Query 021295
Match_columns 314
No_of_seqs 358 out of 2253
Neff 8.6
Searched_HMMs 46136
Date Fri Mar 29 09:07:38 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021295.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/021295hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR01659 sex-lethal sex-letha 100.0 7.6E-28 1.7E-32 222.3 19.8 135 1-139 140-278 (346)
2 TIGR01645 half-pint poly-U bin 99.9 3.7E-24 8E-29 208.0 17.0 139 1-139 140-287 (612)
3 KOG0148 Apoptosis-promoting RN 99.9 5.3E-24 1.1E-28 182.3 14.3 133 1-139 95-241 (321)
4 TIGR01622 SF-CC1 splicing fact 99.9 7.9E-23 1.7E-27 197.4 18.2 137 1-137 122-267 (457)
5 TIGR01661 ELAV_HUD_SF ELAV/HuD 99.9 8.9E-23 1.9E-27 190.5 17.7 80 58-137 271-350 (352)
6 TIGR01648 hnRNP-R-Q heterogene 99.9 1.2E-21 2.6E-26 190.2 23.3 126 5-138 177-309 (578)
7 TIGR01661 ELAV_HUD_SF ELAV/HuD 99.9 4E-22 8.6E-27 186.2 16.6 133 1-137 36-172 (352)
8 KOG0144 RNA-binding protein CU 99.9 7.9E-23 1.7E-27 185.0 9.8 137 1-141 67-211 (510)
9 TIGR01642 U2AF_lg U2 snRNP aux 99.9 1.2E-21 2.7E-26 191.5 16.2 134 4-137 217-376 (509)
10 KOG0117 Heterogeneous nuclear 99.9 6.6E-22 1.4E-26 179.8 11.6 127 6-140 204-335 (506)
11 TIGR01628 PABP-1234 polyadenyl 99.9 5E-21 1.1E-25 189.4 15.7 133 1-136 33-167 (562)
12 KOG0117 Heterogeneous nuclear 99.9 6.7E-21 1.5E-25 173.3 14.2 129 1-139 116-251 (506)
13 PLN03134 glycine-rich RNA-bind 99.9 2.5E-20 5.3E-25 151.8 16.1 85 53-137 31-115 (144)
14 TIGR01628 PABP-1234 polyadenyl 99.9 7E-21 1.5E-25 188.4 15.3 133 5-138 214-366 (562)
15 KOG4205 RNA-binding protein mu 99.9 1.5E-21 3.2E-26 175.8 9.5 142 1-143 39-183 (311)
16 KOG0145 RNA-binding protein EL 99.8 4.7E-20 1E-24 157.3 9.9 133 1-137 74-210 (360)
17 KOG0127 Nucleolar protein fibr 99.8 1.2E-19 2.7E-24 168.6 12.8 138 1-139 38-199 (678)
18 TIGR01648 hnRNP-R-Q heterogene 99.8 1.9E-19 4.2E-24 174.9 13.7 126 1-137 91-223 (578)
19 KOG0131 Splicing factor 3b, su 99.8 1.2E-19 2.7E-24 147.3 9.9 134 2-138 43-179 (203)
20 KOG0127 Nucleolar protein fibr 99.8 7.8E-19 1.7E-23 163.3 15.3 134 5-138 153-380 (678)
21 TIGR01649 hnRNP-L_PTB hnRNP-L/ 99.8 2.7E-18 5.9E-23 166.6 17.3 128 8-139 36-177 (481)
22 KOG0124 Polypyrimidine tract-b 99.8 1.3E-18 2.8E-23 154.9 10.9 139 2-140 147-294 (544)
23 TIGR01649 hnRNP-L_PTB hnRNP-L/ 99.8 4.6E-18 1E-22 165.0 15.9 126 9-136 312-480 (481)
24 TIGR01642 U2AF_lg U2 snRNP aux 99.8 6.1E-18 1.3E-22 165.5 16.0 135 1-135 328-501 (509)
25 KOG0123 Polyadenylate-binding 99.7 2.3E-17 5E-22 153.5 13.7 122 2-138 32-155 (369)
26 TIGR01659 sex-lethal sex-letha 99.7 1.9E-17 4E-22 153.3 11.7 85 52-136 103-187 (346)
27 KOG0147 Transcriptional coacti 99.7 5.9E-18 1.3E-22 158.1 7.7 138 1-138 212-360 (549)
28 KOG0113 U1 small nuclear ribon 99.7 3.5E-17 7.7E-22 142.4 9.5 99 44-142 89-187 (335)
29 PF00076 RRM_1: RNA recognitio 99.7 2.2E-16 4.7E-21 112.1 9.7 70 59-129 1-70 (70)
30 KOG0110 RNA-binding protein (R 99.7 8.5E-17 1.8E-21 154.1 9.7 131 8-138 558-695 (725)
31 KOG0145 RNA-binding protein EL 99.7 7.5E-16 1.6E-20 131.8 13.9 136 1-136 160-358 (360)
32 KOG0109 RNA-binding protein LA 99.7 1.1E-16 2.5E-21 138.8 8.5 117 10-140 36-154 (346)
33 TIGR01622 SF-CC1 splicing fact 99.7 1.3E-15 2.9E-20 147.2 15.8 132 1-136 219-448 (457)
34 KOG0122 Translation initiation 99.7 2.9E-16 6.2E-21 133.3 9.6 82 55-136 188-269 (270)
35 KOG0149 Predicted RNA-binding 99.7 2E-16 4.4E-21 133.7 8.4 83 52-135 8-90 (247)
36 KOG0121 Nuclear cap-binding pr 99.7 2.4E-16 5.1E-21 121.1 7.2 83 54-136 34-116 (153)
37 KOG0125 Ataxin 2-binding prote 99.6 6.6E-16 1.4E-20 136.1 9.2 83 52-136 92-174 (376)
38 KOG0107 Alternative splicing f 99.6 1E-15 2.2E-20 123.9 8.4 77 55-136 9-85 (195)
39 PLN03120 nucleic acid binding 99.6 2.6E-15 5.7E-20 131.1 11.5 79 56-138 4-82 (260)
40 PF14259 RRM_6: RNA recognitio 99.6 2.6E-15 5.6E-20 107.0 9.3 70 59-129 1-70 (70)
41 TIGR01645 half-pint poly-U bin 99.6 1.3E-15 2.9E-20 148.6 7.2 82 54-135 105-186 (612)
42 KOG4211 Splicing factor hnRNP- 99.6 7E-15 1.5E-19 136.0 11.3 132 3-136 42-182 (510)
43 KOG4207 Predicted splicing fac 99.6 2.4E-15 5.3E-20 124.6 7.2 86 53-138 10-95 (256)
44 KOG0148 Apoptosis-promoting RN 99.6 7.3E-15 1.6E-19 126.4 9.6 101 37-137 42-143 (321)
45 KOG0130 RNA-binding protein RB 99.6 1.1E-14 2.4E-19 113.0 7.8 88 52-139 68-155 (170)
46 KOG0105 Alternative splicing f 99.6 2.4E-14 5.1E-19 116.9 9.7 78 55-135 5-82 (241)
47 PLN03213 repressor of silencin 99.5 2E-14 4.3E-19 132.8 10.0 81 52-136 6-88 (759)
48 PLN03121 nucleic acid binding 99.5 4.9E-14 1.1E-18 121.2 11.4 80 55-138 4-83 (243)
49 smart00362 RRM_2 RNA recogniti 99.5 5.6E-14 1.2E-18 99.1 9.9 72 58-131 1-72 (72)
50 KOG0126 Predicted RNA-binding 99.5 8E-16 1.7E-20 125.1 -0.0 83 54-136 33-115 (219)
51 KOG0111 Cyclophilin-type pepti 99.5 7.8E-15 1.7E-19 122.7 5.2 87 53-139 7-93 (298)
52 smart00360 RRM RNA recognition 99.5 7.6E-14 1.7E-18 98.0 9.1 71 61-131 1-71 (71)
53 KOG0146 RNA-binding protein ET 99.5 6E-14 1.3E-18 120.6 8.8 85 56-140 285-369 (371)
54 KOG0123 Polyadenylate-binding 99.5 6.2E-14 1.4E-18 130.6 9.4 136 3-139 201-352 (369)
55 KOG0144 RNA-binding protein CU 99.5 5.3E-14 1.2E-18 128.1 8.1 88 52-139 30-120 (510)
56 KOG0114 Predicted RNA-binding 99.5 1.9E-13 4.2E-18 101.4 9.4 82 52-136 14-95 (124)
57 KOG4212 RNA-binding protein hn 99.5 6.9E-14 1.5E-18 127.5 8.5 81 55-136 43-124 (608)
58 KOG0131 Splicing factor 3b, su 99.5 4.8E-14 1E-18 114.9 6.3 85 54-138 7-91 (203)
59 COG0724 RNA-binding proteins ( 99.5 3.5E-13 7.6E-18 119.7 12.5 80 56-135 115-194 (306)
60 cd00590 RRM RRM (RNA recogniti 99.5 5.6E-13 1.2E-17 94.4 10.3 74 58-132 1-74 (74)
61 KOG0108 mRNA cleavage and poly 99.4 2.9E-13 6.2E-18 127.4 8.5 82 57-138 19-100 (435)
62 KOG0105 Alternative splicing f 99.4 4.1E-12 8.8E-17 103.9 11.1 113 6-125 41-177 (241)
63 smart00361 RRM_1 RNA recogniti 99.4 3.5E-12 7.5E-17 90.9 8.6 62 70-131 2-70 (70)
64 KOG0109 RNA-binding protein LA 99.4 1.5E-12 3.2E-17 113.4 7.3 74 57-138 3-76 (346)
65 PF13893 RRM_5: RNA recognitio 99.3 9.9E-12 2.1E-16 84.5 7.9 56 73-133 1-56 (56)
66 KOG0415 Predicted peptidyl pro 99.3 3.4E-12 7.4E-17 113.8 6.9 84 53-136 236-319 (479)
67 KOG4206 Spliceosomal protein s 99.3 2.9E-11 6.2E-16 102.4 11.2 125 5-134 47-220 (221)
68 KOG0106 Alternative splicing f 99.3 2.4E-12 5.2E-17 109.7 4.6 116 9-132 34-167 (216)
69 KOG4205 RNA-binding protein mu 99.3 7E-12 1.5E-16 113.4 5.8 83 55-138 5-87 (311)
70 KOG0124 Polypyrimidine tract-b 99.2 6.3E-12 1.4E-16 112.5 4.9 79 56-134 113-191 (544)
71 KOG0147 Transcriptional coacti 99.2 6.7E-11 1.5E-15 111.2 10.2 130 1-135 311-527 (549)
72 KOG0153 Predicted RNA-binding 99.2 4.2E-11 9.2E-16 106.8 7.7 81 50-136 222-303 (377)
73 KOG4208 Nucleolar RNA-binding 99.2 6.8E-11 1.5E-15 98.6 8.3 85 52-136 45-130 (214)
74 KOG0110 RNA-binding protein (R 99.2 8.5E-11 1.8E-15 113.4 9.7 77 58-134 517-596 (725)
75 KOG0116 RasGAP SH3 binding pro 99.2 2.3E-10 5.1E-15 107.3 12.4 79 57-136 289-367 (419)
76 KOG0132 RNA polymerase II C-te 99.2 7.1E-11 1.5E-15 114.7 8.2 79 54-138 419-497 (894)
77 KOG4212 RNA-binding protein hn 99.1 5.8E-10 1.3E-14 102.2 12.9 127 5-132 81-290 (608)
78 KOG4206 Spliceosomal protein s 99.1 1.6E-10 3.6E-15 97.8 8.6 83 55-140 8-94 (221)
79 KOG1365 RNA-binding protein Fu 99.1 2.6E-11 5.7E-16 109.2 2.5 132 5-137 201-363 (508)
80 KOG0120 Splicing factor U2AF, 99.1 1.3E-10 2.9E-15 110.3 6.6 132 6-137 219-370 (500)
81 KOG0146 RNA-binding protein ET 99.1 1.6E-10 3.4E-15 99.8 6.3 84 54-138 17-103 (371)
82 KOG4211 Splicing factor hnRNP- 99.1 6.5E-10 1.4E-14 103.4 9.1 82 52-137 6-87 (510)
83 KOG1457 RNA binding protein (c 99.0 1.6E-09 3.5E-14 91.3 10.4 63 57-123 211-273 (284)
84 KOG0533 RRM motif-containing p 99.0 9.1E-10 2E-14 96.0 9.0 85 53-138 80-164 (243)
85 KOG4661 Hsp27-ERE-TATA-binding 99.0 5.2E-10 1.1E-14 105.4 7.6 81 56-136 405-485 (940)
86 KOG0226 RNA-binding proteins [ 99.0 2.9E-10 6.2E-15 97.6 5.3 131 6-136 136-270 (290)
87 KOG4209 Splicing factor RNPS1, 99.0 7.5E-10 1.6E-14 96.7 7.3 85 51-136 96-180 (231)
88 KOG0120 Splicing factor U2AF, 99.0 3.8E-09 8.1E-14 100.5 10.5 135 1-135 322-491 (500)
89 KOG1548 Transcription elongati 99.0 1.1E-08 2.4E-13 91.4 12.6 128 6-137 179-353 (382)
90 KOG1548 Transcription elongati 98.9 1E-08 2.2E-13 91.7 9.4 83 53-136 131-221 (382)
91 KOG4454 RNA binding protein (R 98.9 8.4E-10 1.8E-14 92.8 2.3 79 54-134 7-85 (267)
92 KOG1456 Heterogeneous nuclear 98.9 1.9E-08 4.1E-13 90.7 11.1 127 10-141 67-204 (494)
93 KOG4210 Nuclear localization s 98.8 4.5E-09 9.6E-14 94.8 6.4 133 4-137 124-265 (285)
94 KOG1995 Conserved Zn-finger pr 98.8 1.1E-08 2.4E-13 92.1 8.3 87 53-139 63-157 (351)
95 KOG1190 Polypyrimidine tract-b 98.8 8.1E-08 1.7E-12 87.7 11.7 121 11-135 336-490 (492)
96 KOG1457 RNA binding protein (c 98.7 1.1E-07 2.5E-12 80.3 10.6 86 53-138 31-120 (284)
97 PF04059 RRM_2: RNA recognitio 98.7 1.1E-07 2.4E-12 71.5 9.0 79 57-135 2-86 (97)
98 KOG0106 Alternative splicing f 98.7 1.7E-08 3.8E-13 86.2 4.5 72 57-136 2-73 (216)
99 KOG0129 Predicted RNA-binding 98.7 2.4E-07 5.1E-12 87.2 12.3 124 8-132 301-450 (520)
100 KOG4660 Protein Mei2, essentia 98.7 1.4E-08 3.1E-13 95.9 4.1 76 49-129 68-143 (549)
101 KOG1855 Predicted RNA-binding 98.7 3.3E-08 7.1E-13 90.7 6.2 95 38-132 213-320 (484)
102 KOG4849 mRNA cleavage factor I 98.6 4.5E-08 9.7E-13 87.6 5.9 80 55-134 79-160 (498)
103 KOG1365 RNA-binding protein Fu 98.6 7.8E-08 1.7E-12 87.1 5.6 126 5-132 97-239 (508)
104 COG0724 RNA-binding proteins ( 98.6 3.3E-07 7.3E-12 81.1 9.6 113 2-114 149-283 (306)
105 KOG0151 Predicted splicing reg 98.5 2.5E-07 5.4E-12 89.7 7.1 85 53-137 171-258 (877)
106 KOG1190 Polypyrimidine tract-b 98.5 1.9E-06 4E-11 79.0 11.8 81 56-141 297-378 (492)
107 KOG0128 RNA-binding protein SA 98.5 6.5E-08 1.4E-12 95.5 2.6 111 4-135 703-814 (881)
108 PLN03134 glycine-rich RNA-bind 98.5 3E-07 6.6E-12 74.9 6.1 47 1-47 67-115 (144)
109 KOG4307 RNA binding protein RB 98.4 4.5E-07 9.8E-12 87.8 5.9 124 10-134 352-512 (944)
110 KOG0149 Predicted RNA-binding 98.3 3.1E-07 6.7E-12 78.4 3.2 44 1-44 45-89 (247)
111 PF11608 Limkain-b1: Limkain b 98.3 1.9E-06 4.2E-11 62.0 6.6 70 57-136 3-77 (90)
112 KOG1456 Heterogeneous nuclear 98.2 4E-05 8.8E-10 69.6 13.2 114 10-125 325-474 (494)
113 PF08777 RRM_3: RNA binding mo 98.1 4.6E-06 9.9E-11 64.1 4.7 68 58-131 3-75 (105)
114 KOG4307 RNA binding protein RB 98.0 1.8E-05 3.9E-10 77.0 7.5 75 57-132 868-943 (944)
115 smart00361 RRM_1 RNA recogniti 98.0 1.2E-05 2.6E-10 57.0 4.9 39 2-40 27-69 (70)
116 COG5175 MOT2 Transcriptional r 97.9 3E-05 6.5E-10 69.5 7.2 84 52-135 110-202 (480)
117 PF14605 Nup35_RRM_2: Nup53/35 97.9 3.2E-05 6.9E-10 51.6 5.1 52 57-115 2-53 (53)
118 KOG2193 IGF-II mRNA-binding pr 97.9 1.2E-06 2.6E-11 80.4 -2.6 120 10-139 37-160 (584)
119 KOG0112 Large RNA-binding prot 97.9 2E-05 4.4E-10 78.7 5.5 120 6-137 409-532 (975)
120 KOG0108 mRNA cleavage and poly 97.8 8.6E-06 1.9E-10 77.3 2.7 46 1-46 51-98 (435)
121 KOG4208 Nucleolar RNA-binding 97.8 2.5E-05 5.4E-10 65.7 4.5 44 2-45 84-129 (214)
122 KOG0128 RNA-binding protein SA 97.8 8.6E-07 1.9E-11 87.8 -4.8 119 12-130 616-741 (881)
123 KOG4207 Predicted splicing fac 97.8 2E-05 4.4E-10 66.2 3.2 42 2-43 47-90 (256)
124 KOG0113 U1 small nuclear ribon 97.8 3.3E-05 7.3E-10 68.2 4.7 43 1-43 134-178 (335)
125 KOG0129 Predicted RNA-binding 97.7 9.7E-05 2.1E-09 69.9 7.5 67 53-119 256-327 (520)
126 KOG0111 Cyclophilin-type pepti 97.7 7.8E-05 1.7E-09 63.2 5.6 47 2-48 44-92 (298)
127 KOG0125 Ataxin 2-binding prote 97.7 4.9E-05 1.1E-09 68.1 4.3 52 6-57 132-185 (376)
128 KOG4454 RNA binding protein (R 97.6 1.5E-05 3.3E-10 67.4 0.8 111 1-130 41-157 (267)
129 KOG0115 RNA-binding protein p5 97.6 0.00015 3.2E-09 63.0 6.2 93 29-133 15-111 (275)
130 KOG0126 Predicted RNA-binding 97.6 2E-05 4.3E-10 65.0 0.5 46 1-46 68-115 (219)
131 KOG2314 Translation initiation 97.6 0.00037 8.1E-09 66.6 9.0 82 53-135 55-143 (698)
132 PF05172 Nup35_RRM: Nup53/35/4 97.5 0.00045 9.8E-09 52.3 7.3 78 55-134 5-90 (100)
133 KOG2202 U2 snRNP splicing fact 97.5 3.7E-05 8E-10 66.7 1.5 64 71-135 83-147 (260)
134 KOG0130 RNA-binding protein RB 97.4 0.00016 3.4E-09 56.9 3.8 47 2-48 106-154 (170)
135 KOG0121 Nuclear cap-binding pr 97.4 0.00021 4.6E-09 55.7 4.2 43 2-44 70-114 (153)
136 PF10309 DUF2414: Protein of u 97.4 0.0012 2.5E-08 45.3 7.2 57 54-118 3-62 (62)
137 KOG4676 Splicing factor, argin 97.4 0.00032 6.9E-09 64.3 5.7 79 56-134 7-88 (479)
138 PF07292 NID: Nmi/IFP 35 domai 97.4 0.00028 6E-09 52.0 4.4 66 13-78 1-74 (88)
139 KOG0107 Alternative splicing f 97.4 0.00016 3.4E-09 59.4 3.3 40 8-47 45-86 (195)
140 smart00360 RRM RNA recognition 97.4 0.00038 8.1E-09 47.8 4.9 38 3-40 31-70 (71)
141 PF13893 RRM_5: RNA recognitio 97.3 0.00049 1.1E-08 46.2 5.0 34 10-43 21-56 (56)
142 PF14259 RRM_6: RNA recognitio 97.3 0.0003 6.5E-09 49.4 3.8 37 2-39 32-70 (70)
143 KOG3152 TBP-binding protein, a 97.3 0.00011 2.3E-09 63.8 1.4 73 55-127 73-157 (278)
144 PF08952 DUF1866: Domain of un 97.2 0.0016 3.4E-08 52.5 7.5 74 54-136 25-107 (146)
145 KOG1996 mRNA splicing factor [ 97.2 0.0011 2.4E-08 58.7 7.0 65 70-134 300-365 (378)
146 KOG2591 c-Mpl binding protein, 97.1 0.001 2.2E-08 63.6 6.5 71 54-131 173-247 (684)
147 PLN03213 repressor of silencin 97.1 0.00024 5.1E-09 66.9 2.2 41 4-46 44-88 (759)
148 PF00076 RRM_1: RNA recognitio 97.1 0.00083 1.8E-08 46.7 4.3 34 5-38 34-69 (70)
149 KOG0921 Dosage compensation co 97.0 0.021 4.4E-07 58.3 14.5 14 6-19 898-911 (1282)
150 KOG2416 Acinus (induces apopto 97.0 0.00067 1.4E-08 65.3 4.0 79 51-135 439-521 (718)
151 PLN03120 nucleic acid binding 96.9 0.0037 8E-08 55.3 7.4 40 8-47 41-81 (260)
152 PF08675 RNA_bind: RNA binding 96.8 0.0038 8.3E-08 45.1 5.9 57 56-120 8-64 (87)
153 smart00362 RRM_2 RNA recogniti 96.8 0.0027 5.9E-08 43.5 4.7 34 7-40 36-71 (72)
154 KOG0226 RNA-binding proteins [ 96.7 0.00064 1.4E-08 59.0 1.4 43 1-43 223-267 (290)
155 KOG3973 Uncharacterized conser 96.5 0.023 5.1E-07 51.6 10.0 6 69-74 199-204 (465)
156 KOG2068 MOT2 transcription fac 96.4 0.00085 1.8E-08 60.7 0.2 84 53-136 74-163 (327)
157 cd00590 RRM RRM (RNA recogniti 96.4 0.008 1.7E-07 41.4 5.0 34 8-41 38-73 (74)
158 PF03467 Smg4_UPF3: Smg-4/UPF3 96.4 0.0092 2E-07 50.2 6.1 83 55-137 6-99 (176)
159 PF15023 DUF4523: Protein of u 96.3 0.021 4.5E-07 45.6 7.4 74 52-133 82-159 (166)
160 PF07576 BRAP2: BRCA1-associat 96.2 0.062 1.3E-06 41.5 9.3 69 55-125 12-81 (110)
161 KOG0112 Large RNA-binding prot 96.2 0.0015 3.3E-08 65.7 0.4 80 52-132 368-447 (975)
162 PF03880 DbpA: DbpA RNA bindin 95.9 0.028 6.1E-07 40.1 6.0 59 66-133 11-74 (74)
163 KOG4676 Splicing factor, argin 95.9 0.00041 8.9E-09 63.6 -4.5 64 57-125 152-215 (479)
164 KOG0415 Predicted peptidyl pro 95.5 0.0099 2.2E-07 54.1 2.9 45 1-45 272-318 (479)
165 KOG2253 U1 snRNP complex, subu 95.5 0.0098 2.1E-07 58.3 2.7 80 44-132 28-107 (668)
166 KOG2135 Proteins containing th 95.4 0.0094 2E-07 56.2 2.2 74 55-135 371-445 (526)
167 KOG2193 IGF-II mRNA-binding pr 95.3 0.016 3.5E-07 54.0 3.6 75 57-138 2-78 (584)
168 PLN03121 nucleic acid binding 95.3 0.04 8.7E-07 48.1 5.7 39 7-45 41-80 (243)
169 KOG4285 Mitotic phosphoprotein 95.2 0.12 2.6E-06 46.3 8.4 74 56-137 197-271 (350)
170 PF04847 Calcipressin: Calcipr 95.1 0.093 2E-06 44.4 7.2 63 68-136 7-71 (184)
171 KOG0132 RNA polymerase II C-te 95.0 0.028 6.1E-07 56.1 4.4 71 8-78 455-528 (894)
172 KOG4574 RNA-binding protein (c 94.7 0.023 5E-07 57.2 3.0 77 58-140 300-378 (1007)
173 KOG0921 Dosage compensation co 94.4 0.58 1.2E-05 48.3 11.9 10 127-136 1135-1144(1282)
174 KOG0153 Predicted RNA-binding 94.4 0.054 1.2E-06 49.4 4.3 36 10-45 264-302 (377)
175 KOG4210 Nuclear localization s 94.3 0.041 8.9E-07 49.9 3.5 81 55-135 87-167 (285)
176 KOG0804 Cytoplasmic Zn-finger 94.2 0.42 9.1E-06 45.2 9.8 69 55-125 73-142 (493)
177 KOG4660 Protein Mei2, essentia 93.8 0.092 2E-06 50.7 4.8 81 56-136 388-473 (549)
178 KOG4483 Uncharacterized conser 93.7 0.31 6.8E-06 45.3 7.9 59 52-117 387-446 (528)
179 KOG1995 Conserved Zn-finger pr 93.6 0.051 1.1E-06 49.7 2.6 45 2-46 108-154 (351)
180 PF14111 DUF4283: Domain of un 93.6 0.04 8.6E-07 44.8 1.7 83 9-91 54-140 (153)
181 KOG2318 Uncharacterized conser 93.4 0.26 5.7E-06 47.9 7.1 76 53-128 171-298 (650)
182 KOG4209 Splicing factor RNPS1, 93.1 0.12 2.5E-06 45.5 4.1 43 2-44 135-178 (231)
183 PF11767 SET_assoc: Histone ly 92.5 0.91 2E-05 31.6 7.1 55 67-130 11-65 (66)
184 KOG0114 Predicted RNA-binding 92.5 0.22 4.7E-06 37.8 4.1 41 5-45 52-94 (124)
185 KOG4661 Hsp27-ERE-TATA-binding 92.2 0.19 4.2E-06 48.7 4.5 44 1-44 438-483 (940)
186 PRK11634 ATP-dependent RNA hel 91.6 2.5 5.5E-05 42.8 11.9 61 66-135 497-562 (629)
187 PF04059 RRM_2: RNA recognitio 91.2 0.38 8.3E-06 36.2 4.3 28 2-29 37-64 (97)
188 KOG4410 5-formyltetrahydrofola 90.0 1.4 3.1E-05 39.3 7.4 58 57-119 331-395 (396)
189 KOG2891 Surface glycoprotein [ 89.3 0.68 1.5E-05 41.2 4.8 36 54-89 147-194 (445)
190 PF07530 PRE_C2HC: Associated 88.7 1.2 2.6E-05 31.2 4.9 63 71-136 2-65 (68)
191 smart00596 PRE_C2HC PRE_C2HC d 88.2 1.2 2.7E-05 31.0 4.6 63 71-136 2-65 (69)
192 KOG4213 RNA-binding protein La 87.3 0.84 1.8E-05 38.0 3.9 60 54-117 109-169 (205)
193 PF11608 Limkain-b1: Limkain b 86.8 1.3 2.9E-05 32.3 4.2 36 9-44 38-75 (90)
194 KOG2314 Translation initiation 86.2 0.38 8.2E-06 46.7 1.5 24 6-29 101-124 (698)
195 PF03468 XS: XS domain; Inter 85.1 2.2 4.7E-05 33.2 5.1 44 69-115 30-74 (116)
196 PF10567 Nab6_mRNP_bdg: RNA-re 83.8 2.1 4.6E-05 38.5 5.0 83 52-134 11-106 (309)
197 KOG3973 Uncharacterized conser 83.1 24 0.00052 32.6 11.4 8 71-78 243-250 (465)
198 KOG4019 Calcineurin-mediated s 82.4 1.3 2.8E-05 37.0 2.9 75 57-137 11-91 (193)
199 KOG0533 RRM motif-containing p 82.3 2.9 6.3E-05 36.9 5.3 43 5-47 119-163 (243)
200 PF02714 DUF221: Domain of unk 80.9 2.7 5.8E-05 38.7 4.9 57 13-79 1-57 (325)
201 KOG0116 RasGAP SH3 binding pro 79.4 2.1 4.6E-05 40.9 3.6 38 8-45 328-366 (419)
202 KOG3262 H/ACA small nucleolar 78.2 30 0.00066 29.1 9.5 20 70-89 88-107 (215)
203 COG5638 Uncharacterized conser 77.2 8.1 0.00018 36.4 6.6 37 54-90 144-185 (622)
204 PF08952 DUF1866: Domain of un 76.8 3.4 7.3E-05 33.5 3.6 35 13-47 73-108 (146)
205 PF07292 NID: Nmi/IFP 35 domai 76.7 3.5 7.6E-05 30.4 3.4 31 101-131 1-32 (88)
206 KOG4008 rRNA processing protei 75.8 3.7 7.9E-05 35.8 3.7 34 52-85 36-69 (261)
207 TIGR03636 L23_arch archaeal ri 74.9 10 0.00023 27.1 5.4 57 59-118 16-74 (77)
208 KOG2295 C2H2 Zn-finger protein 73.5 0.62 1.4E-05 45.2 -1.6 73 55-127 230-302 (648)
209 PRK14548 50S ribosomal protein 72.5 12 0.00025 27.4 5.2 56 60-118 24-81 (84)
210 PRK11901 hypothetical protein; 71.6 8.2 0.00018 35.4 5.1 55 64-120 250-306 (327)
211 PF15513 DUF4651: Domain of un 71.2 10 0.00022 25.9 4.2 20 71-90 9-28 (62)
212 PF00403 HMA: Heavy-metal-asso 70.3 21 0.00046 23.7 6.0 54 58-117 1-58 (62)
213 PRK10629 EnvZ/OmpR regulon mod 70.1 31 0.00068 27.2 7.6 59 68-134 50-109 (127)
214 PF02714 DUF221: Domain of unk 66.8 5.7 0.00012 36.5 3.2 39 101-141 1-39 (325)
215 PF14026 DUF4242: Protein of u 66.8 44 0.00095 23.8 8.3 57 59-117 3-66 (77)
216 KOG4365 Uncharacterized conser 65.6 0.95 2.1E-05 42.8 -2.1 76 57-133 4-79 (572)
217 KOG4849 mRNA cleavage factor I 61.3 5 0.00011 36.9 1.7 26 3-28 117-142 (498)
218 COG2242 CobL Precorrin-6B meth 60.5 1.1E+02 0.0023 26.1 10.1 56 19-78 67-122 (187)
219 COG3254 Uncharacterized conser 59.6 76 0.0016 24.1 7.7 45 70-117 26-70 (105)
220 PF14893 PNMA: PNMA 57.0 11 0.00024 34.9 3.2 25 55-79 17-41 (331)
221 KOG0023 Alcohol dehydrogenase, 56.6 1.3E+02 0.0028 27.9 9.8 31 103-134 326-356 (360)
222 PF07876 Dabb: Stress responsi 55.1 61 0.0013 23.5 6.6 57 59-115 4-71 (97)
223 PF14605 Nup35_RRM_2: Nup53/35 54.8 8.7 0.00019 25.3 1.6 20 8-27 34-53 (53)
224 PF15063 TC1: Thyroid cancer p 54.7 4.3 9.2E-05 28.8 0.1 53 54-118 23-78 (79)
225 PF02426 MIase: Muconolactone 54.6 86 0.0019 23.2 7.4 56 63-122 10-75 (91)
226 COG5193 LHP1 La protein, small 54.3 5.3 0.00011 37.5 0.6 62 55-116 173-244 (438)
227 KOG1295 Nonsense-mediated deca 54.2 20 0.00044 33.5 4.4 69 55-123 6-77 (376)
228 cd04908 ACT_Bt0572_1 N-termina 53.5 66 0.0014 21.6 8.4 45 69-117 14-59 (66)
229 CHL00123 rps6 ribosomal protei 53.5 58 0.0012 24.3 6.1 58 58-117 10-81 (97)
230 PTZ00191 60S ribosomal protein 52.2 43 0.00094 27.1 5.5 56 58-116 83-140 (145)
231 PF03439 Spt5-NGN: Early trans 52.1 36 0.00079 24.6 4.7 27 97-123 43-69 (84)
232 PF10915 DUF2709: Protein of u 51.2 1.5E+02 0.0033 25.2 8.6 63 15-82 47-118 (238)
233 COG0445 GidA Flavin-dependent 51.2 41 0.00089 33.5 6.1 40 52-91 297-336 (621)
234 PF09869 DUF2096: Uncharacteri 51.0 64 0.0014 26.7 6.3 47 63-119 118-164 (169)
235 cd06405 PB1_Mekk2_3 The PB1 do 50.9 88 0.0019 22.3 7.4 50 63-120 15-65 (79)
236 PF08734 GYD: GYD domain; Int 50.2 61 0.0013 23.8 5.7 45 70-118 22-67 (91)
237 PRK10905 cell division protein 49.8 31 0.00066 31.7 4.7 59 60-120 248-308 (328)
238 COG2608 CopZ Copper chaperone 49.4 68 0.0015 22.3 5.6 46 57-108 4-49 (71)
239 COG0837 Glk Glucokinase [Carbo 49.1 36 0.00078 31.1 5.0 70 10-91 34-104 (320)
240 KOG0256 1-aminocyclopropane-1- 48.8 59 0.0013 31.1 6.5 70 64-141 239-308 (471)
241 PRK06737 acetolactate synthase 48.4 88 0.0019 22.3 6.1 62 58-122 6-68 (76)
242 KOG0156 Cytochrome P450 CYP2 s 47.2 31 0.00068 33.9 4.8 59 60-128 36-97 (489)
243 PF04026 SpoVG: SpoVG; InterP 46.5 37 0.0008 24.8 3.9 26 82-107 2-27 (84)
244 PRK00911 dihydroxy-acid dehydr 45.8 62 0.0013 32.2 6.5 107 9-132 397-509 (552)
245 PF11215 DUF3010: Protein of u 45.4 1.2E+02 0.0027 24.3 7.0 45 53-100 29-79 (138)
246 KOG2187 tRNA uracil-5-methyltr 45.3 20 0.00044 35.1 3.0 40 98-137 63-102 (534)
247 PF14581 SseB_C: SseB protein 44.9 33 0.00071 25.9 3.7 65 70-135 21-90 (108)
248 KOG2202 U2 snRNP splicing fact 44.9 16 0.00035 32.3 2.1 36 8-43 108-145 (260)
249 PF00398 RrnaAD: Ribosomal RNA 44.7 52 0.0011 29.3 5.5 63 15-78 56-119 (262)
250 PRK13259 regulatory protein Sp 44.6 38 0.00082 25.3 3.8 27 82-108 2-28 (94)
251 PF10105 DUF2344: Uncharacteri 44.5 87 0.0019 26.5 6.5 36 55-91 108-143 (187)
252 PF11411 DNA_ligase_IV: DNA li 43.9 18 0.0004 21.8 1.6 16 66-81 19-34 (36)
253 COG0079 HisC Histidinol-phosph 43.5 40 0.00087 31.6 4.8 43 55-107 145-191 (356)
254 PF11767 SET_assoc: Histone ly 42.7 34 0.00075 23.7 3.1 16 14-29 37-52 (66)
255 KOG3424 40S ribosomal protein 42.4 86 0.0019 24.4 5.5 46 67-113 34-84 (132)
256 PHA01632 hypothetical protein 42.1 26 0.00056 23.3 2.2 21 59-79 19-39 (64)
257 KOG4388 Hormone-sensitive lipa 41.2 37 0.0008 34.0 4.1 61 53-119 786-852 (880)
258 KOG1999 RNA polymerase II tran 40.9 63 0.0014 34.1 5.9 28 97-124 209-236 (1024)
259 TIGR00110 ilvD dihydroxy-acid 40.3 45 0.00098 33.0 4.6 108 8-132 381-494 (535)
260 KOG2591 c-Mpl binding protein, 40.2 14 0.0003 36.3 1.1 29 14-42 216-248 (684)
261 KOG0738 AAA+-type ATPase [Post 40.2 27 0.00057 33.3 2.9 22 55-76 349-373 (491)
262 PF13193 AMP-binding_C: AMP-bi 39.6 1.2E+02 0.0026 20.7 5.8 52 72-124 1-54 (73)
263 cd04878 ACT_AHAS N-terminal AC 39.3 1.1E+02 0.0024 20.1 7.1 50 69-120 13-64 (72)
264 KOG0633 Histidinol phosphate a 38.8 80 0.0017 28.5 5.5 58 54-122 159-220 (375)
265 PRK13562 acetolactate synthase 38.8 1.5E+02 0.0033 21.6 7.0 62 58-122 6-69 (84)
266 PF01037 AsnC_trans_reg: AsnC 38.5 1.2E+02 0.0027 20.4 8.4 45 69-117 11-55 (74)
267 PF14350 Beta_protein: Beta pr 38.3 69 0.0015 29.7 5.5 38 68-113 137-175 (347)
268 KOG2943 Predicted glyoxalase [ 37.9 1.9E+02 0.0041 25.6 7.5 110 10-121 96-236 (299)
269 TIGR00755 ksgA dimethyladenosi 37.4 1.1E+02 0.0025 26.8 6.5 23 58-80 96-118 (253)
270 PF04847 Calcipressin: Calcipr 37.3 37 0.00081 28.7 3.2 33 13-45 34-70 (184)
271 PF14111 DUF4283: Domain of un 37.3 11 0.00025 30.1 0.0 63 68-136 29-92 (153)
272 PRK13016 dihydroxy-acid dehydr 37.3 1.9E+02 0.0041 29.1 8.4 109 8-132 404-520 (577)
273 COG0030 KsgA Dimethyladenosine 37.2 1.5E+02 0.0033 26.5 7.1 33 56-88 95-127 (259)
274 PF03439 Spt5-NGN: Early trans 36.6 38 0.00082 24.5 2.7 26 8-33 42-67 (84)
275 PF05172 Nup35_RRM: Nup53/35/4 36.3 42 0.00091 25.3 3.0 35 9-43 53-89 (100)
276 PRK08559 nusG transcription an 35.9 84 0.0018 25.5 5.0 35 83-122 36-70 (153)
277 smart00666 PB1 PB1 domain. Pho 35.9 1.4E+02 0.003 20.9 5.7 55 60-119 13-69 (81)
278 PF01282 Ribosomal_S24e: Ribos 35.6 1.7E+02 0.0036 21.2 6.0 47 67-114 12-63 (84)
279 COG5236 Uncharacterized conser 35.5 1.2E+02 0.0027 28.1 6.3 52 69-128 263-314 (493)
280 COG5353 Uncharacterized protei 35.2 2.1E+02 0.0045 23.3 6.8 56 57-112 88-156 (161)
281 KOG0151 Predicted splicing reg 35.1 42 0.00091 34.1 3.5 38 6-43 215-254 (877)
282 PF13291 ACT_4: ACT domain; PD 35.1 1.5E+02 0.0034 20.5 5.8 53 69-121 19-72 (80)
283 cd04905 ACT_CM-PDT C-terminal 34.6 1.6E+02 0.0035 20.5 7.0 51 69-120 14-68 (80)
284 KOG3262 H/ACA small nucleolar 34.5 2.9E+02 0.0062 23.4 10.3 17 101-117 81-97 (215)
285 COG0150 PurM Phosphoribosylami 34.5 11 0.00023 34.9 -0.5 48 70-121 275-322 (345)
286 PF12829 Mhr1: Transcriptional 34.5 72 0.0016 23.7 3.9 51 64-118 20-71 (91)
287 KOG0638 4-hydroxyphenylpyruvat 34.4 1.1E+02 0.0024 28.2 5.8 74 6-82 12-90 (381)
288 PF08777 RRM_3: RNA binding mo 34.4 22 0.00047 27.1 1.2 20 12-31 39-58 (105)
289 KOG3702 Nuclear polyadenylated 34.0 15 0.00032 36.8 0.3 73 56-129 511-583 (681)
290 PF09895 DUF2122: RecB-family 33.7 2.2E+02 0.0047 21.8 6.8 16 13-28 21-36 (106)
291 KOG2311 NAD/FAD-utilizing prot 33.4 87 0.0019 30.8 5.2 40 52-91 326-365 (679)
292 PRK11611 enhanced serine sensi 33.4 66 0.0014 28.6 4.2 78 55-135 128-214 (246)
293 CHL00030 rpl23 ribosomal prote 33.3 63 0.0014 24.0 3.5 34 58-91 20-55 (93)
294 COG2088 SpoVG Uncharacterized 33.3 63 0.0014 23.7 3.3 28 82-109 2-29 (95)
295 PRK12448 dihydroxy-acid dehydr 33.1 1.7E+02 0.0037 29.6 7.4 106 10-132 448-559 (615)
296 COG4010 Uncharacterized protei 32.8 1.1E+02 0.0024 24.7 4.9 46 63-118 118-163 (170)
297 PF13046 DUF3906: Protein of u 32.7 51 0.0011 22.7 2.6 34 68-103 30-63 (64)
298 PRK13010 purU formyltetrahydro 32.4 1.4E+02 0.0031 27.1 6.4 57 60-117 57-113 (289)
299 PRK11589 gcvR glycine cleavage 32.2 3.1E+02 0.0068 23.2 8.6 63 56-118 95-165 (190)
300 smart00195 DSPc Dual specifici 32.2 1.2E+02 0.0026 23.5 5.3 70 58-131 7-84 (138)
301 cd00027 BRCT Breast Cancer Sup 31.6 1.4E+02 0.0031 19.1 5.2 25 58-82 3-27 (72)
302 smart00650 rADc Ribosomal RNA 31.6 2.3E+02 0.005 23.0 7.1 23 57-79 78-100 (169)
303 cd04889 ACT_PDH-BS-like C-term 31.5 1.4E+02 0.0031 19.0 5.9 42 71-115 13-55 (56)
304 COG4232 Thiol:disulfide interc 31.4 87 0.0019 31.3 5.0 103 10-117 452-566 (569)
305 PRK05192 tRNA uridine 5-carbox 31.3 97 0.0021 31.4 5.5 40 52-91 297-336 (618)
306 PRK08655 prephenate dehydrogen 31.3 3.2E+02 0.007 26.3 9.0 54 64-117 369-427 (437)
307 PF05189 RTC_insert: RNA 3'-te 31.1 85 0.0019 23.5 4.0 47 58-104 12-63 (103)
308 PF00521 DNA_topoisoIV: DNA gy 30.8 77 0.0017 30.5 4.6 57 57-117 217-277 (426)
309 CHL00128 psbW photosystem II p 30.3 1.1E+02 0.0024 23.6 4.4 30 83-114 15-44 (113)
310 COG5470 Uncharacterized conser 30.0 1.1E+02 0.0024 22.8 4.2 43 72-116 24-71 (96)
311 PF08156 NOP5NT: NOP5NT (NUC12 30.0 16 0.00035 25.4 -0.2 37 71-118 27-64 (67)
312 cd06410 PB1_UP2 Uncharacterize 30.0 2.4E+02 0.0051 21.1 6.2 56 64-121 29-85 (97)
313 PRK06131 dihydroxy-acid dehydr 30.0 2.2E+02 0.0048 28.6 7.5 107 9-131 400-514 (571)
314 KOG4840 Predicted hydrolases o 29.9 99 0.0021 27.2 4.5 68 54-126 35-108 (299)
315 PF08544 GHMP_kinases_C: GHMP 29.7 1.9E+02 0.004 20.1 5.5 43 71-118 37-79 (85)
316 PRK13011 formyltetrahydrofolat 29.6 1.3E+02 0.0027 27.4 5.5 56 62-118 55-110 (286)
317 PRK00274 ksgA 16S ribosomal RN 29.4 1.6E+02 0.0034 26.3 6.1 23 57-79 106-128 (272)
318 PF10141 ssDNA-exonuc_C: Singl 29.3 3E+02 0.0065 23.2 7.5 58 52-116 48-105 (195)
319 PF12623 Hen1_L: RNA repair, l 29.3 1.4E+02 0.003 26.2 5.3 62 56-118 118-183 (245)
320 smart00434 TOP4c DNA Topoisome 28.7 1.1E+02 0.0024 29.6 5.3 59 57-116 233-295 (445)
321 KOG1888 Putative phosphoinosit 28.5 1.6E+02 0.0034 30.7 6.3 71 54-130 307-380 (868)
322 cd04909 ACT_PDH-BS C-terminal 28.5 1.8E+02 0.004 19.3 7.6 48 69-118 14-62 (69)
323 PRK11558 putative ssRNA endonu 28.4 1.8E+02 0.0039 21.8 5.2 50 56-108 27-76 (97)
324 PF09707 Cas_Cas2CT1978: CRISP 28.0 1.2E+02 0.0026 22.2 4.1 47 56-105 25-71 (86)
325 PF05336 DUF718: Domain of unk 27.7 1.8E+02 0.004 21.9 5.4 44 70-116 25-68 (106)
326 COG2061 ACT-domain-containing 27.7 3.5E+02 0.0075 22.3 9.0 69 55-124 87-157 (170)
327 cd04880 ACT_AAAH-PDT-like ACT 27.6 2E+02 0.0044 19.6 6.9 51 69-120 12-66 (75)
328 KOG1930 Focal adhesion protein 27.6 49 0.0011 31.5 2.5 21 68-88 396-416 (483)
329 PF11823 DUF3343: Protein of u 27.6 51 0.0011 23.0 2.1 24 100-123 3-26 (73)
330 PF00585 Thr_dehydrat_C: C-ter 27.5 1.7E+02 0.0038 21.4 5.0 60 59-120 12-73 (91)
331 PRK11230 glycolate oxidase sub 27.5 1.8E+02 0.0038 28.8 6.5 49 70-119 203-255 (499)
332 KOG0862 Synaptobrevin/VAMP-lik 27.4 37 0.00079 29.4 1.5 11 97-107 108-118 (216)
333 PF09848 DUF2075: Uncharacteri 27.2 2.7E+02 0.0058 25.9 7.5 63 9-71 192-260 (352)
334 PRK13982 bifunctional SbtC-lik 27.2 5.7E+02 0.012 25.1 9.8 94 17-118 232-332 (475)
335 PRK11895 ilvH acetolactate syn 26.8 2.3E+02 0.005 23.3 6.1 51 70-121 16-67 (161)
336 KOG1579 Homocysteine S-methylt 26.7 63 0.0014 29.7 2.9 62 64-134 137-198 (317)
337 PRK14443 acylphosphatase; Prov 26.5 1.9E+02 0.0041 21.4 5.1 10 69-78 51-60 (93)
338 cd00187 TOP4c DNA Topoisomeras 26.4 1.6E+02 0.0034 28.7 5.8 59 57-117 226-288 (445)
339 COG1098 VacB Predicted RNA bin 26.3 1.3E+02 0.0027 23.8 4.1 32 101-132 21-60 (129)
340 PHA02275 hypothetical protein 26.3 26 0.00057 26.2 0.4 46 68-113 23-68 (125)
341 COG0129 IlvD Dihydroxyacid deh 26.3 2.4E+02 0.0052 28.3 7.1 80 15-110 419-499 (575)
342 COG3955 Exopolysaccharide bios 26.2 2E+02 0.0042 24.2 5.4 102 16-130 59-162 (211)
343 KOG1175 Acyl-CoA synthetase [L 26.1 42 0.00091 34.0 1.9 51 54-117 573-623 (626)
344 PF12687 DUF3801: Protein of u 25.6 1.6E+02 0.0034 25.3 5.1 56 67-124 38-96 (204)
345 PF12091 DUF3567: Protein of u 25.5 51 0.0011 24.0 1.8 14 9-22 7-20 (85)
346 PRK00293 dipZ thiol:disulfide 25.5 93 0.002 31.3 4.2 31 12-43 452-482 (571)
347 PRK08178 acetolactate synthase 25.4 2.4E+02 0.0051 21.2 5.3 63 56-122 10-73 (96)
348 TIGR03221 muco_delta muconolac 25.4 2.8E+02 0.0062 20.5 8.9 64 63-132 9-82 (90)
349 COG0225 MsrA Peptide methionin 25.3 1.3E+02 0.0028 25.2 4.3 77 55-135 56-137 (174)
350 PF03108 DBD_Tnp_Mut: MuDR fam 25.3 78 0.0017 21.5 2.7 30 15-44 8-37 (67)
351 PRK05738 rplW 50S ribosomal pr 25.2 87 0.0019 23.2 3.0 32 59-90 22-55 (92)
352 TIGR01196 edd 6-phosphoglucona 25.0 2.3E+02 0.0051 28.6 6.7 100 15-131 448-555 (601)
353 TIGR00405 L26e_arch ribosomal 25.0 1E+02 0.0022 24.6 3.7 26 96-121 36-61 (145)
354 TIGR01873 cas_CT1978 CRISPR-as 24.7 61 0.0013 23.8 2.1 49 56-107 25-74 (87)
355 PRK09630 DNA topoisomerase IV 24.7 1.7E+02 0.0037 28.5 5.6 60 56-118 220-282 (479)
356 PF04127 DFP: DNA / pantothena 24.4 1.8E+02 0.0039 24.5 5.2 59 58-118 20-79 (185)
357 PRK04021 hypothetical protein; 24.3 3E+02 0.0065 20.4 7.5 57 55-115 32-90 (92)
358 PRK11152 ilvM acetolactate syn 24.3 2.2E+02 0.0047 20.3 4.8 60 58-121 7-67 (76)
359 PF13037 DUF3898: Domain of un 24.3 57 0.0012 23.9 1.8 51 69-119 32-90 (91)
360 PTZ00338 dimethyladenosine tra 24.2 1.8E+02 0.004 26.4 5.6 22 58-79 103-124 (294)
361 PRK14429 acylphosphatase; Prov 24.1 2E+02 0.0044 21.0 4.8 10 69-78 49-58 (90)
362 smart00703 NRF N-terminal doma 24.0 2.6E+02 0.0056 21.1 5.6 72 9-80 15-94 (110)
363 PF13721 SecD-TM1: SecD export 24.0 3.1E+02 0.0068 20.5 6.9 43 71-121 49-92 (101)
364 PRK09631 DNA topoisomerase IV 24.0 2E+02 0.0043 29.3 6.2 60 56-118 220-282 (635)
365 COG5337 CotH Spore coat assemb 23.9 97 0.0021 29.0 3.6 49 65-114 149-198 (473)
366 COG5175 MOT2 Transcriptional r 23.7 92 0.002 28.9 3.4 63 13-75 168-239 (480)
367 KOG2854 Possible pfkB family c 23.5 85 0.0018 29.1 3.2 18 100-117 214-231 (343)
368 PF10281 Ish1: Putative stress 23.4 71 0.0015 19.2 1.9 17 67-83 3-19 (38)
369 PRK09054 phosphogluconate dehy 23.4 2.7E+02 0.0058 28.2 6.8 105 10-132 445-557 (603)
370 smart00738 NGN In Spt5p, this 23.4 2.1E+02 0.0046 21.0 5.0 22 99-120 60-81 (106)
371 TIGR03047 PS_II_psb28 photosys 23.2 1.1E+02 0.0023 23.5 3.1 31 83-115 12-42 (109)
372 TIGR01033 DNA-binding regulato 23.1 2.3E+02 0.005 25.0 5.8 44 56-106 94-143 (238)
373 KOG3655 Drebrins and related a 23.1 1.3E+02 0.0028 29.3 4.4 27 1-28 70-98 (484)
374 COG5594 Uncharacterized integr 23.0 44 0.00096 34.6 1.4 30 52-81 204-234 (827)
375 cd04882 ACT_Bt0572_2 C-termina 22.9 2.2E+02 0.0048 18.4 6.2 45 71-117 14-59 (65)
376 PRK00110 hypothetical protein; 22.7 1.9E+02 0.004 25.7 5.1 55 56-117 94-157 (245)
377 PRK15321 putative type III sec 22.7 25 0.00054 26.2 -0.3 49 61-117 26-75 (120)
378 PF14401 RLAN: RimK-like ATPgr 22.6 1.8E+02 0.0039 23.8 4.7 60 55-114 86-146 (153)
379 TIGR00452 methyltransferase, p 22.6 1.6E+02 0.0035 27.1 4.9 15 68-82 252-266 (314)
380 cd03703 aeIF5B_II aeIF5B_II: T 22.3 2.2E+02 0.0048 21.9 4.8 50 68-118 53-108 (110)
381 COG5507 Uncharacterized conser 22.3 85 0.0019 23.6 2.4 21 98-118 66-86 (117)
382 PLN02707 Soluble inorganic pyr 22.2 57 0.0012 29.3 1.8 42 70-120 207-249 (267)
383 PF00276 Ribosomal_L23: Riboso 22.0 1.1E+02 0.0024 22.5 3.0 55 59-113 22-88 (91)
384 COG4009 Uncharacterized protei 22.0 82 0.0018 22.7 2.2 16 104-119 58-73 (88)
385 PRK14448 acylphosphatase; Prov 21.9 2.5E+02 0.0055 20.5 5.0 10 69-78 49-58 (90)
386 TIGR00119 acolac_sm acetolacta 21.9 3.4E+02 0.0074 22.2 6.2 51 70-121 15-66 (157)
387 PHA03008 hypothetical protein; 21.9 2E+02 0.0043 24.7 4.8 38 53-90 18-55 (234)
388 PRK13017 dihydroxy-acid dehydr 21.7 3.8E+02 0.0083 27.1 7.5 109 8-132 420-536 (596)
389 KOG2135 Proteins containing th 21.7 43 0.00093 32.4 1.0 51 66-123 207-257 (526)
390 PRK09756 PTS system N-acetylga 21.7 4.4E+02 0.0095 21.5 6.9 17 12-28 81-97 (158)
391 COG0318 CaiC Acyl-CoA syntheta 21.4 4.2E+02 0.009 26.0 8.0 52 66-117 432-491 (534)
392 PF00564 PB1: PB1 domain; Int 21.4 2.9E+02 0.0063 19.2 5.3 53 62-120 16-71 (84)
393 KOG4000 Uncharacterized conser 21.4 3.9E+02 0.0085 23.6 6.6 23 6-28 27-51 (291)
394 COG1691 NCAIR mutase (PurE)-re 21.3 94 0.002 27.3 2.9 24 71-94 22-46 (254)
395 cd00127 DSPc Dual specificity 21.3 1.9E+02 0.0041 22.2 4.6 20 56-75 6-25 (139)
396 PF01696 Adeno_E1B_55K: Adenov 21.3 1.9E+02 0.0041 27.5 5.1 52 64-124 17-70 (386)
397 PLN02373 soluble inorganic pyr 21.2 2.8E+02 0.006 23.6 5.6 37 70-118 138-174 (188)
398 cd02983 P5_C P5 family, C-term 21.2 3.6E+02 0.0077 21.1 6.1 10 10-19 20-29 (130)
399 PF05036 SPOR: Sporulation rel 21.1 22 0.00047 24.4 -0.9 17 103-119 49-65 (76)
400 KOG3062 RNA polymerase II elon 20.9 2.2E+02 0.0048 25.2 5.0 34 59-92 4-40 (281)
401 cd04879 ACT_3PGDH-like ACT_3PG 20.9 2.5E+02 0.0053 18.1 6.5 48 68-118 11-59 (71)
402 cd05992 PB1 The PB1 domain is 20.8 2.9E+02 0.0064 19.0 5.5 48 66-119 19-69 (81)
403 PRK07868 acyl-CoA synthetase; 20.8 5.8E+02 0.013 27.5 9.4 57 67-123 868-929 (994)
404 COG4098 comFA Superfamily II D 20.7 82 0.0018 29.6 2.5 27 17-43 216-242 (441)
405 COG5584 Predicted small secret 20.7 1.9E+02 0.0042 21.6 4.0 32 63-94 29-60 (103)
406 PRK06545 prephenate dehydrogen 20.6 3.6E+02 0.0078 25.1 7.0 63 55-120 289-353 (359)
407 PRK04405 prsA peptidylprolyl i 20.6 1.7E+02 0.0037 26.7 4.6 39 67-119 128-166 (298)
408 COG0002 ArgC Acetylglutamate s 20.6 2.3E+02 0.0049 26.6 5.4 27 64-90 253-280 (349)
409 KOG3432 Vacuolar H+-ATPase V1 20.5 91 0.002 23.9 2.3 24 65-88 42-65 (121)
410 PF11230 DUF3029: Protein of u 20.5 65 0.0014 31.1 1.9 58 9-80 61-125 (487)
411 PF12007 DUF3501: Protein of u 20.4 1.2E+02 0.0026 25.9 3.3 46 69-121 65-110 (192)
412 PF05929 Phage_GPO: Phage caps 20.4 94 0.002 28.1 2.8 91 32-134 12-109 (276)
413 TIGR01638 Atha_cystat_rel Arab 20.3 1.5E+02 0.0033 22.0 3.4 30 82-111 33-62 (92)
414 TIGR03432 yjhG_yagF probable d 20.3 3.6E+02 0.0079 27.5 7.1 82 9-108 463-545 (640)
415 PRK01688 histidinol-phosphate 20.2 1.9E+02 0.0042 26.6 5.0 52 55-116 145-200 (351)
416 PF10469 AKAP7_NLS: AKAP7 2'5' 20.2 4.8E+02 0.01 22.0 7.2 29 53-82 96-131 (209)
No 1
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.96 E-value=7.6e-28 Score=222.26 Aligned_cols=135 Identities=23% Similarity=0.524 Sum_probs=120.4
Q ss_pred CCCCCCCCcccEEEEEECCHHHHHHHHH--ccCccCCcEEEEeecCCCCCCCCCCCCcceEEEcCCCCCCCHHHHHHHHh
Q 021295 1 MKDRKTGQPRGFGFVTYADPSVVDKVIE--DTHIINGKQVEIKRTIPKGAVGSKDFKTKKIFVGGIPSSVNEDEFKDFFM 78 (314)
Q Consensus 1 m~d~~tg~~kG~aFV~f~~~~~a~~A~~--~~~~i~g~~i~v~~~~~~~~~~~~~~~~~~l~V~nLp~~~~e~~l~~~F~ 78 (314)
|+|+.|+++||||||+|+++++|++||+ +..+|.+++|+|.++.+.. +....++|||.|||++++|++|+++|+
T Consensus 140 ~~d~~tg~srGyaFVeF~~~e~A~~Ai~~LnG~~l~gr~i~V~~a~p~~----~~~~~~~lfV~nLp~~vtee~L~~~F~ 215 (346)
T TIGR01659 140 MRDYKTGYSFGYAFVDFGSEADSQRAIKNLNGITVRNKRLKVSYARPGG----ESIKDTNLYVTNLPRTITDDQLDTIFG 215 (346)
T ss_pred EecCCCCccCcEEEEEEccHHHHHHHHHHcCCCccCCceeeeecccccc----cccccceeEEeCCCCcccHHHHHHHHH
Confidence 4788999999999999999999999998 4458889999998876542 233467899999999999999999999
Q ss_pred ccCCeEEEEEeecCCCCCcceEEEEEeCChHHHHHHHHhcCCeeeCC--eEEEEeecCCCCCC
Q 021295 79 QFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAG--AQVEVKKAEPKKPN 139 (314)
Q Consensus 79 ~~G~v~~v~i~~~~~~g~~rG~afV~F~~~~~a~~a~~~l~~~~~~g--r~l~V~~a~~~~~~ 139 (314)
+|++|++|+|++|+.++++|+||||+|+++++|++||++||+++|.+ ++|+|++|+.....
T Consensus 216 ~fG~V~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~~~g~~~~l~V~~a~~~~~~ 278 (346)
T TIGR01659 216 KYGQIVQKNILRDKLTGTPRGVAFVRFNKREEAQEAISALNNVIPEGGSQPLTVRLAEEHGKA 278 (346)
T ss_pred hcCCEEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCccCCCceeEEEEECCccccc
Confidence 99999999999999999999999999999999999999999998876 78999998876443
No 2
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.92 E-value=3.7e-24 Score=208.04 Aligned_cols=139 Identities=24% Similarity=0.482 Sum_probs=121.4
Q ss_pred CCCCCCCCcccEEEEEECCHHHHHHHHH--ccCccCCcEEEEeecCCCCCC-------CCCCCCcceEEEcCCCCCCCHH
Q 021295 1 MKDRKTGQPRGFGFVTYADPSVVDKVIE--DTHIINGKQVEIKRTIPKGAV-------GSKDFKTKKIFVGGIPSSVNED 71 (314)
Q Consensus 1 m~d~~tg~~kG~aFV~f~~~~~a~~A~~--~~~~i~g~~i~v~~~~~~~~~-------~~~~~~~~~l~V~nLp~~~~e~ 71 (314)
|+|+.|+++||||||+|+++++|++||+ +...|.++.|+|.+....... .......++|||+|||++++++
T Consensus 140 ~~D~~TgkskGfAFVeF~s~e~A~~Ai~~lnG~~i~GR~IkV~rp~~~p~a~~~~~~~~~~~~~~~rLfVgnLp~~vtee 219 (612)
T TIGR01645 140 SWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRPSNMPQAQPIIDMVQEEAKKFNRIYVASVHPDLSET 219 (612)
T ss_pred eecCCCCCcCCeEEEEeCcHHHHHHHHHhcCCeEEecceeeecccccccccccccccccccccccceEEeecCCCCCCHH
Confidence 5788999999999999999999999998 455889999999865433211 1122345799999999999999
Q ss_pred HHHHHHhccCCeEEEEEeecCCCCCcceEEEEEeCChHHHHHHHHhcCCeeeCCeEEEEeecCCCCCC
Q 021295 72 EFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVKKAEPKKPN 139 (314)
Q Consensus 72 ~l~~~F~~~G~v~~v~i~~~~~~g~~rG~afV~F~~~~~a~~a~~~l~~~~~~gr~l~V~~a~~~~~~ 139 (314)
+|+++|++||+|++|+|++|+.++++||||||+|++.++|++||+.||.++|.++.|+|.++......
T Consensus 220 dLk~lFs~FG~I~svrl~~D~~tgksKGfGFVeFe~~e~A~kAI~amNg~elgGr~LrV~kAi~pP~~ 287 (612)
T TIGR01645 220 DIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASMNLFDLGGQYLRVGKCVTPPDA 287 (612)
T ss_pred HHHHHHhhcCCeeEEEEEecCCCCCcCCeEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEecCCCccc
Confidence 99999999999999999999999999999999999999999999999999999999999998865443
No 3
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.91 E-value=5.3e-24 Score=182.33 Aligned_cols=133 Identities=23% Similarity=0.503 Sum_probs=119.7
Q ss_pred CCCCCCCCcccEEEEEECCHHHHHHHHHcc--CccCCcEEEEeecCCCCCCC------------CCCCCcceEEEcCCCC
Q 021295 1 MKDRKTGQPRGFGFVTYADPSVVDKVIEDT--HIINGKQVEIKRTIPKGAVG------------SKDFKTKKIFVGGIPS 66 (314)
Q Consensus 1 m~d~~tg~~kG~aFV~f~~~~~a~~A~~~~--~~i~g~~i~v~~~~~~~~~~------------~~~~~~~~l~V~nLp~ 66 (314)
|||.+|.+||||+||.|.+.++|+.||..+ .-|..|.|+..|++.|.... ....+.++|||+||+.
T Consensus 95 irD~~T~KsKGYgFVSf~~k~dAEnAI~~MnGqWlG~R~IRTNWATRKp~e~n~~~ltfdeV~NQssp~NtsVY~G~I~~ 174 (321)
T KOG0148|consen 95 IRDMNTGKSKGYGFVSFPNKEDAENAIQQMNGQWLGRRTIRTNWATRKPSEMNGKPLTFDEVYNQSSPDNTSVYVGNIAS 174 (321)
T ss_pred eecccCCcccceeEEeccchHHHHHHHHHhCCeeeccceeeccccccCccccCCCCccHHHHhccCCCCCceEEeCCcCc
Confidence 789999999999999999999999999954 47889999999988775322 1456788999999999
Q ss_pred CCCHHHHHHHHhccCCeEEEEEeecCCCCCcceEEEEEeCChHHHHHHHHhcCCeeeCCeEEEEeecCCCCCC
Q 021295 67 SVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVKKAEPKKPN 139 (314)
Q Consensus 67 ~~~e~~l~~~F~~~G~v~~v~i~~~~~~g~~rG~afV~F~~~~~a~~a~~~l~~~~~~gr~l~V~~a~~~~~~ 139 (314)
.++|++|+++|+.||+|.+|+|.++ ++||||.|++.|+|.+||..+|+.+|.++.|++.|-+.....
T Consensus 175 ~lte~~mr~~Fs~fG~I~EVRvFk~------qGYaFVrF~tkEaAahAIv~mNntei~G~~VkCsWGKe~~~~ 241 (321)
T KOG0148|consen 175 GLTEDLMRQTFSPFGPIQEVRVFKD------QGYAFVRFETKEAAAHAIVQMNNTEIGGQLVRCSWGKEGDDG 241 (321)
T ss_pred cccHHHHHHhcccCCcceEEEEecc------cceEEEEecchhhHHHHHHHhcCceeCceEEEEeccccCCCC
Confidence 9999999999999999999999987 689999999999999999999999999999999998876543
No 4
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.90 E-value=7.9e-23 Score=197.43 Aligned_cols=137 Identities=28% Similarity=0.523 Sum_probs=120.2
Q ss_pred CCCCCCCCcccEEEEEECCHHHHHHHHH-ccCccCCcEEEEeecCCCCCCC--------CCCCCcceEEEcCCCCCCCHH
Q 021295 1 MKDRKTGQPRGFGFVTYADPSVVDKVIE-DTHIINGKQVEIKRTIPKGAVG--------SKDFKTKKIFVGGIPSSVNED 71 (314)
Q Consensus 1 m~d~~tg~~kG~aFV~f~~~~~a~~A~~-~~~~i~g~~i~v~~~~~~~~~~--------~~~~~~~~l~V~nLp~~~~e~ 71 (314)
|+|+.|+++||||||+|.+.++|++||+ +...+.++.|.|+.+....... ......++|||.|||.+++|+
T Consensus 122 ~~d~~~~~skg~afVeF~~~e~A~~Al~l~g~~~~g~~i~v~~~~~~~~~~~~~~~~~~~~~p~~~~l~v~nl~~~~te~ 201 (457)
T TIGR01622 122 IKDRNSRRSKGVAYVEFYDVESVIKALALTGQMLLGRPIIVQSSQAEKNRAAKAATHQPGDIPNFLKLYVGNLHFNITEQ 201 (457)
T ss_pred eecCCCCCcceEEEEEECCHHHHHHHHHhCCCEECCeeeEEeecchhhhhhhhcccccCCCCCCCCEEEEcCCCCCCCHH
Confidence 5788999999999999999999999998 5568889999988754332111 112336899999999999999
Q ss_pred HHHHHHhccCCeEEEEEeecCCCCCcceEEEEEeCChHHHHHHHHhcCCeeeCCeEEEEeecCCCC
Q 021295 72 EFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVKKAEPKK 137 (314)
Q Consensus 72 ~l~~~F~~~G~v~~v~i~~~~~~g~~rG~afV~F~~~~~a~~a~~~l~~~~~~gr~l~V~~a~~~~ 137 (314)
+|+++|++||+|+.|.|+.+..++++++||||+|.++++|++||+.||++.|.+++|+|.++....
T Consensus 202 ~l~~~f~~~G~i~~v~~~~d~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~i~g~~i~v~~a~~~~ 267 (457)
T TIGR01622 202 ELRQIFEPFGDIEDVQLHRDPETGRSKGFGFIQFHDAEEAKEALEVMNGFELAGRPIKVGYAQDST 267 (457)
T ss_pred HHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhcCCcEECCEEEEEEEccCCC
Confidence 999999999999999999999999999999999999999999999999999999999999988543
No 5
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.90 E-value=8.9e-23 Score=190.54 Aligned_cols=80 Identities=25% Similarity=0.407 Sum_probs=77.9
Q ss_pred eEEEcCCCCCCCHHHHHHHHhccCCeEEEEEeecCCCCCcceEEEEEeCChHHHHHHHHhcCCeeeCCeEEEEeecCCCC
Q 021295 58 KIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVKKAEPKK 137 (314)
Q Consensus 58 ~l~V~nLp~~~~e~~l~~~F~~~G~v~~v~i~~~~~~g~~rG~afV~F~~~~~a~~a~~~l~~~~~~gr~l~V~~a~~~~ 137 (314)
+|||.|||++++|++|+++|++||.|++|+|++|+.|+++||||||+|++.++|.+||+.||+..|.+++|+|.++..+.
T Consensus 271 ~lfV~NL~~~~~e~~L~~~F~~fG~v~~v~i~~d~~t~~skG~aFV~F~~~~~A~~Ai~~lnG~~~~gr~i~V~~~~~~~ 350 (352)
T TIGR01661 271 CIFVYNLSPDTDETVLWQLFGPFGAVQNVKIIRDLTTNQCKGYGFVSMTNYDEAAMAILSLNGYTLGNRVLQVSFKTNKA 350 (352)
T ss_pred EEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeEcCCCCCccceEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEccCCC
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999999998775
No 6
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.89 E-value=1.2e-21 Score=190.19 Aligned_cols=126 Identities=23% Similarity=0.416 Sum_probs=110.2
Q ss_pred CCCCcccEEEEEECCHHHHHHHHHcc----CccCCcEEEEeecCCCCCCCC-CCCCcceEEEcCCCCCCCHHHHHHHHhc
Q 021295 5 KTGQPRGFGFVTYADPSVVDKVIEDT----HIINGKQVEIKRTIPKGAVGS-KDFKTKKIFVGGIPSSVNEDEFKDFFMQ 79 (314)
Q Consensus 5 ~tg~~kG~aFV~f~~~~~a~~A~~~~----~~i~g~~i~v~~~~~~~~~~~-~~~~~~~l~V~nLp~~~~e~~l~~~F~~ 79 (314)
.+.++++||||+|++.++|++|++++ ..++++.|.|+++.++....+ ...+.++|||+|||++++|++|+++|++
T Consensus 177 ~kgKnRGFAFVeF~s~edAa~AirkL~~gki~l~Gr~I~VdwA~p~~~~d~~~~~~~k~LfVgNL~~~~tee~L~~~F~~ 256 (578)
T TIGR01648 177 DKKKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHVIAVDWAEPEEEVDEDVMAKVKILYVRNLMTTTTEEIIEKSFSE 256 (578)
T ss_pred ccCccCceEEEEcCCHHHHHHHHHHhhccceEecCceEEEEeecccccccccccccccEEEEeCCCCCCCHHHHHHHHHh
Confidence 45689999999999999999999743 257899999999887755443 2345689999999999999999999999
Q ss_pred c--CCeEEEEEeecCCCCCcceEEEEEeCChHHHHHHHHhcCCeeeCCeEEEEeecCCCCC
Q 021295 80 F--GDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVKKAEPKKP 138 (314)
Q Consensus 80 ~--G~v~~v~i~~~~~~g~~rG~afV~F~~~~~a~~a~~~l~~~~~~gr~l~V~~a~~~~~ 138 (314)
| |+|++|+++++ ||||+|+++++|++||+.||+.+|++++|+|++|++...
T Consensus 257 f~~G~I~rV~~~rg--------fAFVeF~s~e~A~kAi~~lnG~~i~Gr~I~V~~Akp~~~ 309 (578)
T TIGR01648 257 FKPGKVERVKKIRD--------YAFVHFEDREDAVKAMDELNGKELEGSEIEVTLAKPVDK 309 (578)
T ss_pred cCCCceEEEEeecC--------eEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEccCCCc
Confidence 9 99999988744 999999999999999999999999999999999987644
No 7
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.89 E-value=4e-22 Score=186.16 Aligned_cols=133 Identities=28% Similarity=0.569 Sum_probs=118.5
Q ss_pred CCCCCCCCcccEEEEEECCHHHHHHHHH--ccCccCCcEEEEeecCCCCCCCCCCCCcceEEEcCCCCCCCHHHHHHHHh
Q 021295 1 MKDRKTGQPRGFGFVTYADPSVVDKVIE--DTHIINGKQVEIKRTIPKGAVGSKDFKTKKIFVGGIPSSVNEDEFKDFFM 78 (314)
Q Consensus 1 m~d~~tg~~kG~aFV~f~~~~~a~~A~~--~~~~i~g~~i~v~~~~~~~~~~~~~~~~~~l~V~nLp~~~~e~~l~~~F~ 78 (314)
|+|+.|+++||||||+|.++++|++||+ +...|.++.|.|+++.++.. .....+|||.|||.+++|++|+++|+
T Consensus 36 ~~d~~~g~s~g~afV~f~~~~~A~~Ai~~l~g~~l~g~~i~v~~a~~~~~----~~~~~~l~v~~l~~~~~~~~l~~~f~ 111 (352)
T TIGR01661 36 VRDKVTGQSLGYGFVNYVRPEDAEKAVNSLNGLRLQNKTIKVSYARPSSD----SIKGANLYVSGLPKTMTQHELESIFS 111 (352)
T ss_pred EEcCCCCccceEEEEEECcHHHHHHHHhhcccEEECCeeEEEEeeccccc----ccccceEEECCccccCCHHHHHHHHh
Confidence 5788999999999999999999999998 44588999999998866432 33567899999999999999999999
Q ss_pred ccCCeEEEEEeecCCCCCcceEEEEEeCChHHHHHHHHhcCCeeeCC--eEEEEeecCCCC
Q 021295 79 QFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAG--AQVEVKKAEPKK 137 (314)
Q Consensus 79 ~~G~v~~v~i~~~~~~g~~rG~afV~F~~~~~a~~a~~~l~~~~~~g--r~l~V~~a~~~~ 137 (314)
+||+|+.+.|+.+..++.+++||||+|++.++|++||+.||+..+.+ ++|.|+++....
T Consensus 112 ~~G~i~~~~~~~~~~~~~~~g~~fv~f~~~~~A~~ai~~l~g~~~~g~~~~i~v~~a~~~~ 172 (352)
T TIGR01661 112 PFGQIITSRILSDNVTGLSKGVGFIRFDKRDEADRAIKTLNGTTPSGCTEPITVKFANNPS 172 (352)
T ss_pred ccCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCccCCCceeEEEEECCCCC
Confidence 99999999999998888999999999999999999999999998876 678888886554
No 8
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=99.88 E-value=7.9e-23 Score=185.02 Aligned_cols=137 Identities=27% Similarity=0.475 Sum_probs=114.0
Q ss_pred CCCCCCCCcccEEEEEECCHHHHHHHHHc---cCccCCcE--EEEeecCCCCCCCCCCCCcceEEEcCCCCCCCHHHHHH
Q 021295 1 MKDRKTGQPRGFGFVTYADPSVVDKVIED---THIINGKQ--VEIKRTIPKGAVGSKDFKTKKIFVGGIPSSVNEDEFKD 75 (314)
Q Consensus 1 m~d~~tg~~kG~aFV~f~~~~~a~~A~~~---~~~i~g~~--i~v~~~~~~~~~~~~~~~~~~l~V~nLp~~~~e~~l~~ 75 (314)
||||.|+.+||||||+|.+.++|.+|+.. ..++.+.. |.|+.+.... +....+++|||+-|+..++|+||++
T Consensus 67 ~kDk~t~~s~gcCFv~~~trk~a~~a~~Alhn~ktlpG~~~pvqvk~Ad~E~---er~~~e~KLFvg~lsK~~te~evr~ 143 (510)
T KOG0144|consen 67 IKDKSTGQSKGCCFVKYYTRKEADEAINALHNQKTLPGMHHPVQVKYADGER---ERIVEERKLFVGMLSKQCTENEVRE 143 (510)
T ss_pred ecccccCcccceEEEEeccHHHHHHHHHHhhcccccCCCCcceeecccchhh---hccccchhhhhhhccccccHHHHHH
Confidence 79999999999999999999999988874 34555544 4444443221 2225678999999999999999999
Q ss_pred HHhccCCeEEEEEeecCCCCCcceEEEEEeCChHHHHHHHHhcCCee-e--CCeEEEEeecCCCCCCCC
Q 021295 76 FFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLE-L--AGAQVEVKKAEPKKPNLP 141 (314)
Q Consensus 76 ~F~~~G~v~~v~i~~~~~~g~~rG~afV~F~~~~~a~~a~~~l~~~~-~--~gr~l~V~~a~~~~~~~~ 141 (314)
+|++||.|++|.|++| ..+.+||||||+|++.|.|..||+.||... + +..+|.|++|.+++++..
T Consensus 144 iFs~fG~Ied~~ilrd-~~~~sRGcaFV~fstke~A~~Aika~ng~~tmeGcs~PLVVkFADtqkdk~~ 211 (510)
T KOG0144|consen 144 IFSRFGHIEDCYILRD-PDGLSRGCAFVKFSTKEMAVAAIKALNGTQTMEGCSQPLVVKFADTQKDKDG 211 (510)
T ss_pred HHHhhCccchhhheec-ccccccceeEEEEehHHHHHHHHHhhccceeeccCCCceEEEecccCCCchH
Confidence 9999999999999999 578899999999999999999999998754 4 458899999999887543
No 9
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.87 E-value=1.2e-21 Score=191.55 Aligned_cols=134 Identities=19% Similarity=0.365 Sum_probs=113.5
Q ss_pred CCCCCcccEEEEEECCHHHHHHHHH-ccCccCCcEEEEeecCCCCCC-------------------------CCCCCCcc
Q 021295 4 RKTGQPRGFGFVTYADPSVVDKVIE-DTHIINGKQVEIKRTIPKGAV-------------------------GSKDFKTK 57 (314)
Q Consensus 4 ~~tg~~kG~aFV~f~~~~~a~~A~~-~~~~i~g~~i~v~~~~~~~~~-------------------------~~~~~~~~ 57 (314)
..+.++++||||+|.+.++|++||+ +...|.++.|.|.+....... .......+
T Consensus 217 ~~~~~~kg~afVeF~~~e~A~~Al~l~g~~~~g~~l~v~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (509)
T TIGR01642 217 VNINKEKNFAFLEFRTVEEATFAMALDSIIYSNVFLKIRRPHDYIPVPQITPEVSQKNPDDNAKNVEKLVNSTTVLDSKD 296 (509)
T ss_pred EEECCCCCEEEEEeCCHHHHhhhhcCCCeEeeCceeEecCccccCCccccCCCCCCCCCcccccccccccccccCCCCCC
Confidence 3456789999999999999999997 555788888888653321100 00123457
Q ss_pred eEEEcCCCCCCCHHHHHHHHhccCCeEEEEEeecCCCCCcceEEEEEeCChHHHHHHHHhcCCeeeCCeEEEEeecCCCC
Q 021295 58 KIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVKKAEPKK 137 (314)
Q Consensus 58 ~l~V~nLp~~~~e~~l~~~F~~~G~v~~v~i~~~~~~g~~rG~afV~F~~~~~a~~a~~~l~~~~~~gr~l~V~~a~~~~ 137 (314)
+|||+|||+.+++++|+++|++||.|+.|.|+++..+++++|||||+|+++++|++||+.||++.|.+++|.|++|....
T Consensus 297 ~l~v~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~A~~~l~g~~~~~~~l~v~~a~~~~ 376 (509)
T TIGR01642 297 RIYIGNLPLYLGEDQIKELLESFGDLKAFNLIKDIATGLSKGYAFCEYKDPSVTDVAIAALNGKDTGDNKLHVQRACVGA 376 (509)
T ss_pred EEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECccCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999986543
No 10
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=99.87 E-value=6.6e-22 Score=179.84 Aligned_cols=127 Identities=24% Similarity=0.410 Sum_probs=114.2
Q ss_pred CCCcccEEEEEECCHHHHHHHHHccC----ccCCcEEEEeecCCCCCCCC-CCCCcceEEEcCCCCCCCHHHHHHHHhcc
Q 021295 6 TGQPRGFGFVTYADPSVVDKVIEDTH----IINGKQVEIKRTIPKGAVGS-KDFKTKKIFVGGIPSSVNEDEFKDFFMQF 80 (314)
Q Consensus 6 tg~~kG~aFV~f~~~~~a~~A~~~~~----~i~g~~i~v~~~~~~~~~~~-~~~~~~~l~V~nLp~~~~e~~l~~~F~~~ 80 (314)
+.++||||||+|.+..+|..|.+++. .+++..+.|+|+.+...... ...+.+.|||.||+.++|||.|+++|++|
T Consensus 204 k~KNRGFaFveYe~H~~Aa~aRrKl~~g~~klwgn~~tVdWAep~~e~ded~ms~VKvLYVRNL~~~tTeE~lk~~F~~~ 283 (506)
T KOG0117|consen 204 KTKNRGFAFVEYESHRAAAMARRKLMPGKIKLWGNAITVDWAEPEEEPDEDTMSKVKVLYVRNLMESTTEETLKKLFNEF 283 (506)
T ss_pred cccccceEEEEeecchhHHHHHhhccCCceeecCCcceeeccCcccCCChhhhhheeeeeeeccchhhhHHHHHHHHHhc
Confidence 67999999999999999888877442 78899999999998866544 45678999999999999999999999999
Q ss_pred CCeEEEEEeecCCCCCcceEEEEEeCChHHHHHHHHhcCCeeeCCeEEEEeecCCCCCCC
Q 021295 81 GDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVKKAEPKKPNL 140 (314)
Q Consensus 81 G~v~~v~i~~~~~~g~~rG~afV~F~~~~~a~~a~~~l~~~~~~gr~l~V~~a~~~~~~~ 140 (314)
|+|++|+.++| ||||.|.+.++|.+|++.+|..+|++..|+|.+|++.....
T Consensus 284 G~veRVkk~rD--------YaFVHf~eR~davkAm~~~ngkeldG~~iEvtLAKP~~k~k 335 (506)
T KOG0117|consen 284 GKVERVKKPRD--------YAFVHFAEREDAVKAMKETNGKELDGSPIEVTLAKPVDKKK 335 (506)
T ss_pred cceEEeecccc--------eeEEeecchHHHHHHHHHhcCceecCceEEEEecCChhhhc
Confidence 99999999977 99999999999999999999999999999999999876543
No 11
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.86 E-value=5e-21 Score=189.44 Aligned_cols=133 Identities=25% Similarity=0.487 Sum_probs=115.8
Q ss_pred CCCCCCCCcccEEEEEECCHHHHHHHHH--ccCccCCcEEEEeecCCCCCCCCCCCCcceEEEcCCCCCCCHHHHHHHHh
Q 021295 1 MKDRKTGQPRGFGFVTYADPSVVDKVIE--DTHIINGKQVEIKRTIPKGAVGSKDFKTKKIFVGGIPSSVNEDEFKDFFM 78 (314)
Q Consensus 1 m~d~~tg~~kG~aFV~f~~~~~a~~A~~--~~~~i~g~~i~v~~~~~~~~~~~~~~~~~~l~V~nLp~~~~e~~l~~~F~ 78 (314)
++|+.|++++|||||+|.+.++|++|++ +...|.++.|+|.|+..... .......+|||.|||.++++++|+++|+
T Consensus 33 ~~d~~t~~s~G~afV~F~~~~~A~~Al~~ln~~~i~gk~i~i~~s~~~~~--~~~~~~~~vfV~nLp~~~~~~~L~~~F~ 110 (562)
T TIGR01628 33 CRDSVTRRSLGYGYVNFQNPADAERALETMNFKRLGGKPIRIMWSQRDPS--LRRSGVGNIFVKNLDKSVDNKALFDTFS 110 (562)
T ss_pred EecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeeEEeeccccccc--ccccCCCceEEcCCCccCCHHHHHHHHH
Confidence 4788899999999999999999999998 44568999999988754322 2223456899999999999999999999
Q ss_pred ccCCeEEEEEeecCCCCCcceEEEEEeCChHHHHHHHHhcCCeeeCCeEEEEeecCCC
Q 021295 79 QFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVKKAEPK 136 (314)
Q Consensus 79 ~~G~v~~v~i~~~~~~g~~rG~afV~F~~~~~a~~a~~~l~~~~~~gr~l~V~~a~~~ 136 (314)
+||+|+.|+|+.+ .++++++||||+|+++++|++||++||+..+.++.|.|.....+
T Consensus 111 ~~G~i~~~~i~~~-~~g~skg~afV~F~~~e~A~~Ai~~lng~~~~~~~i~v~~~~~~ 167 (562)
T TIGR01628 111 KFGNILSCKVATD-ENGKSRGYGFVHFEKEESAKAAIQKVNGMLLNDKEVYVGRFIKK 167 (562)
T ss_pred hcCCcceeEeeec-CCCCcccEEEEEECCHHHHHHHHHHhcccEecCceEEEeccccc
Confidence 9999999999988 47789999999999999999999999999999999998765443
No 12
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=99.86 E-value=6.7e-21 Score=173.30 Aligned_cols=129 Identities=24% Similarity=0.462 Sum_probs=110.7
Q ss_pred CCCCCCCCcccEEEEEECCHHHHHHHHHcc--Ccc-CCcEEEEeecCCCCCCCCCCCCcceEEEcCCCCCCCHHHHHHHH
Q 021295 1 MKDRKTGQPRGFGFVTYADPSVVDKVIEDT--HII-NGKQVEIKRTIPKGAVGSKDFKTKKIFVGGIPSSVNEDEFKDFF 77 (314)
Q Consensus 1 m~d~~tg~~kG~aFV~f~~~~~a~~A~~~~--~~i-~g~~i~v~~~~~~~~~~~~~~~~~~l~V~nLp~~~~e~~l~~~F 77 (314)
|+|+-++.+||||||+|++.++|++|++.+ ++| .+|.|.|..++ ..++|||+|||.+.+++||++.|
T Consensus 116 MmD~~sG~nRGYAFVtf~~Ke~Aq~Aik~lnn~Eir~GK~igvc~Sv----------an~RLFiG~IPK~k~keeIlee~ 185 (506)
T KOG0117|consen 116 MMDPFSGDNRGYAFVTFCTKEEAQEAIKELNNYEIRPGKLLGVCVSV----------ANCRLFIGNIPKTKKKEEILEEM 185 (506)
T ss_pred eecccCCCCcceEEEEeecHHHHHHHHHHhhCccccCCCEeEEEEee----------ecceeEeccCCccccHHHHHHHH
Confidence 789999999999999999999999999943 444 68888888765 35899999999999999999999
Q ss_pred hccCC-eEEEEEeecC-CCCCcceEEEEEeCChHHHHHHHHhc--CCeeeCCeEEEEeecCCCCCC
Q 021295 78 MQFGD-VQEHQIMRDH-STSRSRGFGFITFDTEQAVDDLLAKG--NKLELAGAQVEVKKAEPKKPN 139 (314)
Q Consensus 78 ~~~G~-v~~v~i~~~~-~~g~~rG~afV~F~~~~~a~~a~~~l--~~~~~~gr~l~V~~a~~~~~~ 139 (314)
++.++ |++|.|..+. ++.++||||||+|+++.+|..|..+| ..+.++++.|.|+||.++...
T Consensus 186 ~kVteGVvdVivy~~p~dk~KNRGFaFveYe~H~~Aa~aRrKl~~g~~klwgn~~tVdWAep~~e~ 251 (506)
T KOG0117|consen 186 KKVTEGVVDVIVYPSPDDKTKNRGFAFVEYESHRAAAMARRKLMPGKIKLWGNAITVDWAEPEEEP 251 (506)
T ss_pred HhhCCCeeEEEEecCccccccccceEEEEeecchhHHHHHhhccCCceeecCCcceeeccCcccCC
Confidence 99976 6677666553 35678999999999999999999876 557799999999999998653
No 13
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.85 E-value=2.5e-20 Score=151.81 Aligned_cols=85 Identities=32% Similarity=0.661 Sum_probs=80.4
Q ss_pred CCCcceEEEcCCCCCCCHHHHHHHHhccCCeEEEEEeecCCCCCcceEEEEEeCChHHHHHHHHhcCCeeeCCeEEEEee
Q 021295 53 DFKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVKK 132 (314)
Q Consensus 53 ~~~~~~l~V~nLp~~~~e~~l~~~F~~~G~v~~v~i~~~~~~g~~rG~afV~F~~~~~a~~a~~~l~~~~~~gr~l~V~~ 132 (314)
...+++|||.|||++++|++|+++|++||+|++|+|+.|+.|+++++||||+|+++++|++||+.||+++|++++|+|++
T Consensus 31 ~~~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~lng~~i~Gr~l~V~~ 110 (144)
T PLN03134 31 RLMSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRVNP 110 (144)
T ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEe
Confidence 34567999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCC
Q 021295 133 AEPKK 137 (314)
Q Consensus 133 a~~~~ 137 (314)
+.++.
T Consensus 111 a~~~~ 115 (144)
T PLN03134 111 ANDRP 115 (144)
T ss_pred CCcCC
Confidence 88654
No 14
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.85 E-value=7e-21 Score=188.40 Aligned_cols=133 Identities=23% Similarity=0.477 Sum_probs=115.8
Q ss_pred CCCCcccEEEEEECCHHHHHHHHH--ccCccC----CcEEEEeecCCCCCCC--------------CCCCCcceEEEcCC
Q 021295 5 KTGQPRGFGFVTYADPSVVDKVIE--DTHIIN----GKQVEIKRTIPKGAVG--------------SKDFKTKKIFVGGI 64 (314)
Q Consensus 5 ~tg~~kG~aFV~f~~~~~a~~A~~--~~~~i~----g~~i~v~~~~~~~~~~--------------~~~~~~~~l~V~nL 64 (314)
.++++||||||+|++.++|++|++ +...|. ++.+.|.++..+.... .......+|||.||
T Consensus 214 ~~g~~~G~afV~F~~~e~A~~Av~~l~g~~i~~~~~g~~l~v~~a~~k~er~~~~~~~~~~~~~~~~~~~~~~~l~V~nl 293 (562)
T TIGR01628 214 GSGRSRGFAFVNFEKHEDAAKAVEEMNGKKIGLAKEGKKLYVGRAQKRAEREAELRRKFEELQQERKMKAQGVNLYVKNL 293 (562)
T ss_pred CCCCcccEEEEEECCHHHHHHHHHHhCCcEecccccceeeEeecccChhhhHHHHHhhHHhhhhhhhcccCCCEEEEeCC
Confidence 578999999999999999999998 444666 7888887765543221 12345678999999
Q ss_pred CCCCCHHHHHHHHhccCCeEEEEEeecCCCCCcceEEEEEeCChHHHHHHHHhcCCeeeCCeEEEEeecCCCCC
Q 021295 65 PSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVKKAEPKKP 138 (314)
Q Consensus 65 p~~~~e~~l~~~F~~~G~v~~v~i~~~~~~g~~rG~afV~F~~~~~a~~a~~~l~~~~~~gr~l~V~~a~~~~~ 138 (314)
++++++++|+++|++||+|++|+|+.| .++++++||||+|+++++|++||+.||+..|.+++|.|.+|..+..
T Consensus 294 ~~~~~~~~L~~~F~~~G~i~~~~i~~d-~~g~~~g~gfV~f~~~~~A~~A~~~~~g~~~~gk~l~V~~a~~k~~ 366 (562)
T TIGR01628 294 DDTVTDEKLRELFSECGEITSAKVMLD-EKGVSRGFGFVCFSNPEEANRAVTEMHGRMLGGKPLYVALAQRKEQ 366 (562)
T ss_pred CCccCHHHHHHHHHhcCCeEEEEEEEC-CCCCcCCeEEEEeCCHHHHHHHHHHhcCCeeCCceeEEEeccCcHH
Confidence 999999999999999999999999999 6899999999999999999999999999999999999999988754
No 15
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=99.85 E-value=1.5e-21 Score=175.80 Aligned_cols=142 Identities=46% Similarity=0.823 Sum_probs=131.1
Q ss_pred CCCCCCCCcccEEEEEECCHHHHHHHHH-ccCccCCcEEEEeecCCCCCCCC--CCCCcceEEEcCCCCCCCHHHHHHHH
Q 021295 1 MKDRKTGQPRGFGFVTYADPSVVDKVIE-DTHIINGKQVEIKRTIPKGAVGS--KDFKTKKIFVGGIPSSVNEDEFKDFF 77 (314)
Q Consensus 1 m~d~~tg~~kG~aFV~f~~~~~a~~A~~-~~~~i~g~~i~v~~~~~~~~~~~--~~~~~~~l~V~nLp~~~~e~~l~~~F 77 (314)
|+|+.|+++|+|.||+|++++.+.++|. ..|+|+++.|+++.+++++.... ....+++|||+.||.+++|++|++.|
T Consensus 39 m~d~~t~rsrgFgfv~f~~~~~v~~vl~~~~h~~dgr~ve~k~av~r~~~~~~~~~~~tkkiFvGG~~~~~~e~~~r~yf 118 (311)
T KOG4205|consen 39 MRDPSTGRSRGFGFVTFATPEGVDAVLNARTHKLDGRSVEPKRAVSREDQTKVGRHLRTKKIFVGGLPPDTTEEDFKDYF 118 (311)
T ss_pred eccCCCCCcccccceecCCCcchheeecccccccCCccccceeccCcccccccccccceeEEEecCcCCCCchHHHhhhh
Confidence 7899999999999999999999999998 67889999999999999987665 34468999999999999999999999
Q ss_pred hccCCeEEEEEeecCCCCCcceEEEEEeCChHHHHHHHHhcCCeeeCCeEEEEeecCCCCCCCCCC
Q 021295 78 MQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVKKAEPKKPNLPQP 143 (314)
Q Consensus 78 ~~~G~v~~v~i~~~~~~g~~rG~afV~F~~~~~a~~a~~~l~~~~~~gr~l~V~~a~~~~~~~~~~ 143 (314)
++|+.|.++.|+.|..+.++++|+||+|++++++++++.. +-++|+++.|+|+.|.++....+..
T Consensus 119 e~~g~v~~~~~~~d~~~~~~rgFgfv~~~~e~sVdkv~~~-~f~~~~gk~vevkrA~pk~~~~~~~ 183 (311)
T KOG4205|consen 119 EQFGKVADVVIMYDKTTSRPRGFGFVTFDSEDSVDKVTLQ-KFHDFNGKKVEVKRAIPKEVMQSTK 183 (311)
T ss_pred hccceeEeeEEeecccccccccceeeEeccccccceeccc-ceeeecCceeeEeeccchhhccccc
Confidence 9999999999999999999999999999999999999987 7889999999999999998776543
No 16
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=99.82 E-value=4.7e-20 Score=157.34 Aligned_cols=133 Identities=29% Similarity=0.567 Sum_probs=119.1
Q ss_pred CCCCCCCCcccEEEEEECCHHHHHHHHHcc--CccCCcEEEEeecCCCCCCCCCCCCcceEEEcCCCCCCCHHHHHHHHh
Q 021295 1 MKDRKTGQPRGFGFVTYADPSVVDKVIEDT--HIINGKQVEIKRTIPKGAVGSKDFKTKKIFVGGIPSSVNEDEFKDFFM 78 (314)
Q Consensus 1 m~d~~tg~~kG~aFV~f~~~~~a~~A~~~~--~~i~g~~i~v~~~~~~~~~~~~~~~~~~l~V~nLp~~~~e~~l~~~F~ 78 (314)
|+||.|+.|-||+||-|.+++||++|+... ..+..|+|+|..+.|. ++.++...|||..||..+|..||+++|+
T Consensus 74 vRDKitGqSLGYGFVNYv~p~DAe~AintlNGLrLQ~KTIKVSyARPS----s~~Ik~aNLYvSGlPktMtqkelE~iFs 149 (360)
T KOG0145|consen 74 VRDKITGQSLGYGFVNYVRPKDAEKAINTLNGLRLQNKTIKVSYARPS----SDSIKDANLYVSGLPKTMTQKELEQIFS 149 (360)
T ss_pred eeccccccccccceeeecChHHHHHHHhhhcceeeccceEEEEeccCC----hhhhcccceEEecCCccchHHHHHHHHH
Confidence 689999999999999999999999999943 4677888888887765 3456677899999999999999999999
Q ss_pred ccCCeEEEEEeecCCCCCcceEEEEEeCChHHHHHHHHhcCCeeeCC--eEEEEeecCCCC
Q 021295 79 QFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAG--AQVEVKKAEPKK 137 (314)
Q Consensus 79 ~~G~v~~v~i~~~~~~g~~rG~afV~F~~~~~a~~a~~~l~~~~~~g--r~l~V~~a~~~~ 137 (314)
+||.|...+|+.|..|+.+||.+||.|+..++|++||+.||+..-.+ .+|.|++|....
T Consensus 150 ~fGrIItSRiL~dqvtg~srGVgFiRFDKr~EAe~AIk~lNG~~P~g~tepItVKFannPs 210 (360)
T KOG0145|consen 150 PFGRIITSRILVDQVTGLSRGVGFIRFDKRIEAEEAIKGLNGQKPSGCTEPITVKFANNPS 210 (360)
T ss_pred HhhhhhhhhhhhhcccceecceeEEEecchhHHHHHHHhccCCCCCCCCCCeEEEecCCcc
Confidence 99999999999999999999999999999999999999999987655 679999987653
No 17
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=99.82 E-value=1.2e-19 Score=168.59 Aligned_cols=138 Identities=22% Similarity=0.429 Sum_probs=119.0
Q ss_pred CCCCCCCCcccEEEEEECCHHHHHHHHH--ccCccCCcEEEEeecCCCCCCCC--------------------C--CCCc
Q 021295 1 MKDRKTGQPRGFGFVTYADPSVVDKVIE--DTHIINGKQVEIKRTIPKGAVGS--------------------K--DFKT 56 (314)
Q Consensus 1 m~d~~tg~~kG~aFV~f~~~~~a~~A~~--~~~~i~g~~i~v~~~~~~~~~~~--------------------~--~~~~ 56 (314)
++++.+.++|||+||+|+-+++++.|++ ....+.++.|.|+.+..+..... . +.+.
T Consensus 38 Vt~~gs~~~RGfgfVtFam~ED~qrA~~e~~~~kf~Gr~l~v~~A~~R~r~e~~~~~e~~~veK~~~q~~~~k~~v~~~k 117 (678)
T KOG0127|consen 38 VTNKGSSEKRGFGFVTFAMEEDVQRALAETEQSKFEGRILNVDPAKKRARSEEVEKGENKAVEKPIEQKRPTKAKVDLPK 117 (678)
T ss_pred ecCCCcccccCccceeeehHhHHHHHHHHhhcCcccceecccccccccccchhcccccchhhhcccccCCcchhhccCcc
Confidence 4688899999999999999999999998 44469999999987665533221 1 2235
Q ss_pred ceEEEcCCCCCCCHHHHHHHHhccCCeEEEEEeecCCCCCcceEEEEEeCChHHHHHHHHhcCCeeeCCeEEEEeecCCC
Q 021295 57 KKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVKKAEPK 136 (314)
Q Consensus 57 ~~l~V~nLp~~~~e~~l~~~F~~~G~v~~v~i~~~~~~g~~rG~afV~F~~~~~a~~a~~~l~~~~~~gr~l~V~~a~~~ 136 (314)
.+|+|.||||.|.+++|+.+|+.||.|.+|.|++.+ .++..|||||.|.+..+|++||+.+|...|.+|+|-|.||.++
T Consensus 118 ~rLIIRNLPf~~k~~dLk~vFs~~G~V~Ei~IP~k~-dgklcGFaFV~fk~~~dA~~Al~~~N~~~i~gR~VAVDWAV~K 196 (678)
T KOG0127|consen 118 WRLIIRNLPFKCKKPDLKNVFSNFGKVVEIVIPRKK-DGKLCGFAFVQFKEKKDAEKALEFFNGNKIDGRPVAVDWAVDK 196 (678)
T ss_pred ceEEeecCCcccCcHHHHHHHhhcceEEEEEcccCC-CCCccceEEEEEeeHHHHHHHHHhccCceecCceeEEeeeccc
Confidence 689999999999999999999999999999999765 5566799999999999999999999999999999999999988
Q ss_pred CCC
Q 021295 137 KPN 139 (314)
Q Consensus 137 ~~~ 139 (314)
...
T Consensus 197 d~y 199 (678)
T KOG0127|consen 197 DTY 199 (678)
T ss_pred ccc
Confidence 654
No 18
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.81 E-value=1.9e-19 Score=174.90 Aligned_cols=126 Identities=25% Similarity=0.481 Sum_probs=100.7
Q ss_pred CCCCCCCCcccEEEEEECCHHHHHHHHHccC--ccC-CcEEEEeecCCCCCCCCCCCCcceEEEcCCCCCCCHHHHHHHH
Q 021295 1 MKDRKTGQPRGFGFVTYADPSVVDKVIEDTH--IIN-GKQVEIKRTIPKGAVGSKDFKTKKIFVGGIPSSVNEDEFKDFF 77 (314)
Q Consensus 1 m~d~~tg~~kG~aFV~f~~~~~a~~A~~~~~--~i~-g~~i~v~~~~~~~~~~~~~~~~~~l~V~nLp~~~~e~~l~~~F 77 (314)
|+| .|+++||||||+|.+.++|++||+.++ +|. ++.|.|..+ ...++|||.|||+++++++|+++|
T Consensus 91 ~~D-~sG~sRGfaFV~F~~~e~A~~Ai~~lng~~i~~Gr~l~V~~S----------~~~~rLFVgNLP~~~TeeeL~eeF 159 (578)
T TIGR01648 91 MMD-FSGQNRGYAFVTFCGKEEAKEAVKLLNNYEIRPGRLLGVCIS----------VDNCRLFVGGIPKNKKREEILEEF 159 (578)
T ss_pred EEC-CCCCccceEEEEeCCHHHHHHHHHHcCCCeecCCcccccccc----------ccCceeEeecCCcchhhHHHHHHh
Confidence 467 799999999999999999999999543 342 455554433 235789999999999999999999
Q ss_pred hccCC-eEEEEEe-ecCCCCCcceEEEEEeCChHHHHHHHHhcC--CeeeCCeEEEEeecCCCC
Q 021295 78 MQFGD-VQEHQIM-RDHSTSRSRGFGFITFDTEQAVDDLLAKGN--KLELAGAQVEVKKAEPKK 137 (314)
Q Consensus 78 ~~~G~-v~~v~i~-~~~~~g~~rG~afV~F~~~~~a~~a~~~l~--~~~~~gr~l~V~~a~~~~ 137 (314)
+++.+ |+++.|+ .+..+.++++||||+|+++++|++|+++|+ .+.|.++.|.|+++.++.
T Consensus 160 skv~egvv~vIv~~~~~~kgKnRGFAFVeF~s~edAa~AirkL~~gki~l~Gr~I~VdwA~p~~ 223 (578)
T TIGR01648 160 SKVTEGVVDVIVYHSAADKKKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHVIAVDWAEPEE 223 (578)
T ss_pred hcccCCceEEEEeccccccCccCceEEEEcCCHHHHHHHHHHhhccceEecCceEEEEeecccc
Confidence 99864 4444333 334456789999999999999999999875 467899999999988754
No 19
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=99.81 E-value=1.2e-19 Score=147.32 Aligned_cols=134 Identities=27% Similarity=0.441 Sum_probs=118.3
Q ss_pred CCCCCCCcccEEEEEECCHHHHHHHHH--ccCccCCcEEEEeecCCCCCCCCCCCCcceEEEcCCCCCCCHHHHHHHHhc
Q 021295 2 KDRKTGQPRGFGFVTYADPSVVDKVIE--DTHIINGKQVEIKRTIPKGAVGSKDFKTKKIFVGGIPSSVNEDEFKDFFMQ 79 (314)
Q Consensus 2 ~d~~tg~~kG~aFV~f~~~~~a~~A~~--~~~~i~g~~i~v~~~~~~~~~~~~~~~~~~l~V~nLp~~~~e~~l~~~F~~ 79 (314)
+|+.|...+|||||||.++|+|+=|++ ++..+-+++|+|..+... .+.......|||+||.++++|..|.+.|++
T Consensus 43 kDrv~~~~qGygF~Ef~~eedadYAikiln~VkLYgrpIrv~kas~~---~~nl~vganlfvgNLd~~vDe~~L~dtFsa 119 (203)
T KOG0131|consen 43 KDRVTQKHQGYGFAEFRTEEDADYAIKILNMVKLYGRPIRVNKASAH---QKNLDVGANLFVGNLDPEVDEKLLYDTFSA 119 (203)
T ss_pred hhhhcccccceeEEEEechhhhHHHHHHHHHHHhcCceeEEEecccc---cccccccccccccccCcchhHHHHHHHHHh
Confidence 578889999999999999999999998 666788999999987722 223334579999999999999999999999
Q ss_pred cCCeEE-EEEeecCCCCCcceEEEEEeCChHHHHHHHHhcCCeeeCCeEEEEeecCCCCC
Q 021295 80 FGDVQE-HQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVKKAEPKKP 138 (314)
Q Consensus 80 ~G~v~~-v~i~~~~~~g~~rG~afV~F~~~~~a~~a~~~l~~~~~~gr~l~V~~a~~~~~ 138 (314)
||.|.. -+|+++..|+.+++|+||.|++.|++.+||+.+|+..++.++|.|..+..+..
T Consensus 120 fG~l~~~P~i~rd~~tg~~~~~g~i~~~sfeasd~ai~s~ngq~l~nr~itv~ya~k~~~ 179 (203)
T KOG0131|consen 120 FGVLISPPKIMRDPDTGNPKGFGFINYASFEASDAAIGSMNGQYLCNRPITVSYAFKKDT 179 (203)
T ss_pred ccccccCCcccccccCCCCCCCeEEechhHHHHHHHHHHhccchhcCCceEEEEEEecCC
Confidence 998765 57899999999999999999999999999999999999999999999886643
No 20
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=99.80 E-value=7.8e-19 Score=163.30 Aligned_cols=134 Identities=28% Similarity=0.518 Sum_probs=114.0
Q ss_pred CCCCcccEEEEEECCHHHHHHHHH--ccCccCCcEEEEeecCCCCCCCC-------------------------------
Q 021295 5 KTGQPRGFGFVTYADPSVVDKVIE--DTHIINGKQVEIKRTIPKGAVGS------------------------------- 51 (314)
Q Consensus 5 ~tg~~kG~aFV~f~~~~~a~~A~~--~~~~i~g~~i~v~~~~~~~~~~~------------------------------- 51 (314)
..++.+|||||+|.+..+|.+||+ +.+.|.+++|.|+|++++.....
T Consensus 153 ~dgklcGFaFV~fk~~~dA~~Al~~~N~~~i~gR~VAVDWAV~Kd~ye~ta~~~~~s~Kk~~~eEed~e~~~d~~~~~~~ 232 (678)
T KOG0127|consen 153 KDGKLCGFAFVQFKEKKDAEKALEFFNGNKIDGRPVAVDWAVDKDTYEDTAHEEKQSLKKAVKEEEDKEADEDDGKDFDE 232 (678)
T ss_pred CCCCccceEEEEEeeHHHHHHHHHhccCceecCceeEEeeecccccccccchhhhhhhhhccchhhhcccccccccccch
Confidence 345555999999999999999999 77799999999999876521000
Q ss_pred ----------C---------------------------------------------CCCcceEEEcCCCCCCCHHHHHHH
Q 021295 52 ----------K---------------------------------------------DFKTKKIFVGGIPSSVNEDEFKDF 76 (314)
Q Consensus 52 ----------~---------------------------------------------~~~~~~l~V~nLp~~~~e~~l~~~ 76 (314)
+ ....++|||.|||+++||++|.++
T Consensus 233 Ed~e~d~edeEe~D~~se~~ee~~~~Eee~~~vDd~e~S~~~~~~k~~q~k~~~en~~~~~tVFvRNL~fD~tEEel~~~ 312 (678)
T KOG0127|consen 233 EDGEEDSEDEEETDGNSEAFEEGEESEEEEDDVDDEESSGKKESDKKAQNKTTRENITEGKTVFVRNLPFDTTEEELKEH 312 (678)
T ss_pred hcccccccccccccccchhhhccccccccccccccccccccCcccchhccccccccccccceEEEecCCccccHHHHHHH
Confidence 0 001158999999999999999999
Q ss_pred HhccCCeEEEEEeecCCCCCcceEEEEEeCChHHHHHHHHhc-----CC-eeeCCeEEEEeecCCCCC
Q 021295 77 FMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKG-----NK-LELAGAQVEVKKAEPKKP 138 (314)
Q Consensus 77 F~~~G~v~~v~i~~~~~~g~~rG~afV~F~~~~~a~~a~~~l-----~~-~~~~gr~l~V~~a~~~~~ 138 (314)
|++||+|+.+.|+.++.|++++|+|||.|.++.++.+||+.. .. +.|++|.|+|..|..++.
T Consensus 313 fskFG~v~ya~iV~~k~T~~skGtAFv~Fkt~~~~~~ci~~Aspa~e~g~~ll~GR~Lkv~~Av~Rke 380 (678)
T KOG0127|consen 313 FSKFGEVKYAIIVKDKDTGHSKGTAFVKFKTQIAAQNCIEAASPASEDGSVLLDGRLLKVTLAVTRKE 380 (678)
T ss_pred HHhhccceeEEEEeccCCCCcccceEEEeccHHHHHHHHHhcCccCCCceEEEeccEEeeeeccchHH
Confidence 999999999999999999999999999999999999999975 23 779999999999887654
No 21
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.79 E-value=2.7e-18 Score=166.59 Aligned_cols=128 Identities=13% Similarity=0.180 Sum_probs=106.3
Q ss_pred CcccEEEEEECCHHHHHHHHHc----cCccCCcEEEEeecCCCCCCCC--------CCCCcceEEEcCCCCCCCHHHHHH
Q 021295 8 QPRGFGFVTYADPSVVDKVIED----THIINGKQVEIKRTIPKGAVGS--------KDFKTKKIFVGGIPSSVNEDEFKD 75 (314)
Q Consensus 8 ~~kG~aFV~f~~~~~a~~A~~~----~~~i~g~~i~v~~~~~~~~~~~--------~~~~~~~l~V~nLp~~~~e~~l~~ 75 (314)
++|+||||+|+++++|++||+. ...|.++.|.|+++..++.... ......+|||.||++++++++|++
T Consensus 36 ~~k~~afVef~~~e~A~~Ai~~~~~~~~~l~g~~l~v~~s~~~~~~~~~~~~~~~~~~~~~~~v~v~nl~~~vt~~~L~~ 115 (481)
T TIGR01649 36 PGKRQALVEFEDEESAKACVNFATSVPIYIRGQPAFFNYSTSQEIKRDGNSDFDSAGPNKVLRVIVENPMYPITLDVLYQ 115 (481)
T ss_pred CCCCEEEEEeCchHHHHHHHHHhhcCCceEcCeEEEEEecCCcccccCCCCcccCCCCCceEEEEEcCCCCCCCHHHHHH
Confidence 4679999999999999999973 3578999999999865432211 112334799999999999999999
Q ss_pred HHhccCCeEEEEEeecCCCCCcceEEEEEeCChHHHHHHHHhcCCeeeCC--eEEEEeecCCCCCC
Q 021295 76 FFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAG--AQVEVKKAEPKKPN 139 (314)
Q Consensus 76 ~F~~~G~v~~v~i~~~~~~g~~rG~afV~F~~~~~a~~a~~~l~~~~~~g--r~l~V~~a~~~~~~ 139 (314)
+|++||+|++|.|+++.. +++|||+|+++++|++|++.||+.+|.+ +.|+|++++.....
T Consensus 116 ~F~~~G~V~~v~i~~~~~----~~~afVef~~~~~A~~A~~~Lng~~i~~~~~~l~v~~sk~~~l~ 177 (481)
T TIGR01649 116 IFNPYGKVLRIVTFTKNN----VFQALVEFESVNSAQHAKAALNGADIYNGCCTLKIEYAKPTRLN 177 (481)
T ss_pred HHhccCCEEEEEEEecCC----ceEEEEEECCHHHHHHHHHHhcCCcccCCceEEEEEEecCCCce
Confidence 999999999999987643 4689999999999999999999999965 58999999876543
No 22
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=99.78 E-value=1.3e-18 Score=154.87 Aligned_cols=139 Identities=24% Similarity=0.493 Sum_probs=120.5
Q ss_pred CCCCCCCcccEEEEEECCHHHHHHHHHcc--CccCCcEEEEeecCCCCCCCC-------CCCCcceEEEcCCCCCCCHHH
Q 021295 2 KDRKTGQPRGFGFVTYADPSVVDKVIEDT--HIINGKQVEIKRTIPKGAVGS-------KDFKTKKIFVGGIPSSVNEDE 72 (314)
Q Consensus 2 ~d~~tg~~kG~aFV~f~~~~~a~~A~~~~--~~i~g~~i~v~~~~~~~~~~~-------~~~~~~~l~V~nLp~~~~e~~ 72 (314)
||+.|++.|+||||||+-+|.|+.|++.+ ..+.++.|+|.+.......+. +...-++|||..+..+++|+|
T Consensus 147 WDp~T~kHKgFAFVEYEvPEaAqLAlEqMNg~mlGGRNiKVgrPsNmpQAQpiID~vqeeAk~fnRiYVaSvHpDLSe~D 226 (544)
T KOG0124|consen 147 WDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRPSNMPQAQPIIDMVQEEAKKFNRIYVASVHPDLSETD 226 (544)
T ss_pred cccccccccceEEEEEeCcHHHHHHHHHhccccccCccccccCCCCCcccchHHHHHHHHHHhhheEEeeecCCCccHHH
Confidence 89999999999999999999999999954 478899999886443322211 223457999999999999999
Q ss_pred HHHHHhccCCeEEEEEeecCCCCCcceEEEEEeCChHHHHHHHHhcCCeeeCCeEEEEeecCCCCCCC
Q 021295 73 FKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVKKAEPKKPNL 140 (314)
Q Consensus 73 l~~~F~~~G~v~~v~i~~~~~~g~~rG~afV~F~~~~~a~~a~~~l~~~~~~gr~l~V~~a~~~~~~~ 140 (314)
|+.+|+.||+|+.|.+.+++....+|||.||||++..+..+||..||-+++.++.|+|-.+......+
T Consensus 227 iKSVFEAFG~I~~C~LAr~pt~~~HkGyGfiEy~n~qs~~eAiasMNlFDLGGQyLRVGk~vTPP~aL 294 (544)
T KOG0124|consen 227 IKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASMNLFDLGGQYLRVGKCVTPPDAL 294 (544)
T ss_pred HHHHHHhhcceeeEEeeccCCCCCccceeeEEeccccchHHHhhhcchhhcccceEecccccCCCchh
Confidence 99999999999999999999999999999999999999999999999999999999998876655433
No 23
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.78 E-value=4.6e-18 Score=164.99 Aligned_cols=126 Identities=15% Similarity=0.294 Sum_probs=103.2
Q ss_pred cccEEEEEECCHHHHHHHHH--ccCccCCcEEEEeecCCCCCCCC---------------------------------CC
Q 021295 9 PRGFGFVTYADPSVVDKVIE--DTHIINGKQVEIKRTIPKGAVGS---------------------------------KD 53 (314)
Q Consensus 9 ~kG~aFV~f~~~~~a~~A~~--~~~~i~g~~i~v~~~~~~~~~~~---------------------------------~~ 53 (314)
.|+||||+|++.++|++||+ +...|.++.|.|..+........ ..
T Consensus 312 ~~g~afV~f~~~~~A~~Ai~~lng~~l~g~~l~v~~s~~~~~~~~~~~~~~~~~~~~~d~~~~~~~r~~~~~~~~~~~~~ 391 (481)
T TIGR01649 312 KKETALIEMADPYQAQLALTHLNGVKLFGKPLRVCPSKQQNVQPPREGQLDDGLTSYKDYSSSRNHRFKKPGSANKNNIQ 391 (481)
T ss_pred CCCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEcccccccCCCCCcCcCCCcccccccCCccccCCCcccccccccC
Confidence 47999999999999999998 45588999999987533210000 01
Q ss_pred CCcceEEEcCCCCCCCHHHHHHHHhccCC--eEEEEEeecCCCCCcceEEEEEeCChHHHHHHHHhcCCeeeCCeE----
Q 021295 54 FKTKKIFVGGIPSSVNEDEFKDFFMQFGD--VQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQ---- 127 (314)
Q Consensus 54 ~~~~~l~V~nLp~~~~e~~l~~~F~~~G~--v~~v~i~~~~~~g~~rG~afV~F~~~~~a~~a~~~l~~~~~~gr~---- 127 (314)
.++++|||.|||++++|++|+++|++||. |+.|+|+... + ..+++|||+|++.++|.+||..||...|.++.
T Consensus 392 ~ps~~L~v~NLp~~~tee~L~~lF~~~G~~~i~~ik~~~~~-~-~~~~~gfVeF~~~e~A~~Al~~ln~~~l~~~~~~~~ 469 (481)
T TIGR01649 392 PPSATLHLSNIPLSVSEEDLKELFAENGVHKVKKFKFFPKD-N-ERSKMGLLEWESVEDAVEALIALNHHQLNEPNGSAP 469 (481)
T ss_pred CCCcEEEEecCCCCCCHHHHHHHHHhcCCccceEEEEecCC-C-CcceeEEEEcCCHHHHHHHHHHhcCCccCCCCCCcc
Confidence 24578999999999999999999999998 8888887653 2 25789999999999999999999999999885
Q ss_pred --EEEeecCCC
Q 021295 128 --VEVKKAEPK 136 (314)
Q Consensus 128 --l~V~~a~~~ 136 (314)
|+|.+++++
T Consensus 470 ~~lkv~fs~~~ 480 (481)
T TIGR01649 470 YHLKVSFSTSR 480 (481)
T ss_pred ceEEEEeccCC
Confidence 999888764
No 24
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.77 E-value=6.1e-18 Score=165.53 Aligned_cols=135 Identities=19% Similarity=0.273 Sum_probs=109.0
Q ss_pred CCCCCCCCcccEEEEEECCHHHHHHHHH--ccCccCCcEEEEeecCCCCCCC------------------------CCCC
Q 021295 1 MKDRKTGQPRGFGFVTYADPSVVDKVIE--DTHIINGKQVEIKRTIPKGAVG------------------------SKDF 54 (314)
Q Consensus 1 m~d~~tg~~kG~aFV~f~~~~~a~~A~~--~~~~i~g~~i~v~~~~~~~~~~------------------------~~~~ 54 (314)
|+|+.|++++|||||+|.+.++|++||+ +...|.++.|.|+++....... ....
T Consensus 328 ~~~~~~g~~~g~afv~f~~~~~a~~A~~~l~g~~~~~~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 407 (509)
T TIGR01642 328 IKDIATGLSKGYAFCEYKDPSVTDVAIAALNGKDTGDNKLHVQRACVGANQATIDTSNGMAPVTLLAKALSQSILQIGGK 407 (509)
T ss_pred EecCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECccCCCCCCccccccccccccccccchhhhccccCC
Confidence 4678899999999999999999999998 4468889999998864321110 0123
Q ss_pred CcceEEEcCCCCCC----------CHHHHHHHHhccCCeEEEEEeecC---CCCCcceEEEEEeCChHHHHHHHHhcCCe
Q 021295 55 KTKKIFVGGIPSSV----------NEDEFKDFFMQFGDVQEHQIMRDH---STSRSRGFGFITFDTEQAVDDLLAKGNKL 121 (314)
Q Consensus 55 ~~~~l~V~nLp~~~----------~e~~l~~~F~~~G~v~~v~i~~~~---~~g~~rG~afV~F~~~~~a~~a~~~l~~~ 121 (314)
++++|+|.||.... ..++|+++|++||.|+.|.|+++. .+...+|+|||+|+++++|++||+.||+.
T Consensus 408 ~s~v~~l~N~~~~~~l~~d~~~~~~~edl~~~f~~~G~v~~v~i~~~~~~~~~~~~~G~~fV~F~~~e~A~~A~~~lnGr 487 (509)
T TIGR01642 408 PTKVVQLTNLVTGDDLMDDEEYEEIYEDVKTEFSKYGPLINIVIPRPNGDRNSTPGVGKVFLEYADVRSAEKAMEGMNGR 487 (509)
T ss_pred CceEEEeccCCchhHhcCcchHHHHHHHHHHHHHhcCCeeEEEeeccCcCCCcCCCcceEEEEECCHHHHHHHHHHcCCC
Confidence 56789999996421 236799999999999999998752 34456899999999999999999999999
Q ss_pred eeCCeEEEEeecCC
Q 021295 122 ELAGAQVEVKKAEP 135 (314)
Q Consensus 122 ~~~gr~l~V~~a~~ 135 (314)
+|.++.|+|.+...
T Consensus 488 ~~~gr~v~~~~~~~ 501 (509)
T TIGR01642 488 KFNDRVVVAAFYGE 501 (509)
T ss_pred EECCeEEEEEEeCH
Confidence 99999999998764
No 25
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.74 E-value=2.3e-17 Score=153.50 Aligned_cols=122 Identities=22% Similarity=0.541 Sum_probs=109.7
Q ss_pred CCCCCCCcccEEEEEECCHHHHHHHHH--ccCccCCcEEEEeecCCCCCCCCCCCCcceEEEcCCCCCCCHHHHHHHHhc
Q 021295 2 KDRKTGQPRGFGFVTYADPSVVDKVIE--DTHIINGKQVEIKRTIPKGAVGSKDFKTKKIFVGGIPSSVNEDEFKDFFMQ 79 (314)
Q Consensus 2 ~d~~tg~~kG~aFV~f~~~~~a~~A~~--~~~~i~g~~i~v~~~~~~~~~~~~~~~~~~l~V~nLp~~~~e~~l~~~F~~ 79 (314)
+|. | |-|||||.|.++++|++||+ +-..+.+++|++.|+...... |||.||+.+++..+|.++|+.
T Consensus 32 ~d~-t--slgy~yvnf~~~~da~~A~~~~n~~~~~~~~~rim~s~rd~~~---------~~i~nl~~~~~~~~~~d~f~~ 99 (369)
T KOG0123|consen 32 RDA-T--SLGYAYVNFQQPADAERALDTMNFDVLKGKPIRIMWSQRDPSL---------VFIKNLDESIDNKSLYDTFSE 99 (369)
T ss_pred ecC-C--ccceEEEecCCHHHHHHHHHHcCCcccCCcEEEeehhccCCce---------eeecCCCcccCcHHHHHHHHh
Confidence 566 6 99999999999999999999 445899999999987654333 999999999999999999999
Q ss_pred cCCeEEEEEeecCCCCCcceEEEEEeCChHHHHHHHHhcCCeeeCCeEEEEeecCCCCC
Q 021295 80 FGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVKKAEPKKP 138 (314)
Q Consensus 80 ~G~v~~v~i~~~~~~g~~rG~afV~F~~~~~a~~a~~~l~~~~~~gr~l~V~~a~~~~~ 138 (314)
||+|..|+|.++.. + +++| ||+|+++++|++||++||+..+.+++|.|.....++.
T Consensus 100 ~g~ilS~kv~~~~~-g-~kg~-FV~f~~e~~a~~ai~~~ng~ll~~kki~vg~~~~~~e 155 (369)
T KOG0123|consen 100 FGNILSCKVATDEN-G-SKGY-FVQFESEESAKKAIEKLNGMLLNGKKIYVGLFERKEE 155 (369)
T ss_pred hcCeeEEEEEEcCC-C-ceee-EEEeCCHHHHHHHHHHhcCcccCCCeeEEeeccchhh
Confidence 99999999999964 3 9999 9999999999999999999999999999987776654
No 26
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.73 E-value=1.9e-17 Score=153.27 Aligned_cols=85 Identities=22% Similarity=0.426 Sum_probs=80.3
Q ss_pred CCCCcceEEEcCCCCCCCHHHHHHHHhccCCeEEEEEeecCCCCCcceEEEEEeCChHHHHHHHHhcCCeeeCCeEEEEe
Q 021295 52 KDFKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVK 131 (314)
Q Consensus 52 ~~~~~~~l~V~nLp~~~~e~~l~~~F~~~G~v~~v~i~~~~~~g~~rG~afV~F~~~~~a~~a~~~l~~~~~~gr~l~V~ 131 (314)
.....++|||.+||+++||++|+++|++|++|++|+|++|+.++++++||||+|+++++|++||+.||+++|.+++|+|.
T Consensus 103 ~~~~~~~LfVgnLp~~~te~~L~~lF~~~G~V~~v~i~~d~~tg~srGyaFVeF~~~e~A~~Ai~~LnG~~l~gr~i~V~ 182 (346)
T TIGR01659 103 TNNSGTNLIVNYLPQDMTDRELYALFRTIGPINTCRIMRDYKTGYSFGYAFVDFGSEADSQRAIKNLNGITVRNKRLKVS 182 (346)
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccCcEEEEEEccHHHHHHHHHHcCCCccCCceeeee
Confidence 44567899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCCC
Q 021295 132 KAEPK 136 (314)
Q Consensus 132 ~a~~~ 136 (314)
++++.
T Consensus 183 ~a~p~ 187 (346)
T TIGR01659 183 YARPG 187 (346)
T ss_pred ccccc
Confidence 88764
No 27
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=99.73 E-value=5.9e-18 Score=158.05 Aligned_cols=138 Identities=25% Similarity=0.465 Sum_probs=118.3
Q ss_pred CCCCCCCCcccEEEEEECCHHHHHHHHH-ccCccCCcEEEEeecCCCCCC--------C--CCCCCcceEEEcCCCCCCC
Q 021295 1 MKDRKTGQPRGFGFVTYADPSVVDKVIE-DTHIINGKQVEIKRTIPKGAV--------G--SKDFKTKKIFVGGIPSSVN 69 (314)
Q Consensus 1 m~d~~tg~~kG~aFV~f~~~~~a~~A~~-~~~~i~g~~i~v~~~~~~~~~--------~--~~~~~~~~l~V~nLp~~~~ 69 (314)
|.|+.+.++||.|+|+|.|.+.+..||. ..+.+.+.+|.|+.+...... . ....+...|||+||.++++
T Consensus 212 I~Dr~s~rskgi~Yvef~D~~sVp~aiaLsGqrllg~pv~vq~sEaeknr~a~~s~a~~~k~~~~p~~rl~vgnLHfNit 291 (549)
T KOG0147|consen 212 IGDRNSRRSKGIAYVEFCDEQSVPLAIALSGQRLLGVPVIVQLSEAEKNRAANASPALQGKGFTGPMRRLYVGNLHFNIT 291 (549)
T ss_pred eccccchhhcceeEEEEecccchhhHhhhcCCcccCceeEecccHHHHHHHHhccccccccccccchhhhhhcccccCch
Confidence 6789999999999999999999999887 666788888888765432211 1 1122334599999999999
Q ss_pred HHHHHHHHhccCCeEEEEEeecCCCCCcceEEEEEeCChHHHHHHHHhcCCeeeCCeEEEEeecCCCCC
Q 021295 70 EDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVKKAEPKKP 138 (314)
Q Consensus 70 e~~l~~~F~~~G~v~~v~i~~~~~~g~~rG~afV~F~~~~~a~~a~~~l~~~~~~gr~l~V~~a~~~~~ 138 (314)
|++|+.+|+.|+.|+.|.+++|.+|+++|+|+||+|.+.++|++|+++||+++|.++.|+|.....+..
T Consensus 292 e~~lr~ifepfg~Ie~v~l~~d~~tG~skgfGfi~f~~~~~ar~a~e~lngfelAGr~ikV~~v~~r~~ 360 (549)
T KOG0147|consen 292 EDMLRGIFEPFGKIENVQLTKDSETGRSKGFGFITFVNKEDARKALEQLNGFELAGRLIKVSVVTERVD 360 (549)
T ss_pred HHHHhhhccCcccceeeeeccccccccccCcceEEEecHHHHHHHHHHhccceecCceEEEEEeeeecc
Confidence 999999999999999999999999999999999999999999999999999999999999987766543
No 28
>KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]
Probab=99.71 E-value=3.5e-17 Score=142.37 Aligned_cols=99 Identities=17% Similarity=0.365 Sum_probs=88.2
Q ss_pred CCCCCCCCCCCCcceEEEcCCCCCCCHHHHHHHHhccCCeEEEEEeecCCCCCcceEEEEEeCChHHHHHHHHhcCCeee
Q 021295 44 IPKGAVGSKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLEL 123 (314)
Q Consensus 44 ~~~~~~~~~~~~~~~l~V~nLp~~~~e~~l~~~F~~~G~v~~v~i~~~~~~g~~rG~afV~F~~~~~a~~a~~~l~~~~~ 123 (314)
.|.........+-+||||.-|+++++|.+|+.+|++||+|+.|+|+.|..|++++|||||+|+++.++.+|.+..+++.|
T Consensus 89 dP~~dp~a~gDPy~TLFv~RLnydT~EskLrreF~~YG~IkrirlV~d~vTgkskGYAFIeye~erdm~~AYK~adG~~I 168 (335)
T KOG0113|consen 89 DPNNDPNAIGDPYKTLFVARLNYDTSESKLRREFEKYGPIKRIRLVRDKVTGKSKGYAFIEYEHERDMKAAYKDADGIKI 168 (335)
T ss_pred CCCCCCcccCCccceeeeeeccccccHHHHHHHHHhcCcceeEEEeeecccCCccceEEEEeccHHHHHHHHHhccCcee
Confidence 34444445567789999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCeEEEEeecCCCCCCCCC
Q 021295 124 AGAQVEVKKAEPKKPNLPQ 142 (314)
Q Consensus 124 ~gr~l~V~~a~~~~~~~~~ 142 (314)
+++.|.|..........+.
T Consensus 169 dgrri~VDvERgRTvkgW~ 187 (335)
T KOG0113|consen 169 DGRRILVDVERGRTVKGWL 187 (335)
T ss_pred cCcEEEEEecccccccccc
Confidence 9999999887776655443
No 29
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.69 E-value=2.2e-16 Score=112.10 Aligned_cols=70 Identities=33% Similarity=0.805 Sum_probs=67.3
Q ss_pred EEEcCCCCCCCHHHHHHHHhccCCeEEEEEeecCCCCCcceEEEEEeCChHHHHHHHHhcCCeeeCCeEEE
Q 021295 59 IFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVE 129 (314)
Q Consensus 59 l~V~nLp~~~~e~~l~~~F~~~G~v~~v~i~~~~~~g~~rG~afV~F~~~~~a~~a~~~l~~~~~~gr~l~ 129 (314)
|||.|||+++++++|+++|++||+|+.+.|+.+ .+++++++|||+|+++++|++|++.|++..+.+++|+
T Consensus 1 l~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~-~~~~~~~~a~V~F~~~~~a~~a~~~l~g~~~~~~~ir 70 (70)
T PF00076_consen 1 LYVGNLPPDVTEEELRDFFSQFGKIESIKVMRN-SSGKSKGYAFVEFESEEDAEKALEELNGKKINGRKIR 70 (70)
T ss_dssp EEEESETTTSSHHHHHHHHHTTSTEEEEEEEEE-TTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred cEEcCCCCcCCHHHHHHHHHHhhhccccccccc-ccccccceEEEEEcCHHHHHHHHHHcCCCEECccCcC
Confidence 799999999999999999999999999999998 6788999999999999999999999999999999885
No 30
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.69 E-value=8.5e-17 Score=154.13 Aligned_cols=131 Identities=26% Similarity=0.474 Sum_probs=113.6
Q ss_pred CcccEEEEEECCHHHHHHHHHc--cCccCCcEEEEeecCCCCCC-----CCCCCCcceEEEcCCCCCCCHHHHHHHHhcc
Q 021295 8 QPRGFGFVTYADPSVVDKVIED--THIINGKQVEIKRTIPKGAV-----GSKDFKTKKIFVGGIPSSVNEDEFKDFFMQF 80 (314)
Q Consensus 8 ~~kG~aFV~f~~~~~a~~A~~~--~~~i~g~~i~v~~~~~~~~~-----~~~~~~~~~l~V~nLp~~~~e~~l~~~F~~~ 80 (314)
.|.||+||+|.++++|+.|+++ .+.|++..|.|+.+..+... .......++|+|.|||+.++..+|+++|..|
T Consensus 558 lSmGfgFVEF~~~e~A~~a~k~lqgtvldGH~l~lk~S~~k~~~~~gK~~~~kk~~tKIlVRNipFeAt~rEVr~LF~aF 637 (725)
T KOG0110|consen 558 LSMGFGFVEFAKPESAQAALKALQGTVLDGHKLELKISENKPASTVGKKKSKKKKGTKILVRNIPFEATKREVRKLFTAF 637 (725)
T ss_pred cccceeEEEecCHHHHHHHHHHhcCceecCceEEEEeccCccccccccccccccccceeeeeccchHHHHHHHHHHHhcc
Confidence 4669999999999999999995 46999999999987722211 1223335799999999999999999999999
Q ss_pred CCeEEEEEeecCCCCCcceEEEEEeCChHHHHHHHHhcCCeeeCCeEEEEeecCCCCC
Q 021295 81 GDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVKKAEPKKP 138 (314)
Q Consensus 81 G~v~~v~i~~~~~~g~~rG~afV~F~~~~~a~~a~~~l~~~~~~gr~l~V~~a~~~~~ 138 (314)
|+|+.|+|+.......++|||||+|.++++|..|+++|..+.|-+|.|.++||.....
T Consensus 638 GqlksvRlPKK~~k~a~rGF~Fv~f~t~~ea~nA~~al~STHlyGRrLVLEwA~~d~~ 695 (725)
T KOG0110|consen 638 GQLKSVRLPKKIGKGAHRGFGFVDFLTPREAKNAFDALGSTHLYGRRLVLEWAKSDNT 695 (725)
T ss_pred cceeeeccchhhcchhhccceeeeccCcHHHHHHHHhhcccceechhhheehhccchH
Confidence 9999999998766677899999999999999999999999999999999999987654
No 31
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=99.68 E-value=7.5e-16 Score=131.75 Aligned_cols=136 Identities=22% Similarity=0.332 Sum_probs=112.6
Q ss_pred CCCCCCCCcccEEEEEECCHHHHHHHHHcc--C--ccCCcEEEEeecCCCCCCCC-------------------------
Q 021295 1 MKDRKTGQPRGFGFVTYADPSVVDKVIEDT--H--IINGKQVEIKRTIPKGAVGS------------------------- 51 (314)
Q Consensus 1 m~d~~tg~~kG~aFV~f~~~~~a~~A~~~~--~--~i~g~~i~v~~~~~~~~~~~------------------------- 51 (314)
+.|..|+.+||-+||.|...++|++|++.+ + .-...+|.|+.+........
T Consensus 160 L~dqvtg~srGVgFiRFDKr~EAe~AIk~lNG~~P~g~tepItVKFannPsq~t~~a~ls~ly~sp~rr~~Gp~hh~~~r 239 (360)
T KOG0145|consen 160 LVDQVTGLSRGVGFIRFDKRIEAEEAIKGLNGQKPSGCTEPITVKFANNPSQKTNQALLSQLYQSPARRYGGPMHHQAQR 239 (360)
T ss_pred hhhcccceecceeEEEecchhHHHHHHHhccCCCCCCCCCCeEEEecCCcccccchhhhHHhhcCccccCCCcccchhhh
Confidence 357789999999999999999999999833 2 22346677776532210000
Q ss_pred ----------------------------------CCCCcceEEEcCCCCCCCHHHHHHHHhccCCeEEEEEeecCCCCCc
Q 021295 52 ----------------------------------KDFKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRS 97 (314)
Q Consensus 52 ----------------------------------~~~~~~~l~V~nLp~~~~e~~l~~~F~~~G~v~~v~i~~~~~~g~~ 97 (314)
......+|||-||..+++|..|.++|..||.|..|+|++|..|.+.
T Consensus 240 ~r~~~~~~~~~~~~rfsP~~~d~m~~l~~~~lp~~~~~g~ciFvYNLspd~de~~LWQlFgpFGAv~nVKvirD~ttnkC 319 (360)
T KOG0145|consen 240 FRLDNLLNPHAAQARFSPMTIDGMSGLAGVNLPGGPGGGWCIFVYNLSPDADESILWQLFGPFGAVTNVKVIRDFTTNKC 319 (360)
T ss_pred hccccccchhhhhccCCCccccccceeeeeccCCCCCCeeEEEEEecCCCchHhHHHHHhCcccceeeEEEEecCCcccc
Confidence 0112248999999999999999999999999999999999999999
Q ss_pred ceEEEEEeCChHHHHHHHHhcCCeeeCCeEEEEeecCCC
Q 021295 98 RGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVKKAEPK 136 (314)
Q Consensus 98 rG~afV~F~~~~~a~~a~~~l~~~~~~gr~l~V~~a~~~ 136 (314)
|||+||++++-++|..||..||+..+.++.|.|.+...+
T Consensus 320 KGfgFVtMtNYdEAamAi~sLNGy~lg~rvLQVsFKtnk 358 (360)
T KOG0145|consen 320 KGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSFKTNK 358 (360)
T ss_pred cceeEEEecchHHHHHHHHHhcCccccceEEEEEEecCC
Confidence 999999999999999999999999999999999987654
No 32
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=99.68 E-value=1.1e-16 Score=138.77 Aligned_cols=117 Identities=21% Similarity=0.489 Sum_probs=106.4
Q ss_pred ccEEEEEECCHHHHHHHHHccC--ccCCcEEEEeecCCCCCCCCCCCCcceEEEcCCCCCCCHHHHHHHHhccCCeEEEE
Q 021295 10 RGFGFVTYADPSVVDKVIEDTH--IINGKQVEIKRTIPKGAVGSKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQ 87 (314)
Q Consensus 10 kG~aFV~f~~~~~a~~A~~~~~--~i~g~~i~v~~~~~~~~~~~~~~~~~~l~V~nLp~~~~e~~l~~~F~~~G~v~~v~ 87 (314)
|=|+||..+|..+++.|+.+++ +|++..|.|+.++.+ ...+.+|+|+||.+.++.+||++.|++||+|++++
T Consensus 36 KNYgFVHiEdktaaedairNLhgYtLhg~nInVeaSksK------sk~stkl~vgNis~tctn~ElRa~fe~ygpviecd 109 (346)
T KOG0109|consen 36 KNYGFVHIEDKTAAEDAIRNLHGYTLHGVNINVEASKSK------SKASTKLHVGNISPTCTNQELRAKFEKYGPVIECD 109 (346)
T ss_pred cccceEEeecccccHHHHhhcccceecceEEEEEecccc------CCCccccccCCCCccccCHHHhhhhcccCCceeee
Confidence 5599999999999999999776 889999999987765 44578999999999999999999999999999999
Q ss_pred EeecCCCCCcceEEEEEeCChHHHHHHHHhcCCeeeCCeEEEEeecCCCCCCC
Q 021295 88 IMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVKKAEPKKPNL 140 (314)
Q Consensus 88 i~~~~~~g~~rG~afV~F~~~~~a~~a~~~l~~~~~~gr~l~V~~a~~~~~~~ 140 (314)
|++| |+||.|+-.++|..||+.|++.+|.+++|+|.....+....
T Consensus 110 ivkd--------y~fvh~d~~eda~~air~l~~~~~~gk~m~vq~stsrlrta 154 (346)
T KOG0109|consen 110 IVKD--------YAFVHFDRAEDAVEAIRGLDNTEFQGKRMHVQLSTSRLRTA 154 (346)
T ss_pred eecc--------eeEEEEeeccchHHHHhcccccccccceeeeeeeccccccC
Confidence 9977 99999999999999999999999999999999988765443
No 33
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.67 E-value=1.3e-15 Score=147.15 Aligned_cols=132 Identities=17% Similarity=0.300 Sum_probs=106.3
Q ss_pred CCCCCCCCcccEEEEEECCHHHHHHHHH--ccCccCCcEEEEeecCCCCCC-----------------------------
Q 021295 1 MKDRKTGQPRGFGFVTYADPSVVDKVIE--DTHIINGKQVEIKRTIPKGAV----------------------------- 49 (314)
Q Consensus 1 m~d~~tg~~kG~aFV~f~~~~~a~~A~~--~~~~i~g~~i~v~~~~~~~~~----------------------------- 49 (314)
++|+.|+++|+||||+|.+.++|++||+ +...|.++.|.|.++......
T Consensus 219 ~~d~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~i~g~~i~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (457)
T TIGR01622 219 HRDPETGRSKGFGFIQFHDAEEAKEALEVMNGFELAGRPIKVGYAQDSTYLLDAANTFEDIDKQQQMGKNLNTEEREQLM 298 (457)
T ss_pred EEcCCCCccceEEEEEECCHHHHHHHHHhcCCcEECCEEEEEEEccCCCccccchhhhccccccccCCcCCCccchHHHH
Confidence 3577889999999999999999999998 445889999999884211000
Q ss_pred -------------------------------------C------------------C--CCCCcceEEEcCCCCCCC---
Q 021295 50 -------------------------------------G------------------S--KDFKTKKIFVGGIPSSVN--- 69 (314)
Q Consensus 50 -------------------------------------~------------------~--~~~~~~~l~V~nLp~~~~--- 69 (314)
. . ....+++|+|.||....+
T Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~n~~~~~~~~~ 378 (457)
T TIGR01622 299 EKLDRDDGDGGLLIPGTGSKIALMQKLQRDGIIDPNIPSRYATGALAIMARNSFVPSTNNNLATTCLVLSNMFDPATEEE 378 (457)
T ss_pred HhhccCCCCccccCCCccchhhhhccccccccccccccccccccccccccCCCCCCcccCCCCCcEEEEecCCCCccccc
Confidence 0 0 113557889999965544
Q ss_pred -------HHHHHHHHhccCCeEEEEEeecCCCCCcceEEEEEeCChHHHHHHHHhcCCeeeCCeEEEEeecCCC
Q 021295 70 -------EDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVKKAEPK 136 (314)
Q Consensus 70 -------e~~l~~~F~~~G~v~~v~i~~~~~~g~~rG~afV~F~~~~~a~~a~~~l~~~~~~gr~l~V~~a~~~ 136 (314)
++||+++|++||+|++|.|+.. ...|++||+|+++++|++|++.||+..|+++.|.|.+....
T Consensus 379 ~~~~~~~~~dv~~e~~k~G~v~~v~v~~~----~~~G~~fV~F~~~e~A~~A~~~lnGr~f~gr~i~~~~~~~~ 448 (457)
T TIGR01622 379 PNFDNEILDDVKEECSKYGGVVHIYVDTK----NSAGKIYLKFSSVDAALAAFQALNGRYFGGKMITAAFVVND 448 (457)
T ss_pred chHHHHHHHHHHHHHHhcCCeeEEEEeCC----CCceeEEEEECCHHHHHHHHHHhcCcccCCeEEEEEEEcHH
Confidence 3689999999999999999743 35799999999999999999999999999999999987654
No 34
>KOG0122 consensus Translation initiation factor 3, subunit g (eIF-3g) [Translation, ribosomal structure and biogenesis]
Probab=99.67 E-value=2.9e-16 Score=133.33 Aligned_cols=82 Identities=23% Similarity=0.464 Sum_probs=79.6
Q ss_pred CcceEEEcCCCCCCCHHHHHHHHhccCCeEEEEEeecCCCCCcceEEEEEeCChHHHHHHHHhcCCeeeCCeEEEEeecC
Q 021295 55 KTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVKKAE 134 (314)
Q Consensus 55 ~~~~l~V~nLp~~~~e~~l~~~F~~~G~v~~v~i~~~~~~g~~rG~afV~F~~~~~a~~a~~~l~~~~~~gr~l~V~~a~ 134 (314)
++.+|-|.||+.+++|++|+++|.+||.|.+|.|.+|+.|+.+||||||+|++.++|.+||+.||++-++.-.|+|+|++
T Consensus 188 D~~tvRvtNLsed~~E~dL~eLf~~fg~i~rvylardK~TG~~kGFAFVtF~sRddA~rAI~~LnG~gyd~LILrvEwsk 267 (270)
T KOG0122|consen 188 DEATVRVTNLSEDMREDDLEELFRPFGPITRVYLARDKETGLSKGFAFVTFESRDDAARAIADLNGYGYDNLILRVEWSK 267 (270)
T ss_pred ccceeEEecCccccChhHHHHHhhccCccceeEEEEccccCcccceEEEEEecHHHHHHHHHHccCcccceEEEEEEecC
Confidence 56789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CC
Q 021295 135 PK 136 (314)
Q Consensus 135 ~~ 136 (314)
|+
T Consensus 268 P~ 269 (270)
T KOG0122|consen 268 PS 269 (270)
T ss_pred CC
Confidence 85
No 35
>KOG0149 consensus Predicted RNA-binding protein SEB4 (RRM superfamily) [General function prediction only]
Probab=99.66 E-value=2e-16 Score=133.74 Aligned_cols=83 Identities=29% Similarity=0.561 Sum_probs=76.5
Q ss_pred CCCCcceEEEcCCCCCCCHHHHHHHHhccCCeEEEEEeecCCCCCcceEEEEEeCChHHHHHHHHhcCCeeeCCeEEEEe
Q 021295 52 KDFKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVK 131 (314)
Q Consensus 52 ~~~~~~~l~V~nLp~~~~e~~l~~~F~~~G~v~~v~i~~~~~~g~~rG~afV~F~~~~~a~~a~~~l~~~~~~gr~l~V~ 131 (314)
.+..-++|||++|+|+++.|+|+++|++||+|+++.|+.|+.|+++|||+||+|.|.|+|++|++. .+-.|++|+..|+
T Consensus 8 ~DT~~TKifVggL~w~T~~~~l~~yFeqfGeI~eavvitd~~t~rskGyGfVTf~d~~aa~rAc~d-p~piIdGR~aNcn 86 (247)
T KOG0149|consen 8 GDTTFTKIFVGGLAWETHKETLRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFRDAEAATRACKD-PNPIIDGRKANCN 86 (247)
T ss_pred CCceEEEEEEcCcccccchHHHHHHHHHhCceEEEEEEeccCCccccceeeEEeecHHHHHHHhcC-CCCcccccccccc
Confidence 345568999999999999999999999999999999999999999999999999999999999998 4557999999888
Q ss_pred ecCC
Q 021295 132 KAEP 135 (314)
Q Consensus 132 ~a~~ 135 (314)
+|.-
T Consensus 87 lA~l 90 (247)
T KOG0149|consen 87 LASL 90 (247)
T ss_pred hhhh
Confidence 8765
No 36
>KOG0121 consensus Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) [RNA processing and modification]
Probab=99.66 E-value=2.4e-16 Score=121.13 Aligned_cols=83 Identities=17% Similarity=0.298 Sum_probs=78.6
Q ss_pred CCcceEEEcCCCCCCCHHHHHHHHhccCCeEEEEEeecCCCCCcceEEEEEeCChHHHHHHHHhcCCeeeCCeEEEEeec
Q 021295 54 FKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVKKA 133 (314)
Q Consensus 54 ~~~~~l~V~nLp~~~~e~~l~~~F~~~G~v~~v~i~~~~~~g~~rG~afV~F~~~~~a~~a~~~l~~~~~~gr~l~V~~a 133 (314)
.++++|||+||++.++||+|.++|+++|+|..|.|-.|+.+..+.|||||+|-+.++|+.|++-++++.|+.++|.|.|.
T Consensus 34 r~S~tvyVgNlSfyttEEqiyELFs~cG~irriiMGLdr~kktpCGFCFVeyy~~~dA~~AlryisgtrLddr~ir~D~D 113 (153)
T KOG0121|consen 34 RKSCTVYVGNLSFYTTEEQIYELFSKCGDIRRIIMGLDRFKKTPCGFCFVEYYSRDDAEDALRYISGTRLDDRPIRIDWD 113 (153)
T ss_pred hhcceEEEeeeeeeecHHHHHHHHHhccchheeEeccccCCcCccceEEEEEecchhHHHHHHHhccCcccccceeeecc
Confidence 45789999999999999999999999999999999999999999999999999999999999999999999999999886
Q ss_pred CCC
Q 021295 134 EPK 136 (314)
Q Consensus 134 ~~~ 136 (314)
.--
T Consensus 114 ~GF 116 (153)
T KOG0121|consen 114 AGF 116 (153)
T ss_pred ccc
Confidence 543
No 37
>KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only]
Probab=99.64 E-value=6.6e-16 Score=136.07 Aligned_cols=83 Identities=25% Similarity=0.496 Sum_probs=76.8
Q ss_pred CCCCcceEEEcCCCCCCCHHHHHHHHhccCCeEEEEEeecCCCCCcceEEEEEeCChHHHHHHHHhcCCeeeCCeEEEEe
Q 021295 52 KDFKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVK 131 (314)
Q Consensus 52 ~~~~~~~l~V~nLp~~~~e~~l~~~F~~~G~v~~v~i~~~~~~g~~rG~afV~F~~~~~a~~a~~~l~~~~~~gr~l~V~ 131 (314)
.....++|+|+|||+...|.||+.+|++||+|.+|+|+.+. .-+|||.||+|+++++|++|-++||+..|.+|+|+|.
T Consensus 92 s~~~pkRLhVSNIPFrFRdpDL~aMF~kfG~VldVEIIfNE--RGSKGFGFVTmen~~dadRARa~LHgt~VEGRkIEVn 169 (376)
T KOG0125|consen 92 SKDTPKRLHVSNIPFRFRDPDLRAMFEKFGKVLDVEIIFNE--RGSKGFGFVTMENPADADRARAELHGTVVEGRKIEVN 169 (376)
T ss_pred CCCCCceeEeecCCccccCccHHHHHHhhCceeeEEEEecc--CCCCccceEEecChhhHHHHHHHhhcceeeceEEEEe
Confidence 44567899999999999999999999999999999999873 3489999999999999999999999999999999999
Q ss_pred ecCCC
Q 021295 132 KAEPK 136 (314)
Q Consensus 132 ~a~~~ 136 (314)
.|+.+
T Consensus 170 ~ATar 174 (376)
T KOG0125|consen 170 NATAR 174 (376)
T ss_pred ccchh
Confidence 98765
No 38
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=99.63 E-value=1e-15 Score=123.92 Aligned_cols=77 Identities=19% Similarity=0.493 Sum_probs=72.1
Q ss_pred CcceEEEcCCCCCCCHHHHHHHHhccCCeEEEEEeecCCCCCcceEEEEEeCChHHHHHHHHhcCCeeeCCeEEEEeecC
Q 021295 55 KTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVKKAE 134 (314)
Q Consensus 55 ~~~~l~V~nLp~~~~e~~l~~~F~~~G~v~~v~i~~~~~~g~~rG~afV~F~~~~~a~~a~~~l~~~~~~gr~l~V~~a~ 134 (314)
-.++|||+||+..+++.||+.+|.+||+|..|+|.++ +.|||||||+++.+|+.|+..|++..|++..|.|++.+
T Consensus 9 ~~~kVYVGnL~~~a~k~eLE~~F~~yG~lrsvWvArn-----PPGfAFVEFed~RDA~DAvr~LDG~~~cG~r~rVE~S~ 83 (195)
T KOG0107|consen 9 GNTKVYVGNLGSRATKRELERAFSKYGPLRSVWVARN-----PPGFAFVEFEDPRDAEDAVRYLDGKDICGSRIRVELST 83 (195)
T ss_pred CCceEEeccCCCCcchHHHHHHHHhcCcceeEEEeec-----CCCceEEeccCcccHHHHHhhcCCccccCceEEEEeec
Confidence 4689999999999999999999999999999999986 46899999999999999999999999999999999877
Q ss_pred CC
Q 021295 135 PK 136 (314)
Q Consensus 135 ~~ 136 (314)
-+
T Consensus 84 G~ 85 (195)
T KOG0107|consen 84 GR 85 (195)
T ss_pred CC
Confidence 54
No 39
>PLN03120 nucleic acid binding protein; Provisional
Probab=99.63 E-value=2.6e-15 Score=131.06 Aligned_cols=79 Identities=18% Similarity=0.332 Sum_probs=72.9
Q ss_pred cceEEEcCCCCCCCHHHHHHHHhccCCeEEEEEeecCCCCCcceEEEEEeCChHHHHHHHHhcCCeeeCCeEEEEeecCC
Q 021295 56 TKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVKKAEP 135 (314)
Q Consensus 56 ~~~l~V~nLp~~~~e~~l~~~F~~~G~v~~v~i~~~~~~g~~rG~afV~F~~~~~a~~a~~~l~~~~~~gr~l~V~~a~~ 135 (314)
.++|||+|||+.++|++|+++|+.||+|++|+|++++. +++||||+|+++++|++||. |++..|.+++|+|.++..
T Consensus 4 ~rtVfVgNLs~~tTE~dLrefFS~~G~I~~V~I~~d~~---~~GfAFVtF~d~eaAe~All-LnG~~l~gr~V~Vt~a~~ 79 (260)
T PLN03120 4 VRTVKVSNVSLKATERDIKEFFSFSGDIEYVEMQSENE---RSQIAYVTFKDPQGAETALL-LSGATIVDQSVTITPAED 79 (260)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCC---CCCEEEEEeCcHHHHHHHHH-hcCCeeCCceEEEEeccC
Confidence 57999999999999999999999999999999998864 47899999999999999995 899999999999999886
Q ss_pred CCC
Q 021295 136 KKP 138 (314)
Q Consensus 136 ~~~ 138 (314)
...
T Consensus 80 ~~~ 82 (260)
T PLN03120 80 YQL 82 (260)
T ss_pred CCC
Confidence 543
No 40
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.62 E-value=2.6e-15 Score=106.99 Aligned_cols=70 Identities=27% Similarity=0.693 Sum_probs=65.1
Q ss_pred EEEcCCCCCCCHHHHHHHHhccCCeEEEEEeecCCCCCcceEEEEEeCChHHHHHHHHhcCCeeeCCeEEE
Q 021295 59 IFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVE 129 (314)
Q Consensus 59 l~V~nLp~~~~e~~l~~~F~~~G~v~~v~i~~~~~~g~~rG~afV~F~~~~~a~~a~~~l~~~~~~gr~l~ 129 (314)
|||.|||+++++++|+++|+.++.|..|.++.+++ ++++++|||+|.++++|++|++.+++..|+++.|+
T Consensus 1 v~i~nlp~~~~~~~l~~~f~~~g~v~~v~~~~~~~-~~~~~~a~v~f~~~~~a~~al~~~~~~~~~g~~l~ 70 (70)
T PF14259_consen 1 VYISNLPPSTTEEDLRNFFSRFGPVEKVRLIKNKD-GQSRGFAFVEFSSEEDAKRALELLNGKEIDGRKLR 70 (70)
T ss_dssp EEEESSTTT--HHHHHHHCTTSSBEEEEEEEESTT-SSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CEEeCCCCCCCHHHHHHHHHhcCCcceEEEEeeec-cccCCEEEEEeCCHHHHHHHHHHCCCcEECCEEcC
Confidence 79999999999999999999999999999999976 88999999999999999999999999999999885
No 41
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.59 E-value=1.3e-15 Score=148.59 Aligned_cols=82 Identities=23% Similarity=0.454 Sum_probs=77.4
Q ss_pred CCcceEEEcCCCCCCCHHHHHHHHhccCCeEEEEEeecCCCCCcceEEEEEeCChHHHHHHHHhcCCeeeCCeEEEEeec
Q 021295 54 FKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVKKA 133 (314)
Q Consensus 54 ~~~~~l~V~nLp~~~~e~~l~~~F~~~G~v~~v~i~~~~~~g~~rG~afV~F~~~~~a~~a~~~l~~~~~~gr~l~V~~a 133 (314)
...++|||+|||++++|++|+++|++||+|++|+|+.|+.+++++|||||+|+++++|++||+.||+..|.+++|+|.+.
T Consensus 105 ~~~~rLfVGnLp~~~tEe~Lr~lF~~fG~I~sV~I~~D~~TgkskGfAFVeF~s~e~A~~Ai~~lnG~~i~GR~IkV~rp 184 (612)
T TIGR01645 105 AIMCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRP 184 (612)
T ss_pred cCCCEEEEcCCCCCCCHHHHHHHHHccCCEEEEEEeecCCCCCcCCeEEEEeCcHHHHHHHHHhcCCeEEecceeeeccc
Confidence 35679999999999999999999999999999999999999999999999999999999999999999999999999865
Q ss_pred CC
Q 021295 134 EP 135 (314)
Q Consensus 134 ~~ 135 (314)
..
T Consensus 185 ~~ 186 (612)
T TIGR01645 185 SN 186 (612)
T ss_pred cc
Confidence 43
No 42
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=99.59 E-value=7e-15 Score=136.02 Aligned_cols=132 Identities=19% Similarity=0.357 Sum_probs=107.2
Q ss_pred CCCCCCcccEEEEEECCHHHHHHHHH-ccCccCCcEEEEeecCCCCCCCC-------CCCCcceEEEcCCCCCCCHHHHH
Q 021295 3 DRKTGQPRGFGFVTYADPSVVDKVIE-DTHIINGKQVEIKRTIPKGAVGS-------KDFKTKKIFVGGIPSSVNEDEFK 74 (314)
Q Consensus 3 d~~tg~~kG~aFV~f~~~~~a~~A~~-~~~~i~g~~i~v~~~~~~~~~~~-------~~~~~~~l~V~nLp~~~~e~~l~ 74 (314)
.+.|+++.|-|||||++++++++||+ +-..+..+.|+|-.+..++.... .......|-|..||+.|||+||.
T Consensus 42 ~r~~Gr~sGeA~Ve~~seedv~~AlkkdR~~mg~RYIEVf~~~~~e~d~~~~~~g~~s~~~d~vVRLRGLPfscte~dI~ 121 (510)
T KOG4211|consen 42 PRRNGRPSGEAYVEFTSEEDVEKALKKDRESMGHRYIEVFTAGGAEADWVMRPGGPNSSANDGVVRLRGLPFSCTEEDIV 121 (510)
T ss_pred eccCCCcCcceEEEeechHHHHHHHHhhHHHhCCceEEEEccCCccccccccCCCCCCCCCCceEEecCCCccCcHHHHH
Confidence 45689999999999999999999999 44577888899977755543222 12355689999999999999999
Q ss_pred HHHhccCCeEE-EEEeecCCCCCcceEEEEEeCChHHHHHHHHhcCCeeeCCeEEEEeecCCC
Q 021295 75 DFFMQFGDVQE-HQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVKKAEPK 136 (314)
Q Consensus 75 ~~F~~~G~v~~-v~i~~~~~~g~~rG~afV~F~~~~~a~~a~~~l~~~~~~gr~l~V~~a~~~ 136 (314)
+||+-.-.|.. |.++.+ ..+++.+-|||.|++.+.|++||.+ |...|..+-|+|..+...
T Consensus 122 ~FFaGL~Iv~~gi~l~~d-~rgR~tGEAfVqF~sqe~ae~Al~r-hre~iGhRYIEvF~Ss~~ 182 (510)
T KOG4211|consen 122 EFFAGLEIVPDGILLPMD-QRGRPTGEAFVQFESQESAEIALGR-HRENIGHRYIEVFRSSRA 182 (510)
T ss_pred HHhcCCcccccceeeecc-CCCCcccceEEEecCHHHHHHHHHH-HHHhhccceEEeehhHHH
Confidence 99998866655 445555 4567999999999999999999999 888899999999766543
No 43
>KOG4207 consensus Predicted splicing factor, SR protein superfamily [RNA processing and modification]
Probab=99.59 E-value=2.4e-15 Score=124.65 Aligned_cols=86 Identities=26% Similarity=0.434 Sum_probs=81.0
Q ss_pred CCCcceEEEcCCCCCCCHHHHHHHHhccCCeEEEEEeecCCCCCcceEEEEEeCChHHHHHHHHhcCCeeeCCeEEEEee
Q 021295 53 DFKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVKK 132 (314)
Q Consensus 53 ~~~~~~l~V~nLp~~~~e~~l~~~F~~~G~v~~v~i~~~~~~g~~rG~afV~F~~~~~a~~a~~~l~~~~~~gr~l~V~~ 132 (314)
..-..+|.|.||.+-|+.++|+.+|++||.|.+|.|++|+.|.++++||||.|.+..+|++|+++|++.+|+++.|.|+.
T Consensus 10 v~gm~SLkVdNLTyRTspd~LrrvFekYG~vgDVyIPrdr~Tr~sRgFaFVrf~~k~daedA~damDG~~ldgRelrVq~ 89 (256)
T KOG4207|consen 10 VEGMTSLKVDNLTYRTSPDDLRRVFEKYGRVGDVYIPRDRYTRQSRGFAFVRFHDKRDAEDALDAMDGAVLDGRELRVQM 89 (256)
T ss_pred cccceeEEecceeccCCHHHHHHHHHHhCcccceecccccccccccceeEEEeeecchHHHHHHhhcceeeccceeeehh
Confidence 34567899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCC
Q 021295 133 AEPKKP 138 (314)
Q Consensus 133 a~~~~~ 138 (314)
|+-..+
T Consensus 90 arygr~ 95 (256)
T KOG4207|consen 90 ARYGRP 95 (256)
T ss_pred hhcCCC
Confidence 886654
No 44
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.58 E-value=7.3e-15 Score=126.45 Aligned_cols=101 Identities=20% Similarity=0.493 Sum_probs=86.2
Q ss_pred EEEEeecCCCCCCCCCCC-CcceEEEcCCCCCCCHHHHHHHHhccCCeEEEEEeecCCCCCcceEEEEEeCChHHHHHHH
Q 021295 37 QVEIKRTIPKGAVGSKDF-KTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLL 115 (314)
Q Consensus 37 ~i~v~~~~~~~~~~~~~~-~~~~l~V~nLp~~~~e~~l~~~F~~~G~v~~v~i~~~~~~g~~rG~afV~F~~~~~a~~a~ 115 (314)
.|+|.++......+.++. .-..|||+.|..+++.|+|++.|.+||+|.+++|++|..|.++|||+||.|.+.++|+.||
T Consensus 42 e~~v~wa~~p~nQsk~t~~~hfhvfvgdls~eI~~e~lr~aF~pFGevS~akvirD~~T~KsKGYgFVSf~~k~dAEnAI 121 (321)
T KOG0148|consen 42 ELKVNWATAPGNQSKPTSNQHFHVFVGDLSPEIDNEKLREAFAPFGEVSDAKVIRDMNTGKSKGYGFVSFPNKEDAENAI 121 (321)
T ss_pred hhccccccCcccCCCCccccceeEEehhcchhcchHHHHHHhccccccccceEeecccCCcccceeEEeccchHHHHHHH
Confidence 344445544422222222 2457999999999999999999999999999999999999999999999999999999999
Q ss_pred HhcCCeeeCCeEEEEeecCCCC
Q 021295 116 AKGNKLELAGAQVEVKKAEPKK 137 (314)
Q Consensus 116 ~~l~~~~~~gr~l~V~~a~~~~ 137 (314)
+.||+.+|..|.|+..||..|.
T Consensus 122 ~~MnGqWlG~R~IRTNWATRKp 143 (321)
T KOG0148|consen 122 QQMNGQWLGRRTIRTNWATRKP 143 (321)
T ss_pred HHhCCeeeccceeeccccccCc
Confidence 9999999999999999999876
No 45
>KOG0130 consensus RNA-binding protein RBM8/Tsunagi (RRM superfamily) [General function prediction only]
Probab=99.56 E-value=1.1e-14 Score=112.99 Aligned_cols=88 Identities=23% Similarity=0.429 Sum_probs=82.3
Q ss_pred CCCCcceEEEcCCCCCCCHHHHHHHHhccCCeEEEEEeecCCCCCcceEEEEEeCChHHHHHHHHhcCCeeeCCeEEEEe
Q 021295 52 KDFKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVK 131 (314)
Q Consensus 52 ~~~~~~~l~V~nLp~~~~e~~l~~~F~~~G~v~~v~i~~~~~~g~~rG~afV~F~~~~~a~~a~~~l~~~~~~gr~l~V~ 131 (314)
....-..|||.++..+++|++|.+.|..||+|+.|.|..|+.|+-.||||+|+|++.+.|++||+.||+.+|.+++|.|.
T Consensus 68 rSVEGwIi~VtgvHeEatEedi~d~F~dyGeiKNihLNLDRRtGy~KGYaLvEYet~keAq~A~~~~Ng~~ll~q~v~VD 147 (170)
T KOG0130|consen 68 RSVEGWIIFVTGVHEEATEEDIHDKFADYGEIKNIHLNLDRRTGYVKGYALVEYETLKEAQAAIDALNGAELLGQNVSVD 147 (170)
T ss_pred cceeeEEEEEeccCcchhHHHHHHHHhhcccccceeeccccccccccceeeeehHhHHHHHHHHHhccchhhhCCceeEE
Confidence 34456789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCCCCCC
Q 021295 132 KAEPKKPN 139 (314)
Q Consensus 132 ~a~~~~~~ 139 (314)
||-.+.+.
T Consensus 148 w~Fv~gp~ 155 (170)
T KOG0130|consen 148 WCFVKGPE 155 (170)
T ss_pred EEEecCCc
Confidence 99876554
No 46
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=99.55 E-value=2.4e-14 Score=116.89 Aligned_cols=78 Identities=21% Similarity=0.558 Sum_probs=70.7
Q ss_pred CcceEEEcCCCCCCCHHHHHHHHhccCCeEEEEEeecCCCCCcceEEEEEeCChHHHHHHHHhcCCeeeCCeEEEEeecC
Q 021295 55 KTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVKKAE 134 (314)
Q Consensus 55 ~~~~l~V~nLp~~~~e~~l~~~F~~~G~v~~v~i~~~~~~g~~rG~afV~F~~~~~a~~a~~~l~~~~~~gr~l~V~~a~ 134 (314)
.+++|||+|||.++.|.||+++|.||+.|.+|+|...+ .+-.||||+|+++.+|+.||..-++..++++.|+|+++.
T Consensus 5 ~~~~iyvGNLP~diRekeieDlFyKyg~i~~ieLK~r~---g~ppfafVeFEd~RDAeDAiygRdGYdydg~rLRVEfpr 81 (241)
T KOG0105|consen 5 NSRRIYVGNLPGDIREKEIEDLFYKYGRIREIELKNRP---GPPPFAFVEFEDPRDAEDAIYGRDGYDYDGCRLRVEFPR 81 (241)
T ss_pred ccceEEecCCCcchhhccHHHHHhhhcceEEEEeccCC---CCCCeeEEEecCccchhhhhhcccccccCcceEEEEecc
Confidence 46899999999999999999999999999999986443 346699999999999999999999999999999999876
Q ss_pred C
Q 021295 135 P 135 (314)
Q Consensus 135 ~ 135 (314)
.
T Consensus 82 g 82 (241)
T KOG0105|consen 82 G 82 (241)
T ss_pred C
Confidence 4
No 47
>PLN03213 repressor of silencing 3; Provisional
Probab=99.55 E-value=2e-14 Score=132.78 Aligned_cols=81 Identities=22% Similarity=0.446 Sum_probs=74.1
Q ss_pred CCCCcceEEEcCCCCCCCHHHHHHHHhccCCeEEEEEeecCCCCCcceEEEEEeCCh--HHHHHHHHhcCCeeeCCeEEE
Q 021295 52 KDFKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTE--QAVDDLLAKGNKLELAGAQVE 129 (314)
Q Consensus 52 ~~~~~~~l~V~nLp~~~~e~~l~~~F~~~G~v~~v~i~~~~~~g~~rG~afV~F~~~--~~a~~a~~~l~~~~~~gr~l~ 129 (314)
......+|||+||+++++++||+++|++||.|++|.|+ +.|+ |+||||+|.+. +++++||+.||+..+.++.|+
T Consensus 6 s~~~gMRIYVGNLSydVTEDDLravFSeFGsVkdVEIp--RETG--RGFAFVEMssdddaEeeKAISaLNGAEWKGR~LK 81 (759)
T PLN03213 6 SGGGGVRLHVGGLGESVGRDDLLKIFSPMGTVDAVEFV--RTKG--RSFAYIDFSPSSTNSLTKLFSTYNGCVWKGGRLR 81 (759)
T ss_pred cCCcceEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEe--cccC--CceEEEEecCCcHHHHHHHHHHhcCCeecCceeE
Confidence 34456899999999999999999999999999999999 5566 99999999987 789999999999999999999
Q ss_pred EeecCCC
Q 021295 130 VKKAEPK 136 (314)
Q Consensus 130 V~~a~~~ 136 (314)
|..|++.
T Consensus 82 VNKAKP~ 88 (759)
T PLN03213 82 LEKAKEH 88 (759)
T ss_pred EeeccHH
Confidence 9988874
No 48
>PLN03121 nucleic acid binding protein; Provisional
Probab=99.54 E-value=4.9e-14 Score=121.22 Aligned_cols=80 Identities=15% Similarity=0.237 Sum_probs=71.9
Q ss_pred CcceEEEcCCCCCCCHHHHHHHHhccCCeEEEEEeecCCCCCcceEEEEEeCChHHHHHHHHhcCCeeeCCeEEEEeecC
Q 021295 55 KTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVKKAE 134 (314)
Q Consensus 55 ~~~~l~V~nLp~~~~e~~l~~~F~~~G~v~~v~i~~~~~~g~~rG~afV~F~~~~~a~~a~~~l~~~~~~gr~l~V~~a~ 134 (314)
...+|||.||++.+||++|++||+.||+|++|+|++|.. .++||||+|+++++++.|| .|++..|.+++|+|..+.
T Consensus 4 ~g~TV~V~NLS~~tTE~dLrefFS~~G~I~~V~I~~D~e---t~gfAfVtF~d~~aaetAl-lLnGa~l~d~~I~It~~~ 79 (243)
T PLN03121 4 GGYTAEVTNLSPKATEKDVYDFFSHCGAIEHVEIIRSGE---YACTAYVTFKDAYALETAV-LLSGATIVDQRVCITRWG 79 (243)
T ss_pred CceEEEEecCCCCCCHHHHHHHHHhcCCeEEEEEecCCC---cceEEEEEECCHHHHHHHH-hcCCCeeCCceEEEEeCc
Confidence 457999999999999999999999999999999998853 4579999999999999999 569999999999999877
Q ss_pred CCCC
Q 021295 135 PKKP 138 (314)
Q Consensus 135 ~~~~ 138 (314)
....
T Consensus 80 ~y~~ 83 (243)
T PLN03121 80 QYED 83 (243)
T ss_pred cccc
Confidence 5543
No 49
>smart00362 RRM_2 RNA recognition motif.
Probab=99.54 E-value=5.6e-14 Score=99.13 Aligned_cols=72 Identities=31% Similarity=0.721 Sum_probs=67.4
Q ss_pred eEEEcCCCCCCCHHHHHHHHhccCCeEEEEEeecCCCCCcceEEEEEeCChHHHHHHHHhcCCeeeCCeEEEEe
Q 021295 58 KIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVK 131 (314)
Q Consensus 58 ~l~V~nLp~~~~e~~l~~~F~~~G~v~~v~i~~~~~~g~~rG~afV~F~~~~~a~~a~~~l~~~~~~gr~l~V~ 131 (314)
+|||.+||.++++++|+++|+++++|+.+.++.++ +.++++|||+|.++++|++|++.+++..+.+++|+|+
T Consensus 1 ~v~i~~l~~~~~~~~l~~~~~~~g~v~~~~~~~~~--~~~~~~~~v~f~~~~~a~~a~~~~~~~~~~~~~i~v~ 72 (72)
T smart00362 1 TLFVGNLPPDVTEEDLKELFSKFGPIESVKIPKDT--GKSKGFAFVEFESEEDAEKAIEALNGTKLGGRPLRVE 72 (72)
T ss_pred CEEEcCCCCcCCHHHHHHHHHhcCCEEEEEEecCC--CCCCceEEEEeCCHHHHHHHHHHhCCcEECCEEEeeC
Confidence 58999999999999999999999999999999876 6788999999999999999999999999999999874
No 50
>KOG0126 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.54 E-value=8e-16 Score=125.12 Aligned_cols=83 Identities=22% Similarity=0.524 Sum_probs=77.8
Q ss_pred CCcceEEEcCCCCCCCHHHHHHHHhccCCeEEEEEeecCCCCCcceEEEEEeCChHHHHHHHHhcCCeeeCCeEEEEeec
Q 021295 54 FKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVKKA 133 (314)
Q Consensus 54 ~~~~~l~V~nLp~~~~e~~l~~~F~~~G~v~~v~i~~~~~~g~~rG~afV~F~~~~~a~~a~~~l~~~~~~gr~l~V~~a 133 (314)
.++.-|||++||+++||.||..+|++||+|++|.|++|..|++++||||+.|++..+.--|+..||++.|.+|.|+|...
T Consensus 33 kdsA~Iyiggl~~~LtEgDil~VFSqyGe~vdinLiRDk~TGKSKGFaFLcYEDQRSTILAVDN~NGiki~gRtirVDHv 112 (219)
T KOG0126|consen 33 KDSAYIYIGGLPYELTEGDILCVFSQYGEIVDINLIRDKKTGKSKGFAFLCYEDQRSTILAVDNLNGIKILGRTIRVDHV 112 (219)
T ss_pred ccceEEEECCCcccccCCcEEEEeeccCceEEEEEEecCCCCcccceEEEEecCccceEEEEeccCCceecceeEEeeec
Confidence 45678999999999999999999999999999999999999999999999999999999999999999999999999865
Q ss_pred CCC
Q 021295 134 EPK 136 (314)
Q Consensus 134 ~~~ 136 (314)
...
T Consensus 113 ~~Y 115 (219)
T KOG0126|consen 113 SNY 115 (219)
T ss_pred ccc
Confidence 544
No 51
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.53 E-value=7.8e-15 Score=122.73 Aligned_cols=87 Identities=30% Similarity=0.593 Sum_probs=82.5
Q ss_pred CCCcceEEEcCCCCCCCHHHHHHHHhccCCeEEEEEeecCCCCCcceEEEEEeCChHHHHHHHHhcCCeeeCCeEEEEee
Q 021295 53 DFKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVKK 132 (314)
Q Consensus 53 ~~~~~~l~V~nLp~~~~e~~l~~~F~~~G~v~~v~i~~~~~~g~~rG~afV~F~~~~~a~~a~~~l~~~~~~gr~l~V~~ 132 (314)
..+.++|||+.|..+++|..|...|-.||.|++|.|+.|.++.++|+|+||||+..|+|.+||..||..+|.+|.|+|.+
T Consensus 7 a~~KrtlYVGGladeVtekvLhaAFIPFGDI~dIqiPlDyesqkHRgFgFVefe~aEDAaaAiDNMnesEL~GrtirVN~ 86 (298)
T KOG0111|consen 7 ANQKRTLYVGGLADEVTEKVLHAAFIPFGDIKDIQIPLDYESQKHRGFGFVEFEEAEDAAAAIDNMNESELFGRTIRVNL 86 (298)
T ss_pred cccceeEEeccchHHHHHHHHHhccccccchhhcccccchhcccccceeEEEeeccchhHHHhhcCchhhhcceeEEEee
Confidence 34568999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCC
Q 021295 133 AEPKKPN 139 (314)
Q Consensus 133 a~~~~~~ 139 (314)
|+|.+..
T Consensus 87 AkP~kik 93 (298)
T KOG0111|consen 87 AKPEKIK 93 (298)
T ss_pred cCCcccc
Confidence 9987653
No 52
>smart00360 RRM RNA recognition motif.
Probab=99.52 E-value=7.6e-14 Score=98.02 Aligned_cols=71 Identities=35% Similarity=0.755 Sum_probs=67.1
Q ss_pred EcCCCCCCCHHHHHHHHhccCCeEEEEEeecCCCCCcceEEEEEeCChHHHHHHHHhcCCeeeCCeEEEEe
Q 021295 61 VGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVK 131 (314)
Q Consensus 61 V~nLp~~~~e~~l~~~F~~~G~v~~v~i~~~~~~g~~rG~afV~F~~~~~a~~a~~~l~~~~~~gr~l~V~ 131 (314)
|.|||+++++++|+++|++||.|+.+.|+.++.+.+++++|||+|.+.++|++|++.+++..+.++.|.|+
T Consensus 1 i~~l~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~~~~~~~~~~~~~v~ 71 (71)
T smart00360 1 VGNLPPDVTEEELRELFSKFGKIESVRLVRDKDTGKSKGFAFVEFESEEDAEKALEALNGKELDGRPLKVK 71 (71)
T ss_pred CCCCCcccCHHHHHHHHHhhCCEeEEEEEeCCCCCCCCceEEEEeCCHHHHHHHHHHcCCCeeCCcEEEeC
Confidence 57999999999999999999999999999988888999999999999999999999999999999998874
No 53
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=99.51 E-value=6e-14 Score=120.61 Aligned_cols=85 Identities=22% Similarity=0.508 Sum_probs=80.1
Q ss_pred cceEEEcCCCCCCCHHHHHHHHhccCCeEEEEEeecCCCCCcceEEEEEeCChHHHHHHHHhcCCeeeCCeEEEEeecCC
Q 021295 56 TKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVKKAEP 135 (314)
Q Consensus 56 ~~~l~V~nLp~~~~e~~l~~~F~~~G~v~~v~i~~~~~~g~~rG~afV~F~~~~~a~~a~~~l~~~~~~gr~l~V~~a~~ 135 (314)
-+.|||-.||.+..+.||.+.|..||.|++.+|..|+.|+++|.|.||.|+++.++++||..||++.|.=++|+|...++
T Consensus 285 GCNlFIYHLPQEFgDaEliQmF~PFGhivSaKVFvDRATNQSKCFGFVSfDNp~SaQaAIqAMNGFQIGMKRLKVQLKRP 364 (371)
T KOG0146|consen 285 GCNLFIYHLPQEFGDAELIQMFLPFGHIVSAKVFVDRATNQSKCFGFVSFDNPASAQAAIQAMNGFQIGMKRLKVQLKRP 364 (371)
T ss_pred cceEEEEeCchhhccHHHHHHhccccceeeeeeeehhccccccceeeEecCCchhHHHHHHHhcchhhhhhhhhhhhcCc
Confidence 35899999999999999999999999999999999999999999999999999999999999999999999999998888
Q ss_pred CCCCC
Q 021295 136 KKPNL 140 (314)
Q Consensus 136 ~~~~~ 140 (314)
+..+.
T Consensus 365 kdanR 369 (371)
T KOG0146|consen 365 KDANR 369 (371)
T ss_pred cccCC
Confidence 76543
No 54
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.50 E-value=6.2e-14 Score=130.63 Aligned_cols=136 Identities=23% Similarity=0.522 Sum_probs=114.3
Q ss_pred CCCCCCcccEEEEEECCHHHHHHHHHcc--CccCCcEEEEeecCCCCCC--------------CCCCCCcceEEEcCCCC
Q 021295 3 DRKTGQPRGFGFVTYADPSVVDKVIEDT--HIINGKQVEIKRTIPKGAV--------------GSKDFKTKKIFVGGIPS 66 (314)
Q Consensus 3 d~~tg~~kG~aFV~f~~~~~a~~A~~~~--~~i~g~~i~v~~~~~~~~~--------------~~~~~~~~~l~V~nLp~ 66 (314)
...++++++|+||+|+++++|..|++.+ ..+..+.+.|..+..+... .........|||.||+.
T Consensus 201 ~~~~g~~~~~gfv~f~~~e~a~~av~~l~~~~~~~~~~~V~~aqkk~e~~~~l~~~~~~~~~~~~~~~~~~nl~vknld~ 280 (369)
T KOG0123|consen 201 RDSIGKSKGFGFVNFENPEDAKKAVETLNGKIFGDKELYVGRAQKKSEREAELKRKFEQEFAKRSVSLQGANLYVKNLDE 280 (369)
T ss_pred ecCCCCCCCccceeecChhHHHHHHHhccCCcCCccceeecccccchhhHHHHhhhhHhhhhhccccccccccccccCcc
Confidence 3457789999999999999999999944 4666677777766553111 11245667999999999
Q ss_pred CCCHHHHHHHHhccCCeEEEEEeecCCCCCcceEEEEEeCChHHHHHHHHhcCCeeeCCeEEEEeecCCCCCC
Q 021295 67 SVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVKKAEPKKPN 139 (314)
Q Consensus 67 ~~~e~~l~~~F~~~G~v~~v~i~~~~~~g~~rG~afV~F~~~~~a~~a~~~l~~~~~~gr~l~V~~a~~~~~~ 139 (314)
.++++.|+++|+.+++|..++|+.+ ..+++++|+||+|+++++|.+|+..+|+..+.+++|.|.++..++..
T Consensus 281 ~~~~e~L~~~f~~~GeI~s~kv~~~-~~g~skG~gfV~fs~~eeA~~A~~~~n~~~i~~k~l~vav~qr~~~r 352 (369)
T KOG0123|consen 281 TLSDEKLRKIFSSFGEITSAKVMVD-ENGKSKGFGFVEFSSPEEAKKAMTEMNGRLIGGKPLYVAVAQRKEDR 352 (369)
T ss_pred ccchhHHHHHHhcccceeeEEEEec-cCCCccceEEEEcCCHHHHHHHHHhhChhhhcCCchhhhHHhhhccc
Confidence 9999999999999999999999998 57889999999999999999999999999999999999988855433
No 55
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=99.50 E-value=5.3e-14 Score=128.11 Aligned_cols=88 Identities=30% Similarity=0.576 Sum_probs=79.2
Q ss_pred CCCCcceEEEcCCCCCCCHHHHHHHHhccCCeEEEEEeecCCCCCcceEEEEEeCChHHHHHHHHhcCCee-eCC--eEE
Q 021295 52 KDFKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLE-LAG--AQV 128 (314)
Q Consensus 52 ~~~~~~~l~V~nLp~~~~e~~l~~~F~~~G~v~~v~i~~~~~~g~~rG~afV~F~~~~~a~~a~~~l~~~~-~~g--r~l 128 (314)
.+.+.-+|||+-||..++|.||+++|++||.|.+|.|++|+.|+.+++||||+|.+.++|.+|+.+||++. |.+ ++|
T Consensus 30 ~d~~~vKlfVgqIprt~sE~dlr~lFe~yg~V~einl~kDk~t~~s~gcCFv~~~trk~a~~a~~Alhn~ktlpG~~~pv 109 (510)
T KOG0144|consen 30 PDGSAVKLFVGQIPRTASEKDLRELFEKYGNVYEINLIKDKSTGQSKGCCFVKYYTRKEADEAINALHNQKTLPGMHHPV 109 (510)
T ss_pred CCchhhhheeccCCccccHHHHHHHHHHhCceeEEEeecccccCcccceEEEEeccHHHHHHHHHHhhcccccCCCCcce
Confidence 44567799999999999999999999999999999999999999999999999999999999999997754 444 889
Q ss_pred EEeecCCCCCC
Q 021295 129 EVKKAEPKKPN 139 (314)
Q Consensus 129 ~V~~a~~~~~~ 139 (314)
.|++|..++++
T Consensus 110 qvk~Ad~E~er 120 (510)
T KOG0144|consen 110 QVKYADGERER 120 (510)
T ss_pred eecccchhhhc
Confidence 99998877654
No 56
>KOG0114 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.49 E-value=1.9e-13 Score=101.37 Aligned_cols=82 Identities=15% Similarity=0.322 Sum_probs=74.5
Q ss_pred CCCCcceEEEcCCCCCCCHHHHHHHHhccCCeEEEEEeecCCCCCcceEEEEEeCChHHHHHHHHhcCCeeeCCeEEEEe
Q 021295 52 KDFKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVK 131 (314)
Q Consensus 52 ~~~~~~~l~V~nLp~~~~e~~l~~~F~~~G~v~~v~i~~~~~~g~~rG~afV~F~~~~~a~~a~~~l~~~~~~gr~l~V~ 131 (314)
..+.++.|||.|||+++|.|++.++|.+||.|..|+|-.+++| +|.|||.|++..+|++|++.|++..++++.|.|-
T Consensus 14 ppevnriLyirNLp~~ITseemydlFGkyg~IrQIRiG~~k~T---rGTAFVVYedi~dAk~A~dhlsg~n~~~ryl~vl 90 (124)
T KOG0114|consen 14 PPEVNRILYIRNLPFKITSEEMYDLFGKYGTIRQIRIGNTKET---RGTAFVVYEDIFDAKKACDHLSGYNVDNRYLVVL 90 (124)
T ss_pred ChhhheeEEEecCCccccHHHHHHHhhcccceEEEEecCccCc---CceEEEEehHhhhHHHHHHHhcccccCCceEEEE
Confidence 4456789999999999999999999999999999999877654 8999999999999999999999999999999998
Q ss_pred ecCCC
Q 021295 132 KAEPK 136 (314)
Q Consensus 132 ~a~~~ 136 (314)
+..+.
T Consensus 91 yyq~~ 95 (124)
T KOG0114|consen 91 YYQPE 95 (124)
T ss_pred ecCHH
Confidence 76554
No 57
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=99.49 E-value=6.9e-14 Score=127.47 Aligned_cols=81 Identities=25% Similarity=0.494 Sum_probs=74.7
Q ss_pred CcceEEEcCCCCCCCHHHHHHHH-hccCCeEEEEEeecCCCCCcceEEEEEeCChHHHHHHHHhcCCeeeCCeEEEEeec
Q 021295 55 KTKKIFVGGIPSSVNEDEFKDFF-MQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVKKA 133 (314)
Q Consensus 55 ~~~~l~V~nLp~~~~e~~l~~~F-~~~G~v~~v~i~~~~~~g~~rG~afV~F~~~~~a~~a~~~l~~~~~~gr~l~V~~a 133 (314)
..+.+||.|||+++.|++||++| ++.|+|+.|.|+.| .++|+|+||+|||+++|.+++|+++||++++.+|+|+|+..
T Consensus 43 r~R~vfItNIpyd~rWqdLKdLvrekvGev~yveLl~D-~~GK~rGcavVEFk~~E~~qKa~E~lnk~~~~GR~l~vKEd 121 (608)
T KOG4212|consen 43 RDRSVFITNIPYDYRWQDLKDLVREKVGEVEYVELLFD-ESGKARGCAVVEFKDPENVQKALEKLNKYEVNGRELVVKED 121 (608)
T ss_pred ccceEEEecCcchhhhHhHHHHHHHhcCceEeeeeecc-cCCCcCCceEEEeeCHHHHHHHHHHhhhccccCceEEEecc
Confidence 34569999999999999999999 56799999999999 58999999999999999999999999999999999999876
Q ss_pred CCC
Q 021295 134 EPK 136 (314)
Q Consensus 134 ~~~ 136 (314)
...
T Consensus 122 ~d~ 124 (608)
T KOG4212|consen 122 HDE 124 (608)
T ss_pred Cch
Confidence 653
No 58
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=99.48 E-value=4.8e-14 Score=114.92 Aligned_cols=85 Identities=28% Similarity=0.503 Sum_probs=80.0
Q ss_pred CCcceEEEcCCCCCCCHHHHHHHHhccCCeEEEEEeecCCCCCcceEEEEEeCChHHHHHHHHhcCCeeeCCeEEEEeec
Q 021295 54 FKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVKKA 133 (314)
Q Consensus 54 ~~~~~l~V~nLp~~~~e~~l~~~F~~~G~v~~v~i~~~~~~g~~rG~afV~F~~~~~a~~a~~~l~~~~~~gr~l~V~~a 133 (314)
.+..+|||+||+..++++.|.++|-+.++|++|+|++|+.+.+.+|||||||.++|+|+-||+.||.+.|-+++|+|..+
T Consensus 7 nqd~tiyvgnld~kvs~~~l~EL~iqagpVv~i~iPkDrv~~~~qGygF~Ef~~eedadYAikiln~VkLYgrpIrv~ka 86 (203)
T KOG0131|consen 7 NQDATLYVGNLDEKVSEELLYELFIQAGPVVNLHIPKDRVTQKHQGYGFAEFRTEEDADYAIKILNMVKLYGRPIRVNKA 86 (203)
T ss_pred CCCceEEEecCCHHHHHHHHHHHHHhcCceeeeecchhhhcccccceeEEEEechhhhHHHHHHHHHHHhcCceeEEEec
Confidence 35679999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCCCC
Q 021295 134 EPKKP 138 (314)
Q Consensus 134 ~~~~~ 138 (314)
...+.
T Consensus 87 s~~~~ 91 (203)
T KOG0131|consen 87 SAHQK 91 (203)
T ss_pred ccccc
Confidence 84443
No 59
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=99.48 E-value=3.5e-13 Score=119.73 Aligned_cols=80 Identities=35% Similarity=0.767 Sum_probs=77.3
Q ss_pred cceEEEcCCCCCCCHHHHHHHHhccCCeEEEEEeecCCCCCcceEEEEEeCChHHHHHHHHhcCCeeeCCeEEEEeecCC
Q 021295 56 TKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVKKAEP 135 (314)
Q Consensus 56 ~~~l~V~nLp~~~~e~~l~~~F~~~G~v~~v~i~~~~~~g~~rG~afV~F~~~~~a~~a~~~l~~~~~~gr~l~V~~a~~ 135 (314)
..+|||+|||+++++++|+++|.+|+.|..|.|+.++.++++++||||+|.++++|..|++.++...|.+++|.|.++..
T Consensus 115 ~~~l~v~nL~~~~~~~~l~~~F~~~g~~~~~~~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~~~~~~~~~~~v~~~~~ 194 (306)
T COG0724 115 NNTLFVGNLPYDVTEEDLRELFKKFGPVKRVRLVRDRETGKSRGFAFVEFESEESAEKAIEELNGKELEGRPLRVQKAQP 194 (306)
T ss_pred CceEEEeCCCCCCCHHHHHHHHHhcCceeEEEeeeccccCccCceEEEEecCHHHHHHHHHHcCCCeECCceeEeecccc
Confidence 59999999999999999999999999999999999999999999999999999999999999999999999999999653
No 60
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=99.47 E-value=5.6e-13 Score=94.44 Aligned_cols=74 Identities=35% Similarity=0.740 Sum_probs=69.0
Q ss_pred eEEEcCCCCCCCHHHHHHHHhccCCeEEEEEeecCCCCCcceEEEEEeCChHHHHHHHHhcCCeeeCCeEEEEee
Q 021295 58 KIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVKK 132 (314)
Q Consensus 58 ~l~V~nLp~~~~e~~l~~~F~~~G~v~~v~i~~~~~~g~~rG~afV~F~~~~~a~~a~~~l~~~~~~gr~l~V~~ 132 (314)
+|+|.+||.++++++|+++|+.+++|+.+.++.++.+ +++++|||+|.++++|+.|++.++...+.++.|.|.+
T Consensus 1 ~i~i~~l~~~~~~~~i~~~~~~~g~i~~~~~~~~~~~-~~~~~~~v~f~s~~~a~~a~~~~~~~~~~~~~~~v~~ 74 (74)
T cd00590 1 TLFVGNLPPDVTEEDLRELFSKFGKVESVRIVRDKDT-KSKGFAFVEFEDEEDAEKALEALNGKELGGRPLRVEF 74 (74)
T ss_pred CEEEeCCCCccCHHHHHHHHHhcCCEEEEEEeeCCCC-CcceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEeC
Confidence 5899999999999999999999999999999988655 7789999999999999999999999999999998863
No 61
>KOG0108 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA15 [RNA processing and modification]
Probab=99.43 E-value=2.9e-13 Score=127.45 Aligned_cols=82 Identities=28% Similarity=0.539 Sum_probs=79.6
Q ss_pred ceEEEcCCCCCCCHHHHHHHHhccCCeEEEEEeecCCCCCcceEEEEEeCChHHHHHHHHhcCCeeeCCeEEEEeecCCC
Q 021295 57 KKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVKKAEPK 136 (314)
Q Consensus 57 ~~l~V~nLp~~~~e~~l~~~F~~~G~v~~v~i~~~~~~g~~rG~afV~F~~~~~a~~a~~~l~~~~~~gr~l~V~~a~~~ 136 (314)
++|||+|||++++|++|.++|++.+.|..++++.|++|+++|||+|++|++++++++|++.||..++.+++|+|.++...
T Consensus 19 ~~v~vgnip~~~se~~l~~~~~~~g~v~s~~~v~D~~tG~~~G~~f~~~~~~~~~~~a~~~lNg~~~~gr~l~v~~~~~~ 98 (435)
T KOG0108|consen 19 SSVFVGNIPYEGSEEQLLSIFSGVGPVLSFRLVYDRETGKPKGFGFCEFTDEETAERAIRNLNGAEFNGRKLRVNYASNR 98 (435)
T ss_pred cceEecCCCCcccHHHHHHHHhccCccceeeecccccCCCcCceeeEecCchhhHHHHHHhcCCcccCCceEEeeccccc
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999998876
Q ss_pred CC
Q 021295 137 KP 138 (314)
Q Consensus 137 ~~ 138 (314)
+.
T Consensus 99 ~~ 100 (435)
T KOG0108|consen 99 KN 100 (435)
T ss_pred ch
Confidence 54
No 62
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=99.39 E-value=4.1e-12 Score=103.92 Aligned_cols=113 Identities=19% Similarity=0.313 Sum_probs=93.3
Q ss_pred CCCcccEEEEEECCHHHHHHHHH--ccCccCCcEEEEeecCCCCCCC----------------------CCCCCcceEEE
Q 021295 6 TGQPRGFGFVTYADPSVVDKVIE--DTHIINGKQVEIKRTIPKGAVG----------------------SKDFKTKKIFV 61 (314)
Q Consensus 6 tg~~kG~aFV~f~~~~~a~~A~~--~~~~i~g~~i~v~~~~~~~~~~----------------------~~~~~~~~l~V 61 (314)
--..-.||||+|+++.+|+.||. +...+++..|.|+.+..-.... .......+|.|
T Consensus 41 r~g~ppfafVeFEd~RDAeDAiygRdGYdydg~rLRVEfprggr~s~~~~G~y~gggrgGgg~gg~rgppsrrSe~RVvV 120 (241)
T KOG0105|consen 41 RPGPPPFAFVEFEDPRDAEDAIYGRDGYDYDGCRLRVEFPRGGRSSSDRRGSYSGGGRGGGGGGGRRGPPSRRSEYRVVV 120 (241)
T ss_pred CCCCCCeeEEEecCccchhhhhhcccccccCcceEEEEeccCCCcccccccccCCCCCCCCCCCcccCCcccccceeEEE
Confidence 33456799999999999999998 7778999999998764332111 12234568999
Q ss_pred cCCCCCCCHHHHHHHHhccCCeEEEEEeecCCCCCcceEEEEEeCChHHHHHHHHhcCCeeeCC
Q 021295 62 GGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAG 125 (314)
Q Consensus 62 ~nLp~~~~e~~l~~~F~~~G~v~~v~i~~~~~~g~~rG~afV~F~~~~~a~~a~~~l~~~~~~g 125 (314)
..||.+.+|+|||+++.+.|+|+...|.+|- +..|+|...|+++-||.+|+...+..
T Consensus 121 sGLp~SgSWQDLKDHmReaGdvCfadv~rDg-------~GvV~~~r~eDMkYAvr~ld~~~~~s 177 (241)
T KOG0105|consen 121 SGLPPSGSWQDLKDHMREAGDVCFADVQRDG-------VGVVEYLRKEDMKYAVRKLDDQKFRS 177 (241)
T ss_pred ecCCCCCchHHHHHHHHhhCCeeeeeeeccc-------ceeeeeeehhhHHHHHHhhccccccC
Confidence 9999999999999999999999999998873 78999999999999999987766544
No 63
>smart00361 RRM_1 RNA recognition motif.
Probab=99.37 E-value=3.5e-12 Score=90.95 Aligned_cols=62 Identities=24% Similarity=0.418 Sum_probs=56.2
Q ss_pred HHHHHHHHh----ccCCeEEEE-EeecCCC--CCcceEEEEEeCChHHHHHHHHhcCCeeeCCeEEEEe
Q 021295 70 EDEFKDFFM----QFGDVQEHQ-IMRDHST--SRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVK 131 (314)
Q Consensus 70 e~~l~~~F~----~~G~v~~v~-i~~~~~~--g~~rG~afV~F~~~~~a~~a~~~l~~~~~~gr~l~V~ 131 (314)
+++|+++|+ +||+|.+|. |+.++.+ ++++||+||+|+++++|++|++.||+..+.+++|++.
T Consensus 2 ~~~l~~~~~~~~~~fG~v~~v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~g~~~~gr~l~~~ 70 (70)
T smart00361 2 DEDFEREFSEEEEYFGEVGKINKIYIDNVGYENHKRGNVYITFERSEDAARAIVDLNGRYFDGRTVKAE 70 (70)
T ss_pred chhHHHHHHHHHHhcCCeeEEEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEeC
Confidence 678888888 999999996 7777666 8899999999999999999999999999999999873
No 64
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=99.36 E-value=1.5e-12 Score=113.37 Aligned_cols=74 Identities=27% Similarity=0.636 Sum_probs=70.4
Q ss_pred ceEEEcCCCCCCCHHHHHHHHhccCCeEEEEEeecCCCCCcceEEEEEeCChHHHHHHHHhcCCeeeCCeEEEEeecCCC
Q 021295 57 KKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVKKAEPK 136 (314)
Q Consensus 57 ~~l~V~nLp~~~~e~~l~~~F~~~G~v~~v~i~~~~~~g~~rG~afV~F~~~~~a~~a~~~l~~~~~~gr~l~V~~a~~~ 136 (314)
.+|||+|||.++++.+|+.+|++|++|.+++|+++ |+||..++..+++.||..||...|++..|.|+.++.+
T Consensus 3 ~KLFIGNLp~~~~~~elr~lFe~ygkVlECDIvKN--------YgFVHiEdktaaedairNLhgYtLhg~nInVeaSksK 74 (346)
T KOG0109|consen 3 VKLFIGNLPREATEQELRSLFEQYGKVLECDIVKN--------YGFVHIEDKTAAEDAIRNLHGYTLHGVNINVEASKSK 74 (346)
T ss_pred cchhccCCCcccchHHHHHHHHhhCceEeeeeecc--------cceEEeecccccHHHHhhcccceecceEEEEEecccc
Confidence 57999999999999999999999999999999977 9999999999999999999999999999999998887
Q ss_pred CC
Q 021295 137 KP 138 (314)
Q Consensus 137 ~~ 138 (314)
..
T Consensus 75 sk 76 (346)
T KOG0109|consen 75 SK 76 (346)
T ss_pred CC
Confidence 43
No 65
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=99.31 E-value=9.9e-12 Score=84.50 Aligned_cols=56 Identities=25% Similarity=0.559 Sum_probs=51.0
Q ss_pred HHHHHhccCCeEEEEEeecCCCCCcceEEEEEeCChHHHHHHHHhcCCeeeCCeEEEEeec
Q 021295 73 FKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVKKA 133 (314)
Q Consensus 73 l~~~F~~~G~v~~v~i~~~~~~g~~rG~afV~F~~~~~a~~a~~~l~~~~~~gr~l~V~~a 133 (314)
|+++|++||+|++|.+..+. +++|||+|++.++|++|++.||+..+.+++|+|++|
T Consensus 1 L~~~f~~fG~V~~i~~~~~~-----~~~a~V~f~~~~~A~~a~~~l~~~~~~g~~l~V~~a 56 (56)
T PF13893_consen 1 LYKLFSKFGEVKKIKIFKKK-----RGFAFVEFASVEDAQKAIEQLNGRQFNGRPLKVSYA 56 (56)
T ss_dssp HHHHHTTTS-EEEEEEETTS-----TTEEEEEESSHHHHHHHHHHHTTSEETTEEEEEEEE
T ss_pred ChHHhCCcccEEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEC
Confidence 78999999999999998763 579999999999999999999999999999999875
No 66
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.31 E-value=3.4e-12 Score=113.76 Aligned_cols=84 Identities=17% Similarity=0.389 Sum_probs=79.5
Q ss_pred CCCcceEEEcCCCCCCCHHHHHHHHhccCCeEEEEEeecCCCCCcceEEEEEeCChHHHHHHHHhcCCeeeCCeEEEEee
Q 021295 53 DFKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVKK 132 (314)
Q Consensus 53 ~~~~~~l~V~nLp~~~~e~~l~~~F~~~G~v~~v~i~~~~~~g~~rG~afV~F~~~~~a~~a~~~l~~~~~~gr~l~V~~ 132 (314)
.++.+.|||..|.+-++++||.-+|+.||+|+.+.|++|+.|+.+--||||||++.+++++|.-+|+++.|+.+.|.|.+
T Consensus 236 ~PPeNVLFVCKLNPVTtDeDLeiIFSrFG~i~sceVIRD~ktgdsLqyaFiEFen~escE~AyFKMdNvLIDDrRIHVDF 315 (479)
T KOG0415|consen 236 KPPENVLFVCKLNPVTTDEDLEIIFSRFGKIVSCEVIRDRKTGDSLQYAFIEFENKESCEQAYFKMDNVLIDDRRIHVDF 315 (479)
T ss_pred CCCcceEEEEecCCcccccchhhHHhhcccceeeeEEecccccchhheeeeeecchhhHHHHHhhhcceeeccceEEeeh
Confidence 35678999999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred cCCC
Q 021295 133 AEPK 136 (314)
Q Consensus 133 a~~~ 136 (314)
....
T Consensus 316 SQSV 319 (479)
T KOG0415|consen 316 SQSV 319 (479)
T ss_pred hhhh
Confidence 6654
No 67
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=99.29 E-value=2.9e-11 Score=102.37 Aligned_cols=125 Identities=18% Similarity=0.330 Sum_probs=101.7
Q ss_pred CCCCcccEEEEEECCHHHHHHHHHcc--CccCCcEEEEeecCCCCCCC--------------------------------
Q 021295 5 KTGQPRGFGFVTYADPSVVDKVIEDT--HIINGKQVEIKRTIPKGAVG-------------------------------- 50 (314)
Q Consensus 5 ~tg~~kG~aFV~f~~~~~a~~A~~~~--~~i~g~~i~v~~~~~~~~~~-------------------------------- 50 (314)
.|.+.||-|||.|.+.+.|..|+.++ ..+-++.+++..+..+.+.-
T Consensus 47 kt~KmRGQA~VvFk~~~~As~A~r~l~gfpFygK~mriqyA~s~sdii~~~~~~~v~~~~k~~~~~~~~~~~~~~~ng~~ 126 (221)
T KOG4206|consen 47 KTPKMRGQAFVVFKETEAASAALRALQGFPFYGKPMRIQYAKSDSDIIAQAPGTFVEKEKKINGEILARIKQPLDTNGHF 126 (221)
T ss_pred CCCCccCceEEEecChhHHHHHHHHhcCCcccCchhheecccCccchhhccCceeccccCccccccccccCCcccccccc
Confidence 58899999999999999999999844 36677777776654331110
Q ss_pred --------------CCCCCcceEEEcCCCCCCCHHHHHHHHhccCCeEEEEEeecCCCCCcceEEEEEeCChHHHHHHHH
Q 021295 51 --------------SKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLA 116 (314)
Q Consensus 51 --------------~~~~~~~~l~V~nLp~~~~e~~l~~~F~~~G~v~~v~i~~~~~~g~~rG~afV~F~~~~~a~~a~~ 116 (314)
....+...||+.|||.+++.+.|..+|++|.-.++|+++..+ ++.|||+|++...+..|..
T Consensus 127 ~~~~~~~~p~p~~~~~~ppn~ilf~~niP~es~~e~l~~lf~qf~g~keir~i~~~-----~~iAfve~~~d~~a~~a~~ 201 (221)
T KOG4206|consen 127 YNMNRMNLPPPFLAQMAPPNNILFLTNIPSESESEMLSDLFEQFPGFKEIRLIPPR-----SGIAFVEFLSDRQASAAQQ 201 (221)
T ss_pred cccccccCCCCccccCCCCceEEEEecCCcchhHHHHHHHHhhCcccceeEeccCC-----CceeEEecchhhhhHHHhh
Confidence 113456789999999999999999999999999999998764 5699999999999999999
Q ss_pred hcCCeeeC-CeEEEEeecC
Q 021295 117 KGNKLELA-GAQVEVKKAE 134 (314)
Q Consensus 117 ~l~~~~~~-gr~l~V~~a~ 134 (314)
.+....|. .+++.|.+++
T Consensus 202 ~lq~~~it~~~~m~i~~a~ 220 (221)
T KOG4206|consen 202 ALQGFKITKKNTMQITFAK 220 (221)
T ss_pred hhccceeccCceEEecccC
Confidence 99888876 7788887764
No 68
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=99.29 E-value=2.4e-12 Score=109.73 Aligned_cols=116 Identities=24% Similarity=0.431 Sum_probs=93.3
Q ss_pred cccEEEEEECCHHHHHHHHH--ccCccCCcEEEEeecCCC------CC-------CC---CCCCCcceEEEcCCCCCCCH
Q 021295 9 PRGFGFVTYADPSVVDKVIE--DTHIINGKQVEIKRTIPK------GA-------VG---SKDFKTKKIFVGGIPSSVNE 70 (314)
Q Consensus 9 ~kG~aFV~f~~~~~a~~A~~--~~~~i~g~~i~v~~~~~~------~~-------~~---~~~~~~~~l~V~nLp~~~~e 70 (314)
-.+|+||+|.++.+|+.|+. +..+|.+..+.++++... .. .. ........|+|.+|+..+.|
T Consensus 34 k~gf~fv~fed~rda~Dav~~l~~~~l~~e~~vve~~r~~~~~~g~~~~g~r~~~~~~~~~p~~s~~r~~~~~~~~r~~~ 113 (216)
T KOG0106|consen 34 KNGFGFVEFEDPRDADDAVHDLDGKELCGERLVVEHARGKRRGRGRPRGGDRRSDSRRYRPPSRTHFRLIVRNLSLRVSW 113 (216)
T ss_pred ecccceeccCchhhhhcccchhcCceecceeeeeecccccccccCCCCCCCccchhhccCCcccccceeeeccchhhhhH
Confidence 45899999999999999998 344677777777776632 00 11 12345678999999999999
Q ss_pred HHHHHHHhccCCeEEEEEeecCCCCCcceEEEEEeCChHHHHHHHHhcCCeeeCCeEEEEee
Q 021295 71 DEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVKK 132 (314)
Q Consensus 71 ~~l~~~F~~~G~v~~v~i~~~~~~g~~rG~afV~F~~~~~a~~a~~~l~~~~~~gr~l~V~~ 132 (314)
++|+++|.++|++..+.+. +.++||+|++.++|.+||++|+...|.++.|.+..
T Consensus 114 qdl~d~~~~~g~~~~~~~~--------~~~~~v~Fs~~~da~ra~~~l~~~~~~~~~l~~~~ 167 (216)
T KOG0106|consen 114 QDLKDHFRPAGEVTYVDAR--------RNFAFVEFSEQEDAKRALEKLDGKKLNGRRISVEK 167 (216)
T ss_pred HHHhhhhcccCCCchhhhh--------ccccceeehhhhhhhhcchhccchhhcCceeeecc
Confidence 9999999999999655552 34899999999999999999999999999999943
No 69
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=99.25 E-value=7e-12 Score=113.38 Aligned_cols=83 Identities=41% Similarity=0.772 Sum_probs=78.2
Q ss_pred CcceEEEcCCCCCCCHHHHHHHHhccCCeEEEEEeecCCCCCcceEEEEEeCChHHHHHHHHhcCCeeeCCeEEEEeecC
Q 021295 55 KTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVKKAE 134 (314)
Q Consensus 55 ~~~~l~V~nLp~~~~e~~l~~~F~~~G~v~~v~i~~~~~~g~~rG~afV~F~~~~~a~~a~~~l~~~~~~gr~l~V~~a~ 134 (314)
+..+|||++|+|+++||.|++.|.+|++|.++.|++|+.++++++|.||+|++++.+.++|.. ..+.|+++.|+++.|.
T Consensus 5 ~~~KlfiGgisw~ttee~Lr~yf~~~Gev~d~~vm~d~~t~rsrgFgfv~f~~~~~v~~vl~~-~~h~~dgr~ve~k~av 83 (311)
T KOG4205|consen 5 ESGKLFIGGLSWETTEESLREYFSQFGEVTDCVVMRDPSTGRSRGFGFVTFATPEGVDAVLNA-RTHKLDGRSVEPKRAV 83 (311)
T ss_pred CCcceeecCcCccccHHHHHHHhcccCceeeEEEeccCCCCCcccccceecCCCcchheeecc-cccccCCccccceecc
Confidence 678999999999999999999999999999999999999999999999999999999999887 6778999999999998
Q ss_pred CCCC
Q 021295 135 PKKP 138 (314)
Q Consensus 135 ~~~~ 138 (314)
++..
T Consensus 84 ~r~~ 87 (311)
T KOG4205|consen 84 SRED 87 (311)
T ss_pred Cccc
Confidence 8764
No 70
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=99.24 E-value=6.3e-12 Score=112.50 Aligned_cols=79 Identities=24% Similarity=0.494 Sum_probs=75.5
Q ss_pred cceEEEcCCCCCCCHHHHHHHHhccCCeEEEEEeecCCCCCcceEEEEEeCChHHHHHHHHhcCCeeeCCeEEEEeecC
Q 021295 56 TKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVKKAE 134 (314)
Q Consensus 56 ~~~l~V~nLp~~~~e~~l~~~F~~~G~v~~v~i~~~~~~g~~rG~afV~F~~~~~a~~a~~~l~~~~~~gr~l~V~~a~ 134 (314)
.++|||+.|.+++.|+.|+..|..||+|++|.+..|+.|+++|+||||||+-+|.|+-|++.||...+.+|.|+|....
T Consensus 113 McRvYVGSIsfEl~EDtiR~AF~PFGPIKSInMSWDp~T~kHKgFAFVEYEvPEaAqLAlEqMNg~mlGGRNiKVgrPs 191 (544)
T KOG0124|consen 113 MCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRPS 191 (544)
T ss_pred hHheeeeeeEEEechHHHHhhccCCCCcceeecccccccccccceEEEEEeCcHHHHHHHHHhccccccCccccccCCC
Confidence 4689999999999999999999999999999999999999999999999999999999999999999999999997433
No 71
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=99.21 E-value=6.7e-11 Score=111.23 Aligned_cols=130 Identities=17% Similarity=0.293 Sum_probs=97.0
Q ss_pred CCCCCCCCcccEEEEEECCHHHHHHHHH--ccCccCCcEEEEeecCCCCCCC----------------------------
Q 021295 1 MKDRKTGQPRGFGFVTYADPSVVDKVIE--DTHIINGKQVEIKRTIPKGAVG---------------------------- 50 (314)
Q Consensus 1 m~d~~tg~~kG~aFV~f~~~~~a~~A~~--~~~~i~g~~i~v~~~~~~~~~~---------------------------- 50 (314)
++|.+|+++|||+||+|.+.++|.+|++ +..+|.++.|+|...+.+....
T Consensus 311 ~~d~~tG~skgfGfi~f~~~~~ar~a~e~lngfelAGr~ikV~~v~~r~~~~~a~~~~~d~D~~d~~gl~~~~~g~~Ql~ 390 (549)
T KOG0147|consen 311 TKDSETGRSKGFGFITFVNKEDARKALEQLNGFELAGRLIKVSVVTERVDTKEAAVTQFDFDEDDRQGLSLGSGGRNQLM 390 (549)
T ss_pred ccccccccccCcceEEEecHHHHHHHHHHhccceecCceEEEEEeeeecccccccccccccchhhccccccccccHHHHH
Confidence 4677899999999999999999999988 4458889988874322110000
Q ss_pred ----------------------------------------CCC-------CCcceEEEcCCCCCCCH----------HHH
Q 021295 51 ----------------------------------------SKD-------FKTKKIFVGGIPSSVNE----------DEF 73 (314)
Q Consensus 51 ----------------------------------------~~~-------~~~~~l~V~nLp~~~~e----------~~l 73 (314)
.+. +++.+|.|.|+-...+| |||
T Consensus 391 ~kla~~~~~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~p~~~~p~~~i~t~C~lL~nMFdpstete~n~d~eI~edV 470 (549)
T KOG0147|consen 391 AKLAEGKGRSLPSTAISALLLLAKLASAAQFNGVVRVRSVDPADASPAFDIPTQCLLLSNMFDPSTETEPNWDQEIREDV 470 (549)
T ss_pred HHHhccCCccccchhhhHHHhccccchHHhhcCCcCccccCccccccccCCccHHHHHhhcCCcccccCcchhhHHHHHH
Confidence 001 33445556665333222 677
Q ss_pred HHHHhccCCeEEEEEeecCCCCCcceEEEEEeCChHHHHHHHHhcCCeeeCCeEEEEeecCC
Q 021295 74 KDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVKKAEP 135 (314)
Q Consensus 74 ~~~F~~~G~v~~v~i~~~~~~g~~rG~afV~F~~~~~a~~a~~~l~~~~~~gr~l~V~~a~~ 135 (314)
++.+.++|+|..|.|-++ +.|+.||.|++.++|.+|+.+||+-||.++.|.+++...
T Consensus 471 ~Eec~k~g~v~hi~vd~n-----s~g~VYvrc~s~~~A~~a~~alhgrWF~gr~Ita~~~~~ 527 (549)
T KOG0147|consen 471 IEECGKHGKVCHIFVDKN-----SAGCVYVRCPSAEAAGTAVKALHGRWFAGRMITAKYLPL 527 (549)
T ss_pred HHHHHhcCCeeEEEEccC-----CCceEEEecCcHHHHHHHHHHHhhhhhccceeEEEEeeh
Confidence 788899999988877544 348999999999999999999999999999999987544
No 72
>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.19 E-value=4.2e-11 Score=106.75 Aligned_cols=81 Identities=31% Similarity=0.622 Sum_probs=72.4
Q ss_pred CCCCCCcceEEEcCCCCCCCHHHHHHHHhccCCeEEEEEeecCCCCCcceEEEEEeCChHHHHHHHHh-cCCeeeCCeEE
Q 021295 50 GSKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAK-GNKLELAGAQV 128 (314)
Q Consensus 50 ~~~~~~~~~l~V~nLp~~~~e~~l~~~F~~~G~v~~v~i~~~~~~g~~rG~afV~F~~~~~a~~a~~~-l~~~~~~gr~l 128 (314)
+.++...++|||++|-..++|.+|+++|.+||+|+.|.|+.. +++|||+|++.++|+.|.++ ++.+.|+++.|
T Consensus 222 pPeD~~I~tLyIg~l~d~v~e~dIrdhFyqyGeirsi~~~~~------~~CAFv~ftTR~aAE~Aae~~~n~lvI~G~Rl 295 (377)
T KOG0153|consen 222 PPEDTSIKTLYIGGLNDEVLEQDIRDHFYQYGEIRSIRILPR------KGCAFVTFTTREAAEKAAEKSFNKLVINGFRL 295 (377)
T ss_pred CCcccceeEEEecccccchhHHHHHHHHhhcCCeeeEEeecc------cccceeeehhhHHHHHHHHhhcceeeecceEE
Confidence 345667789999999999999999999999999999999875 45999999999999999886 58888999999
Q ss_pred EEeecCCC
Q 021295 129 EVKKAEPK 136 (314)
Q Consensus 129 ~V~~a~~~ 136 (314)
+|.|..++
T Consensus 296 ~i~Wg~~~ 303 (377)
T KOG0153|consen 296 KIKWGRPK 303 (377)
T ss_pred EEEeCCCc
Confidence 99999883
No 73
>KOG4208 consensus Nucleolar RNA-binding protein NIFK [General function prediction only]
Probab=99.19 E-value=6.8e-11 Score=98.60 Aligned_cols=85 Identities=25% Similarity=0.444 Sum_probs=78.0
Q ss_pred CCCCcceEEEcCCCCCCCHHHHHHHHhcc-CCeEEEEEeecCCCCCcceEEEEEeCChHHHHHHHHhcCCeeeCCeEEEE
Q 021295 52 KDFKTKKIFVGGIPSSVNEDEFKDFFMQF-GDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEV 130 (314)
Q Consensus 52 ~~~~~~~l~V~nLp~~~~e~~l~~~F~~~-G~v~~v~i~~~~~~g~~rG~afV~F~~~~~a~~a~~~l~~~~~~gr~l~V 130 (314)
.......++|..||.-+.|.+|..+|.++ |.|.++++.+++.|+.+|+||||+|++++.|+-|.+.||+..|.++.|.|
T Consensus 45 ~~~~~g~~~~~~~p~g~~e~~~~~~~~q~~g~v~r~rlsRnkrTGNSKgYAFVEFEs~eVA~IaAETMNNYLl~e~lL~c 124 (214)
T KOG4208|consen 45 EQEIEGVVYVDHIPHGFFETEILNYFRQFGGTVTRFRLSRNKRTGNSKGYAFVEFESEEVAKIAAETMNNYLLMEHLLEC 124 (214)
T ss_pred ccCCccceeecccccchhHHHHhhhhhhcCCeeEEEEeecccccCCcCceEEEEeccHHHHHHHHHHhhhhhhhhheeee
Confidence 44556789999999999999999999988 78888999999999999999999999999999999999999999999999
Q ss_pred eecCCC
Q 021295 131 KKAEPK 136 (314)
Q Consensus 131 ~~a~~~ 136 (314)
....+.
T Consensus 125 ~vmppe 130 (214)
T KOG4208|consen 125 HVMPPE 130 (214)
T ss_pred EEeCch
Confidence 877665
No 74
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.18 E-value=8.5e-11 Score=113.40 Aligned_cols=77 Identities=26% Similarity=0.457 Sum_probs=69.8
Q ss_pred eEEEcCCCCCCCHHHHHHHHhccCCeEEEEEeecCCCC---CcceEEEEEeCChHHHHHHHHhcCCeeeCCeEEEEeecC
Q 021295 58 KIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTS---RSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVKKAE 134 (314)
Q Consensus 58 ~l~V~nLp~~~~e~~l~~~F~~~G~v~~v~i~~~~~~g---~~rG~afV~F~~~~~a~~a~~~l~~~~~~gr~l~V~~a~ 134 (314)
+|||.||+++++.++|.++|.+.|.|..|.|...+..- .+.||+||+|.++++|++|+++|+.+.|+++.|+|+.+.
T Consensus 517 ~lfvkNlnf~Tt~e~l~~~F~k~G~VlS~~I~kkkd~~~k~lSmGfgFVEF~~~e~A~~a~k~lqgtvldGH~l~lk~S~ 596 (725)
T KOG0110|consen 517 KLFVKNLNFDTTLEDLEDLFSKQGTVLSIEISKKKDPANKYLSMGFGFVEFAKPESAQAALKALQGTVLDGHKLELKISE 596 (725)
T ss_pred hhhhhcCCcccchhHHHHHHHhcCeEEEEEEeccccccccccccceeEEEecCHHHHHHHHHHhcCceecCceEEEEecc
Confidence 49999999999999999999999999999888664321 245999999999999999999999999999999999988
No 75
>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms]
Probab=99.18 E-value=2.3e-10 Score=107.29 Aligned_cols=79 Identities=28% Similarity=0.577 Sum_probs=68.7
Q ss_pred ceEEEcCCCCCCCHHHHHHHHhccCCeEEEEEeecCCCCCcceEEEEEeCChHHHHHHHHhcCCeeeCCeEEEEeecCCC
Q 021295 57 KKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVKKAEPK 136 (314)
Q Consensus 57 ~~l~V~nLp~~~~e~~l~~~F~~~G~v~~v~i~~~~~~g~~rG~afV~F~~~~~a~~a~~~l~~~~~~gr~l~V~~a~~~ 136 (314)
.+|||.|||.++++++|+++|.+||+|++..|.......+...|+||+|++.++++.||++ +.+.|.+++|.|+..++.
T Consensus 289 ~~i~V~nlP~da~~~~l~~~Fk~FG~Ik~~~I~vr~~~~~~~~fgFV~f~~~~~~~~~i~A-sp~~ig~~kl~Veek~~~ 367 (419)
T KOG0116|consen 289 LGIFVKNLPPDATPAELEEVFKQFGPIKEGGIQVRSPGGKNPCFGFVEFENAAAVQNAIEA-SPLEIGGRKLNVEEKRPG 367 (419)
T ss_pred cceEeecCCCCCCHHHHHHHHhhcccccccceEEeccCCCcCceEEEEEeecchhhhhhhc-CccccCCeeEEEEecccc
Confidence 4699999999999999999999999999988876543344458999999999999999999 689999999999876543
No 76
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=99.16 E-value=7.1e-11 Score=114.73 Aligned_cols=79 Identities=28% Similarity=0.556 Sum_probs=73.5
Q ss_pred CCcceEEEcCCCCCCCHHHHHHHHhccCCeEEEEEeecCCCCCcceEEEEEeCChHHHHHHHHhcCCeeeCCeEEEEeec
Q 021295 54 FKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVKKA 133 (314)
Q Consensus 54 ~~~~~l~V~nLp~~~~e~~l~~~F~~~G~v~~v~i~~~~~~g~~rG~afV~F~~~~~a~~a~~~l~~~~~~gr~l~V~~a 133 (314)
+.++||||+.|+..++|+||..+|++||+|++|.|+.. ++||||++....+|++||.+|+++.+..+.|+|.||
T Consensus 419 V~SrTLwvG~i~k~v~e~dL~~~feefGeiqSi~li~~------R~cAfI~M~~RqdA~kalqkl~n~kv~~k~Iki~Wa 492 (894)
T KOG0132|consen 419 VCSRTLWVGGIPKNVTEQDLANLFEEFGEIQSIILIPP------RGCAFIKMVRRQDAEKALQKLSNVKVADKTIKIAWA 492 (894)
T ss_pred EeeeeeeeccccchhhHHHHHHHHHhcccceeEeeccC------CceeEEEEeehhHHHHHHHHHhcccccceeeEEeee
Confidence 45689999999999999999999999999999999865 679999999999999999999999999999999999
Q ss_pred CCCCC
Q 021295 134 EPKKP 138 (314)
Q Consensus 134 ~~~~~ 138 (314)
..+-.
T Consensus 493 ~g~G~ 497 (894)
T KOG0132|consen 493 VGKGP 497 (894)
T ss_pred ccCCc
Confidence 87654
No 77
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=99.15 E-value=5.8e-10 Score=102.18 Aligned_cols=127 Identities=24% Similarity=0.393 Sum_probs=102.8
Q ss_pred CCCCcccEEEEEECCHHHHHHHHH--ccCccCCcEEEEeecCCCCC----------------------------------
Q 021295 5 KTGQPRGFGFVTYADPSVVDKVIE--DTHIINGKQVEIKRTIPKGA---------------------------------- 48 (314)
Q Consensus 5 ~tg~~kG~aFV~f~~~~~a~~A~~--~~~~i~g~~i~v~~~~~~~~---------------------------------- 48 (314)
+++++||+|.|||+++|.++||++ +.+++++++|.||.....+.
T Consensus 81 ~~GK~rGcavVEFk~~E~~qKa~E~lnk~~~~GR~l~vKEd~d~q~~~~~~~~r~g~~~f~~~~~~q~G~~~l~~~g~gg 160 (608)
T KOG4212|consen 81 ESGKARGCAVVEFKDPENVQKALEKLNKYEVNGRELVVKEDHDEQRDQYGRIVRDGGGGFGGGGGVQGGNGGLNGGGGGG 160 (608)
T ss_pred cCCCcCCceEEEeeCHHHHHHHHHHhhhccccCceEEEeccCchhhhhhhheeeccCcccccCcceecccccccccCCCC
Confidence 689999999999999999999999 55689999999975432100
Q ss_pred --------CCC---------------------------------------CCCCcceEEEcCCCCCCCHHHHHHHHhccC
Q 021295 49 --------VGS---------------------------------------KDFKTKKIFVGGIPSSVNEDEFKDFFMQFG 81 (314)
Q Consensus 49 --------~~~---------------------------------------~~~~~~~l~V~nLp~~~~e~~l~~~F~~~G 81 (314)
..+ ..+...++||.||.+.+..+.|++.|.-.|
T Consensus 161 G~~~Rg~~~~D~Dr~sr~~~t~t~~~~~~~~~~~~lfgl~~~Flr~~h~f~pPl~~k~fvanl~~~vg~~kL~qvfgmAG 240 (608)
T KOG4212|consen 161 GDRDRGFSRRDDDRLSRRNNTNTMSNDYNNSSNYNLFGLSASFLRSLHIFSPPLHNKVFVANLDYKVGNKKLKQVFGMAG 240 (608)
T ss_pred ccccCCCCcccccccccccCccccccccccchhhhcccchhhhhhhccCCCCCccceeeeeccccccchHHHHHHhccce
Confidence 000 011224789999999999999999999999
Q ss_pred CeEEEEEeecCCCCCcceEEEEEeCChHHHHHHHHhcCCeeeCCeEEEEee
Q 021295 82 DVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVKK 132 (314)
Q Consensus 82 ~v~~v~i~~~~~~g~~rG~afV~F~~~~~a~~a~~~l~~~~~~gr~l~V~~ 132 (314)
+|+.|.+-.|++ +.+++||.|+++.+-+|-+||.+|+..-+..++..+..
T Consensus 241 kv~~vdf~idKe-G~s~G~~vi~y~hpveavqaIsml~~~g~~~~~~~~Rl 290 (608)
T KOG4212|consen 241 KVQSVDFSIDKE-GNSRGFAVIEYDHPVEAVQAISMLDRQGLFDRRMTVRL 290 (608)
T ss_pred eeeeeceeeccc-cccCCeeEEEecchHHHHHHHHhhccCCCccccceeec
Confidence 999999999965 58999999999999999999999987666666655554
No 78
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=99.14 E-value=1.6e-10 Score=97.79 Aligned_cols=83 Identities=19% Similarity=0.440 Sum_probs=75.2
Q ss_pred CcceEEEcCCCCCCCHHHHHH----HHhccCCeEEEEEeecCCCCCcceEEEEEeCChHHHHHHHHhcCCeeeCCeEEEE
Q 021295 55 KTKKIFVGGIPSSVNEDEFKD----FFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEV 130 (314)
Q Consensus 55 ~~~~l~V~nLp~~~~e~~l~~----~F~~~G~v~~v~i~~~~~~g~~rG~afV~F~~~~~a~~a~~~l~~~~~~gr~l~V 130 (314)
+..||||.||++.+..++|+. +|++||+|.+|.++. |.+.+|-|||.|++.++|..|+.+|+++.+-+++++|
T Consensus 8 pn~TlYInnLnekI~~~elkrsL~~LFsqfG~ildI~a~k---t~KmRGQA~VvFk~~~~As~A~r~l~gfpFygK~mri 84 (221)
T KOG4206|consen 8 PNGTLYINNLNEKIKKDELKRSLYLLFSQFGKILDISAFK---TPKMRGQAFVVFKETEAASAALRALQGFPFYGKPMRI 84 (221)
T ss_pred CCceEeehhccccccHHHHHHHHHHHHHhhCCeEEEEecC---CCCccCceEEEecChhHHHHHHHHhcCCcccCchhhe
Confidence 344999999999999999998 999999999998874 5678999999999999999999999999999999999
Q ss_pred eecCCCCCCC
Q 021295 131 KKAEPKKPNL 140 (314)
Q Consensus 131 ~~a~~~~~~~ 140 (314)
.+|+.+....
T Consensus 85 qyA~s~sdii 94 (221)
T KOG4206|consen 85 QYAKSDSDII 94 (221)
T ss_pred ecccCccchh
Confidence 9998876543
No 79
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=99.11 E-value=2.6e-11 Score=109.17 Aligned_cols=132 Identities=17% Similarity=0.269 Sum_probs=102.1
Q ss_pred CCCCcccEEEEEECCHHHHHHHHHc-cCccCCcEEEEeecCCCCC---------------------------CCCCCCCc
Q 021295 5 KTGQPRGFGFVTYADPSVVDKVIED-THIINGKQVEIKRTIPKGA---------------------------VGSKDFKT 56 (314)
Q Consensus 5 ~tg~~kG~aFV~f~~~~~a~~A~~~-~~~i~g~~i~v~~~~~~~~---------------------------~~~~~~~~ 56 (314)
-+++..|-|||.|..+++|++||.+ ...|..+.|++-+++..+. ........
T Consensus 201 pdgrpTGdAFvlfa~ee~aq~aL~khrq~iGqRYIElFRSTaaEvqqvlnr~~s~pLi~~~~sp~~p~~p~~~~p~~~~k 280 (508)
T KOG1365|consen 201 PDGRPTGDAFVLFACEEDAQFALRKHRQNIGQRYIELFRSTAAEVQQVLNREVSEPLIPGLTSPLLPGGPARLVPPTRSK 280 (508)
T ss_pred CCCCcccceEEEecCHHHHHHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHhhccccccCCCCCCCCCCCccccCCCCCCC
Confidence 4789999999999999999999983 3345555555543321100 00122346
Q ss_pred ceEEEcCCCCCCCHHHHHHHHhccCC-eEE--EEEeecCCCCCcceEEEEEeCChHHHHHHHHhcCCeeeCCeEEEEeec
Q 021295 57 KKIFVGGIPSSVNEDEFKDFFMQFGD-VQE--HQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVKKA 133 (314)
Q Consensus 57 ~~l~V~nLp~~~~e~~l~~~F~~~G~-v~~--v~i~~~~~~g~~rG~afV~F~~~~~a~~a~~~l~~~~~~gr~l~V~~a 133 (314)
.+|.+.+||++++.|||.+||..|-. |.. |+|+.+ ..+++.|-|||+|.++|+|.+|..+.++..+..|.|+|..+
T Consensus 281 dcvRLRGLPy~AtvEdIL~FlgdFa~~i~f~gVHmv~N-~qGrPSGeAFIqm~nae~a~aaaqk~hk~~mk~RYiEvfp~ 359 (508)
T KOG1365|consen 281 DCVRLRGLPYEATVEDILDFLGDFATDIRFQGVHMVLN-GQGRPSGEAFIQMRNAERARAAAQKCHKKLMKSRYIEVFPC 359 (508)
T ss_pred CeeEecCCChhhhHHHHHHHHHHHhhhcccceeEEEEc-CCCCcChhhhhhhhhhHHHHHHHHHHHHhhcccceEEEeec
Confidence 78999999999999999999998853 433 777777 57899999999999999999999999999999999999876
Q ss_pred CCCC
Q 021295 134 EPKK 137 (314)
Q Consensus 134 ~~~~ 137 (314)
...+
T Consensus 360 S~ee 363 (508)
T KOG1365|consen 360 SVEE 363 (508)
T ss_pred cHHH
Confidence 6544
No 80
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=99.09 E-value=1.3e-10 Score=110.25 Aligned_cols=132 Identities=24% Similarity=0.454 Sum_probs=110.3
Q ss_pred CCCcccEEEEEECCHHHHHHHHH-ccCccCCcEEEEeecCCCCC-------------------CCCCCCCcceEEEcCCC
Q 021295 6 TGQPRGFGFVTYADPSVVDKVIE-DTHIINGKQVEIKRTIPKGA-------------------VGSKDFKTKKIFVGGIP 65 (314)
Q Consensus 6 tg~~kG~aFV~f~~~~~a~~A~~-~~~~i~g~~i~v~~~~~~~~-------------------~~~~~~~~~~l~V~nLp 65 (314)
..+.+-||||+|.+.++|.+|+. +...+.+.++++........ .........+|||++||
T Consensus 219 ~n~~~nfa~ie~~s~~~at~~~~~~~~~f~g~~~~~~r~~d~~~~p~~~~~~~~~~~~~~~~~~t~~~~~~~ki~v~~lp 298 (500)
T KOG0120|consen 219 LNLEKNFAFIEFRSISEATEAMALDGIIFEGRPLKIRRPHDYQPVPGITLSPSQLGKVGLLPASTDVPDSPNKIFVGGLP 298 (500)
T ss_pred ecccccceeEEecCCCchhhhhcccchhhCCCCceecccccccCCccchhhhccccccCCcccccCcccccchhhhccCc
Confidence 45678899999999999999998 44456677776654322111 11123456789999999
Q ss_pred CCCCHHHHHHHHhccCCeEEEEEeecCCCCCcceEEEEEeCChHHHHHHHHhcCCeeeCCeEEEEeecCCCC
Q 021295 66 SSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVKKAEPKK 137 (314)
Q Consensus 66 ~~~~e~~l~~~F~~~G~v~~v~i~~~~~~g~~rG~afV~F~~~~~a~~a~~~l~~~~~~gr~l~V~~a~~~~ 137 (314)
..+++++++++++.|++++...++.|..++.+++|||.+|.++.....|++.||++.+.+++|.|..|....
T Consensus 299 ~~l~~~q~~Ell~~fg~lk~f~lv~d~~~g~skg~af~ey~dpsvtd~A~agLnGm~lgd~~lvvq~A~~g~ 370 (500)
T KOG0120|consen 299 LYLTEDQVKELLDSFGPLKAFRLVKDSATGNSKGFAFCEYCDPSVTDQAIAGLNGMQLGDKKLVVQRAIVGA 370 (500)
T ss_pred CccCHHHHHHHHHhcccchhheeecccccccccceeeeeeeCCcchhhhhcccchhhhcCceeEeehhhccc
Confidence 999999999999999999999999999999999999999999999999999999999999999998877654
No 81
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=99.09 E-value=1.6e-10 Score=99.76 Aligned_cols=84 Identities=23% Similarity=0.451 Sum_probs=75.0
Q ss_pred CCcceEEEcCCCCCCCHHHHHHHHhccCCeEEEEEeecCCCCCcceEEEEEeCChHHHHHHHHhcCCeee-C--CeEEEE
Q 021295 54 FKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLEL-A--GAQVEV 130 (314)
Q Consensus 54 ~~~~~l~V~nLp~~~~e~~l~~~F~~~G~v~~v~i~~~~~~g~~rG~afV~F~~~~~a~~a~~~l~~~~~-~--gr~l~V 130 (314)
.+.++|||+-|...-+|||++.+|..||+|+++.+++.. ++.+||||||.|.+..+|++||..||+... - ...|.|
T Consensus 17 ~~drklfvgml~kqq~e~dvrrlf~pfG~~~e~tvlrg~-dg~sKGCAFVKf~s~~eAqaAI~aLHgSqTmpGASSSLVV 95 (371)
T KOG0146|consen 17 GDDRKLFVGMLNKQQSEDDVRRLFQPFGNIEECTVLRGP-DGNSKGCAFVKFSSHAEAQAAINALHGSQTMPGASSSLVV 95 (371)
T ss_pred ccchhhhhhhhcccccHHHHHHHhcccCCcceeEEecCC-CCCCCCceEEEeccchHHHHHHHHhcccccCCCCccceEE
Confidence 367899999999999999999999999999999999884 688999999999999999999999988653 3 367999
Q ss_pred eecCCCCC
Q 021295 131 KKAEPKKP 138 (314)
Q Consensus 131 ~~a~~~~~ 138 (314)
++|...++
T Consensus 96 K~ADTdkE 103 (371)
T KOG0146|consen 96 KFADTDKE 103 (371)
T ss_pred EeccchHH
Confidence 99887665
No 82
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=99.05 E-value=6.5e-10 Score=103.41 Aligned_cols=82 Identities=26% Similarity=0.443 Sum_probs=70.1
Q ss_pred CCCCcceEEEcCCCCCCCHHHHHHHHhccCCeEEEEEeecCCCCCcceEEEEEeCChHHHHHHHHhcCCeeeCCeEEEEe
Q 021295 52 KDFKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVK 131 (314)
Q Consensus 52 ~~~~~~~l~V~nLp~~~~e~~l~~~F~~~G~v~~v~i~~~~~~g~~rG~afV~F~~~~~a~~a~~~l~~~~~~gr~l~V~ 131 (314)
+......|-|..|||++|++||.+||+.+. |+.+.+.+ .++++.|-|||||+++|++++||++ +...|..+-|+|-
T Consensus 6 e~~~~~~vr~rGLPwsat~~ei~~Ff~~~~-I~~~~~~r--~~Gr~sGeA~Ve~~seedv~~Alkk-dR~~mg~RYIEVf 81 (510)
T KOG4211|consen 6 EGSTAFEVRLRGLPWSATEKEILDFFSNCG-IENLEIPR--RNGRPSGEAYVEFTSEEDVEKALKK-DRESMGHRYIEVF 81 (510)
T ss_pred CCCcceEEEecCCCccccHHHHHHHHhcCc-eeEEEEec--cCCCcCcceEEEeechHHHHHHHHh-hHHHhCCceEEEE
Confidence 344567889999999999999999999984 77766554 5899999999999999999999998 7888999999998
Q ss_pred ecCCCC
Q 021295 132 KAEPKK 137 (314)
Q Consensus 132 ~a~~~~ 137 (314)
.+...+
T Consensus 82 ~~~~~e 87 (510)
T KOG4211|consen 82 TAGGAE 87 (510)
T ss_pred ccCCcc
Confidence 775543
No 83
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=99.05 E-value=1.6e-09 Score=91.31 Aligned_cols=63 Identities=16% Similarity=0.285 Sum_probs=50.9
Q ss_pred ceEEEcCCCCCCCHHHHHHHHhccCCeEEEEEeecCCCCCcceEEEEEeCChHHHHHHHHhcCCeee
Q 021295 57 KKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLEL 123 (314)
Q Consensus 57 ~~l~V~nLp~~~~e~~l~~~F~~~G~v~~v~i~~~~~~g~~rG~afV~F~~~~~a~~a~~~l~~~~~ 123 (314)
.+|||.||..+|+|++|+.+|+.|--...++|... . .--.|||+|++.+.|..|+..|++..|
T Consensus 211 stlfianl~~~~~ed~l~~~~~~~~gf~~l~~~~~--~--g~~vaf~~~~~~~~at~am~~lqg~~~ 273 (284)
T KOG1457|consen 211 STLFIANLGPNCTEDELKQLLSRYPGFHILKIRAR--G--GMPVAFADFEEIEQATDAMNHLQGNLL 273 (284)
T ss_pred hhHhhhccCCCCCHHHHHHHHHhCCCceEEEEecC--C--CcceEeecHHHHHHHHHHHHHhhccee
Confidence 38999999999999999999999976666666432 1 123799999999999999988877654
No 84
>KOG0533 consensus RRM motif-containing protein [RNA processing and modification]
Probab=99.04 E-value=9.1e-10 Score=96.04 Aligned_cols=85 Identities=20% Similarity=0.427 Sum_probs=77.2
Q ss_pred CCCcceEEEcCCCCCCCHHHHHHHHhccCCeEEEEEeecCCCCCcceEEEEEeCChHHHHHHHHhcCCeeeCCeEEEEee
Q 021295 53 DFKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVKK 132 (314)
Q Consensus 53 ~~~~~~l~V~nLp~~~~e~~l~~~F~~~G~v~~v~i~~~~~~g~~rG~afV~F~~~~~a~~a~~~l~~~~~~gr~l~V~~ 132 (314)
+..+.+|+|.|||+.++++||+++|++|++++.+.|..++ .+++.|+|-|.|+..++|++|++.+|++.+++++|++..
T Consensus 80 ~~~~~~v~v~NL~~~V~~~Dl~eLF~~~~~~~r~~vhy~~-~G~s~Gta~v~~~r~~DA~~avk~~~gv~ldG~~mk~~~ 158 (243)
T KOG0533|consen 80 ETRSTKVNVSNLPYGVIDADLKELFAEFGELKRVAVHYDR-AGRSLGTADVSFNRRDDAERAVKKYNGVALDGRPMKIEI 158 (243)
T ss_pred CCCcceeeeecCCcCcchHHHHHHHHHhccceEEeeccCC-CCCCCccceeeecchHhHHHHHHHhcCcccCCceeeeEE
Confidence 3445789999999999999999999999999999999984 788999999999999999999999999999999999988
Q ss_pred cCCCCC
Q 021295 133 AEPKKP 138 (314)
Q Consensus 133 a~~~~~ 138 (314)
..+...
T Consensus 159 i~~~~~ 164 (243)
T KOG0533|consen 159 ISSPSQ 164 (243)
T ss_pred ecCccc
Confidence 776544
No 85
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=99.03 E-value=5.2e-10 Score=105.37 Aligned_cols=81 Identities=22% Similarity=0.521 Sum_probs=76.1
Q ss_pred cceEEEcCCCCCCCHHHHHHHHhccCCeEEEEEeecCCCCCcceEEEEEeCChHHHHHHHHhcCCeeeCCeEEEEeecCC
Q 021295 56 TKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVKKAEP 135 (314)
Q Consensus 56 ~~~l~V~nLp~~~~e~~l~~~F~~~G~v~~v~i~~~~~~g~~rG~afV~F~~~~~a~~a~~~l~~~~~~gr~l~V~~a~~ 135 (314)
.+.|||..|+..+...||+.+|++||+|+-.+|+++..+.-.+.|.||++.+.++|.+||+.||.++|.++.|.|+.++.
T Consensus 405 gRNlWVSGLSstTRAtDLKnlFSKyGKVvGAKVVTNaRsPGaRCYGfVTMSts~eAtkCI~hLHrTELHGrmISVEkaKN 484 (940)
T KOG4661|consen 405 GRNLWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTSAEATKCIEHLHRTELHGRMISVEKAKN 484 (940)
T ss_pred ccceeeeccccchhhhHHHHHHHHhcceeceeeeecCCCCCcceeEEEEecchHHHHHHHHHhhhhhhcceeeeeeeccc
Confidence 46899999999999999999999999999999999988888899999999999999999999999999999999987765
Q ss_pred C
Q 021295 136 K 136 (314)
Q Consensus 136 ~ 136 (314)
.
T Consensus 485 E 485 (940)
T KOG4661|consen 485 E 485 (940)
T ss_pred C
Confidence 3
No 86
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=99.03 E-value=2.9e-10 Score=97.57 Aligned_cols=131 Identities=21% Similarity=0.331 Sum_probs=104.1
Q ss_pred CCCcccEEEEEECCHHHHHHHHH--ccCccCCcEEEEeecCCCCC--CCCCCCCcceEEEcCCCCCCCHHHHHHHHhccC
Q 021295 6 TGQPRGFGFVTYADPSVVDKVIE--DTHIINGKQVEIKRTIPKGA--VGSKDFKTKKIFVGGIPSSVNEDEFKDFFMQFG 81 (314)
Q Consensus 6 tg~~kG~aFV~f~~~~~a~~A~~--~~~~i~g~~i~v~~~~~~~~--~~~~~~~~~~l~V~nLp~~~~e~~l~~~F~~~G 81 (314)
-..-+.++|+.|....+..++.. +...+....|++-..+..++ ..+.+....+||++.|..+++++.|...|.+|-
T Consensus 136 p~~~~~~~~~~~k~s~a~~k~~~~~~~Kki~~~~VR~a~gtswedPsl~ew~~~DfRIfcgdlgNevnd~vl~raf~Kfp 215 (290)
T KOG0226|consen 136 PQPIRPEAFESFKASDALLKAETEKEKKKIGKPPVRLAAGTSWEDPSLAEWDEDDFRIFCGDLGNEVNDDVLARAFKKFP 215 (290)
T ss_pred CCccCcccccCcchhhhhhhhccccccccccCcceeeccccccCCcccccCccccceeecccccccccHHHHHHHHHhcc
Confidence 34557889999988887777766 22344444455544333332 223556678999999999999999999999998
Q ss_pred CeEEEEEeecCCCCCcceEEEEEeCChHHHHHHHHhcCCeeeCCeEEEEeecCCC
Q 021295 82 DVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVKKAEPK 136 (314)
Q Consensus 82 ~v~~v~i~~~~~~g~~rG~afV~F~~~~~a~~a~~~l~~~~~~gr~l~V~~a~~~ 136 (314)
.....++++|+.|+++++|.||.|.+++++..|+..|++.-+..++|++....-+
T Consensus 216 sf~~akviRdkRTgKSkgygfVSf~~pad~~rAmrem~gkyVgsrpiklRkS~wk 270 (290)
T KOG0226|consen 216 SFQKAKVIRDKRTGKSKGYGFVSFRDPADYVRAMREMNGKYVGSRPIKLRKSEWK 270 (290)
T ss_pred chhhccccccccccccccceeeeecCHHHHHHHHHhhcccccccchhHhhhhhHH
Confidence 8889999999999999999999999999999999999999999999988655443
No 87
>KOG4209 consensus Splicing factor RNPS1, SR protein superfamily [RNA processing and modification]
Probab=99.01 E-value=7.5e-10 Score=96.70 Aligned_cols=85 Identities=18% Similarity=0.386 Sum_probs=79.9
Q ss_pred CCCCCcceEEEcCCCCCCCHHHHHHHHhccCCeEEEEEeecCCCCCcceEEEEEeCChHHHHHHHHhcCCeeeCCeEEEE
Q 021295 51 SKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEV 130 (314)
Q Consensus 51 ~~~~~~~~l~V~nLp~~~~e~~l~~~F~~~G~v~~v~i~~~~~~g~~rG~afV~F~~~~~a~~a~~~l~~~~~~gr~l~V 130 (314)
.++.+.+.|||+||.+.++.++|+.+|+.|+.|..|.|++|+.++++|+||||+|++.+.++++++ |+..+|.++.|+|
T Consensus 96 ~~~~d~~sv~v~nvd~~~t~~~~e~hf~~Cg~i~~~ti~~d~~~~~~k~~~yvef~~~~~~~~ay~-l~gs~i~~~~i~v 174 (231)
T KOG4209|consen 96 QKEVDAPSVWVGNVDFLVTLTKIELHFESCGGINRVTVPKDKFRGHPKGFAYVEFSSYELVEEAYK-LDGSEIPGPAIEV 174 (231)
T ss_pred hhccCCceEEEeccccccccchhhheeeccCCccceeeeccccCCCcceeEEEecccHhhhHHHhh-cCCccccccccee
Confidence 467788999999999999999999999999999999999999999999999999999999999999 8999999999999
Q ss_pred eecCCC
Q 021295 131 KKAEPK 136 (314)
Q Consensus 131 ~~a~~~ 136 (314)
.+..-.
T Consensus 175 t~~r~~ 180 (231)
T KOG4209|consen 175 TLKRTN 180 (231)
T ss_pred eeeeee
Confidence 877665
No 88
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=98.96 E-value=3.8e-09 Score=100.51 Aligned_cols=135 Identities=21% Similarity=0.369 Sum_probs=94.5
Q ss_pred CCCCCCCCcccEEEEEECCHHHHHHHHHcc--CccCCcEEEEeecCCCCCCC--------------------CCCCCcce
Q 021295 1 MKDRKTGQPRGFGFVTYADPSVVDKVIEDT--HIINGKQVEIKRTIPKGAVG--------------------SKDFKTKK 58 (314)
Q Consensus 1 m~d~~tg~~kG~aFV~f~~~~~a~~A~~~~--~~i~g~~i~v~~~~~~~~~~--------------------~~~~~~~~ 58 (314)
++|..|+.+|+|||.+|.++.....|+..+ ..+..+.+.|..+.+-.... ..-.++..
T Consensus 322 v~d~~~g~skg~af~ey~dpsvtd~A~agLnGm~lgd~~lvvq~A~~g~~~~~~~~~~~~~~~~~i~~~~~q~~g~~t~V 401 (500)
T KOG0120|consen 322 VKDSATGNSKGFAFCEYCDPSVTDQAIAGLNGMQLGDKKLVVQRAIVGASNANVNFNISQSQVPGIPLLMTQMAGIPTEV 401 (500)
T ss_pred ecccccccccceeeeeeeCCcchhhhhcccchhhhcCceeEeehhhccchhccccCCccccccccchhhhcccCCCcchh
Confidence 467789999999999999999999888843 35566777776654321110 11223334
Q ss_pred EEEcCCC--CCC-CH-------HHHHHHHhccCCeEEEEEeecCCC---CCcceEEEEEeCChHHHHHHHHhcCCeeeCC
Q 021295 59 IFVGGIP--SSV-NE-------DEFKDFFMQFGDVQEHQIMRDHST---SRSRGFGFITFDTEQAVDDLLAKGNKLELAG 125 (314)
Q Consensus 59 l~V~nLp--~~~-~e-------~~l~~~F~~~G~v~~v~i~~~~~~---g~~rG~afV~F~~~~~a~~a~~~l~~~~~~g 125 (314)
|.+.|+= .++ ++ |+|++.+.+|+.|..|.|+++..+ .-..|..||||.+.+++++|.+.|++..|.+
T Consensus 402 l~L~n~Vt~deLkdd~EyeeIlEdvr~ec~k~g~v~~v~ipr~~~~~~~~~G~GkVFVefas~ed~qrA~~~L~GrKF~n 481 (500)
T KOG0120|consen 402 LCLTNVVTPDELKDDEEYEEILEDVRTECAKFGAVRSVEIPRPYPDENPVPGTGKVFVEFADTEDSQRAMEELTGRKFAN 481 (500)
T ss_pred hhhhhcCCHHHhcchHHHHHHHHHHHHHhcccCceeEEecCCCCCCCCcCCCcccEEEEecChHHHHHHHHHccCceeCC
Confidence 4444421 111 22 445566678999999999987222 2245779999999999999999999999999
Q ss_pred eEEEEeecCC
Q 021295 126 AQVEVKKAEP 135 (314)
Q Consensus 126 r~l~V~~a~~ 135 (314)
+.|...+-.+
T Consensus 482 RtVvtsYyde 491 (500)
T KOG0120|consen 482 RTVVASYYDE 491 (500)
T ss_pred cEEEEEecCH
Confidence 9999887554
No 89
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=98.96 E-value=1.1e-08 Score=91.42 Aligned_cols=128 Identities=17% Similarity=0.299 Sum_probs=100.5
Q ss_pred CCCcccEEEEEECCHHHHHHHHH--ccCccCCcEEEEeecCCC---------C-------------------------CC
Q 021295 6 TGQPRGFGFVTYADPSVVDKVIE--DTHIINGKQVEIKRTIPK---------G-------------------------AV 49 (314)
Q Consensus 6 tg~~kG~aFV~f~~~~~a~~A~~--~~~~i~g~~i~v~~~~~~---------~-------------------------~~ 49 (314)
.|+.||-|++.|...++++.|++ +...+.++.|+|+++.-. . ..
T Consensus 179 ~G~lKGDaLc~y~K~ESVeLA~~ilDe~~~rg~~~rVerAkfq~Kge~~~~~k~k~k~~~~kk~~k~q~k~~dw~pd~~~ 258 (382)
T KOG1548|consen 179 QGKLKGDALCCYIKRESVELAIKILDEDELRGKKLRVERAKFQMKGEYDASKKEKGKCKDKKKLKKQQQKLLDWRPDRDD 258 (382)
T ss_pred CCCccCceEEEeecccHHHHHHHHhCcccccCcEEEEehhhhhhccCcCcccccccccccHHHHHHHHHhhcccCCCccc
Confidence 48899999999999999999998 666889999999765311 0 00
Q ss_pred CCCCCCcceEEEcCCCCC----CC-------HHHHHHHHhccCCeEEEEEeecCCCCCcceEEEEEeCChHHHHHHHHhc
Q 021295 50 GSKDFKTKKIFVGGIPSS----VN-------EDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKG 118 (314)
Q Consensus 50 ~~~~~~~~~l~V~nLp~~----~~-------e~~l~~~F~~~G~v~~v~i~~~~~~g~~rG~afV~F~~~~~a~~a~~~l 118 (314)
.++....++|.|.||-.- .+ +++|++..++||.|..|.|...+ +.|.+.|.|.+.++|+.||+.|
T Consensus 259 ~sk~r~~~tVi~kn~Ftp~~~~~~~~l~~dlkedl~eec~K~G~v~~vvv~d~h----PdGvvtV~f~n~eeA~~ciq~m 334 (382)
T KOG1548|consen 259 PSKARADRTVILKNMFTPEDFEKNPDLLNDLKEDLTEECEKFGQVRKVVVYDRH----PDGVVTVSFRNNEEADQCIQTM 334 (382)
T ss_pred cccccCCcEEEeeecCCHHHhccCHHHHHHHHHHHHHHHHHhCCcceEEEeccC----CCceeEEEeCChHHHHHHHHHh
Confidence 112334578999987532 23 35667778999999999887543 6789999999999999999999
Q ss_pred CCeeeCCeEEEEeecCCCC
Q 021295 119 NKLELAGAQVEVKKAEPKK 137 (314)
Q Consensus 119 ~~~~~~gr~l~V~~a~~~~ 137 (314)
++..|.+|+|..+....+.
T Consensus 335 ~GR~fdgRql~A~i~DG~t 353 (382)
T KOG1548|consen 335 DGRWFDGRQLTASIWDGKT 353 (382)
T ss_pred cCeeecceEEEEEEeCCcc
Confidence 9999999999988765543
No 90
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=98.88 E-value=1e-08 Score=91.71 Aligned_cols=83 Identities=19% Similarity=0.381 Sum_probs=74.8
Q ss_pred CCCcceEEEcCCCCCCCHHHHHHHHhccCCeE--------EEEEeecCCCCCcceEEEEEeCChHHHHHHHHhcCCeeeC
Q 021295 53 DFKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQ--------EHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELA 124 (314)
Q Consensus 53 ~~~~~~l~V~nLp~~~~e~~l~~~F~~~G~v~--------~v~i~~~~~~g~~rG~afV~F~~~~~a~~a~~~l~~~~~~ 124 (314)
....+.|||.+||.++|.+++.++|++||.|. .|+|.++. .++.||=|.|.|...++++-||+.|+...|.
T Consensus 131 ~~~Nt~VYVsgLP~DiT~dE~~~~~sKcGiI~~d~~t~epk~KlYrd~-~G~lKGDaLc~y~K~ESVeLA~~ilDe~~~r 209 (382)
T KOG1548|consen 131 PKVNTSVYVSGLPLDITVDEFAEVMSKCGIIMRDPQTGEPKVKLYRDN-QGKLKGDALCCYIKRESVELAIKILDEDELR 209 (382)
T ss_pred cccCceEEecCCCCcccHHHHHHHHHhcceEeccCCCCCeeEEEEecC-CCCccCceEEEeecccHHHHHHHHhCccccc
Confidence 34556799999999999999999999999876 48888885 5999999999999999999999999999999
Q ss_pred CeEEEEeecCCC
Q 021295 125 GAQVEVKKAEPK 136 (314)
Q Consensus 125 gr~l~V~~a~~~ 136 (314)
++.|+|+.|+-.
T Consensus 210 g~~~rVerAkfq 221 (382)
T KOG1548|consen 210 GKKLRVERAKFQ 221 (382)
T ss_pred CcEEEEehhhhh
Confidence 999999988654
No 91
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=98.87 E-value=8.4e-10 Score=92.78 Aligned_cols=79 Identities=19% Similarity=0.251 Sum_probs=71.2
Q ss_pred CCcceEEEcCCCCCCCHHHHHHHHhccCCeEEEEEeecCCCCCcceEEEEEeCChHHHHHHHHhcCCeeeCCeEEEEeec
Q 021295 54 FKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVKKA 133 (314)
Q Consensus 54 ~~~~~l~V~nLp~~~~e~~l~~~F~~~G~v~~v~i~~~~~~g~~rG~afV~F~~~~~a~~a~~~l~~~~~~gr~l~V~~a 133 (314)
+..++|||.||...++|+.|.++|-+.|+|.+|.|..++ +.+.| ||||+|+++.++.-|++.+|++.+.+++|.|++-
T Consensus 7 e~drtl~v~n~~~~v~eelL~ElfiqaGPV~kv~ip~~~-d~~~k-Fa~v~f~~E~sv~~a~~L~ng~~l~~~e~q~~~r 84 (267)
T KOG4454|consen 7 EMDRTLLVQNMYSGVSEELLSELFIQAGPVYKVGIPSGQ-DQEQK-FAYVFFPNENSVQLAGQLENGDDLEEDEEQRTLR 84 (267)
T ss_pred chhhHHHHHhhhhhhhHHHHHHHhhccCceEEEeCCCCc-cCCCc-eeeeecccccchhhhhhhcccchhccchhhcccc
Confidence 456899999999999999999999999999999999885 45566 9999999999999999999999999999888754
Q ss_pred C
Q 021295 134 E 134 (314)
Q Consensus 134 ~ 134 (314)
.
T Consensus 85 ~ 85 (267)
T KOG4454|consen 85 C 85 (267)
T ss_pred c
Confidence 3
No 92
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=98.87 E-value=1.9e-08 Score=90.73 Aligned_cols=127 Identities=13% Similarity=0.176 Sum_probs=96.6
Q ss_pred ccEEEEEECCHHHHHHHHH----ccCccCCcEEEEeecCCCCCCCC---CCCCcceE--EEcCCCCCCCHHHHHHHHhcc
Q 021295 10 RGFGFVTYADPSVVDKVIE----DTHIINGKQVEIKRTIPKGAVGS---KDFKTKKI--FVGGIPSSVNEDEFKDFFMQF 80 (314)
Q Consensus 10 kG~aFV~f~~~~~a~~A~~----~~~~i~g~~i~v~~~~~~~~~~~---~~~~~~~l--~V~nLp~~~~e~~l~~~F~~~ 80 (314)
+-.|+|+|+|.+.|+.++. +...|.++...+..++.+..... .....+.| .|-|--+.+|.|.|.++....
T Consensus 67 ~r~alvefedi~~akn~Vnfaa~n~i~i~gq~Al~NyStsq~i~R~g~es~~pN~VLl~TIlNp~YpItvDVly~Icnp~ 146 (494)
T KOG1456|consen 67 KRQALVEFEDIEGAKNCVNFAADNQIYIAGQQALFNYSTSQCIERPGDESATPNKVLLFTILNPQYPITVDVLYTICNPQ 146 (494)
T ss_pred cceeeeeeccccchhhheehhccCcccccCchhhcccchhhhhccCCCCCCCCCeEEEEEeecCccccchhhhhhhcCCC
Confidence 4468999999999998886 33466777777776654432221 11222333 446666789999999999999
Q ss_pred CCeEEEEEeecCCCCCcceEEEEEeCChHHHHHHHHhcCCeeeCC--eEEEEeecCCCCCCCC
Q 021295 81 GDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAG--AQVEVKKAEPKKPNLP 141 (314)
Q Consensus 81 G~v~~v~i~~~~~~g~~rG~afV~F~~~~~a~~a~~~l~~~~~~g--r~l~V~~a~~~~~~~~ 141 (314)
|+|.+|.|++. + --.|.|||++.++|++|.+.||+.+|.. ..|+|++|++.+.+..
T Consensus 147 GkVlRIvIfkk--n---gVQAmVEFdsv~~AqrAk~alNGADIYsGCCTLKIeyAkP~rlnV~ 204 (494)
T KOG1456|consen 147 GKVLRIVIFKK--N---GVQAMVEFDSVEVAQRAKAALNGADIYSGCCTLKIEYAKPTRLNVQ 204 (494)
T ss_pred CceEEEEEEec--c---ceeeEEeechhHHHHHHHhhcccccccccceeEEEEecCcceeeee
Confidence 99999999875 2 3479999999999999999999999865 7899999999876543
No 93
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=98.85 E-value=4.5e-09 Score=94.83 Aligned_cols=133 Identities=20% Similarity=0.381 Sum_probs=104.2
Q ss_pred CCCCCcccEEEEEECCHHHHHHHHHcc--CccCCcEEEEeecCCCCCC------CCCCCCcceEE-EcCCCCCCCHHHHH
Q 021295 4 RKTGQPRGFGFVTYADPSVVDKVIEDT--HIINGKQVEIKRTIPKGAV------GSKDFKTKKIF-VGGIPSSVNEDEFK 74 (314)
Q Consensus 4 ~~tg~~kG~aFV~f~~~~~a~~A~~~~--~~i~g~~i~v~~~~~~~~~------~~~~~~~~~l~-V~nLp~~~~e~~l~ 74 (314)
...-.+++++.|.|+..+++..|++.. ..+....+........... ........++| |.+|++++++++|+
T Consensus 124 ~~~~~sk~~~s~~f~~ks~~~~~l~~s~~~~~~~~~~~~dl~~~~~~~~~n~~~~~~~~~s~~~~~~~~~~f~~~~d~~~ 203 (285)
T KOG4210|consen 124 EDSLSSKGGLSVHFAGKSQFFAALEESGSKVLDGNKGEKDLNTRRGLRPKNKLSRLSSGPSDTIFFVGELDFSLTRDDLK 203 (285)
T ss_pred ccccccccceeeccccHHHHHHHHHhhhccccccccccCcccccccccccchhcccccCccccceeecccccccchHHHh
Confidence 356789999999999999999999822 2334444443333222211 11233445566 99999999999999
Q ss_pred HHHhccCCeEEEEEeecCCCCCcceEEEEEeCChHHHHHHHHhcCCeeeCCeEEEEeecCCCC
Q 021295 75 DFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVKKAEPKK 137 (314)
Q Consensus 75 ~~F~~~G~v~~v~i~~~~~~g~~rG~afV~F~~~~~a~~a~~~l~~~~~~gr~l~V~~a~~~~ 137 (314)
++|..+++|..|+++.++.++..++||+|+|.+...+..++.. +...+..++|.|....+..
T Consensus 204 ~~~~~~~~i~~~r~~~~~~s~~~kg~a~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 265 (285)
T KOG4210|consen 204 EHFVSSGEITSVRLPTDEESGDSKGFAYVDFSAGNSKKLALND-QTRSIGGRPLRLEEDEPRP 265 (285)
T ss_pred hhccCcCcceeeccCCCCCccchhhhhhhhhhhchhHHHHhhc-ccCcccCcccccccCCCCc
Confidence 9999999999999999999999999999999999999999987 7788889999988777653
No 94
>KOG1995 consensus Conserved Zn-finger protein [General function prediction only]
Probab=98.83 E-value=1.1e-08 Score=92.14 Aligned_cols=87 Identities=25% Similarity=0.406 Sum_probs=80.1
Q ss_pred CCCcceEEEcCCCCCCCHHHHHHHHhccCCeE--------EEEEeecCCCCCcceEEEEEeCChHHHHHHHHhcCCeeeC
Q 021295 53 DFKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQ--------EHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELA 124 (314)
Q Consensus 53 ~~~~~~l~V~nLp~~~~e~~l~~~F~~~G~v~--------~v~i~~~~~~g~~rG~afV~F~~~~~a~~a~~~l~~~~~~ 124 (314)
.....+|||-.||..+++++|.++|.+++.|+ .|+|.+|++|.++|+-|.|+|+++.+|++||+.++...|+
T Consensus 63 ~s~~~ti~v~g~~d~~~~~~~~~~f~qcg~ikrnK~t~kPki~~y~dkeT~~~KGeatvS~~D~~~akaai~~~agkdf~ 142 (351)
T KOG1995|consen 63 KSDNETIFVWGCPDSVCENDNADFFLQCGVIKRNKRTGKPKIKIYTDKETGAPKGEATVSYEDPPAAKAAIEWFAGKDFC 142 (351)
T ss_pred ccccccceeeccCccchHHHHHHHHhhcceeccCCCCCCcchhccccccccCcCCceeeeecChhhhhhhhhhhcccccc
Confidence 45567999999999999999999999999886 4889999999999999999999999999999999999999
Q ss_pred CeEEEEeecCCCCCC
Q 021295 125 GAQVEVKKAEPKKPN 139 (314)
Q Consensus 125 gr~l~V~~a~~~~~~ 139 (314)
+.+|+|.+|..+...
T Consensus 143 gn~ikvs~a~~r~~v 157 (351)
T KOG1995|consen 143 GNTIKVSLAERRTGV 157 (351)
T ss_pred CCCchhhhhhhccCc
Confidence 999999999877653
No 95
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=98.77 E-value=8.1e-08 Score=87.70 Aligned_cols=121 Identities=14% Similarity=0.224 Sum_probs=93.3
Q ss_pred cEEEEEECCHHHHHHHHH--ccCccCCcEEEEeecCCCC------CCCC-------------------------CCCCcc
Q 021295 11 GFGFVTYADPSVVDKVIE--DTHIINGKQVEIKRTIPKG------AVGS-------------------------KDFKTK 57 (314)
Q Consensus 11 G~aFV~f~~~~~a~~A~~--~~~~i~g~~i~v~~~~~~~------~~~~-------------------------~~~~~~ 57 (314)
=-|+|+++|..+|+.|++ +.+.+.++.|+|..+.... ..++ --+++.
T Consensus 336 d~ALIQmsd~~qAqLA~~hL~g~~l~gk~lrvt~SKH~~vqlp~egq~d~glT~dy~~spLhrfkkpgsKN~~ni~Ppsa 415 (492)
T KOG1190|consen 336 DNALIQMSDGQQAQLAMEHLEGHKLYGKKLRVTLSKHTNVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNYQNIFPPSA 415 (492)
T ss_pred cceeeeecchhHHHHHHHHhhcceecCceEEEeeccCccccCCCCCCccccccccCCCCchhhccCcccccccccCCchh
Confidence 359999999999999999 6678889999997654221 1111 013556
Q ss_pred eEEEcCCCCCCCHHHHHHHHhccCCeEEEEEeecCCCCCcceEEEEEeCChHHHHHHHHhcCCeeeCC-eEEEEeecCC
Q 021295 58 KIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAG-AQVEVKKAEP 135 (314)
Q Consensus 58 ~l~V~nLp~~~~e~~l~~~F~~~G~v~~v~i~~~~~~g~~rG~afV~F~~~~~a~~a~~~l~~~~~~g-r~l~V~~a~~ 135 (314)
+|.+.|+|.+++||+|+++|.+-|-++....... +.+-+|.+.+++.|+|..|+..+|.+.+.. +.|+|++.+.
T Consensus 416 tlHlsnip~svsee~lk~~f~~~g~~vkafkff~----kd~kmal~q~~sveeA~~ali~~hnh~lgen~hlRvSFSks 490 (492)
T KOG1190|consen 416 TLHLSNIPPSVSEEDLKNLFQEPGGQVKAFKFFQ----KDRKMALPQLESVEEAIQALIDLHNHYLGENHHLRVSFSKS 490 (492)
T ss_pred heeeccCCcccchhHHHHhhhcCCceEEeeeecC----CCcceeecccCChhHhhhhccccccccCCCCceEEEEeecc
Confidence 9999999999999999999998876544433322 224499999999999999999999988876 5899988764
No 96
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=98.73 E-value=1.1e-07 Score=80.34 Aligned_cols=86 Identities=17% Similarity=0.331 Sum_probs=68.2
Q ss_pred CCCcceEEEcCCCCCCCHHHHHHHHhccCCeEEEEEe-ecCCCCCcceEEEEEeCChHHHHHHHHhcCCeeeC---CeEE
Q 021295 53 DFKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIM-RDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELA---GAQV 128 (314)
Q Consensus 53 ~~~~~~l~V~nLp~~~~e~~l~~~F~~~G~v~~v~i~-~~~~~g~~rG~afV~F~~~~~a~~a~~~l~~~~~~---gr~l 128 (314)
....+||||.+||.++...||..+|..|---+...|. .++...-.+-+|||+|.+..+|++|+++||++.|+ ...|
T Consensus 31 ~~~VRTLFVSGLP~DvKpREiynLFR~f~GYEgslLK~Tsk~~~~~~pvaFatF~s~q~A~aamnaLNGvrFDpE~~stL 110 (284)
T KOG1457|consen 31 PGAVRTLFVSGLPNDVKPREIYNLFRRFHGYEGSLLKYTSKGDQVCKPVAFATFTSHQFALAAMNALNGVRFDPETGSTL 110 (284)
T ss_pred ccccceeeeccCCcccCHHHHHHHhccCCCccceeeeeccCCCccccceEEEEecchHHHHHHHHHhcCeeeccccCcee
Confidence 3457999999999999999999999998544444443 23333334579999999999999999999999986 4778
Q ss_pred EEeecCCCCC
Q 021295 129 EVKKAEPKKP 138 (314)
Q Consensus 129 ~V~~a~~~~~ 138 (314)
.|++|+....
T Consensus 111 hiElAKSNtK 120 (284)
T KOG1457|consen 111 HIELAKSNTK 120 (284)
T ss_pred EeeehhcCcc
Confidence 9988876544
No 97
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=98.71 E-value=1.1e-07 Score=71.49 Aligned_cols=79 Identities=15% Similarity=0.240 Sum_probs=67.9
Q ss_pred ceEEEcCCCCCCCHHHHHHHHhcc--CCeEEEEEeecCCCCCcceEEEEEeCChHHHHHHHHhcCCeeeC----CeEEEE
Q 021295 57 KKIFVGGIPSSVNEDEFKDFFMQF--GDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELA----GAQVEV 130 (314)
Q Consensus 57 ~~l~V~nLp~~~~e~~l~~~F~~~--G~v~~v~i~~~~~~g~~rG~afV~F~~~~~a~~a~~~l~~~~~~----gr~l~V 130 (314)
+||.|.|||...|.++|.+++.+. +...-+-|+.|..+..+.|||||.|.++++|.+..+.+++..+. .+.++|
T Consensus 2 TTvMirNIPn~~t~~~L~~~l~~~~~g~yDF~YLPiDf~~~~N~GYAFVNf~~~~~~~~F~~~f~g~~w~~~~s~Kvc~i 81 (97)
T PF04059_consen 2 TTVMIRNIPNKYTQEMLIQILDEHFKGKYDFFYLPIDFKNKCNLGYAFVNFTSPQAAIRFYKAFNGKKWPNFNSKKVCEI 81 (97)
T ss_pred eeEEEecCCCCCCHHHHHHHHHHhccCcceEEEeeeeccCCCceEEEEEEcCCHHHHHHHHHHHcCCccccCCCCcEEEE
Confidence 689999999999999999998654 66777889999889999999999999999999999998887764 355677
Q ss_pred eecCC
Q 021295 131 KKAEP 135 (314)
Q Consensus 131 ~~a~~ 135 (314)
.+|.-
T Consensus 82 ~yAri 86 (97)
T PF04059_consen 82 SYARI 86 (97)
T ss_pred ehhHh
Confidence 77654
No 98
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=98.68 E-value=1.7e-08 Score=86.25 Aligned_cols=72 Identities=26% Similarity=0.631 Sum_probs=66.1
Q ss_pred ceEEEcCCCCCCCHHHHHHHHhccCCeEEEEEeecCCCCCcceEEEEEeCChHHHHHHHHhcCCeeeCCeEEEEeecCCC
Q 021295 57 KKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVKKAEPK 136 (314)
Q Consensus 57 ~~l~V~nLp~~~~e~~l~~~F~~~G~v~~v~i~~~~~~g~~rG~afV~F~~~~~a~~a~~~l~~~~~~gr~l~V~~a~~~ 136 (314)
.+|||++||+.+.+.+|++||.+|++|.+|.|.. +|+||+|+++.+|+.||..||..+|.+-.|.|+++...
T Consensus 2 ~rv~vg~~~~~~~~~d~E~~f~~yg~~~d~~mk~--------gf~fv~fed~rda~Dav~~l~~~~l~~e~~vve~~r~~ 73 (216)
T KOG0106|consen 2 PRVYIGRLPYRARERDVERFFKGYGKIPDADMKN--------GFGFVEFEDPRDADDAVHDLDGKELCGERLVVEHARGK 73 (216)
T ss_pred CceeecccCCccchhHHHHHHhhccccccceeec--------ccceeccCchhhhhcccchhcCceecceeeeeeccccc
Confidence 4799999999999999999999999999998863 48999999999999999999999999988999888854
No 99
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=98.68 E-value=2.4e-07 Score=87.18 Aligned_cols=124 Identities=23% Similarity=0.398 Sum_probs=89.0
Q ss_pred Cccc---EEEEEECCHHHHHHHHHccC-------------ccCCcEEEEeecCCC-----CCCCCCCCCcceEEEcCCCC
Q 021295 8 QPRG---FGFVTYADPSVVDKVIEDTH-------------IINGKQVEIKRTIPK-----GAVGSKDFKTKKIFVGGIPS 66 (314)
Q Consensus 8 ~~kG---~aFV~f~~~~~a~~A~~~~~-------------~i~g~~i~v~~~~~~-----~~~~~~~~~~~~l~V~nLp~ 66 (314)
-+|| |+|+.|+++..+++.|..=. .+..+.|.|...... ......-.+.+||||+.||.
T Consensus 301 ppkGs~~YvflvFe~E~sV~~Ll~aC~~~~~~~yf~vss~~~k~k~VQIrPW~laDs~fv~d~sq~lDprrTVFVGgvpr 380 (520)
T KOG0129|consen 301 PPKGSYGYVFLVFEDERSVQSLLSACSEGEGNYYFKVSSPTIKDKEVQIRPWVLADSDFVLDHNQPIDPRRTVFVGGLPR 380 (520)
T ss_pred CCCCcccEEEEEecchHHHHHHHHHHhhcccceEEEEecCcccccceeEEeeEeccchhhhccCcccCccceEEecCCCC
Confidence 3566 99999999999888776211 122222222221111 11112345778999999999
Q ss_pred CCCHHHHHHHHh-ccCCeEEEEEeecCCCCCcceEEEEEeCChHHHHHHHHh----cCCeeeCCeEEEEee
Q 021295 67 SVNEDEFKDFFM-QFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAK----GNKLELAGAQVEVKK 132 (314)
Q Consensus 67 ~~~e~~l~~~F~-~~G~v~~v~i~~~~~~g~~rG~afV~F~~~~~a~~a~~~----l~~~~~~gr~l~V~~ 132 (314)
-++.+||..+|+ .||-|+-|-|=.|++-.-+||-+-|+|++..+-.+||++ |+..+|. ++|+|+.
T Consensus 381 pl~A~eLA~imd~lyGgV~yaGIDtD~k~KYPkGaGRVtFsnqqsYi~AIsarFvql~h~d~~-KRVEIkP 450 (520)
T KOG0129|consen 381 PLTAEELAMIMEDLFGGVLYVGIDTDPKLKYPKGAGRVTFSNQQAYIKAISARFVQLDHTDID-KRVEIKP 450 (520)
T ss_pred cchHHHHHHHHHHhcCceEEEEeccCcccCCCCCcceeeecccHHHHHHHhhheEEEeccccc-eeeeecc
Confidence 999999999998 789999999999988888999999999999999999985 3333333 3566654
No 100
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=98.68 E-value=1.4e-08 Score=95.93 Aligned_cols=76 Identities=25% Similarity=0.455 Sum_probs=67.9
Q ss_pred CCCCCCCcceEEEcCCCCCCCHHHHHHHHhccCCeEEEEEeecCCCCCcceEEEEEeCChHHHHHHHHhcCCeeeCCeEE
Q 021295 49 VGSKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQV 128 (314)
Q Consensus 49 ~~~~~~~~~~l~V~nLp~~~~e~~l~~~F~~~G~v~~v~i~~~~~~g~~rG~afV~F~~~~~a~~a~~~l~~~~~~gr~l 128 (314)
...++.+..+|+|-|||.++++++|+.+|+.||+|++|+.-+. .++.+||+|-|..+|++|+++|+..+|.++.|
T Consensus 68 p~~~~~~~~~L~v~nl~~~Vsn~~L~~~f~~yGeir~ir~t~~-----~~~~~~v~FyDvR~A~~Alk~l~~~~~~~~~~ 142 (549)
T KOG4660|consen 68 PSEKDMNQGTLVVFNLPRSVSNDTLLRIFGAYGEIREIRETPN-----KRGIVFVEFYDVRDAERALKALNRREIAGKRI 142 (549)
T ss_pred CCcccCccceEEEEecCCcCCHHHHHHHHHhhcchhhhhcccc-----cCceEEEEEeehHhHHHHHHHHHHHHhhhhhh
Confidence 3345677899999999999999999999999999999765444 57899999999999999999999999999888
Q ss_pred E
Q 021295 129 E 129 (314)
Q Consensus 129 ~ 129 (314)
+
T Consensus 143 k 143 (549)
T KOG4660|consen 143 K 143 (549)
T ss_pred c
Confidence 8
No 101
>KOG1855 consensus Predicted RNA-binding protein [General function prediction only]
Probab=98.67 E-value=3.3e-08 Score=90.71 Aligned_cols=95 Identities=13% Similarity=0.243 Sum_probs=75.9
Q ss_pred EEEeecCCCCCCCCCCCCcceEEEcCCCCCCCHHHHHHHHhccCCeEEEEEeec---CCCCC----------cceEEEEE
Q 021295 38 VEIKRTIPKGAVGSKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRD---HSTSR----------SRGFGFIT 104 (314)
Q Consensus 38 i~v~~~~~~~~~~~~~~~~~~l~V~nLp~~~~e~~l~~~F~~~G~v~~v~i~~~---~~~g~----------~rG~afV~ 104 (314)
-+|++..|.+....++.+.++|.+-|||.+-.-|.|.++|..+|.|+.|+|+.. ..+.+ .+=+|+||
T Consensus 213 kKVrRisPlp~~~~eel~srtivaenLP~Dh~~enl~kiFg~~G~IksIRIckPgaip~d~r~~~~~~~~~~tk~~AlvE 292 (484)
T KOG1855|consen 213 KKVRRISPLPEFDEEELPSRTIVAENLPLDHSYENLSKIFGTVGSIKSIRICKPGAIPEDVRGFPKKYFELQTKECALVE 292 (484)
T ss_pred ceeeecCCCCCccccccccceEEEecCCcchHHHHHHHHhhcccceeeeeecCCCCCCcccccCCccchhhhhhhhhhhh
Confidence 345566666667777889999999999999999999999999999999999976 33221 24579999
Q ss_pred eCChHHHHHHHHhcCCeeeCCeEEEEee
Q 021295 105 FDTEQAVDDLLAKGNKLELAGAQVEVKK 132 (314)
Q Consensus 105 F~~~~~a~~a~~~l~~~~~~gr~l~V~~ 132 (314)
|++.++|.+|.+.|+....+-.-|+|+.
T Consensus 293 ye~~~~A~KA~e~~~~e~~wr~glkvkL 320 (484)
T KOG1855|consen 293 YEEVEAARKARELLNPEQNWRMGLKVKL 320 (484)
T ss_pred hhhhHHHHHHHHhhchhhhhhhcchhhh
Confidence 9999999999999877665555555543
No 102
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=98.64 E-value=4.5e-08 Score=87.62 Aligned_cols=80 Identities=11% Similarity=0.278 Sum_probs=70.5
Q ss_pred CcceEEEcCCCCCCCHHHHHHHHhccC--CeEEEEEeecCCCCCcceEEEEEeCChHHHHHHHHhcCCeeeCCeEEEEee
Q 021295 55 KTKKIFVGGIPSSVNEDEFKDFFMQFG--DVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVKK 132 (314)
Q Consensus 55 ~~~~l~V~nLp~~~~e~~l~~~F~~~G--~v~~v~i~~~~~~g~~rG~afV~F~~~~~a~~a~~~l~~~~~~gr~l~V~~ 132 (314)
...++||+||-|++|++||.+.+...| +|.+++++.++.++++||||+|...+..++++.++.|...+|.++.-.|..
T Consensus 79 rk~~~YvGNL~W~TTD~DL~~A~~S~G~~~~~dmKFFENR~NGQSKG~AL~~~~SdAa~Kq~MeiLP~k~iHGQ~P~V~~ 158 (498)
T KOG4849|consen 79 RKYCCYVGNLLWYTTDADLLKALQSTGLAQFADMKFFENRTNGQSKGYALLVLNSDAAVKQTMEILPTKTIHGQSPTVLS 158 (498)
T ss_pred ceEEEEecceeEEeccHHHHHHHHhhhHHHHhhhhhhhcccCCcccceEEEEecchHHHHHHHHhcccceecCCCCeeec
Confidence 345899999999999999999998776 577899999999999999999999999999999999999999997766654
Q ss_pred cC
Q 021295 133 AE 134 (314)
Q Consensus 133 a~ 134 (314)
..
T Consensus 159 ~N 160 (498)
T KOG4849|consen 159 YN 160 (498)
T ss_pred cc
Confidence 43
No 103
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=98.57 E-value=7.8e-08 Score=87.10 Aligned_cols=126 Identities=16% Similarity=0.282 Sum_probs=93.6
Q ss_pred CCCCcccEEEEEECCHHHHHHHHH-ccCccCCcEEEEeecCCCCCCC--------C----CCCCcceEEEcCCCCCCCHH
Q 021295 5 KTGQPRGFGFVTYADPSVVDKVIE-DTHIINGKQVEIKRTIPKGAVG--------S----KDFKTKKIFVGGIPSSVNED 71 (314)
Q Consensus 5 ~tg~~kG~aFV~f~~~~~a~~A~~-~~~~i~g~~i~v~~~~~~~~~~--------~----~~~~~~~l~V~nLp~~~~e~ 71 (314)
..++-.+.+.|.|.|+|.-+-|++ ..+.+..+.|+|-.+...+-.. . ....--.|.+.+||+++++.
T Consensus 97 ~qgrRnge~lvrf~d~e~RdlalkRhkhh~g~ryievYka~ge~f~~iagg~s~e~~~flsk~~qvivRmRGLPfdat~~ 176 (508)
T KOG1365|consen 97 AQGRRNGEALVRFVDPEGRDLALKRHKHHMGTRYIEVYKATGEEFLKIAGGTSNEAAPFLSKENQVIVRMRGLPFDATAL 176 (508)
T ss_pred hhhccccceEEEecCchhhhhhhHhhhhhccCCceeeeccCchhheEecCCccccCCCCCCcccceEEEecCCCCCcchH
Confidence 456788999999999999999998 5567788888886554432111 1 11223467789999999999
Q ss_pred HHHHHHhccC----CeEEEEEeecCCCCCcceEEEEEeCChHHHHHHHHhcCCeeeCCeEEEEee
Q 021295 72 EFKDFFMQFG----DVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVKK 132 (314)
Q Consensus 72 ~l~~~F~~~G----~v~~v~i~~~~~~g~~rG~afV~F~~~~~a~~a~~~l~~~~~~gr~l~V~~ 132 (314)
|+.+||..-- .++.|-+++ +.+++..|-|||.|..+++|+.||.+ |...|.-|.|++..
T Consensus 177 dVv~FF~~~cpv~~g~egvLFV~-rpdgrpTGdAFvlfa~ee~aq~aL~k-hrq~iGqRYIElFR 239 (508)
T KOG1365|consen 177 DVVEFFGPPCPVTGGTEGVLFVT-RPDGRPTGDAFVLFACEEDAQFALRK-HRQNIGQRYIELFR 239 (508)
T ss_pred HHHHhcCCCCcccCCccceEEEE-CCCCCcccceEEEecCHHHHHHHHHH-HHHHHhHHHHHHHH
Confidence 9999996432 334454444 35788999999999999999999998 77777777776643
No 104
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=98.57 E-value=3.3e-07 Score=81.08 Aligned_cols=113 Identities=22% Similarity=0.484 Sum_probs=81.9
Q ss_pred CCCCCCCcccEEEEEECCHHHHHHHHH--ccCccCCcEEEEeecC----CCCCCC----------------CCCCCcceE
Q 021295 2 KDRKTGQPRGFGFVTYADPSVVDKVIE--DTHIINGKQVEIKRTI----PKGAVG----------------SKDFKTKKI 59 (314)
Q Consensus 2 ~d~~tg~~kG~aFV~f~~~~~a~~A~~--~~~~i~g~~i~v~~~~----~~~~~~----------------~~~~~~~~l 59 (314)
+|+.|+++++||||+|.++++|..|++ +...+.++.|.|.+.. ++.... ........+
T Consensus 149 ~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (306)
T COG0724 149 RDRETGKSRGFAFVEFESEESAEKAIEELNGKELEGRPLRVQKAQPASQPRSELSNNLDASFAKKLSRGKALLLEKSDNL 228 (306)
T ss_pred eccccCccCceEEEEecCHHHHHHHHHHcCCCeECCceeEeeccccccccccccccccchhhhcccccccccccccccee
Confidence 567899999999999999999999999 3358899999999854 222211 123456789
Q ss_pred EEcCCCCCCCHHHHHHHHhccCCeEEEEEeecCCCCCcceEEEEEeCChHHHHHH
Q 021295 60 FVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDL 114 (314)
Q Consensus 60 ~V~nLp~~~~e~~l~~~F~~~G~v~~v~i~~~~~~g~~rG~afV~F~~~~~a~~a 114 (314)
++.+++..++++++..+|..++.+..+.+...........+.++.++....+..+
T Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 283 (306)
T COG0724 229 YVGNLPLKTAEEELADLFKSRGDIVRASLPPSKDGKIPKSRSFVGNEASKDALES 283 (306)
T ss_pred eccccccccchhHHHHhccccccceeeeccCCCCCcccccccccchhHHHhhhhh
Confidence 9999999999999999999999997777766544333333333333333333333
No 105
>KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only]
Probab=98.49 E-value=2.5e-07 Score=89.74 Aligned_cols=85 Identities=21% Similarity=0.364 Sum_probs=75.9
Q ss_pred CCCcceEEEcCCCCCCCHHHHHHHHhccCCeEEEEEeecCC---CCCcceEEEEEeCChHHHHHHHHhcCCeeeCCeEEE
Q 021295 53 DFKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHS---TSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVE 129 (314)
Q Consensus 53 ~~~~~~l~V~nLp~~~~e~~l~~~F~~~G~v~~v~i~~~~~---~g~~rG~afV~F~~~~~a~~a~~~l~~~~~~gr~l~ 129 (314)
++.++.|||.||+..++|++|...|-.||+|..|+|+..+. ..+.+-|+||.|.+..++++|++.|+++.+....|+
T Consensus 171 DP~TTNlyv~Nlnpsv~E~~ll~tfGrfgPlasvKimwpRtEeEk~r~r~cgfvafmnR~D~era~k~lqg~iv~~~e~K 250 (877)
T KOG0151|consen 171 DPQTTNLYVGNLNPSVDENFLLRTFGRFGPLASVKIMWPRTEEEKRRERNCGFVAFMNRADAERALKELQGIIVMEYEMK 250 (877)
T ss_pred CCcccceeeecCCccccHHHHHHHhcccCcccceeeecccchhhhccccccceeeehhhhhHHHHHHHhcceeeeeeeee
Confidence 56788999999999999999999999999999999996543 345677999999999999999999999999999999
Q ss_pred EeecCCCC
Q 021295 130 VKKAEPKK 137 (314)
Q Consensus 130 V~~a~~~~ 137 (314)
+-|.+...
T Consensus 251 ~gWgk~V~ 258 (877)
T KOG0151|consen 251 LGWGKAVP 258 (877)
T ss_pred eccccccc
Confidence 99986543
No 106
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=98.47 E-value=1.9e-06 Score=78.96 Aligned_cols=81 Identities=20% Similarity=0.308 Sum_probs=71.3
Q ss_pred cceEEEcCCCCC-CCHHHHHHHHhccCCeEEEEEeecCCCCCcceEEEEEeCChHHHHHHHHhcCCeeeCCeEEEEeecC
Q 021295 56 TKKIFVGGIPSS-VNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVKKAE 134 (314)
Q Consensus 56 ~~~l~V~nLp~~-~~e~~l~~~F~~~G~v~~v~i~~~~~~g~~rG~afV~F~~~~~a~~a~~~l~~~~~~gr~l~V~~a~ 134 (314)
+..|.|.||..+ +|++.|..+|.-||+|.+|+|+.++.+ -|.|.+.+...|+-|++.|++..|.+++|+|.+.+
T Consensus 297 n~vllvsnln~~~VT~d~LftlFgvYGdVqRVkil~nkkd-----~ALIQmsd~~qAqLA~~hL~g~~l~gk~lrvt~SK 371 (492)
T KOG1190|consen 297 NVVLLVSNLNEEAVTPDVLFTLFGVYGDVQRVKILYNKKD-----NALIQMSDGQQAQLAMEHLEGHKLYGKKLRVTLSK 371 (492)
T ss_pred ceEEEEecCchhccchhHHHHHHhhhcceEEEEeeecCCc-----ceeeeecchhHHHHHHHHhhcceecCceEEEeecc
Confidence 467888998875 799999999999999999999988643 79999999999999999999999999999999887
Q ss_pred CCCCCCC
Q 021295 135 PKKPNLP 141 (314)
Q Consensus 135 ~~~~~~~ 141 (314)
-.....+
T Consensus 372 H~~vqlp 378 (492)
T KOG1190|consen 372 HTNVQLP 378 (492)
T ss_pred CccccCC
Confidence 6655443
No 107
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=98.47 E-value=6.5e-08 Score=95.51 Aligned_cols=111 Identities=15% Similarity=0.269 Sum_probs=93.6
Q ss_pred CCCCCcccEEEEEECCHHHHHHHHH-ccCccCCcEEEEeecCCCCCCCCCCCCcceEEEcCCCCCCCHHHHHHHHhccCC
Q 021295 4 RKTGQPRGFGFVTYADPSVVDKVIE-DTHIINGKQVEIKRTIPKGAVGSKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGD 82 (314)
Q Consensus 4 ~~tg~~kG~aFV~f~~~~~a~~A~~-~~~~i~g~~i~v~~~~~~~~~~~~~~~~~~l~V~nLp~~~~e~~l~~~F~~~G~ 82 (314)
+.+++.||+|+|+|.+++++.+||. +...+. ...+|+|.|+|+..|.++|+.++.+++.
T Consensus 703 ~n~~~~rG~~Y~~F~~~~~~~aaV~f~d~~~~--------------------gK~~v~i~g~pf~gt~e~~k~l~~~~gn 762 (881)
T KOG0128|consen 703 KNEKRFRGKAYVEFLKPEHAGAAVAFRDSCFF--------------------GKISVAISGPPFQGTKEELKSLASKTGN 762 (881)
T ss_pred hhccccccceeeEeecCCchhhhhhhhhhhhh--------------------hhhhhheeCCCCCCchHHHHhhccccCC
Confidence 4578999999999999999999998 211111 1357899999999999999999999999
Q ss_pred eEEEEEeecCCCCCcceEEEEEeCChHHHHHHHHhcCCeeeCCeEEEEeecCC
Q 021295 83 VQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVKKAEP 135 (314)
Q Consensus 83 v~~v~i~~~~~~g~~rG~afV~F~~~~~a~~a~~~l~~~~~~gr~l~V~~a~~ 135 (314)
+++++++.. ..+++++.|+|.|.++.++.+++..++...+..+.+.|....+
T Consensus 763 ~~~~~~vt~-r~gkpkg~a~v~y~~ea~~s~~~~s~d~~~~rE~~~~v~vsnp 814 (881)
T KOG0128|consen 763 VTSLRLVTV-RAGKPKGKARVDYNTEADASRKVASVDVAGKRENNGEVQVSNP 814 (881)
T ss_pred ccccchhhh-hccccccceeccCCCcchhhhhcccchhhhhhhcCccccccCC
Confidence 999997776 4789999999999999999999998888778777777766444
No 108
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=98.47 E-value=3e-07 Score=74.86 Aligned_cols=47 Identities=32% Similarity=0.674 Sum_probs=41.4
Q ss_pred CCCCCCCCcccEEEEEECCHHHHHHHHH--ccCccCCcEEEEeecCCCC
Q 021295 1 MKDRKTGQPRGFGFVTYADPSVVDKVIE--DTHIINGKQVEIKRTIPKG 47 (314)
Q Consensus 1 m~d~~tg~~kG~aFV~f~~~~~a~~A~~--~~~~i~g~~i~v~~~~~~~ 47 (314)
++|+.|+++|+||||+|+++++|++||+ +.++|+++.|+|+++.++.
T Consensus 67 ~~d~~tg~~kGfaFV~F~~~e~A~~Al~~lng~~i~Gr~l~V~~a~~~~ 115 (144)
T PLN03134 67 IVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRVNPANDRP 115 (144)
T ss_pred EecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEeCCcCC
Confidence 4688999999999999999999999998 4568999999999887553
No 109
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=98.39 E-value=4.5e-07 Score=87.76 Aligned_cols=124 Identities=14% Similarity=0.056 Sum_probs=93.2
Q ss_pred ccEEEEEECCHHHHHHHHH-ccCccCCcEEEEeecCCCCC-----------------------------------CCCCC
Q 021295 10 RGFGFVTYADPSVVDKVIE-DTHIINGKQVEIKRTIPKGA-----------------------------------VGSKD 53 (314)
Q Consensus 10 kG~aFV~f~~~~~a~~A~~-~~~~i~g~~i~v~~~~~~~~-----------------------------------~~~~~ 53 (314)
.|-++|+|...+++++|++ +...+..+.+++.......+ .....
T Consensus 352 tG~~~v~f~~~~~~q~A~~rn~~~~~~R~~q~~P~g~~~~~~a~~~~~~~~~~~~~~~hg~p~~~pr~~~~~gq~vp~P~ 431 (944)
T KOG4307|consen 352 TGRKTVMFTPQAPFQNAFTRNPSDDVNRPFQTGPPGNLGRNGAPPFQAGVPPPVIQNNHGRPIAPPRAMVRPGQNVPFPG 431 (944)
T ss_pred CCceEEEecCcchHHHHHhcCchhhhhcceeecCCCccccccCccccccCCCCcccccCCCCCCCcccccCCCCCCCCCC
Confidence 7889999999999999999 44444556665533211110 00122
Q ss_pred CCcceEEEcCCCCCCCHHHHHHHHhccCCeEE-EEEeecCCCCCcceEEEEEeCChHHHHHHHHhcCCeeeCCeEEEEee
Q 021295 54 FKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQE-HQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVKK 132 (314)
Q Consensus 54 ~~~~~l~V~nLp~~~~e~~l~~~F~~~G~v~~-v~i~~~~~~g~~rG~afV~F~~~~~a~~a~~~l~~~~~~gr~l~V~~ 132 (314)
....+|||..||..+++.++.++|.+.-.|++ |.|.+. .+.+.+..|||+|..++++.+|+..-+++-+..+.|+|..
T Consensus 432 ~ag~~lyv~~lP~~t~~~~~v~~f~~~~~Ved~I~lt~~-P~~~~~~~afv~F~~~~a~~~a~~~~~k~y~G~r~irv~s 510 (944)
T KOG4307|consen 432 GAGGALYVFQLPVMTPIVPPVNKFMGAAAVEDFIELTRL-PTDLLRPAAFVAFIHPTAPLTASSVKTKFYPGHRIIRVDS 510 (944)
T ss_pred CccceEEeccCCccccccchhhhhhhhhhhhheeEeccC-CcccccchhhheeccccccchhhhcccccccCceEEEeec
Confidence 34569999999999999999999999888887 555544 5778889999999999888888877688888888888865
Q ss_pred cC
Q 021295 133 AE 134 (314)
Q Consensus 133 a~ 134 (314)
..
T Consensus 511 i~ 512 (944)
T KOG4307|consen 511 IA 512 (944)
T ss_pred hh
Confidence 43
No 110
>KOG0149 consensus Predicted RNA-binding protein SEB4 (RRM superfamily) [General function prediction only]
Probab=98.34 E-value=3.1e-07 Score=78.42 Aligned_cols=44 Identities=30% Similarity=0.703 Sum_probs=39.8
Q ss_pred CCCCCCCCcccEEEEEECCHHHHHHHHHccC-ccCCcEEEEeecC
Q 021295 1 MKDRKTGQPRGFGFVTYADPSVVDKVIEDTH-IINGKQVEIKRTI 44 (314)
Q Consensus 1 m~d~~tg~~kG~aFV~f~~~~~a~~A~~~~~-~i~g~~i~v~~~~ 44 (314)
|+||+|++||||+||+|+|.++|++|+++.+ .|++++..++.+.
T Consensus 45 itd~~t~rskGyGfVTf~d~~aa~rAc~dp~piIdGR~aNcnlA~ 89 (247)
T KOG0149|consen 45 ITDKNTGRSKGYGFVTFRDAEAATRACKDPNPIIDGRKANCNLAS 89 (247)
T ss_pred EeccCCccccceeeEEeecHHHHHHHhcCCCCcccccccccchhh
Confidence 6899999999999999999999999999665 7899999888764
No 111
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=98.33 E-value=1.9e-06 Score=62.01 Aligned_cols=70 Identities=13% Similarity=0.274 Sum_probs=47.1
Q ss_pred ceEEEcCCCCCCCHHHHH----HHHhcc-CCeEEEEEeecCCCCCcceEEEEEeCChHHHHHHHHhcCCeeeCCeEEEEe
Q 021295 57 KKIFVGGIPSSVNEDEFK----DFFMQF-GDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVK 131 (314)
Q Consensus 57 ~~l~V~nLp~~~~e~~l~----~~F~~~-G~v~~v~i~~~~~~g~~rG~afV~F~~~~~a~~a~~~l~~~~~~gr~l~V~ 131 (314)
..|+|.|||.+.+...|+ +++..+ |+|..|. .+.|+|.|.+++.|+.|++.|++.++-+++|.|+
T Consensus 3 s~L~V~NLP~~~d~~~I~~RL~qLsdNCGGkVl~v~----------~~tAilrF~~~~~A~RA~KRmegEdVfG~kI~v~ 72 (90)
T PF11608_consen 3 SLLYVSNLPTNKDPSSIKNRLRQLSDNCGGKVLSVS----------GGTAILRFPNQEFAERAQKRMEGEDVFGNKISVS 72 (90)
T ss_dssp EEEEEES--TTS-HHHHHHHHHHHHHTTT--EEE------------TT-EEEEESSHHHHHHHHHHHTT--SSSS--EEE
T ss_pred cEEEEecCCCCCCHHHHHHHHHHHhhccCCEEEEEe----------CCEEEEEeCCHHHHHHHHHhhcccccccceEEEE
Confidence 468999999999887765 555566 4676652 2479999999999999999999999999999999
Q ss_pred ecCCC
Q 021295 132 KAEPK 136 (314)
Q Consensus 132 ~a~~~ 136 (314)
+....
T Consensus 73 ~~~~~ 77 (90)
T PF11608_consen 73 FSPKN 77 (90)
T ss_dssp SS--S
T ss_pred EcCCc
Confidence 87544
No 112
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=98.18 E-value=4e-05 Score=69.63 Aligned_cols=114 Identities=14% Similarity=0.195 Sum_probs=85.4
Q ss_pred ccEEEEEECCHHHHHHHHH--ccCccCCcEEEEeecCCCCCCC---------------------------------CCCC
Q 021295 10 RGFGFVTYADPSVVDKVIE--DTHIINGKQVEIKRTIPKGAVG---------------------------------SKDF 54 (314)
Q Consensus 10 kG~aFV~f~~~~~a~~A~~--~~~~i~g~~i~v~~~~~~~~~~---------------------------------~~~~ 54 (314)
.+-|.||+.|..+++.|++ +...+-+.+|.++.+....... .-..
T Consensus 325 ~gtamVemgd~~aver~v~hLnn~~lfG~kl~v~~SkQ~~v~~~~pflLpDgSpSfKdys~SkNnRFssp~qAsKNrIq~ 404 (494)
T KOG1456|consen 325 PGTAMVEMGDAYAVERAVTHLNNIPLFGGKLNVCVSKQNFVSPVQPFLLPDGSPSFKDYSGSKNNRFSSPEQASKNRIQP 404 (494)
T ss_pred cceeEEEcCcHHHHHHHHHHhccCccccceEEEeeccccccccCCceecCCCCcchhhcccccccccCChhHhhcccccC
Confidence 4679999999999999999 4445677888886543221000 0134
Q ss_pred CcceEEEcCCCCCCCHHHHHHHHhccCC-eEEEEEeecCCCCCcceEEEEEeCChHHHHHHHHhcCCeeeCC
Q 021295 55 KTKKIFVGGIPSSVNEDEFKDFFMQFGD-VQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAG 125 (314)
Q Consensus 55 ~~~~l~V~nLp~~~~e~~l~~~F~~~G~-v~~v~i~~~~~~g~~rG~afV~F~~~~~a~~a~~~l~~~~~~g 125 (314)
++++|..-|.|..+|||.|.++|..... ..+|+|...+ +.++. -..+||++.++|.+||.+||...|.+
T Consensus 405 Ps~vLHffNaP~~vtEe~l~~i~nek~v~~~svkvFp~k-serSs-sGllEfe~~s~Aveal~~~NH~pi~~ 474 (494)
T KOG1456|consen 405 PSNVLHFFNAPLGVTEEQLIGICNEKDVPPTSVKVFPLK-SERSS-SGLLEFENKSDAVEALMKLNHYPIEG 474 (494)
T ss_pred CcceeEEecCCCccCHHHHHHHhhhcCCCcceEEeeccc-ccccc-cceeeeehHHHHHHHHHHhccccccC
Confidence 6788999999999999999999976543 4567777654 32222 46899999999999999999988876
No 113
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=98.09 E-value=4.6e-06 Score=64.06 Aligned_cols=68 Identities=26% Similarity=0.496 Sum_probs=43.3
Q ss_pred eEEEcCCCCCCCHHHHHHHHhccCCeEEEEEeecCCCCCcceEEEEEeCChHHHHHHHHhcC-----CeeeCCeEEEEe
Q 021295 58 KIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGN-----KLELAGAQVEVK 131 (314)
Q Consensus 58 ~l~V~nLp~~~~e~~l~~~F~~~G~v~~v~i~~~~~~g~~rG~afV~F~~~~~a~~a~~~l~-----~~~~~gr~l~V~ 131 (314)
.|.|.+|+..++.++|+++|++|++|.-|++.+... .|+|.|.++++|++|++++. .+.|.+..+.++
T Consensus 3 il~~~g~~~~~~re~iK~~f~~~g~V~yVD~~~G~~------~g~VRf~~~~~A~~a~~~~~~~~~~~~~i~~~~~~~~ 75 (105)
T PF08777_consen 3 ILKFSGLGEPTSREDIKEAFSQFGEVAYVDFSRGDT------EGYVRFKTPEAAQKALEKLKEANDGKLKIKGKEVTLE 75 (105)
T ss_dssp EEEEEE--SS--HHHHHHHT-SS--EEEEE--TT-S------EEEEEESS---HHHHHHHHHHTTTS-B-TTSSSEEEE
T ss_pred EEEEecCCCCcCHHHHHHHHHhcCCcceEEecCCCC------EEEEEECCcchHHHHHHHHHhccCCceEEcCceEEEE
Confidence 578889999999999999999999999999986532 79999999999999998753 345556555554
No 114
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=97.99 E-value=1.8e-05 Score=77.02 Aligned_cols=75 Identities=12% Similarity=0.254 Sum_probs=65.4
Q ss_pred ceEEEcCCCCCCCHHHHHHHHhccCCeEE-EEEeecCCCCCcceEEEEEeCChHHHHHHHHhcCCeeeCCeEEEEee
Q 021295 57 KKIFVGGIPSSVNEDEFKDFFMQFGDVQE-HQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVKK 132 (314)
Q Consensus 57 ~~l~V~nLp~~~~e~~l~~~F~~~G~v~~-v~i~~~~~~g~~rG~afV~F~~~~~a~~a~~~l~~~~~~gr~l~V~~ 132 (314)
+.|-|.|+|++++-+||.+||..|-.+.. |.|.+ .+.+++.|-|.|.|++.++|.+|.+.|++..|..++|+|..
T Consensus 868 ~V~~~~n~Pf~v~l~dI~~FF~dY~~~p~sI~~r~-nd~G~pTGe~mvAfes~~eAr~A~~dl~~~~i~nr~V~l~i 943 (944)
T KOG4307|consen 868 RVLSCNNFPFDVTLEDIVEFFNDYEPDPNSIRIRR-NDDGVPTGECMVAFESQEEARRASMDLDGQKIRNRVVSLRI 943 (944)
T ss_pred eEEEecCCCccccHHHHHHHhcccccCCCceeEee-cCCCCcccceeEeecCHHHHHhhhhccccCcccceeEEEEe
Confidence 47899999999999999999999965543 44444 47899999999999999999999999999999999998864
No 115
>smart00361 RRM_1 RNA recognition motif.
Probab=97.99 E-value=1.2e-05 Score=57.00 Aligned_cols=39 Identities=21% Similarity=0.375 Sum_probs=31.7
Q ss_pred CCCCC--CCcccEEEEEECCHHHHHHHHHc--cCccCCcEEEE
Q 021295 2 KDRKT--GQPRGFGFVTYADPSVVDKVIED--THIINGKQVEI 40 (314)
Q Consensus 2 ~d~~t--g~~kG~aFV~f~~~~~a~~A~~~--~~~i~g~~i~v 40 (314)
+|+.| +++|||+||+|.+.++|++|++. ...+.++.|.+
T Consensus 27 ~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~g~~~~gr~l~~ 69 (70)
T smart00361 27 IDNVGYENHKRGNVYITFERSEDAARAIVDLNGRYFDGRTVKA 69 (70)
T ss_pred eCCCCCCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEe
Confidence 45666 99999999999999999999994 34667777654
No 116
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=97.92 E-value=3e-05 Score=69.55 Aligned_cols=84 Identities=19% Similarity=0.416 Sum_probs=64.9
Q ss_pred CCCCcceEEEcCCCCCCCHHH----H--HHHHhccCCeEEEEEeecCCC-CCcceE--EEEEeCChHHHHHHHHhcCCee
Q 021295 52 KDFKTKKIFVGGIPSSVNEDE----F--KDFFMQFGDVQEHQIMRDHST-SRSRGF--GFITFDTEQAVDDLLAKGNKLE 122 (314)
Q Consensus 52 ~~~~~~~l~V~nLp~~~~e~~----l--~~~F~~~G~v~~v~i~~~~~~-g~~rG~--afV~F~~~~~a~~a~~~l~~~~ 122 (314)
...+..-|||-.||..+..|+ | .++|.+||+|+.|.|-+...+ ...... .+|+|.+.|+|..||.++++..
T Consensus 110 RVvQKNLvYVigi~pkva~Ee~~~vLk~~eyFGQyGkI~KIvvNkkt~s~nst~~h~gvYITy~~kedAarcIa~vDgs~ 189 (480)
T COG5175 110 RVVQKNLVYVIGIPPKVADEEVAPVLKRHEYFGQYGKIKKIVVNKKTSSLNSTASHAGVYITYSTKEDAARCIAEVDGSL 189 (480)
T ss_pred eeeecceeEEecCCCCCCcccccccccchhhhhhccceeEEEecccccccccccccceEEEEecchHHHHHHHHHhcccc
Confidence 445667889999999887666 3 388999999999888754311 111122 4999999999999999999999
Q ss_pred eCCeEEEEeecCC
Q 021295 123 LAGAQVEVKKAEP 135 (314)
Q Consensus 123 ~~gr~l~V~~a~~ 135 (314)
++++.|+..+-..
T Consensus 190 ~DGr~lkatYGTT 202 (480)
T COG5175 190 LDGRVLKATYGTT 202 (480)
T ss_pred ccCceEeeecCch
Confidence 9999999876544
No 117
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=97.88 E-value=3.2e-05 Score=51.63 Aligned_cols=52 Identities=17% Similarity=0.489 Sum_probs=41.8
Q ss_pred ceEEEcCCCCCCCHHHHHHHHhccCCeEEEEEeecCCCCCcceEEEEEeCChHHHHHHH
Q 021295 57 KKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLL 115 (314)
Q Consensus 57 ~~l~V~nLp~~~~e~~l~~~F~~~G~v~~v~i~~~~~~g~~rG~afV~F~~~~~a~~a~ 115 (314)
+.|-|.+.+.+..++.| ++|+.||+|+++.+... .-+.+|+|+++.+|++||
T Consensus 2 ~wI~V~Gf~~~~~~~vl-~~F~~fGeI~~~~~~~~------~~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 2 TWISVSGFPPDLAEEVL-EHFASFGEIVDIYVPES------TNWMYLKYKSRKDAEKAL 53 (53)
T ss_pred cEEEEEeECchHHHHHH-HHHHhcCCEEEEEcCCC------CcEEEEEECCHHHHHhhC
Confidence 56788888877775544 58889999999988732 238999999999999985
No 118
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=97.86 E-value=1.2e-06 Score=80.45 Aligned_cols=120 Identities=23% Similarity=0.405 Sum_probs=98.4
Q ss_pred ccEEEEEECCHHHHHHHHHcc---CccCCcEEEEeecCCCCCCCCCCCCcceEEEcCCCCCCCHHHHHHHHhccCCeEEE
Q 021295 10 RGFGFVTYADPSVVDKVIEDT---HIINGKQVEIKRTIPKGAVGSKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEH 86 (314)
Q Consensus 10 kG~aFV~f~~~~~a~~A~~~~---~~i~g~~i~v~~~~~~~~~~~~~~~~~~l~V~nLp~~~~e~~l~~~F~~~G~v~~v 86 (314)
.+||||.+.+..+|.+|++.. .++.+++++++.++++.. .+++|-|.|+|....|+.|..++..|+.|+.+
T Consensus 37 ~gyafvd~pdq~wa~kaie~~sgk~elqGkr~e~~~sv~kkq------rsrk~Qirnippql~wevld~Ll~qyg~ve~~ 110 (584)
T KOG2193|consen 37 SGYAFVDCPDQQWANKAIETLSGKVELQGKRQEVEHSVPKKQ------RSRKIQIRNIPPQLQWEVLDSLLAQYGTVENC 110 (584)
T ss_pred cceeeccCCchhhhhhhHHhhchhhhhcCceeeccchhhHHH------HhhhhhHhcCCHHHHHHHHHHHHhccCCHhHh
Confidence 589999999999999999833 378899999998887644 35668999999999999999999999999887
Q ss_pred EEee-cCCCCCcceEEEEEeCChHHHHHHHHhcCCeeeCCeEEEEeecCCCCCC
Q 021295 87 QIMR-DHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVKKAEPKKPN 139 (314)
Q Consensus 87 ~i~~-~~~~g~~rG~afV~F~~~~~a~~a~~~l~~~~~~gr~l~V~~a~~~~~~ 139 (314)
.++. +.+| -..-|++.+.+.++.||++|+...|....++|.+.......
T Consensus 111 eqvnt~~et----avvnvty~~~~~~~~ai~kl~g~Q~en~~~k~~YiPdeq~~ 160 (584)
T KOG2193|consen 111 EQVNTDSET----AVVNVTYSAQQQHRQAIHKLNGPQLENQHLKVGYIPDEQNA 160 (584)
T ss_pred hhhccchHH----HHHHHHHHHHHHHHHHHHhhcchHhhhhhhhcccCchhhhh
Confidence 7642 2222 23457888899999999999999999999999887665443
No 119
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=97.86 E-value=2e-05 Score=78.71 Aligned_cols=120 Identities=16% Similarity=0.265 Sum_probs=92.1
Q ss_pred CCCcccEEEEEECCHHHHHHHHHc--cCccCCcEEEEeecCCCCCCCCCCCCcceEEEcCCCCCCCHHHHHHHHhccCCe
Q 021295 6 TGQPRGFGFVTYADPSVVDKVIED--THIINGKQVEIKRTIPKGAVGSKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGDV 83 (314)
Q Consensus 6 tg~~kG~aFV~f~~~~~a~~A~~~--~~~i~g~~i~v~~~~~~~~~~~~~~~~~~l~V~nLp~~~~e~~l~~~F~~~G~v 83 (314)
-++-.-|+||.|.+.+.+..|+.. ...|..-.+++....+ +...++.|||+.|..|+....|..+|..||.|
T Consensus 409 ~~~esa~~f~~~~n~dmtp~ak~e~s~~~I~~g~~r~glG~~------kst~ttr~~sgglg~w~p~~~l~r~fd~fGpi 482 (975)
T KOG0112|consen 409 IKTESAYAFVSLLNTDMTPSAKFEESGPLIGNGTHRIGLGQP------KSTPTTRLQSGGLGPWSPVSRLNREFDRFGPI 482 (975)
T ss_pred CCcccchhhhhhhccccCcccchhhcCCccccCccccccccc------ccccceeeccCCCCCCChHHHHHHHhhccCcc
Confidence 345566899999998887776652 2233333333333322 45567899999999999999999999999999
Q ss_pred EEEEEeecCCCCCcceEEEEEeCChHHHHHHHHhcCCeeeCC--eEEEEeecCCCC
Q 021295 84 QEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAG--AQVEVKKAEPKK 137 (314)
Q Consensus 84 ~~v~i~~~~~~g~~rG~afV~F~~~~~a~~a~~~l~~~~~~g--r~l~V~~a~~~~ 137 (314)
..|.+-.. .-||+|.+++...+++|++.|....|.+ +.|.|.+|.+..
T Consensus 483 r~Idy~hg------q~yayi~yes~~~aq~a~~~~rgap~G~P~~r~rvdla~~~~ 532 (975)
T KOG0112|consen 483 RIIDYRHG------QPYAYIQYESPPAAQAATHDMRGAPLGGPPRRLRVDLASPPG 532 (975)
T ss_pred eeeecccC------CcceeeecccCccchhhHHHHhcCcCCCCCcccccccccCCC
Confidence 99887543 3399999999999999999998888875 778998887654
No 120
>KOG0108 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA15 [RNA processing and modification]
Probab=97.85 E-value=8.6e-06 Score=77.29 Aligned_cols=46 Identities=28% Similarity=0.697 Sum_probs=40.3
Q ss_pred CCCCCCCCcccEEEEEECCHHHHHHHHHcc--CccCCcEEEEeecCCC
Q 021295 1 MKDRKTGQPRGFGFVTYADPSVVDKVIEDT--HIINGKQVEIKRTIPK 46 (314)
Q Consensus 1 m~d~~tg~~kG~aFV~f~~~~~a~~A~~~~--~~i~g~~i~v~~~~~~ 46 (314)
|.|+.|+++|||+|++|.++++++.|++++ .++.+++|+|.++...
T Consensus 51 v~D~~tG~~~G~~f~~~~~~~~~~~a~~~lNg~~~~gr~l~v~~~~~~ 98 (435)
T KOG0108|consen 51 VYDRETGKPKGFGFCEFTDEETAERAIRNLNGAEFNGRKLRVNYASNR 98 (435)
T ss_pred cccccCCCcCceeeEecCchhhHHHHHHhcCCcccCCceEEeeccccc
Confidence 468999999999999999999999999954 4899999999876543
No 121
>KOG4208 consensus Nucleolar RNA-binding protein NIFK [General function prediction only]
Probab=97.81 E-value=2.5e-05 Score=65.66 Aligned_cols=44 Identities=20% Similarity=0.470 Sum_probs=36.4
Q ss_pred CCCCCCCcccEEEEEECCHHHHHHHHHcc--CccCCcEEEEeecCC
Q 021295 2 KDRKTGQPRGFGFVTYADPSVVDKVIEDT--HIINGKQVEIKRTIP 45 (314)
Q Consensus 2 ~d~~tg~~kG~aFV~f~~~~~a~~A~~~~--~~i~g~~i~v~~~~~ 45 (314)
|++.||.||+||||+|++++.|+.|.+.| ..+-++.|.+....|
T Consensus 84 RnkrTGNSKgYAFVEFEs~eVA~IaAETMNNYLl~e~lL~c~vmpp 129 (214)
T KOG4208|consen 84 RNKRTGNSKGYAFVEFESEEVAKIAAETMNNYLLMEHLLECHVMPP 129 (214)
T ss_pred cccccCCcCceEEEEeccHHHHHHHHHHhhhhhhhhheeeeEEeCc
Confidence 78899999999999999999999998844 466677777765544
No 122
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=97.81 E-value=8.6e-07 Score=87.80 Aligned_cols=119 Identities=13% Similarity=0.162 Sum_probs=84.1
Q ss_pred EEEEEECCHHHHHHHHH-ccCccCCcEEEEeecCCCCCCCCCC------CCcceEEEcCCCCCCCHHHHHHHHhccCCeE
Q 021295 12 FGFVTYADPSVVDKVIE-DTHIINGKQVEIKRTIPKGAVGSKD------FKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQ 84 (314)
Q Consensus 12 ~aFV~f~~~~~a~~A~~-~~~~i~g~~i~v~~~~~~~~~~~~~------~~~~~l~V~nLp~~~~e~~l~~~F~~~G~v~ 84 (314)
+.+++++....++.|.. ....+..+.+.+..+.+++...... ....++||.||+..+.++||.+.|..++.|+
T Consensus 616 ~~~~~~s~~~~~esat~pa~~~~a~~~~av~~ad~~~~~~~~kvs~n~~R~~~~~fvsnl~~~~~~~dl~~~~~~~~~~e 695 (881)
T KOG0128|consen 616 QQQKVQSKHGSAESATVPAGGALANRSAAVGLADAEEKEENFKVSPNEIRDLIKIFVSNLSPKMSEEDLSERFSPSGTIE 695 (881)
T ss_pred hhhhhhccccchhhcccccccccCCccccCCCCCchhhhhccCcCchHHHHHHHHHHhhcchhhcCchhhhhcCccchhh
Confidence 55666666666666665 3334445555554444443222211 2335889999999999999999999999888
Q ss_pred EEEEeecCCCCCcceEEEEEeCChHHHHHHHHhcCCeeeCCeEEEE
Q 021295 85 EHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEV 130 (314)
Q Consensus 85 ~v~i~~~~~~g~~rG~afV~F~~~~~a~~a~~~l~~~~~~gr~l~V 130 (314)
.|.|.....+.+.+|+|+|+|.+++.+.+||+....+.+....|-|
T Consensus 696 ~vqi~~h~n~~~~rG~~Y~~F~~~~~~~aaV~f~d~~~~gK~~v~i 741 (881)
T KOG0128|consen 696 VVQIVIHKNEKRFRGKAYVEFLKPEHAGAAVAFRDSCFFGKISVAI 741 (881)
T ss_pred hHHHHHHhhccccccceeeEeecCCchhhhhhhhhhhhhhhhhhhe
Confidence 7777766678889999999999999999999876665555433333
No 123
>KOG4207 consensus Predicted splicing factor, SR protein superfamily [RNA processing and modification]
Probab=97.76 E-value=2e-05 Score=66.17 Aligned_cols=42 Identities=29% Similarity=0.678 Sum_probs=37.0
Q ss_pred CCCCCCCcccEEEEEECCHHHHHHHHH--ccCccCCcEEEEeec
Q 021295 2 KDRKTGQPRGFGFVTYADPSVVDKVIE--DTHIINGKQVEIKRT 43 (314)
Q Consensus 2 ~d~~tg~~kG~aFV~f~~~~~a~~A~~--~~~~i~g~~i~v~~~ 43 (314)
+|+.|..++|||||.|.+..+|++||+ +..+|+++.|.|+.+
T Consensus 47 rdr~Tr~sRgFaFVrf~~k~daedA~damDG~~ldgRelrVq~a 90 (256)
T KOG4207|consen 47 RDRYTRQSRGFAFVRFHDKRDAEDALDAMDGAVLDGRELRVQMA 90 (256)
T ss_pred cccccccccceeEEEeeecchHHHHHHhhcceeeccceeeehhh
Confidence 689999999999999999999999998 445888999888754
No 124
>KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]
Probab=97.75 E-value=3.3e-05 Score=68.25 Aligned_cols=43 Identities=21% Similarity=0.550 Sum_probs=38.3
Q ss_pred CCCCCCCCcccEEEEEECCHHHHHHHHH--ccCccCCcEEEEeec
Q 021295 1 MKDRKTGQPRGFGFVTYADPSVVDKVIE--DTHIINGKQVEIKRT 43 (314)
Q Consensus 1 m~d~~tg~~kG~aFV~f~~~~~a~~A~~--~~~~i~g~~i~v~~~ 43 (314)
|+|+.|++|||||||+|+++.+...|.+ +...|+++.|.|+..
T Consensus 134 V~d~vTgkskGYAFIeye~erdm~~AYK~adG~~Idgrri~VDvE 178 (335)
T KOG0113|consen 134 VRDKVTGKSKGYAFIEYEHERDMKAAYKDADGIKIDGRRILVDVE 178 (335)
T ss_pred eeecccCCccceEEEEeccHHHHHHHHHhccCceecCcEEEEEec
Confidence 5799999999999999999999999999 445889999998764
No 125
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=97.72 E-value=9.7e-05 Score=69.92 Aligned_cols=67 Identities=28% Similarity=0.552 Sum_probs=50.9
Q ss_pred CCCcceEEEcCCCCCCCHHHHHHHHhccCCeEEEEEeec--CCCCCcce---EEEEEeCChHHHHHHHHhcC
Q 021295 53 DFKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRD--HSTSRSRG---FGFITFDTEQAVDDLLAKGN 119 (314)
Q Consensus 53 ~~~~~~l~V~nLp~~~~e~~l~~~F~~~G~v~~v~i~~~--~~~g~~rG---~afV~F~~~~~a~~a~~~l~ 119 (314)
..-+++|||+.||++++|++|.+.|..||.|+.-+-.+. +.---++| |+|+.|+++.++++.|.++.
T Consensus 256 ~~~S~KVFvGGlp~dise~~i~~~F~~FGs~~VdWP~k~~~~~~~ppkGs~~YvflvFe~E~sV~~Ll~aC~ 327 (520)
T KOG0129|consen 256 PRYSRKVFVGGLPWDITEAQINASFGQFGSVKVDWPGKANSRGRAPPKGSYGYVFLVFEDERSVQSLLSACS 327 (520)
T ss_pred cccccceeecCCCccccHHHHHhhcccccceEeecCCCccccccCCCCCcccEEEEEecchHHHHHHHHHHh
Confidence 345679999999999999999999999998763222111 11123567 99999999999998888753
No 126
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=97.68 E-value=7.8e-05 Score=63.24 Aligned_cols=47 Identities=21% Similarity=0.493 Sum_probs=41.1
Q ss_pred CCCCCCCcccEEEEEECCHHHHHHHHHccC--ccCCcEEEEeecCCCCC
Q 021295 2 KDRKTGQPRGFGFVTYADPSVVDKVIEDTH--IINGKQVEIKRTIPKGA 48 (314)
Q Consensus 2 ~d~~tg~~kG~aFV~f~~~~~a~~A~~~~~--~i~g~~i~v~~~~~~~~ 48 (314)
.|.++.+.|+|+||+|+..|+|.+||.+++ ++-++.|+|..+.|...
T Consensus 44 lDyesqkHRgFgFVefe~aEDAaaAiDNMnesEL~GrtirVN~AkP~ki 92 (298)
T KOG0111|consen 44 LDYESQKHRGFGFVEFEEAEDAAAAIDNMNESELFGRTIRVNLAKPEKI 92 (298)
T ss_pred cchhcccccceeEEEeeccchhHHHhhcCchhhhcceeEEEeecCCccc
Confidence 467899999999999999999999999554 88899999999887643
No 127
>KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only]
Probab=97.66 E-value=4.9e-05 Score=68.06 Aligned_cols=52 Identities=23% Similarity=0.505 Sum_probs=42.2
Q ss_pred CCCcccEEEEEECCHHHHHHHHHccC--ccCCcEEEEeecCCCCCCCCCCCCcc
Q 021295 6 TGQPRGFGFVTYADPSVVDKVIEDTH--IINGKQVEIKRTIPKGAVGSKDFKTK 57 (314)
Q Consensus 6 tg~~kG~aFV~f~~~~~a~~A~~~~~--~i~g~~i~v~~~~~~~~~~~~~~~~~ 57 (314)
.--||||+||+|++++||++|-+++| .|.+++|+|..++++-..++++....
T Consensus 132 ERGSKGFGFVTmen~~dadRARa~LHgt~VEGRkIEVn~ATarV~n~K~~v~p~ 185 (376)
T KOG0125|consen 132 ERGSKGFGFVTMENPADADRARAELHGTVVEGRKIEVNNATARVHNKKKKVLPY 185 (376)
T ss_pred cCCCCccceEEecChhhHHHHHHHhhcceeeceEEEEeccchhhccCCcccCCC
Confidence 44689999999999999999999555 89999999999988755555444333
No 128
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=97.64 E-value=1.5e-05 Score=67.43 Aligned_cols=111 Identities=22% Similarity=0.361 Sum_probs=82.4
Q ss_pred CCCCCCCCcccEEEEEECCHHHHHHHHHccC--ccCCcEEEEeecCCCCCCCCCCCCcceEEEcC----CCCCCCHHHHH
Q 021295 1 MKDRKTGQPRGFGFVTYADPSVVDKVIEDTH--IINGKQVEIKRTIPKGAVGSKDFKTKKIFVGG----IPSSVNEDEFK 74 (314)
Q Consensus 1 m~d~~tg~~kG~aFV~f~~~~~a~~A~~~~~--~i~g~~i~v~~~~~~~~~~~~~~~~~~l~V~n----Lp~~~~e~~l~ 74 (314)
|.+-.+.+.| ||||.|+++..+.-|++.++ .+.++.+. .+++.++ |...++++.+.
T Consensus 41 ip~~~d~~~k-Fa~v~f~~E~sv~~a~~L~ng~~l~~~e~q-----------------~~~r~G~shapld~r~~~ei~~ 102 (267)
T KOG4454|consen 41 IPSGQDQEQK-FAYVFFPNENSVQLAGQLENGDDLEEDEEQ-----------------RTLRCGNSHAPLDERVTEEILY 102 (267)
T ss_pred CCCCccCCCc-eeeeecccccchhhhhhhcccchhccchhh-----------------cccccCCCcchhhhhcchhhhe
Confidence 4455678888 99999999999999998433 33333333 2344445 66778899999
Q ss_pred HHHhccCCeEEEEEeecCCCCCcceEEEEEeCChHHHHHHHHhcCCeeeCCeEEEE
Q 021295 75 DFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEV 130 (314)
Q Consensus 75 ~~F~~~G~v~~v~i~~~~~~g~~rG~afV~F~~~~~a~~a~~~l~~~~~~gr~l~V 130 (314)
+.|+..+.|+.+++.++.+ ++++-+.||++...-++-.++.....+.+--+++.+
T Consensus 103 ~v~s~a~p~~~~R~~~~~d-~rnrn~~~~~~qr~~~~P~~~~~y~~l~~~~~~~~~ 157 (267)
T KOG4454|consen 103 EVFSQAGPIEGVRIPTDND-GRNRNFGFVTYQRLCAVPFALDLYQGLELFQKKVTI 157 (267)
T ss_pred eeecccCCCCCcccccccc-CCccCccchhhhhhhcCcHHhhhhcccCcCCCCccc
Confidence 9999999999999998854 788889999988777777777776665554444444
No 129
>KOG0115 consensus RNA-binding protein p54nrb (RRM superfamily) [RNA processing and modification]
Probab=97.59 E-value=0.00015 Score=62.96 Aligned_cols=93 Identities=14% Similarity=0.293 Sum_probs=73.1
Q ss_pred ccCccCCcEEEEeecCCCCCCCCCCCCcceEEEcCCCCCCCHHHHHHHHhccCCeEEEEEeecCCCCCcceEEEEEeCCh
Q 021295 29 DTHIINGKQVEIKRTIPKGAVGSKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTE 108 (314)
Q Consensus 29 ~~~~i~g~~i~v~~~~~~~~~~~~~~~~~~l~V~nLp~~~~e~~l~~~F~~~G~v~~v~i~~~~~~g~~rG~afV~F~~~ 108 (314)
+.....++.+.|..+.. ..|+|.||+.-++.|.|.+.|+.|++|+...++.| ...++.+-.+|+|...
T Consensus 15 d~~~~~~~~lr~rfa~~-----------a~l~V~nl~~~~sndll~~~f~~fg~~e~av~~vD-~r~k~t~eg~v~~~~k 82 (275)
T KOG0115|consen 15 DGRFPKGRSLRVRFAMH-----------AELYVVNLMQGASNDLLEQAFRRFGPIERAVAKVD-DRGKPTREGIVEFAKK 82 (275)
T ss_pred CCCCCCCCceEEEeecc-----------ceEEEEecchhhhhHHHHHhhhhcCccchheeeec-ccccccccchhhhhcc
Confidence 55567888888887652 57999999999999999999999999998777777 4567788899999999
Q ss_pred HHHHHHHHhcCC----eeeCCeEEEEeec
Q 021295 109 QAVDDLLAKGNK----LELAGAQVEVKKA 133 (314)
Q Consensus 109 ~~a~~a~~~l~~----~~~~gr~l~V~~a 133 (314)
-.+.+|+..++. .++..+++-|..+
T Consensus 83 ~~a~~a~rr~~~~g~~~~~~~~p~~VeP~ 111 (275)
T KOG0115|consen 83 PNARKAARRCREGGFGGTTGGRPVGVEPM 111 (275)
T ss_pred hhHHHHHHHhccCccccCCCCCccCCChh
Confidence 999999987633 2234455544433
No 130
>KOG0126 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=97.57 E-value=2e-05 Score=64.97 Aligned_cols=46 Identities=24% Similarity=0.553 Sum_probs=40.2
Q ss_pred CCCCCCCCcccEEEEEECCHHHHHHHHHccC--ccCCcEEEEeecCCC
Q 021295 1 MKDRKTGQPRGFGFVTYADPSVVDKVIEDTH--IINGKQVEIKRTIPK 46 (314)
Q Consensus 1 m~d~~tg~~kG~aFV~f~~~~~a~~A~~~~~--~i~g~~i~v~~~~~~ 46 (314)
|+|+.||+||||||+.|+|..+...|+.+++ .|.+++|+|++....
T Consensus 68 iRDk~TGKSKGFaFLcYEDQRSTILAVDN~NGiki~gRtirVDHv~~Y 115 (219)
T KOG0126|consen 68 IRDKKTGKSKGFAFLCYEDQRSTILAVDNLNGIKILGRTIRVDHVSNY 115 (219)
T ss_pred EecCCCCcccceEEEEecCccceEEEEeccCCceecceeEEeeecccc
Confidence 7899999999999999999999999998554 788999999875544
No 131
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=97.57 E-value=0.00037 Score=66.62 Aligned_cols=82 Identities=13% Similarity=0.178 Sum_probs=65.5
Q ss_pred CCCcceEEEcCCCCCC--CH----HHHHHHHhccCCeEEEEEeecCCCCCcceEEEEEeCChHHHHHHHHhcCCeeeC-C
Q 021295 53 DFKTKKIFVGGIPSSV--NE----DEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELA-G 125 (314)
Q Consensus 53 ~~~~~~l~V~nLp~~~--~e----~~l~~~F~~~G~v~~v~i~~~~~~g~~rG~afV~F~~~~~a~~a~~~l~~~~~~-g 125 (314)
+.-...|+|.++|.-- .. ..|.++|+++|+|+.+.++.+.+++ .+||.|++|.+..+|+.|++.||+..|+ .
T Consensus 55 eg~D~vVvv~g~PvV~~~rl~klk~vl~kvfsk~gk~vn~~~P~~e~gg-tkG~lf~E~~~~~~A~~aVK~l~G~~ldkn 133 (698)
T KOG2314|consen 55 EGFDSVVVVDGAPVVGPARLEKLKKVLTKVFSKAGKIVNMYYPIDEEGG-TKGYLFVEYASMRDAKKAVKSLNGKRLDKN 133 (698)
T ss_pred CCcceEEEECCCcccChhHHHHHHHHHHHHHHhhccccceeeccCccCC-eeeEEEEEecChhhHHHHHHhcccceeccc
Confidence 3456789999999743 22 3456889999999999999886555 9999999999999999999999998876 5
Q ss_pred eEEEEeecCC
Q 021295 126 AQVEVKKAEP 135 (314)
Q Consensus 126 r~l~V~~a~~ 135 (314)
+.+.|..-++
T Consensus 134 Htf~v~~f~d 143 (698)
T KOG2314|consen 134 HTFFVRLFKD 143 (698)
T ss_pred ceEEeehhhh
Confidence 7777764433
No 132
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=97.52 E-value=0.00045 Score=52.34 Aligned_cols=78 Identities=26% Similarity=0.408 Sum_probs=52.3
Q ss_pred CcceEEEcCCCCCCCHHHHHHHHhccCCeEEEE-EeecC------CCCCcceEEEEEeCChHHHHHHHHhcCCeeeCCe-
Q 021295 55 KTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQ-IMRDH------STSRSRGFGFITFDTEQAVDDLLAKGNKLELAGA- 126 (314)
Q Consensus 55 ~~~~l~V~nLp~~~~e~~l~~~F~~~G~v~~v~-i~~~~------~~g~~rG~afV~F~~~~~a~~a~~~l~~~~~~gr- 126 (314)
....|.|=+.|.+ ....|.++|++||+|.+.. +.++. ..........|+|+++.+|++||.+ |+..|.+.
T Consensus 5 ~~~wVtVFGfp~~-~~~~Vl~~F~~~G~Ile~~~~~~~~~~~~~~~~~~~~NWi~I~Y~~~~~A~rAL~~-NG~i~~g~~ 82 (100)
T PF05172_consen 5 SETWVTVFGFPPS-ASNQVLRHFSSFGTILEHFEVLRSSSGINPYPIPSGGNWIHITYDNPLSAQRALQK-NGTIFSGSL 82 (100)
T ss_dssp GCCEEEEE---GG-GHHHHHHHHHCCS-EECEEGGG----------E-CCTTEEEEEESSHHHHHHHHTT-TTEEETTCE
T ss_pred CCeEEEEEccCHH-HHHHHHHHHHhcceEEEeecccccccccccccCCCCCCEEEEECCCHHHHHHHHHh-CCeEEcCcE
Confidence 4566888889888 5578889999999998774 11100 0011234889999999999999999 99999885
Q ss_pred EEEEeecC
Q 021295 127 QVEVKKAE 134 (314)
Q Consensus 127 ~l~V~~a~ 134 (314)
.|.|.+++
T Consensus 83 mvGV~~~~ 90 (100)
T PF05172_consen 83 MVGVKPCD 90 (100)
T ss_dssp EEEEEE-H
T ss_pred EEEEEEcH
Confidence 45677764
No 133
>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]
Probab=97.52 E-value=3.7e-05 Score=66.75 Aligned_cols=64 Identities=13% Similarity=0.250 Sum_probs=52.3
Q ss_pred HHHHHHHh-ccCCeEEEEEeecCCCCCcceEEEEEeCChHHHHHHHHhcCCeeeCCeEEEEeecCC
Q 021295 71 DEFKDFFM-QFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVKKAEP 135 (314)
Q Consensus 71 ~~l~~~F~-~~G~v~~v~i~~~~~~g~~rG~afV~F~~~~~a~~a~~~l~~~~~~gr~l~V~~a~~ 135 (314)
|||..+|+ +|++|+++.|..+. ....+|-++|.|..+++|++|++.||+-++.+++|...+..-
T Consensus 83 Ed~f~E~~~kygEiee~~Vc~Nl-~~hl~GNVYV~f~~Ee~ae~a~~~lnnRw~~G~pi~ae~~pv 147 (260)
T KOG2202|consen 83 EDVFTELEDKYGEIEELNVCDNL-GDHLVGNVYVKFRSEEDAEAALEDLNNRWYNGRPIHAELSPV 147 (260)
T ss_pred HHHHHHHHHHhhhhhhhhhhccc-chhhhhhhhhhcccHHHHHHHHHHHcCccccCCcceeeecCc
Confidence 34444454 89999999888764 345688999999999999999999999999999998876543
No 134
>KOG0130 consensus RNA-binding protein RBM8/Tsunagi (RRM superfamily) [General function prediction only]
Probab=97.43 E-value=0.00016 Score=56.88 Aligned_cols=47 Identities=26% Similarity=0.461 Sum_probs=40.8
Q ss_pred CCCCCCCcccEEEEEECCHHHHHHHHHcc--CccCCcEEEEeecCCCCC
Q 021295 2 KDRKTGQPRGFGFVTYADPSVVDKVIEDT--HIINGKQVEIKRTIPKGA 48 (314)
Q Consensus 2 ~d~~tg~~kG~aFV~f~~~~~a~~A~~~~--~~i~g~~i~v~~~~~~~~ 48 (314)
.|+.|+-.||||+|+|++.++|++|+..+ .++.++.|.|+|+..+.+
T Consensus 106 LDRRtGy~KGYaLvEYet~keAq~A~~~~Ng~~ll~q~v~VDw~Fv~gp 154 (170)
T KOG0130|consen 106 LDRRTGYVKGYALVEYETLKEAQAAIDALNGAELLGQNVSVDWCFVKGP 154 (170)
T ss_pred cccccccccceeeeehHhHHHHHHHHHhccchhhhCCceeEEEEEecCC
Confidence 47789999999999999999999999944 488999999999876544
No 135
>KOG0121 consensus Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) [RNA processing and modification]
Probab=97.40 E-value=0.00021 Score=55.66 Aligned_cols=43 Identities=21% Similarity=0.386 Sum_probs=37.8
Q ss_pred CCCCCCCcccEEEEEECCHHHHHHHHH--ccCccCCcEEEEeecC
Q 021295 2 KDRKTGQPRGFGFVTYADPSVVDKVIE--DTHIINGKQVEIKRTI 44 (314)
Q Consensus 2 ~d~~tg~~kG~aFV~f~~~~~a~~A~~--~~~~i~g~~i~v~~~~ 44 (314)
.|+.|..+.|||||+|-+.++|+.||+ +.+.++.+.|.++|..
T Consensus 70 Ldr~kktpCGFCFVeyy~~~dA~~AlryisgtrLddr~ir~D~D~ 114 (153)
T KOG0121|consen 70 LDRFKKTPCGFCFVEYYSRDDAEDALRYISGTRLDDRPIRIDWDA 114 (153)
T ss_pred cccCCcCccceEEEEEecchhHHHHHHHhccCcccccceeeeccc
Confidence 488899999999999999999999999 6667888888887754
No 136
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=97.37 E-value=0.0012 Score=45.29 Aligned_cols=57 Identities=14% Similarity=0.330 Sum_probs=46.7
Q ss_pred CCcceEEEcCCCCCCCHHHHHHHHhcc---CCeEEEEEeecCCCCCcceEEEEEeCChHHHHHHHHhc
Q 021295 54 FKTKKIFVGGIPSSVNEDEFKDFFMQF---GDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKG 118 (314)
Q Consensus 54 ~~~~~l~V~nLp~~~~e~~l~~~F~~~---G~v~~v~i~~~~~~g~~rG~afV~F~~~~~a~~a~~~l 118 (314)
....+|+|.+|. +++.+||+.+|..| .....|..+.|. -|-|.|.++++|.+||.+|
T Consensus 3 ~rpeavhirGvd-~lsT~dI~~y~~~y~~~~~~~~IEWIdDt-------ScNvvf~d~~~A~~AL~~L 62 (62)
T PF10309_consen 3 IRPEAVHIRGVD-ELSTDDIKAYFSEYFDEEGPFRIEWIDDT-------SCNVVFKDEETAARALVAL 62 (62)
T ss_pred ceeceEEEEcCC-CCCHHHHHHHHHHhcccCCCceEEEecCC-------cEEEEECCHHHHHHHHHcC
Confidence 446789999984 58889999999988 235578888774 5999999999999999875
No 137
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=97.37 E-value=0.00032 Score=64.29 Aligned_cols=79 Identities=16% Similarity=0.199 Sum_probs=60.6
Q ss_pred cceEEEcCCCCCCCHHHHHHHHhccCCeEEEEEeecCCC---CCcceEEEEEeCChHHHHHHHHhcCCeeeCCeEEEEee
Q 021295 56 TKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHST---SRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVKK 132 (314)
Q Consensus 56 ~~~l~V~nLp~~~~e~~l~~~F~~~G~v~~v~i~~~~~~---g~~rG~afV~F~~~~~a~~a~~~l~~~~~~gr~l~V~~ 132 (314)
...|-|.||..+++.++|+.+|.-.|+|.++.|+.+..+ ....-.|||.|.+..++..|..+-|.+.|+-..|++.+
T Consensus 7 ~~vIqvanispsat~dqm~tlFg~lGkI~elrlyp~~~d~~~pv~sRtcyVkf~d~~sv~vaQhLtntvfvdraliv~p~ 86 (479)
T KOG4676|consen 7 LGVIQVANISPSATKDQMQTLFGNLGKIPELRLYPNVDDSKIPVISRTCYVKFLDSQSVTVAQHLTNTVFVDRALIVRPY 86 (479)
T ss_pred CceeeecccCchhhHHHHHHHHhhccccccccccCCCCCccCcceeeeEEEeccCCcceeHHhhhccceeeeeeEEEEec
Confidence 347899999999999999999999999999999875332 22345899999999999888776555555544455544
Q ss_pred cC
Q 021295 133 AE 134 (314)
Q Consensus 133 a~ 134 (314)
..
T Consensus 87 ~~ 88 (479)
T KOG4676|consen 87 GD 88 (479)
T ss_pred CC
Confidence 43
No 138
>PF07292 NID: Nmi/IFP 35 domain (NID); InterPro: IPR009909 This entry represents a domain of approximately 90 residues that is tandemly repeated within interferon-induced 35 kDa protein (IFP 35) and the homologous N-myc-interactor (Nmi). This domain mediates Nmi-Nmi protein interactions and subcellular localisation [].
Probab=97.37 E-value=0.00028 Score=51.97 Aligned_cols=66 Identities=18% Similarity=0.384 Sum_probs=47.1
Q ss_pred EEEEECCHHHHHHHHH-ccC--ccCCcEEEEeecCCCCCC-----CCCCCCcceEEEcCCCCCCCHHHHHHHHh
Q 021295 13 GFVTYADPSVVDKVIE-DTH--IINGKQVEIKRTIPKGAV-----GSKDFKTKKIFVGGIPSSVNEDEFKDFFM 78 (314)
Q Consensus 13 aFV~f~~~~~a~~A~~-~~~--~i~g~~i~v~~~~~~~~~-----~~~~~~~~~l~V~nLp~~~~e~~l~~~F~ 78 (314)
|+|+|.++..|++.++ ..+ .++..++.|+.+.-.... -......++|.|.+||..++|++|+|.++
T Consensus 1 AlITF~e~~VA~~i~~~~~~~v~l~~~~~~V~v~P~~~~~~~k~qv~~~vs~rtVlvsgip~~l~ee~l~D~Le 74 (88)
T PF07292_consen 1 ALITFEEEGVAQRILKKKKHPVPLEDCCVRVKVSPVTLGHLQKFQVFSGVSKRTVLVSGIPDVLDEEELRDKLE 74 (88)
T ss_pred CEEEeCcHHHHHHHHhCCEEEEEECCEEEEEEEEeEecCCceEEEEEEcccCCEEEEeCCCCCCChhhheeeEE
Confidence 7899999999999998 333 455666665543221111 11456788999999999999999988643
No 139
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=97.37 E-value=0.00016 Score=59.44 Aligned_cols=40 Identities=25% Similarity=0.582 Sum_probs=34.7
Q ss_pred CcccEEEEEECCHHHHHHHHH--ccCccCCcEEEEeecCCCC
Q 021295 8 QPRGFGFVTYADPSVVDKVIE--DTHIINGKQVEIKRTIPKG 47 (314)
Q Consensus 8 ~~kG~aFV~f~~~~~a~~A~~--~~~~i~g~~i~v~~~~~~~ 47 (314)
.+.|||||||+++.+|++|+. +..+|.+..|.|+++.-..
T Consensus 45 nPPGfAFVEFed~RDA~DAvr~LDG~~~cG~r~rVE~S~G~~ 86 (195)
T KOG0107|consen 45 NPPGFAFVEFEDPRDAEDAVRYLDGKDICGSRIRVELSTGRP 86 (195)
T ss_pred cCCCceEEeccCcccHHHHHhhcCCccccCceEEEEeecCCc
Confidence 688999999999999999998 5568999999999876543
No 140
>smart00360 RRM RNA recognition motif.
Probab=97.37 E-value=0.00038 Score=47.80 Aligned_cols=38 Identities=26% Similarity=0.679 Sum_probs=30.4
Q ss_pred CCCCCCcccEEEEEECCHHHHHHHHHcc--CccCCcEEEE
Q 021295 3 DRKTGQPRGFGFVTYADPSVVDKVIEDT--HIINGKQVEI 40 (314)
Q Consensus 3 d~~tg~~kG~aFV~f~~~~~a~~A~~~~--~~i~g~~i~v 40 (314)
++.+++++++|||+|.+.++|++|++.+ ..+.++.|.|
T Consensus 31 ~~~~~~~~~~a~v~f~~~~~a~~a~~~~~~~~~~~~~~~v 70 (71)
T smart00360 31 DKDTGKSKGFAFVEFESEEDAEKALEALNGKELDGRPLKV 70 (71)
T ss_pred CCCCCCCCceEEEEeCCHHHHHHHHHHcCCCeeCCcEEEe
Confidence 4457899999999999999999999843 4566666654
No 141
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=97.32 E-value=0.00049 Score=46.18 Aligned_cols=34 Identities=32% Similarity=0.620 Sum_probs=30.3
Q ss_pred ccEEEEEECCHHHHHHHHH--ccCccCCcEEEEeec
Q 021295 10 RGFGFVTYADPSVVDKVIE--DTHIINGKQVEIKRT 43 (314)
Q Consensus 10 kG~aFV~f~~~~~a~~A~~--~~~~i~g~~i~v~~~ 43 (314)
+++|||+|.+.++|++|++ +...+.+++|.|+++
T Consensus 21 ~~~a~V~f~~~~~A~~a~~~l~~~~~~g~~l~V~~a 56 (56)
T PF13893_consen 21 RGFAFVEFASVEDAQKAIEQLNGRQFNGRPLKVSYA 56 (56)
T ss_dssp TTEEEEEESSHHHHHHHHHHHTTSEETTEEEEEEEE
T ss_pred CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEC
Confidence 6999999999999999998 556889999998864
No 142
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=97.30 E-value=0.0003 Score=49.36 Aligned_cols=37 Identities=30% Similarity=0.654 Sum_probs=29.8
Q ss_pred CCCCCCCcccEEEEEECCHHHHHHHHHcc--CccCCcEEE
Q 021295 2 KDRKTGQPRGFGFVTYADPSVVDKVIEDT--HIINGKQVE 39 (314)
Q Consensus 2 ~d~~tg~~kG~aFV~f~~~~~a~~A~~~~--~~i~g~~i~ 39 (314)
+++. ++++++|||+|+++++|++|++.. ..+.++.|+
T Consensus 32 ~~~~-~~~~~~a~v~f~~~~~a~~al~~~~~~~~~g~~l~ 70 (70)
T PF14259_consen 32 KNKD-GQSRGFAFVEFSSEEDAKRALELLNGKEIDGRKLR 70 (70)
T ss_dssp ESTT-SSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred eeec-cccCCEEEEEeCCHHHHHHHHHHCCCcEECCEEcC
Confidence 3444 899999999999999999999933 467777663
No 143
>KOG3152 consensus TBP-binding protein, activator of basal transcription (contains rrm motif) [Transcription]
Probab=97.27 E-value=0.00011 Score=63.78 Aligned_cols=73 Identities=15% Similarity=0.366 Sum_probs=61.5
Q ss_pred CcceEEEcCCCCCCCHHHHHHHHhccCCeEEEEEeecCCC--------CCcceE----EEEEeCChHHHHHHHHhcCCee
Q 021295 55 KTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHST--------SRSRGF----GFITFDTEQAVDDLLAKGNKLE 122 (314)
Q Consensus 55 ~~~~l~V~nLp~~~~e~~l~~~F~~~G~v~~v~i~~~~~~--------g~~rG~----afV~F~~~~~a~~a~~~l~~~~ 122 (314)
.+-.|||++||+.++...|+++|+.||+|-+|.|.+...+ +..+.. +.|||.+...|+.+.+.||+..
T Consensus 73 k~GVvylS~IPp~m~~~rlReil~~yGeVGRvylqpE~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~iAe~Lnn~~ 152 (278)
T KOG3152|consen 73 KTGVVYLSNIPPYMDPVRLREILSQYGEVGRVYLQPEDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKRIAELLNNTP 152 (278)
T ss_pred cceEEEeccCCCccCHHHHHHHHHhccccceEEecchhhHHHHHHhhcCCCccccchhHHHHHHHHHHHHHHHHHhCCCc
Confidence 4568999999999999999999999999999998876544 222222 4699999999999999999999
Q ss_pred eCCeE
Q 021295 123 LAGAQ 127 (314)
Q Consensus 123 ~~gr~ 127 (314)
|.++.
T Consensus 153 Iggkk 157 (278)
T KOG3152|consen 153 IGGKK 157 (278)
T ss_pred cCCCC
Confidence 98864
No 144
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=97.23 E-value=0.0016 Score=52.45 Aligned_cols=74 Identities=20% Similarity=0.342 Sum_probs=51.7
Q ss_pred CCcceEEEcCCCC------CCCH---HHHHHHHhccCCeEEEEEeecCCCCCcceEEEEEeCChHHHHHHHHhcCCeeeC
Q 021295 54 FKTKKIFVGGIPS------SVNE---DEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELA 124 (314)
Q Consensus 54 ~~~~~l~V~nLp~------~~~e---~~l~~~F~~~G~v~~v~i~~~~~~g~~rG~afV~F~~~~~a~~a~~~l~~~~~~ 124 (314)
++.-||.|.-+.+ ...+ ++|.+.|+.||+|.-|+++.+ .-.|+|.+-++|.+|+++ +++.++
T Consensus 25 PpDaTVvVsv~~~~~~e~~~Fdd~l~~~ll~~~~~~GevvLvRfv~~--------~mwVTF~dg~sALaals~-dg~~v~ 95 (146)
T PF08952_consen 25 PPDATVVVSVDSPSEDEDSSFDDNLMDELLQKFAQYGEVVLVRFVGD--------TMWVTFRDGQSALAALSL-DGIQVN 95 (146)
T ss_dssp -TT-EEEEEECS-SCCCCHS--HHHHHHHHHHHHCCS-ECEEEEETT--------CEEEEESSCHHHHHHHHG-CCSEET
T ss_pred CCCceEEEEecCCCccccCcCCHHHHHHHHHHHHhCCceEEEEEeCC--------eEEEEECccHHHHHHHcc-CCcEEC
Confidence 3445666655541 2222 366788889999998888765 479999999999999998 899999
Q ss_pred CeEEEEeecCCC
Q 021295 125 GAQVEVKKAEPK 136 (314)
Q Consensus 125 gr~l~V~~a~~~ 136 (314)
++.|+|+...+.
T Consensus 96 g~~l~i~LKtpd 107 (146)
T PF08952_consen 96 GRTLKIRLKTPD 107 (146)
T ss_dssp TEEEEEEE----
T ss_pred CEEEEEEeCCcc
Confidence 999999876553
No 145
>KOG1996 consensus mRNA splicing factor [RNA processing and modification]
Probab=97.21 E-value=0.0011 Score=58.69 Aligned_cols=65 Identities=20% Similarity=0.162 Sum_probs=53.4
Q ss_pred HHHHHHHHhccCCeEEEEEeecCCCCCcc-eEEEEEeCChHHHHHHHHhcCCeeeCCeEEEEeecC
Q 021295 70 EDEFKDFFMQFGDVQEHQIMRDHSTSRSR-GFGFITFDTEQAVDDLLAKGNKLELAGAQVEVKKAE 134 (314)
Q Consensus 70 e~~l~~~F~~~G~v~~v~i~~~~~~g~~r-G~afV~F~~~~~a~~a~~~l~~~~~~gr~l~V~~a~ 134 (314)
|+++++.+++||+|..|.|..++.....+ .-.||+|+..++|.+|+-.||+..|.++.+...+-.
T Consensus 300 ede~keEceKyg~V~~viifeip~~p~deavRiFveF~r~e~aiKA~VdlnGRyFGGr~v~A~Fyn 365 (378)
T KOG1996|consen 300 EDETKEECEKYGKVGNVIIFEIPSQPEDEAVRIFVEFERVESAIKAVVDLNGRYFGGRVVSACFYN 365 (378)
T ss_pred HHHHHHHHHhhcceeeEEEEecCCCccchhheeeeeeccHHHHHHHHHhcCCceecceeeeheecc
Confidence 46788999999999999888775433222 347999999999999999999999999998876644
No 146
>KOG2591 consensus c-Mpl binding protein, contains La domain [Signal transduction mechanisms]
Probab=97.14 E-value=0.001 Score=63.63 Aligned_cols=71 Identities=14% Similarity=0.220 Sum_probs=56.5
Q ss_pred CCcceEEEcCCCCCCCHHHHHHHHhc--cCCeEEEEEeecCCCCCcceEEEEEeCChHHHHHHHHhc--CCeeeCCeEEE
Q 021295 54 FKTKKIFVGGIPSSVNEDEFKDFFMQ--FGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKG--NKLELAGAQVE 129 (314)
Q Consensus 54 ~~~~~l~V~nLp~~~~e~~l~~~F~~--~G~v~~v~i~~~~~~g~~rG~afV~F~~~~~a~~a~~~l--~~~~~~gr~l~ 129 (314)
.+.+.|+|+.||..+.+|+|+.||+. |-++++|.+..+. -=||+|++.++|++|.+.| ...+|.+++|+
T Consensus 173 ~kRcIvilREIpettp~e~Vk~lf~~encPk~iscefa~N~-------nWyITfesd~DAQqAykylreevk~fqgKpIm 245 (684)
T KOG2591|consen 173 HKRCIVILREIPETTPIEVVKALFKGENCPKVISCEFAHND-------NWYITFESDTDAQQAYKYLREEVKTFQGKPIM 245 (684)
T ss_pred cceeEEEEeecCCCChHHHHHHHhccCCCCCceeeeeeecC-------ceEEEeecchhHHHHHHHHHHHHHhhcCcchh
Confidence 34567888999999999999999964 6788888877653 2599999999999998876 33567777775
Q ss_pred Ee
Q 021295 130 VK 131 (314)
Q Consensus 130 V~ 131 (314)
..
T Consensus 246 AR 247 (684)
T KOG2591|consen 246 AR 247 (684)
T ss_pred hh
Confidence 54
No 147
>PLN03213 repressor of silencing 3; Provisional
Probab=97.12 E-value=0.00024 Score=66.94 Aligned_cols=41 Identities=15% Similarity=0.509 Sum_probs=34.2
Q ss_pred CCCCCcccEEEEEECCH--HHHHHHHH--ccCccCCcEEEEeecCCC
Q 021295 4 RKTGQPRGFGFVTYADP--SVVDKVIE--DTHIINGKQVEIKRTIPK 46 (314)
Q Consensus 4 ~~tg~~kG~aFV~f~~~--~~a~~A~~--~~~~i~g~~i~v~~~~~~ 46 (314)
+.|+ ||||||+|.+. +++++||+ +..++.++.|+|..+.++
T Consensus 44 RETG--RGFAFVEMssdddaEeeKAISaLNGAEWKGR~LKVNKAKP~ 88 (759)
T PLN03213 44 RTKG--RSFAYIDFSPSSTNSLTKLFSTYNGCVWKGGRLRLEKAKEH 88 (759)
T ss_pred cccC--CceEEEEecCCcHHHHHHHHHHhcCCeecCceeEEeeccHH
Confidence 4577 99999999987 68899998 556889999999887654
No 148
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=97.08 E-value=0.00083 Score=46.66 Aligned_cols=34 Identities=26% Similarity=0.701 Sum_probs=28.6
Q ss_pred CCCCcccEEEEEECCHHHHHHHHH--ccCccCCcEE
Q 021295 5 KTGQPRGFGFVTYADPSVVDKVIE--DTHIINGKQV 38 (314)
Q Consensus 5 ~tg~~kG~aFV~f~~~~~a~~A~~--~~~~i~g~~i 38 (314)
.++++++||||+|++.++|++|++ +...+.++.|
T Consensus 34 ~~~~~~~~a~V~F~~~~~a~~a~~~l~g~~~~~~~i 69 (70)
T PF00076_consen 34 SSGKSKGYAFVEFESEEDAEKALEELNGKKINGRKI 69 (70)
T ss_dssp TTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEE
T ss_pred ccccccceEEEEEcCHHHHHHHHHHcCCCEECccCc
Confidence 578999999999999999999999 4446666665
No 149
>KOG0921 consensus Dosage compensation complex, subunit MLE [Transcription]
Probab=97.00 E-value=0.021 Score=58.26 Aligned_cols=14 Identities=29% Similarity=0.539 Sum_probs=6.6
Q ss_pred CCCcccEEEEEECC
Q 021295 6 TGQPRGFGFVTYAD 19 (314)
Q Consensus 6 tg~~kG~aFV~f~~ 19 (314)
.++.++|+.-.|++
T Consensus 898 ~g~q~~~~g~kfsd 911 (1282)
T KOG0921|consen 898 SGTQRKFAGNKFSD 911 (1282)
T ss_pred ccchhhcccccccc
Confidence 34444555444444
No 150
>KOG2416 consensus Acinus (induces apoptotic chromatin condensation) [Chromatin structure and dynamics]
Probab=97.00 E-value=0.00067 Score=65.31 Aligned_cols=79 Identities=6% Similarity=0.156 Sum_probs=63.9
Q ss_pred CCCCCcceEEEcCCCCCCCHHHHHHHHh-ccCCeEEEEEeecCCCCCcceEEEEEeCChHHHHHHHHhcCCeee---CCe
Q 021295 51 SKDFKTKKIFVGGIPSSVNEDEFKDFFM-QFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLEL---AGA 126 (314)
Q Consensus 51 ~~~~~~~~l~V~nLp~~~~e~~l~~~F~-~~G~v~~v~i~~~~~~g~~rG~afV~F~~~~~a~~a~~~l~~~~~---~gr 126 (314)
+....++.|+|.||-.-+|.-+|+.++. ..+.|++.+|-+ -|-.|||.|.+.++|.+.+.+||++.+ +.+
T Consensus 439 sR~~~SnvlhI~nLvRPFTlgQLkelL~rtgg~Vee~WmDk------IKShCyV~yss~eEA~atr~AlhnV~WP~sNPK 512 (718)
T KOG2416|consen 439 SRKEPSNVLHIDNLVRPFTLGQLKELLGRTGGNVEEFWMDK------IKSHCYVSYSSVEEAAATREALHNVQWPPSNPK 512 (718)
T ss_pred CCCCccceEeeecccccchHHHHHHHHhhccCchHHHHHHH------hhcceeEecccHHHHHHHHHHHhccccCCCCCc
Confidence 3556778999999999999999999998 566777775432 244799999999999999999999876 457
Q ss_pred EEEEeecCC
Q 021295 127 QVEVKKAEP 135 (314)
Q Consensus 127 ~l~V~~a~~ 135 (314)
.|+|.++..
T Consensus 513 ~L~adf~~~ 521 (718)
T KOG2416|consen 513 HLIADFVRA 521 (718)
T ss_pred eeEeeecch
Confidence 788877654
No 151
>PLN03120 nucleic acid binding protein; Provisional
Probab=96.88 E-value=0.0037 Score=55.28 Aligned_cols=40 Identities=18% Similarity=0.262 Sum_probs=34.5
Q ss_pred CcccEEEEEECCHHHHHHHHH-ccCccCCcEEEEeecCCCC
Q 021295 8 QPRGFGFVTYADPSVVDKVIE-DTHIINGKQVEIKRTIPKG 47 (314)
Q Consensus 8 ~~kG~aFV~f~~~~~a~~A~~-~~~~i~g~~i~v~~~~~~~ 47 (314)
.+++||||+|+++++|+.||. +...|.++.|.|.++....
T Consensus 41 ~~~GfAFVtF~d~eaAe~AllLnG~~l~gr~V~Vt~a~~~~ 81 (260)
T PLN03120 41 ERSQIAYVTFKDPQGAETALLLSGATIVDQSVTITPAEDYQ 81 (260)
T ss_pred CCCCEEEEEeCcHHHHHHHHHhcCCeeCCceEEEEeccCCC
Confidence 367999999999999999998 6678999999999876443
No 152
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=96.85 E-value=0.0038 Score=45.13 Aligned_cols=57 Identities=18% Similarity=0.338 Sum_probs=41.6
Q ss_pred cceEEEcCCCCCCCHHHHHHHHhccCCeEEEEEeecCCCCCcceEEEEEeCChHHHHHHHHhcCC
Q 021295 56 TKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNK 120 (314)
Q Consensus 56 ~~~l~V~nLp~~~~e~~l~~~F~~~G~v~~v~i~~~~~~g~~rG~afV~F~~~~~a~~a~~~l~~ 120 (314)
...||---+|.++...||.++|+.||.|.--.| .| | -|||.+.+.+.|..|+..++.
T Consensus 8 RdHVFhltFPkeWK~~DI~qlFspfG~I~VsWi-~d--T-----SAfV~l~~r~~~~~v~~~~~~ 64 (87)
T PF08675_consen 8 RDHVFHLTFPKEWKTSDIYQLFSPFGQIYVSWI-ND--T-----SAFVALHNRDQAKVVMNTLKK 64 (87)
T ss_dssp GCCEEEEE--TT--HHHHHHHCCCCCCEEEEEE-CT--T-----EEEEEECCCHHHHHHHHHHTT
T ss_pred cceEEEEeCchHhhhhhHHHHhccCCcEEEEEE-cC--C-----cEEEEeecHHHHHHHHHHhcc
Confidence 344555559999999999999999999875444 33 2 799999999999999887654
No 153
>smart00362 RRM_2 RNA recognition motif.
Probab=96.77 E-value=0.0027 Score=43.54 Aligned_cols=34 Identities=26% Similarity=0.643 Sum_probs=27.4
Q ss_pred CCcccEEEEEECCHHHHHHHHHc--cCccCCcEEEE
Q 021295 7 GQPRGFGFVTYADPSVVDKVIED--THIINGKQVEI 40 (314)
Q Consensus 7 g~~kG~aFV~f~~~~~a~~A~~~--~~~i~g~~i~v 40 (314)
+.++++|||+|.+.++|++|++. ...+.++.|.|
T Consensus 36 ~~~~~~~~v~f~~~~~a~~a~~~~~~~~~~~~~i~v 71 (72)
T smart00362 36 GKSKGFAFVEFESEEDAEKAIEALNGTKLGGRPLRV 71 (72)
T ss_pred CCCCceEEEEeCCHHHHHHHHHHhCCcEECCEEEee
Confidence 67889999999999999999983 34566666654
No 154
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=96.72 E-value=0.00064 Score=59.04 Aligned_cols=43 Identities=21% Similarity=0.762 Sum_probs=35.2
Q ss_pred CCCCCCCCcccEEEEEECCHHHHHHHHHcc--CccCCcEEEEeec
Q 021295 1 MKDRKTGQPRGFGFVTYADPSVVDKVIEDT--HIINGKQVEIKRT 43 (314)
Q Consensus 1 m~d~~tg~~kG~aFV~f~~~~~a~~A~~~~--~~i~g~~i~v~~~ 43 (314)
|+|+.|+++|||.||.|.+++++..||+++ ..+..+.|.++.+
T Consensus 223 iRdkRTgKSkgygfVSf~~pad~~rAmrem~gkyVgsrpiklRkS 267 (290)
T KOG0226|consen 223 IRDKRTGKSKGYGFVSFRDPADYVRAMREMNGKYVGSRPIKLRKS 267 (290)
T ss_pred cccccccccccceeeeecCHHHHHHHHHhhcccccccchhHhhhh
Confidence 689999999999999999999999999954 3556666655543
No 155
>KOG3973 consensus Uncharacterized conserved glycine-rich protein [Function unknown]
Probab=96.54 E-value=0.023 Score=51.58 Aligned_cols=6 Identities=17% Similarity=0.075 Sum_probs=2.4
Q ss_pred CHHHHH
Q 021295 69 NEDEFK 74 (314)
Q Consensus 69 ~e~~l~ 74 (314)
+|++|+
T Consensus 199 ~w~~iE 204 (465)
T KOG3973|consen 199 TWPEIE 204 (465)
T ss_pred hHHHHH
Confidence 344443
No 156
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=96.42 E-value=0.00085 Score=60.67 Aligned_cols=84 Identities=18% Similarity=0.351 Sum_probs=63.4
Q ss_pred CCCcceEEEcCCCCCCCHHHHH---HHHhccCCeEEEEEeecCCCCC---cceEEEEEeCChHHHHHHHHhcCCeeeCCe
Q 021295 53 DFKTKKIFVGGIPSSVNEDEFK---DFFMQFGDVQEHQIMRDHSTSR---SRGFGFITFDTEQAVDDLLAKGNKLELAGA 126 (314)
Q Consensus 53 ~~~~~~l~V~nLp~~~~e~~l~---~~F~~~G~v~~v~i~~~~~~g~---~rG~afV~F~~~~~a~~a~~~l~~~~~~gr 126 (314)
.++.+.+||-.|+..+..+++. +.|.+|+.|..|.+..+..+.. ..--++|+|+..|+|..||...+++.++++
T Consensus 74 vVqknlvyvvgl~~~~ade~~l~~~eyfgqygki~ki~~~~~~S~~s~~~~~~s~yITy~~~eda~rci~~v~g~~~dg~ 153 (327)
T KOG2068|consen 74 VVQKNLVYVVGLPLDLADESVLERTEYFGQYGKINKIVKNKDPSSSSSSGGTCSVYITYEEEEDADRCIDDVDGFVDDGR 153 (327)
T ss_pred hhhhhhhhhhCCCccccchhhhhCcccccccccceEEeecCCcccccCCCCCCcccccccchHhhhhHHHHhhhHHhhhh
Confidence 3556778999999886555543 6688899999999988762111 112379999999999999999999999998
Q ss_pred EEEEeecCCC
Q 021295 127 QVEVKKAEPK 136 (314)
Q Consensus 127 ~l~V~~a~~~ 136 (314)
.|++.+...+
T Consensus 154 ~lka~~gttk 163 (327)
T KOG2068|consen 154 ALKASLGTTK 163 (327)
T ss_pred hhHHhhCCCc
Confidence 8777665554
No 157
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=96.37 E-value=0.008 Score=41.36 Aligned_cols=34 Identities=24% Similarity=0.620 Sum_probs=27.6
Q ss_pred CcccEEEEEECCHHHHHHHHHcc--CccCCcEEEEe
Q 021295 8 QPRGFGFVTYADPSVVDKVIEDT--HIINGKQVEIK 41 (314)
Q Consensus 8 ~~kG~aFV~f~~~~~a~~A~~~~--~~i~g~~i~v~ 41 (314)
.++++|||+|.+.++|+.|++.. ..++++.+.|.
T Consensus 38 ~~~~~~~v~f~s~~~a~~a~~~~~~~~~~~~~~~v~ 73 (74)
T cd00590 38 KSKGFAFVEFEDEEDAEKALEALNGKELGGRPLRVE 73 (74)
T ss_pred CcceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEe
Confidence 67999999999999999999843 34677777664
No 158
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=96.37 E-value=0.0092 Score=50.21 Aligned_cols=83 Identities=14% Similarity=0.177 Sum_probs=50.2
Q ss_pred CcceEEEcCCCCCCCHHHHHHHHhc-cCCe---EEEEEeecCCC--CCcceEEEEEeCChHHHHHHHHhcCCeeeCC---
Q 021295 55 KTKKIFVGGIPSSVNEDEFKDFFMQ-FGDV---QEHQIMRDHST--SRSRGFGFITFDTEQAVDDLLAKGNKLELAG--- 125 (314)
Q Consensus 55 ~~~~l~V~nLp~~~~e~~l~~~F~~-~G~v---~~v~i~~~~~~--g~~rG~afV~F~~~~~a~~a~~~l~~~~~~g--- 125 (314)
...+|.|++||+.+||+++.+.++. +... ..+.-.....+ ...---|+|.|.+.+++...++.++++.|.+
T Consensus 6 ~~~KvVIR~LPP~LteeeF~~~i~~~l~~~~~w~y~~g~~~~~~~~~~~~SRaYi~F~~~~~~~~F~~~~~g~~F~D~kg 85 (176)
T PF03467_consen 6 EGTKVVIRRLPPNLTEEEFWEQISPWLPDEWDWYYFQGKYGKKSFKPPTYSRAYINFKNPEDLLEFRDRFDGHVFVDSKG 85 (176)
T ss_dssp ---EEEEEEE-TTS-HHHHCCCCSS--SSE---EEEEEEES-SSSTTS--EEEEEEESSCHHHHHHHHHCTTEEEE-TTS
T ss_pred cCceEEEeCCCCCCCHHHHHHHhhhhcccccceEEEecCCCCccCCCCcceEEEEEeCCHHHHHHHHHhcCCcEEECCCC
Confidence 4568999999999999999997765 4443 23331122111 1123459999999999999999999977644
Q ss_pred --eEEEEeecCCCC
Q 021295 126 --AQVEVKKAEPKK 137 (314)
Q Consensus 126 --r~l~V~~a~~~~ 137 (314)
....|++|.-++
T Consensus 86 ~~~~~~VE~Apyqk 99 (176)
T PF03467_consen 86 NEYPAVVEFAPYQK 99 (176)
T ss_dssp -EEEEEEEE-SS--
T ss_pred CCcceeEEEcchhc
Confidence 345666666543
No 159
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=96.31 E-value=0.021 Score=45.61 Aligned_cols=74 Identities=11% Similarity=0.140 Sum_probs=54.9
Q ss_pred CCCCcceEEEcCCCCCCC-HHH---HHHHHhccCCeEEEEEeecCCCCCcceEEEEEeCChHHHHHHHHhcCCeeeCCeE
Q 021295 52 KDFKTKKIFVGGIPSSVN-EDE---FKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQ 127 (314)
Q Consensus 52 ~~~~~~~l~V~nLp~~~~-e~~---l~~~F~~~G~v~~v~i~~~~~~g~~rG~afV~F~~~~~a~~a~~~l~~~~~~gr~ 127 (314)
++++..+|.|.=|..++. .+| |...++.||+|+.|.++-. --|+|+|++..+|-+|+.+++. ..-+..
T Consensus 82 kepPMsTIVVRWlkknm~~~edl~sV~~~Ls~fGpI~SVT~cGr-------qsavVvF~d~~SAC~Av~Af~s-~~pgtm 153 (166)
T PF15023_consen 82 KEPPMSTIVVRWLKKNMQPTEDLKSVIQRLSVFGPIQSVTLCGR-------QSAVVVFKDITSACKAVSAFQS-RAPGTM 153 (166)
T ss_pred CCCCceeEEeehhhhcCChHHHHHHHHHHHHhcCCcceeeecCC-------ceEEEEehhhHHHHHHHHhhcC-CCCCce
Confidence 467788999987777653 244 4566789999999988743 2699999999999999998765 445555
Q ss_pred EEEeec
Q 021295 128 VEVKKA 133 (314)
Q Consensus 128 l~V~~a 133 (314)
+.+.|.
T Consensus 154 ~qCsWq 159 (166)
T PF15023_consen 154 FQCSWQ 159 (166)
T ss_pred EEeecc
Confidence 665553
No 160
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=96.17 E-value=0.062 Score=41.47 Aligned_cols=69 Identities=19% Similarity=0.261 Sum_probs=52.2
Q ss_pred CcceEEEcCCCCCCCHHHHHHHHhccC-CeEEEEEeecCCCCCcceEEEEEeCChHHHHHHHHhcCCeeeCC
Q 021295 55 KTKKIFVGGIPSSVNEDEFKDFFMQFG-DVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAG 125 (314)
Q Consensus 55 ~~~~l~V~nLp~~~~e~~l~~~F~~~G-~v~~v~i~~~~~~g~~rG~afV~F~~~~~a~~a~~~l~~~~~~g 125 (314)
.+..+.|..+|+.++-++|..+.+.+- .|+.++|++|... .+=.+.|+|.+.++|++-.+..|+..++.
T Consensus 12 ~~~~~~l~vp~~~~~~d~l~~f~~~~~~~i~~~riird~~p--nrymVLikF~~~~~Ad~Fy~~fNGk~Fns 81 (110)
T PF07576_consen 12 RSTLCCLAVPPYMTPSDFLLFFGAPFREDIEHIRIIRDGTP--NRYMVLIKFRDQESADEFYEEFNGKPFNS 81 (110)
T ss_pred CceEEEEEeCcccccHHHHHHhhhcccccEEEEEEeeCCCC--ceEEEEEEECCHHHHHHHHHHhCCCccCC
Confidence 344555666677777788877777664 4678899887432 45578999999999999999999977655
No 161
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=96.16 E-value=0.0015 Score=65.71 Aligned_cols=80 Identities=16% Similarity=0.264 Sum_probs=62.9
Q ss_pred CCCCcceEEEcCCCCCCCHHHHHHHHhccCCeEEEEEeecCCCCCcceEEEEEeCChHHHHHHHHhcCCeeeCCeEEEEe
Q 021295 52 KDFKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVK 131 (314)
Q Consensus 52 ~~~~~~~l~V~nLp~~~~e~~l~~~F~~~G~v~~v~i~~~~~~g~~rG~afV~F~~~~~a~~a~~~l~~~~~~gr~l~V~ 131 (314)
....+++||++||+..+++.+|+..|.++|.|++|+|-+.+.. +---|+||.|.+.+.+-+|+..+....|..-.+++.
T Consensus 368 D~~atrTLf~Gnl~~kl~eseiR~af~e~gkve~VDiKtP~~~-~esa~~f~~~~n~dmtp~ak~e~s~~~I~~g~~r~g 446 (975)
T KOG0112|consen 368 DFRATRTLFLGNLDSKLTESEIRPAFDESGKVEEVDIKTPHIK-TESAYAFVSLLNTDMTPSAKFEESGPLIGNGTHRIG 446 (975)
T ss_pred chhhhhhhhhcCcccchhhhhhhhhhhhhccccccccccCCCC-cccchhhhhhhccccCcccchhhcCCccccCccccc
Confidence 3456789999999999999999999999999999999776432 233489999999988888877776666654444443
Q ss_pred e
Q 021295 132 K 132 (314)
Q Consensus 132 ~ 132 (314)
+
T Consensus 447 l 447 (975)
T KOG0112|consen 447 L 447 (975)
T ss_pred c
Confidence 3
No 162
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=95.93 E-value=0.028 Score=40.10 Aligned_cols=59 Identities=17% Similarity=0.332 Sum_probs=36.8
Q ss_pred CCCCHHHHHHHHhccCC-----eEEEEEeecCCCCCcceEEEEEeCChHHHHHHHHhcCCeeeCCeEEEEeec
Q 021295 66 SSVNEDEFKDFFMQFGD-----VQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVKKA 133 (314)
Q Consensus 66 ~~~~e~~l~~~F~~~G~-----v~~v~i~~~~~~g~~rG~afV~F~~~~~a~~a~~~l~~~~~~gr~l~V~~a 133 (314)
..++..+|..++.+... |-.|+|..+ |+||+-... .++++++.|++..+.+++|+|+.|
T Consensus 11 dg~~~~~iv~~i~~~~gi~~~~IG~I~I~~~--------~S~vev~~~-~a~~v~~~l~~~~~~gk~v~ve~A 74 (74)
T PF03880_consen 11 DGLTPRDIVGAICNEAGIPGRDIGRIDIFDN--------FSFVEVPEE-VAEKVLEALNGKKIKGKKVRVERA 74 (74)
T ss_dssp GT--HHHHHHHHHTCTTB-GGGEEEEEE-SS---------EEEEE-TT--HHHHHHHHTT--SSS----EEE-
T ss_pred cCCCHHHHHHHHHhccCCCHHhEEEEEEeee--------EEEEEECHH-HHHHHHHHhcCCCCCCeeEEEEEC
Confidence 35788899988877643 557888765 899988654 788899999999999999999875
No 163
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=95.89 E-value=0.00041 Score=63.57 Aligned_cols=64 Identities=14% Similarity=0.056 Sum_probs=50.5
Q ss_pred ceEEEcCCCCCCCHHHHHHHHhccCCeEEEEEeecCCCCCcceEEEEEeCChHHHHHHHHhcCCeeeCC
Q 021295 57 KKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAG 125 (314)
Q Consensus 57 ~~l~V~nLp~~~~e~~l~~~F~~~G~v~~v~i~~~~~~g~~rG~afV~F~~~~~a~~a~~~l~~~~~~g 125 (314)
++|+|.+|+..+...++.+.|..+|+|...++.... ..-+|-|+|........|+.. ++.++.-
T Consensus 152 Rt~~v~sl~~~~~l~e~~e~f~r~Gev~ya~~ask~----~s~~c~~sf~~qts~~halr~-~gre~k~ 215 (479)
T KOG4676|consen 152 RTREVQSLISAAILPESGESFERKGEVSYAHTASKS----RSSSCSHSFRKQTSSKHALRS-HGRERKR 215 (479)
T ss_pred hhhhhhcchhhhcchhhhhhhhhcchhhhhhhhccC----CCcchhhhHhhhhhHHHHHHh-cchhhhh
Confidence 789999999999999999999999999877665332 223677999988888888877 4545443
No 164
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=95.55 E-value=0.0099 Score=54.11 Aligned_cols=45 Identities=18% Similarity=0.494 Sum_probs=39.4
Q ss_pred CCCCCCCCcccEEEEEECCHHHHHHHHH--ccCccCCcEEEEeecCC
Q 021295 1 MKDRKTGQPRGFGFVTYADPSVVDKVIE--DTHIINGKQVEIKRTIP 45 (314)
Q Consensus 1 m~d~~tg~~kG~aFV~f~~~~~a~~A~~--~~~~i~g~~i~v~~~~~ 45 (314)
|+|++|+.+--||||+|++.++.++|.- +...|+.++|.|..+.+
T Consensus 272 IRD~ktgdsLqyaFiEFen~escE~AyFKMdNvLIDDrRIHVDFSQS 318 (479)
T KOG0415|consen 272 IRDRKTGDSLQYAFIEFENKESCEQAYFKMDNVLIDDRRIHVDFSQS 318 (479)
T ss_pred EecccccchhheeeeeecchhhHHHHHhhhcceeeccceEEeehhhh
Confidence 6899999999999999999999999986 44578999999987654
No 165
>KOG2253 consensus U1 snRNP complex, subunit SNU71 and related PWI-motif proteins [RNA processing and modification]
Probab=95.45 E-value=0.0098 Score=58.28 Aligned_cols=80 Identities=19% Similarity=0.193 Sum_probs=66.9
Q ss_pred CCCCCCCCCCCCcceEEEcCCCCCCCHHHHHHHHhccCCeEEEEEeecCCCCCcceEEEEEeCChHHHHHHHHhcCCeee
Q 021295 44 IPKGAVGSKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLEL 123 (314)
Q Consensus 44 ~~~~~~~~~~~~~~~l~V~nLp~~~~e~~l~~~F~~~G~v~~v~i~~~~~~g~~rG~afV~F~~~~~a~~a~~~l~~~~~ 123 (314)
+|.........+..+|||+||...+.++-++.++.++|.|..+..+. |.|.+|+.+.....|+..|+...+
T Consensus 28 ~p~qp~~~~~~~~~~vfv~~~~~~~s~~~~~~il~~~g~v~s~kr~~---------fgf~~f~~~~~~~ra~r~~t~~~~ 98 (668)
T KOG2253|consen 28 VPIQPVFQPLPPRDTVFVGNISYLVSQEFWKSILAKSGFVPSWKRDK---------FGFCEFLKHIGDLRASRLLTELNI 98 (668)
T ss_pred cCCcccccCCCCCceeEecchhhhhhHHHHHHHHhhCCcchhhhhhh---------hcccchhhHHHHHHHHHHhcccCC
Confidence 33344444556778999999999999999999999999988766543 899999999999999999999999
Q ss_pred CCeEEEEee
Q 021295 124 AGAQVEVKK 132 (314)
Q Consensus 124 ~gr~l~V~~ 132 (314)
+++.|.+..
T Consensus 99 ~~~kl~~~~ 107 (668)
T KOG2253|consen 99 DDQKLIENV 107 (668)
T ss_pred Ccchhhccc
Confidence 888877655
No 166
>KOG2135 consensus Proteins containing the RNA recognition motif [General function prediction only]
Probab=95.37 E-value=0.0094 Score=56.22 Aligned_cols=74 Identities=16% Similarity=0.276 Sum_probs=59.6
Q ss_pred CcceEEEcCCCCCC-CHHHHHHHHhccCCeEEEEEeecCCCCCcceEEEEEeCChHHHHHHHHhcCCeeeCCeEEEEeec
Q 021295 55 KTKKIFVGGIPSSV-NEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVKKA 133 (314)
Q Consensus 55 ~~~~l~V~nLp~~~-~e~~l~~~F~~~G~v~~v~i~~~~~~g~~rG~afV~F~~~~~a~~a~~~l~~~~~~gr~l~V~~a 133 (314)
+.+.|-|..+|..+ +-++|..+|.+||+|+.|.|-...+ -|+|+|.+..+|-+|... +...|+++.|+|.|-
T Consensus 371 dhs~l~lek~~~glnt~a~ln~hfA~fG~i~n~qv~~~~~------~a~vTF~t~aeag~a~~s-~~avlnnr~iKl~wh 443 (526)
T KOG2135|consen 371 DHSPLALEKSPFGLNTIADLNPHFAQFGEIENIQVDYSSL------HAVVTFKTRAEAGEAYAS-HGAVLNNRFIKLFWH 443 (526)
T ss_pred ccchhhhhccCCCCchHhhhhhhhhhcCccccccccCchh------hheeeeeccccccchhcc-ccceecCceeEEEEe
Confidence 44566666777765 5689999999999999988765422 599999999999777665 788999999999998
Q ss_pred CC
Q 021295 134 EP 135 (314)
Q Consensus 134 ~~ 135 (314)
.+
T Consensus 444 np 445 (526)
T KOG2135|consen 444 NP 445 (526)
T ss_pred cC
Confidence 77
No 167
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=95.34 E-value=0.016 Score=53.96 Aligned_cols=75 Identities=20% Similarity=0.406 Sum_probs=58.3
Q ss_pred ceEEEcCCCCCCCHHHHHHHHhccCC-eEEEEEeecCCCCCcceEEEEEeCChHHHHHHHHhcCC-eeeCCeEEEEeecC
Q 021295 57 KKIFVGGIPSSVNEDEFKDFFMQFGD-VQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNK-LELAGAQVEVKKAE 134 (314)
Q Consensus 57 ~~l~V~nLp~~~~e~~l~~~F~~~G~-v~~v~i~~~~~~g~~rG~afV~F~~~~~a~~a~~~l~~-~~~~gr~l~V~~a~ 134 (314)
++||++||.+.++..||+.+|...-. +..-.|+ ..+||||.+.+...+.+|++.++. +++.++.++|....
T Consensus 2 nklyignL~p~~~psdl~svfg~ak~~~~g~fl~-------k~gyafvd~pdq~wa~kaie~~sgk~elqGkr~e~~~sv 74 (584)
T KOG2193|consen 2 NKLYIGNLSPQVTPSDLESVFGDAKIPGSGQFLV-------KSGYAFVDCPDQQWANKAIETLSGKVELQGKRQEVEHSV 74 (584)
T ss_pred CcccccccCCCCChHHHHHHhccccCCCCcceee-------ecceeeccCCchhhhhhhHHhhchhhhhcCceeeccchh
Confidence 47999999999999999999975411 1111122 246999999999999999998866 56889999998877
Q ss_pred CCCC
Q 021295 135 PKKP 138 (314)
Q Consensus 135 ~~~~ 138 (314)
+++.
T Consensus 75 ~kkq 78 (584)
T KOG2193|consen 75 PKKQ 78 (584)
T ss_pred hHHH
Confidence 7654
No 168
>PLN03121 nucleic acid binding protein; Provisional
Probab=95.30 E-value=0.04 Score=48.14 Aligned_cols=39 Identities=21% Similarity=0.247 Sum_probs=33.3
Q ss_pred CCcccEEEEEECCHHHHHHHHH-ccCccCCcEEEEeecCC
Q 021295 7 GQPRGFGFVTYADPSVVDKVIE-DTHIINGKQVEIKRTIP 45 (314)
Q Consensus 7 g~~kG~aFV~f~~~~~a~~A~~-~~~~i~g~~i~v~~~~~ 45 (314)
+++++||||+|+++++|+.|+. +..+|..+.|.|.....
T Consensus 41 ~et~gfAfVtF~d~~aaetAllLnGa~l~d~~I~It~~~~ 80 (243)
T PLN03121 41 GEYACTAYVTFKDAYALETAVLLSGATIVDQRVCITRWGQ 80 (243)
T ss_pred CCcceEEEEEECCHHHHHHHHhcCCCeeCCceEEEEeCcc
Confidence 5667899999999999999998 66788999999887543
No 169
>KOG4285 consensus Mitotic phosphoprotein [Cell cycle control, cell division, chromosome partitioning]
Probab=95.20 E-value=0.12 Score=46.33 Aligned_cols=74 Identities=20% Similarity=0.301 Sum_probs=52.9
Q ss_pred cceEEEcCCCCCCCHHHHHHHHhccCCeEEEEEeecCCCCCcceEEEEEeCChHHHHHHHHhcCCeeeCCe-EEEEeecC
Q 021295 56 TKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGA-QVEVKKAE 134 (314)
Q Consensus 56 ~~~l~V~nLp~~~~e~~l~~~F~~~G~v~~v~i~~~~~~g~~rG~afV~F~~~~~a~~a~~~l~~~~~~gr-~l~V~~a~ 134 (314)
..=|.|-.+|.... ..|..+|++||+|+++....+ --+-+|.|.+..+|++||.+ |+..|++. -|-|+.+.
T Consensus 197 D~WVTVfGFppg~~-s~vL~~F~~cG~Vvkhv~~~n------gNwMhirYssr~~A~KALsk-ng~ii~g~vmiGVkpCt 268 (350)
T KOG4285|consen 197 DTWVTVFGFPPGQV-SIVLNLFSRCGEVVKHVTPSN------GNWMHIRYSSRTHAQKALSK-NGTIIDGDVMIGVKPCT 268 (350)
T ss_pred cceEEEeccCccch-hHHHHHHHhhCeeeeeecCCC------CceEEEEecchhHHHHhhhh-cCeeeccceEEeeeecC
Confidence 34455556665443 466789999999987765522 23889999999999999999 77777764 45666665
Q ss_pred CCC
Q 021295 135 PKK 137 (314)
Q Consensus 135 ~~~ 137 (314)
++.
T Consensus 269 Dks 271 (350)
T KOG4285|consen 269 DKS 271 (350)
T ss_pred CHH
Confidence 553
No 170
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=95.09 E-value=0.093 Score=44.40 Aligned_cols=63 Identities=11% Similarity=0.171 Sum_probs=46.0
Q ss_pred CCHHHHHHHHhccCCeEEEEEeecCCCCCcceEEEEEeCChHHHHHHHHhcC--CeeeCCeEEEEeecCCC
Q 021295 68 VNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGN--KLELAGAQVEVKKAEPK 136 (314)
Q Consensus 68 ~~e~~l~~~F~~~G~v~~v~i~~~~~~g~~rG~afV~F~~~~~a~~a~~~l~--~~~~~gr~l~V~~a~~~ 136 (314)
...+.|+++|..+..+..+.+++. -.-..|.|.+.++|.+|...|+ ...+.+..|+|-++...
T Consensus 7 ~~~~~l~~l~~~~~~~~~~~~L~s------FrRi~v~f~~~~~A~~~r~~l~~~~~~~~g~~l~~yf~~~~ 71 (184)
T PF04847_consen 7 DNLAELEELFSTYDPPVQFSPLKS------FRRIRVVFESPESAQRARQLLHWDGTSFNGKRLRVYFGQPT 71 (184)
T ss_dssp --HHHHHHHHHTT-SS-EEEEETT------TTEEEEE-SSTTHHHHHHHTST--TSEETTEE-EEE----S
T ss_pred hhHHHHHHHHHhcCCceEEEEcCC------CCEEEEEeCCHHHHHHHHHHhcccccccCCCceEEEEcccc
Confidence 345889999999999988877754 2258999999999999999999 89999999999877443
No 171
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=95.03 E-value=0.028 Score=56.12 Aligned_cols=71 Identities=21% Similarity=0.355 Sum_probs=50.1
Q ss_pred CcccEEEEEECCHHHHHHHHH--ccCccCCcEEEEeecCCCCCCCC-CCCCcceEEEcCCCCCCCHHHHHHHHh
Q 021295 8 QPRGFGFVTYADPSVVDKVIE--DTHIINGKQVEIKRTIPKGAVGS-KDFKTKKIFVGGIPSSVNEDEFKDFFM 78 (314)
Q Consensus 8 ~~kG~aFV~f~~~~~a~~A~~--~~~~i~g~~i~v~~~~~~~~~~~-~~~~~~~l~V~nLp~~~~e~~l~~~F~ 78 (314)
-++++|||++...++|++||. +.+.+..+.|++.|+..+....+ ++.-...|=|.-|||+.-.++|+.|++
T Consensus 455 ~~R~cAfI~M~~RqdA~kalqkl~n~kv~~k~Iki~Wa~g~G~kse~k~~wD~~lGVt~IP~~kLt~dl~~~~e 528 (894)
T KOG0132|consen 455 PPRGCAFIKMVRRQDAEKALQKLSNVKVADKTIKIAWAVGKGPKSEYKDYWDVELGVTYIPWEKLTDDLEAWCE 528 (894)
T ss_pred cCCceeEEEEeehhHHHHHHHHHhcccccceeeEEeeeccCCcchhhhhhhhcccCeeEeehHhcCHHHHHhhh
Confidence 579999999999999999998 45688899999999987654431 111122333445688754455776665
No 172
>KOG4574 consensus RNA-binding protein (contains RRM and Pumilio-like repeats) [General function prediction only]
Probab=94.73 E-value=0.023 Score=57.18 Aligned_cols=77 Identities=16% Similarity=0.177 Sum_probs=64.0
Q ss_pred eEEEcCCCCCCCHHHHHHHHhccCCeEEEEEeecCCCCCcceEEEEEeCChHHHHHHHHhcCCee--eCCeEEEEeecCC
Q 021295 58 KIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLE--LAGAQVEVKKAEP 135 (314)
Q Consensus 58 ~l~V~nLp~~~~e~~l~~~F~~~G~v~~v~i~~~~~~g~~rG~afV~F~~~~~a~~a~~~l~~~~--~~gr~l~V~~a~~ 135 (314)
+..+.|++..++-..|..+|++|+.|+.++.+++-. .|.|+|++.+.|-.|+++|++.+ +.+-+.+|.+|+.
T Consensus 300 ~~~~~nn~v~~tSssL~~l~s~yg~v~s~wtlr~~N------~alvs~~s~~sai~a~dAl~gkevs~~g~Ps~V~~ak~ 373 (1007)
T KOG4574|consen 300 KQSLENNAVNLTSSSLATLCSDYGSVASAWTLRDLN------MALVSFSSVESAILALDALQGKEVSVTGAPSRVSFAKT 373 (1007)
T ss_pred hhhhhcccccchHHHHHHHHHhhcchhhheeccccc------chhhhhHHHHHHHHhhhhhcCCcccccCCceeEEeccc
Confidence 456667777778888999999999999999998843 79999999999999999998876 4678889988887
Q ss_pred CCCCC
Q 021295 136 KKPNL 140 (314)
Q Consensus 136 ~~~~~ 140 (314)
-+...
T Consensus 374 ~~~~e 378 (1007)
T KOG4574|consen 374 LPMYE 378 (1007)
T ss_pred ccccc
Confidence 65443
No 173
>KOG0921 consensus Dosage compensation complex, subunit MLE [Transcription]
Probab=94.44 E-value=0.58 Score=48.26 Aligned_cols=10 Identities=10% Similarity=0.046 Sum_probs=4.1
Q ss_pred EEEEeecCCC
Q 021295 127 QVEVKKAEPK 136 (314)
Q Consensus 127 ~l~V~~a~~~ 136 (314)
.|++..|...
T Consensus 1135 dIs~pSAa~i 1144 (1282)
T KOG0921|consen 1135 DISRPSAADI 1144 (1282)
T ss_pred Hhcccccccc
Confidence 3444444433
No 174
>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=94.41 E-value=0.054 Score=49.36 Aligned_cols=36 Identities=33% Similarity=0.600 Sum_probs=31.9
Q ss_pred ccEEEEEECCHHHHHHHHH---ccCccCCcEEEEeecCC
Q 021295 10 RGFGFVTYADPSVVDKVIE---DTHIINGKQVEIKRTIP 45 (314)
Q Consensus 10 kG~aFV~f~~~~~a~~A~~---~~~~i~g~~i~v~~~~~ 45 (314)
+++|||+|.+.++|++|.+ +...|++++|.|+|..+
T Consensus 264 ~~CAFv~ftTR~aAE~Aae~~~n~lvI~G~Rl~i~Wg~~ 302 (377)
T KOG0153|consen 264 KGCAFVTFTTREAAEKAAEKSFNKLVINGFRLKIKWGRP 302 (377)
T ss_pred cccceeeehhhHHHHHHHHhhcceeeecceEEEEEeCCC
Confidence 5699999999999999998 44488999999999887
No 175
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=94.35 E-value=0.041 Score=49.91 Aligned_cols=81 Identities=17% Similarity=0.178 Sum_probs=66.1
Q ss_pred CcceEEEcCCCCCCCHHHHHHHHhccCCeEEEEEeecCCCCCcceEEEEEeCChHHHHHHHHhcCCeeeCCeEEEEeecC
Q 021295 55 KTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVKKAE 134 (314)
Q Consensus 55 ~~~~l~V~nLp~~~~e~~l~~~F~~~G~v~~v~i~~~~~~g~~rG~afV~F~~~~~a~~a~~~l~~~~~~gr~l~V~~a~ 134 (314)
...++|++++.+.+.+.++..++.+.+.+..+.+........+++++.|.|...+.+..||+......+..+.+......
T Consensus 87 ~~~~~f~g~~s~~~e~~~~~~~~~~~g~~~~~~~S~~~~~~~sk~~~s~~f~~ks~~~~~l~~s~~~~~~~~~~~~dl~~ 166 (285)
T KOG4210|consen 87 SSSTFFVGELSENIEESEDDNFSSEAGLRVDARSSSLEDSLSSKGGLSVHFAGKSQFFAALEESGSKVLDGNKGEKDLNT 166 (285)
T ss_pred ccccccccccccchhhccccccchhhcCcccchhhhhccccccccceeeccccHHHHHHHHHhhhccccccccccCcccc
Confidence 46789999999999999999999999988888877777788899999999999999999999855545555555444433
Q ss_pred C
Q 021295 135 P 135 (314)
Q Consensus 135 ~ 135 (314)
.
T Consensus 167 ~ 167 (285)
T KOG4210|consen 167 R 167 (285)
T ss_pred c
Confidence 3
No 176
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=94.20 E-value=0.42 Score=45.22 Aligned_cols=69 Identities=16% Similarity=0.328 Sum_probs=58.3
Q ss_pred CcceEEEcCCCCCCCHHHHHHHHhcc-CCeEEEEEeecCCCCCcceEEEEEeCChHHHHHHHHhcCCeeeCC
Q 021295 55 KTKKIFVGGIPSSVNEDEFKDFFMQF-GDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAG 125 (314)
Q Consensus 55 ~~~~l~V~nLp~~~~e~~l~~~F~~~-G~v~~v~i~~~~~~g~~rG~afV~F~~~~~a~~a~~~l~~~~~~g 125 (314)
....|+|--+|..++-.||..|...+ -.|.+|+|++|... .+=.+.|+|.+.++|....+.+|+..|+.
T Consensus 73 ~~~mLcilaVP~~mt~~Dll~F~~~~~~~I~~irivRd~~p--nrymvLIkFr~q~da~~Fy~efNGk~Fn~ 142 (493)
T KOG0804|consen 73 SSTMLCILAVPAYMTSHDLLRFCASFIKQISDIRIVRDGMP--NRYMVLIKFRDQADADTFYEEFNGKQFNS 142 (493)
T ss_pred CCcEEEEEeccccccHHHHHHHHHHHhhhhheeEEeecCCC--ceEEEEEEeccchhHHHHHHHcCCCcCCC
Confidence 37889999999999999999998765 46889999997543 34468999999999999999999987765
No 177
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=93.82 E-value=0.092 Score=50.69 Aligned_cols=81 Identities=12% Similarity=0.148 Sum_probs=52.0
Q ss_pred cceEEEcCCCCCCCHHHHHHHHhc-cCCeEEEEEeecCCCCCcceEEEEEeCChHHHHHHHHhcCCee---eCC-eEEEE
Q 021295 56 TKKIFVGGIPSSVNEDEFKDFFMQ-FGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLE---LAG-AQVEV 130 (314)
Q Consensus 56 ~~~l~V~nLp~~~~e~~l~~~F~~-~G~v~~v~i~~~~~~g~~rG~afV~F~~~~~a~~a~~~l~~~~---~~g-r~l~V 130 (314)
..++.|.|+|...|...|.+..++ .+.=+-+.++.|-.+....|||||.|.+++++..+.++.|+.. |.. +.++|
T Consensus 388 rtt~~iknipNK~T~~ml~~~d~~~~gtYDFlYLPiDF~nkcNvGYAFINm~sp~ai~~F~kAFnGk~W~~FnS~Kia~i 467 (549)
T KOG4660|consen 388 RTTLMIKNIPNKYTSKMLLAADEKNKGTYDFLYLPIDFKNKCNVGYAFINMTSPEAIIRFYKAFNGKKWEKFNSEKIASI 467 (549)
T ss_pred hhhhHhhccCchhhHHhhhhhhccccCccceEEeccccccccccceeEEeecCHHHHHHHHHHHcCCchhhhcceeeeee
Confidence 344455555555444444433222 2333456677777777788999999999999999999988865 333 44566
Q ss_pred eecCCC
Q 021295 131 KKAEPK 136 (314)
Q Consensus 131 ~~a~~~ 136 (314)
.+|.-+
T Consensus 468 tYArIQ 473 (549)
T KOG4660|consen 468 TYARIQ 473 (549)
T ss_pred ehhhhh
Confidence 666544
No 178
>KOG4483 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.74 E-value=0.31 Score=45.30 Aligned_cols=59 Identities=8% Similarity=0.170 Sum_probs=47.2
Q ss_pred CCCCcceEEEcCCCCCCCHHHHHHHHhccCC-eEEEEEeecCCCCCcceEEEEEeCChHHHHHHHHh
Q 021295 52 KDFKTKKIFVGGIPSSVNEDEFKDFFMQFGD-VQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAK 117 (314)
Q Consensus 52 ~~~~~~~l~V~nLp~~~~e~~l~~~F~~~G~-v~~v~i~~~~~~g~~rG~afV~F~~~~~a~~a~~~ 117 (314)
+..-...|=|-++|.....+||..+|+.|.. =.+|..+.|. .||-.|++...|..||-.
T Consensus 387 e~dlpHVlEIydfp~efkteDll~~f~~yq~kgfdIkWvDdt-------halaVFss~~~AaeaLt~ 446 (528)
T KOG4483|consen 387 ESDLPHVLEIYDFPDEFKTEDLLKAFETYQNKGFDIKWVDDT-------HALAVFSSVNRAAEALTL 446 (528)
T ss_pred cccccceeEeccCchhhccHHHHHHHHHhhcCCceeEEeecc-------eeEEeecchHHHHHHhhc
Confidence 3334567888899999999999999999854 3456666553 799999999999999886
No 179
>KOG1995 consensus Conserved Zn-finger protein [General function prediction only]
Probab=93.61 E-value=0.051 Score=49.71 Aligned_cols=45 Identities=27% Similarity=0.514 Sum_probs=37.0
Q ss_pred CCCCCCCcccEEEEEECCHHHHHHHHH--ccCccCCcEEEEeecCCC
Q 021295 2 KDRKTGQPRGFGFVTYADPSVVDKVIE--DTHIINGKQVEIKRTIPK 46 (314)
Q Consensus 2 ~d~~tg~~kG~aFV~f~~~~~a~~A~~--~~~~i~g~~i~v~~~~~~ 46 (314)
+||+|.++|+-|.|+|+|+.+|++||+ +-..+.+..|+|..+..+
T Consensus 108 ~dkeT~~~KGeatvS~~D~~~akaai~~~agkdf~gn~ikvs~a~~r 154 (351)
T KOG1995|consen 108 TDKETGAPKGEATVSYEDPPAAKAAIEWFAGKDFCGNTIKVSLAERR 154 (351)
T ss_pred ccccccCcCCceeeeecChhhhhhhhhhhccccccCCCchhhhhhhc
Confidence 688999999999999999999999998 555677777766655444
No 180
>PF14111 DUF4283: Domain of unknown function (DUF4283)
Probab=93.56 E-value=0.04 Score=44.84 Aligned_cols=83 Identities=14% Similarity=0.160 Sum_probs=61.7
Q ss_pred cccEEEEEECCHHHHHHHHH-ccCccCCcEEEEeecCCCCCCCCCCCCcce--EEEcCCCCC-CCHHHHHHHHhccCCeE
Q 021295 9 PRGFGFVTYADPSVVDKVIE-DTHIINGKQVEIKRTIPKGAVGSKDFKTKK--IFVGGIPSS-VNEDEFKDFFMQFGDVQ 84 (314)
Q Consensus 9 ~kG~aFV~f~~~~~a~~A~~-~~~~i~g~~i~v~~~~~~~~~~~~~~~~~~--l~V~nLp~~-~~e~~l~~~F~~~G~v~ 84 (314)
..++..++|.++++++++++ ....+.+..+.++.-.+............. |-|.+||.. .+++.|+++.+.+|++.
T Consensus 54 ~~~~fl~~F~~~~d~~~vl~~~p~~~~~~~~~l~~W~~~~~~~~~~~~~~~vWVri~glP~~~~~~~~~~~i~~~iG~~i 133 (153)
T PF14111_consen 54 GDNLFLFQFESEEDRQRVLKGGPWNFNGHFLILQRWSPDFNPSEVKFEHIPVWVRIYGLPLHLWSEEILKAIGSKIGEPI 133 (153)
T ss_pred CCCeEEEEEEeccceeEEEecccccccccchhhhhhcccccccccceeccchhhhhccCCHHHhhhHHHHHHHHhcCCeE
Confidence 46788899999999999998 555677777777766655444333333333 556899997 58888999999999999
Q ss_pred EEEEeec
Q 021295 85 EHQIMRD 91 (314)
Q Consensus 85 ~v~i~~~ 91 (314)
+++....
T Consensus 134 ~vD~~t~ 140 (153)
T PF14111_consen 134 EVDENTL 140 (153)
T ss_pred EEEcCCC
Confidence 9887644
No 181
>KOG2318 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.40 E-value=0.26 Score=47.91 Aligned_cols=76 Identities=13% Similarity=0.209 Sum_probs=58.8
Q ss_pred CCCcceEEEcCCCCC-CCHHHHHHHHhcc----CCeEEEEEeecCC----------CCC---------------------
Q 021295 53 DFKTKKIFVGGIPSS-VNEDEFKDFFMQF----GDVQEHQIMRDHS----------TSR--------------------- 96 (314)
Q Consensus 53 ~~~~~~l~V~nLp~~-~~e~~l~~~F~~~----G~v~~v~i~~~~~----------~g~--------------------- 96 (314)
...+++|-|.||.|+ +..+||..+|..| |.|..|.|++... ++.
T Consensus 171 ~~~T~RLAVvNMDWd~v~AkDL~v~~nSFlP~gGsilSV~IYpSeFGkeRM~eEeV~GP~~el~~~~e~~~~s~sD~ee~ 250 (650)
T KOG2318|consen 171 GEETKRLAVVNMDWDRVKAKDLFVLFNSFLPKGGSILSVKIYPSEFGKERMKEEEVHGPPKELFKPVEEYKESESDDEEE 250 (650)
T ss_pred ccccceeeEeccccccccHHHHHHHHHhhcCCCCceeEEEechhhhhHHHhhhhcccCChhhhccccccCcccccchhhh
Confidence 346789999999997 7889999999887 5788888765411 111
Q ss_pred ---------------c-ceEEEEEeCChHHHHHHHHhcCCeeeCCeEE
Q 021295 97 ---------------S-RGFGFITFDTEQAVDDLLAKGNKLELAGAQV 128 (314)
Q Consensus 97 ---------------~-rG~afV~F~~~~~a~~a~~~l~~~~~~gr~l 128 (314)
. -=||+|+|++.++|.++.+.++++++....+
T Consensus 251 ~~~~~~kLR~Yq~~rLkYYyAVvecDsi~tA~~vYe~CDG~EfEsS~~ 298 (650)
T KOG2318|consen 251 EDVDREKLRQYQLNRLKYYYAVVECDSIETAKAVYEECDGIEFESSAN 298 (650)
T ss_pred hhHHHHHHHHHHhhhheeEEEEEEecCchHHHHHHHhcCcceeccccc
Confidence 0 1279999999999999999999999876443
No 182
>KOG4209 consensus Splicing factor RNPS1, SR protein superfamily [RNA processing and modification]
Probab=93.13 E-value=0.12 Score=45.47 Aligned_cols=43 Identities=28% Similarity=0.591 Sum_probs=36.6
Q ss_pred CCCCCCCcccEEEEEECCHHHHHHHHH-ccCccCCcEEEEeecC
Q 021295 2 KDRKTGQPRGFGFVTYADPSVVDKVIE-DTHIINGKQVEIKRTI 44 (314)
Q Consensus 2 ~d~~tg~~kG~aFV~f~~~~~a~~A~~-~~~~i~g~~i~v~~~~ 44 (314)
+|+.++.+|+||||+|.+.+.++.+++ +...|.++.+.+.+..
T Consensus 135 ~d~~~~~~k~~~yvef~~~~~~~~ay~l~gs~i~~~~i~vt~~r 178 (231)
T KOG4209|consen 135 KDKFRGHPKGFAYVEFSSYELVEEAYKLDGSEIPGPAIEVTLKR 178 (231)
T ss_pred ccccCCCcceeEEEecccHhhhHHHhhcCCcccccccceeeeee
Confidence 577888999999999999999999999 6667888888776543
No 183
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=92.54 E-value=0.91 Score=31.56 Aligned_cols=55 Identities=16% Similarity=0.366 Sum_probs=42.2
Q ss_pred CCCHHHHHHHHhccCCeEEEEEeecCCCCCcceEEEEEeCChHHHHHHHHhcCCeeeCCeEEEE
Q 021295 67 SVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEV 130 (314)
Q Consensus 67 ~~~e~~l~~~F~~~G~v~~v~i~~~~~~g~~rG~afV~F~~~~~a~~a~~~l~~~~~~gr~l~V 130 (314)
.++-+||+..|.+|.. + +|+.|+ .|| ||.|.+.++|++|....+...+-...|.+
T Consensus 11 ~~~v~d~K~~Lr~y~~-~--~I~~d~-----tGf-YIvF~~~~Ea~rC~~~~~~~~~f~y~m~M 65 (66)
T PF11767_consen 11 GVTVEDFKKRLRKYRW-D--RIRDDR-----TGF-YIVFNDSKEAERCFRAEDGTLFFTYRMQM 65 (66)
T ss_pred CccHHHHHHHHhcCCc-c--eEEecC-----CEE-EEEECChHHHHHHHHhcCCCEEEEEEEEe
Confidence 4677999999999864 3 344443 233 89999999999999998888877766654
No 184
>KOG0114 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=92.52 E-value=0.22 Score=37.76 Aligned_cols=41 Identities=22% Similarity=0.306 Sum_probs=32.8
Q ss_pred CCCCcccEEEEEECCHHHHHHHHHcc--CccCCcEEEEeecCC
Q 021295 5 KTGQPRGFGFVTYADPSVVDKVIEDT--HIINGKQVEIKRTIP 45 (314)
Q Consensus 5 ~tg~~kG~aFV~f~~~~~a~~A~~~~--~~i~g~~i~v~~~~~ 45 (314)
.|...+|-|||.|++..+|.+|+..+ ..+..+.+.|-...+
T Consensus 52 ~~k~TrGTAFVVYedi~dAk~A~dhlsg~n~~~ryl~vlyyq~ 94 (124)
T KOG0114|consen 52 NTKETRGTAFVVYEDIFDAKKACDHLSGYNVDNRYLVVLYYQP 94 (124)
T ss_pred CccCcCceEEEEehHhhhHHHHHHHhcccccCCceEEEEecCH
Confidence 57788999999999999999999943 466777777765444
No 185
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=92.24 E-value=0.19 Score=48.71 Aligned_cols=44 Identities=23% Similarity=0.511 Sum_probs=36.7
Q ss_pred CCCCCCCCcccEEEEEECCHHHHHHHHHccC--ccCCcEEEEeecC
Q 021295 1 MKDRKTGQPRGFGFVTYADPSVVDKVIEDTH--IINGKQVEIKRTI 44 (314)
Q Consensus 1 m~d~~tg~~kG~aFV~f~~~~~a~~A~~~~~--~i~g~~i~v~~~~ 44 (314)
|++..|.-.+.|+||++++.++|.+||+.+| +|.++.|.|+.+.
T Consensus 438 VTNaRsPGaRCYGfVTMSts~eAtkCI~hLHrTELHGrmISVEkaK 483 (940)
T KOG4661|consen 438 VTNARSPGARCYGFVTMSTSAEATKCIEHLHRTELHGRMISVEKAK 483 (940)
T ss_pred eecCCCCCcceeEEEEecchHHHHHHHHHhhhhhhcceeeeeeecc
Confidence 3455566778999999999999999999665 8899999997653
No 186
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=91.56 E-value=2.5 Score=42.81 Aligned_cols=61 Identities=8% Similarity=0.132 Sum_probs=47.0
Q ss_pred CCCCHHHHHHHHhccCCe-----EEEEEeecCCCCCcceEEEEEeCChHHHHHHHHhcCCeeeCCeEEEEeecCC
Q 021295 66 SSVNEDEFKDFFMQFGDV-----QEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVKKAEP 135 (314)
Q Consensus 66 ~~~~e~~l~~~F~~~G~v-----~~v~i~~~~~~g~~rG~afV~F~~~~~a~~a~~~l~~~~~~gr~l~V~~a~~ 135 (314)
..++..+|..++.....| -.|+|..+ |.||+... +.+++.++.|++..+.+++|.|+.+..
T Consensus 497 ~~~~~~~~~~~i~~~~~~~~~~ig~i~i~~~--------~s~v~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 562 (629)
T PRK11634 497 DGVEVRHIVGAIANEGDISSRYIGNIKLFAS--------HSTIELPK-GMPGEVLQHFTRTRILNKPMNMQLLGD 562 (629)
T ss_pred cCCCHHHHHHHHHhhcCCChhhCCcEEEeCC--------ceEEEcCh-hhHHHHHHHhccccccCCceEEEECCC
Confidence 457888888888766544 36777755 88998855 457788888999999999999998753
No 187
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=91.24 E-value=0.38 Score=36.19 Aligned_cols=28 Identities=21% Similarity=0.394 Sum_probs=24.6
Q ss_pred CCCCCCCcccEEEEEECCHHHHHHHHHc
Q 021295 2 KDRKTGQPRGFGFVTYADPSVVDKVIED 29 (314)
Q Consensus 2 ~d~~tg~~kG~aFV~f~~~~~a~~A~~~ 29 (314)
.|-.|..+.|||||-|.++++|.+..+.
T Consensus 37 iDf~~~~N~GYAFVNf~~~~~~~~F~~~ 64 (97)
T PF04059_consen 37 IDFKNKCNLGYAFVNFTSPQAAIRFYKA 64 (97)
T ss_pred eeccCCCceEEEEEEcCCHHHHHHHHHH
Confidence 3667889999999999999999988874
No 188
>KOG4410 consensus 5-formyltetrahydrofolate cyclo-ligase [Coenzyme transport and metabolism]
Probab=89.98 E-value=1.4 Score=39.27 Aligned_cols=58 Identities=16% Similarity=0.194 Sum_probs=41.0
Q ss_pred ceEEEcCCCCCCCHHHHHHHHhccCCeEEEEEeecCCCCCcceEEEEEeCCh-------HHHHHHHHhcC
Q 021295 57 KKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTE-------QAVDDLLAKGN 119 (314)
Q Consensus 57 ~~l~V~nLp~~~~e~~l~~~F~~~G~v~~v~i~~~~~~g~~rG~afV~F~~~-------~~a~~a~~~l~ 119 (314)
..|+|.|||.++...||+..+.+.+.+. +.|.- . -+++-||+.|.+. +++++++..++
T Consensus 331 ~di~~~nl~rd~rv~dlk~~lr~~~~~p-m~isw---k-g~~~k~flh~~~~~~~~~~~~~~~~~~~s~~ 395 (396)
T KOG4410|consen 331 TDIKLTNLSRDIRVKDLKSELRKRECTP-MSISW---K-GHFGKCFLHFGNRKGVPSTQDDMDKVLKSLN 395 (396)
T ss_pred cceeeccCccccchHHHHHHHHhcCCCc-eeEee---e-cCCcceeEecCCccCCCCCchHHHHHhccCC
Confidence 4699999999999999999998875432 22221 1 2466899999663 46666666554
No 189
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=89.32 E-value=0.68 Score=41.15 Aligned_cols=36 Identities=28% Similarity=0.574 Sum_probs=29.2
Q ss_pred CCcceEEEcCCCCC------------CCHHHHHHHHhccCCeEEEEEe
Q 021295 54 FKTKKIFVGGIPSS------------VNEDEFKDFFMQFGDVQEHQIM 89 (314)
Q Consensus 54 ~~~~~l~V~nLp~~------------~~e~~l~~~F~~~G~v~~v~i~ 89 (314)
..+.+|++..||-. .+|+.|+..|+.||.|..|+|+
T Consensus 147 erpdti~la~ip~kwf~lkedg~~dlpse~rlr~a~eafg~ir~vdip 194 (445)
T KOG2891|consen 147 ERPDTIHLAGIPCKWFALKEDGSEDLPSEDRLRKAFEAFGEIRNVDIP 194 (445)
T ss_pred CCCCceeecCCcceeeeecccccccCChHHHHHHHHHHhccceecCCc
Confidence 35678999988843 3678899999999999888776
No 190
>PF07530 PRE_C2HC: Associated with zinc fingers; InterPro: IPR006579 This domain is present in proteins found exclusively in the arthropods, including a number of Drosophila species, the silk moth and the gypsy moth. These proteins are possibly involved in RNA binding or single strand DNA binding.
Probab=88.67 E-value=1.2 Score=31.16 Aligned_cols=63 Identities=17% Similarity=0.331 Sum_probs=45.4
Q ss_pred HHHHHHHhccC-CeEEEEEeecCCCCCcceEEEEEeCChHHHHHHHHhcCCeeeCCeEEEEeecCCC
Q 021295 71 DEFKDFFMQFG-DVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVKKAEPK 136 (314)
Q Consensus 71 ~~l~~~F~~~G-~v~~v~i~~~~~~g~~rG~afV~F~~~~~a~~a~~~l~~~~~~gr~l~V~~a~~~ 136 (314)
++|++.|...| +|..|.-+..+.+..+--.-||+++...+..++ ++-..|+++.|+|+....+
T Consensus 2 ~~I~~~L~~~G~~v~~i~~~~~~~~k~pl~mf~veL~p~~~~k~i---~~Ik~l~~~~V~vE~~~k~ 65 (68)
T PF07530_consen 2 EEIKEELKDQGHPVRNIHNMHSRNTKKPLNMFFVELEPKPNNKEI---YKIKTLCGQRVKVERPRKR 65 (68)
T ss_pred HHHHHHHHHcCCceEEEEccccCCCCCCceEEEEeeccCccccce---eehHhhCCeEEEEecCCCC
Confidence 57888888877 577787777776777777888998877664443 3345678888888876544
No 191
>smart00596 PRE_C2HC PRE_C2HC domain.
Probab=88.24 E-value=1.2 Score=31.02 Aligned_cols=63 Identities=14% Similarity=0.165 Sum_probs=45.9
Q ss_pred HHHHHHHhccC-CeEEEEEeecCCCCCcceEEEEEeCChHHHHHHHHhcCCeeeCCeEEEEeecCCC
Q 021295 71 DEFKDFFMQFG-DVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVKKAEPK 136 (314)
Q Consensus 71 ~~l~~~F~~~G-~v~~v~i~~~~~~g~~rG~afV~F~~~~~a~~a~~~l~~~~~~gr~l~V~~a~~~ 136 (314)
++|++.|++.| +|..|.-+..+.+..+--.-+|+.....+... .|+-..|+++.|.|+.....
T Consensus 2 ~~I~~~L~~~G~~v~~i~~m~~~~~r~P~nmf~vel~~~~~~~~---Il~ik~Lg~~~V~VEr~~k~ 65 (69)
T smart00596 2 SQIEEALKDIGFPVLFIHNMLNRDTKNPQNMFEVELVPAANGKE---ILNIKTLGGQRVTVERPHKR 65 (69)
T ss_pred HHHHHHHHHcCCceeEEEcccccCCCCcceeEEEEeeecCCCcc---eEeehhhCCeeEEEecCccc
Confidence 47888898888 57888888887777777778888877655444 33445678888888765543
No 192
>KOG4213 consensus RNA-binding protein La [RNA processing and modification]
Probab=87.33 E-value=0.84 Score=37.97 Aligned_cols=60 Identities=13% Similarity=0.176 Sum_probs=38.6
Q ss_pred CCcceEEEcCCCCCCCHHHHHHHHhccCCeEEEEEeecCCC-CCcceEEEEEeCChHHHHHHHHh
Q 021295 54 FKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHST-SRSRGFGFITFDTEQAVDDLLAK 117 (314)
Q Consensus 54 ~~~~~l~V~nLp~~~~e~~l~~~F~~~G~v~~v~i~~~~~~-g~~rG~afV~F~~~~~a~~a~~~ 117 (314)
+..+++|.. +.+...++|.++.+ ++++.|.+-+.... -..+|-.||+|.+.+.+.++++.
T Consensus 109 ~~~r~v~~K--~td~ql~~l~qw~~--~k~~nv~mr~~~~k~~~fkGsvkv~f~tk~qa~a~~~~ 169 (205)
T KOG4213|consen 109 IKERTVYKK--ITDDQLDDLNQWAS--GKGHNVKMRRHGNKAHPFKGSVKVTFQTKEQAFANDDT 169 (205)
T ss_pred HHHhhhhcc--CCHHHHHHHHHHhc--ccceEeeccccCCCCCCCCCceEEEeecHHHHHhhhhh
Confidence 345667765 22333344444444 67877776654322 24678899999999999998876
No 193
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=86.81 E-value=1.3 Score=32.26 Aligned_cols=36 Identities=6% Similarity=0.268 Sum_probs=25.1
Q ss_pred cccEEEEEECCHHHHHHHHH--ccCccCCcEEEEeecC
Q 021295 9 PRGFGFVTYADPSVVDKVIE--DTHIINGKQVEIKRTI 44 (314)
Q Consensus 9 ~kG~aFV~f~~~~~a~~A~~--~~~~i~g~~i~v~~~~ 44 (314)
+.+-|.|.|.+.+.|+.|.+ +..++-+..|.|....
T Consensus 38 ~~~tAilrF~~~~~A~RA~KRmegEdVfG~kI~v~~~~ 75 (90)
T PF11608_consen 38 SGGTAILRFPNQEFAERAQKRMEGEDVFGNKISVSFSP 75 (90)
T ss_dssp -TT-EEEEESSHHHHHHHHHHHTT--SSSS--EEESS-
T ss_pred eCCEEEEEeCCHHHHHHHHHhhcccccccceEEEEEcC
Confidence 45789999999999999999 4457888888888754
No 194
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=86.22 E-value=0.38 Score=46.73 Aligned_cols=24 Identities=29% Similarity=0.553 Sum_probs=21.6
Q ss_pred CCCcccEEEEEECCHHHHHHHHHc
Q 021295 6 TGQPRGFGFVTYADPSVVDKVIED 29 (314)
Q Consensus 6 tg~~kG~aFV~f~~~~~a~~A~~~ 29 (314)
.+.++||.|++|++..+|++|+++
T Consensus 101 ~ggtkG~lf~E~~~~~~A~~aVK~ 124 (698)
T KOG2314|consen 101 EGGTKGYLFVEYASMRDAKKAVKS 124 (698)
T ss_pred cCCeeeEEEEEecChhhHHHHHHh
Confidence 344999999999999999999995
No 195
>PF03468 XS: XS domain; InterPro: IPR005380 The XS (rice gene X and SGS3) domain is found in a family of plant proteins including gene X Q9SBW2 from SWISSPROT and SGS3 Q9LDX1 from SWISSPROT. SGS3 is thought to be involved in post-transcriptional gene silencing (PTGS). This domain contains a conserved aspartate residue that may be functionally important. The XS domain containing proteins contain coiled-coils, which suggests that they will oligomerise. Most coiled-coil proteins form either a dimeric or a trimeric structure. It is possible that different members of the XS domain family could oligomerise via their coiled-coils forming a variety of complexes [].; PDB: 4E8U_C.
Probab=85.10 E-value=2.2 Score=33.25 Aligned_cols=44 Identities=14% Similarity=0.418 Sum_probs=25.7
Q ss_pred CHHHHHHHHhccCCeEEEEEeecCCCCCcceEEEEEeCCh-HHHHHHH
Q 021295 69 NEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTE-QAVDDLL 115 (314)
Q Consensus 69 ~e~~l~~~F~~~G~v~~v~i~~~~~~g~~rG~afV~F~~~-~~a~~a~ 115 (314)
+.++|++.|+.|..++ |+.+.++. -+.++|+|+|.+. .-.+.|+
T Consensus 30 ~~~~l~~~l~~f~p~k-v~~l~~~~--gh~g~aiv~F~~~w~Gf~~A~ 74 (116)
T PF03468_consen 30 SNEELLDKLAEFNPLK-VKPLYGKQ--GHTGFAIVEFNKDWSGFKNAM 74 (116)
T ss_dssp -SHHHHHHHHH---SE-EEEEEETT--EEEEEEEEE--SSHHHHHHHH
T ss_pred CHHHHHHHHHhcCCce-eEECcCCC--CCcEEEEEEECCChHHHHHHH
Confidence 5589999999998775 55555533 4789999999764 3333333
No 196
>PF10567 Nab6_mRNP_bdg: RNA-recognition motif; InterPro: IPR018885 This conserved domain is found in fungal proteins and appears to be involved in RNA-processing. It binds to poly-adenylated RNA, interacts genetically with mRNA 3'-end processing factors, co-purifies with the nuclear cap-binding protein Cbp20p, and is found in complexes containing other translation factors, such as EIF4G as in P39935 from SWISSPROT and P39936 from SWISSPROT.
Probab=83.82 E-value=2.1 Score=38.45 Aligned_cols=83 Identities=12% Similarity=0.342 Sum_probs=60.2
Q ss_pred CCCCcceEEEcCCCCCCCHHHHHHHHhccCCeEEEEEeecCC-------CCCcceEEEEEeCChHHHHH----HHHhcCC
Q 021295 52 KDFKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHS-------TSRSRGFGFITFDTEQAVDD----LLAKGNK 120 (314)
Q Consensus 52 ~~~~~~~l~V~nLp~~~~e~~l~~~F~~~G~v~~v~i~~~~~-------~g~~rG~afV~F~~~~~a~~----a~~~l~~ 120 (314)
++..++.|.+.||..+++-.++.+.|.+|++|+.|.++.+.. ..+..-.+.+.|-+.+.+.. .+++|+.
T Consensus 11 D~YrTRSLLfeNv~~sidLh~Fl~~fv~~~pIESiYL~~~~~~~~d~~~~d~~~~SilLSFlsr~~CLdFYNnvLQrLsE 90 (309)
T PF10567_consen 11 DEYRTRSLLFENVNNSIDLHSFLTKFVKFGPIESIYLIKSNDKPSDDYNDDKNNQSILLSFLSREICLDFYNNVLQRLSE 90 (309)
T ss_pred ccceeHHHHHhhccccccHHHHHHHhhccCceeEEEEecCCCcccccccccccceEEEEeeechHHHHHHHHHHHHHHHH
Confidence 456788999999999999999999999999999999998751 22234567889988876644 3333332
Q ss_pred --eeeCCeEEEEeecC
Q 021295 121 --LELAGAQVEVKKAE 134 (314)
Q Consensus 121 --~~~~gr~l~V~~a~ 134 (314)
..+....|.|.+..
T Consensus 91 fK~~L~S~~L~lsFV~ 106 (309)
T PF10567_consen 91 FKTKLKSESLTLSFVS 106 (309)
T ss_pred HHHhcCCcceeEEEEE
Confidence 33556666666544
No 197
>KOG3973 consensus Uncharacterized conserved glycine-rich protein [Function unknown]
Probab=83.09 E-value=24 Score=32.65 Aligned_cols=8 Identities=13% Similarity=0.455 Sum_probs=3.9
Q ss_pred HHHHHHHh
Q 021295 71 DEFKDFFM 78 (314)
Q Consensus 71 ~~l~~~F~ 78 (314)
++|.+.|.
T Consensus 243 ~ei~~~~~ 250 (465)
T KOG3973|consen 243 EEIQSILS 250 (465)
T ss_pred HHHHHHHH
Confidence 44555553
No 198
>KOG4019 consensus Calcineurin-mediated signaling pathway inhibitor DSCR1 [Signal transduction mechanisms; General function prediction only]
Probab=82.35 E-value=1.3 Score=36.97 Aligned_cols=75 Identities=23% Similarity=0.267 Sum_probs=51.3
Q ss_pred ceEEEcCCCCCCCH-----HHHHHHHhccCCeEEEEEeecCCCCCcceEEEEEeCChHHHHHHHHhcCCeeeCCe-EEEE
Q 021295 57 KKIFVGGIPSSVNE-----DEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGA-QVEV 130 (314)
Q Consensus 57 ~~l~V~nLp~~~~e-----~~l~~~F~~~G~v~~v~i~~~~~~g~~rG~afV~F~~~~~a~~a~~~l~~~~~~gr-~l~V 130 (314)
.+|++.+|+..+-. ...+.+|.++-+++...+++ +....-|.|.+++.|..|..+++...|.++ .++.
T Consensus 11 ~~~~~c~i~~~VF~~~~~k~~~~~lFrq~n~~~~fq~lr------sfrrvRi~f~~p~~a~~a~i~~~~~~f~~~~~~k~ 84 (193)
T KOG4019|consen 11 TAIIACDIHEEVFVNREDKALFENLFRQINEDATFQLLR------SFRRVRINFSNPEAAADARIKLHSTSFNGKNELKL 84 (193)
T ss_pred ceeeeecccHHhhccHHHHHHHHhHHhhhCcchHHHHHH------hhceeEEeccChhHHHHHHHHhhhcccCCCceEEE
Confidence 45666667665422 23345566655555544443 244678999999999999999999999988 7777
Q ss_pred eecCCCC
Q 021295 131 KKAEPKK 137 (314)
Q Consensus 131 ~~a~~~~ 137 (314)
-+|.+..
T Consensus 85 yfaQ~~~ 91 (193)
T KOG4019|consen 85 YFAQPGH 91 (193)
T ss_pred EEccCCC
Confidence 6666543
No 199
>KOG0533 consensus RRM motif-containing protein [RNA processing and modification]
Probab=82.27 E-value=2.9 Score=36.92 Aligned_cols=43 Identities=12% Similarity=0.326 Sum_probs=36.1
Q ss_pred CCCCcccEEEEEECCHHHHHHHHH--ccCccCCcEEEEeecCCCC
Q 021295 5 KTGQPRGFGFVTYADPSVVDKVIE--DTHIINGKQVEIKRTIPKG 47 (314)
Q Consensus 5 ~tg~~kG~aFV~f~~~~~a~~A~~--~~~~i~g~~i~v~~~~~~~ 47 (314)
.++++.|.|-|+|+..++|++||+ +...++++.|.+....+..
T Consensus 119 ~~G~s~Gta~v~~~r~~DA~~avk~~~gv~ldG~~mk~~~i~~~~ 163 (243)
T KOG0533|consen 119 RAGRSLGTADVSFNRRDDAERAVKKYNGVALDGRPMKIEIISSPS 163 (243)
T ss_pred CCCCCCccceeeecchHhHHHHHHHhcCcccCCceeeeEEecCcc
Confidence 488999999999999999999999 5567889998887765443
No 200
>PF02714 DUF221: Domain of unknown function DUF221; InterPro: IPR003864 This domain is found in a family of hypothetical transmembrane proteins none of which have any known function, the aligned region is at 538 residues at maximum length.; GO: 0016020 membrane
Probab=80.93 E-value=2.7 Score=38.68 Aligned_cols=57 Identities=9% Similarity=0.129 Sum_probs=37.0
Q ss_pred EEEEECCHHHHHHHHHccCccCCcEEEEeecCCCCCCCCCCCCcceEEEcCCCCCCCHHHHHHHHhc
Q 021295 13 GFVTYADPSVVDKVIEDTHIINGKQVEIKRTIPKGAVGSKDFKTKKIFVGGIPSSVNEDEFKDFFMQ 79 (314)
Q Consensus 13 aFV~f~~~~~a~~A~~~~~~i~g~~i~v~~~~~~~~~~~~~~~~~~l~V~nLp~~~~e~~l~~~F~~ 79 (314)
|||+|+++++|+.|++.....+.+.+.++.+. +++.|+=.||..+..+..++.++..
T Consensus 1 aFVtF~~~~~a~~~~q~~~~~~~~~~~v~~AP----------eP~DI~W~NL~~~~~~r~~R~~~~~ 57 (325)
T PF02714_consen 1 AFVTFNSQKSAQIALQLLLSKRPNSWRVSPAP----------EPDDIIWENLSISSKQRFLRRIIVN 57 (325)
T ss_pred CEEEECCHHHHHHHHHHHhcCCCCCceEeeCC----------CcccccccccCCChHHHHHHHHHHH
Confidence 79999999999999995444444444544433 2344555777666666666655443
No 201
>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms]
Probab=79.36 E-value=2.1 Score=40.91 Aligned_cols=38 Identities=26% Similarity=0.589 Sum_probs=30.9
Q ss_pred CcccEEEEEECCHHHHHHHHH-ccCccCCcEEEEeecCC
Q 021295 8 QPRGFGFVTYADPSVVDKVIE-DTHIINGKQVEIKRTIP 45 (314)
Q Consensus 8 ~~kG~aFV~f~~~~~a~~A~~-~~~~i~g~~i~v~~~~~ 45 (314)
++..|+||+|++.++++.||+ +...|.+++|.|+...+
T Consensus 328 ~~~~fgFV~f~~~~~~~~~i~Asp~~ig~~kl~Veek~~ 366 (419)
T KOG0116|consen 328 KNPCFGFVEFENAAAVQNAIEASPLEIGGRKLNVEEKRP 366 (419)
T ss_pred CcCceEEEEEeecchhhhhhhcCccccCCeeEEEEeccc
Confidence 334899999999999999999 65678888888876543
No 202
>KOG3262 consensus H/ACA small nucleolar RNP component GAR1 [Translation, ribosomal structure and biogenesis]
Probab=78.16 E-value=30 Score=29.05 Aligned_cols=20 Identities=10% Similarity=0.267 Sum_probs=10.5
Q ss_pred HHHHHHHHhccCCeEEEEEe
Q 021295 70 EDEFKDFFMQFGDVQEHQIM 89 (314)
Q Consensus 70 e~~l~~~F~~~G~v~~v~i~ 89 (314)
.++|-++=|-|++|.++.+.
T Consensus 88 k~qIGKVDEIfG~i~d~~fs 107 (215)
T KOG3262|consen 88 KEQIGKVDEIFGPINDVHFS 107 (215)
T ss_pred hhhhcchhhhcccccccEEE
Confidence 34454444556666665543
No 203
>COG5638 Uncharacterized conserved protein [Function unknown]
Probab=77.18 E-value=8.1 Score=36.38 Aligned_cols=37 Identities=22% Similarity=0.354 Sum_probs=29.9
Q ss_pred CCcceEEEcCCCCC-CCHHHHHHHHhcc----CCeEEEEEee
Q 021295 54 FKTKKIFVGGIPSS-VNEDEFKDFFMQF----GDVQEHQIMR 90 (314)
Q Consensus 54 ~~~~~l~V~nLp~~-~~e~~l~~~F~~~----G~v~~v~i~~ 90 (314)
..++.|-|-||.|+ +...+|..+|+.| |+|..|.|.+
T Consensus 144 ~~tkrLAvVnmDWd~v~a~DLf~~fsSf~P~ggkl~kV~iyp 185 (622)
T COG5638 144 NPTKRLAVVNMDWDRVDAKDLFKIFSSFLPYGGKLSKVKIYP 185 (622)
T ss_pred CcccceeEeecccccchHHHHHHHHHhhCCCCCccceeEech
Confidence 45789999999996 7788999999877 6787777654
No 204
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=76.83 E-value=3.4 Score=33.45 Aligned_cols=35 Identities=23% Similarity=0.367 Sum_probs=27.7
Q ss_pred EEEEECCHHHHHHHHH-ccCccCCcEEEEeecCCCC
Q 021295 13 GFVTYADPSVVDKVIE-DTHIINGKQVEIKRTIPKG 47 (314)
Q Consensus 13 aFV~f~~~~~a~~A~~-~~~~i~g~~i~v~~~~~~~ 47 (314)
-.|+|.+-+.|.+|++ +...|.++.|.++..+|..
T Consensus 73 mwVTF~dg~sALaals~dg~~v~g~~l~i~LKtpdW 108 (146)
T PF08952_consen 73 MWVTFRDGQSALAALSLDGIQVNGRTLKIRLKTPDW 108 (146)
T ss_dssp EEEEESSCHHHHHHHHGCCSEETTEEEEEEE-----
T ss_pred EEEEECccHHHHHHHccCCcEECCEEEEEEeCCccH
Confidence 5799999999999999 7789999999999877653
No 205
>PF07292 NID: Nmi/IFP 35 domain (NID); InterPro: IPR009909 This entry represents a domain of approximately 90 residues that is tandemly repeated within interferon-induced 35 kDa protein (IFP 35) and the homologous N-myc-interactor (Nmi). This domain mediates Nmi-Nmi protein interactions and subcellular localisation [].
Probab=76.71 E-value=3.5 Score=30.40 Aligned_cols=31 Identities=32% Similarity=0.485 Sum_probs=23.9
Q ss_pred EEEEeCChHHHHHHHHh-cCCeeeCCeEEEEe
Q 021295 101 GFITFDTEQAVDDLLAK-GNKLELAGAQVEVK 131 (314)
Q Consensus 101 afV~F~~~~~a~~a~~~-l~~~~~~gr~l~V~ 131 (314)
|+|+|++++.|++.+++ -+.+.++...+.|+
T Consensus 1 AlITF~e~~VA~~i~~~~~~~v~l~~~~~~V~ 32 (88)
T PF07292_consen 1 ALITFEEEGVAQRILKKKKHPVPLEDCCVRVK 32 (88)
T ss_pred CEEEeCcHHHHHHHHhCCEEEEEECCEEEEEE
Confidence 78999999999999985 35566777665554
No 206
>KOG4008 consensus rRNA processing protein RRP7 [RNA processing and modification]
Probab=75.78 E-value=3.7 Score=35.78 Aligned_cols=34 Identities=29% Similarity=0.497 Sum_probs=29.0
Q ss_pred CCCCcceEEEcCCCCCCCHHHHHHHHhccCCeEE
Q 021295 52 KDFKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQE 85 (314)
Q Consensus 52 ~~~~~~~l~V~nLp~~~~e~~l~~~F~~~G~v~~ 85 (314)
.....++|||-|||..++++.|+.+.+.++.|..
T Consensus 36 ~~~eKd~lfl~Nvp~~~tee~lkr~vsqlg~vq~ 69 (261)
T KOG4008|consen 36 NSNEKDCLFLVNVPLLSTEEHLKRFVSQLGHVQE 69 (261)
T ss_pred ccccccceeeecccccccHHHHHHHHHHhhhhhh
Confidence 4456789999999999999999999999886543
No 207
>TIGR03636 L23_arch archaeal ribosomal protein L23. This model describes the archaeal ribosomal protein L23P and rigorously excludes the bacterial counterpart L23. In order to capture every known instance of archaeal L23P, the trusted cutoff is set lower than a few of the highest scoring eukaryotic cytosolic ribosomal counterparts.
Probab=74.87 E-value=10 Score=27.14 Aligned_cols=57 Identities=7% Similarity=0.131 Sum_probs=39.8
Q ss_pred EEEcCCCCCCCHHHHHHHHhcc-C-CeEEEEEeecCCCCCcceEEEEEeCChHHHHHHHHhc
Q 021295 59 IFVGGIPSSVNEDEFKDFFMQF-G-DVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKG 118 (314)
Q Consensus 59 l~V~nLp~~~~e~~l~~~F~~~-G-~v~~v~i~~~~~~g~~rG~afV~F~~~~~a~~a~~~l 118 (314)
-|+-.++..++..||++.+++. + +|..|..+.-+. ..--|||++...++|.++..++
T Consensus 16 ~y~F~V~~~anK~eIK~avE~lf~VkV~~Vnt~~~~~---~~KKA~VtL~~g~~a~~va~k~ 74 (77)
T TIGR03636 16 KLTFIVDRKATKGDIKRAVEKLFDVKVEKVNTLITPR---GEKKAYVKLAEEYAAEEIASRL 74 (77)
T ss_pred EEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcCC---CceEEEEEECCCCcHHHHHHhh
Confidence 4455577889999999999874 3 466666655432 2225999998888887776553
No 208
>KOG2295 consensus C2H2 Zn-finger protein [General function prediction only]
Probab=73.53 E-value=0.62 Score=45.18 Aligned_cols=73 Identities=11% Similarity=0.112 Sum_probs=54.8
Q ss_pred CcceEEEcCCCCCCCHHHHHHHHhccCCeEEEEEeecCCCCCcceEEEEEeCChHHHHHHHHhcCCeeeCCeE
Q 021295 55 KTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQ 127 (314)
Q Consensus 55 ~~~~l~V~nLp~~~~e~~l~~~F~~~G~v~~v~i~~~~~~g~~rG~afV~F~~~~~a~~a~~~l~~~~~~gr~ 127 (314)
.+++|||.|+++.++-++|..+++.+--+.++.+..+....+.+-+..|+|+---.+..|+.+||++.+....
T Consensus 230 ke~sll~rni~Pnis~aeIe~~ck~i~~~lrfals~~~aek~~~r~lwv~fk~~~ni~~a~~aLn~irl~s~~ 302 (648)
T KOG2295|consen 230 KECSLLVRNILPNISVAEIENLCKGIPGFLRFALSTINAEKNFERRLWVTFKRGTNIKEACWALNGIRLRSNF 302 (648)
T ss_pred HHHHHHHhccCCcccHHHHHHHhccCchheeeeccCchHHHHHHHHhhHhhccccchHHHHHHhhhccccccc
Confidence 4578999999999999999999998866666655544333344556789998888888888888776655443
No 209
>PRK14548 50S ribosomal protein L23P; Provisional
Probab=72.47 E-value=12 Score=27.38 Aligned_cols=56 Identities=5% Similarity=0.126 Sum_probs=40.0
Q ss_pred EEcCCCCCCCHHHHHHHHhcc-C-CeEEEEEeecCCCCCcceEEEEEeCChHHHHHHHHhc
Q 021295 60 FVGGIPSSVNEDEFKDFFMQF-G-DVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKG 118 (314)
Q Consensus 60 ~V~nLp~~~~e~~l~~~F~~~-G-~v~~v~i~~~~~~g~~rG~afV~F~~~~~a~~a~~~l 118 (314)
|+--++..++..+|++.++++ + +|+.|..+..+. ..--|||+|...++|.++..++
T Consensus 24 y~F~V~~~anK~eIK~AvE~lf~VkV~~VnT~~~~~---~~KKA~V~L~~g~~A~~va~ki 81 (84)
T PRK14548 24 LTFIVDRRATKPDIKRAVEELFDVKVEKVNTLITPK---GEKKAYVKLAEEYDAEEIASRL 81 (84)
T ss_pred EEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcCC---CcEEEEEEeCCCCcHHHHHHhh
Confidence 344567788999999999874 3 566777665532 2235999999998888876653
No 210
>PRK11901 hypothetical protein; Reviewed
Probab=71.64 E-value=8.2 Score=35.39 Aligned_cols=55 Identities=5% Similarity=0.189 Sum_probs=38.8
Q ss_pred CCCCCCHHHHHHHHhccCCeEEEEEeecCCCCCcceEEEE--EeCChHHHHHHHHhcCC
Q 021295 64 IPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFI--TFDTEQAVDDLLAKGNK 120 (314)
Q Consensus 64 Lp~~~~e~~l~~~F~~~G~v~~v~i~~~~~~g~~rG~afV--~F~~~~~a~~a~~~l~~ 120 (314)
|--..++++|++|.+++. +..++|......++. -|.+| +|.+.++|++||+.|-.
T Consensus 250 L~Aas~~~~L~~f~~~~~-L~~~~VYqT~RnGkp-WYVVvyG~Y~Sr~eAk~Ai~sLPa 306 (327)
T PRK11901 250 LSSASRSDTLNAYAKKQN-LSHYHVYETKRDGKP-WYVLVSGNYASSAEAKRAIATLPA 306 (327)
T ss_pred eecCCCHHHHHHHHHHcC-cCceEEEEEEECCce-EEEEEecCcCCHHHHHHHHHhCCH
Confidence 334456888999888874 566777766554443 24444 78999999999998744
No 211
>PF15513 DUF4651: Domain of unknown function (DUF4651)
Probab=71.23 E-value=10 Score=25.95 Aligned_cols=20 Identities=25% Similarity=0.532 Sum_probs=16.6
Q ss_pred HHHHHHHhccCCeEEEEEee
Q 021295 71 DEFKDFFMQFGDVQEHQIMR 90 (314)
Q Consensus 71 ~~l~~~F~~~G~v~~v~i~~ 90 (314)
++|+++|+..|+|..+-|-.
T Consensus 9 ~~iR~~fs~lG~I~vLYvn~ 28 (62)
T PF15513_consen 9 AEIRQFFSQLGEIAVLYVNP 28 (62)
T ss_pred HHHHHHHHhcCcEEEEEEcc
Confidence 78999999999998766543
No 212
>PF00403 HMA: Heavy-metal-associated domain; InterPro: IPR006121 Proteins that transport heavy metals in micro-organisms and mammals share similarities in their sequences and structures. These proteins provide an important focus for research, some being involved in bacterial resistance to toxic metals, such as lead and cadmium, while others are involved in inherited human syndromes, such as Wilson's and Menke's diseases []. A conserved domain has been found in a number of these heavy metal transport or detoxification proteins []. The domain, which has been termed Heavy-Metal-Associated (HMA), contains two conserved cysteines that are probably involved in metal binding. Structure solution of the fourth HMA domain of the Menke's copper transporting ATPase shows a well-defined structure comprising a four-stranded antiparallel beta-sheet and two alpha helices packed in an alpha-beta sandwich fold []. This fold is common to other domains and is classified as "ferredoxin-like".; GO: 0046872 metal ion binding, 0030001 metal ion transport; PDB: 2VOY_A 1P6T_A 1KQK_A 2RML_A 1JWW_A 3K7R_F 1FES_A 1CC8_A 1FD8_A 2GGP_A ....
Probab=70.28 E-value=21 Score=23.67 Aligned_cols=54 Identities=11% Similarity=0.189 Sum_probs=39.3
Q ss_pred eEEEcCCCCCCCHHHHHHHHhccCCeEEEEEeecCCCCCcceEEEEEeCCh----HHHHHHHHh
Q 021295 58 KIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTE----QAVDDLLAK 117 (314)
Q Consensus 58 ~l~V~nLp~~~~e~~l~~~F~~~G~v~~v~i~~~~~~g~~rG~afV~F~~~----~~a~~a~~~ 117 (314)
+|.|.+|.=..-...|++.+.+.--|..+.+-.. ...+.|+|+.. +++.++|++
T Consensus 1 t~~v~~m~C~~C~~~v~~~l~~~~GV~~v~vd~~------~~~v~v~~~~~~~~~~~i~~~i~~ 58 (62)
T PF00403_consen 1 TFKVPGMTCEGCAKKVEKALSKLPGVKSVKVDLE------TKTVTVTYDPDKTSIEKIIEAIEK 58 (62)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTSTTEEEEEEETT------TTEEEEEESTTTSCHHHHHHHHHH
T ss_pred CEEECCcccHHHHHHHHHHHhcCCCCcEEEEECC------CCEEEEEEecCCCCHHHHHHHHHH
Confidence 4667777777777889999999888988887654 23688888754 555666655
No 213
>PRK10629 EnvZ/OmpR regulon moderator; Provisional
Probab=70.06 E-value=31 Score=27.25 Aligned_cols=59 Identities=10% Similarity=0.020 Sum_probs=41.1
Q ss_pred CCHHHHHHHHhccC-CeEEEEEeecCCCCCcceEEEEEeCChHHHHHHHHhcCCeeeCCeEEEEeecC
Q 021295 68 VNEDEFKDFFMQFG-DVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVKKAE 134 (314)
Q Consensus 68 ~~e~~l~~~F~~~G-~v~~v~i~~~~~~g~~rG~afV~F~~~~~a~~a~~~l~~~~~~gr~l~V~~a~ 134 (314)
.+.+.|++++++-+ .++.|..-.+ -..|.|+++|+-.+|.+.|....-+...|.+..+.
T Consensus 50 ~~~~~v~~~L~~~gI~~ksi~~~~~--------~~~irf~~~~~Ql~Ak~vL~~~L~~~y~VAlnl~p 109 (127)
T PRK10629 50 PDGFYVYQHLDANGIHIKSITPEND--------SLLIRFDSPEQSAAAKEVLDRTLPHGYIIAQQDDN 109 (127)
T ss_pred chHHHHHHHHHHCCCCcceEEeeCC--------EEEEEECCHHHHHHHHHHHHHHcCCCCEEEEecCC
Confidence 56688889998876 3445544322 58999999998888888776655555566655544
No 214
>PF02714 DUF221: Domain of unknown function DUF221; InterPro: IPR003864 This domain is found in a family of hypothetical transmembrane proteins none of which have any known function, the aligned region is at 538 residues at maximum length.; GO: 0016020 membrane
Probab=66.81 E-value=5.7 Score=36.50 Aligned_cols=39 Identities=15% Similarity=0.100 Sum_probs=28.2
Q ss_pred EEEEeCChHHHHHHHHhcCCeeeCCeEEEEeecCCCCCCCC
Q 021295 101 GFITFDTEQAVDDLLAKGNKLELAGAQVEVKKAEPKKPNLP 141 (314)
Q Consensus 101 afV~F~~~~~a~~a~~~l~~~~~~gr~l~V~~a~~~~~~~~ 141 (314)
|||+|+++++|+.|++.+.... .+.++|+.|.+.++...
T Consensus 1 aFVtF~~~~~a~~~~q~~~~~~--~~~~~v~~APeP~DI~W 39 (325)
T PF02714_consen 1 AFVTFNSQKSAQIALQLLLSKR--PNSWRVSPAPEPDDIIW 39 (325)
T ss_pred CEEEECCHHHHHHHHHHHhcCC--CCCceEeeCCCcccccc
Confidence 7999999999999999644333 35567777776655443
No 215
>PF14026 DUF4242: Protein of unknown function (DUF4242)
Probab=66.75 E-value=44 Score=23.83 Aligned_cols=57 Identities=12% Similarity=0.158 Sum_probs=40.5
Q ss_pred EEEcCCCCCCCHHHHHHHHhcc-------CCeEEEEEeecCCCCCcceEEEEEeCChHHHHHHHHh
Q 021295 59 IFVGGIPSSVNEDEFKDFFMQF-------GDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAK 117 (314)
Q Consensus 59 l~V~nLp~~~~e~~l~~~F~~~-------G~v~~v~i~~~~~~g~~rG~afV~F~~~~~a~~a~~~ 117 (314)
|...+||..+|.++|.++..+. ..|.-++...+.+. .|-||+.+=.|+|+++++.++
T Consensus 3 mver~~p~~it~e~l~~~~~~~~~~~~~~~~V~w~~s~v~~d~--~k~~Cly~Ap~~eaV~~~~~~ 66 (77)
T PF14026_consen 3 MVERDFPGGITAEDLAAAHAKSCAVQAEMPGVQWLRSYVSEDD--GKIFCLYEAPDEEAVREHARR 66 (77)
T ss_pred EEEEeCCCCCCHHHHHHHHHHhHHHHhhcCCeEEEEEEEecCC--CeEEEEEECCCHHHHHHHHHH
Confidence 4567889889999988776543 34544444444322 367999999999999998887
No 216
>KOG4365 consensus Uncharacterized conserved protein [Function unknown]
Probab=65.57 E-value=0.95 Score=42.77 Aligned_cols=76 Identities=9% Similarity=-0.122 Sum_probs=54.3
Q ss_pred ceEEEcCCCCCCCHHHHHHHHhccCCeEEEEEeecCCCCCcceEEEEEeCChHHHHHHHHhcCCeeeCCeEEEEeec
Q 021295 57 KKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVKKA 133 (314)
Q Consensus 57 ~~l~V~nLp~~~~e~~l~~~F~~~G~v~~v~i~~~~~~g~~rG~afV~F~~~~~a~~a~~~l~~~~~~gr~l~V~~a 133 (314)
.+.||..||..+++++|.-+|+.++.|..+.+.+-.+.+..+..+||+-... ++..||..+.-..+.+..++|..+
T Consensus 4 ~~~~l~d~~~~~~~~~~~~~~~d~~~i~~~d~~~~~~~~~~~v~~f~~~~~~-~~~~~i~~~k~q~~~~~~~r~~~~ 79 (572)
T KOG4365|consen 4 MKKSLKDSVASNNKDQNSMKHEDPSIISMEDGSPYVNGSLGEVTPFQHAKKA-NGPNYIQPQKRQTTFESQDRKAVS 79 (572)
T ss_pred hhhhHhhcccccccchhhhhccCCcceeeccCCccccCCcceeeeeeeeecc-CcccccCHHHHhhhhhhhhhhhcC
Confidence 3457888999999999999999999999998887777777788899887553 334444443334444444555444
No 217
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=61.28 E-value=5 Score=36.95 Aligned_cols=26 Identities=23% Similarity=0.617 Sum_probs=23.3
Q ss_pred CCCCCCcccEEEEEECCHHHHHHHHH
Q 021295 3 DRKTGQPRGFGFVTYADPSVVDKVIE 28 (314)
Q Consensus 3 d~~tg~~kG~aFV~f~~~~~a~~A~~ 28 (314)
++..+.|||||+|...++.++++.|+
T Consensus 117 NR~NGQSKG~AL~~~~SdAa~Kq~Me 142 (498)
T KOG4849|consen 117 NRTNGQSKGYALLVLNSDAAVKQTME 142 (498)
T ss_pred cccCCcccceEEEEecchHHHHHHHH
Confidence 56789999999999999998888887
No 218
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=60.49 E-value=1.1e+02 Score=26.06 Aligned_cols=56 Identities=16% Similarity=0.188 Sum_probs=32.4
Q ss_pred CHHHHHHHHHccCccCCcEEEEeecCCCCCCCCCCCCcceEEEcCCCCCCCHHHHHHHHh
Q 021295 19 DPSVVDKVIEDTHIINGKQVEIKRTIPKGAVGSKDFKTKKIFVGGIPSSVNEDEFKDFFM 78 (314)
Q Consensus 19 ~~~~a~~A~~~~~~i~g~~i~v~~~~~~~~~~~~~~~~~~l~V~nLp~~~~e~~l~~~F~ 78 (314)
+++.++...++...+.-..+.+......+.....+ +...|||+.= .+.++|.+.+.
T Consensus 67 ~~~a~~~~~~N~~~fg~~n~~vv~g~Ap~~L~~~~-~~daiFIGGg---~~i~~ile~~~ 122 (187)
T COG2242 67 DEEALELIERNAARFGVDNLEVVEGDAPEALPDLP-SPDAIFIGGG---GNIEEILEAAW 122 (187)
T ss_pred CHHHHHHHHHHHHHhCCCcEEEEeccchHhhcCCC-CCCEEEECCC---CCHHHHHHHHH
Confidence 33433333335556666777777666555544333 7889999875 44455554443
No 219
>COG3254 Uncharacterized conserved protein [Function unknown]
Probab=59.57 E-value=76 Score=24.13 Aligned_cols=45 Identities=18% Similarity=0.269 Sum_probs=31.6
Q ss_pred HHHHHHHHhccCCeEEEEEeecCCCCCcceEEEEEeCChHHHHHHHHh
Q 021295 70 EDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAK 117 (314)
Q Consensus 70 e~~l~~~F~~~G~v~~v~i~~~~~~g~~rG~afV~F~~~~~a~~a~~~ 117 (314)
+.+|.++++++| |..-.|..|..+ ..-|+++|+.|.++..++|..
T Consensus 26 WPE~~a~lk~ag-i~nYSIfLde~~--n~lFgy~E~~d~~a~m~~~a~ 70 (105)
T COG3254 26 WPELLALLKEAG-IRNYSIFLDEEE--NLLFGYWEYEDFEADMAKMAE 70 (105)
T ss_pred cHHHHHHHHHcC-CceeEEEecCCc--ccEEEEEEEcChHHHHHHHhC
Confidence 378888888887 677777776544 355999999966655555543
No 220
>PF14893 PNMA: PNMA
Probab=57.00 E-value=11 Score=34.94 Aligned_cols=25 Identities=24% Similarity=0.476 Sum_probs=21.6
Q ss_pred CcceEEEcCCCCCCCHHHHHHHHhc
Q 021295 55 KTKKIFVGGIPSSVNEDEFKDFFMQ 79 (314)
Q Consensus 55 ~~~~l~V~nLp~~~~e~~l~~~F~~ 79 (314)
.-+.|.|.+||.+|+|+||++.+..
T Consensus 17 ~~r~lLv~giP~dc~~~ei~e~l~~ 41 (331)
T PF14893_consen 17 PQRALLVLGIPEDCEEAEIEEALQA 41 (331)
T ss_pred hhhhheeecCCCCCCHHHHHHHHHH
Confidence 4578999999999999999988764
No 221
>KOG0023 consensus Alcohol dehydrogenase, class V [Secondary metabolites biosynthesis, transport and catabolism]
Probab=56.60 E-value=1.3e+02 Score=27.94 Aligned_cols=31 Identities=13% Similarity=0.065 Sum_probs=20.7
Q ss_pred EEeCChHHHHHHHHhcCCeeeCCeEEEEeecC
Q 021295 103 ITFDTEQAVDDLLAKGNKLELAGAQVEVKKAE 134 (314)
Q Consensus 103 V~F~~~~~a~~a~~~l~~~~~~gr~l~V~~a~ 134 (314)
||.-..+++.+|+++|.+-++..|. .|..++
T Consensus 326 IE~v~~~~v~~a~erm~kgdV~yRf-VvD~s~ 356 (360)
T KOG0023|consen 326 IELVKLSEVNEAYERMEKGDVRYRF-VVDVSK 356 (360)
T ss_pred eEEEehhHHHHHHHHHHhcCeeEEE-EEEccc
Confidence 3333456688889988888888776 454443
No 222
>PF07876 Dabb: Stress responsive A/B Barrel Domain; InterPro: IPR013097 The stress-response A/B barrel domain is found in a class of stress-response proteins in plants. It is also found in some bacterial fructose-bisphosphate aldolase such as at the C terminus of a fructose 1,6-bisphosphate aldolase from Hydrogenophilus thermoluteolus (Q9ZA13 from SWISSPROT) []. Q93NG5 from SWISSPROT is found in the pA01 plasmid, which encodes genes for molybdopterin uptake and degradation of plant alkaloid nicotine. The stress-response A/B barrel domain forms a very stable dimer. This dimer belongs to the superfamily of dimeric alpha+beta barrels in which the two beta-sheets form a beta-barrel. The two molecules in the dimer are related by a 2-fold axis parallel to helix H1 and beta-strands B3 and B4. C-terminal residues extending from the beta4 strand of each monomer wrap around and connect with the beta2 strand and alpha1 helix of the opposing monomer to form the dimer interface [, , ].The outer surface of the beta-sheets of the two molecules forms a beta-barrel-like structure defining a central pore. The function of the stress-response A/B barrel domain is unknown [, , ], but it is upregulated in response to salt stress in Populus balsamifera (balsam poplar) []. Some proteins known to contain a stress response A/B barrel domain are listed below: - Arabidopsis thaliana At3g17210 - Arabidopsis thaliana At5g22580 -Populus tremula stable protein 1 (SP-1)(Populus species), a thermostable stress-responsive protein. - Pseudomonas hydrogenothermophila fructose 1,6-bisphosphate aldolase (cbbA). The structure of one of these proteins has been solved (Q9LUV2 from SWISSPROT) and the domain forms an alpha-beta barrel dimer [].; PDB: 3BB5_E 3FMB_A 3BDE_B 2QYC_A 1Q53_B 2Q3P_A 1Q4R_A 3BN7_A 3BGU_B 1RJJ_B ....
Probab=55.12 E-value=61 Score=23.51 Aligned_cols=57 Identities=18% Similarity=0.375 Sum_probs=35.2
Q ss_pred EEEcCCCCCCCHHHHHHHHh-------ccCCeEEEEEeecCCCCC-cceE---EEEEeCChHHHHHHH
Q 021295 59 IFVGGIPSSVNEDEFKDFFM-------QFGDVQEHQIMRDHSTSR-SRGF---GFITFDTEQAVDDLL 115 (314)
Q Consensus 59 l~V~nLp~~~~e~~l~~~F~-------~~G~v~~v~i~~~~~~g~-~rG~---afV~F~~~~~a~~a~ 115 (314)
|.+-.|...++++++.++++ +...|+.+.+-++..... .++| .+++|+|.++.++-+
T Consensus 4 ivlfklk~~~~~~~~~~~~~~l~~l~~~ip~i~~~~~G~~~~~~~~~~~~~~~~~~~F~s~~~l~~Y~ 71 (97)
T PF07876_consen 4 IVLFKLKPDATEEEIEEVLEALRALKDKIPGIVSFEVGRNFSPEDLAKGYDHALVSTFESEEDLDAYQ 71 (97)
T ss_dssp EEEEEESTTTCHHHHHHHHHHHHHHHHHSTTECEEEEEEESSTSSTSTT-SEEEEEEESSHHHHHHHH
T ss_pred EEEEEECCCCCHHHHHHHHHHHHhcccCCCceEEEEEEcccCcccccCCCcEEEEEEECCHHHHHHHH
Confidence 44456777888887755443 445677887776643332 2333 457899988876644
No 223
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=54.83 E-value=8.7 Score=25.26 Aligned_cols=20 Identities=10% Similarity=0.376 Sum_probs=16.9
Q ss_pred CcccEEEEEECCHHHHHHHH
Q 021295 8 QPRGFGFVTYADPSVVDKVI 27 (314)
Q Consensus 8 ~~kG~aFV~f~~~~~a~~A~ 27 (314)
..+=..+|+|++..+|++||
T Consensus 34 ~~~~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 34 ESTNWMYLKYKSRKDAEKAL 53 (53)
T ss_pred CCCcEEEEEECCHHHHHhhC
Confidence 34567999999999999985
No 224
>PF15063 TC1: Thyroid cancer protein 1
Probab=54.73 E-value=4.3 Score=28.77 Aligned_cols=53 Identities=19% Similarity=0.231 Sum_probs=36.5
Q ss_pred CCcceEEEcCCCCCCCHHHHHHHHhccCCeE---EEEEeecCCCCCcceEEEEEeCChHHHHHHHHhc
Q 021295 54 FKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQ---EHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKG 118 (314)
Q Consensus 54 ~~~~~l~V~nLp~~~~e~~l~~~F~~~G~v~---~v~i~~~~~~g~~rG~afV~F~~~~~a~~a~~~l 118 (314)
...++--+.||-.+++.+.|..+|.+-|..+ +++|+.. .-.++++..+||..|
T Consensus 23 t~~RKkasaNIFe~vn~~qlqrLF~~sGD~kAEeRA~iI~~------------~~~d~ee~a~AL~~L 78 (79)
T PF15063_consen 23 TASRKKASANIFENVNLDQLQRLFQKSGDKKAEERARIIWE------------CAQDPEEKARALMAL 78 (79)
T ss_pred hHHhhhhhhhhhhccCHHHHHHHHHHccchhHHHHHHHHHh------------hCCCHHHHHHHHHhc
Confidence 4455666888999999999999999998754 3444322 223566666777654
No 225
>PF02426 MIase: Muconolactone delta-isomerase; InterPro: IPR003464 This small enzyme forms a homodecameric complex, that catalyses the third step in the catabolism of catechol to succinate- and acetyl-coa in the beta-ketoadipate pathway (5.3.3.4 from EC). The protein has a ferredoxin-like fold according to SCOP.; GO: 0006725 cellular aromatic compound metabolic process
Probab=54.61 E-value=86 Score=23.24 Aligned_cols=56 Identities=11% Similarity=0.228 Sum_probs=40.7
Q ss_pred CCCCCCCHHHHHHH----------HhccCCeEEEEEeecCCCCCcceEEEEEeCChHHHHHHHHhcCCee
Q 021295 63 GIPSSVNEDEFKDF----------FMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLE 122 (314)
Q Consensus 63 nLp~~~~e~~l~~~----------F~~~G~v~~v~i~~~~~~g~~rG~afV~F~~~~~a~~a~~~l~~~~ 122 (314)
+||.+++.+++.++ +.+-|++..+.-+. ++...++++.-+|++++.+.|..|--..
T Consensus 10 ~~P~~~~~~~~~~~~a~E~~~a~eLq~~G~~~~lWr~~----G~~~n~~Ifdv~d~~eLh~lL~sLPL~p 75 (91)
T PF02426_consen 10 NVPPDMPPEEVDRLKAREKARAQELQRQGKWRHLWRVV----GRYANVSIFDVEDNDELHELLSSLPLFP 75 (91)
T ss_pred eCCCCCCHHHHHHHHHHHHHHHHHHHHCCeeeEEEEec----CCcceEEEEECCCHHHHHHHHHhCCCcc
Confidence 57778777665433 34558888887754 4456689999999999999998865443
No 226
>COG5193 LHP1 La protein, small RNA-binding pol III transcript stabilizing protein and related La-motif-containing proteins involved in translation [Posttranslational modification, protein turnover, chaperones / Translation, ribosomal structure and biogenesis]
Probab=54.35 E-value=5.3 Score=37.53 Aligned_cols=62 Identities=13% Similarity=0.185 Sum_probs=50.9
Q ss_pred CcceEEEcCCCCCCCHH--------HHHHHHhc--cCCeEEEEEeecCCCCCcceEEEEEeCChHHHHHHHH
Q 021295 55 KTKKIFVGGIPSSVNED--------EFKDFFMQ--FGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLA 116 (314)
Q Consensus 55 ~~~~l~V~nLp~~~~e~--------~l~~~F~~--~G~v~~v~i~~~~~~g~~rG~afV~F~~~~~a~~a~~ 116 (314)
.-+.+|+..+..+.+.+ +|..+|.. ..++..|.+.++.....+++..|++|...+.+++.+.
T Consensus 173 ~qr~~y~n~fG~e~~~~a~~~e~~~d~~~~~p~h~h~~~~~i~~rrd~~nkn~~gSv~~efk~~~~~q~~nn 244 (438)
T COG5193 173 MQRDVYQNGFGKEDVNNASRPEQQEDLEIQFPPHYHAPPSQIRNRRDWLNKNFRGSVFVEFKYFREAQRFNN 244 (438)
T ss_pred HhhhHHhhcCCcccccccccchhhhhHHhhCCCcccCChhhccchhhhhhccccCcccccccChHHHHHHhc
Confidence 34577888887766554 89999988 6778888888887778889999999999999999984
No 227
>KOG1295 consensus Nonsense-mediated decay protein Upf3 [RNA processing and modification]
Probab=54.20 E-value=20 Score=33.52 Aligned_cols=69 Identities=13% Similarity=0.274 Sum_probs=46.8
Q ss_pred CcceEEEcCCCCCCCHHHHHHHHhccCC-eEEEEEeecCC--CCCcceEEEEEeCChHHHHHHHHhcCCeee
Q 021295 55 KTKKIFVGGIPSSVNEDEFKDFFMQFGD-VQEHQIMRDHS--TSRSRGFGFITFDTEQAVDDLLAKGNKLEL 123 (314)
Q Consensus 55 ~~~~l~V~nLp~~~~e~~l~~~F~~~G~-v~~v~i~~~~~--~g~~rG~afV~F~~~~~a~~a~~~l~~~~~ 123 (314)
...+|.|..||..+++++|.+.+..+-. |..+.+..... .......|+|.|..++++..-....+.+++
T Consensus 6 ~~~Kvv~rrlpp~l~~~~~~eqi~p~~~~v~~~~F~~a~~s~~~~~ysrayinFk~~~dv~ef~~~f~g~if 77 (376)
T KOG1295|consen 6 AKVKVVVRRLPPKLTEEQLLEQINPFPEHVNWEFFAKADESLRNHKYSRAYINFKNPEDVEEFRRRFDGYIF 77 (376)
T ss_pred cceeeeeecCCCcccHHHHhhhcCCCccccchheeccccccchhhhhhhhhhccccHHHHHHHHhhCCceEE
Confidence 3467889999999999999988877532 22222221111 111245789999999998888887777664
No 228
>cd04908 ACT_Bt0572_1 N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains. Included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains as seen in the uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related ACT domains. These tandem ACT domain proteins belong to the superfamily of ACT regulatory domains.
Probab=53.47 E-value=66 Score=21.60 Aligned_cols=45 Identities=9% Similarity=0.167 Sum_probs=30.0
Q ss_pred CHHHHHHHHhccC-CeEEEEEeecCCCCCcceEEEEEeCChHHHHHHHHh
Q 021295 69 NEDEFKDFFMQFG-DVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAK 117 (314)
Q Consensus 69 ~e~~l~~~F~~~G-~v~~v~i~~~~~~g~~rG~afV~F~~~~~a~~a~~~ 117 (314)
.-.+|-++|.+.+ .|+.+.+....+ +.+..|.+++.+.+.++|+.
T Consensus 14 ~La~v~~~l~~~~inI~~i~~~~~~~----~~~~rl~~~~~~~~~~~L~~ 59 (66)
T cd04908 14 RLAAVTEILSEAGINIRALSIADTSE----FGILRLIVSDPDKAKEALKE 59 (66)
T ss_pred hHHHHHHHHHHCCCCEEEEEEEecCC----CCEEEEEECCHHHHHHHHHH
Confidence 4467888887775 577776654322 35666667777777777776
No 229
>CHL00123 rps6 ribosomal protein S6; Validated
Probab=53.47 E-value=58 Score=24.32 Aligned_cols=58 Identities=12% Similarity=0.260 Sum_probs=32.2
Q ss_pred eEEEcCCCCCCCHHHHHHHHhcc--------CCeEEEEEeec-----CCCCCcce-EEEEEeCChHHHHHHHHh
Q 021295 58 KIFVGGIPSSVNEDEFKDFFMQF--------GDVQEHQIMRD-----HSTSRSRG-FGFITFDTEQAVDDLLAK 117 (314)
Q Consensus 58 ~l~V~nLp~~~~e~~l~~~F~~~--------G~v~~v~i~~~-----~~~g~~rG-~afV~F~~~~~a~~a~~~ 117 (314)
++|| |.++++++++.++.+++ ++|.++...-. +-....+| |.++.|+-+.++-+.++.
T Consensus 10 ~~~I--l~p~l~e~~~~~~~~~~~~~i~~~gg~i~~~~~wG~r~LAY~I~k~~~G~Yv~~~f~~~~~~i~eler 81 (97)
T CHL00123 10 TMYL--LKPDLNEEELLKWIENYKKLLRKRGAKNISVQNRGKRKLSYKINKYEDGIYIQMNYSGNGKLVNSLEK 81 (97)
T ss_pred EEEE--ECCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEeecCeeeeEEcCCCCEEEEEEEEEEECHHHHHHHHH
Confidence 4444 45566777766555443 45655542211 11233456 578889877666666664
No 230
>PTZ00191 60S ribosomal protein L23a; Provisional
Probab=52.24 E-value=43 Score=27.10 Aligned_cols=56 Identities=11% Similarity=0.088 Sum_probs=36.1
Q ss_pred eEEEcCCCCCCCHHHHHHHHhccC--CeEEEEEeecCCCCCcceEEEEEeCChHHHHHHHH
Q 021295 58 KIFVGGIPSSVNEDEFKDFFMQFG--DVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLA 116 (314)
Q Consensus 58 ~l~V~nLp~~~~e~~l~~~F~~~G--~v~~v~i~~~~~~g~~rG~afV~F~~~~~a~~a~~ 116 (314)
..||--++..++..+|++.+++.= +|+.|..+..+. ..--|||.+....+|.....
T Consensus 83 N~yvF~Vd~kAnK~qIK~AVEklf~VkV~kVNTli~p~---g~KKA~V~L~~~~~aidva~ 140 (145)
T PTZ00191 83 NTLVFIVDQRANKTQIKKAVEKLYDVKVVKVNTLITPD---GLKKAYIRLSPDVDALDVAN 140 (145)
T ss_pred CEEEEEEcCCCCHHHHHHHHHHHhCCeeEEEEeEEcCC---CceEEEEEECCCCcHHHHHH
Confidence 345556788899999999998743 455565554332 11259999977766544433
No 231
>PF03439 Spt5-NGN: Early transcription elongation factor of RNA pol II, NGN section; InterPro: IPR005100 Spt5p and prokaryotic NusG are shown to contain a novel 'NGN' domain. The combined NGN and KOW motif regions of Spt5 form the binding domain with Spt4 []. Spt5 complexes with Spt4 as a 1:1 heterodimer snf this Spt5-Spt4 complex regulates early transcription elongation by RNA polymerase II and has an imputed role in pre-mRNA processing via its physical association with mRNA capping enzymes. The Schizosaccharomyces pombe core Spt5-Spt4 complex is a heterodimer bearing a trypsin-resistant Spt4-binding domain within the Spt5 subunit []. ; PDB: 3H7H_B 3QQC_D 3P8B_B 2EXU_A.
Probab=52.08 E-value=36 Score=24.60 Aligned_cols=27 Identities=11% Similarity=0.265 Sum_probs=22.7
Q ss_pred cceEEEEEeCChHHHHHHHHhcCCeee
Q 021295 97 SRGFGFITFDTEQAVDDLLAKGNKLEL 123 (314)
Q Consensus 97 ~rG~afV~F~~~~~a~~a~~~l~~~~~ 123 (314)
.+||-|||-.+++++.+|++.+..+..
T Consensus 43 lkGyIyVEA~~~~~V~~ai~gi~~i~~ 69 (84)
T PF03439_consen 43 LKGYIYVEAERESDVKEAIRGIRHIRG 69 (84)
T ss_dssp STSEEEEEESSHHHHHHHHTT-TTEEE
T ss_pred CceEEEEEeCCHHHHHHHHhcccceee
Confidence 689999999999999999998766543
No 232
>PF10915 DUF2709: Protein of unknown function (DUF2709); InterPro: IPR024484 Members of this family appear restricted to Chlamydiales. Their function is unknown.
Probab=51.23 E-value=1.5e+02 Score=25.19 Aligned_cols=63 Identities=16% Similarity=0.325 Sum_probs=39.8
Q ss_pred EEECCHHHHHHHHHccCccC-CcEEEEeecCCCCCCCCCCCCcceEEEcCCCCCC--------CHHHHHHHHhccCC
Q 021295 15 VTYADPSVVDKVIEDTHIIN-GKQVEIKRTIPKGAVGSKDFKTKKIFVGGIPSSV--------NEDEFKDFFMQFGD 82 (314)
Q Consensus 15 V~f~~~~~a~~A~~~~~~i~-g~~i~v~~~~~~~~~~~~~~~~~~l~V~nLp~~~--------~e~~l~~~F~~~G~ 82 (314)
+.|.+.++|.+.+++...++ ...|.+....+. -...+++|||..+.-.+ .++.|.++.++|-+
T Consensus 47 ~I~qs~e~ai~~lE~e~KlWreteI~I~~g~p~-----VNE~TkkIYICPFTGKVF~DNt~~nPQDAIYDWvSkCPe 118 (238)
T PF10915_consen 47 IIFQSAEDAIRILEEEGKLWRETEIKIQSGKPS-----VNEQTKKIYICPFTGKVFGDNTHPNPQDAIYDWVSKCPE 118 (238)
T ss_pred hhccCHHHHHHHHHHhcchheeeeEEEecCCcc-----cccccceEEEcCCcCccccCCCCCChHHHHHHHHhhCCc
Confidence 46788889888888554444 444555443332 33456778876544222 45789999999864
No 233
>COG0445 GidA Flavin-dependent tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Cell cycle control, cell division, chromosome partitioning]
Probab=51.21 E-value=41 Score=33.48 Aligned_cols=40 Identities=18% Similarity=0.428 Sum_probs=32.1
Q ss_pred CCCCcceEEEcCCCCCCCHHHHHHHHhccCCeEEEEEeec
Q 021295 52 KDFKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRD 91 (314)
Q Consensus 52 ~~~~~~~l~V~nLp~~~~e~~l~~~F~~~G~v~~v~i~~~ 91 (314)
+-.++..||+.+|+.++.++.-.++....--++.++|++.
T Consensus 297 EGl~~~evY~nGlSTSlP~dVQ~~~irsipGlEna~i~rp 336 (621)
T COG0445 297 EGLDTDEVYPNGLSTSLPEDVQEQIIRSIPGLENAEILRP 336 (621)
T ss_pred CCCCCceEecCcccccCCHHHHHHHHHhCcccccceeecc
Confidence 3456789999999999998888888887766777877753
No 234
>PF09869 DUF2096: Uncharacterized protein conserved in archaea (DUF2096); InterPro: IPR017098 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=50.99 E-value=64 Score=26.70 Aligned_cols=47 Identities=9% Similarity=0.154 Sum_probs=38.1
Q ss_pred CCCCCCCHHHHHHHHhccCCeEEEEEeecCCCCCcceEEEEEeCChHHHHHHHHhcC
Q 021295 63 GIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGN 119 (314)
Q Consensus 63 nLp~~~~e~~l~~~F~~~G~v~~v~i~~~~~~g~~rG~afV~F~~~~~a~~a~~~l~ 119 (314)
+|+..+.++-|.++.+-+|-|.+. .+ . .-.+.|-+.+.+++||+.+.
T Consensus 118 ~l~~~i~~erl~ei~E~~gvI~Ef---ee--~-----~~V~I~Gdke~Ik~aLKe~s 164 (169)
T PF09869_consen 118 KLKKPIQEERLQEISEWHGVIFEF---EE--D-----DKVVIEGDKERIKKALKEFS 164 (169)
T ss_pred ecCccchHHHHHHHHHHhceeEEe---cC--C-----cEEEEeccHHHHHHHHHHHH
Confidence 689999999999999999987665 22 1 24788899999999999764
No 235
>cd06405 PB1_Mekk2_3 The PB1 domain is present in the two mitogen-activated protein kinase kinases MEKK2 and MEKK3 which are two members of the signaling kinase cascade involved in angiogenesis and early cardiovascular development. The PB1 domain of MEKK2 (and/or MEKK3) interacts with the PB1 domain of another member of the kinase cascade Map2k5. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, f
Probab=50.91 E-value=88 Score=22.27 Aligned_cols=50 Identities=12% Similarity=0.246 Sum_probs=37.2
Q ss_pred CCCCCCCHHHHHHHH-hccCCeEEEEEeecCCCCCcceEEEEEeCChHHHHHHHHhcCC
Q 021295 63 GIPSSVNEDEFKDFF-MQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNK 120 (314)
Q Consensus 63 nLp~~~~e~~l~~~F-~~~G~v~~v~i~~~~~~g~~rG~afV~F~~~~~a~~a~~~l~~ 120 (314)
-+|.-+.-+||.... ..||...++....+ --.|-..+.++.++|++.++.
T Consensus 15 ~f~RPvkf~dl~~kv~~afGq~mdl~ytn~--------eL~iPl~~Q~DLDkAie~ld~ 65 (79)
T cd06405 15 QFPRPVKFKDLQQKVTTAFGQPMDLHYTNN--------ELLIPLKNQEDLDRAIELLDR 65 (79)
T ss_pred ecCCCccHHHHHHHHHHHhCCeeeEEEecc--------cEEEeccCHHHHHHHHHHHcc
Confidence 456666667776554 67888877776654 257888999999999998765
No 236
>PF08734 GYD: GYD domain; InterPro: IPR014845 These proteins of unknown function are usually less than 100 amino acids in length. They may belong to the dimeric alpha/beta barrel superfamily.
Probab=50.16 E-value=61 Score=23.84 Aligned_cols=45 Identities=2% Similarity=-0.011 Sum_probs=32.8
Q ss_pred HHHHHHHHhccC-CeEEEEEeecCCCCCcceEEEEEeCChHHHHHHHHhc
Q 021295 70 EDEFKDFFMQFG-DVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKG 118 (314)
Q Consensus 70 e~~l~~~F~~~G-~v~~v~i~~~~~~g~~rG~afV~F~~~~~a~~a~~~l 118 (314)
++.++++++++| +|+++.+..- .-.-..++++.|.++|.++.-.+
T Consensus 22 ~~a~~~~~e~~Gg~l~~~y~t~G----~yD~v~i~eaPD~~~a~~~~l~i 67 (91)
T PF08734_consen 22 AEAVRALIEALGGKLKSFYWTLG----EYDFVVIVEAPDDETAAAASLAI 67 (91)
T ss_pred HHHHHHHHHHcCCEEEEEEEecC----CCCEEEEEEcCCHHHHHHHHHHH
Confidence 467788888875 7887777644 34557889999999888776543
No 237
>PRK10905 cell division protein DamX; Validated
Probab=49.76 E-value=31 Score=31.70 Aligned_cols=59 Identities=7% Similarity=0.162 Sum_probs=38.5
Q ss_pred EEcCCCCCCCHHHHHHHHhccCCeEEEEEeecCCCCCcceEEEE--EeCChHHHHHHHHhcCC
Q 021295 60 FVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFI--TFDTEQAVDDLLAKGNK 120 (314)
Q Consensus 60 ~V~nLp~~~~e~~l~~~F~~~G~v~~v~i~~~~~~g~~rG~afV--~F~~~~~a~~a~~~l~~ 120 (314)
|+--|-...+++.|++|..+.+ +....+.....+++. -|.+| .|.+.++|++||++|-.
T Consensus 248 YTLQL~A~Ss~~~l~~fakKlg-L~~y~vy~TtRnGkp-WYVV~yG~YaSraeAk~AiakLPa 308 (328)
T PRK10905 248 YTLQLSSSSNYDNLNGWAKKEN-LKNYVVYETTRNGQP-WYVLVSGVYASKEEAKRAVSTLPA 308 (328)
T ss_pred eEEEEEecCCHHHHHHHHHHcC-CCceEEEEeccCCce-EEEEEecCCCCHHHHHHHHHHCCH
Confidence 3333444457788999988884 555555554444432 24333 78999999999998743
No 238
>COG2608 CopZ Copper chaperone [Inorganic ion transport and metabolism]
Probab=49.43 E-value=68 Score=22.28 Aligned_cols=46 Identities=15% Similarity=0.249 Sum_probs=34.8
Q ss_pred ceEEEcCCCCCCCHHHHHHHHhccCCeEEEEEeecCCCCCcceEEEEEeCCh
Q 021295 57 KKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTE 108 (314)
Q Consensus 57 ~~l~V~nLp~~~~e~~l~~~F~~~G~v~~v~i~~~~~~g~~rG~afV~F~~~ 108 (314)
.+|.|.++.=.--...+++.+++..-|..+.+-.+. +.++|+|++.
T Consensus 4 ~~l~v~~MtC~~C~~~V~~al~~v~gv~~v~v~l~~------~~~~V~~d~~ 49 (71)
T COG2608 4 TTLKVEGMTCGHCVKTVEKALEEVDGVASVDVDLEK------GTATVTFDSN 49 (71)
T ss_pred EEEEECCcCcHHHHHHHHHHHhcCCCeeEEEEEccc------CeEEEEEcCC
Confidence 456677766666678889999988778888887663 3599999883
No 239
>COG0837 Glk Glucokinase [Carbohydrate transport and metabolism]
Probab=49.09 E-value=36 Score=31.11 Aligned_cols=70 Identities=3% Similarity=0.025 Sum_probs=42.0
Q ss_pred ccEEEEEECCHHHHHHHH-HccCccCCcEEEEeecCCCCCCCCCCCCcceEEEcCCCCCCCHHHHHHHHhccCCeEEEEE
Q 021295 10 RGFGFVTYADPSVVDKVI-EDTHIINGKQVEIKRTIPKGAVGSKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQI 88 (314)
Q Consensus 10 kG~aFV~f~~~~~a~~A~-~~~~~i~g~~i~v~~~~~~~~~~~~~~~~~~l~V~nLp~~~~e~~l~~~F~~~G~v~~v~i 88 (314)
+=|+..+|.+.++|.+.. .+.....-+...+-.+- ......|-+.|++|.++.+.+++.+. +++|.|
T Consensus 34 ~~~~~~dypsle~av~~yl~~~~~~~~~~a~~AiAg--------Pv~gd~v~lTN~~W~~s~~~~r~~Lg----l~~v~l 101 (320)
T COG0837 34 ETYACADYPSLEEAVQDYLSEHTAVAPRSACFAIAG--------PIDGDEVRLTNHDWVFSIARMRAELG----LDHLSL 101 (320)
T ss_pred ceecccCcCCHHHHHHHHHHHhhccCccceEEEEec--------CccCCEEeeecCcccccHHHHHHhcC----CCcEEE
Confidence 345556777766655533 33211121111112122 23345889999999999999988765 677888
Q ss_pred eec
Q 021295 89 MRD 91 (314)
Q Consensus 89 ~~~ 91 (314)
+.|
T Consensus 102 iND 104 (320)
T COG0837 102 IND 104 (320)
T ss_pred ech
Confidence 877
No 240
>KOG0256 consensus 1-aminocyclopropane-1-carboxylate synthase, and related proteins [Signal transduction mechanisms]
Probab=48.77 E-value=59 Score=31.09 Aligned_cols=70 Identities=14% Similarity=0.235 Sum_probs=41.5
Q ss_pred CCCCCCHHHHHHHHhccCCeEEEEEeecCCCCCcceEEEEEeCChHHHHHHHHhcCCeeeCCeEEEEeecCCCCCCCC
Q 021295 64 IPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVKKAEPKKPNLP 141 (314)
Q Consensus 64 Lp~~~~e~~l~~~F~~~G~v~~v~i~~~~~~g~~rG~afV~F~~~~~a~~a~~~l~~~~~~gr~l~V~~a~~~~~~~~ 141 (314)
|-..++.++|.+++.-. .-+.|+|+.|.- ||--+|... .....++..+...++-..|.|-++..|..-+|
T Consensus 239 LG~~~~~e~L~~ll~Fa-~~kniHvI~DEI------ya~sVF~~~-~F~Sv~ev~~~~~~~~~rvHivyslSKD~Glp 308 (471)
T KOG0256|consen 239 LGTTLSPEELISLLNFA-SRKNIHVISDEI------YAGSVFDKS-EFRSVLEVRKDPHLDPDRVHIVYSLSKDFGLP 308 (471)
T ss_pred CCCccCHHHHHHHHHHH-hhcceEEEeehh------hcccccCcc-CceEHHHHhhccccCCCcEEEEEEeccccCCC
Confidence 44456788888776532 236778887732 555555555 33333333344444666788888887765543
No 241
>PRK06737 acetolactate synthase 1 regulatory subunit; Validated
Probab=48.41 E-value=88 Score=22.30 Aligned_cols=62 Identities=16% Similarity=0.206 Sum_probs=41.0
Q ss_pred eEEEcCCCCCCCHHHHHHHHhccC-CeEEEEEeecCCCCCcceEEEEEeCChHHHHHHHHhcCCee
Q 021295 58 KIFVGGIPSSVNEDEFKDFFMQFG-DVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLE 122 (314)
Q Consensus 58 ~l~V~nLp~~~~e~~l~~~F~~~G-~v~~v~i~~~~~~g~~rG~afV~F~~~~~a~~a~~~l~~~~ 122 (314)
+|+|.|-|--+ +.+..+|+.-+ .|+.+.+-.....+.++ +-++...+++.+++.+++|+++.
T Consensus 6 si~v~n~pGVL--~Ri~~lf~rRgfNI~Sl~vg~te~~~~sr-iti~~~~~~~~i~qi~kQL~KLi 68 (76)
T PRK06737 6 SLVIHNDPSVL--LRISGIFARRGYYISSLNLNERDTSGVSE-MKLTAVCTENEATLLVSQLKKLI 68 (76)
T ss_pred EEEEecCCCHH--HHHHHHHhccCcceEEEEecccCCCCeeE-EEEEEECCHHHHHHHHHHHhCCc
Confidence 45555554322 45678888776 58888776554334344 45665689999999999987753
No 242
>KOG0156 consensus Cytochrome P450 CYP2 subfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=47.23 E-value=31 Score=33.87 Aligned_cols=59 Identities=17% Similarity=0.287 Sum_probs=45.5
Q ss_pred EEcCCCCCCCH---HHHHHHHhccCCeEEEEEeecCCCCCcceEEEEEeCChHHHHHHHHhcCCeeeCCeEE
Q 021295 60 FVGGIPSSVNE---DEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQV 128 (314)
Q Consensus 60 ~V~nLp~~~~e---~~l~~~F~~~G~v~~v~i~~~~~~g~~rG~afV~F~~~~~a~~a~~~l~~~~~~gr~l 128 (314)
+|+||+.-... ..|.++-++||+|-.++|-.. -.|...+.+.|++|+.+ |...+.+|+.
T Consensus 36 iIGnl~~l~~~~~h~~~~~ls~~yGpi~tl~lG~~---------~~Vviss~~~akE~l~~-~d~~fa~Rp~ 97 (489)
T KOG0156|consen 36 IIGNLHQLGSLPPHRSFRKLSKKYGPVFTLRLGSV---------PVVVISSYEAAKEVLVK-QDLEFADRPD 97 (489)
T ss_pred ccccHHHcCCCchhHHHHHHHHHhCCeEEEEecCc---------eEEEECCHHHHHHHHHh-CCccccCCCC
Confidence 57887765443 556666679999998887543 47888899999999998 7888888875
No 243
>PF04026 SpoVG: SpoVG; InterPro: IPR007170 This is a stage V sporulation protein G. It is essential for sporulation and specific to stage V sporulation in Bacillus megaterium and Bacillus subtilis []. In B. subtilis, expression decreases after 30-60 minutes of cold shock [].; GO: 0030435 sporulation resulting in formation of a cellular spore; PDB: 2IA9_F 2I9X_B 2I9Z_A.
Probab=46.54 E-value=37 Score=24.77 Aligned_cols=26 Identities=19% Similarity=0.436 Sum_probs=21.9
Q ss_pred CeEEEEEeecCCCCCcceEEEEEeCC
Q 021295 82 DVQEHQIMRDHSTSRSRGFGFITFDT 107 (314)
Q Consensus 82 ~v~~v~i~~~~~~g~~rG~afV~F~~ 107 (314)
+|.+|+|.+-...++.+++|-|+|++
T Consensus 2 ~itdVri~~~~~~~~lka~asV~~dd 27 (84)
T PF04026_consen 2 KITDVRIRKIEPEGKLKAFASVTFDD 27 (84)
T ss_dssp -EEEEEEEETTSSSSEEEEEEEEETT
T ss_pred ccEEEEEEEecCCCCEEEEEEEEECC
Confidence 57888888877778999999999977
No 244
>PRK00911 dihydroxy-acid dehydratase; Provisional
Probab=45.76 E-value=62 Score=32.23 Aligned_cols=107 Identities=18% Similarity=0.172 Sum_probs=59.3
Q ss_pred cccEEEEEECCHHHHHHHHHccCccCCcEEEEeecCCCCCCCCCCCCcceEEEcCCCCCCCHHHHHHHHhccCCeEEEEE
Q 021295 9 PRGFGFVTYADPSVVDKVIEDTHIINGKQVEIKRTIPKGAVGSKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQI 88 (314)
Q Consensus 9 ~kG~aFV~f~~~~~a~~A~~~~~~i~g~~i~v~~~~~~~~~~~~~~~~~~l~V~nLp~~~~e~~l~~~F~~~G~v~~v~i 88 (314)
.+|=| +.|+++++|.+|+.+...-.+..|-++..-|+.-.- .|+- -.+...+...|--++|-+
T Consensus 397 ~~GpA-~VF~see~a~~ai~~g~I~~gdVvViRyeGPkGgPG-------------MpEm---l~~t~al~g~Gl~~~val 459 (552)
T PRK00911 397 FTGPA-RVFDSEEEAMEAILAGKIKAGDVVVIRYEGPKGGPG-------------MREM---LAPTSAIVGAGLGDDVAL 459 (552)
T ss_pred eeeeE-EEECCHHHHHHHHhcCCCCCCeEEEEeCCCCCCCCC-------------hHHH---hhHHHHHHhCCCCCceEE
Confidence 34444 459999999999997655555555555554543211 1100 012233334443367777
Q ss_pred eec-CCCCCcceEEEEEeCChHHHHHHHHhc---CC--eeeCCeEEEEee
Q 021295 89 MRD-HSTSRSRGFGFITFDTEQAVDDLLAKG---NK--LELAGAQVEVKK 132 (314)
Q Consensus 89 ~~~-~~~g~~rG~afV~F~~~~~a~~a~~~l---~~--~~~~gr~l~V~~ 132 (314)
+.| |.++.++|++.....-+..+-=.|..+ +- +++..+.|.|..
T Consensus 460 ITDGRfSG~s~G~~igHvsPEAa~GGpIalv~dGD~I~IDi~~r~l~l~v 509 (552)
T PRK00911 460 ITDGRFSGGTRGLCVGHVSPEAAVGGPIALVEDGDIITIDAPNRTLDVLV 509 (552)
T ss_pred ecccccCccccCCEEEEEChhhcCCCcEEEEeCCCEEEEecCCCEEEEec
Confidence 776 778889997777664443332233322 22 334567777753
No 245
>PF11215 DUF3010: Protein of unknown function (DUF3010); InterPro: IPR021378 This family of proteins with unknown function appears to be restricted to Gammaproteobacteria.
Probab=45.42 E-value=1.2e+02 Score=24.29 Aligned_cols=45 Identities=18% Similarity=0.292 Sum_probs=26.3
Q ss_pred CCCcceEEEcCCCCCCCHHHHHHHHhcc------CCeEEEEEeecCCCCCcceE
Q 021295 53 DFKTKKIFVGGIPSSVNEDEFKDFFMQF------GDVQEHQIMRDHSTSRSRGF 100 (314)
Q Consensus 53 ~~~~~~l~V~nLp~~~~e~~l~~~F~~~------G~v~~v~i~~~~~~g~~rG~ 100 (314)
+...++|- |+.+.+.++|++|...| -.|+.|.|.....+++.-|-
T Consensus 29 dcr~~k~~---l~~~~~~~~vr~Fq~~f~kl~~dy~Vd~VvIk~R~~KGKfAGg 79 (138)
T PF11215_consen 29 DCRVRKFS---LSDDNSTEEVRKFQFTFAKLMEDYKVDKVVIKERATKGKFAGG 79 (138)
T ss_pred ccceeEEE---cCCCccHHHHHHHHHHHHHHHHHcCCCEEEEEecccCCCccCC
Confidence 33444554 44555666666553332 26888888877667766553
No 246
>KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis]
Probab=45.29 E-value=20 Score=35.09 Aligned_cols=40 Identities=15% Similarity=0.267 Sum_probs=33.0
Q ss_pred ceEEEEEeCChHHHHHHHHhcCCeeeCCeEEEEeecCCCC
Q 021295 98 RGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVKKAEPKK 137 (314)
Q Consensus 98 rG~afV~F~~~~~a~~a~~~l~~~~~~gr~l~V~~a~~~~ 137 (314)
..+|+++|++++.+.+|+..+++.......+.+..+....
T Consensus 63 ~~~~~~~~et~~~~~ka~~~v~g~~~k~~~~~~~~~~~~~ 102 (534)
T KOG2187|consen 63 PKYAYVTFETPSDAGKAINLVDGLLYKGFILRVQLGATEV 102 (534)
T ss_pred CCceEEEEeccchhhhHHHHHhhhhhhcchhhhhhccccc
Confidence 4589999999999999999999988888777776655543
No 247
>PF14581 SseB_C: SseB protein C-terminal domain
Probab=44.91 E-value=33 Score=25.92 Aligned_cols=65 Identities=11% Similarity=0.192 Sum_probs=37.8
Q ss_pred HHHHHHHHhccCCeEEEEEeecCC-CCCcceEEEEEeCChHHHHHHHHh----cCCeeeCCeEEEEeecCC
Q 021295 70 EDEFKDFFMQFGDVQEHQIMRDHS-TSRSRGFGFITFDTEQAVDDLLAK----GNKLELAGAQVEVKKAEP 135 (314)
Q Consensus 70 e~~l~~~F~~~G~v~~v~i~~~~~-~g~~rG~afV~F~~~~~a~~a~~~----l~~~~~~gr~l~V~~a~~ 135 (314)
.+.|.++|++...|..+.++.-.. ...+.=+-.|+|+. ++.++++.. +..+.-.+..|.+.....
T Consensus 21 ~~aL~~~~~~~~~V~~Ayl~~~~~~~~~~~~li~vd~~~-~~~~~~~~~i~~~~~~~~~~~~~vd~~~~~~ 90 (108)
T PF14581_consen 21 LAALSEYFKQHKNVRAAYLALMQDEDEQPSLLIGVDFDG-EDIEEIFQEIGRAARPYLPDGWPVDFVLLDD 90 (108)
T ss_pred HHHHHHHHhhCccHHHhHHHHhhccCCCceEEEEEeccC-hhHHHHHHHHHHHhhhcCCCCceEEEEEccC
Confidence 377889999998888776654433 44445455677776 333333332 233333446666665554
No 248
>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]
Probab=44.85 E-value=16 Score=32.32 Aligned_cols=36 Identities=17% Similarity=0.316 Sum_probs=27.7
Q ss_pred CcccEEEEEECCHHHHHHHHHcc--CccCCcEEEEeec
Q 021295 8 QPRGFGFVTYADPSVVDKVIEDT--HIINGKQVEIKRT 43 (314)
Q Consensus 8 ~~kG~aFV~f~~~~~a~~A~~~~--~~i~g~~i~v~~~ 43 (314)
.-+|-++|.|..+++|++|++++ --+.+++|..+..
T Consensus 108 hl~GNVYV~f~~Ee~ae~a~~~lnnRw~~G~pi~ae~~ 145 (260)
T KOG2202|consen 108 HLVGNVYVKFRSEEDAEAALEDLNNRWYNGRPIHAELS 145 (260)
T ss_pred hhhhhhhhhcccHHHHHHHHHHHcCccccCCcceeeec
Confidence 34677899999999999999953 3667777766643
No 249
>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e.g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....
Probab=44.72 E-value=52 Score=29.27 Aligned_cols=63 Identities=10% Similarity=0.060 Sum_probs=35.3
Q ss_pred EEECCHHHHHHHHHccCccCCcEEEEeecCCCCCCCCC-CCCcceEEEcCCCCCCCHHHHHHHHh
Q 021295 15 VTYADPSVVDKVIEDTHIINGKQVEIKRTIPKGAVGSK-DFKTKKIFVGGIPSSVNEDEFKDFFM 78 (314)
Q Consensus 15 V~f~~~~~a~~A~~~~~~i~g~~i~v~~~~~~~~~~~~-~~~~~~l~V~nLp~~~~e~~l~~~F~ 78 (314)
+.++...+..+.+++... ....+++-........... ......++|+|||+.++.+-|.+++.
T Consensus 56 ~~vE~d~~~~~~L~~~~~-~~~~~~vi~~D~l~~~~~~~~~~~~~~vv~NlPy~is~~il~~ll~ 119 (262)
T PF00398_consen 56 IAVEIDPDLAKHLKERFA-SNPNVEVINGDFLKWDLYDLLKNQPLLVVGNLPYNISSPILRKLLE 119 (262)
T ss_dssp EEEESSHHHHHHHHHHCT-TCSSEEEEES-TTTSCGGGHCSSSEEEEEEEETGTGHHHHHHHHHH
T ss_pred eeecCcHhHHHHHHHHhh-hcccceeeecchhccccHHhhcCCceEEEEEecccchHHHHHHHhh
Confidence 344444445555553222 2334444443333222111 13456788999999999999999987
No 250
>PRK13259 regulatory protein SpoVG; Reviewed
Probab=44.64 E-value=38 Score=25.28 Aligned_cols=27 Identities=26% Similarity=0.444 Sum_probs=21.9
Q ss_pred CeEEEEEeecCCCCCcceEEEEEeCCh
Q 021295 82 DVQEHQIMRDHSTSRSRGFGFITFDTE 108 (314)
Q Consensus 82 ~v~~v~i~~~~~~g~~rG~afV~F~~~ 108 (314)
+|++|+|.+-...++.|++|-|+|++.
T Consensus 2 ~ITdVri~~~~~~g~lka~asit~dd~ 28 (94)
T PRK13259 2 EVTDVRLRKVNTEGRMKAIVSITFDNE 28 (94)
T ss_pred eEEEEEEEEeCCCCcEEEEEEEEECCE
Confidence 578888877666788999999999873
No 251
>PF10105 DUF2344: Uncharacterized protein conserved in bacteria (DUF2344); InterPro: IPR018768 This domain, found in various hypothetical bacterial proteins and Radical Sam domain proteins, has no known function.
Probab=44.50 E-value=87 Score=26.48 Aligned_cols=36 Identities=14% Similarity=0.258 Sum_probs=23.8
Q ss_pred CcceEEEcCCCCCCCHHHHHHHHhccCCeEEEEEeec
Q 021295 55 KTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRD 91 (314)
Q Consensus 55 ~~~~l~V~nLp~~~~e~~l~~~F~~~G~v~~v~i~~~ 91 (314)
-....|.-.|+ .++++++.+.++.|=.-+++.|.+.
T Consensus 108 i~~~~Y~i~~~-~~~~~~~~~~~~~~~~~~~~~v~k~ 143 (187)
T PF10105_consen 108 INAAEYRITLP-EIDEEELEEAIEAFLAAEEIIVEKR 143 (187)
T ss_pred cceEEEEEEec-CCCHHHHHHHHHHHHCCCCEEEEEe
Confidence 34455665666 7788888888777755566666654
No 252
>PF11411 DNA_ligase_IV: DNA ligase IV; InterPro: IPR021536 DNA ligase IV along with Xrcc4 functions in DNA non-homologous end joining. This process is required to mend double-strand breaks. Upon ligase binding to an Xrcc4 dimer, the helical tails unwind leading to a flat interaction surface []. ; GO: 0003910 DNA ligase (ATP) activity; PDB: 3II6_Y 2E2W_A 1IK9_C.
Probab=43.93 E-value=18 Score=21.81 Aligned_cols=16 Identities=25% Similarity=0.540 Sum_probs=10.4
Q ss_pred CCCCHHHHHHHHhccC
Q 021295 66 SSVNEDEFKDFFMQFG 81 (314)
Q Consensus 66 ~~~~e~~l~~~F~~~G 81 (314)
.++++++|++.|.+..
T Consensus 19 ~Dtd~~~Lk~vF~~i~ 34 (36)
T PF11411_consen 19 VDTDEDQLKEVFNRIK 34 (36)
T ss_dssp S---HHHHHHHHHCS-
T ss_pred ccCCHHHHHHHHHHhc
Confidence 4689999999998753
No 253
>COG0079 HisC Histidinol-phosphate/aromatic aminotransferase and cobyric acid decarboxylase [Amino acid transport and metabolism]
Probab=43.47 E-value=40 Score=31.60 Aligned_cols=43 Identities=19% Similarity=0.356 Sum_probs=32.0
Q ss_pred CcceEEEcCCCC----CCCHHHHHHHHhccCCeEEEEEeecCCCCCcceEEEEEeCC
Q 021295 55 KTKKIFVGGIPS----SVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDT 107 (314)
Q Consensus 55 ~~~~l~V~nLp~----~~~e~~l~~~F~~~G~v~~v~i~~~~~~g~~rG~afV~F~~ 107 (314)
+.+.|||.|-.- .++.+||+++.+.... .+.|+.| -||++|..
T Consensus 145 ~~~lv~i~nPNNPTG~~~~~~~l~~l~~~~~~--~~~vVvD--------EAY~eF~~ 191 (356)
T COG0079 145 KTKLVFLCNPNNPTGTLLPREELRALLEALPE--GGLVVID--------EAYIEFSP 191 (356)
T ss_pred CCCEEEEeCCCCCCCCCCCHHHHHHHHHhCCC--CcEEEEe--------CchhhcCC
Confidence 567888875432 3688999999998755 4555666 59999999
No 254
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=42.75 E-value=34 Score=23.69 Aligned_cols=16 Identities=6% Similarity=0.478 Sum_probs=14.7
Q ss_pred EEEECCHHHHHHHHHc
Q 021295 14 FVTYADPSVVDKVIED 29 (314)
Q Consensus 14 FV~f~~~~~a~~A~~~ 29 (314)
||.|.+.++|+++...
T Consensus 37 YIvF~~~~Ea~rC~~~ 52 (66)
T PF11767_consen 37 YIVFNDSKEAERCFRA 52 (66)
T ss_pred EEEECChHHHHHHHHh
Confidence 7999999999999984
No 255
>KOG3424 consensus 40S ribosomal protein S24 [Translation, ribosomal structure and biogenesis]
Probab=42.44 E-value=86 Score=24.40 Aligned_cols=46 Identities=15% Similarity=0.308 Sum_probs=27.2
Q ss_pred CCCHHHHHHHHhccCCe-----EEEEEeecCCCCCcceEEEEEeCChHHHHH
Q 021295 67 SVNEDEFKDFFMQFGDV-----QEHQIMRDHSTSRSRGFGFITFDTEQAVDD 113 (314)
Q Consensus 67 ~~~e~~l~~~F~~~G~v-----~~v~i~~~~~~g~~rG~afV~F~~~~~a~~ 113 (314)
.++.+||++-+++.=++ .-..+-...-.+++.+||.| |++.|.|.+
T Consensus 34 ~vsK~EirEKla~mYkt~~d~V~vfgfrt~~GggkstgfalI-Ydsve~akk 84 (132)
T KOG3424|consen 34 NVSKTEIREKLAKMYKTTPDAVFVFGFRTHFGGGKSTGFALI-YDSVEYAKK 84 (132)
T ss_pred CCCHHHHHHHHHHHhcCCcceEEEEEeeeccCCcccceeeee-eehHHHHHh
Confidence 46778888777654222 12223333446788889876 566665544
No 256
>PHA01632 hypothetical protein
Probab=42.05 E-value=26 Score=23.27 Aligned_cols=21 Identities=19% Similarity=0.529 Sum_probs=17.4
Q ss_pred EEEcCCCCCCCHHHHHHHHhc
Q 021295 59 IFVGGIPSSVNEDEFKDFFMQ 79 (314)
Q Consensus 59 l~V~nLp~~~~e~~l~~~F~~ 79 (314)
|.|..+|...||++|++++.+
T Consensus 19 ilieqvp~kpteeelrkvlpk 39 (64)
T PHA01632 19 ILIEQVPQKPTEEELRKVLPK 39 (64)
T ss_pred EehhhcCCCCCHHHHHHHHHH
Confidence 445789999999999988765
No 257
>KOG4388 consensus Hormone-sensitive lipase HSL [Lipid transport and metabolism]
Probab=41.20 E-value=37 Score=33.97 Aligned_cols=61 Identities=16% Similarity=0.342 Sum_probs=40.7
Q ss_pred CCCcceEEEcCCCCCCCHH-HHHHHHhccCCeEEEEEeecCCCCCcceEEEEEe-----CChHHHHHHHHhcC
Q 021295 53 DFKTKKIFVGGIPSSVNED-EFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITF-----DTEQAVDDLLAKGN 119 (314)
Q Consensus 53 ~~~~~~l~V~nLp~~~~e~-~l~~~F~~~G~v~~v~i~~~~~~g~~rG~afV~F-----~~~~~a~~a~~~l~ 119 (314)
..++..|..-++++-+++. .+..-+...|+++.++|+.+-. ..|+.| +..+.++.||+.|.
T Consensus 786 qLPp~~i~ac~mDP~LDD~vmfA~kLr~lG~~v~l~vle~lP------HGFLnft~ls~E~~~~~~~CI~rl~ 852 (880)
T KOG4388|consen 786 QLPPVHIVACAMDPMLDDSVMFARKLRNLGQPVTLRVLEDLP------HGFLNFTALSRETRQAAELCIERLR 852 (880)
T ss_pred cCCCceEEEeccCcchhHHHHHHHHHHhcCCceeehhhhcCC------ccceeHHhhCHHHHHHHHHHHHHHH
Confidence 3455666667777666554 3456677889999999987743 356666 34567777887753
No 258
>KOG1999 consensus RNA polymerase II transcription elongation factor DSIF/SUPT5H/SPT5 [Transcription]
Probab=40.91 E-value=63 Score=34.13 Aligned_cols=28 Identities=14% Similarity=0.286 Sum_probs=23.5
Q ss_pred cceEEEEEeCChHHHHHHHHhcCCeeeC
Q 021295 97 SRGFGFITFDTEQAVDDLLAKGNKLELA 124 (314)
Q Consensus 97 ~rG~afV~F~~~~~a~~a~~~l~~~~~~ 124 (314)
-+||.|||-.....+++||+-+-++.+.
T Consensus 209 lkGyIYIEA~KqshV~~Ai~gv~niy~~ 236 (1024)
T KOG1999|consen 209 LKGYIYIEADKQSHVKEAIEGVRNIYAN 236 (1024)
T ss_pred cceeEEEEechhHHHHHHHhhhhhheec
Confidence 5889999999999999999977665544
No 259
>TIGR00110 ilvD dihydroxy-acid dehydratase. This model generates scores of up to 150 bits vs. 6-phosphogluconate dehydratase, a homologous enzyme.
Probab=40.26 E-value=45 Score=33.05 Aligned_cols=108 Identities=16% Similarity=0.193 Sum_probs=59.4
Q ss_pred CcccEEEEEECCHHHHHHHHHccCccCCcEEEEeecCCCCCCCCCCCCcceEEEcCCCCCCCHHHHHHHHhccCCeEEEE
Q 021295 8 QPRGFGFVTYADPSVVDKVIEDTHIINGKQVEIKRTIPKGAVGSKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQ 87 (314)
Q Consensus 8 ~~kG~aFV~f~~~~~a~~A~~~~~~i~g~~i~v~~~~~~~~~~~~~~~~~~l~V~nLp~~~~e~~l~~~F~~~G~v~~v~ 87 (314)
+.+|-|. .|++++++.+|+.+...-.+.-|-++..-|+...--.+ -. .+-..+...+.-++|-
T Consensus 381 ~~~G~A~-VF~see~a~~ai~~g~i~~gdVvViRyeGPkGgPGMpE-------------ml---~~t~al~g~glg~~Va 443 (535)
T TIGR00110 381 KFEGPAK-VFESEEEALEAILGGKIKEGDVVVIRYEGPKGGPGMPE-------------ML---APTSAIKGMGLGKSVA 443 (535)
T ss_pred EEEEeEE-EECCHHHHHHHHhcCCCCCCeEEEEeCCCCCCCCChhh-------------hc---chHHHHHhCCCCCceE
Confidence 3455554 59999999999997665556666666555553221110 00 0112222233334566
Q ss_pred Eeec-CCCCCcceEEEEEeCChHHHHHHHHhcC---C--eeeCCeEEEEee
Q 021295 88 IMRD-HSTSRSRGFGFITFDTEQAVDDLLAKGN---K--LELAGAQVEVKK 132 (314)
Q Consensus 88 i~~~-~~~g~~rG~afV~F~~~~~a~~a~~~l~---~--~~~~gr~l~V~~ 132 (314)
++.| |.++.++|++.....-+..+-=.|..+. - +++..+.|.|..
T Consensus 444 LITDGRfSGas~G~~igHVsPEAa~GGpIalv~dGD~I~ID~~~r~l~l~v 494 (535)
T TIGR00110 444 LITDGRFSGGTRGLCIGHVSPEAAEGGPIALVEDGDIIIIDIPNRKLDLQV 494 (535)
T ss_pred EeccCccCCcCCCCEEEEEChhhhcCCcEEEEeCCCEEEEECCCCEEEEec
Confidence 7766 7788899977766644433322333321 2 334567777653
No 260
>KOG2591 consensus c-Mpl binding protein, contains La domain [Signal transduction mechanisms]
Probab=40.22 E-value=14 Score=36.32 Aligned_cols=29 Identities=10% Similarity=0.368 Sum_probs=23.5
Q ss_pred EEEECCHHHHHHHHH----ccCccCCcEEEEee
Q 021295 14 FVTYADPSVVDKVIE----DTHIINGKQVEIKR 42 (314)
Q Consensus 14 FV~f~~~~~a~~A~~----~~~~i~g~~i~v~~ 42 (314)
||+|++++||++|.+ +.++|.+|.|..+.
T Consensus 216 yITfesd~DAQqAykylreevk~fqgKpImARI 248 (684)
T KOG2591|consen 216 YITFESDTDAQQAYKYLREEVKTFQGKPIMARI 248 (684)
T ss_pred EEEeecchhHHHHHHHHHHHHHhhcCcchhhhh
Confidence 799999999998886 44578888887654
No 261
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=40.18 E-value=27 Score=33.29 Aligned_cols=22 Identities=18% Similarity=0.365 Sum_probs=16.7
Q ss_pred CcceEEE---cCCCCCCCHHHHHHH
Q 021295 55 KTKKIFV---GGIPSSVNEDEFKDF 76 (314)
Q Consensus 55 ~~~~l~V---~nLp~~~~e~~l~~~ 76 (314)
..+.||| .||||+++|.-++.|
T Consensus 349 ~~k~VmVLAATN~PWdiDEAlrRRl 373 (491)
T KOG0738|consen 349 NSKVVMVLAATNFPWDIDEALRRRL 373 (491)
T ss_pred cceeEEEEeccCCCcchHHHHHHHH
Confidence 3466666 899999998777665
No 262
>PF13193 AMP-binding_C: AMP-binding enzyme C-terminal domain; PDB: 3L8C_B 2VSQ_A 3R44_A 3RG2_B 3A9U_A 3A9V_A 3NI2_A 1V26_B 1ULT_B 1V25_B ....
Probab=39.60 E-value=1.2e+02 Score=20.67 Aligned_cols=52 Identities=17% Similarity=0.204 Sum_probs=32.0
Q ss_pred HHHHHHhccCCeEEEEEeecCCC-CCcceEEEEEeCChHHHHHHHHh-cCCeeeC
Q 021295 72 EFKDFFMQFGDVQEHQIMRDHST-SRSRGFGFITFDTEQAVDDLLAK-GNKLELA 124 (314)
Q Consensus 72 ~l~~~F~~~G~v~~v~i~~~~~~-g~~rG~afV~F~~~~~a~~a~~~-l~~~~~~ 124 (314)
||++.+.++-.|.++.++...+. ....-+|||+. +.+++.+.++. |....+-
T Consensus 1 EIE~~l~~~~~V~~~~V~~~~d~~~g~~l~a~vv~-~~~~i~~~~~~~l~~~~~P 54 (73)
T PF13193_consen 1 EIESVLRQHPGVAEAAVVGVPDEDWGERLVAFVVL-DEEEIRDHLRDKLPPYMVP 54 (73)
T ss_dssp HHHHHHHTSTTEEEEEEEEEEETTTEEEEEEEEEE-HHHHHHHHHHHHS-GGGS-
T ss_pred CHHHHHhcCCCccEEEEEEEEcccccccceeEEEe-eecccccchhhhCCCccee
Confidence 57888888888888766644322 22566899988 44555555553 5544444
No 263
>cd04878 ACT_AHAS N-terminal ACT domain of the Escherichia coli IlvH-like regulatory subunit of acetohydroxyacid synthase (AHAS). ACT_AHAS: N-terminal ACT domain of the Escherichia coli IlvH-like regulatory subunit of acetohydroxyacid synthase (AHAS). AHAS catalyses the first common step in the biosynthesis of the three branched-chain amino acids. The first step involves the condensation of either pyruvate or 2-ketobutyrate with the two-carbon hydroxyethyl fragment derived from another pyruvate molecule, covalently bound to the coenzyme thiamine diphosphate. Bacterial AHASs generally consist of regulatory and catalytic subunits. The effector (valine) binding sites are proposed to be located in two symmetrically related positions in the interface between a pair of N-terminal ACT domains with the C-terminal domain of IlvH contacting the catalytic dimer. Plants Arabidopsis and Oryza have tandem IlvH subunits; both the first and second ACT domain sequences are present in this CD. Members of
Probab=39.27 E-value=1.1e+02 Score=20.06 Aligned_cols=50 Identities=10% Similarity=0.201 Sum_probs=26.0
Q ss_pred CHHHHHHHHhccC-CeEEEEEeecCCCCCcceEEEEEeCCh-HHHHHHHHhcCC
Q 021295 69 NEDEFKDFFMQFG-DVQEHQIMRDHSTSRSRGFGFITFDTE-QAVDDLLAKGNK 120 (314)
Q Consensus 69 ~e~~l~~~F~~~G-~v~~v~i~~~~~~g~~rG~afV~F~~~-~~a~~a~~~l~~ 120 (314)
.-.+|..+|.+++ .|..+....+.... ....+++++.. +.+++++++|..
T Consensus 13 ~l~~i~~~l~~~~~~i~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~~~l~~ 64 (72)
T cd04878 13 VLNRISGLFARRGFNIESLTVGPTEDPG--ISRITIVVEGDDDVIEQIVKQLNK 64 (72)
T ss_pred HHHHHHHHHHhCCCCEEEEEeeecCCCC--eEEEEEEEECCHHHHHHHHHHHhC
Confidence 3467888888775 46666654331111 22233333322 666666666544
No 264
>KOG0633 consensus Histidinol phosphate aminotransferase [Amino acid transport and metabolism]
Probab=38.82 E-value=80 Score=28.47 Aligned_cols=58 Identities=22% Similarity=0.273 Sum_probs=37.9
Q ss_pred CCcceEEEcCC--CC--CCCHHHHHHHHhccCCeEEEEEeecCCCCCcceEEEEEeCChHHHHHHHHhcCCee
Q 021295 54 FKTKKIFVGGI--PS--SVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLE 122 (314)
Q Consensus 54 ~~~~~l~V~nL--p~--~~~e~~l~~~F~~~G~v~~v~i~~~~~~g~~rG~afV~F~~~~~a~~a~~~l~~~~ 122 (314)
...+.+|+..- |. -+++++|+++++..- ..-|+.| .|+|+|.-.+++.+.+++..++.
T Consensus 159 s~iK~~F~tSPgNPtg~~ik~~di~KiLe~p~---nglVVvD--------EAYidFsg~~S~~~lV~kYpNLi 220 (375)
T KOG0633|consen 159 SKIKCIFLTSPGNPTGSIIKEDDILKILEMPD---NGLVVVD--------EAYIDFSGVESRMKLVKKYPNLI 220 (375)
T ss_pred ccceEEEEcCCCCCCcccccHHHHHHHHhCCC---CcEEEEe--------eeeEeeccccccchHhHhCCcee
Confidence 34567777432 22 257889999888653 3334444 59999998888777777765543
No 265
>PRK13562 acetolactate synthase 1 regulatory subunit; Provisional
Probab=38.79 E-value=1.5e+02 Score=21.57 Aligned_cols=62 Identities=11% Similarity=0.185 Sum_probs=43.0
Q ss_pred eEEEcCCCCCCCHHHHHHHHhccC-CeEEEEEeecCCCCCcceEEEEEe-CChHHHHHHHHhcCCee
Q 021295 58 KIFVGGIPSSVNEDEFKDFFMQFG-DVQEHQIMRDHSTSRSRGFGFITF-DTEQAVDDLLAKGNKLE 122 (314)
Q Consensus 58 ~l~V~nLp~~~~e~~l~~~F~~~G-~v~~v~i~~~~~~g~~rG~afV~F-~~~~~a~~a~~~l~~~~ 122 (314)
+|+|.|-|--+ ..+..+|++-+ .|+++.+-.....+-+| +-+|.- .+++.+++.+++|+++.
T Consensus 6 svlVeN~~GVL--~Rit~lFsRRg~NI~SLtvg~Te~~~iSR-mtivv~~~d~~~ieqI~kQL~Kli 69 (84)
T PRK13562 6 KLQVADQVSTL--NRITSAFVRLQYNIDTLHVTHSEQPGISN-MEIQVDIQDDTSLHILIKKLKQQI 69 (84)
T ss_pred EEEEECCCCHH--HHHHHHHhccCcCeeeEEecccCCCCceE-EEEEEeCCCHHHHHHHHHHHhCCc
Confidence 45555554332 45778898766 68888888765555566 455554 88899999999988755
No 266
>PF01037 AsnC_trans_reg: AsnC family; InterPro: IPR019887 The many bacterial transcription regulation proteins which bind DNA through a 'helix-turn-helix' motif can be classified into subfamilies on the basis of sequence similarities. One such family is the AsnC/Lrp subfamily []. The Lrp family of transcriptional regulators appears to be widely distributed among bacteria and archaea, as an important regulatory system of the amino acid metabolism and related processes []. Members of the Lrp family are small DNA-binding proteins with molecular masses of around 15 kDa. Target promoters often contain a number of binding sites that typically lack obvious inverted repeat elements, and to which binding is usually co-operative. LrpA from Pyrococcus furiosus is the first Lrp-like protein to date of which a three-dimensional structure has been solved. In the crystal structure LrpA forms an octamer consisting of four dimers. The structure revealed that the N-terminal part of the protein consists of a helix-turn-helix (HTH) domain, a fold generally involved in DNA binding. The C terminus of Lrp-like proteins has a beta-fold, where the two alpha-helices are located at one side of the four-stranded antiparallel beta-sheet. LrpA forms a homodimer mainly through interactions between the beta-strands of this C-terminal domain, and an octamer through further interactions between the second alpha-helix and fourth beta-strand of the motif. Hence, the C-terminal domain of Lrp-like proteins appears to be involved in ligand-response and activation [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 2DJW_F 2GQQ_A 2ZNY_E 2ZNZ_G 1RI7_A 2CYY_A 2E1C_A 2CG4_B 2DBB_B 1I1G_A ....
Probab=38.48 E-value=1.2e+02 Score=20.39 Aligned_cols=45 Identities=13% Similarity=0.167 Sum_probs=36.6
Q ss_pred CHHHHHHHHhccCCeEEEEEeecCCCCCcceEEEEEeCChHHHHHHHHh
Q 021295 69 NEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAK 117 (314)
Q Consensus 69 ~e~~l~~~F~~~G~v~~v~i~~~~~~g~~rG~afV~F~~~~~a~~a~~~ 117 (314)
..+++.+++.+.-+|..+..+ ++...=.+.|.+.|.+++++.+..
T Consensus 11 ~~~~~~~~l~~~p~V~~~~~v----tG~~d~~~~v~~~d~~~l~~~i~~ 55 (74)
T PF01037_consen 11 AYDEFAEALAEIPEVVECYSV----TGEYDLILKVRARDMEELEEFIRE 55 (74)
T ss_dssp HHHHHHHHHHTSTTEEEEEEE----SSSSSEEEEEEESSHHHHHHHHHH
T ss_pred hHHHHHHHHHcCCCEEEEEEE----eCCCCEEEEEEECCHHHHHHHHHH
Confidence 367888999999999999887 444556789999999999999554
No 267
>PF14350 Beta_protein: Beta protein
Probab=38.29 E-value=69 Score=29.73 Aligned_cols=38 Identities=24% Similarity=0.306 Sum_probs=25.0
Q ss_pred CCHHHHHHHHhccC-CeEEEEEeecCCCCCcceEEEEEeCChHHHHH
Q 021295 68 VNEDEFKDFFMQFG-DVQEHQIMRDHSTSRSRGFGFITFDTEQAVDD 113 (314)
Q Consensus 68 ~~e~~l~~~F~~~G-~v~~v~i~~~~~~g~~rG~afV~F~~~~~a~~ 113 (314)
..+++|.++++... ...+|.|+.| +..|.-.+..++.+
T Consensus 137 ~~~~~i~~i~~~l~~~~~~~~lilD--------~~~i~~~~~~~~~~ 175 (347)
T PF14350_consen 137 DFPSEISRILAALGLSPNEVDLILD--------LGDIRDSDESAVAE 175 (347)
T ss_pred hHHHHHHHHHHHcCCCccceEEEEE--------CCccCCcchHHHHH
Confidence 34577888888777 5677888888 55565555544433
No 268
>KOG2943 consensus Predicted glyoxalase [Carbohydrate transport and metabolism]
Probab=37.91 E-value=1.9e+02 Score=25.60 Aligned_cols=110 Identities=23% Similarity=0.305 Sum_probs=54.0
Q ss_pred ccEEEEEECCHHHHHHHHHccCcc---CCcEEEEeecCCC--------CCCCCCCCCcceEEEcCCCCCCC-HHHHH--H
Q 021295 10 RGFGFVTYADPSVVDKVIEDTHII---NGKQVEIKRTIPK--------GAVGSKDFKTKKIFVGGIPSSVN-EDEFK--D 75 (314)
Q Consensus 10 kG~aFV~f~~~~~a~~A~~~~~~i---~g~~i~v~~~~~~--------~~~~~~~~~~~~l~V~nLp~~~~-e~~l~--~ 75 (314)
..|..|+..+.+.+.++-+..... .+.-+.. ...|. ...+++....-.|-|++|..++. ++++. +
T Consensus 96 ndfg~i~I~s~dv~~~ve~v~~p~~~~~g~~~~~-v~dPdGykF~l~~~~p~s~pv~~V~l~VgdL~ks~kyw~~~lgM~ 174 (299)
T KOG2943|consen 96 NDFGGITIASDDVFSKVEKVNAPGGKGSGCGIAF-VKDPDGYKFYLIDRGPQSDPVLQVMLNVGDLQKSIKYWEKLLGMK 174 (299)
T ss_pred CCcccEEEeHHHHHHHHHHhcCcCCcccceEEEE-EECCCCcEEEEeccCCCCCCeEEEEEEehhHHHHHHHHHHHhCcc
Confidence 356777777777777766533322 1111111 11110 11222333445677888876542 22221 1
Q ss_pred HHh----------ccCC---eEEEEEeecCCCCCcceEEEEEeCCh----HHHHHHHHhcCCe
Q 021295 76 FFM----------QFGD---VQEHQIMRDHSTSRSRGFGFITFDTE----QAVDDLLAKGNKL 121 (314)
Q Consensus 76 ~F~----------~~G~---v~~v~i~~~~~~g~~rG~afV~F~~~----~~a~~a~~~l~~~ 121 (314)
+++ .|++ +.++.-..+ .+.+.++|+.|.|.-+ ...+.||+..|..
T Consensus 175 ilekeek~t~~~mgYgd~q~~LElt~~~~-~id~~kg~griafaip~d~~~~l~e~iK~~n~~ 236 (299)
T KOG2943|consen 175 ILEKEEKYTRARMGYGDEQCVLELTYNYD-VIDRAKGFGRIAFAIPTDDLPKLQEAIKSANGT 236 (299)
T ss_pred hhhhhhhhhhhhhccCCcceEEEEEeccC-cccccccceeEEEeccccccccHHHHHHHhccc
Confidence 111 2332 223333333 3566789999999654 4566777765553
No 269
>TIGR00755 ksgA dimethyladenosine transferase. Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase
Probab=37.36 E-value=1.1e+02 Score=26.80 Aligned_cols=23 Identities=9% Similarity=0.119 Sum_probs=19.9
Q ss_pred eEEEcCCCCCCCHHHHHHHHhcc
Q 021295 58 KIFVGGIPSSVNEDEFKDFFMQF 80 (314)
Q Consensus 58 ~l~V~nLp~~~~e~~l~~~F~~~ 80 (314)
.+.|+|||+.++.+.|.++++..
T Consensus 96 ~~vvsNlPy~i~~~il~~ll~~~ 118 (253)
T TIGR00755 96 LKVVSNLPYNISSPLIFKLLEKP 118 (253)
T ss_pred ceEEEcCChhhHHHHHHHHhccC
Confidence 57899999999999999998644
No 270
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=37.35 E-value=37 Score=28.69 Aligned_cols=33 Identities=18% Similarity=0.249 Sum_probs=22.0
Q ss_pred EEEEECCHHHHHHHHHcc----CccCCcEEEEeecCC
Q 021295 13 GFVTYADPSVVDKVIEDT----HIINGKQVEIKRTIP 45 (314)
Q Consensus 13 aFV~f~~~~~a~~A~~~~----~~i~g~~i~v~~~~~ 45 (314)
..|.|.+.++|++|.... ..+.++.+++-...+
T Consensus 34 i~v~f~~~~~A~~~r~~l~~~~~~~~g~~l~~yf~~~ 70 (184)
T PF04847_consen 34 IRVVFESPESAQRARQLLHWDGTSFNGKRLRVYFGQP 70 (184)
T ss_dssp EEEE-SSTTHHHHHHHTST--TSEETTEE-EEE----
T ss_pred EEEEeCCHHHHHHHHHHhcccccccCCCceEEEEccc
Confidence 578999999999999853 477888888866543
No 271
>PF14111 DUF4283: Domain of unknown function (DUF4283)
Probab=37.31 E-value=11 Score=30.15 Aligned_cols=63 Identities=10% Similarity=0.154 Sum_probs=40.3
Q ss_pred CCHHHHHHHHhcc-CCeEEEEEeecCCCCCcceEEEEEeCChHHHHHHHHhcCCeeeCCeEEEEeecCCC
Q 021295 68 VNEDEFKDFFMQF-GDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVKKAEPK 136 (314)
Q Consensus 68 ~~e~~l~~~F~~~-G~v~~v~i~~~~~~g~~rG~afV~F~~~~~a~~a~~~l~~~~~~gr~l~V~~a~~~ 136 (314)
++.+.|.+.+.+. .....+.|..- ..++..+.|+++++++++++. ....+.+..|.++...+.
T Consensus 29 ~~~~~l~~~l~~~W~~~~~~~i~~l-----~~~~fl~~F~~~~d~~~vl~~-~p~~~~~~~~~l~~W~~~ 92 (153)
T PF14111_consen 29 ISLSALEQELAKIWKLKGGVKIRDL-----GDNLFLFQFESEEDRQRVLKG-GPWNFNGHFLILQRWSPD 92 (153)
T ss_pred CCHHHHHHHHHHHhCCCCcEEEEEe-----CCCeEEEEEEeccceeEEEec-ccccccccchhhhhhccc
Confidence 4556666665542 22223333322 234889999999999999986 566677787877766543
No 272
>PRK13016 dihydroxy-acid dehydratase; Provisional
Probab=37.28 E-value=1.9e+02 Score=29.07 Aligned_cols=109 Identities=17% Similarity=0.209 Sum_probs=57.9
Q ss_pred CcccEEEEEECCHHHHHHHHHccC-cc-CCcEEEEeecCCCCCCCCCCCCcceEEEcCCCCCCCHHHHHHHHhccCCeEE
Q 021295 8 QPRGFGFVTYADPSVVDKVIEDTH-II-NGKQVEIKRTIPKGAVGSKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQE 85 (314)
Q Consensus 8 ~~kG~aFV~f~~~~~a~~A~~~~~-~i-~g~~i~v~~~~~~~~~~~~~~~~~~l~V~nLp~~~~e~~l~~~F~~~G~v~~ 85 (314)
+.+|-|. .|+++++|.+|+.+.. +| .+.-|-++..-|+.-.- .|+.---.-...+.. .|- ++
T Consensus 404 ~~~GpA~-VF~see~a~~ai~~g~i~i~~GdVvVIRyeGPkGgPG-------------MpE~~ml~~~~~~~~-~Gl-~~ 467 (577)
T PRK13016 404 VHRGPAL-VFDSYPEMKAAIDDENLDVTPDHVMVLRNAGPQGGPG-------------MPEWGMLPIPKKLLK-QGV-RD 467 (577)
T ss_pred EEEeeEE-EECCHHHHHHHHhCCCcCCCCCeEEEEeCCCCCCCCC-------------CcccccchhHHHHHH-cCC-ce
Confidence 3455554 4999999999999553 23 44555555554543211 111000000122333 454 67
Q ss_pred EEEeec-CCCCCcceEEEEEeCChHHHHHHHHhc---CC--eeeCCeEEEEee
Q 021295 86 HQIMRD-HSTSRSRGFGFITFDTEQAVDDLLAKG---NK--LELAGAQVEVKK 132 (314)
Q Consensus 86 v~i~~~-~~~g~~rG~afV~F~~~~~a~~a~~~l---~~--~~~~gr~l~V~~ 132 (314)
|-+++| |.++-++|++.....-+..+-=-|..+ +- +++..+.|.|..
T Consensus 468 valITDGRfSG~s~G~~igHVsPEAa~GGPIalV~dGD~I~IDi~~r~L~l~v 520 (577)
T PRK13016 468 MVRISDARMSGTSYGACVLHVAPEAYVGGPLALVRTGDIIELDVPARRLHLLV 520 (577)
T ss_pred eEEeccCccCCccCCCEEEEEChhhhcCCcEEEEeCCCEEEEEcCCCEEEEec
Confidence 776766 778889997777664443332223222 22 334567777753
No 273
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
Probab=37.20 E-value=1.5e+02 Score=26.54 Aligned_cols=33 Identities=9% Similarity=0.092 Sum_probs=24.7
Q ss_pred cceEEEcCCCCCCCHHHHHHHHhccCCeEEEEE
Q 021295 56 TKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQI 88 (314)
Q Consensus 56 ~~~l~V~nLp~~~~e~~l~~~F~~~G~v~~v~i 88 (314)
.....|+|||++++-.-|.++++..-.+..+.+
T Consensus 95 ~~~~vVaNlPY~Isspii~kll~~~~~~~~~v~ 127 (259)
T COG0030 95 QPYKVVANLPYNISSPILFKLLEEKFIIQDMVL 127 (259)
T ss_pred CCCEEEEcCCCcccHHHHHHHHhccCccceEEE
Confidence 456779999999999999999887544433333
No 274
>PF03439 Spt5-NGN: Early transcription elongation factor of RNA pol II, NGN section; InterPro: IPR005100 Spt5p and prokaryotic NusG are shown to contain a novel 'NGN' domain. The combined NGN and KOW motif regions of Spt5 form the binding domain with Spt4 []. Spt5 complexes with Spt4 as a 1:1 heterodimer snf this Spt5-Spt4 complex regulates early transcription elongation by RNA polymerase II and has an imputed role in pre-mRNA processing via its physical association with mRNA capping enzymes. The Schizosaccharomyces pombe core Spt5-Spt4 complex is a heterodimer bearing a trypsin-resistant Spt4-binding domain within the Spt5 subunit []. ; PDB: 3H7H_B 3QQC_D 3P8B_B 2EXU_A.
Probab=36.65 E-value=38 Score=24.52 Aligned_cols=26 Identities=23% Similarity=0.309 Sum_probs=21.8
Q ss_pred CcccEEEEEECCHHHHHHHHHccCcc
Q 021295 8 QPRGFGFVTYADPSVVDKVIEDTHII 33 (314)
Q Consensus 8 ~~kG~aFV~f~~~~~a~~A~~~~~~i 33 (314)
..|||-|||-.+++++.+|++....+
T Consensus 42 ~lkGyIyVEA~~~~~V~~ai~gi~~i 67 (84)
T PF03439_consen 42 SLKGYIYVEAERESDVKEAIRGIRHI 67 (84)
T ss_dssp TSTSEEEEEESSHHHHHHHHTT-TTE
T ss_pred CCceEEEEEeCCHHHHHHHHhcccce
Confidence 47999999999999999999965433
No 275
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=36.33 E-value=42 Score=25.35 Aligned_cols=35 Identities=20% Similarity=0.428 Sum_probs=24.3
Q ss_pred cccEEEEEECCHHHHHHHHH-ccCccCCc-EEEEeec
Q 021295 9 PRGFGFVTYADPSVVDKVIE-DTHIINGK-QVEIKRT 43 (314)
Q Consensus 9 ~kG~aFV~f~~~~~a~~A~~-~~~~i~g~-~i~v~~~ 43 (314)
..-.-.|+|.++.+|++||+ +...+.+. .+-|++.
T Consensus 53 ~~NWi~I~Y~~~~~A~rAL~~NG~i~~g~~mvGV~~~ 89 (100)
T PF05172_consen 53 GGNWIHITYDNPLSAQRALQKNGTIFSGSLMVGVKPC 89 (100)
T ss_dssp CTTEEEEEESSHHHHHHHHTTTTEEETTCEEEEEEE-
T ss_pred CCCEEEEECCCHHHHHHHHHhCCeEEcCcEEEEEEEc
Confidence 34467899999999999999 54556554 3445544
No 276
>PRK08559 nusG transcription antitermination protein NusG; Validated
Probab=35.91 E-value=84 Score=25.53 Aligned_cols=35 Identities=9% Similarity=0.200 Sum_probs=25.7
Q ss_pred eEEEEEeecCCCCCcceEEEEEeCChHHHHHHHHhcCCee
Q 021295 83 VQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLE 122 (314)
Q Consensus 83 v~~v~i~~~~~~g~~rG~afV~F~~~~~a~~a~~~l~~~~ 122 (314)
|.+|.++.. ..||.||+.+..+++..++..+..+.
T Consensus 36 i~~i~vp~~-----fpGYVfVe~~~~~~~~~~i~~v~~v~ 70 (153)
T PRK08559 36 IYAILAPPE-----LKGYVLVEAESKGAVEEAIRGIPHVR 70 (153)
T ss_pred EEEEEccCC-----CCcEEEEEEEChHHHHHHHhcCCCEe
Confidence 445554433 68999999998888899988775533
No 277
>smart00666 PB1 PB1 domain. Phox and Bem1p domain, present in many eukaryotic cytoplasmic signalling proteins. The domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pairs associate.
Probab=35.87 E-value=1.4e+02 Score=20.88 Aligned_cols=55 Identities=7% Similarity=0.266 Sum_probs=34.2
Q ss_pred EEcCCCCCCCHHHHHHHHh-ccCCe-EEEEEeecCCCCCcceEEEEEeCChHHHHHHHHhcC
Q 021295 60 FVGGIPSSVNEDEFKDFFM-QFGDV-QEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGN 119 (314)
Q Consensus 60 ~V~nLp~~~~e~~l~~~F~-~~G~v-~~v~i~~~~~~g~~rG~afV~F~~~~~a~~a~~~l~ 119 (314)
+.-.||..++-++|.+... +|... ..+.|....+.+ -+|+..+.++++.|++...
T Consensus 13 ~~~~~~~~~s~~dL~~~i~~~~~~~~~~~~l~Y~Dedg-----d~v~l~sd~Dl~~a~~~~~ 69 (81)
T smart00666 13 RRLSVPRDISFEDLRSKVAKRFGLDNQSFTLKYQDEDG-----DLVSLTSDEDLEEAIEEYD 69 (81)
T ss_pred EEEEECCCCCHHHHHHHHHHHhCCCCCCeEEEEECCCC-----CEEEecCHHHHHHHHHHHH
Confidence 3344677888888887664 44321 233333221221 2899999999999999753
No 278
>PF01282 Ribosomal_S24e: Ribosomal protein S24e; InterPro: IPR001976 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This family contains the S24e ribosomal proteins from eukaryotes and archaebacteria. These proteins have 101 to 148 amino acids.; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 2V94_B 1YWX_A 2G1D_A 3IZ6_U 1XN9_A 2XZM_P 2XZN_P 3U5G_Y 3J16_D 3IZB_U ....
Probab=35.64 E-value=1.7e+02 Score=21.25 Aligned_cols=47 Identities=17% Similarity=0.358 Sum_probs=25.4
Q ss_pred CCCHHHHHHHHhcc-C----CeEEEEEeecCCCCCcceEEEEEeCChHHHHHH
Q 021295 67 SVNEDEFKDFFMQF-G----DVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDL 114 (314)
Q Consensus 67 ~~~e~~l~~~F~~~-G----~v~~v~i~~~~~~g~~rG~afV~F~~~~~a~~a 114 (314)
+.+..||++.+.+. . .|.-..|....-.+++.+||.| |++.+.+++.
T Consensus 12 Tpsr~ei~~klA~~~~~~~~~ivv~~~~t~fG~~~s~g~a~I-Yd~~e~~kk~ 63 (84)
T PF01282_consen 12 TPSRKEIREKLAAMLNVDPDLIVVFGIKTEFGGGKSTGFAKI-YDSAEALKKF 63 (84)
T ss_dssp S--HHHHHHHHHHHHTSTGCCEEEEEEEESSSSSEEEEEEEE-ESSHHHHHHH
T ss_pred CCCHHHHHHHHHHHhCCCCCeEEEeccEecCCCceEEEEEEE-eCCHHHHHHh
Confidence 45677888777543 2 2333334444444556677665 6777766654
No 279
>COG5236 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=35.50 E-value=1.2e+02 Score=28.14 Aligned_cols=52 Identities=12% Similarity=0.096 Sum_probs=40.4
Q ss_pred CHHHHHHHHhccCCeEEEEEeecCCCCCcceEEEEEeCChHHHHHHHHhcCCeeeCCeEE
Q 021295 69 NEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQV 128 (314)
Q Consensus 69 ~e~~l~~~F~~~G~v~~v~i~~~~~~g~~rG~afV~F~~~~~a~~a~~~l~~~~~~gr~l 128 (314)
+-++|.++|++---|..+...++- -||+|.++-++++-|-..++..+...++
T Consensus 263 ~Y~~Le~HF~~~hy~ct~qtc~~~--------k~~vf~~~~el~~h~~~~h~~~~~~~~~ 314 (493)
T COG5236 263 SYEDLEAHFRNAHYCCTFQTCRVG--------KCYVFPYHTELLEHLTRFHKVNARLSEI 314 (493)
T ss_pred CHHHHHHHhhcCceEEEEEEEecC--------cEEEeccHHHHHHHHHHHhhcccccCcC
Confidence 458999999987778888777662 4889999988888887777777666543
No 280
>COG5353 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=35.18 E-value=2.1e+02 Score=23.33 Aligned_cols=56 Identities=14% Similarity=0.353 Sum_probs=39.6
Q ss_pred ceEEEcCCCCCCCHHHHHHHHhcc---CCeEEEEEeecCCC---------CCcce-EEEEEeCChHHHH
Q 021295 57 KKIFVGGIPSSVNEDEFKDFFMQF---GDVQEHQIMRDHST---------SRSRG-FGFITFDTEQAVD 112 (314)
Q Consensus 57 ~~l~V~nLp~~~~e~~l~~~F~~~---G~v~~v~i~~~~~~---------g~~rG-~afV~F~~~~~a~ 112 (314)
.+|++.-++..++|++.++..++- .+++.|++-+..++ ...+. |-+|.|++-+...
T Consensus 88 ~KI~~k~asqGISe~~a~~~i~kE~~~~e~~~V~Lg~e~~~PiWEV~y~dkeg~~s~~~vdFetG~~lk 156 (161)
T COG5353 88 GKIYSKKASQGISEEDARAIISKEKAVKEIKSVTLGREKEKPIWEVTYLDKEGRLSFYYVDFETGKELK 156 (161)
T ss_pred CeEEEEehhcCCCHHHHHHHHhhhccccceeEEEEEeeCCceeEEEeecCccCcceEEEEEeccchhhh
Confidence 689999999999999999998875 45666666554332 11233 7788888765543
No 281
>KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only]
Probab=35.14 E-value=42 Score=34.15 Aligned_cols=38 Identities=13% Similarity=0.384 Sum_probs=28.7
Q ss_pred CCCcccEEEEEECCHHHHHHHHHccC--ccCCcEEEEeec
Q 021295 6 TGQPRGFGFVTYADPSVVDKVIEDTH--IINGKQVEIKRT 43 (314)
Q Consensus 6 tg~~kG~aFV~f~~~~~a~~A~~~~~--~i~g~~i~v~~~ 43 (314)
.-+.+=|+||.|.+..+|++|++.++ .|....+++-|.
T Consensus 215 k~r~r~cgfvafmnR~D~era~k~lqg~iv~~~e~K~gWg 254 (877)
T KOG0151|consen 215 KRRERNCGFVAFMNRADAERALKELQGIIVMEYEMKLGWG 254 (877)
T ss_pred hccccccceeeehhhhhHHHHHHHhcceeeeeeeeeeccc
Confidence 34566689999999999999999544 555666666665
No 282
>PF13291 ACT_4: ACT domain; PDB: 2KO1_B 3IBW_A.
Probab=35.10 E-value=1.5e+02 Score=20.52 Aligned_cols=53 Identities=6% Similarity=0.109 Sum_probs=34.7
Q ss_pred CHHHHHHHHhccC-CeEEEEEeecCCCCCcceEEEEEeCChHHHHHHHHhcCCe
Q 021295 69 NEDEFKDFFMQFG-DVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKL 121 (314)
Q Consensus 69 ~e~~l~~~F~~~G-~v~~v~i~~~~~~g~~rG~afV~F~~~~~a~~a~~~l~~~ 121 (314)
--.+|...+++.+ .|..+.+......+......-|+..+.+.++..+++|..+
T Consensus 19 lL~dI~~~i~~~~~nI~~i~~~~~~~~~~~~~~l~v~V~d~~~L~~ii~~L~~i 72 (80)
T PF13291_consen 19 LLADITSVISENGVNIRSINARTNKDDGTARITLTVEVKDLEHLNQIIRKLRQI 72 (80)
T ss_dssp HHHHHHHHHHCSSSEEEEEEEEE--ETTEEEEEEEEEESSHHHHHHHHHHHCTS
T ss_pred HHHHHHHHHHHCCCCeEEEEeEEeccCCEEEEEEEEEECCHHHHHHHHHHHHCC
Confidence 3467888887764 5777777765323334444556668889999988887553
No 283
>cd04905 ACT_CM-PDT C-terminal ACT domain of the bifunctional chorismate mutase-prephenate dehydratase (CM-PDT) enzyme and the prephenate dehydratase (PDT) enzyme. The C-terminal ACT domain of the bifunctional chorismate mutase-prephenate dehydratase (CM-PDT) enzyme and the prephenate dehydratase (PDT) enzyme, found in plants, fungi, bacteria, and archaea. The P-protein of E. coli (CM-PDT, PheA) catalyzes the conversion of chorismate to prephenate and then the decarboxylation and dehydration to form phenylpyruvate. These are the first two steps in the biosynthesis of L-Phe and L-Tyr via the shikimate pathway in microorganisms and plants. The E. coli P-protein (CM-PDT) has three domains with an N-terminal domain with chorismate mutase activity, a middle domain with prephenate dehydratase activity, and an ACT regulatory C-terminal domain. The prephenate dehydratase enzyme has a PDT and ACT domain. The ACT domain is essential to bring about the negative allosteric regulation by L-Phe bindi
Probab=34.55 E-value=1.6e+02 Score=20.54 Aligned_cols=51 Identities=14% Similarity=0.156 Sum_probs=31.0
Q ss_pred CHHHHHHHHhccC-CeEEEEEeecCCCCCcceEEEEEeCC---hHHHHHHHHhcCC
Q 021295 69 NEDEFKDFFMQFG-DVQEHQIMRDHSTSRSRGFGFITFDT---EQAVDDLLAKGNK 120 (314)
Q Consensus 69 ~e~~l~~~F~~~G-~v~~v~i~~~~~~g~~rG~afV~F~~---~~~a~~a~~~l~~ 120 (314)
.-.+|.+.|++++ .|..+...+.. +....=.-+|+++. .++++++++.|..
T Consensus 14 ~L~~il~~f~~~~ini~~i~s~p~~-~~~~~~~f~vd~~~~~~~~~~~~~l~~l~~ 68 (80)
T cd04905 14 ALYDVLGVFAERGINLTKIESRPSK-GGLWEYVFFIDFEGHIEDPNVAEALEELKR 68 (80)
T ss_pred HHHHHHHHHHHCCcCEEEEEEEEcC-CCCceEEEEEEEECCCCCHHHHHHHHHHHH
Confidence 3467788888885 56666555442 22233344566763 5677778877654
No 284
>KOG3262 consensus H/ACA small nucleolar RNP component GAR1 [Translation, ribosomal structure and biogenesis]
Probab=34.54 E-value=2.9e+02 Score=23.43 Aligned_cols=17 Identities=6% Similarity=0.122 Sum_probs=9.1
Q ss_pred EEEEeCChHHHHHHHHh
Q 021295 101 GFITFDTEQAVDDLLAK 117 (314)
Q Consensus 101 afV~F~~~~~a~~a~~~ 117 (314)
|=|-+++.+.+-++-|.
T Consensus 81 APIylenk~qIGKVDEI 97 (215)
T KOG3262|consen 81 APIYLENKEQIGKVDEI 97 (215)
T ss_pred Cceeecchhhhcchhhh
Confidence 45566666655554443
No 285
>COG0150 PurM Phosphoribosylaminoimidazole (AIR) synthetase [Nucleotide transport and metabolism]
Probab=34.50 E-value=11 Score=34.91 Aligned_cols=48 Identities=17% Similarity=0.315 Sum_probs=37.6
Q ss_pred HHHHHHHHhccCCeEEEEEeecCCCCCcceEEEEEeCChHHHHHHHHhcCCe
Q 021295 70 EDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKL 121 (314)
Q Consensus 70 e~~l~~~F~~~G~v~~v~i~~~~~~g~~rG~afV~F~~~~~a~~a~~~l~~~ 121 (314)
..+|.+++.+.++|.+-.+.+.- +-|..||....+++++++++.|+..
T Consensus 275 ~p~iF~~i~~~G~v~~~EM~rtF----NmGvG~v~iv~~e~~~~~~~~l~~~ 322 (345)
T COG0150 275 PPPIFKWLQKAGNVEREEMYRTF----NMGVGMVLIVPEEDAEKALALLKEQ 322 (345)
T ss_pred CcHHHHHHHHhcCCCHHHHHHHh----cCccceEEEEcHHHHHHHHHHHHhc
Confidence 46788888899988877766553 2467888888999999999987654
No 286
>PF12829 Mhr1: Transcriptional regulation of mitochondrial recombination; InterPro: IPR024629 These proteins are involved in regulation of RNA polymerase II-dependent transcription. They are also involved in regulation of mitochondrial DNA recombination, maintenance, repair, and generation of homoplasmic cells [, , , ].
Probab=34.48 E-value=72 Score=23.66 Aligned_cols=51 Identities=12% Similarity=0.102 Sum_probs=33.7
Q ss_pred CCCCCCHHHHHHHHhccCC-eEEEEEeecCCCCCcceEEEEEeCChHHHHHHHHhc
Q 021295 64 IPSSVNEDEFKDFFMQFGD-VQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKG 118 (314)
Q Consensus 64 Lp~~~~e~~l~~~F~~~G~-v~~v~i~~~~~~g~~rG~afV~F~~~~~a~~a~~~l 118 (314)
+...+++..|...|..-+. -+...+-+|. -+-+|.|+|.+.+.+.+|.+.|
T Consensus 20 ~~p~l~~~~i~~Q~~~~gkk~~pp~lRkD~----W~pm~vv~f~~~~~g~~~yq~L 71 (91)
T PF12829_consen 20 QTPNLDNNQILKQFPFPGKKNKPPSLRKDY----WRPMCVVNFPNYEVGVSAYQKL 71 (91)
T ss_pred cCcccChhHHHHhccCCCcccCCchhcccc----ceEeEEEECCChHHHHHHHHHH
Confidence 4455667777766654442 2233444443 3569999999999999998765
No 287
>KOG0638 consensus 4-hydroxyphenylpyruvate dioxygenase [Amino acid transport and metabolism]
Probab=34.44 E-value=1.1e+02 Score=28.21 Aligned_cols=74 Identities=14% Similarity=0.139 Sum_probs=40.1
Q ss_pred CCCcccEEEEEECCHHHHHHHHH--ccC---ccCCcEEEEeecCCCCCCCCCCCCcceEEEcCCCCCCCHHHHHHHHhcc
Q 021295 6 TGQPRGFGFVTYADPSVVDKVIE--DTH---IINGKQVEIKRTIPKGAVGSKDFKTKKIFVGGIPSSVNEDEFKDFFMQF 80 (314)
Q Consensus 6 tg~~kG~aFV~f~~~~~a~~A~~--~~~---~i~g~~i~v~~~~~~~~~~~~~~~~~~l~V~nLp~~~~e~~l~~~F~~~ 80 (314)
-++..-|++|+|--....+.|-- ... .+.-+-++.. ...+.+-.-.+.+.+||-+-+....+.+.-++|.++
T Consensus 12 ~g~~l~f~Hi~F~vgna~q~A~~y~~~fGfep~A~~~letg---~~~~~s~alr~g~~vFv~~s~~~p~~~~~G~~l~~H 88 (381)
T KOG0638|consen 12 AGKFLRFHHIEFWVGNAKQAARWYCSGFGFEPLAYRGLETG---SREWASHALRQGKIVFVFNSAYNPDNSEYGDHLVKH 88 (381)
T ss_pred ccceeeeeEEEEEecCcHHHHHHHHhhcCCcchhccccccc---chHHHHHHhhcCCEEEEEecCCCCCchhhhhhhhhc
Confidence 45667789999966555444443 111 1111111110 011111122345678888888887777888888887
Q ss_pred CC
Q 021295 81 GD 82 (314)
Q Consensus 81 G~ 82 (314)
|.
T Consensus 89 gd 90 (381)
T KOG0638|consen 89 GD 90 (381)
T ss_pred cc
Confidence 64
No 288
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=34.42 E-value=22 Score=27.08 Aligned_cols=20 Identities=25% Similarity=0.569 Sum_probs=14.0
Q ss_pred EEEEEECCHHHHHHHHHccC
Q 021295 12 FGFVTYADPSVVDKVIEDTH 31 (314)
Q Consensus 12 ~aFV~f~~~~~a~~A~~~~~ 31 (314)
-|+|-|.++++|++|++...
T Consensus 39 ~g~VRf~~~~~A~~a~~~~~ 58 (105)
T PF08777_consen 39 EGYVRFKTPEAAQKALEKLK 58 (105)
T ss_dssp EEEEEESS---HHHHHHHHH
T ss_pred EEEEEECCcchHHHHHHHHH
Confidence 58999999999999998543
No 289
>KOG3702 consensus Nuclear polyadenylated RNA binding protein [RNA processing and modification]
Probab=33.98 E-value=15 Score=36.83 Aligned_cols=73 Identities=12% Similarity=0.117 Sum_probs=54.2
Q ss_pred cceEEEcCCCCCCCHHHHHHHHhccCCeEEEEEeecCCCCCcceEEEEEeCChHHHHHHHHhcCCeeeCCeEEE
Q 021295 56 TKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVE 129 (314)
Q Consensus 56 ~~~l~V~nLp~~~~e~~l~~~F~~~G~v~~v~i~~~~~~g~~rG~afV~F~~~~~a~~a~~~l~~~~~~gr~l~ 129 (314)
..+||+-+--...+...+..++..+.+++.+.++..........-|+++|..+.+++.|... ..+.+....|+
T Consensus 511 ~p~i~~~~~~~~s~~~s~s~~s~~~~~ltk~k~l~~Cky~~~Ct~a~Ce~~HPtaa~~~~s~-p~k~fa~~~~k 583 (681)
T KOG3702|consen 511 QPTIFVANGHGGSNPDSLSRHSEKKNELTKAKILTRCKYGPACTSAECEFAHPTAAENAKSL-PNKKFASKCLK 583 (681)
T ss_pred CCceecccccccCCCcchhhCcccccccccceeeccccCCCcCCchhhhhcCCcchhhhhcc-cccccccccee
Confidence 34889888888888889999999999988888877766665566799999999888766554 33444444433
No 290
>PF09895 DUF2122: RecB-family nuclease (DUF2122); InterPro: IPR018665 This family of archaeal proteins include RecB nuclease-like proteins as well as proteins of no known function.
Probab=33.73 E-value=2.2e+02 Score=21.79 Aligned_cols=16 Identities=13% Similarity=0.216 Sum_probs=14.2
Q ss_pred EEEEECCHHHHHHHHH
Q 021295 13 GFVTYADPSVVDKVIE 28 (314)
Q Consensus 13 aFV~f~~~~~a~~A~~ 28 (314)
-||.|.|..||.+.++
T Consensus 21 ~livlpdl~DAiEvl~ 36 (106)
T PF09895_consen 21 SLIVLPDLKDAIEVLK 36 (106)
T ss_pred cEEEeCCHHHHHHhcC
Confidence 6899999999999887
No 291
>KOG2311 consensus NAD/FAD-utilizing protein possibly involved in translation [Translation, ribosomal structure and biogenesis]
Probab=33.40 E-value=87 Score=30.83 Aligned_cols=40 Identities=10% Similarity=0.307 Sum_probs=30.4
Q ss_pred CCCCcceEEEcCCCCCCCHHHHHHHHhccCCeEEEEEeec
Q 021295 52 KDFKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRD 91 (314)
Q Consensus 52 ~~~~~~~l~V~nLp~~~~e~~l~~~F~~~G~v~~v~i~~~ 91 (314)
+-.++.-||..+|+-.+.||.-.+++...--++.+.|+..
T Consensus 326 EGlDs~~iYpqG~S~tlpee~Q~~lir~IpGLEn~~i~qP 365 (679)
T KOG2311|consen 326 EGLDSDLIYPQGLSNTLPEELQLQLIRSIPGLENAEILQP 365 (679)
T ss_pred cCCCCCcccccccccCCCHHHHHHHHHhccCcccceeecc
Confidence 4456778899999988888877788877766777777654
No 292
>PRK11611 enhanced serine sensitivity protein SseB; Provisional
Probab=33.40 E-value=66 Score=28.57 Aligned_cols=78 Identities=6% Similarity=0.233 Sum_probs=43.0
Q ss_pred CcceEEEcCCCCCCC--HHHHHHHHhccCCeEEEEEe--ecCCCCCcceEEE-EEeCChHHHHHHHHh----cCCeeeCC
Q 021295 55 KTKKIFVGGIPSSVN--EDEFKDFFMQFGDVQEHQIM--RDHSTSRSRGFGF-ITFDTEQAVDDLLAK----GNKLELAG 125 (314)
Q Consensus 55 ~~~~l~V~nLp~~~~--e~~l~~~F~~~G~v~~v~i~--~~~~~g~~rG~af-V~F~~~~~a~~a~~~----l~~~~~~g 125 (314)
....|.|+.+..... -+.|+++|+++-.|++..|+ .+....++. +.+ ++++. +.+++|.. ...+..++
T Consensus 128 ~g~~v~lg~p~~~P~~lv~~L~~lf~~~k~V~rAyL~~~~~~~d~~p~-LLI~le~~~--d~e~ii~~ag~~a~~~l~~d 204 (246)
T PRK11611 128 GGESLLLSEVAEPPAQMIDSLTTLFKTIKPVKRAFLASIKENADAQPN-LLIGIEADG--DIEEIIQAAGSVATDTLPGD 204 (246)
T ss_pred CCCEEEecCCccchHHHHHHHHHHHhhcchHHHHHHHHHhccCCCCCc-eEEEEecCC--CHHHHHHHHhHHHHHhCCCC
Confidence 345666666655433 37889999999888865443 222222232 222 44433 33444443 23344577
Q ss_pred eEEEEeecCC
Q 021295 126 AQVEVKKAEP 135 (314)
Q Consensus 126 r~l~V~~a~~ 135 (314)
..|.|.....
T Consensus 205 ~~IDi~~v~~ 214 (246)
T PRK11611 205 EPIDICQVKE 214 (246)
T ss_pred CceeEEEecC
Confidence 7888777664
No 293
>CHL00030 rpl23 ribosomal protein L23
Probab=33.29 E-value=63 Score=24.04 Aligned_cols=34 Identities=21% Similarity=0.254 Sum_probs=23.9
Q ss_pred eEEEcCCCCCCCHHHHHHHHhcc-C-CeEEEEEeec
Q 021295 58 KIFVGGIPSSVNEDEFKDFFMQF-G-DVQEHQIMRD 91 (314)
Q Consensus 58 ~l~V~nLp~~~~e~~l~~~F~~~-G-~v~~v~i~~~ 91 (314)
..|+--++..++..+|++.++++ + +|+.|..+..
T Consensus 20 n~y~F~V~~~anK~eIK~avE~lf~VkV~~VNt~~~ 55 (93)
T CHL00030 20 NQYTFDVDSGSTKTEIKHWIELFFGVKVIAVNSHRL 55 (93)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHhCCeEEEEEEEEc
Confidence 34555678899999999999874 3 4566665544
No 294
>COG2088 SpoVG Uncharacterized protein, involved in the regulation of septum location [Cell envelope biogenesis, outer membrane]
Probab=33.28 E-value=63 Score=23.68 Aligned_cols=28 Identities=18% Similarity=0.379 Sum_probs=23.0
Q ss_pred CeEEEEEeecCCCCCcceEEEEEeCChH
Q 021295 82 DVQEHQIMRDHSTSRSRGFGFITFDTEQ 109 (314)
Q Consensus 82 ~v~~v~i~~~~~~g~~rG~afV~F~~~~ 109 (314)
+|.+|+|.+-...++.|-++-|+|+++-
T Consensus 2 ~iTdVRirkv~~dgrmkA~vsvT~D~ef 29 (95)
T COG2088 2 EITDVRIRKVDTDGRMKAYVSVTLDNEF 29 (95)
T ss_pred cceeEEEEEecCCCcEEEEEEEEecceE
Confidence 5788888887777889999999998753
No 295
>PRK12448 dihydroxy-acid dehydratase; Provisional
Probab=33.14 E-value=1.7e+02 Score=29.57 Aligned_cols=106 Identities=13% Similarity=0.164 Sum_probs=57.5
Q ss_pred ccEEEEEECCHHHHHHHHHccCccCCcEEEEeecCCCCCCCCCCCCcceEEEcCCCCCCCHHHHHHHHhccCCeEEEEEe
Q 021295 10 RGFGFVTYADPSVVDKVIEDTHIINGKQVEIKRTIPKGAVGSKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIM 89 (314)
Q Consensus 10 kG~aFV~f~~~~~a~~A~~~~~~i~g~~i~v~~~~~~~~~~~~~~~~~~l~V~nLp~~~~e~~l~~~F~~~G~v~~v~i~ 89 (314)
+|=| +.|+++++|.+|+.+...-.+..|-++..-|+.-.-- |+- -.+-..+...|--++|-++
T Consensus 448 ~GpA-~VFdsee~a~~ai~~g~I~~gdVvVIRyeGPkGgPGM-------------pEm---l~~t~aL~g~Glg~~VaLI 510 (615)
T PRK12448 448 TGPA-RVFESQDDAVEAILGGKVKAGDVVVIRYEGPKGGPGM-------------QEM---LYPTSYLKSKGLGKACALI 510 (615)
T ss_pred EEeE-EEECCHHHHHHHHhcCCCCCCeEEEEeCCCCCCCcCH-------------HHH---HHHHHHHHhCCCCCceEEe
Confidence 4444 4599999999999976544555555555444432111 100 0112223333433667777
Q ss_pred ec-CCCCCcceEEEEEeCChHHHHHHHHhc---CC--eeeCCeEEEEee
Q 021295 90 RD-HSTSRSRGFGFITFDTEQAVDDLLAKG---NK--LELAGAQVEVKK 132 (314)
Q Consensus 90 ~~-~~~g~~rG~afV~F~~~~~a~~a~~~l---~~--~~~~gr~l~V~~ 132 (314)
.| |.++.++|++.....-+..+-=.|..+ +- +++..+.|.|..
T Consensus 511 TDGRfSGas~G~~igHVsPEAa~GGpIalV~dGD~I~IDi~~r~L~l~v 559 (615)
T PRK12448 511 TDGRFSGGTSGLSIGHVSPEAASGGAIGLVEDGDIIEIDIPNRSINLLV 559 (615)
T ss_pred cccCcCCcccCCEEEEEChhhccCCcEEEEeCCCEEEEECCCCEEEEee
Confidence 77 778888898776664443332233322 22 334567777753
No 296
>COG4010 Uncharacterized protein conserved in archaea [Function unknown]
Probab=32.84 E-value=1.1e+02 Score=24.71 Aligned_cols=46 Identities=15% Similarity=0.209 Sum_probs=36.1
Q ss_pred CCCCCCCHHHHHHHHhccCCeEEEEEeecCCCCCcceEEEEEeCChHHHHHHHHhc
Q 021295 63 GIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKG 118 (314)
Q Consensus 63 nLp~~~~e~~l~~~F~~~G~v~~v~i~~~~~~g~~rG~afV~F~~~~~a~~a~~~l 118 (314)
.|+..+.++-|.++.+-.|-|.+.. -.| -.+.|-+.+.+.+||+.+
T Consensus 118 ~L~epl~~eRlqDi~E~hgvIiE~~-E~D---------~V~i~Gd~drVk~aLke~ 163 (170)
T COG4010 118 HLREPLAEERLQDIAETHGVIIEFE-EYD---------LVAIYGDSDRVKKALKEI 163 (170)
T ss_pred ecCchhHHHHHHHHHHhhheeEEee-ecc---------EEEEeccHHHHHHHHHHH
Confidence 4777888899999999988877655 222 366789999999999875
No 297
>PF13046 DUF3906: Protein of unknown function (DUF3906)
Probab=32.75 E-value=51 Score=22.67 Aligned_cols=34 Identities=21% Similarity=0.497 Sum_probs=24.2
Q ss_pred CCHHHHHHHHhccCCeEEEEEeecCCCCCcceEEEE
Q 021295 68 VNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFI 103 (314)
Q Consensus 68 ~~e~~l~~~F~~~G~v~~v~i~~~~~~g~~rG~afV 103 (314)
+-|.+|..+|-+-.+|+++.|+..+.-. +|-+||
T Consensus 30 ~~e~eler~fl~~P~v~e~~l~EKKri~--~G~gyV 63 (64)
T PF13046_consen 30 LVEVELERHFLPLPEVKEVALYEKKRIR--KGAGYV 63 (64)
T ss_pred HHHHHhhhhccCCCCceEEEEEEEEeee--CCceeE
Confidence 3467788888888899999998764433 444554
No 298
>PRK13010 purU formyltetrahydrofolate deformylase; Reviewed
Probab=32.43 E-value=1.4e+02 Score=27.08 Aligned_cols=57 Identities=16% Similarity=0.222 Sum_probs=28.1
Q ss_pred EEcCCCCCCCHHHHHHHHhccCCeEEEEEeecCCCCCcceEEEEEeCChHHHHHHHHh
Q 021295 60 FVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAK 117 (314)
Q Consensus 60 ~V~nLp~~~~e~~l~~~F~~~G~v~~v~i~~~~~~g~~rG~afV~F~~~~~a~~a~~~ 117 (314)
++...|..++.++|++.|++.++-..+.+.....+.+ +-.|++.=.+-..+++.+++
T Consensus 57 ~~~~~~~~~~~~~l~~~l~~l~~~l~l~~~i~~~~~~-~kiavl~Sg~g~nl~al~~~ 113 (289)
T PRK13010 57 FHAQSAEAASVDTFRQEFQPVAEKFDMQWAIHPDGQR-PKVVIMVSKFDHCLNDLLYR 113 (289)
T ss_pred EEcCCCCCCCHHHHHHHHHHHHHHhCCeEEEecCCCC-eEEEEEEeCCCccHHHHHHH
Confidence 4444556778889988887654332222222211222 23455444444444444444
No 299
>PRK11589 gcvR glycine cleavage system transcriptional repressor; Provisional
Probab=32.24 E-value=3.1e+02 Score=23.19 Aligned_cols=63 Identities=13% Similarity=0.027 Sum_probs=37.6
Q ss_pred cceEEEcCCCCCCCHHHHHHHHhccC-CeEEEEEeecC--CCCCcceEEEEEeCC-----hHHHHHHHHhc
Q 021295 56 TKKIFVGGIPSSVNEDEFKDFFMQFG-DVQEHQIMRDH--STSRSRGFGFITFDT-----EQAVDDLLAKG 118 (314)
Q Consensus 56 ~~~l~V~nLp~~~~e~~l~~~F~~~G-~v~~v~i~~~~--~~g~~rG~afV~F~~-----~~~a~~a~~~l 118 (314)
+..|.|-..+.-=--.+|-++|.+++ .|+++.-.... .++.+.=.+.++..- .++++++++.+
T Consensus 95 ~~~v~v~G~DrPGIV~~vT~~la~~~iNI~~L~T~~~~a~~~~~~lf~~~~~v~lP~~~~~~~L~~~l~~l 165 (190)
T PRK11589 95 TVWVQVEVADSPHLIERFTALFDSHHMNIAELVSRTQPAEGERPAQLHIQITAHSPASQDAANIEQAFKAL 165 (190)
T ss_pred eEEEEEEECCCCCHHHHHHHHHHHcCCChhheEEeeecCCCCCcccEEEEEEEEcCCCCCHHHHHHHHHHH
Confidence 46777777777667788999998886 46555444332 244333334444432 45566666654
No 300
>smart00195 DSPc Dual specificity phosphatase, catalytic domain.
Probab=32.17 E-value=1.2e+02 Score=23.53 Aligned_cols=70 Identities=16% Similarity=0.291 Sum_probs=33.8
Q ss_pred eEEEcCCCCCCCHHHHHHHHhccCCeEEEEEeecCCCCCcceEEEEEeC--C------hHHHHHHHHhcCCeeeCCeEEE
Q 021295 58 KIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFD--T------EQAVDDLLAKGNKLELAGAQVE 129 (314)
Q Consensus 58 ~l~V~nLp~~~~e~~l~~~F~~~G~v~~v~i~~~~~~g~~rG~afV~F~--~------~~~a~~a~~~l~~~~~~gr~l~ 129 (314)
.|||+++|...+.+.|++. .+..|.. +..........++-++.+. | .+.++++++.++...-.+.+|-
T Consensus 7 ~l~~G~~~~~~~~~~l~~~--gi~~Vi~--l~~~~~~~~~~~~~~~~ipi~D~~~~~~~~~~~~~~~~i~~~~~~~~~Vl 82 (138)
T smart00195 7 HLYLGSYSSALNLALLKKL--GITHVIN--VTNEVPNLNKKGFTYLGVPILDNTETKISPYFPEAVEFIEDAEKKGGKVL 82 (138)
T ss_pred CeEECChhHcCCHHHHHHc--CCCEEEE--ccCCCCCCCCCCCEEEEEECCCCCCCChHHHHHHHHHHHHHHhcCCCeEE
Confidence 5999999987765555543 2222332 2222111123445554443 2 1233445555444444555665
Q ss_pred Ee
Q 021295 130 VK 131 (314)
Q Consensus 130 V~ 131 (314)
|-
T Consensus 83 VH 84 (138)
T smart00195 83 VH 84 (138)
T ss_pred EE
Confidence 54
No 301
>cd00027 BRCT Breast Cancer Suppressor Protein (BRCA1), carboxy-terminal domain. The BRCT domain is found within many DNA damage repair and cell cycle checkpoint proteins. The unique diversity of this domain superfamily allows BRCT modules to interact forming homo/hetero BRCT multimers, BRCT-non-BRCT interactions, and interactions within DNA strand breaks.
Probab=31.64 E-value=1.4e+02 Score=19.11 Aligned_cols=25 Identities=24% Similarity=0.442 Sum_probs=20.4
Q ss_pred eEEEcCCCCCCCHHHHHHHHhccCC
Q 021295 58 KIFVGGIPSSVNEDEFKDFFMQFGD 82 (314)
Q Consensus 58 ~l~V~nLp~~~~e~~l~~~F~~~G~ 82 (314)
.++|.+.....+.++|++++..+|-
T Consensus 3 ~~~i~g~~~~~~~~~l~~~i~~~Gg 27 (72)
T cd00027 3 TFVITGDLPSEERDELKELIEKLGG 27 (72)
T ss_pred EEEEEecCCCcCHHHHHHHHHHcCC
Confidence 5677776668889999999999975
No 302
>smart00650 rADc Ribosomal RNA adenine dimethylases.
Probab=31.59 E-value=2.3e+02 Score=22.96 Aligned_cols=23 Identities=13% Similarity=0.270 Sum_probs=19.2
Q ss_pred ceEEEcCCCCCCCHHHHHHHHhc
Q 021295 57 KKIFVGGIPSSVNEDEFKDFFMQ 79 (314)
Q Consensus 57 ~~l~V~nLp~~~~e~~l~~~F~~ 79 (314)
..+.|.|+|+.++.+.|..+++.
T Consensus 78 ~d~vi~n~Py~~~~~~i~~~l~~ 100 (169)
T smart00650 78 PYKVVGNLPYNISTPILFKLLEE 100 (169)
T ss_pred CCEEEECCCcccHHHHHHHHHhc
Confidence 35678999999999888888875
No 303
>cd04889 ACT_PDH-BS-like C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate. Included in this CD is the C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate, found in Bacillus subtilis (BS) and other Firmicutes, Deinococci, and Bacteroidetes. PDH is the first enzyme in the aromatic amino acid pathway specific for the biosynthesis of tyrosine. This enzyme is feedback inhibited by tyrosine in B. subtilis and other microorganisms. Both phenylalanine and tryptophan have been shown to be inhibitors of this activity in B. subtilis. Bifunctional chorismate mutase-PDH (TyrA) enzymes such as those seen in Escherichia coli do not contain an ACT domain. Also included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem A
Probab=31.46 E-value=1.4e+02 Score=18.99 Aligned_cols=42 Identities=14% Similarity=0.311 Sum_probs=27.9
Q ss_pred HHHHHHHhccC-CeEEEEEeecCCCCCcceEEEEEeCChHHHHHHH
Q 021295 71 DEFKDFFMQFG-DVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLL 115 (314)
Q Consensus 71 ~~l~~~F~~~G-~v~~v~i~~~~~~g~~rG~afV~F~~~~~a~~a~ 115 (314)
.+|.++|.+.+ .|+.+.+.... ..+....+++++.+.|.+++
T Consensus 13 ~~i~~~l~~~~inI~~~~~~~~~---~~~~~~~~~v~~~~~a~~~l 55 (56)
T cd04889 13 AEVTEILAEAGINIKAISIAETR---GEFGILRLIFSDPERAKEVL 55 (56)
T ss_pred HHHHHHHHHcCCCEeeEEEEEcc---CCcEEEEEEECCHHHHHHHh
Confidence 45667776664 57777665542 24567788888888777765
No 304
>COG4232 Thiol:disulfide interchange protein [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]
Probab=31.42 E-value=87 Score=31.28 Aligned_cols=103 Identities=11% Similarity=0.099 Sum_probs=56.9
Q ss_pred ccEEEEEECCHHHHHHHHHccCccCCcEEEEeec----CCCCCCC-----C--CCCCcceEEEcCCCCCCCHHHHHHHHh
Q 021295 10 RGFGFVTYADPSVVDKVIEDTHIINGKQVEIKRT----IPKGAVG-----S--KDFKTKKIFVGGIPSSVNEDEFKDFFM 78 (314)
Q Consensus 10 kG~aFV~f~~~~~a~~A~~~~~~i~g~~i~v~~~----~~~~~~~-----~--~~~~~~~l~V~nLp~~~~e~~l~~~F~ 78 (314)
+.--|..++++++.++++.+... |+|.++.. +.-+..+ + ...+..-+.+-..+++.++.++.++++
T Consensus 452 ~~~~~q~~s~~~~L~~~la~~~~---~pVmlDfyAdWCvtCK~~e~~tfsd~~v~~~~~~~vlLqaDvT~~~p~~~~lLk 528 (569)
T COG4232 452 HGEFWQPISPLAELDQALAEAKA---KPVMLDFYADWCVTCKENEKYTFSDPQVQQALQDVVLLQADVTANDPAITALLK 528 (569)
T ss_pred cchhhhccCCHHHHHHHHHhCCC---CcEEEeeehhHHHHhHhhhhhccCcHHHHHhcCCeEEEEeeecCCCHHHHHHHH
Confidence 33344677777777777774332 45555432 1111100 0 011122233345677778889999999
Q ss_pred ccCCeE-EEEEeecCCCCCcceEEEEEeCChHHHHHHHHh
Q 021295 79 QFGDVQ-EHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAK 117 (314)
Q Consensus 79 ~~G~v~-~v~i~~~~~~g~~rG~afV~F~~~~~a~~a~~~ 117 (314)
+++.+- -..|..+.+...+. +...|.+.+...+.+++
T Consensus 529 ~~~~~G~P~~~ff~~~g~e~~--~l~gf~~a~~~~~~l~~ 566 (569)
T COG4232 529 RLGVFGVPTYLFFGPQGSEPE--ILTGFLTADAFLEHLER 566 (569)
T ss_pred HcCCCCCCEEEEECCCCCcCc--CCcceecHHHHHHHHHH
Confidence 887542 12233333333333 38889999998888876
No 305
>PRK05192 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; Validated
Probab=31.35 E-value=97 Score=31.45 Aligned_cols=40 Identities=20% Similarity=0.441 Sum_probs=34.3
Q ss_pred CCCCcceEEEcCCCCCCCHHHHHHHHhccCCeEEEEEeec
Q 021295 52 KDFKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRD 91 (314)
Q Consensus 52 ~~~~~~~l~V~nLp~~~~e~~l~~~F~~~G~v~~v~i~~~ 91 (314)
+...+..+|+-+|+.++.++.=.++|...--++.++|++.
T Consensus 297 eg~~~~~~y~~G~stslp~~~Q~~~~r~ipGle~a~i~r~ 336 (618)
T PRK05192 297 EGLDTNEVYPNGISTSLPEDVQLEMLRSIPGLENAEILRP 336 (618)
T ss_pred CCCCCCEEeccCccCCCCHHHHHHHHhcCcCccceeEeec
Confidence 4556789999999999999999999998877888888764
No 306
>PRK08655 prephenate dehydrogenase; Provisional
Probab=31.25 E-value=3.2e+02 Score=26.35 Aligned_cols=54 Identities=15% Similarity=0.207 Sum_probs=33.8
Q ss_pred CCCCCCHHHHHHHHhccCCeEEEEEeecCC----CCCcceEEE-EEeCChHHHHHHHHh
Q 021295 64 IPSSVNEDEFKDFFMQFGDVQEHQIMRDHS----TSRSRGFGF-ITFDTEQAVDDLLAK 117 (314)
Q Consensus 64 Lp~~~~e~~l~~~F~~~G~v~~v~i~~~~~----~g~~rG~af-V~F~~~~~a~~a~~~ 117 (314)
+|.+++.++|.+.+.+...|++|.|+.... ....+-.+| ++|.+.++++.+.+.
T Consensus 369 v~~~~~~~~i~~~i~~~~~l~~v~~fDvY~g~~i~~g~kSla~r~~~~~~~~~~~~~~~ 427 (437)
T PRK08655 369 FPKGADPEVILDLLDNLKHVFDIEIIDVYSGKQIEEGYLSVTFRITVFGKEDLENVEEI 427 (437)
T ss_pred ECCCCCHHHHHHHHhcCCCcceEEEEEEeCCCCCCCCceEEEEEEEEEccccHHHHHHH
Confidence 789999999999998765566666553321 111344554 566666666555553
No 307
>PF05189 RTC_insert: RNA 3'-terminal phosphate cyclase (RTC), insert domain; InterPro: IPR013796 RNA cyclases are a family of RNA-modifying enzymes that are conserved in eukaryotes, bacteria and archaea. RNA 3'-terminal phosphate cyclase (6.5.1.4 from EC) [, ] catalyses the conversion of 3'-phosphate to a 2',3'-cyclic phosphodiester at the end of RNA. ATP + RNA 3'-terminal-phosphate = AMP + diphosphate + RNA terminal-2',3'-cyclic-phosphate These enzymes might be responsible for production of the cyclic phosphate RNA ends that are known to be required by many RNA ligases in both prokaryotes and eukaryotes. RNA cyclase is a protein of from 36 to 42 kDa. The best conserved region is a glycine-rich stretch of residues located in the central part of the sequence and which is reminiscent of various ATP, GTP or AMP glycine-rich loops. The crystal structure of RNA 3'-terminal phosphate cyclase shows that each molecule consists of two domains. The larger domain contains three repeats of a folding unit comprising two parallel alpha helices and a four-stranded beta sheet; this fold was previously identified in translation initiation factor 3 (IF3). The large domain is similar to one of the two domains of 5-enolpyruvylshikimate-3-phosphate synthase and UDP-N-acetylglucosamine enolpyruvyl transferase. The smaller domain uses a similar secondary structure element with different topology, observed in many other proteins such as thioredoxin []. Although the active site of this enzyme could not be unambiguously assigned, it can be mapped to a region surrounding His309, an adenylate acceptor, in which a number of amino acids are highly conserved in the enzyme from different sources []. This entry contains the insert-domain of approximately 100 amino acids.; PDB: 3TV1_B 3KGD_D 1QMI_D 1QMH_B 3TUX_A 3TUT_A 3TW3_A 3PQV_A.
Probab=31.09 E-value=85 Score=23.46 Aligned_cols=47 Identities=26% Similarity=0.307 Sum_probs=26.1
Q ss_pred eEEEcCCCCCCCHHHHH---HHHhccCCeEEEEE--eecCCCCCcceEEEEE
Q 021295 58 KIFVGGIPSSVNEDEFK---DFFMQFGDVQEHQI--MRDHSTSRSRGFGFIT 104 (314)
Q Consensus 58 ~l~V~nLp~~~~e~~l~---~~F~~~G~v~~v~i--~~~~~~g~~rG~afV~ 104 (314)
..|+.+||.++.+.++. ++|.++.+-..|.+ ..........|++.+.
T Consensus 12 ~a~~a~lp~~va~R~~~~a~~~L~~~~~~v~i~~d~~~~~~~~~~~G~gi~l 63 (103)
T PF05189_consen 12 IAFVAGLPSSVAERMANAARKRLNWYGPDVEIETDYRESDDSAFGPGSGISL 63 (103)
T ss_dssp EEEEESS-CHHHHHHHHHHHHHHCTTCSEEEEEEEEE-CCCCGCSSEEEEEE
T ss_pred EEEEcCCCHHHHHHHHHHHHHHhhhhCCCeEEEEecccCccCCCCCceEEEE
Confidence 45889999999887775 44545443333333 2233455566665543
No 308
>PF00521 DNA_topoisoIV: DNA gyrase/topoisomerase IV, subunit A; InterPro: IPR002205 DNA topoisomerases regulate the number of topological links between two DNA strands (i.e. change the number of superhelical turns) by catalysing transient single- or double-strand breaks, crossing the strands through one another, then resealing the breaks []. These enzymes have several functions: to remove DNA supercoils during transcription and DNA replication; for strand breakage during recombination; for chromosome condensation; and to disentangle intertwined DNA during mitosis [, ]. DNA topoisomerases are divided into two classes: type I enzymes (5.99.1.2 from EC; topoisomerases I, III and V) break single-strand DNA, and type II enzymes (5.99.1.3 from EC; topoisomerases II, IV and VI) break double-strand DNA []. Type II topoisomerases are ATP-dependent enzymes, and can be subdivided according to their structure and reaction mechanisms: type IIA (topoisomerase II or gyrase, and topoisomerase IV) and type IIB (topoisomerase VI). These enzymes are responsible for relaxing supercoiled DNA as well as for introducing both negative and positive supercoils []. Type IIA topoisomerases together manage chromosome integrity and topology in cells. Topoisomerase II (called gyrase in bacteria) primarily introduces negative supercoils into DNA. In bacteria, topoisomerase II consists of two polypeptide subunits, gyrA and gyrB, which form a heterotetramer: (BA)2. In most eukaryotes, topoisomerase II consists of a single polypeptide, where the N- and C-terminal regions correspond to gyrB and gyrA, respectively; this topoisomerase II forms a homodimer that is equivalent to the bacterial heterotetramer. There are four functional domains in topoisomerase II: domain 1 (N-terminal of gyrB) is an ATPase, domain 2 (C-terminal of gyrB) is responsible for subunit interactions (differs between eukaryotic and bacterial enzymes), domain 3 (N-terminal of gyrA) is responsible for the breaking-rejoining function through its capacity to form protein-DNA bridges, and domain 4 (C-terminal of gyrA) is able to non-specifically bind DNA []. Topoisomerase IV primarily decatenates DNA and relaxes positive supercoils, which is important in bacteria, where the circular chromosome becomes catenated, or linked, during replication []. Topoisomerase IV consists of two polypeptide subunits, parE and parC, where parC is homologous to gyrA and parE is homologous to gyrB. This entry represents subunit A (gyrA and parC) of bacterial gyrase and topoisomerase IV, and the equivalent C-terminal region in eukaryotic topoisomerase II composed of a single polypeptide. This subunit has DNA-binding capacity. More information about this protein can be found at Protein of the Month: DNA Topoisomerase [].; GO: 0003677 DNA binding, 0003918 DNA topoisomerase (ATP-hydrolyzing) activity, 0005524 ATP binding, 0006265 DNA topological change, 0005694 chromosome; PDB: 1ZVU_A 1AB4_A 1X75_A 3NUH_A 1BJT_A 1BGW_A 2RGR_A 3KSB_B 3FOE_B 2NOV_C ....
Probab=30.76 E-value=77 Score=30.52 Aligned_cols=57 Identities=18% Similarity=0.366 Sum_probs=33.7
Q ss_pred ceEEEcCCCCCCCHHHHHHHHhcc---CCeEEEEEeecCCCCCcceEEE-EEeCChHHHHHHHHh
Q 021295 57 KKIFVGGIPSSVNEDEFKDFFMQF---GDVQEHQIMRDHSTSRSRGFGF-ITFDTEQAVDDLLAK 117 (314)
Q Consensus 57 ~~l~V~nLp~~~~e~~l~~~F~~~---G~v~~v~i~~~~~~g~~rG~af-V~F~~~~~a~~a~~~ 117 (314)
++|.|..||+.+..+++++.+.+. ++|+ |.=++|. +.+ ++-| |+++...++++.++.
T Consensus 217 ~~i~ITELP~~~~t~~~~e~i~~l~~~~~i~-I~d~~D~-Sd~--~v~ivI~lk~~~~~~~~~~~ 277 (426)
T PF00521_consen 217 NTIVITELPYGVWTEKYKEKIEELVEDKKIK-ISDYRDE-SDR--GVRIVIELKRGADPEKILEG 277 (426)
T ss_dssp EEEEEEE--TT--HHHHHHHHHHHHHTTSST-EEEEEE--BBT--BS-EEEEESTTSHHHHHHHH
T ss_pred cEEEEEeCCccccHHHHHHHHHHHhccCcch-hhHHHhc-CCC--ceeEEEEecCCccHHHHHHH
Confidence 699999999999888888776543 5677 6666665 544 4544 566665445555443
No 309
>CHL00128 psbW photosystem II protein W; Reviewed
Probab=30.33 E-value=1.1e+02 Score=23.59 Aligned_cols=30 Identities=17% Similarity=0.338 Sum_probs=24.3
Q ss_pred eEEEEEeecCCCCCcceEEEEEeCChHHHHHH
Q 021295 83 VQEHQIMRDHSTSRSRGFGFITFDTEQAVDDL 114 (314)
Q Consensus 83 v~~v~i~~~~~~g~~rG~afV~F~~~~~a~~a 114 (314)
|.+|+|.+.++. ..+.|+..|+++.++++.
T Consensus 15 ip~VrLtRsrdg--~~g~a~f~F~~p~al~~~ 44 (113)
T CHL00128 15 IPDVRLTRSRDG--STGTATFRFKNPNILDKS 44 (113)
T ss_pred CCceEEEEccCC--CceEEEEEECCchhhhhc
Confidence 667889888754 578999999999987764
No 310
>COG5470 Uncharacterized conserved protein [Function unknown]
Probab=30.02 E-value=1.1e+02 Score=22.84 Aligned_cols=43 Identities=21% Similarity=0.230 Sum_probs=25.1
Q ss_pred HHHHHHhccCC--eE---EEEEeecCCCCCcceEEEEEeCChHHHHHHHH
Q 021295 72 EFKDFFMQFGD--VQ---EHQIMRDHSTSRSRGFGFITFDTEQAVDDLLA 116 (314)
Q Consensus 72 ~l~~~F~~~G~--v~---~v~i~~~~~~g~~rG~afV~F~~~~~a~~a~~ 116 (314)
.+...|++||- +. ++..+.. +..+.-...|||+|.+.|..|..
T Consensus 24 ~~~~a~~~~Ggr~LvRGG~v~~lEG--~w~ptr~vviEFps~~~ar~~y~ 71 (96)
T COG5470 24 KAKPAIEKFGGRYLVRGGEVETLEG--EWRPTRNVVIEFPSLEAARDCYN 71 (96)
T ss_pred HhHHHHHHhCCeeEeeCCCeeeccC--CCCcccEEEEEcCCHHHHHHHhc
Confidence 34566777752 11 1222222 12234479999999998887654
No 311
>PF08156 NOP5NT: NOP5NT (NUC127) domain; InterPro: IPR012974 This N-terminal domain is found in RNA-binding proteins of the NOP5 family [].
Probab=30.00 E-value=16 Score=25.36 Aligned_cols=37 Identities=11% Similarity=0.132 Sum_probs=23.9
Q ss_pred HHHHHHHhccCCeEE-EEEeecCCCCCcceEEEEEeCChHHHHHHHHhc
Q 021295 71 DEFKDFFMQFGDVQE-HQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKG 118 (314)
Q Consensus 71 ~~l~~~F~~~G~v~~-v~i~~~~~~g~~rG~afV~F~~~~~a~~a~~~l 118 (314)
++|.+.|..+....+ |++ .+|..|++.++|.+++..+
T Consensus 27 ~~v~~~~~~~~~f~k~vkL-----------~aF~pF~s~~~ALe~~~ai 64 (67)
T PF08156_consen 27 EEVQKSFSDPEKFSKIVKL-----------KAFSPFKSAEEALENANAI 64 (67)
T ss_pred HHHHHHHcCHHHHhhhhhh-----------hhccCCCCHHHHHHHHHHh
Confidence 567777665433322 122 5899999998888877664
No 312
>cd06410 PB1_UP2 Uncharacterized protein 2. The PB1 domain is a modular domain mediating specific protein-protein interaction which play a role in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions.
Probab=29.97 E-value=2.4e+02 Score=21.10 Aligned_cols=56 Identities=7% Similarity=0.142 Sum_probs=33.6
Q ss_pred CCCCCCHHHHHHHHhccCCeEE-EEEeecCCCCCcceEEEEEeCChHHHHHHHHhcCCe
Q 021295 64 IPSSVNEDEFKDFFMQFGDVQE-HQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKL 121 (314)
Q Consensus 64 Lp~~~~e~~l~~~F~~~G~v~~-v~i~~~~~~g~~rG~afV~F~~~~~a~~a~~~l~~~ 121 (314)
++.+++..||...+++.=.+.. +.|...-. .... -+.|..++.++++..++..+.+
T Consensus 29 V~r~~s~~el~~kl~~~~~~~~~~~lky~Lp-~edl-d~Lisv~~DeDl~~M~~e~~~~ 85 (97)
T cd06410 29 VDRSISFKELVSKLSELFGAGVVVTLKYQLP-DEDL-DALISVSNDEDLKNMMEEYDRL 85 (97)
T ss_pred EcCCCCHHHHHHHHHHHhCCCCceEEEEEcC-CCCc-ceeEEecCcHHHHHHHHhhccc
Confidence 5677888888876654322221 22221111 1122 2799999999999999886544
No 313
>PRK06131 dihydroxy-acid dehydratase; Validated
Probab=29.95 E-value=2.2e+02 Score=28.59 Aligned_cols=107 Identities=14% Similarity=0.241 Sum_probs=57.5
Q ss_pred cccEEEEEECCHHHHHHHHHccCc-c-CCcEEEEeecCCCCCCCCCCCCcceEEEcCCCCCCCHHHHHHHHhccCCeEEE
Q 021295 9 PRGFGFVTYADPSVVDKVIEDTHI-I-NGKQVEIKRTIPKGAVGSKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEH 86 (314)
Q Consensus 9 ~kG~aFV~f~~~~~a~~A~~~~~~-i-~g~~i~v~~~~~~~~~~~~~~~~~~l~V~nLp~~~~e~~l~~~F~~~G~v~~v 86 (314)
.+|-|. .|+++++|.+|+.+... | .+.-|-++..-|+...--.+ ...|. .-..+...|- ++|
T Consensus 400 ~~G~A~-VF~see~a~~ai~~g~i~i~~gdVvVIRyeGPkGgPGMpE--~~mL~------------~t~al~g~Gl-~~v 463 (571)
T PRK06131 400 HEGRAV-VFEGYEDYKARIDDPDLDVDEDTVLVLRNAGPKGYPGMPE--VGNMP------------IPKKLLRQGV-KDM 463 (571)
T ss_pred EEeeeE-EECCHHHHHHHHhCCCcCCCCCeEEEEeCCCCCCCCCCcc--ccccc------------cHHHHHhCCC-cee
Confidence 445554 59999999999996553 2 45555555555553221111 00000 1122334454 777
Q ss_pred EEeec-CCCCCcceEEEEEeCChHHHHHHHHhc---CC--eeeCCeEEEEe
Q 021295 87 QIMRD-HSTSRSRGFGFITFDTEQAVDDLLAKG---NK--LELAGAQVEVK 131 (314)
Q Consensus 87 ~i~~~-~~~g~~rG~afV~F~~~~~a~~a~~~l---~~--~~~~gr~l~V~ 131 (314)
-++.| |.++-++|++.....-+..+-=.|..+ +- +++..+.|.+.
T Consensus 464 aLITDGRfSGas~G~~igHVsPEAa~GGpIalV~dGD~I~IDi~~r~l~l~ 514 (571)
T PRK06131 464 VRISDARMSGTAYGTVVLHVAPEAAAGGPLALVRTGDRIRLDVPARRLDLL 514 (571)
T ss_pred EEeccCCcCcccCCCeEEEEChhhccCCcEEEEeCCCEEEEecCCCEEEEe
Confidence 77776 778888997777765443332223322 22 33456677664
No 314
>KOG4840 consensus Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]
Probab=29.87 E-value=99 Score=27.24 Aligned_cols=68 Identities=16% Similarity=0.296 Sum_probs=36.4
Q ss_pred CCcceEEEcCCCCCCC----HHHHHHHHhccC-CeEEEEEeecCCCCCcceEEEEEe-CChHHHHHHHHhcCCeeeCCe
Q 021295 54 FKTKKIFVGGIPSSVN----EDEFKDFFMQFG-DVQEHQIMRDHSTSRSRGFGFITF-DTEQAVDDLLAKGNKLELAGA 126 (314)
Q Consensus 54 ~~~~~l~V~nLp~~~~----e~~l~~~F~~~G-~v~~v~i~~~~~~g~~rG~afV~F-~~~~~a~~a~~~l~~~~~~gr 126 (314)
...+.|||+.|-..+- .++|...+.+.. .|+.+.+. ....||..-.. .+.|+++++|+.+..+.+.-.
T Consensus 35 ~~~~vvfiGGLgdgLl~~~y~~~L~~~lde~~wslVq~q~~-----Ssy~G~Gt~slk~D~edl~~l~~Hi~~~~fSt~ 108 (299)
T KOG4840|consen 35 ESVKVVFIGGLGDGLLICLYTTMLNRYLDENSWSLVQPQLR-----SSYNGYGTFSLKDDVEDLKCLLEHIQLCGFSTD 108 (299)
T ss_pred eEEEEEEEcccCCCccccccHHHHHHHHhhccceeeeeecc-----ccccccccccccccHHHHHHHHHHhhccCcccc
Confidence 3467899999887643 345554444432 12222221 12344554333 456788888886655544333
No 315
>PF08544 GHMP_kinases_C: GHMP kinases C terminal ; InterPro: IPR013750 This domain is found in homoserine kinases (2.7.1.39 from EC), galactokinases (2.7.1.6 from EC) and mevalonate kinases (2.7.1.36 from EC). These kinases make up the GHMP kinase superfamily of ATP-dependent enzymes []. These enzymes are involved in the biosynthesis of isoprenes and amino acids as well as in carbohydrate metabolism. The C-terminal domain of homoserine kinase has a central alpha-beta plait fold and an insertion of four helices, which, together with the N-terminal fold, create a novel nucleotide binding fold [].; PDB: 2R3V_C 4EMD_A 4DXL_A 4ED4_A 2GS8_A 1K47_E 3GON_A 3K17_B 1PIE_A 2AJ4_A ....
Probab=29.66 E-value=1.9e+02 Score=20.12 Aligned_cols=43 Identities=14% Similarity=0.097 Sum_probs=28.5
Q ss_pred HHHHHHHhccCCeEEEEEeecCCCCCcceEEEEEeCChHHHHHHHHhc
Q 021295 71 DEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKG 118 (314)
Q Consensus 71 ~~l~~~F~~~G~v~~v~i~~~~~~g~~rG~afV~F~~~~~a~~a~~~l 118 (314)
++|++++++++ +.-+.|.-. -.-.+.|+.+++.+.++++++.+
T Consensus 37 ~~~~~~~~~~G-a~~~~~sGs----G~G~~v~~l~~~~~~~~~v~~~l 79 (85)
T PF08544_consen 37 DELKEAAEENG-ALGAKMSGS----GGGPTVFALCKDEDDAERVAEAL 79 (85)
T ss_dssp HHHHHHHHHTT-ESEEEEETT----SSSSEEEEEESSHHHHHHHHHHH
T ss_pred HHHHHHHHHCC-CCceecCCC----CCCCeEEEEECCHHHHHHHHHHH
Confidence 56777788888 444444311 01347788888988888888765
No 316
>PRK13011 formyltetrahydrofolate deformylase; Reviewed
Probab=29.55 E-value=1.3e+02 Score=27.38 Aligned_cols=56 Identities=14% Similarity=0.119 Sum_probs=32.0
Q ss_pred cCCCCCCCHHHHHHHHhccCCeEEEEEeecCCCCCcceEEEEEeCChHHHHHHHHhc
Q 021295 62 GGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKG 118 (314)
Q Consensus 62 ~nLp~~~~e~~l~~~F~~~G~v~~v~i~~~~~~g~~rG~afV~F~~~~~a~~a~~~l 118 (314)
-.+|..++.++|++.|++..+-..+.+.....+.+. -.|++.-.+-..+++.+++.
T Consensus 55 ~~~p~~~~~~~L~~~L~~l~~~l~l~i~i~~~~~~~-ri~vl~Sg~g~nl~al~~~~ 110 (286)
T PRK13011 55 FHSEEGLDEDALRAGFAPIAARFGMQWELHDPAARP-KVLIMVSKFDHCLNDLLYRW 110 (286)
T ss_pred EecCCCCCHHHHHHHHHHHHHHhCcEEEEeecccCc-eEEEEEcCCcccHHHHHHHH
Confidence 347888889999999987754332222222222222 35665555555566666543
No 317
>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed
Probab=29.36 E-value=1.6e+02 Score=26.29 Aligned_cols=23 Identities=9% Similarity=0.173 Sum_probs=19.4
Q ss_pred ceEEEcCCCCCCCHHHHHHHHhc
Q 021295 57 KKIFVGGIPSSVNEDEFKDFFMQ 79 (314)
Q Consensus 57 ~~l~V~nLp~~~~e~~l~~~F~~ 79 (314)
..+.|+|||+.++.+-|.+++..
T Consensus 106 ~~~vv~NlPY~iss~ii~~~l~~ 128 (272)
T PRK00274 106 PLKVVANLPYNITTPLLFHLLEE 128 (272)
T ss_pred cceEEEeCCccchHHHHHHHHhc
Confidence 46789999999998888888864
No 318
>PF10141 ssDNA-exonuc_C: Single-strand DNA-specific exonuclease, C terminal domain; InterPro: IPR018779 This entry represents a domain found at the C terminus of a set of single-stranded DNA-specific exonucleases, including RecJ. Its function has not, as yet, been determined.
Probab=29.32 E-value=3e+02 Score=23.23 Aligned_cols=58 Identities=16% Similarity=0.202 Sum_probs=38.2
Q ss_pred CCCCcceEEEcCCCCCCCHHHHHHHHhccCCeEEEEEeecCCCCCcceEEEEEeCChHHHHHHHH
Q 021295 52 KDFKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLA 116 (314)
Q Consensus 52 ~~~~~~~l~V~nLp~~~~e~~l~~~F~~~G~v~~v~i~~~~~~g~~rG~afV~F~~~~~a~~a~~ 116 (314)
.......|.|-.||.+ .++|++++ +...+++|.++...... .-|..+.+.+...++.+
T Consensus 48 ~~~~~~~lVl~D~P~~--~~~l~~~l-~~~~~~~Iyl~f~~~~~----~y~~~~P~Re~F~~~Y~ 105 (195)
T PF10141_consen 48 EDESYDNLVLLDLPPS--LEQLKELL-QQQQPERIYLLFYQQDS----AYFEGMPTREQFKKLYK 105 (195)
T ss_pred ccccCCEEEEEeCCCC--HHHHHHHH-HhCCcceEEEEECCccc----hhhcCCCCHHHHHHHHH
Confidence 3456678888889876 78899999 46678888877643221 22555666665555443
No 319
>PF12623 Hen1_L: RNA repair, ligase-Pnkp-associating, region of Hen1; InterPro: IPR024740 This entry represents the N-terminal domain of the bacterial Hen1 protein, which is a 3' terminal RNA ribose 2'-O-methyltransferase that is involved in bacterial RNA repair []. Hen1 forms a heterotetramer with Pnkp. The heterotetramer has been shown to repair transfer RNAs cleaved by ribotoxins in vitro []. The N-terminal domain of Hen1 contributes to the ligase activity of the heterotetramer.
Probab=29.28 E-value=1.4e+02 Score=26.20 Aligned_cols=62 Identities=16% Similarity=0.186 Sum_probs=45.1
Q ss_pred cceEEEcCCCCCCCHHHHHHHHhccCCeEEE-EEeecCC---CCCcceEEEEEeCChHHHHHHHHhc
Q 021295 56 TKKIFVGGIPSSVNEDEFKDFFMQFGDVQEH-QIMRDHS---TSRSRGFGFITFDTEQAVDDLLAKG 118 (314)
Q Consensus 56 ~~~l~V~nLp~~~~e~~l~~~F~~~G~v~~v-~i~~~~~---~g~~rG~afV~F~~~~~a~~a~~~l 118 (314)
.-+|-|.-||-.-.++-++++|+..|--+.+ .+..|.. -+.++ |..|+.+-...++.||..|
T Consensus 118 pL~v~~p~lp~rGg~~l~~rLFePLGw~V~a~~~~Ld~~fP~WG~S~-y~~l~L~g~~rl~daL~HL 183 (245)
T PF12623_consen 118 PLEVRLPALPCRGGEELVRRLFEPLGWTVTAEPVPLDEQFPEWGDSR-YVDLTLTGTVRLADALNHL 183 (245)
T ss_pred ceEEEeeeeecCCcHHHHHHhhcCcCceEEeEeccCCccCccccCCc-ceEEEEeeeEEHHHHHhhh
Confidence 4578888899888999999999999954443 4444432 23344 7888888888888888764
No 320
>smart00434 TOP4c DNA Topoisomerase IV. Bacterial DNA topoisomerase IV, GyrA, ParC
Probab=28.66 E-value=1.1e+02 Score=29.64 Aligned_cols=59 Identities=17% Similarity=0.264 Sum_probs=35.4
Q ss_pred ceEEEcCCCCCCCHHHHHHHHhc---cCCeEEEEEeecCCCCCcceEEE-EEeCChHHHHHHHH
Q 021295 57 KKIFVGGIPSSVNEDEFKDFFMQ---FGDVQEHQIMRDHSTSRSRGFGF-ITFDTEQAVDDLLA 116 (314)
Q Consensus 57 ~~l~V~nLp~~~~e~~l~~~F~~---~G~v~~v~i~~~~~~g~~rG~af-V~F~~~~~a~~a~~ 116 (314)
++|.|..||+.+..++|++.+.+ -.+|+.|.-++|..+. ..++-| |+++....++..++
T Consensus 233 ~~ivItElP~~~~~~~~~e~I~~lv~~~ki~~i~~~~des~~-~~~vrivI~lk~~~~~~~~~~ 295 (445)
T smart00434 233 NTIVITELPYQVNKAKLIEKIAELVKDKKIEGIIDVRDESHD-RTGVRIVIELKRGAMAEVVLN 295 (445)
T ss_pred ceEEEEeCCCcccHHHHHHHHHHHHhcCCCCcceehhhccCC-CCceEEEEEECCCcCHHHHHH
Confidence 68999999999999888877654 2445444444442212 234554 56655444444444
No 321
>KOG1888 consensus Putative phosphoinositide phosphatase [Lipid transport and metabolism]
Probab=28.52 E-value=1.6e+02 Score=30.70 Aligned_cols=71 Identities=6% Similarity=0.124 Sum_probs=45.6
Q ss_pred CCcceEEEcCCCC--CCCHHHHHHHHhccC-CeEEEEEeecCCCCCcceEEEEEeCChHHHHHHHHhcCCeeeCCeEEEE
Q 021295 54 FKTKKIFVGGIPS--SVNEDEFKDFFMQFG-DVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEV 130 (314)
Q Consensus 54 ~~~~~l~V~nLp~--~~~e~~l~~~F~~~G-~v~~v~i~~~~~~g~~rG~afV~F~~~~~a~~a~~~l~~~~~~gr~l~V 130 (314)
.+...|+|....+ +++...+.++|.+|| +|+-+.|++.++..+.. ---.++.++||.-||.....-++|+.
T Consensus 307 ~~KP~I~l~~~DP~y~~a~lHF~~L~~RYG~PIiilNLIKt~ekr~~E------~IL~~eF~~ai~yLNqflp~e~rl~~ 380 (868)
T KOG1888|consen 307 VPKPDIVLDKRDPFYETAALHFDNLVQRYGNPIIILNLIKTNEKRPRE------SILREEFENAIDYLNQFLPPENRLKY 380 (868)
T ss_pred CCCCCeEEeccCCccchHHHHHHHHHHhcCCcEEEEEeeccccCCchh------HHHHHHHHHHHHHHhccCCCcceeee
Confidence 3444677766554 678888999999998 56667777665433221 11246777888888866655555543
No 322
>cd04909 ACT_PDH-BS C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH). The C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate, found in Bacillus subtilis (BS) and other Firmicutes, Deinococci, and Bacteroidetes. PDH is the first enzyme in the aromatic amino acid pathway specific for the biosynthesis of tyrosine. This enzyme is feedback-inhibited by tyrosine in B. subtilis and other microorganisms. Both phenylalanine and tryptophan have been shown to be inhibitors of this activity in B. subtilis. Bifunctional chorismate mutase-PDH (TyrA) enzymes such as those seen in Escherichia coli do not contain an ACT domain. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=28.49 E-value=1.8e+02 Score=19.32 Aligned_cols=48 Identities=15% Similarity=0.135 Sum_probs=28.3
Q ss_pred CHHHHHHHHhccC-CeEEEEEeecCCCCCcceEEEEEeCChHHHHHHHHhc
Q 021295 69 NEDEFKDFFMQFG-DVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKG 118 (314)
Q Consensus 69 ~e~~l~~~F~~~G-~v~~v~i~~~~~~g~~rG~afV~F~~~~~a~~a~~~l 118 (314)
.-.+|.++|.+++ .|..+.+...+.. ......|+++..++++++++.|
T Consensus 14 ~L~~l~~~l~~~~i~i~~~~~~~~~~~--~~~~~~i~v~~~~~~~~~~~~L 62 (69)
T cd04909 14 VIAEVTQILGDAGISIKNIEILEIREG--IGGILRISFKTQEDRERAKEIL 62 (69)
T ss_pred HHHHHHHHHHHcCCCceeeEeEEeecC--CcEEEEEEECCHHHHHHHHHHH
Confidence 3467888888876 4666655443211 2445667776655555555544
No 323
>PRK11558 putative ssRNA endonuclease; Provisional
Probab=28.41 E-value=1.8e+02 Score=21.83 Aligned_cols=50 Identities=16% Similarity=0.272 Sum_probs=29.7
Q ss_pred cceEEEcCCCCCCCHHHHHHHHhccCCeEEEEEeecCCCCCcceEEEEEeCCh
Q 021295 56 TKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTE 108 (314)
Q Consensus 56 ~~~l~V~nLp~~~~e~~l~~~F~~~G~v~~v~i~~~~~~g~~rG~afV~F~~~ 108 (314)
..-|||++++..+.|.-.+.+-+.+.+=.-+-+..+ + ...||+|.++-+.
T Consensus 27 ~~GVyVg~~S~rVRd~lW~~v~~~~~~G~avmv~~~--~-~eqG~~~~t~G~~ 76 (97)
T PRK11558 27 RAGVYVGDVSRRIREMIWQQVTQLAEEGNVVMAWAT--N-TESGFEFQTFGEN 76 (97)
T ss_pred CCCcEEcCCCHHHHHHHHHHHHHhCCCCcEEEEEcC--C-CCCCcEEEecCCC
Confidence 356999999988877655555554433222222233 2 2338999887664
No 324
>PF09707 Cas_Cas2CT1978: CRISPR-associated protein (Cas_Cas2CT1978); InterPro: IPR010152 Clustered Regularly Interspaced Short Palindromic Repeats (CRISPR) are a family of DNA direct repeats separated by regularly sized non-repetitive spacer sequences that are found in most bacterial and archaeal genomes []. CRISPRs appear to provide acquired resistance against bacteriophages, possibly acting with an RNA interference-like mechanism to inhibit gene functions of invasive DNA elements [, ]. Differences in the number and type of spacers between CRISPR repeats correlate with phage sensitivity. It is thought that following phage infection, bacteria integrate new spacers derived from phage genomic sequences, and that the removal or addition of particular spacers modifies the phage-resistance phenotype of the cell. Therefore, the specificity of CRISPRs may be determined by spacer-phage sequence similarity. In addition, there are many protein families known as CRISPR-associated sequences (Cas), which are encoded in the vicinity of CRISPR loci []. CRISPR/cas gene regions can be quite large, with up to 20 different, tandem-arranged cas genes next to a CRISPR cluster or filling the region between two repeat clusters. Cas genes and CRISPRs are found on mobile genetic elements such as plasmids, and have undergone extensive horizontal transfer. Cas proteins are thought to be involved in the propagation and functioning of CRISPRs. Some Cas proteins show similarity to helicases and repair proteins, although the functions of most are unknown. Cas families can be divided into subtypes according to operon organisation and phylogeny. This entry represents a minor branch of the Cas2 family of CRISPR-associated protein which are found in IPR003799 from INTERPRO. Cas2 is one of four protein families (Cas1 to Cas4) that are associated with CRISPR elements and always occur near a repeat cluster, usually in the order cas3-cas4-cas1-cas2. The function of Cas2 (and Cas1) is unknown. Cas3 proteins appear to be helicases while Cas4 proteins resemble RecB-type exonucleases, suggesting that these genes are involved in DNA metabolism or gene expression [].
Probab=27.97 E-value=1.2e+02 Score=22.20 Aligned_cols=47 Identities=23% Similarity=0.441 Sum_probs=31.0
Q ss_pred cceEEEcCCCCCCCHHHHHHHHhccCCeEEEEEeecCCCCCcceEEEEEe
Q 021295 56 TKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITF 105 (314)
Q Consensus 56 ~~~l~V~nLp~~~~e~~l~~~F~~~G~v~~v~i~~~~~~g~~rG~afV~F 105 (314)
..-|||++++..+.|.-.+.+.+...+=.-+-+..+. + ..||+|-+.
T Consensus 25 ~~GVyVg~~s~rVRe~lW~~v~~~~~~G~a~m~~~~~-n--eqG~~~~t~ 71 (86)
T PF09707_consen 25 RPGVYVGNVSARVRERLWERVTEWIGDGSAVMVWSDN-N--EQGFDFRTL 71 (86)
T ss_pred CCCcEEcCCCHHHHHHHHHHHHhhCCCccEEEEEccC-C--CCCEEEEEe
Confidence 4569999999998887777776654333333333332 2 577888877
No 325
>PF05336 DUF718: Domain of unknown function (DUF718); InterPro: IPR008000 Mutarotases are enzymes which interconvert the alpha and beta stereoisomers of monosaccharides, enhancing the rate of their metabolism. Proteins in this entry are homologues of the rhamnose mutarotase YiiL (P32156 from SWISSPROT) from Escherichia coli, and are often encoded in rhamnose utilisation operons. YiiL is an enzyme which interconverts the alpha and beta stereoisomers of the pyranose form of L-rhamnose []. It is not required for growth on rhamnose, but allows cells to utilise this carbon source more efficiently [].The structure of YiiL is distinct from other mutarotases, forming an asymmetric dimmer stabilised by an intermolecular beta-sheet, hydrophobic interactions and a salt bridge [].; GO: 0016857 racemase and epimerase activity, acting on carbohydrates and derivatives, 0019299 rhamnose metabolic process, 0005737 cytoplasm; PDB: 2QLX_A 2QLW_B 1X8D_B.
Probab=27.69 E-value=1.8e+02 Score=21.93 Aligned_cols=44 Identities=27% Similarity=0.252 Sum_probs=30.2
Q ss_pred HHHHHHHHhccCCeEEEEEeecCCCCCcceEEEEEeCChHHHHHHHH
Q 021295 70 EDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLA 116 (314)
Q Consensus 70 e~~l~~~F~~~G~v~~v~i~~~~~~g~~rG~afV~F~~~~~a~~a~~ 116 (314)
+.+|.+.+.+.| |.+..|.++..+ ..=|++++.++.+...+++.
T Consensus 25 WPEv~~~l~~~G-i~~ysIf~~g~~--~~LF~~~E~~~~~~~~~~l~ 68 (106)
T PF05336_consen 25 WPEVLAALREAG-IRNYSIFRDGDT--GRLFMYMETDDFDADMAALA 68 (106)
T ss_dssp -HHHHHHHHHCT-EEEEEEEEETTT--TEEEEEEEECT-CHHHHHGG
T ss_pred CHHHHHHHHHCC-CeEEEEEEeCCC--CEEEEEEEecChhhHHHHcc
Confidence 478888888876 888888877543 46689999988444444443
No 326
>COG2061 ACT-domain-containing protein, predicted allosteric regulator of homoserine dehydrogenase [Amino acid transport and metabolism]
Probab=27.68 E-value=3.5e+02 Score=22.25 Aligned_cols=69 Identities=16% Similarity=0.190 Sum_probs=39.7
Q ss_pred CcceEEEcCCCCCCCHHHHHHHHhccC--CeEEEEEeecCCCCCcceEEEEEeCChHHHHHHHHhcCCeeeC
Q 021295 55 KTKKIFVGGIPSSVNEDEFKDFFMQFG--DVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELA 124 (314)
Q Consensus 55 ~~~~l~V~nLp~~~~e~~l~~~F~~~G--~v~~v~i~~~~~~g~~rG~afV~F~~~~~a~~a~~~l~~~~~~ 124 (314)
....|.|+.+-.. +-+|-.+...+.+ .|+++.+......+.+.-.-.+.....+..++|+..++.....
T Consensus 87 ~~~vvLIGhiv~t-diqDTId~In~ig~A~vvDl~L~Mp~~e~~SsA~iti~a~~~e~l~ea~~~l~ev~~e 157 (170)
T COG2061 87 KTDVVLIGHIVHT-DIQDTIDRINSIGGAEVVDLSLSMPGIEGESSARITIIAVGKEKLDEALRRLKEVAME 157 (170)
T ss_pred eEeEEEEEeeecC-cHHHHHHHhhccCCEEEEEEEeecCCCCCCcceeEEEEEcChhHHHHHHHHHHHHHhh
Confidence 3456777766433 3233333334444 6777777665445545433444556788999998877654433
No 327
>cd04880 ACT_AAAH-PDT-like ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH). ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH): Phenylalanine hydroxylases (PAH), tyrosine hydroxylases (TH) and tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. This family of enzymes shares a common catalytic mechanism, in which dioxygen is used by an active site containing a single, reduced iron atom to hydroxylate an unactivated aromatic substrate, concomitant with a two-electron oxidation of tetrahydropterin (BH4) cofactor to its quinonoid dihydropterin form. Eukaryotic AAAHs have an N-terminal ACT (regulatory) domain, a middle catalytic domain and a C-terminal domain which is responsible for the oligomeric state of the enzyme forming a domain-swapped tetrameric coiled-coil. The PAH, TH, and TPH enzymes contain highly conserved catalytic domains but distinct N-terminal ACT domains and differ in their mech
Probab=27.64 E-value=2e+02 Score=19.61 Aligned_cols=51 Identities=12% Similarity=0.131 Sum_probs=30.9
Q ss_pred CHHHHHHHHhccC-CeEEEEEeecCCCCCcceEEEEEeCC---hHHHHHHHHhcCC
Q 021295 69 NEDEFKDFFMQFG-DVQEHQIMRDHSTSRSRGFGFITFDT---EQAVDDLLAKGNK 120 (314)
Q Consensus 69 ~e~~l~~~F~~~G-~v~~v~i~~~~~~g~~rG~afV~F~~---~~~a~~a~~~l~~ 120 (314)
+-.+|.+.|++++ .|..|.-.+.+. ....=.-||+++. .+.++++++.|..
T Consensus 12 ~L~~vL~~f~~~~vni~~I~Srp~~~-~~~~~~f~id~~~~~~~~~~~~~l~~l~~ 66 (75)
T cd04880 12 ALAKALKVFAERGINLTKIESRPSRK-GLWEYEFFVDFEGHIDDPDVKEALEELKR 66 (75)
T ss_pred HHHHHHHHHHHCCCCEEEEEeeecCC-CCceEEEEEEEECCCCCHHHHHHHHHHHH
Confidence 3467888888875 566664443322 2233356788874 5667777776644
No 328
>KOG1930 consensus Focal adhesion protein Tensin, contains PTB domain [Signal transduction mechanisms; Cytoskeleton]
Probab=27.63 E-value=49 Score=31.53 Aligned_cols=21 Identities=19% Similarity=0.262 Sum_probs=10.5
Q ss_pred CCHHHHHHHHhccCCeEEEEE
Q 021295 68 VNEDEFKDFFMQFGDVQEHQI 88 (314)
Q Consensus 68 ~~e~~l~~~F~~~G~v~~v~i 88 (314)
+|+.+-|.||.++=+|..|.+
T Consensus 396 LTDNqRK~FFRRHypv~sv~F 416 (483)
T KOG1930|consen 396 LTDNQRKVFFRRHYPVNSVIF 416 (483)
T ss_pred eeccchhhheecccccceeEE
Confidence 344455555555545554443
No 329
>PF11823 DUF3343: Protein of unknown function (DUF3343); InterPro: IPR021778 This family of proteins are functionally uncharacterised. This protein is found in bacteria and archaea. Proteins in this family are typically between 78 to 102 amino acids in length.
Probab=27.56 E-value=51 Score=22.98 Aligned_cols=24 Identities=17% Similarity=0.112 Sum_probs=19.3
Q ss_pred EEEEEeCChHHHHHHHHhcCCeee
Q 021295 100 FGFITFDTEQAVDDLLAKGNKLEL 123 (314)
Q Consensus 100 ~afV~F~~~~~a~~a~~~l~~~~~ 123 (314)
+.+|+|.+..+|.+|-+.|....+
T Consensus 3 ~~~i~F~st~~a~~~ek~lk~~gi 26 (73)
T PF11823_consen 3 YYLITFPSTHDAMKAEKLLKKNGI 26 (73)
T ss_pred eEEEEECCHHHHHHHHHHHHHCCC
Confidence 679999999999988887655444
No 330
>PF00585 Thr_dehydrat_C: C-terminal regulatory domain of Threonine dehydratase; InterPro: IPR001721 Threonine dehydratases including Serine/threonine dehydratase (see IPR001926 from INTERPRO) contain a common C-terminal region that may have a regulatory role. Some members contain two copies of this region [].; GO: 0004794 L-threonine ammonia-lyase activity, 0009097 isoleucine biosynthetic process; PDB: 1TDJ_A 3IAU_A.
Probab=27.54 E-value=1.7e+02 Score=21.37 Aligned_cols=60 Identities=10% Similarity=0.199 Sum_probs=31.9
Q ss_pred EEEcCCCCCCCHHHHHHHHhccCCeEEEEEeecCCCCCcceEEEEEe--CChHHHHHHHHhcCC
Q 021295 59 IFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITF--DTEQAVDDLLAKGNK 120 (314)
Q Consensus 59 l~V~nLp~~~~e~~l~~~F~~~G~v~~v~i~~~~~~g~~rG~afV~F--~~~~~a~~a~~~l~~ 120 (314)
+|.-.+|... -.|++|+..++...+|....=+.++...+.++|-| .+.++.++.++.|+.
T Consensus 12 ~~~v~~PE~p--Gal~~F~~~l~~~~nITeF~YR~~~~~~a~vlvgi~v~~~~~~~~l~~~L~~ 73 (91)
T PF00585_consen 12 LFAVEFPERP--GALKRFLDALGPRNNITEFHYRYSGDDFARVLVGIEVPDAEDLEELIERLKA 73 (91)
T ss_dssp EEEEE--BST--THCHHHHHCCSSSE-EEEEEEE-TTTSCSEEEEEEE-SSTHHHHHHHHHHTS
T ss_pred EEEEECCCCc--cHHHHHHHHhCCCceEEEEEEcCCCCCeeeEEEEEEeCCHHHHHHHHHHHHH
Confidence 3444444432 35677777776544454444344555667777655 445566666666654
No 331
>PRK11230 glycolate oxidase subunit GlcD; Provisional
Probab=27.48 E-value=1.8e+02 Score=28.75 Aligned_cols=49 Identities=12% Similarity=0.055 Sum_probs=34.7
Q ss_pred HHHHHHHHh----ccCCeEEEEEeecCCCCCcceEEEEEeCChHHHHHHHHhcC
Q 021295 70 EDEFKDFFM----QFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGN 119 (314)
Q Consensus 70 e~~l~~~F~----~~G~v~~v~i~~~~~~g~~rG~afV~F~~~~~a~~a~~~l~ 119 (314)
.-+|..+|. .+|.|+++.|...+.. +.+-..++.|.+.+++.+|+..+.
T Consensus 203 g~dl~~l~~Gs~GtlGIIt~atlkl~p~p-~~~~~~~~~f~~~~~a~~~~~~~~ 255 (499)
T PRK11230 203 GFDLLALFTGSEGMLGVVTEVTVKLLPKP-PVARVLLASFDSVEKAGLAVGDII 255 (499)
T ss_pred ccchHhhhccCCCccEEEEEEEEEEEcCC-cceEEEEEECCCHHHHHHHHHHHH
Confidence 456777775 5678888777665433 344567889999999988887653
No 332
>KOG0862 consensus Synaptobrevin/VAMP-like protein SEC22 [Intracellular trafficking, secretion, and vesicular transport]
Probab=27.36 E-value=37 Score=29.35 Aligned_cols=11 Identities=64% Similarity=1.090 Sum_probs=9.1
Q ss_pred cceEEEEEeCC
Q 021295 97 SRGFGFITFDT 107 (314)
Q Consensus 97 ~rG~afV~F~~ 107 (314)
.|-||||+|++
T Consensus 108 ~RPY~FieFD~ 118 (216)
T KOG0862|consen 108 SRPYAFIEFDT 118 (216)
T ss_pred CCCeeEEehhH
Confidence 46699999976
No 333
>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function. It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation [].
Probab=27.24 E-value=2.7e+02 Score=25.87 Aligned_cols=63 Identities=16% Similarity=0.348 Sum_probs=37.3
Q ss_pred cccEEEEEECCHHHHHHHHHccCccCC-cEEEEeecCCCC-CCCCCCCCcceEEE--cC--CCCCCCHH
Q 021295 9 PRGFGFVTYADPSVVDKVIEDTHIING-KQVEIKRTIPKG-AVGSKDFKTKKIFV--GG--IPSSVNED 71 (314)
Q Consensus 9 ~kG~aFV~f~~~~~a~~A~~~~~~i~g-~~i~v~~~~~~~-~~~~~~~~~~~l~V--~n--Lp~~~~e~ 71 (314)
...|-|..|.+++++.++|++...-.. .+|......+.. ...........+.| .+ +||...++
T Consensus 192 ~~~yd~~~f~~~~~~~~~i~~k~~~~~~~rlvA~~~w~~~~~~~~~~~~~~~~~i~~~~~~~~Wn~~~~ 260 (352)
T PF09848_consen 192 DENYDFRVFDSPEEMKEAIKEKNKEGGLSRLVAGYCWPWKDKGSKKDKSVNDIYIEEGDWKMPWNSENK 260 (352)
T ss_pred CCceeEEEECCHHHHHHHHHHHhcccCCceEEEecccccccccCCCCCCCCCeEEecCceecCCCCCCC
Confidence 578999999999999999995443332 334443333333 12223344555666 32 56665544
No 334
>PRK13982 bifunctional SbtC-like/phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Provisional
Probab=27.16 E-value=5.7e+02 Score=25.10 Aligned_cols=94 Identities=12% Similarity=0.163 Sum_probs=60.8
Q ss_pred ECCHHHHHHHHHc----c--CccCCcEEEEeecCCCCCCCCCCCCcceEEEcCCCCCCCHHHHHHHHhccCCeEEEEEee
Q 021295 17 YADPSVVDKVIED----T--HIINGKQVEIKRTIPKGAVGSKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMR 90 (314)
Q Consensus 17 f~~~~~a~~A~~~----~--~~i~g~~i~v~~~~~~~~~~~~~~~~~~l~V~nLp~~~~e~~l~~~F~~~G~v~~v~i~~ 90 (314)
+.++++...++.. . ..+.+++|.|..-...+... ..=||.|.+....=-.|-+.+...|. +|.++.
T Consensus 232 m~e~~~I~~~v~~~~~~~~~~~l~gkkvLITaGpT~E~ID------pVR~ItN~SSGkmG~alA~aa~~~GA--~VtlI~ 303 (475)
T PRK13982 232 MAEPLEIAAAAEALLRPPQPKPLAGRRVLITAGPTHEPID------PVRYIANRSSGKQGFAIAAAAAAAGA--EVTLIS 303 (475)
T ss_pred CCCHHHHHHHHHHHHhhccccccCCCEEEEecCCccccCC------cceeeCCCCchHHHHHHHHHHHHCCC--cEEEEe
Confidence 5666666665541 1 35788888876544443332 33478888888777888888887773 333333
Q ss_pred cCC-CCCcceEEEEEeCChHHHHHHHHhc
Q 021295 91 DHS-TSRSRGFGFITFDTEQAVDDLLAKG 118 (314)
Q Consensus 91 ~~~-~g~~rG~afV~F~~~~~a~~a~~~l 118 (314)
-+. ...+.+.-+|.+++.+++.+|++..
T Consensus 304 Gp~~~~~p~~v~~i~V~ta~eM~~av~~~ 332 (475)
T PRK13982 304 GPVDLADPQGVKVIHVESARQMLAAVEAA 332 (475)
T ss_pred CCcCCCCCCCceEEEecCHHHHHHHHHhh
Confidence 211 1235667789999999999998764
No 335
>PRK11895 ilvH acetolactate synthase 3 regulatory subunit; Reviewed
Probab=26.84 E-value=2.3e+02 Score=23.34 Aligned_cols=51 Identities=20% Similarity=0.310 Sum_probs=33.9
Q ss_pred HHHHHHHHhccC-CeEEEEEeecCCCCCcceEEEEEeCChHHHHHHHHhcCCe
Q 021295 70 EDEFKDFFMQFG-DVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKL 121 (314)
Q Consensus 70 e~~l~~~F~~~G-~v~~v~i~~~~~~g~~rG~afV~F~~~~~a~~a~~~l~~~ 121 (314)
-..|-.+|++.+ .|..+.+....+.+.++ +.++.-.+.+.+++.+++|+++
T Consensus 16 L~rI~~lf~rrg~NI~Sl~v~~te~~~~sr-iti~V~~~~~~i~qi~kQl~KL 67 (161)
T PRK11895 16 LSRVAGLFSRRGYNIESLTVGPTEDPGLSR-MTIVTSGDEQVIEQITKQLNKL 67 (161)
T ss_pred HHHHHHHHHhCCCcEEEEEeeecCCCCEEE-EEEEEECCHHHHHHHHHHHhcc
Confidence 367778888876 57777766553233333 4455556788889988888774
No 336
>KOG1579 consensus Homocysteine S-methyltransferase [Amino acid transport and metabolism]
Probab=26.69 E-value=63 Score=29.69 Aligned_cols=62 Identities=16% Similarity=0.132 Sum_probs=38.4
Q ss_pred CCCCCCHHHHHHHHhccCCeEEEEEeecCCCCCcceEEEEEeCChHHHHHHHHhcCCeeeCCeEEEEeecC
Q 021295 64 IPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVKKAE 134 (314)
Q Consensus 64 Lp~~~~e~~l~~~F~~~G~v~~v~i~~~~~~g~~rG~afV~F~~~~~a~~a~~~l~~~~~~gr~l~V~~a~ 134 (314)
--..++.++|+++|..- ++ ++... .-.-.+|-++.+..+|++|++.|... ...+++-|....
T Consensus 137 Y~~~~~~~el~~~~k~q--le---~~~~~---gvD~L~fETip~~~EA~a~l~~l~~~-~~~~p~~is~t~ 198 (317)
T KOG1579|consen 137 YGDNVEFEELYDFFKQQ--LE---VFLEA---GVDLLAFETIPNVAEAKAALELLQEL-GPSKPFWISFTI 198 (317)
T ss_pred cccccCHHHHHHHHHHH--HH---HHHhC---CCCEEEEeecCCHHHHHHHHHHHHhc-CCCCcEEEEEEe
Confidence 34567889999999753 11 11110 02336888899999999999987554 244455554443
No 337
>PRK14443 acylphosphatase; Provisional
Probab=26.52 E-value=1.9e+02 Score=21.42 Aligned_cols=10 Identities=20% Similarity=0.547 Sum_probs=5.7
Q ss_pred CHHHHHHHHh
Q 021295 69 NEDEFKDFFM 78 (314)
Q Consensus 69 ~e~~l~~~F~ 78 (314)
++++|.+|+.
T Consensus 51 ~~~~l~~f~~ 60 (93)
T PRK14443 51 EEENLNKFID 60 (93)
T ss_pred CHHHHHHHHH
Confidence 5556665554
No 338
>cd00187 TOP4c DNA Topoisomerase, subtype IIA; domain A'; bacterial DNA topoisomerase IV (C subunit, ParC), bacterial DNA gyrases (A subunit, GyrA),mammalian DNA toposiomerases II. DNA topoisomerases are essential enzymes that regulate the conformational changes in DNA topology by catalysing the concerted breakage and rejoining of DNA strands during normal cellular growth.
Probab=26.42 E-value=1.6e+02 Score=28.66 Aligned_cols=59 Identities=22% Similarity=0.383 Sum_probs=35.9
Q ss_pred ceEEEcCCCCCCCHHHHHHHHhcc---CCeEEEEEeecCCCCCcceEEE-EEeCChHHHHHHHHh
Q 021295 57 KKIFVGGIPSSVNEDEFKDFFMQF---GDVQEHQIMRDHSTSRSRGFGF-ITFDTEQAVDDLLAK 117 (314)
Q Consensus 57 ~~l~V~nLp~~~~e~~l~~~F~~~---G~v~~v~i~~~~~~g~~rG~af-V~F~~~~~a~~a~~~ 117 (314)
++|.|..||+.+..++|++.+.+. .++..|.=++|..+ + .++.| |+++....++..++.
T Consensus 226 ~~i~ItElP~~~~~~~~~e~i~~l~~~~k~~~I~~~~D~s~-~-~~vrivI~lk~~~~~~~~~~~ 288 (445)
T cd00187 226 NTIEITELPYQVNKAKLKEKIAELVKDKKIEGISDVRDESD-R-EGIRFVIELKRGAMAEVVLNG 288 (445)
T ss_pred ceEEEEeCCCcccHHHHHHHHHHHHhcCCCcccceeeeccC-C-CceEEEEEECCCccHHHHHHH
Confidence 689999999999998888776532 33444444445333 2 24555 566555555444443
No 339
>COG1098 VacB Predicted RNA binding protein (contains ribosomal protein S1 domain) [Translation, ribosomal structure and biogenesis]
Probab=26.32 E-value=1.3e+02 Score=23.78 Aligned_cols=32 Identities=19% Similarity=0.336 Sum_probs=22.4
Q ss_pred EEEEeCC--------hHHHHHHHHhcCCeeeCCeEEEEee
Q 021295 101 GFITFDT--------EQAVDDLLAKGNKLELAGAQVEVKK 132 (314)
Q Consensus 101 afV~F~~--------~~~a~~a~~~l~~~~~~gr~l~V~~ 132 (314)
|||+|+. .|.+..-++.+|.+.-.+..|.|+.
T Consensus 21 AFV~l~~g~tGLVHISEIa~~fVkdI~d~L~vG~eV~vKV 60 (129)
T COG1098 21 AFVELEGGKTGLVHISEIADGFVKDIHDHLKVGQEVKVKV 60 (129)
T ss_pred eEEEecCCCcceEEehHhhhhhHHhHHHHhcCCCEEEEEE
Confidence 8999988 4566666777777666666666653
No 340
>PHA02275 hypothetical protein
Probab=26.31 E-value=26 Score=26.20 Aligned_cols=46 Identities=20% Similarity=0.177 Sum_probs=26.1
Q ss_pred CCHHHHHHHHhccCCeEEEEEeecCCCCCcceEEEEEeCChHHHHH
Q 021295 68 VNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDD 113 (314)
Q Consensus 68 ~~e~~l~~~F~~~G~v~~v~i~~~~~~g~~rG~afV~F~~~~~a~~ 113 (314)
++++.++.|..+--+|..+.|..-....--+-.+++.|.+.+....
T Consensus 23 ~~~d~~~~f~~~~~kin~ldis~v~~~~~d~~~~ilqfqd~~~~i~ 68 (125)
T PHA02275 23 VTEDLWKVFKDMKPKINTLDISNVVSKDLDKSKPILQFQDSDGVIE 68 (125)
T ss_pred hhHHHHHHHHHhCccccccchhhhhhhhhccccceeeeecCCchhh
Confidence 4566666666666666666554332222234467888877654433
No 341
>COG0129 IlvD Dihydroxyacid dehydratase/phosphogluconate dehydratase [Amino acid transport and metabolism / Carbohydrate transport and metabolism]
Probab=26.25 E-value=2.4e+02 Score=28.29 Aligned_cols=80 Identities=21% Similarity=0.200 Sum_probs=47.6
Q ss_pred EEECCHHHHHHHHHccCccCCcEEEEeecCCCCCCCCCCCCcceEEEcCCCCCCCHHHHHHHHhccCCeEEEEEeec-CC
Q 021295 15 VTYADPSVVDKVIEDTHIINGKQVEIKRTIPKGAVGSKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRD-HS 93 (314)
Q Consensus 15 V~f~~~~~a~~A~~~~~~i~g~~i~v~~~~~~~~~~~~~~~~~~l~V~nLp~~~~e~~l~~~F~~~G~v~~v~i~~~-~~ 93 (314)
+.|.+++++.+|+++...-.+.-+-++..-|+-..-..+. -.+-..+...+--++|-++.| |.
T Consensus 419 ~VFds~e~~~~ai~~g~l~~g~VvVIRyeGPkGgpGMpEm----------------l~~t~~L~~~glg~~vaLITDGRf 482 (575)
T COG0129 419 RVFDSQEDAIKAILDGELKAGDVVVIRYEGPKGGPGMPEM----------------LKPTSALKGKGLGKKVALITDGRF 482 (575)
T ss_pred EEECCHHHHHHHHhcCCCCCCeEEEEeccCCCCCCCchhh----------------hhhhHHHHhCCCCCceeEeccccc
Confidence 4699999999999966655555555565555542221110 001122333444455777766 77
Q ss_pred CCCcceEEEEEeCChHH
Q 021295 94 TSRSRGFGFITFDTEQA 110 (314)
Q Consensus 94 ~g~~rG~afV~F~~~~~ 110 (314)
++.+++.++..-.-+..
T Consensus 483 SG~s~g~~igHvsPEAa 499 (575)
T COG0129 483 SGASRGPSIGHVSPEAA 499 (575)
T ss_pred CCCCCCCeeeeeChhhh
Confidence 88889988887654433
No 342
>COG3955 Exopolysaccharide biosynthesis protein [Cell envelope biogenesis, outer membrane]
Probab=26.24 E-value=2e+02 Score=24.17 Aligned_cols=102 Identities=13% Similarity=0.086 Sum_probs=56.5
Q ss_pred EECCHHHHHHHHHccCccCCcEEEEeecCCCCCCCC-CCCCcceEEEcCCCCCCCHHHHHHHHhccCCeEEEEEeecCCC
Q 021295 16 TYADPSVVDKVIEDTHIINGKQVEIKRTIPKGAVGS-KDFKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHST 94 (314)
Q Consensus 16 ~f~~~~~a~~A~~~~~~i~g~~i~v~~~~~~~~~~~-~~~~~~~l~V~nLp~~~~e~~l~~~F~~~G~v~~v~i~~~~~~ 94 (314)
.|-.+++-.+.++++.-...+.+.++...+.-.... ..-..-- .+-++-...+++|-++-.++- - -+|..+
T Consensus 59 lyl~pdDy~k~len~dyYleQeL~feqe~~~~s~~~yP~G~LgD-i~ihF~Hy~S~eEAk~kWe~R--k--kRin~~--- 130 (211)
T COG3955 59 LYLSPDDYLKFLENMDYYLEQELTFEQEGPVYSCKSYPKGSLGD-IIIHFNHYASFEEAKNKWELR--K--KRINLK--- 130 (211)
T ss_pred EEechHHHHHHHhhhhhhhccceEEEecCCcceeccccCCcccc-EEEeecchhhHHHHHhHHHHH--H--hhcccc---
Confidence 356778888888876666666666665422111100 0000001 233455556777776666532 1 122222
Q ss_pred CCcceEEEEEeCChHH-HHHHHHhcCCeeeCCeEEEE
Q 021295 95 SRSRGFGFITFDTEQA-VDDLLAKGNKLELAGAQVEV 130 (314)
Q Consensus 95 g~~rG~afV~F~~~~~-a~~a~~~l~~~~~~gr~l~V 130 (314)
--||.|++.+. .++.+++++.+....+.|-+
T Consensus 131 -----NLfikm~~kd~v~Ek~v~~fDnLPykNKvif~ 162 (211)
T COG3955 131 -----NLFIKMTDKDGVNEKLVKRFDNLPYKNKVIFT 162 (211)
T ss_pred -----ceEEEEecCCCccHHHHHHhhcCCccceEEec
Confidence 35888888877 67778887777766665554
No 343
>KOG1175 consensus Acyl-CoA synthetase [Lipid transport and metabolism]
Probab=26.06 E-value=42 Score=34.00 Aligned_cols=51 Identities=16% Similarity=0.260 Sum_probs=31.6
Q ss_pred CCcceEEEcCCCCCCCHHHHHHHHhccCCeEEEEEeecCCCCCcceEEEEEeCChHHHHHHHHh
Q 021295 54 FKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAK 117 (314)
Q Consensus 54 ~~~~~l~V~nLp~~~~e~~l~~~F~~~G~v~~v~i~~~~~~g~~rG~afV~F~~~~~a~~a~~~ 117 (314)
.+.+.++|.+||.+.+-..++.++.+. +.=+-+.| .-+++|++.++.+++.
T Consensus 573 ~P~~I~~v~~LPkTrSGKimRr~lrki---~~g~~~~d----------~st~~dp~v~~~~~~~ 623 (626)
T KOG1175|consen 573 VPRLIVFVPGLPKTRSGKIMRRALRKI---ASGKAVGD----------TSTLADPSVIDHLRSI 623 (626)
T ss_pred ccceeEecCCCCccccchhHHHHHHHH---hccCcccc----------ccccCChHHHHHHHHh
Confidence 456678888999998887777777763 11111111 1256677777776664
No 344
>PF12687 DUF3801: Protein of unknown function (DUF3801); InterPro: IPR024234 This functionally uncharacterised protein family is found in bacteria. Proteins found in this family are typically between 158 and 187 amino acids in length and include the PcfB protein.
Probab=25.61 E-value=1.6e+02 Score=25.32 Aligned_cols=56 Identities=16% Similarity=0.331 Sum_probs=35.2
Q ss_pred CCCHHHHHHH---HhccCCeEEEEEeecCCCCCcceEEEEEeCChHHHHHHHHhcCCeeeC
Q 021295 67 SVNEDEFKDF---FMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELA 124 (314)
Q Consensus 67 ~~~e~~l~~~---F~~~G~v~~v~i~~~~~~g~~rG~afV~F~~~~~a~~a~~~l~~~~~~ 124 (314)
++++++|++| ..+|| |. ..|+.|..+...+-..|+.=.+.+.+..|++.+....+.
T Consensus 38 ~i~~~~lk~F~k~AkKyG-V~-yav~kdk~~~~~~~~V~FkA~Da~~i~~af~~~~~~~~~ 96 (204)
T PF12687_consen 38 EITDEDLKEFKKEAKKYG-VD-YAVKKDKSTGPGKYDVFFKAKDADVINRAFKEFSAKKLK 96 (204)
T ss_pred ecCHhhHHHHHHHHHHcC-Cc-eEEeeccCCCCCcEEEEEEcCcHHHHHHHHHHHHHHhhh
Confidence 4455666554 56776 33 445666555544556667778889999999876554443
No 345
>PF12091 DUF3567: Protein of unknown function (DUF3567); InterPro: IPR021951 This family of proteins is functionally uncharacterised. This protein is found in bacteria. Proteins in this family are about 90 amino acids in length. This protein has a conserved EIVDK sequence motif.
Probab=25.54 E-value=51 Score=24.02 Aligned_cols=14 Identities=7% Similarity=0.211 Sum_probs=9.1
Q ss_pred cccEEEEEECCHHH
Q 021295 9 PRGFGFVTYADPSV 22 (314)
Q Consensus 9 ~kG~aFV~f~~~~~ 22 (314)
|--||.|+|.-.++
T Consensus 7 Sd~y~VV~~~~~~~ 20 (85)
T PF12091_consen 7 SDNYCVVEFPPDAG 20 (85)
T ss_pred CCceEEEEecCCCC
Confidence 44589999954433
No 346
>PRK00293 dipZ thiol:disulfide interchange protein precursor; Provisional
Probab=25.45 E-value=93 Score=31.26 Aligned_cols=31 Identities=16% Similarity=0.274 Sum_probs=20.1
Q ss_pred EEEEEECCHHHHHHHHHccCccCCcEEEEeec
Q 021295 12 FGFVTYADPSVVDKVIEDTHIINGKQVEIKRT 43 (314)
Q Consensus 12 ~aFV~f~~~~~a~~A~~~~~~i~g~~i~v~~~ 43 (314)
-.|.++++.++.++++++.. ..+|.+.|+..
T Consensus 452 ~~~~~i~s~~~l~~~l~~a~-~~gK~VlVdF~ 482 (571)
T PRK00293 452 LNFQRIKTVAELDQALAEAK-GKGKPVMLDLY 482 (571)
T ss_pred CCceecCCHHHHHHHHHHHH-hcCCcEEEEEE
Confidence 35888888888888876321 23456666543
No 347
>PRK08178 acetolactate synthase 1 regulatory subunit; Reviewed
Probab=25.38 E-value=2.4e+02 Score=21.17 Aligned_cols=63 Identities=16% Similarity=0.263 Sum_probs=41.8
Q ss_pred cceEEEcCCCCCCCHHHHHHHHhccC-CeEEEEEeecCCCCCcceEEEEEeCChHHHHHHHHhcCCee
Q 021295 56 TKKIFVGGIPSSVNEDEFKDFFMQFG-DVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLE 122 (314)
Q Consensus 56 ~~~l~V~nLp~~~~e~~l~~~F~~~G-~v~~v~i~~~~~~g~~rG~afV~F~~~~~a~~a~~~l~~~~ 122 (314)
.-+|+|.|-|--+ ..+..+|++-+ .|+.+.+.......-+|-.. |. .+.+.+++++++|+++.
T Consensus 10 tisvlv~N~pGVL--~RIaglFsRRgyNIeSLtvg~te~~~iSRmti-vv-~~~~~i~Qi~kQL~KLi 73 (96)
T PRK08178 10 ILELTVRNHPGVM--SHVCGLFARRAFNVEGILCLPIQDGDKSRIWL-LV-NDDQRLEQMISQIEKLE 73 (96)
T ss_pred EEEEEEECCcCHH--HHHHHHHhcCCcCeeeEEEeecCCCCceEEEE-EE-cCchHHHHHHHHHhCCc
Confidence 4466777666433 35678888776 68888877665555566433 33 35688899998887753
No 348
>TIGR03221 muco_delta muconolactone delta-isomerase. Members of this protein family are muconolactone delta-isomerase (EC 5.3.3.4), the CatC protein of the ortho cleavage pathway for metabolizing aromatic compounds by way of catechol.
Probab=25.37 E-value=2.8e+02 Score=20.49 Aligned_cols=64 Identities=9% Similarity=0.208 Sum_probs=44.2
Q ss_pred CCCCCCCHHHHHHH----------HhccCCeEEEEEeecCCCCCcceEEEEEeCChHHHHHHHHhcCCeeeCCeEEEEee
Q 021295 63 GIPSSVNEDEFKDF----------FMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVKK 132 (314)
Q Consensus 63 nLp~~~~e~~l~~~----------F~~~G~v~~v~i~~~~~~g~~rG~afV~F~~~~~a~~a~~~l~~~~~~gr~l~V~~ 132 (314)
+||.+++.+++.++ +.+-|++..+.-+ .++-+.+++..-+|+++..+.|..|.-+.. ..|+|..
T Consensus 9 ~~P~~~~~~~~~~i~a~Eka~a~eLq~~Gk~~~lWRv----~G~~~n~sifdv~s~~eLh~iL~sLPL~p~--m~i~Vtp 82 (90)
T TIGR03221 9 NLPVDMPAEKAAAIKAREKAYAQELQREGKWRHLWRV----AGEYANYSIFDVESNDELHTLLSGLPLFPY--MDIEVTP 82 (90)
T ss_pred eCCCCCCHHHHHHHHHHHHHHHHHHHhCCceEEEEEe----cCCceeEEEEEcCCHHHHHHHHHhCCCCcc--eEeEEEE
Confidence 57777776665443 4456889888766 345566888888999999999988755443 3555543
No 349
>COG0225 MsrA Peptide methionine sulfoxide reductase [Posttranslational modification, protein turnover, chaperones]
Probab=25.35 E-value=1.3e+02 Score=25.22 Aligned_cols=77 Identities=12% Similarity=0.164 Sum_probs=38.9
Q ss_pred CcceEEEcCCCCCCCHHHHHHHHhccCCeEE-EEEeecCCCCCcceEEE-EEeCChH---HHHHHHHhcCCeeeCCeEEE
Q 021295 55 KTKKIFVGGIPSSVNEDEFKDFFMQFGDVQE-HQIMRDHSTSRSRGFGF-ITFDTEQ---AVDDLLAKGNKLELAGAQVE 129 (314)
Q Consensus 55 ~~~~l~V~nLp~~~~e~~l~~~F~~~G~v~~-v~i~~~~~~g~~rG~af-V~F~~~~---~a~~a~~~l~~~~~~gr~l~ 129 (314)
..-.|.|.==|..++-++|.++|-+.-.... -+--.|+-+ -|=- |-+.+++ .|++.++++.......++|.
T Consensus 56 HaE~V~V~yDp~~isy~~LL~~ff~ihDPT~~nrQGnD~Gt----qYRs~Iy~~~~~q~~~a~~~~~~~q~~~~~~~~Iv 131 (174)
T COG0225 56 HAEAVEVTYDPKVISYEELLEVFFEIHDPTSLNRQGNDRGT----QYRSAIYYTNEEQKAIAEASIEELQASGYFKKPIV 131 (174)
T ss_pred ceEEEEEEeCCccccHHHHHHHHheecCCCCCCccCCcccc----cceeEEEEcCHHHHHHHHHHHHHHHHhccCCCCeE
Confidence 3446777767788899999888865311111 111111111 1222 3333443 45555556655455565666
Q ss_pred EeecCC
Q 021295 130 VKKAEP 135 (314)
Q Consensus 130 V~~a~~ 135 (314)
++...-
T Consensus 132 teI~p~ 137 (174)
T COG0225 132 TEIEPA 137 (174)
T ss_pred EEeecc
Confidence 654433
No 350
>PF03108 DBD_Tnp_Mut: MuDR family transposase; InterPro: IPR004332 The plant MuDR transposase domain is present in plant proteins that are presumed to be the transposases for Mutator transposable elements [, ]. The function of these proteins is unknown. More information about these proteins can be found at Protein of the Month: Transposase [].
Probab=25.27 E-value=78 Score=21.46 Aligned_cols=30 Identities=17% Similarity=0.320 Sum_probs=22.8
Q ss_pred EEECCHHHHHHHHHccCccCCcEEEEeecC
Q 021295 15 VTYADPSVVDKVIEDTHIINGKQVEIKRTI 44 (314)
Q Consensus 15 V~f~~~~~a~~A~~~~~~i~g~~i~v~~~~ 44 (314)
.+|.+.+++.+||..-.......+.+..+.
T Consensus 8 ~~F~~~~e~k~av~~yai~~~~~~~v~ksd 37 (67)
T PF03108_consen 8 QTFPSKEEFKEAVREYAIKNGFEFKVKKSD 37 (67)
T ss_pred CEECCHHHHHHHHHHHHHhcCcEEEEeccC
Confidence 479999999999996665666777766544
No 351
>PRK05738 rplW 50S ribosomal protein L23; Reviewed
Probab=25.25 E-value=87 Score=23.18 Aligned_cols=32 Identities=16% Similarity=0.275 Sum_probs=22.3
Q ss_pred EEEcCCCCCCCHHHHHHHHhcc-C-CeEEEEEee
Q 021295 59 IFVGGIPSSVNEDEFKDFFMQF-G-DVQEHQIMR 90 (314)
Q Consensus 59 l~V~nLp~~~~e~~l~~~F~~~-G-~v~~v~i~~ 90 (314)
.|+-.++..++..||++.|+++ + +|++|..+.
T Consensus 22 ~~~F~V~~~a~K~eIK~aie~lf~VkV~~VnT~~ 55 (92)
T PRK05738 22 KYVFEVAPDATKPEIKAAVEKLFGVKVESVNTLN 55 (92)
T ss_pred EEEEEECCCCCHHHHHHHHHHHcCCceeEEEEEE
Confidence 4445577899999999999875 3 455555443
No 352
>TIGR01196 edd 6-phosphogluconate dehydratase. A close homolog, designated MocB (mannityl opine catabolism), is found in a mannopine catabolism region of a plasmid of Agrobacterium tumefaciens. However, it is not essential for mannopine catabolism, branches within the cluster of 6-phosphogluconate dehydratases (with a short branch length) in a tree rooted by the presence of other dehydyatases. It may represent an authentic 6-phosphogluconate dehydratase, redundant with the chromosomal copy shown to exist in plasmid-cured strains. This model includes mocB above the trusted cutoff, although the designation is somewhat tenuous.
Probab=24.99 E-value=2.3e+02 Score=28.57 Aligned_cols=100 Identities=14% Similarity=0.135 Sum_probs=52.0
Q ss_pred EEECCHHHHHHHHHccCccCCcEEEEeecCCCCCCCCCCCCcceEEEcCCCCCCCHHHHHHHHhccCCeEEEEEeec-CC
Q 021295 15 VTYADPSVVDKVIEDTHIINGKQVEIKRTIPKGAVGSKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRD-HS 93 (314)
Q Consensus 15 V~f~~~~~a~~A~~~~~~i~g~~i~v~~~~~~~~~~~~~~~~~~l~V~nLp~~~~e~~l~~~F~~~G~v~~v~i~~~-~~ 93 (314)
+.|++++++.+|+++...-.+.-|-++..-|+-. - .|+-..-......+...|. +|-+++| |.
T Consensus 448 ~VFdsee~~~~ai~~g~i~~g~VvViR~eGPkg~-G-------------MpEm~~~t~~l~~L~~~Gl--~VALITDGRf 511 (601)
T TIGR01196 448 IVFNDQAEVLAAFKAGELERDFVAVVRFQGPKAN-G-------------MPELHKLTPPLGVLQDRGF--KVALVTDGRM 511 (601)
T ss_pred EEECCHHHHHHHHhCCCCCCCcEEEEeCCCCCCC-C-------------chhhccCCchhHHHHhCCC--eEEEEccCcc
Confidence 4599999999999966554555555555555531 1 1111111111123333343 4667766 67
Q ss_pred CCCc-ceEEEEEeCChHHHH-HHHHhc---CC--eeeCCeEEEEe
Q 021295 94 TSRS-RGFGFITFDTEQAVD-DLLAKG---NK--LELAGAQVEVK 131 (314)
Q Consensus 94 ~g~~-rG~afV~F~~~~~a~-~a~~~l---~~--~~~~gr~l~V~ 131 (314)
++.+ ++.|.+... +|++. =.|..+ +- +++..+.|.|.
T Consensus 512 SGaS~~g~~igHVs-PEAa~GGPIAlV~dGD~I~iD~~~~~L~l~ 555 (601)
T TIGR01196 512 SGASGKVPAAIHVT-PEAALGGPIAKIRDGDLIRVDAVNGELNVL 555 (601)
T ss_pred CCcCCCCCeEEEEC-hhhhcCCceEEEecCCEEEEEcCCCEEEEe
Confidence 7777 446666554 44432 223222 22 33445666664
No 353
>TIGR00405 L26e_arch ribosomal protein L24p/L26e, archaeal. This protein contains a KOW domain, shared by bacterial NusG and the L24p/L26e family of ribosomal proteins. Although called archaeal NusG in several publications, it is the only close homolog of eukaryotic L26e in archaeal genomes, shares an operon with L11 in many genomes, and has been sequenced from purified ribosomes. It is here designated as a ribosomal protein for these reasons.
Probab=24.96 E-value=1e+02 Score=24.64 Aligned_cols=26 Identities=8% Similarity=0.192 Sum_probs=20.9
Q ss_pred CcceEEEEEeCChHHHHHHHHhcCCe
Q 021295 96 RSRGFGFITFDTEQAVDDLLAKGNKL 121 (314)
Q Consensus 96 ~~rG~afV~F~~~~~a~~a~~~l~~~ 121 (314)
...||-||+++..++...++..+.++
T Consensus 36 ~fpGYvFV~~~~~~~~~~~i~~~~gv 61 (145)
T TIGR00405 36 SLKGYILVEAETKIDMRNPIIGVPHV 61 (145)
T ss_pred CCCcEEEEEEECcHHHHHHHhCCCCE
Confidence 37899999999888888888776553
No 354
>TIGR01873 cas_CT1978 CRISPR-associated endoribonuclease Cas2, E. coli subfamily. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This model represents a minor branch of the Cas2 family of CRISPR-associated endonuclease, whereas most Cas2 proteins are modeled instead by TIGR01573. This form of Cas2 is characteristic for the Ecoli subtype of CRISPR/Cas locus.
Probab=24.74 E-value=61 Score=23.81 Aligned_cols=49 Identities=22% Similarity=0.382 Sum_probs=27.3
Q ss_pred cceEEEcCCCCCCCHHHHHHHHhcc-CCeEEEEEeecCCCCCcceEEEEEeCC
Q 021295 56 TKKIFVGGIPSSVNEDEFKDFFMQF-GDVQEHQIMRDHSTSRSRGFGFITFDT 107 (314)
Q Consensus 56 ~~~l~V~nLp~~~~e~~l~~~F~~~-G~v~~v~i~~~~~~g~~rG~afV~F~~ 107 (314)
..-|||++++..+.|.-.+.+-+.+ .+= .+.++.. +....||+|.++-+
T Consensus 25 ~~GVyVg~~s~rVRe~lW~~v~~~~~~~G-~avm~~~--~~~e~G~~~~t~G~ 74 (87)
T TIGR01873 25 RAGVYVGGVSASVRERIWDYLAQHCPPKG-SLVITWS--SNTCPGFEFFTLGE 74 (87)
T ss_pred CCCcEEcCCCHHHHHHHHHHHHHhCCCCc-cEEEEEe--CCCCCCcEEEecCC
Confidence 3569999999888765554444442 111 1222221 22345688877755
No 355
>PRK09630 DNA topoisomerase IV subunit A; Provisional
Probab=24.73 E-value=1.7e+02 Score=28.54 Aligned_cols=60 Identities=18% Similarity=0.127 Sum_probs=39.1
Q ss_pred cceEEEcCCCCCCCHHHHHHHHhc---cCCeEEEEEeecCCCCCcceEEEEEeCChHHHHHHHHhc
Q 021295 56 TKKIFVGGIPSSVNEDEFKDFFMQ---FGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKG 118 (314)
Q Consensus 56 ~~~l~V~nLp~~~~e~~l~~~F~~---~G~v~~v~i~~~~~~g~~rG~afV~F~~~~~a~~a~~~l 118 (314)
.++|.|..||+.++.++|.+.+.+ -++|+ |.=++|..+ . .---.|++.....++..|+.|
T Consensus 220 ~~~ivItEIPy~~~t~~lie~I~~l~~~gki~-I~~i~D~s~-~-~v~i~I~Lk~~~~~~~vl~~L 282 (479)
T PRK09630 220 DKTLLIKEICPSTTTETLIRSIENAAKRGIIK-IDSIQDFST-D-LPHIEIKLPKGIYAKDLLRPL 282 (479)
T ss_pred CCEEEEEeCCCcccHHHHHHHHHHHHhcCCCc-cceeeccCC-C-CceEEEEECCCCCHHHHHHHH
Confidence 458999999999999998877553 35554 444555433 2 223346677666666666654
No 356
>PF04127 DFP: DNA / pantothenate metabolism flavoprotein; InterPro: IPR007085 This entry represents the C-terminal domain found in DNA/pantothenate metabolism flavoproteins, which affects synthesis of DNA and pantothenate metabolism. These proteins contain ATP, phosphopantothenate, and cysteine binding sites. The structure of this domain has been determined in human phosphopantothenoylcysteine (PPC) synthetase [] and as the PPC synthase domain (CoaB) from the Escherichia coli coenzyme A bifunctional protein CoaBC []. This domain adopts a 3-layer alpha/beta/alpha fold with mixed beta-sheets, which topologically resembles a combination of Rossmann-like and ribokinase-like folds. The structure of these proteins predicts a ping pong mechanism with initial formation of an acyladenylate intermediate, followed by release of pyrophosphate and attack by cysteine to form the final products PPC and AMP. ; PDB: 1U7W_A 1U7U_A 1U80_C 1U7Z_A 1P9O_B 2GK4_A.
Probab=24.43 E-value=1.8e+02 Score=24.51 Aligned_cols=59 Identities=12% Similarity=0.143 Sum_probs=38.7
Q ss_pred eEEEcCCCCCCCHHHHHHHHhccCCeEEEEEeecCCC-CCcceEEEEEeCChHHHHHHHHhc
Q 021295 58 KIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHST-SRSRGFGFITFDTEQAVDDLLAKG 118 (314)
Q Consensus 58 ~l~V~nLp~~~~e~~l~~~F~~~G~v~~v~i~~~~~~-g~~rG~afV~F~~~~~a~~a~~~l 118 (314)
.=||.|.+.-.+=..|-+.|...|. +|.++..+.+ ..+..+-.|++++.+++.+++..+
T Consensus 20 VR~ItN~SSG~~G~~lA~~~~~~Ga--~V~li~g~~~~~~p~~~~~i~v~sa~em~~~~~~~ 79 (185)
T PF04127_consen 20 VRFITNRSSGKMGAALAEEAARRGA--EVTLIHGPSSLPPPPGVKVIRVESAEEMLEAVKEL 79 (185)
T ss_dssp SEEEEES--SHHHHHHHHHHHHTT---EEEEEE-TTS----TTEEEEE-SSHHHHHHHHHHH
T ss_pred ceEecCCCcCHHHHHHHHHHHHCCC--EEEEEecCccccccccceEEEecchhhhhhhhccc
Confidence 4588999998888999999888775 3334433322 225678999999999998888863
No 357
>PRK04021 hypothetical protein; Reviewed
Probab=24.32 E-value=3e+02 Score=20.38 Aligned_cols=57 Identities=25% Similarity=0.317 Sum_probs=35.0
Q ss_pred CcceEEEcCCCCC-CCHHHHHHHHhc-cCCeEEEEEeecCCCCCcceEEEEEeCChHHHHHHH
Q 021295 55 KTKKIFVGGIPSS-VNEDEFKDFFMQ-FGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLL 115 (314)
Q Consensus 55 ~~~~l~V~nLp~~-~~e~~l~~~F~~-~G~v~~v~i~~~~~~g~~rG~afV~F~~~~~a~~a~ 115 (314)
..-+|.|.-.|.+ -..++|.++|++ |+ + +|.|+.- .+.+.| .-.|+-.+++.+.+.|
T Consensus 32 ~~lkv~v~apP~~GkAN~ali~~LAk~l~-~-~I~I~~G-~~sr~K-~v~i~g~~~e~l~~~L 90 (92)
T PRK04021 32 GRLKVKIKAPPVKGKANKELVKFFSKLLG-A-EVEIIRG-ETSREK-DLLVKGISLEEVKKKL 90 (92)
T ss_pred CEEEEEEecCCCCChHHHHHHHHHHHHhC-C-CEEEEec-CCcCce-EEEEecCCHHHHHHHh
Confidence 3456777777775 344666677755 44 4 6888765 344555 3445556677766655
No 358
>PRK11152 ilvM acetolactate synthase 2 regulatory subunit; Provisional
Probab=24.31 E-value=2.2e+02 Score=20.25 Aligned_cols=60 Identities=17% Similarity=0.170 Sum_probs=37.7
Q ss_pred eEEEcCCCCCCCHHHHHHHHhccC-CeEEEEEeecCCCCCcceEEEEEeCChHHHHHHHHhcCCe
Q 021295 58 KIFVGGIPSSVNEDEFKDFFMQFG-DVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKL 121 (314)
Q Consensus 58 ~l~V~nLp~~~~e~~l~~~F~~~G-~v~~v~i~~~~~~g~~rG~afV~F~~~~~a~~a~~~l~~~ 121 (314)
+|.|.|-|-- -+.+..+|+.-| .|+.+.+-...+...++ .-++. .++..++..+++|+++
T Consensus 7 si~v~n~pGV--L~Ri~~lf~rRGfnI~sl~v~~t~~~~~sr-iti~v-~~~~~i~ql~kQL~KL 67 (76)
T PRK11152 7 TIKARFRPEV--LERVLRVVRHRGFQVCSMNMTQNTDAQNIN-IELTV-ASERPIDLLSSQLNKL 67 (76)
T ss_pred EEEEECCccH--HHHHHHHHhcCCeeeeeEEeeecCCCCEEE-EEEEE-CCCchHHHHHHHHhcC
Confidence 4455554432 256778888877 58888877654333344 23333 6888888888888774
No 359
>PF13037 DUF3898: Domain of unknown function (DUF3898)
Probab=24.25 E-value=57 Score=23.87 Aligned_cols=51 Identities=14% Similarity=0.356 Sum_probs=32.2
Q ss_pred CHHHHHHHHhccCCeEEE--------EEeecCCCCCcceEEEEEeCChHHHHHHHHhcC
Q 021295 69 NEDEFKDFFMQFGDVQEH--------QIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGN 119 (314)
Q Consensus 69 ~e~~l~~~F~~~G~v~~v--------~i~~~~~~g~~rG~afV~F~~~~~a~~a~~~l~ 119 (314)
.+-+|+.+++.||.-..| .|+....-.--||+.=|||-.+++.+..++.+.
T Consensus 32 d~~~Vk~lLaDfG~~iHiAKv~~RYv~liEgd~~~FEKG~SPVEflkP~~l~~V~eri~ 90 (91)
T PF13037_consen 32 DHTTVKGLLADFGETIHIAKVNDRYVLLIEGDSLQFEKGFSPVEFLKPEDLQEVIERIK 90 (91)
T ss_pred CceehhHHHHhhccceeEEEECCEEEEEEEcceEEEccCCCceeeeCchhHHHHHHHhc
Confidence 345677888888753332 222211111236777899999999999998753
No 360
>PTZ00338 dimethyladenosine transferase-like protein; Provisional
Probab=24.20 E-value=1.8e+02 Score=26.43 Aligned_cols=22 Identities=9% Similarity=0.283 Sum_probs=19.0
Q ss_pred eEEEcCCCCCCCHHHHHHHHhc
Q 021295 58 KIFVGGIPSSVNEDEFKDFFMQ 79 (314)
Q Consensus 58 ~l~V~nLp~~~~e~~l~~~F~~ 79 (314)
.+.|.|||+.++...|.++++.
T Consensus 103 d~VvaNlPY~Istpil~~ll~~ 124 (294)
T PTZ00338 103 DVCVANVPYQISSPLVFKLLAH 124 (294)
T ss_pred CEEEecCCcccCcHHHHHHHhc
Confidence 4778999999999999888864
No 361
>PRK14429 acylphosphatase; Provisional
Probab=24.07 E-value=2e+02 Score=20.96 Aligned_cols=10 Identities=0% Similarity=0.268 Sum_probs=5.7
Q ss_pred CHHHHHHHHh
Q 021295 69 NEDEFKDFFM 78 (314)
Q Consensus 69 ~e~~l~~~F~ 78 (314)
++++|.+|+.
T Consensus 49 ~~~~i~~f~~ 58 (90)
T PRK14429 49 SDPAVDNLIA 58 (90)
T ss_pred CHHHHHHHHH
Confidence 5566665554
No 362
>smart00703 NRF N-terminal domain in C. elegans NRF-6 (Nose Resistant to Fluoxetine-4) and NDG-4 (resistant to nordihydroguaiaretic acid-4). Also present in several other worm and fly proteins.
Probab=24.05 E-value=2.6e+02 Score=21.12 Aligned_cols=72 Identities=15% Similarity=0.047 Sum_probs=36.2
Q ss_pred cccEEEEEECCHHHHHHHHH---cc--CccCCcEEEEeecCCCCCCCCC--CCCcceEEE-cCCCCCCCHHHHHHHHhcc
Q 021295 9 PRGFGFVTYADPSVVDKVIE---DT--HIINGKQVEIKRTIPKGAVGSK--DFKTKKIFV-GGIPSSVNEDEFKDFFMQF 80 (314)
Q Consensus 9 ~kG~aFV~f~~~~~a~~A~~---~~--~~i~g~~i~v~~~~~~~~~~~~--~~~~~~l~V-~nLp~~~~e~~l~~~F~~~ 80 (314)
+.|+-+-.+.+.=+-+++++ .. ..+.++.-.+............ ......|.+ --||.+++++||++++..+
T Consensus 15 psGll~Gn~~~lG~ydeC~~i~~~~~~~~~~g~YC~~~~~~~~~~~~~~~~~~~~~~~~~gvC~P~sCs~~dv~~l~~~~ 94 (110)
T smart00703 15 PSGLLEGNNLWLGSYEECLRISGPGTSTKYQGKYCYLPLVPGKNLNCSIKSLTSVLVLRTGVCLPSSCSAADLKTLLNQL 94 (110)
T ss_pred CCeEEEeecCcccCHHHHhhhhccCcCcccceeeeeEEeccccchhhhhhccccccceEEEEEeCCCCCHHHHHHHHHHH
Confidence 44554444444334444443 11 2455555555444332211111 112223443 3589999999999998775
No 363
>PF13721 SecD-TM1: SecD export protein N-terminal TM region
Probab=24.04 E-value=3.1e+02 Score=20.53 Aligned_cols=43 Identities=16% Similarity=0.026 Sum_probs=29.4
Q ss_pred HHHHHHHhccCC-eEEEEEeecCCCCCcceEEEEEeCChHHHHHHHHhcCCe
Q 021295 71 DEFKDFFMQFGD-VQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKL 121 (314)
Q Consensus 71 ~~l~~~F~~~G~-v~~v~i~~~~~~g~~rG~afV~F~~~~~a~~a~~~l~~~ 121 (314)
++|++++++-+- +++|..-.+ --.|.|++.++-.+|.+.|+..
T Consensus 49 ~~v~~~L~~~~I~~k~i~~~~~--------~llirf~~~~~Ql~Ak~~L~~~ 92 (101)
T PF13721_consen 49 FQVEQALKAAGIAVKSIEQEGD--------SLLIRFDSTDQQLKAKDVLSKA 92 (101)
T ss_pred HHHHHHHHHCCCCcceEEeeCC--------EEEEEECCHHHHHHHHHHHHHH
Confidence 588888888763 444543322 5789999998877777765443
No 364
>PRK09631 DNA topoisomerase IV subunit A; Provisional
Probab=24.01 E-value=2e+02 Score=29.35 Aligned_cols=60 Identities=13% Similarity=0.118 Sum_probs=38.0
Q ss_pred cceEEEcCCCCCCCHHHHHHHHhc---cCCeEEEEEeecCCCCCcceEEEEEeCChHHHHHHHHhc
Q 021295 56 TKKIFVGGIPSSVNEDEFKDFFMQ---FGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKG 118 (314)
Q Consensus 56 ~~~l~V~nLp~~~~e~~l~~~F~~---~G~v~~v~i~~~~~~g~~rG~afV~F~~~~~a~~a~~~l 118 (314)
.++|.|..||+.++.+.|.+.+.+ -++|+ |.=++|. |.+ .-.-.|++.....++..++.|
T Consensus 220 ~~~ivItEiP~~~~~~~li~~i~~~~~~~ki~-I~~i~D~-s~~-~v~i~i~l~~~~~~~~~~~~L 282 (635)
T PRK09631 220 EKTIVIREIPFGTTTESLIASIEKAARKGKIK-ISSINDY-TAE-NVEIEIKLPRGVYASEVIEAL 282 (635)
T ss_pred CCEEEEEeCCCcccHHHHHHHHHHHHHcCCCc-cceeEeC-CCC-cEEEEEEECCCCCHHHHHHHH
Confidence 368999999999999988876543 35555 5555664 332 223345666655555555544
No 365
>COG5337 CotH Spore coat assembly protein [Cell envelope biogenesis, outer membrane]
Probab=23.87 E-value=97 Score=29.01 Aligned_cols=49 Identities=16% Similarity=0.209 Sum_probs=24.9
Q ss_pred CCCCCHHHHHHHHhccCCeEE-EEEeecCCCCCcceEEEEEeCChHHHHHH
Q 021295 65 PSSVNEDEFKDFFMQFGDVQE-HQIMRDHSTSRSRGFGFITFDTEQAVDDL 114 (314)
Q Consensus 65 p~~~~e~~l~~~F~~~G~v~~-v~i~~~~~~g~~rG~afV~F~~~~~a~~a 114 (314)
|.-+.|.--.++|+.+|.|.. +.+..-..+.++. -.+|+++++++--.+
T Consensus 149 ~sl~~e~laL~~~se~G~vsp~~sfa~v~~nd~~~-~~yl~le~vDE~Yl~ 198 (473)
T COG5337 149 PSLMREKLALDFFSELGTVSPKASFAFVKMNDKNE-GVYLELESVDEYYLA 198 (473)
T ss_pred chHhhhhHHHHHHHHhccccccceeEEEEecCCCC-cEEEEEecccHHHHH
Confidence 334455555688999998752 2211111222222 246667776554443
No 366
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=23.72 E-value=92 Score=28.86 Aligned_cols=63 Identities=14% Similarity=0.252 Sum_probs=40.1
Q ss_pred EEEEECCHHHHHHHHH--ccCccCCcEEEEeecCCCCCC----CCCCCCcceEEEcCCCC---CCCHHHHHH
Q 021295 13 GFVTYADPSVVDKVIE--DTHIINGKQVEIKRTIPKGAV----GSKDFKTKKIFVGGIPS---SVNEDEFKD 75 (314)
Q Consensus 13 aFV~f~~~~~a~~A~~--~~~~i~g~~i~v~~~~~~~~~----~~~~~~~~~l~V~nLp~---~~~e~~l~~ 75 (314)
.+|+|.+.|+|..||. +...++++-|+...-+.+-.. ...-....++||-.--+ ..+.+||..
T Consensus 168 vYITy~~kedAarcIa~vDgs~~DGr~lkatYGTTKYCtsYLRn~~CpNp~CMyLHEpg~e~Ds~tK~el~n 239 (480)
T COG5175 168 VYITYSTKEDAARCIAEVDGSLLDGRVLKATYGTTKYCTSYLRNAVCPNPDCMYLHEPGPEKDSLTKDELCN 239 (480)
T ss_pred EEEEecchHHHHHHHHHhccccccCceEeeecCchHHHHHHHcCCCCCCCCeeeecCCCcccccccHHHHhh
Confidence 3899999999999998 666889999888765544211 11223445666643322 345666643
No 367
>KOG2854 consensus Possible pfkB family carbohydrate kinase [Carbohydrate transport and metabolism]
Probab=23.46 E-value=85 Score=29.09 Aligned_cols=18 Identities=17% Similarity=0.296 Sum_probs=14.4
Q ss_pred EEEEEeCChHHHHHHHHh
Q 021295 100 FGFITFDTEQAVDDLLAK 117 (314)
Q Consensus 100 ~afV~F~~~~~a~~a~~~ 117 (314)
|+.|.|-++++|++..+.
T Consensus 214 y~DiifgNe~EA~af~~~ 231 (343)
T KOG2854|consen 214 YADIIFGNEDEAAAFARA 231 (343)
T ss_pred cceEEEcCHHHHHHHHHh
Confidence 788999998888776654
No 368
>PF10281 Ish1: Putative stress-responsive nuclear envelope protein; InterPro: IPR018803 This group of proteins, found primarily in fungi, consists of putative stress-responsive nuclear envelope protein Ish1 and homologues [].
Probab=23.42 E-value=71 Score=19.18 Aligned_cols=17 Identities=12% Similarity=0.329 Sum_probs=14.2
Q ss_pred CCCHHHHHHHHhccCCe
Q 021295 67 SVNEDEFKDFFMQFGDV 83 (314)
Q Consensus 67 ~~~e~~l~~~F~~~G~v 83 (314)
+.++++|++++.+++.+
T Consensus 3 tWs~~~L~~wL~~~gi~ 19 (38)
T PF10281_consen 3 TWSDSDLKSWLKSHGIP 19 (38)
T ss_pred CCCHHHHHHHHHHcCCC
Confidence 57889999999998754
No 369
>PRK09054 phosphogluconate dehydratase; Validated
Probab=23.41 E-value=2.7e+02 Score=28.20 Aligned_cols=105 Identities=16% Similarity=0.153 Sum_probs=53.5
Q ss_pred ccEEEEEECCHHHHHHHHHccCccCCcEEEEeecCCCCCCCCCCCCcceEEEcCCCCCCCHHHHHHHHhccCCeEEEEEe
Q 021295 10 RGFGFVTYADPSVVDKVIEDTHIINGKQVEIKRTIPKGAVGSKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIM 89 (314)
Q Consensus 10 kG~aFV~f~~~~~a~~A~~~~~~i~g~~i~v~~~~~~~~~~~~~~~~~~l~V~nLp~~~~e~~l~~~F~~~G~v~~v~i~ 89 (314)
+|=| +.|++++++.+|+++...-.+.-|-++..-|+-. - .|+-..-..+...+...|. +|-++
T Consensus 445 ~GpA-~VFdsee~~~~Ai~~g~l~~g~VvViR~eGPkg~-G-------------MpEm~~~Tp~l~~L~~~Gl--~VALI 507 (603)
T PRK09054 445 EAPA-RVFDSQEEVQAAFKAGELDRDFVVVVRFQGPKAN-G-------------MPELHKLTPPLGVLQDRGF--KVALV 507 (603)
T ss_pred EeeE-EEECCHHHHHHHHhCCCCCCCcEEEEeCCCCCCC-C-------------chhhhcccchhHHHHhCCC--eEEEe
Confidence 3434 4599999999999966544445555555555431 1 1111111111122333443 57677
Q ss_pred ec-CCCCCc-ceEEEEEeCChHHHH-HHHHhc---CC--eeeCCeEEEEee
Q 021295 90 RD-HSTSRS-RGFGFITFDTEQAVD-DLLAKG---NK--LELAGAQVEVKK 132 (314)
Q Consensus 90 ~~-~~~g~~-rG~afV~F~~~~~a~-~a~~~l---~~--~~~~gr~l~V~~ 132 (314)
+| |.++-+ ++.|.+... +|++. =.|..+ +- +++..+.|.|..
T Consensus 508 TDGRfSGaS~~~~~igHVs-PEAa~GGPIAlV~dGD~I~iD~~~~~L~v~v 557 (603)
T PRK09054 508 TDGRMSGASGKVPAAIHVT-PEALDGGPIAKVRDGDIIRLDAETGELEVLV 557 (603)
T ss_pred ccCccCCcCCCCCEEEEEC-hhhccCCcEEEEeCCCEEEEECCCCEEEEec
Confidence 66 777777 446666554 44432 222222 11 334456666653
No 370
>smart00738 NGN In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold. In Spt5p, this domain may confer affinity for Spt4p.Spt4p
Probab=23.41 E-value=2.1e+02 Score=20.98 Aligned_cols=22 Identities=23% Similarity=0.271 Sum_probs=17.4
Q ss_pred eEEEEEeCChHHHHHHHHhcCC
Q 021295 99 GFGFITFDTEQAVDDLLAKGNK 120 (314)
Q Consensus 99 G~afV~F~~~~~a~~a~~~l~~ 120 (314)
||.||+++..+++..+|..+.+
T Consensus 60 GYvFv~~~~~~~~~~~i~~~~~ 81 (106)
T smart00738 60 GYIFVEADLEDEVWTAIRGTPG 81 (106)
T ss_pred CEEEEEEEeCCcHHHHHhcCCC
Confidence 8999999877777777776555
No 371
>TIGR03047 PS_II_psb28 photosystem II reaction center protein Psb28. Members of this protein family are the Psb28 protein of photosystem II. Two different protein families, apparently without homology between them, have been designated PsbW. Cyanobacterial proteins previously designated PsbW are members of the family described here. However, while members of the plant PsbW family are not found (so far) in Cyanobacteria, members of the present family do occur in plants. We therefore support the alternative designation that has emerged for this protein family, Psp28, rather than PsbW.
Probab=23.16 E-value=1.1e+02 Score=23.54 Aligned_cols=31 Identities=16% Similarity=0.431 Sum_probs=24.8
Q ss_pred eEEEEEeecCCCCCcceEEEEEeCChHHHHHHH
Q 021295 83 VQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLL 115 (314)
Q Consensus 83 v~~v~i~~~~~~g~~rG~afV~F~~~~~a~~a~ 115 (314)
|.+|+|.+.++. ..+.|+..|+++.++++..
T Consensus 12 ip~VrLtRsrdg--~~g~a~f~F~~p~al~~~~ 42 (109)
T TIGR03047 12 IPDVRLTRSRDG--GTGTALFRFENPKALDKFN 42 (109)
T ss_pred CCceEEEEccCC--CceEEEEEECCchhhhhcc
Confidence 667899888754 5789999999999877743
No 372
>TIGR01033 DNA-binding regulatory protein, YebC/PmpR family. This model describes a minimally characterized protein family, restricted to bacteria excepting for some eukaryotic sequences that have possible transit peptides. YebC from E. coli is crystallized, and PA0964 from Pseudomonas aeruginosa has been shown to be a sequence-specific DNA-binding regulatory protein.
Probab=23.12 E-value=2.3e+02 Score=24.97 Aligned_cols=44 Identities=16% Similarity=0.202 Sum_probs=29.1
Q ss_pred cceEEEcCCCCCC--CHHHHHHHHhccCC-e---EEEEEeecCCCCCcceEEEEEeC
Q 021295 56 TKKIFVGGIPSSV--NEDEFKDFFMQFGD-V---QEHQIMRDHSTSRSRGFGFITFD 106 (314)
Q Consensus 56 ~~~l~V~nLp~~~--~e~~l~~~F~~~G~-v---~~v~i~~~~~~g~~rG~afV~F~ 106 (314)
...|+|--|..+. |..+|+.+|++++- + -.|..+.++ .+.|+|+
T Consensus 94 GvaiiVe~lTDN~nRt~~~ir~~f~K~gg~l~~~gsv~~~Fe~-------kG~i~~~ 143 (238)
T TIGR01033 94 GVAIIVECLTDNKNRTASEVRSAFNKNGGSLGEPGSVSYLFSR-------KGVIEVP 143 (238)
T ss_pred ceEEEEEEecCCHHhHHHHHHHHHHHcCCeeCCCCceeeeeec-------ceEEEEC
Confidence 3467777777765 66899999999863 3 235666554 4566664
No 373
>KOG3655 consensus Drebrins and related actin binding proteins [Cytoskeleton]
Probab=23.07 E-value=1.3e+02 Score=29.27 Aligned_cols=27 Identities=26% Similarity=0.491 Sum_probs=18.4
Q ss_pred CCCCCCCCcccEEEEEECCHHH--HHHHHH
Q 021295 1 MKDRKTGQPRGFGFVTYADPSV--VDKVIE 28 (314)
Q Consensus 1 m~d~~tg~~kG~aFV~f~~~~~--a~~A~~ 28 (314)
|+|.+|+.+| |.||.|.-+.. +++|..
T Consensus 70 v~D~~s~l~K-fvLI~W~GE~vp~~Rka~~ 98 (484)
T KOG3655|consen 70 VKDPMSGLPK-FVLINWIGEGVPVLRKAKC 98 (484)
T ss_pred ecCcccCCcc-eEEEEecCCccHHHhhhhh
Confidence 5777888777 88888865443 555554
No 374
>COG5594 Uncharacterized integral membrane protein [Function unknown]
Probab=23.00 E-value=44 Score=34.57 Aligned_cols=30 Identities=20% Similarity=0.727 Sum_probs=24.8
Q ss_pred CCCCcceEEEcCCCCCC-CHHHHHHHHhccC
Q 021295 52 KDFKTKKIFVGGIPSSV-NEDEFKDFFMQFG 81 (314)
Q Consensus 52 ~~~~~~~l~V~nLp~~~-~e~~l~~~F~~~G 81 (314)
....+++|+|..||.++ ++++|+++|.+..
T Consensus 204 ~~~ssRTvlis~LP~~~~~~e~L~~~~~kl~ 234 (827)
T COG5594 204 NNLSSRTVLISGLPSELRSDEELKELFDKLK 234 (827)
T ss_pred cCCCCceEEeecCChhhcCchhHHHHHhhcC
Confidence 34578999999999985 7788999999753
No 375
>cd04882 ACT_Bt0572_2 C-terminal ACT domain of a novel protein composed of just two ACT domains. Included in this CD is the C-terminal ACT domain of a novel protein composed of just two ACT domains, as seen in the yet uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related proteins. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=22.91 E-value=2.2e+02 Score=18.37 Aligned_cols=45 Identities=7% Similarity=0.152 Sum_probs=26.1
Q ss_pred HHHHHHHhccC-CeEEEEEeecCCCCCcceEEEEEeCChHHHHHHHHh
Q 021295 71 DEFKDFFMQFG-DVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAK 117 (314)
Q Consensus 71 ~~l~~~F~~~G-~v~~v~i~~~~~~g~~rG~afV~F~~~~~a~~a~~~ 117 (314)
.+|-++|.+++ .|..+....... ..+....|+.++.+.+.++|++
T Consensus 14 ~~i~~~l~~~~~nI~~i~~~~~~~--~~~~~v~~~ve~~~~~~~~L~~ 59 (65)
T cd04882 14 HEILQILSEEGINIEYMYAFVEKK--GGKALLIFRTEDIEKAIEVLQE 59 (65)
T ss_pred HHHHHHHHHCCCChhheEEEccCC--CCeEEEEEEeCCHHHHHHHHHH
Confidence 56667777764 566565543321 1233445666777777777766
No 376
>PRK00110 hypothetical protein; Validated
Probab=22.72 E-value=1.9e+02 Score=25.71 Aligned_cols=55 Identities=20% Similarity=0.312 Sum_probs=33.6
Q ss_pred cceEEEcCCCCCC--CHHHHHHHHhccC-CeE---EEEEeecCCCCCcceEEEEEeCC--h-HHHHHHHHh
Q 021295 56 TKKIFVGGIPSSV--NEDEFKDFFMQFG-DVQ---EHQIMRDHSTSRSRGFGFITFDT--E-QAVDDLLAK 117 (314)
Q Consensus 56 ~~~l~V~nLp~~~--~e~~l~~~F~~~G-~v~---~v~i~~~~~~g~~rG~afV~F~~--~-~~a~~a~~~ 117 (314)
.-.|.|--|..+. |..+|+.+|.+++ .+. .|..+.++ .+.|+|+. . +.++.||+.
T Consensus 94 GvaiiVe~lTDN~nRt~~~vR~~f~K~gG~l~~~Gsv~~~Fe~-------kG~i~~~~~~~d~~~e~aiea 157 (245)
T PRK00110 94 GVAIIVEALTDNRNRTAAEVRHAFSKNGGNLGETGSVSYMFDR-------KGVIVIEPLDEDELMEAALEA 157 (245)
T ss_pred CeEEEEEEecCCHHHHHHHHHHHHHhcCceeCCCcceEEEecc-------ceEEEeCCCCHHHHHHHHHhC
Confidence 3466777777765 5689999999985 332 36666654 45566642 3 344445553
No 377
>PRK15321 putative type III secretion system effector protein OrgC; Provisional
Probab=22.65 E-value=25 Score=26.25 Aligned_cols=49 Identities=22% Similarity=0.460 Sum_probs=25.6
Q ss_pred EcCCCCCCCHHHHHHHHhccCCeEEEEEeecCCCCCcceEEEEEeCChH-HHHHHHHh
Q 021295 61 VGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQ-AVDDLLAK 117 (314)
Q Consensus 61 V~nLp~~~~e~~l~~~F~~~G~v~~v~i~~~~~~g~~rG~afV~F~~~~-~a~~a~~~ 117 (314)
|..||+.++.+.||+...+. ++-..|++.+. -|||+|+... .++.+|++
T Consensus 26 l~~LP~la~S~~~KD~I~q~-----m~~F~dp~~G~---pAF~s~~QQ~~mlq~~l~k 75 (120)
T PRK15321 26 LLALPESASSETLKDSIYQE-----MNAFKDPNSGD---SAFVSFEQQTAMLQNMLAK 75 (120)
T ss_pred HHhCCcccCcHHHHHHHHHH-----HHHhCCCCCCC---cccccHHHHHHHHHHHHHh
Confidence 44567766666666543321 11122333443 4899998764 44455554
No 378
>PF14401 RLAN: RimK-like ATPgrasp N-terminal domain
Probab=22.61 E-value=1.8e+02 Score=23.75 Aligned_cols=60 Identities=17% Similarity=0.232 Sum_probs=37.9
Q ss_pred CcceEEEcCCCCCCCHHHHHHHHhccC-CeEEEEEeecCCCCCcceEEEEEeCChHHHHHH
Q 021295 55 KTKKIFVGGIPSSVNEDEFKDFFMQFG-DVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDL 114 (314)
Q Consensus 55 ~~~~l~V~nLp~~~~e~~l~~~F~~~G-~v~~v~i~~~~~~g~~rG~afV~F~~~~~a~~a 114 (314)
-+-+||++.-+..--++--+++|+.|- +|.+|.+.+....-+-+....|...+..+.+++
T Consensus 86 ~~l~iyFG~~~~~~~~~lAr~lFe~F~~PlL~v~~~~~~~~w~i~~i~~~~~~~l~~~e~~ 146 (153)
T PF14401_consen 86 FELSIYFGQTPDPRLERLARQLFERFPCPLLEVEFVRDDGKWRISSIKPLSLSELSEEEQD 146 (153)
T ss_pred EEEEEEECCCCCHHHHHHHHHHHHhCCCceEEEEEEecCCcEEEeeEeecChhhCCHHHHH
Confidence 345688887765555566678899884 677888877644334445566666555444443
No 379
>TIGR00452 methyltransferase, putative. Known examples to date are restricted to the proteobacteria.
Probab=22.58 E-value=1.6e+02 Score=27.10 Aligned_cols=15 Identities=13% Similarity=0.277 Sum_probs=12.7
Q ss_pred CCHHHHHHHHhccCC
Q 021295 68 VNEDEFKDFFMQFGD 82 (314)
Q Consensus 68 ~~e~~l~~~F~~~G~ 82 (314)
.+.++|++++++.|-
T Consensus 252 pS~~~L~~~L~~aGF 266 (314)
T TIGR00452 252 PSVSALKNWLEKVGF 266 (314)
T ss_pred CCHHHHHHHHHHCCC
Confidence 478999999999883
No 380
>cd03703 aeIF5B_II aeIF5B_II: This family represents the domain II of archeal and eukaryotic aeIF5B. aeIF5B is a homologue of prokaryotic Initiation Factor 2 (IF2). Disruption of the eIF5B gene (FUN12) in yeast causes a severe slow-growth phenotype, associated with a defect in translation. eIF5B has a function analogous to prokaryotic IF2 in mediating the joining of joining of 60S subunits. The eIF5B consists of three N-terminal domains (I, II, II) connected by a long helix to domain IV. Domain I is a G domain, domain II and IV are beta-barrels and domain III has a novel alpha-beta-alpha sandwich fold. The G domain and the beta-barrel domain II display a similar structure and arrangement to the homologous domains of EF1A, eEF1A and aeIF2gamma.
Probab=22.34 E-value=2.2e+02 Score=21.87 Aligned_cols=50 Identities=16% Similarity=0.217 Sum_probs=31.1
Q ss_pred CCHHHHHHHHhccCCeEEEE------EeecCCCCCcceEEEEEeCChHHHHHHHHhc
Q 021295 68 VNEDEFKDFFMQFGDVQEHQ------IMRDHSTSRSRGFGFITFDTEQAVDDLLAKG 118 (314)
Q Consensus 68 ~~e~~l~~~F~~~G~v~~v~------i~~~~~~g~~rG~afV~F~~~~~a~~a~~~l 118 (314)
.-.+||+ ...+|-.++++. |.-.-...-.-|-.|+.+.++++|+++++..
T Consensus 53 ~~~~E~r-~~~~~~~vk~v~aa~gvkI~~~gL~~v~aG~~~~vv~~e~~a~~~~~~~ 108 (110)
T cd03703 53 QPLKELR-VKSRFIHVKEVKAAAGVKILAPDLEKAIAGSPLLVVGPEDEIEELKEEV 108 (110)
T ss_pred CCchhhc-cccccceeeEEecCCCcEEEeCCCccccCCCEEEEECCHHHHHHHHHHH
Confidence 3345565 555665666544 5432122235577899999999999888763
No 381
>COG5507 Uncharacterized conserved protein [Function unknown]
Probab=22.27 E-value=85 Score=23.57 Aligned_cols=21 Identities=29% Similarity=0.316 Sum_probs=17.3
Q ss_pred ceEEEEEeCChHHHHHHHHhc
Q 021295 98 RGFGFITFDTEQAVDDLLAKG 118 (314)
Q Consensus 98 rG~afV~F~~~~~a~~a~~~l 118 (314)
--|+.++|.+.++.++|..++
T Consensus 66 VvFsW~~Y~skq~rDA~~~km 86 (117)
T COG5507 66 VVFSWIEYPSKQVRDAANAKM 86 (117)
T ss_pred EEEEEEEcCchhHHHHHHHHh
Confidence 348899999999998888763
No 382
>PLN02707 Soluble inorganic pyrophosphatase
Probab=22.16 E-value=57 Score=29.32 Aligned_cols=42 Identities=12% Similarity=0.209 Sum_probs=25.9
Q ss_pred HHHHHHHHhccCCeEEEEEeecCCCCCcceEEEE-EeCChHHHHHHHHhcCC
Q 021295 70 EDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFI-TFDTEQAVDDLLAKGNK 120 (314)
Q Consensus 70 e~~l~~~F~~~G~v~~v~i~~~~~~g~~rG~afV-~F~~~~~a~~a~~~l~~ 120 (314)
-++|+++|+.|=..+ .+ ..+-|+|+ +|.+.+.|.++|+..+.
T Consensus 207 l~~I~~fF~~YK~~e------GK---~~n~~~~~~~~~~~~~A~~vI~e~~~ 249 (267)
T PLN02707 207 LTAIRDWFRDYKIPD------GK---PANKFGLDNKPMDKDYALKVIEETNE 249 (267)
T ss_pred HHHHHHHHHHhcCCC------CC---ceeeccccCCcCCHHHHHHHHHHHHH
Confidence 378888888773221 00 01125554 78899999888876443
No 383
>PF00276 Ribosomal_L23: Ribosomal protein L23; InterPro: IPR013025 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This domain is found in both eukaryotic L25 and prokaryotic and eukaryotic L23 proteins.; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 3DF4_T 3DF2_T 4A1E_R 4A1A_R 4A1C_R 4A17_R 2HGU_W 2HGQ_W 1N88_A 2HGJ_W ....
Probab=22.01 E-value=1.1e+02 Score=22.52 Aligned_cols=55 Identities=11% Similarity=0.157 Sum_probs=33.6
Q ss_pred EEEcCCCCCCCHHHHHHHHhcc-C-CeEEEEEeecCC----CCCc------ceEEEEEeCChHHHHH
Q 021295 59 IFVGGIPSSVNEDEFKDFFMQF-G-DVQEHQIMRDHS----TSRS------RGFGFITFDTEQAVDD 113 (314)
Q Consensus 59 l~V~nLp~~~~e~~l~~~F~~~-G-~v~~v~i~~~~~----~g~~------rG~afV~F~~~~~a~~ 113 (314)
.|+-.++.+++..||++++++. + +|+.|..+.-+. .++. .--|+|++++.+.+..
T Consensus 22 ~~tF~V~~~atK~~Ik~aie~iy~V~V~~Vnt~~~~gk~kR~g~~~g~~~~~KKaiVtL~~~~~i~~ 88 (91)
T PF00276_consen 22 QYTFEVDPRATKTEIKEAIEKIYGVKVKKVNTMNYPGKKKRKGKFVGKTKDYKKAIVTLKEGDKIPL 88 (91)
T ss_dssp EEEEEETTTSTHHHHHHHHHHHHTSEEEEEEEEEETSEEEESSSCEEEE-EEEEEEEEESTTSCHHH
T ss_pred EEEEEEeCCCCHHHHHHHHHhhcCCCeeEEEEeEeCCCceEeCCccccCCCcEEEEEEeCCCCcccc
Confidence 3444567899999999999865 3 355555443320 1111 1258999988765443
No 384
>COG4009 Uncharacterized protein conserved in archaea [Function unknown]
Probab=22.00 E-value=82 Score=22.66 Aligned_cols=16 Identities=19% Similarity=0.291 Sum_probs=11.5
Q ss_pred EeCChHHHHHHHHhcC
Q 021295 104 TFDTEQAVDDLLAKGN 119 (314)
Q Consensus 104 ~F~~~~~a~~a~~~l~ 119 (314)
+.++.+++++-++.|+
T Consensus 58 ~~~s~eev~~ele~mg 73 (88)
T COG4009 58 EVESEEEVERELEDMG 73 (88)
T ss_pred ccCCHHHHHHHHHHhC
Confidence 3467788888887754
No 385
>PRK14448 acylphosphatase; Provisional
Probab=21.90 E-value=2.5e+02 Score=20.49 Aligned_cols=10 Identities=10% Similarity=0.205 Sum_probs=4.9
Q ss_pred CHHHHHHHHh
Q 021295 69 NEDEFKDFFM 78 (314)
Q Consensus 69 ~e~~l~~~F~ 78 (314)
++++|.+|+.
T Consensus 49 ~~~~v~~f~~ 58 (90)
T PRK14448 49 SDAQIAAFRD 58 (90)
T ss_pred CHHHHHHHHH
Confidence 4555554443
No 386
>TIGR00119 acolac_sm acetolactate synthase, small subunit. acetohydroxyacid synthase is a synonym.
Probab=21.87 E-value=3.4e+02 Score=22.22 Aligned_cols=51 Identities=14% Similarity=0.296 Sum_probs=33.1
Q ss_pred HHHHHHHHhccC-CeEEEEEeecCCCCCcceEEEEEeCChHHHHHHHHhcCCe
Q 021295 70 EDEFKDFFMQFG-DVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKL 121 (314)
Q Consensus 70 e~~l~~~F~~~G-~v~~v~i~~~~~~g~~rG~afV~F~~~~~a~~a~~~l~~~ 121 (314)
-..|-.+|++.+ .|..+.+......+.++ +.++.-.+.+.+++.+++|+++
T Consensus 15 L~rI~~lf~rrg~NI~Sl~v~~t~~~~~sr-iti~V~~d~~~i~qi~kQl~Kl 66 (157)
T TIGR00119 15 LSRVAGLFTRRGFNIESLTVGPTEDPDLSR-MTIVVVGDDKVLEQITKQLNKL 66 (157)
T ss_pred HHHHHHHHHhCCceEEEEEEeecCCCCEEE-EEEEEECCHHHHHHHHHHHhcC
Confidence 356778888776 57777776653334333 4444445677888888887764
No 387
>PHA03008 hypothetical protein; Provisional
Probab=21.86 E-value=2e+02 Score=24.69 Aligned_cols=38 Identities=24% Similarity=0.315 Sum_probs=31.1
Q ss_pred CCCcceEEEcCCCCCCCHHHHHHHHhccCCeEEEEEee
Q 021295 53 DFKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMR 90 (314)
Q Consensus 53 ~~~~~~l~V~nLp~~~~e~~l~~~F~~~G~v~~v~i~~ 90 (314)
+.....+||+|+..-.+..-|+-+|.+|-.+++|.+++
T Consensus 18 ~~~~d~~~~snit~~h~~n~i~~ff~~~d~~~~~ifvp 55 (234)
T PHA03008 18 DEICDIAFISNITHIHDHNIIKIFFDKFDDFDEIIFVP 55 (234)
T ss_pred cccccEEEEecccccccccHHHHHHhhccccceEEEcc
Confidence 34456789999999999999999999998888776554
No 388
>PRK13017 dihydroxy-acid dehydratase; Provisional
Probab=21.71 E-value=3.8e+02 Score=27.10 Aligned_cols=109 Identities=21% Similarity=0.214 Sum_probs=56.3
Q ss_pred CcccEEEEEECCHHHHHHHHHccC-ccC-CcEEEEeecCCCCCCCCCCCCcceEEEcCCCCCCCHHHHHHHHhccCCeEE
Q 021295 8 QPRGFGFVTYADPSVVDKVIEDTH-IIN-GKQVEIKRTIPKGAVGSKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQE 85 (314)
Q Consensus 8 ~~kG~aFV~f~~~~~a~~A~~~~~-~i~-g~~i~v~~~~~~~~~~~~~~~~~~l~V~nLp~~~~e~~l~~~F~~~G~v~~ 85 (314)
+.+|-|.| |+++++|.+|+.+.. ++. +..|-++..-|+.-.- .|+... -.+-..+...|- ++
T Consensus 420 ~~~GpA~V-F~see~a~~ai~~g~i~~~~gdVvVIRyeGPkGgPG-------------MpEm~~-l~~t~al~g~Gl-~~ 483 (596)
T PRK13017 420 AFEGRAVV-FDGPEDYHARIDDPALDIDEHCILVIRGAGPVGYPG-------------SAEVVN-MQPPAALLKRGI-RS 483 (596)
T ss_pred eEEEeEEE-ECCHHHHHHHHhCCCCCCCCCeEEEEeCCCCCCCCC-------------Ccchhh-chhHHHHHhCCC-Ce
Confidence 45565644 999999999998543 222 2244444444443211 111000 001122224454 77
Q ss_pred EEEeec-CCCCCcceEEEEEeCChHHHHHHHHhc---CC--eeeCCeEEEEee
Q 021295 86 HQIMRD-HSTSRSRGFGFITFDTEQAVDDLLAKG---NK--LELAGAQVEVKK 132 (314)
Q Consensus 86 v~i~~~-~~~g~~rG~afV~F~~~~~a~~a~~~l---~~--~~~~gr~l~V~~ 132 (314)
|-+++| +.++.++|++.....-+..+-=-|..+ +- +++..+.|.|..
T Consensus 484 VaLITDGRfSGat~G~~VgHVsPEAa~GGPIalV~dGD~I~IDi~~r~l~l~v 536 (596)
T PRK13017 484 LPCIGDGRQSGTSGSPSILNASPEAAVGGGLALLRTGDRIRIDLNKRRVDVLV 536 (596)
T ss_pred eEEEcccCCCCccCCCeeEEEChhhccCCcEEEEeCCCEEEEECCCCEEEEec
Confidence 777777 778888997776664433322222222 22 345667777753
No 389
>KOG2135 consensus Proteins containing the RNA recognition motif [General function prediction only]
Probab=21.70 E-value=43 Score=32.38 Aligned_cols=51 Identities=18% Similarity=0.357 Sum_probs=33.2
Q ss_pred CCCCHHHHHHHHhccCCeEEEEEeecCCCCCcceEEEEEeCChHHHHHHHHhcCCeee
Q 021295 66 SSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLEL 123 (314)
Q Consensus 66 ~~~~e~~l~~~F~~~G~v~~v~i~~~~~~g~~rG~afV~F~~~~~a~~a~~~l~~~~~ 123 (314)
.+..++.+..+|++++.+++..++.... ++--|.++ +.+.+++..++...|
T Consensus 207 ks~~s~~r~k~fee~g~~~r~el~p~~h-----g~~~vv~~--enan~~m~s~da~ei 257 (526)
T KOG2135|consen 207 KSRNSENRRKFFEEFGVLERGELCPTHH-----GCVPVVSK--ENANKTMKSEDAAEI 257 (526)
T ss_pred cccccHHhhhhhHhhceeeecccccccc-----ccceeEee--ccccccccCCcchhh
Confidence 3467788999999999998888876643 34444444 555555544433333
No 390
>PRK09756 PTS system N-acetylgalactosamine-specific transporter subunit IIB; Provisional
Probab=21.70 E-value=4.4e+02 Score=21.54 Aligned_cols=17 Identities=29% Similarity=0.430 Sum_probs=11.9
Q ss_pred EEEEEECCHHHHHHHHH
Q 021295 12 FGFVTYADPSVVDKVIE 28 (314)
Q Consensus 12 ~aFV~f~~~~~a~~A~~ 28 (314)
-.||.|+++++|.++++
T Consensus 81 ~vlvl~~~~~da~~l~~ 97 (158)
T PRK09756 81 KIFLICRTPQTVRKLVE 97 (158)
T ss_pred eEEEEECCHHHHHHHHH
Confidence 36777777777777766
No 391
>COG0318 CaiC Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II [Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism]
Probab=21.40 E-value=4.2e+02 Score=26.04 Aligned_cols=52 Identities=13% Similarity=0.227 Sum_probs=37.0
Q ss_pred CCCCHHHHHHHHhccCCeEEEEEeecCCC-CCcceEEEEEeC-------ChHHHHHHHHh
Q 021295 66 SSVNEDEFKDFFMQFGDVQEHQIMRDHST-SRSRGFGFITFD-------TEQAVDDLLAK 117 (314)
Q Consensus 66 ~~~~e~~l~~~F~~~G~v~~v~i~~~~~~-g~~rG~afV~F~-------~~~~a~~a~~~ 117 (314)
.++..+||++++.++-.|.++.++--++. -..+..|+|+.. +++++.+.++.
T Consensus 432 ~ni~p~eiE~~l~~~~~V~~aavvgvpd~~~Ge~~~a~v~~~~~~~~~~~~~~i~~~~~~ 491 (534)
T COG0318 432 ENIYPEEIEAVLAEHPAVAEAAVVGVPDERWGERVVAVVVLKPGGDAELTAEELRAFLRK 491 (534)
T ss_pred eEECHHHHHHHHHhCCCcceEEEEeCCCCccCceEEEEEEEcCCCCCCCCHHHHHHHHHh
Confidence 35677999999999988888777644332 345778999886 45666666664
No 392
>PF00564 PB1: PB1 domain; InterPro: IPR000270 The Phox and Bem1p domain, is present in many eukaryotic cytoplasmic signalling proteins. The domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pairs associate.; GO: 0005515 protein binding; PDB: 1IPG_A 1IP9_A 2KFK_A 1WMH_A 1VD2_A 1WI0_A 1OEY_C 1PQS_A 1Q1O_A 1TZ1_A ....
Probab=21.39 E-value=2.9e+02 Score=19.19 Aligned_cols=53 Identities=19% Similarity=0.504 Sum_probs=33.8
Q ss_pred cCCCCCCCHHHHHHHHh-ccCCe-EEEEEe-ecCCCCCcceEEEEEeCChHHHHHHHHhcCC
Q 021295 62 GGIPSSVNEDEFKDFFM-QFGDV-QEHQIM-RDHSTSRSRGFGFITFDTEQAVDDLLAKGNK 120 (314)
Q Consensus 62 ~nLp~~~~e~~l~~~F~-~~G~v-~~v~i~-~~~~~g~~rG~afV~F~~~~~a~~a~~~l~~ 120 (314)
-.++..++-++|++..+ +|+.. ..+.|. .|.+ + -.|...+.++++.|++.++.
T Consensus 16 ~~~~~~~s~~~L~~~i~~~~~~~~~~~~l~Y~D~d-----g-D~V~i~sd~Dl~~a~~~~~~ 71 (84)
T PF00564_consen 16 ISLPSDVSFDDLRSKIREKFGLLDEDFQLKYKDED-----G-DLVTISSDEDLQEAIEQAKE 71 (84)
T ss_dssp EEECSTSHHHHHHHHHHHHHTTSTSSEEEEEEETT-----S-SEEEESSHHHHHHHHHHHHH
T ss_pred EEcCCCCCHHHHHHHHHHHhCCCCccEEEEeeCCC-----C-CEEEeCCHHHHHHHHHHHHh
Confidence 45667778888877764 35442 223332 2221 1 48999999999999997643
No 393
>KOG4000 consensus Uncharacterized conserved protein [Function unknown]
Probab=21.35 E-value=3.9e+02 Score=23.63 Aligned_cols=23 Identities=35% Similarity=0.553 Sum_probs=11.8
Q ss_pred CCCcccEEEE--EECCHHHHHHHHH
Q 021295 6 TGQPRGFGFV--TYADPSVVDKVIE 28 (314)
Q Consensus 6 tg~~kG~aFV--~f~~~~~a~~A~~ 28 (314)
...+|||--| ++.+..+|+.+..
T Consensus 27 nraP~gf~~I~~~~dd~~dADLWrD 51 (291)
T KOG4000|consen 27 NRAPKGFSAISRTYDDDSDADLWRD 51 (291)
T ss_pred ccCCCccchheeecccccchhhhhc
Confidence 4567777633 3344445554443
No 394
>COG1691 NCAIR mutase (PurE)-related proteins [General function prediction only]
Probab=21.32 E-value=94 Score=27.26 Aligned_cols=24 Identities=25% Similarity=0.506 Sum_probs=11.1
Q ss_pred HHHHH-HHhccCCeEEEEEeecCCC
Q 021295 71 DEFKD-FFMQFGDVQEHQIMRDHST 94 (314)
Q Consensus 71 ~~l~~-~F~~~G~v~~v~i~~~~~~ 94 (314)
++|+. .|+..+++..+++.++..|
T Consensus 22 ~~i~~~~~~~~~~~~k~D~~R~~Rt 46 (254)
T COG1691 22 EQIKSLAFESLGEFAKLDIHREKRT 46 (254)
T ss_pred HHHhhhhhhhhchhhhccchhhccC
Confidence 44443 3444555555555544433
No 395
>cd00127 DSPc Dual specificity phosphatases (DSP); Ser/Thr and Tyr protein phosphatases. Structurally similar to tyrosine-specific phosphatases but with a shallower active site cleft and a distinctive active site signature motif, HCxxGxxR. Characterized as VHR- or Cdc25-like.
Probab=21.29 E-value=1.9e+02 Score=22.22 Aligned_cols=20 Identities=20% Similarity=0.577 Sum_probs=14.6
Q ss_pred cceEEEcCCCCCCCHHHHHH
Q 021295 56 TKKIFVGGIPSSVNEDEFKD 75 (314)
Q Consensus 56 ~~~l~V~nLp~~~~e~~l~~ 75 (314)
...|||+++|...+.+.|++
T Consensus 6 ~~~l~~g~~~~~~d~~~L~~ 25 (139)
T cd00127 6 TPGLYLGSYPAASDKELLKK 25 (139)
T ss_pred cCCeEECChhHhcCHHHHHH
Confidence 35699999998776666654
No 396
>PF01696 Adeno_E1B_55K: Adenovirus EB1 55K protein / large t-antigen; InterPro: IPR002612 This family consists of adenovirus E1B 55 kDa protein or large t-antigen. E1B 55 kDa binds p53 the tumor suppressor protein converting it from a transcriptional activator which responds to damaged DNA in to an unregulated repressor of genes with a p53 binding site []. This protects the virus against p53 induced host antiviral responses and prevents apoptosis as induced by the adenovirus E1A protein []. The E1B region of adenovirus encodes two proteins E1B 55 kDa, the large t-antigen as found in this family and E1B 19 kDa IPR002924 from INTERPRO, the small t-antigen. Both of these proteins inhibit E1A induced apoptosis.
Probab=21.25 E-value=1.9e+02 Score=27.51 Aligned_cols=52 Identities=12% Similarity=0.107 Sum_probs=29.1
Q ss_pred CCCCCCHHHHHHHHhcc--CCeEEEEEeecCCCCCcceEEEEEeCChHHHHHHHHhcCCeeeC
Q 021295 64 IPSSVNEDEFKDFFMQF--GDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELA 124 (314)
Q Consensus 64 Lp~~~~e~~l~~~F~~~--G~v~~v~i~~~~~~g~~rG~afV~F~~~~~a~~a~~~l~~~~~~ 124 (314)
=|..+++.||++.|++. ...++..+ .-.....++-.|+.++||+.-.++.|.
T Consensus 17 r~e~v~~~ev~~~~~~~~~~~~~~~~F---------Eqvkt~~~~P~eDle~~I~~haKVaL~ 70 (386)
T PF01696_consen 17 RPEQVTWQEVEAEFQEGDMFLLDKYSF---------EQVKTYWMEPGEDLEEAIRQHAKVALR 70 (386)
T ss_pred CCCeEEHHHHHhhhhccccccccceee---------EeEEEEEcCCCcCHHHHHHhcCEEEeC
Confidence 34567888888888432 11111111 113344555667888888876665554
No 397
>PLN02373 soluble inorganic pyrophosphatase
Probab=21.20 E-value=2.8e+02 Score=23.58 Aligned_cols=37 Identities=14% Similarity=0.249 Sum_probs=25.1
Q ss_pred HHHHHHHHhccCCeEEEEEeecCCCCCcceEEEEEeCChHHHHHHHHhc
Q 021295 70 EDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKG 118 (314)
Q Consensus 70 e~~l~~~F~~~G~v~~v~i~~~~~~g~~rG~afV~F~~~~~a~~a~~~l 118 (314)
-++|++||+.|=.++ .|-+.+..|.+.+.|.++|++.
T Consensus 138 l~~I~~fF~~YK~le------------gK~v~v~g~~~~~~A~~~I~~~ 174 (188)
T PLN02373 138 LAEIRRFFEDYKKNE------------NKEVAVNDFLPAEAAIEAIQYS 174 (188)
T ss_pred HHHHHHHHHHhcccC------------CCeEEeCCccCHHHHHHHHHHH
Confidence 377889999874322 1224567788888888888753
No 398
>cd02983 P5_C P5 family, C-terminal redox inactive TRX-like domain; P5 is a protein disulfide isomerase (PDI)-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain). Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. The C-terminal domain is likely involved in substrate binding, similar to the b and b' domains of PDI.
Probab=21.19 E-value=3.6e+02 Score=21.10 Aligned_cols=10 Identities=0% Similarity=0.321 Sum_probs=8.3
Q ss_pred ccEEEEEECC
Q 021295 10 RGFGFVTYAD 19 (314)
Q Consensus 10 kG~aFV~f~~ 19 (314)
+++|+|-|-.
T Consensus 20 ~~~C~i~~l~ 29 (130)
T cd02983 20 KQLCIIAFLP 29 (130)
T ss_pred CCeEEEEEcC
Confidence 7899999865
No 399
>PF05036 SPOR: Sporulation related domain; InterPro: IPR007730 This 70 residue domain is composed of two 35 residue repeats that are found in bacterial proteins involved in sporulation and cell division, such as FtsN, CwlM and RlpA. This repeat might be involved in binding peptidoglycan. FtsN is an essential cell division protein with a simple bitopic topology: a short N-terminal cytoplasmic segment fused to a large carboxy periplasmic domain through a single transmembrane domain. The repeats lie at the periplasmic C terminus, which has an RNP-like fold []. FtsN localises to the septum ring complex. The CwlM protein is a cell wall hydrolase, where the C-terminal region, including the repeats, determines substrate specificity []. RlpA is a rare lipoprotein A protein that may be important for cell division. Its N-terminal cysteine may be attached to thioglyceride and N-fatty acyl residues [].; PDB: 1X60_A 1UTA_A.
Probab=21.10 E-value=22 Score=24.41 Aligned_cols=17 Identities=18% Similarity=0.217 Sum_probs=14.3
Q ss_pred EEeCChHHHHHHHHhcC
Q 021295 103 ITFDTEQAVDDLLAKGN 119 (314)
Q Consensus 103 V~F~~~~~a~~a~~~l~ 119 (314)
-.|.+.++|++++++|.
T Consensus 49 G~f~~~~~A~~~~~~l~ 65 (76)
T PF05036_consen 49 GPFSSREEAEAALRKLK 65 (76)
T ss_dssp CCECTCCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHh
Confidence 47899999999988876
No 400
>KOG3062 consensus RNA polymerase II elongator associated protein [General function prediction only]
Probab=20.88 E-value=2.2e+02 Score=25.20 Aligned_cols=34 Identities=24% Similarity=0.466 Sum_probs=24.4
Q ss_pred EEEcCCCCC---CCHHHHHHHHhccCCeEEEEEeecC
Q 021295 59 IFVGGIPSS---VNEDEFKDFFMQFGDVQEHQIMRDH 92 (314)
Q Consensus 59 l~V~nLp~~---~~e~~l~~~F~~~G~v~~v~i~~~~ 92 (314)
|.|.+||.+ +...+|+++|..-+.-..|.|+.|.
T Consensus 4 Vvi~G~P~SGKstrA~~L~~~l~~~~~K~~v~ii~de 40 (281)
T KOG3062|consen 4 VVICGLPCSGKSTRAVELREALKERGTKQSVRIIDDE 40 (281)
T ss_pred EEEeCCCCCCchhHHHHHHHHHHhhcccceEEEechh
Confidence 567788865 5678999999887653367777663
No 401
>cd04879 ACT_3PGDH-like ACT_3PGDH-like CD includes the C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH). ACT_3PGDH-like: The ACT_3PGDH-like CD includes the C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH), with or without an extended C-terminal (xct) region found in various bacteria, archaea, fungi, and plants. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In bacteria, 3PGDH is feedback controlled by the end product L-serine in an allosteric manner. In the Escherichia coli homotetrameric enzyme, the interface at adjacent ACT (regulatory) domains couples to create an extended beta-sheet. Each regulatory interface forms two serine-binding sites. The mechanism by which serine transmits inhibition to the active
Probab=20.86 E-value=2.5e+02 Score=18.13 Aligned_cols=48 Identities=10% Similarity=0.180 Sum_probs=25.7
Q ss_pred CCHHHHHHHHhccC-CeEEEEEeecCCCCCcceEEEEEeCChHHHHHHHHhc
Q 021295 68 VNEDEFKDFFMQFG-DVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKG 118 (314)
Q Consensus 68 ~~e~~l~~~F~~~G-~v~~v~i~~~~~~g~~rG~afV~F~~~~~a~~a~~~l 118 (314)
-.-.+|.++|++++ .|+.+.+..+.. .......+++++. ...+.+++|
T Consensus 11 g~l~~i~~~l~~~~~nI~~~~~~~~~~--~~~~~~~~~v~~~-~~~~l~~~l 59 (71)
T cd04879 11 GVIGKVGTILGEHGINIAAMQVGRKEK--GGIAYMVLDVDSP-VPEEVLEEL 59 (71)
T ss_pred CHHHHHHHHHHhcCCCeeeEEEeccCC--CCEEEEEEEcCCC-CCHHHHHHH
Confidence 34577888888775 566676654321 1233445555554 333444443
No 402
>cd05992 PB1 The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as a noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants.
Probab=20.82 E-value=2.9e+02 Score=19.01 Aligned_cols=48 Identities=13% Similarity=0.387 Sum_probs=31.4
Q ss_pred CCCCHHHHHHHHh-ccCCe-EEEEEe-ecCCCCCcceEEEEEeCChHHHHHHHHhcC
Q 021295 66 SSVNEDEFKDFFM-QFGDV-QEHQIM-RDHSTSRSRGFGFITFDTEQAVDDLLAKGN 119 (314)
Q Consensus 66 ~~~~e~~l~~~F~-~~G~v-~~v~i~-~~~~~g~~rG~afV~F~~~~~a~~a~~~l~ 119 (314)
..++-++|++... +|... ..+.|. .|. .+ -+|+..+.++++.|++.+.
T Consensus 19 ~~~s~~~L~~~i~~~~~~~~~~~~l~y~D~-----e~-d~v~l~sd~Dl~~a~~~~~ 69 (81)
T cd05992 19 RSISFEDLRSKIAEKFGLDAVSFKLKYPDE-----DG-DLVTISSDEDLEEAIEEAR 69 (81)
T ss_pred CCCCHHHHHHHHHHHhCCCCCcEEEEeeCC-----CC-CEEEeCCHHHHHHHHHHHh
Confidence 7788888887764 44432 233332 221 11 6899999999999999854
No 403
>PRK07868 acyl-CoA synthetase; Validated
Probab=20.76 E-value=5.8e+02 Score=27.53 Aligned_cols=57 Identities=14% Similarity=0.047 Sum_probs=37.5
Q ss_pred CCCHHHHHHHHhccCCeEEEEEeecCCCCCcceEEEEEeCC-----hHHHHHHHHhcCCeee
Q 021295 67 SVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDT-----EQAVDDLLAKGNKLEL 123 (314)
Q Consensus 67 ~~~e~~l~~~F~~~G~v~~v~i~~~~~~g~~rG~afV~F~~-----~~~a~~a~~~l~~~~~ 123 (314)
.+.-+||++++.++..|.++.++-........-.|||+... ++++.+.++.|....+
T Consensus 868 ~I~p~EIE~~L~~hp~V~~aaVvg~~d~~~~~~~a~Vv~~~~~~~~~~~L~~~l~~l~~y~v 929 (994)
T PRK07868 868 PVYTEPVTDALGRIGGVDLAVTYGVEVGGRQLAVAAVTLRPGAAITAADLTEALASLPVGLG 929 (994)
T ss_pred eEcHHHHHHHHhcCCCeeEEEEEeecCCCCceEEEEEEeCCCCcCCHHHHHHHHHhCCCCcC
Confidence 36779999999999889887766443333345678887643 4555666665544443
No 404
>COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair]
Probab=20.68 E-value=82 Score=29.59 Aligned_cols=27 Identities=11% Similarity=0.300 Sum_probs=14.6
Q ss_pred ECCHHHHHHHHHccCccCCcEEEEeec
Q 021295 17 YADPSVVDKVIEDTHIINGKQVEIKRT 43 (314)
Q Consensus 17 f~~~~~a~~A~~~~~~i~g~~i~v~~~ 43 (314)
|.+.+..+-|+++.....+..|.+...
T Consensus 216 ~~~d~~L~~Av~~ark~~g~~IylTAT 242 (441)
T COG4098 216 FSDDQSLQYAVKKARKKEGATIYLTAT 242 (441)
T ss_pred ccCCHHHHHHHHHhhcccCceEEEecC
Confidence 445555566666544555566655443
No 405
>COG5584 Predicted small secreted protein [Function unknown]
Probab=20.67 E-value=1.9e+02 Score=21.64 Aligned_cols=32 Identities=19% Similarity=0.234 Sum_probs=24.0
Q ss_pred CCCCCCCHHHHHHHHhccCCeEEEEEeecCCC
Q 021295 63 GIPSSVNEDEFKDFFMQFGDVQEHQIMRDHST 94 (314)
Q Consensus 63 nLp~~~~e~~l~~~F~~~G~v~~v~i~~~~~~ 94 (314)
|++.+..-+-+++.|+++++|+-.+|...++.
T Consensus 29 ~is~e~alk~vk~afk~~mnI~GSwI~~~pe~ 60 (103)
T COG5584 29 NISRENALKVVKEAFKQFMNIKGSWIVYEPEV 60 (103)
T ss_pred ccChhHHHHHHHHHhcccCCcceeEEEEeccc
Confidence 34455555778899999999998888866543
No 406
>PRK06545 prephenate dehydrogenase; Validated
Probab=20.64 E-value=3.6e+02 Score=25.12 Aligned_cols=63 Identities=14% Similarity=0.222 Sum_probs=43.9
Q ss_pred CcceEEEcCCCCCC-CHHHHHHHHhccC-CeEEEEEeecCCCCCcceEEEEEeCChHHHHHHHHhcCC
Q 021295 55 KTKKIFVGGIPSSV-NEDEFKDFFMQFG-DVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNK 120 (314)
Q Consensus 55 ~~~~l~V~nLp~~~-~e~~l~~~F~~~G-~v~~v~i~~~~~~g~~rG~afV~F~~~~~a~~a~~~l~~ 120 (314)
+...|+|- +|... .-..|..++...+ .|++|+|...++ ...|..-+.|.+.+++++|.+.+..
T Consensus 289 ~~~~~~v~-v~d~pg~~~~~~~~~~~~~i~i~~~~i~~~~~--~~~g~~~~~~~~~~~~~~~~~~~~~ 353 (359)
T PRK06545 289 SFYDLYVD-VPDEPGVIARVTAILGEEGISIENLRILEARE--DIHGVLQISFKNEEDRERAKALLEE 353 (359)
T ss_pred cceEEEEe-CCCCCCHHHHHHHHHHHcCCCeecceeeeccC--CcCceEEEEeCCHHHHHHHHHHHHh
Confidence 34566664 44433 3356666666665 588999987753 4678889999999999999887644
No 407
>PRK04405 prsA peptidylprolyl isomerase; Provisional
Probab=20.62 E-value=1.7e+02 Score=26.68 Aligned_cols=39 Identities=10% Similarity=0.228 Sum_probs=26.8
Q ss_pred CCCHHHHHHHHhccCCeEEEEEeecCCCCCcceEEEEEeCChHHHHHHHHhcC
Q 021295 67 SVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGN 119 (314)
Q Consensus 67 ~~~e~~l~~~F~~~G~v~~v~i~~~~~~g~~rG~afV~F~~~~~a~~a~~~l~ 119 (314)
.+|++||+++|..+.+ .++ ...|.+++.+.|+++++++.
T Consensus 128 ~Vtd~ei~~~y~~~~~--~~~------------v~hIlv~~~~~A~~v~~~l~ 166 (298)
T PRK04405 128 KVTNSQLKKAWKSYQP--KVT------------VQHILVSKKSTAETVIKKLK 166 (298)
T ss_pred CCCHHHHHHHHHHhhh--hEE------------EEEEEecChHHHHHHHHHHH
Confidence 5799999999987532 121 34556667788888887753
No 408
>COG0002 ArgC Acetylglutamate semialdehyde dehydrogenase [Amino acid transport and metabolism]
Probab=20.57 E-value=2.3e+02 Score=26.59 Aligned_cols=27 Identities=11% Similarity=0.220 Sum_probs=18.0
Q ss_pred CCCCCCHHHHHHHHhcc-CCeEEEEEee
Q 021295 64 IPSSVNEDEFKDFFMQF-GDVQEHQIMR 90 (314)
Q Consensus 64 Lp~~~~e~~l~~~F~~~-G~v~~v~i~~ 90 (314)
|...++++||+++|++| -.-.-|+|+.
T Consensus 253 l~~~~t~~~i~~~y~~~Y~~epfVrv~~ 280 (349)
T COG0002 253 LKDLVTLEELHAAYEEFYAGEPFVRVVP 280 (349)
T ss_pred cCCCCCHHHHHHHHHHHhCCCCeEEEec
Confidence 44448999999999876 3333455554
No 409
>KOG3432 consensus Vacuolar H+-ATPase V1 sector, subunit F [Energy production and conversion]
Probab=20.55 E-value=91 Score=23.91 Aligned_cols=24 Identities=25% Similarity=0.358 Sum_probs=17.9
Q ss_pred CCCCCHHHHHHHHhccCCeEEEEE
Q 021295 65 PSSVNEDEFKDFFMQFGDVQEHQI 88 (314)
Q Consensus 65 p~~~~e~~l~~~F~~~G~v~~v~i 88 (314)
...+|+++|++.|.+|-.=++|.|
T Consensus 42 ~~~Tt~~eiedaF~~f~~RdDIaI 65 (121)
T KOG3432|consen 42 DSKTTVEEIEDAFKSFTARDDIAI 65 (121)
T ss_pred eccCCHHHHHHHHHhhccccCeEE
Confidence 458999999999999865444433
No 410
>PF11230 DUF3029: Protein of unknown function (DUF3029); InterPro: IPR016905 Members of this family are homologs to enzymes known to undergo activation by a radical SAM protein to create an active site glycyl radical. This family appears to be activated by the YjjW radical SAM protein, usually encoded by an adjacent gene.
Probab=20.47 E-value=65 Score=31.13 Aligned_cols=58 Identities=16% Similarity=0.336 Sum_probs=38.0
Q ss_pred cccEEEEEECCHHHHHHHHHccCccCCcEEEEeecCCCCCCCCCCCCcceEEEcCCCC-------CCCHHHHHHHHhcc
Q 021295 9 PRGFGFVTYADPSVVDKVIEDTHIINGKQVEIKRTIPKGAVGSKDFKTKKIFVGGIPS-------SVNEDEFKDFFMQF 80 (314)
Q Consensus 9 ~kG~aFV~f~~~~~a~~A~~~~~~i~g~~i~v~~~~~~~~~~~~~~~~~~l~V~nLp~-------~~~e~~l~~~F~~~ 80 (314)
.+|..|++.+.+++..+|+..+..+-- . ..++.+.-|||++|+. .++|+++++.++.|
T Consensus 61 ~qGs~fLeL~pp~DldeAln~L~IlY~-------H-------VPSVT~~PVylG~LD~lL~Pfv~~l~eee~~~klk~F 125 (487)
T PF11230_consen 61 KQGSEFLELEPPKDLDEALNNLLILYH-------H-------VPSVTSFPVYLGQLDRLLEPFVQGLDEEEAYKKLKLF 125 (487)
T ss_pred hccchhcccCCcccHHHHHHhhhHHhh-------c-------CCccCCccceeccHhhhhcccccCCCHHHHHHHHHHH
Confidence 468889999998888888875432211 1 1234456788888764 24788887665554
No 411
>PF12007 DUF3501: Protein of unknown function (DUF3501); InterPro: IPR021890 This family of proteins is functionally uncharacterised. This protein is found in bacteria and archaea. Proteins in this family are about 200 amino acids in length. The structure of protein of unknown function (YP_111841.1) from B. pseudomallei has been solved. ; PDB: 3FJV_B.
Probab=20.45 E-value=1.2e+02 Score=25.88 Aligned_cols=46 Identities=13% Similarity=0.136 Sum_probs=30.7
Q ss_pred CHHHHHHHHhccCCeEEEEEeecCCCCCcceEEEEEeCChHHHHHHHHhcCCe
Q 021295 69 NEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKL 121 (314)
Q Consensus 69 ~e~~l~~~F~~~G~v~~v~i~~~~~~g~~rG~afV~F~~~~~a~~a~~~l~~~ 121 (314)
.+++|.+.++.|.++. ++ ...-+-.-||++.++++.+..|..|.++
T Consensus 65 ~~~~I~~Ei~aYnpLi-----P~--~~~l~ATl~IE~~d~~~r~~~L~~L~Gi 110 (192)
T PF12007_consen 65 DEEGIQEEIDAYNPLI-----PD--GGNLKATLMIEIPDEDERRRELARLVGI 110 (192)
T ss_dssp SHHHHHHHHHHHGGGS---------SSEEEEEEEE--SSHHHHHHHHHHCTTG
T ss_pred CHHHHHHHHHHhcccC-----CC--CCcEEEEEEEEcCCHHHHHHHHHHhcCc
Confidence 5677888887776543 11 2223445699999999999999998774
No 412
>PF05929 Phage_GPO: Phage capsid scaffolding protein (GPO) serine peptidase; InterPro: IPR009228 This entry is represented by Bacteriophage P2, GpO. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several bacteriophage capsid scaffolding protein (GpO) and some related bacterial sequences. GpO is thought to function in both the assembly of proheads and the cleavage of GpN [].; GO: 0019069 viral capsid assembly
Probab=20.42 E-value=94 Score=28.11 Aligned_cols=91 Identities=13% Similarity=0.222 Sum_probs=42.7
Q ss_pred ccCCcEEEEeecCCCCCCCCCCCCcceEEEcCCCCCCCHHHHHH-----HHhccCCeEEEEEeecCC--CCCcceEEEEE
Q 021295 32 IINGKQVEIKRTIPKGAVGSKDFKTKKIFVGGIPSSVNEDEFKD-----FFMQFGDVQEHQIMRDHS--TSRSRGFGFIT 104 (314)
Q Consensus 32 ~i~g~~i~v~~~~~~~~~~~~~~~~~~l~V~nLp~~~~e~~l~~-----~F~~~G~v~~v~i~~~~~--~g~~rG~afV~ 104 (314)
.+++|.|..+|....-..-....-.-+|++ |+++- .|..||.|..|+.-.... .++.+=||-|
T Consensus 12 TvDGR~I~r~wi~~mAe~Ydp~~Y~ArI~~---------EH~r~~~p~~~f~~~GdV~alkaEe~~d~~~gkl~L~A~i- 81 (276)
T PF05929_consen 12 TVDGREIERQWIEQMAETYDPEVYGARIWP---------EHIRSYWPDSPFGNYGDVLALKAEEIDDGGKGKLALFAQI- 81 (276)
T ss_pred CCCCCCCCHHHHHHHHHhcChhhcceeecH---------HHhcccCCccccccccceEEEEEEEcccCCCCeEEEEEEe-
Confidence 466666655543322222222233334443 44443 478899999887765533 3443434433
Q ss_pred eCChHHHHHHHHhcCCeeeCCeEEEEeecC
Q 021295 105 FDTEQAVDDLLAKGNKLELAGAQVEVKKAE 134 (314)
Q Consensus 105 F~~~~~a~~a~~~l~~~~~~gr~l~V~~a~ 134 (314)
+-.+.+.++.+. ....+....|.-+++.
T Consensus 82 -~P~~~Lv~~nk~-gQKlftSiEi~pnFa~ 109 (276)
T PF05929_consen 82 -DPNDELVELNKA-GQKLFTSIEIDPNFAD 109 (276)
T ss_pred -CCCHHHHHHHHc-CCEEEEEEEecccccc
Confidence 333444444333 3333333333333333
No 413
>TIGR01638 Atha_cystat_rel Arabidopsis thaliana cystatin-related protein. This model represents a family similar in sequence and probably homologous to a large family of cysteine proteinase inhibitors, or cystatins, as described by pfam model pfam00031. Cystatins may help plants resist attack by insects.
Probab=20.30 E-value=1.5e+02 Score=22.03 Aligned_cols=30 Identities=13% Similarity=0.362 Sum_probs=19.4
Q ss_pred CeEEEEEeecCCCCCcceEEEEEeCChHHH
Q 021295 82 DVQEHQIMRDHSTSRSRGFGFITFDTEQAV 111 (314)
Q Consensus 82 ~v~~v~i~~~~~~g~~rG~afV~F~~~~~a 111 (314)
+|+-|+|++.....-..-..||+|+-.+..
T Consensus 33 ~lEfV~vVrAn~~~~~g~~~yITF~Ard~~ 62 (92)
T TIGR01638 33 NLELVEVVRANYRGGAKSKSYITFEARDKP 62 (92)
T ss_pred eEEEEEEEEEEeeccceEEEEEEEEEecCC
Confidence 567777777655554555688999654433
No 414
>TIGR03432 yjhG_yagF probable dehydratase, YjhG/YagF family. This homolog of dihydroxy-acid dehydratases has an odd, sparse distribution. Members are found in two Acidobacteria, two Planctomycetes, Bacillus clausii KSM-K16, and (in two copies each) in strains K12-MG1655 and W3110 of Escherichia coli. The local context is not well conserved, but a few members are adjacent to homologs of the gluconate:H+ symporter (see TIGR00791).
Probab=20.30 E-value=3.6e+02 Score=27.45 Aligned_cols=82 Identities=13% Similarity=0.149 Sum_probs=45.5
Q ss_pred cccEEEEEECCHHHHHHHHHccCccCCcEEEEeecCCCCCCCCCCCCcceEEEcCCCCCCCHHHHHHHHhccCCeEEEEE
Q 021295 9 PRGFGFVTYADPSVVDKVIEDTHIINGKQVEIKRTIPKGAVGSKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQI 88 (314)
Q Consensus 9 ~kG~aFV~f~~~~~a~~A~~~~~~i~g~~i~v~~~~~~~~~~~~~~~~~~l~V~nLp~~~~e~~l~~~F~~~G~v~~v~i 88 (314)
.+|=| +.|+++++|.+|+.+...-.+.-|-++..-|+-. - .|+... +...+...+.-++|-+
T Consensus 463 ~~GpA-rVFdsee~a~~AI~~g~I~~GdVvVIRyeGPkG~-G-------------MpEml~---~t~al~g~glG~~VAL 524 (640)
T TIGR03432 463 HTGPA-RVFSSEKSAIAAIKHGKIEAGDVLVLIGRGPSGT-G-------------MEETYQ---VTSALKYLSFGKHVAL 524 (640)
T ss_pred EEEeE-EEECCHHHHHHHHhCCCCCCCcEEEEeCCCCCCC-C-------------chhhhc---chhhHhhcCCCCeEEE
Confidence 34444 4599999999999976544555555555555431 1 111000 1111122222345667
Q ss_pred eec-CCCCCcceEEEEEeCCh
Q 021295 89 MRD-HSTSRSRGFGFITFDTE 108 (314)
Q Consensus 89 ~~~-~~~g~~rG~afV~F~~~ 108 (314)
+.| |.++.++|+|+....-+
T Consensus 525 ITDGRFSG~S~G~~IGHVsPE 545 (640)
T TIGR03432 525 ITDARFSGVSTGACIGHVGPE 545 (640)
T ss_pred ecccCcCCCCCCCEEEEEChh
Confidence 766 77888898877665433
No 415
>PRK01688 histidinol-phosphate aminotransferase; Provisional
Probab=20.22 E-value=1.9e+02 Score=26.62 Aligned_cols=52 Identities=15% Similarity=0.302 Sum_probs=29.1
Q ss_pred CcceEEEcCCCCC----CCHHHHHHHHhccCCeEEEEEeecCCCCCcceEEEEEeCChHHHHHHHH
Q 021295 55 KTKKIFVGGIPSS----VNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLA 116 (314)
Q Consensus 55 ~~~~l~V~nLp~~----~~e~~l~~~F~~~G~v~~v~i~~~~~~g~~rG~afV~F~~~~~a~~a~~ 116 (314)
.++.|||.|...- ++.++|+++.+.+-+ .+.|+.| -||++|...+++...++
T Consensus 145 ~~~lv~l~nPnNPTG~~~~~~~l~~l~~~~~~--~~~vivD--------Eay~~f~~~~s~~~~~~ 200 (351)
T PRK01688 145 GVKVVYVCSPNNPTGNLINPQDLRTLLELTRG--KAIVVAD--------EAYIEFCPQASLAGWLA 200 (351)
T ss_pred CCcEEEEeCCCCCCCCCCCHHHHHHHHHhCCC--CcEEEEE--------CchhhcCCCCChHHHHh
Confidence 4566777654332 477888888876532 2345556 35677764333333333
No 416
>PF10469 AKAP7_NLS: AKAP7 2'5' RNA ligase-like domain; InterPro: IPR019510 This entry represents the N-terminal nuclear localisation signal-containing domain found in the cyclic AMP-dependent protein kinase A (PKA) anchor protein, AKAP7. This protein anchors PKA for its role in regulating PKA-mediated gene transcription in both somatic cells and oocytes []. This domain carries the nuclear localisation signal (NLS) KKRKK, that indicates the cellular destiny of this anchor protein []. Binding to the regulatory subunits RI and RII of PKA is mediated via the RI-RII subunit-binding domain at the C terminus.
Probab=20.20 E-value=4.8e+02 Score=21.97 Aligned_cols=29 Identities=14% Similarity=0.355 Sum_probs=15.7
Q ss_pred CCCcceEEEcCCCCCCC-------HHHHHHHHhccCC
Q 021295 53 DFKTKKIFVGGIPSSVN-------EDEFKDFFMQFGD 82 (314)
Q Consensus 53 ~~~~~~l~V~nLp~~~~-------e~~l~~~F~~~G~ 82 (314)
....+.||+. +..+.. .+.|++.|.+.|-
T Consensus 96 ~~~~~VLya~-v~~~~~~~~L~~l~~~l~~~f~~~Gl 131 (209)
T PF10469_consen 96 PSKARVLYAK-VSEDSNSERLQELANKLRERFQEAGL 131 (209)
T ss_pred CCcceEEEEc-ccccchHHHHHHHHHHHHHHHHHcCC
Confidence 3445778874 333222 2456667777653
Done!