVVDKVIE-DTHIINGKQVEIKRTIPKGAVGSKDFKTKKIFV 61
D TG+ RGFGFV + D VDKV+E H ++GK ++ KR A+ K+ KK+FV
Sbjct: 60 DPVTGRSRGFGFVLFKDAVSVDKVLETKEHKLDGKLIDPKRA---KALKGKE-PPKKVFV 115
Query: 62 GGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKL 121
GG+ E++ K +F FG+++ ++ D T+ RGF F+T+ E+ V LL +
Sbjct: 116 GGLSPETTEEQIKQYFGGFGEIENIELPMDTKTNERRGFCFVTYTGEEPVKKLL-ESRFH 174
Query: 122 ELAGAQVEVKKAEPKK 137
++ + E+K A+PK+
Sbjct: 175 QIGTGKCEIKVAQPKE 190
Score = 51.6 bits (122), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 48/81 (59%), Gaps = 3/81 (3%)
Query: 58 KIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLL-A 116
K+F+GG+ ++ + ++ +FG+V + I D T RSRGFGF+ F +VD +L
Sbjct: 27 KMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAVSVDKVLET 86
Query: 117 KGNKLELAGAQVEVKKAEPKK 137
K +KL+ G ++ K+A+ K
Sbjct: 87 KEHKLD--GKLIDPKRAKALK 105
>sp|Q6URK4|ROA3_RAT Heterogeneous nuclear ribonucleoprotein A3 OS=Rattus norvegicus
GN=Hnrnpa3 PE=1 SV=1
Length = 379
Score = 83.2 bits (204), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 52/145 (35%), Positives = 77/145 (53%), Gaps = 14/145 (9%)
Query: 1 MKDRKTGQPRGFGFVTYADPSVVD-KVIEDTHIINGKQVEIKRTIPKGAVGSKD------ 53
M+D +T + RGFGFVTY+ VD + H ++G+ VE PK AV +D
Sbjct: 67 MRDPQTKRSRGFGFVTYSCVEEVDAAMCARPHKVDGRVVE-----PKRAVSREDSVKPGA 121
Query: 54 -FKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVD 112
KKIFVGGI E +D+F ++G ++ ++M D + + RGF F+TFD VD
Sbjct: 122 HLTVKKIFVGGIKEDTEEYNLRDYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVD 181
Query: 113 DLLAKGNKLELAGAQVEVKKAEPKK 137
++ + + G EVKKA K+
Sbjct: 182 KIVVQKYHT-INGHNCEVKKALSKQ 205
Score = 54.7 bits (130), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 50/80 (62%), Gaps = 3/80 (3%)
Query: 55 KTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVD-D 113
+ +K+F+GG+ +D ++ F ++G + + +MRD T RSRGFGF+T+ + VD
Sbjct: 33 QLRKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDAA 92
Query: 114 LLAKGNKLELAGAQVEVKKA 133
+ A+ +K++ G VE K+A
Sbjct: 93 MCARPHKVD--GRVVEPKRA 110
>sp|Q8BG05|ROA3_MOUSE Heterogeneous nuclear ribonucleoprotein A3 OS=Mus musculus
GN=Hnrnpa3 PE=1 SV=1
Length = 379
Score = 83.2 bits (204), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 52/145 (35%), Positives = 77/145 (53%), Gaps = 14/145 (9%)
Query: 1 MKDRKTGQPRGFGFVTYADPSVVD-KVIEDTHIINGKQVEIKRTIPKGAVGSKD------ 53
M+D +T + RGFGFVTY+ VD + H ++G+ VE PK AV +D
Sbjct: 67 MRDPQTKRSRGFGFVTYSCVEEVDAAMCARPHKVDGRVVE-----PKRAVSREDSVKPGA 121
Query: 54 -FKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVD 112
KKIFVGGI E +D+F ++G ++ ++M D + + RGF F+TFD VD
Sbjct: 122 HLTVKKIFVGGIKEDTEEYNLRDYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVD 181
Query: 113 DLLAKGNKLELAGAQVEVKKAEPKK 137
++ + + G EVKKA K+
Sbjct: 182 KIVVQKYHT-INGHNCEVKKALSKQ 205
Score = 54.7 bits (130), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 50/80 (62%), Gaps = 3/80 (3%)
Query: 55 KTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVD-D 113
+ +K+F+GG+ +D ++ F ++G + + +MRD T RSRGFGF+T+ + VD
Sbjct: 33 QLRKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDAA 92
Query: 114 LLAKGNKLELAGAQVEVKKA 133
+ A+ +K++ G VE K+A
Sbjct: 93 MCARPHKVD--GRVVEPKRA 110
>sp|P51991|ROA3_HUMAN Heterogeneous nuclear ribonucleoprotein A3 OS=Homo sapiens
GN=HNRNPA3 PE=1 SV=2
Length = 378
Score = 83.2 bits (204), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 52/145 (35%), Positives = 77/145 (53%), Gaps = 14/145 (9%)
Query: 1 MKDRKTGQPRGFGFVTYADPSVVD-KVIEDTHIINGKQVEIKRTIPKGAVGSKD------ 53
M+D +T + RGFGFVTY+ VD + H ++G+ VE PK AV +D
Sbjct: 67 MRDPQTKRSRGFGFVTYSCVEEVDAAMCARPHKVDGRVVE-----PKRAVSREDSVKPGA 121
Query: 54 -FKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVD 112
KKIFVGGI E +D+F ++G ++ ++M D + + RGF F+TFD VD
Sbjct: 122 HLTVKKIFVGGIKEDTEEYNLRDYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVD 181
Query: 113 DLLAKGNKLELAGAQVEVKKAEPKK 137
++ + + G EVKKA K+
Sbjct: 182 KIVVQKYHT-INGHNCEVKKALSKQ 205
Score = 54.7 bits (130), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 50/80 (62%), Gaps = 3/80 (3%)
Query: 55 KTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVD-D 113
+ +K+F+GG+ +D ++ F ++G + + +MRD T RSRGFGF+T+ + VD
Sbjct: 33 QLRKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDAA 92
Query: 114 LLAKGNKLELAGAQVEVKKA 133
+ A+ +K++ G VE K+A
Sbjct: 93 MCARPHKVD--GRVVEPKRA 110
>sp|P51992|RO32_XENLA Heterogeneous nuclear ribonucleoprotein A3 homolog 2 OS=Xenopus
laevis PE=2 SV=1
Length = 385
Score = 82.4 bits (202), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 53/146 (36%), Positives = 77/146 (52%), Gaps = 16/146 (10%)
Query: 1 MKDRKTGQPRGFGFVTYADPSVVDKVIE-DTHIINGKQVEIKRTIPKGAVGSKD------ 53
M+D +T + RGFGFVTY+ VD + H ++G+ VE PK AV +D
Sbjct: 59 MRDPQTKRSRGFGFVTYSCVEEVDASMSARPHKVDGRVVE-----PKRAVSREDSARPGA 113
Query: 54 -FKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVD 112
KKIFVGGI E +D+F +G ++ ++M D + + RGF F+TFD VD
Sbjct: 114 HLTVKKIFVGGIKEDTEEYHLRDYFEGYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVD 173
Query: 113 DLLA-KGNKLELAGAQVEVKKAEPKK 137
++ K + + L EVKKA K+
Sbjct: 174 KIVVQKYHTINLHNC--EVKKALSKQ 197
Score = 57.0 bits (136), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 50/80 (62%), Gaps = 3/80 (3%)
Query: 55 KTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVD-D 113
+ +K+F+GG+ +D ++ F Q+G + + +MRD T RSRGFGF+T+ + VD
Sbjct: 25 QLRKLFIGGLSFETTDDSLREHFEQWGKLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDAS 84
Query: 114 LLAKGNKLELAGAQVEVKKA 133
+ A+ +K++ G VE K+A
Sbjct: 85 MSARPHKVD--GRVVEPKRA 102
>sp|P17130|ROA1_XENLA Heterogeneous nuclear ribonucleoproteins A1 homolog OS=Xenopus
laevis GN=hnrnpa1 PE=2 SV=1
Length = 365
Score = 82.4 bits (202), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 45/125 (36%), Positives = 68/125 (54%), Gaps = 13/125 (10%)
Query: 1 MKDRKTGQPRGFGFVTYADPSVVDKVIE-DTHIINGKQVEIKRTIPKGAVGSKD------ 53
M+D + + RGFGFVTY VD + H ++G+ VE PK AV +D
Sbjct: 46 MRDPNSKRSRGFGFVTYLSTDEVDAAMTARPHKVDGRVVE-----PKRAVSREDSSRPGA 100
Query: 54 -FKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVD 112
KKIFVGGI ED +++F Q+G ++ +IM D + + RGF F+TF+ +VD
Sbjct: 101 HLTVKKIFVGGIKEDTEEDHLREYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFEDHDSVD 160
Query: 113 DLLAK 117
++ +
Sbjct: 161 KIVIQ 165
Score = 53.5 bits (127), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 51/80 (63%), Gaps = 3/80 (3%)
Query: 55 KTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVD-D 113
+ +K+F+GG+ ++ ++ F Q+G + + +MRD ++ RSRGFGF+T+ + VD
Sbjct: 12 QLRKLFIGGLSFETTDESLREHFEQWGTLTDCVVMRDPNSKRSRGFGFVTYLSTDEVDAA 71
Query: 114 LLAKGNKLELAGAQVEVKKA 133
+ A+ +K++ G VE K+A
Sbjct: 72 MTARPHKVD--GRVVEPKRA 89
>sp|O88569|ROA2_MOUSE Heterogeneous nuclear ribonucleoproteins A2/B1 OS=Mus musculus
GN=Hnrnpa2b1 PE=1 SV=2
Length = 353
Score = 82.0 bits (201), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 47/136 (34%), Positives = 74/136 (54%), Gaps = 4/136 (2%)
Query: 1 MKDRKTGQPRGFGFVTYADPSVVDKVI-EDTHIINGKQVEIKRTIPKGAVGS--KDFKTK 57
M+D + + RGFGFVT++ + VD + H I+G+ VE KR + + G K
Sbjct: 53 MRDPASKRSRGFGFVTFSSMAEVDAAMAARPHSIDGRVVEPKRAVAREESGKPGAHVTVK 112
Query: 58 KIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAK 117
K+FVGGI E +D+F ++G + +I+ D + + RGFGF+TFD VD ++ +
Sbjct: 113 KLFVGGIKEDTEEHHLRDYFEEYGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKIVLQ 172
Query: 118 GNKLELAGAQVEVKKA 133
+ G EV+KA
Sbjct: 173 KYHT-INGHNAEVRKA 187
Score = 57.8 bits (138), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 52/91 (57%), Gaps = 1/91 (1%)
Query: 43 TIPKGAVGSKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGF 102
T+P + + +K+F+GG+ E+ ++++ Q+G + + +MRD ++ RSRGFGF
Sbjct: 7 TVPLERKKREKEQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGF 66
Query: 103 ITFDTEQAVDDLLAKGNKLELAGAQVEVKKA 133
+TF + VD +A + G VE K+A
Sbjct: 67 VTFSSMAEVDAAMA-ARPHSIDGRVVEPKRA 96
>sp|P22626|ROA2_HUMAN Heterogeneous nuclear ribonucleoproteins A2/B1 OS=Homo sapiens
GN=HNRNPA2B1 PE=1 SV=2
Length = 353
Score = 82.0 bits (201), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 47/136 (34%), Positives = 74/136 (54%), Gaps = 4/136 (2%)
Query: 1 MKDRKTGQPRGFGFVTYADPSVVDKVI-EDTHIINGKQVEIKRTIPKGAVGS--KDFKTK 57
M+D + + RGFGFVT++ + VD + H I+G+ VE KR + + G K
Sbjct: 53 MRDPASKRSRGFGFVTFSSMAEVDAAMAARPHSIDGRVVEPKRAVAREESGKPGAHVTVK 112
Query: 58 KIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAK 117
K+FVGGI E +D+F ++G + +I+ D + + RGFGF+TFD VD ++ +
Sbjct: 113 KLFVGGIKEDTEEHHLRDYFEEYGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKIVLQ 172
Query: 118 GNKLELAGAQVEVKKA 133
+ G EV+KA
Sbjct: 173 KYHT-INGHNAEVRKA 187
Score = 57.8 bits (138), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 52/91 (57%), Gaps = 1/91 (1%)
Query: 43 TIPKGAVGSKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGF 102
T+P + + +K+F+GG+ E+ ++++ Q+G + + +MRD ++ RSRGFGF
Sbjct: 7 TVPLERKKREKEQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGF 66
Query: 103 ITFDTEQAVDDLLAKGNKLELAGAQVEVKKA 133
+TF + VD +A + G VE K+A
Sbjct: 67 VTFSSMAEVDAAMA-ARPHSIDGRVVEPKRA 96
>sp|A7VJC2|ROA2_RAT Heterogeneous nuclear ribonucleoproteins A2/B1 OS=Rattus norvegicus
GN=Hnrnpa2b1 PE=1 SV=1
Length = 353
Score = 81.6 bits (200), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 47/136 (34%), Positives = 73/136 (53%), Gaps = 4/136 (2%)
Query: 1 MKDRKTGQPRGFGFVTYADPSVVDKVI-EDTHIINGKQVEIKRTIPKGAVGS--KDFKTK 57
M+D + + RGFGFVT++ + VD + H I+G+ VE KR + + G K
Sbjct: 53 MRDPASKRSRGFGFVTFSSMAEVDAAMAARPHSIDGRVVEPKRAVAREESGKPGAHVTVK 112
Query: 58 KIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAK 117
K+FVGGI E +D+F ++G + +I+ D + + RGFGF+TFD VD + +
Sbjct: 113 KLFVGGIKEDTEEHHLRDYFEEYGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKIFLQ 172
Query: 118 GNKLELAGAQVEVKKA 133
+ G EV+KA
Sbjct: 173 KYHT-INGHNAEVRKA 187
Score = 57.8 bits (138), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 52/91 (57%), Gaps = 1/91 (1%)
Query: 43 TIPKGAVGSKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGF 102
T+P + + +K+F+GG+ E+ ++++ Q+G + + +MRD ++ RSRGFGF
Sbjct: 7 TVPLERKKREKEQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGF 66
Query: 103 ITFDTEQAVDDLLAKGNKLELAGAQVEVKKA 133
+TF + VD +A + G VE K+A
Sbjct: 67 VTFSSMAEVDAAMA-ARPHSIDGRVVEPKRA 96
>sp|Q9JJ54|HNRPD_RAT Heterogeneous nuclear ribonucleoprotein D0 OS=Rattus norvegicus
GN=Hnrnpd PE=1 SV=1
Length = 353
Score = 81.3 bits (199), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 47/130 (36%), Positives = 80/130 (61%), Gaps = 6/130 (4%)
Query: 3 DRKTGQPRGFGFVTYADPSVVDKVI-EDTHIINGKQVEIKRTIPKGAVGSKDFKTKKIFV 61
D TG+ RGFGFV + + VDKV+ + H +NGK ++ KR A+ +K+ KKIFV
Sbjct: 129 DPITGRSRGFGFVLFKESESVDKVMDQKEHKLNGKVIDPKRA---KAMKTKE-PVKKIFV 184
Query: 62 GGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKG-NK 120
GG+ E++ +++F FG+V+ ++ D+ T++ RGF FITF E+ V ++ K +
Sbjct: 185 GGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEKKYHN 244
Query: 121 LELAGAQVEV 130
+ L+ +++V
Sbjct: 245 VGLSKCEIKV 254
Score = 57.8 bits (138), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 34/105 (32%), Positives = 55/105 (52%), Gaps = 15/105 (14%)
Query: 58 KIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAK 117
K+F+GG+ + + KD+F +FGDV + + D T RSRGFGF+ F ++VD ++ +
Sbjct: 96 KMFIGGLSWDTTKKDLKDYFSKFGDVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQ 155
Query: 118 GNKLELAGAQVEVKKA------EPKK--------PNLPQPSYRRY 148
+L G ++ K+A EP K P+ P+ R Y
Sbjct: 156 KEH-KLNGKVIDPKRAKAMKTKEPVKKIFVGGLSPDTPEEKIREY 199
>sp|Q5R5W2|TADBP_PONAB TAR DNA-binding protein 43 OS=Pongo abelii GN=TARDBP PE=2 SV=1
Length = 414
Score = 80.9 bits (198), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 46/136 (33%), Positives = 70/136 (51%), Gaps = 10/136 (7%)
Query: 2 KDRKTGQPRGFGFVTYADPSVVDKVIEDTHIINGKQVEIKRTIPKGAVGSKD-FKTKKIF 60
KD KTG +GFGFV + + KV+ H+I+G+ + K +P + +++K+F
Sbjct: 137 KDLKTGHSKGFGFVRFTEYETQVKVMSQRHMIDGRWCDCK--LPNSKQSQDEPLRSRKVF 194
Query: 61 VGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNK 120
VG + EDE ++FF Q+GDV + I + R F F+TF +Q L G
Sbjct: 195 VGRCTEDMTEDELREFFSQYGDVMDVFIPKPF-----RAFAFVTFADDQIAQSLC--GED 247
Query: 121 LELAGAQVEVKKAEPK 136
L + G V + AEPK
Sbjct: 248 LIIKGISVHISNAEPK 263
Score = 46.6 bits (109), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 36/68 (52%), Gaps = 9/68 (13%)
Query: 38 VEIKRTIPKGAVGSKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRS 97
V++KR + K T + V G+P E + K++F FG+V Q+ +D T S
Sbjct: 94 VKVKRAVQK---------TSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHS 144
Query: 98 RGFGFITF 105
+GFGF+ F
Sbjct: 145 KGFGFVRF 152
>sp|Q13148|TADBP_HUMAN TAR DNA-binding protein 43 OS=Homo sapiens GN=TARDBP PE=1 SV=1
Length = 414
Score = 80.9 bits (198), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 46/136 (33%), Positives = 70/136 (51%), Gaps = 10/136 (7%)
Query: 2 KDRKTGQPRGFGFVTYADPSVVDKVIEDTHIINGKQVEIKRTIPKGAVGSKD-FKTKKIF 60
KD KTG +GFGFV + + KV+ H+I+G+ + K +P + +++K+F
Sbjct: 137 KDLKTGHSKGFGFVRFTEYETQVKVMSQRHMIDGRWCDCK--LPNSKQSQDEPLRSRKVF 194
Query: 61 VGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNK 120
VG + EDE ++FF Q+GDV + I + R F F+TF +Q L G
Sbjct: 195 VGRCTEDMTEDELREFFSQYGDVMDVFIPKPF-----RAFAFVTFADDQIAQSLC--GED 247
Query: 121 LELAGAQVEVKKAEPK 136
L + G V + AEPK
Sbjct: 248 LIIKGISVHISNAEPK 263
Score = 46.6 bits (109), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 36/68 (52%), Gaps = 9/68 (13%)
Query: 38 VEIKRTIPKGAVGSKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRS 97
V++KR + K T + V G+P E + K++F FG+V Q+ +D T S
Sbjct: 94 VKVKRAVQK---------TSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHS 144
Query: 98 RGFGFITF 105
+GFGF+ F
Sbjct: 145 KGFGFVRF 152
>sp|Q28F51|TADBP_XENTR TAR DNA-binding protein 43 OS=Xenopus tropicalis GN=tardbp PE=2
SV=1
Length = 409
Score = 80.9 bits (198), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 47/138 (34%), Positives = 71/138 (51%), Gaps = 9/138 (6%)
Query: 2 KDRKTGQPRGFGFVTYADPSVVDKVIEDTHIINGKQVEIKRTIPKGAVGSKDFKTKKIFV 61
KD KTG +GFGFV +AD KV+ H+I+G+ + K +P + +++K+FV
Sbjct: 138 KDAKTGHSKGFGFVRFADYETQVKVMSQRHMIDGRWCDCK--LPNSKSPDEPMRSRKVFV 195
Query: 62 GGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKL 121
G ++ +E + FF Q+G+V + I + R F F+TF +Q L G L
Sbjct: 196 GRCTEDMSAEELRQFFSQYGEVVDVFIPKPF-----RAFAFVTFADDQVAQSLC--GEDL 248
Query: 122 ELAGAQVEVKKAEPKKPN 139
+ G V V AEPK N
Sbjct: 249 IIKGVSVHVSTAEPKHNN 266
Score = 51.2 bits (121), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 31/111 (27%), Positives = 54/111 (48%), Gaps = 11/111 (9%)
Query: 38 VEIKRTIPKGAVGSKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRS 97
V+IKR + K T + V G+P E + KD+F FG+V Q+ +D T S
Sbjct: 95 VKIKRAVTK---------TSDLIVLGLPWKTTEQDLKDYFSTFGEVIMVQVKKDAKTGHS 145
Query: 98 RGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVKKAEPKKPNLPQPSYRRY 148
+GFGF+ F + ++++ + ++ G + K K P+ P S + +
Sbjct: 146 KGFGFVRFADYETQVKVMSQRHMID--GRWCDCKLPNSKSPDEPMRSRKVF 194
>sp|Q60668|HNRPD_MOUSE Heterogeneous nuclear ribonucleoprotein D0 OS=Mus musculus
GN=Hnrnpd PE=1 SV=2
Length = 355
Score = 80.9 bits (198), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 46/127 (36%), Positives = 79/127 (62%), Gaps = 6/127 (4%)
Query: 6 TGQPRGFGFVTYADPSVVDKVI-EDTHIINGKQVEIKRTIPKGAVGSKDFKTKKIFVGGI 64
TG+ RGFGFV + + VDKV+ + H +NGK ++ KR A+ +K+ KKIFVGG+
Sbjct: 134 TGRSRGFGFVLFKESESVDKVMDQKEHKLNGKVIDPKRA---KAMKTKE-PVKKIFVGGL 189
Query: 65 PSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKG-NKLEL 123
E++ +++F FG+V+ ++ D+ T++ RGF FITF E+ V ++ K + + L
Sbjct: 190 SPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEKKYHNVGL 249
Query: 124 AGAQVEV 130
+ +++V
Sbjct: 250 SKCEIKV 256
Score = 55.5 bits (132), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 33/105 (31%), Positives = 55/105 (52%), Gaps = 15/105 (14%)
Query: 58 KIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAK 117
K+F+GG+ + + KD+F +FG+V + + D T RSRGFGF+ F ++VD ++ +
Sbjct: 98 KMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQ 157
Query: 118 GNKLELAGAQVEVKKA------EPKK--------PNLPQPSYRRY 148
+L G ++ K+A EP K P+ P+ R Y
Sbjct: 158 KEH-KLNGKVIDPKRAKAMKTKEPVKKIFVGGLSPDTPEEKIREY 201
>sp|Q14103|HNRPD_HUMAN Heterogeneous nuclear ribonucleoprotein D0 OS=Homo sapiens
GN=HNRNPD PE=1 SV=1
Length = 355
Score = 80.5 bits (197), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 46/127 (36%), Positives = 79/127 (62%), Gaps = 6/127 (4%)
Query: 6 TGQPRGFGFVTYADPSVVDKVI-EDTHIINGKQVEIKRTIPKGAVGSKDFKTKKIFVGGI 64
TG+ RGFGFV + + VDKV+ + H +NGK ++ KR A+ +K+ KKIFVGG+
Sbjct: 134 TGRSRGFGFVLFKESESVDKVMDQKEHKLNGKVIDPKRA---KAMKTKE-PVKKIFVGGL 189
Query: 65 PSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKG-NKLEL 123
E++ +++F FG+V+ ++ D+ T++ RGF FITF E+ V ++ K + + L
Sbjct: 190 SPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEKKYHNVGL 249
Query: 124 AGAQVEV 130
+ +++V
Sbjct: 250 SKCEIKV 256
Score = 55.1 bits (131), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 33/105 (31%), Positives = 55/105 (52%), Gaps = 15/105 (14%)
Query: 58 KIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAK 117
K+F+GG+ + + KD+F +FG+V + + D T RSRGFGF+ F ++VD ++ +
Sbjct: 98 KMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQ 157
Query: 118 GNKLELAGAQVEVKKA------EPKK--------PNLPQPSYRRY 148
+L G ++ K+A EP K P+ P+ R Y
Sbjct: 158 KEH-KLNGKVIDPKRAKAMKTKEPVKKIFVGGLSPDTPEEKIREY 201
>sp|Q7ZX83|HNDLA_XENLA Heterogeneous nuclear ribonucleoprotein D-like-A OS=Xenopus laevis
GN=hnrpdl-a PE=2 SV=1
Length = 293
Score = 80.5 bits (197), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 49/136 (36%), Positives = 80/136 (58%), Gaps = 6/136 (4%)
Query: 3 DRKTGQPRGFGFVTYADPSVVDKVIE-DTHIINGKQVEIKRTIPKGAVGSKDFKTKKIFV 61
D TG+ RGFGFV + D VDKV+E + H ++GK ++ KR A+ K+ KK+FV
Sbjct: 60 DPVTGRSRGFGFVLFKDAVSVDKVLETNEHKLDGKLIDPKRA---KALKGKE-PPKKVFV 115
Query: 62 GGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKL 121
GG+ E++ K +F FG+++ ++ D T+ RGF F+T+ E+ V LL +
Sbjct: 116 GGLSPETTEEQIKQYFGGFGEIENIELPIDTKTNERRGFCFVTYTGEEPVKKLL-ESRFH 174
Query: 122 ELAGAQVEVKKAEPKK 137
++ + E+K A+PK+
Sbjct: 175 QIGTGKCEIKAAQPKE 190
Score = 51.6 bits (122), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 48/80 (60%), Gaps = 1/80 (1%)
Query: 58 KIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAK 117
K+F+GG+ ++ + ++ +FG+V + I D T RSRGFGF+ F +VD +L +
Sbjct: 27 KMFIGGLSWDTSKKDLTEYLSRFGEVLDCTIKTDPVTGRSRGFGFVLFKDAVSVDKVL-E 85
Query: 118 GNKLELAGAQVEVKKAEPKK 137
N+ +L G ++ K+A+ K
Sbjct: 86 TNEHKLDGKLIDPKRAKALK 105
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.314 0.144 0.445
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 167,835,699
Number of Sequences: 539616
Number of extensions: 10826068
Number of successful extensions: 222825
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 2310
Number of HSP's successfully gapped in prelim test: 1291
Number of HSP's that attempted gapping in prelim test: 49806
Number of HSP's gapped (non-prelim): 48744
length of query: 314
length of database: 191,569,459
effective HSP length: 117
effective length of query: 197
effective length of database: 128,434,387
effective search space: 25301574239
effective search space used: 25301574239
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 61 (28.1 bits)