Query 021295
Match_columns 314
No_of_seqs 358 out of 2253
Neff 8.6
Searched_HMMs 29240
Date Mon Mar 25 15:36:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021295.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/021295hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1l3k_A Heterogeneous nuclear r 99.9 3E-27 1E-31 200.7 16.3 139 1-140 46-187 (196)
2 2qfj_A FBP-interacting repress 99.9 7E-27 2.4E-31 201.4 14.5 141 1-141 61-210 (216)
3 2cjk_A Nuclear polyadenylated 99.9 1.6E-27 5.6E-32 197.2 8.8 131 1-136 36-166 (167)
4 2kn4_A Immunoglobulin G-bindin 99.9 7.9E-26 2.7E-30 186.3 16.4 133 8-140 11-154 (158)
5 3md3_A Nuclear and cytoplasmic 99.9 1.7E-25 5.7E-30 184.5 17.2 131 2-135 34-166 (166)
6 1b7f_A Protein (SXL-lethal pro 99.9 9.5E-26 3.3E-30 186.6 15.5 129 1-133 36-168 (168)
7 4f02_A Polyadenylate-binding p 99.9 2.5E-26 8.6E-31 198.6 12.4 134 1-138 48-183 (213)
8 2g4b_A Splicing factor U2AF 65 99.9 6.8E-26 2.3E-30 188.3 13.7 127 4-134 45-172 (172)
9 2yh0_A Splicing factor U2AF 65 99.9 7.9E-26 2.7E-30 192.2 14.3 136 3-138 44-196 (198)
10 1fxl_A Paraneoplastic encephal 99.9 2.2E-25 7.6E-30 183.9 14.8 129 1-133 35-167 (167)
11 1fje_B Nucleolin RBD12, protei 99.9 1.3E-25 4.6E-30 187.4 13.5 129 1-136 45-174 (175)
12 3nmr_A Cugbp ELAV-like family 99.9 2.5E-24 8.6E-29 179.1 11.7 129 2-134 37-175 (175)
13 3smz_A Protein raver-1, ribonu 99.9 1.3E-23 4.4E-28 188.9 15.4 136 1-138 128-266 (284)
14 2ghp_A U4/U6 snRNA-associated 99.9 2.4E-23 8.3E-28 187.9 15.3 130 6-136 155-291 (292)
15 3pgw_A U1-A; protein-RNA compl 99.9 7.6E-23 2.6E-27 183.7 16.8 125 5-134 47-281 (282)
16 2i2y_A Fusion protein consists 99.9 6E-23 2.1E-27 167.7 12.2 126 6-137 9-149 (150)
17 2lea_A Serine/arginine-rich sp 99.9 2.4E-23 8.1E-28 167.2 8.0 125 12-139 6-130 (135)
18 3tyt_A Heterogeneous nuclear r 99.9 2.2E-22 7.5E-27 172.9 14.0 123 9-133 41-204 (205)
19 1h2v_Z 20 kDa nuclear CAP bind 99.9 3.6E-22 1.2E-26 164.1 13.3 87 52-138 35-121 (156)
20 4fxv_A ELAV-like protein 1; RN 99.9 3E-22 1E-26 152.1 11.7 83 53-135 16-98 (99)
21 2adc_A Polypyrimidine tract-bi 99.9 7.2E-22 2.5E-26 172.4 15.4 122 10-136 72-228 (229)
22 3smz_A Protein raver-1, ribonu 99.9 1.2E-21 4.1E-26 176.0 16.9 122 7-138 54-177 (284)
23 3sde_A Paraspeckle component 1 99.9 9.5E-22 3.3E-26 175.0 13.3 121 7-138 55-181 (261)
24 1qm9_A Polypyrimidine tract-bi 99.9 7.6E-22 2.6E-26 167.9 11.9 122 10-136 41-197 (198)
25 2dgo_A Cytotoxic granule-assoc 99.9 1.2E-20 4E-25 147.0 16.2 90 51-140 10-99 (115)
26 2cpz_A CUG triplet repeat RNA- 99.9 3.7E-21 1.3E-25 149.9 12.8 91 51-141 20-110 (115)
27 3s8s_A Histone-lysine N-methyl 99.9 2.8E-21 9.5E-26 149.6 11.9 84 54-137 4-87 (110)
28 2ghp_A U4/U6 snRNA-associated 99.9 3E-21 1E-25 174.1 13.5 118 9-138 80-199 (292)
29 2lxi_A RNA-binding protein 10; 99.9 1E-21 3.6E-26 146.7 7.9 83 56-138 1-85 (91)
30 1whw_A Hypothetical protein ri 99.9 1E-20 3.4E-25 143.3 13.3 88 52-139 4-91 (99)
31 2cq0_A Eukaryotic translation 99.9 7.5E-21 2.6E-25 145.1 12.6 90 51-140 10-99 (103)
32 2dgs_A DAZ-associated protein 99.8 8.5E-21 2.9E-25 143.7 12.2 89 51-140 5-93 (99)
33 2cqd_A RNA-binding region cont 99.8 2.7E-20 9.1E-25 145.2 15.1 89 50-139 11-99 (116)
34 2dnm_A SRP46 splicing factor; 99.8 6.2E-21 2.1E-25 145.6 11.2 89 52-140 9-97 (103)
35 1rk8_A CG8781-PA, CG8781-PA pr 99.8 5.2E-21 1.8E-25 158.7 11.4 126 15-140 11-156 (165)
36 1x4h_A RNA-binding protein 28; 99.8 1.7E-20 5.9E-25 145.0 13.6 90 51-140 10-105 (111)
37 1x5u_A Splicing factor 3B subu 99.8 1.2E-20 4.1E-25 144.5 12.4 89 51-139 10-98 (105)
38 2cqb_A Peptidyl-prolyl CIS-tra 99.8 7.7E-21 2.6E-25 144.7 11.1 89 52-140 8-96 (102)
39 2dnz_A Probable RNA-binding pr 99.8 1.2E-20 4.2E-25 141.7 11.8 86 54-139 3-88 (95)
40 2do4_A Squamous cell carcinoma 99.8 2.3E-20 7.8E-25 141.6 13.3 87 51-138 12-98 (100)
41 2cph_A RNA binding motif prote 99.8 1.8E-20 6.1E-25 143.9 12.2 91 50-140 9-101 (107)
42 2cqc_A Arginine/serine-rich sp 99.8 2.7E-20 9.4E-25 139.7 12.9 85 51-135 10-94 (95)
43 1x5s_A Cold-inducible RNA-bind 99.8 9.2E-21 3.2E-25 144.3 10.4 88 52-139 8-95 (102)
44 2dh8_A DAZ-associated protein 99.8 2.1E-20 7.1E-25 143.1 12.3 89 50-139 10-98 (105)
45 2cpf_A RNA binding motif prote 99.8 1.6E-20 5.4E-25 141.9 11.4 87 54-140 3-92 (98)
46 1u6f_A Tcubp1, RNA-binding pro 99.8 4.1E-20 1.4E-24 148.7 14.4 91 49-139 35-125 (139)
47 2lkz_A RNA-binding protein 5; 99.8 4.2E-21 1.4E-25 144.5 7.9 84 52-135 5-94 (95)
48 3md1_A Nuclear and cytoplasmic 99.8 2.3E-20 7.7E-25 136.6 11.7 82 56-137 1-82 (83)
49 2d9p_A Polyadenylate-binding p 99.8 2.2E-20 7.4E-25 142.6 11.9 89 51-141 10-98 (103)
50 3bs9_A Nucleolysin TIA-1 isofo 99.8 1.8E-20 6.1E-25 138.4 11.1 83 54-136 4-86 (87)
51 2dnh_A Bruno-like 5, RNA bindi 99.8 3.2E-20 1.1E-24 142.1 12.8 88 52-140 11-101 (105)
52 1x5t_A Splicing factor 3B subu 99.8 1.8E-20 6.2E-25 141.0 10.9 86 54-139 3-89 (96)
53 2dgp_A Bruno-like 4, RNA bindi 99.8 1.6E-20 5.6E-25 143.9 10.6 89 51-139 8-99 (106)
54 3p5t_L Cleavage and polyadenyl 99.8 3.2E-21 1.1E-25 143.7 6.3 84 57-140 2-87 (90)
55 2e5h_A Zinc finger CCHC-type a 99.8 3.7E-20 1.3E-24 138.8 11.9 84 51-134 11-94 (94)
56 2dng_A Eukaryotic translation 99.8 5.8E-20 2E-24 140.2 13.1 86 52-139 11-96 (103)
57 2cpe_A RNA-binding protein EWS 99.8 3.1E-20 1.1E-24 144.1 11.8 89 51-139 10-106 (113)
58 2do0_A HnRNP M, heterogeneous 99.8 1.2E-19 4.2E-24 140.9 15.0 87 52-139 11-97 (114)
59 1p27_B RNA-binding protein 8A; 99.8 2.2E-20 7.6E-25 143.2 10.6 87 52-138 19-105 (106)
60 3mdf_A Peptidyl-prolyl CIS-tra 99.8 2.5E-20 8.4E-25 137.0 10.3 82 53-134 4-85 (85)
61 3pgw_S U1-70K; protein-RNA com 99.8 1.1E-20 3.6E-25 179.8 10.6 87 52-138 98-184 (437)
62 2cq3_A RNA-binding protein 9; 99.8 9.8E-20 3.4E-24 138.9 13.7 89 51-141 10-98 (103)
63 2cqi_A Nucleolysin TIAR; RNA r 99.8 1.4E-19 5E-24 137.9 14.2 87 51-139 10-96 (103)
64 1wi8_A EIF-4B, eukaryotic tran 99.8 6E-20 2.1E-24 140.4 12.0 86 52-139 11-97 (104)
65 2div_A TRNA selenocysteine ass 99.8 4.2E-20 1.4E-24 139.8 11.0 86 52-137 5-95 (99)
66 3ex7_B RNA-binding protein 8A; 99.8 2.3E-20 8E-25 147.6 9.7 89 51-139 17-105 (126)
67 2fy1_A RNA-binding motif prote 99.8 7.4E-20 2.5E-24 142.9 12.4 85 53-138 4-88 (116)
68 2x1f_A MRNA 3'-END-processing 99.8 5.3E-20 1.8E-24 138.6 10.9 85 55-139 1-85 (96)
69 2hgn_A Heterogeneous nuclear r 99.8 3.6E-21 1.2E-25 154.8 4.7 124 10-137 1-124 (139)
70 2kxn_B Transformer-2 protein h 99.8 3.2E-20 1.1E-24 147.7 10.2 88 51-138 41-128 (129)
71 1x4b_A Heterogeneous nuclear r 99.8 3.8E-20 1.3E-24 144.3 10.4 87 52-139 23-109 (116)
72 2cqg_A TDP-43, TAR DNA-binding 99.8 2.4E-19 8.1E-24 136.7 14.6 87 51-139 10-96 (103)
73 2hgl_A HNRPF protein, heteroge 99.8 1.4E-20 4.9E-25 150.8 8.0 123 10-137 1-126 (136)
74 4f25_A Polyadenylate-binding p 99.8 5.2E-20 1.8E-24 143.5 10.9 83 55-139 4-86 (115)
75 2la6_A RNA-binding protein FUS 99.8 6.6E-20 2.3E-24 138.9 11.2 85 50-134 7-99 (99)
76 2jrs_A RNA-binding protein 39; 99.8 6.4E-20 2.2E-24 141.4 11.0 88 50-137 20-107 (108)
77 2dhg_A TRNA selenocysteine ass 99.8 9.4E-20 3.2E-24 139.2 11.8 87 52-139 5-93 (104)
78 3ucg_A Polyadenylate-binding p 99.8 7.4E-20 2.5E-24 135.6 10.8 82 55-137 5-86 (89)
79 1oo0_B CG8781-PA, drosophila Y 99.8 5.9E-20 2E-24 141.8 10.7 87 52-138 22-108 (110)
80 2ywk_A Putative RNA-binding pr 99.8 9.1E-20 3.1E-24 136.9 11.2 84 51-135 11-94 (95)
81 3s7r_A Heterogeneous nuclear r 99.8 1.5E-19 5.3E-24 133.4 12.2 81 52-133 7-87 (87)
82 4a8x_A RNA-binding protein wit 99.8 5.8E-20 2E-24 135.8 9.7 84 54-137 2-86 (88)
83 2dgw_A Probable RNA-binding pr 99.8 2.3E-19 7.8E-24 133.7 12.9 83 52-137 6-88 (91)
84 2cqp_A RNA-binding protein 12; 99.8 4.7E-20 1.6E-24 139.3 9.3 85 52-136 11-95 (98)
85 2dgx_A KIAA0430 protein; RRM d 99.8 1.4E-19 4.8E-24 136.4 11.9 83 53-138 6-92 (96)
86 2rs2_A Musashi-1, RNA-binding 99.8 1.3E-19 4.3E-24 140.0 11.8 87 51-138 20-106 (109)
87 2khc_A Testis-specific RNP-typ 99.8 7.1E-20 2.4E-24 143.1 10.4 83 52-134 36-118 (118)
88 1x4a_A Splicing factor, argini 99.8 2.3E-19 7.7E-24 138.3 13.0 85 51-138 17-101 (109)
89 3q2s_C Cleavage and polyadenyl 99.8 5.5E-21 1.9E-25 166.9 4.2 83 55-137 67-151 (229)
90 1sjq_A Polypyrimidine tract-bi 99.8 8.9E-20 3E-24 139.1 10.1 82 53-140 13-96 (105)
91 2m2b_A RNA-binding protein 10; 99.8 3.4E-20 1.2E-24 147.9 8.1 90 51-141 18-113 (131)
92 2cq4_A RNA binding motif prote 99.8 4E-20 1.4E-24 143.8 8.0 86 52-138 21-106 (114)
93 3ulh_A THO complex subunit 4; 99.8 2E-19 6.9E-24 138.0 11.7 82 52-134 25-106 (107)
94 2cpi_A CCR4-NOT transcription 99.8 1.6E-19 5.4E-24 139.8 10.9 87 51-137 10-102 (111)
95 2kt5_A RNA and export factor-b 99.8 4.8E-19 1.7E-23 139.7 13.4 89 52-141 31-119 (124)
96 1s79_A Lupus LA protein; RRM, 99.8 1.3E-19 4.5E-24 138.4 9.6 82 52-135 7-88 (103)
97 3ns6_A Eukaryotic translation 99.8 2.6E-20 9.1E-25 141.5 5.7 84 54-137 4-94 (100)
98 2dgv_A HnRNP M, heterogeneous 99.8 2.4E-19 8.2E-24 133.7 10.9 84 53-138 5-88 (92)
99 2ek1_A RNA-binding protein 12; 99.8 5.3E-20 1.8E-24 138.2 7.1 82 54-135 13-94 (95)
100 2cq1_A PTB-like protein L; RRM 99.8 4E-19 1.4E-23 135.1 12.0 84 52-141 11-96 (101)
101 1x4c_A Splicing factor, argini 99.8 7.1E-19 2.4E-23 135.4 13.6 80 53-139 12-96 (108)
102 1p1t_A Cleavage stimulation fa 99.8 6.5E-20 2.2E-24 140.0 7.6 86 53-138 5-90 (104)
103 2dis_A Unnamed protein product 99.8 2.8E-19 9.5E-24 137.7 11.3 87 53-139 5-95 (109)
104 2jwn_A Embryonic polyadenylate 99.8 1.6E-19 5.4E-24 142.4 9.9 84 54-138 34-117 (124)
105 3n9u_C Cleavage and polyadenyl 99.8 2.1E-19 7.3E-24 147.5 11.0 82 55-136 54-137 (156)
106 2dgu_A Heterogeneous nuclear r 99.8 9.6E-19 3.3E-23 133.4 13.9 81 52-140 7-87 (103)
107 1wg5_A Heterogeneous nuclear r 99.8 3.2E-19 1.1E-23 136.4 10.7 85 52-138 11-96 (104)
108 1x4d_A Matrin 3; structural ge 99.8 2.6E-19 8.8E-24 136.2 9.7 83 52-140 11-96 (102)
109 2fc9_A NCL protein; structure 99.8 6.8E-19 2.3E-23 133.7 12.1 84 52-139 11-94 (101)
110 1wez_A HnRNP H', FTP-3, hetero 99.8 2.1E-19 7.2E-24 137.0 9.2 83 52-137 11-93 (102)
111 2ad9_A Polypyrimidine tract-bi 99.8 3.3E-19 1.1E-23 139.2 10.3 83 52-140 27-111 (119)
112 2fc8_A NCL protein; structure 99.8 5.5E-19 1.9E-23 134.4 11.3 85 51-138 10-94 (102)
113 2cpx_A Hypothetical protein FL 99.8 1.1E-19 3.6E-24 141.5 6.8 89 52-140 21-109 (115)
114 2mss_A Protein (musashi1); RNA 99.8 1.4E-19 4.9E-24 129.7 6.8 75 58-133 1-75 (75)
115 2dnq_A RNA-binding protein 4B; 99.8 8.3E-19 2.8E-23 130.4 11.1 79 53-139 5-83 (90)
116 1uaw_A Mouse-musashi-1; RNP-ty 99.8 1.4E-19 4.8E-24 130.4 6.6 76 57-133 1-76 (77)
117 2cpy_A RNA-binding protein 12; 99.8 2.4E-19 8.1E-24 139.5 8.3 84 52-137 11-95 (114)
118 1x4e_A RNA binding motif, sing 99.8 7E-20 2.4E-24 134.7 4.8 81 54-134 3-83 (85)
119 2dnn_A RNA-binding protein 12; 99.8 4.5E-19 1.6E-23 136.7 9.6 79 55-136 15-93 (109)
120 2dgt_A RNA-binding protein 30; 99.8 1.8E-18 6.1E-23 129.1 12.5 82 51-140 5-86 (92)
121 3r27_A HnRNP L, heterogeneous 99.8 7.3E-19 2.5E-23 132.7 10.3 81 52-138 17-99 (100)
122 1wex_A Hypothetical protein (r 99.8 1.5E-18 5E-23 132.8 12.1 83 52-140 11-95 (104)
123 2j76_E EIF-4B, EIF4B, eukaryot 99.8 1.3E-19 4.5E-24 137.6 6.2 85 51-137 14-99 (100)
124 2wbr_A GW182, gawky, LD47780P; 99.8 4.9E-19 1.7E-23 129.4 8.9 74 55-134 6-79 (89)
125 2ki2_A SS-DNA binding protein 99.8 7.8E-20 2.7E-24 135.9 4.6 83 57-140 2-84 (90)
126 2nlw_A Eukaryotic translation 99.8 1.2E-18 4E-23 133.6 11.3 85 52-138 11-102 (105)
127 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.8 1.3E-18 4.6E-23 139.7 12.1 82 52-133 59-140 (140)
128 1x5o_A RNA binding motif, sing 99.8 8.8E-19 3E-23 136.0 10.7 84 52-136 21-112 (114)
129 2err_A Ataxin-2-binding protei 99.8 6.5E-19 2.2E-23 135.9 9.7 85 51-137 24-108 (109)
130 2db1_A Heterogeneous nuclear r 99.8 5.8E-19 2E-23 138.2 9.3 84 52-137 13-99 (118)
131 1why_A Hypothetical protein ri 99.8 1.5E-18 5.1E-23 130.8 11.1 80 52-137 13-94 (97)
132 1wf1_A RNA-binding protein RAL 99.8 1.4E-18 4.6E-23 134.2 10.8 97 34-139 6-103 (110)
133 1x4g_A Nucleolysin TIAR; struc 99.8 1.9E-18 6.6E-23 133.1 11.4 83 52-140 21-103 (109)
134 1fj7_A Nucleolin RBD1, protein 99.8 1.1E-19 3.9E-24 138.0 4.2 85 52-138 13-97 (101)
135 1wel_A RNA-binding protein 12; 99.8 1.8E-19 6E-24 142.3 5.3 85 52-137 21-105 (124)
136 2dnp_A RNA-binding protein 14; 99.8 2.5E-18 8.4E-23 127.8 11.2 79 52-138 5-83 (90)
137 2cpj_A Non-POU domain-containi 99.8 1.8E-18 6.1E-23 130.9 10.5 82 52-139 11-92 (99)
138 2e5j_A Methenyltetrahydrofolat 99.8 1.6E-18 5.5E-23 130.7 9.8 82 52-138 15-96 (97)
139 2jvr_A Nucleolar protein 3; RN 99.8 1.6E-18 5.5E-23 134.0 9.3 79 54-136 26-105 (111)
140 2cpd_A Apobec-1 stimulating pr 99.8 9.5E-18 3.2E-22 126.9 13.5 80 51-138 10-91 (99)
141 2e5g_A U6 snRNA-specific termi 99.8 4.7E-18 1.6E-22 127.4 11.4 82 53-140 5-86 (94)
142 1x4f_A Matrin 3; structural ge 99.8 1.5E-18 5.1E-23 134.0 8.7 83 52-140 21-106 (112)
143 2jvo_A Nucleolar protein 3; nu 99.8 2.9E-18 1E-22 132.1 10.1 82 49-138 24-105 (108)
144 2ytc_A PRE-mRNA-splicing facto 99.8 5.2E-18 1.8E-22 124.5 11.0 77 52-134 8-85 (85)
145 2hvz_A Splicing factor, argini 99.8 2.1E-18 7.3E-23 130.9 9.0 78 57-139 1-78 (101)
146 2xs2_A Deleted in azoospermia- 99.8 1.4E-18 4.9E-23 132.1 8.0 85 52-139 5-89 (102)
147 1iqt_A AUF1, heterogeneous nuc 99.8 5.8E-19 2E-23 126.5 5.4 75 58-133 1-75 (75)
148 2dha_A FLJ20171 protein; RRM d 99.8 1E-18 3.5E-23 137.6 7.0 82 54-137 21-106 (123)
149 2la4_A Nuclear and cytoplasmic 99.8 3.3E-18 1.1E-22 129.8 9.3 78 53-136 24-101 (101)
150 2lmi_A GRSF-1, G-rich sequence 99.7 6E-19 2E-23 135.6 5.2 84 52-137 7-93 (107)
151 1x5p_A Negative elongation fac 99.7 2.6E-17 8.8E-22 124.1 14.0 82 51-140 10-91 (97)
152 1sjr_A Polypyrimidine tract-bi 99.7 9.8E-18 3.3E-22 137.5 12.4 83 54-140 44-128 (164)
153 2cqh_A IGF-II mRNA-binding pro 99.7 3.3E-18 1.1E-22 127.9 8.7 80 53-139 5-86 (93)
154 2lcw_A RNA-binding protein FUS 99.6 8.6E-20 2.9E-24 142.3 0.0 85 53-137 4-96 (116)
155 2xnq_A Nuclear polyadenylated 99.7 9.7E-18 3.3E-22 126.5 11.1 78 51-136 17-95 (97)
156 1fjc_A Nucleolin RBD2, protein 99.7 4.9E-18 1.7E-22 127.6 9.3 83 51-138 11-93 (96)
157 2a3j_A U1 small nuclear ribonu 99.7 6.3E-18 2.1E-22 133.8 10.3 83 53-138 26-112 (127)
158 2hgm_A HNRPF protein, heteroge 99.7 1.2E-18 4.3E-23 137.5 6.0 83 52-137 38-122 (126)
159 2f3j_A RNA and export factor b 99.7 4.3E-18 1.5E-22 142.7 9.5 85 54-139 86-170 (177)
160 2krb_A Eukaryotic translation 99.7 1.8E-18 6.2E-23 126.0 6.2 74 56-131 1-81 (81)
161 4f02_A Polyadenylate-binding p 99.7 1.1E-17 3.7E-22 144.2 11.7 85 53-137 12-96 (213)
162 2e44_A Insulin-like growth fac 99.7 9.5E-18 3.2E-22 126.0 9.5 82 52-137 11-93 (96)
163 2voo_A Lupus LA protein; RNA-b 99.7 2.4E-17 8.2E-22 140.0 12.4 117 19-137 63-188 (193)
164 3beg_B Splicing factor, argini 99.7 6.5E-18 2.2E-22 131.6 8.1 76 54-136 14-94 (115)
165 1nu4_A U1A RNA binding domain; 99.7 5.6E-18 1.9E-22 127.5 7.3 83 53-138 5-91 (97)
166 3d2w_A TAR DNA-binding protein 99.7 1.1E-17 3.7E-22 124.2 8.5 80 52-138 7-86 (89)
167 2kvi_A Nuclear polyadenylated 99.7 7.1E-18 2.4E-22 126.9 7.5 79 52-138 6-85 (96)
168 3lqv_A PRE-mRNA branch site pr 99.7 1.5E-17 5.2E-22 129.2 9.6 82 53-137 5-86 (115)
169 2cq2_A Hypothetical protein LO 99.7 1.9E-17 6.5E-22 128.0 9.6 82 52-139 21-109 (114)
170 1wg1_A KIAA1579 protein, homol 99.7 2.5E-17 8.5E-22 121.9 9.8 77 55-138 4-80 (88)
171 1whx_A Hypothetical protein ri 99.7 1.1E-17 3.9E-22 129.4 8.3 78 55-138 9-86 (111)
172 1fxl_A Paraneoplastic encephal 99.7 4.8E-17 1.6E-21 133.6 11.8 83 56-138 2-84 (167)
173 2j8a_A Histone-lysine N-methyl 99.7 2.9E-17 9.8E-22 128.0 9.7 79 57-135 3-95 (136)
174 1l3k_A Heterogeneous nuclear r 99.7 4.4E-17 1.5E-21 137.7 11.7 87 51-138 8-94 (196)
175 1b7f_A Protein (SXL-lethal pro 99.7 3.9E-17 1.3E-21 134.5 10.7 84 55-138 2-85 (168)
176 3zzy_A Polypyrimidine tract-bi 99.7 1.1E-16 3.6E-21 126.6 12.5 84 54-142 26-112 (130)
177 1wf0_A TDP-43, TAR DNA-binding 99.7 1.4E-17 4.9E-22 123.1 7.1 79 54-139 3-81 (88)
178 3egn_A RNA-binding protein 40; 99.7 9.5E-18 3.3E-22 135.6 5.4 88 52-139 41-133 (143)
179 2dnl_A Cytoplasmic polyadenyla 99.7 5.2E-17 1.8E-21 126.2 9.3 80 54-136 6-88 (114)
180 2e5i_A Heterogeneous nuclear r 99.7 2.9E-16 9.9E-21 123.4 12.8 80 55-140 24-106 (124)
181 2hzc_A Splicing factor U2AF 65 99.7 1.2E-16 4.1E-21 117.6 8.9 72 54-132 4-86 (87)
182 3u1l_A PRE-mRNA-splicing facto 99.7 5.3E-17 1.8E-21 141.6 8.0 112 22-139 99-232 (240)
183 3md3_A Nuclear and cytoplasmic 99.7 2.9E-16 9.9E-21 128.8 11.0 81 57-138 1-81 (166)
184 2qfj_A FBP-interacting repress 99.7 1.7E-16 6E-21 136.1 9.4 83 55-137 27-109 (216)
185 2pe8_A Splicing factor 45; RRM 99.7 4E-16 1.4E-20 119.3 10.4 82 54-135 6-93 (105)
186 2diu_A KIAA0430 protein; struc 99.7 3.9E-16 1.3E-20 115.1 9.8 77 55-141 7-89 (96)
187 2bz2_A Negative elongation fac 99.7 2.7E-16 9.4E-21 123.4 8.9 80 52-139 35-114 (121)
188 3tyt_A Heterogeneous nuclear r 99.6 6.4E-16 2.2E-20 132.5 10.2 78 55-137 3-81 (205)
189 3nmr_A Cugbp ELAV-like family 99.6 5.6E-16 1.9E-20 128.3 9.2 84 55-138 2-90 (175)
190 2cjk_A Nuclear polyadenylated 99.6 6.2E-16 2.1E-20 127.2 9.0 80 55-136 2-81 (167)
191 2dit_A HIV TAT specific factor 99.6 4.9E-15 1.7E-19 114.6 12.5 84 52-139 11-105 (112)
192 3pgw_A U1-A; protein-RNA compl 99.6 3E-15 1E-19 134.0 11.7 84 52-138 5-92 (282)
193 2adc_A Polypyrimidine tract-bi 99.6 3.7E-15 1.3E-19 129.7 10.3 82 52-138 30-112 (229)
194 3v4m_A Splicing factor U2AF 65 99.6 6.1E-15 2.1E-19 112.7 8.5 82 54-135 3-96 (105)
195 3sde_A Paraspeckle component 1 99.6 9.3E-15 3.2E-19 129.7 10.3 81 50-136 16-96 (261)
196 1fje_B Nucleolin RBD12, protei 99.6 1.9E-15 6.5E-20 125.5 5.2 85 52-138 9-93 (175)
197 1qm9_A Polypyrimidine tract-bi 99.6 6.5E-15 2.2E-19 124.8 8.1 80 55-139 2-82 (198)
198 3ue2_A Poly(U)-binding-splicin 99.5 1.9E-14 6.6E-19 112.2 8.8 81 55-135 19-108 (118)
199 2d9o_A DNAJ (HSP40) homolog, s 99.5 8.6E-14 2.9E-18 105.2 12.1 67 66-139 27-93 (100)
200 2g4b_A Splicing factor U2AF 65 99.5 5.3E-14 1.8E-18 116.1 10.2 77 55-138 3-90 (172)
201 1jmt_A Splicing factor U2AF 35 99.5 8.4E-15 2.9E-19 111.8 4.6 72 61-133 20-103 (104)
202 2yh0_A Splicing factor U2AF 65 99.5 9.8E-14 3.3E-18 117.2 10.5 77 55-138 3-90 (198)
203 3tht_A Alkylated DNA repair pr 99.4 3.1E-13 1.1E-17 123.7 10.0 80 49-134 11-97 (345)
204 3s6e_A RNA-binding protein 39; 99.4 1.1E-12 3.8E-17 101.5 9.3 78 54-135 5-92 (114)
205 1owx_A Lupus LA protein, SS-B, 99.2 2.6E-11 9E-16 94.1 8.1 77 52-134 14-94 (121)
206 2dnr_A Synaptojanin-1; RRM dom 99.2 4.7E-11 1.6E-15 87.2 8.2 73 55-136 6-86 (91)
207 4f25_A Polyadenylate-binding p 99.1 5.5E-11 1.9E-15 92.0 4.3 66 7-72 42-113 (115)
208 1ufw_A Synaptojanin 2; RNP dom 99.0 4E-10 1.4E-14 82.7 6.8 72 54-134 13-93 (95)
209 3dxb_A Thioredoxin N-terminall 99.0 1.3E-09 4.3E-14 94.0 11.0 68 68-135 141-212 (222)
210 2lxi_A RNA-binding protein 10; 98.8 1.1E-08 3.8E-13 75.5 6.7 49 1-49 35-86 (91)
211 2l9w_A U4/U6 snRNA-associated- 98.7 7.7E-08 2.6E-12 72.0 9.9 74 54-133 19-97 (117)
212 2lkz_A RNA-binding protein 5; 98.6 2E-08 6.9E-13 74.8 4.4 45 1-45 44-94 (95)
213 4fxv_A ELAV-like protein 1; RN 98.6 3.1E-08 1.1E-12 74.3 4.9 45 1-45 52-98 (99)
214 2cqg_A TDP-43, TAR DNA-binding 98.6 6.2E-08 2.1E-12 72.8 5.9 50 1-50 48-97 (103)
215 3p5t_L Cleavage and polyadenyl 98.6 2.9E-08 9.8E-13 72.9 3.2 48 1-48 36-85 (90)
216 2dgs_A DAZ-associated protein 98.5 1.5E-07 5.3E-12 70.1 6.8 50 1-50 43-93 (99)
217 1whw_A Hypothetical protein ri 98.5 2.5E-07 8.7E-12 68.9 7.6 50 1-50 41-92 (99)
218 1x5t_A Splicing factor 3B subu 98.5 2E-07 6.9E-12 68.9 6.9 50 1-50 39-90 (96)
219 3s8s_A Histone-lysine N-methyl 98.5 1E-07 3.5E-12 72.9 5.1 46 1-46 39-86 (110)
220 3lqv_A PRE-mRNA branch site pr 98.5 3.5E-08 1.2E-12 75.8 2.3 65 6-82 43-109 (115)
221 2dhx_A Poly (ADP-ribose) polym 98.5 9.1E-07 3.1E-11 65.6 9.5 75 55-138 7-86 (104)
222 2fc8_A NCL protein; structure 98.5 1.5E-07 5E-12 70.6 5.2 49 1-49 45-95 (102)
223 2cqb_A Peptidyl-prolyl CIS-tra 98.5 2.4E-07 8.3E-12 69.4 6.4 50 1-50 45-96 (102)
224 1x4h_A RNA-binding protein 28; 98.5 3.9E-07 1.3E-11 69.3 7.3 50 1-50 48-105 (111)
225 2dgo_A Cytotoxic granule-assoc 98.5 2.8E-07 9.6E-12 70.7 6.5 50 1-50 48-99 (115)
226 2dng_A Eukaryotic translation 98.4 2.2E-07 7.6E-12 69.8 5.6 49 1-49 47-96 (103)
227 2dnz_A Probable RNA-binding pr 98.4 2.9E-07 1E-11 67.9 6.1 49 1-49 38-88 (95)
228 2hvz_A Splicing factor, argini 98.4 1.7E-07 5.7E-12 70.2 4.9 58 9-66 36-101 (101)
229 1wez_A HnRNP H', FTP-3, hetero 98.4 1.1E-07 3.9E-12 71.6 3.9 47 1-48 47-94 (102)
230 1x5u_A Splicing factor 3B subu 98.4 2.9E-07 9.9E-12 69.3 6.1 49 1-49 48-98 (105)
231 2cpe_A RNA-binding protein EWS 98.4 3.9E-07 1.3E-11 69.6 6.9 49 1-49 56-106 (113)
232 3md1_A Nuclear and cytoplasmic 98.4 2.4E-07 8.3E-12 66.5 5.4 46 2-47 35-82 (83)
233 1fj7_A Nucleolin RBD1, protein 98.4 1.4E-07 4.6E-12 70.7 4.1 48 1-48 49-97 (101)
234 2rs2_A Musashi-1, RNA-binding 98.4 3.4E-07 1.1E-11 69.8 6.4 49 1-49 58-107 (109)
235 3bs9_A Nucleolysin TIA-1 isofo 98.4 2E-07 6.7E-12 67.6 4.7 46 1-46 39-86 (87)
236 1x5s_A Cold-inducible RNA-bind 98.4 2.9E-07 9.9E-12 68.9 5.8 49 1-49 45-95 (102)
237 1wi8_A EIF-4B, eukaryotic tran 98.4 3.8E-07 1.3E-11 68.6 6.3 49 1-49 47-97 (104)
238 2mss_A Protein (musashi1); RNA 98.4 2.2E-07 7.5E-12 65.5 4.6 43 1-43 32-75 (75)
239 1wg5_A Heterogeneous nuclear r 98.4 4.4E-07 1.5E-11 68.4 6.5 47 2-49 50-97 (104)
240 2cq0_A Eukaryotic translation 98.4 3.5E-07 1.2E-11 68.7 5.9 49 1-49 48-98 (103)
241 2dis_A Unnamed protein product 98.4 5.7E-07 1.9E-11 68.2 7.1 48 2-49 44-95 (109)
242 3ns6_A Eukaryotic translation 98.4 1.5E-07 5E-12 70.6 3.7 46 1-46 45-93 (100)
243 2cpz_A CUG triplet repeat RNA- 98.4 3.2E-07 1.1E-11 70.3 5.7 50 1-50 58-109 (115)
244 1x4b_A Heterogeneous nuclear r 98.4 3.5E-07 1.2E-11 70.2 5.5 50 1-50 60-110 (116)
245 2dnm_A SRP46 splicing factor; 98.4 3.3E-07 1.1E-11 68.8 5.1 49 1-49 46-96 (103)
246 2x1f_A MRNA 3'-END-processing 98.4 5.1E-07 1.8E-11 66.8 6.1 48 1-48 35-84 (96)
247 2cqd_A RNA-binding region cont 98.4 6.6E-07 2.3E-11 68.7 6.9 49 1-49 50-99 (116)
248 2dh8_A DAZ-associated protein 98.4 1.6E-07 5.5E-12 70.8 3.3 50 1-50 49-99 (105)
249 2cqp_A RNA-binding protein 12; 98.4 3.6E-07 1.2E-11 67.9 4.9 46 1-46 48-95 (98)
250 2dgp_A Bruno-like 4, RNA bindi 98.3 7.8E-07 2.7E-11 67.0 6.5 49 1-49 46-99 (106)
251 1iqt_A AUF1, heterogeneous nuc 98.3 2.4E-07 8.3E-12 65.2 3.4 43 1-43 32-75 (75)
252 3s7r_A Heterogeneous nuclear r 98.3 3.3E-07 1.1E-11 66.5 4.1 43 1-43 44-87 (87)
253 1p27_B RNA-binding protein 8A; 98.3 3.9E-07 1.3E-11 68.7 4.6 47 1-47 56-104 (106)
254 2cpy_A RNA-binding protein 12; 98.3 2.4E-07 8.2E-12 71.1 3.3 45 1-46 49-94 (114)
255 2kxn_B Transformer-2 protein h 98.3 5.1E-07 1.7E-11 71.0 5.1 47 1-47 79-127 (129)
256 2m2b_A RNA-binding protein 10; 98.3 3.3E-07 1.1E-11 72.1 4.1 48 1-49 58-111 (131)
257 2ek1_A RNA-binding protein 12; 98.3 4.1E-07 1.4E-11 67.1 4.3 44 1-44 48-93 (95)
258 2dgw_A Probable RNA-binding pr 98.3 5.4E-07 1.8E-11 66.0 4.9 45 2-47 43-88 (91)
259 2cph_A RNA binding motif prote 98.3 1.1E-06 3.9E-11 66.2 6.7 50 1-50 48-101 (107)
260 2do4_A Squamous cell carcinoma 98.3 6.8E-07 2.3E-11 66.7 5.4 46 2-48 51-98 (100)
261 3n9u_C Cleavage and polyadenyl 98.3 3.3E-07 1.1E-11 74.6 3.8 46 1-46 90-137 (156)
262 2j76_E EIF-4B, EIF4B, eukaryot 98.3 5.9E-07 2E-11 67.2 4.9 46 1-46 51-98 (100)
263 2e5h_A Zinc finger CCHC-type a 98.3 7.6E-07 2.6E-11 65.5 5.4 43 1-43 49-93 (94)
264 1oo0_B CG8781-PA, drosophila Y 98.3 8.4E-07 2.9E-11 67.4 5.7 47 1-47 59-107 (110)
265 2la6_A RNA-binding protein FUS 98.3 5.3E-07 1.8E-11 67.2 4.5 43 1-43 54-98 (99)
266 2xs2_A Deleted in azoospermia- 98.3 1.5E-07 5.3E-12 70.5 1.4 49 2-51 43-91 (102)
267 2wbr_A GW182, gawky, LD47780P; 98.3 1.3E-06 4.5E-11 63.5 6.2 36 8-43 41-78 (89)
268 2cqc_A Arginine/serine-rich sp 98.3 6.1E-07 2.1E-11 66.1 4.6 45 1-45 48-94 (95)
269 3ex7_B RNA-binding protein 8A; 98.3 8.3E-07 2.8E-11 69.1 5.5 49 1-49 55-105 (126)
270 2jrs_A RNA-binding protein 39; 98.3 5.6E-07 1.9E-11 68.4 4.2 46 2-47 60-107 (108)
271 2kn4_A Immunoglobulin G-bindin 98.3 1.5E-06 5.1E-11 70.4 7.0 49 1-49 103-153 (158)
272 1u6f_A Tcubp1, RNA-binding pro 98.3 7.6E-07 2.6E-11 70.6 5.1 49 1-49 75-125 (139)
273 2fc9_A NCL protein; structure 98.3 1.5E-06 5.1E-11 64.9 6.4 45 5-49 48-94 (101)
274 3mdf_A Peptidyl-prolyl CIS-tra 98.3 7.6E-07 2.6E-11 64.1 4.6 43 1-43 40-84 (85)
275 3ucg_A Polyadenylate-binding p 98.3 6.8E-07 2.3E-11 65.0 4.4 45 2-46 40-85 (89)
276 2dnn_A RNA-binding protein 12; 98.3 8E-07 2.7E-11 67.8 4.9 44 1-45 48-92 (109)
277 2ki2_A SS-DNA binding protein 98.3 5.5E-07 1.9E-11 65.8 3.9 48 1-49 34-83 (90)
278 2div_A TRNA selenocysteine ass 98.3 6E-07 2E-11 66.8 4.0 47 1-47 43-95 (99)
279 1h2v_Z 20 kDa nuclear CAP bind 98.3 1E-06 3.5E-11 71.3 5.8 48 1-48 72-121 (156)
280 2dhg_A TRNA selenocysteine ass 98.3 8.9E-07 3E-11 66.5 5.0 48 1-49 43-93 (104)
281 2fy1_A RNA-binding motif prote 98.3 1.4E-06 4.9E-11 67.0 6.2 47 2-49 41-89 (116)
282 1uaw_A Mouse-musashi-1; RNP-ty 98.2 4.8E-07 1.6E-11 63.9 3.1 43 1-43 33-76 (77)
283 2lea_A Serine/arginine-rich sp 98.2 1E-06 3.5E-11 69.8 5.2 49 1-49 80-130 (135)
284 2hgm_A HNRPF protein, heteroge 98.2 2.6E-07 8.8E-12 72.4 1.6 45 1-46 76-121 (126)
285 2cpf_A RNA binding motif prote 98.2 8.5E-07 2.9E-11 65.8 4.3 45 6-50 46-92 (98)
286 1wel_A RNA-binding protein 12; 98.2 3.3E-07 1.1E-11 71.4 2.0 45 1-45 58-103 (124)
287 1p1t_A Cleavage stimulation fa 98.2 7.9E-07 2.7E-11 66.7 3.9 46 2-47 42-89 (104)
288 2kt5_A RNA and export factor-b 98.2 2.6E-06 8.8E-11 66.2 6.7 47 2-49 69-117 (124)
289 2dnl_A Cytoplasmic polyadenyla 98.2 1.4E-06 4.9E-11 66.7 5.1 44 1-44 40-86 (114)
290 2cpi_A CCR4-NOT transcription 98.2 2.1E-06 7.2E-11 65.4 5.7 43 6-48 59-103 (111)
291 2dnh_A Bruno-like 5, RNA bindi 98.2 2.2E-06 7.5E-11 64.4 5.5 47 2-49 49-100 (105)
292 2d9p_A Polyadenylate-binding p 98.2 2.7E-06 9.2E-11 63.7 6.0 45 6-50 51-97 (103)
293 2jwn_A Embryonic polyadenylate 98.2 2.2E-06 7.4E-11 66.5 5.6 46 2-47 70-116 (124)
294 2do0_A HnRNP M, heterogeneous 98.2 3.1E-06 1.1E-10 64.5 6.3 45 2-47 49-95 (114)
295 3q2s_C Cleavage and polyadenyl 98.2 7.9E-07 2.7E-11 76.9 3.1 45 1-45 103-149 (229)
296 2dgx_A KIAA0430 protein; RRM d 98.1 3.3E-06 1.1E-10 62.5 5.9 44 1-47 46-91 (96)
297 2cq4_A RNA binding motif prote 98.1 9.5E-07 3.2E-11 67.6 3.0 46 1-46 58-104 (114)
298 2khc_A Testis-specific RNP-typ 98.1 1.5E-06 5.1E-11 66.8 4.1 43 1-43 73-117 (118)
299 1s79_A Lupus LA protein; RRM, 98.1 1.7E-06 6E-11 65.1 4.2 43 2-45 45-88 (103)
300 2hgl_A HNRPF protein, heteroge 98.1 9.8E-07 3.4E-11 70.0 2.9 43 2-45 81-124 (136)
301 2dha_A FLJ20171 protein; RRM d 98.1 4.8E-07 1.6E-11 70.6 1.0 42 2-44 61-103 (123)
302 2hgn_A Heterogeneous nuclear r 98.1 8.3E-07 2.8E-11 70.7 2.3 47 1-48 78-125 (139)
303 4a8x_A RNA-binding protein wit 98.1 2.2E-06 7.4E-11 62.1 4.3 45 2-46 38-85 (88)
304 3ulh_A THO complex subunit 4; 98.1 2.4E-06 8.2E-11 64.4 4.7 42 2-44 63-106 (107)
305 2lmi_A GRSF-1, G-rich sequence 98.1 1.7E-06 5.9E-11 65.5 3.6 44 1-45 47-91 (107)
306 1x4e_A RNA binding motif, sing 98.1 9.5E-07 3.3E-11 63.7 2.1 42 1-42 38-81 (85)
307 2lcw_A RNA-binding protein FUS 97.4 4E-07 1.4E-11 70.0 0.0 49 1-49 48-98 (116)
308 2db1_A Heterogeneous nuclear r 98.1 1.9E-06 6.4E-11 66.6 3.8 43 2-45 54-97 (118)
309 2cq3_A RNA-binding protein 9; 98.1 6.1E-06 2.1E-10 61.7 6.5 43 8-50 53-97 (103)
310 2cqi_A Nucleolysin TIAR; RNA r 98.1 6.2E-06 2.1E-10 61.7 6.6 42 8-49 53-96 (103)
311 2d9o_A DNAJ (HSP40) homolog, s 98.1 5.2E-06 1.8E-10 62.2 5.8 42 7-48 51-92 (100)
312 2cpx_A Hypothetical protein FL 98.1 3.1E-06 1E-10 64.7 4.6 46 4-49 61-108 (115)
313 2nlw_A Eukaryotic translation 98.1 4E-06 1.4E-10 63.2 4.8 44 4-47 55-101 (105)
314 2a3j_A U1 small nuclear ribonu 98.0 3.7E-06 1.3E-10 65.8 4.6 44 4-47 66-111 (127)
315 1x4a_A Splicing factor, argini 98.0 6.7E-06 2.3E-10 62.2 5.9 44 5-48 56-101 (109)
316 2dgv_A HnRNP M, heterogeneous 98.0 4.8E-06 1.6E-10 60.9 4.9 44 5-48 43-88 (92)
317 1rk8_A CG8781-PA, CG8781-PA pr 98.0 3.4E-06 1.2E-10 69.0 4.4 49 1-49 105-155 (165)
318 1fjc_A Nucleolin RBD2, protein 98.0 6E-06 2E-10 60.9 5.1 44 5-48 48-93 (96)
319 2ywk_A Putative RNA-binding pr 98.0 4E-06 1.4E-10 61.7 4.1 42 2-44 50-93 (95)
320 3egn_A RNA-binding protein 40; 98.0 3.2E-06 1.1E-10 67.3 3.2 45 4-48 86-132 (143)
321 1uw4_A UPF3X; nonsense mediate 98.0 6.3E-05 2.1E-09 55.0 9.8 69 57-125 2-72 (91)
322 1wey_A Calcipressin 1; structu 98.0 3.2E-05 1.1E-09 57.6 8.2 75 56-136 5-84 (104)
323 1x5o_A RNA binding motif, sing 98.0 8E-06 2.7E-10 62.2 5.0 43 2-45 59-111 (114)
324 2dit_A HIV TAT specific factor 97.9 1.3E-05 4.4E-10 61.1 5.8 43 8-50 62-106 (112)
325 2pe8_A Splicing factor 45; RRM 97.9 8E-06 2.7E-10 61.7 4.5 44 2-45 47-93 (105)
326 2krb_A Eukaryotic translation 97.9 5.5E-06 1.9E-10 59.1 3.4 37 4-40 41-80 (81)
327 2e5g_A U6 snRNA-specific termi 97.9 1.3E-05 4.4E-10 58.9 5.1 46 1-49 39-85 (94)
328 2jvr_A Nucleolar protein 3; RN 97.9 1.2E-05 3.9E-10 61.5 4.8 41 6-46 63-105 (111)
329 2e5j_A Methenyltetrahydrofolat 97.9 9.9E-06 3.4E-10 59.9 4.4 42 6-47 52-95 (97)
330 1sjq_A Polypyrimidine tract-bi 97.9 1.2E-05 4.1E-10 60.7 4.5 42 9-50 51-96 (105)
331 1x5p_A Negative elongation fac 97.9 2.2E-05 7.6E-10 58.0 6.0 43 7-49 46-90 (97)
332 1jmt_A Splicing factor U2AF 35 97.9 1.2E-05 4E-10 60.6 4.4 38 6-43 64-103 (104)
333 2err_A Ataxin-2-binding protei 97.8 1.4E-05 4.9E-10 60.5 4.6 40 7-46 66-107 (109)
334 2cqh_A IGF-II mRNA-binding pro 97.8 2.3E-05 7.8E-10 57.3 5.3 42 8-49 42-86 (93)
335 1x4f_A Matrin 3; structural ge 97.8 1.5E-05 5.3E-10 60.8 4.4 43 8-50 60-106 (112)
336 3pgw_S U1-70K; protein-RNA com 97.8 1.8E-05 6.3E-10 74.8 5.8 47 1-47 135-183 (437)
337 2j8a_A Histone-lysine N-methyl 97.8 7.6E-06 2.6E-10 63.7 2.4 43 1-43 39-93 (136)
338 1wg1_A KIAA1579 protein, homol 97.8 2.8E-05 9.4E-10 56.4 5.2 40 8-47 38-79 (88)
339 1nu4_A U1A RNA binding domain; 97.8 1.2E-05 4.1E-10 59.3 3.0 42 6-47 47-90 (97)
340 3r27_A HnRNP L, heterogeneous 97.8 3.7E-05 1.3E-09 57.4 5.6 40 8-47 55-98 (100)
341 2cq1_A PTB-like protein L; RRM 97.7 5E-05 1.7E-09 56.8 6.1 42 9-50 50-95 (101)
342 3v4m_A Splicing factor U2AF 65 97.7 3.9E-05 1.3E-09 57.9 5.6 38 7-44 56-95 (105)
343 2cpj_A Non-POU domain-containi 97.7 1.6E-05 5.5E-10 58.9 3.3 42 8-49 49-92 (99)
344 2bz2_A Negative elongation fac 97.7 2.1E-05 7.1E-10 60.9 4.0 41 8-48 71-113 (121)
345 2dnq_A RNA-binding protein 4B; 97.7 4.3E-05 1.5E-09 55.5 5.5 40 10-49 42-83 (90)
346 1x4d_A Matrin 3; structural ge 97.7 4E-05 1.4E-09 57.5 5.2 42 8-49 50-95 (102)
347 2cpd_A Apobec-1 stimulating pr 97.7 6.1E-05 2.1E-09 55.7 6.1 41 8-48 49-91 (99)
348 1wex_A Hypothetical protein (r 97.7 6.8E-05 2.3E-09 56.4 6.3 41 9-49 50-94 (104)
349 2dgu_A Heterogeneous nuclear r 97.7 6.3E-05 2.2E-09 56.1 6.0 42 9-50 44-87 (103)
350 2ad9_A Polypyrimidine tract-bi 97.7 3.8E-05 1.3E-09 59.3 4.8 42 9-50 66-111 (119)
351 1wwh_A Nucleoporin 35, nucleop 97.7 0.00017 5.9E-09 55.1 8.3 75 52-134 20-95 (119)
352 2la4_A Nuclear and cytoplasmic 97.7 1.5E-05 5.2E-10 59.2 2.3 38 8-45 61-100 (101)
353 1x4g_A Nucleolysin TIAR; struc 97.6 8.9E-05 3E-09 55.9 6.1 40 10-49 61-102 (109)
354 1whv_A Poly(A)-specific ribonu 97.6 0.00014 4.9E-09 53.2 6.7 54 56-118 16-69 (100)
355 2hzc_A Splicing factor U2AF 65 97.6 2.3E-05 7.8E-10 56.4 2.5 36 7-42 50-86 (87)
356 1why_A Hypothetical protein ri 97.6 6.6E-05 2.3E-09 55.3 5.0 38 10-47 53-94 (97)
357 3d2w_A TAR DNA-binding protein 97.6 4.6E-05 1.6E-09 55.5 3.9 40 8-47 46-85 (89)
358 2dgt_A RNA-binding protein 30; 97.6 0.00012 4E-09 53.4 5.8 41 10-50 44-86 (92)
359 2l08_A Regulator of nonsense t 97.6 0.00026 8.8E-09 52.1 7.4 72 54-125 7-80 (97)
360 2xnq_A Nuclear polyadenylated 97.6 9.8E-05 3.3E-09 54.6 5.3 38 9-46 56-95 (97)
361 1wf1_A RNA-binding protein RAL 97.5 6.7E-05 2.3E-09 56.7 4.4 40 9-48 61-102 (110)
362 1wf0_A TDP-43, TAR DNA-binding 97.5 4E-05 1.4E-09 55.4 2.8 42 8-49 40-81 (88)
363 2kvi_A Nuclear polyadenylated 97.5 6.2E-05 2.1E-09 55.4 3.9 41 9-49 44-86 (96)
364 2e44_A Insulin-like growth fac 97.5 0.00011 3.9E-09 53.8 5.2 35 13-47 57-93 (96)
365 1sjr_A Polypyrimidine tract-bi 97.5 0.00016 5.5E-09 58.8 6.4 42 7-48 81-126 (164)
366 1x4c_A Splicing factor, argini 97.5 0.00014 4.8E-09 54.8 5.5 40 11-50 51-97 (108)
367 2dnp_A RNA-binding protein 14; 97.5 0.00016 5.5E-09 52.4 5.6 39 10-48 43-83 (90)
368 1whx_A Hypothetical protein ri 97.5 0.00015 5E-09 55.1 5.5 39 8-46 44-84 (111)
369 2diu_A KIAA0430 protein; struc 97.5 0.00017 5.9E-09 52.9 5.5 40 11-50 47-88 (96)
370 2ytc_A PRE-mRNA-splicing facto 97.4 0.00011 3.9E-09 52.5 4.2 36 8-43 46-84 (85)
371 2jvo_A Nucleolar protein 3; nu 97.4 0.00012 4.2E-09 55.2 4.6 38 10-47 65-104 (108)
372 3ue2_A Poly(U)-binding-splicin 97.4 0.00014 4.7E-09 56.1 4.5 39 6-44 67-107 (118)
373 3ctr_A Poly(A)-specific ribonu 97.4 0.0003 1E-08 51.7 5.5 54 57-119 7-60 (101)
374 3zzy_A Polypyrimidine tract-bi 97.3 0.00026 8.9E-09 55.4 5.4 40 9-48 64-108 (130)
375 2cq2_A Hypothetical protein LO 97.3 0.00026 8.8E-09 54.1 5.0 37 9-45 62-105 (114)
376 3beg_B Splicing factor, argini 97.1 0.00049 1.7E-08 52.4 5.1 36 11-46 52-94 (115)
377 3s6e_A RNA-binding protein 39; 96.9 0.00066 2.3E-08 51.8 4.0 36 9-44 54-91 (114)
378 2e5i_A Heterogeneous nuclear r 96.9 0.002 6.7E-08 49.9 6.6 37 11-47 62-103 (124)
379 3pq1_A Poly(A) RNA polymerase; 96.8 0.00051 1.7E-08 64.9 2.7 57 55-117 52-108 (464)
380 2dnr_A Synaptojanin-1; RRM dom 96.5 0.0037 1.3E-07 45.3 5.1 35 13-47 52-87 (91)
381 2dhx_A Poly (ADP-ribose) polym 96.4 0.0037 1.3E-07 46.3 4.7 51 11-69 48-99 (104)
382 3tht_A Alkylated DNA repair pr 96.2 0.0031 1E-07 57.5 4.0 69 9-80 55-132 (345)
383 3p3d_A Nucleoporin 53; structu 96.0 0.0067 2.3E-07 46.9 4.5 78 56-135 7-98 (132)
384 1ufw_A Synaptojanin 2; RNP dom 95.8 0.0083 2.8E-07 43.8 3.8 33 13-45 61-94 (95)
385 2i2y_A Fusion protein consists 95.2 0.011 3.8E-07 46.8 3.0 42 94-136 9-51 (150)
386 3u1l_A PRE-mRNA-splicing facto 93.5 0.041 1.4E-06 47.4 3.2 23 8-30 177-199 (240)
387 3d45_A Poly(A)-specific ribonu 93.3 0.2 6.9E-06 47.9 7.9 56 55-119 439-494 (507)
388 2g0c_A ATP-dependent RNA helic 88.5 0.78 2.7E-05 31.5 5.1 59 67-134 12-75 (76)
389 1owx_A Lupus LA protein, SS-B, 88.0 0.6 2.1E-05 35.6 4.5 30 12-41 57-91 (121)
390 4eyt_A Telomerase associated p 85.3 3.8 0.00013 29.1 7.1 69 55-131 11-86 (129)
391 2l9w_A U4/U6 snRNA-associated- 82.5 1.2 4.1E-05 33.3 3.6 31 11-41 63-95 (117)
392 3fry_A Probable copper-exporti 77.5 6.7 0.00023 25.9 6.1 57 55-118 5-61 (73)
393 4e8u_A Putative uncharacterize 69.5 17 0.00058 29.2 7.3 49 57-108 13-72 (172)
394 2lfv_A Protein DAMX; cell divi 70.9 1.1 3.8E-05 33.2 0.0 52 67-120 33-86 (106)
395 2cu1_A Mitogen-activated prote 65.7 7.5 0.00026 28.2 4.1 53 61-121 21-74 (103)
396 2exu_A Transcription initiatio 65.1 8.3 0.00028 31.9 4.8 28 97-124 148-175 (200)
397 3zzp_A TS9, ribosomal protein 63.4 14 0.00048 25.4 5.1 59 12-80 7-68 (77)
398 3bb5_A Stress responsive alpha 62.0 31 0.0011 25.7 7.3 60 56-115 21-91 (121)
399 2kjw_A TS9, 30S ribosomal prot 61.5 7.9 0.00027 28.0 3.6 59 12-80 7-68 (96)
400 3bgu_A Ferredoxin-like protein 61.5 41 0.0014 24.8 7.9 59 56-115 22-90 (116)
401 4hhu_A OR280; engineered prote 60.5 28 0.00095 25.9 6.4 100 18-133 11-129 (170)
402 2qyc_A Ferredoxin-like protein 60.2 29 0.00098 24.8 6.7 54 59-113 8-71 (103)
403 3lpe_A Putative transcription 60.0 25 0.00086 24.9 6.1 34 83-121 40-73 (92)
404 1wey_A Calcipressin 1; structu 59.3 8.4 0.00029 28.3 3.4 34 13-46 49-84 (104)
405 3h7h_B Transcription elongatio 58.0 15 0.0005 27.1 4.6 26 97-122 50-75 (106)
406 1q4r_A Protein AT3G17210; cent 56.7 36 0.0012 24.8 6.8 59 57-115 12-81 (112)
407 3j21_T 50S ribosomal protein L 56.1 23 0.0008 24.9 5.2 55 61-118 27-83 (86)
408 2i9x_A Putative septation prot 54.5 15 0.00053 25.9 4.1 27 81-107 4-30 (87)
409 3dxs_X Copper-transporting ATP 54.5 30 0.001 22.3 5.6 56 57-118 4-63 (74)
410 1tr0_A Stable protein 1; plant 54.2 34 0.0012 24.7 6.2 58 57-114 10-80 (108)
411 2kpo_A Rossmann 2X2 fold prote 51.4 17 0.00057 25.1 3.7 51 68-131 33-84 (110)
412 3p3d_A Nucleoporin 53; structu 50.4 17 0.00059 27.8 4.0 34 10-43 62-96 (132)
413 2ia9_A Putative septation prot 49.7 20 0.00067 26.1 4.1 27 81-107 4-30 (100)
414 3lpe_A Putative transcription 49.5 36 0.0012 24.0 5.5 21 9-29 49-69 (92)
415 2ofg_X Zinc-transporting ATPas 48.7 70 0.0024 22.8 7.3 57 56-118 9-69 (111)
416 1ip9_A BEM1 protein; ubiquitin 47.3 27 0.00094 24.5 4.3 60 58-122 22-81 (85)
417 2i9z_A Putative septation prot 47.3 23 0.00078 26.0 4.1 26 82-107 5-30 (105)
418 4a4j_A Pacszia, cation-transpo 46.6 27 0.00092 22.2 4.2 55 57-117 4-61 (69)
419 2l3m_A Copper-ION-binding prot 45.1 52 0.0018 20.4 5.6 55 57-117 7-65 (71)
420 1yg0_A COP associated protein; 45.0 49 0.0017 20.1 5.3 54 58-117 4-60 (66)
421 1mli_A Muconolactone isomerase 44.9 83 0.0028 22.5 8.6 65 62-132 9-83 (96)
422 3ftd_A Dimethyladenosine trans 43.4 47 0.0016 28.0 6.3 32 57-88 96-127 (249)
423 1kvi_A Copper-transporting ATP 42.8 65 0.0022 20.7 7.4 58 55-118 8-69 (79)
424 3tqs_A Ribosomal RNA small sub 42.5 30 0.001 29.5 4.9 32 58-89 98-129 (255)
425 2w7a_A LINE-1 ORF1P; RNA-bindi 42.0 83 0.0029 22.7 6.4 75 57-132 4-99 (100)
426 3bde_A MLL5499 protein; stress 41.7 70 0.0024 23.7 6.3 57 57-113 22-86 (120)
427 2cfx_A HTH-type transcriptiona 41.2 1.1E+02 0.0038 22.9 8.1 53 63-120 72-124 (144)
428 3bn7_A Ferredoxin-like protein 40.4 69 0.0023 23.7 6.1 57 57-113 22-91 (120)
429 1q8l_A Copper-transporting ATP 40.3 77 0.0026 20.8 7.3 57 56-118 10-70 (84)
430 2npt_B Mitogen-activated prote 39.6 54 0.0018 23.4 4.9 50 63-120 35-85 (100)
431 3uzu_A Ribosomal RNA small sub 39.5 17 0.00058 31.5 2.8 33 57-89 115-147 (279)
432 2xmw_A PACS-N, cation-transpor 38.2 69 0.0024 19.7 5.9 55 57-117 5-62 (71)
433 1vq8_S 50S ribosomal protein L 37.7 38 0.0013 23.7 3.9 54 60-116 25-80 (85)
434 2yko_A LINE-1 ORF1P; RNA-bindi 37.4 1.4E+02 0.0049 25.0 8.0 77 55-134 51-150 (233)
435 1cpz_A Protein (COPZ); copper 37.4 70 0.0024 19.5 7.5 54 58-117 3-60 (68)
436 2g9o_A Copper-transporting ATP 37.2 57 0.002 22.1 4.9 56 57-118 5-64 (90)
437 2kt2_A Mercuric reductase; nme 35.7 77 0.0026 19.5 6.5 54 58-117 3-59 (69)
438 2ko1_A CTR148A, GTP pyrophosph 35.5 97 0.0033 20.6 6.8 50 69-120 18-68 (88)
439 1vd2_A Protein kinase C, IOTA 35.4 64 0.0022 22.7 4.8 52 59-117 17-73 (89)
440 1wwh_A Nucleoporin 35, nucleop 35.2 47 0.0016 24.9 4.3 33 10-42 59-93 (119)
441 2l69_A Rossmann 2X3 fold prote 34.9 91 0.0031 22.1 5.5 17 101-117 54-70 (134)
442 1fme_A FSD-EY peptide; beta-BE 33.7 23 0.00078 18.5 1.6 12 69-80 14-25 (28)
443 2cvi_A 75AA long hypothetical 33.5 1.1E+02 0.0037 20.5 6.5 44 69-116 14-57 (83)
444 1opz_A Potential copper-transp 33.4 88 0.003 19.5 7.4 56 56-117 7-66 (76)
445 3cjk_B Copper-transporting ATP 33.2 91 0.0031 19.6 6.3 55 58-118 5-63 (75)
446 3u5e_X 60S ribosomal protein L 33.2 48 0.0017 25.6 4.1 56 59-117 81-138 (142)
447 2jrh_A Mitogen-activated prote 33.2 60 0.0021 22.9 4.2 50 63-120 19-69 (94)
448 1osd_A MERP, hypothetical prot 33.1 87 0.003 19.3 6.8 55 58-118 6-64 (72)
449 4a17_R RPL23A, 60S ribosomal p 32.1 50 0.0017 25.8 4.1 56 59-117 89-146 (150)
450 2crl_A Copper chaperone for su 31.9 97 0.0033 21.6 5.5 55 57-118 21-76 (98)
451 2op5_A Hypothetical protein; f 31.9 1.3E+02 0.0044 20.9 7.9 46 71-117 37-82 (117)
452 2c60_A Human mitogen-activated 31.7 55 0.0019 23.7 3.9 50 63-120 46-96 (111)
453 3hf5_A 4-methylmuconolactone m 31.3 1.1E+02 0.0039 22.4 5.9 22 96-117 69-90 (116)
454 1yjr_A Copper-transporting ATP 31.3 97 0.0033 19.3 7.1 56 56-117 5-64 (75)
455 1x8d_A Hypothetical protein YI 30.9 73 0.0025 23.1 4.7 35 70-107 26-60 (104)
456 3lo3_A Uncharacterized conserv 30.4 89 0.0031 21.9 5.0 21 97-117 52-72 (94)
457 2djw_A Probable transcriptiona 30.3 95 0.0032 21.3 5.2 47 69-119 14-61 (92)
458 2zkr_s 60S ribosomal protein L 30.1 65 0.0022 25.3 4.4 56 59-117 95-152 (156)
459 3mfb_A Uncharacterized protein 29.9 81 0.0028 24.8 5.0 37 68-104 3-42 (157)
460 3fut_A Dimethyladenosine trans 29.6 48 0.0016 28.5 4.1 33 56-89 110-142 (271)
461 2cpq_A FragIle X mental retard 28.4 1.6E+02 0.0053 20.8 6.0 48 68-121 21-78 (91)
462 1aw0_A Menkes copper-transport 28.2 79 0.0027 19.5 4.2 55 58-118 6-64 (72)
463 3swz_A Steroid 17-alpha-hydrox 28.1 41 0.0014 30.9 3.6 50 59-117 17-70 (494)
464 2zbc_A 83AA long hypothetical 27.9 1.3E+02 0.0045 19.8 6.7 46 69-118 14-60 (83)
465 3u5c_Y RP50, 40S ribosomal pro 27.6 1.7E+02 0.0059 22.3 6.4 47 67-114 34-85 (135)
466 1y3j_A Copper-transporting ATP 26.9 82 0.0028 20.0 4.2 56 57-118 5-64 (77)
467 1fvq_A Copper-transporting ATP 26.8 1E+02 0.0034 19.0 4.6 54 58-117 5-61 (72)
468 2kyz_A Heavy metal binding pro 26.6 55 0.0019 20.3 3.1 52 59-117 5-56 (67)
469 1mwy_A ZNTA; open-faced beta-s 26.5 1.2E+02 0.0041 18.9 7.3 55 57-117 5-61 (73)
470 1cqm_A Ribosomal protein S6; a 26.4 1.1E+02 0.0039 21.7 5.0 52 65-117 11-77 (101)
471 2xzm_P RPS24E; ribosome, trans 26.1 1.4E+02 0.0047 23.2 5.6 47 67-114 32-83 (149)
472 3iz5_X 60S ribosomal protein L 26.1 55 0.0019 25.6 3.4 56 59-117 91-148 (152)
473 1p6t_A Potential copper-transp 25.9 1.7E+02 0.0057 21.5 6.3 56 57-118 76-135 (151)
474 2e7g_A Putative ribosome-bindi 25.4 86 0.0029 23.6 4.4 31 81-115 44-75 (129)
475 2cg4_A Regulatory protein ASNC 25.2 2.2E+02 0.0074 21.4 8.1 54 63-120 75-129 (152)
476 1whv_A Poly(A)-specific ribonu 25.2 47 0.0016 24.0 2.6 18 12-29 51-68 (100)
477 3ced_A Methionine import ATP-b 25.1 1.1E+02 0.0036 21.7 4.6 54 66-119 30-86 (98)
478 3rfw_A Cell-binding factor 2; 24.5 74 0.0025 26.5 4.3 46 66-119 89-134 (252)
479 2qif_A Copper chaperone COPZ; 24.3 1.2E+02 0.0041 18.1 6.2 54 58-117 5-62 (69)
480 1qyr_A KSGA, high level kasuga 23.9 52 0.0018 27.8 3.2 32 57-88 91-122 (252)
481 3rgo_A Protein-tyrosine phosph 23.5 1.2E+02 0.0039 22.8 5.0 26 57-86 7-32 (157)
482 3vej_A Ubiquitin-like protein 22.9 62 0.0021 19.3 2.4 15 65-79 3-17 (41)
483 2e1c_A Putative HTH-type trans 22.7 2.7E+02 0.0093 21.6 7.3 51 63-118 94-144 (171)
484 2cyy_A Putative HTH-type trans 22.4 2.5E+02 0.0084 21.0 7.3 53 63-120 74-126 (151)
485 3ts2_A Protein LIN-28 homolog 22.2 11 0.00039 29.4 -1.3 28 71-106 2-29 (148)
486 3fjv_A Uncharacterized novel p 22.1 71 0.0024 26.0 3.5 47 68-121 65-111 (194)
487 1rjj_A Expressed protein; beta 21.9 1.9E+02 0.0064 20.7 5.6 73 63-135 13-101 (111)
488 1wrm_A Dual specificity phosph 21.7 1.2E+02 0.0041 23.3 4.8 43 58-105 13-55 (165)
489 2ew9_A Copper-transporting ATP 21.6 1.5E+02 0.0052 21.6 5.3 57 56-118 81-141 (149)
490 1jrm_A MTH0637, conserved hypo 21.5 1.7E+02 0.0059 21.1 5.2 65 54-122 36-102 (104)
491 1wvf_A 4-cresol dehydrogenase 21.1 64 0.0022 30.4 3.5 43 72-115 217-261 (520)
492 4bby_A Alkyldihydroxyacetoneph 21.1 55 0.0019 32.0 3.1 55 63-118 350-408 (658)
493 2inr_A DNA topoisomerase 4 sub 21.0 99 0.0034 29.2 4.7 62 56-118 275-339 (514)
494 2j5a_A 30S ribosomal protein S 20.8 1.4E+02 0.0049 21.6 4.7 53 64-116 16-83 (110)
495 3hhl_A RPA0582; alpha-beta-bar 20.7 2.8E+02 0.0097 21.1 7.1 20 97-116 87-106 (143)
496 4af8_A Metacaspase MCA2; hydro 20.3 3.2E+02 0.011 24.5 7.8 62 53-118 90-161 (367)
497 2e5p_A Protein PHF1, PHD finge 20.3 33 0.0011 22.8 0.9 11 98-108 37-47 (68)
498 2kkh_A Putative heavy metal tr 20.2 2E+02 0.007 19.2 8.2 57 56-118 17-77 (95)
499 2pn6_A ST1022, 150AA long hypo 20.2 2.5E+02 0.0084 20.9 6.3 49 68-120 76-125 (150)
500 3h7h_B Transcription elongatio 20.1 86 0.003 22.8 3.3 27 8-34 49-75 (106)
No 1
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.95 E-value=3e-27 Score=200.73 Aligned_cols=139 Identities=37% Similarity=0.676 Sum_probs=117.0
Q ss_pred CCCCCCCCcccEEEEEECCHHHHHHHHH-ccCccCCcEEEEeecCCCCCCCC--CCCCcceEEEcCCCCCCCHHHHHHHH
Q 021295 1 MKDRKTGQPRGFGFVTYADPSVVDKVIE-DTHIINGKQVEIKRTIPKGAVGS--KDFKTKKIFVGGIPSSVNEDEFKDFF 77 (314)
Q Consensus 1 m~d~~tg~~kG~aFV~f~~~~~a~~A~~-~~~~i~g~~i~v~~~~~~~~~~~--~~~~~~~l~V~nLp~~~~e~~l~~~F 77 (314)
|+|+.|++++|||||+|.+.++|++||+ +.+.+.++.|.|+++.+...... .....++|||.|||+++++++|+++|
T Consensus 46 ~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~g~~l~v~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F 125 (196)
T 1l3k_A 46 MRDPNTKRSRGFGFVTYATVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYF 125 (196)
T ss_dssp EECTTTCCEEEEEEEEESSHHHHHHHHHTCSCEETTEECEEEECCC-----------CCSEEEEECCTTTCCHHHHHHHH
T ss_pred EEcCCCCCccceEEEEeCCHHHHHHHHhcCCCEECCEEeeeecccCcccccccccCCCcceEEEeCCCCCCCHHHHHHHH
Confidence 4678899999999999999999999999 55689999999999876644332 34566899999999999999999999
Q ss_pred hccCCeEEEEEeecCCCCCcceEEEEEeCChHHHHHHHHhcCCeeeCCeEEEEeecCCCCCCC
Q 021295 78 MQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVKKAEPKKPNL 140 (314)
Q Consensus 78 ~~~G~v~~v~i~~~~~~g~~rG~afV~F~~~~~a~~a~~~l~~~~~~gr~l~V~~a~~~~~~~ 140 (314)
++||+|+.|.|+.++.++++++||||+|+++++|++||+. ++..|+++.|.|.+|.++....
T Consensus 126 ~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~-~~~~~~G~~i~v~~a~~k~~~~ 187 (196)
T 1l3k_A 126 EQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQ-KYHTVNGHNCEVRKALSKQEMA 187 (196)
T ss_dssp TTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHC-SCCEETTEECEEEECC------
T ss_pred hcCCCeEEEEEeecCCCCCccceEEEEECCHHHHHHHHHh-CCcEECCEEEEEEecCChhHhc
Confidence 9999999999999999999999999999999999999998 7899999999999999887654
No 2
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.94 E-value=7e-27 Score=201.45 Aligned_cols=141 Identities=25% Similarity=0.503 Sum_probs=121.9
Q ss_pred CCCCCCCCcccEEEEEECCHHHHHHHHH--ccCccCCcEEEEeecCCCCCCCC-------CCCCcceEEEcCCCCCCCHH
Q 021295 1 MKDRKTGQPRGFGFVTYADPSVVDKVIE--DTHIINGKQVEIKRTIPKGAVGS-------KDFKTKKIFVGGIPSSVNED 71 (314)
Q Consensus 1 m~d~~tg~~kG~aFV~f~~~~~a~~A~~--~~~~i~g~~i~v~~~~~~~~~~~-------~~~~~~~l~V~nLp~~~~e~ 71 (314)
|+|+.|+++++||||+|.+.++|++|++ +...|.++.|.|.++........ .....++|||.|||++++++
T Consensus 61 ~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~t~~ 140 (216)
T 2qfj_A 61 SWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRPSNIGQAQPIIDQLAEEARAFNRIYVASVHQDLSDD 140 (216)
T ss_dssp CCC-CC-CCCSEEEEEESSHHHHHHHHHHHSSCCCC-CCCEEECCSCCGGGHHHHHHHHHHHTTSCEEEEECCCTTCCHH
T ss_pred eecCCCCccCceEEEEeCCHHHHHHHHHHccCCeeCCeeEEEecCCCccccchhhhhhhcccCCCcEEEEeCCCCcCCHH
Confidence 4678899999999999999999999998 45688999999988765532211 23456899999999999999
Q ss_pred HHHHHHhccCCeEEEEEeecCCCCCcceEEEEEeCChHHHHHHHHhcCCeeeCCeEEEEeecCCCCCCCC
Q 021295 72 EFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVKKAEPKKPNLP 141 (314)
Q Consensus 72 ~l~~~F~~~G~v~~v~i~~~~~~g~~rG~afV~F~~~~~a~~a~~~l~~~~~~gr~l~V~~a~~~~~~~~ 141 (314)
+|+++|++||+|+.|+|++++.++++++||||+|++.++|++||+.||+..|.+++|+|.++.++....+
T Consensus 141 ~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~i~V~~a~~~~~~~~ 210 (216)
T 2qfj_A 141 DIKSVFEAFGKIKSATLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVGKAVTPPMPLL 210 (216)
T ss_dssp HHHHHHTTSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCBCSSSBCEEEECSSCSSTTS
T ss_pred HHHHHHhccCCeeEEEEEecCCCCCcCceEEEEecCHHHHHHHHHHccCCEeCCcEEEEEEecCCCCCCC
Confidence 9999999999999999999999999999999999999999999999999999999999999998755443
No 3
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.94 E-value=1.6e-27 Score=197.24 Aligned_cols=131 Identities=45% Similarity=0.859 Sum_probs=120.3
Q ss_pred CCCCCCCCcccEEEEEECCHHHHHHHHHccCccCCcEEEEeecCCCCCCCCCCCCcceEEEcCCCCCCCHHHHHHHHhcc
Q 021295 1 MKDRKTGQPRGFGFVTYADPSVVDKVIEDTHIINGKQVEIKRTIPKGAVGSKDFKTKKIFVGGIPSSVNEDEFKDFFMQF 80 (314)
Q Consensus 1 m~d~~tg~~kG~aFV~f~~~~~a~~A~~~~~~i~g~~i~v~~~~~~~~~~~~~~~~~~l~V~nLp~~~~e~~l~~~F~~~ 80 (314)
|+|+.|++++|||||+|.++++|++|+++.+.+.++.|.++++.++.. ..+.++|||.|||+++++++|+++|++|
T Consensus 36 ~~~~~~g~~~g~afV~f~~~~~a~~A~~~~~~~~g~~i~v~~~~~~~~----~~~~~~l~V~nlp~~~t~~~l~~~F~~~ 111 (167)
T 2cjk_A 36 MKDPATGRSRGFGFLSFEKPSSVDEVVKTQHILDGKVIDPKRAIPRDE----QDKTGKIFVGGIGPDVRPKEFEEFFSQW 111 (167)
T ss_dssp CCCTTTSSCCSCEEEEESSTHHHHHHHHSCCEETTEECCCEECCCHHH----HHHCEEEEEEEECTTCCHHHHHHHHHTT
T ss_pred EECCCCCCccceEEEEEccHHHHHHHHhcccccCCeEcccccccchhh----ccCCCeEEECCCCCCCCHHHHHHHHHhC
Confidence 567889999999999999999999999988889999999988765432 2346799999999999999999999999
Q ss_pred CCeEEEEEeecCCCCCcceEEEEEeCChHHHHHHHHhcCCeeeCCeEEEEeecCCC
Q 021295 81 GDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVKKAEPK 136 (314)
Q Consensus 81 G~v~~v~i~~~~~~g~~rG~afV~F~~~~~a~~a~~~l~~~~~~gr~l~V~~a~~~ 136 (314)
|+|+.|.|+.++.++++++||||+|+++++|++|++ ++...|.+++|+|++|.++
T Consensus 112 G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~i~V~~a~pk 166 (167)
T 2cjk_A 112 GTIIDAQLMLDKDTGQSRGFGFVTYDSADAVDRVCQ-NKFIDFKDRKIEIKRAEPR 166 (167)
T ss_dssp SCCSEEECCCSSSSSTTSEEEEEEESSHHHHHHHHH-CSEECSSSSCEEEEECCCC
T ss_pred ccEEEEEEEEcCCCCccceEEEEEECCHHHHHHHHh-CCCEEeCCeEEEEeecCCC
Confidence 999999999999899999999999999999999998 7999999999999999876
No 4
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.94 E-value=7.9e-26 Score=186.28 Aligned_cols=133 Identities=20% Similarity=0.286 Sum_probs=108.7
Q ss_pred CcccEEEEEECCHHHHHHHHHccC---ccCCcEE------EEeecC--CCCCCCCCCCCcceEEEcCCCCCCCHHHHHHH
Q 021295 8 QPRGFGFVTYADPSVVDKVIEDTH---IINGKQV------EIKRTI--PKGAVGSKDFKTKKIFVGGIPSSVNEDEFKDF 76 (314)
Q Consensus 8 ~~kG~aFV~f~~~~~a~~A~~~~~---~i~g~~i------~v~~~~--~~~~~~~~~~~~~~l~V~nLp~~~~e~~l~~~ 76 (314)
+++|||||+|.+.++|++|++..+ .+++... ...... ............++|||+|||++++|++|+++
T Consensus 11 ~~~G~~fV~f~~~~~A~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~ 90 (158)
T 2kn4_A 11 TLKGETTTEAVDAATAEKVFKQYANDNGVDGEWTYDDATKTFTVTEGSHHHHHHMDVEGMTSLKVDNLTYRTSPDTLRRV 90 (158)
T ss_dssp SCEEEEEEECSSHHHHHHHHHHHHHHHTCCCEEEEETTTTEEEEECCCCCSSCCCCCCBCCEEEEESCCTTCCHHHHHHH
T ss_pred cccchhHHHHHHHHhHHHHHHhhcccCCCCCcccccCccccccccccccccccccCCCCCCEEEEeCCCCCCCHHHHHHH
Confidence 699999999999999999997322 2222221 111111 11222234456789999999999999999999
Q ss_pred HhccCCeEEEEEeecCCCCCcceEEEEEeCChHHHHHHHHhcCCeeeCCeEEEEeecCCCCCCC
Q 021295 77 FMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVKKAEPKKPNL 140 (314)
Q Consensus 77 F~~~G~v~~v~i~~~~~~g~~rG~afV~F~~~~~a~~a~~~l~~~~~~gr~l~V~~a~~~~~~~ 140 (314)
|++||+|++|.|++|+.++++++||||+|++.++|++||+.||+..|.+++|+|+++.++.+..
T Consensus 91 F~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~~~ 154 (158)
T 2kn4_A 91 FEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMARYGRPPD 154 (158)
T ss_dssp HHHHSCEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTTEESSSSEEEEEEECCSSCCC
T ss_pred HHhcCCeEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECCCCCCCC
Confidence 9999999999999999999999999999999999999999999999999999999999875543
No 5
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.94 E-value=1.7e-25 Score=184.49 Aligned_cols=131 Identities=21% Similarity=0.419 Sum_probs=118.1
Q ss_pred CCCCCCCcccEEEEEECCHHHHHHHHH--ccCccCCcEEEEeecCCCCCCCCCCCCcceEEEcCCCCCCCHHHHHHHHhc
Q 021295 2 KDRKTGQPRGFGFVTYADPSVVDKVIE--DTHIINGKQVEIKRTIPKGAVGSKDFKTKKIFVGGIPSSVNEDEFKDFFMQ 79 (314)
Q Consensus 2 ~d~~tg~~kG~aFV~f~~~~~a~~A~~--~~~~i~g~~i~v~~~~~~~~~~~~~~~~~~l~V~nLp~~~~e~~l~~~F~~ 79 (314)
+|+ ++++++||||+|.+.++|++|++ +...+.++.|.++++.+... ....+.++|||.|||+++++++|+++|++
T Consensus 34 ~~~-~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~~~~~~~--~~~~~~~~l~v~nl~~~~t~~~l~~~f~~ 110 (166)
T 3md3_A 34 IDK-NNKNVNYAFVEYHQSHDANIALQTLNGKQIENNIVKINWAFQSQQ--SSSDDTFNLFVGDLNVNVDDETLRNAFKD 110 (166)
T ss_dssp CCC-C-CCEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCCCC--CCCTTCEEEEEESCCTTCCHHHHHHHHTT
T ss_pred ECC-CCCCCCEEEEEeCCHHHHHHHHHHcCCCccCCCeeEEEEcCCCCC--CCCCCCceEEECCCCCCCCHHHHHHHHhc
Confidence 444 57899999999999999999996 55688999999998876544 34556789999999999999999999999
Q ss_pred cCCeEEEEEeecCCCCCcceEEEEEeCChHHHHHHHHhcCCeeeCCeEEEEeecCC
Q 021295 80 FGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVKKAEP 135 (314)
Q Consensus 80 ~G~v~~v~i~~~~~~g~~rG~afV~F~~~~~a~~a~~~l~~~~~~gr~l~V~~a~~ 135 (314)
||+|+.|.|+.++.++++++||||+|+++++|++|++.||+..|.+++|+|++|++
T Consensus 111 ~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a~~ 166 (166)
T 3md3_A 111 FPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAAK 166 (166)
T ss_dssp STTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEESCC
T ss_pred cCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEEecCC
Confidence 99999999999999999999999999999999999999999999999999999863
No 6
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.94 E-value=9.5e-26 Score=186.61 Aligned_cols=129 Identities=23% Similarity=0.546 Sum_probs=118.1
Q ss_pred CCCCCCCCcccEEEEEECCHHHHHHHHH--ccCccCCcEEEEeecCCCCCCCCCCCCcceEEEcCCCCCCCHHHHHHHHh
Q 021295 1 MKDRKTGQPRGFGFVTYADPSVVDKVIE--DTHIINGKQVEIKRTIPKGAVGSKDFKTKKIFVGGIPSSVNEDEFKDFFM 78 (314)
Q Consensus 1 m~d~~tg~~kG~aFV~f~~~~~a~~A~~--~~~~i~g~~i~v~~~~~~~~~~~~~~~~~~l~V~nLp~~~~e~~l~~~F~ 78 (314)
|+|+.|++++|||||+|.++++|++|++ +...+.++.|.|+++.+... ..+.++|||.|||.++++++|+++|+
T Consensus 36 ~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~~~~----~~~~~~l~v~nl~~~~t~~~l~~~f~ 111 (168)
T 1b7f_A 36 MRDYKTGYSYGYAFVDFTSEMDSQRAIKVLNGITVRNKRLKVSYARPGGE----SIKDTNLYVTNLPRTITDDQLDTIFG 111 (168)
T ss_dssp CEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCCSS----TTTTCEEEEESCCTTCCHHHHHHHHT
T ss_pred EEeCCCCccceEEEEEECCHHHHHHHHHhcCCCEeCCcEEEEEecCCCcc----cCCCCCEEEeCCCCCCCHHHHHHhhh
Confidence 4577899999999999999999999997 55688999999999876543 34678999999999999999999999
Q ss_pred ccCCeEEEEEeecCCCCCcceEEEEEeCChHHHHHHHHhcCCeeeCC--eEEEEeec
Q 021295 79 QFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAG--AQVEVKKA 133 (314)
Q Consensus 79 ~~G~v~~v~i~~~~~~g~~rG~afV~F~~~~~a~~a~~~l~~~~~~g--r~l~V~~a 133 (314)
+||+|+.|.|++++.++++++||||+|+++++|++|++.||+..|.+ ++|+|++|
T Consensus 112 ~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~~~l~V~~A 168 (168)
T 1b7f_A 112 KYGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQEAISALNNVIPEGGSQPLSVRLA 168 (168)
T ss_dssp SSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTCSSCCEEEEC
T ss_pred cCCcEEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhcCCEecCCCeEEEEEeC
Confidence 99999999999998899999999999999999999999999999987 99999876
No 7
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.93 E-value=2.5e-26 Score=198.56 Aligned_cols=134 Identities=23% Similarity=0.496 Sum_probs=117.7
Q ss_pred CCCCCCCCcccEEEEEECCHHHHHHHHH--ccCccCCcEEEEeecCCCCCCCCCCCCcceEEEcCCCCCCCHHHHHHHHh
Q 021295 1 MKDRKTGQPRGFGFVTYADPSVVDKVIE--DTHIINGKQVEIKRTIPKGAVGSKDFKTKKIFVGGIPSSVNEDEFKDFFM 78 (314)
Q Consensus 1 m~d~~tg~~kG~aFV~f~~~~~a~~A~~--~~~~i~g~~i~v~~~~~~~~~~~~~~~~~~l~V~nLp~~~~e~~l~~~F~ 78 (314)
|+|+.|++++|||||+|.+.++|++||+ +...+.++.|.+.++...... .....++|||.|||++++|++|+++|+
T Consensus 48 ~~d~~tg~~~G~afV~F~~~~~A~~Ai~~~~~~~~~g~~i~~~~~~~~~~~--~~~~~~~l~v~nl~~~~t~~~l~~~F~ 125 (213)
T 4f02_A 48 CRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMWSQRDPSL--RKSGVGNIFIKNLDKSIDNKALYDTFS 125 (213)
T ss_dssp EECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCCTHH--HHHCTTEEEEESCCTTCCHHHHHHHHG
T ss_pred ecccCCCCccccccceeCCHHHHHHHHHHhhhhhcCCcccccccccccccc--cccccccceECCcccccHHHHHHHHHh
Confidence 4688999999999999999999999998 455788999998877654322 223457899999999999999999999
Q ss_pred ccCCeEEEEEeecCCCCCcceEEEEEeCChHHHHHHHHhcCCeeeCCeEEEEeecCCCCC
Q 021295 79 QFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVKKAEPKKP 138 (314)
Q Consensus 79 ~~G~v~~v~i~~~~~~g~~rG~afV~F~~~~~a~~a~~~l~~~~~~gr~l~V~~a~~~~~ 138 (314)
+||+|++|+|++|. ..+++||||+|+++++|++||+.||+..|.+++|+|++|.+++.
T Consensus 126 ~~G~i~~~~i~~d~--~~~~g~~fV~f~~~~~a~~Ai~~lng~~~~g~~i~V~~a~~~~~ 183 (213)
T 4f02_A 126 AFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKE 183 (213)
T ss_dssp GGSCEEEEEEEEET--TEEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCHHH
T ss_pred hcCCeEEEEeeccC--CCCceEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEcCCCcc
Confidence 99999999999985 34799999999999999999999999999999999999987643
No 8
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.93 E-value=6.8e-26 Score=188.34 Aligned_cols=127 Identities=23% Similarity=0.488 Sum_probs=114.9
Q ss_pred CCCCCcccEEEEEECCHHHHHHHHH-ccCccCCcEEEEeecCCCCCCCCCCCCcceEEEcCCCCCCCHHHHHHHHhccCC
Q 021295 4 RKTGQPRGFGFVTYADPSVVDKVIE-DTHIINGKQVEIKRTIPKGAVGSKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGD 82 (314)
Q Consensus 4 ~~tg~~kG~aFV~f~~~~~a~~A~~-~~~~i~g~~i~v~~~~~~~~~~~~~~~~~~l~V~nLp~~~~e~~l~~~F~~~G~ 82 (314)
..+.++|+||||+|.++++|++|++ +...+.++.|.|+++.+... ....++|||.|||+++++++|+++|++||+
T Consensus 45 ~~~~~~~g~afV~f~~~~~A~~A~~~~~~~~~g~~i~v~~~~~~~~----~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~ 120 (172)
T 2g4b_A 45 VQINQDKNFAFLEFRSVDETTQAMAFDGIIFQGQSLKIRRPHDYQP----LPGAHKLFIGGLPNYLNDDQVKELLTSFGP 120 (172)
T ss_dssp EEEETTTTEEEEEESSHHHHHHHGGGTTCEETTEECEEECCSSCCC----CTTTTCEEEECCCTTCCHHHHHHHHHTTSC
T ss_pred eEecCCCCEEEEEeCCHHHHHHHHHhCCcEecCceeeecCCcccCC----CCCCCEEEEEcCCCcCCHHHHHHHHHhcCC
Confidence 3467889999999999999999996 45688999999988655432 345789999999999999999999999999
Q ss_pred eEEEEEeecCCCCCcceEEEEEeCChHHHHHHHHhcCCeeeCCeEEEEeecC
Q 021295 83 VQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVKKAE 134 (314)
Q Consensus 83 v~~v~i~~~~~~g~~rG~afV~F~~~~~a~~a~~~l~~~~~~gr~l~V~~a~ 134 (314)
|+.|.|++++.++++++||||+|+++++|++|++.||+..|.+++|+|++|.
T Consensus 121 v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~As 172 (172)
T 2g4b_A 121 LKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRAS 172 (172)
T ss_dssp EEEEEEEECTTTCSEEEEEEEEESSTTHHHHHHHHHTTCEETTEECEEEECC
T ss_pred ceEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHcCCCEECCeEEEEEeCC
Confidence 9999999999899999999999999999999999999999999999999874
No 9
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.93 E-value=7.9e-26 Score=192.22 Aligned_cols=136 Identities=21% Similarity=0.449 Sum_probs=119.6
Q ss_pred CCCCCCcccEEEEEECCHHHHHHHHH-ccCccCCcEEEEeecCCCCCCC----------------CCCCCcceEEEcCCC
Q 021295 3 DRKTGQPRGFGFVTYADPSVVDKVIE-DTHIINGKQVEIKRTIPKGAVG----------------SKDFKTKKIFVGGIP 65 (314)
Q Consensus 3 d~~tg~~kG~aFV~f~~~~~a~~A~~-~~~~i~g~~i~v~~~~~~~~~~----------------~~~~~~~~l~V~nLp 65 (314)
+..++++|+||||+|.++++|++||+ +...|.++.|.|+++.+..... ......++|||.|||
T Consensus 44 ~~~~~~~~g~afV~F~~~~~A~~Al~l~g~~~~g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~ 123 (198)
T 2yh0_A 44 AVQINQDKNFAFLEFRSVDETTQAMAFDGIIFQGQSLKIRRPHDYQPLPGMSENPSVYVPGVVSTVVPDSAHKLFIGGLP 123 (198)
T ss_dssp EEEEETTTTEEEEEESCSHHHHHHGGGTTEEETTEEEEEECCCCCCCCCCSSSCSSCCCTTSSCCCSSCCCCEEEEECCC
T ss_pred EeEecCCCCEEEEEeCCHHHHHHHHHhcCCEEcCceEEEeCCCCCCCCCCCcCCCcCCCCCCccCCCCCCCCEEEEeCCC
Confidence 34567899999999999999999996 4458899999999876543221 122466899999999
Q ss_pred CCCCHHHHHHHHhccCCeEEEEEeecCCCCCcceEEEEEeCChHHHHHHHHhcCCeeeCCeEEEEeecCCCCC
Q 021295 66 SSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVKKAEPKKP 138 (314)
Q Consensus 66 ~~~~e~~l~~~F~~~G~v~~v~i~~~~~~g~~rG~afV~F~~~~~a~~a~~~l~~~~~~gr~l~V~~a~~~~~ 138 (314)
+++++++|+++|++||+|+.|.|+.++.++++++||||+|+++++|++|++.||+..|.+++|+|+++.++..
T Consensus 124 ~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~ 196 (198)
T 2yh0_A 124 NYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRASVGAK 196 (198)
T ss_dssp TTCCHHHHHHHHHTBSCEEEEEEEECTTTCSEEEEEEEEESSSSHHHHHHHHHTTCEETTEECEEEESCCCCC
T ss_pred CCCCHHHHHHHHHHcCCccEEEEeecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCCCCC
Confidence 9999999999999999999999999998999999999999999999999999999999999999999987653
No 10
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.93 E-value=2.2e-25 Score=183.90 Aligned_cols=129 Identities=31% Similarity=0.610 Sum_probs=116.6
Q ss_pred CCCCCCCCcccEEEEEECCHHHHHHHHH--ccCccCCcEEEEeecCCCCCCCCCCCCcceEEEcCCCCCCCHHHHHHHHh
Q 021295 1 MKDRKTGQPRGFGFVTYADPSVVDKVIE--DTHIINGKQVEIKRTIPKGAVGSKDFKTKKIFVGGIPSSVNEDEFKDFFM 78 (314)
Q Consensus 1 m~d~~tg~~kG~aFV~f~~~~~a~~A~~--~~~~i~g~~i~v~~~~~~~~~~~~~~~~~~l~V~nLp~~~~e~~l~~~F~ 78 (314)
|+|+.|+++++||||+|.++++|++|++ +...+.++.|.|.++.+... ....++|||.|||+++++++|+++|+
T Consensus 35 ~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~~~~----~~~~~~l~v~nl~~~~t~~~l~~~f~ 110 (167)
T 1fxl_A 35 VRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSA----SIRDANLYVSGLPKTMTQKELEQLFS 110 (167)
T ss_dssp EECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCCCG----GGTTCEEEEESCCTTCCHHHHHHHHG
T ss_pred EeCCCCCcceeEEEEEECCHHHHHHHHHHcCCCccCCceEEEEecCCCcc----cCCCCcEEECCCCCcCCHHHHHHHHH
Confidence 3577799999999999999999999998 55688999999998876533 34568999999999999999999999
Q ss_pred ccCCeEEEEEeecCCCCCcceEEEEEeCChHHHHHHHHhcCCeeeCCeE--EEEeec
Q 021295 79 QFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQ--VEVKKA 133 (314)
Q Consensus 79 ~~G~v~~v~i~~~~~~g~~rG~afV~F~~~~~a~~a~~~l~~~~~~gr~--l~V~~a 133 (314)
+||+|+.|+|+.++.++++++||||+|+++++|++|++.||+..|.++. |+|++|
T Consensus 111 ~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~~~i~v~~A 167 (167)
T 1fxl_A 111 QYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITVKFA 167 (167)
T ss_dssp GGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTCSSCCEEEEC
T ss_pred hcCCEeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhcCCccCCCccceEEEeC
Confidence 9999999999999889999999999999999999999999999999965 888775
No 11
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.93 E-value=1.3e-25 Score=187.36 Aligned_cols=129 Identities=20% Similarity=0.412 Sum_probs=115.0
Q ss_pred CCCCCCCCcccEEEEEECCHHHHHHHHH-ccCccCCcEEEEeecCCCCCCCCCCCCcceEEEcCCCCCCCHHHHHHHHhc
Q 021295 1 MKDRKTGQPRGFGFVTYADPSVVDKVIE-DTHIINGKQVEIKRTIPKGAVGSKDFKTKKIFVGGIPSSVNEDEFKDFFMQ 79 (314)
Q Consensus 1 m~d~~tg~~kG~aFV~f~~~~~a~~A~~-~~~~i~g~~i~v~~~~~~~~~~~~~~~~~~l~V~nLp~~~~e~~l~~~F~~ 79 (314)
|+|+.|+++||||||+|.++++|++|++ +...+.++.|.|+++.++.. ....+.++|||.|||+++++++|+++|++
T Consensus 45 ~~~~~~~~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~v~~~~~~~~--~~~~~~~~l~v~nlp~~~t~~~l~~~F~~ 122 (175)
T 1fje_B 45 VVDVRTGTNRKFGYVDFESAEDLEKALELTGLKVFGNEIKLEKPKGRDS--KKVRAARTLLAKNLSFNITEDELKEVFED 122 (175)
T ss_dssp CCEEEEETTTTEEEEEESSHHHHHHHHHGGGEEETTEEEEEECCCCSSC--STTGGGGEEEEESCCSSCCHHHHHHHCTT
T ss_pred EEECCCCccccEEEEEECCHHHHHHHHhcCCCEeCCeEEEEecCCCccc--cccccCCEEEEeCCCCCCCHHHHHHHHHh
Confidence 5677899999999999999999999997 55688999999998876543 34456789999999999999999999999
Q ss_pred cCCeEEEEEeecCCCCCcceEEEEEeCChHHHHHHHHhcCCeeeCCeEEEEeecCCC
Q 021295 80 FGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVKKAEPK 136 (314)
Q Consensus 80 ~G~v~~v~i~~~~~~g~~rG~afV~F~~~~~a~~a~~~l~~~~~~gr~l~V~~a~~~ 136 (314)
|++|..+ ..++++++||||+|+++++|++||+.||+..|.+++|+|++|.++
T Consensus 123 ~g~v~~~-----~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a~~k 174 (175)
T 1fje_B 123 ALEIRLV-----SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYTGEK 174 (175)
T ss_dssp CSEEEEE-----CSSSSCCSEEEEECSSHHHHHHHHHHHTEEEETTEEEEEEECSSC
T ss_pred cCeEEEe-----cCCCCCceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEecCCC
Confidence 9987655 467889999999999999999999999999999999999999875
No 12
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.91 E-value=2.5e-24 Score=179.05 Aligned_cols=129 Identities=23% Similarity=0.425 Sum_probs=108.3
Q ss_pred CCCCCC--CcccEEEEEECCHHHHHHHHHccC--ccC---CcEEEEeecCCCCCCCCCCCCcceEEEcCCCCCCCHHHHH
Q 021295 2 KDRKTG--QPRGFGFVTYADPSVVDKVIEDTH--IIN---GKQVEIKRTIPKGAVGSKDFKTKKIFVGGIPSSVNEDEFK 74 (314)
Q Consensus 2 ~d~~tg--~~kG~aFV~f~~~~~a~~A~~~~~--~i~---g~~i~v~~~~~~~~~~~~~~~~~~l~V~nLp~~~~e~~l~ 74 (314)
+|+.++ ++++||||+|.++++|++|++.++ .+. .+.+.+.++.+.. ......++|||.|||+++++++|+
T Consensus 37 ~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~l~v~nl~~~~t~~~l~ 113 (175)
T 3nmr_A 37 RDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNMKVLPGMHHPIQMKPADSEK---NNAVEDRKLFIGMISKKCTENDIR 113 (175)
T ss_dssp EECSSSSCEEEEEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCEEEECGGGC---CSCGGGSEEEEESCCTTCCHHHHH
T ss_pred ecCCCCCCCcceEEEEEECCHHHHHHHHHHhcCcEEccCCccceEEccccccc---cccCCCCeEEEcCCCCcCCHHHHH
Confidence 466666 899999999999999999998433 333 4566666554432 234567899999999999999999
Q ss_pred HHHhccCCeEEEEEeecCCCCCcceEEEEEeCChHHHHHHHHhcCCeeeC---CeEEEEeecC
Q 021295 75 DFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELA---GAQVEVKKAE 134 (314)
Q Consensus 75 ~~F~~~G~v~~v~i~~~~~~g~~rG~afV~F~~~~~a~~a~~~l~~~~~~---gr~l~V~~a~ 134 (314)
++|++||+|+.|.|++++ ++++++||||+|+++++|++|++.||+..+. +++|.|++|.
T Consensus 114 ~~F~~~G~i~~v~~~~~~-~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~~~l~V~~ad 175 (175)
T 3nmr_A 114 VMFSSFGQIEECRILRGP-DGLSRGCAFVTFTTRAMAQTAIKAMHQAQTMEGCSSPMVVKFAD 175 (175)
T ss_dssp HHHGGGSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTSCCCTTCSSCCEEEECC
T ss_pred HHHHhCCCEEEEEEEECC-CCCEEEEEEEEECCHHHHHHHHHHhcCCcccCCCCCCeEEEecC
Confidence 999999999999999995 6889999999999999999999999987766 4999999874
No 13
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.91 E-value=1.3e-23 Score=188.93 Aligned_cols=136 Identities=15% Similarity=0.317 Sum_probs=122.7
Q ss_pred CCCCCCCCcccEEEEEECCHHHHHHHHH--ccCccCCcEEEEeecCCCCCCCCCCCCcceEEEcCCCCCC-CHHHHHHHH
Q 021295 1 MKDRKTGQPRGFGFVTYADPSVVDKVIE--DTHIINGKQVEIKRTIPKGAVGSKDFKTKKIFVGGIPSSV-NEDEFKDFF 77 (314)
Q Consensus 1 m~d~~tg~~kG~aFV~f~~~~~a~~A~~--~~~~i~g~~i~v~~~~~~~~~~~~~~~~~~l~V~nLp~~~-~e~~l~~~F 77 (314)
|+|+.|++++|||||+|.+.++|++|++ +...+.++.|.|.++.++... ....+.++|||.|||+++ ++++|+++|
T Consensus 128 ~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~a~~~~~~-~~~~~~~~l~v~nlp~~~~~~~~l~~~f 206 (284)
T 3smz_A 128 VYSERTGQSKGYGFAEYMKKDSAARAKSDLLGKPLGPRTLYVHWTDAGQLT-PALLHSRCLCVDRLPPGFNDVDALCRAL 206 (284)
T ss_dssp EECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCGGGCC-TTTTSCSEEEEECCCTTCCCHHHHHHHT
T ss_pred EeeCCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEECCCCCCC-cccCCccEEEEecCCcccCCHHHHHHHh
Confidence 3577899999999999999999999996 556889999999998776443 344678899999999995 999999999
Q ss_pred hccCCeEEEEEeecCCCCCcceEEEEEeCChHHHHHHHHhcCCeeeCCeEEEEeecCCCCC
Q 021295 78 MQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVKKAEPKKP 138 (314)
Q Consensus 78 ~~~G~v~~v~i~~~~~~g~~rG~afV~F~~~~~a~~a~~~l~~~~~~gr~l~V~~a~~~~~ 138 (314)
++||.|+.|.|+++. +++++++|||+|+++++|++|++.||+..|.+++|+|+++.++..
T Consensus 207 ~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~~ 266 (284)
T 3smz_A 207 SAVHSPTFCQLACGQ-DGQLKGFAVLEYETAEMAEEAQQQADGLSLGGSHLRVSFCAPGPP 266 (284)
T ss_dssp CSSSCCSEEEEEECS-SCCEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECCSSSC
T ss_pred hCCCCeEEEEEEECC-CCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeEEEEEEecCCCc
Confidence 999999999999986 789999999999999999999999999999999999999988764
No 14
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.90 E-value=2.4e-23 Score=187.87 Aligned_cols=130 Identities=18% Similarity=0.330 Sum_probs=111.0
Q ss_pred CCCcccEEEEEECCHHHHHHHHH--ccCccCCcEEEEeecCCCCCCC---CCCCCcceEEEcCCCCC-CCHHHHHHHHhc
Q 021295 6 TGQPRGFGFVTYADPSVVDKVIE--DTHIINGKQVEIKRTIPKGAVG---SKDFKTKKIFVGGIPSS-VNEDEFKDFFMQ 79 (314)
Q Consensus 6 tg~~kG~aFV~f~~~~~a~~A~~--~~~~i~g~~i~v~~~~~~~~~~---~~~~~~~~l~V~nLp~~-~~e~~l~~~F~~ 79 (314)
++++++||||+|.+.++|++|++ +...|.++.|.|+++.+..... ......++|||.|||++ +++++|+++|++
T Consensus 155 ~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~~~~~~~~~~~~~~l~v~nlp~~~~t~~~l~~~F~~ 234 (292)
T 2ghp_A 155 FNTSRRFAYIDVTSKEDARYCVEKLNGLKIEGYTLVTKVSNPLEKSKRTDSATLEGREIMIRNLSTELLDENLLRESFEG 234 (292)
T ss_dssp ----CCEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECCCC---------CCTTTEEEEEEECTTTCCHHHHHHHHGG
T ss_pred CCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEECCCCcccccccccCCCCceEEEECCCcccCCHHHHHHHHhc
Confidence 47899999999999999999998 5568899999999987765443 23456789999999999 999999999999
Q ss_pred cCCeEEEEEeecCC-CCCcceEEEEEeCChHHHHHHHHhcCCeeeCCeEEEEeecCCC
Q 021295 80 FGDVQEHQIMRDHS-TSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVKKAEPK 136 (314)
Q Consensus 80 ~G~v~~v~i~~~~~-~g~~rG~afV~F~~~~~a~~a~~~l~~~~~~gr~l~V~~a~~~ 136 (314)
||+|+.|+|+++.. |+++++||||+|+++++|++|| .||+..|.+++|.|.+|.++
T Consensus 235 ~G~v~~v~i~~~~~~tg~~~g~afV~F~~~~~A~~A~-~l~g~~~~g~~i~V~~a~~k 291 (292)
T 2ghp_A 235 FGSIEKINIPAGQKEHSFNNCCAFMVFENKDSAERAL-QMNRSLLGNREISVSLADKK 291 (292)
T ss_dssp GSCEEEEECCSCCC---CCCEEEEEEESSHHHHHHHG-GGTTEEETTEEEEEEECCCC
T ss_pred cCCeeEEEEEecCCcCCCCceEEEEEeCCHHHHHHHH-HhcCCEECCcEEEEEEecCC
Confidence 99999999999876 5899999999999999999999 99999999999999999876
No 15
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.90 E-value=7.6e-23 Score=183.69 Aligned_cols=125 Identities=17% Similarity=0.291 Sum_probs=108.7
Q ss_pred CCCCcccEEEEEECCHHHHHHHHH--ccCccCCcEEEEeecCCCCCC---------------------------------
Q 021295 5 KTGQPRGFGFVTYADPSVVDKVIE--DTHIINGKQVEIKRTIPKGAV--------------------------------- 49 (314)
Q Consensus 5 ~tg~~kG~aFV~f~~~~~a~~A~~--~~~~i~g~~i~v~~~~~~~~~--------------------------------- 49 (314)
.|+++||||||+|.+.++|++|++ +...|.++.|.|+++..+...
T Consensus 47 ~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 126 (282)
T 3pgw_A 47 RSLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMRIQYAKTDSDIIAKMKGTFVERDRKREKRKPKSQETPATKKAVQ 126 (282)
T ss_pred CCCCcceEEEEEECCHHHHHHHHHHhcCCeeCCcEEEEEEeccCcchhhhhcCCcccchhhhhhhhccccchhhhhhhcc
Confidence 388999999999999999999997 455889999999887554320
Q ss_pred --------------------------------------------------------------------------CCCCCC
Q 021295 50 --------------------------------------------------------------------------GSKDFK 55 (314)
Q Consensus 50 --------------------------------------------------------------------------~~~~~~ 55 (314)
.....+
T Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 206 (282)
T 3pgw_A 127 GGGATPVVGAVQGPVPGMPPMTQAPRIMHHMPGQPPYMPPPGMIPPPGLAPGQIPPGAMPPQQLMPGQMPPAQPLSENPP 206 (282)
T ss_pred CcCCcccCCCCCCCCCCCCcccccccccccCCCCCCCCCCCCCCCCCCCCccccCcccCcccccCccccCccCCccCCCC
Confidence 012234
Q ss_pred cceEEEcCCCCCCCHHHHHHHHhccCCeEEEEEeecCCCCCcceEEEEEeCChHHHHHHHHhcCCeeeC-CeEEEEeecC
Q 021295 56 TKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELA-GAQVEVKKAE 134 (314)
Q Consensus 56 ~~~l~V~nLp~~~~e~~l~~~F~~~G~v~~v~i~~~~~~g~~rG~afV~F~~~~~a~~a~~~l~~~~~~-gr~l~V~~a~ 134 (314)
.++|||.|||+++++++|+++|++||.|++|+|+.++ ++||||+|++.++|++||+.||+..|. ++.|+|++++
T Consensus 207 ~~~l~v~nl~~~~~~~~l~~~F~~~G~i~~v~~~~~~-----~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~ak 281 (282)
T 3pgw_A 207 NHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVPGR-----HDIAFVEFDNEVQAGAARDALQGFKITQNNAMKISFAK 281 (282)
T ss_pred CCEEEEeCCCCcCCHHHHHHHHHhcCCeEEEEEecCC-----CcEEEEEeCCHHHHHHHHHHcCCcEeCCCCEEEEEEec
Confidence 5789999999999999999999999999999999764 589999999999999999999999999 9999999986
No 16
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.89 E-value=6e-23 Score=167.66 Aligned_cols=126 Identities=18% Similarity=0.298 Sum_probs=109.2
Q ss_pred CCCcccEEEEEECCHHHHHHHHHcc---CccCCcEEEEeecCCC------------CCCCCCCCCcceEEEcCCCCCCCH
Q 021295 6 TGQPRGFGFVTYADPSVVDKVIEDT---HIINGKQVEIKRTIPK------------GAVGSKDFKTKKIFVGGIPSSVNE 70 (314)
Q Consensus 6 tg~~kG~aFV~f~~~~~a~~A~~~~---~~i~g~~i~v~~~~~~------------~~~~~~~~~~~~l~V~nLp~~~~e 70 (314)
....+|+++|+|.+.++|++|++++ ..+++ .+.++++..+ ........+.++|||+|||+++++
T Consensus 9 g~~l~G~~~ve~~~~~~A~~a~~~~~ng~~~~G-~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~t~ 87 (150)
T 2i2y_A 9 GKTLKGETTTEAVDAATAEKVFKQYANDNGVDG-EWTYDDATKTFTVTEGSHHHHHHMHRDSCPLDCKVYVGNLGNNGNK 87 (150)
T ss_dssp CSSSCEEEEEECSSHHHHTTTHHHHHHHHTCCC-EEEEETTTTEEEEECSSSSCCCCSCSSSSTTSCEEEEESCCSCCSC
T ss_pred cccccccceeeecCHHHHHHHHHHHhcCCCCCC-ceecccccCccccccccccccccccccCCCCCCEEEEeCCCCCCCH
Confidence 4578999999999999999999743 47888 8888876542 122334567789999999999999
Q ss_pred HHHHHHHhccCCeEEEEEeecCCCCCcceEEEEEeCChHHHHHHHHhcCCeeeCCeEEEEeecCCCC
Q 021295 71 DEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVKKAEPKK 137 (314)
Q Consensus 71 ~~l~~~F~~~G~v~~v~i~~~~~~g~~rG~afV~F~~~~~a~~a~~~l~~~~~~gr~l~V~~a~~~~ 137 (314)
++|+++|++||+|++|+|+++ +++||||+|+++++|++||+.||+..|.+++|+|+++.+++
T Consensus 88 ~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~ 149 (150)
T 2i2y_A 88 TELERAFGYYGPLRSVWVARN-----PPGFAFVEFEDPRDAADAVRELDGRTLCGCRVRVELSNGEK 149 (150)
T ss_dssp HHHHHHHHHHSCEEEEEECSS-----SCSEEEEEESSHHHHHHHHHHHSSSCSSSSCCEEEECCCCC
T ss_pred HHHHHHHHhhCCEEEEEEeeC-----CCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEcCCCC
Confidence 999999999999999999876 58899999999999999999999999999999999998764
No 17
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.88 E-value=2.4e-23 Score=167.21 Aligned_cols=125 Identities=19% Similarity=0.285 Sum_probs=85.7
Q ss_pred EEEEEECCHHHHHHHHHccCccCCcEEEEeecCCCCCCCCCCCCcceEEEcCCCCCCCHHHHHHHHhccCCeEEEEEeec
Q 021295 12 FGFVTYADPSVVDKVIEDTHIINGKQVEIKRTIPKGAVGSKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRD 91 (314)
Q Consensus 12 ~aFV~f~~~~~a~~A~~~~~~i~g~~i~v~~~~~~~~~~~~~~~~~~l~V~nLp~~~~e~~l~~~F~~~G~v~~v~i~~~ 91 (314)
++|++++|...+..||+. +.+....-.........+.+..+.++|||.|||+++++++|+++|++||+|+.|+|+.+
T Consensus 6 ~~~~~~~~~~~~~~a~~~---~~g~~~~g~~~~~~~~~~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~ 82 (135)
T 2lea_A 6 HHHHHSSGLVPRGSHMAS---MTGGQQMGRGSMSYGRPPPDVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRD 82 (135)
T ss_dssp --------------------------------CCSCCSCSSGGGCCCEEEECCCSSCHHHHHHHHHGGGSCCSEEECCCC
T ss_pred cccccccCCCchhhhhhh---ccCCCCCCCCCCCcCCCCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEec
Confidence 344455555555556554 33322222222223333445567789999999999999999999999999999999999
Q ss_pred CCCCCcceEEEEEeCChHHHHHHHHhcCCeeeCCeEEEEeecCCCCCC
Q 021295 92 HSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVKKAEPKKPN 139 (314)
Q Consensus 92 ~~~g~~rG~afV~F~~~~~a~~a~~~l~~~~~~gr~l~V~~a~~~~~~ 139 (314)
+.++++++||||+|+++++|++||+.||+..|.+++|+|+++++..+.
T Consensus 83 ~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~~a~~~~~~ 130 (135)
T 2lea_A 83 RYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMARYGRPP 130 (135)
T ss_dssp SSSSSCCSCCEEECSCHHHHHHHHTTTTTCCSSSSCCEEEECCCCCCC
T ss_pred CCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCCCCCC
Confidence 999999999999999999999999999999999999999999886554
No 18
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.88 E-value=2.2e-22 Score=172.88 Aligned_cols=123 Identities=15% Similarity=0.257 Sum_probs=102.7
Q ss_pred cccEEEEEECCHHHHHHHHH--ccCccCCcEEEEeecCCCCCCCC---------------------------------CC
Q 021295 9 PRGFGFVTYADPSVVDKVIE--DTHIINGKQVEIKRTIPKGAVGS---------------------------------KD 53 (314)
Q Consensus 9 ~kG~aFV~f~~~~~a~~A~~--~~~~i~g~~i~v~~~~~~~~~~~---------------------------------~~ 53 (314)
+||||||+|++.++|++||+ +...+.++.|.|.++..+...+. ..
T Consensus 41 ~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~s~~~~~~p~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~ 120 (205)
T 3tyt_A 41 KPGAAMVEMADGYAVDRAITHLNNNFMFGQKMNVCVSKQPAIMPGQSYGLEDGSCSYKDFSESRNNRFSTPEQAAKNRIQ 120 (205)
T ss_dssp STTCEEEEESSHHHHHHHHHHHTTCEETTEECEEEECSCSCCCCCSCCBCTTSCBSEEECTTCTTCSCSSHHHHTTSCCC
T ss_pred CCCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEccCCccCCCcccccccCCccccccCCCccccccCcccccccccC
Confidence 58999999999999999998 55689999999998753211000 01
Q ss_pred CCcceEEEcCCCCCCCHHHHHHHHhccCCe--EEEEEeecCCCCCcceEEEEEeCChHHHHHHHHhcCCeeeCCe----E
Q 021295 54 FKTKKIFVGGIPSSVNEDEFKDFFMQFGDV--QEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGA----Q 127 (314)
Q Consensus 54 ~~~~~l~V~nLp~~~~e~~l~~~F~~~G~v--~~v~i~~~~~~g~~rG~afV~F~~~~~a~~a~~~l~~~~~~gr----~ 127 (314)
.+.++|||.|||++++|++|+++|++||.| ++|+|+.++ ++.+++|||+|++.++|++||+.||+.+|.++ +
T Consensus 121 ~p~~~l~v~NLp~~~t~~~L~~~F~~~G~v~~~~v~~~~~~--~~~~g~gfV~f~~~~~A~~Ai~~lng~~~~g~~~~~p 198 (205)
T 3tyt_A 121 HPSNVLHFFNAPLEVTEENFFEICDELGVKRPTSVKVFSGK--SERSSSGLLEWDSKSDALETLGFLNHYQMKNPNGPYP 198 (205)
T ss_dssp CCCSEEEEEEECTTCCHHHHHHHHHHHTCCCCSEEEECSCC--SSSSEEEEEECSSHHHHHHHHHHHTTCEECCSSSSSC
T ss_pred CCcceEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEEcCC--CCCceEEEEEeCCHHHHHHHHHHhCCCCccCCCCCcc
Confidence 345689999999999999999999999999 899998875 45679999999999999999999999999886 5
Q ss_pred EEEeec
Q 021295 128 VEVKKA 133 (314)
Q Consensus 128 l~V~~a 133 (314)
+.|++|
T Consensus 199 ~~vk~~ 204 (205)
T 3tyt_A 199 YTLKLC 204 (205)
T ss_dssp EECEEE
T ss_pred eEEEec
Confidence 777665
No 19
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.88 E-value=3.6e-22 Score=164.12 Aligned_cols=87 Identities=16% Similarity=0.248 Sum_probs=82.1
Q ss_pred CCCCcceEEEcCCCCCCCHHHHHHHHhccCCeEEEEEeecCCCCCcceEEEEEeCChHHHHHHHHhcCCeeeCCeEEEEe
Q 021295 52 KDFKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVK 131 (314)
Q Consensus 52 ~~~~~~~l~V~nLp~~~~e~~l~~~F~~~G~v~~v~i~~~~~~g~~rG~afV~F~~~~~a~~a~~~l~~~~~~gr~l~V~ 131 (314)
...+.++|||.|||++++|++|+++|++||+|+.|+|+.++.++++++||||+|+++++|++||+.||++.|.+++|+|+
T Consensus 35 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~ 114 (156)
T 1h2v_Z 35 LLKKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLDDRIIRTD 114 (156)
T ss_dssp TTTTCCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEETTEECEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 44567999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCCCCC
Q 021295 132 KAEPKKP 138 (314)
Q Consensus 132 ~a~~~~~ 138 (314)
+|++...
T Consensus 115 ~a~~~~~ 121 (156)
T 1h2v_Z 115 WDAGFKE 121 (156)
T ss_dssp EESCCCT
T ss_pred ECCCCCC
Confidence 9987543
No 20
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.88 E-value=3e-22 Score=152.09 Aligned_cols=83 Identities=25% Similarity=0.560 Sum_probs=79.2
Q ss_pred CCCcceEEEcCCCCCCCHHHHHHHHhccCCeEEEEEeecCCCCCcceEEEEEeCChHHHHHHHHhcCCeeeCCeEEEEee
Q 021295 53 DFKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVKK 132 (314)
Q Consensus 53 ~~~~~~l~V~nLp~~~~e~~l~~~F~~~G~v~~v~i~~~~~~g~~rG~afV~F~~~~~a~~a~~~l~~~~~~gr~l~V~~ 132 (314)
..+.++|||+|||+++||++|+++|++||+|++|+|++|+.++++++||||+|+++++|++||+.||+..|.+++|+|++
T Consensus 16 ~~~gt~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~gr~l~V~~ 95 (99)
T 4fxv_A 16 YFQGTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSY 95 (99)
T ss_dssp CCCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 34567899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCC
Q 021295 133 AEP 135 (314)
Q Consensus 133 a~~ 135 (314)
|+|
T Consensus 96 AkP 98 (99)
T 4fxv_A 96 ARP 98 (99)
T ss_dssp CCB
T ss_pred eeC
Confidence 975
No 21
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.88 E-value=7.2e-22 Score=172.37 Aligned_cols=122 Identities=17% Similarity=0.270 Sum_probs=105.5
Q ss_pred ccEEEEEECCHHHHHHHHH--ccCccCCcEEEEeecCCCCCCCC-------------------------------CCCCc
Q 021295 10 RGFGFVTYADPSVVDKVIE--DTHIINGKQVEIKRTIPKGAVGS-------------------------------KDFKT 56 (314)
Q Consensus 10 kG~aFV~f~~~~~a~~A~~--~~~~i~g~~i~v~~~~~~~~~~~-------------------------------~~~~~ 56 (314)
++||||+|.+.++|++|++ +...|.++.|.|+++.+...... ...+.
T Consensus 72 ~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (229)
T 2adc_A 72 KENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLSKHQNVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPS 151 (229)
T ss_dssp SCCEEEEESCHHHHHHHHHHHTTCBCSSSBCEEECCSCCCCCCCCSSSSTTTTEEECTTCSSCCCCSTTSGGGTTCCCSC
T ss_pred CCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEecCccccCccccccccccccccccCcccccCCccccccccCCCCC
Confidence 8999999999999999997 55688999999988765421110 12346
Q ss_pred ceEEEcCCCCCCCHHHHHHHHhccC-CeEEEEEeecCCCCCcceEEEEEeCChHHHHHHHHhcCCeeeC-CeEEEEeecC
Q 021295 57 KKIFVGGIPSSVNEDEFKDFFMQFG-DVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELA-GAQVEVKKAE 134 (314)
Q Consensus 57 ~~l~V~nLp~~~~e~~l~~~F~~~G-~v~~v~i~~~~~~g~~rG~afV~F~~~~~a~~a~~~l~~~~~~-gr~l~V~~a~ 134 (314)
++|||.|||+++++++|+++|++|| +|+.|+|+.+ .++||||+|++.++|++||+.||+..|. +++|+|++++
T Consensus 152 ~~l~V~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~-----~~g~afV~f~~~~~A~~Ai~~l~g~~~~~g~~l~v~~a~ 226 (229)
T 2adc_A 152 ATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQK-----DRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFSK 226 (229)
T ss_dssp SEEEEECCCTTCCHHHHHHHHHTTSCCEEEEEECSS-----STTCEEEEESSHHHHHHHHHHHTTCBSSSSCBCEEEECS
T ss_pred CEEEEeCCCccCCHHHHHHHHHHcCCCeeEEEEEEC-----CCcEEEEEECCHHHHHHHHHHHCCCccCCCCeEEEEEec
Confidence 8999999999999999999999999 9999999764 3689999999999999999999999999 9999999998
Q ss_pred CC
Q 021295 135 PK 136 (314)
Q Consensus 135 ~~ 136 (314)
++
T Consensus 227 ~~ 228 (229)
T 2adc_A 227 ST 228 (229)
T ss_dssp SC
T ss_pred CC
Confidence 64
No 22
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.88 E-value=1.2e-21 Score=176.05 Aligned_cols=122 Identities=15% Similarity=0.308 Sum_probs=112.7
Q ss_pred CCcccEEEEEECCHHHHHHHHH--ccCccCCcEEEEeecCCCCCCCCCCCCcceEEEcCCCCCCCHHHHHHHHhccCCeE
Q 021295 7 GQPRGFGFVTYADPSVVDKVIE--DTHIINGKQVEIKRTIPKGAVGSKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQ 84 (314)
Q Consensus 7 g~~kG~aFV~f~~~~~a~~A~~--~~~~i~g~~i~v~~~~~~~~~~~~~~~~~~l~V~nLp~~~~e~~l~~~F~~~G~v~ 84 (314)
++++|||||+|.++++|++|++ +...+.++.|.|.++. ...+|||.|||+++++++|+++|++||+|+
T Consensus 54 ~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v~~~~----------~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~ 123 (284)
T 3smz_A 54 DKYKGTAFVTLLNGEQAEAAINAFHQSRLRERELSVQLQP----------TDALLCVANLPPSLTQQQFEELVRPFGSLE 123 (284)
T ss_dssp ETTTTEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC----------CSCEEEEESCCTTCCHHHHHHHHGGGSCEE
T ss_pred ecCCCEEEEEeCCHHHHHHHHHHcCCCeeCCeEEEEEecC----------CCCEEEEcCCCCcCCHHHHHHHHHhcCCee
Confidence 5789999999999999999997 5558899999998743 347999999999999999999999999999
Q ss_pred EEEEeecCCCCCcceEEEEEeCChHHHHHHHHhcCCeeeCCeEEEEeecCCCCC
Q 021295 85 EHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVKKAEPKKP 138 (314)
Q Consensus 85 ~v~i~~~~~~g~~rG~afV~F~~~~~a~~a~~~l~~~~~~gr~l~V~~a~~~~~ 138 (314)
.|.|+.++.++++++||||+|+++++|++|++.|++..|.+++|.|.++.+...
T Consensus 124 ~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~a~~~~~ 177 (284)
T 3smz_A 124 RCFLVYSERTGQSKGYGFAEYMKKDSAARAKSDLLGKPLGPRTLYVHWTDAGQL 177 (284)
T ss_dssp EEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCGGGC
T ss_pred EEEEEeeCCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEECCCCCC
Confidence 999999999999999999999999999999999999999999999999987654
No 23
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.87 E-value=9.5e-22 Score=174.99 Aligned_cols=121 Identities=21% Similarity=0.383 Sum_probs=108.5
Q ss_pred CCcccEEEEEECCHHHHHHHHH--ccCccCCcEEEEeecCCCCCCCCCCCCcceEEEcCCCCCCCHHHHHHHHhccCCeE
Q 021295 7 GQPRGFGFVTYADPSVVDKVIE--DTHIINGKQVEIKRTIPKGAVGSKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQ 84 (314)
Q Consensus 7 g~~kG~aFV~f~~~~~a~~A~~--~~~~i~g~~i~v~~~~~~~~~~~~~~~~~~l~V~nLp~~~~e~~l~~~F~~~G~v~ 84 (314)
.++|+||||+|.+.++|++|++ +...|.++.|.|+++.+ .++|||.|||+++|+++|+++|++||+|+
T Consensus 55 ~~~kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~a~~----------~~~l~v~nl~~~~t~~~l~~~F~~~G~i~ 124 (261)
T 3sde_A 55 NRDRGFGFIRLESRTLAEIAKAELDGTILKSRPLRIRFATH----------GAALTVKNLSPVVSNELLEQAFSQFGPVE 124 (261)
T ss_dssp ETTTTEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECCC----------SSEEEEESCCTTCCHHHHHHHHGGGSCEE
T ss_pred eCCCcEEEEEECCHHHHHHHHHHcCCcEECCceeEeeeccc----------CCcccccCCCCCCCHHHHHHHHHhcCCeE
Confidence 4679999999999999999998 55688999999998753 57899999999999999999999999999
Q ss_pred EEEEeecCCCCCcceEEEEEeCChHHHHHHHHhc-CCeeeC---CeEEEEeecCCCCC
Q 021295 85 EHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKG-NKLELA---GAQVEVKKAEPKKP 138 (314)
Q Consensus 85 ~v~i~~~~~~g~~rG~afV~F~~~~~a~~a~~~l-~~~~~~---gr~l~V~~a~~~~~ 138 (314)
.|.|+.+ .++++++||||+|++.++|++||+.| +...+. +++|.|+++.+...
T Consensus 125 ~v~i~~~-~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~r~i~v~~~~~~~~ 181 (261)
T 3sde_A 125 KAVVVVD-DRGRATGKGFVEFAAKPPARKALERCGDGAFLLTTTPRPVIVEPMEQFDD 181 (261)
T ss_dssp EEEEEEE-TTSCEEEEEEEEESSHHHHHHHHHHHHHSCEESSSSCCBCEEEECCCEES
T ss_pred EEEeeeC-CCCCcCcEEEEEeCCHHHHHHHHHHhcCCeEEecCCCceEEEeeccccCc
Confidence 9999999 68999999999999999999999999 455554 89999999887644
No 24
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.87 E-value=7.6e-22 Score=167.93 Aligned_cols=122 Identities=17% Similarity=0.272 Sum_probs=105.4
Q ss_pred ccEEEEEECCHHHHHHHHH--ccCccCCcEEEEeecCCCCCCC-------------------------------CCCCCc
Q 021295 10 RGFGFVTYADPSVVDKVIE--DTHIINGKQVEIKRTIPKGAVG-------------------------------SKDFKT 56 (314)
Q Consensus 10 kG~aFV~f~~~~~a~~A~~--~~~~i~g~~i~v~~~~~~~~~~-------------------------------~~~~~~ 56 (314)
++||||+|.++++|++|++ +...+.++.|.|.++.+..... ....+.
T Consensus 41 ~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~ 120 (198)
T 1qm9_A 41 KENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLSKHQNVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPS 120 (198)
T ss_dssp SSCCEEECTTTHHHHHHHHHHTTCCCSSCCCEEEECCCCSCCCSSSSSSSSSCEEESSCCCTTSSSSCCCCCCSCCCCCC
T ss_pred CCEEEEEECCHHHHHHHHHHhCCCeecCeEEEEEEecCCCcCCCCcCCccccccccccCCchhhccCccccccccCCCCc
Confidence 8999999999999999998 5568899999998876442110 012347
Q ss_pred ceEEEcCCCCCCCHHHHHHHHhccC-CeEEEEEeecCCCCCcceEEEEEeCChHHHHHHHHhcCCeeeC-CeEEEEeecC
Q 021295 57 KKIFVGGIPSSVNEDEFKDFFMQFG-DVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELA-GAQVEVKKAE 134 (314)
Q Consensus 57 ~~l~V~nLp~~~~e~~l~~~F~~~G-~v~~v~i~~~~~~g~~rG~afV~F~~~~~a~~a~~~l~~~~~~-gr~l~V~~a~ 134 (314)
++|||.|||+++++++|+++|++|| +|+.|+|+++ .+++|||+|+++++|++|++.||+..|. +++|+|.+++
T Consensus 121 ~~l~v~nl~~~~~~~~l~~~f~~~G~~v~~v~i~~~-----~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~a~ 195 (198)
T 1qm9_A 121 ATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQK-----DRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFSK 195 (198)
T ss_dssp CEEEECCCCTTCCHHHHHHHHHHTTSCCCEEEESST-----TSSCEEEECSSHHHHHHHHHHHTSSCCSSCCSCCEEEEC
T ss_pred cEEEEeCCCCCCCHHHHHHHHHHcCCCceEEEEEeC-----CCcEEEEEeCCHHHHHHHHHHhcCCccCCCCeEEEEeec
Confidence 8999999999999999999999999 9999999765 2789999999999999999999999999 9999999988
Q ss_pred CC
Q 021295 135 PK 136 (314)
Q Consensus 135 ~~ 136 (314)
++
T Consensus 196 ~~ 197 (198)
T 1qm9_A 196 ST 197 (198)
T ss_dssp CC
T ss_pred cc
Confidence 64
No 25
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.86 E-value=1.2e-20 Score=146.96 Aligned_cols=90 Identities=22% Similarity=0.484 Sum_probs=84.3
Q ss_pred CCCCCcceEEEcCCCCCCCHHHHHHHHhccCCeEEEEEeecCCCCCcceEEEEEeCChHHHHHHHHhcCCeeeCCeEEEE
Q 021295 51 SKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEV 130 (314)
Q Consensus 51 ~~~~~~~~l~V~nLp~~~~e~~l~~~F~~~G~v~~v~i~~~~~~g~~rG~afV~F~~~~~a~~a~~~l~~~~~~gr~l~V 130 (314)
.+..+.++|||.|||+++++++|+++|++||+|+.|+|++++.++++++||||+|+++++|++||+.||+..|.++.|+|
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 89 (115)
T 2dgo_A 10 KDTSNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRT 89 (115)
T ss_dssp CCSTTCEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEE
T ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCEEEEE
Confidence 35567899999999999999999999999999999999999989999999999999999999999999999999999999
Q ss_pred eecCCCCCCC
Q 021295 131 KKAEPKKPNL 140 (314)
Q Consensus 131 ~~a~~~~~~~ 140 (314)
+++.++....
T Consensus 90 ~~a~~~~~~~ 99 (115)
T 2dgo_A 90 NWATRKPPAP 99 (115)
T ss_dssp EESSCCCCCS
T ss_pred EEccCCCCCC
Confidence 9999876543
No 26
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.86 E-value=3.7e-21 Score=149.89 Aligned_cols=91 Identities=19% Similarity=0.428 Sum_probs=84.4
Q ss_pred CCCCCcceEEEcCCCCCCCHHHHHHHHhccCCeEEEEEeecCCCCCcceEEEEEeCChHHHHHHHHhcCCeeeCCeEEEE
Q 021295 51 SKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEV 130 (314)
Q Consensus 51 ~~~~~~~~l~V~nLp~~~~e~~l~~~F~~~G~v~~v~i~~~~~~g~~rG~afV~F~~~~~a~~a~~~l~~~~~~gr~l~V 130 (314)
....+.++|||.|||+++++++|+++|++||+|++|+|++++.++++++||||+|+++++|++||+.||+..|.+++|+|
T Consensus 20 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 99 (115)
T 2cpz_A 20 KEGPEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLKV 99 (115)
T ss_dssp CCCSTTCCEEEESCCSSCCHHHHHHHHGGGSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEE
T ss_pred cCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCCEECCEEEEE
Confidence 34556789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eecCCCCCCCC
Q 021295 131 KKAEPKKPNLP 141 (314)
Q Consensus 131 ~~a~~~~~~~~ 141 (314)
+++.++....+
T Consensus 100 ~~a~~~~~~~~ 110 (115)
T 2cpz_A 100 QLKRSKNDSKS 110 (115)
T ss_dssp ECCCCSCCCCC
T ss_pred EEcCCCCcCCC
Confidence 99998765443
No 27
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.86 E-value=2.8e-21 Score=149.56 Aligned_cols=84 Identities=15% Similarity=0.285 Sum_probs=80.2
Q ss_pred CCcceEEEcCCCCCCCHHHHHHHHhccCCeEEEEEeecCCCCCcceEEEEEeCChHHHHHHHHhcCCeeeCCeEEEEeec
Q 021295 54 FKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVKKA 133 (314)
Q Consensus 54 ~~~~~l~V~nLp~~~~e~~l~~~F~~~G~v~~v~i~~~~~~g~~rG~afV~F~~~~~a~~a~~~l~~~~~~gr~l~V~~a 133 (314)
.+.++|||+|||++++|++|+++|++||+|++|+|++|+.|++++|||||+|++.++|++||+.||+..|.+++|+|++|
T Consensus 4 ~p~~~lfV~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~~gr~i~V~~a 83 (110)
T 3s8s_A 4 IPLKEVTFARLNDNVRETFLKDMCRKYGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSVMGNIIHAQLD 83 (110)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCcEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 45789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCC
Q 021295 134 EPKK 137 (314)
Q Consensus 134 ~~~~ 137 (314)
...+
T Consensus 84 ~~~~ 87 (110)
T 3s8s_A 84 IKGQ 87 (110)
T ss_dssp STTH
T ss_pred CCCc
Confidence 7654
No 28
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.86 E-value=3e-21 Score=174.11 Aligned_cols=118 Identities=14% Similarity=0.236 Sum_probs=102.2
Q ss_pred cccEEEEEECCHHHHHHHHH-ccCccCCcEEEEeecCCCCCCCCCCCCcceEEEcCCCCCCCHHHHHHHHhccC-CeEEE
Q 021295 9 PRGFGFVTYADPSVVDKVIE-DTHIINGKQVEIKRTIPKGAVGSKDFKTKKIFVGGIPSSVNEDEFKDFFMQFG-DVQEH 86 (314)
Q Consensus 9 ~kG~aFV~f~~~~~a~~A~~-~~~~i~g~~i~v~~~~~~~~~~~~~~~~~~l~V~nLp~~~~e~~l~~~F~~~G-~v~~v 86 (314)
+++||||+|.++++|++|++ +...+.++.|.|.++ +.++|||.|||+++++++|+++|++|| +|+.|
T Consensus 80 ~~g~afV~f~~~~~A~~A~~~~~~~~~g~~i~v~~~-----------~~~~l~v~nlp~~~t~~~l~~~f~~~G~~i~~v 148 (292)
T 2ghp_A 80 NFRFARIEFARYDGALAAITKTHKVVGQNEIIVSHL-----------TECTLWMTNFPPSYTQRNIRDLLQDINVVALSI 148 (292)
T ss_dssp SSEEEEEEESSHHHHHHHHTTTTCEETTEECEEEEC-----------CSCEEEEECCCTTCCHHHHHHHHHHTTCCCCEE
T ss_pred CcEEEEEEECCHHHHHHHHHhCCcEeCCcEEEEEEC-----------CCCEEEEECCCCCCCHHHHHHHHHHhCCCeEEE
Confidence 58999999999999999997 556889999999875 368999999999999999999999999 99999
Q ss_pred EEeecCCCCCcceEEEEEeCChHHHHHHHHhcCCeeeCCeEEEEeecCCCCC
Q 021295 87 QIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVKKAEPKKP 138 (314)
Q Consensus 87 ~i~~~~~~g~~rG~afV~F~~~~~a~~a~~~l~~~~~~gr~l~V~~a~~~~~ 138 (314)
.|+.++. +++++||||+|.++++|++|++.||+..|.+++|.|.++.+...
T Consensus 149 ~i~~~~~-~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~ 199 (292)
T 2ghp_A 149 RLPSLRF-NTSRRFAYIDVTSKEDARYCVEKLNGLKIEGYTLVTKVSNPLEK 199 (292)
T ss_dssp ECC--------CCEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECCCC--
T ss_pred EEEeCCC-CCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEECCCCcc
Confidence 9998865 77899999999999999999999999999999999999887654
No 29
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.85 E-value=1e-21 Score=146.75 Aligned_cols=83 Identities=24% Similarity=0.534 Sum_probs=77.5
Q ss_pred cceEEEcCCCCCCCHHHHHHHHhccC-CeEEEEEeecCCCCCcceEEEEEeCChHHHHHHHHhc-CCeeeCCeEEEEeec
Q 021295 56 TKKIFVGGIPSSVNEDEFKDFFMQFG-DVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKG-NKLELAGAQVEVKKA 133 (314)
Q Consensus 56 ~~~l~V~nLp~~~~e~~l~~~F~~~G-~v~~v~i~~~~~~g~~rG~afV~F~~~~~a~~a~~~l-~~~~~~gr~l~V~~a 133 (314)
+++|||+|||+++||++|+++|++|| +|++|+|++|+.|+++|+||||+|+++++|++||+.+ +.+.|.+++|.|++|
T Consensus 1 S~~i~v~nLp~~~te~~l~~~F~~~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~gr~i~V~~a 80 (91)
T 2lxi_A 1 SNIVMLRMLPQAATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNILGQKVSMHYS 80 (91)
T ss_dssp CCEEEEETCCSSCCHHHHHHHHHHHTCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEETTEEEEEECC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHhCCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEECCEEEEEEEc
Confidence 47899999999999999999999999 8999999999999999999999999999999999987 567899999999999
Q ss_pred CCCCC
Q 021295 134 EPKKP 138 (314)
Q Consensus 134 ~~~~~ 138 (314)
.+++.
T Consensus 81 ~~~~~ 85 (91)
T 2lxi_A 81 DPKPK 85 (91)
T ss_dssp CSCCC
T ss_pred CCCCC
Confidence 87654
No 30
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.85 E-value=1e-20 Score=143.30 Aligned_cols=88 Identities=20% Similarity=0.351 Sum_probs=83.0
Q ss_pred CCCCcceEEEcCCCCCCCHHHHHHHHhccCCeEEEEEeecCCCCCcceEEEEEeCChHHHHHHHHhcCCeeeCCeEEEEe
Q 021295 52 KDFKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVK 131 (314)
Q Consensus 52 ~~~~~~~l~V~nLp~~~~e~~l~~~F~~~G~v~~v~i~~~~~~g~~rG~afV~F~~~~~a~~a~~~l~~~~~~gr~l~V~ 131 (314)
...+.++|||.|||+++++++|+++|++||+|++|+|+.++.++++++||||+|+++++|++||+.||+..|.+++|+|+
T Consensus 4 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 83 (99)
T 1whw_A 4 GSSGSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRMLHVL 83 (99)
T ss_dssp CCCSCEEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEESSSCEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCEECCcEEEEE
Confidence 34567899999999999999999999999999999999999899999999999999999999999999999999999999
Q ss_pred ecCCCCCC
Q 021295 132 KAEPKKPN 139 (314)
Q Consensus 132 ~a~~~~~~ 139 (314)
++.+++..
T Consensus 84 ~a~~~~~~ 91 (99)
T 1whw_A 84 PSTIKKEA 91 (99)
T ss_dssp ECCCCSTT
T ss_pred EcCCCccc
Confidence 99987654
No 31
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.85 E-value=7.5e-21 Score=145.14 Aligned_cols=90 Identities=20% Similarity=0.380 Sum_probs=84.1
Q ss_pred CCCCCcceEEEcCCCCCCCHHHHHHHHhccCCeEEEEEeecCCCCCcceEEEEEeCChHHHHHHHHhcCCeeeCCeEEEE
Q 021295 51 SKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEV 130 (314)
Q Consensus 51 ~~~~~~~~l~V~nLp~~~~e~~l~~~F~~~G~v~~v~i~~~~~~g~~rG~afV~F~~~~~a~~a~~~l~~~~~~gr~l~V 130 (314)
.+..+.++|||.|||+++++++|+++|++||+|+.|.|+.++.++++++||||+|+++++|++||+.||+..|.+++|+|
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v 89 (103)
T 2cq0_A 10 RRADDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDHLILNV 89 (103)
T ss_dssp CCCSSSEEEEEESCCTTCCHHHHHTTSTTTCCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCCCeeCCcEEEE
Confidence 34567899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eecCCCCCCC
Q 021295 131 KKAEPKKPNL 140 (314)
Q Consensus 131 ~~a~~~~~~~ 140 (314)
+++.++....
T Consensus 90 ~~a~~~~~~~ 99 (103)
T 2cq0_A 90 EWAKPSTNSG 99 (103)
T ss_dssp EESSCCCCSC
T ss_pred EECCCCCCCC
Confidence 9999876543
No 32
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.85 E-value=8.5e-21 Score=143.75 Aligned_cols=89 Identities=44% Similarity=0.765 Sum_probs=82.8
Q ss_pred CCCCCcceEEEcCCCCCCCHHHHHHHHhccCCeEEEEEeecCCCCCcceEEEEEeCChHHHHHHHHhcCCeeeCCeEEEE
Q 021295 51 SKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEV 130 (314)
Q Consensus 51 ~~~~~~~~l~V~nLp~~~~e~~l~~~F~~~G~v~~v~i~~~~~~g~~rG~afV~F~~~~~a~~a~~~l~~~~~~gr~l~V 130 (314)
....+.++|||.|||+++++++|+++|++||+|++|.|++++.++++++||||+|+++++|++||+ ||...|.+++|+|
T Consensus 5 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~l~V 83 (99)
T 2dgs_A 5 SSGSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVN-MHFHDIMGKKVEV 83 (99)
T ss_dssp CCCSSCCEEEEESCCSSCCHHHHHHHHSSSSCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHH-HCCCBSSSCBCEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHH-hCCCEECCeEEEE
Confidence 345678999999999999999999999999999999999999999999999999999999999999 8999999999999
Q ss_pred eecCCCCCCC
Q 021295 131 KKAEPKKPNL 140 (314)
Q Consensus 131 ~~a~~~~~~~ 140 (314)
+++.++....
T Consensus 84 ~~a~~~~~~~ 93 (99)
T 2dgs_A 84 KRAEPRDSKS 93 (99)
T ss_dssp EECCCCCCCC
T ss_pred EECCCCcccC
Confidence 9999876543
No 33
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.85 E-value=2.7e-20 Score=145.21 Aligned_cols=89 Identities=30% Similarity=0.561 Sum_probs=82.3
Q ss_pred CCCCCCcceEEEcCCCCCCCHHHHHHHHhccCCeEEEEEeecCCCCCcceEEEEEeCChHHHHHHHHhcCCeeeCCeEEE
Q 021295 50 GSKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVE 129 (314)
Q Consensus 50 ~~~~~~~~~l~V~nLp~~~~e~~l~~~F~~~G~v~~v~i~~~~~~g~~rG~afV~F~~~~~a~~a~~~l~~~~~~gr~l~ 129 (314)
..++.+.++|||.|||++++|++|+++|++||+|++|+|++++.++++++||||+|+++++|++||+.|+. .|.+++|+
T Consensus 11 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~-~~~g~~l~ 89 (116)
T 2cqd_A 11 SQKDTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNP-IIDGRKAN 89 (116)
T ss_dssp CCCSCSSSEEEEECCCSSCCHHHHHHHHHTTSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSC-EETTEECE
T ss_pred CcCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCC-cCCCEEEE
Confidence 34566789999999999999999999999999999999999999999999999999999999999999998 89999999
Q ss_pred EeecCCCCCC
Q 021295 130 VKKAEPKKPN 139 (314)
Q Consensus 130 V~~a~~~~~~ 139 (314)
|+++.+....
T Consensus 90 V~~a~~~~~~ 99 (116)
T 2cqd_A 90 VNLAYLGAKP 99 (116)
T ss_dssp EEESTTTCCC
T ss_pred EEEcccCCCc
Confidence 9999876433
No 34
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.85 E-value=6.2e-21 Score=145.57 Aligned_cols=89 Identities=24% Similarity=0.367 Sum_probs=83.4
Q ss_pred CCCCcceEEEcCCCCCCCHHHHHHHHhccCCeEEEEEeecCCCCCcceEEEEEeCChHHHHHHHHhcCCeeeCCeEEEEe
Q 021295 52 KDFKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVK 131 (314)
Q Consensus 52 ~~~~~~~l~V~nLp~~~~e~~l~~~F~~~G~v~~v~i~~~~~~g~~rG~afV~F~~~~~a~~a~~~l~~~~~~gr~l~V~ 131 (314)
...+.++|||.|||+++++++|+++|++||+|+.|.|+.++.++++++||||+|+++++|++||+.||+..|.+++|+|+
T Consensus 9 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~ 88 (103)
T 2dnm_A 9 DVDGMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAELDGRELRVQ 88 (103)
T ss_dssp CCSCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCBTTBCCEEE
T ss_pred CCCCCeEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEE
Confidence 45567999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCCCCCCC
Q 021295 132 KAEPKKPNL 140 (314)
Q Consensus 132 ~a~~~~~~~ 140 (314)
++.+..+..
T Consensus 89 ~a~~~~~~~ 97 (103)
T 2dnm_A 89 VARYGRRDL 97 (103)
T ss_dssp ECSSCCSCC
T ss_pred ECCcCCCCC
Confidence 999876543
No 35
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.85 E-value=5.2e-21 Score=158.71 Aligned_cols=126 Identities=17% Similarity=0.245 Sum_probs=81.4
Q ss_pred EEECCHHHHHHHHHccCc----cCCcEEEEeecCC----------------CCCCCCCCCCcceEEEcCCCCCCCHHHHH
Q 021295 15 VTYADPSVVDKVIEDTHI----INGKQVEIKRTIP----------------KGAVGSKDFKTKKIFVGGIPSSVNEDEFK 74 (314)
Q Consensus 15 V~f~~~~~a~~A~~~~~~----i~g~~i~v~~~~~----------------~~~~~~~~~~~~~l~V~nLp~~~~e~~l~ 74 (314)
++|++.++|+.|+..+.. ..++.+...+... ....+....+.++|||.|||+++++++|+
T Consensus 11 ee~e~~~d~e~~~~~~~~~~~~~kgr~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~ 90 (165)
T 1rk8_A 11 EEFEVDEDGDQGIVRLKEKAKHRKGRGFGSDSNTREAIHSYERVRNEDDDELEPGPQRSVEGWILFVTSIHEEAQEDEIQ 90 (165)
T ss_dssp -------------------------------------------------------CCCCC-CEEEEEESCCTTCCHHHHH
T ss_pred hhhhccccccccchhhccccccccCCCCCCCccccccccCccccccCCCCCCCCCCCCCCCCCEEEEeCCCCCCCHHHHH
Confidence 788889998888874321 1122222221100 11112234556789999999999999999
Q ss_pred HHHhccCCeEEEEEeecCCCCCcceEEEEEeCChHHHHHHHHhcCCeeeCCeEEEEeecCCCCCCC
Q 021295 75 DFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVKKAEPKKPNL 140 (314)
Q Consensus 75 ~~F~~~G~v~~v~i~~~~~~g~~rG~afV~F~~~~~a~~a~~~l~~~~~~gr~l~V~~a~~~~~~~ 140 (314)
++|++||+|+.|.|+.++.++++++||||+|++.++|++||+.||++.|.+++|.|.++.++.+..
T Consensus 91 ~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~~~~~ 156 (165)
T 1rk8_A 91 EKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDWCFVKGPKR 156 (165)
T ss_dssp HHHGGGSCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEESEECC---
T ss_pred HHhhcCCCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEecCCCCCC
Confidence 999999999999999999999999999999999999999999999999999999999998776543
No 36
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.85 E-value=1.7e-20 Score=144.97 Aligned_cols=90 Identities=26% Similarity=0.417 Sum_probs=83.9
Q ss_pred CCCCCcceEEEcCCCCCCCHHHHHHHHhccCCeEEEEEeecCCCCCcceEEEEEeCChHHHHHHHHhcC------CeeeC
Q 021295 51 SKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGN------KLELA 124 (314)
Q Consensus 51 ~~~~~~~~l~V~nLp~~~~e~~l~~~F~~~G~v~~v~i~~~~~~g~~rG~afV~F~~~~~a~~a~~~l~------~~~~~ 124 (314)
....+.++|||.|||+++++++|+++|++||+|+.|+|++++.++++++||||+|++.++|++||+.|| .+.|.
T Consensus 10 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~~~~ 89 (111)
T 1x4h_A 10 SDVTEGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLKLD 89 (111)
T ss_dssp CCCCCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEESS
T ss_pred CcCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhccccccCCcEEc
Confidence 345678899999999999999999999999999999999999999999999999999999999999999 99999
Q ss_pred CeEEEEeecCCCCCCC
Q 021295 125 GAQVEVKKAEPKKPNL 140 (314)
Q Consensus 125 gr~l~V~~a~~~~~~~ 140 (314)
+++|+|+++.++....
T Consensus 90 g~~l~v~~a~~~~~~~ 105 (111)
T 1x4h_A 90 GRQLKVDLAVTRDEAA 105 (111)
T ss_dssp SCEEEEECCCCCCCCC
T ss_pred CEEEEEEECCCCccCC
Confidence 9999999999876543
No 37
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.84 E-value=1.2e-20 Score=144.46 Aligned_cols=89 Identities=27% Similarity=0.506 Sum_probs=83.6
Q ss_pred CCCCCcceEEEcCCCCCCCHHHHHHHHhccCCeEEEEEeecCCCCCcceEEEEEeCChHHHHHHHHhcCCeeeCCeEEEE
Q 021295 51 SKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEV 130 (314)
Q Consensus 51 ~~~~~~~~l~V~nLp~~~~e~~l~~~F~~~G~v~~v~i~~~~~~g~~rG~afV~F~~~~~a~~a~~~l~~~~~~gr~l~V 130 (314)
.+..+.++|||.|||+++++++|+++|++||+|++|.|+.++.++++++||||+|+++++|++||+.||+..|.+++|+|
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 89 (105)
T 1x5u_A 10 SERNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLYGKPIRV 89 (105)
T ss_dssp CCCCTTTEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBCSSCBCEE
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEE
Confidence 45567899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eecCCCCCC
Q 021295 131 KKAEPKKPN 139 (314)
Q Consensus 131 ~~a~~~~~~ 139 (314)
+++.+++..
T Consensus 90 ~~a~~~~~~ 98 (105)
T 1x5u_A 90 NKASAHNKN 98 (105)
T ss_dssp EETTTTSCC
T ss_pred EECCCCCcC
Confidence 999887654
No 38
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.84 E-value=7.7e-21 Score=144.74 Aligned_cols=89 Identities=27% Similarity=0.517 Sum_probs=83.5
Q ss_pred CCCCcceEEEcCCCCCCCHHHHHHHHhccCCeEEEEEeecCCCCCcceEEEEEeCChHHHHHHHHhcCCeeeCCeEEEEe
Q 021295 52 KDFKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVK 131 (314)
Q Consensus 52 ~~~~~~~l~V~nLp~~~~e~~l~~~F~~~G~v~~v~i~~~~~~g~~rG~afV~F~~~~~a~~a~~~l~~~~~~gr~l~V~ 131 (314)
...+.++|||.|||+++++++|+++|++||+|++|+|++++.++++++||||+|+++++|++||+.||+..|.+++|+|+
T Consensus 8 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~ 87 (102)
T 2cqb_A 8 MATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVN 87 (102)
T ss_dssp SCCCCSCEEEESCCSSCCHHHHHHHHTTTSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEETTEEEEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHhhccCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEE
Confidence 34567899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCCCCCCC
Q 021295 132 KAEPKKPNL 140 (314)
Q Consensus 132 ~a~~~~~~~ 140 (314)
++.++....
T Consensus 88 ~a~~~~~~~ 96 (102)
T 2cqb_A 88 LAKPMRIKE 96 (102)
T ss_dssp ECCCCCCCC
T ss_pred eCCCCCCCC
Confidence 999876554
No 39
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.84 E-value=1.2e-20 Score=141.67 Aligned_cols=86 Identities=29% Similarity=0.559 Sum_probs=81.3
Q ss_pred CCcceEEEcCCCCCCCHHHHHHHHhccCCeEEEEEeecCCCCCcceEEEEEeCChHHHHHHHHhcCCeeeCCeEEEEeec
Q 021295 54 FKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVKKA 133 (314)
Q Consensus 54 ~~~~~l~V~nLp~~~~e~~l~~~F~~~G~v~~v~i~~~~~~g~~rG~afV~F~~~~~a~~a~~~l~~~~~~gr~l~V~~a 133 (314)
.++++|||.|||+++++++|+++|++||+|++|+|++++.++++++||||+|+++++|++||+.||+..|.+++|+|+++
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 82 (95)
T 2dnz_A 3 SGSSGLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPMRVGHV 82 (95)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEEES
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEc
Confidence 45789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCC
Q 021295 134 EPKKPN 139 (314)
Q Consensus 134 ~~~~~~ 139 (314)
.++...
T Consensus 83 ~~~~~~ 88 (95)
T 2dnz_A 83 TERLDG 88 (95)
T ss_dssp SCCCCC
T ss_pred ccccCC
Confidence 876543
No 40
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.84 E-value=2.3e-20 Score=141.63 Aligned_cols=87 Identities=15% Similarity=0.458 Sum_probs=81.5
Q ss_pred CCCCCcceEEEcCCCCCCCHHHHHHHHhccCCeEEEEEeecCCCCCcceEEEEEeCChHHHHHHHHhcCCeeeCCeEEEE
Q 021295 51 SKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEV 130 (314)
Q Consensus 51 ~~~~~~~~l~V~nLp~~~~e~~l~~~F~~~G~v~~v~i~~~~~~g~~rG~afV~F~~~~~a~~a~~~l~~~~~~gr~l~V 130 (314)
....+.++|||.|||+++++++|+++|++||+|++|+|+.++ ++++++||||+|+++++|++||+.||+..|.+++|+|
T Consensus 12 ~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 90 (100)
T 2do4_A 12 STSLEKHKLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNR-AGKPKGLAYVEYENESQASQAVMKMDGMTIKENIIKV 90 (100)
T ss_dssp SSCCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTEESSSCEEEE
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECC-CCCEEeEEEEEECCHHHHHHHHHHhCCCEECCEEEEE
Confidence 355678999999999999999999999999999999999997 8999999999999999999999999999999999999
Q ss_pred eecCCCCC
Q 021295 131 KKAEPKKP 138 (314)
Q Consensus 131 ~~a~~~~~ 138 (314)
+++.++..
T Consensus 91 ~~a~~~~~ 98 (100)
T 2do4_A 91 AISNSGPS 98 (100)
T ss_dssp EECCCCSC
T ss_pred EECCCCCC
Confidence 99987643
No 41
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.84 E-value=1.8e-20 Score=143.92 Aligned_cols=91 Identities=26% Similarity=0.445 Sum_probs=84.2
Q ss_pred CCCCCCcceEEEcCCCCCCCHHHHHHHHhccCCeEEEEEeec-CCCCCcceEEEEEeCChHHHHHHHHhc-CCeeeCCeE
Q 021295 50 GSKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRD-HSTSRSRGFGFITFDTEQAVDDLLAKG-NKLELAGAQ 127 (314)
Q Consensus 50 ~~~~~~~~~l~V~nLp~~~~e~~l~~~F~~~G~v~~v~i~~~-~~~g~~rG~afV~F~~~~~a~~a~~~l-~~~~~~gr~ 127 (314)
...+.+.++|||.|||+++++++|+++|++||+|+.|+|+++ +.++++++||||+|+++++|++||+.| |...|.+++
T Consensus 9 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~~g~~ 88 (107)
T 2cph_A 9 VPKKQTTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLYGRR 88 (107)
T ss_dssp SCCSSCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBSSSCB
T ss_pred cccCCCCCEEEEeCCCCcCCHHHHHHHHHccCCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCeECCCE
Confidence 345667899999999999999999999999999999999999 789999999999999999999999999 999999999
Q ss_pred EEEeecCCCCCCC
Q 021295 128 VEVKKAEPKKPNL 140 (314)
Q Consensus 128 l~V~~a~~~~~~~ 140 (314)
|+|+++.++....
T Consensus 89 l~v~~a~~~~~~~ 101 (107)
T 2cph_A 89 LVLEWADSEVTVQ 101 (107)
T ss_dssp CEEEECCCCCCCC
T ss_pred EEEEeCCCCCCCC
Confidence 9999999876543
No 42
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.84 E-value=2.7e-20 Score=139.66 Aligned_cols=85 Identities=22% Similarity=0.443 Sum_probs=80.7
Q ss_pred CCCCCcceEEEcCCCCCCCHHHHHHHHhccCCeEEEEEeecCCCCCcceEEEEEeCChHHHHHHHHhcCCeeeCCeEEEE
Q 021295 51 SKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEV 130 (314)
Q Consensus 51 ~~~~~~~~l~V~nLp~~~~e~~l~~~F~~~G~v~~v~i~~~~~~g~~rG~afV~F~~~~~a~~a~~~l~~~~~~gr~l~V 130 (314)
....+.++|||.|||+++++++|+++|++||+|++|.|++++.++++++||||+|+++++|++||+.||+..|.+++|+|
T Consensus 10 ~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v 89 (95)
T 2cqc_A 10 ANPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRV 89 (95)
T ss_dssp CSCCGGGCEEEESCCSSCCHHHHHHHHHTTSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEEE
T ss_pred CCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEE
Confidence 45567899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eecCC
Q 021295 131 KKAEP 135 (314)
Q Consensus 131 ~~a~~ 135 (314)
+++++
T Consensus 90 ~~a~~ 94 (95)
T 2cqc_A 90 SGPSS 94 (95)
T ss_dssp ECCSC
T ss_pred EecCC
Confidence 99874
No 43
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.84 E-value=9.2e-21 Score=144.31 Aligned_cols=88 Identities=32% Similarity=0.590 Sum_probs=82.8
Q ss_pred CCCCcceEEEcCCCCCCCHHHHHHHHhccCCeEEEEEeecCCCCCcceEEEEEeCChHHHHHHHHhcCCeeeCCeEEEEe
Q 021295 52 KDFKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVK 131 (314)
Q Consensus 52 ~~~~~~~l~V~nLp~~~~e~~l~~~F~~~G~v~~v~i~~~~~~g~~rG~afV~F~~~~~a~~a~~~l~~~~~~gr~l~V~ 131 (314)
...+.++|||.|||++++|++|+++|++||+|++|+|++++.++++++||||+|+++++|++||+.||+..|.+++|+|+
T Consensus 8 ~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 87 (102)
T 1x5s_A 8 MASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVD 87 (102)
T ss_dssp CCCCCSEEEEESCCTTCCHHHHHHHHHHHSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCTTSCCCEEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 44567999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCCCCCC
Q 021295 132 KAEPKKPN 139 (314)
Q Consensus 132 ~a~~~~~~ 139 (314)
++.++...
T Consensus 88 ~a~~~~~~ 95 (102)
T 1x5s_A 88 QAGKSSDN 95 (102)
T ss_dssp EEECCCCC
T ss_pred ECCCCCCC
Confidence 99887654
No 44
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.84 E-value=2.1e-20 Score=143.15 Aligned_cols=89 Identities=33% Similarity=0.633 Sum_probs=83.1
Q ss_pred CCCCCCcceEEEcCCCCCCCHHHHHHHHhccCCeEEEEEeecCCCCCcceEEEEEeCChHHHHHHHHhcCCeeeCCeEEE
Q 021295 50 GSKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVE 129 (314)
Q Consensus 50 ~~~~~~~~~l~V~nLp~~~~e~~l~~~F~~~G~v~~v~i~~~~~~g~~rG~afV~F~~~~~a~~a~~~l~~~~~~gr~l~ 129 (314)
...+.+.++|||.|||+++++++|+++|++||+|++|.|++++.++++++||||+|+++++|++||+. +.+.|.+++|+
T Consensus 10 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~l~ 88 (105)
T 2dh8_A 10 NSGADEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS-RPHTLDGRNID 88 (105)
T ss_dssp CCCSSSSSEECCBSCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHH-CSEEETTEEEB
T ss_pred cCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHh-CCCeECCEEEE
Confidence 34566789999999999999999999999999999999999999999999999999999999999999 99999999999
Q ss_pred EeecCCCCCC
Q 021295 130 VKKAEPKKPN 139 (314)
Q Consensus 130 V~~a~~~~~~ 139 (314)
|+++.++...
T Consensus 89 V~~a~~~~~~ 98 (105)
T 2dh8_A 89 PKPCTPRGMQ 98 (105)
T ss_dssp CCCSCCSSCC
T ss_pred EEEccCCCCC
Confidence 9999877654
No 45
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.84 E-value=1.6e-20 Score=141.95 Aligned_cols=87 Identities=20% Similarity=0.374 Sum_probs=80.6
Q ss_pred CCcceEEEcCCCCCCCHHHHHHHHhccCCeEEEEEeecCC---CCCcceEEEEEeCChHHHHHHHHhcCCeeeCCeEEEE
Q 021295 54 FKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHS---TSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEV 130 (314)
Q Consensus 54 ~~~~~l~V~nLp~~~~e~~l~~~F~~~G~v~~v~i~~~~~---~g~~rG~afV~F~~~~~a~~a~~~l~~~~~~gr~l~V 130 (314)
.+.++|||.|||++++|++|+++|++||+|+.|.|+.++. |+++++||||+|+++++|++||+.||+..|.+++|+|
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 82 (98)
T 2cpf_A 3 SGSSGLFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVDGHKLEV 82 (98)
T ss_dssp CCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEETTEECEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCeeCCeEEEE
Confidence 4578999999999999999999999999999999999876 6689999999999999999999999999999999999
Q ss_pred eecCCCCCCC
Q 021295 131 KKAEPKKPNL 140 (314)
Q Consensus 131 ~~a~~~~~~~ 140 (314)
+++.++....
T Consensus 83 ~~a~~~~~~~ 92 (98)
T 2cpf_A 83 RISERATKPA 92 (98)
T ss_dssp ECSSCSSCCC
T ss_pred EEccCCCCCC
Confidence 9998876543
No 46
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.84 E-value=4.1e-20 Score=148.72 Aligned_cols=91 Identities=22% Similarity=0.472 Sum_probs=84.2
Q ss_pred CCCCCCCcceEEEcCCCCCCCHHHHHHHHhccCCeEEEEEeecCCCCCcceEEEEEeCChHHHHHHHHhcCCeeeCCeEE
Q 021295 49 VGSKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQV 128 (314)
Q Consensus 49 ~~~~~~~~~~l~V~nLp~~~~e~~l~~~F~~~G~v~~v~i~~~~~~g~~rG~afV~F~~~~~a~~a~~~l~~~~~~gr~l 128 (314)
...++...++|||+|||++++|++|+++|++||+|++|+|++++.++++++||||+|+++++|++||+.||+..|.+++|
T Consensus 35 ~~~~~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l 114 (139)
T 1u6f_A 35 MNPEPDVLRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNILNKRL 114 (139)
T ss_dssp SSCCTTTTSEEEEESCSTTCCHHHHHHHHHHHSCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEECSSCEE
T ss_pred cCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEE
Confidence 33456678999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeecCCCCCC
Q 021295 129 EVKKAEPKKPN 139 (314)
Q Consensus 129 ~V~~a~~~~~~ 139 (314)
+|++++++...
T Consensus 115 ~v~~a~~~~~~ 125 (139)
T 1u6f_A 115 KVALAASGHQR 125 (139)
T ss_dssp EEEESSCCCCC
T ss_pred EEEECCCCCCC
Confidence 99999876543
No 47
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.84 E-value=4.2e-21 Score=144.51 Aligned_cols=84 Identities=19% Similarity=0.381 Sum_probs=77.3
Q ss_pred CCCCcceEEEcCCCCCCCHHHHHHHHhccCC--eEEEEEeecCCCCCcceEEEEEeCChHHHHHHHHhcCCe----eeCC
Q 021295 52 KDFKTKKIFVGGIPSSVNEDEFKDFFMQFGD--VQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKL----ELAG 125 (314)
Q Consensus 52 ~~~~~~~l~V~nLp~~~~e~~l~~~F~~~G~--v~~v~i~~~~~~g~~rG~afV~F~~~~~a~~a~~~l~~~----~~~g 125 (314)
.+....+|||+|||+++||++|+++|++||. |++|+|++|+.|+++||||||+|+++++|++||+.||+. .|++
T Consensus 5 ~~~~m~tlfV~nL~~~~tee~L~~~F~~~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~~~i~G 84 (95)
T 2lkz_A 5 HHHHMDTIILRNIAPHTVVDSIMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLHPPLKIDG 84 (95)
T ss_dssp SSCCCCEEEEESCCTTCCHHHHHHHSTTTCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSSSCEEETT
T ss_pred cCCccCEEEEeCCCCcCCHHHHHHHHHhhCCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcCCCCCceECC
Confidence 3456789999999999999999999999995 678999999999999999999999999999999999875 5999
Q ss_pred eEEEEeecCC
Q 021295 126 AQVEVKKAEP 135 (314)
Q Consensus 126 r~l~V~~a~~ 135 (314)
++|.|++|++
T Consensus 85 r~i~V~~Aks 94 (95)
T 2lkz_A 85 KTIGVDFAKS 94 (95)
T ss_dssp EEEEEEECCC
T ss_pred EEEEEEEccC
Confidence 9999999975
No 48
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.84 E-value=2.3e-20 Score=136.55 Aligned_cols=82 Identities=23% Similarity=0.494 Sum_probs=78.8
Q ss_pred cceEEEcCCCCCCCHHHHHHHHhccCCeEEEEEeecCCCCCcceEEEEEeCChHHHHHHHHhcCCeeeCCeEEEEeecCC
Q 021295 56 TKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVKKAEP 135 (314)
Q Consensus 56 ~~~l~V~nLp~~~~e~~l~~~F~~~G~v~~v~i~~~~~~g~~rG~afV~F~~~~~a~~a~~~l~~~~~~gr~l~V~~a~~ 135 (314)
+.+|||+|||+++++++|+++|++||+|++|.|++++.++++++||||+|+++++|++|++.||+..|.+++|+|+++.+
T Consensus 1 t~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~ 80 (83)
T 3md1_A 1 TFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAAK 80 (83)
T ss_dssp CEEEEEECCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred CeEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCeeCCcEEEEEecCc
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred CC
Q 021295 136 KK 137 (314)
Q Consensus 136 ~~ 137 (314)
++
T Consensus 81 ~~ 82 (83)
T 3md1_A 81 LE 82 (83)
T ss_dssp CC
T ss_pred CC
Confidence 64
No 49
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.84 E-value=2.2e-20 Score=142.56 Aligned_cols=89 Identities=19% Similarity=0.442 Sum_probs=82.5
Q ss_pred CCCCCcceEEEcCCCCCCCHHHHHHHHhccCCeEEEEEeecCCCCCcceEEEEEeCChHHHHHHHHhcCCeeeCCeEEEE
Q 021295 51 SKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEV 130 (314)
Q Consensus 51 ~~~~~~~~l~V~nLp~~~~e~~l~~~F~~~G~v~~v~i~~~~~~g~~rG~afV~F~~~~~a~~a~~~l~~~~~~gr~l~V 130 (314)
..+.+.++|||.|||+++++++|+++|++||+|+.|+|+.+ ++++++||||+|+++++|++||+.||+..|.+++|+|
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~--~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V 87 (103)
T 2d9p_A 10 ITRYQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYV 87 (103)
T ss_dssp CCCSSCCCEEEECCCTTCCHHHHHHTTTTTSCEEEEEEEEC--SSSEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEE
T ss_pred cCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC--CCCcCEEEEEEECCHHHHHHHHHHhCCCEeCCcEEEE
Confidence 45567899999999999999999999999999999999998 8889999999999999999999999999999999999
Q ss_pred eecCCCCCCCC
Q 021295 131 KKAEPKKPNLP 141 (314)
Q Consensus 131 ~~a~~~~~~~~ 141 (314)
+++.++....+
T Consensus 88 ~~a~~~~~~~~ 98 (103)
T 2d9p_A 88 ALAQRKEERQS 98 (103)
T ss_dssp EECSSCCCCCC
T ss_pred EEecccccCCC
Confidence 99998765543
No 50
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.84 E-value=1.8e-20 Score=138.35 Aligned_cols=83 Identities=22% Similarity=0.455 Sum_probs=77.3
Q ss_pred CCcceEEEcCCCCCCCHHHHHHHHhccCCeEEEEEeecCCCCCcceEEEEEeCChHHHHHHHHhcCCeeeCCeEEEEeec
Q 021295 54 FKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVKKA 133 (314)
Q Consensus 54 ~~~~~l~V~nLp~~~~e~~l~~~F~~~G~v~~v~i~~~~~~g~~rG~afV~F~~~~~a~~a~~~l~~~~~~gr~l~V~~a 133 (314)
.+.++|||+|||+++++++|+++|++||+|++|.|+.++.++++++||||+|+++++|++||+.||+..|.+++|+|+++
T Consensus 4 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 83 (87)
T 3bs9_A 4 GSHFHVFVGDLSPEITTAAIAAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWA 83 (87)
T ss_dssp --CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred CCceEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEec
Confidence 35689999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCC
Q 021295 134 EPK 136 (314)
Q Consensus 134 ~~~ 136 (314)
+++
T Consensus 84 ~~k 86 (87)
T 3bs9_A 84 TRK 86 (87)
T ss_dssp C--
T ss_pred CCC
Confidence 875
No 51
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.84 E-value=3.2e-20 Score=142.06 Aligned_cols=88 Identities=20% Similarity=0.374 Sum_probs=81.7
Q ss_pred CCCCcceEEEcCCCCCCCHHHHHHHHhccCCeEEEEEeecCCCCCcceEEEEEeCChHHHHHHHHhcCCeeeCC---eEE
Q 021295 52 KDFKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAG---AQV 128 (314)
Q Consensus 52 ~~~~~~~l~V~nLp~~~~e~~l~~~F~~~G~v~~v~i~~~~~~g~~rG~afV~F~~~~~a~~a~~~l~~~~~~g---r~l 128 (314)
...+.++|||.|||+++++++|+++|++||+|+.|+|+.++ ++++++||||+|+++++|++||+.||+..|.+ ++|
T Consensus 11 ~~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~gg~~~~l 89 (105)
T 2dnh_A 11 RGGRDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGP-DGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGASSSL 89 (105)
T ss_dssp SCCCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECS-SSCEEEEEEEEESSHHHHHHHHHHHSSCCCCTTCSSCC
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCcCcEEEEEeCCHHHHHHHHHHHcCCccCCCCCccE
Confidence 44568999999999999999999999999999999999997 78999999999999999999999999999998 999
Q ss_pred EEeecCCCCCCC
Q 021295 129 EVKKAEPKKPNL 140 (314)
Q Consensus 129 ~V~~a~~~~~~~ 140 (314)
+|++|.++....
T Consensus 90 ~V~~a~~~~~~~ 101 (105)
T 2dnh_A 90 VVKFADTDKESG 101 (105)
T ss_dssp EEEESCSSCCCS
T ss_pred EEEECccCcccC
Confidence 999999876543
No 52
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.83 E-value=1.8e-20 Score=141.01 Aligned_cols=86 Identities=29% Similarity=0.455 Sum_probs=81.2
Q ss_pred CCcceEEEcCCCCCCCHHHHHHHHhccCCeEEE-EEeecCCCCCcceEEEEEeCChHHHHHHHHhcCCeeeCCeEEEEee
Q 021295 54 FKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEH-QIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVKK 132 (314)
Q Consensus 54 ~~~~~l~V~nLp~~~~e~~l~~~F~~~G~v~~v-~i~~~~~~g~~rG~afV~F~~~~~a~~a~~~l~~~~~~gr~l~V~~ 132 (314)
.+.++|||.|||+++++++|+++|++||+|++| +|++++.++++++||||+|+++++|++||+.||+..|.+++|+|++
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 82 (96)
T 1x5t_A 3 SGSSGIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSY 82 (96)
T ss_dssp SCCCEEEEECCCTTCCHHHHHHHHHTTSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEETTEECEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 357899999999999999999999999999999 9999999999999999999999999999999999999999999999
Q ss_pred cCCCCCC
Q 021295 133 AEPKKPN 139 (314)
Q Consensus 133 a~~~~~~ 139 (314)
+.++...
T Consensus 83 a~~~~~~ 89 (96)
T 1x5t_A 83 AFKKDSK 89 (96)
T ss_dssp SCCCCCC
T ss_pred ecccCCC
Confidence 9876543
No 53
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.83 E-value=1.6e-20 Score=143.92 Aligned_cols=89 Identities=24% Similarity=0.472 Sum_probs=82.7
Q ss_pred CCCCCcceEEEcCCCCCCCHHHHHHHHhccCCeEEEEEeecCCCCCcceEEEEEeCChHHHHHHHHhcCCeee---CCeE
Q 021295 51 SKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLEL---AGAQ 127 (314)
Q Consensus 51 ~~~~~~~~l~V~nLp~~~~e~~l~~~F~~~G~v~~v~i~~~~~~g~~rG~afV~F~~~~~a~~a~~~l~~~~~---~gr~ 127 (314)
..+.+.++|||.|||++++|++|+++|++||+|++|+|+.++.++++++||||+|+++++|++||+.||+..+ .+++
T Consensus 8 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~ 87 (106)
T 2dgp_A 8 MKDHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNRP 87 (106)
T ss_dssp CCCTTCEEEEEESCCTTCCHHHHHHHHHHHSCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTTCCCTTCSSC
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhcCCcccCCCCce
Confidence 3556789999999999999999999999999999999999999999999999999999999999999999887 8899
Q ss_pred EEEeecCCCCCC
Q 021295 128 VEVKKAEPKKPN 139 (314)
Q Consensus 128 l~V~~a~~~~~~ 139 (314)
|+|+++.++...
T Consensus 88 l~v~~a~~~~~~ 99 (106)
T 2dgp_A 88 IQVKPADSESRG 99 (106)
T ss_dssp CEEEECCCCSCC
T ss_pred EEEEECCccccc
Confidence 999999887544
No 54
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.83 E-value=3.2e-21 Score=143.67 Aligned_cols=84 Identities=17% Similarity=0.358 Sum_probs=73.0
Q ss_pred ceEEEcCCCCCCCHHHHHHHHhccC--CeEEEEEeecCCCCCcceEEEEEeCChHHHHHHHHhcCCeeeCCeEEEEeecC
Q 021295 57 KKIFVGGIPSSVNEDEFKDFFMQFG--DVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVKKAE 134 (314)
Q Consensus 57 ~~l~V~nLp~~~~e~~l~~~F~~~G--~v~~v~i~~~~~~g~~rG~afV~F~~~~~a~~a~~~l~~~~~~gr~l~V~~a~ 134 (314)
.+|||+|||++++|++|+++|++|| +|++|+|+.|+.+++++|||||+|++.++|++||+.||+..|.+++|+|+++.
T Consensus 2 ~~l~V~nL~~~~t~~~l~~~F~~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~gr~i~V~~~~ 81 (90)
T 3p5t_L 2 IALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPSN 81 (90)
T ss_dssp --CEEESCCTTCCHHHHHHHHHTTTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCSSSCCCEECCC-
T ss_pred eEEEEeCCCCCCCHHHHHHHHHHhCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCeeCCEEEEEEECC
Confidence 4799999999999999999999999 99999999999999999999999999999999999999999999999999998
Q ss_pred CCCCCC
Q 021295 135 PKKPNL 140 (314)
Q Consensus 135 ~~~~~~ 140 (314)
+..+..
T Consensus 82 ~~~~~~ 87 (90)
T 3p5t_L 82 KLEHHH 87 (90)
T ss_dssp ------
T ss_pred CCcccc
Confidence 875543
No 55
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.83 E-value=3.7e-20 Score=138.77 Aligned_cols=84 Identities=23% Similarity=0.410 Sum_probs=79.6
Q ss_pred CCCCCcceEEEcCCCCCCCHHHHHHHHhccCCeEEEEEeecCCCCCcceEEEEEeCChHHHHHHHHhcCCeeeCCeEEEE
Q 021295 51 SKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEV 130 (314)
Q Consensus 51 ~~~~~~~~l~V~nLp~~~~e~~l~~~F~~~G~v~~v~i~~~~~~g~~rG~afV~F~~~~~a~~a~~~l~~~~~~gr~l~V 130 (314)
....+.++|||.|||+++++++|+++|++||+|++|.|++++.++++++||||+|+++++|++||+.||+..|.+++|+|
T Consensus 11 ~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v 90 (94)
T 2e5h_A 11 GLAPSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQLFGRVIKA 90 (94)
T ss_dssp SCCCCTTSEEEESCCTTSCHHHHHHHTTTTSCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTEEETTEEEEE
T ss_pred CCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCCCeeCCcEEEE
Confidence 34567789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eecC
Q 021295 131 KKAE 134 (314)
Q Consensus 131 ~~a~ 134 (314)
++|+
T Consensus 91 ~~ak 94 (94)
T 2e5h_A 91 SIAI 94 (94)
T ss_dssp EECC
T ss_pred EecC
Confidence 9874
No 56
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.83 E-value=5.8e-20 Score=140.21 Aligned_cols=86 Identities=20% Similarity=0.417 Sum_probs=80.2
Q ss_pred CCCCcceEEEcCCCCCCCHHHHHHHHhccCCeEEEEEeecCCCCCcceEEEEEeCChHHHHHHHHhcCCeeeCCeEEEEe
Q 021295 52 KDFKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVK 131 (314)
Q Consensus 52 ~~~~~~~l~V~nLp~~~~e~~l~~~F~~~G~v~~v~i~~~~~~g~~rG~afV~F~~~~~a~~a~~~l~~~~~~gr~l~V~ 131 (314)
...+.++|||.|||++++|++|+++|++|+ |++|+|++++.++++++||||+|+++++|++|| .||+..|.+++|+|+
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g-i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~ 88 (103)
T 2dng_A 11 PTEPPYTAYVGNLPFNTVQGDIDAIFKDLS-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEAL-TYDGALLGDRSLRVD 88 (103)
T ss_dssp CSSSCEEEEEESCCTTCCHHHHHHHTTTSC-EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHG-GGTTCEETTEECEEE
T ss_pred CCCCCeEEEEeCCCCCCCHHHHHHHHHhCC-ceEEEEeecCCCCccceEEEEEECCHHHHHHHH-hhCCCeECCeEEEEE
Confidence 455678999999999999999999999996 999999999999999999999999999999999 899999999999999
Q ss_pred ecCCCCCC
Q 021295 132 KAEPKKPN 139 (314)
Q Consensus 132 ~a~~~~~~ 139 (314)
++.++...
T Consensus 89 ~a~~~~~~ 96 (103)
T 2dng_A 89 IAEGRKQD 96 (103)
T ss_dssp ECCCCCCC
T ss_pred EecCCCCC
Confidence 99876544
No 57
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.83 E-value=3.1e-20 Score=144.08 Aligned_cols=89 Identities=25% Similarity=0.413 Sum_probs=83.2
Q ss_pred CCCCCcceEEEcCCCCCCCHHHHHHHHhccCCeE--------EEEEeecCCCCCcceEEEEEeCChHHHHHHHHhcCCee
Q 021295 51 SKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQ--------EHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLE 122 (314)
Q Consensus 51 ~~~~~~~~l~V~nLp~~~~e~~l~~~F~~~G~v~--------~v~i~~~~~~g~~rG~afV~F~~~~~a~~a~~~l~~~~ 122 (314)
.++.+.++|||.|||+++++++|+++|++||+|+ .|+|+.++.++++++||||+|+++++|++||+.||+..
T Consensus 10 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~ 89 (113)
T 2cpe_A 10 DEDSDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGKD 89 (113)
T ss_dssp CCCCCCCEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTTCE
T ss_pred ccCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcCCCc
Confidence 3556789999999999999999999999999999 69999999999999999999999999999999999999
Q ss_pred eCCeEEEEeecCCCCCC
Q 021295 123 LAGAQVEVKKAEPKKPN 139 (314)
Q Consensus 123 ~~gr~l~V~~a~~~~~~ 139 (314)
|.+++|+|+++.++...
T Consensus 90 ~~g~~l~V~~a~~~~~~ 106 (113)
T 2cpe_A 90 FQGSKLKVSLARKKPPM 106 (113)
T ss_dssp ETTEECEEECSSCCCCS
T ss_pred cCCCEEEEEECCCCCCC
Confidence 99999999999987654
No 58
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.83 E-value=1.2e-19 Score=140.87 Aligned_cols=87 Identities=24% Similarity=0.319 Sum_probs=80.2
Q ss_pred CCCCcceEEEcCCCCCCCHHHHHHHHhccCCeEEEEEeecCCCCCcceEEEEEeCChHHHHHHHHhcCCeeeCCeEEEEe
Q 021295 52 KDFKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVK 131 (314)
Q Consensus 52 ~~~~~~~l~V~nLp~~~~e~~l~~~F~~~G~v~~v~i~~~~~~g~~rG~afV~F~~~~~a~~a~~~l~~~~~~gr~l~V~ 131 (314)
...+.++|||.|||+++++++|+++|++||+|++|+|+.++ ++++++||||+|+++++|++||+.||+..|.+++|+|+
T Consensus 11 ~~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 89 (114)
T 2do0_A 11 AGRLGSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDK-DGKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRPMHVK 89 (114)
T ss_dssp CCCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECT-TCSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCeeeEEEEEECCHHHHHHHHHHhCCCEeCCCEEEEE
Confidence 44567899999999999999999999999999999999997 58999999999999999999999999999999999999
Q ss_pred ecCCCCCC
Q 021295 132 KAEPKKPN 139 (314)
Q Consensus 132 ~a~~~~~~ 139 (314)
++....+.
T Consensus 90 ~a~~~~~~ 97 (114)
T 2do0_A 90 MDERALPK 97 (114)
T ss_dssp ECSCCCCC
T ss_pred EcccCCCC
Confidence 98865443
No 59
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.83 E-value=2.2e-20 Score=143.17 Aligned_cols=87 Identities=18% Similarity=0.408 Sum_probs=82.0
Q ss_pred CCCCcceEEEcCCCCCCCHHHHHHHHhccCCeEEEEEeecCCCCCcceEEEEEeCChHHHHHHHHhcCCeeeCCeEEEEe
Q 021295 52 KDFKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVK 131 (314)
Q Consensus 52 ~~~~~~~l~V~nLp~~~~e~~l~~~F~~~G~v~~v~i~~~~~~g~~rG~afV~F~~~~~a~~a~~~l~~~~~~gr~l~V~ 131 (314)
...+.++|||.|||+++++++|+++|++||+|++|.|+.++.++++++||||+|+++++|++||+.||+..|.+++|+|+
T Consensus 19 ~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 98 (106)
T 1p27_B 19 RSVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVD 98 (106)
T ss_dssp CBTTBEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBSSSSBCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCEECCcEEEEE
Confidence 45567899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCCCCC
Q 021295 132 KAEPKKP 138 (314)
Q Consensus 132 ~a~~~~~ 138 (314)
+|.++.+
T Consensus 99 ~a~~~~~ 105 (106)
T 1p27_B 99 WCFVRGP 105 (106)
T ss_dssp ESEESSC
T ss_pred eecCCCC
Confidence 9987643
No 60
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.83 E-value=2.5e-20 Score=137.00 Aligned_cols=82 Identities=28% Similarity=0.549 Sum_probs=78.4
Q ss_pred CCCcceEEEcCCCCCCCHHHHHHHHhccCCeEEEEEeecCCCCCcceEEEEEeCChHHHHHHHHhcCCeeeCCeEEEEee
Q 021295 53 DFKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVKK 132 (314)
Q Consensus 53 ~~~~~~l~V~nLp~~~~e~~l~~~F~~~G~v~~v~i~~~~~~g~~rG~afV~F~~~~~a~~a~~~l~~~~~~gr~l~V~~ 132 (314)
..+.++|||.|||+++++++|+++|++||+|++|.|++++.++++++||||+|+++++|++|++.||+..|.+++|+|++
T Consensus 4 ~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 83 (85)
T 3mdf_A 4 ATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNL 83 (85)
T ss_dssp CCCSSEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHhccCCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 45678999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred cC
Q 021295 133 AE 134 (314)
Q Consensus 133 a~ 134 (314)
|+
T Consensus 84 ak 85 (85)
T 3mdf_A 84 AK 85 (85)
T ss_dssp CC
T ss_pred cC
Confidence 74
No 61
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.83 E-value=1.1e-20 Score=179.77 Aligned_cols=87 Identities=16% Similarity=0.381 Sum_probs=82.2
Q ss_pred CCCCcceEEEcCCCCCCCHHHHHHHHhccCCeEEEEEeecCCCCCcceEEEEEeCChHHHHHHHHhcCCeeeCCeEEEEe
Q 021295 52 KDFKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVK 131 (314)
Q Consensus 52 ~~~~~~~l~V~nLp~~~~e~~l~~~F~~~G~v~~v~i~~~~~~g~~rG~afV~F~~~~~a~~a~~~l~~~~~~gr~l~V~ 131 (314)
...+.++|||.|||++||+++|+++|++||+|+.|.|+.++.++++++||||+|+++++|++||+.||+++|.+++|+|.
T Consensus 98 ~~~~~~~lfV~nL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~i~gr~i~V~ 177 (437)
T 3pgw_S 98 QGDAFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVD 177 (437)
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEeeccCCCCCccceEEEeeccHHHHHHHHHHcCCCEECCEEEEEE
Confidence 44567899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCCCCC
Q 021295 132 KAEPKKP 138 (314)
Q Consensus 132 ~a~~~~~ 138 (314)
+|.++..
T Consensus 178 ~a~~~~~ 184 (437)
T 3pgw_S 178 VERGRTV 184 (437)
T ss_pred EeCCCCC
Confidence 9987654
No 62
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.83 E-value=9.8e-20 Score=138.87 Aligned_cols=89 Identities=25% Similarity=0.470 Sum_probs=81.1
Q ss_pred CCCCCcceEEEcCCCCCCCHHHHHHHHhccCCeEEEEEeecCCCCCcceEEEEEeCChHHHHHHHHhcCCeeeCCeEEEE
Q 021295 51 SKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEV 130 (314)
Q Consensus 51 ~~~~~~~~l~V~nLp~~~~e~~l~~~F~~~G~v~~v~i~~~~~~g~~rG~afV~F~~~~~a~~a~~~l~~~~~~gr~l~V 130 (314)
....+.++|||.|||+++++++|+++|++||+|++|+|+.++.+ +++||||+|+++++|++||+.||+..|.+++|+|
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~--~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 87 (103)
T 2cq3_A 10 ESKSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERG--SKGFGFVTFENSADADRAREKLHGTVVEGRKIEV 87 (103)
T ss_dssp CCSCCCCEEEEESCCTTCCHHHHHHHGGGTSCEEEEEEECCTTT--TCCEEEEEESCHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCC--CcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEE
Confidence 35567899999999999999999999999999999999988643 8999999999999999999999999999999999
Q ss_pred eecCCCCCCCC
Q 021295 131 KKAEPKKPNLP 141 (314)
Q Consensus 131 ~~a~~~~~~~~ 141 (314)
+++.++....+
T Consensus 88 ~~a~~~~~~~~ 98 (103)
T 2cq3_A 88 NNATARVMTNS 98 (103)
T ss_dssp EECCSSCCCCC
T ss_pred EEcccCCCCCC
Confidence 99998765543
No 63
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=1.4e-19 Score=137.93 Aligned_cols=87 Identities=21% Similarity=0.391 Sum_probs=79.5
Q ss_pred CCCCCcceEEEcCCCCCCCHHHHHHHHhccCCeEEEEEeecCCCCCcceEEEEEeCChHHHHHHHHhcCCeeeCCeEEEE
Q 021295 51 SKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEV 130 (314)
Q Consensus 51 ~~~~~~~~l~V~nLp~~~~e~~l~~~F~~~G~v~~v~i~~~~~~g~~rG~afV~F~~~~~a~~a~~~l~~~~~~gr~l~V 130 (314)
..+.+.++|||.|||+++++++|+++|++||+|+.|+|++++.+ +++||||+|+++++|++||+.||+..|.+++|+|
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~--~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 87 (103)
T 2cqi_A 10 EDDGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTS--NDPYCFVEFYEHRDAAAALAAMNGRKILGKEVKV 87 (103)
T ss_dssp CCSCCCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEEEECCCCS--SCCEEEEEESSHHHHHHHHHHHTTEEETTEEEEE
T ss_pred CCCCCCCEEEEeCCCccCCHHHHHHHHHhcCCEeEEEEEecCCC--CCCEEEEEECCHHHHHHHHHHhCCCCcCCCeEEE
Confidence 34567899999999999999999999999999999999998654 6899999999999999999999999999999999
Q ss_pred eecCCCCCC
Q 021295 131 KKAEPKKPN 139 (314)
Q Consensus 131 ~~a~~~~~~ 139 (314)
+++.++...
T Consensus 88 ~~a~~~~~~ 96 (103)
T 2cqi_A 88 NWATTPSSQ 96 (103)
T ss_dssp EECCCTTCC
T ss_pred EECCCCccc
Confidence 999986543
No 64
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=6e-20 Score=140.36 Aligned_cols=86 Identities=23% Similarity=0.457 Sum_probs=80.2
Q ss_pred CCCCcceEEEcCCCCCCCHHHHHHHHhccCCeEEEEEeecCCC-CCcceEEEEEeCChHHHHHHHHhcCCeeeCCeEEEE
Q 021295 52 KDFKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHST-SRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEV 130 (314)
Q Consensus 52 ~~~~~~~l~V~nLp~~~~e~~l~~~F~~~G~v~~v~i~~~~~~-g~~rG~afV~F~~~~~a~~a~~~l~~~~~~gr~l~V 130 (314)
...+.++|||.|||++++|++|+++|++|| |++|+|++++.+ +++++||||+|+++++|++|| .||+..|.+++|+|
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V 88 (104)
T 1wi8_A 11 PKSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNKRIRV 88 (104)
T ss_dssp CSSSCEEEEEESCCSSCCHHHHHHHTTTSC-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHH-GGGTCEETTEECEE
T ss_pred CCCCCCEEEEeCCCCcCCHHHHHHHHHHCC-ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHH-hcCCCEeCCcEEEE
Confidence 445679999999999999999999999999 999999999887 899999999999999999999 99999999999999
Q ss_pred eecCCCCCC
Q 021295 131 KKAEPKKPN 139 (314)
Q Consensus 131 ~~a~~~~~~ 139 (314)
+++.++...
T Consensus 89 ~~a~~~~~~ 97 (104)
T 1wi8_A 89 DVADQAQDK 97 (104)
T ss_dssp EECCCCCCC
T ss_pred EEccCCCCC
Confidence 999886543
No 65
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.82 E-value=4.2e-20 Score=139.83 Aligned_cols=86 Identities=20% Similarity=0.322 Sum_probs=81.0
Q ss_pred CCCCcceEEEcCCCCCCCHHHHHHHHhccCCeE-EEEEeecCCCCCcceEEEEEeCChHHHHHHHHhcCCeeeCCeE---
Q 021295 52 KDFKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQ-EHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQ--- 127 (314)
Q Consensus 52 ~~~~~~~l~V~nLp~~~~e~~l~~~F~~~G~v~-~v~i~~~~~~g~~rG~afV~F~~~~~a~~a~~~l~~~~~~gr~--- 127 (314)
...++++|||+|||++++|++|+++|++||+|+ +|+|++++.++++++||||+|+++++|++||+.||+..|.++.
T Consensus 5 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~ 84 (99)
T 2div_A 5 SSGMAASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAK 84 (99)
T ss_dssp CCSSSSEEEECSCCTTCCHHHHHHHHHHTTCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTSEESSCSSCE
T ss_pred CCCCccEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCccCCCCcce
Confidence 345689999999999999999999999999999 9999999999999999999999999999999999999999999
Q ss_pred -EEEeecCCCC
Q 021295 128 -VEVKKAEPKK 137 (314)
Q Consensus 128 -l~V~~a~~~~ 137 (314)
|+|++|.+..
T Consensus 85 ~l~v~~a~~~~ 95 (99)
T 2div_A 85 RFKLNYATYSG 95 (99)
T ss_dssp ECCEEETTCCS
T ss_pred eEEEeecCCCC
Confidence 9999988754
No 66
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.82 E-value=2.3e-20 Score=147.63 Aligned_cols=89 Identities=18% Similarity=0.396 Sum_probs=83.0
Q ss_pred CCCCCcceEEEcCCCCCCCHHHHHHHHhccCCeEEEEEeecCCCCCcceEEEEEeCChHHHHHHHHhcCCeeeCCeEEEE
Q 021295 51 SKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEV 130 (314)
Q Consensus 51 ~~~~~~~~l~V~nLp~~~~e~~l~~~F~~~G~v~~v~i~~~~~~g~~rG~afV~F~~~~~a~~a~~~l~~~~~~gr~l~V 130 (314)
....+.++|||.|||+++++++|+++|++||+|+.|.|+.++.++++++||||+|+++++|++||+.||+..|.+++|+|
T Consensus 17 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 96 (126)
T 3ex7_B 17 QRSVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISV 96 (126)
T ss_dssp CCCSSSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBSSSSBCEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCeEEEE
Confidence 34556789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eecCCCCCC
Q 021295 131 KKAEPKKPN 139 (314)
Q Consensus 131 ~~a~~~~~~ 139 (314)
++|.++...
T Consensus 97 ~~a~~~~~~ 105 (126)
T 3ex7_B 97 DWCFVRGPP 105 (126)
T ss_dssp EESEESSSC
T ss_pred EEecCCCCC
Confidence 999876543
No 67
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.82 E-value=7.4e-20 Score=142.88 Aligned_cols=85 Identities=31% Similarity=0.516 Sum_probs=80.1
Q ss_pred CCCcceEEEcCCCCCCCHHHHHHHHhccCCeEEEEEeecCCCCCcceEEEEEeCChHHHHHHHHhcCCeeeCCeEEEEee
Q 021295 53 DFKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVKK 132 (314)
Q Consensus 53 ~~~~~~l~V~nLp~~~~e~~l~~~F~~~G~v~~v~i~~~~~~g~~rG~afV~F~~~~~a~~a~~~l~~~~~~gr~l~V~~ 132 (314)
..+.++|||+|||+++++++|+++|++||+|++|.|+.++ ++++++||||+|++.++|++||+.||+..|.+++|+|++
T Consensus 4 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 82 (116)
T 2fy1_A 4 ADHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDR-TSKSRGFAFITFENPADAKNAAKDMNGKSLHGKAIKVEQ 82 (116)
T ss_dssp TCSCCEEEEECCTTTCCHHHHHHHHHTSSCCSEEEEECST-TTTCCCEEEEECSSHHHHHHHHHHCSSCBCSSSBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 3567899999999999999999999999999999999997 899999999999999999999999999999999999999
Q ss_pred cCCCCC
Q 021295 133 AEPKKP 138 (314)
Q Consensus 133 a~~~~~ 138 (314)
++++..
T Consensus 83 a~~~~~ 88 (116)
T 2fy1_A 83 AKKPSF 88 (116)
T ss_dssp CCCSSC
T ss_pred CCCCCC
Confidence 987654
No 68
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.82 E-value=5.3e-20 Score=138.59 Aligned_cols=85 Identities=21% Similarity=0.388 Sum_probs=80.9
Q ss_pred CcceEEEcCCCCCCCHHHHHHHHhccCCeEEEEEeecCCCCCcceEEEEEeCChHHHHHHHHhcCCeeeCCeEEEEeecC
Q 021295 55 KTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVKKAE 134 (314)
Q Consensus 55 ~~~~l~V~nLp~~~~e~~l~~~F~~~G~v~~v~i~~~~~~g~~rG~afV~F~~~~~a~~a~~~l~~~~~~gr~l~V~~a~ 134 (314)
++++|||+|||+++++++|+++|++||+|++|+|+.++.++++++||||+|++.++|++||+.||+..|.++.|+|+++.
T Consensus 1 P~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 80 (96)
T 2x1f_A 1 PSRVVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQLGSRFLKCGYSS 80 (96)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECS
T ss_pred CCcEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEcC
Confidence 36899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCC
Q 021295 135 PKKPN 139 (314)
Q Consensus 135 ~~~~~ 139 (314)
++...
T Consensus 81 ~~~~~ 85 (96)
T 2x1f_A 81 NSDIS 85 (96)
T ss_dssp CSSGG
T ss_pred CCCCC
Confidence 87654
No 69
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.82 E-value=3.6e-21 Score=154.84 Aligned_cols=124 Identities=12% Similarity=0.124 Sum_probs=74.3
Q ss_pred ccEEEEEECCHHHHHHHHHccCccCCcEEEEeecCCCCCCCCCCCCcceEEEcCCCCCCCHHHHHHHHhccCCeEEEEEe
Q 021295 10 RGFGFVTYADPSVVDKVIEDTHIINGKQVEIKRTIPKGAVGSKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIM 89 (314)
Q Consensus 10 kG~aFV~f~~~~~a~~A~~~~~~i~g~~i~v~~~~~~~~~~~~~~~~~~l~V~nLp~~~~e~~l~~~F~~~G~v~~v~i~ 89 (314)
+++||.+|..++.+..++..+..+.+..-.-... ............++|||.|||+++||+||+++|++|+ |++|+|+
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~gg~~~g~~~-g~~~~~~~~~~~~~lfV~nLp~~~te~dL~~~F~~~G-i~~v~i~ 78 (139)
T 2hgn_A 1 MGSSHHHHHHSSGLVPRGSHMASMTGGQQMGRGS-GDSEFTVQSTTGHCVHMRGLPYKATENDIYNFFSPLN-PVRVHIE 78 (139)
T ss_dssp ---------------------------------------------CCCCEECCSCCTTCCHHHHHHHHCSCC-CSEEECC
T ss_pred CCcccccccCccccchhcccchhccCCCCCCCCC-CCcccCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEE
Confidence 4789999999998888877554333222111110 1111122445678999999999999999999999999 7799999
Q ss_pred ecCCCCCcceEEEEEeCChHHHHHHHHhcCCeeeCCeEEEEeecCCCC
Q 021295 90 RDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVKKAEPKK 137 (314)
Q Consensus 90 ~~~~~g~~rG~afV~F~~~~~a~~a~~~l~~~~~~gr~l~V~~a~~~~ 137 (314)
+|+. ++++|||||+|+++++|++|| ++|...|.++.|+|..+.+..
T Consensus 79 ~d~~-g~srGfaFV~F~~~e~A~~Al-~~~g~~l~gR~i~V~~a~~~~ 124 (139)
T 2hgn_A 79 IGPD-GRVTGEADVEFATHEEAVAAM-SKDRANMQHRYIELFLNSTTG 124 (139)
T ss_dssp CSSS-SCSSCCCEEECSHHHHHHHHT-TCCSCSSSSCCCCCEECCCSC
T ss_pred ECCC-CCCceEEEEEeCCHHHHHHHH-hhCCCEECCEEEEEEECCCCC
Confidence 9975 999999999999999999999 779999999999999887654
No 70
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.82 E-value=3.2e-20 Score=147.66 Aligned_cols=88 Identities=24% Similarity=0.463 Sum_probs=82.7
Q ss_pred CCCCCcceEEEcCCCCCCCHHHHHHHHhccCCeEEEEEeecCCCCCcceEEEEEeCChHHHHHHHHhcCCeeeCCeEEEE
Q 021295 51 SKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEV 130 (314)
Q Consensus 51 ~~~~~~~~l~V~nLp~~~~e~~l~~~F~~~G~v~~v~i~~~~~~g~~rG~afV~F~~~~~a~~a~~~l~~~~~~gr~l~V 130 (314)
....+.++|||.|||++++|++|+++|++||+|++|+|++++.++++++||||+|+++++|++||+.||+..|.+++|+|
T Consensus 41 ~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i~g~~l~V 120 (129)
T 2kxn_B 41 ANPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRV 120 (129)
T ss_dssp SCCCCSSCBCEETCTTSCCHHHHHHHHTTTSCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCSSSSCCEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCEEEEE
Confidence 34566789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eecCCCCC
Q 021295 131 KKAEPKKP 138 (314)
Q Consensus 131 ~~a~~~~~ 138 (314)
+++.++++
T Consensus 121 ~~a~~~~p 128 (129)
T 2kxn_B 121 DFSITKRP 128 (129)
T ss_dssp SCCSSSSC
T ss_pred EEecCCCC
Confidence 99988654
No 71
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=3.8e-20 Score=144.30 Aligned_cols=87 Identities=31% Similarity=0.648 Sum_probs=81.2
Q ss_pred CCCCcceEEEcCCCCCCCHHHHHHHHhccCCeEEEEEeecCCCCCcceEEEEEeCChHHHHHHHHhcCCeeeCCeEEEEe
Q 021295 52 KDFKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVK 131 (314)
Q Consensus 52 ~~~~~~~l~V~nLp~~~~e~~l~~~F~~~G~v~~v~i~~~~~~g~~rG~afV~F~~~~~a~~a~~~l~~~~~~gr~l~V~ 131 (314)
.+.+.++|||.|||+++++++|+++|++||+|+.|.|+.++.++++++||||+|+++++|++||+. +...|.+++|+|+
T Consensus 23 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g~~l~V~ 101 (116)
T 1x4b_A 23 EKEQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA-RPHSIDGRVVEPK 101 (116)
T ss_dssp HHHHHTEEEEECCTTCCCHHHHHHHHTSSCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTS-CSEEETTEEEEEE
T ss_pred ccCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHh-CCcEECCEEEEEE
Confidence 344568999999999999999999999999999999999999999999999999999999999999 9999999999999
Q ss_pred ecCCCCCC
Q 021295 132 KAEPKKPN 139 (314)
Q Consensus 132 ~a~~~~~~ 139 (314)
++.++...
T Consensus 102 ~a~~~~~~ 109 (116)
T 1x4b_A 102 RAVAREES 109 (116)
T ss_dssp CCSSCCCC
T ss_pred ECCCCccC
Confidence 99887543
No 72
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=2.4e-19 Score=136.74 Aligned_cols=87 Identities=26% Similarity=0.504 Sum_probs=80.4
Q ss_pred CCCCCcceEEEcCCCCCCCHHHHHHHHhccCCeEEEEEeecCCCCCcceEEEEEeCChHHHHHHHHhcCCeeeCCeEEEE
Q 021295 51 SKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEV 130 (314)
Q Consensus 51 ~~~~~~~~l~V~nLp~~~~e~~l~~~F~~~G~v~~v~i~~~~~~g~~rG~afV~F~~~~~a~~a~~~l~~~~~~gr~l~V 130 (314)
....+.++|||.|||+++++++|+++|++||+|+.|+|+.++.++++++||||+|+++++|++||+. ...|++++|+|
T Consensus 10 ~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~--~~~~~g~~l~v 87 (103)
T 2cqg_A 10 RAVQKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMSQ--RHMIDGRWCDC 87 (103)
T ss_dssp CCCCCCCCEEEESCCSSCCHHHHHHHHGGGSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHS--CEEETTEEEEE
T ss_pred CccCCCCEEEEEcCCCcCCHHHHHHHHHhcCCeEEEEEEecCCCCCccceEEEEECCHHHHHHHHHc--CCeeCCeEEEE
Confidence 3556778999999999999999999999999999999999999999999999999999999999995 67899999999
Q ss_pred eecCCCCCC
Q 021295 131 KKAEPKKPN 139 (314)
Q Consensus 131 ~~a~~~~~~ 139 (314)
+++.++...
T Consensus 88 ~~a~~~~~~ 96 (103)
T 2cqg_A 88 KLPNSKQSQ 96 (103)
T ss_dssp ECCCTTCCC
T ss_pred EecCCCCcC
Confidence 999987654
No 73
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.82 E-value=1.4e-20 Score=150.83 Aligned_cols=123 Identities=15% Similarity=0.151 Sum_probs=79.1
Q ss_pred ccEEEEEECCHHHHHHHHHccCccCCcEEEEeecCCCCCCCCCCCCcceEEEcCCCCCCCHHHHHHHHhccCC---eEEE
Q 021295 10 RGFGFVTYADPSVVDKVIEDTHIINGKQVEIKRTIPKGAVGSKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGD---VQEH 86 (314)
Q Consensus 10 kG~aFV~f~~~~~a~~A~~~~~~i~g~~i~v~~~~~~~~~~~~~~~~~~l~V~nLp~~~~e~~l~~~F~~~G~---v~~v 86 (314)
++++|.++..++++...+..+....+..-. . ........+..+.++|||+|||+++||++|+++|++|++ |++|
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~gg~~~-g--~g~~~~~~~~~~~~~lfVgnLp~~~te~dL~~~F~~~G~v~~v~~v 77 (136)
T 2hgl_A 1 MGSSHHHHHHSSGLVPRGSHMASMTGGQQM-G--RGSMMLGPEGGEGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGV 77 (136)
T ss_dssp -------------------------------------CCSCSSCCTTCEEEEESCCTTCCHHHHHHHTTTCCCSSSSTTE
T ss_pred CccccccccchHHHHhhccCCCcccCCCCC-C--CCCCCCCCCCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcCceeEE
Confidence 467888888888777666543323222110 0 011112234456789999999999999999999999999 8899
Q ss_pred EEeecCCCCCcceEEEEEeCChHHHHHHHHhcCCeeeCCeEEEEeecCCCC
Q 021295 87 QIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVKKAEPKK 137 (314)
Q Consensus 87 ~i~~~~~~g~~rG~afV~F~~~~~a~~a~~~l~~~~~~gr~l~V~~a~~~~ 137 (314)
+|++|+. ++++|||||+|+++++|++||+ ||...|.++.|+|.++.+++
T Consensus 78 ~i~~d~~-g~srG~aFV~F~~~e~a~~Al~-~~g~~l~gr~i~V~~a~~~e 126 (136)
T 2hgl_A 78 HFIYTRE-GRQSGEAFVELGSEDDVKMALK-KDRESMGHRYIEVFKSHRTE 126 (136)
T ss_dssp EEEECSS-SCEEEEEEEECSSHHHHHHHHT-TTEEESSSSEEEEEECCHHH
T ss_pred EEEECCC-CCCCeEEEEEECCHHHHHHHHh-cCCCEECCEEEEEEECChHH
Confidence 9999987 9999999999999999999999 89999999999999987543
No 74
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.82 E-value=5.2e-20 Score=143.51 Aligned_cols=83 Identities=25% Similarity=0.520 Sum_probs=75.9
Q ss_pred CcceEEEcCCCCCCCHHHHHHHHhccCCeEEEEEeecCCCCCcceEEEEEeCChHHHHHHHHhcCCeeeCCeEEEEeecC
Q 021295 55 KTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVKKAE 134 (314)
Q Consensus 55 ~~~~l~V~nLp~~~~e~~l~~~F~~~G~v~~v~i~~~~~~g~~rG~afV~F~~~~~a~~a~~~l~~~~~~gr~l~V~~a~ 134 (314)
.+.+|||+|||++++|++|+++|++||+|++|+|++|+. .+|+||||+|+++++|++||+.||+..|.+++|+|+++.
T Consensus 4 ~~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~i~~d~~--~~kg~afV~f~~~~~A~~Ai~~l~~~~~~g~~i~V~~a~ 81 (115)
T 4f25_A 4 GSGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDEN--GSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFK 81 (115)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETT--EEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEESS
T ss_pred CCCEEEECCCCCCCCHHHHHHHHhccCCEEEEEEeecCC--CCCceEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECC
Confidence 356899999999999999999999999999999999853 479999999999999999999999999999999999998
Q ss_pred CCCCC
Q 021295 135 PKKPN 139 (314)
Q Consensus 135 ~~~~~ 139 (314)
+++..
T Consensus 82 ~~~~~ 86 (115)
T 4f25_A 82 SRKER 86 (115)
T ss_dssp CCCC-
T ss_pred Ccccc
Confidence 76543
No 75
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.82 E-value=6.6e-20 Score=138.86 Aligned_cols=85 Identities=21% Similarity=0.363 Sum_probs=80.2
Q ss_pred CCCCCCcceEEEcCCCCCCCHHHHHHHHhccCCeEE--------EEEeecCCCCCcceEEEEEeCChHHHHHHHHhcCCe
Q 021295 50 GSKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQE--------HQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKL 121 (314)
Q Consensus 50 ~~~~~~~~~l~V~nLp~~~~e~~l~~~F~~~G~v~~--------v~i~~~~~~g~~rG~afV~F~~~~~a~~a~~~l~~~ 121 (314)
.....+.++|||+|||+++++++|+++|++||+|+. |+|+.++.++++++||||+|+++++|++||+.||+.
T Consensus 7 ~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~g~ 86 (99)
T 2la6_A 7 HHSHSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGK 86 (99)
T ss_dssp CCSCCCCSEEEEECCCSSCCHHHHHHHHTTTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHHTTC
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHhCCC
Confidence 345667899999999999999999999999999999 999999999999999999999999999999999999
Q ss_pred eeCCeEEEEeecC
Q 021295 122 ELAGAQVEVKKAE 134 (314)
Q Consensus 122 ~~~gr~l~V~~a~ 134 (314)
.|.+++|+|++|+
T Consensus 87 ~~~g~~l~V~~A~ 99 (99)
T 2la6_A 87 EFSGNPIKVSFAT 99 (99)
T ss_dssp BSSSSBCEEEECC
T ss_pred EeCCcEEEEEecC
Confidence 9999999999874
No 76
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.82 E-value=6.4e-20 Score=141.39 Aligned_cols=88 Identities=30% Similarity=0.560 Sum_probs=82.5
Q ss_pred CCCCCCcceEEEcCCCCCCCHHHHHHHHhccCCeEEEEEeecCCCCCcceEEEEEeCChHHHHHHHHhcCCeeeCCeEEE
Q 021295 50 GSKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVE 129 (314)
Q Consensus 50 ~~~~~~~~~l~V~nLp~~~~e~~l~~~F~~~G~v~~v~i~~~~~~g~~rG~afV~F~~~~~a~~a~~~l~~~~~~gr~l~ 129 (314)
+....+.++|||+|||+++++++|+++|++||+|+.|.|++++.++++++||||+|+++++|++||+.||+..|.+++|+
T Consensus 20 ~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~ 99 (108)
T 2jrs_A 20 QKGSAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMK 99 (108)
T ss_dssp CCSCSSCEEEEEECCCSSCCHHHHHHHHTTTSCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTCCSSSSCCE
T ss_pred ccCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEE
Confidence 33556778999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeecCCCC
Q 021295 130 VKKAEPKK 137 (314)
Q Consensus 130 V~~a~~~~ 137 (314)
|++++++.
T Consensus 100 V~~a~~k~ 107 (108)
T 2jrs_A 100 VGHVTERT 107 (108)
T ss_dssp EECSCSSC
T ss_pred EEEcccCC
Confidence 99998764
No 77
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.82 E-value=9.4e-20 Score=139.18 Aligned_cols=87 Identities=23% Similarity=0.445 Sum_probs=81.0
Q ss_pred CCCCcceEEEcCCCCCCCHHHHHHHHhc-cCCeEEEEEeecCCCCCcceEEEEEeCChHHHHHHHHhcCCee-eCCeEEE
Q 021295 52 KDFKTKKIFVGGIPSSVNEDEFKDFFMQ-FGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLE-LAGAQVE 129 (314)
Q Consensus 52 ~~~~~~~l~V~nLp~~~~e~~l~~~F~~-~G~v~~v~i~~~~~~g~~rG~afV~F~~~~~a~~a~~~l~~~~-~~gr~l~ 129 (314)
+..+.++|||+|||+++++++|+++|++ ||+|++|+|+.++ ++++++||||+|+++++|++||+.||... |.+++|+
T Consensus 5 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~~G~v~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~g~~l~ 83 (104)
T 2dhg_A 5 SSGPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQ-TGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPVR 83 (104)
T ss_dssp CSSCCCCEEEECCCTTCCHHHHHHHHHHHCTTEEEEEEEECT-TCCEEEEEEEEESCHHHHHHHHHHTTTCCSSSSSCCC
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHHhCCCeEEEEEEECC-CCCccceEEEEECCHHHHHHHHHHccCCcccCCEeEE
Confidence 3456789999999999999999999999 9999999999998 99999999999999999999999999999 9999999
Q ss_pred EeecCCCCCC
Q 021295 130 VKKAEPKKPN 139 (314)
Q Consensus 130 V~~a~~~~~~ 139 (314)
|+++.++...
T Consensus 84 v~~a~~~~~~ 93 (104)
T 2dhg_A 84 LSVAIPKASR 93 (104)
T ss_dssp CCBCCCCCSC
T ss_pred EEEccCCCcC
Confidence 9999876544
No 78
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.82 E-value=7.4e-20 Score=135.59 Aligned_cols=82 Identities=22% Similarity=0.457 Sum_probs=78.1
Q ss_pred CcceEEEcCCCCCCCHHHHHHHHhccCCeEEEEEeecCCCCCcceEEEEEeCChHHHHHHHHhcCCeeeCCeEEEEeecC
Q 021295 55 KTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVKKAE 134 (314)
Q Consensus 55 ~~~~l~V~nLp~~~~e~~l~~~F~~~G~v~~v~i~~~~~~g~~rG~afV~F~~~~~a~~a~~~l~~~~~~gr~l~V~~a~ 134 (314)
+.++|||.|||+++++++|+++|++||+|++|+|+.++.++++++||||+|+++++|++|+ .||+..|.+++|+|++++
T Consensus 5 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~-~~~g~~~~g~~l~V~~a~ 83 (89)
T 3ucg_A 5 DARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSL-ALDESLFRGRQIKVIPKR 83 (89)
T ss_dssp HHTEEEEESCCTTCCHHHHHHHHGGGCCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHG-GGTTCEETTEECEEEETT
T ss_pred cCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHH-hcCCCEECCcEEEEEEcc
Confidence 4689999999999999999999999999999999999999999999999999999999999 999999999999999998
Q ss_pred CCC
Q 021295 135 PKK 137 (314)
Q Consensus 135 ~~~ 137 (314)
+..
T Consensus 84 ~~~ 86 (89)
T 3ucg_A 84 TNR 86 (89)
T ss_dssp TTS
T ss_pred CCC
Confidence 653
No 79
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.82 E-value=5.9e-20 Score=141.79 Aligned_cols=87 Identities=22% Similarity=0.394 Sum_probs=82.0
Q ss_pred CCCCcceEEEcCCCCCCCHHHHHHHHhccCCeEEEEEeecCCCCCcceEEEEEeCChHHHHHHHHhcCCeeeCCeEEEEe
Q 021295 52 KDFKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVK 131 (314)
Q Consensus 52 ~~~~~~~l~V~nLp~~~~e~~l~~~F~~~G~v~~v~i~~~~~~g~~rG~afV~F~~~~~a~~a~~~l~~~~~~gr~l~V~ 131 (314)
...+.++|||.|||+++++++|+++|++||+|+.|.|+.++.++++++||||+|+++++|++||+.||+..|.+++|+|+
T Consensus 22 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~ 101 (110)
T 1oo0_B 22 RSVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVD 101 (110)
T ss_dssp CBTTBEEEEEESCCTTCCHHHHHHHHGGGSCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCcEEEEE
Confidence 45567899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCCCCC
Q 021295 132 KAEPKKP 138 (314)
Q Consensus 132 ~a~~~~~ 138 (314)
++.++.+
T Consensus 102 ~a~~~~~ 108 (110)
T 1oo0_B 102 WCFVKGP 108 (110)
T ss_dssp ESEESSC
T ss_pred EcccCCC
Confidence 9987653
No 80
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.82 E-value=9.1e-20 Score=136.86 Aligned_cols=84 Identities=24% Similarity=0.503 Sum_probs=78.1
Q ss_pred CCCCCcceEEEcCCCCCCCHHHHHHHHhccCCeEEEEEeecCCCCCcceEEEEEeCChHHHHHHHHhcCCeeeCCeEEEE
Q 021295 51 SKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEV 130 (314)
Q Consensus 51 ~~~~~~~~l~V~nLp~~~~e~~l~~~F~~~G~v~~v~i~~~~~~g~~rG~afV~F~~~~~a~~a~~~l~~~~~~gr~l~V 130 (314)
..+.+.++|||.|||+++++++|+++|++||+|++|+|++++. +++++||||+|+++++|++||+.||+..|.+++|+|
T Consensus 11 ~~~~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~v~i~~~~~-g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 89 (95)
T 2ywk_A 11 AQEEADRTVFVGNLEARVREEILYELFLQAGPLTKVTICKDRE-GKPKSFGFVCFKHPESVSYAIALLNGIRLYGRPINV 89 (95)
T ss_dssp -CTTGGGEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTT-SCEEEEEEEEESSTHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEECCC-CCCceEEEEEECCHHHHHHHHHHhCCCEECCCEEEE
Confidence 3456779999999999999999999999999999999999975 889999999999999999999999999999999999
Q ss_pred eecCC
Q 021295 131 KKAEP 135 (314)
Q Consensus 131 ~~a~~ 135 (314)
++++.
T Consensus 90 ~~a~~ 94 (95)
T 2ywk_A 90 SGPSS 94 (95)
T ss_dssp ECCCC
T ss_pred EEcCC
Confidence 98864
No 81
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.82 E-value=1.5e-19 Score=133.41 Aligned_cols=81 Identities=37% Similarity=0.701 Sum_probs=76.1
Q ss_pred CCCCcceEEEcCCCCCCCHHHHHHHHhccCCeEEEEEeecCCCCCcceEEEEEeCChHHHHHHHHhcCCeeeCCeEEEEe
Q 021295 52 KDFKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVK 131 (314)
Q Consensus 52 ~~~~~~~l~V~nLp~~~~e~~l~~~F~~~G~v~~v~i~~~~~~g~~rG~afV~F~~~~~a~~a~~~l~~~~~~gr~l~V~ 131 (314)
.+.+.++|||+|||++++|++|+++|++||+|+.|+|++++.++++++||||+|+++++|++||+. +...|++++|+|+
T Consensus 7 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~-~~~~~~g~~i~v~ 85 (87)
T 3s7r_A 7 NEEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLDQ-KEHRLDGRVIDPK 85 (87)
T ss_dssp CCSCTTEEEEECCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHHHS-SCEEETTEEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccccEEEEEECCHHHHHHHHHh-CCCEECCEEEEEE
Confidence 456788999999999999999999999999999999999999999999999999999999999976 7788999999998
Q ss_pred ec
Q 021295 132 KA 133 (314)
Q Consensus 132 ~a 133 (314)
+|
T Consensus 86 ~A 87 (87)
T 3s7r_A 86 KA 87 (87)
T ss_dssp EC
T ss_pred eC
Confidence 76
No 82
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.81 E-value=5.8e-20 Score=135.80 Aligned_cols=84 Identities=14% Similarity=0.401 Sum_probs=78.5
Q ss_pred CCcceEEEcCCCCCCCHHHHHHHHhccCCeEEEEEeecCCCCC-cceEEEEEeCChHHHHHHHHhcCCeeeCCeEEEEee
Q 021295 54 FKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSR-SRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVKK 132 (314)
Q Consensus 54 ~~~~~l~V~nLp~~~~e~~l~~~F~~~G~v~~v~i~~~~~~g~-~rG~afV~F~~~~~a~~a~~~l~~~~~~gr~l~V~~ 132 (314)
.++++|||.|||+++++++|+++|++||+|++|.|+.++.+.. +++||||+|+++++|++|++.||+..|.++.|+|++
T Consensus 2 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 81 (88)
T 4a8x_A 2 MKPTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEITATA 81 (88)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeECCeEEEEEE
Confidence 3568999999999999999999999999999999999987766 899999999999999999999999999999999999
Q ss_pred cCCCC
Q 021295 133 AEPKK 137 (314)
Q Consensus 133 a~~~~ 137 (314)
+.+..
T Consensus 82 a~~~~ 86 (88)
T 4a8x_A 82 VLAPW 86 (88)
T ss_dssp ECCCC
T ss_pred CCCCC
Confidence 97654
No 83
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.81 E-value=2.3e-19 Score=133.68 Aligned_cols=83 Identities=20% Similarity=0.383 Sum_probs=78.2
Q ss_pred CCCCcceEEEcCCCCCCCHHHHHHHHhccCCeEEEEEeecCCCCCcceEEEEEeCChHHHHHHHHhcCCeeeCCeEEEEe
Q 021295 52 KDFKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVK 131 (314)
Q Consensus 52 ~~~~~~~l~V~nLp~~~~e~~l~~~F~~~G~v~~v~i~~~~~~g~~rG~afV~F~~~~~a~~a~~~l~~~~~~gr~l~V~ 131 (314)
.....++|||.|||+++++++|+++|++| .|++|+|+++ .++++++||||+|+++++|++||+ ||+..|.++.|+|.
T Consensus 6 ~~~~~~~l~v~nLp~~~t~~~l~~~F~~~-~i~~v~i~~~-~~g~~~g~afV~f~~~~~a~~A~~-~~g~~~~gr~i~v~ 82 (91)
T 2dgw_A 6 SGTTCHTVKLRGAPFNVTEKNVMEFLAPL-KPVAIRIVRN-AHGNKTGYIFVDFSNEEEVKQALK-CNREYMGGRYIEVF 82 (91)
T ss_dssp CCCCCCEEEEECCCSSCCHHHHHHHHTTS-CCSEEEEEEC-TTSCEEEEEEEECSSHHHHHHHHH-SCSEEETTEEEEEE
T ss_pred CCCCccEEEEECCCCCCCHHHHHHHHhhC-CceEEEEEEC-CCCCCceEEEEEECCHHHHHHHHH-hCCceeCCcEEEEE
Confidence 44567899999999999999999999999 9999999999 789999999999999999999999 99999999999999
Q ss_pred ecCCCC
Q 021295 132 KAEPKK 137 (314)
Q Consensus 132 ~a~~~~ 137 (314)
++.++.
T Consensus 83 ~a~~~~ 88 (91)
T 2dgw_A 83 REKSGP 88 (91)
T ss_dssp EESSCC
T ss_pred ECCcCC
Confidence 998764
No 84
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.81 E-value=4.7e-20 Score=139.30 Aligned_cols=85 Identities=15% Similarity=0.232 Sum_probs=79.8
Q ss_pred CCCCcceEEEcCCCCCCCHHHHHHHHhccCCeEEEEEeecCCCCCcceEEEEEeCChHHHHHHHHhcCCeeeCCeEEEEe
Q 021295 52 KDFKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVK 131 (314)
Q Consensus 52 ~~~~~~~l~V~nLp~~~~e~~l~~~F~~~G~v~~v~i~~~~~~g~~rG~afV~F~~~~~a~~a~~~l~~~~~~gr~l~V~ 131 (314)
.....++|||.|||++++|++|+++|++|++|+.+.|+.++.++++++||||+|+++++|++||+.||+..|.+++|+|+
T Consensus 11 ~~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~ 90 (98)
T 2cqp_A 11 GKPGPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLV 90 (98)
T ss_dssp CCCSSEEEEEESCCTTCCHHHHHHHTTTSCCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHcCCccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEE
Confidence 45567899999999999999999999999999999999998999999999999999999999999999999999999999
Q ss_pred ecCCC
Q 021295 132 KAEPK 136 (314)
Q Consensus 132 ~a~~~ 136 (314)
++...
T Consensus 91 ~a~~~ 95 (98)
T 2cqp_A 91 LGSGP 95 (98)
T ss_dssp ESSCS
T ss_pred EcCCC
Confidence 98754
No 85
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=1.4e-19 Score=136.39 Aligned_cols=83 Identities=11% Similarity=0.145 Sum_probs=76.8
Q ss_pred CCCcceEEEcCCCCCCCHHHHH----HHHhccCCeEEEEEeecCCCCCcceEEEEEeCChHHHHHHHHhcCCeeeCCeEE
Q 021295 53 DFKTKKIFVGGIPSSVNEDEFK----DFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQV 128 (314)
Q Consensus 53 ~~~~~~l~V~nLp~~~~e~~l~----~~F~~~G~v~~v~i~~~~~~g~~rG~afV~F~~~~~a~~a~~~l~~~~~~gr~l 128 (314)
..+.++|||+|||++++|++|+ ++|++||+|++|+|+.++.+ ++||||+|+++++|++||+.||+..|.+++|
T Consensus 6 ~~~~~~l~V~nL~~~~~~~~l~~~l~~~F~~~G~v~~v~i~~~~~~---rg~afV~f~~~~~A~~Ai~~l~g~~~~gr~l 82 (96)
T 2dgx_A 6 SGNGADVQVSNIDYRLSRKELQQLLQEAFARHGKVKSVELSPHTDY---QLKAVVQMENLQDAIGAVNSLHRYKIGSKKI 82 (96)
T ss_dssp CSSCEEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECSCCST---TCCEEEEESSHHHHHHHHHHHTTEEETTEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHHhccccCcEEEEEEEeCCCC---CeEEEEEECCHHHHHHHHHHhCCCEECCeEE
Confidence 3456899999999999999999 99999999999999998766 8899999999999999999999999999999
Q ss_pred EEeecCCCCC
Q 021295 129 EVKKAEPKKP 138 (314)
Q Consensus 129 ~V~~a~~~~~ 138 (314)
+|++|++...
T Consensus 83 ~V~~a~~~~~ 92 (96)
T 2dgx_A 83 LVSLATGASG 92 (96)
T ss_dssp EEEECCCSSC
T ss_pred EEEEcCCCCC
Confidence 9999987643
No 86
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.81 E-value=1.3e-19 Score=139.95 Aligned_cols=87 Identities=37% Similarity=0.667 Sum_probs=77.4
Q ss_pred CCCCCcceEEEcCCCCCCCHHHHHHHHhccCCeEEEEEeecCCCCCcceEEEEEeCChHHHHHHHHhcCCeeeCCeEEEE
Q 021295 51 SKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEV 130 (314)
Q Consensus 51 ~~~~~~~~l~V~nLp~~~~e~~l~~~F~~~G~v~~v~i~~~~~~g~~rG~afV~F~~~~~a~~a~~~l~~~~~~gr~l~V 130 (314)
+...+.++|||+|||++++|++|+++|++||+|++|+|++++.++++++||||+|+++++|++||+.++ ..|.++.|+|
T Consensus 20 ~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~~-~~l~g~~l~V 98 (109)
T 2rs2_A 20 HMGSSGCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR-HELDSKTIDP 98 (109)
T ss_dssp ------CCEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSSC-EEETTEEEEE
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHHccCCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHCC-CcCCCEEEEE
Confidence 345577899999999999999999999999999999999999999999999999999999999999975 9999999999
Q ss_pred eecCCCCC
Q 021295 131 KKAEPKKP 138 (314)
Q Consensus 131 ~~a~~~~~ 138 (314)
+++.++..
T Consensus 99 ~~a~~~~~ 106 (109)
T 2rs2_A 99 KVAFPRRA 106 (109)
T ss_dssp EECCCCCC
T ss_pred EEccCCCC
Confidence 99987654
No 87
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.81 E-value=7.1e-20 Score=143.15 Aligned_cols=83 Identities=20% Similarity=0.444 Sum_probs=78.5
Q ss_pred CCCCcceEEEcCCCCCCCHHHHHHHHhccCCeEEEEEeecCCCCCcceEEEEEeCChHHHHHHHHhcCCeeeCCeEEEEe
Q 021295 52 KDFKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVK 131 (314)
Q Consensus 52 ~~~~~~~l~V~nLp~~~~e~~l~~~F~~~G~v~~v~i~~~~~~g~~rG~afV~F~~~~~a~~a~~~l~~~~~~gr~l~V~ 131 (314)
+..+.++|||.|||++++|++|+++|++||+|++|+|++++.++++++||||+|+++++|++||+.||+..|.+++|+|+
T Consensus 36 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~ 115 (118)
T 2khc_A 36 EGPEGCNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQVGTKRLKVQ 115 (118)
T ss_dssp CCCCSEEEEEECSCTTCCHHHHHHHTTTSCEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCEETTEECCEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCEECCEEEEEE
Confidence 45567899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecC
Q 021295 132 KAE 134 (314)
Q Consensus 132 ~a~ 134 (314)
+++
T Consensus 116 ~ak 118 (118)
T 2khc_A 116 LKK 118 (118)
T ss_dssp EC-
T ss_pred ecC
Confidence 874
No 88
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=2.3e-19 Score=138.33 Aligned_cols=85 Identities=15% Similarity=0.438 Sum_probs=77.2
Q ss_pred CCCCCcceEEEcCCCCCCCHHHHHHHHhccCCeEEEEEeecCCCCCcceEEEEEeCChHHHHHHHHhcCCeeeCCeEEEE
Q 021295 51 SKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEV 130 (314)
Q Consensus 51 ~~~~~~~~l~V~nLp~~~~e~~l~~~F~~~G~v~~v~i~~~~~~g~~rG~afV~F~~~~~a~~a~~~l~~~~~~gr~l~V 130 (314)
....+.++|||.|||++++|++|+++|++||+|+.|+|+.+ .++++||||+|+++++|++||+.||...|.+++|+|
T Consensus 17 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~---~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V 93 (109)
T 1x4a_A 17 PAGNNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNR---RGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRV 93 (109)
T ss_dssp CCCCCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEECCS---SSSSCCEEEEESCHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEC---CCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEE
Confidence 34557789999999999999999999999999999999654 457999999999999999999999999999999999
Q ss_pred eecCCCCC
Q 021295 131 KKAEPKKP 138 (314)
Q Consensus 131 ~~a~~~~~ 138 (314)
++++++..
T Consensus 94 ~~a~~~~~ 101 (109)
T 1x4a_A 94 EFPRSGRG 101 (109)
T ss_dssp ECCCCCCC
T ss_pred EEcccCCC
Confidence 99987654
No 89
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.81 E-value=5.5e-21 Score=166.85 Aligned_cols=83 Identities=18% Similarity=0.374 Sum_probs=78.2
Q ss_pred CcceEEEcCCCCCCCHHHHHHHHhccC--CeEEEEEeecCCCCCcceEEEEEeCChHHHHHHHHhcCCeeeCCeEEEEee
Q 021295 55 KTKKIFVGGIPSSVNEDEFKDFFMQFG--DVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVKK 132 (314)
Q Consensus 55 ~~~~l~V~nLp~~~~e~~l~~~F~~~G--~v~~v~i~~~~~~g~~rG~afV~F~~~~~a~~a~~~l~~~~~~gr~l~V~~ 132 (314)
..++|||+|||+++||++|+++|++|| +|++|+|++|+.++++|+||||+|++.++|++||+.||+++|.+++|+|++
T Consensus 67 ~~~~lfVgnL~~~~te~~L~~~F~~~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~~Gr~l~V~~ 146 (229)
T 3q2s_C 67 KRIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTP 146 (229)
T ss_dssp --CEEEEESCCTTCCHHHHHHHHHTTTCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCBTTBCCEEEE
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHHCCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCeECCEEeEEEE
Confidence 567899999999999999999999999 999999999999999999999999999999999999999999999999999
Q ss_pred cCCCC
Q 021295 133 AEPKK 137 (314)
Q Consensus 133 a~~~~ 137 (314)
|++..
T Consensus 147 a~~~~ 151 (229)
T 3q2s_C 147 VNKQF 151 (229)
T ss_dssp CCHHH
T ss_pred CCCCc
Confidence 87653
No 90
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=8.9e-20 Score=139.09 Aligned_cols=82 Identities=20% Similarity=0.346 Sum_probs=74.3
Q ss_pred CCCcceEEEcCCCCCCCHHHHHHHHhccCCeEEEEEeecCCCCCcceEEEEEeCChHHHHHHHHhcC--CeeeCCeEEEE
Q 021295 53 DFKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGN--KLELAGAQVEV 130 (314)
Q Consensus 53 ~~~~~~l~V~nLp~~~~e~~l~~~F~~~G~v~~v~i~~~~~~g~~rG~afV~F~~~~~a~~a~~~l~--~~~~~gr~l~V 130 (314)
..+.++|||+|||++++|++|+++|++||+|++|+|+++ |+||||+|+++++|++||+.|+ ..+|.+++|.|
T Consensus 13 ~~~~~~LfV~nLp~~vte~dL~~lF~~fG~V~~v~i~~~------kGfaFVeF~~~~~A~~Ai~~l~~~~~~l~Gr~l~V 86 (105)
T 1sjq_A 13 GVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG------KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYI 86 (105)
T ss_dssp CCCCCEEEECSCCTTSCHHHHHHHHHHHCCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHTTSCCEETTEECCB
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHhccCCceECCEEEEE
Confidence 456789999999999999999999999999999999975 6899999999999999999775 48899999999
Q ss_pred eecCCCCCCC
Q 021295 131 KKAEPKKPNL 140 (314)
Q Consensus 131 ~~a~~~~~~~ 140 (314)
++|+++....
T Consensus 87 ~~A~~~~~~~ 96 (105)
T 1sjq_A 87 QFSNHKELKT 96 (105)
T ss_dssp CCCSSSSCCC
T ss_pred EEcCCCCCCc
Confidence 9998876554
No 91
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.81 E-value=3.4e-20 Score=147.88 Aligned_cols=90 Identities=20% Similarity=0.345 Sum_probs=82.9
Q ss_pred CCCCCcceEEEcCCCCCCCHHHHHHHHhccCCeEE--EEEeecCCCCCcceEEEEEeCChHHHHHHHHhcCCe----eeC
Q 021295 51 SKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQE--HQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKL----ELA 124 (314)
Q Consensus 51 ~~~~~~~~l~V~nLp~~~~e~~l~~~F~~~G~v~~--v~i~~~~~~g~~rG~afV~F~~~~~a~~a~~~l~~~----~~~ 124 (314)
..+...++|||+|||++++|++|+++|++||+|+. |+|++|+.++++||||||+|+++ +|++||+.||+. .|+
T Consensus 18 ~~~~~~~~lfV~nL~~~~te~~L~~~F~~~G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~~~~ 96 (131)
T 2m2b_A 18 SSENANDTIILRNLNPHSTMDSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQALHPPLTID 96 (131)
T ss_dssp CCSCCCCEEEECSCCTTCCSHHHHHHHGGGCCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTTCCCSCCGG
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhcCCCCCccCC
Confidence 34567889999999999999999999999999976 99999999999999999999999 999999999999 999
Q ss_pred CeEEEEeecCCCCCCCC
Q 021295 125 GAQVEVKKAEPKKPNLP 141 (314)
Q Consensus 125 gr~l~V~~a~~~~~~~~ 141 (314)
+++|+|+++.+++....
T Consensus 97 gr~l~V~~a~~~~~~~~ 113 (131)
T 2m2b_A 97 GKTINVEFAKGSKRDMA 113 (131)
T ss_dssp GCCCCCEECCCSCCCCC
T ss_pred CEEEEEEECCCCCCCCC
Confidence 99999999988765443
No 92
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=4e-20 Score=143.76 Aligned_cols=86 Identities=21% Similarity=0.436 Sum_probs=80.2
Q ss_pred CCCCcceEEEcCCCCCCCHHHHHHHHhccCCeEEEEEeecCCCCCcceEEEEEeCChHHHHHHHHhcCCeeeCCeEEEEe
Q 021295 52 KDFKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVK 131 (314)
Q Consensus 52 ~~~~~~~l~V~nLp~~~~e~~l~~~F~~~G~v~~v~i~~~~~~g~~rG~afV~F~~~~~a~~a~~~l~~~~~~gr~l~V~ 131 (314)
++...++|||.|||+++++++|+++|++||+|+.|+|+.++.++++++||||+|+++++|++|| .||+..|.++.|+|+
T Consensus 21 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~ 99 (114)
T 2cq4_A 21 EERDARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAI-GLTGQRLLGVPIIVQ 99 (114)
T ss_dssp THHHHTEEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHH-HHTTEEETTEEEEEE
T ss_pred ccCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHH-HcCCCEeCCeEEEEE
Confidence 3445689999999999999999999999999999999999999999999999999999999999 999999999999999
Q ss_pred ecCCCCC
Q 021295 132 KAEPKKP 138 (314)
Q Consensus 132 ~a~~~~~ 138 (314)
++.++..
T Consensus 100 ~a~~~~~ 106 (114)
T 2cq4_A 100 ASQAEKN 106 (114)
T ss_dssp EHHHHHH
T ss_pred ecCCCcc
Confidence 9987643
No 93
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.81 E-value=2e-19 Score=138.02 Aligned_cols=82 Identities=17% Similarity=0.338 Sum_probs=78.1
Q ss_pred CCCCcceEEEcCCCCCCCHHHHHHHHhccCCeEEEEEeecCCCCCcceEEEEEeCChHHHHHHHHhcCCeeeCCeEEEEe
Q 021295 52 KDFKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVK 131 (314)
Q Consensus 52 ~~~~~~~l~V~nLp~~~~e~~l~~~F~~~G~v~~v~i~~~~~~g~~rG~afV~F~~~~~a~~a~~~l~~~~~~gr~l~V~ 131 (314)
...+.++|||.|||++++|++|+++|++||+|++|.|+.++ ++++++||||+|+++++|++||+.||+..|.+++|+|+
T Consensus 25 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 103 (107)
T 3ulh_A 25 GVETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDR-SGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMNIQ 103 (107)
T ss_dssp CCCCSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEE
Confidence 44567899999999999999999999999999999999998 99999999999999999999999999999999999999
Q ss_pred ecC
Q 021295 132 KAE 134 (314)
Q Consensus 132 ~a~ 134 (314)
+|.
T Consensus 104 ~a~ 106 (107)
T 3ulh_A 104 LVT 106 (107)
T ss_dssp EEC
T ss_pred EeC
Confidence 986
No 94
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.81 E-value=1.6e-19 Score=139.81 Aligned_cols=87 Identities=15% Similarity=0.283 Sum_probs=79.7
Q ss_pred CCCCCcceEEEcCCCCCCCHHHHH---HHHhccCCeEEEEEeecCCCC---CcceEEEEEeCChHHHHHHHHhcCCeeeC
Q 021295 51 SKDFKTKKIFVGGIPSSVNEDEFK---DFFMQFGDVQEHQIMRDHSTS---RSRGFGFITFDTEQAVDDLLAKGNKLELA 124 (314)
Q Consensus 51 ~~~~~~~~l~V~nLp~~~~e~~l~---~~F~~~G~v~~v~i~~~~~~g---~~rG~afV~F~~~~~a~~a~~~l~~~~~~ 124 (314)
....+.++|||.|||++++|++|+ ++|++||+|++|.|++++.++ ++++||||+|+++++|++||+.||+..|+
T Consensus 10 ~r~~~~~~l~V~nLp~~~~~~~l~~~~~~F~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~ 89 (111)
T 2cpi_A 10 VRVVQKNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVD 89 (111)
T ss_dssp CCCCCSSCEEEEEECTTTCCHHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEET
T ss_pred ccccCCCEEEEECCCCCCCHHHHHHHHHHhhccCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCEEC
Confidence 345667899999999999999999 999999999999999987654 56699999999999999999999999999
Q ss_pred CeEEEEeecCCCC
Q 021295 125 GAQVEVKKAEPKK 137 (314)
Q Consensus 125 gr~l~V~~a~~~~ 137 (314)
+++|+|++|.++.
T Consensus 90 gr~l~V~~a~~k~ 102 (111)
T 2cpi_A 90 GRTLKASLGTTKY 102 (111)
T ss_dssp TEEEEEESCCCCS
T ss_pred CEEEEEEeccccc
Confidence 9999999998875
No 95
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.80 E-value=4.8e-19 Score=139.71 Aligned_cols=89 Identities=15% Similarity=0.271 Sum_probs=82.7
Q ss_pred CCCCcceEEEcCCCCCCCHHHHHHHHhccCCeEEEEEeecCCCCCcceEEEEEeCChHHHHHHHHhcCCeeeCCeEEEEe
Q 021295 52 KDFKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVK 131 (314)
Q Consensus 52 ~~~~~~~l~V~nLp~~~~e~~l~~~F~~~G~v~~v~i~~~~~~g~~rG~afV~F~~~~~a~~a~~~l~~~~~~gr~l~V~ 131 (314)
...+.++|||.|||+++++++|+++|++||+|+.|+|+.++ ++++++||||+|++.++|++||+.||+..|.+++|+|+
T Consensus 31 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~ 109 (124)
T 2kt5_A 31 GVETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDR-SGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQ 109 (124)
T ss_dssp CCSSCEEEEEESCCSSCCHHHHHHHHHTTSCCSEEEEECCS-SSSCCSEEEEEESSHHHHHHHHHHHTTEESSSCEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEECC-CCCEeeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEE
Confidence 44567899999999999999999999999999999999998 89999999999999999999999999999999999999
Q ss_pred ecCCCCCCCC
Q 021295 132 KAEPKKPNLP 141 (314)
Q Consensus 132 ~a~~~~~~~~ 141 (314)
+|.+.....+
T Consensus 110 ~a~~~~~~~~ 119 (124)
T 2kt5_A 110 LVASQIDLEH 119 (124)
T ss_dssp EECCTTCCCC
T ss_pred EeCCCCCCCC
Confidence 9998765544
No 96
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=1.3e-19 Score=138.40 Aligned_cols=82 Identities=17% Similarity=0.363 Sum_probs=77.1
Q ss_pred CCCCcceEEEcCCCCCCCHHHHHHHHhccCCeEEEEEeecCCCCCcceEEEEEeCChHHHHHHHHhcCCeeeCCeEEEEe
Q 021295 52 KDFKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVK 131 (314)
Q Consensus 52 ~~~~~~~l~V~nLp~~~~e~~l~~~F~~~G~v~~v~i~~~~~~g~~rG~afV~F~~~~~a~~a~~~l~~~~~~gr~l~V~ 131 (314)
.+.+.++|||+|||+++|+++|+++|++||+|++|.|++++. ++++|||||+|+++++|++||+ ++++.|.+++|.|+
T Consensus 7 ~~~~~~~lfV~~Lp~~~te~~L~~~F~~~G~v~~v~i~~d~~-g~~rG~aFV~F~~~e~a~~Ai~-~~~~~~~gr~l~V~ 84 (103)
T 1s79_A 7 NDVKNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLH-KAFKGSIFVVFDSIESAKKFVE-TPGQKYKETDLLIL 84 (103)
T ss_dssp SCSGGGCEEEECCCTTCCHHHHHHHHHTSSCEEEEEEECCCT-TSCCCEEEEEESSHHHHHHHHT-SSCCCCTTTTCEEE
T ss_pred ccCCCCEEEEECCCCCCCHHHHHHHHhhcCCEEEEEEEECCC-CCCccEEEEEECCHHHHHHHHH-cCCCEECCEEEEEE
Confidence 456779999999999999999999999999999999999987 9999999999999999999999 79999999999999
Q ss_pred ecCC
Q 021295 132 KAEP 135 (314)
Q Consensus 132 ~a~~ 135 (314)
++.+
T Consensus 85 ~~~~ 88 (103)
T 1s79_A 85 FKDD 88 (103)
T ss_dssp EHHH
T ss_pred EchH
Confidence 8765
No 97
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.80 E-value=2.6e-20 Score=141.51 Aligned_cols=84 Identities=17% Similarity=0.256 Sum_probs=79.5
Q ss_pred CCcceEEEcCCCC------CCCHHHHHHHHhccCCeEEEEEeecCCCCCcceEEEEEeCChHHHHHHHHhcCCeeeCC-e
Q 021295 54 FKTKKIFVGGIPS------SVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAG-A 126 (314)
Q Consensus 54 ~~~~~l~V~nLp~------~~~e~~l~~~F~~~G~v~~v~i~~~~~~g~~rG~afV~F~~~~~a~~a~~~l~~~~~~g-r 126 (314)
...++|||.|||+ ++++++|+++|++||+|++|+|++++.|++++|||||+|+++++|++||+.||+..|.+ +
T Consensus 4 ~~~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~g~r 83 (100)
T 3ns6_A 4 GSDQYIVVNGAPVIPSAKVPVLKKALTSLFSKAGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGKRLDLKH 83 (100)
T ss_dssp CGGGEEEEESCCCCBGGGHHHHHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCBSSSSC
T ss_pred CcCcEEEEeCCCcCChHHHHHHHHHHHHHHHhcCCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCCcccCCCe
Confidence 3468999999999 99999999999999999999999999999999999999999999999999999999999 9
Q ss_pred EEEEeecCCCC
Q 021295 127 QVEVKKAEPKK 137 (314)
Q Consensus 127 ~l~V~~a~~~~ 137 (314)
+|+|++|.+++
T Consensus 84 ~l~V~~a~~~~ 94 (100)
T 3ns6_A 84 RLFLYTMKDVE 94 (100)
T ss_dssp BCEEEESHHHH
T ss_pred EEEEEECchhh
Confidence 99999987643
No 98
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.80 E-value=2.4e-19 Score=133.73 Aligned_cols=84 Identities=21% Similarity=0.368 Sum_probs=78.3
Q ss_pred CCCcceEEEcCCCCCCCHHHHHHHHhccCCeEEEEEeecCCCCCcceEEEEEeCChHHHHHHHHhcCCeeeCCeEEEEee
Q 021295 53 DFKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVKK 132 (314)
Q Consensus 53 ~~~~~~l~V~nLp~~~~e~~l~~~F~~~G~v~~v~i~~~~~~g~~rG~afV~F~~~~~a~~a~~~l~~~~~~gr~l~V~~ 132 (314)
..+.++|||.|||+++++++|+++|++||+|+.|+|+++ ++++++||||+|+++++|++||+.||+..|.+++|+|++
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~--~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~ 82 (92)
T 2dgv_A 5 SSGACQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKME--NGKSKGCGVVKFESPEVAERACRMMNGMKLSGREIDVRI 82 (92)
T ss_dssp SSSCCEEEECSCCTTCCHHHHHHHHHTTSCEEEEEEEES--SSCEEEEEEEEESSHHHHHHHHHHHTTCCBTTBCCCCEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcc--CCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 456789999999999999999999999999999999984 788999999999999999999999999999999999999
Q ss_pred cCCCCC
Q 021295 133 AEPKKP 138 (314)
Q Consensus 133 a~~~~~ 138 (314)
+++...
T Consensus 83 a~~~~~ 88 (92)
T 2dgv_A 83 DRNASG 88 (92)
T ss_dssp CSCCSS
T ss_pred cCCCCC
Confidence 987654
No 99
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.80 E-value=5.3e-20 Score=138.16 Aligned_cols=82 Identities=16% Similarity=0.266 Sum_probs=76.3
Q ss_pred CCcceEEEcCCCCCCCHHHHHHHHhccCCeEEEEEeecCCCCCcceEEEEEeCChHHHHHHHHhcCCeeeCCeEEEEeec
Q 021295 54 FKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVKKA 133 (314)
Q Consensus 54 ~~~~~l~V~nLp~~~~e~~l~~~F~~~G~v~~v~i~~~~~~g~~rG~afV~F~~~~~a~~a~~~l~~~~~~gr~l~V~~a 133 (314)
...++|||.|||++++|++|+++|++|++|+.+.|+.++.++++++||||+|+++++|++||+.||+..|.+++|+|+++
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~gr~l~v~~a 92 (95)
T 2ek1_A 13 PGPTVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLSGP 92 (95)
T ss_dssp --CEEEEEECCCTTCCHHHHHHHTTTSCBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEec
Confidence 45689999999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred CC
Q 021295 134 EP 135 (314)
Q Consensus 134 ~~ 135 (314)
.+
T Consensus 93 ~s 94 (95)
T 2ek1_A 93 SS 94 (95)
T ss_dssp C-
T ss_pred cC
Confidence 63
No 100
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=4e-19 Score=135.14 Aligned_cols=84 Identities=15% Similarity=0.272 Sum_probs=75.3
Q ss_pred CCCCcceEEEcCCCCCCCHHHHHHHHhccCCeEEEEEeecCCCCCcceEEEEEeCChHHHHHHHHhc--CCeeeCCeEEE
Q 021295 52 KDFKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKG--NKLELAGAQVE 129 (314)
Q Consensus 52 ~~~~~~~l~V~nLp~~~~e~~l~~~F~~~G~v~~v~i~~~~~~g~~rG~afV~F~~~~~a~~a~~~l--~~~~~~gr~l~ 129 (314)
...++++|||+|||++++|++|+++|++||+|++|.|+++ |+||||+|+++++|++||+.| +.+.|.+++|.
T Consensus 11 ~~~p~~~l~V~nLp~~~te~~L~~~F~~fG~v~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~ 84 (101)
T 2cq1_A 11 DGAPSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKG------KNQAFLELATEEAAITMVNYYSAVTPHLRNQPIY 84 (101)
T ss_dssp CSSCCSEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCCEETTEECE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEECC------CCEEEEEECCHHHHHHHHHHhccCCceECCcEEE
Confidence 4456789999999999999999999999999999998865 789999999999999999976 57889999999
Q ss_pred EeecCCCCCCCC
Q 021295 130 VKKAEPKKPNLP 141 (314)
Q Consensus 130 V~~a~~~~~~~~ 141 (314)
|++++++.....
T Consensus 85 V~~a~~~~~~~~ 96 (101)
T 2cq1_A 85 IQYSNHKELKTS 96 (101)
T ss_dssp EEECSCSSCCCC
T ss_pred EEEcCcccCcCC
Confidence 999998766543
No 101
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.80 E-value=7.1e-19 Score=135.42 Aligned_cols=80 Identities=25% Similarity=0.436 Sum_probs=74.0
Q ss_pred CCCcceEEEcCCCCCCCHHHHHHHHhccCCeEEEEEeecCCCCCcceEEEEEeCChHHHHHHHHhcCCeeeCC-----eE
Q 021295 53 DFKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAG-----AQ 127 (314)
Q Consensus 53 ~~~~~~l~V~nLp~~~~e~~l~~~F~~~G~v~~v~i~~~~~~g~~rG~afV~F~~~~~a~~a~~~l~~~~~~g-----r~ 127 (314)
....++|||.|||++++|++|+++|++||+|+.|+|+.+ +||||+|+++++|++||+.||+..|.+ ++
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~i~~~-------g~afV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~~ 84 (108)
T 1x4c_A 12 RRSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-------GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAY 84 (108)
T ss_dssp CSCCCEEEEESCCSSCCHHHHHHHHGGGSCEEEEEEETT-------TEEEEEESSHHHHHHHHHHSSSEEEECTTSCEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEecC-------CEEEEEECCHHHHHHHHHHHCcCCccCCcCcceE
Confidence 345789999999999999999999999999999999876 799999999999999999999999999 99
Q ss_pred EEEeecCCCCCC
Q 021295 128 VEVKKAEPKKPN 139 (314)
Q Consensus 128 l~V~~a~~~~~~ 139 (314)
|+|++|.++...
T Consensus 85 i~V~~a~~~~~~ 96 (108)
T 1x4c_A 85 IRVKVDGPRSPS 96 (108)
T ss_dssp EEEEESSCCSCC
T ss_pred EEEEeCCCCCCC
Confidence 999999986543
No 102
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=6.5e-20 Score=140.00 Aligned_cols=86 Identities=27% Similarity=0.547 Sum_probs=81.3
Q ss_pred CCCcceEEEcCCCCCCCHHHHHHHHhccCCeEEEEEeecCCCCCcceEEEEEeCChHHHHHHHHhcCCeeeCCeEEEEee
Q 021295 53 DFKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVKK 132 (314)
Q Consensus 53 ~~~~~~l~V~nLp~~~~e~~l~~~F~~~G~v~~v~i~~~~~~g~~rG~afV~F~~~~~a~~a~~~l~~~~~~gr~l~V~~ 132 (314)
+.+.++|||+|||+++++++|+++|++||+|+.|.|+.++.++++++||||+|++.++|++||+.||+..|.+++|+|++
T Consensus 5 ~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 84 (104)
T 1p1t_A 5 DRSLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVDN 84 (104)
T ss_dssp HHHHSCEEEESCCTTSCHHHHHHHHHTTSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSCSSSCBEEEE
T ss_pred CCCccEEEEeCCCCcCCHHHHHHHHHhcCCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEe
Confidence 34578999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCC
Q 021295 133 AEPKKP 138 (314)
Q Consensus 133 a~~~~~ 138 (314)
+.++..
T Consensus 85 a~~~~~ 90 (104)
T 1p1t_A 85 AASEKN 90 (104)
T ss_dssp TTCTTH
T ss_pred CCCccc
Confidence 987654
No 103
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=2.8e-19 Score=137.71 Aligned_cols=87 Identities=23% Similarity=0.410 Sum_probs=80.5
Q ss_pred CCCcceEEEcCCCCCCCHHHHHHHHhccCC-eEEEEEe-ecCCCCCcceEEEEEeCChHHHHHHHHhcC--CeeeCCeEE
Q 021295 53 DFKTKKIFVGGIPSSVNEDEFKDFFMQFGD-VQEHQIM-RDHSTSRSRGFGFITFDTEQAVDDLLAKGN--KLELAGAQV 128 (314)
Q Consensus 53 ~~~~~~l~V~nLp~~~~e~~l~~~F~~~G~-v~~v~i~-~~~~~g~~rG~afV~F~~~~~a~~a~~~l~--~~~~~gr~l 128 (314)
..+.++|||+|||+++++++|+++|++||+ |++|.|+ .++.++++++||||+|+++++|++||+.|+ .+.|.+++|
T Consensus 5 s~~~~~l~V~nLp~~~t~~~l~~~f~~~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~~g~~l 84 (109)
T 2dis_A 5 SSGNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQI 84 (109)
T ss_dssp CCCSEEEEEECCCTTSCHHHHHHHHHHHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCBTTBCC
T ss_pred ccCCCEEEEeCCCCcCCHHHHHHHHHHhcCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCceecCCeE
Confidence 345789999999999999999999999998 9999999 888889999999999999999999999996 689999999
Q ss_pred EEeecCCCCCC
Q 021295 129 EVKKAEPKKPN 139 (314)
Q Consensus 129 ~V~~a~~~~~~ 139 (314)
+|++|.++...
T Consensus 85 ~V~~a~~~~~~ 95 (109)
T 2dis_A 85 AVDWAEPEIDV 95 (109)
T ss_dssp EEEESCSSCST
T ss_pred EEEEcCCCCCc
Confidence 99999987654
No 104
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.80 E-value=1.6e-19 Score=142.41 Aligned_cols=84 Identities=17% Similarity=0.441 Sum_probs=79.0
Q ss_pred CCcceEEEcCCCCCCCHHHHHHHHhccCCeEEEEEeecCCCCCcceEEEEEeCChHHHHHHHHhcCCeeeCCeEEEEeec
Q 021295 54 FKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVKKA 133 (314)
Q Consensus 54 ~~~~~l~V~nLp~~~~e~~l~~~F~~~G~v~~v~i~~~~~~g~~rG~afV~F~~~~~a~~a~~~l~~~~~~gr~l~V~~a 133 (314)
.+.++|||+|||+++++++|+++|++||+|++|+|+.++.++++++||||+|+++++|++|| .||+..|.++.|+|+++
T Consensus 34 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a 112 (124)
T 2jwn_A 34 IDKRSVYVGNVDYGSTAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAV-AMDETVFRGRTIKVLPK 112 (124)
T ss_dssp HHHTEEEEEEECTTCCHHHHHHHHHTTSCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHH-TTTTCEETTEECEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEEC
Confidence 34689999999999999999999999999999999999999999999999999999999999 79999999999999999
Q ss_pred CCCCC
Q 021295 134 EPKKP 138 (314)
Q Consensus 134 ~~~~~ 138 (314)
++..+
T Consensus 113 ~~~~~ 117 (124)
T 2jwn_A 113 RTNMP 117 (124)
T ss_dssp SCCCS
T ss_pred CCCCC
Confidence 86544
No 105
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.80 E-value=2.1e-19 Score=147.53 Aligned_cols=82 Identities=21% Similarity=0.387 Sum_probs=77.9
Q ss_pred CcceEEEcCCCCCCCHHHHHHHHhccC--CeEEEEEeecCCCCCcceEEEEEeCChHHHHHHHHhcCCeeeCCeEEEEee
Q 021295 55 KTKKIFVGGIPSSVNEDEFKDFFMQFG--DVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVKK 132 (314)
Q Consensus 55 ~~~~l~V~nLp~~~~e~~l~~~F~~~G--~v~~v~i~~~~~~g~~rG~afV~F~~~~~a~~a~~~l~~~~~~gr~l~V~~ 132 (314)
..++|||+|||++++|++|+++|++|| +|++|+|+.|+.+++++|||||+|+++++|++||+.||+..|.+++|+|++
T Consensus 54 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~~Gr~l~V~~ 133 (156)
T 3n9u_C 54 RRAAVYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGKVLNGEKVDVRP 133 (156)
T ss_dssp --CEEEEECCCTTCCHHHHHHHHHHTTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEETTEECEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEeEEEE
Confidence 468999999999999999999999999 999999999999999999999999999999999999999999999999999
Q ss_pred cCCC
Q 021295 133 AEPK 136 (314)
Q Consensus 133 a~~~ 136 (314)
|.++
T Consensus 134 a~~~ 137 (156)
T 3n9u_C 134 ATRQ 137 (156)
T ss_dssp CCHH
T ss_pred cCCC
Confidence 9764
No 106
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.80 E-value=9.6e-19 Score=133.44 Aligned_cols=81 Identities=25% Similarity=0.454 Sum_probs=74.0
Q ss_pred CCCCcceEEEcCCCCCCCHHHHHHHHhccCCeEEEEEeecCCCCCcceEEEEEeCChHHHHHHHHhcCCeeeCCeEEEEe
Q 021295 52 KDFKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVK 131 (314)
Q Consensus 52 ~~~~~~~l~V~nLp~~~~e~~l~~~F~~~G~v~~v~i~~~~~~g~~rG~afV~F~~~~~a~~a~~~l~~~~~~gr~l~V~ 131 (314)
...+.++|||.|||+++++++|+++|++||+|++|+|++ +||||+|+++++|++||+.||+..|.+++|+|+
T Consensus 7 ~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~~~~--------~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 78 (103)
T 2dgu_A 7 GMAKVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKLK--------DYAFIHFDERDGAVKAMEEMNGKDLEGENIEIV 78 (103)
T ss_dssp CCCCCCCEEEECCCTTCCHHHHHHHHHHHSCEEEEEECS--------SCEEEEESSHHHHHHHHHHHTTEEETTEEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEC--------CEEEEEeCCHHHHHHHHHHHCCCccCCCEEEEE
Confidence 345678999999999999999999999999999999873 499999999999999999999999999999999
Q ss_pred ecCCCCCCC
Q 021295 132 KAEPKKPNL 140 (314)
Q Consensus 132 ~a~~~~~~~ 140 (314)
++.++....
T Consensus 79 ~a~~~~~~~ 87 (103)
T 2dgu_A 79 FAKPPDQKR 87 (103)
T ss_dssp ECCCCCCCC
T ss_pred EcCCCcccc
Confidence 998876543
No 107
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=3.2e-19 Score=136.44 Aligned_cols=85 Identities=20% Similarity=0.321 Sum_probs=78.2
Q ss_pred CCCCcceEEEcCCCCCCCHHHHHHHHhccCCeEE-EEEeecCCCCCcceEEEEEeCChHHHHHHHHhcCCeeeCCeEEEE
Q 021295 52 KDFKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQE-HQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEV 130 (314)
Q Consensus 52 ~~~~~~~l~V~nLp~~~~e~~l~~~F~~~G~v~~-v~i~~~~~~g~~rG~afV~F~~~~~a~~a~~~l~~~~~~gr~l~V 130 (314)
...+.++|||+|||++++|++|+++|++|+.|++ |.|+.+ .+++++|||||+|+++++|++||+. |...|.++.|+|
T Consensus 11 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~v~i~~~-~~g~~~G~afV~F~~~~~a~~A~~~-~~~~~~gr~i~v 88 (104)
T 1wg5_A 11 DTANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVD-FQGRSTGEAFVQFASQEIAEKALKK-HKERIGHRYIEI 88 (104)
T ss_dssp SCSCCCEEEEESCCTTCCHHHHHHHTTTCCEEEEEEECCBC-SSSCBCSEEEEEESSHHHHHHHHTT-TTCCSSSSCCEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCcceeEEEEEC-CCCCcceEEEEEECCHHHHHHHHHh-CcchhCCcEEEE
Confidence 3456789999999999999999999999999997 889888 7899999999999999999999998 999999999999
Q ss_pred eecCCCCC
Q 021295 131 KKAEPKKP 138 (314)
Q Consensus 131 ~~a~~~~~ 138 (314)
.++.+++.
T Consensus 89 ~~~~~~~~ 96 (104)
T 1wg5_A 89 FKSSRAEV 96 (104)
T ss_dssp EEECTTTS
T ss_pred EECCHHHH
Confidence 99876654
No 108
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.79 E-value=2.6e-19 Score=136.23 Aligned_cols=83 Identities=13% Similarity=0.131 Sum_probs=73.6
Q ss_pred CCCCcceEEEcCCCC-CCCHHHHHHHHhccCCeEEEEEeecCCCCCcceEEEEEeCChHHHHHHHHhcC--CeeeCCeEE
Q 021295 52 KDFKTKKIFVGGIPS-SVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGN--KLELAGAQV 128 (314)
Q Consensus 52 ~~~~~~~l~V~nLp~-~~~e~~l~~~F~~~G~v~~v~i~~~~~~g~~rG~afV~F~~~~~a~~a~~~l~--~~~~~gr~l 128 (314)
...+.++|||+|||+ +++|+||+++|++||+|++|+|+++ ++||||+|+++++|++||+.|| ..+|.+++|
T Consensus 11 ~~~p~~~l~V~nLp~~~~te~dL~~lF~~fG~V~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l 84 (102)
T 1x4d_A 11 RVETRRVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLILNK------INEAFIEMATTEDAQAAVDYYTTTPALVFGKPV 84 (102)
T ss_dssp CCCCCCEEEEESCCCSSSHHHHHHTTTGGGSCEEEEEECSS------SSCEEEEESSHHHHHHHHHHHHHSCCEETTEEC
T ss_pred CCCCCCEEEEeCCCCCcCCHHHHHHHHHhcCCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHHcCCCceECCcEE
Confidence 344678999999999 9999999999999999999999875 4799999999999999999876 467999999
Q ss_pred EEeecCCCCCCC
Q 021295 129 EVKKAEPKKPNL 140 (314)
Q Consensus 129 ~V~~a~~~~~~~ 140 (314)
.|.+|..++...
T Consensus 85 ~V~~a~~~~~~~ 96 (102)
T 1x4d_A 85 RVHLSQKYKRIK 96 (102)
T ss_dssp EEEEECCCTTSS
T ss_pred EEEECCCCCCCC
Confidence 999999765443
No 109
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.79 E-value=6.8e-19 Score=133.68 Aligned_cols=84 Identities=18% Similarity=0.390 Sum_probs=76.0
Q ss_pred CCCCcceEEEcCCCCCCCHHHHHHHHhccCCeEEEEEeecCCCCCcceEEEEEeCChHHHHHHHHhcCCeeeCCeEEEEe
Q 021295 52 KDFKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVK 131 (314)
Q Consensus 52 ~~~~~~~l~V~nLp~~~~e~~l~~~F~~~G~v~~v~i~~~~~~g~~rG~afV~F~~~~~a~~a~~~l~~~~~~gr~l~V~ 131 (314)
.+.+.++|||.|||+++++++|+++|++|++| +|+.+ .++++++||||+|+++++|++||+.||+..|.+++|+|+
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v---~~~~~-~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 86 (101)
T 2fc9_A 11 WSGESKTLVLSNLSYSATEETLQEVFEKATFI---KVPQN-QNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLE 86 (101)
T ss_dssp CSCCCSEEEEESCCTTCCHHHHHHHCSSCSEE---ECCBC-SSSCBCSEEEEECSSHHHHHHHHHHTSSEEETTEEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCEE---EEEEC-CCCCEeeEEEEEECCHHHHHHHHHHhCCCEeCCeEEEEE
Confidence 45678999999999999999999999999876 56666 688899999999999999999999999999999999999
Q ss_pred ecCCCCCC
Q 021295 132 KAEPKKPN 139 (314)
Q Consensus 132 ~a~~~~~~ 139 (314)
++.++...
T Consensus 87 ~a~~~~~~ 94 (101)
T 2fc9_A 87 LQGPRGSP 94 (101)
T ss_dssp ECSSCCCC
T ss_pred EcCCCCCC
Confidence 99887543
No 110
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=2.1e-19 Score=137.05 Aligned_cols=83 Identities=17% Similarity=0.249 Sum_probs=75.4
Q ss_pred CCCCcceEEEcCCCCCCCHHHHHHHHhccCCeEEEEEeecCCCCCcceEEEEEeCChHHHHHHHHhcCCeeeCCeEEEEe
Q 021295 52 KDFKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVK 131 (314)
Q Consensus 52 ~~~~~~~l~V~nLp~~~~e~~l~~~F~~~G~v~~v~i~~~~~~g~~rG~afV~F~~~~~a~~a~~~l~~~~~~gr~l~V~ 131 (314)
.....++|||.|||++++|+||+++|++|+.| +|+|++|+ +++++|||||+|+++++|++||+ +|...|.++.|+|.
T Consensus 11 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~~-~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~i~V~ 87 (102)
T 1wez_A 11 QSTTGHCVHMRGLPYRATENDIYNFFSPLNPM-RVHIEIGP-DGRVTGEADVEFATHEDAVAAMA-KDKANMQHRYVELF 87 (102)
T ss_dssp CCSSSCEEEEESCCTTCCHHHHHHSSCSCCCS-EEEEEESS-SSCEEEEEEEECSSSHHHHHHHT-TSSCCSSSSCCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHcCce-EEEEEECC-CCCEeeEEEEEECCHHHHHHHHH-hCCCeECCcEEEEE
Confidence 34567899999999999999999999999954 99999997 89999999999999999999995 69999999999999
Q ss_pred ecCCCC
Q 021295 132 KAEPKK 137 (314)
Q Consensus 132 ~a~~~~ 137 (314)
.+.+..
T Consensus 88 ~~~~~~ 93 (102)
T 1wez_A 88 LNSTAG 93 (102)
T ss_dssp EECCCC
T ss_pred ECCCCC
Confidence 887654
No 111
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=3.3e-19 Score=139.20 Aligned_cols=83 Identities=19% Similarity=0.340 Sum_probs=75.2
Q ss_pred CCCCcceEEEcCCCCCCCHHHHHHHHhccCCeEEEEEeecCCCCCcceEEEEEeCChHHHHHHHHhcC--CeeeCCeEEE
Q 021295 52 KDFKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGN--KLELAGAQVE 129 (314)
Q Consensus 52 ~~~~~~~l~V~nLp~~~~e~~l~~~F~~~G~v~~v~i~~~~~~g~~rG~afV~F~~~~~a~~a~~~l~--~~~~~gr~l~ 129 (314)
...+.++|||+|||++++|++|+++|++||+|++|.|+++ |+||||+|++.++|++||+.|+ ...|.+++|+
T Consensus 27 ~~~ps~~LfVgNLp~~vte~dL~~lF~~fG~V~~v~i~~~------kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~Gr~l~ 100 (119)
T 2ad9_A 27 AGVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG------KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIY 100 (119)
T ss_dssp CSSCCSEEEEESCCTTCCHHHHHHHHTTTSCCCEEEEEGG------GTEEEEECSCHHHHHHHHHHHHHHCCCBTTBCCE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeCC------CCEEEEEECCHHHHHHHHHHhccCCceECCeEEE
Confidence 4456789999999999999999999999999999999975 7899999999999999999886 4689999999
Q ss_pred EeecCCCCCCC
Q 021295 130 VKKAEPKKPNL 140 (314)
Q Consensus 130 V~~a~~~~~~~ 140 (314)
|++|++++...
T Consensus 101 V~~a~~k~~~~ 111 (119)
T 2ad9_A 101 IQFSNHKELKT 111 (119)
T ss_dssp EEECSSSSCCC
T ss_pred EEEccCCCCCc
Confidence 99999876654
No 112
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.79 E-value=5.5e-19 Score=134.41 Aligned_cols=85 Identities=27% Similarity=0.485 Sum_probs=77.9
Q ss_pred CCCCCcceEEEcCCCCCCCHHHHHHHHhccCCeEEEEEeecCCCCCcceEEEEEeCChHHHHHHHHhcCCeeeCCeEEEE
Q 021295 51 SKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEV 130 (314)
Q Consensus 51 ~~~~~~~~l~V~nLp~~~~e~~l~~~F~~~G~v~~v~i~~~~~~g~~rG~afV~F~~~~~a~~a~~~l~~~~~~gr~l~V 130 (314)
....+.++|||.|||++++|++|+++|++| ..|.|+.++.++++++||||+|+++++|++||+.||+..|.+++|+|
T Consensus 10 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~---~~~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V 86 (102)
T 2fc8_A 10 ARSQPSKTLFVKGLSEDTTEETLKESFDGS---VRARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTL 86 (102)
T ss_dssp SSSCCCSSEEEECCCTTCCHHHHHHTSTTC---SEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCCCCEEEEeCCCCccCHHHHHHHhcCC---eEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEE
Confidence 455678999999999999999999999976 47889999889999999999999999999999999999999999999
Q ss_pred eecCCCCC
Q 021295 131 KKAEPKKP 138 (314)
Q Consensus 131 ~~a~~~~~ 138 (314)
++++++..
T Consensus 87 ~~a~~~~~ 94 (102)
T 2fc8_A 87 DWAKPKGE 94 (102)
T ss_dssp EECCCCCS
T ss_pred EEecCCCC
Confidence 99987654
No 113
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=1.1e-19 Score=141.47 Aligned_cols=89 Identities=22% Similarity=0.299 Sum_probs=76.9
Q ss_pred CCCCcceEEEcCCCCCCCHHHHHHHHhccCCeEEEEEeecCCCCCcceEEEEEeCChHHHHHHHHhcCCeeeCCeEEEEe
Q 021295 52 KDFKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVK 131 (314)
Q Consensus 52 ~~~~~~~l~V~nLp~~~~e~~l~~~F~~~G~v~~v~i~~~~~~g~~rG~afV~F~~~~~a~~a~~~l~~~~~~gr~l~V~ 131 (314)
...+.++|||.|||+++++++|+++|++||.|+.|.+..+..++++++||||+|+++++|++||+.||+..|.+++|+|+
T Consensus 21 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~ 100 (115)
T 2cpx_A 21 PGEPNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMMTGRMRGQAFITFPNKEIAWQALHLVNGYKLYGKILVIE 100 (115)
T ss_dssp CCSCCSEEEEECCCTTCCHHHHHHHTHHHHHSSSSCCEEEEECSSSCSEEEEECSSHHHHHHHHHHSTTCBCSSCBCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCccceEEEEEcCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEE
Confidence 44567899999999999999999999999998544333333377899999999999999999999999999999999999
Q ss_pred ecCCCCCCC
Q 021295 132 KAEPKKPNL 140 (314)
Q Consensus 132 ~a~~~~~~~ 140 (314)
++.++....
T Consensus 101 ~a~~~~~~~ 109 (115)
T 2cpx_A 101 FGKNKKQRS 109 (115)
T ss_dssp ECCCCSCCC
T ss_pred EccCCCCCC
Confidence 999876544
No 114
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.79 E-value=1.4e-19 Score=129.75 Aligned_cols=75 Identities=41% Similarity=0.729 Sum_probs=72.2
Q ss_pred eEEEcCCCCCCCHHHHHHHHhccCCeEEEEEeecCCCCCcceEEEEEeCChHHHHHHHHhcCCeeeCCeEEEEeec
Q 021295 58 KIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVKKA 133 (314)
Q Consensus 58 ~l~V~nLp~~~~e~~l~~~F~~~G~v~~v~i~~~~~~g~~rG~afV~F~~~~~a~~a~~~l~~~~~~gr~l~V~~a 133 (314)
+|||+|||+++++++|+++|++||+|++|.|+.++.++++++||||+|+++++|++|++ ||+..|.+++|+|++|
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~-~~~~~~~g~~l~v~~A 75 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE-IHFHEINNKMVECKKA 75 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHTTSCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHS-SSCCCSSSCCCEEECC
T ss_pred CEEEecCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHH-CCCCEECCEEEEEEeC
Confidence 59999999999999999999999999999999999899999999999999999999998 8999999999999875
No 115
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.79 E-value=8.3e-19 Score=130.39 Aligned_cols=79 Identities=25% Similarity=0.577 Sum_probs=73.5
Q ss_pred CCCcceEEEcCCCCCCCHHHHHHHHhccCCeEEEEEeecCCCCCcceEEEEEeCChHHHHHHHHhcCCeeeCCeEEEEee
Q 021295 53 DFKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVKK 132 (314)
Q Consensus 53 ~~~~~~l~V~nLp~~~~e~~l~~~F~~~G~v~~v~i~~~~~~g~~rG~afV~F~~~~~a~~a~~~l~~~~~~gr~l~V~~ 132 (314)
..+.++|||+|||+++++++|+++|++||+|++|+|+ ++||||+|+++++|++||+.||+..|.+++|+|++
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 76 (90)
T 2dnq_A 5 SSGMVKLFIGNLPREATEQEIRSLFEQYGKVLECDII--------KNYGFVHIEDKTAAEDAIRNLHHYKLHGVNINVEA 76 (90)
T ss_dssp SSCCEEEEEESCCSSCCHHHHHHHHHTSSCEEEEEEE--------TTEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEEC
T ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEE--------CCEEEEEECCHHHHHHHHHHhcCCccCCcEEEEEE
Confidence 4567899999999999999999999999999999997 56999999999999999999999999999999999
Q ss_pred cCCCCCC
Q 021295 133 AEPKKPN 139 (314)
Q Consensus 133 a~~~~~~ 139 (314)
+.++...
T Consensus 77 a~~~~~~ 83 (90)
T 2dnq_A 77 SKNKSKA 83 (90)
T ss_dssp SSCCCCC
T ss_pred CCCCCCC
Confidence 9887554
No 116
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.79 E-value=1.4e-19 Score=130.35 Aligned_cols=76 Identities=41% Similarity=0.745 Sum_probs=73.4
Q ss_pred ceEEEcCCCCCCCHHHHHHHHhccCCeEEEEEeecCCCCCcceEEEEEeCChHHHHHHHHhcCCeeeCCeEEEEeec
Q 021295 57 KKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVKKA 133 (314)
Q Consensus 57 ~~l~V~nLp~~~~e~~l~~~F~~~G~v~~v~i~~~~~~g~~rG~afV~F~~~~~a~~a~~~l~~~~~~gr~l~V~~a 133 (314)
++|||+|||+++++++|+++|++||+|++|.|++++.++++++||||+|+++++|++|++.++ ..|++++|+|++|
T Consensus 1 ~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~-~~~~g~~l~v~~a 76 (77)
T 1uaw_A 1 CKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR-HELDSKTIDPKVA 76 (77)
T ss_dssp CCEEEESCCSSCCSHHHHHHHTTTSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTT-CCCSSCCCEEEEC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCC-CccCCEEEEEEec
Confidence 479999999999999999999999999999999999999999999999999999999999999 9999999999987
No 117
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=2.4e-19 Score=139.49 Aligned_cols=84 Identities=13% Similarity=0.183 Sum_probs=78.8
Q ss_pred CCCCcceEEEcCCCCCCCHHHHHHHHhccCCe-EEEEEeecCCCCCcceEEEEEeCChHHHHHHHHhcCCeeeCCeEEEE
Q 021295 52 KDFKTKKIFVGGIPSSVNEDEFKDFFMQFGDV-QEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEV 130 (314)
Q Consensus 52 ~~~~~~~l~V~nLp~~~~e~~l~~~F~~~G~v-~~v~i~~~~~~g~~rG~afV~F~~~~~a~~a~~~l~~~~~~gr~l~V 130 (314)
.+.+.++|||+|||++++|++|+++|++|+.| +.|+|+.|+ ++++++||||+|+++++|++||+. |...|.+++|+|
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al~~-~~~~~~gr~i~v 88 (114)
T 2cpy_A 11 VNSAKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDN-NGQGLGQALVQFKNEDDARKSERL-HRKKLNGREAFV 88 (114)
T ss_dssp CCSCCCEEEEESCCTTSCHHHHHHHTTTSCCCSTTEEECCCT-TSSCSSCEEEECSSHHHHHHHGGG-CSEEETTEEEEE
T ss_pred CCCCccEEEEeCcCCcCCHHHHHHHHHhCCCcCCeEEEEECC-CCCcceEEEEEECCHHHHHHHHHh-CCCccCCeEEEE
Confidence 44567899999999999999999999999999 899999998 999999999999999999999998 999999999999
Q ss_pred eecCCCC
Q 021295 131 KKAEPKK 137 (314)
Q Consensus 131 ~~a~~~~ 137 (314)
.++.++.
T Consensus 89 ~~a~~~~ 95 (114)
T 2cpy_A 89 HVVTLED 95 (114)
T ss_dssp EEECHHH
T ss_pred EECCHHH
Confidence 9998765
No 118
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=7e-20 Score=134.65 Aligned_cols=81 Identities=12% Similarity=0.388 Sum_probs=76.1
Q ss_pred CCcceEEEcCCCCCCCHHHHHHHHhccCCeEEEEEeecCCCCCcceEEEEEeCChHHHHHHHHhcCCeeeCCeEEEEeec
Q 021295 54 FKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVKKA 133 (314)
Q Consensus 54 ~~~~~l~V~nLp~~~~e~~l~~~F~~~G~v~~v~i~~~~~~g~~rG~afV~F~~~~~a~~a~~~l~~~~~~gr~l~V~~a 133 (314)
.+.++|||.|||+++++++|+++|++||+|+.|.|+.++.++++++||||+|+++++|++||+.||+..|.++.|+|+++
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~~~ 82 (85)
T 1x4e_A 3 SGSSGLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQAQMAKQSGP 82 (85)
T ss_dssp CCCCEEEEESCCTTCCHHHHHTTSTTTSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTCCEESCCSSCC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcCCeEeeEEEeecCC
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999998888665
Q ss_pred C
Q 021295 134 E 134 (314)
Q Consensus 134 ~ 134 (314)
.
T Consensus 83 ~ 83 (85)
T 1x4e_A 83 S 83 (85)
T ss_dssp C
T ss_pred C
Confidence 4
No 119
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.78 E-value=4.5e-19 Score=136.71 Aligned_cols=79 Identities=29% Similarity=0.483 Sum_probs=73.7
Q ss_pred CcceEEEcCCCCCCCHHHHHHHHhccCCeEEEEEeecCCCCCcceEEEEEeCChHHHHHHHHhcCCeeeCCeEEEEeecC
Q 021295 55 KTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVKKAE 134 (314)
Q Consensus 55 ~~~~l~V~nLp~~~~e~~l~~~F~~~G~v~~v~i~~~~~~g~~rG~afV~F~~~~~a~~a~~~l~~~~~~gr~l~V~~a~ 134 (314)
+..+|||+|||++++|+||+++|++| .|++|+|+.|+. ++++|||||+|+++++|++|| .+|...|.++.|+|..+.
T Consensus 15 ~~~~v~V~nLp~~~te~dl~~~F~~~-~v~~v~i~~d~~-g~~~G~afV~F~~~~~a~~Al-~~~~~~~~gr~i~V~~a~ 91 (109)
T 2dnn_A 15 DDLYVSVHGMPFSAMENDVRDFFHGL-RVDAVHLLKDHV-GRNNGNGLVKFLSPQDTFEAL-KRNRMLMIQRYVEVSPAT 91 (109)
T ss_dssp HHHEEEEECCCSSCCHHHHHHHTTTS-CCCEEEECCCTT-CCCCSEEEEECSSHHHHHHHH-HTTTEEETTEEEEEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHhccC-CeeEEEEEECCC-CCCCeEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEECC
Confidence 45799999999999999999999999 999999999975 999999999999999999999 579999999999999887
Q ss_pred CC
Q 021295 135 PK 136 (314)
Q Consensus 135 ~~ 136 (314)
++
T Consensus 92 ~~ 93 (109)
T 2dnn_A 92 ER 93 (109)
T ss_dssp HH
T ss_pred cc
Confidence 54
No 120
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.78 E-value=1.8e-18 Score=129.12 Aligned_cols=82 Identities=20% Similarity=0.414 Sum_probs=74.8
Q ss_pred CCCCCcceEEEcCCCCCCCHHHHHHHHhccCCeEEEEEeecCCCCCcceEEEEEeCChHHHHHHHHhcCCeeeCCeEEEE
Q 021295 51 SKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEV 130 (314)
Q Consensus 51 ~~~~~~~~l~V~nLp~~~~e~~l~~~F~~~G~v~~v~i~~~~~~g~~rG~afV~F~~~~~a~~a~~~l~~~~~~gr~l~V 130 (314)
....+.++|||+|||+++++++|+++|++||+|++|.|+++ ||||+|+++++|++||+.||+..|.+++|+|
T Consensus 5 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~~~~~--------~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 76 (92)
T 2dgt_A 5 SSGKASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIVKD--------YAFVHMERAEDAVEAIRGLDNTEFQGKRMHV 76 (92)
T ss_dssp CCCCSSEEEEEESCCSSCCHHHHHHHHHTTSCCCEEEECSS--------EEEEEESCHHHHHHHHHHHTTEEETTEEEEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEECC--------EEEEEECCHHHHHHHHHHhCCCeeCCcEEEE
Confidence 34567899999999999999999999999999999999844 9999999999999999999999999999999
Q ss_pred eecCCCCCCC
Q 021295 131 KKAEPKKPNL 140 (314)
Q Consensus 131 ~~a~~~~~~~ 140 (314)
+++.++....
T Consensus 77 ~~a~~~~~~~ 86 (92)
T 2dgt_A 77 QLSTSRLRTA 86 (92)
T ss_dssp EESSCCCSCC
T ss_pred EEccCCCCCC
Confidence 9998875543
No 121
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.78 E-value=7.3e-19 Score=132.74 Aligned_cols=81 Identities=15% Similarity=0.226 Sum_probs=72.7
Q ss_pred CCCCcceEEEcCCCCCCCHHHHHHHHhccCCeEEEEEeecCCCCCcceEEEEEeCChHHHHHHHHhcCCe--eeCCeEEE
Q 021295 52 KDFKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKL--ELAGAQVE 129 (314)
Q Consensus 52 ~~~~~~~l~V~nLp~~~~e~~l~~~F~~~G~v~~v~i~~~~~~g~~rG~afV~F~~~~~a~~a~~~l~~~--~~~gr~l~ 129 (314)
...++++|||+|||++++|++|+++|++||+|++|.|++ .|+||||+|++.++|++|++.|+.. .|.+++|.
T Consensus 17 ~~~ps~~l~V~NLp~~~te~~L~~lF~~fG~V~~v~i~~------~kg~AFVef~~~~~A~~Av~~ln~~~~~i~Gr~i~ 90 (100)
T 3r27_A 17 KTPASPVVHIRGLIDGVVEADLVEALQEFGPISYVVVMP------KKRQALVEFEDVLGACNAVNYAADNQIYIAGHPAF 90 (100)
T ss_dssp CCCCCSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEET------TTTEEEEEESSHHHHHHHHHHHHHSCEEETTEEEE
T ss_pred cCCCCcEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEEc------CCCEEEEEECCHHHHHHHHHHhcCCCceeCCcEEE
Confidence 445788999999999999999999999999999999985 3789999999999999999988764 58899999
Q ss_pred EeecCCCCC
Q 021295 130 VKKAEPKKP 138 (314)
Q Consensus 130 V~~a~~~~~ 138 (314)
|++++.++.
T Consensus 91 V~~S~~k~l 99 (100)
T 3r27_A 91 VNYSTSQKI 99 (100)
T ss_dssp EEECSCSCC
T ss_pred EEecccccc
Confidence 999987653
No 122
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.78 E-value=1.5e-18 Score=132.75 Aligned_cols=83 Identities=17% Similarity=0.221 Sum_probs=73.9
Q ss_pred CCCCcceEEEcCCCCCCCHHHHHHHHhccCCeEEEEEeecCCCCCcceEEEEEeCChHHHHHHHHhcC--CeeeCCeEEE
Q 021295 52 KDFKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGN--KLELAGAQVE 129 (314)
Q Consensus 52 ~~~~~~~l~V~nLp~~~~e~~l~~~F~~~G~v~~v~i~~~~~~g~~rG~afV~F~~~~~a~~a~~~l~--~~~~~gr~l~ 129 (314)
...++++|||+|||++++|++|+++|++||+|++|.|+++ |+||||+|+++++|++||+.|+ .+.|.+++|.
T Consensus 11 ~~~p~~~l~V~nLp~~~te~~L~~~F~~fG~V~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~i~Gr~l~ 84 (104)
T 1wex_A 11 KVSVSPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPF------KRQALVEFENIDSAKECVTFAADVPVYIAGQQAF 84 (104)
T ss_dssp CCCCCSEEEEESCCSSCCHHHHHHHHTTTSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCCBSSSSBCE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEECC------CCEEEEEECCHHHHHHHHHHhccCCceECCEEEE
Confidence 4456789999999999999999999999999999999864 7899999999999999999874 4569999999
Q ss_pred EeecCCCCCCC
Q 021295 130 VKKAEPKKPNL 140 (314)
Q Consensus 130 V~~a~~~~~~~ 140 (314)
|++++.+....
T Consensus 85 V~~a~~~~~~~ 95 (104)
T 1wex_A 85 FNYSTSKRITR 95 (104)
T ss_dssp EEECSSSSCCC
T ss_pred EEEccCccccC
Confidence 99999876554
No 123
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.78 E-value=1.3e-19 Score=137.57 Aligned_cols=85 Identities=22% Similarity=0.446 Sum_probs=75.7
Q ss_pred CCCCCcceEEEcCCCCCCCHHHHHHHHhccCCeEEEEEeecC-CCCCcceEEEEEeCChHHHHHHHHhcCCeeeCCeEEE
Q 021295 51 SKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDH-STSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVE 129 (314)
Q Consensus 51 ~~~~~~~~l~V~nLp~~~~e~~l~~~F~~~G~v~~v~i~~~~-~~g~~rG~afV~F~~~~~a~~a~~~l~~~~~~gr~l~ 129 (314)
......++|||+|||+++++++|+++|++|| |++|+|++++ .++++++||||+|++.++|++|| .||+..|.++.|+
T Consensus 14 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai-~l~g~~~~g~~l~ 91 (100)
T 2j76_E 14 LPKSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNRRIR 91 (100)
T ss_dssp ------CEEEESCCSSCCSSSHHHHHSCSSC-EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHH-HTTTCCBTTBCCC
T ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHH-hcCCCEECCeEEE
Confidence 3456789999999999999999999999999 9999999998 68999999999999999999999 8999999999999
Q ss_pred EeecCCCC
Q 021295 130 VKKAEPKK 137 (314)
Q Consensus 130 V~~a~~~~ 137 (314)
|+++.++.
T Consensus 92 V~~a~~~~ 99 (100)
T 2j76_E 92 VDVADQAQ 99 (100)
T ss_dssp CEECCCSC
T ss_pred EEeccCCC
Confidence 99998754
No 124
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.78 E-value=4.9e-19 Score=129.40 Aligned_cols=74 Identities=11% Similarity=0.234 Sum_probs=70.2
Q ss_pred CcceEEEcCCCCCCCHHHHHHHHhccCCeEEEEEeecCCCCCcceEEEEEeCChHHHHHHHHhcCCeeeCCeEEEEeecC
Q 021295 55 KTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVKKAE 134 (314)
Q Consensus 55 ~~~~l~V~nLp~~~~e~~l~~~F~~~G~v~~v~i~~~~~~g~~rG~afV~F~~~~~a~~a~~~l~~~~~~gr~l~V~~a~ 134 (314)
.+..|||+||++.+||++|+++|.+||+|++++|+. +||||||+|.++++|++|++.||++.+.+++|+|+.|.
T Consensus 6 ~~~wL~VgNL~~~~te~~L~~lF~q~G~V~~~~l~~------~kGfaFVey~~~~eA~~Ai~~Ln~~~l~gr~I~V~~A~ 79 (89)
T 2wbr_A 6 GSSWLLLKNLTAQIDGPTLRTLCMQHGPLVSFHPYL------NQGIALCKYTTREEANKAQMALNNCVLANTTIFAESPS 79 (89)
T ss_dssp CCCEEEEECCCTTCCCHHHHHHHHHHSCEEEEEEET------TTTEEEEEESSHHHHHHHHHHHTTEEETTEEEEEECCC
T ss_pred ccceEEEeCCCccCCHHHHHHHHHhhCCEEEEEEcC------CCcEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEECC
Confidence 367899999999999999999999999999999975 58999999999999999999999999999999999985
No 125
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.78 E-value=7.8e-20 Score=135.89 Aligned_cols=83 Identities=31% Similarity=0.627 Sum_probs=74.4
Q ss_pred ceEEEcCCCCCCCHHHHHHHHhccCCeEEEEEeecCCCCCcceEEEEEeCChHHHHHHHHhcCCeeeCCeEEEEeecCCC
Q 021295 57 KKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVKKAEPK 136 (314)
Q Consensus 57 ~~l~V~nLp~~~~e~~l~~~F~~~G~v~~v~i~~~~~~g~~rG~afV~F~~~~~a~~a~~~l~~~~~~gr~l~V~~a~~~ 136 (314)
++|||+|||+++++++|+++|++||+|++|.|++++.++++++||||+|++++ |++|++.||+..|.+++|+|++|.+.
T Consensus 2 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~~g~~l~V~~a~~~ 80 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTDFMGRTIRVTEANPK 80 (90)
T ss_dssp EEEEEEEECTTSSHHHHTTTHHHHTCCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCCSSSSCSEEEC---
T ss_pred cEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCEECCeEEEEEEcCCC
Confidence 58999999999999999999999999999999999999999999999999999 99999999999999999999999887
Q ss_pred CCCC
Q 021295 137 KPNL 140 (314)
Q Consensus 137 ~~~~ 140 (314)
....
T Consensus 81 ~~~~ 84 (90)
T 2ki2_A 81 KSLE 84 (90)
T ss_dssp ----
T ss_pred CCCC
Confidence 6543
No 126
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.78 E-value=1.2e-18 Score=133.56 Aligned_cols=85 Identities=14% Similarity=0.258 Sum_probs=77.6
Q ss_pred CCCCcceEEEcCCCCCC------CHHHHHHHHhccCCeEEEEEeecCCCCCcceEEEEEeCChHHHHHHHHhcCCeeeCC
Q 021295 52 KDFKTKKIFVGGIPSSV------NEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAG 125 (314)
Q Consensus 52 ~~~~~~~l~V~nLp~~~------~e~~l~~~F~~~G~v~~v~i~~~~~~g~~rG~afV~F~~~~~a~~a~~~l~~~~~~g 125 (314)
.+...++|||+|||+++ ++++|+++|++||+|++|.|+ +.++++++||||+|+++++|++||+.||+..|.+
T Consensus 11 ~~~~~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~~v~i~--~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~~~g 88 (105)
T 2nlw_A 11 ADGIDSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYP--EEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDK 88 (105)
T ss_dssp CCSCCSEEEEESCCCCCTTTTTHHHHHHHHHHGGGSCEEEEECC--CBTTBSCCEEEEEECSSSHHHHHHHHCSSEECST
T ss_pred CCCCCCEEEEeCCCcchhhhhHHHHHHHHHHHhcCCCEEEEEee--CCCCCeeeEEEEEECCHHHHHHHHHHhCCcccCC
Confidence 34457899999999999 789999999999999999998 4688999999999999999999999999999999
Q ss_pred e-EEEEeecCCCCC
Q 021295 126 A-QVEVKKAEPKKP 138 (314)
Q Consensus 126 r-~l~V~~a~~~~~ 138 (314)
+ +|+|+++.+.+.
T Consensus 89 ~~~l~V~~a~~~~k 102 (105)
T 2nlw_A 89 QHTFRVNLFTDFDK 102 (105)
T ss_dssp TCEEEEECSCCCCC
T ss_pred CceEEEEEcchHhh
Confidence 8 999999987654
No 127
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.78 E-value=1.3e-18 Score=139.73 Aligned_cols=82 Identities=28% Similarity=0.545 Sum_probs=77.9
Q ss_pred CCCCcceEEEcCCCCCCCHHHHHHHHhccCCeEEEEEeecCCCCCcceEEEEEeCChHHHHHHHHhcCCeeeCCeEEEEe
Q 021295 52 KDFKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVK 131 (314)
Q Consensus 52 ~~~~~~~l~V~nLp~~~~e~~l~~~F~~~G~v~~v~i~~~~~~g~~rG~afV~F~~~~~a~~a~~~l~~~~~~gr~l~V~ 131 (314)
...+.++|||+|||+++++++|+++|++||+|++|+|++++.++++++||||+|+++++|++||+.||+..|.+++|+|+
T Consensus 59 ~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 138 (140)
T 2ku7_A 59 SATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVN 138 (140)
T ss_dssp SCSSCCEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTEEEETTEEEEEE
T ss_pred CCCCCcEEEEEeCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 45678999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred ec
Q 021295 132 KA 133 (314)
Q Consensus 132 ~a 133 (314)
+|
T Consensus 139 ~A 140 (140)
T 2ku7_A 139 LA 140 (140)
T ss_dssp C-
T ss_pred eC
Confidence 75
No 128
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=8.8e-19 Score=136.04 Aligned_cols=84 Identities=21% Similarity=0.482 Sum_probs=77.8
Q ss_pred CCCCcceEEEcCCCCCCCHHHHHHHHhccCCeEEEEEeecCCCCCcceEEEEEeCChHHHHHHHHhcCCeee--------
Q 021295 52 KDFKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLEL-------- 123 (314)
Q Consensus 52 ~~~~~~~l~V~nLp~~~~e~~l~~~F~~~G~v~~v~i~~~~~~g~~rG~afV~F~~~~~a~~a~~~l~~~~~-------- 123 (314)
.+.+.++|||.|||+++++++|+++|++||+|+.|+|+.++ ++++++||||+|+++++|++||+.||+..|
T Consensus 21 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~~~~~~ 99 (114)
T 1x5o_A 21 QEQDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDS-SGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSA 99 (114)
T ss_dssp CCCCTTEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEEECS-SSCEEEEEEEEESCHHHHHHHHHHHBTCCCCCCTTSCC
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CCCcceEEEEEECCHHHHHHHHHHhCCCEEcCCccccC
Confidence 45567899999999999999999999999999999999998 899999999999999999999999999998
Q ss_pred CCeEEEEeecCCC
Q 021295 124 AGAQVEVKKAEPK 136 (314)
Q Consensus 124 ~gr~l~V~~a~~~ 136 (314)
.+++|.|++|.+.
T Consensus 100 ~~~~l~v~~a~p~ 112 (114)
T 1x5o_A 100 PTEPLLCKFSGPS 112 (114)
T ss_dssp CSSCBEEEECCCS
T ss_pred CCCceeEEccCCC
Confidence 5788999988754
No 129
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=6.5e-19 Score=135.90 Aligned_cols=85 Identities=26% Similarity=0.518 Sum_probs=78.4
Q ss_pred CCCCCcceEEEcCCCCCCCHHHHHHHHhccCCeEEEEEeecCCCCCcceEEEEEeCChHHHHHHHHhcCCeeeCCeEEEE
Q 021295 51 SKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEV 130 (314)
Q Consensus 51 ~~~~~~~~l~V~nLp~~~~e~~l~~~F~~~G~v~~v~i~~~~~~g~~rG~afV~F~~~~~a~~a~~~l~~~~~~gr~l~V 130 (314)
....+.++|||+|||+++++++|+++|++||+|++|+|++++. ++++||||+|++.++|++|++.||+..|.+++|+|
T Consensus 24 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~--~~kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V 101 (109)
T 2err_A 24 ENKSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNER--GSKGFGFVTFENSADADRAREKLHGTVVEGRKIEV 101 (109)
T ss_dssp SCTTCCCEEEEESCCTTCCHHHHHHHGGGTCCCSCEEECCBTT--BCTTEEEEECCCSHHHHHHHHHHTTCEETTEECEE
T ss_pred cCCCCCCEEEEECCCCcCCHHHHHHHHHhcCCEEEEEEEECCC--CCceEEEEEECCHHHHHHHHHHcCCCEECCEEEEE
Confidence 3556789999999999999999999999999999999998853 48999999999999999999999999999999999
Q ss_pred eecCCCC
Q 021295 131 KKAEPKK 137 (314)
Q Consensus 131 ~~a~~~~ 137 (314)
++++++.
T Consensus 102 ~~a~~~~ 108 (109)
T 2err_A 102 NNATARV 108 (109)
T ss_dssp EECCCSC
T ss_pred EECCCCc
Confidence 9998763
No 130
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.78 E-value=5.8e-19 Score=138.21 Aligned_cols=84 Identities=17% Similarity=0.267 Sum_probs=77.7
Q ss_pred CCCCcceEEEcCCCCCCCHHHHHHHHhccCC---eEEEEEeecCCCCCcceEEEEEeCChHHHHHHHHhcCCeeeCCeEE
Q 021295 52 KDFKTKKIFVGGIPSSVNEDEFKDFFMQFGD---VQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQV 128 (314)
Q Consensus 52 ~~~~~~~l~V~nLp~~~~e~~l~~~F~~~G~---v~~v~i~~~~~~g~~rG~afV~F~~~~~a~~a~~~l~~~~~~gr~l 128 (314)
...+.++|||+|||+++||++|+++|++|++ |+.|+|+.++. ++++|||||+|+++++|++||+ ||+..|.++.|
T Consensus 13 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~~~~v~~v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i 90 (118)
T 2db1_A 13 EGGEGYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTRE-GRQSGEAFVELESEDDVKLALK-KDRESMGHRYI 90 (118)
T ss_dssp CBCCCCEEEEESCCTTCCHHHHHHHTTTSCBTTGGGGEEEEECSS-SCEEEEEEEEBSSHHHHHHHGG-GTTEEETTEEE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHHcCCccCceeEEEEECCC-CCCCeEEEEEECCHHHHHHHHh-cCCCeECCeEE
Confidence 3456789999999999999999999999999 89999999976 9999999999999999999999 89999999999
Q ss_pred EEeecCCCC
Q 021295 129 EVKKAEPKK 137 (314)
Q Consensus 129 ~V~~a~~~~ 137 (314)
+|.++..++
T Consensus 91 ~V~~a~~~~ 99 (118)
T 2db1_A 91 EVFKSHRTE 99 (118)
T ss_dssp EEEEECHHH
T ss_pred EEEECCHHH
Confidence 999987654
No 131
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.78 E-value=1.5e-18 Score=130.82 Aligned_cols=80 Identities=20% Similarity=0.368 Sum_probs=73.9
Q ss_pred CCCCcceEEEcCCCCCCCHHHHHHHHhccCCeEEEEEeecCCCCCcceEEEEEeCChHHHHHHHHhcCCeeeC--CeEEE
Q 021295 52 KDFKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELA--GAQVE 129 (314)
Q Consensus 52 ~~~~~~~l~V~nLp~~~~e~~l~~~F~~~G~v~~v~i~~~~~~g~~rG~afV~F~~~~~a~~a~~~l~~~~~~--gr~l~ 129 (314)
...++++|||.|||++++|++|+++|++||+|++|+|+++ ++||||+|+++++|++||+.||+..|. +++|+
T Consensus 13 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~~~~~------~g~afV~f~~~~~A~~A~~~l~g~~~~~~g~~l~ 86 (97)
T 1why_A 13 KANPTTRLWVGGLGPNTSLAALAREFDRFGSIRTIDHVKG------DSFAYIQYESLDAAQAACAKMRGFPLGGPDRRLR 86 (97)
T ss_dssp CCCCCSCEEEECCCSSCCHHHHHHHHHTTSCEEEEEECSS------SCCEEEEESSHHHHHHHHHHHTTCBCSSSSCBCE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeCC------CCEEEEEECCHHHHHHHHHHHCCCEeCCCCcEEE
Confidence 4456789999999999999999999999999999999854 679999999999999999999999999 99999
Q ss_pred EeecCCCC
Q 021295 130 VKKAEPKK 137 (314)
Q Consensus 130 V~~a~~~~ 137 (314)
|++++++.
T Consensus 87 V~~a~~~~ 94 (97)
T 1why_A 87 VDFAKSGP 94 (97)
T ss_dssp EEECCCCC
T ss_pred EEECCCCC
Confidence 99998764
No 132
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.77 E-value=1.4e-18 Score=134.21 Aligned_cols=97 Identities=18% Similarity=0.454 Sum_probs=79.6
Q ss_pred CCcEEEEeecCCCCCCCCCCCCcceEEEcCCCCC-CCHHHHHHHHhccCCeEEEEEeecCCCCCcceEEEEEeCChHHHH
Q 021295 34 NGKQVEIKRTIPKGAVGSKDFKTKKIFVGGIPSS-VNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVD 112 (314)
Q Consensus 34 ~g~~i~v~~~~~~~~~~~~~~~~~~l~V~nLp~~-~~e~~l~~~F~~~G~v~~v~i~~~~~~g~~rG~afV~F~~~~~a~ 112 (314)
.+..|.++.+.+... .......++|||.|||++ +++++|+++|++||+|++|.| +++||||+|+++++|+
T Consensus 6 ~g~~~~~~~s~~~~~-~~~~~~~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i--------~~g~afV~f~~~~~A~ 76 (110)
T 1wf1_A 6 SGMSLKLQASNVTNK-NDPKSINSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSV--------HKGYAFVQYSNERHAR 76 (110)
T ss_dssp CSCCCCCCCCCSCCS-CCCTTCSSEEEECSCCCSSCCHHHHHHHHGGGSCCSEEEE--------ETTEEEEECSSSHHHH
T ss_pred CCcccccccCCCCCC-CCCCCCCcEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEE--------eCCEEEEEECCHHHHH
Confidence 344455554443322 223445689999999999 999999999999999999998 4789999999999999
Q ss_pred HHHHhcCCeeeCCeEEEEeecCCCCCC
Q 021295 113 DLLAKGNKLELAGAQVEVKKAEPKKPN 139 (314)
Q Consensus 113 ~a~~~l~~~~~~gr~l~V~~a~~~~~~ 139 (314)
+||+.||+..|++++|+|+++.+.+..
T Consensus 77 ~A~~~l~g~~~~g~~l~V~~a~~~~~~ 103 (110)
T 1wf1_A 77 AAVLGENGRVLAGQTLDINMAGEPKPD 103 (110)
T ss_dssp HHHHHHTTCEETTEECCEEESCCCCSC
T ss_pred HHHHHcCCCEECCeEEEEEECCCCCCC
Confidence 999999999999999999999865443
No 133
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=1.9e-18 Score=133.10 Aligned_cols=83 Identities=19% Similarity=0.419 Sum_probs=76.2
Q ss_pred CCCCcceEEEcCCCCCCCHHHHHHHHhccCCeEEEEEeecCCCCCcceEEEEEeCChHHHHHHHHhcCCeeeCCeEEEEe
Q 021295 52 KDFKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVK 131 (314)
Q Consensus 52 ~~~~~~~l~V~nLp~~~~e~~l~~~F~~~G~v~~v~i~~~~~~g~~rG~afV~F~~~~~a~~a~~~l~~~~~~gr~l~V~ 131 (314)
.....++|||+|||+++++++|+++|++||+|+.|+|+++ ++||||+|+++++|++||+.||+..|.+++|+|+
T Consensus 21 ~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~------~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 94 (109)
T 1x4g_A 21 SSPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPE------KGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCY 94 (109)
T ss_dssp SCSSCCEEEEECCSSCCCHHHHHHHHHHHSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeCC------CCEEEEEECCHHHHHHHHHHcCCCEECCcEEEEE
Confidence 3456789999999999999999999999999999999976 6899999999999999999999999999999999
Q ss_pred ecCCCCCCC
Q 021295 132 KAEPKKPNL 140 (314)
Q Consensus 132 ~a~~~~~~~ 140 (314)
+++++....
T Consensus 95 ~a~~~~~~~ 103 (109)
T 1x4g_A 95 WGKESPDMT 103 (109)
T ss_dssp CCCCCCSSC
T ss_pred ecCCCCCCC
Confidence 999876543
No 134
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.77 E-value=1.1e-19 Score=138.00 Aligned_cols=85 Identities=16% Similarity=0.351 Sum_probs=77.5
Q ss_pred CCCCcceEEEcCCCCCCCHHHHHHHHhccCCeEEEEEeecCCCCCcceEEEEEeCChHHHHHHHHhcCCeeeCCeEEEEe
Q 021295 52 KDFKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVK 131 (314)
Q Consensus 52 ~~~~~~~l~V~nLp~~~~e~~l~~~F~~~G~v~~v~i~~~~~~g~~rG~afV~F~~~~~a~~a~~~l~~~~~~gr~l~V~ 131 (314)
...+.++|||+|||+++++++|+++|++|++|+. .++.++.++++++||||+|+++++|++||+ ||+..|.+++|+|+
T Consensus 13 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~-~~~~~~~~g~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~V~ 90 (101)
T 1fj7_A 13 ESTTPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKLE 90 (101)
T ss_dssp TCSCSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGCCBTTBCCEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEecCCCCCcCcEEEEEECCHHHHHHHHh-cCCcEECCcEEEEE
Confidence 4456789999999999999999999999999988 677777788999999999999999999999 99999999999999
Q ss_pred ecCCCCC
Q 021295 132 KAEPKKP 138 (314)
Q Consensus 132 ~a~~~~~ 138 (314)
++.++..
T Consensus 91 ~a~~~~~ 97 (101)
T 1fj7_A 91 KPKGRDG 97 (101)
T ss_dssp CCSCCCC
T ss_pred EcCCCCC
Confidence 9987654
No 135
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=1.8e-19 Score=142.32 Aligned_cols=85 Identities=18% Similarity=0.305 Sum_probs=78.2
Q ss_pred CCCCcceEEEcCCCCCCCHHHHHHHHhccCCeEEEEEeecCCCCCcceEEEEEeCChHHHHHHHHhcCCeeeCCeEEEEe
Q 021295 52 KDFKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVK 131 (314)
Q Consensus 52 ~~~~~~~l~V~nLp~~~~e~~l~~~F~~~G~v~~v~i~~~~~~g~~rG~afV~F~~~~~a~~a~~~l~~~~~~gr~l~V~ 131 (314)
...+.++|||+|||++++|++|+++|++||+|+.+.++.+..+++++|||||+|+++++|++||+ ||+..|.++.|+|.
T Consensus 21 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~V~ 99 (124)
T 1wel_A 21 PHEAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALC-RHKQYMGNRFIQVH 99 (124)
T ss_dssp CCCCCCEEEEECCCTTCCHHHHHHHSCSSCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHT-SCSBCSTTSCBEEE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEECCCCCCCeEEEEEECCHHHHHHHHH-hCCCeECCcEEEEE
Confidence 44567899999999999999999999999999987777777899999999999999999999999 89999999999999
Q ss_pred ecCCCC
Q 021295 132 KAEPKK 137 (314)
Q Consensus 132 ~a~~~~ 137 (314)
++.++.
T Consensus 100 ~a~~~~ 105 (124)
T 1wel_A 100 PITKKG 105 (124)
T ss_dssp EECHHH
T ss_pred ECCHHH
Confidence 998754
No 136
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.77 E-value=2.5e-18 Score=127.82 Aligned_cols=79 Identities=24% Similarity=0.459 Sum_probs=73.2
Q ss_pred CCCCcceEEEcCCCCCCCHHHHHHHHhccCCeEEEEEeecCCCCCcceEEEEEeCChHHHHHHHHhcCCeeeCCeEEEEe
Q 021295 52 KDFKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVK 131 (314)
Q Consensus 52 ~~~~~~~l~V~nLp~~~~e~~l~~~F~~~G~v~~v~i~~~~~~g~~rG~afV~F~~~~~a~~a~~~l~~~~~~gr~l~V~ 131 (314)
+..+.++|||+|||+++++++|+++|++||+|++|+|+++ ||||+|+++++|++||+.||+..|.+++|+|+
T Consensus 5 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~~~--------~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 76 (90)
T 2dnp_A 5 SSGNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVVKD--------YAFVHMEKEADAKAAIAQLNGKEVKGKRINVE 76 (90)
T ss_dssp SSCCSCCEEEESCCTTCCHHHHHHHHHHHSCEEEEEECSS--------CEEEEESCHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHcCCCEEEEEEECC--------EEEEEECCHHHHHHHHHHhCCCEECCcEEEEE
Confidence 4556789999999999999999999999999999999844 99999999999999999999999999999999
Q ss_pred ecCCCCC
Q 021295 132 KAEPKKP 138 (314)
Q Consensus 132 ~a~~~~~ 138 (314)
++.++..
T Consensus 77 ~a~~~~~ 83 (90)
T 2dnp_A 77 LSTKGQK 83 (90)
T ss_dssp ESCCCCC
T ss_pred ECCCCCC
Confidence 9987644
No 137
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.77 E-value=1.8e-18 Score=130.93 Aligned_cols=82 Identities=27% Similarity=0.517 Sum_probs=75.4
Q ss_pred CCCCcceEEEcCCCCCCCHHHHHHHHhccCCeEEEEEeecCCCCCcceEEEEEeCChHHHHHHHHhcCCeeeCCeEEEEe
Q 021295 52 KDFKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVK 131 (314)
Q Consensus 52 ~~~~~~~l~V~nLp~~~~e~~l~~~F~~~G~v~~v~i~~~~~~g~~rG~afV~F~~~~~a~~a~~~l~~~~~~gr~l~V~ 131 (314)
...+.++|||.|||+++++++|+++|++||+|++|+|+++ ++||||+|+++++|++||+.||+..|.+++|+|+
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~~~------kg~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~ 84 (99)
T 2cpj_A 11 TFTQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKD------KGFGFIRLETRTLAEIAKVELDNMPLRGKQLRVR 84 (99)
T ss_dssp CCCCTTEEEEESCCTTCCHHHHHHHTSTTCCCSEEEEETT------TTEEEEECSSSHHHHHHHHHHTTCCBTTBCCEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEecC------CCEEEEEECCHHHHHHHHHHhCCCEeCCceEEEE
Confidence 4456789999999999999999999999999999999854 6899999999999999999999999999999999
Q ss_pred ecCCCCCC
Q 021295 132 KAEPKKPN 139 (314)
Q Consensus 132 ~a~~~~~~ 139 (314)
++.++...
T Consensus 85 ~a~~~~~~ 92 (99)
T 2cpj_A 85 FACHSASL 92 (99)
T ss_dssp ESSCCSCC
T ss_pred EcCCCCCC
Confidence 99886544
No 138
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.77 E-value=1.6e-18 Score=130.69 Aligned_cols=82 Identities=16% Similarity=0.293 Sum_probs=74.0
Q ss_pred CCCCcceEEEcCCCCCCCHHHHHHHHhccCCeEEEEEeecCCCCCcceEEEEEeCChHHHHHHHHhcCCeeeCCeEEEEe
Q 021295 52 KDFKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVK 131 (314)
Q Consensus 52 ~~~~~~~l~V~nLp~~~~e~~l~~~F~~~G~v~~v~i~~~~~~g~~rG~afV~F~~~~~a~~a~~~l~~~~~~gr~l~V~ 131 (314)
+....++|||+|||+++++++|+++|++||+|+ +.|+.+ ++++||||+|+++++|++||+.||+..|.+++|+|+
T Consensus 15 ~~~~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~-~~~~~~----~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 89 (97)
T 2e5j_A 15 GAPLAADVYVGNLPRDARVSDLKRALRELGSVP-LRLTWQ----GPRRRAFLHYPDSAAAQQAVSCLQGLRLGTDTLRVA 89 (97)
T ss_dssp SSCCCCEEEEECCCTTCCHHHHHHHHHHTTCCC-SEEEEE----TTTTEEEEECSSHHHHHHHHHHHTTCCSSSSCCEEE
T ss_pred CCCCCCEEEEeCCCCcCcHHHHHHHHHhcCCEE-EEEEcC----CCCcEEEEEECCHHHHHHHHHHhCCCEECCcEEEEE
Confidence 445678999999999999999999999999997 677654 578999999999999999999999999999999999
Q ss_pred ecCCCCC
Q 021295 132 KAEPKKP 138 (314)
Q Consensus 132 ~a~~~~~ 138 (314)
++.++++
T Consensus 90 ~a~~~~~ 96 (97)
T 2e5j_A 90 LARQQRD 96 (97)
T ss_dssp ECCCCCC
T ss_pred EcCCCCC
Confidence 9987653
No 139
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.76 E-value=1.6e-18 Score=133.99 Aligned_cols=79 Identities=18% Similarity=0.314 Sum_probs=71.9
Q ss_pred CCcceEEEcCCCCCCCHHHHHHHHhccC-CeEEEEEeecCCCCCcceEEEEEeCChHHHHHHHHhcCCeeeCCeEEEEee
Q 021295 54 FKTKKIFVGGIPSSVNEDEFKDFFMQFG-DVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVKK 132 (314)
Q Consensus 54 ~~~~~l~V~nLp~~~~e~~l~~~F~~~G-~v~~v~i~~~~~~g~~rG~afV~F~~~~~a~~a~~~l~~~~~~gr~l~V~~ 132 (314)
....+|||+|||++++|++|+++|++|| +|+.|+|+.+ +++|||||+|+++++|++||+.||+.+|.+++|+|++
T Consensus 26 ~~~~~l~VgnLp~~~te~dL~~~F~~~G~~v~~v~i~~~----~~rGfaFV~F~~~e~A~~Ai~~lng~~l~Gr~i~V~~ 101 (111)
T 2jvr_A 26 AKRYRITMKNLPEGCSWQDLKDLARENSLETTFSSVNTR----DFDGTGALEFPSEEILVEALERLNNIEFRGSVITVER 101 (111)
T ss_dssp CCCEEEEEECSSCCCCHHHHHHHHHHHTCCCSEEECSSC----SSSCCEEEEESSHHHHHHHHHHTTTEEETTEEEEEEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHhCCeeEEEEEEcC----CCCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEE
Confidence 3467999999999999999999999999 8999998643 4789999999999999999999999999999999999
Q ss_pred cCCC
Q 021295 133 AEPK 136 (314)
Q Consensus 133 a~~~ 136 (314)
+...
T Consensus 102 a~~~ 105 (111)
T 2jvr_A 102 DDNP 105 (111)
T ss_dssp SCC-
T ss_pred CCCC
Confidence 8754
No 140
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=9.5e-18 Score=126.89 Aligned_cols=80 Identities=21% Similarity=0.348 Sum_probs=72.9
Q ss_pred CCCCCcceEEEcCCCCCCCHHHHHHHHhcc--CCeEEEEEeecCCCCCcceEEEEEeCChHHHHHHHHhcCCeeeCCeEE
Q 021295 51 SKDFKTKKIFVGGIPSSVNEDEFKDFFMQF--GDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQV 128 (314)
Q Consensus 51 ~~~~~~~~l~V~nLp~~~~e~~l~~~F~~~--G~v~~v~i~~~~~~g~~rG~afV~F~~~~~a~~a~~~l~~~~~~gr~l 128 (314)
....+.++|||.|||+++++++|+++|++| ++|++|.++ ++||||+|+++++|++||+.||+..|.+++|
T Consensus 10 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~g~v~~~~~~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l 81 (99)
T 2cpd_A 10 DTMSSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKI--------RDYAFVHFSNREDAVEAMKALNGKVLDGSPI 81 (99)
T ss_dssp SCSSCCCEEEEESCCTTCCHHHHHHHHHTTSTTCEEEEEEC--------SSEEEEEESSHHHHHHHHHHHSSEEETTEEE
T ss_pred cccCCcCEEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEe--------CCeEEEEeCCHHHHHHHHHHhCCCEeCCcEE
Confidence 345567899999999999999999999999 999999875 5699999999999999999999999999999
Q ss_pred EEeecCCCCC
Q 021295 129 EVKKAEPKKP 138 (314)
Q Consensus 129 ~V~~a~~~~~ 138 (314)
+|++++++..
T Consensus 82 ~v~~a~~~~~ 91 (99)
T 2cpd_A 82 EVTLAKPVDK 91 (99)
T ss_dssp EEECCCCCCC
T ss_pred EEEECCCCCC
Confidence 9999987654
No 141
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.76 E-value=4.7e-18 Score=127.36 Aligned_cols=82 Identities=22% Similarity=0.464 Sum_probs=72.4
Q ss_pred CCCcceEEEcCCCCCCCHHHHHHHHhccCCeEEEEEeecCCCCCcceEEEEEeCChHHHHHHHHhcCCeeeCCeEEEEee
Q 021295 53 DFKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVKK 132 (314)
Q Consensus 53 ~~~~~~l~V~nLp~~~~e~~l~~~F~~~G~v~~v~i~~~~~~g~~rG~afV~F~~~~~a~~a~~~l~~~~~~gr~l~V~~ 132 (314)
....++|||+|||++++|++|+++|++||+|++| +.++.+++ ||||+|+++++|++||+ ||+..|.+++|+|++
T Consensus 5 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v--~~~~~~g~---~afV~f~~~~~a~~ai~-l~g~~~~g~~l~V~~ 78 (94)
T 2e5g_A 5 SSGLRSVFVSGFPRGVDSAQLSEYFLAFGPVASV--VMDKDKGV---FAIVEMGDVGAREAVLS-QSQHSLGGHRLRVRP 78 (94)
T ss_dssp CTTCCEEEEECCCTTCCHHHHHHHGGGTSCEEEE--EECSSSCC---EEEEEESSHHHHHHHHT-CSCCEETTEECCCBC
T ss_pred cCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEE--EEcCCCCc---EEEEEECCHHHHHHHHh-cCCeEECCEEEEEEE
Confidence 3456899999999999999999999999999987 56666655 99999999999999999 999999999999998
Q ss_pred cCCCCCCC
Q 021295 133 AEPKKPNL 140 (314)
Q Consensus 133 a~~~~~~~ 140 (314)
+.++....
T Consensus 79 a~~~~~~~ 86 (94)
T 2e5g_A 79 REQKEFQS 86 (94)
T ss_dssp SCCSCCCC
T ss_pred CCcCCCCC
Confidence 87765443
No 142
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.76 E-value=1.5e-18 Score=134.01 Aligned_cols=83 Identities=19% Similarity=0.289 Sum_probs=73.7
Q ss_pred CCCCcceEEEcCCCCC-CCHHHHHHHHhccCCeEEEEEeecCCCCCcceEEEEEeCChHHHHHHHHhcC--CeeeCCeEE
Q 021295 52 KDFKTKKIFVGGIPSS-VNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGN--KLELAGAQV 128 (314)
Q Consensus 52 ~~~~~~~l~V~nLp~~-~~e~~l~~~F~~~G~v~~v~i~~~~~~g~~rG~afV~F~~~~~a~~a~~~l~--~~~~~gr~l 128 (314)
...+.++|||+|||++ ++|++|+++|++||+|++|+|++ +|+||||+|+++++|++||+.|+ ...|.+++|
T Consensus 21 ~~~p~~~l~V~NLp~~~~te~~L~~lF~~fG~V~~v~i~~------~kg~aFVef~~~~~A~~Ai~~l~~~~~~l~Gr~l 94 (112)
T 1x4f_A 21 KQELGRVIHLSNLPHSGYSDSAVLKLAEPYGKIKNYILMR------MKSQAFIEMETREDAMAMVDHCLKKALWFQGRCV 94 (112)
T ss_dssp SSCCCCEEEEESCCCSSCCSHHHHTTTTTTSCCSEEEEET------TTTEEEEECSSHHHHHHHHHHHHHSCCCSSSSCC
T ss_pred cCCCCCEEEEeCCCCccCCHHHHHHHHHhcCCEEEEEEec------CCCEEEEEECCHHHHHHHHHHhccCCceECCEEE
Confidence 3456889999999998 99999999999999999999974 37899999999999999999874 567999999
Q ss_pred EEeecCCCCCCC
Q 021295 129 EVKKAEPKKPNL 140 (314)
Q Consensus 129 ~V~~a~~~~~~~ 140 (314)
.|.+|..+....
T Consensus 95 ~V~~a~~~~~~~ 106 (112)
T 1x4f_A 95 KVDLSEKYKKLV 106 (112)
T ss_dssp EEEEECSCSSSS
T ss_pred EEEECccccccc
Confidence 999998776543
No 143
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.76 E-value=2.9e-18 Score=132.05 Aligned_cols=82 Identities=22% Similarity=0.456 Sum_probs=73.2
Q ss_pred CCCCCCCcceEEEcCCCCCCCHHHHHHHHhccCCeEEEEEeecCCCCCcceEEEEEeCChHHHHHHHHhcCCeeeCCeEE
Q 021295 49 VGSKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQV 128 (314)
Q Consensus 49 ~~~~~~~~~~l~V~nLp~~~~e~~l~~~F~~~G~v~~v~i~~~~~~g~~rG~afV~F~~~~~a~~a~~~l~~~~~~gr~l 128 (314)
....+.+.++|||+|||+++++++|+++|++||+|++|.|+ ++||||+|++.++|++|++.||+..|.+++|
T Consensus 24 ~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~--------kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l 95 (108)
T 2jvo_A 24 RQEGELSNTRLFVRPFPLDVQESELNEIFGPFGPMKEVKIL--------NGFAFVEFEEAESAAKAIEEVHGKSFANQPL 95 (108)
T ss_dssp ----CCSCSEEEECSSCTTCCHHHHHHHHTTTSCCCEEEEE--------TTEEEEECSSHHHHHHHHHHHTTCEETTEEC
T ss_pred ccCCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEE--------CCEEEEEECCHHHHHHHHHHcCCCEECCeEE
Confidence 34456778999999999999999999999999999999998 6799999999999999999999999999999
Q ss_pred EEeecCCCCC
Q 021295 129 EVKKAEPKKP 138 (314)
Q Consensus 129 ~V~~a~~~~~ 138 (314)
+|+++.++..
T Consensus 96 ~V~~a~~~~~ 105 (108)
T 2jvo_A 96 EVVYSKLPAK 105 (108)
T ss_dssp EEESCSCCC-
T ss_pred EEEEecCCCC
Confidence 9999987643
No 144
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.76 E-value=5.2e-18 Score=124.49 Aligned_cols=77 Identities=29% Similarity=0.571 Sum_probs=71.7
Q ss_pred CCCCcceEEEcCCCCCCCHHHHHHHHhccCCeEEEEEeecCCCCCcceEEEEEeCChHHHHHHHHhc-CCeeeCCeEEEE
Q 021295 52 KDFKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKG-NKLELAGAQVEV 130 (314)
Q Consensus 52 ~~~~~~~l~V~nLp~~~~e~~l~~~F~~~G~v~~v~i~~~~~~g~~rG~afV~F~~~~~a~~a~~~l-~~~~~~gr~l~V 130 (314)
.+.+.++|||.|||+++++++|+++|++||+|+.|+|+++ ++||||+|+++++|++|++.| ++..|.+++|+|
T Consensus 8 ~~~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~~~~~------kg~afV~f~~~~~A~~a~~~l~~~~~~~g~~l~v 81 (85)
T 2ytc_A 8 EDKTITTLYVGGLGDTITETDLRNHFYQFGEIRTITVVQR------QQCAFIQFATRQAAEVAAEKSFNKLIVNGRRLNV 81 (85)
T ss_dssp SCSSCCCEEEECCTTTSCHHHHHHHHHTTSCEEEEEEEGG------GTEEEEEESSHHHHHHHHHTTTTTCEETTEECCE
T ss_pred CCCCccEEEEcCCCCCCCHHHHHHHHHhCCCEeEEEEECC------CCEEEEEECCHHHHHHHHHHhcCCeeECCCEEEE
Confidence 4567789999999999999999999999999999999864 789999999999999999998 999999999999
Q ss_pred eecC
Q 021295 131 KKAE 134 (314)
Q Consensus 131 ~~a~ 134 (314)
++|+
T Consensus 82 ~~ak 85 (85)
T 2ytc_A 82 KWGR 85 (85)
T ss_dssp EECC
T ss_pred EecC
Confidence 9874
No 145
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.76 E-value=2.1e-18 Score=130.92 Aligned_cols=78 Identities=21% Similarity=0.436 Sum_probs=73.2
Q ss_pred ceEEEcCCCCCCCHHHHHHHHhccCCeEEEEEeecCCCCCcceEEEEEeCChHHHHHHHHhcCCeeeCCeEEEEeecCCC
Q 021295 57 KKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVKKAEPK 136 (314)
Q Consensus 57 ~~l~V~nLp~~~~e~~l~~~F~~~G~v~~v~i~~~~~~g~~rG~afV~F~~~~~a~~a~~~l~~~~~~gr~l~V~~a~~~ 136 (314)
++|||+|||+++++++|+++|++||+|++|.|+.+ +++||||+|+++++|++|++.||+..|.+++|+|+++.++
T Consensus 1 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~ 75 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARN-----PPGFAFVEFEDPRDAEDAVRGLDGKVICGSRVRVELSTGM 75 (101)
T ss_dssp CEEEEECCCSSCSHHHHHHHHHHHCCCSEEEEESS-----SSSEEEEECSSHHHHHHHHHHHHHSCSSSCCCEEEESSSC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC-----CCCEEEEEECCHHHHHHHHHHHCCCeECCcEEEEEEccCC
Confidence 47999999999999999999999999999999987 6889999999999999999999999999999999999987
Q ss_pred CCC
Q 021295 137 KPN 139 (314)
Q Consensus 137 ~~~ 139 (314)
...
T Consensus 76 ~~~ 78 (101)
T 2hvz_A 76 PRR 78 (101)
T ss_dssp CCS
T ss_pred CCc
Confidence 643
No 146
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.76 E-value=1.4e-18 Score=132.14 Aligned_cols=85 Identities=28% Similarity=0.624 Sum_probs=77.7
Q ss_pred CCCCcceEEEcCCCCCCCHHHHHHHHhccCCeEEEEEeecCCCCCcceEEEEEeCChHHHHHHHHhcCCeeeCCeEEEEe
Q 021295 52 KDFKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVK 131 (314)
Q Consensus 52 ~~~~~~~l~V~nLp~~~~e~~l~~~F~~~G~v~~v~i~~~~~~g~~rG~afV~F~~~~~a~~a~~~l~~~~~~gr~l~V~ 131 (314)
.+...++|||+|||+++++++|+++|++||+|+.|+|+.++ ++++++||||+|+++++|++||+ +.+.|+++.|.|.
T Consensus 5 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~Ai~--~~~~~~g~~l~v~ 81 (102)
T 2xs2_A 5 GKIMPNTVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDR-TGVSKGYGFVSFYNDVDVQKIVE--SQINFHGKKLKLG 81 (102)
T ss_dssp CEEEEEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECT-TSCEEEEEEEEESSCCCHHHHTT--CCCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECC-CCCccceEEEEECCHHHHHHHHh--CCCeECCEEEEEE
Confidence 34467899999999999999999999999999999999998 99999999999999999999999 8899999999999
Q ss_pred ecCCCCCC
Q 021295 132 KAEPKKPN 139 (314)
Q Consensus 132 ~a~~~~~~ 139 (314)
++.++...
T Consensus 82 ~a~~~~~~ 89 (102)
T 2xs2_A 82 PAIRKQNL 89 (102)
T ss_dssp EEEECC--
T ss_pred ECCcCcch
Confidence 99876544
No 147
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.75 E-value=5.8e-19 Score=126.51 Aligned_cols=75 Identities=35% Similarity=0.676 Sum_probs=71.7
Q ss_pred eEEEcCCCCCCCHHHHHHHHhccCCeEEEEEeecCCCCCcceEEEEEeCChHHHHHHHHhcCCeeeCCeEEEEeec
Q 021295 58 KIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVKKA 133 (314)
Q Consensus 58 ~l~V~nLp~~~~e~~l~~~F~~~G~v~~v~i~~~~~~g~~rG~afV~F~~~~~a~~a~~~l~~~~~~gr~l~V~~a 133 (314)
+|||+|||+++++++|+++|++||+|++|.|++++.++++++||||+|+++++|++||+. +...|.+++|+|++|
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g~~l~v~~a 75 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEK-KYHNVGLSKCEIKVA 75 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHHHSCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHTT-SSCCBTTBCCCEEEC
T ss_pred CEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHHh-CCCeECCEEEEEEEC
Confidence 699999999999999999999999999999999999999999999999999999999997 888999999999875
No 148
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.75 E-value=1e-18 Score=137.58 Aligned_cols=82 Identities=20% Similarity=0.279 Sum_probs=75.0
Q ss_pred CCcceEEEcCCCCCCCHHHHHHHHhccCCe----EEEEEeecCCCCCcceEEEEEeCChHHHHHHHHhcCCeeeCCeEEE
Q 021295 54 FKTKKIFVGGIPSSVNEDEFKDFFMQFGDV----QEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVE 129 (314)
Q Consensus 54 ~~~~~l~V~nLp~~~~e~~l~~~F~~~G~v----~~v~i~~~~~~g~~rG~afV~F~~~~~a~~a~~~l~~~~~~gr~l~ 129 (314)
.+..+|||+|||+++||+||+++|++|++| +.|+|+.+ .+++++|||||+|+++++|++||++ |+..|.++.|+
T Consensus 21 ~~~~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d-~~gr~~G~aFV~F~~~~~A~~Al~~-~~~~l~gR~i~ 98 (123)
T 2dha_A 21 ENQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTY-PDGRPTGDAFVLFACEEYAQNALRK-HKDLLGKRYIE 98 (123)
T ss_dssp CSCCEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEEC-TTSCEEEEEEECCSSHHHHHHHHTT-TTEESSSCEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhhCCccCCcceEEEEEC-CCCCEeeEEEEEECCHHHHHHHHHh-CCCeeCCeEEE
Confidence 346899999999999999999999999875 68999998 5899999999999999999999998 99999999999
Q ss_pred EeecCCCC
Q 021295 130 VKKAEPKK 137 (314)
Q Consensus 130 V~~a~~~~ 137 (314)
|..+.+++
T Consensus 99 V~~a~~~e 106 (123)
T 2dha_A 99 LFRSTAAE 106 (123)
T ss_dssp CEEECHHH
T ss_pred EEECCHHH
Confidence 99887654
No 149
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.75 E-value=3.3e-18 Score=129.84 Aligned_cols=78 Identities=17% Similarity=0.364 Sum_probs=72.2
Q ss_pred CCCcceEEEcCCCCCCCHHHHHHHHhccCCeEEEEEeecCCCCCcceEEEEEeCChHHHHHHHHhcCCeeeCCeEEEEee
Q 021295 53 DFKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVKK 132 (314)
Q Consensus 53 ~~~~~~l~V~nLp~~~~e~~l~~~F~~~G~v~~v~i~~~~~~g~~rG~afV~F~~~~~a~~a~~~l~~~~~~gr~l~V~~ 132 (314)
....++|||+|||+++++++|+++|++||+|++|+|+ ++++||||+|++.++|++||+.||+..|.+++|+|++
T Consensus 24 ~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~~~------~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 97 (101)
T 2la4_A 24 PPRVTTAYIGNIPHFATEADLIPLFQNFGFILDFKHY------PEKGCCFIKYDTHEQAAVCIVALANFPFQGRNLRTGW 97 (101)
T ss_dssp CSSCCEEEEESCCTTCCHHHHHHHHHTTSCCSEEEEE------TTTTEEEEECSSHHHHHHHHHHHTTCEETTEECCCCB
T ss_pred CCCCCEEEEcCCCcccCHHHHHHHHHhCCCEEEEEEe------cCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEe
Confidence 3456899999999999999999999999999999998 3578999999999999999999999999999999999
Q ss_pred cCCC
Q 021295 133 AEPK 136 (314)
Q Consensus 133 a~~~ 136 (314)
++++
T Consensus 98 a~~~ 101 (101)
T 2la4_A 98 GKER 101 (101)
T ss_dssp CCCC
T ss_pred ccCC
Confidence 8864
No 150
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.75 E-value=6e-19 Score=135.64 Aligned_cols=84 Identities=19% Similarity=0.269 Sum_probs=77.8
Q ss_pred CCCCcceEEEcCCCCCCCHHHHHHHHhccCC---eEEEEEeecCCCCCcceEEEEEeCChHHHHHHHHhcCCeeeCCeEE
Q 021295 52 KDFKTKKIFVGGIPSSVNEDEFKDFFMQFGD---VQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQV 128 (314)
Q Consensus 52 ~~~~~~~l~V~nLp~~~~e~~l~~~F~~~G~---v~~v~i~~~~~~g~~rG~afV~F~~~~~a~~a~~~l~~~~~~gr~l 128 (314)
+....++|||+|||++++|++|+++|++|+. |+.|+|+.++. ++++|||||+|+++++|++||+ +|...|.++.|
T Consensus 7 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~g~~~~v~~v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~i 84 (107)
T 2lmi_A 7 EVDDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRD-GKRRGDALIEMESEQDVQKALE-KHRMYMGQRYV 84 (107)
T ss_dssp CCSSCCEEEEECCCSSCCSHHHHHHTTTSCBTTTTTTEECCCCTT-STTCSEEEEEBSSHHHHHHHHT-TTTCCSSSSCC
T ss_pred CCCCccEEEEeCCCCCCCHHHHHHHHHhcCCcCCcceEEEEECCC-CCEeeEEEEEECCHHHHHHHHH-hCcceeCCeEE
Confidence 4456789999999999999999999999988 89999999987 9999999999999999999999 89999999999
Q ss_pred EEeecCCCC
Q 021295 129 EVKKAEPKK 137 (314)
Q Consensus 129 ~V~~a~~~~ 137 (314)
+|.++.+++
T Consensus 85 ~V~~a~~~~ 93 (107)
T 2lmi_A 85 EVYEINNED 93 (107)
T ss_dssp CCEECCHHH
T ss_pred EEEECCHHH
Confidence 999987654
No 151
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=2.6e-17 Score=124.05 Aligned_cols=82 Identities=18% Similarity=0.296 Sum_probs=73.4
Q ss_pred CCCCCcceEEEcCCCCCCCHHHHHHHHhccCCeEEEEEeecCCCCCcceEEEEEeCChHHHHHHHHhcCCeeeCCeEEEE
Q 021295 51 SKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEV 130 (314)
Q Consensus 51 ~~~~~~~~l~V~nLp~~~~e~~l~~~F~~~G~v~~v~i~~~~~~g~~rG~afV~F~~~~~a~~a~~~l~~~~~~gr~l~V 130 (314)
....+.++|||.|| ++++++|+++|++||+|+.|.|. ++++||||+|+++++|++||+.||+..|.+++|+|
T Consensus 10 ~~~~~~~~l~V~n~--~~t~~~l~~~F~~~G~i~~v~i~------~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v 81 (97)
T 1x5p_A 10 RAPRKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD------PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKV 81 (97)
T ss_dssp CCCCCCSEEEEECS--SCCHHHHHHHHTTTSCEEEEEEE------TTTTEEEEEESSHHHHHHHHHHTTTEEETTEEEEE
T ss_pred CCCCCCCEEEEcCC--CCCHHHHHHHHhhCCCEEEEEec------CCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEE
Confidence 34456789999996 89999999999999999999985 46889999999999999999999999999999999
Q ss_pred eecCCCCCCC
Q 021295 131 KKAEPKKPNL 140 (314)
Q Consensus 131 ~~a~~~~~~~ 140 (314)
+++.++....
T Consensus 82 ~~a~~~~~~~ 91 (97)
T 1x5p_A 82 NIARKQPMLD 91 (97)
T ss_dssp ECCSSCCCCC
T ss_pred EECCCCCCCC
Confidence 9998875543
No 152
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.75 E-value=9.8e-18 Score=137.46 Aligned_cols=83 Identities=11% Similarity=0.153 Sum_probs=74.5
Q ss_pred CCcceEEEcCCCCCCCHHHHHHHHhccCCeEEEEEeecCCCCCcceEEEEEeCChHHHHHHHHhcCCeeeCC--eEEEEe
Q 021295 54 FKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAG--AQVEVK 131 (314)
Q Consensus 54 ~~~~~l~V~nLp~~~~e~~l~~~F~~~G~v~~v~i~~~~~~g~~rG~afV~F~~~~~a~~a~~~l~~~~~~g--r~l~V~ 131 (314)
.+..+|||.||++.++|++|+++|++||+|++|+|+.++ +++||||+|++.++|++|++.||+.+|.+ ++|+|+
T Consensus 44 s~vl~l~VgNL~~~vted~L~~~Fs~fG~V~~V~i~~k~----~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g~g~~L~V~ 119 (164)
T 1sjr_A 44 SPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKN----NQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRID 119 (164)
T ss_dssp CCEEEEEECSCCSCCCHHHHHHHHHHHSCEEEEEEEESS----SCEEEEEEESCHHHHHHHHHHSTTBCSSSSCSCEEEE
T ss_pred CceEEEEEeCcCCCCCHHHHHHHHHhcCCEEEEEEEeCC----CCCEEEEEECCHHHHHHHHHHhCCCEecCCCcEEEEE
Confidence 445789999999999999999999999999999997542 58899999999999999999999999966 999999
Q ss_pred ecCCCCCCC
Q 021295 132 KAEPKKPNL 140 (314)
Q Consensus 132 ~a~~~~~~~ 140 (314)
+++++....
T Consensus 120 ~Ak~~~l~v 128 (164)
T 1sjr_A 120 FSKLTSLNV 128 (164)
T ss_dssp ECSSSSCCC
T ss_pred EecCCcccc
Confidence 999876543
No 153
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=3.3e-18 Score=127.90 Aligned_cols=80 Identities=18% Similarity=0.360 Sum_probs=71.1
Q ss_pred CCCcceEEEcCCCCCCCHHHHHHHHhccCC-eEEEEEeecCCCCCcceEEEEEeCChHHHHHHHHhcCC-eeeCCeEEEE
Q 021295 53 DFKTKKIFVGGIPSSVNEDEFKDFFMQFGD-VQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNK-LELAGAQVEV 130 (314)
Q Consensus 53 ~~~~~~l~V~nLp~~~~e~~l~~~F~~~G~-v~~v~i~~~~~~g~~rG~afV~F~~~~~a~~a~~~l~~-~~~~gr~l~V 130 (314)
..+.++|||+|||++++|++|+++|++||+ |+.+.|. +++||||+|+++++|++||+.||+ ..|.+++|+|
T Consensus 5 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~vv~~~~~~-------~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v 77 (93)
T 2cqh_A 5 SSGMNKLYIGNLSPAVTADDLRQLFGDRKLPLAGQVLL-------KSGYAFVDYPDQNWAIRAIETLSGKVELHGKIMEV 77 (93)
T ss_dssp CCCCCCEEEECCCTTCCHHHHHHHHHHTTCCCSSCEEE-------ETTEEEECCSCHHHHHHHHHHHTTTCEETTEECEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHcCCceEEEEEc-------CCCEEEEEECCHHHHHHHHHHccCCeeECCEEEEE
Confidence 456789999999999999999999999999 6656553 478999999999999999999999 9999999999
Q ss_pred eecCCCCCC
Q 021295 131 KKAEPKKPN 139 (314)
Q Consensus 131 ~~a~~~~~~ 139 (314)
+++.++...
T Consensus 78 ~~a~~~~~~ 86 (93)
T 2cqh_A 78 DYSVSKKLR 86 (93)
T ss_dssp EECCCCCCC
T ss_pred EEccCcccc
Confidence 999876543
No 154
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=99.60 E-value=8.6e-20 Score=142.34 Aligned_cols=85 Identities=21% Similarity=0.382 Sum_probs=80.2
Q ss_pred CCCcceEEEcCCCCCCCHHHHHHHHhccCCeEE--------EEEeecCCCCCcceEEEEEeCChHHHHHHHHhcCCeeeC
Q 021295 53 DFKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQE--------HQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELA 124 (314)
Q Consensus 53 ~~~~~~l~V~nLp~~~~e~~l~~~F~~~G~v~~--------v~i~~~~~~g~~rG~afV~F~~~~~a~~a~~~l~~~~~~ 124 (314)
..+.++|||+|||+++++++|+++|++||+|+. |.|+.++.++++++||||+|+++++|++||+.||+..|.
T Consensus 4 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~ 83 (116)
T 2lcw_A 4 NSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFS 83 (116)
Confidence 456789999999999999999999999999998 999999889999999999999999999999999999999
Q ss_pred CeEEEEeecCCCC
Q 021295 125 GAQVEVKKAEPKK 137 (314)
Q Consensus 125 gr~l~V~~a~~~~ 137 (314)
+++|+|+++.++.
T Consensus 84 g~~l~V~~a~~~~ 96 (116)
T 2lcw_A 84 GNPIKVSFATRRA 96 (116)
Confidence 9999999998764
No 155
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.75 E-value=9.7e-18 Score=126.54 Aligned_cols=78 Identities=22% Similarity=0.488 Sum_probs=71.4
Q ss_pred CCCCCcceEEEcCCCC-CCCHHHHHHHHhccCCeEEEEEeecCCCCCcceEEEEEeCChHHHHHHHHhcCCeeeCCeEEE
Q 021295 51 SKDFKTKKIFVGGIPS-SVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVE 129 (314)
Q Consensus 51 ~~~~~~~~l~V~nLp~-~~~e~~l~~~F~~~G~v~~v~i~~~~~~g~~rG~afV~F~~~~~a~~a~~~l~~~~~~gr~l~ 129 (314)
....+.++|||+|||+ ++++++|+++|++||+|++|+|. ++||||+|++.++|++||+.||+..|.+++|+
T Consensus 17 ~~~~~~~~l~V~nLp~~~~t~~~L~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~ 88 (97)
T 2xnq_A 17 RGSHMKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK--------NAFGFIQFDNPQSVRDAIEXESQEMNFGKKLI 88 (97)
T ss_dssp --CCTTCEEEEESCCSSCCCHHHHHHHHGGGSCEEEEEEC--------SSEEEEEESSHHHHHHHHHHHTTSEETTEECE
T ss_pred CCCCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe--------CCEEEEEECCHHHHHHHHHHcCCCEECCEEEE
Confidence 3456789999999998 99999999999999999999983 67999999999999999999999999999999
Q ss_pred EeecCCC
Q 021295 130 VKKAEPK 136 (314)
Q Consensus 130 V~~a~~~ 136 (314)
|++++++
T Consensus 89 V~~a~~~ 95 (97)
T 2xnq_A 89 LEVSSSN 95 (97)
T ss_dssp EEECCCC
T ss_pred EEecCCC
Confidence 9998865
No 156
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.74 E-value=4.9e-18 Score=127.62 Aligned_cols=83 Identities=19% Similarity=0.340 Sum_probs=74.3
Q ss_pred CCCCCcceEEEcCCCCCCCHHHHHHHHhccCCeEEEEEeecCCCCCcceEEEEEeCChHHHHHHHHhcCCeeeCCeEEEE
Q 021295 51 SKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEV 130 (314)
Q Consensus 51 ~~~~~~~~l~V~nLp~~~~e~~l~~~F~~~G~v~~v~i~~~~~~g~~rG~afV~F~~~~~a~~a~~~l~~~~~~gr~l~V 130 (314)
..+.+.++|||+|||+++++++|+++|++|++|+.| ..++++++||||+|+++++|++||+.||+..|.+++|+|
T Consensus 11 ~~~~~~~~l~V~nL~~~~t~~~l~~~F~~~g~v~~~-----~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 85 (96)
T 1fjc_A 11 KKVRAARTLLAKNLSFNITEDELKEVFEDALEIRLV-----SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSL 85 (96)
T ss_dssp STTTGGGEEEEESCCSSCCHHHHHHHHCSEEEECCE-----EETTEEEEEEEEEESSHHHHHHHHHHTTEEEETTEEEEE
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHhhCCcEEEe-----CCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEE
Confidence 345678999999999999999999999999887665 346789999999999999999999999999999999999
Q ss_pred eecCCCCC
Q 021295 131 KKAEPKKP 138 (314)
Q Consensus 131 ~~a~~~~~ 138 (314)
+++.++..
T Consensus 86 ~~a~~~~~ 93 (96)
T 1fjc_A 86 YYTGEKGG 93 (96)
T ss_dssp EECSSSCC
T ss_pred EEcCCCCC
Confidence 99987643
No 157
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.74 E-value=6.3e-18 Score=133.85 Aligned_cols=83 Identities=12% Similarity=0.263 Sum_probs=74.8
Q ss_pred CCCcceEEEcCCCCCCCHHHHH----HHHhccCCeEEEEEeecCCCCCcceEEEEEeCChHHHHHHHHhcCCeeeCCeEE
Q 021295 53 DFKTKKIFVGGIPSSVNEDEFK----DFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQV 128 (314)
Q Consensus 53 ~~~~~~l~V~nLp~~~~e~~l~----~~F~~~G~v~~v~i~~~~~~g~~rG~afV~F~~~~~a~~a~~~l~~~~~~gr~l 128 (314)
..+.++|||+|||+.+++++|+ ++|++||+|++|.|.. +++++|||||+|++.++|++||+.||+..|.+++|
T Consensus 26 ~~p~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~~v~i~~---~~~~rG~aFV~F~~~~~A~~Ai~~lng~~l~gr~l 102 (127)
T 2a3j_A 26 TEPSQVVLITNINPEVPKEKLQALLYALASSQGDILDIVVDL---SDDNSGKAYIVFATQESAQAFVEAFQGYPFQGNPL 102 (127)
T ss_dssp CSCCSEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECC---CCSSCCCEEEEESSHHHHHHHHHHSTTCCCTTSCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHhccCCCeEEEEecc---CCCcCCEEEEEECCHHHHHHHHHHHCCCEeCCCEE
Confidence 4457899999999999999876 6899999999988853 56789999999999999999999999999999999
Q ss_pred EEeecCCCCC
Q 021295 129 EVKKAEPKKP 138 (314)
Q Consensus 129 ~V~~a~~~~~ 138 (314)
+|++|..+..
T Consensus 103 ~V~~a~~~~~ 112 (127)
T 2a3j_A 103 VITFSETPQS 112 (127)
T ss_dssp EEEECCCCCH
T ss_pred EEEEccCcch
Confidence 9999987654
No 158
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.74 E-value=1.2e-18 Score=137.49 Aligned_cols=83 Identities=18% Similarity=0.344 Sum_probs=74.7
Q ss_pred CCCCcceEEEcCCCCCCCHHHHHHHHhccCCeE--EEEEeecCCCCCcceEEEEEeCChHHHHHHHHhcCCeeeCCeEEE
Q 021295 52 KDFKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQ--EHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVE 129 (314)
Q Consensus 52 ~~~~~~~l~V~nLp~~~~e~~l~~~F~~~G~v~--~v~i~~~~~~g~~rG~afV~F~~~~~a~~a~~~l~~~~~~gr~l~ 129 (314)
...+.++|||+|||+++||++|+++|++| .|+ +|+|+.|+. ++++|||||+|+++++|++||++ ++..|.++.|+
T Consensus 38 ~~~~~~~lfVgnLp~~~te~dL~~~F~~~-~i~~~~v~i~~d~~-GrsrGfaFV~F~~~e~A~~Al~~-~~~~l~gR~I~ 114 (126)
T 2hgm_A 38 DSANDGFVRLRGLPFGCTKEEIVQFFSGL-EIVPNGITLPVDPE-GKITGEAFVQFASQELAEKALGK-HKERIGHRYIE 114 (126)
T ss_dssp CSSSCCEEEEECCCTTCCHHHHHHHTTTS-CEEEEEEECCCCSS-SSSCSEEEEEESSTTHHHHHHTT-TTCCBTTBCCC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHhcC-CceeeEEEEEECCC-CCCceEEEEEECCHHHHHHHHHH-CCCEECCEEEE
Confidence 34567899999999999999999999999 777 899999976 99999999999999999999997 66999999999
Q ss_pred EeecCCCC
Q 021295 130 VKKAEPKK 137 (314)
Q Consensus 130 V~~a~~~~ 137 (314)
|..+.+++
T Consensus 115 V~~a~~~e 122 (126)
T 2hgm_A 115 VFKSSQEE 122 (126)
T ss_dssp CEEECHHH
T ss_pred EEECCHHH
Confidence 99887543
No 159
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.74 E-value=4.3e-18 Score=142.68 Aligned_cols=85 Identities=15% Similarity=0.315 Sum_probs=79.6
Q ss_pred CCcceEEEcCCCCCCCHHHHHHHHhccCCeEEEEEeecCCCCCcceEEEEEeCChHHHHHHHHhcCCeeeCCeEEEEeec
Q 021295 54 FKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVKKA 133 (314)
Q Consensus 54 ~~~~~l~V~nLp~~~~e~~l~~~F~~~G~v~~v~i~~~~~~g~~rG~afV~F~~~~~a~~a~~~l~~~~~~gr~l~V~~a 133 (314)
.+.++|||.|||+++++++|+++|++||+|+.|.|+.++ ++++++||||+|+++++|++||+.||+..|.+++|+|++|
T Consensus 86 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~-~g~~kG~afV~F~~~~~A~~Ai~~lng~~l~Gr~l~V~~a 164 (177)
T 2f3j_A 86 ETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDR-SGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQLV 164 (177)
T ss_dssp TTCEEEEEECCCSCCCHHHHHHHHHHTSCCSEEEECCCT-TSSCSCCEEEEESCHHHHHHHHHHSTTCBCSSSBCEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCEeeEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEe
Confidence 456799999999999999999999999999999999998 8999999999999999999999999999999999999999
Q ss_pred CCCCCC
Q 021295 134 EPKKPN 139 (314)
Q Consensus 134 ~~~~~~ 139 (314)
......
T Consensus 165 ~~~~~~ 170 (177)
T 2f3j_A 165 ASQIDL 170 (177)
T ss_dssp SSGGGG
T ss_pred cCCCCC
Confidence 876443
No 160
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.74 E-value=1.8e-18 Score=126.01 Aligned_cols=74 Identities=15% Similarity=0.348 Sum_probs=68.5
Q ss_pred cceEEEcCCCCCC------CHHHHHHHHhccCCeEEEEEeecCCCCCcceEEEEEeCChHHHHHHHHhcCCeeeCCe-EE
Q 021295 56 TKKIFVGGIPSSV------NEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGA-QV 128 (314)
Q Consensus 56 ~~~l~V~nLp~~~------~e~~l~~~F~~~G~v~~v~i~~~~~~g~~rG~afV~F~~~~~a~~a~~~l~~~~~~gr-~l 128 (314)
+++|||+|||+++ ++++|+++|++||+|++|.|+ +.++++++||||+|+++++|++||+.||+..|.++ +|
T Consensus 1 ~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~~v~i~--~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~~l 78 (81)
T 2krb_A 1 DSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYP--EEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTF 78 (81)
T ss_dssp CCEEEEESCCCCCTTTHHHHHHHHHHHHHTTCCEEEEECC--CBTTBCCCEEEEEESSHHHHHHHHTTSSSCCCSSSSCC
T ss_pred CCEEEEeCCCCCcHHHHHHHHHHHHHHHhhcCCeEEEEec--CCCCcEeEEEEEEECCHHHHHHHHHHhcCcccCCceeE
Confidence 3689999999999 779999999999999999988 46889999999999999999999999999999999 88
Q ss_pred EEe
Q 021295 129 EVK 131 (314)
Q Consensus 129 ~V~ 131 (314)
+|+
T Consensus 79 ~V~ 81 (81)
T 2krb_A 79 RVN 81 (81)
T ss_dssp CCC
T ss_pred EeC
Confidence 773
No 161
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.74 E-value=1.1e-17 Score=144.23 Aligned_cols=85 Identities=20% Similarity=0.358 Sum_probs=78.6
Q ss_pred CCCcceEEEcCCCCCCCHHHHHHHHhccCCeEEEEEeecCCCCCcceEEEEEeCChHHHHHHHHhcCCeeeCCeEEEEee
Q 021295 53 DFKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVKK 132 (314)
Q Consensus 53 ~~~~~~l~V~nLp~~~~e~~l~~~F~~~G~v~~v~i~~~~~~g~~rG~afV~F~~~~~a~~a~~~l~~~~~~gr~l~V~~ 132 (314)
..+.++|||+|||+++||++|+++|++||+|++|+|++|+.++++++||||+|+++++|++||+.+|...+.++.|+|.+
T Consensus 12 ~~p~~tlfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~~~~~~~~g~~i~~~~ 91 (213)
T 4f02_A 12 SYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMW 91 (213)
T ss_dssp ---CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEecccCCCCccccccceeCCHHHHHHHHHHhhhhhcCCccccccc
Confidence 34668999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred cCCCC
Q 021295 133 AEPKK 137 (314)
Q Consensus 133 a~~~~ 137 (314)
+....
T Consensus 92 ~~~~~ 96 (213)
T 4f02_A 92 SQRDP 96 (213)
T ss_dssp CCCCT
T ss_pred ccccc
Confidence 87654
No 162
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.73 E-value=9.5e-18 Score=126.04 Aligned_cols=82 Identities=20% Similarity=0.319 Sum_probs=74.2
Q ss_pred CCCCcceEEEcCCCCCCCHHHHHHHHhccCCeEEE-EEeecCCCCCcceEEEEEeCChHHHHHHHHhcCCeeeCCeEEEE
Q 021295 52 KDFKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEH-QIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEV 130 (314)
Q Consensus 52 ~~~~~~~l~V~nLp~~~~e~~l~~~F~~~G~v~~v-~i~~~~~~g~~rG~afV~F~~~~~a~~a~~~l~~~~~~gr~l~V 130 (314)
.....++|||+|||+++++++|+++|++||+|+.| .|+.++.++ .|||+|+++++|++||+.||+..|.+++|+|
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~i~~~~~~~----~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V 86 (96)
T 2e44_A 11 KRQRIRKLQIRNIPPHLQWEVLDSLLVQYGVVESCEQVNTDSETA----VVNVTYSSKDQARQALDKLNGFQLENFTLKV 86 (96)
T ss_dssp CCCSCCCEEEEEECSSSCHHHHHHHHHHHSCEEEEEEECCSSSSE----EEEEEESSHHHHHHHHHHHTTCBCSSCBCEE
T ss_pred CCCCCCEEEEEcCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCC----EEEEEECCHHHHHHHHHHhCCCEECCcEEEE
Confidence 34457899999999999999999999999999999 488876554 3999999999999999999999999999999
Q ss_pred eecCCCC
Q 021295 131 KKAEPKK 137 (314)
Q Consensus 131 ~~a~~~~ 137 (314)
+++.++.
T Consensus 87 ~~a~~~~ 93 (96)
T 2e44_A 87 AYIPDEM 93 (96)
T ss_dssp EECCCCC
T ss_pred EEcCccc
Confidence 9999873
No 163
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.73 E-value=2.4e-17 Score=140.03 Aligned_cols=117 Identities=17% Similarity=0.314 Sum_probs=91.2
Q ss_pred CHHHHHHHHHcc--C--ccCCcEEEEeecCCCCCCCC-----CCCCcceEEEcCCCCCCCHHHHHHHHhccCCeEEEEEe
Q 021295 19 DPSVVDKVIEDT--H--IINGKQVEIKRTIPKGAVGS-----KDFKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIM 89 (314)
Q Consensus 19 ~~~~a~~A~~~~--~--~i~g~~i~v~~~~~~~~~~~-----~~~~~~~l~V~nLp~~~~e~~l~~~F~~~G~v~~v~i~ 89 (314)
+.+.+.+|+++. . ++......+++....+.... .+.+.++|||.|||+++++++|+++|++||+|+.|+|+
T Consensus 63 d~~~I~~Al~~S~~~~lev~ed~~~vrR~~~~p~p~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~ 142 (193)
T 2voo_A 63 DFNVIVEALSKSKAELMEISEDKTKIRRSPSKPLPEVTDEYKNDVKNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMR 142 (193)
T ss_dssp CHHHHHHHHHTCSSCCEEECTTSSEEEECTTSCCCCCCHHHHHHHHHTEEEEECCCTTCCHHHHHHHHTTSCCEEEEEEE
T ss_pred CHHHHHHHHhhcccceEEEecccceEEecccCCCcccchhhhhccccCEEEecCCCCcCCHHHHHHHHhcCCCEEEEEEE
Confidence 667788888754 2 33444445555422211111 22356899999999999999999999999999999999
Q ss_pred ecCCCCCcceEEEEEeCChHHHHHHHHhcCCeeeCCeEEEEeecCCCC
Q 021295 90 RDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVKKAEPKK 137 (314)
Q Consensus 90 ~~~~~g~~rG~afV~F~~~~~a~~a~~~l~~~~~~gr~l~V~~a~~~~ 137 (314)
++. +++++|||||+|+++++|++||+.++ ..|.+++|.|.++....
T Consensus 143 ~~~-~~~~kG~aFVeF~~~e~A~~A~~~~~-~~~~Gr~l~V~~~~~y~ 188 (193)
T 2voo_A 143 RTL-HKAFKGSIFVVFDSIESAKKFVETPG-QKYKETDLLILFKDDYF 188 (193)
T ss_dssp ECT-TCCEEEEEEEEESSHHHHHHHHHCTT-CEETTEECEEEETTTC-
T ss_pred ECC-CCCcccEEEEEECCHHHHHHHHHhCC-CeECCEEEEEEEhHHHH
Confidence 986 58899999999999999999998865 58999999999887653
No 164
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.73 E-value=6.5e-18 Score=131.56 Aligned_cols=76 Identities=24% Similarity=0.424 Sum_probs=66.2
Q ss_pred CCcceEEEcCCCCCCCHHHHHHHHhccCCeEEEEEeecCCCCCcceEEEEEeCChHHHHHHHHhcCCeeeCCeE-----E
Q 021295 54 FKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQ-----V 128 (314)
Q Consensus 54 ~~~~~l~V~nLp~~~~e~~l~~~F~~~G~v~~v~i~~~~~~g~~rG~afV~F~~~~~a~~a~~~l~~~~~~gr~-----l 128 (314)
...++|||.|||++++|++|+++|++||+|+.|.|+.+ +||||+|+++++|++||+.||+.+|++++ |
T Consensus 14 r~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~-------g~afV~f~~~~~a~~Ai~~l~g~~~~gr~~~~~~i 86 (115)
T 3beg_B 14 RSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-------GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYI 86 (115)
T ss_dssp ---CCEEEEECCSSCCTTHHHHHHGGGSCEEEEEECTT-------SEEEEEESSHHHHHHHHHHHTTCBCCCTTSCCCBC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEecC-------CEEEEEECCHHHHHHHHHHhCCCEECCcEeeeEEE
Confidence 34689999999999999999999999999999999865 79999999999999999999999999988 6
Q ss_pred EEeecCCC
Q 021295 129 EVKKAEPK 136 (314)
Q Consensus 129 ~V~~a~~~ 136 (314)
+|+.+.+.
T Consensus 87 ~v~~~~~~ 94 (115)
T 3beg_B 87 RVKVDGPR 94 (115)
T ss_dssp EEEECC--
T ss_pred EeccCCCC
Confidence 66665543
No 165
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.73 E-value=5.6e-18 Score=127.48 Aligned_cols=83 Identities=17% Similarity=0.387 Sum_probs=75.5
Q ss_pred CCCcceEEEcCCCCCCCHHHHH----HHHhccCCeEEEEEeecCCCCCcceEEEEEeCChHHHHHHHHhcCCeeeCCeEE
Q 021295 53 DFKTKKIFVGGIPSSVNEDEFK----DFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQV 128 (314)
Q Consensus 53 ~~~~~~l~V~nLp~~~~e~~l~----~~F~~~G~v~~v~i~~~~~~g~~rG~afV~F~~~~~a~~a~~~l~~~~~~gr~l 128 (314)
..+.++|||+|||+++++++|+ ++|++||+|++|.|+. ++++++||||+|+++++|++|++.||+..|.+++|
T Consensus 5 ~~~~~~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~~v~i~~---~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l 81 (97)
T 1nu4_A 5 TRPNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSR---SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPM 81 (97)
T ss_dssp -CCCSEEEEESCCTTSCHHHHHHHHHHHHGGGSCEEEEECCH---HHHHTTCEEEEESSHHHHHHHHHHHTTCEETTEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhCCCEEEEEEEc---CCCcCcEEEEEeCCHHHHHHHHHHhCCCEECCcEE
Confidence 3467899999999999999999 9999999999999874 45678999999999999999999999999999999
Q ss_pred EEeecCCCCC
Q 021295 129 EVKKAEPKKP 138 (314)
Q Consensus 129 ~V~~a~~~~~ 138 (314)
+|+++.++..
T Consensus 82 ~v~~a~~~~~ 91 (97)
T 1nu4_A 82 RIQYAKTDSD 91 (97)
T ss_dssp EEEECSSCCT
T ss_pred EEEEccCCCc
Confidence 9999988654
No 166
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.72 E-value=1.1e-17 Score=124.24 Aligned_cols=80 Identities=30% Similarity=0.594 Sum_probs=64.2
Q ss_pred CCCCcceEEEcCCCCCCCHHHHHHHHhccCCeEEEEEeecCCCCCcceEEEEEeCChHHHHHHHHhcCCeeeCCeEEEEe
Q 021295 52 KDFKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVK 131 (314)
Q Consensus 52 ~~~~~~~l~V~nLp~~~~e~~l~~~F~~~G~v~~v~i~~~~~~g~~rG~afV~F~~~~~a~~a~~~l~~~~~~gr~l~V~ 131 (314)
...+..+|||+|||++++|++|+++|++||+|++|+|+++ +||||||+|+++++|+++.. ..+.+.+++|.|+
T Consensus 7 ~~~~~~~l~V~~Lp~~~te~~L~~~F~~~G~i~~v~i~~~-----srGfaFV~F~~~~~A~~~~~--~~~~~~g~~v~v~ 79 (89)
T 3d2w_A 7 HHHHGSKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKP-----FRAFAFVTFADDKVAQSLCG--EDLIIKGISVHIS 79 (89)
T ss_dssp ----CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCSS-----CCSEEEEEESCHHHHHHHTT--CEEEETTEEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEeeC-----CCCEEEEEECCHHHHHHHcC--CCcccCCEEEEEE
Confidence 4567789999999999999999999999999999999875 78999999999999985432 2455679999999
Q ss_pred ecCCCCC
Q 021295 132 KAEPKKP 138 (314)
Q Consensus 132 ~a~~~~~ 138 (314)
+|.++..
T Consensus 80 ~a~~k~~ 86 (89)
T 3d2w_A 80 NAEPKHN 86 (89)
T ss_dssp ECC----
T ss_pred EcCCCCc
Confidence 9987654
No 167
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.72 E-value=7.1e-18 Score=126.92 Aligned_cols=79 Identities=22% Similarity=0.447 Sum_probs=71.3
Q ss_pred CCCCcceEEEcCCCC-CCCHHHHHHHHhccCCeEEEEEeecCCCCCcceEEEEEeCChHHHHHHHHhcCCeeeCCeEEEE
Q 021295 52 KDFKTKKIFVGGIPS-SVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEV 130 (314)
Q Consensus 52 ~~~~~~~l~V~nLp~-~~~e~~l~~~F~~~G~v~~v~i~~~~~~g~~rG~afV~F~~~~~a~~a~~~l~~~~~~gr~l~V 130 (314)
...+.++|||+|||+ ++++++|+++|++||+|++|.|. ++||||+|+++++|++||+.||+..|.+++|+|
T Consensus 6 ~~~~~~~l~V~nlp~~~~t~~~l~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V 77 (96)
T 2kvi_A 6 NIPPKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK--------NAFGFIQFDNPQSVRDAIECESQEMNFGKKLIL 77 (96)
T ss_dssp ---CCEEEEEESSTTSCCCHHHHHHHHTTTCCCCEEEEE--------TTEEEEEESCHHHHHHHHHHHTCSSCBTTTBCE
T ss_pred cCCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe--------CCEEEEEECCHHHHHHHHHHcCCCeeCCcEEEE
Confidence 345678999999999 99999999999999999999994 679999999999999999999999999999999
Q ss_pred eecCCCCC
Q 021295 131 KKAEPKKP 138 (314)
Q Consensus 131 ~~a~~~~~ 138 (314)
+++.++..
T Consensus 78 ~~a~~~~~ 85 (96)
T 2kvi_A 78 EVSSSNAR 85 (96)
T ss_dssp EEEECCCC
T ss_pred EEcCcCCC
Confidence 99987654
No 168
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.72 E-value=1.5e-17 Score=129.22 Aligned_cols=82 Identities=10% Similarity=0.310 Sum_probs=75.3
Q ss_pred CCCcceEEEcCCCCCCCHHHHHHHHhccCCeEEEEEeecCCCCCcceEEEEEeCChHHHHHHHHhcCCeeeCCeEEEEee
Q 021295 53 DFKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVKK 132 (314)
Q Consensus 53 ~~~~~~l~V~nLp~~~~e~~l~~~F~~~G~v~~v~i~~~~~~g~~rG~afV~F~~~~~a~~a~~~l~~~~~~gr~l~V~~ 132 (314)
..+.++|||.|||+++++++|+++|++||+|++|.|+.+. ++++||||+|++.++|++||+.||+..|.++.|.|.+
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~---~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 81 (115)
T 3lqv_A 5 PEVNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNTP---ETRGTAYVVYEDIFDAKNAVDHLSGFNVSNRYLVVLY 81 (115)
T ss_dssp TTCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEECST---TTTTCEEEEESSHHHHHHHHHHHTTCBSSSCBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCC---CCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEE
Confidence 3457899999999999999999999999999999999764 4589999999999999999999999999999999999
Q ss_pred cCCCC
Q 021295 133 AEPKK 137 (314)
Q Consensus 133 a~~~~ 137 (314)
+.++.
T Consensus 82 a~~~~ 86 (115)
T 3lqv_A 82 YNANR 86 (115)
T ss_dssp CCHHH
T ss_pred ecCCh
Confidence 98654
No 169
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=1.9e-17 Score=127.98 Aligned_cols=82 Identities=15% Similarity=0.243 Sum_probs=72.3
Q ss_pred CCCCcceEEE--cCCCCCCCHHHHHHHHhccCCeEEEEEeecCCCCCcceEEEEEeCChHHHHHHHHhcCCeee-----C
Q 021295 52 KDFKTKKIFV--GGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLEL-----A 124 (314)
Q Consensus 52 ~~~~~~~l~V--~nLp~~~~e~~l~~~F~~~G~v~~v~i~~~~~~g~~rG~afV~F~~~~~a~~a~~~l~~~~~-----~ 124 (314)
...++++||| +||+++++|++|+++|++||+|++|.|+.+ |+||||+|+++++|++|++.||+.+| .
T Consensus 21 ~~~pt~~L~V~Ng~L~~~~te~~L~~~F~~fG~v~~v~i~~~------rgfaFV~f~~~~~A~~Ai~~lnG~~~~~~lg~ 94 (114)
T 2cq2_A 21 VSYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPPN------KPYSFARYRTTEESKRAYVTLNGKEVVDDLGQ 94 (114)
T ss_dssp CSSCCSEEEEETCTGGGTCCHHHHHHHHHHHSCEEEEECCTT------CSCEEEEESSHHHHHHHHHHTTTCEEECTTSC
T ss_pred CCCCCCEEEEECCCCCCCCCHHHHHHHHHhcCCeEEEEEeCC------CCEEEEEECCHHHHHHHHHHhCCCEEccccCC
Confidence 3456789999 779999999999999999999999988643 78999999999999999999999988 6
Q ss_pred CeEEEEeecCCCCCC
Q 021295 125 GAQVEVKKAEPKKPN 139 (314)
Q Consensus 125 gr~l~V~~a~~~~~~ 139 (314)
+++|.|.++......
T Consensus 95 g~~l~v~~a~~~p~~ 109 (114)
T 2cq2_A 95 KITLYLNFVEKVQWS 109 (114)
T ss_dssp EEECEEEEESCCCCS
T ss_pred CcEEEEEecccCccc
Confidence 899999999865443
No 170
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.72 E-value=2.5e-17 Score=121.88 Aligned_cols=77 Identities=16% Similarity=0.286 Sum_probs=71.3
Q ss_pred CcceEEEcCCCCCCCHHHHHHHHhccCCeEEEEEeecCCCCCcceEEEEEeCChHHHHHHHHhcCCeeeCCeEEEEeecC
Q 021295 55 KTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVKKAE 134 (314)
Q Consensus 55 ~~~~l~V~nLp~~~~e~~l~~~F~~~G~v~~v~i~~~~~~g~~rG~afV~F~~~~~a~~a~~~l~~~~~~gr~l~V~~a~ 134 (314)
..++|||+|||++++|++|+++|++| +|++|+|. ++++||||+|+++++|++|++.||+..|.+++|+|+++.
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~-~v~~~~i~------~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~ 76 (88)
T 1wg1_A 4 GSSGILVKNLPQDSNCQEVHDLLKDY-DLKYCYVD------RNKRTAFVTLLNGEQAQNAIQMFHQYSFRGKDLIVQLQP 76 (88)
T ss_dssp CCCCEEEESCCSSCCHHHHHHHTCSS-CCCCEEEE------GGGTEEEECCSCHHHHHHHHHHHTTEEETTEEEEEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhhC-CeEEEEEe------CCCcEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEEcC
Confidence 46899999999999999999999999 99999884 578999999999999999999999999999999999987
Q ss_pred CCCC
Q 021295 135 PKKP 138 (314)
Q Consensus 135 ~~~~ 138 (314)
....
T Consensus 77 ~~~~ 80 (88)
T 1wg1_A 77 TDAL 80 (88)
T ss_dssp CCCC
T ss_pred CCce
Confidence 6543
No 171
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.72 E-value=1.1e-17 Score=129.36 Aligned_cols=78 Identities=10% Similarity=0.093 Sum_probs=72.1
Q ss_pred CcceEEEcCCCCCCCHHHHHHHHhccCCeEEEEEeecCCCCCcceEEEEEeCChHHHHHHHHhcCCeeeCCeEEEEeecC
Q 021295 55 KTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVKKAE 134 (314)
Q Consensus 55 ~~~~l~V~nLp~~~~e~~l~~~F~~~G~v~~v~i~~~~~~g~~rG~afV~F~~~~~a~~a~~~l~~~~~~gr~l~V~~a~ 134 (314)
..++|||.|||+++++++|+++|++||+|++|.|++ +++||||+|++.++|++||+.||+..|.+++|.|++|.
T Consensus 9 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~------~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 82 (111)
T 1whx_A 9 SKTVILAKNLPAGTLAAEIQETFSRFGSLGRVLLPE------GGITAIVEFLEPLEARKAFRHLAYSKFHHVPLYLEWAP 82 (111)
T ss_dssp EEEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCS------SSSCEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeC------CCCEEEEEeCCHHHHHHHHHHhCCCEECCeEEEEEECC
Confidence 467999999999999999999999999999999874 47899999999999999999999999999999999998
Q ss_pred CCCC
Q 021295 135 PKKP 138 (314)
Q Consensus 135 ~~~~ 138 (314)
....
T Consensus 83 ~~~~ 86 (111)
T 1whx_A 83 IGVF 86 (111)
T ss_dssp TTTT
T ss_pred CCcc
Confidence 7543
No 172
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.71 E-value=4.8e-17 Score=133.61 Aligned_cols=83 Identities=23% Similarity=0.530 Sum_probs=79.2
Q ss_pred cceEEEcCCCCCCCHHHHHHHHhccCCeEEEEEeecCCCCCcceEEEEEeCChHHHHHHHHhcCCeeeCCeEEEEeecCC
Q 021295 56 TKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVKKAEP 135 (314)
Q Consensus 56 ~~~l~V~nLp~~~~e~~l~~~F~~~G~v~~v~i~~~~~~g~~rG~afV~F~~~~~a~~a~~~l~~~~~~gr~l~V~~a~~ 135 (314)
.++|||+|||++++|++|+++|++||+|++|.|++++.++++++||||+|+++++|++|++.|++..|.+++|+|.++.+
T Consensus 2 ~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~ 81 (167)
T 1fxl_A 2 KTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARP 81 (167)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred cceEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCcceeEEEEEECCHHHHHHHHHHcCCCccCCceEEEEecCC
Confidence 57999999999999999999999999999999999998999999999999999999999999999999999999999887
Q ss_pred CCC
Q 021295 136 KKP 138 (314)
Q Consensus 136 ~~~ 138 (314)
...
T Consensus 82 ~~~ 84 (167)
T 1fxl_A 82 SSA 84 (167)
T ss_dssp CCG
T ss_pred Ccc
Confidence 643
No 173
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.71 E-value=2.9e-17 Score=128.04 Aligned_cols=79 Identities=13% Similarity=0.233 Sum_probs=71.7
Q ss_pred ceEEEcCC----CCCCCHHHHHHHHhccCCeEEEEEeecCCCCCcceEEEEEeCC----hHH----HHHHHH--hcCCee
Q 021295 57 KKIFVGGI----PSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDT----EQA----VDDLLA--KGNKLE 122 (314)
Q Consensus 57 ~~l~V~nL----p~~~~e~~l~~~F~~~G~v~~v~i~~~~~~g~~rG~afV~F~~----~~~----a~~a~~--~l~~~~ 122 (314)
.+|||+|| |+.++|++|+++|++||+|++|.++.|+.|++++|||||+|.+ +++ |.+|++ .|+++.
T Consensus 3 ~kI~VgnL~~~~~~~tte~~Lk~~Fs~fGeV~~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~lng~~ 82 (136)
T 2j8a_A 3 CEIVVYPAQDSTTTNIQDISIKNYFKKYGEISHFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESSGCF 82 (136)
T ss_dssp CEEEEEESSSSCCCCCCHHHHHHHHHTTSCCSEEEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTTTTCEE
T ss_pred cEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhcCCe
Confidence 68999999 9999999999999999999999999999999999999999996 333 888888 789999
Q ss_pred eCCeEEEEeecCC
Q 021295 123 LAGAQVEVKKAEP 135 (314)
Q Consensus 123 ~~gr~l~V~~a~~ 135 (314)
|++++|+|.....
T Consensus 83 I~Gr~irV~ln~~ 95 (136)
T 2j8a_A 83 IMGFKFEVILNKH 95 (136)
T ss_dssp ETTEEEEEEECCT
T ss_pred ecCcEEEEEECcc
Confidence 9999999987553
No 174
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.71 E-value=4.4e-17 Score=137.70 Aligned_cols=87 Identities=31% Similarity=0.613 Sum_probs=79.2
Q ss_pred CCCCCcceEEEcCCCCCCCHHHHHHHHhccCCeEEEEEeecCCCCCcceEEEEEeCChHHHHHHHHhcCCeeeCCeEEEE
Q 021295 51 SKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEV 130 (314)
Q Consensus 51 ~~~~~~~~l~V~nLp~~~~e~~l~~~F~~~G~v~~v~i~~~~~~g~~rG~afV~F~~~~~a~~a~~~l~~~~~~gr~l~V 130 (314)
.+..+.++|||+|||++++|++|+++|++||+|++|.|++++.++++++||||+|.++++|++||+. +...|.++.|.|
T Consensus 8 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~-~~~~~~g~~l~v 86 (196)
T 1l3k_A 8 KEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA-RPHKVDGRVVEP 86 (196)
T ss_dssp CCCGGGGEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHT-CSCEETTEECEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEEcCCCCCccceEEEEeCCHHHHHHHHhc-CCCEECCEEeee
Confidence 3455789999999999999999999999999999999999999999999999999999999999988 889999999999
Q ss_pred eecCCCCC
Q 021295 131 KKAEPKKP 138 (314)
Q Consensus 131 ~~a~~~~~ 138 (314)
.++.++..
T Consensus 87 ~~~~~~~~ 94 (196)
T 1l3k_A 87 KRAVSRED 94 (196)
T ss_dssp EECCC---
T ss_pred ecccCccc
Confidence 99877643
No 175
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.71 E-value=3.9e-17 Score=134.51 Aligned_cols=84 Identities=23% Similarity=0.425 Sum_probs=79.9
Q ss_pred CcceEEEcCCCCCCCHHHHHHHHhccCCeEEEEEeecCCCCCcceEEEEEeCChHHHHHHHHhcCCeeeCCeEEEEeecC
Q 021295 55 KTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVKKAE 134 (314)
Q Consensus 55 ~~~~l~V~nLp~~~~e~~l~~~F~~~G~v~~v~i~~~~~~g~~rG~afV~F~~~~~a~~a~~~l~~~~~~gr~l~V~~a~ 134 (314)
+.++|||+|||+++++++|+++|++||+|++|+|++++.++++++||||+|+++++|++|++.|++..|.+++|.|.++.
T Consensus 2 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~ 81 (168)
T 1b7f_A 2 SNTNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLNGITVRNKRLKVSYAR 81 (168)
T ss_dssp CCSEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEeCCCCccceEEEEEECCHHHHHHHHHhcCCCEeCCcEEEEEecC
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCCC
Q 021295 135 PKKP 138 (314)
Q Consensus 135 ~~~~ 138 (314)
+...
T Consensus 82 ~~~~ 85 (168)
T 1b7f_A 82 PGGE 85 (168)
T ss_dssp CCSS
T ss_pred CCcc
Confidence 7654
No 176
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.71 E-value=1.1e-16 Score=126.58 Aligned_cols=84 Identities=12% Similarity=0.187 Sum_probs=75.0
Q ss_pred CCcceEEEcCCCCCCCHHHHHHHHhccCCeEEEEEeecCCCCCcceE-EEEEeCChHHHHHHHHhcCCeeeCC--eEEEE
Q 021295 54 FKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGF-GFITFDTEQAVDDLLAKGNKLELAG--AQVEV 130 (314)
Q Consensus 54 ~~~~~l~V~nLp~~~~e~~l~~~F~~~G~v~~v~i~~~~~~g~~rG~-afV~F~~~~~a~~a~~~l~~~~~~g--r~l~V 130 (314)
.+...|||.||++.+||++|+++|++||+|++|+|+.+ .++| |||+|+++++|++|++.||+..|.+ ++|+|
T Consensus 26 s~VL~I~V~NL~~~vte~~L~~lFs~yG~V~~V~i~~~-----~~gfqAFVef~~~~~A~~Ai~~LnG~~i~g~~~~LrI 100 (130)
T 3zzy_A 26 SPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTK-----NNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRI 100 (130)
T ss_dssp CSEEEEEEESCCSCCCHHHHHHHHTTSSCEEEEEEEEE-----TTEEEEEEEESCHHHHHHHHHHHTTCEEETTEEEEEE
T ss_pred CceEEEEECCCCCCCCHHHHHHHHhCcCCEEEEEEEcC-----CCCcEEEEEECCHHHHHHHHHHcCCCeecCCCcEEEE
Confidence 45568899999999999999999999999999998864 3678 9999999999999999999999988 99999
Q ss_pred eecCCCCCCCCC
Q 021295 131 KKAEPKKPNLPQ 142 (314)
Q Consensus 131 ~~a~~~~~~~~~ 142 (314)
++++++......
T Consensus 101 ~~ak~~~l~v~~ 112 (130)
T 3zzy_A 101 DFSKLTSLNVKY 112 (130)
T ss_dssp EECSCSSCCCCC
T ss_pred EecCCCceeEEe
Confidence 999988665443
No 177
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=1.4e-17 Score=123.13 Aligned_cols=79 Identities=34% Similarity=0.624 Sum_probs=69.0
Q ss_pred CCcceEEEcCCCCCCCHHHHHHHHhccCCeEEEEEeecCCCCCcceEEEEEeCChHHHHHHHHhcCCeeeCCeEEEEeec
Q 021295 54 FKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVKKA 133 (314)
Q Consensus 54 ~~~~~l~V~nLp~~~~e~~l~~~F~~~G~v~~v~i~~~~~~g~~rG~afV~F~~~~~a~~a~~~l~~~~~~gr~l~V~~a 133 (314)
.++++|||+|||++++|++|+++|++||+|++|+|+.+ +++||||+|+++++|++|+.. .+.+.+++|+|+++
T Consensus 3 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~~~~~--~~~~~g~~l~v~~a 75 (88)
T 1wf0_A 3 SGSSGVFVGRCTGDMTEDELREFFSQYGDVMDVFIPKP-----FRAFAFVTFADDQIAQSLCGE--DLIIKGISVHISNA 75 (88)
T ss_dssp SCCCEEEEESCCSSSCHHHHHHHSTTTSCCCEEECCSS-----CCSCCEEECSCHHHHHHTTTC--EEEETTEEEEEECC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEEecC-----CCCEEEEEECCHHHHHHHhcC--CceeCCEEEEEEec
Confidence 35789999999999999999999999999999999865 689999999999999876443 46679999999999
Q ss_pred CCCCCC
Q 021295 134 EPKKPN 139 (314)
Q Consensus 134 ~~~~~~ 139 (314)
.++...
T Consensus 76 ~~~~~~ 81 (88)
T 1wf0_A 76 EPKHNS 81 (88)
T ss_dssp CCCCCC
T ss_pred CCCCCC
Confidence 877544
No 178
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.70 E-value=9.5e-18 Score=135.55 Aligned_cols=88 Identities=25% Similarity=0.384 Sum_probs=74.6
Q ss_pred CCCCcceEEEcCCCCCCCHHHHHHHHhccCCeEEEE--E---eecCCCCCcceEEEEEeCChHHHHHHHHhcCCeeeCCe
Q 021295 52 KDFKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQ--I---MRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGA 126 (314)
Q Consensus 52 ~~~~~~~l~V~nLp~~~~e~~l~~~F~~~G~v~~v~--i---~~~~~~g~~rG~afV~F~~~~~a~~a~~~l~~~~~~gr 126 (314)
...++++|||+|||+++++++|+++|++||.|+.+. + ++...++++++||||+|.+.++|++||+.||+..|.++
T Consensus 41 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~di~~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~ 120 (143)
T 3egn_A 41 PGEPNCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLMKEGRMKGQAFIGLPNEKAAAKALKEANGYVLFGK 120 (143)
T ss_dssp CCSCCSEEEEEEECTTCCHHHHHHHHGGGCCTTCHHHHHHCEEEEEEETTTEEEEEEECSSHHHHHHHHHHHTTBEETTE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcccccccceeeEEeccCCCcccEEEEEeCCHHHHHHHHHHhCCCEeCCc
Confidence 345678999999999999999999999999987641 1 11124678999999999999999999999999999999
Q ss_pred EEEEeecCCCCCC
Q 021295 127 QVEVKKAEPKKPN 139 (314)
Q Consensus 127 ~l~V~~a~~~~~~ 139 (314)
+|.|.+|.+..+.
T Consensus 121 ~l~V~~a~~~~~~ 133 (143)
T 3egn_A 121 PMVVQFARSARPK 133 (143)
T ss_dssp ECEEEECCCSCC-
T ss_pred EEEEEECCCCCCc
Confidence 9999999876543
No 179
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.70 E-value=5.2e-17 Score=126.18 Aligned_cols=80 Identities=25% Similarity=0.457 Sum_probs=70.2
Q ss_pred CCcceEEEcCCCCCCCHHHHHHHHhccCCeEEEEEeecCCC---CCcceEEEEEeCChHHHHHHHHhcCCeeeCCeEEEE
Q 021295 54 FKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHST---SRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEV 130 (314)
Q Consensus 54 ~~~~~l~V~nLp~~~~e~~l~~~F~~~G~v~~v~i~~~~~~---g~~rG~afV~F~~~~~a~~a~~~l~~~~~~gr~l~V 130 (314)
..+++|||+|||++++|++|+++|++||+|+ +.++.++.+ +++++||||+|+++++|++||+.|+ .++++.|.+
T Consensus 6 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~-~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~~--~~~G~~~~~ 82 (114)
T 2dnl_A 6 SGSRKVFVGGLPPDIDEDEITASFRRFGPLV-VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDACL--EEDGKLYLC 82 (114)
T ss_dssp SCCCCEEEECCCTTCCHHHHHHHTTTTCCCC-EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHSE--EETTEEEEE
T ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHhcCCEE-EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhhh--hcCCcEEEe
Confidence 4578999999999999999999999999999 888888777 6999999999999999999999983 477887777
Q ss_pred eecCCC
Q 021295 131 KKAEPK 136 (314)
Q Consensus 131 ~~a~~~ 136 (314)
..+.+.
T Consensus 83 ~~~~~~ 88 (114)
T 2dnl_A 83 VSSPTI 88 (114)
T ss_dssp ECCSSS
T ss_pred ccCCCc
Confidence 655443
No 180
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.69 E-value=2.9e-16 Score=123.43 Aligned_cols=80 Identities=16% Similarity=0.247 Sum_probs=70.8
Q ss_pred CcceEEEcCCCCCCCHHHHHHHHhccCCeEEEEEeecCCCCCcceE-EEEEeCChHHHHHHHHhcCCeeeCC--eEEEEe
Q 021295 55 KTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGF-GFITFDTEQAVDDLLAKGNKLELAG--AQVEVK 131 (314)
Q Consensus 55 ~~~~l~V~nLp~~~~e~~l~~~F~~~G~v~~v~i~~~~~~g~~rG~-afV~F~~~~~a~~a~~~l~~~~~~g--r~l~V~ 131 (314)
....|||.||++.+++++|+++|++||+|++|+|+.. .+| |||+|++.++|++|++.||+.+|.+ ++|+|+
T Consensus 24 ~vl~l~V~NL~~~vt~~~L~~~Fs~yG~V~~v~i~~~------~Gf~aFVef~~~~~A~~A~~~LnG~~i~g~~~~l~V~ 97 (124)
T 2e5i_A 24 KVLLLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFKR------NGIQAMVEFESVLCAQKAKAALNGADIYAGCCTLKIE 97 (124)
T ss_dssp SEEEEEEESCCSCCCHHHHHHHHTTTSCEEEEEEEES------SSEEEEEEESSHHHHHHHHHHHTTCCCBTTBSEEEEE
T ss_pred cEEEEEEcCcCCCCCHHHHHHHHHhcCCEEEEEEEeC------CCCEEEEEECCHHHHHHHHHHhCCCEecCCCeEEEEE
Confidence 3445789999999999999999999999999999752 276 9999999999999999999999987 699999
Q ss_pred ecCCCCCCC
Q 021295 132 KAEPKKPNL 140 (314)
Q Consensus 132 ~a~~~~~~~ 140 (314)
+|+++....
T Consensus 98 ~Ak~~~l~v 106 (124)
T 2e5i_A 98 YARPTRLNV 106 (124)
T ss_dssp CCSCSCCCC
T ss_pred EecCCccee
Confidence 999886544
No 181
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.68 E-value=1.2e-16 Score=117.63 Aligned_cols=72 Identities=24% Similarity=0.529 Sum_probs=67.0
Q ss_pred CCcceEEEcCCCCCCCHHHHHHHHhcc----C-------CeEEEEEeecCCCCCcceEEEEEeCChHHHHHHHHhcCCee
Q 021295 54 FKTKKIFVGGIPSSVNEDEFKDFFMQF----G-------DVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLE 122 (314)
Q Consensus 54 ~~~~~l~V~nLp~~~~e~~l~~~F~~~----G-------~v~~v~i~~~~~~g~~rG~afV~F~~~~~a~~a~~~l~~~~ 122 (314)
.+.++|||+|||+++++++|+++|++| + +|++|+|+++ ++||||+|+++++|++|+ .||+..
T Consensus 4 ~~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~~------kg~afV~f~~~~~a~~A~-~l~g~~ 76 (87)
T 2hzc_A 4 GSARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQD------KNFAFLEFRSVDETTQAM-AFDGII 76 (87)
T ss_dssp GGGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECSS------SSEEEEEESSHHHHHHHG-GGTTCE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEecCC------CcEEEEEcCCHHHHHHHH-hcCCCE
Confidence 457899999999999999999999999 8 8999998854 789999999999999999 999999
Q ss_pred eCCeEEEEee
Q 021295 123 LAGAQVEVKK 132 (314)
Q Consensus 123 ~~gr~l~V~~ 132 (314)
|.+++|+|+.
T Consensus 77 ~~g~~l~V~r 86 (87)
T 2hzc_A 77 FQGQSLKIRR 86 (87)
T ss_dssp ETTEECEEEC
T ss_pred ECCeEEEEeC
Confidence 9999999974
No 182
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.68 E-value=5.3e-17 Score=141.55 Aligned_cols=112 Identities=20% Similarity=0.299 Sum_probs=80.9
Q ss_pred HHHHHHH-ccCccCCcEEEEeecCCCCCCCCCCCCcceEEEcCCCCCC---------CHHHHHHHHhccCCeEEEEEeec
Q 021295 22 VVDKVIE-DTHIINGKQVEIKRTIPKGAVGSKDFKTKKIFVGGIPSSV---------NEDEFKDFFMQFGDVQEHQIMRD 91 (314)
Q Consensus 22 ~a~~A~~-~~~~i~g~~i~v~~~~~~~~~~~~~~~~~~l~V~nLp~~~---------~e~~l~~~F~~~G~v~~v~i~~~ 91 (314)
.+..+|. ...++-++....+...........+.+.++|||+||+.++ +|++|+++|++||+|++|+|+.+
T Consensus 99 ~~~~~~~~~~~D~fGr~k~~~~~d~~~g~gs~~~~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG~I~~v~v~~~ 178 (240)
T 3u1l_A 99 IGKLALRTEVLDCFGREKFADYREDMGGIGSFRKKNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLGDIDRIRYVES 178 (240)
T ss_dssp HHHHHHHCSSBCTTSSBCGGGTC---------CCCCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTSCEEEEEEEGG
T ss_pred hhhhcccccCcccccchhcccchhcccCcCccccCCceeecCCCChhhhcccccccCcHHHHHHHHHccCCEEEEEEECC
Confidence 3334444 3344555544333322222223345678999999999998 79999999999999999999853
Q ss_pred CCCCCcceEEEEEeCChHHHHHHHHhcCCeee------------CCeEEEEeecCCCCCC
Q 021295 92 HSTSRSRGFGFITFDTEQAVDDLLAKGNKLEL------------AGAQVEVKKAEPKKPN 139 (314)
Q Consensus 92 ~~~g~~rG~afV~F~~~~~a~~a~~~l~~~~~------------~gr~l~V~~a~~~~~~ 139 (314)
|+||||+|++.++|++|++.|++..| .++.|.|++|.+...+
T Consensus 179 ------kG~AFV~F~~~~~Ae~A~~am~g~~l~~~~~~e~~~~~~gr~L~V~wA~~~pnp 232 (240)
T 3u1l_A 179 ------KNCGFVKFKYQANAEFAKEAMSNQTLLLPSDKEWDDRREGTGLLVKWANEDPDP 232 (240)
T ss_dssp ------GTEEEEEESSHHHHHHHHHHHTTCCCCCTTSTTGGGGGGSCCCEEEECC-----
T ss_pred ------CCEEEEEeCCHHHHHHHHHHhCCCEEeccccccccccCCCCEEEEEEccCCCCH
Confidence 78999999999999999999999999 8999999999876543
No 183
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.67 E-value=2.9e-16 Score=128.78 Aligned_cols=81 Identities=19% Similarity=0.384 Sum_probs=75.5
Q ss_pred ceEEEcCCCCCCCHHHHHHHHhccCCeEEEEEeecCCCCCcceEEEEEeCChHHHHHHHHhcCCeeeCCeEEEEeecCCC
Q 021295 57 KKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVKKAEPK 136 (314)
Q Consensus 57 ~~l~V~nLp~~~~e~~l~~~F~~~G~v~~v~i~~~~~~g~~rG~afV~F~~~~~a~~a~~~l~~~~~~gr~l~V~~a~~~ 136 (314)
++|||.|||+++++++|+++|++||+|++|+|++++ ++++++||||+|+++++|++|++.|++..|.+++|.|.++.+.
T Consensus 1 R~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~-~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~~~~~ 79 (166)
T 3md3_A 1 RVLYVGNLDKAITEDILKQYFQVGGPIANIKIMIDK-NNKNVNYAFVEYHQSHDANIALQTLNGKQIENNIVKINWAFQS 79 (166)
T ss_dssp CEEEEEEEETTCCHHHHHHHHGGGSCEEEEEEECCC-C-CCEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCC
T ss_pred CEEEECCCCCcCCHHHHHHHHHhcCCeEEEEEEECC-CCCCCCEEEEEeCCHHHHHHHHHHcCCCccCCCeeEEEEcCCC
Confidence 589999999999999999999999999999999996 4679999999999999999999999999999999999999876
Q ss_pred CC
Q 021295 137 KP 138 (314)
Q Consensus 137 ~~ 138 (314)
..
T Consensus 80 ~~ 81 (166)
T 3md3_A 80 QQ 81 (166)
T ss_dssp CC
T ss_pred CC
Confidence 54
No 184
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.66 E-value=1.7e-16 Score=136.07 Aligned_cols=83 Identities=23% Similarity=0.468 Sum_probs=75.6
Q ss_pred CcceEEEcCCCCCCCHHHHHHHHhccCCeEEEEEeecCCCCCcceEEEEEeCChHHHHHHHHhcCCeeeCCeEEEEeecC
Q 021295 55 KTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVKKAE 134 (314)
Q Consensus 55 ~~~~l~V~nLp~~~~e~~l~~~F~~~G~v~~v~i~~~~~~g~~rG~afV~F~~~~~a~~a~~~l~~~~~~gr~l~V~~a~ 134 (314)
+.++|||.|||++++|++|+++|++||+|++|+|++++.++++++||||+|+++++|++||+.||+..|.+++|+|.++.
T Consensus 27 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~~~ 106 (216)
T 2qfj_A 27 IMSRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRPS 106 (216)
T ss_dssp HHTEEEEECCCTTCCHHHHHHHHGGGSCEEEEEECCC-CC-CCCSEEEEEESSHHHHHHHHHHHSSCCCC-CCCEEECCS
T ss_pred cCCEEEEECCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccCceEEEEeCCHHHHHHHHHHccCCeeCCeeEEEecCC
Confidence 46799999999999999999999999999999999999899999999999999999999999999999999999998876
Q ss_pred CCC
Q 021295 135 PKK 137 (314)
Q Consensus 135 ~~~ 137 (314)
...
T Consensus 107 ~~~ 109 (216)
T 2qfj_A 107 NIG 109 (216)
T ss_dssp CCG
T ss_pred Ccc
Confidence 653
No 185
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.66 E-value=4e-16 Score=119.32 Aligned_cols=82 Identities=16% Similarity=0.102 Sum_probs=73.3
Q ss_pred CCcceEEEcCCCC-----CCCHHHHHHHHhccCCeEEEEEeecCCC-CCcceEEEEEeCChHHHHHHHHhcCCeeeCCeE
Q 021295 54 FKTKKIFVGGIPS-----SVNEDEFKDFFMQFGDVQEHQIMRDHST-SRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQ 127 (314)
Q Consensus 54 ~~~~~l~V~nLp~-----~~~e~~l~~~F~~~G~v~~v~i~~~~~~-g~~rG~afV~F~~~~~a~~a~~~l~~~~~~gr~ 127 (314)
.++++|+|.||.. +.++++|+++|++||+|++|.|++++.+ ++++|||||+|+++++|++|++.||+..|.+++
T Consensus 6 ~~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~~Gr~ 85 (105)
T 2pe8_A 6 CPTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYFGGRV 85 (105)
T ss_dssp SCCSEEEEESSSCSCCC---CHHHHHHHGGGGSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCEETTEE
T ss_pred CCCCEEEEEcCCChHHhhHHHHHHHHHHHHhcCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCEECCcE
Confidence 4578999999963 2378999999999999999999998654 688999999999999999999999999999999
Q ss_pred EEEeecCC
Q 021295 128 VEVKKAEP 135 (314)
Q Consensus 128 l~V~~a~~ 135 (314)
|.|.++.+
T Consensus 86 i~v~~a~~ 93 (105)
T 2pe8_A 86 VKACFYNL 93 (105)
T ss_dssp CEEEECCH
T ss_pred EEEEEcCH
Confidence 99999875
No 186
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.66 E-value=3.9e-16 Score=115.12 Aligned_cols=77 Identities=10% Similarity=0.176 Sum_probs=67.9
Q ss_pred Ccce-EEEcCCCCCCCHHHH----HHHHhcc-CCeEEEEEeecCCCCCcceEEEEEeCChHHHHHHHHhcCCeeeCCeEE
Q 021295 55 KTKK-IFVGGIPSSVNEDEF----KDFFMQF-GDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQV 128 (314)
Q Consensus 55 ~~~~-l~V~nLp~~~~e~~l----~~~F~~~-G~v~~v~i~~~~~~g~~rG~afV~F~~~~~a~~a~~~l~~~~~~gr~l 128 (314)
+..+ |||.|||+.+++++| +++|++| |+|.+| ++ |+|||+|++.++|++|++.|++.+|.+|+|
T Consensus 7 p~~T~lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~V-------tg---G~AfV~F~~~esA~~A~~~l~G~~l~gr~i 76 (96)
T 2diu_A 7 GCHTLLYVYNLPANKDGKSVSNRLRRLSDNCGGKVLSI-------TG---CSAILRFINQDSAERAQKRMENEDVFGNRI 76 (96)
T ss_dssp CSSEEEEEESCCTTSCHHHHHHHHHHHHHTTTCCEEEC-------CT---TCEEEEESSHHHHHHHHHHHTTCCSSSSCC
T ss_pred CcceEEEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEE-------ec---CEEEEEECCHHHHHHHHHHhcCCccCCceE
Confidence 4555 999999999999885 5899999 599988 22 899999999999999999999999999999
Q ss_pred EEeecCCCCCCCC
Q 021295 129 EVKKAEPKKPNLP 141 (314)
Q Consensus 129 ~V~~a~~~~~~~~ 141 (314)
+|.+|+.+.....
T Consensus 77 ~v~~A~~~sd~~~ 89 (96)
T 2diu_A 77 IVSFTPKNRELCE 89 (96)
T ss_dssp EEESSCCSCCCCC
T ss_pred EEEecCCCcceeE
Confidence 9999998876543
No 187
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.65 E-value=2.7e-16 Score=123.43 Aligned_cols=80 Identities=19% Similarity=0.321 Sum_probs=71.8
Q ss_pred CCCCcceEEEcCCCCCCCHHHHHHHHhccCCeEEEEEeecCCCCCcceEEEEEeCChHHHHHHHHhcCCeeeCCeEEEEe
Q 021295 52 KDFKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVK 131 (314)
Q Consensus 52 ~~~~~~~l~V~nLp~~~~e~~l~~~F~~~G~v~~v~i~~~~~~g~~rG~afV~F~~~~~a~~a~~~l~~~~~~gr~l~V~ 131 (314)
...+.++|||+|| ++++++|+++|++||+|++|.|. ++++||||+|++.++|++||+.||+..|.+++|+|+
T Consensus 35 ~~~~~~~lfVgnl--~~te~~L~~~F~~~G~I~~v~i~------~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~V~ 106 (121)
T 2bz2_A 35 APRKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD------PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVN 106 (121)
T ss_dssp CCCCCCEEEEECS--SCCHHHHHHHHSTTCCCSCEEEE------TTTTEEEEECSSHHHHHHHHHHHTTCBCSSCBCEEE
T ss_pred CCCCCCEEEEcCC--CCCHHHHHHHHHccCCEEEEEEe------CCCCEEEEEECCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 3456789999996 69999999999999999999986 468899999999999999999999999999999999
Q ss_pred ecCCCCCC
Q 021295 132 KAEPKKPN 139 (314)
Q Consensus 132 ~a~~~~~~ 139 (314)
++.++...
T Consensus 107 ~a~~~~~~ 114 (121)
T 2bz2_A 107 IARKQPML 114 (121)
T ss_dssp ECCSSCC-
T ss_pred EeCCCCCC
Confidence 99877543
No 188
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.64 E-value=6.4e-16 Score=132.47 Aligned_cols=78 Identities=21% Similarity=0.336 Sum_probs=72.7
Q ss_pred CcceEEEcCCC-CCCCHHHHHHHHhccCCeEEEEEeecCCCCCcceEEEEEeCChHHHHHHHHhcCCeeeCCeEEEEeec
Q 021295 55 KTKKIFVGGIP-SSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVKKA 133 (314)
Q Consensus 55 ~~~~l~V~nLp-~~~~e~~l~~~F~~~G~v~~v~i~~~~~~g~~rG~afV~F~~~~~a~~a~~~l~~~~~~gr~l~V~~a 133 (314)
+.++|||+||| +++++++|+++|++||+|++|+|+++ .++||||+|+++++|++||+.||+..|.+++|.|.++
T Consensus 3 ~~~~l~V~nL~~~~~~~~~L~~~F~~~G~v~~v~i~~~-----~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~s 77 (205)
T 3tyt_A 3 DSPVLMVYGLDQSKMNCDRVFNVFCLYGNVEKVKFMKS-----KPGAAMVEMADGYAVDRAITHLNNNFMFGQKMNVCVS 77 (205)
T ss_dssp CCSEEEEECCCTTTCCHHHHHHHHTTTSCEEEEEECTT-----STTCEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCEEEEeCCCcccCCHHHHHHHHHhcCCeEEEEEecC-----CCCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEc
Confidence 46899999999 89999999999999999999999876 3789999999999999999999999999999999998
Q ss_pred CCCC
Q 021295 134 EPKK 137 (314)
Q Consensus 134 ~~~~ 137 (314)
+.+.
T Consensus 78 ~~~~ 81 (205)
T 3tyt_A 78 KQPA 81 (205)
T ss_dssp SCSC
T ss_pred cCCc
Confidence 7654
No 189
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.63 E-value=5.6e-16 Score=128.29 Aligned_cols=84 Identities=29% Similarity=0.540 Sum_probs=75.5
Q ss_pred CcceEEEcCCCCCCCHHHHHHHHhccCCeEEEEEeecCCCC--CcceEEEEEeCChHHHHHHHHhcCCeeeC---CeEEE
Q 021295 55 KTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTS--RSRGFGFITFDTEQAVDDLLAKGNKLELA---GAQVE 129 (314)
Q Consensus 55 ~~~~l~V~nLp~~~~e~~l~~~F~~~G~v~~v~i~~~~~~g--~~rG~afV~F~~~~~a~~a~~~l~~~~~~---gr~l~ 129 (314)
+.++|||+|||++++|++|+++|++||+|++|+|++++.++ ++++||||+|+++++|++|++.|+...+. .++|.
T Consensus 2 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~~~~ 81 (175)
T 3nmr_A 2 DAIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNMKVLPGMHHPIQ 81 (175)
T ss_dssp CCEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEECSSSSCEEEEEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCE
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCCCcceEEEEEECCHHHHHHHHHHhcCcEEccCCccceE
Confidence 46899999999999999999999999999999999998886 89999999999999999999999987765 57788
Q ss_pred EeecCCCCC
Q 021295 130 VKKAEPKKP 138 (314)
Q Consensus 130 V~~a~~~~~ 138 (314)
+.++.+...
T Consensus 82 ~~~~~~~~~ 90 (175)
T 3nmr_A 82 MKPADSEKN 90 (175)
T ss_dssp EEECGGGCC
T ss_pred Ecccccccc
Confidence 887765543
No 190
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.63 E-value=6.2e-16 Score=127.23 Aligned_cols=80 Identities=35% Similarity=0.767 Sum_probs=74.3
Q ss_pred CcceEEEcCCCCCCCHHHHHHHHhccCCeEEEEEeecCCCCCcceEEEEEeCChHHHHHHHHhcCCeeeCCeEEEEeecC
Q 021295 55 KTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVKKAE 134 (314)
Q Consensus 55 ~~~~l~V~nLp~~~~e~~l~~~F~~~G~v~~v~i~~~~~~g~~rG~afV~F~~~~~a~~a~~~l~~~~~~gr~l~V~~a~ 134 (314)
++++|||+|||++++|++|+++|++||+|++|+|++++.++++++||||+|+++++|++||+. ...|.++.|.|.++.
T Consensus 2 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~--~~~~~g~~i~v~~~~ 79 (167)
T 2cjk_A 2 ESCKMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLSFEKPSSVDEVVKT--QHILDGKVIDPKRAI 79 (167)
T ss_dssp GGGEEEECSCCTTCCHHHHHHHHTTTCCEEEEECCCCTTTSSCCSCEEEEESSTHHHHHHHHS--CCEETTEECCCEECC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEECCCCCCccceEEEEEccHHHHHHHHhc--ccccCCeEccccccc
Confidence 468999999999999999999999999999999999999999999999999999999999996 468899999998876
Q ss_pred CC
Q 021295 135 PK 136 (314)
Q Consensus 135 ~~ 136 (314)
++
T Consensus 80 ~~ 81 (167)
T 2cjk_A 80 PR 81 (167)
T ss_dssp CH
T ss_pred ch
Confidence 54
No 191
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.62 E-value=4.9e-15 Score=114.56 Aligned_cols=84 Identities=10% Similarity=0.216 Sum_probs=72.4
Q ss_pred CCCCcceEEEcCCCCCCC-----------HHHHHHHHhccCCeEEEEEeecCCCCCcceEEEEEeCChHHHHHHHHhcCC
Q 021295 52 KDFKTKKIFVGGIPSSVN-----------EDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNK 120 (314)
Q Consensus 52 ~~~~~~~l~V~nLp~~~~-----------e~~l~~~F~~~G~v~~v~i~~~~~~g~~rG~afV~F~~~~~a~~a~~~l~~ 120 (314)
...++++|+|.||....+ +++|+++|++||+|++|.| .++ .++|||||+|+++++|++||+.||+
T Consensus 11 ~~~~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i-~~~---~~~G~afV~f~~~~~A~~Ai~~lng 86 (112)
T 2dit_A 11 RMRHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLL-FDR---HPDGVASVSFRDPEEADYCIQTLDG 86 (112)
T ss_dssp CCCSCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEE-ETT---CTTCEEEEECSCHHHHHHHHHHSTT
T ss_pred CCCCceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEE-ecC---CCCEEEEEEECCHHHHHHHHHHcCC
Confidence 455789999999955432 6899999999999999966 554 3799999999999999999999999
Q ss_pred eeeCCeEEEEeecCCCCCC
Q 021295 121 LELAGAQVEVKKAEPKKPN 139 (314)
Q Consensus 121 ~~~~gr~l~V~~a~~~~~~ 139 (314)
..|.+++|+|+++.++...
T Consensus 87 ~~~~gr~l~v~~a~~~~~~ 105 (112)
T 2dit_A 87 RWFGGRQITAQAWDGTTDY 105 (112)
T ss_dssp CEETTEECEEEECCSCCCS
T ss_pred CEECCcEEEEEEeCCCCCc
Confidence 9999999999999886544
No 192
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.61 E-value=3e-15 Score=134.01 Aligned_cols=84 Identities=18% Similarity=0.392 Sum_probs=76.6
Q ss_pred CCCCcceEEEcCCCCCCCHHHHH----HHHhccCCeEEEEEeecCCCCCcceEEEEEeCChHHHHHHHHhcCCeeeCCeE
Q 021295 52 KDFKTKKIFVGGIPSSVNEDEFK----DFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQ 127 (314)
Q Consensus 52 ~~~~~~~l~V~nLp~~~~e~~l~----~~F~~~G~v~~v~i~~~~~~g~~rG~afV~F~~~~~a~~a~~~l~~~~~~gr~ 127 (314)
+..++++|||+|||++++|++|+ ++|++||+|++|+|++ ++++++||||+|++.++|++||+.||+..|.+++
T Consensus 5 ~~~~~~~l~V~nlp~~~~~~~l~~~L~~~F~~~G~i~~v~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 81 (282)
T 3pgw_A 5 ETRPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSR---SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKP 81 (282)
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcC---CCCcceEEEEEECCHHHHHHHHHHhcCCeeCCcE
Confidence 34568999999999999999977 8999999999999886 6778999999999999999999999999999999
Q ss_pred EEEeecCCCCC
Q 021295 128 VEVKKAEPKKP 138 (314)
Q Consensus 128 l~V~~a~~~~~ 138 (314)
|+|+++..+..
T Consensus 82 l~v~~a~~~~~ 92 (282)
T 3pgw_A 82 MRIQYAKTDSD 92 (282)
T ss_pred EEEEEeccCcc
Confidence 99999976553
No 193
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.59 E-value=3.7e-15 Score=129.69 Aligned_cols=82 Identities=13% Similarity=0.235 Sum_probs=75.5
Q ss_pred CCCCcceEEEcCCCC-CCCHHHHHHHHhccCCeEEEEEeecCCCCCcceEEEEEeCChHHHHHHHHhcCCeeeCCeEEEE
Q 021295 52 KDFKTKKIFVGGIPS-SVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEV 130 (314)
Q Consensus 52 ~~~~~~~l~V~nLp~-~~~e~~l~~~F~~~G~v~~v~i~~~~~~g~~rG~afV~F~~~~~a~~a~~~l~~~~~~gr~l~V 130 (314)
...+.++|||+|||+ ++++++|+++|++||+|++|+|++++ ++||||+|.++++|++||+.|++..|.+++|.|
T Consensus 30 ~~~~~~~l~V~nLp~~~~te~~L~~~F~~~G~i~~v~i~~~~-----~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~v 104 (229)
T 2adc_A 30 AGAGNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK-----KENALVQMADGNQAQLAMSHLNGHKLHGKPIRI 104 (229)
T ss_dssp GCCCCSEEEEESCCTTTCCHHHHHHHHHHHTCEEEEEECCTT-----SCCEEEEESCHHHHHHHHHHHTTCBCSSSBCEE
T ss_pred CCCCCCEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEEEECC-----CCEEEEEECCHHHHHHHHHHhCCCeECCeEEEE
Confidence 345678999999999 99999999999999999999999874 789999999999999999999999999999999
Q ss_pred eecCCCCC
Q 021295 131 KKAEPKKP 138 (314)
Q Consensus 131 ~~a~~~~~ 138 (314)
.++.++..
T Consensus 105 ~~a~~~~~ 112 (229)
T 2adc_A 105 TLSKHQNV 112 (229)
T ss_dssp ECCSCCCC
T ss_pred EEecCccc
Confidence 99987643
No 194
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.57 E-value=6.1e-15 Score=112.73 Aligned_cols=82 Identities=17% Similarity=0.220 Sum_probs=71.5
Q ss_pred CCcceEEEcCC--CCCCC--------HHHHHHHHhccCCeEEEEEeecCCC--CCcceEEEEEeCChHHHHHHHHhcCCe
Q 021295 54 FKTKKIFVGGI--PSSVN--------EDEFKDFFMQFGDVQEHQIMRDHST--SRSRGFGFITFDTEQAVDDLLAKGNKL 121 (314)
Q Consensus 54 ~~~~~l~V~nL--p~~~~--------e~~l~~~F~~~G~v~~v~i~~~~~~--g~~rG~afV~F~~~~~a~~a~~~l~~~ 121 (314)
.+++.|.|.|+ |.++. ++||+++|++||+|++|.|++++.+ .+++|+|||+|+++++|++|++.||+.
T Consensus 3 ~ps~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG~ 82 (105)
T 3v4m_A 3 HPTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGR 82 (105)
T ss_dssp SCCSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTTC
T ss_pred CCCeEEEEECCCCHHHccChHHHHHHHHHHHHHHHccCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCCC
Confidence 35788999997 43443 3799999999999999999988765 468999999999999999999999999
Q ss_pred eeCCeEEEEeecCC
Q 021295 122 ELAGAQVEVKKAEP 135 (314)
Q Consensus 122 ~~~gr~l~V~~a~~ 135 (314)
.|.+|+|+|.++..
T Consensus 83 ~f~GR~i~v~~~~~ 96 (105)
T 3v4m_A 83 KFANRVVVTKYCDP 96 (105)
T ss_dssp EETTEECEEEEECH
T ss_pred EeCCCEEEEEEeCH
Confidence 99999999998764
No 195
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.56 E-value=9.3e-15 Score=129.68 Aligned_cols=81 Identities=27% Similarity=0.508 Sum_probs=73.9
Q ss_pred CCCCCCcceEEEcCCCCCCCHHHHHHHHhccCCeEEEEEeecCCCCCcceEEEEEeCChHHHHHHHHhcCCeeeCCeEEE
Q 021295 50 GSKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVE 129 (314)
Q Consensus 50 ~~~~~~~~~l~V~nLp~~~~e~~l~~~F~~~G~v~~v~i~~~~~~g~~rG~afV~F~~~~~a~~a~~~l~~~~~~gr~l~ 129 (314)
.....+.++|||+|||+++|+++|+++|++||+|+.|.|.++ ++||||+|.++++|++||+.||+..|.+++|+
T Consensus 16 ~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~------kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~ 89 (261)
T 3sde_A 16 EKTYTQRCRLFVGNLPTDITEEDFKRLFERYGEPSEVFINRD------RGFGFIRLESRTLAEIAKAELDGTILKSRPLR 89 (261)
T ss_dssp CCSSCGGGEEEEESCCTTCCHHHHHHHTGGGCCCSEEEEETT------TTEEEEECSSHHHHHHHHHHHTTCEETTEECE
T ss_pred CCCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEeCC------CcEEEEEECCHHHHHHHHHHcCCcEECCceeE
Confidence 344567789999999999999999999999999999999754 68999999999999999999999999999999
Q ss_pred EeecCCC
Q 021295 130 VKKAEPK 136 (314)
Q Consensus 130 V~~a~~~ 136 (314)
|.++.+.
T Consensus 90 v~~a~~~ 96 (261)
T 3sde_A 90 IRFATHG 96 (261)
T ss_dssp EEECCCS
T ss_pred eeecccC
Confidence 9998764
No 196
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.56 E-value=1.9e-15 Score=125.48 Aligned_cols=85 Identities=16% Similarity=0.359 Sum_probs=74.2
Q ss_pred CCCCcceEEEcCCCCCCCHHHHHHHHhccCCeEEEEEeecCCCCCcceEEEEEeCChHHHHHHHHhcCCeeeCCeEEEEe
Q 021295 52 KDFKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVK 131 (314)
Q Consensus 52 ~~~~~~~l~V~nLp~~~~e~~l~~~F~~~G~v~~v~i~~~~~~g~~rG~afV~F~~~~~a~~a~~~l~~~~~~gr~l~V~ 131 (314)
+..+.++|||+|||+++++++|+++|++|+.|.. .++.+..++++++||||+|+++++|++||+ ||+..|.+++|.|.
T Consensus 9 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~g~~~~-~~~~~~~~~~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~v~ 86 (175)
T 1fje_B 9 ESTTPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKLE 86 (175)
T ss_dssp SCSSSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGEEETTEEEEEE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEEECCCCccccEEEEEECCHHHHHHHHh-cCCCEeCCeEEEEe
Confidence 4556899999999999999999999999988766 344445678899999999999999999995 89999999999999
Q ss_pred ecCCCCC
Q 021295 132 KAEPKKP 138 (314)
Q Consensus 132 ~a~~~~~ 138 (314)
++.++..
T Consensus 87 ~~~~~~~ 93 (175)
T 1fje_B 87 KPKGRDS 93 (175)
T ss_dssp CCCCSSC
T ss_pred cCCCccc
Confidence 9987644
No 197
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.55 E-value=6.5e-15 Score=124.84 Aligned_cols=80 Identities=14% Similarity=0.254 Sum_probs=73.9
Q ss_pred CcceEEEcCCCC-CCCHHHHHHHHhccCCeEEEEEeecCCCCCcceEEEEEeCChHHHHHHHHhcCCeeeCCeEEEEeec
Q 021295 55 KTKKIFVGGIPS-SVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVKKA 133 (314)
Q Consensus 55 ~~~~l~V~nLp~-~~~e~~l~~~F~~~G~v~~v~i~~~~~~g~~rG~afV~F~~~~~a~~a~~~l~~~~~~gr~l~V~~a 133 (314)
..++|||+|||+ ++++++|+++|++||+|++|+|++++ ++||||+|+++++|++||+.||+..|.+++|.|.++
T Consensus 2 ~~~~l~v~nlp~~~~~~~~l~~~F~~~G~i~~v~i~~~~-----~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~a 76 (198)
T 1qm9_A 2 GNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK-----KENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLS 76 (198)
T ss_dssp CCCEEEEECCCSSSCCHHHHHHHHHTTCCCSEEECSTTC-----SSCCEEECTTTHHHHHHHHHHTTCCCSSCCCEEEEC
T ss_pred CCcEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCeecCeEEEEEEe
Confidence 358999999999 99999999999999999999999874 789999999999999999999999999999999999
Q ss_pred CCCCCC
Q 021295 134 EPKKPN 139 (314)
Q Consensus 134 ~~~~~~ 139 (314)
......
T Consensus 77 ~~~~~~ 82 (198)
T 1qm9_A 77 KHQNVQ 82 (198)
T ss_dssp CCCSCC
T ss_pred cCCCcC
Confidence 876543
No 198
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=99.54 E-value=1.9e-14 Score=112.17 Aligned_cols=81 Identities=15% Similarity=0.155 Sum_probs=70.4
Q ss_pred CcceEEEcCCCC--C---CCHHHHHHHHhccCCeEEEEEeecCC----CCCcceEEEEEeCChHHHHHHHHhcCCeeeCC
Q 021295 55 KTKKIFVGGIPS--S---VNEDEFKDFFMQFGDVQEHQIMRDHS----TSRSRGFGFITFDTEQAVDDLLAKGNKLELAG 125 (314)
Q Consensus 55 ~~~~l~V~nLp~--~---~~e~~l~~~F~~~G~v~~v~i~~~~~----~g~~rG~afV~F~~~~~a~~a~~~l~~~~~~g 125 (314)
++++|+|.|+-. + -.++||+++|++||+|++|.|++++. +.+++|++||+|+++++|++|++.||+.+|.+
T Consensus 19 ps~vl~L~Nm~~~~el~ddleedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f~G 98 (118)
T 3ue2_A 19 ESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAG 98 (118)
T ss_dssp SCCEEEEESCSCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHHHHHhccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCEECC
Confidence 567888888742 2 23689999999999999999999865 45678999999999999999999999999999
Q ss_pred eEEEEeecCC
Q 021295 126 AQVEVKKAEP 135 (314)
Q Consensus 126 r~l~V~~a~~ 135 (314)
|+|.|.++..
T Consensus 99 R~i~v~~~~~ 108 (118)
T 3ue2_A 99 RKVVAEVYDQ 108 (118)
T ss_dssp EECEEEEECH
T ss_pred cEEEEEEcCh
Confidence 9999998764
No 199
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.54 E-value=8.6e-14 Score=105.20 Aligned_cols=67 Identities=13% Similarity=0.254 Sum_probs=59.0
Q ss_pred CCCCHHHHHHHHhccCCeEEEEEeecCCCCCcceEEEEEeCChHHHHHHHHhcCCeeeCCeEEEEeecCCCCCC
Q 021295 66 SSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVKKAEPKKPN 139 (314)
Q Consensus 66 ~~~~e~~l~~~F~~~G~v~~v~i~~~~~~g~~rG~afV~F~~~~~a~~a~~~l~~~~~~gr~l~V~~a~~~~~~ 139 (314)
.+++|++|+++|++||+|++|.|+. +++|||||+|+++++|++||+.++. +.+++|+|+++.++...
T Consensus 27 ~~~te~~L~~~F~~~G~V~~v~i~~-----~~rGfaFVeF~~~~~A~~Ai~~~~~--~~g~~l~V~~a~~~~~~ 93 (100)
T 2d9o_A 27 GGYSKDVLLRLLQKYGEVLNLVLSS-----KKPGTAVVEFATVKAAELAVQNEVG--LVDNPLKISWLEGQPQD 93 (100)
T ss_dssp CSCCHHHHHHHHHTTSCEEEEEEES-----SSSSEEEEEESCHHHHHHHHHTCCB--CSSSBCEEECSSCCCCC
T ss_pred CCCCHHHHHHHHHhcCCEEEEEEcc-----CCCCEEEEEECCHHHHHHHHHhcCC--CCCCeEEEEEccCCCCC
Confidence 5689999999999999999999983 5799999999999999999998544 67999999998876543
No 200
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.51 E-value=5.3e-14 Score=116.15 Aligned_cols=77 Identities=22% Similarity=0.529 Sum_probs=68.7
Q ss_pred CcceEEEcCCCCCCCHHHHHHHHhcc----C-------CeEEEEEeecCCCCCcceEEEEEeCChHHHHHHHHhcCCeee
Q 021295 55 KTKKIFVGGIPSSVNEDEFKDFFMQF----G-------DVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLEL 123 (314)
Q Consensus 55 ~~~~l~V~nLp~~~~e~~l~~~F~~~----G-------~v~~v~i~~~~~~g~~rG~afV~F~~~~~a~~a~~~l~~~~~ 123 (314)
+.++|||+|||++++|++|+++|++| + .|.++.+.+ +++||||+|+++++|++|+ .||+..|
T Consensus 3 ~~~~l~V~nLp~~~t~~~l~~~F~~~g~~~g~~~~~~~~v~~~~~~~------~~g~afV~f~~~~~A~~A~-~~~~~~~ 75 (172)
T 2g4b_A 3 SARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQ------DKNFAFLEFRSVDETTQAM-AFDGIIF 75 (172)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEEET------TTTEEEEEESSHHHHHHHG-GGTTCEE
T ss_pred cccEEEEcCCCcccCHHHHHHHHHHHhhhcccccCCCCceeeeEecC------CCCEEEEEeCCHHHHHHHH-HhCCcEe
Confidence 56899999999999999999999999 6 677777754 3789999999999999999 8999999
Q ss_pred CCeEEEEeecCCCCC
Q 021295 124 AGAQVEVKKAEPKKP 138 (314)
Q Consensus 124 ~gr~l~V~~a~~~~~ 138 (314)
.+++|+|.++.+...
T Consensus 76 ~g~~i~v~~~~~~~~ 90 (172)
T 2g4b_A 76 QGQSLKIRRPHDYQP 90 (172)
T ss_dssp TTEECEEECCSSCCC
T ss_pred cCceeeecCCcccCC
Confidence 999999998876543
No 201
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=99.51 E-value=8.4e-15 Score=111.76 Aligned_cols=72 Identities=17% Similarity=0.377 Sum_probs=64.3
Q ss_pred EcCCCCCCCHHHHHHHH------------hccCCeEEEEEeecCCCCCcceEEEEEeCChHHHHHHHHhcCCeeeCCeEE
Q 021295 61 VGGIPSSVNEDEFKDFF------------MQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQV 128 (314)
Q Consensus 61 V~nLp~~~~e~~l~~~F------------~~~G~v~~v~i~~~~~~g~~rG~afV~F~~~~~a~~a~~~l~~~~~~gr~l 128 (314)
+.+||+.+++++|+++| ++||+|++|.|++++. ++++|||||+|+++++|++|++.||+..|.+++|
T Consensus 20 ~~~l~~~~~~~~l~~~f~~~~edl~~~f~~~~G~V~~v~i~~~~~-~~~~G~~fV~f~~~~~A~~A~~~lng~~~~Gr~i 98 (104)
T 1jmt_A 20 ADGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLG-DHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQPI 98 (104)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECCSSS-SSSEEEEEEEESCHHHHHHHHHHHTTCEETTEEC
T ss_pred cCCcccccCHHHHHHHHHHHHHHHHHHhhccCCceEEEEEEeCCC-CCccEEEEEEECCHHHHHHHHHHHCCCEECCEEE
Confidence 56788888888777666 9999999999998864 6899999999999999999999999999999999
Q ss_pred EEeec
Q 021295 129 EVKKA 133 (314)
Q Consensus 129 ~V~~a 133 (314)
+|.++
T Consensus 99 ~v~~s 103 (104)
T 1jmt_A 99 HAELS 103 (104)
T ss_dssp CEEEC
T ss_pred EEEEc
Confidence 99876
No 202
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.49 E-value=9.8e-14 Score=117.17 Aligned_cols=77 Identities=22% Similarity=0.523 Sum_probs=67.4
Q ss_pred CcceEEEcCCCCCCCHHHHHHHHhcc----C-------CeEEEEEeecCCCCCcceEEEEEeCChHHHHHHHHhcCCeee
Q 021295 55 KTKKIFVGGIPSSVNEDEFKDFFMQF----G-------DVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLEL 123 (314)
Q Consensus 55 ~~~~l~V~nLp~~~~e~~l~~~F~~~----G-------~v~~v~i~~~~~~g~~rG~afV~F~~~~~a~~a~~~l~~~~~ 123 (314)
.+++|||+|||++++|++|+++|++| + .|.++.+. ++++||||+|.++++|++|| .||+..|
T Consensus 3 ~~~~l~V~nLp~~~te~~l~~~F~~~g~i~g~~~~~~~~v~~~~~~------~~~g~afV~F~~~~~A~~Al-~l~g~~~ 75 (198)
T 2yh0_A 3 MARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQIN------QDKNFAFLEFRSVDETTQAM-AFDGIIF 75 (198)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHHHHHHHHTCCSSSSCSEEEEEEE------TTTTEEEEEESCSHHHHHHG-GGTTEEE
T ss_pred ceeEEEEcCCCCCCCHHHHHHHHHHHHhhcccccCCCCceEEeEec------CCCCEEEEEeCCHHHHHHHH-HhcCCEE
Confidence 46899999999999999999999999 5 56666554 35789999999999999999 8999999
Q ss_pred CCeEEEEeecCCCCC
Q 021295 124 AGAQVEVKKAEPKKP 138 (314)
Q Consensus 124 ~gr~l~V~~a~~~~~ 138 (314)
.+++|.|.++.+...
T Consensus 76 ~g~~i~v~~~~~~~~ 90 (198)
T 2yh0_A 76 QGQSLKIRRPHDYQP 90 (198)
T ss_dssp TTEEEEEECCCCCCC
T ss_pred cCceEEEeCCCCCCC
Confidence 999999999887644
No 203
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=99.43 E-value=3.1e-13 Score=123.75 Aligned_cols=80 Identities=14% Similarity=0.265 Sum_probs=67.2
Q ss_pred CCCCCCCcceEEEcC--CCCCCCHHHHHHHHhccCCeEEEEEeecCCCCCcceEEEEEeCChHHHHHHHHhcCCeeeC--
Q 021295 49 VGSKDFKTKKIFVGG--IPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELA-- 124 (314)
Q Consensus 49 ~~~~~~~~~~l~V~n--Lp~~~~e~~l~~~F~~~G~v~~v~i~~~~~~g~~rG~afV~F~~~~~a~~a~~~l~~~~~~-- 124 (314)
....+.++++|||+| |++.+||++|+++|++||+|++|.|++ .|+||||+|++.++|++||+.||+.++.
T Consensus 11 v~~~~~ps~~l~VgN~gl~~~~te~~L~~~F~~~G~V~~v~~~~------~kgfaFV~f~~~~~A~~Ai~~lnG~~~~~~ 84 (345)
T 3tht_A 11 IETVSYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP------NKPYSFARYRTTEESKRAYVTLNGKEVVDD 84 (345)
T ss_dssp CCCCSSCCSEEEEETCSGGGTCCHHHHHHHHHTTSCEEEEECCT------TCSEEEEEESSHHHHHHHHHHTTTCEEECT
T ss_pred ceecCCCCCEEEEEcCCCCCCCCHHHHHHHHHhcCCeEEEEEeC------CCCEEEEEECCHHHHHHHHHHhCCCccccc
Confidence 334567789999999 588999999999999999999987753 4789999999999999999999998873
Q ss_pred -Ce--EEEEeecC
Q 021295 125 -GA--QVEVKKAE 134 (314)
Q Consensus 125 -gr--~l~V~~a~ 134 (314)
++ +|.|.++.
T Consensus 85 ~g~~~~ly~~~~~ 97 (345)
T 3tht_A 85 LGQKITLYLNFVE 97 (345)
T ss_dssp TSCEEECEEEECS
T ss_pred cCCceEEEEEEee
Confidence 34 56666654
No 204
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=99.40 E-value=1.1e-12 Score=101.47 Aligned_cols=78 Identities=10% Similarity=0.085 Sum_probs=65.8
Q ss_pred CCcceEEEcCCCCCCC----------HHHHHHHHhccCCeEEEEEeecCCCCCcceEEEEEeCChHHHHHHHHhcCCeee
Q 021295 54 FKTKKIFVGGIPSSVN----------EDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLEL 123 (314)
Q Consensus 54 ~~~~~l~V~nLp~~~~----------e~~l~~~F~~~G~v~~v~i~~~~~~g~~rG~afV~F~~~~~a~~a~~~l~~~~~ 123 (314)
.+++.|.|.|+-.... ++||+++|++||+|++|.|+++. ++|++||+|+++++|++|++.||+.+|
T Consensus 5 ~ps~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~V~~v~i~~~~----~~G~~fV~f~~~e~A~~Ai~~lnG~~f 80 (114)
T 3s6e_A 5 LATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNS----AQGNVYVKCPSIAAAIAAVNALHGRWF 80 (114)
T ss_dssp CCCSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTTCCSEEEECTTC----TTCCEEEECSSHHHHHHHHHHHTTCEE
T ss_pred CCCcEEEEECCCChHHccChhHHHHHHHHHHHHHhccCCEEEEEEecCC----CcEEEEEEECCHHHHHHHHHHhCCCEE
Confidence 4567777777644322 36889999999999999997653 589999999999999999999999999
Q ss_pred CCeEEEEeecCC
Q 021295 124 AGAQVEVKKAEP 135 (314)
Q Consensus 124 ~gr~l~V~~a~~ 135 (314)
.+++|.|.++..
T Consensus 81 ~GR~i~v~~~~~ 92 (114)
T 3s6e_A 81 AGKMITAAYVPL 92 (114)
T ss_dssp TTEECEEEEECH
T ss_pred CCEEEEEEEEcH
Confidence 999999998764
No 205
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.22 E-value=2.6e-11 Score=94.11 Aligned_cols=77 Identities=14% Similarity=0.190 Sum_probs=67.6
Q ss_pred CCCCcceEEEcCCCCC-CCHHHHHHHHhccCCeEEEEEeecCCCCCcceEEEEEeCC-hHHHHHHHHhc--CCeeeCCeE
Q 021295 52 KDFKTKKIFVGGIPSS-VNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDT-EQAVDDLLAKG--NKLELAGAQ 127 (314)
Q Consensus 52 ~~~~~~~l~V~nLp~~-~~e~~l~~~F~~~G~v~~v~i~~~~~~g~~rG~afV~F~~-~~~a~~a~~~l--~~~~~~gr~ 127 (314)
...+...|+|.||+++ +++++|+++|++|++|+.|+|+++.. .|||+|++ +++|++|+++| .++.|++..
T Consensus 14 ~~~~G~il~v~~l~~~~~sredLke~F~~~G~V~~Vd~~~g~~------tgfVrf~~~~~~A~~av~~ln~~~~~i~g~~ 87 (121)
T 1owx_A 14 EEKIGCLLKFSGDLDDQTCREDLHILFSNHGEIKWIDFVRGAK------EGIILFKEKAKEALGKAKDANNGNLQLRNKE 87 (121)
T ss_dssp SCCCCCEEEEEESCCSSCCHHHHHHHTCSSCCEEEEECCTTCS------EEEEEESSCHHHHHHHHHHTTTSCBCTTSSS
T ss_pred cccCCeEEEEecCCCCcCCHHHHHHHHHhcCCEEEEEEecCCC------EEEEEECCChHHHHHHHHHhhcCCcEEeCcE
Confidence 3456789999999999 99999999999999999999998864 59999999 79999999998 478889988
Q ss_pred EEEeecC
Q 021295 128 VEVKKAE 134 (314)
Q Consensus 128 l~V~~a~ 134 (314)
++++...
T Consensus 88 ~~~evL~ 94 (121)
T 1owx_A 88 VTWEVLE 94 (121)
T ss_dssp EEEEECC
T ss_pred EEEEECC
Confidence 8886544
No 206
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.21 E-value=4.7e-11 Score=87.22 Aligned_cols=73 Identities=22% Similarity=0.307 Sum_probs=61.2
Q ss_pred CcceEEEcCCCC----CCCH----HHHHHHHhccCCeEEEEEeecCCCCCcceEEEEEeCChHHHHHHHHhcCCeeeCCe
Q 021295 55 KTKKIFVGGIPS----SVNE----DEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGA 126 (314)
Q Consensus 55 ~~~~l~V~nLp~----~~~e----~~l~~~F~~~G~v~~v~i~~~~~~g~~rG~afV~F~~~~~a~~a~~~l~~~~~~gr 126 (314)
+.-||+|.-++. ++-+ .+|.+.|++||+|..|+|+.++ +||+|++.++|.+||+ ||+..+.++
T Consensus 6 pd~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vi~vr~~~d~--------~fVtF~d~~sAlaAi~-mnG~~v~Gr 76 (91)
T 2dnr_A 6 SGGTVLVSIKSSLPENNFFDDALIDELLQQFASFGEVILIRFVEDK--------MWVTFLEGSSALNVLS-LNGKELLNR 76 (91)
T ss_dssp SSCEEEEEEECSSTTTCSCCHHHHHHHHHHHHTTCCEEEEEECSSS--------EEEEESSHHHHHHGGG-GTTCEETTE
T ss_pred CCCeEEEEeccCccccccCCHHHHHHHHHHHHhCCCeEEEEEecCC--------EEEEECChHHHHHHHh-cCCeEeCCe
Confidence 445777766652 2223 6788999999999999999874 8999999999999998 899999999
Q ss_pred EEEEeecCCC
Q 021295 127 QVEVKKAEPK 136 (314)
Q Consensus 127 ~l~V~~a~~~ 136 (314)
.|+|+.+++.
T Consensus 77 ~LkV~lkt~d 86 (91)
T 2dnr_A 77 TITIALKSPS 86 (91)
T ss_dssp EEEEEECCCS
T ss_pred EEEEEeCCCC
Confidence 9999998864
No 207
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.09 E-value=5.5e-11 Score=92.03 Aligned_cols=66 Identities=14% Similarity=0.377 Sum_probs=36.5
Q ss_pred CCcccEEEEEECCHHHHHHHHH--ccCccCCcEEEEeecCCCCCCCC----CCCCcceEEEcCCCCCCCHHH
Q 021295 7 GQPRGFGFVTYADPSVVDKVIE--DTHIINGKQVEIKRTIPKGAVGS----KDFKTKKIFVGGIPSSVNEDE 72 (314)
Q Consensus 7 g~~kG~aFV~f~~~~~a~~A~~--~~~~i~g~~i~v~~~~~~~~~~~----~~~~~~~l~V~nLp~~~~e~~ 72 (314)
..+||||||+|++.++|++||+ +.+.|.++.|.|+++.++..... ...+.++|||.|||+++|++.
T Consensus 42 ~~~kg~afV~f~~~~~A~~Ai~~l~~~~~~g~~i~V~~a~~~~~~~~~~~~~~~~~~~lyv~Nl~~~~T~~a 113 (115)
T 4f25_A 42 NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGPGSTRAA 113 (115)
T ss_dssp TEEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEESSCCCC----------------------------
T ss_pred CCCCceEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCCccccccccccccCCCCceEeCCCCCCccccc
Confidence 4589999999999999999997 55689999999999877654332 334456899999999999874
No 208
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.04 E-value=4e-10 Score=82.66 Aligned_cols=72 Identities=14% Similarity=0.221 Sum_probs=61.4
Q ss_pred CCcceEEEcCCCCC------CCH---HHHHHHHhccCCeEEEEEeecCCCCCcceEEEEEeCChHHHHHHHHhcCCeeeC
Q 021295 54 FKTKKIFVGGIPSS------VNE---DEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELA 124 (314)
Q Consensus 54 ~~~~~l~V~nLp~~------~~e---~~l~~~F~~~G~v~~v~i~~~~~~g~~rG~afV~F~~~~~a~~a~~~l~~~~~~ 124 (314)
++.-||+|.-++.+ ..+ .+|.+.|++||+|..|+|+.|+ +||+|.+.++|.+||+ ||+..+.
T Consensus 13 PpD~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vilvr~v~d~--------~fVtF~d~~sAl~AI~-ldG~~v~ 83 (95)
T 1ufw_A 13 PLDATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYGTIVLVRINQGQ--------MLVTFADSHSALSVLD-VDGMKVK 83 (95)
T ss_dssp CTTCEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHSCCSEEEEETTE--------EEEECSCSHHHHHHHH-GGGSEET
T ss_pred CCCCeEEEEecCCcccccccCCHHHHHHHHHHHHHCCCEEEEEEecCc--------EEEEEcChHHHHHHHh-cCCeeeC
Confidence 45678888888643 232 5688999999999999999884 9999999999999999 8999999
Q ss_pred CeEEEEeecC
Q 021295 125 GAQVEVKKAE 134 (314)
Q Consensus 125 gr~l~V~~a~ 134 (314)
+|.|+|++..
T Consensus 84 Gr~L~V~~k~ 93 (95)
T 1ufw_A 84 GRAVKISGPS 93 (95)
T ss_dssp TEEEEEECCC
T ss_pred CeEEEEeccC
Confidence 9999998754
No 209
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=99.03 E-value=1.3e-09 Score=94.05 Aligned_cols=68 Identities=18% Similarity=0.152 Sum_probs=61.0
Q ss_pred CCHHHHHHHHhccCCeEEEEEeecC----CCCCcceEEEEEeCChHHHHHHHHhcCCeeeCCeEEEEeecCC
Q 021295 68 VNEDEFKDFFMQFGDVQEHQIMRDH----STSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVKKAEP 135 (314)
Q Consensus 68 ~~e~~l~~~F~~~G~v~~v~i~~~~----~~g~~rG~afV~F~~~~~a~~a~~~l~~~~~~gr~l~V~~a~~ 135 (314)
..+++|++.|++||+|++|.|+++. .+.+++|++||+|++.++|++|++.||+.++.+|+|.|.+...
T Consensus 141 e~~~dl~~e~~~~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~~~gr~i~~~~~~~ 212 (222)
T 3dxb_A 141 DLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAGRKVVAEVYDQ 212 (222)
T ss_dssp THHHHHHHHHTTTSCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEECCH
T ss_pred HHHHHHHHHHHccCCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCceECCeEEEEEEcCH
Confidence 3568999999999999999999554 4458999999999999999999999999999999999998753
No 210
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=98.78 E-value=1.1e-08 Score=75.51 Aligned_cols=49 Identities=29% Similarity=0.550 Sum_probs=42.6
Q ss_pred CCCCCCCCcccEEEEEECCHHHHHHHHHcc---CccCCcEEEEeecCCCCCC
Q 021295 1 MKDRKTGQPRGFGFVTYADPSVVDKVIEDT---HIINGKQVEIKRTIPKGAV 49 (314)
Q Consensus 1 m~d~~tg~~kG~aFV~f~~~~~a~~A~~~~---~~i~g~~i~v~~~~~~~~~ 49 (314)
|+|+.|+++||||||+|++.++|++||+.+ ..+.+++|.|+++.+++..
T Consensus 35 ~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~gr~i~V~~a~~~~~~ 86 (91)
T 2lxi_A 35 MRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNILGQKVSMHYSDPKPKI 86 (91)
T ss_dssp SSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEETTEEEEEECCCSCCCC
T ss_pred EecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEECCEEEEEEEcCCCCCC
Confidence 578999999999999999999999999843 2689999999998876543
No 211
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=98.74 E-value=7.7e-08 Score=71.98 Aligned_cols=74 Identities=14% Similarity=0.141 Sum_probs=67.2
Q ss_pred CCcceEEEcCCCCCCCHHHHHHHHhcc-----CCeEEEEEeecCCCCCcceEEEEEeCChHHHHHHHHhcCCeeeCCeEE
Q 021295 54 FKTKKIFVGGIPSSVNEDEFKDFFMQF-----GDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQV 128 (314)
Q Consensus 54 ~~~~~l~V~nLp~~~~e~~l~~~F~~~-----G~v~~v~i~~~~~~g~~rG~afV~F~~~~~a~~a~~~l~~~~~~gr~l 128 (314)
...++|-|-+||+.++++.|+.+++++ +.|+.|.+..|.. =|+|+|++..+|-+|.-.|++.+|.+++|
T Consensus 19 ~~~rtiaL~~ipDtvndarIr~lve~~~~i~~g~i~KI~L~pDH~------GAivef~d~~~AgKasLaL~G~ef~gr~L 92 (117)
T 2l9w_A 19 ELETLICLFPLSDKVSPSLICQFLQEEIHINEKDIRKILLVSDFN------GAIIIFRDSKFAAKMLMILNGSQFQGKVI 92 (117)
T ss_dssp TTTSCEEEECCCTTCCHHHHHHHHHHHTCCCTTTCSEEEEETTTT------EEEEECSCHHHHHHHHHHHSSEEETTEEE
T ss_pred cCCcEEEEecCCCCCCHHHHHHHHhhhhccCccceeEEEEecCCC------ceEEEEccchhhHHHHhhcCCeeecCeEE
Confidence 346889999999999999999999999 9999999998853 59999999999999999999999999999
Q ss_pred EEeec
Q 021295 129 EVKKA 133 (314)
Q Consensus 129 ~V~~a 133 (314)
+|...
T Consensus 93 r~gTv 97 (117)
T 2l9w_A 93 RSGTI 97 (117)
T ss_dssp EEECH
T ss_pred EecCH
Confidence 98644
No 212
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=98.64 E-value=2e-08 Score=74.81 Aligned_cols=45 Identities=27% Similarity=0.480 Sum_probs=39.2
Q ss_pred CCCCCCCCcccEEEEEECCHHHHHHHHHccC------ccCCcEEEEeecCC
Q 021295 1 MKDRKTGQPRGFGFVTYADPSVVDKVIEDTH------IINGKQVEIKRTIP 45 (314)
Q Consensus 1 m~d~~tg~~kG~aFV~f~~~~~a~~A~~~~~------~i~g~~i~v~~~~~ 45 (314)
|+|+.|+++||||||+|.+.++|++|++.++ .|++++|.|+++..
T Consensus 44 ~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~~~i~Gr~i~V~~Aks 94 (95)
T 2lkz_A 44 IKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLHPPLKIDGKTIGVDFAKS 94 (95)
T ss_dssp CCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSSSCEEETTEEEEEEECCC
T ss_pred EecCCCCCCceEeEEEECCHHHHHHHHHHhcCCCCCceECCEEEEEEEccC
Confidence 5789999999999999999999999998332 48899999998754
No 213
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=98.62 E-value=3.1e-08 Score=74.27 Aligned_cols=45 Identities=22% Similarity=0.578 Sum_probs=40.5
Q ss_pred CCCCCCCCcccEEEEEECCHHHHHHHHH--ccCccCCcEEEEeecCC
Q 021295 1 MKDRKTGQPRGFGFVTYADPSVVDKVIE--DTHIINGKQVEIKRTIP 45 (314)
Q Consensus 1 m~d~~tg~~kG~aFV~f~~~~~a~~A~~--~~~~i~g~~i~v~~~~~ 45 (314)
++|+.|+++||||||+|++.++|++|++ +...|.+++|.|+++.|
T Consensus 52 ~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~gr~l~V~~AkP 98 (99)
T 4fxv_A 52 IRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSYARP 98 (99)
T ss_dssp EECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCB
T ss_pred eecCCCCcccccEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEeeC
Confidence 4688999999999999999999999998 55689999999999865
No 214
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.59 E-value=6.2e-08 Score=72.84 Aligned_cols=50 Identities=34% Similarity=0.573 Sum_probs=44.7
Q ss_pred CCCCCCCCcccEEEEEECCHHHHHHHHHccCccCCcEEEEeecCCCCCCC
Q 021295 1 MKDRKTGQPRGFGFVTYADPSVVDKVIEDTHIINGKQVEIKRTIPKGAVG 50 (314)
Q Consensus 1 m~d~~tg~~kG~aFV~f~~~~~a~~A~~~~~~i~g~~i~v~~~~~~~~~~ 50 (314)
|+|+.|+++||||||+|.+.++|++||++.+.|.++.|.|+++.++....
T Consensus 48 ~~~~~~g~~~g~afV~f~~~~~a~~A~~~~~~~~g~~l~v~~a~~~~~~~ 97 (103)
T 2cqg_A 48 KKDLKTGHSKGFGFVRFTEYETQVKVMSQRHMIDGRWCDCKLPNSKQSQD 97 (103)
T ss_dssp EECSSSCSEEEEEEEEESSHHHHHHHHHSCEEETTEEEEEECCCTTCCCC
T ss_pred EecCCCCCccceEEEEECCHHHHHHHHHcCCeeCCeEEEEEecCCCCcCC
Confidence 35778999999999999999999999998888999999999998876544
No 215
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=98.56 E-value=2.9e-08 Score=72.94 Aligned_cols=48 Identities=17% Similarity=0.369 Sum_probs=38.1
Q ss_pred CCCCCCCCcccEEEEEECCHHHHHHHHH--ccCccCCcEEEEeecCCCCC
Q 021295 1 MKDRKTGQPRGFGFVTYADPSVVDKVIE--DTHIINGKQVEIKRTIPKGA 48 (314)
Q Consensus 1 m~d~~tg~~kG~aFV~f~~~~~a~~A~~--~~~~i~g~~i~v~~~~~~~~ 48 (314)
|+|+.|+++||||||+|++.++|++|++ +...+.++.|.|+++.++..
T Consensus 36 ~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~gr~i~V~~~~~~~~ 85 (90)
T 3p5t_L 36 FENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPSNKLEH 85 (90)
T ss_dssp EECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCSSSCCCEECCC-----
T ss_pred EecCCCCccCcEEEEEECCHHHHHHHHHHcCCCeeCCEEEEEEECCCCcc
Confidence 4578899999999999999999999997 55689999999999877644
No 216
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.54 E-value=1.5e-07 Score=70.10 Aligned_cols=50 Identities=40% Similarity=0.755 Sum_probs=43.8
Q ss_pred CCCCCCCCcccEEEEEECCHHHHHHHHH-ccCccCCcEEEEeecCCCCCCC
Q 021295 1 MKDRKTGQPRGFGFVTYADPSVVDKVIE-DTHIINGKQVEIKRTIPKGAVG 50 (314)
Q Consensus 1 m~d~~tg~~kG~aFV~f~~~~~a~~A~~-~~~~i~g~~i~v~~~~~~~~~~ 50 (314)
|+|+.|+++|+||||+|++.++|++||+ +.+.|.++.|.|+++.++....
T Consensus 43 ~~~~~~~~~~g~afV~f~~~~~a~~A~~~~~~~~~g~~l~V~~a~~~~~~~ 93 (99)
T 2dgs_A 43 IYDAEKQRPRGFGFITFEDEQSVDQAVNMHFHDIMGKKVEVKRAEPRDSKS 93 (99)
T ss_dssp CCCTTTCSCCSEEEEEESSHHHHHHHHHHCCCBSSSCBCEEEECCCCCCCC
T ss_pred EeCCCCCCCCceEEEEECCHHHHHHHHHhCCCEECCeEEEEEECCCCcccC
Confidence 5678899999999999999999999998 5568999999999998775543
No 217
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.52 E-value=2.5e-07 Score=68.85 Aligned_cols=50 Identities=26% Similarity=0.432 Sum_probs=43.1
Q ss_pred CCCCCCCCcccEEEEEECCHHHHHHHHH--ccCccCCcEEEEeecCCCCCCC
Q 021295 1 MKDRKTGQPRGFGFVTYADPSVVDKVIE--DTHIINGKQVEIKRTIPKGAVG 50 (314)
Q Consensus 1 m~d~~tg~~kG~aFV~f~~~~~a~~A~~--~~~~i~g~~i~v~~~~~~~~~~ 50 (314)
++|+.|+++++||||+|.+.++|++||+ +...|.++.|.|+++.++....
T Consensus 41 ~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~~~~ 92 (99)
T 1whw_A 41 PIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRMLHVLPSTIKKEAS 92 (99)
T ss_dssp CCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEESSSCEEEEEECCCCSTTC
T ss_pred EecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcCCCcccc
Confidence 4677899999999999999999999997 4458899999999998876543
No 218
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.52 E-value=2e-07 Score=68.94 Aligned_cols=50 Identities=24% Similarity=0.554 Sum_probs=43.3
Q ss_pred CCCCCCCCcccEEEEEECCHHHHHHHHH--ccCccCCcEEEEeecCCCCCCC
Q 021295 1 MKDRKTGQPRGFGFVTYADPSVVDKVIE--DTHIINGKQVEIKRTIPKGAVG 50 (314)
Q Consensus 1 m~d~~tg~~kG~aFV~f~~~~~a~~A~~--~~~~i~g~~i~v~~~~~~~~~~ 50 (314)
++|+.|+++++||||+|++.++|++|++ +...|.++.|.|+++.++....
T Consensus 39 ~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~~~~ 90 (96)
T 1x5t_A 39 MRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYAFKKDSKG 90 (96)
T ss_dssp CCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEETTEECEEEESCCCCCCC
T ss_pred EEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEecccCCCC
Confidence 4677899999999999999999999999 4458899999999988765443
No 219
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=98.50 E-value=1e-07 Score=72.88 Aligned_cols=46 Identities=11% Similarity=0.199 Sum_probs=40.3
Q ss_pred CCCCCCCCcccEEEEEECCHHHHHHHHH--ccCccCCcEEEEeecCCC
Q 021295 1 MKDRKTGQPRGFGFVTYADPSVVDKVIE--DTHIINGKQVEIKRTIPK 46 (314)
Q Consensus 1 m~d~~tg~~kG~aFV~f~~~~~a~~A~~--~~~~i~g~~i~v~~~~~~ 46 (314)
|+|+.|+++||||||+|++.++|++|++ +...|.++.|.|+++...
T Consensus 39 ~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~~gr~i~V~~a~~~ 86 (110)
T 3s8s_A 39 LLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSVMGNIIHAQLDIKG 86 (110)
T ss_dssp EECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECSTT
T ss_pred EECCCCCceeeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECCCC
Confidence 4688999999999999999999999998 555899999999887543
No 220
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=98.50 E-value=3.5e-08 Score=75.82 Aligned_cols=65 Identities=15% Similarity=0.242 Sum_probs=54.8
Q ss_pred CCCcccEEEEEECCHHHHHHHHH--ccCccCCcEEEEeecCCCCCCCCCCCCcceEEEcCCCCCCCHHHHHHHHhccCC
Q 021295 6 TGQPRGFGFVTYADPSVVDKVIE--DTHIINGKQVEIKRTIPKGAVGSKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGD 82 (314)
Q Consensus 6 tg~~kG~aFV~f~~~~~a~~A~~--~~~~i~g~~i~v~~~~~~~~~~~~~~~~~~l~V~nLp~~~~e~~l~~~F~~~G~ 82 (314)
++.+++||||+|.+.++|++|++ +...+.++.|.|.++.++... .+++...++++|+++|++||.
T Consensus 43 ~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~~~------------~~~~~~~~~~~l~~~~~~~g~ 109 (115)
T 3lqv_A 43 TPETRGTAYVVYEDIFDAKNAVDHLSGFNVSNRYLVVLYYNANRAF------------QKMDTKKKEEQLKLLKEKYGI 109 (115)
T ss_dssp STTTTTCEEEEESSHHHHHHHHHHHTTCBSSSCBCEEEECCHHHHT------------TTSCHHHHHHHHHHHHHHHCC
T ss_pred CCCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEecCChhh------------hhhhHhHhHHHHHHHHHHhCC
Confidence 45679999999999999999998 556899999999998765332 467788899999999999974
No 221
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.48 E-value=9.1e-07 Score=65.64 Aligned_cols=75 Identities=28% Similarity=0.448 Sum_probs=63.8
Q ss_pred CcceEEEcCCCCCCCHHHHHHHHhcc-----CCeEEEEEeecCCCCCcceEEEEEeCChHHHHHHHHhcCCeeeCCeEEE
Q 021295 55 KTKKIFVGGIPSSVNEDEFKDFFMQF-----GDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVE 129 (314)
Q Consensus 55 ~~~~l~V~nLp~~~~e~~l~~~F~~~-----G~v~~v~i~~~~~~g~~rG~afV~F~~~~~a~~a~~~l~~~~~~gr~l~ 129 (314)
..++|.|.|||.+++++.|+-+|++- |+|+.|+... .-|+|+|.++++|+++|++ ..+.|.+.+|.
T Consensus 7 ~~~~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~~~--------~~AvItF~d~~va~rVL~k-~~H~L~~~~Ls 77 (104)
T 2dhx_A 7 GGVAVEVRGLPPAVPDELLTLYFENRRRSGGGPVLSWQRLG--------CGGVLTFREPADAERVLAQ-ADHELHGAQLS 77 (104)
T ss_dssp CCCEEEEESCCTTSCHHHHHHHHHCTTTTCCCCEEEEEEET--------TEEEEEESSHHHHHHHHTC-SCCBSSSSBCE
T ss_pred CccEEEEECCCCCCChhHheEEEeCCCcCCCceeeEEEEcC--------CcEEEEEcChHHHHHHhcC-CcceecCeEEE
Confidence 45799999999999999999999872 6899998865 2699999999999999997 57788899999
Q ss_pred EeecCCCCC
Q 021295 130 VKKAEPKKP 138 (314)
Q Consensus 130 V~~a~~~~~ 138 (314)
|....++.+
T Consensus 78 V~P~~~~~~ 86 (104)
T 2dhx_A 78 LRPAPPRAP 86 (104)
T ss_dssp EEECCCCCC
T ss_pred EEcCCCCCc
Confidence 987665543
No 222
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.48 E-value=1.5e-07 Score=70.61 Aligned_cols=49 Identities=33% Similarity=0.616 Sum_probs=43.1
Q ss_pred CCCCCCCCcccEEEEEECCHHHHHHHHH--ccCccCCcEEEEeecCCCCCC
Q 021295 1 MKDRKTGQPRGFGFVTYADPSVVDKVIE--DTHIINGKQVEIKRTIPKGAV 49 (314)
Q Consensus 1 m~d~~tg~~kG~aFV~f~~~~~a~~A~~--~~~~i~g~~i~v~~~~~~~~~ 49 (314)
|+|+.|+++|+||||+|++.++|++||+ +.+.|.++.|.|+++.++...
T Consensus 45 ~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~~~~~ 95 (102)
T 2fc8_A 45 VTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDWAKPKGEG 95 (102)
T ss_dssp EECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECCCCCSS
T ss_pred EecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEecCCCCC
Confidence 4677899999999999999999999998 556899999999999876543
No 223
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.47 E-value=2.4e-07 Score=69.37 Aligned_cols=50 Identities=20% Similarity=0.331 Sum_probs=43.3
Q ss_pred CCCCCCCCcccEEEEEECCHHHHHHHHH--ccCccCCcEEEEeecCCCCCCC
Q 021295 1 MKDRKTGQPRGFGFVTYADPSVVDKVIE--DTHIINGKQVEIKRTIPKGAVG 50 (314)
Q Consensus 1 m~d~~tg~~kG~aFV~f~~~~~a~~A~~--~~~~i~g~~i~v~~~~~~~~~~ 50 (314)
|+|+.|+++++||||+|++.++|++|++ +...|.++.|.|+++.++....
T Consensus 45 ~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~~~~~~ 96 (102)
T 2cqb_A 45 PLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNLAKPMRIKE 96 (102)
T ss_dssp CCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEETTEEEEEEECCCCCCCC
T ss_pred EecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEeCCCCCCCC
Confidence 4678899999999999999999999997 5568999999999988765543
No 224
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.46 E-value=3.9e-07 Score=69.28 Aligned_cols=50 Identities=12% Similarity=0.359 Sum_probs=43.4
Q ss_pred CCCCCCCCcccEEEEEECCHHHHHHHHHc--------cCccCCcEEEEeecCCCCCCC
Q 021295 1 MKDRKTGQPRGFGFVTYADPSVVDKVIED--------THIINGKQVEIKRTIPKGAVG 50 (314)
Q Consensus 1 m~d~~tg~~kG~aFV~f~~~~~a~~A~~~--------~~~i~g~~i~v~~~~~~~~~~ 50 (314)
|+|+.|+++++||||+|.+.++|++||+. ...|.++.|.|+++.++....
T Consensus 48 ~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~~~~g~~l~v~~a~~~~~~~ 105 (111)
T 1x4h_A 48 VLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLKLDGRQLKVDLAVTRDEAA 105 (111)
T ss_dssp CBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEESSSCEEEEECCCCCCCCC
T ss_pred EecCCCCCCccEEEEEECCHHHHHHHHHHhccccccCCcEEcCEEEEEEECCCCccCC
Confidence 46888999999999999999999999983 568999999999988775543
No 225
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=98.46 E-value=2.8e-07 Score=70.65 Aligned_cols=50 Identities=24% Similarity=0.495 Sum_probs=43.1
Q ss_pred CCCCCCCCcccEEEEEECCHHHHHHHHH--ccCccCCcEEEEeecCCCCCCC
Q 021295 1 MKDRKTGQPRGFGFVTYADPSVVDKVIE--DTHIINGKQVEIKRTIPKGAVG 50 (314)
Q Consensus 1 m~d~~tg~~kG~aFV~f~~~~~a~~A~~--~~~~i~g~~i~v~~~~~~~~~~ 50 (314)
|+|+.|+++++||||+|.+.++|++||+ +...|.++.|.|+++.++....
T Consensus 48 ~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~~~~ 99 (115)
T 2dgo_A 48 VKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATRKPPAP 99 (115)
T ss_dssp EECTTTCCEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEEESSCCCCCS
T ss_pred EEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEccCCCCCC
Confidence 3577899999999999999999999998 4568999999999988775543
No 226
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=98.45 E-value=2.2e-07 Score=69.81 Aligned_cols=49 Identities=12% Similarity=0.387 Sum_probs=42.2
Q ss_pred CCCCCCCCcccEEEEEECCHHHHHHHHH-ccCccCCcEEEEeecCCCCCC
Q 021295 1 MKDRKTGQPRGFGFVTYADPSVVDKVIE-DTHIINGKQVEIKRTIPKGAV 49 (314)
Q Consensus 1 m~d~~tg~~kG~aFV~f~~~~~a~~A~~-~~~~i~g~~i~v~~~~~~~~~ 49 (314)
|+|+.|++++|||||+|++.++|++||+ +...|.++.|.|+++.++...
T Consensus 47 ~~~~~~g~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~V~~a~~~~~~ 96 (103)
T 2dng_A 47 VRDKDTDKFKGFCYVEFDEVDSLKEALTYDGALLGDRSLRVDIAEGRKQD 96 (103)
T ss_dssp EECSSSCSEEEEEEEEESSHHHHHHHGGGTTCEETTEECEEEECCCCCCC
T ss_pred eecCCCCccceEEEEEECCHHHHHHHHhhCCCeECCeEEEEEEecCCCCC
Confidence 4678899999999999999999999996 445889999999998876543
No 227
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.45 E-value=2.9e-07 Score=67.92 Aligned_cols=49 Identities=24% Similarity=0.584 Sum_probs=42.8
Q ss_pred CCCCCCCCcccEEEEEECCHHHHHHHHH--ccCccCCcEEEEeecCCCCCC
Q 021295 1 MKDRKTGQPRGFGFVTYADPSVVDKVIE--DTHIINGKQVEIKRTIPKGAV 49 (314)
Q Consensus 1 m~d~~tg~~kG~aFV~f~~~~~a~~A~~--~~~~i~g~~i~v~~~~~~~~~ 49 (314)
++|+.|+++++||||+|++.++|++|++ +...|.++.|.|+++.++...
T Consensus 38 ~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~~~ 88 (95)
T 2dnz_A 38 MKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPMRVGHVTERLDG 88 (95)
T ss_dssp ECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEEESSCCCCC
T ss_pred eecCCCCceeeEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEcccccCC
Confidence 3677899999999999999999999998 556899999999998876543
No 228
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=98.45 E-value=1.7e-07 Score=70.17 Aligned_cols=58 Identities=22% Similarity=0.459 Sum_probs=46.8
Q ss_pred cccEEEEEECCHHHHHHHHH--ccCccCCcEEEEeecCCCCCCCC------CCCCcceEEEcCCCC
Q 021295 9 PRGFGFVTYADPSVVDKVIE--DTHIINGKQVEIKRTIPKGAVGS------KDFKTKKIFVGGIPS 66 (314)
Q Consensus 9 ~kG~aFV~f~~~~~a~~A~~--~~~~i~g~~i~v~~~~~~~~~~~------~~~~~~~l~V~nLp~ 66 (314)
+++||||+|++.++|++|++ +...+.++.|.|+++.++..... ......+|||++|+.
T Consensus 36 ~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~~~~~~~~~~~~~~~~~~ifvg~L~h 101 (101)
T 2hvz_A 36 PPGFAFVEFEDPRDAEDAVRGLDGKVICGSRVRVELSTGMPRRSRFDRPPARRKLLEVLFNGPLEH 101 (101)
T ss_dssp SSSEEEEECSSHHHHHHHHHHHHHSCSSSCCCEEEESSSCCCSSCCCSCCCSCCCCSCCCSCCCCC
T ss_pred CCCEEEEEECCHHHHHHHHHHHCCCeECCcEEEEEEccCCCCcccCCCCCccccCCCceecCCCCC
Confidence 79999999999999999998 55689999999999877654332 223367899999973
No 229
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.44 E-value=1.1e-07 Score=71.57 Aligned_cols=47 Identities=17% Similarity=0.145 Sum_probs=40.4
Q ss_pred CCCCCCCCcccEEEEEECCHHHHHHHHH-ccCccCCcEEEEeecCCCCC
Q 021295 1 MKDRKTGQPRGFGFVTYADPSVVDKVIE-DTHIINGKQVEIKRTIPKGA 48 (314)
Q Consensus 1 m~d~~tg~~kG~aFV~f~~~~~a~~A~~-~~~~i~g~~i~v~~~~~~~~ 48 (314)
|+|+ |+++||||||+|+++++|++||+ +.+.|.++.|+|.++.+.+.
T Consensus 47 ~~d~-~g~~~G~afV~F~~~~~a~~Al~~~~~~~~gr~i~V~~~~~~~~ 94 (102)
T 1wez_A 47 EIGP-DGRVTGEADVEFATHEDAVAAMAKDKANMQHRYVELFLNSTAGT 94 (102)
T ss_dssp EESS-SSCEEEEEEEECSSSHHHHHHHTTSSCCSSSSCCEEEEECCCCC
T ss_pred EECC-CCCEeeEEEEEECCHHHHHHHHHhCCCeECCcEEEEEECCCCCC
Confidence 3576 99999999999999999999997 55688999999998776543
No 230
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.44 E-value=2.9e-07 Score=69.32 Aligned_cols=49 Identities=31% Similarity=0.524 Sum_probs=42.7
Q ss_pred CCCCCCCCcccEEEEEECCHHHHHHHHH--ccCccCCcEEEEeecCCCCCC
Q 021295 1 MKDRKTGQPRGFGFVTYADPSVVDKVIE--DTHIINGKQVEIKRTIPKGAV 49 (314)
Q Consensus 1 m~d~~tg~~kG~aFV~f~~~~~a~~A~~--~~~~i~g~~i~v~~~~~~~~~ 49 (314)
++|+.|+++|+||||+|.+.++|++|++ +...|.++.|.|+++.++...
T Consensus 48 ~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~~ 98 (105)
T 1x5u_A 48 PKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLYGKPIRVNKASAHNKN 98 (105)
T ss_dssp CBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBCSSCBCEEEETTTTSCC
T ss_pred EecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEECCCCCcC
Confidence 4677899999999999999999999999 445899999999998876543
No 231
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.44 E-value=3.9e-07 Score=69.64 Aligned_cols=49 Identities=27% Similarity=0.514 Sum_probs=43.0
Q ss_pred CCCCCCCCcccEEEEEECCHHHHHHHHH--ccCccCCcEEEEeecCCCCCC
Q 021295 1 MKDRKTGQPRGFGFVTYADPSVVDKVIE--DTHIINGKQVEIKRTIPKGAV 49 (314)
Q Consensus 1 m~d~~tg~~kG~aFV~f~~~~~a~~A~~--~~~~i~g~~i~v~~~~~~~~~ 49 (314)
++|+.|+++|+||||+|.+.++|++||+ +...|.++.|.|+++.++...
T Consensus 56 ~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~~~~ 106 (113)
T 2cpe_A 56 YLDKETGKPKGDATVSYEDPPTAKAAVEWFDGKDFQGSKLKVSLARKKPPM 106 (113)
T ss_dssp CBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTTCEETTEECEEECSSCCCCS
T ss_pred EEeCCCCCeeeEEEEEECCHHHHHHHHHHcCCCccCCCEEEEEECCCCCCC
Confidence 4677899999999999999999999998 556899999999998876544
No 232
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=98.44 E-value=2.4e-07 Score=66.50 Aligned_cols=46 Identities=24% Similarity=0.515 Sum_probs=41.0
Q ss_pred CCCCCCCcccEEEEEECCHHHHHHHHH--ccCccCCcEEEEeecCCCC
Q 021295 2 KDRKTGQPRGFGFVTYADPSVVDKVIE--DTHIINGKQVEIKRTIPKG 47 (314)
Q Consensus 2 ~d~~tg~~kG~aFV~f~~~~~a~~A~~--~~~~i~g~~i~v~~~~~~~ 47 (314)
+|+.|+++++||||+|.+.++|++|++ +...+.++.|.|+++.+++
T Consensus 35 ~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~~~ 82 (83)
T 3md1_A 35 WDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAAKLE 82 (83)
T ss_dssp ECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECCCCC
T ss_pred EcCCCCCccceEEEEECCHHHHHHHHHHhcCCeeCCcEEEEEecCcCC
Confidence 577899999999999999999999998 5568999999999988763
No 233
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=98.44 E-value=1.4e-07 Score=70.69 Aligned_cols=48 Identities=21% Similarity=0.496 Sum_probs=41.9
Q ss_pred CCCCCCCCcccEEEEEECCHHHHHHHHH-ccCccCCcEEEEeecCCCCC
Q 021295 1 MKDRKTGQPRGFGFVTYADPSVVDKVIE-DTHIINGKQVEIKRTIPKGA 48 (314)
Q Consensus 1 m~d~~tg~~kG~aFV~f~~~~~a~~A~~-~~~~i~g~~i~v~~~~~~~~ 48 (314)
|+|+.|+++||||||+|++.++|++||+ +...|.++.|.|+++.++..
T Consensus 49 ~~~~~~g~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~V~~a~~~~~ 97 (101)
T 1fj7_A 49 VVDVRTGTNRKFGYVDFESAEDLEKALELTGLKVFGNEIKLEKPKGRDG 97 (101)
T ss_dssp CCEEEEETTTTEEEEEESSHHHHHHHHHGGGCCBTTBCCEEECCSCCCC
T ss_pred EecCCCCCcCcEEEEEECCHHHHHHHHhcCCcEECCcEEEEEEcCCCCC
Confidence 5677899999999999999999999998 44588999999999877644
No 234
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=98.43 E-value=3.4e-07 Score=69.75 Aligned_cols=49 Identities=41% Similarity=0.711 Sum_probs=42.6
Q ss_pred CCCCCCCCcccEEEEEECCHHHHHHHHHcc-CccCCcEEEEeecCCCCCC
Q 021295 1 MKDRKTGQPRGFGFVTYADPSVVDKVIEDT-HIINGKQVEIKRTIPKGAV 49 (314)
Q Consensus 1 m~d~~tg~~kG~aFV~f~~~~~a~~A~~~~-~~i~g~~i~v~~~~~~~~~ 49 (314)
|+|+.|+++||||||+|.+.++|++||+.+ +.|.++.|.|+++.++...
T Consensus 58 ~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~~~~l~g~~l~V~~a~~~~~~ 107 (109)
T 2rs2_A 58 MRDPLTKRSRGFGFVTFMDQAGVDKVLAQSRHELDSKTIDPKVAFPRRAQ 107 (109)
T ss_dssp CCCTTTCCCTTCEEEEESSHHHHHHHHHSSCEEETTEEEEEEECCCCCCC
T ss_pred EECCCCCCcCcEEEEEECCHHHHHHHHHHCCCcCCCEEEEEEEccCCCCC
Confidence 467889999999999999999999999843 6889999999998876543
No 235
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=98.43 E-value=2e-07 Score=67.64 Aligned_cols=46 Identities=26% Similarity=0.558 Sum_probs=39.5
Q ss_pred CCCCCCCCcccEEEEEECCHHHHHHHHH--ccCccCCcEEEEeecCCC
Q 021295 1 MKDRKTGQPRGFGFVTYADPSVVDKVIE--DTHIINGKQVEIKRTIPK 46 (314)
Q Consensus 1 m~d~~tg~~kG~aFV~f~~~~~a~~A~~--~~~~i~g~~i~v~~~~~~ 46 (314)
++|+.|+++++||||+|.+.++|++|++ +...+.++.|.|+++.++
T Consensus 39 ~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~k 86 (87)
T 3bs9_A 39 VKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATRK 86 (87)
T ss_dssp EECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEEC--
T ss_pred EecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEecCCC
Confidence 3577899999999999999999999998 456899999999998764
No 236
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.43 E-value=2.9e-07 Score=68.94 Aligned_cols=49 Identities=27% Similarity=0.544 Sum_probs=42.7
Q ss_pred CCCCCCCCcccEEEEEECCHHHHHHHHH--ccCccCCcEEEEeecCCCCCC
Q 021295 1 MKDRKTGQPRGFGFVTYADPSVVDKVIE--DTHIINGKQVEIKRTIPKGAV 49 (314)
Q Consensus 1 m~d~~tg~~kG~aFV~f~~~~~a~~A~~--~~~~i~g~~i~v~~~~~~~~~ 49 (314)
++|+.|+++++||||+|.+.++|++||+ +...|.++.|.|+++.++...
T Consensus 45 ~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~~~ 95 (102)
T 1x5s_A 45 VKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVDQAGKSSDN 95 (102)
T ss_dssp CCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCTTSCCCEEEEEECCCCC
T ss_pred EeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECCCCCCC
Confidence 4677899999999999999999999997 556899999999998876554
No 237
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.42 E-value=3.8e-07 Score=68.62 Aligned_cols=49 Identities=10% Similarity=0.304 Sum_probs=42.1
Q ss_pred CCCCCC-CCcccEEEEEECCHHHHHHHHH-ccCccCCcEEEEeecCCCCCC
Q 021295 1 MKDRKT-GQPRGFGFVTYADPSVVDKVIE-DTHIINGKQVEIKRTIPKGAV 49 (314)
Q Consensus 1 m~d~~t-g~~kG~aFV~f~~~~~a~~A~~-~~~~i~g~~i~v~~~~~~~~~ 49 (314)
|+|+.| ++++|||||+|++.++|++||+ +...|.++.|.|+++.++...
T Consensus 47 ~~~~~~~g~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~V~~a~~~~~~ 97 (104)
T 1wi8_A 47 PREPSNPERLKGFGYAEFEDLDSLLSALSLNEESLGNKRIRVDVADQAQDK 97 (104)
T ss_dssp CBCSSCTTSBCSCEEEEESSHHHHHHHHGGGTCEETTEECEEEECCCCCCC
T ss_pred ecCCCCCCCcCeEEEEEECCHHHHHHHHhcCCCEeCCcEEEEEEccCCCCC
Confidence 467777 9999999999999999999995 445899999999998876554
No 238
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=98.42 E-value=2.2e-07 Score=65.48 Aligned_cols=43 Identities=49% Similarity=0.758 Sum_probs=37.6
Q ss_pred CCCCCCCCcccEEEEEECCHHHHHHHHH-ccCccCCcEEEEeec
Q 021295 1 MKDRKTGQPRGFGFVTYADPSVVDKVIE-DTHIINGKQVEIKRT 43 (314)
Q Consensus 1 m~d~~tg~~kG~aFV~f~~~~~a~~A~~-~~~~i~g~~i~v~~~ 43 (314)
++|+.|++++|||||+|+++++|++|++ +.+.+.++.|.|+++
T Consensus 32 ~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~~~~~g~~l~v~~A 75 (75)
T 2mss_A 32 MFDKTTNRHRGFGFVTFESEDIVEKVCEIHFHEINNKMVECKKA 75 (75)
T ss_dssp CBCSSSTTSCBEEEEECSCHHHHHHHHSSSCCCSSSCCCEEECC
T ss_pred EecCCCCCcCcEEEEEECCHHHHHHHHHCCCCEECCEEEEEEeC
Confidence 4677899999999999999999999998 556889999988764
No 239
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.41 E-value=4.4e-07 Score=68.42 Aligned_cols=47 Identities=21% Similarity=0.364 Sum_probs=40.6
Q ss_pred CCCCCCCcccEEEEEECCHHHHHHHHH-ccCccCCcEEEEeecCCCCCC
Q 021295 2 KDRKTGQPRGFGFVTYADPSVVDKVIE-DTHIINGKQVEIKRTIPKGAV 49 (314)
Q Consensus 2 ~d~~tg~~kG~aFV~f~~~~~a~~A~~-~~~~i~g~~i~v~~~~~~~~~ 49 (314)
+| .|+++||||||+|+++++|++||+ +.+.|.++.|.|.++.+++..
T Consensus 50 ~~-~~g~~~G~afV~F~~~~~a~~A~~~~~~~~~gr~i~v~~~~~~~~~ 97 (104)
T 1wg5_A 50 VD-FQGRSTGEAFVQFASQEIAEKALKKHKERIGHRYIEIFKSSRAEVR 97 (104)
T ss_dssp BC-SSSCBCSEEEEEESSHHHHHHHHTTTTCCSSSSCCEEEEECTTTSC
T ss_pred EC-CCCCcceEEEEEECCHHHHHHHHHhCcchhCCcEEEEEECCHHHHH
Confidence 45 799999999999999999999999 556899999999988766543
No 240
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.41 E-value=3.5e-07 Score=68.68 Aligned_cols=49 Identities=20% Similarity=0.394 Sum_probs=42.4
Q ss_pred CCCCCCCCcccEEEEEECCHHHHHHHHH--ccCccCCcEEEEeecCCCCCC
Q 021295 1 MKDRKTGQPRGFGFVTYADPSVVDKVIE--DTHIINGKQVEIKRTIPKGAV 49 (314)
Q Consensus 1 m~d~~tg~~kG~aFV~f~~~~~a~~A~~--~~~~i~g~~i~v~~~~~~~~~ 49 (314)
++|+.|+++++||||+|.+.++|++||+ +...|.++.|.|+++.++...
T Consensus 48 ~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~~~ 98 (103)
T 2cq0_A 48 AKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDHLILNVEWAKPSTNS 98 (103)
T ss_dssp EECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEEESSCCCCS
T ss_pred eecCCCCceeeEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEECCCCCCC
Confidence 3577899999999999999999999999 445899999999998876543
No 241
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.41 E-value=5.7e-07 Score=68.17 Aligned_cols=48 Identities=21% Similarity=0.309 Sum_probs=42.3
Q ss_pred CCCCCCCcccEEEEEECCHHHHHHHHHcc----CccCCcEEEEeecCCCCCC
Q 021295 2 KDRKTGQPRGFGFVTYADPSVVDKVIEDT----HIINGKQVEIKRTIPKGAV 49 (314)
Q Consensus 2 ~d~~tg~~kG~aFV~f~~~~~a~~A~~~~----~~i~g~~i~v~~~~~~~~~ 49 (314)
+|+.|+++|+||||+|.+.++|++|++.+ ..+.++.|.|+++.++...
T Consensus 44 ~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~~g~~l~V~~a~~~~~~ 95 (109)
T 2dis_A 44 SAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAVDWAEPEIDV 95 (109)
T ss_dssp SSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCBTTBCCEEEESCSSCST
T ss_pred cCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCceecCCeEEEEEcCCCCCc
Confidence 67889999999999999999999999943 5789999999999877554
No 242
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=98.41 E-value=1.5e-07 Score=70.61 Aligned_cols=46 Identities=20% Similarity=0.254 Sum_probs=40.4
Q ss_pred CCCCCCCCcccEEEEEECCHHHHHHHHH--ccCccCC-cEEEEeecCCC
Q 021295 1 MKDRKTGQPRGFGFVTYADPSVVDKVIE--DTHIING-KQVEIKRTIPK 46 (314)
Q Consensus 1 m~d~~tg~~kG~aFV~f~~~~~a~~A~~--~~~~i~g-~~i~v~~~~~~ 46 (314)
|+|+.|+++||||||+|.+.++|++|++ +...|.+ +.|.|+++.++
T Consensus 45 ~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~g~r~l~V~~a~~~ 93 (100)
T 3ns6_A 45 PIDEATGKTKGFLFVECGSMNDAKKIIKSFHGKRLDLKHRLFLYTMKDV 93 (100)
T ss_dssp CEETTTTEECSEEEEEESSHHHHHHHHHHHTTCBSSSSCBCEEEESHHH
T ss_pred EEcCCCCccceEEEEEECCHHHHHHHHHHhCCcccCCCeEEEEEECchh
Confidence 4688899999999999999999999997 5568888 99999987654
No 243
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=98.40 E-value=3.2e-07 Score=70.34 Aligned_cols=50 Identities=24% Similarity=0.450 Sum_probs=43.0
Q ss_pred CCCCCCCCcccEEEEEECCHHHHHHHHH--ccCccCCcEEEEeecCCCCCCC
Q 021295 1 MKDRKTGQPRGFGFVTYADPSVVDKVIE--DTHIINGKQVEIKRTIPKGAVG 50 (314)
Q Consensus 1 m~d~~tg~~kG~aFV~f~~~~~a~~A~~--~~~~i~g~~i~v~~~~~~~~~~ 50 (314)
|+|+.|+++|+||||+|.+.++|++||+ +...|.++.|.|+++.++....
T Consensus 58 ~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~~~~ 109 (115)
T 2cpz_A 58 FIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLKVQLKRSKNDSK 109 (115)
T ss_dssp EECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEECCCCSCCCC
T ss_pred EECCCCCCcCccEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEcCCCCcCC
Confidence 3577899999999999999999999997 5568999999999988765543
No 244
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.39 E-value=3.5e-07 Score=70.24 Aligned_cols=50 Identities=38% Similarity=0.707 Sum_probs=43.4
Q ss_pred CCCCCCCCcccEEEEEECCHHHHHHHHH-ccCccCCcEEEEeecCCCCCCC
Q 021295 1 MKDRKTGQPRGFGFVTYADPSVVDKVIE-DTHIINGKQVEIKRTIPKGAVG 50 (314)
Q Consensus 1 m~d~~tg~~kG~aFV~f~~~~~a~~A~~-~~~~i~g~~i~v~~~~~~~~~~ 50 (314)
|+|+.|+++||||||+|.+.++|++||+ +.+.|.++.|.|+++.++....
T Consensus 60 ~~~~~~g~~~g~afV~f~~~~~a~~Ai~~~~~~~~g~~l~V~~a~~~~~~~ 110 (116)
T 1x4b_A 60 MRDPASKRSRGFGFVTFSSMAEVDAAMAARPHSIDGRVVEPKRAVAREESG 110 (116)
T ss_dssp ECCTTTSSCCSEEEEECSSHHHHHHHHTSCSEEETTEEEEEECCSSCCCCC
T ss_pred EECCCCCCcCceEEEEeCCHHHHHHHHHhCCcEECCEEEEEEECCCCccCC
Confidence 4677899999999999999999999998 4458999999999998875543
No 245
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.38 E-value=3.3e-07 Score=68.82 Aligned_cols=49 Identities=20% Similarity=0.374 Sum_probs=42.7
Q ss_pred CCCCCCCCcccEEEEEECCHHHHHHHHH--ccCccCCcEEEEeecCCCCCC
Q 021295 1 MKDRKTGQPRGFGFVTYADPSVVDKVIE--DTHIINGKQVEIKRTIPKGAV 49 (314)
Q Consensus 1 m~d~~tg~~kG~aFV~f~~~~~a~~A~~--~~~~i~g~~i~v~~~~~~~~~ 49 (314)
++|+.|+++|+||||+|.+.++|++||+ +...|.++.|.|+++.+....
T Consensus 46 ~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~~~~~ 96 (103)
T 2dnm_A 46 PREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAELDGRELRVQVARYGRRD 96 (103)
T ss_dssp CBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCBTTBCCEEEECSSCCSC
T ss_pred EeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEECCcCCCC
Confidence 4678899999999999999999999998 556899999999998876443
No 246
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=98.38 E-value=5.1e-07 Score=66.85 Aligned_cols=48 Identities=15% Similarity=0.339 Sum_probs=42.1
Q ss_pred CCCCCCCCcccEEEEEECCHHHHHHHHH--ccCccCCcEEEEeecCCCCC
Q 021295 1 MKDRKTGQPRGFGFVTYADPSVVDKVIE--DTHIINGKQVEIKRTIPKGA 48 (314)
Q Consensus 1 m~d~~tg~~kG~aFV~f~~~~~a~~A~~--~~~~i~g~~i~v~~~~~~~~ 48 (314)
++|+.|+++++||||+|.+.++|++|++ +...+.++.|.|+++.++..
T Consensus 35 ~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~~~ 84 (96)
T 2x1f_A 35 MFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQLGSRFLKCGYSSNSDI 84 (96)
T ss_dssp CBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECSCSSG
T ss_pred EeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEcCCCCC
Confidence 4677899999999999999999999997 55689999999999887644
No 247
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.38 E-value=6.6e-07 Score=68.69 Aligned_cols=49 Identities=33% Similarity=0.650 Sum_probs=41.9
Q ss_pred CCCCCCCCcccEEEEEECCHHHHHHHHHcc-CccCCcEEEEeecCCCCCC
Q 021295 1 MKDRKTGQPRGFGFVTYADPSVVDKVIEDT-HIINGKQVEIKRTIPKGAV 49 (314)
Q Consensus 1 m~d~~tg~~kG~aFV~f~~~~~a~~A~~~~-~~i~g~~i~v~~~~~~~~~ 49 (314)
|+|+.|+++|+||||+|++.++|++||+.+ ..|.++.|.|+++.+....
T Consensus 50 ~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~~~~g~~l~V~~a~~~~~~ 99 (116)
T 2cqd_A 50 ITDRQTGKSRGYGFVTMADRAAAERACKDPNPIIDGRKANVNLAYLGAKP 99 (116)
T ss_dssp SCCSSSCCCCSEEEEEESSHHHHHHHHTCSSCEETTEECEEEESTTTCCC
T ss_pred EEcCCCCccceEEEEEECCHHHHHHHHHhCCCcCCCEEEEEEEcccCCCc
Confidence 467889999999999999999999999933 3789999999998765433
No 248
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.38 E-value=1.6e-07 Score=70.79 Aligned_cols=50 Identities=40% Similarity=0.812 Sum_probs=43.3
Q ss_pred CCCCCCCCcccEEEEEECCHHHHHHHHH-ccCccCCcEEEEeecCCCCCCC
Q 021295 1 MKDRKTGQPRGFGFVTYADPSVVDKVIE-DTHIINGKQVEIKRTIPKGAVG 50 (314)
Q Consensus 1 m~d~~tg~~kG~aFV~f~~~~~a~~A~~-~~~~i~g~~i~v~~~~~~~~~~ 50 (314)
|+|+.|+++|+||||+|++.++|++||+ +.+.|.++.|.|+++.++....
T Consensus 49 ~~~~~~g~~~g~afV~f~~~~~a~~a~~~~~~~~~g~~l~V~~a~~~~~~~ 99 (105)
T 2dh8_A 49 MKDKTTNQSRGFGFVKFKDPNCVGTVLASRPHTLDGRNIDPKPCTPRGMQP 99 (105)
T ss_dssp EECSSSCCEEEEEEEEESSTTHHHHHHHHCSEEETTEEEBCCCSCCSSCCT
T ss_pred eeCCCCCCcceEEEEEECCHHHHHHHHHhCCCeECCEEEEEEEccCCCCCC
Confidence 3577899999999999999999999999 5568999999999988775543
No 249
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.36 E-value=3.6e-07 Score=67.88 Aligned_cols=46 Identities=17% Similarity=0.293 Sum_probs=39.7
Q ss_pred CCCCCCCCcccEEEEEECCHHHHHHHHHc--cCccCCcEEEEeecCCC
Q 021295 1 MKDRKTGQPRGFGFVTYADPSVVDKVIED--THIINGKQVEIKRTIPK 46 (314)
Q Consensus 1 m~d~~tg~~kG~aFV~f~~~~~a~~A~~~--~~~i~g~~i~v~~~~~~ 46 (314)
|+|+.|+++|+||||+|.+.++|++||+. ...|.++.|.|+++..+
T Consensus 48 ~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~~~ 95 (98)
T 2cqp_A 48 LKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLVLGSGP 95 (98)
T ss_dssp EEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEETTEECEEEESSCS
T ss_pred EEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEEcCCC
Confidence 35678999999999999999999999974 45899999999987643
No 250
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=98.35 E-value=7.8e-07 Score=67.03 Aligned_cols=49 Identities=22% Similarity=0.335 Sum_probs=41.1
Q ss_pred CCCCCCCCcccEEEEEECCHHHHHHHHHcc--Ccc---CCcEEEEeecCCCCCC
Q 021295 1 MKDRKTGQPRGFGFVTYADPSVVDKVIEDT--HII---NGKQVEIKRTIPKGAV 49 (314)
Q Consensus 1 m~d~~tg~~kG~aFV~f~~~~~a~~A~~~~--~~i---~g~~i~v~~~~~~~~~ 49 (314)
|+|+.|+++|+||||+|.+.++|++|++.+ ..+ .++.|.|+++.++...
T Consensus 46 ~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l~v~~a~~~~~~ 99 (106)
T 2dgp_A 46 LKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNRPIQVKPADSESRG 99 (106)
T ss_dssp CCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCEEEECCCCSCC
T ss_pred EecCCCCCcceEEEEEECCHHHHHHHHHHhcCCcccCCCCceEEEEECCccccc
Confidence 467889999999999999999999999843 355 7899999998876543
No 251
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=98.35 E-value=2.4e-07 Score=65.19 Aligned_cols=43 Identities=35% Similarity=0.546 Sum_probs=37.6
Q ss_pred CCCCCCCCcccEEEEEECCHHHHHHHHH-ccCccCCcEEEEeec
Q 021295 1 MKDRKTGQPRGFGFVTYADPSVVDKVIE-DTHIINGKQVEIKRT 43 (314)
Q Consensus 1 m~d~~tg~~kG~aFV~f~~~~~a~~A~~-~~~~i~g~~i~v~~~ 43 (314)
++|+.|++++|||||+|+++++|++|++ +.+.+.++.|.|+++
T Consensus 32 ~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~~~~g~~l~v~~a 75 (75)
T 1iqt_A 32 PMDNKTNKRRGFCFITFKEEEPVKKIMEKKYHNVGLSKCEIKVA 75 (75)
T ss_dssp CCSCCCSSSCCCEEEECSSSHHHHHHHTTSSCCBTTBCCCEEEC
T ss_pred EecCCCCCcCCEEEEEECCHHHHHHHHHhCCCeECCEEEEEEEC
Confidence 4678899999999999999999999999 556889999888764
No 252
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=98.34 E-value=3.3e-07 Score=66.54 Aligned_cols=43 Identities=35% Similarity=0.783 Sum_probs=37.6
Q ss_pred CCCCCCCCcccEEEEEECCHHHHHHHHH-ccCccCCcEEEEeec
Q 021295 1 MKDRKTGQPRGFGFVTYADPSVVDKVIE-DTHIINGKQVEIKRT 43 (314)
Q Consensus 1 m~d~~tg~~kG~aFV~f~~~~~a~~A~~-~~~~i~g~~i~v~~~ 43 (314)
|+|+.|++++|||||+|.+.++|++|++ +.+.|+++.|.|+++
T Consensus 44 ~~~~~~g~~~g~afV~f~~~~~a~~A~~~~~~~~~g~~i~v~~A 87 (87)
T 3s7r_A 44 KMDPNTGRSRGFGFILFKDAASVEKVLDQKEHRLDGRVIDPKKA 87 (87)
T ss_dssp EECTTTCCEEEEEEEEESSTHHHHHHHHSSCEEETTEEEEEEEC
T ss_pred eecCCCCccccEEEEEECCHHHHHHHHHhCCCEECCEEEEEEeC
Confidence 3577899999999999999999999998 445799999998864
No 253
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=98.34 E-value=3.9e-07 Score=68.69 Aligned_cols=47 Identities=21% Similarity=0.437 Sum_probs=41.3
Q ss_pred CCCCCCCCcccEEEEEECCHHHHHHHHH--ccCccCCcEEEEeecCCCC
Q 021295 1 MKDRKTGQPRGFGFVTYADPSVVDKVIE--DTHIINGKQVEIKRTIPKG 47 (314)
Q Consensus 1 m~d~~tg~~kG~aFV~f~~~~~a~~A~~--~~~~i~g~~i~v~~~~~~~ 47 (314)
++|+.|+++++||||+|.+.++|++|++ +...|.++.|.|+++.++.
T Consensus 56 ~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~ 104 (106)
T 1p27_B 56 NLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDWCFVRG 104 (106)
T ss_dssp EECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEESEESS
T ss_pred EecCCCCceeeEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEeecCCC
Confidence 3678899999999999999999999998 5568999999999987653
No 254
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.33 E-value=2.4e-07 Score=71.12 Aligned_cols=45 Identities=18% Similarity=0.285 Sum_probs=39.2
Q ss_pred CCCCCCCCcccEEEEEECCHHHHHHHHH-ccCccCCcEEEEeecCCC
Q 021295 1 MKDRKTGQPRGFGFVTYADPSVVDKVIE-DTHIINGKQVEIKRTIPK 46 (314)
Q Consensus 1 m~d~~tg~~kG~aFV~f~~~~~a~~A~~-~~~~i~g~~i~v~~~~~~ 46 (314)
|+|+ |+++||||||+|++.++|++||+ +.+.|.++.|.|+++.++
T Consensus 49 ~~d~-~g~~~G~afV~F~~~~~a~~Al~~~~~~~~gr~i~v~~a~~~ 94 (114)
T 2cpy_A 49 LVDN-NGQGLGQALVQFKNEDDARKSERLHRKKLNGREAFVHVVTLE 94 (114)
T ss_dssp CCCT-TSSCSSCEEEECSSHHHHHHHGGGCSEEETTEEEEEEEECHH
T ss_pred EECC-CCCcceEEEEEECCHHHHHHHHHhCCCccCCeEEEEEECCHH
Confidence 4677 99999999999999999999998 555889999999887654
No 255
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=98.32 E-value=5.1e-07 Score=70.99 Aligned_cols=47 Identities=21% Similarity=0.483 Sum_probs=41.5
Q ss_pred CCCCCCCCcccEEEEEECCHHHHHHHHH--ccCccCCcEEEEeecCCCC
Q 021295 1 MKDRKTGQPRGFGFVTYADPSVVDKVIE--DTHIINGKQVEIKRTIPKG 47 (314)
Q Consensus 1 m~d~~tg~~kG~aFV~f~~~~~a~~A~~--~~~~i~g~~i~v~~~~~~~ 47 (314)
++|+.|+++|+||||+|++.++|++||+ +...|.++.|.|+++.++.
T Consensus 79 ~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i~g~~l~V~~a~~~~ 127 (129)
T 2kxn_B 79 VYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVDFSITKR 127 (129)
T ss_dssp ECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCSSSSCCEESCCSSSS
T ss_pred EecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEecCCC
Confidence 3678899999999999999999999998 5568999999999987654
No 256
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=98.32 E-value=3.3e-07 Score=72.12 Aligned_cols=48 Identities=21% Similarity=0.412 Sum_probs=41.3
Q ss_pred CCCCCCCCcccEEEEEECCHHHHHHHHH--ccC----ccCCcEEEEeecCCCCCC
Q 021295 1 MKDRKTGQPRGFGFVTYADPSVVDKVIE--DTH----IINGKQVEIKRTIPKGAV 49 (314)
Q Consensus 1 m~d~~tg~~kG~aFV~f~~~~~a~~A~~--~~~----~i~g~~i~v~~~~~~~~~ 49 (314)
|+|+.|+++||||||+|++. +|++|++ +.. .|.++.|.|+++.++...
T Consensus 58 ~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~~~~gr~l~V~~a~~~~~~ 111 (131)
T 2m2b_A 58 IKDKQTQLNRGFAFIQLSTI-EAAQLLQILQALHPPLTIDGKTINVEFAKGSKRD 111 (131)
T ss_dssp CBCSSSSSBCSCEEEECCHH-HHHHHHHHHTTCCCSCCGGGCCCCCEECCCSCCC
T ss_pred EEcCCCCCcceEEEEEECCH-HHHHHHHHhcCCCCCccCCCEEEEEEECCCCCCC
Confidence 57888999999999999999 9999998 445 789999999998776443
No 257
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=98.32 E-value=4.1e-07 Score=67.12 Aligned_cols=44 Identities=16% Similarity=0.336 Sum_probs=38.6
Q ss_pred CCCCCCCCcccEEEEEECCHHHHHHHHH--ccCccCCcEEEEeecC
Q 021295 1 MKDRKTGQPRGFGFVTYADPSVVDKVIE--DTHIINGKQVEIKRTI 44 (314)
Q Consensus 1 m~d~~tg~~kG~aFV~f~~~~~a~~A~~--~~~~i~g~~i~v~~~~ 44 (314)
|+|+.|+++|+||||+|.++++|++||+ +...|.++.|.|+++.
T Consensus 48 ~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~gr~l~v~~a~ 93 (95)
T 2ek1_A 48 LKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLSGPS 93 (95)
T ss_dssp EEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEECCC
T ss_pred EEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEecc
Confidence 3567899999999999999999999998 5568999999998764
No 258
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.32 E-value=5.4e-07 Score=65.98 Aligned_cols=45 Identities=18% Similarity=0.467 Sum_probs=39.3
Q ss_pred CCCCCCCcccEEEEEECCHHHHHHHHH-ccCccCCcEEEEeecCCCC
Q 021295 2 KDRKTGQPRGFGFVTYADPSVVDKVIE-DTHIINGKQVEIKRTIPKG 47 (314)
Q Consensus 2 ~d~~tg~~kG~aFV~f~~~~~a~~A~~-~~~~i~g~~i~v~~~~~~~ 47 (314)
+| .+++++|||||+|.+.++|++||+ +...|.++.|.|+++.++.
T Consensus 43 ~~-~~g~~~g~afV~f~~~~~a~~A~~~~g~~~~gr~i~v~~a~~~~ 88 (91)
T 2dgw_A 43 RN-AHGNKTGYIFVDFSNEEEVKQALKCNREYMGGRYIEVFREKSGP 88 (91)
T ss_dssp EC-TTSCEEEEEEEECSSHHHHHHHHHSCSEEETTEEEEEEEESSCC
T ss_pred EC-CCCCCceEEEEEECCHHHHHHHHHhCCceeCCcEEEEEECCcCC
Confidence 45 789999999999999999999999 4448899999999987763
No 259
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.31 E-value=1.1e-06 Score=66.19 Aligned_cols=50 Identities=24% Similarity=0.409 Sum_probs=42.4
Q ss_pred CCC-CCCCCcccEEEEEECCHHHHHHHHHc---cCccCCcEEEEeecCCCCCCC
Q 021295 1 MKD-RKTGQPRGFGFVTYADPSVVDKVIED---THIINGKQVEIKRTIPKGAVG 50 (314)
Q Consensus 1 m~d-~~tg~~kG~aFV~f~~~~~a~~A~~~---~~~i~g~~i~v~~~~~~~~~~ 50 (314)
++| +.|+++++||||+|.+.++|++||+. ...|.++.|.|+++.++....
T Consensus 48 ~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~~g~~l~v~~a~~~~~~~ 101 (107)
T 2cph_A 48 PKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLYGRRLVLEWADSEVTVQ 101 (107)
T ss_dssp CCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBSSSCBCEEEECCCCCCCC
T ss_pred ecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCeECCCEEEEEeCCCCCCCC
Confidence 345 67999999999999999999999984 458999999999998775543
No 260
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.31 E-value=6.8e-07 Score=66.65 Aligned_cols=46 Identities=20% Similarity=0.463 Sum_probs=39.8
Q ss_pred CCCCCCCcccEEEEEECCHHHHHHHHH--ccCccCCcEEEEeecCCCCC
Q 021295 2 KDRKTGQPRGFGFVTYADPSVVDKVIE--DTHIINGKQVEIKRTIPKGA 48 (314)
Q Consensus 2 ~d~~tg~~kG~aFV~f~~~~~a~~A~~--~~~~i~g~~i~v~~~~~~~~ 48 (314)
+|+ |+++++||||+|.+.++|++|++ +...|.++.|.|+++.++..
T Consensus 51 ~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~ 98 (100)
T 2do4_A 51 TNR-AGKPKGLAYVEYENESQASQAVMKMDGMTIKENIIKVAISNSGPS 98 (100)
T ss_dssp ECT-TSCEEEEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEECCCCSC
T ss_pred ECC-CCCEEeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEECCCCCC
Confidence 455 89999999999999999999997 45589999999999877643
No 261
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=98.31 E-value=3.3e-07 Score=74.56 Aligned_cols=46 Identities=26% Similarity=0.538 Sum_probs=40.6
Q ss_pred CCCCCCCCcccEEEEEECCHHHHHHHHHc--cCccCCcEEEEeecCCC
Q 021295 1 MKDRKTGQPRGFGFVTYADPSVVDKVIED--THIINGKQVEIKRTIPK 46 (314)
Q Consensus 1 m~d~~tg~~kG~aFV~f~~~~~a~~A~~~--~~~i~g~~i~v~~~~~~ 46 (314)
|+|+.|+++||||||+|.+.++|++||+. ...|.++.|.|+++.++
T Consensus 90 ~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~~Gr~l~V~~a~~~ 137 (156)
T 3n9u_C 90 AENRANGQSKGYAEVVVASENSVHKLLELLPGKVLNGEKVDVRPATRQ 137 (156)
T ss_dssp EECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEETTEECEEEECCHH
T ss_pred EecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEeEEEEcCCC
Confidence 46889999999999999999999999994 46899999999987643
No 262
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=98.30 E-value=5.9e-07 Score=67.16 Aligned_cols=46 Identities=9% Similarity=0.343 Sum_probs=39.6
Q ss_pred CCCC-CCCCcccEEEEEECCHHHHHHHHH-ccCccCCcEEEEeecCCC
Q 021295 1 MKDR-KTGQPRGFGFVTYADPSVVDKVIE-DTHIINGKQVEIKRTIPK 46 (314)
Q Consensus 1 m~d~-~tg~~kG~aFV~f~~~~~a~~A~~-~~~~i~g~~i~v~~~~~~ 46 (314)
|+|+ .|+++||||||+|.+.++|++|++ +...|.++.|.|+++.++
T Consensus 51 ~~~~~~~g~~~g~afV~f~~~~~a~~Ai~l~g~~~~g~~l~V~~a~~~ 98 (100)
T 2j76_E 51 PREPSNPERLKGFGYAEFEDLDSLLSALSLNEESLGNRRIRVDVADQA 98 (100)
T ss_dssp SCCTTTTCCCCSCEEEEECCHHHHHHHHHTTTCCBTTBCCCCEECCCS
T ss_pred EecCCcCCccCeEEEEEECCHHHHHHHHhcCCCEECCeEEEEEeccCC
Confidence 3566 599999999999999999999996 455889999999988765
No 263
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.30 E-value=7.6e-07 Score=65.49 Aligned_cols=43 Identities=19% Similarity=0.445 Sum_probs=38.0
Q ss_pred CCCCCCCCcccEEEEEECCHHHHHHHHH--ccCccCCcEEEEeec
Q 021295 1 MKDRKTGQPRGFGFVTYADPSVVDKVIE--DTHIINGKQVEIKRT 43 (314)
Q Consensus 1 m~d~~tg~~kG~aFV~f~~~~~a~~A~~--~~~~i~g~~i~v~~~ 43 (314)
++|+.|+++++||||+|++.++|++|++ +...|.++.|.|+++
T Consensus 49 ~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 93 (94)
T 2e5h_A 49 MKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQLFGRVIKASIA 93 (94)
T ss_dssp CCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTEEETTEEEEEEEC
T ss_pred EeCCCCCCcccEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEec
Confidence 4678899999999999999999999998 445889999999875
No 264
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=98.30 E-value=8.4e-07 Score=67.36 Aligned_cols=47 Identities=26% Similarity=0.429 Sum_probs=41.4
Q ss_pred CCCCCCCCcccEEEEEECCHHHHHHHHH--ccCccCCcEEEEeecCCCC
Q 021295 1 MKDRKTGQPRGFGFVTYADPSVVDKVIE--DTHIINGKQVEIKRTIPKG 47 (314)
Q Consensus 1 m~d~~tg~~kG~aFV~f~~~~~a~~A~~--~~~~i~g~~i~v~~~~~~~ 47 (314)
++|+.|+++++||||+|.+.++|++|++ +...|.++.|.|+++.++.
T Consensus 59 ~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~~ 107 (110)
T 1oo0_B 59 NLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDWCFVKG 107 (110)
T ss_dssp CBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEESEESS
T ss_pred EecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEEcccCC
Confidence 4678899999999999999999999998 5568999999999987654
No 265
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=98.30 E-value=5.3e-07 Score=67.16 Aligned_cols=43 Identities=26% Similarity=0.516 Sum_probs=38.0
Q ss_pred CCCCCCCCcccEEEEEECCHHHHHHHHH--ccCccCCcEEEEeec
Q 021295 1 MKDRKTGQPRGFGFVTYADPSVVDKVIE--DTHIINGKQVEIKRT 43 (314)
Q Consensus 1 m~d~~tg~~kG~aFV~f~~~~~a~~A~~--~~~~i~g~~i~v~~~ 43 (314)
++|+.|+++||||||+|.+.++|++|++ +...+.++.|.|+++
T Consensus 54 ~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~A 98 (99)
T 2la6_A 54 YTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFSGNPIKVSFA 98 (99)
T ss_dssp EECTTTCSEEEEEEEEBSSHHHHHHHHHHHTTCBSSSSBCEEEEC
T ss_pred EecCCCCCeeeEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEec
Confidence 3577899999999999999999999998 556889999999875
No 266
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=98.29 E-value=1.5e-07 Score=70.51 Aligned_cols=49 Identities=31% Similarity=0.615 Sum_probs=40.5
Q ss_pred CCCCCCCcccEEEEEECCHHHHHHHHHccCccCCcEEEEeecCCCCCCCC
Q 021295 2 KDRKTGQPRGFGFVTYADPSVVDKVIEDTHIINGKQVEIKRTIPKGAVGS 51 (314)
Q Consensus 2 ~d~~tg~~kG~aFV~f~~~~~a~~A~~~~~~i~g~~i~v~~~~~~~~~~~ 51 (314)
+|+ |+++||||||+|++.++|++|+++.+.++++.|.|.++.++.....
T Consensus 43 ~~~-~g~~~g~afV~f~~~~~a~~Ai~~~~~~~g~~l~v~~a~~~~~~~~ 91 (102)
T 2xs2_A 43 TDR-TGVSKGYGFVSFYNDVDVQKIVESQINFHGKKLKLGPAIRKQNLST 91 (102)
T ss_dssp ECT-TSCEEEEEEEEESSCCCHHHHTTCCCEETTEECEEEEEEECC----
T ss_pred ECC-CCCccceEEEEECCHHHHHHHHhCCCeECCEEEEEEECCcCcchhh
Confidence 566 9999999999999999999999966689999999999887655443
No 267
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=98.29 E-value=1.3e-06 Score=63.53 Aligned_cols=36 Identities=8% Similarity=0.221 Sum_probs=31.1
Q ss_pred CcccEEEEEECCHHHHHHHHH--ccCccCCcEEEEeec
Q 021295 8 QPRGFGFVTYADPSVVDKVIE--DTHIINGKQVEIKRT 43 (314)
Q Consensus 8 ~~kG~aFV~f~~~~~a~~A~~--~~~~i~g~~i~v~~~ 43 (314)
.+||||||+|.++++|++|++ +..++.+++|.|+.+
T Consensus 41 ~~kGfaFVey~~~~eA~~Ai~~Ln~~~l~gr~I~V~~A 78 (89)
T 2wbr_A 41 LNQGIALCKYTTREEANKAQMALNNCVLANTTIFAESP 78 (89)
T ss_dssp TTTTEEEEEESSHHHHHHHHHHHTTEEETTEEEEEECC
T ss_pred CCCcEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEEC
Confidence 489999999999999999999 445888898888754
No 268
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.29 E-value=6.1e-07 Score=66.10 Aligned_cols=45 Identities=18% Similarity=0.451 Sum_probs=39.1
Q ss_pred CCCCCCCCcccEEEEEECCHHHHHHHHH--ccCccCCcEEEEeecCC
Q 021295 1 MKDRKTGQPRGFGFVTYADPSVVDKVIE--DTHIINGKQVEIKRTIP 45 (314)
Q Consensus 1 m~d~~tg~~kG~aFV~f~~~~~a~~A~~--~~~~i~g~~i~v~~~~~ 45 (314)
++|+.|+++++||||+|++.++|++|++ +...|.++.|.|+++.+
T Consensus 48 ~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~ 94 (95)
T 2cqc_A 48 VYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVSGPSS 94 (95)
T ss_dssp EECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEEEECCSC
T ss_pred EEcCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEecCC
Confidence 3577899999999999999999999998 44588999999988653
No 269
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=98.28 E-value=8.3e-07 Score=69.13 Aligned_cols=49 Identities=20% Similarity=0.409 Sum_probs=42.7
Q ss_pred CCCCCCCCcccEEEEEECCHHHHHHHHH--ccCccCCcEEEEeecCCCCCC
Q 021295 1 MKDRKTGQPRGFGFVTYADPSVVDKVIE--DTHIINGKQVEIKRTIPKGAV 49 (314)
Q Consensus 1 m~d~~tg~~kG~aFV~f~~~~~a~~A~~--~~~~i~g~~i~v~~~~~~~~~ 49 (314)
|+|+.|+++++||||+|.+.++|++||+ +...|.++.|.|+++.++...
T Consensus 55 ~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~~ 105 (126)
T 3ex7_B 55 NLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDWCFVRGPP 105 (126)
T ss_dssp CBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEESEESSSC
T ss_pred EecCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEEecCCCCC
Confidence 4677899999999999999999999997 556899999999998766543
No 270
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=98.27 E-value=5.6e-07 Score=68.39 Aligned_cols=46 Identities=24% Similarity=0.627 Sum_probs=40.8
Q ss_pred CCCCCCCcccEEEEEECCHHHHHHHHH--ccCccCCcEEEEeecCCCC
Q 021295 2 KDRKTGQPRGFGFVTYADPSVVDKVIE--DTHIINGKQVEIKRTIPKG 47 (314)
Q Consensus 2 ~d~~tg~~kG~aFV~f~~~~~a~~A~~--~~~~i~g~~i~v~~~~~~~ 47 (314)
+|+.|++++|||||+|.+.++|++|++ +...|.++.|.|+++.++.
T Consensus 60 ~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~~a~~k~ 107 (108)
T 2jrs_A 60 MDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKVGHVTERT 107 (108)
T ss_dssp EETTTTEEEEEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEECSCSSC
T ss_pred EcCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEcccCC
Confidence 577899999999999999999999998 5568999999999887653
No 271
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=98.27 E-value=1.5e-06 Score=70.38 Aligned_cols=49 Identities=22% Similarity=0.494 Sum_probs=42.6
Q ss_pred CCCCCCCCcccEEEEEECCHHHHHHHHH--ccCccCCcEEEEeecCCCCCC
Q 021295 1 MKDRKTGQPRGFGFVTYADPSVVDKVIE--DTHIINGKQVEIKRTIPKGAV 49 (314)
Q Consensus 1 m~d~~tg~~kG~aFV~f~~~~~a~~A~~--~~~~i~g~~i~v~~~~~~~~~ 49 (314)
++|+.|+++||||||+|.+.++|++||+ +...|.++.|.|+++.++...
T Consensus 103 ~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~~ 153 (158)
T 2kn4_A 103 PRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMARYGRPP 153 (158)
T ss_dssp CCCSSCTTSCCEEEEEESBHHHHHHHHHHSTTEESSSSEEEEEEECCSSCC
T ss_pred eecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECCCCCCC
Confidence 4678899999999999999999999998 445899999999998876443
No 272
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=98.27 E-value=7.6e-07 Score=70.58 Aligned_cols=49 Identities=27% Similarity=0.426 Sum_probs=42.3
Q ss_pred CCCCCCCCcccEEEEEECCHHHHHHHHH--ccCccCCcEEEEeecCCCCCC
Q 021295 1 MKDRKTGQPRGFGFVTYADPSVVDKVIE--DTHIINGKQVEIKRTIPKGAV 49 (314)
Q Consensus 1 m~d~~tg~~kG~aFV~f~~~~~a~~A~~--~~~~i~g~~i~v~~~~~~~~~ 49 (314)
|+|+.|+++|+||||+|.+.++|++||+ +...|.++.|.|+++.++...
T Consensus 75 ~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~~ 125 (139)
T 1u6f_A 75 VCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNILNKRLKVALAASGHQR 125 (139)
T ss_dssp EEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEECSSCEEEEEESSCCCCC
T ss_pred EEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECCCCCCC
Confidence 3677899999999999999999999998 445899999999998876544
No 273
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.27 E-value=1.5e-06 Score=64.90 Aligned_cols=45 Identities=18% Similarity=0.547 Sum_probs=39.6
Q ss_pred CCCCcccEEEEEECCHHHHHHHHH--ccCccCCcEEEEeecCCCCCC
Q 021295 5 KTGQPRGFGFVTYADPSVVDKVIE--DTHIINGKQVEIKRTIPKGAV 49 (314)
Q Consensus 5 ~tg~~kG~aFV~f~~~~~a~~A~~--~~~~i~g~~i~v~~~~~~~~~ 49 (314)
.++++|+||||+|.+.++|++||+ +...|.++.|.|+++.++...
T Consensus 48 ~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~~~ 94 (101)
T 2fc9_A 48 QNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLELQGPRGSP 94 (101)
T ss_dssp SSSCBCSEEEEECSSHHHHHHHHHHTSSEEETTEEEEEEECSSCCCC
T ss_pred CCCCEeeEEEEEECCHHHHHHHHHHhCCCEeCCeEEEEEEcCCCCCC
Confidence 689999999999999999999998 445889999999998876543
No 274
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=98.27 E-value=7.6e-07 Score=64.14 Aligned_cols=43 Identities=21% Similarity=0.387 Sum_probs=38.1
Q ss_pred CCCCCCCCcccEEEEEECCHHHHHHHHH--ccCccCCcEEEEeec
Q 021295 1 MKDRKTGQPRGFGFVTYADPSVVDKVIE--DTHIINGKQVEIKRT 43 (314)
Q Consensus 1 m~d~~tg~~kG~aFV~f~~~~~a~~A~~--~~~~i~g~~i~v~~~ 43 (314)
++|+.|+++++||||+|++.++|++|++ +...+.++.|.|+++
T Consensus 40 ~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 84 (85)
T 3mdf_A 40 PLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNLA 84 (85)
T ss_dssp CEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred EECCCCCccccEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEc
Confidence 4577899999999999999999999997 556889999999875
No 275
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=98.27 E-value=6.8e-07 Score=65.00 Aligned_cols=45 Identities=22% Similarity=0.601 Sum_probs=39.5
Q ss_pred CCCCCCCcccEEEEEECCHHHHHHHHH-ccCccCCcEEEEeecCCC
Q 021295 2 KDRKTGQPRGFGFVTYADPSVVDKVIE-DTHIINGKQVEIKRTIPK 46 (314)
Q Consensus 2 ~d~~tg~~kG~aFV~f~~~~~a~~A~~-~~~~i~g~~i~v~~~~~~ 46 (314)
+|+.|+++++||||+|.+.++|++|++ +...+.++.|.|+++.++
T Consensus 40 ~~~~~~~~~g~afV~f~~~~~a~~a~~~~g~~~~g~~l~V~~a~~~ 85 (89)
T 3ucg_A 40 CDKFSGHPKGFAYIEFSDKESVRTSLALDESLFRGRQIKVIPKRTN 85 (89)
T ss_dssp ESCSSSSCCEEEEEEESSTHHHHHHGGGTTCEETTEECEEEETTTT
T ss_pred ecCCCCCcceEEEEEECCHHHHHHHHhcCCCEECCcEEEEEEccCC
Confidence 567899999999999999999999996 456899999999987654
No 276
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.27 E-value=8e-07 Score=67.78 Aligned_cols=44 Identities=20% Similarity=0.429 Sum_probs=37.3
Q ss_pred CCCCCCCCcccEEEEEECCHHHHHHHHH-ccCccCCcEEEEeecCC
Q 021295 1 MKDRKTGQPRGFGFVTYADPSVVDKVIE-DTHIINGKQVEIKRTIP 45 (314)
Q Consensus 1 m~d~~tg~~kG~aFV~f~~~~~a~~A~~-~~~~i~g~~i~v~~~~~ 45 (314)
|+|+ ++++||||||+|+++++|++||+ +.+.|.++.|.|..+.+
T Consensus 48 ~~d~-~g~~~G~afV~F~~~~~a~~Al~~~~~~~~gr~i~V~~a~~ 92 (109)
T 2dnn_A 48 LKDH-VGRNNGNGLVKFLSPQDTFEALKRNRMLMIQRYVEVSPATE 92 (109)
T ss_dssp CCCT-TCCCCSEEEEECSSHHHHHHHHHTTTEEETTEEEEEEECCH
T ss_pred EECC-CCCCCeEEEEEECCHHHHHHHHhcCCCeECCeEEEEEECCc
Confidence 4565 49999999999999999999997 55688999999877654
No 277
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=98.27 E-value=5.5e-07 Score=65.77 Aligned_cols=48 Identities=33% Similarity=0.657 Sum_probs=37.7
Q ss_pred CCCCCCCCcccEEEEEECCHHHHHHHHH--ccCccCCcEEEEeecCCCCCC
Q 021295 1 MKDRKTGQPRGFGFVTYADPSVVDKVIE--DTHIINGKQVEIKRTIPKGAV 49 (314)
Q Consensus 1 m~d~~tg~~kG~aFV~f~~~~~a~~A~~--~~~~i~g~~i~v~~~~~~~~~ 49 (314)
++|+.|+++++||||+|++.+ |++|++ +...+.++.|.|+++.++...
T Consensus 34 ~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~~g~~l~V~~a~~~~~~ 83 (90)
T 2ki2_A 34 IYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTDFMGRTIRVTEANPKKSL 83 (90)
T ss_dssp CCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCCSSSSCSEEEC------
T ss_pred EEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCEECCeEEEEEEcCCCCCC
Confidence 467889999999999999999 999998 455889999999998766443
No 278
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.26 E-value=6e-07 Score=66.79 Aligned_cols=47 Identities=26% Similarity=0.556 Sum_probs=39.5
Q ss_pred CCCCCCCCcccEEEEEECCHHHHHHHHH--ccCccCCcE----EEEeecCCCC
Q 021295 1 MKDRKTGQPRGFGFVTYADPSVVDKVIE--DTHIINGKQ----VEIKRTIPKG 47 (314)
Q Consensus 1 m~d~~tg~~kG~aFV~f~~~~~a~~A~~--~~~~i~g~~----i~v~~~~~~~ 47 (314)
|+|+.|+++++||||+|.+.++|++|++ +...|.++. |.|+++.+..
T Consensus 43 ~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~l~v~~a~~~~ 95 (99)
T 2div_A 43 IRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAKRFKLNYATYSG 95 (99)
T ss_dssp EECSSSCCEEEEEEEECSCHHHHHHHHHTTTTSEESSCSSCEECCEEETTCCS
T ss_pred eecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCccCCCCcceeEEEeecCCCC
Confidence 3578899999999999999999999999 445788888 8888876543
No 279
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=98.26 E-value=1e-06 Score=71.32 Aligned_cols=48 Identities=13% Similarity=0.201 Sum_probs=41.9
Q ss_pred CCCCCCCCcccEEEEEECCHHHHHHHHH--ccCccCCcEEEEeecCCCCC
Q 021295 1 MKDRKTGQPRGFGFVTYADPSVVDKVIE--DTHIINGKQVEIKRTIPKGA 48 (314)
Q Consensus 1 m~d~~tg~~kG~aFV~f~~~~~a~~A~~--~~~~i~g~~i~v~~~~~~~~ 48 (314)
|+|+.|+++|+||||+|++.++|++||+ +.+.|.++.|.|+++.+...
T Consensus 72 ~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~~~ 121 (156)
T 1h2v_Z 72 GLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLDDRIIRTDWDAGFKE 121 (156)
T ss_dssp EECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEETTEECEEEEESCCCT
T ss_pred EecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECCCCCC
Confidence 3678899999999999999999999998 55689999999999976543
No 280
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.26 E-value=8.9e-07 Score=66.46 Aligned_cols=48 Identities=27% Similarity=0.601 Sum_probs=40.6
Q ss_pred CCCCCCCCcccEEEEEECCHHHHHHHHHcc--Cc-cCCcEEEEeecCCCCCC
Q 021295 1 MKDRKTGQPRGFGFVTYADPSVVDKVIEDT--HI-INGKQVEIKRTIPKGAV 49 (314)
Q Consensus 1 m~d~~tg~~kG~aFV~f~~~~~a~~A~~~~--~~-i~g~~i~v~~~~~~~~~ 49 (314)
|+|+ |+++|+||||+|.+.++|++||+.+ .. |.++.|.|+++.++...
T Consensus 43 ~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~g~~l~v~~a~~~~~~ 93 (104)
T 2dhg_A 43 VLDQ-TGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPVRLSVAIPKASR 93 (104)
T ss_dssp EECT-TCCEEEEEEEEESCHHHHHHHHHHTTTCCSSSSSCCCCCBCCCCCSC
T ss_pred EECC-CCCccceEEEEECCHHHHHHHHHHccCCcccCCEeEEEEEccCCCcC
Confidence 3566 9999999999999999999999944 46 89999999998776544
No 281
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=98.25 E-value=1.4e-06 Score=67.02 Aligned_cols=47 Identities=26% Similarity=0.577 Sum_probs=40.4
Q ss_pred CCCCCCCcccEEEEEECCHHHHHHHHH--ccCccCCcEEEEeecCCCCCC
Q 021295 2 KDRKTGQPRGFGFVTYADPSVVDKVIE--DTHIINGKQVEIKRTIPKGAV 49 (314)
Q Consensus 2 ~d~~tg~~kG~aFV~f~~~~~a~~A~~--~~~~i~g~~i~v~~~~~~~~~ 49 (314)
+|+ |+++++||||+|++.++|++|++ +...|.++.|.|+++.++...
T Consensus 41 ~~~-~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~~~~ 89 (116)
T 2fy1_A 41 KDR-TSKSRGFAFITFENPADAKNAAKDMNGKSLHGKAIKVEQAKKPSFQ 89 (116)
T ss_dssp CST-TTTCCCEEEEECSSHHHHHHHHHHCSSCBCSSSBCEEEECCCSSCS
T ss_pred ECC-CCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEECCCCCCC
Confidence 455 99999999999999999999998 455899999999998766543
No 282
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.25 E-value=4.8e-07 Score=63.94 Aligned_cols=43 Identities=42% Similarity=0.723 Sum_probs=37.6
Q ss_pred CCCCCCCCcccEEEEEECCHHHHHHHHHcc-CccCCcEEEEeec
Q 021295 1 MKDRKTGQPRGFGFVTYADPSVVDKVIEDT-HIINGKQVEIKRT 43 (314)
Q Consensus 1 m~d~~tg~~kG~aFV~f~~~~~a~~A~~~~-~~i~g~~i~v~~~ 43 (314)
++|+.|++++|||||+|.+.++|++|++.+ ..+.++.|.|+++
T Consensus 33 ~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~~~~~g~~l~v~~a 76 (77)
T 1uaw_A 33 MRDPLTKRSRGFGFVTFMDQAGVDKVLAQSRHELDSKTIDPKVA 76 (77)
T ss_dssp ECCCCSSSCSSEEEECCCCTTHHHHHHHTTTCCCSSCCCEEEEC
T ss_pred ecCCCCCCcCceEEEEEcCHHHHHHHHHhCCCccCCEEEEEEec
Confidence 357789999999999999999999999933 6889999999876
No 283
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=98.24 E-value=1e-06 Score=69.81 Aligned_cols=49 Identities=22% Similarity=0.494 Sum_probs=42.5
Q ss_pred CCCCCCCCcccEEEEEECCHHHHHHHHH--ccCccCCcEEEEeecCCCCCC
Q 021295 1 MKDRKTGQPRGFGFVTYADPSVVDKVIE--DTHIINGKQVEIKRTIPKGAV 49 (314)
Q Consensus 1 m~d~~tg~~kG~aFV~f~~~~~a~~A~~--~~~~i~g~~i~v~~~~~~~~~ 49 (314)
++|+.|+++||||||+|.+.++|++||+ +...|.++.|.|+++.+....
T Consensus 80 ~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~~a~~~~~~ 130 (135)
T 2lea_A 80 PRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMARYGRPP 130 (135)
T ss_dssp CCCSSSSSCCSCCEEECSCHHHHHHHHTTTTTCCSSSSCCEEEECCCCCCC
T ss_pred EecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCCCCCC
Confidence 4677899999999999999999999998 456899999999998876544
No 284
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=98.24 E-value=2.6e-07 Score=72.40 Aligned_cols=45 Identities=20% Similarity=0.372 Sum_probs=38.0
Q ss_pred CCCCCCCCcccEEEEEECCHHHHHHHHH-ccCccCCcEEEEeecCCC
Q 021295 1 MKDRKTGQPRGFGFVTYADPSVVDKVIE-DTHIINGKQVEIKRTIPK 46 (314)
Q Consensus 1 m~d~~tg~~kG~aFV~f~~~~~a~~A~~-~~~~i~g~~i~v~~~~~~ 46 (314)
|+|+. +++||||||+|+++++|++||+ +...|.++.|.|..+.++
T Consensus 76 ~~d~~-GrsrGfaFV~F~~~e~A~~Al~~~~~~l~gR~I~V~~a~~~ 121 (126)
T 2hgm_A 76 PVDPE-GKITGEAFVQFASQELAEKALGKHKERIGHRYIEVFKSSQE 121 (126)
T ss_dssp CCCSS-SSSCSEEEEEESSTTHHHHHHTTTTCCBTTBCCCCEEECHH
T ss_pred EECCC-CCCceEEEEEECCHHHHHHHHHHCCCEECCEEEEEEECCHH
Confidence 45665 9999999999999999999998 446888999998877544
No 285
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.23 E-value=8.5e-07 Score=65.83 Aligned_cols=45 Identities=24% Similarity=0.508 Sum_probs=39.0
Q ss_pred CCCcccEEEEEECCHHHHHHHHH--ccCccCCcEEEEeecCCCCCCC
Q 021295 6 TGQPRGFGFVTYADPSVVDKVIE--DTHIINGKQVEIKRTIPKGAVG 50 (314)
Q Consensus 6 tg~~kG~aFV~f~~~~~a~~A~~--~~~~i~g~~i~v~~~~~~~~~~ 50 (314)
|+++++||||+|.+.++|++|++ +...|.++.|.|+++.++....
T Consensus 46 t~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~~~~ 92 (98)
T 2cpf_A 46 VLLSMGFGFVEYKKPEQAQKALKQLQGHTVDGHKLEVRISERATKPA 92 (98)
T ss_dssp CEEEEEEEEEEESSHHHHHHHHHHSTTCEETTEECEEECSSCSSCCC
T ss_pred CcCcccEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEEccCCCCCC
Confidence 66999999999999999999999 4568999999999987765443
No 286
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.23 E-value=3.3e-07 Score=71.37 Aligned_cols=45 Identities=11% Similarity=0.294 Sum_probs=38.9
Q ss_pred CCCCCCCCcccEEEEEECCHHHHHHHHH-ccCccCCcEEEEeecCC
Q 021295 1 MKDRKTGQPRGFGFVTYADPSVVDKVIE-DTHIINGKQVEIKRTIP 45 (314)
Q Consensus 1 m~d~~tg~~kG~aFV~f~~~~~a~~A~~-~~~~i~g~~i~v~~~~~ 45 (314)
|+|+.|+++||||||+|++.++|++||+ +.+.|.++.|.|.++.+
T Consensus 58 ~~~~~~g~~~G~afV~F~~~~~a~~Al~~~g~~~~gr~i~V~~a~~ 103 (124)
T 1wel_A 58 IAYGPNGKATGEGFVEFRNEADYKAALCRHKQYMGNRFIQVHPITK 103 (124)
T ss_dssp EEECTTSSEEEEEEEEBSSSHHHHHHHTSCSBCSTTSCBEEEEECH
T ss_pred EEECCCCCCCeEEEEEECCHHHHHHHHHhCCCeECCcEEEEEECCH
Confidence 3566899999999999999999999999 44588999999987754
No 287
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.22 E-value=7.9e-07 Score=66.70 Aligned_cols=46 Identities=24% Similarity=0.598 Sum_probs=40.3
Q ss_pred CCCCCCCcccEEEEEECCHHHHHHHHH--ccCccCCcEEEEeecCCCC
Q 021295 2 KDRKTGQPRGFGFVTYADPSVVDKVIE--DTHIINGKQVEIKRTIPKG 47 (314)
Q Consensus 2 ~d~~tg~~kG~aFV~f~~~~~a~~A~~--~~~~i~g~~i~v~~~~~~~ 47 (314)
+|+.|+++++||||+|.+.++|++|++ +...|.++.|.|+++.++.
T Consensus 42 ~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~ 89 (104)
T 1p1t_A 42 YDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVDNAASEK 89 (104)
T ss_dssp EETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSCSSSCBEEEETTCTT
T ss_pred eCCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEeCCCcc
Confidence 567899999999999999999999998 4558899999999887653
No 288
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=98.20 E-value=2.6e-06 Score=66.16 Aligned_cols=47 Identities=17% Similarity=0.274 Sum_probs=40.5
Q ss_pred CCCCCCCcccEEEEEECCHHHHHHHHH--ccCccCCcEEEEeecCCCCCC
Q 021295 2 KDRKTGQPRGFGFVTYADPSVVDKVIE--DTHIINGKQVEIKRTIPKGAV 49 (314)
Q Consensus 2 ~d~~tg~~kG~aFV~f~~~~~a~~A~~--~~~~i~g~~i~v~~~~~~~~~ 49 (314)
+|+ |+++++||||+|++.++|++|++ +...|.++.|.|+++.++...
T Consensus 69 ~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~~~~ 117 (124)
T 2kt5_A 69 YDR-SGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQLVASQIDL 117 (124)
T ss_dssp CCS-SSSCCSEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEEECCTTCC
T ss_pred ECC-CCCEeeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEEeCCCCCC
Confidence 466 89999999999999999999998 455899999999998776443
No 289
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.20 E-value=1.4e-06 Score=66.71 Aligned_cols=44 Identities=18% Similarity=0.308 Sum_probs=37.3
Q ss_pred CCCCCC---CCcccEEEEEECCHHHHHHHHHccCccCCcEEEEeecC
Q 021295 1 MKDRKT---GQPRGFGFVTYADPSVVDKVIEDTHIINGKQVEIKRTI 44 (314)
Q Consensus 1 m~d~~t---g~~kG~aFV~f~~~~~a~~A~~~~~~i~g~~i~v~~~~ 44 (314)
|+|+.| +++||||||+|+++++|++||+.++.++++.+.+..+.
T Consensus 40 ~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~~~~~G~~~~~~~~~ 86 (114)
T 2dnl_A 40 PHKAESKSYFPPKGYAFLLFQEESSVQALIDACLEEDGKLYLCVSSP 86 (114)
T ss_dssp TTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHSEEETTEEEEEECCS
T ss_pred eecCCCCCCCCcccEEEEEECCHHHHHHHHHhhhhcCCcEEEeccCC
Confidence 355566 79999999999999999999998878899998887543
No 290
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.18 E-value=2.1e-06 Score=65.41 Aligned_cols=43 Identities=16% Similarity=0.325 Sum_probs=37.2
Q ss_pred CCCcccEEEEEECCHHHHHHHHH--ccCccCCcEEEEeecCCCCC
Q 021295 6 TGQPRGFGFVTYADPSVVDKVIE--DTHIINGKQVEIKRTIPKGA 48 (314)
Q Consensus 6 tg~~kG~aFV~f~~~~~a~~A~~--~~~~i~g~~i~v~~~~~~~~ 48 (314)
+.+++|||||+|+++++|++||+ +...|.++.|.|+++.++..
T Consensus 59 ~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~gr~l~V~~a~~k~~ 103 (111)
T 2cpi_A 59 SQGPSASAYVTYIRSEDALRAIQCVNNVVVDGRTLKASLGTTKYC 103 (111)
T ss_dssp SSCCCEEEEEEESSHHHHHHHHHHHTTEEETTEEEEEESCCCCSC
T ss_pred cCCCCeEEEEEECcHHHHHHHHHHhCCCEECCEEEEEEecccccc
Confidence 34677999999999999999999 45589999999999887753
No 291
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=98.17 E-value=2.2e-06 Score=64.37 Aligned_cols=47 Identities=13% Similarity=0.217 Sum_probs=39.2
Q ss_pred CCCCCCCcccEEEEEECCHHHHHHHHH--ccCccCC---cEEEEeecCCCCCC
Q 021295 2 KDRKTGQPRGFGFVTYADPSVVDKVIE--DTHIING---KQVEIKRTIPKGAV 49 (314)
Q Consensus 2 ~d~~tg~~kG~aFV~f~~~~~a~~A~~--~~~~i~g---~~i~v~~~~~~~~~ 49 (314)
+|+ |+++|+||||+|.+.++|++||+ +...+.+ +.|.|+++.++...
T Consensus 49 ~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~gg~~~~l~V~~a~~~~~~ 100 (105)
T 2dnh_A 49 RGP-DGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGASSSLVVKFADTDKES 100 (105)
T ss_dssp ECS-SSCEEEEEEEEESSHHHHHHHHHHHSSCCCCTTCSSCCEEEESCSSCCC
T ss_pred ECC-CCCcCcEEEEEeCCHHHHHHHHHHHcCCccCCCCCccEEEEECccCccc
Confidence 455 89999999999999999999998 4456777 99999998876543
No 292
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.17 E-value=2.7e-06 Score=63.71 Aligned_cols=45 Identities=24% Similarity=0.493 Sum_probs=39.7
Q ss_pred CCCcccEEEEEECCHHHHHHHHH--ccCccCCcEEEEeecCCCCCCC
Q 021295 6 TGQPRGFGFVTYADPSVVDKVIE--DTHIINGKQVEIKRTIPKGAVG 50 (314)
Q Consensus 6 tg~~kG~aFV~f~~~~~a~~A~~--~~~~i~g~~i~v~~~~~~~~~~ 50 (314)
++++++||||+|.+.++|++||+ +...|.++.|.|+++.++....
T Consensus 51 ~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~~~~~~ 97 (103)
T 2d9p_A 51 GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQ 97 (103)
T ss_dssp SSSEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEECSSCCCCC
T ss_pred CCCcCEEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEecccccCC
Confidence 88999999999999999999998 5568999999999998775543
No 293
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=98.17 E-value=2.2e-06 Score=66.51 Aligned_cols=46 Identities=20% Similarity=0.572 Sum_probs=40.1
Q ss_pred CCCCCCCcccEEEEEECCHHHHHHHHH-ccCccCCcEEEEeecCCCC
Q 021295 2 KDRKTGQPRGFGFVTYADPSVVDKVIE-DTHIINGKQVEIKRTIPKG 47 (314)
Q Consensus 2 ~d~~tg~~kG~aFV~f~~~~~a~~A~~-~~~~i~g~~i~v~~~~~~~ 47 (314)
+|+.|+++++||||+|.+.++|++||+ +.+.|.++.|.|+++.+..
T Consensus 70 ~~~~~~~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~V~~a~~~~ 116 (124)
T 2jwn_A 70 CDKFSGHPKGYAYIEFAERNSVDAAVAMDETVFRGRTIKVLPKRTNM 116 (124)
T ss_dssp EECTTSSCEEEEEEEESSHHHHHHHHTTTTCEETTEECEEEESSCCC
T ss_pred ecCCCCCcccEEEEEECCHHHHHHHHhcCCCeECCeEEEEEECCCCC
Confidence 567899999999999999999999996 4458999999999887543
No 294
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.16 E-value=3.1e-06 Score=64.52 Aligned_cols=45 Identities=20% Similarity=0.379 Sum_probs=38.5
Q ss_pred CCCCCCCcccEEEEEECCHHHHHHHHH--ccCccCCcEEEEeecCCCC
Q 021295 2 KDRKTGQPRGFGFVTYADPSVVDKVIE--DTHIINGKQVEIKRTIPKG 47 (314)
Q Consensus 2 ~d~~tg~~kG~aFV~f~~~~~a~~A~~--~~~~i~g~~i~v~~~~~~~ 47 (314)
+|+ ++++++||||+|++.++|++||+ +.+.|.++.|.|+++....
T Consensus 49 ~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~ 95 (114)
T 2do0_A 49 EDK-DGKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRPMHVKMDERAL 95 (114)
T ss_dssp ECT-TCSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECSCCC
T ss_pred ECC-CCCeeeEEEEEECCHHHHHHHHHHhCCCEeCCCEEEEEEcccCC
Confidence 454 69999999999999999999998 5568999999999876543
No 295
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=98.15 E-value=7.9e-07 Score=76.94 Aligned_cols=45 Identities=18% Similarity=0.385 Sum_probs=39.4
Q ss_pred CCCCCCCCcccEEEEEECCHHHHHHHHHc--cCccCCcEEEEeecCC
Q 021295 1 MKDRKTGQPRGFGFVTYADPSVVDKVIED--THIINGKQVEIKRTIP 45 (314)
Q Consensus 1 m~d~~tg~~kG~aFV~f~~~~~a~~A~~~--~~~i~g~~i~v~~~~~ 45 (314)
|+|+.|+++||||||+|++.++|++||+. .+.|.++.|.|+++.+
T Consensus 103 ~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~~Gr~l~V~~a~~ 149 (229)
T 3q2s_C 103 FENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPVNK 149 (229)
T ss_dssp EECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCBTTBCCEEEECCH
T ss_pred EecCCCCccceEEEEEECCHHHHHHHHHHcCCCeECCEEeEEEECCC
Confidence 46889999999999999999999999984 4588999999987653
No 296
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.15 E-value=3.3e-06 Score=62.54 Aligned_cols=44 Identities=7% Similarity=-0.028 Sum_probs=36.8
Q ss_pred CCCCCCCCcccEEEEEECCHHHHHHHHH--ccCccCCcEEEEeecCCCC
Q 021295 1 MKDRKTGQPRGFGFVTYADPSVVDKVIE--DTHIINGKQVEIKRTIPKG 47 (314)
Q Consensus 1 m~d~~tg~~kG~aFV~f~~~~~a~~A~~--~~~~i~g~~i~v~~~~~~~ 47 (314)
++|+.| |+||||+|++.++|++|++ +...|.++.|.|+++.+..
T Consensus 46 ~~~~~~---rg~afV~f~~~~~A~~Ai~~l~g~~~~gr~l~V~~a~~~~ 91 (96)
T 2dgx_A 46 SPHTDY---QLKAVVQMENLQDAIGAVNSLHRYKIGSKKILVSLATGAS 91 (96)
T ss_dssp CSCCST---TCCEEEEESSHHHHHHHHHHHTTEEETTEEEEEEECCCSS
T ss_pred EeCCCC---CeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEcCCCC
Confidence 355555 8999999999999999998 4458999999999987654
No 297
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.15 E-value=9.5e-07 Score=67.56 Aligned_cols=46 Identities=15% Similarity=0.370 Sum_probs=40.1
Q ss_pred CCCCCCCCcccEEEEEECCHHHHHHHHH-ccCccCCcEEEEeecCCC
Q 021295 1 MKDRKTGQPRGFGFVTYADPSVVDKVIE-DTHIINGKQVEIKRTIPK 46 (314)
Q Consensus 1 m~d~~tg~~kG~aFV~f~~~~~a~~A~~-~~~~i~g~~i~v~~~~~~ 46 (314)
|+|+.|+++++||||+|.+.++|++||. +.+.|.++.|.|+++.++
T Consensus 58 ~~~~~~g~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~V~~a~~~ 104 (114)
T 2cq4_A 58 ISDRNSRRSKGIAYVEFCEIQSVPLAIGLTGQRLLGVPIIVQASQAE 104 (114)
T ss_dssp CCSCCSSSCCCCEEEEESCGGGHHHHHHHTTEEETTEEEEEEEHHHH
T ss_pred EecCCCCccCcEEEEEeCcHHHHHHHHHcCCCEeCCeEEEEEecCCC
Confidence 4688899999999999999999999995 455889999999987654
No 298
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=98.14 E-value=1.5e-06 Score=66.84 Aligned_cols=43 Identities=21% Similarity=0.518 Sum_probs=37.9
Q ss_pred CCCCCCCCcccEEEEEECCHHHHHHHHH--ccCccCCcEEEEeec
Q 021295 1 MKDRKTGQPRGFGFVTYADPSVVDKVIE--DTHIINGKQVEIKRT 43 (314)
Q Consensus 1 m~d~~tg~~kG~aFV~f~~~~~a~~A~~--~~~~i~g~~i~v~~~ 43 (314)
|+|+.|+++|+||||+|.+.++|++|++ +...|.++.|.|+++
T Consensus 73 ~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 117 (118)
T 2khc_A 73 FIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQVGTKRLKVQLK 117 (118)
T ss_dssp CCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCEETTEECCEEEC
T ss_pred EeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEec
Confidence 4678899999999999999999999998 455889999988875
No 299
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.13 E-value=1.7e-06 Score=65.13 Aligned_cols=43 Identities=14% Similarity=0.094 Sum_probs=37.1
Q ss_pred CCCCCCCcccEEEEEECCHHHHHHHHH-ccCccCCcEEEEeecCC
Q 021295 2 KDRKTGQPRGFGFVTYADPSVVDKVIE-DTHIINGKQVEIKRTIP 45 (314)
Q Consensus 2 ~d~~tg~~kG~aFV~f~~~~~a~~A~~-~~~~i~g~~i~v~~~~~ 45 (314)
+|+. +++||||||+|+++++|++||+ +.+.|.++.|.|+++..
T Consensus 45 ~d~~-g~~rG~aFV~F~~~e~a~~Ai~~~~~~~~gr~l~V~~~~~ 88 (103)
T 1s79_A 45 RTLH-KAFKGSIFVVFDSIESAKKFVETPGQKYKETDLLILFKDD 88 (103)
T ss_dssp CCCT-TSCCCEEEEEESSHHHHHHHHTSSCCCCTTTTCEEEEHHH
T ss_pred ECCC-CCCccEEEEEECCHHHHHHHHHcCCCEECCEEEEEEEchH
Confidence 5665 9999999999999999999999 45689999999987643
No 300
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=98.13 E-value=9.8e-07 Score=70.03 Aligned_cols=43 Identities=19% Similarity=0.334 Sum_probs=36.7
Q ss_pred CCCCCCCcccEEEEEECCHHHHHHHHH-ccCccCCcEEEEeecCC
Q 021295 2 KDRKTGQPRGFGFVTYADPSVVDKVIE-DTHIINGKQVEIKRTIP 45 (314)
Q Consensus 2 ~d~~tg~~kG~aFV~f~~~~~a~~A~~-~~~~i~g~~i~v~~~~~ 45 (314)
+|+. +++||||||+|+++++|++||+ +...|.++.|+|.++.+
T Consensus 81 ~d~~-g~srG~aFV~F~~~e~a~~Al~~~g~~l~gr~i~V~~a~~ 124 (136)
T 2hgl_A 81 YTRE-GRQSGEAFVELGSEDDVKMALKKDRESMGHRYIEVFKSHR 124 (136)
T ss_dssp ECSS-SCEEEEEEEECSSHHHHHHHHTTTEEESSSSEEEEEECCH
T ss_pred ECCC-CCCCeEEEEEECCHHHHHHHHhcCCCEECCEEEEEEECCh
Confidence 4665 9999999999999999999998 44588999999887643
No 301
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.13 E-value=4.8e-07 Score=70.57 Aligned_cols=42 Identities=19% Similarity=0.402 Sum_probs=35.0
Q ss_pred CCCCCCCcccEEEEEECCHHHHHHHHH-ccCccCCcEEEEeecC
Q 021295 2 KDRKTGQPRGFGFVTYADPSVVDKVIE-DTHIINGKQVEIKRTI 44 (314)
Q Consensus 2 ~d~~tg~~kG~aFV~f~~~~~a~~A~~-~~~~i~g~~i~v~~~~ 44 (314)
+| .|+++||||||+|+++++|++||+ +.+.|.++.|+|..+.
T Consensus 61 ~d-~~gr~~G~aFV~F~~~~~A~~Al~~~~~~l~gR~i~V~~a~ 103 (123)
T 2dha_A 61 TY-PDGRPTGDAFVLFACEEYAQNALRKHKDLLGKRYIELFRST 103 (123)
T ss_dssp EC-TTSCEEEEEEECCSSHHHHHHHHTTTTEESSSCEECCEEEC
T ss_pred EC-CCCCEeeEEEEEECCHHHHHHHHHhCCCeeCCeEEEEEECC
Confidence 45 599999999999999999999998 4457788888776553
No 302
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=98.12 E-value=8.3e-07 Score=70.72 Aligned_cols=47 Identities=17% Similarity=0.169 Sum_probs=39.4
Q ss_pred CCCCCCCCcccEEEEEECCHHHHHHHHH-ccCccCCcEEEEeecCCCCC
Q 021295 1 MKDRKTGQPRGFGFVTYADPSVVDKVIE-DTHIINGKQVEIKRTIPKGA 48 (314)
Q Consensus 1 m~d~~tg~~kG~aFV~f~~~~~a~~A~~-~~~~i~g~~i~v~~~~~~~~ 48 (314)
|+|+. +++||||||+|+++++|++||+ +.+.|.++.|+|..+.+++.
T Consensus 78 ~~d~~-g~srGfaFV~F~~~e~A~~Al~~~g~~l~gR~i~V~~a~~~~~ 125 (139)
T 2hgn_A 78 EIGPD-GRVTGEADVEFATHEEAVAAMSKDRANMQHRYIELFLNSTTGA 125 (139)
T ss_dssp CCSSS-SCSSCCCEEECSHHHHHHHHTTCCSCSSSSCCCCCEECCCSCC
T ss_pred EECCC-CCCceEEEEEeCCHHHHHHHHhhCCCEECCEEEEEEECCCCCC
Confidence 46764 9999999999999999999997 55688999999988776543
No 303
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=98.11 E-value=2.2e-06 Score=62.05 Aligned_cols=45 Identities=18% Similarity=0.530 Sum_probs=38.3
Q ss_pred CCCCCCC-cccEEEEEECCHHHHHHHHH--ccCccCCcEEEEeecCCC
Q 021295 2 KDRKTGQ-PRGFGFVTYADPSVVDKVIE--DTHIINGKQVEIKRTIPK 46 (314)
Q Consensus 2 ~d~~tg~-~kG~aFV~f~~~~~a~~A~~--~~~~i~g~~i~v~~~~~~ 46 (314)
+|+.|+. +++||||+|.+.++|++|++ +...+.++.|.|+++.+.
T Consensus 38 ~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~ 85 (88)
T 4a8x_A 38 VERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEITATAVLAP 85 (88)
T ss_dssp EETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEECCC
T ss_pred eCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeECCeEEEEEECCCC
Confidence 4555555 99999999999999999998 566899999999988765
No 304
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=98.11 E-value=2.4e-06 Score=64.39 Aligned_cols=42 Identities=19% Similarity=0.318 Sum_probs=37.2
Q ss_pred CCCCCCCcccEEEEEECCHHHHHHHHH--ccCccCCcEEEEeecC
Q 021295 2 KDRKTGQPRGFGFVTYADPSVVDKVIE--DTHIINGKQVEIKRTI 44 (314)
Q Consensus 2 ~d~~tg~~kG~aFV~f~~~~~a~~A~~--~~~~i~g~~i~v~~~~ 44 (314)
+|+ |+++++||||+|.+.++|++|++ +...|.++.|.|+++.
T Consensus 63 ~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~ 106 (107)
T 3ulh_A 63 YDR-SGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMNIQLVT 106 (107)
T ss_dssp ECT-TSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEEC
T ss_pred ECC-CCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEeC
Confidence 455 99999999999999999999999 5568899999998864
No 305
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=98.10 E-value=1.7e-06 Score=65.46 Aligned_cols=44 Identities=20% Similarity=0.334 Sum_probs=36.4
Q ss_pred CCCCCCCCcccEEEEEECCHHHHHHHHH-ccCccCCcEEEEeecCC
Q 021295 1 MKDRKTGQPRGFGFVTYADPSVVDKVIE-DTHIINGKQVEIKRTIP 45 (314)
Q Consensus 1 m~d~~tg~~kG~aFV~f~~~~~a~~A~~-~~~~i~g~~i~v~~~~~ 45 (314)
|+|+. +++||||||+|++.++|++||+ +.+.|.++.|.|.++.+
T Consensus 47 ~~~~~-g~~~G~afV~F~~~~~a~~Al~~~~~~~~gr~i~V~~a~~ 91 (107)
T 2lmi_A 47 LLNRD-GKRRGDALIEMESEQDVQKALEKHRMYMGQRYVEVYEINN 91 (107)
T ss_dssp CCCTT-STTCSEEEEEBSSHHHHHHHHTTTTCCSSSSCCCCEECCH
T ss_pred EECCC-CCEeeEEEEEECCHHHHHHHHHhCcceeCCeEEEEEECCH
Confidence 35665 9999999999999999999998 44578888888877653
No 306
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.10 E-value=9.5e-07 Score=63.72 Aligned_cols=42 Identities=21% Similarity=0.493 Sum_probs=34.1
Q ss_pred CCCCCCCCcccEEEEEECCHHHHHHHHHc--cCccCCcEEEEee
Q 021295 1 MKDRKTGQPRGFGFVTYADPSVVDKVIED--THIINGKQVEIKR 42 (314)
Q Consensus 1 m~d~~tg~~kG~aFV~f~~~~~a~~A~~~--~~~i~g~~i~v~~ 42 (314)
++|+.|+++++||||+|++.++|++|++. ...|.++.|++.+
T Consensus 38 ~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~~ 81 (85)
T 1x4e_A 38 ILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQAQMAKQSG 81 (85)
T ss_dssp ECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTCCEESCCSSC
T ss_pred EecCCCCCcCcEEEEEECCHHHHHHHHHHhcCCeEeeEEEeecC
Confidence 36778999999999999999999999984 3466776666554
No 307
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=97.38 E-value=4e-07 Score=69.96 Aligned_cols=49 Identities=22% Similarity=0.463 Sum_probs=42.0
Q ss_pred CCCCCCCCcccEEEEEECCHHHHHHHHH--ccCccCCcEEEEeecCCCCCC
Q 021295 1 MKDRKTGQPRGFGFVTYADPSVVDKVIE--DTHIINGKQVEIKRTIPKGAV 49 (314)
Q Consensus 1 m~d~~tg~~kG~aFV~f~~~~~a~~A~~--~~~~i~g~~i~v~~~~~~~~~ 49 (314)
|+|+.|+++|+||||+|++.++|++|++ +...|.++.|.|+++.++...
T Consensus 48 ~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~~~~ 98 (116)
T 2lcw_A 48 YTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFSGNPIKVSFATRRADF 98 (116)
Confidence 3567899999999999999999999998 455889999999998776543
No 308
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=98.09 E-value=1.9e-06 Score=66.57 Aligned_cols=43 Identities=19% Similarity=0.325 Sum_probs=36.4
Q ss_pred CCCCCCCcccEEEEEECCHHHHHHHHH-ccCccCCcEEEEeecCC
Q 021295 2 KDRKTGQPRGFGFVTYADPSVVDKVIE-DTHIINGKQVEIKRTIP 45 (314)
Q Consensus 2 ~d~~tg~~kG~aFV~f~~~~~a~~A~~-~~~~i~g~~i~v~~~~~ 45 (314)
+|+. +++||||||+|++.++|++||+ +.+.|.++.|.|.++.+
T Consensus 54 ~~~~-g~~~G~afV~F~~~~~a~~Al~~~g~~~~gr~i~V~~a~~ 97 (118)
T 2db1_A 54 YTRE-GRQSGEAFVELESEDDVKLALKKDRESMGHRYIEVFKSHR 97 (118)
T ss_dssp ECSS-SCEEEEEEEEBSSHHHHHHHGGGTTEEETTEEEEEEEECH
T ss_pred ECCC-CCCCeEEEEEECCHHHHHHHHhcCCCeECCeEEEEEECCH
Confidence 4554 9999999999999999999998 44588999999887643
No 309
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.09 E-value=6.1e-06 Score=61.69 Aligned_cols=43 Identities=23% Similarity=0.598 Sum_probs=37.4
Q ss_pred CcccEEEEEECCHHHHHHHHH--ccCccCCcEEEEeecCCCCCCC
Q 021295 8 QPRGFGFVTYADPSVVDKVIE--DTHIINGKQVEIKRTIPKGAVG 50 (314)
Q Consensus 8 ~~kG~aFV~f~~~~~a~~A~~--~~~~i~g~~i~v~~~~~~~~~~ 50 (314)
.+++||||+|.+.++|++||+ +...|.++.|.|+++.++....
T Consensus 53 ~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~~~ 97 (103)
T 2cq3_A 53 GSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNATARVMTN 97 (103)
T ss_dssp TTCCEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECCSSCCCC
T ss_pred CCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEcccCCCCC
Confidence 489999999999999999998 4558999999999998775544
No 310
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.09 E-value=6.2e-06 Score=61.65 Aligned_cols=42 Identities=14% Similarity=0.264 Sum_probs=36.2
Q ss_pred CcccEEEEEECCHHHHHHHHH--ccCccCCcEEEEeecCCCCCC
Q 021295 8 QPRGFGFVTYADPSVVDKVIE--DTHIINGKQVEIKRTIPKGAV 49 (314)
Q Consensus 8 ~~kG~aFV~f~~~~~a~~A~~--~~~~i~g~~i~v~~~~~~~~~ 49 (314)
.+|+||||+|.+.++|++|++ +...|.++.|.|+++.++...
T Consensus 53 ~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~~~ 96 (103)
T 2cqi_A 53 SNDPYCFVEFYEHRDAAAALAAMNGRKILGKEVKVNWATTPSSQ 96 (103)
T ss_dssp SSCCEEEEEESSHHHHHHHHHHHTTEEETTEEEEEEECCCTTCC
T ss_pred CCCCEEEEEECCHHHHHHHHHHhCCCCcCCCeEEEEECCCCccc
Confidence 379999999999999999998 445889999999998876543
No 311
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.08 E-value=5.2e-06 Score=62.19 Aligned_cols=42 Identities=10% Similarity=0.135 Sum_probs=37.2
Q ss_pred CCcccEEEEEECCHHHHHHHHHccCccCCcEEEEeecCCCCC
Q 021295 7 GQPRGFGFVTYADPSVVDKVIEDTHIINGKQVEIKRTIPKGA 48 (314)
Q Consensus 7 g~~kG~aFV~f~~~~~a~~A~~~~~~i~g~~i~v~~~~~~~~ 48 (314)
+++||||||+|++.++|++||+..+.+.++.|.|+++.++..
T Consensus 51 ~~~rGfaFVeF~~~~~A~~Ai~~~~~~~g~~l~V~~a~~~~~ 92 (100)
T 2d9o_A 51 SKKPGTAVVEFATVKAAELAVQNEVGLVDNPLKISWLEGQPQ 92 (100)
T ss_dssp SSSSSEEEEEESCHHHHHHHHHTCCBCSSSBCEEECSSCCCC
T ss_pred cCCCCEEEEEECCHHHHHHHHHhcCCCCCCeEEEEEccCCCC
Confidence 478999999999999999999988888899999999876643
No 312
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.07 E-value=3.1e-06 Score=64.69 Aligned_cols=46 Identities=22% Similarity=0.296 Sum_probs=39.8
Q ss_pred CCCCCcccEEEEEECCHHHHHHHHH--ccCccCCcEEEEeecCCCCCC
Q 021295 4 RKTGQPRGFGFVTYADPSVVDKVIE--DTHIINGKQVEIKRTIPKGAV 49 (314)
Q Consensus 4 ~~tg~~kG~aFV~f~~~~~a~~A~~--~~~~i~g~~i~v~~~~~~~~~ 49 (314)
..|+++|+||||+|.+.++|++||+ +...|.++.|.|+++.++...
T Consensus 61 ~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~a~~~~~~ 108 (115)
T 2cpx_A 61 MMTGRMRGQAFITFPNKEIAWQALHLVNGYKLYGKILVIEFGKNKKQR 108 (115)
T ss_dssp EECSSSCSEEEEECSSHHHHHHHHHHSTTCBCSSCBCEEEECCCCSCC
T ss_pred cCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEccCCCCC
Confidence 3489999999999999999999998 455889999999998876544
No 313
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=98.05 E-value=4e-06 Score=63.17 Aligned_cols=44 Identities=16% Similarity=0.366 Sum_probs=38.0
Q ss_pred CCCCCcccEEEEEECCHHHHHHHHH--ccCccCCc-EEEEeecCCCC
Q 021295 4 RKTGQPRGFGFVTYADPSVVDKVIE--DTHIINGK-QVEIKRTIPKG 47 (314)
Q Consensus 4 ~~tg~~kG~aFV~f~~~~~a~~A~~--~~~~i~g~-~i~v~~~~~~~ 47 (314)
+.|+++||||||+|.+.++|++|++ +...|.++ .|.|+++...+
T Consensus 55 ~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~~~g~~~l~V~~a~~~~ 101 (105)
T 2nlw_A 55 EEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTFRVNLFTDFD 101 (105)
T ss_dssp CBTTBSCCEEEEEECSSSHHHHHHHHCSSEECSTTCEEEEECSCCCC
T ss_pred CCCCCeeeEEEEEECCHHHHHHHHHHhCCcccCCCceEEEEEcchHh
Confidence 4689999999999999999999999 44588998 99999876543
No 314
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=98.04 E-value=3.7e-06 Score=65.84 Aligned_cols=44 Identities=11% Similarity=0.206 Sum_probs=38.2
Q ss_pred CCCCCcccEEEEEECCHHHHHHHHH--ccCccCCcEEEEeecCCCC
Q 021295 4 RKTGQPRGFGFVTYADPSVVDKVIE--DTHIINGKQVEIKRTIPKG 47 (314)
Q Consensus 4 ~~tg~~kG~aFV~f~~~~~a~~A~~--~~~~i~g~~i~v~~~~~~~ 47 (314)
+.|+++||||||+|.+.++|++|++ +...|.++.|.|+++.++.
T Consensus 66 ~~~~~~rG~aFV~F~~~~~A~~Ai~~lng~~l~gr~l~V~~a~~~~ 111 (127)
T 2a3j_A 66 DLSDDNSGKAYIVFATQESAQAFVEAFQGYPFQGNPLVITFSETPQ 111 (127)
T ss_dssp CCCCSSCCCEEEEESSHHHHHHHHHHSTTCCCTTSCCEEEECCCCC
T ss_pred ccCCCcCCEEEEEECCHHHHHHHHHHHCCCEeCCCEEEEEEccCcc
Confidence 3578999999999999999999998 4558899999999987653
No 315
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.04 E-value=6.7e-06 Score=62.20 Aligned_cols=44 Identities=16% Similarity=0.269 Sum_probs=38.0
Q ss_pred CCCCcccEEEEEECCHHHHHHHHH--ccCccCCcEEEEeecCCCCC
Q 021295 5 KTGQPRGFGFVTYADPSVVDKVIE--DTHIINGKQVEIKRTIPKGA 48 (314)
Q Consensus 5 ~tg~~kG~aFV~f~~~~~a~~A~~--~~~~i~g~~i~v~~~~~~~~ 48 (314)
.+.++|+||||+|++.++|++||+ +...|.++.|.|+++.++..
T Consensus 56 ~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~~~~ 101 (109)
T 1x4a_A 56 NRRGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVEFPRSGRG 101 (109)
T ss_dssp CSSSSSCCEEEEESCHHHHHHHHHHHTTCEETTEECEEECCCCCCC
T ss_pred ECCCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEcccCCC
Confidence 466789999999999999999997 55689999999999877644
No 316
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=98.04 E-value=4.8e-06 Score=60.85 Aligned_cols=44 Identities=16% Similarity=0.527 Sum_probs=38.5
Q ss_pred CCCCcccEEEEEECCHHHHHHHHH--ccCccCCcEEEEeecCCCCC
Q 021295 5 KTGQPRGFGFVTYADPSVVDKVIE--DTHIINGKQVEIKRTIPKGA 48 (314)
Q Consensus 5 ~tg~~kG~aFV~f~~~~~a~~A~~--~~~~i~g~~i~v~~~~~~~~ 48 (314)
.++++|+||||+|.+.++|++|++ +...|.++.|.|+++.+...
T Consensus 43 ~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~~~~ 88 (92)
T 2dgv_A 43 ENGKSKGCGVVKFESPEVAERACRMMNGMKLSGREIDVRIDRNASG 88 (92)
T ss_dssp SSSCEEEEEEEEESSHHHHHHHHHHHTTCCBTTBCCCCEECSCCSS
T ss_pred cCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcCCCCC
Confidence 478999999999999999999998 55689999999999877644
No 317
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=98.03 E-value=3.4e-06 Score=68.99 Aligned_cols=49 Identities=24% Similarity=0.402 Sum_probs=41.3
Q ss_pred CCCCCCCCcccEEEEEECCHHHHHHHHH--ccCccCCcEEEEeecCCCCCC
Q 021295 1 MKDRKTGQPRGFGFVTYADPSVVDKVIE--DTHIINGKQVEIKRTIPKGAV 49 (314)
Q Consensus 1 m~d~~tg~~kG~aFV~f~~~~~a~~A~~--~~~~i~g~~i~v~~~~~~~~~ 49 (314)
++|+.|+++++||||+|.+.++|++||+ +...|.++.|.|.++.++...
T Consensus 105 ~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~~~~ 155 (165)
T 1rk8_A 105 NLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDWCFVKGPK 155 (165)
T ss_dssp EECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEESEECC--
T ss_pred EecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEecCCCCC
Confidence 3577899999999999999999999998 455899999999998766543
No 318
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=98.01 E-value=6e-06 Score=60.87 Aligned_cols=44 Identities=23% Similarity=0.502 Sum_probs=38.3
Q ss_pred CCCCcccEEEEEECCHHHHHHHHHc--cCccCCcEEEEeecCCCCC
Q 021295 5 KTGQPRGFGFVTYADPSVVDKVIED--THIINGKQVEIKRTIPKGA 48 (314)
Q Consensus 5 ~tg~~kG~aFV~f~~~~~a~~A~~~--~~~i~g~~i~v~~~~~~~~ 48 (314)
.+++++|||||+|.+.++|++|++. ...|.++.|.|+++.++..
T Consensus 48 ~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~ 93 (96)
T 1fjc_A 48 QDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYTGEKGG 93 (96)
T ss_dssp ETTEEEEEEEEEESSHHHHHHHHHHTTEEEETTEEEEEEECSSSCC
T ss_pred CCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEcCCCCC
Confidence 5789999999999999999999994 4488999999999876643
No 319
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=98.01 E-value=4e-06 Score=61.66 Aligned_cols=42 Identities=31% Similarity=0.668 Sum_probs=36.2
Q ss_pred CCCCCCCcccEEEEEECCHHHHHHHHH--ccCccCCcEEEEeecC
Q 021295 2 KDRKTGQPRGFGFVTYADPSVVDKVIE--DTHIINGKQVEIKRTI 44 (314)
Q Consensus 2 ~d~~tg~~kG~aFV~f~~~~~a~~A~~--~~~~i~g~~i~v~~~~ 44 (314)
+|+ ++++|+||||+|+++++|++|++ +...|.++.|.|+++.
T Consensus 50 ~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~ 93 (95)
T 2ywk_A 50 KDR-EGKPKSFGFVCFKHPESVSYAIALLNGIRLYGRPINVSGPS 93 (95)
T ss_dssp ECT-TSCEEEEEEEEESSTHHHHHHHHHHTTCEETTEECEEECCC
T ss_pred ECC-CCCCceEEEEEECCHHHHHHHHHHhCCCEECCCEEEEEEcC
Confidence 354 48999999999999999999998 5568999999998764
No 320
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=97.97 E-value=3.2e-06 Score=67.30 Aligned_cols=45 Identities=16% Similarity=0.316 Sum_probs=39.1
Q ss_pred CCCCCcccEEEEEECCHHHHHHHHH--ccCccCCcEEEEeecCCCCC
Q 021295 4 RKTGQPRGFGFVTYADPSVVDKVIE--DTHIINGKQVEIKRTIPKGA 48 (314)
Q Consensus 4 ~~tg~~kG~aFV~f~~~~~a~~A~~--~~~~i~g~~i~v~~~~~~~~ 48 (314)
+.|++++|||||+|.+.++|++||+ +...|.++.|.|+++.+...
T Consensus 86 ~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l~V~~a~~~~~ 132 (143)
T 3egn_A 86 MKEGRMKGQAFIGLPNEKAAAKALKEANGYVLFGKPMVVQFARSARP 132 (143)
T ss_dssp EEETTTEEEEEEECSSHHHHHHHHHHHTTBEETTEECEEEECCCSCC
T ss_pred ccCCCcccEEEEEeCCHHHHHHHHHHhCCCEeCCcEEEEEECCCCCC
Confidence 4689999999999999999999998 45589999999999876543
No 321
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=97.97 E-value=6.3e-05 Score=54.98 Aligned_cols=69 Identities=6% Similarity=0.229 Sum_probs=56.3
Q ss_pred ceEEEcCCCCCCCHHHHHHHHhccCCeEEEEEeecCCCCC--cceEEEEEeCChHHHHHHHHhcCCeeeCC
Q 021295 57 KKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSR--SRGFGFITFDTEQAVDDLLAKGNKLELAG 125 (314)
Q Consensus 57 ~~l~V~nLp~~~~e~~l~~~F~~~G~v~~v~i~~~~~~g~--~rG~afV~F~~~~~a~~a~~~l~~~~~~g 125 (314)
.+|.|++||..+||+++.+.+....++.....+.-+.+.+ .-.-|+|.|++.+++.+..+.+++..+.+
T Consensus 2 ~KvVIRrLPP~LteeeF~~~l~~~~~~d~~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~~~~g~~F~D 72 (91)
T 1uw4_A 2 SKVVIRRLPPTLTKEQLQEHLQPMPEHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRFDGYVFLD 72 (91)
T ss_dssp CEEEEEEECTTCCHHHHHHHHCSCCCEEEEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHHHTTCEEEC
T ss_pred cEEEEeCCCCCCCHHHHHHHhcCcccceEEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEEEc
Confidence 5789999999999999999999988777776665543322 23469999999999999999999877654
No 322
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.97 E-value=3.2e-05 Score=57.59 Aligned_cols=75 Identities=15% Similarity=0.218 Sum_probs=63.7
Q ss_pred cceEEEcCCCCCC-C----HHHHHHHHhccCCeEEEEEeecCCCCCcceEEEEEeCChHHHHHHHHhcCCeeeCCeEEEE
Q 021295 56 TKKIFVGGIPSSV-N----EDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEV 130 (314)
Q Consensus 56 ~~~l~V~nLp~~~-~----e~~l~~~F~~~G~v~~v~i~~~~~~g~~rG~afV~F~~~~~a~~a~~~l~~~~~~gr~l~V 130 (314)
+++|+|.||+.++ + .++|+++|.+|.++.....++.- | =..|.|.++++|.+|-..||...+.+++|+|
T Consensus 5 pntLiitnl~~~vF~~~~lk~~~e~Lf~~~~~~~tF~~lkSF-----R-Rirv~F~~~~~A~~AR~~Lh~~~f~g~~~r~ 78 (104)
T 1wey_A 5 SSGLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYFKSF-----K-RVRINFSNPLSAADARLRLHKTEFLGKEMKL 78 (104)
T ss_dssp CCEEEEECCCGGGGSTTTHHHHHHHHHHTTCSSCEEEEETTT-----T-EEEEECSSTTHHHHHHHTSTTSEETTEECEE
T ss_pred CceEEEecCCHHHcCCHHHHHHHHHHHHhhCcCcceeecCcc-----e-EEEEEeCChHHHHHHHHHhccceecCceeEE
Confidence 5789999998876 2 25778999999999888777652 2 4799999999999999999999999999999
Q ss_pred eecCCC
Q 021295 131 KKAEPK 136 (314)
Q Consensus 131 ~~a~~~ 136 (314)
-++.+.
T Consensus 79 YFgq~~ 84 (104)
T 1wey_A 79 YFAQTL 84 (104)
T ss_dssp ECCCCS
T ss_pred EecCCC
Confidence 998754
No 323
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.95 E-value=8e-06 Score=62.24 Aligned_cols=43 Identities=26% Similarity=0.426 Sum_probs=33.6
Q ss_pred CCCCCCCcccEEEEEECCHHHHHHHHHc--cCcc--------CCcEEEEeecCC
Q 021295 2 KDRKTGQPRGFGFVTYADPSVVDKVIED--THII--------NGKQVEIKRTIP 45 (314)
Q Consensus 2 ~d~~tg~~kG~aFV~f~~~~~a~~A~~~--~~~i--------~g~~i~v~~~~~ 45 (314)
+|+ |+++|+||||+|.+.++|++|++. ...| .++.|.|+++.+
T Consensus 59 ~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~~~~~~~~~~l~v~~a~p 111 (114)
T 1x5o_A 59 RDS-SGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSAPTEPLLCKFSGP 111 (114)
T ss_dssp ECS-SSCEEEEEEEEESCHHHHHHHHHHHBTCCCCCCTTSCCCSSCBEEEECCC
T ss_pred ECC-CCCcceEEEEEECCHHHHHHHHHHhCCCEEcCCccccCCCCceeEEccCC
Confidence 466 899999999999999999999983 3345 456666666654
No 324
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.94 E-value=1.3e-05 Score=61.11 Aligned_cols=43 Identities=23% Similarity=0.373 Sum_probs=36.8
Q ss_pred CcccEEEEEECCHHHHHHHHH--ccCccCCcEEEEeecCCCCCCC
Q 021295 8 QPRGFGFVTYADPSVVDKVIE--DTHIINGKQVEIKRTIPKGAVG 50 (314)
Q Consensus 8 ~~kG~aFV~f~~~~~a~~A~~--~~~~i~g~~i~v~~~~~~~~~~ 50 (314)
.+||||||+|.+.++|++|++ +...|.++.|.|+++.++....
T Consensus 62 ~~~G~afV~f~~~~~A~~Ai~~lng~~~~gr~l~v~~a~~~~~~~ 106 (112)
T 2dit_A 62 HPDGVASVSFRDPEEADYCIQTLDGRWFGGRQITAQAWDGTTDYQ 106 (112)
T ss_dssp CTTCEEEEECSCHHHHHHHHHHSTTCEETTEECEEEECCSCCCSS
T ss_pred CCCEEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEEeCCCCCcc
Confidence 489999999999999999998 4458899999999988765443
No 325
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=97.93 E-value=8e-06 Score=61.71 Aligned_cols=44 Identities=9% Similarity=-0.019 Sum_probs=36.9
Q ss_pred CCCC-CCCcccEEEEEECCHHHHHHHHH--ccCccCCcEEEEeecCC
Q 021295 2 KDRK-TGQPRGFGFVTYADPSVVDKVIE--DTHIINGKQVEIKRTIP 45 (314)
Q Consensus 2 ~d~~-tg~~kG~aFV~f~~~~~a~~A~~--~~~~i~g~~i~v~~~~~ 45 (314)
+|+. +++++|||||+|+++++|++|++ +...+.++.|.+.++.+
T Consensus 47 ~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~~Gr~i~v~~a~~ 93 (105)
T 2pe8_A 47 EIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYFGGRVVKACFYNL 93 (105)
T ss_dssp ECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCH
T ss_pred cCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCEECCcEEEEEEcCH
Confidence 4544 47899999999999999999998 45589999999988754
No 326
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=97.93 E-value=5.5e-06 Score=59.14 Aligned_cols=37 Identities=16% Similarity=0.485 Sum_probs=30.6
Q ss_pred CCCCCcccEEEEEECCHHHHHHHHHc--cCccCCc-EEEE
Q 021295 4 RKTGQPRGFGFVTYADPSVVDKVIED--THIINGK-QVEI 40 (314)
Q Consensus 4 ~~tg~~kG~aFV~f~~~~~a~~A~~~--~~~i~g~-~i~v 40 (314)
+.|+++||||||+|.+.++|++|++. ...+.++ +|.|
T Consensus 41 ~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~~l~V 80 (81)
T 2krb_A 41 EEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTFRV 80 (81)
T ss_dssp CBTTBCCCEEEEEESSHHHHHHHHTTSSSCCCSSSSCCCC
T ss_pred CCCCcEeEEEEEEECCHHHHHHHHHHhcCcccCCceeEEe
Confidence 46899999999999999999999994 3467776 6654
No 327
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.90 E-value=1.3e-05 Score=58.90 Aligned_cols=46 Identities=20% Similarity=0.398 Sum_probs=37.6
Q ss_pred CCCCCCCCcccEEEEEECCHHHHHHHHH-ccCccCCcEEEEeecCCCCCC
Q 021295 1 MKDRKTGQPRGFGFVTYADPSVVDKVIE-DTHIINGKQVEIKRTIPKGAV 49 (314)
Q Consensus 1 m~d~~tg~~kG~aFV~f~~~~~a~~A~~-~~~~i~g~~i~v~~~~~~~~~ 49 (314)
|+|+.|++ ||||+|.+.++|++||+ +.+.|.++.|.|+++.++...
T Consensus 39 ~~~~~~g~---~afV~f~~~~~a~~ai~l~g~~~~g~~l~V~~a~~~~~~ 85 (94)
T 2e5g_A 39 VMDKDKGV---FAIVEMGDVGAREAVLSQSQHSLGGHRLRVRPREQKEFQ 85 (94)
T ss_dssp EECSSSCC---EEEEEESSHHHHHHHHTCSCCEETTEECCCBCSCCSCCC
T ss_pred EEcCCCCc---EEEEEECCHHHHHHHHhcCCeEECCEEEEEEECCcCCCC
Confidence 35666776 99999999999999999 445889999999987765443
No 328
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=97.89 E-value=1.2e-05 Score=61.47 Aligned_cols=41 Identities=15% Similarity=0.286 Sum_probs=35.0
Q ss_pred CCCcccEEEEEECCHHHHHHHHH--ccCccCCcEEEEeecCCC
Q 021295 6 TGQPRGFGFVTYADPSVVDKVIE--DTHIINGKQVEIKRTIPK 46 (314)
Q Consensus 6 tg~~kG~aFV~f~~~~~a~~A~~--~~~~i~g~~i~v~~~~~~ 46 (314)
+.++||||||+|++.++|++||+ +..+|.++.|.|+++...
T Consensus 63 ~~~~rGfaFV~F~~~e~A~~Ai~~lng~~l~Gr~i~V~~a~~~ 105 (111)
T 2jvr_A 63 TRDFDGTGALEFPSEEILVEALERLNNIEFRGSVITVERDDNP 105 (111)
T ss_dssp SCSSSCCEEEEESSHHHHHHHHHHTTTEEETTEEEEEEESCC-
T ss_pred cCCCCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECCCC
Confidence 34689999999999999999998 445899999999987654
No 329
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.89 E-value=9.9e-06 Score=59.92 Aligned_cols=42 Identities=12% Similarity=0.249 Sum_probs=36.7
Q ss_pred CCCcccEEEEEECCHHHHHHHHH--ccCccCCcEEEEeecCCCC
Q 021295 6 TGQPRGFGFVTYADPSVVDKVIE--DTHIINGKQVEIKRTIPKG 47 (314)
Q Consensus 6 tg~~kG~aFV~f~~~~~a~~A~~--~~~~i~g~~i~v~~~~~~~ 47 (314)
+.++++||||+|.+.++|++|++ +...|.++.|.|+++.++.
T Consensus 52 ~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~ 95 (97)
T 2e5j_A 52 WQGPRRRAFLHYPDSAAAQQAVSCLQGLRLGTDTLRVALARQQR 95 (97)
T ss_dssp EETTTTEEEEECSSHHHHHHHHHHHTTCCSSSSCCEEEECCCCC
T ss_pred cCCCCcEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcCCCC
Confidence 55789999999999999999997 5568999999999987654
No 330
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.87 E-value=1.2e-05 Score=60.69 Aligned_cols=42 Identities=10% Similarity=0.190 Sum_probs=35.4
Q ss_pred cccEEEEEECCHHHHHHHHHcc----CccCCcEEEEeecCCCCCCC
Q 021295 9 PRGFGFVTYADPSVVDKVIEDT----HIINGKQVEIKRTIPKGAVG 50 (314)
Q Consensus 9 ~kG~aFV~f~~~~~a~~A~~~~----~~i~g~~i~v~~~~~~~~~~ 50 (314)
.||||||+|+++++|++|++.+ .+|.+++|.|+++.++....
T Consensus 51 ~kGfaFVeF~~~~~A~~Ai~~l~~~~~~l~Gr~l~V~~A~~~~~~~ 96 (105)
T 1sjq_A 51 GKNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQFSNHKELKT 96 (105)
T ss_dssp TTTEEEEEESSHHHHHHHHHHHTTSCCEETTEECCBCCCSSSSCCC
T ss_pred CCCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEEcCCCCCCc
Confidence 4899999999999999999832 47899999999988765544
No 331
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.87 E-value=2.2e-05 Score=57.97 Aligned_cols=43 Identities=19% Similarity=0.367 Sum_probs=36.7
Q ss_pred CCcccEEEEEECCHHHHHHHHH--ccCccCCcEEEEeecCCCCCC
Q 021295 7 GQPRGFGFVTYADPSVVDKVIE--DTHIINGKQVEIKRTIPKGAV 49 (314)
Q Consensus 7 g~~kG~aFV~f~~~~~a~~A~~--~~~~i~g~~i~v~~~~~~~~~ 49 (314)
.++|+||||+|.+.++|++||+ +...|.++.|.|+++.++...
T Consensus 46 ~~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~a~~~~~~ 90 (97)
T 1x5p_A 46 DPPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIARKQPML 90 (97)
T ss_dssp ETTTTEEEEEESSHHHHHHHHHHTTTEEETTEEEEEECCSSCCCC
T ss_pred cCCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEECCCCCCC
Confidence 3689999999999999999998 445889999999998776543
No 332
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=97.86 E-value=1.2e-05 Score=60.64 Aligned_cols=38 Identities=13% Similarity=0.261 Sum_probs=33.3
Q ss_pred CCCcccEEEEEECCHHHHHHHHH--ccCccCCcEEEEeec
Q 021295 6 TGQPRGFGFVTYADPSVVDKVIE--DTHIINGKQVEIKRT 43 (314)
Q Consensus 6 tg~~kG~aFV~f~~~~~a~~A~~--~~~~i~g~~i~v~~~ 43 (314)
++++||||||+|+++++|++|++ +...+.++.|.|+++
T Consensus 64 ~~~~~G~~fV~f~~~~~A~~A~~~lng~~~~Gr~i~v~~s 103 (104)
T 1jmt_A 64 GDHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQPIHAELS 103 (104)
T ss_dssp SSSSEEEEEEEESCHHHHHHHHHHHTTCEETTEECCEEEC
T ss_pred CCCccEEEEEEECCHHHHHHHHHHHCCCEECCEEEEEEEc
Confidence 57899999999999999999998 455889999988764
No 333
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.85 E-value=1.4e-05 Score=60.51 Aligned_cols=40 Identities=25% Similarity=0.664 Sum_probs=35.4
Q ss_pred CCcccEEEEEECCHHHHHHHHH--ccCccCCcEEEEeecCCC
Q 021295 7 GQPRGFGFVTYADPSVVDKVIE--DTHIINGKQVEIKRTIPK 46 (314)
Q Consensus 7 g~~kG~aFV~f~~~~~a~~A~~--~~~~i~g~~i~v~~~~~~ 46 (314)
..+|+||||+|++.++|++|++ +...|.++.|.|+++.++
T Consensus 66 ~~~kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~ 107 (109)
T 2err_A 66 RGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNATAR 107 (109)
T ss_dssp TBCTTEEEEECCCSHHHHHHHHHHTTCEETTEECEEEECCCS
T ss_pred CCCceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCCC
Confidence 3589999999999999999998 556899999999998765
No 334
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.83 E-value=2.3e-05 Score=57.35 Aligned_cols=42 Identities=26% Similarity=0.440 Sum_probs=36.3
Q ss_pred CcccEEEEEECCHHHHHHHHH--cc-CccCCcEEEEeecCCCCCC
Q 021295 8 QPRGFGFVTYADPSVVDKVIE--DT-HIINGKQVEIKRTIPKGAV 49 (314)
Q Consensus 8 ~~kG~aFV~f~~~~~a~~A~~--~~-~~i~g~~i~v~~~~~~~~~ 49 (314)
.+++||||+|++.++|++|++ +. ..|.++.|.|+++.++...
T Consensus 42 ~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~a~~~~~~ 86 (93)
T 2cqh_A 42 LKSGYAFVDYPDQNWAIRAIETLSGKVELHGKIMEVDYSVSKKLR 86 (93)
T ss_dssp EETTEEEECCSCHHHHHHHHHHHTTTCEETTEECEEEECCCCCCC
T ss_pred cCCCEEEEEECCHHHHHHHHHHccCCeeECCEEEEEEEccCcccc
Confidence 479999999999999999998 44 6799999999998876543
No 335
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.82 E-value=1.5e-05 Score=60.82 Aligned_cols=43 Identities=7% Similarity=0.113 Sum_probs=36.0
Q ss_pred CcccEEEEEECCHHHHHHHHHcc----CccCCcEEEEeecCCCCCCC
Q 021295 8 QPRGFGFVTYADPSVVDKVIEDT----HIINGKQVEIKRTIPKGAVG 50 (314)
Q Consensus 8 ~~kG~aFV~f~~~~~a~~A~~~~----~~i~g~~i~v~~~~~~~~~~ 50 (314)
++|+||||+|++.++|++|++.+ ..|.+++|.|.++..+....
T Consensus 60 ~~kg~aFVef~~~~~A~~Ai~~l~~~~~~l~Gr~l~V~~a~~~~~~~ 106 (112)
T 1x4f_A 60 RMKSQAFIEMETREDAMAMVDHCLKKALWFQGRCVKVDLSEKYKKLV 106 (112)
T ss_dssp TTTTEEEEECSSHHHHHHHHHHHHHSCCCSSSSCCEEEEECSCSSSS
T ss_pred cCCCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEECccccccc
Confidence 57899999999999999999833 35899999999987765443
No 336
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=97.81 E-value=1.8e-05 Score=74.82 Aligned_cols=47 Identities=21% Similarity=0.537 Sum_probs=41.5
Q ss_pred CCCCCCCCcccEEEEEECCHHHHHHHHH--ccCccCCcEEEEeecCCCC
Q 021295 1 MKDRKTGQPRGFGFVTYADPSVVDKVIE--DTHIINGKQVEIKRTIPKG 47 (314)
Q Consensus 1 m~d~~tg~~kG~aFV~f~~~~~a~~A~~--~~~~i~g~~i~v~~~~~~~ 47 (314)
|+|+.|++++|||||+|.+.++|++||+ +.+.|.++.|.|+++.++.
T Consensus 135 ~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~i~gr~i~V~~a~~~~ 183 (437)
T 3pgw_S 135 VYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVERGRT 183 (437)
T ss_pred eccCCCCCccceEEEeeccHHHHHHHHHHcCCCEECCEEEEEEEeCCCC
Confidence 4678899999999999999999999997 4568999999999987653
No 337
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=97.80 E-value=7.6e-06 Score=63.73 Aligned_cols=43 Identities=16% Similarity=0.210 Sum_probs=33.8
Q ss_pred CCCCCCCCcccEEEEEECC----HHH----HHHHHH----ccCccCCcEEEEeec
Q 021295 1 MKDRKTGQPRGFGFVTYAD----PSV----VDKVIE----DTHIINGKQVEIKRT 43 (314)
Q Consensus 1 m~d~~tg~~kG~aFV~f~~----~~~----a~~A~~----~~~~i~g~~i~v~~~ 43 (314)
|+|++|++|+|||||+|.+ +++ |.+|++ +...|++++|.|+..
T Consensus 39 i~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~lng~~I~Gr~irV~ln 93 (136)
T 2j8a_A 39 FNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESSGCFIMGFKFEVILN 93 (136)
T ss_dssp EECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTTTTCEEETTEEEEEEEC
T ss_pred EecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhcCCeecCcEEEEEEC
Confidence 5799999999999999996 332 677776 455889999998854
No 338
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=97.79 E-value=2.8e-05 Score=56.39 Aligned_cols=40 Identities=15% Similarity=0.232 Sum_probs=34.8
Q ss_pred CcccEEEEEECCHHHHHHHHH--ccCccCCcEEEEeecCCCC
Q 021295 8 QPRGFGFVTYADPSVVDKVIE--DTHIINGKQVEIKRTIPKG 47 (314)
Q Consensus 8 ~~kG~aFV~f~~~~~a~~A~~--~~~~i~g~~i~v~~~~~~~ 47 (314)
++||||||+|.++++|++|++ +...+.+++|.|+++....
T Consensus 38 ~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~~~~ 79 (88)
T 1wg1_A 38 RNKRTAFVTLLNGEQAQNAIQMFHQYSFRGKDLIVQLQPTDA 79 (88)
T ss_dssp GGGTEEEECCSCHHHHHHHHHHHTTEEETTEEEEEEECCCCC
T ss_pred CCCcEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEEcCCCc
Confidence 689999999999999999998 4458899999999886554
No 339
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=97.77 E-value=1.2e-05 Score=59.30 Aligned_cols=42 Identities=17% Similarity=0.249 Sum_probs=36.9
Q ss_pred CCCcccEEEEEECCHHHHHHHHH--ccCccCCcEEEEeecCCCC
Q 021295 6 TGQPRGFGFVTYADPSVVDKVIE--DTHIINGKQVEIKRTIPKG 47 (314)
Q Consensus 6 tg~~kG~aFV~f~~~~~a~~A~~--~~~~i~g~~i~v~~~~~~~ 47 (314)
|+++++||||+|.+.++|++|++ +...+.++.|.|+++.++.
T Consensus 47 ~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~ 90 (97)
T 1nu4_A 47 SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMRIQYAKTDS 90 (97)
T ss_dssp HHHHTTCEEEEESSHHHHHHHHHHHTTCEETTEECEEEECSSCC
T ss_pred CCCcCcEEEEEeCCHHHHHHHHHHhCCCEECCcEEEEEEccCCC
Confidence 56789999999999999999998 5568899999999987654
No 340
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=97.77 E-value=3.7e-05 Score=57.42 Aligned_cols=40 Identities=10% Similarity=0.148 Sum_probs=33.6
Q ss_pred CcccEEEEEECCHHHHHHHHHcc--C--ccCCcEEEEeecCCCC
Q 021295 8 QPRGFGFVTYADPSVVDKVIEDT--H--IINGKQVEIKRTIPKG 47 (314)
Q Consensus 8 ~~kG~aFV~f~~~~~a~~A~~~~--~--~i~g~~i~v~~~~~~~ 47 (314)
++|+||||+|++.++|++|++.+ . .|.+++|.|..+.+++
T Consensus 55 ~~kg~AFVef~~~~~A~~Av~~ln~~~~~i~Gr~i~V~~S~~k~ 98 (100)
T 3r27_A 55 PKKRQALVEFEDVLGACNAVNYAADNQIYIAGHPAFVNYSTSQK 98 (100)
T ss_dssp TTTTEEEEEESSHHHHHHHHHHHHHSCEEETTEEEEEEECSCSC
T ss_pred cCCCEEEEEECCHHHHHHHHHHhcCCCceeCCcEEEEEeccccc
Confidence 46899999999999999999833 2 3789999999987653
No 341
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.75 E-value=5e-05 Score=56.84 Aligned_cols=42 Identities=12% Similarity=0.110 Sum_probs=35.1
Q ss_pred cccEEEEEECCHHHHHHHHHc----cCccCCcEEEEeecCCCCCCC
Q 021295 9 PRGFGFVTYADPSVVDKVIED----THIINGKQVEIKRTIPKGAVG 50 (314)
Q Consensus 9 ~kG~aFV~f~~~~~a~~A~~~----~~~i~g~~i~v~~~~~~~~~~ 50 (314)
.|+||||+|++.++|++|++. ...|.+++|.|+++.++....
T Consensus 50 ~kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~~a~~~~~~~ 95 (101)
T 2cq1_A 50 GKNQAFLELATEEAAITMVNYYSAVTPHLRNQPIYIQYSNHKELKT 95 (101)
T ss_dssp TTTEEEEEESSHHHHHHHHHHHHHSCCEETTEECEEEECSCSSCCC
T ss_pred CCCEEEEEECCHHHHHHHHHHhccCCceECCcEEEEEEcCcccCcC
Confidence 489999999999999999983 246899999999988765443
No 342
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=97.75 E-value=3.9e-05 Score=57.87 Aligned_cols=38 Identities=16% Similarity=0.060 Sum_probs=33.4
Q ss_pred CCcccEEEEEECCHHHHHHHHH--ccCccCCcEEEEeecC
Q 021295 7 GQPRGFGFVTYADPSVVDKVIE--DTHIINGKQVEIKRTI 44 (314)
Q Consensus 7 g~~kG~aFV~f~~~~~a~~A~~--~~~~i~g~~i~v~~~~ 44 (314)
.+++|||||+|+++++|++|++ +...+.++.|.+....
T Consensus 56 ~~~~G~~fV~f~~~~~A~~Ai~~lnG~~f~GR~i~v~~~~ 95 (105)
T 3v4m_A 56 VPGCGKIFVEFTSVFDCQKAMQGLTGRKFANRVVVTKYCD 95 (105)
T ss_dssp CTTTTEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEEC
T ss_pred cCCcEEEEEEECCHHHHHHHHHHhCCCEeCCCEEEEEEeC
Confidence 5789999999999999999998 4458899999998754
No 343
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.74 E-value=1.6e-05 Score=58.94 Aligned_cols=42 Identities=19% Similarity=0.449 Sum_probs=35.9
Q ss_pred CcccEEEEEECCHHHHHHHHH--ccCccCCcEEEEeecCCCCCC
Q 021295 8 QPRGFGFVTYADPSVVDKVIE--DTHIINGKQVEIKRTIPKGAV 49 (314)
Q Consensus 8 ~~kG~aFV~f~~~~~a~~A~~--~~~~i~g~~i~v~~~~~~~~~ 49 (314)
++|+||||+|++.++|++|++ +...|.++.|.|+++.++...
T Consensus 49 ~~kg~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~~~~~ 92 (99)
T 2cpj_A 49 KDKGFGFIRLETRTLAEIAKVELDNMPLRGKQLRVRFACHSASL 92 (99)
T ss_dssp TTTTEEEEECSSSHHHHHHHHHHTTCCBTTBCCEEEESSCCSCC
T ss_pred cCCCEEEEEECCHHHHHHHHHHhCCCEeCCceEEEEEcCCCCCC
Confidence 468999999999999999997 455899999999998876443
No 344
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=97.73 E-value=2.1e-05 Score=60.93 Aligned_cols=41 Identities=20% Similarity=0.370 Sum_probs=36.1
Q ss_pred CcccEEEEEECCHHHHHHHHH--ccCccCCcEEEEeecCCCCC
Q 021295 8 QPRGFGFVTYADPSVVDKVIE--DTHIINGKQVEIKRTIPKGA 48 (314)
Q Consensus 8 ~~kG~aFV~f~~~~~a~~A~~--~~~~i~g~~i~v~~~~~~~~ 48 (314)
++|+||||+|++.++|++|++ +...|.++.|.|+++.++..
T Consensus 71 ~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~V~~a~~~~~ 113 (121)
T 2bz2_A 71 PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIARKQPM 113 (121)
T ss_dssp TTTTEEEEECSSHHHHHHHHHHHTTCBCSSCBCEEEECCSSCC
T ss_pred CCCCEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEeCCCCC
Confidence 689999999999999999997 55689999999999887644
No 345
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.73 E-value=4.3e-05 Score=55.49 Aligned_cols=40 Identities=18% Similarity=0.439 Sum_probs=34.8
Q ss_pred ccEEEEEECCHHHHHHHHH--ccCccCCcEEEEeecCCCCCC
Q 021295 10 RGFGFVTYADPSVVDKVIE--DTHIINGKQVEIKRTIPKGAV 49 (314)
Q Consensus 10 kG~aFV~f~~~~~a~~A~~--~~~~i~g~~i~v~~~~~~~~~ 49 (314)
|+||||+|.+.++|++|++ +...|.++.|.|+++.++...
T Consensus 42 ~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~~~ 83 (90)
T 2dnq_A 42 KNYGFVHIEDKTAAEDAIRNLHHYKLHGVNINVEASKNKSKA 83 (90)
T ss_dssp TTEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEECSSCCCCC
T ss_pred CCEEEEEECCHHHHHHHHHHhcCCccCCcEEEEEECCCCCCC
Confidence 7999999999999999997 445799999999998876543
No 346
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.72 E-value=4e-05 Score=57.49 Aligned_cols=42 Identities=12% Similarity=0.171 Sum_probs=34.7
Q ss_pred CcccEEEEEECCHHHHHHHHHcc----CccCCcEEEEeecCCCCCC
Q 021295 8 QPRGFGFVTYADPSVVDKVIEDT----HIINGKQVEIKRTIPKGAV 49 (314)
Q Consensus 8 ~~kG~aFV~f~~~~~a~~A~~~~----~~i~g~~i~v~~~~~~~~~ 49 (314)
+.|+||||+|++.++|++|++.+ .+|.+++|.|.++.++...
T Consensus 50 ~~kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~~a~~~~~~ 95 (102)
T 1x4d_A 50 NKINEAFIEMATTEDAQAAVDYYTTTPALVFGKPVRVHLSQKYKRI 95 (102)
T ss_dssp SSSSCEEEEESSHHHHHHHHHHHHHSCCEETTEECEEEEECCCTTS
T ss_pred cCCCEEEEEECCHHHHHHHHHHHcCCCceECCcEEEEEECCCCCCC
Confidence 35799999999999999999832 3589999999998865443
No 347
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.71 E-value=6.1e-05 Score=55.71 Aligned_cols=41 Identities=15% Similarity=0.444 Sum_probs=35.5
Q ss_pred CcccEEEEEECCHHHHHHHHH--ccCccCCcEEEEeecCCCCC
Q 021295 8 QPRGFGFVTYADPSVVDKVIE--DTHIINGKQVEIKRTIPKGA 48 (314)
Q Consensus 8 ~~kG~aFV~f~~~~~a~~A~~--~~~~i~g~~i~v~~~~~~~~ 48 (314)
.+|+||||+|.+.++|++|++ +...|.++.|.|+++.++..
T Consensus 49 ~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~~ 91 (99)
T 2cpd_A 49 KIRDYAFVHFSNREDAVEAMKALNGKVLDGSPIEVTLAKPVDK 91 (99)
T ss_dssp ECSSEEEEEESSHHHHHHHHHHHSSEEETTEEEEEECCCCCCC
T ss_pred EeCCeEEEEeCCHHHHHHHHHHhCCCEeCCcEEEEEECCCCCC
Confidence 458999999999999999998 45588999999999887654
No 348
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.70 E-value=6.8e-05 Score=56.41 Aligned_cols=41 Identities=12% Similarity=0.139 Sum_probs=34.5
Q ss_pred cccEEEEEECCHHHHHHHHHcc----CccCCcEEEEeecCCCCCC
Q 021295 9 PRGFGFVTYADPSVVDKVIEDT----HIINGKQVEIKRTIPKGAV 49 (314)
Q Consensus 9 ~kG~aFV~f~~~~~a~~A~~~~----~~i~g~~i~v~~~~~~~~~ 49 (314)
.|+||||+|++.++|++|++.+ ..|.+++|.|+++.++...
T Consensus 50 ~kg~aFVef~~~~~A~~Ai~~l~~~~~~i~Gr~l~V~~a~~~~~~ 94 (104)
T 1wex_A 50 FKRQALVEFENIDSAKECVTFAADVPVYIAGQQAFFNYSTSKRIT 94 (104)
T ss_dssp TTTEEEEEESSHHHHHHHHHHHHHSCCBSSSSBCEEEECSSSSCC
T ss_pred CCCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEEccCcccc
Confidence 4899999999999999999832 3589999999998776543
No 349
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=97.69 E-value=6.3e-05 Score=56.12 Aligned_cols=42 Identities=17% Similarity=0.358 Sum_probs=35.8
Q ss_pred cccEEEEEECCHHHHHHHHH--ccCccCCcEEEEeecCCCCCCC
Q 021295 9 PRGFGFVTYADPSVVDKVIE--DTHIINGKQVEIKRTIPKGAVG 50 (314)
Q Consensus 9 ~kG~aFV~f~~~~~a~~A~~--~~~~i~g~~i~v~~~~~~~~~~ 50 (314)
.|+||||+|.+.++|++||+ +.+.|.++.|.|+++.++....
T Consensus 44 ~~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~~~ 87 (103)
T 2dgu_A 44 LKDYAFIHFDERDGAVKAMEEMNGKDLEGENIEIVFAKPPDQKR 87 (103)
T ss_dssp CSSCEEEEESSHHHHHHHHHHHTTEEETTEEEEEEECCCCCCCC
T ss_pred ECCEEEEEeCCHHHHHHHHHHHCCCccCCCEEEEEEcCCCcccc
Confidence 47799999999999999998 4558999999999988765544
No 350
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.69 E-value=3.8e-05 Score=59.28 Aligned_cols=42 Identities=10% Similarity=0.190 Sum_probs=35.7
Q ss_pred cccEEEEEECCHHHHHHHHHcc----CccCCcEEEEeecCCCCCCC
Q 021295 9 PRGFGFVTYADPSVVDKVIEDT----HIINGKQVEIKRTIPKGAVG 50 (314)
Q Consensus 9 ~kG~aFV~f~~~~~a~~A~~~~----~~i~g~~i~v~~~~~~~~~~ 50 (314)
.|+||||+|++.++|++|++.+ ..|.+++|.|+++.++....
T Consensus 66 ~kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~Gr~l~V~~a~~k~~~~ 111 (119)
T 2ad9_A 66 GKNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQFSNHKELKT 111 (119)
T ss_dssp GGTEEEEECSCHHHHHHHHHHHHHHCCCBTTBCCEEEECSSSSCCC
T ss_pred CCCEEEEEECCHHHHHHHHHHhccCCceECCeEEEEEEccCCCCCc
Confidence 4899999999999999999833 46999999999988765544
No 351
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=97.68 E-value=0.00017 Score=55.10 Aligned_cols=75 Identities=16% Similarity=0.257 Sum_probs=59.9
Q ss_pred CCCCcceEEEcCCCCCCCHHHHHHHHhccCCeEEEEEeecCCCCCcceEEEEEeCChHHHHHHHHhcCCeeeCC-eEEEE
Q 021295 52 KDFKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAG-AQVEV 130 (314)
Q Consensus 52 ~~~~~~~l~V~nLp~~~~e~~l~~~F~~~G~v~~v~i~~~~~~g~~rG~afV~F~~~~~a~~a~~~l~~~~~~g-r~l~V 130 (314)
+....+.|.|-.+|.+. ...|.++|++||+|+++.... ..-...|.|+++.+|++||.+ |+..|.+ ..|-|
T Consensus 20 ~~~~~~wVtVFGFp~~~-~~~VL~~F~~~G~Iv~~~~~~------~~NWihI~Y~s~~~A~rAL~k-NG~ii~g~~mIGV 91 (119)
T 1wwh_A 20 DHLDDTWVTVFGFPQAS-ASYILLQFAQYGNILKHVMSN------TGNWMHIRYQSKLQARKALSK-DGRIFGESIMIGV 91 (119)
T ss_dssp -CGGGGEEEEECCCGGG-HHHHHHHHHTTSCEEEEEECS------SSSEEEEEESSHHHHHHHHTT-TTCEETTTEECEE
T ss_pred CCCCCCEEEEECCCHHH-HHHHHHHHHhhCcEEEeccCC------CCCeEEEEeCCHHHHHHHHHh-CCeEecCCEEEEE
Confidence 44567889999999885 577889999999999888732 234899999999999999999 8888875 66677
Q ss_pred eecC
Q 021295 131 KKAE 134 (314)
Q Consensus 131 ~~a~ 134 (314)
+++.
T Consensus 92 ~p~~ 95 (119)
T 1wwh_A 92 KPCI 95 (119)
T ss_dssp EECC
T ss_pred EECC
Confidence 6654
No 352
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=97.67 E-value=1.5e-05 Score=59.24 Aligned_cols=38 Identities=13% Similarity=0.227 Sum_probs=33.4
Q ss_pred CcccEEEEEECCHHHHHHHHH--ccCccCCcEEEEeecCC
Q 021295 8 QPRGFGFVTYADPSVVDKVIE--DTHIINGKQVEIKRTIP 45 (314)
Q Consensus 8 ~~kG~aFV~f~~~~~a~~A~~--~~~~i~g~~i~v~~~~~ 45 (314)
++|+||||+|.+.++|++|++ +...|.++.|.|+++.+
T Consensus 61 ~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 100 (101)
T 2la4_A 61 PEKGCCFIKYDTHEQAAVCIVALANFPFQGRNLRTGWGKE 100 (101)
T ss_dssp TTTTEEEEECSSHHHHHHHHHHHTTCEETTEECCCCBCCC
T ss_pred cCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEeccC
Confidence 679999999999999999997 55688999999988765
No 353
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.63 E-value=8.9e-05 Score=55.90 Aligned_cols=40 Identities=18% Similarity=0.323 Sum_probs=35.2
Q ss_pred ccEEEEEECCHHHHHHHHH--ccCccCCcEEEEeecCCCCCC
Q 021295 10 RGFGFVTYADPSVVDKVIE--DTHIINGKQVEIKRTIPKGAV 49 (314)
Q Consensus 10 kG~aFV~f~~~~~a~~A~~--~~~~i~g~~i~v~~~~~~~~~ 49 (314)
|+||||+|.+.++|++|++ +...|.++.|.|+++.++...
T Consensus 61 ~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~~ 102 (109)
T 1x4g_A 61 KGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYWGKESPDM 102 (109)
T ss_dssp TTEEEEEESSHHHHHHHHHHHTTCEETTEECEEECCCCCCSS
T ss_pred CCEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEecCCCCCC
Confidence 8999999999999999997 556899999999998876544
No 354
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=97.62 E-value=0.00014 Score=53.19 Aligned_cols=54 Identities=19% Similarity=0.394 Sum_probs=44.3
Q ss_pred cceEEEcCCCCCCCHHHHHHHHhccCCeEEEEEeecCCCCCcceEEEEEeCChHHHHHHHHhc
Q 021295 56 TKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKG 118 (314)
Q Consensus 56 ~~~l~V~nLp~~~~e~~l~~~F~~~G~v~~v~i~~~~~~g~~rG~afV~F~~~~~a~~a~~~l 118 (314)
.+.++| .+|.++...||.++|+.|+.|. |+.+.| | .|||.|.+++.|..|+..+
T Consensus 16 ~HVf~l-~FP~ewKt~DI~~lFs~fggv~-I~WidD--T-----sAlvvf~~~~~a~~al~~i 69 (100)
T 1whv_A 16 DHVLHV-TFPKEWKTSDLYQLFSAFGNIQ-ISWIDD--T-----SAFVSLSQPEQVQIAVNTS 69 (100)
T ss_dssp CSEEEE-ECCTTCCHHHHHHHHTTTCSCC-CEEEET--T-----EEEEECSCHHHHHHHHHHH
T ss_pred CeEEEE-eCChhhhhHHHHHHhhccCCEE-EEEEcC--C-----eEEEEecCHHHHHHHHHhc
Confidence 345555 9999999999999999999554 555555 3 7999999999999999865
No 355
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=97.62 E-value=2.3e-05 Score=56.42 Aligned_cols=36 Identities=22% Similarity=0.532 Sum_probs=30.5
Q ss_pred CCcccEEEEEECCHHHHHHHHH-ccCccCCcEEEEee
Q 021295 7 GQPRGFGFVTYADPSVVDKVIE-DTHIINGKQVEIKR 42 (314)
Q Consensus 7 g~~kG~aFV~f~~~~~a~~A~~-~~~~i~g~~i~v~~ 42 (314)
.++|+||||+|.+.++|++|+. +...+.++.|.|++
T Consensus 50 ~~~kg~afV~f~~~~~a~~A~~l~g~~~~g~~l~V~r 86 (87)
T 2hzc_A 50 NQDKNFAFLEFRSVDETTQAMAFDGIIFQGQSLKIRR 86 (87)
T ss_dssp CSSSSEEEEEESSHHHHHHHGGGTTCEETTEECEEEC
T ss_pred cCCCcEEEEEcCCHHHHHHHHhcCCCEECCeEEEEeC
Confidence 3569999999999999999995 44578899988875
No 356
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.61 E-value=6.6e-05 Score=55.30 Aligned_cols=38 Identities=5% Similarity=0.214 Sum_probs=33.6
Q ss_pred ccEEEEEECCHHHHHHHHH--ccCccC--CcEEEEeecCCCC
Q 021295 10 RGFGFVTYADPSVVDKVIE--DTHIIN--GKQVEIKRTIPKG 47 (314)
Q Consensus 10 kG~aFV~f~~~~~a~~A~~--~~~~i~--g~~i~v~~~~~~~ 47 (314)
|+||||+|++.++|++|++ +...|. ++.|.|+++.++.
T Consensus 53 ~g~afV~f~~~~~A~~A~~~l~g~~~~~~g~~l~V~~a~~~~ 94 (97)
T 1why_A 53 DSFAYIQYESLDAAQAACAKMRGFPLGGPDRRLRVDFAKSGP 94 (97)
T ss_dssp SCCEEEEESSHHHHHHHHHHHTTCBCSSSSCBCEEEECCCCC
T ss_pred CCEEEEEECCHHHHHHHHHHHCCCEeCCCCcEEEEEECCCCC
Confidence 8999999999999999998 455788 8999999988764
No 357
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=97.60 E-value=4.6e-05 Score=55.47 Aligned_cols=40 Identities=38% Similarity=0.562 Sum_probs=31.4
Q ss_pred CcccEEEEEECCHHHHHHHHHccCccCCcEEEEeecCCCC
Q 021295 8 QPRGFGFVTYADPSVVDKVIEDTHIINGKQVEIKRTIPKG 47 (314)
Q Consensus 8 ~~kG~aFV~f~~~~~a~~A~~~~~~i~g~~i~v~~~~~~~ 47 (314)
.+||||||+|+++++|+++......+.++.|.|+++.++.
T Consensus 46 ~srGfaFV~F~~~~~A~~~~~~~~~~~g~~v~v~~a~~k~ 85 (89)
T 3d2w_A 46 PFRAFAFVTFADDKVAQSLCGEDLIIKGISVHISNAEPKH 85 (89)
T ss_dssp SCCSEEEEEESCHHHHHHHTTCEEEETTEEEEEEECC---
T ss_pred CCCCEEEEEECCHHHHHHHcCCCcccCCEEEEEEEcCCCC
Confidence 3899999999999999976555556779999999987764
No 358
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.57 E-value=0.00012 Score=53.38 Aligned_cols=41 Identities=15% Similarity=0.307 Sum_probs=35.1
Q ss_pred ccEEEEEECCHHHHHHHHH--ccCccCCcEEEEeecCCCCCCC
Q 021295 10 RGFGFVTYADPSVVDKVIE--DTHIINGKQVEIKRTIPKGAVG 50 (314)
Q Consensus 10 kG~aFV~f~~~~~a~~A~~--~~~~i~g~~i~v~~~~~~~~~~ 50 (314)
++||||+|++.++|++|++ +.+.|.++.|.|+++.++....
T Consensus 44 ~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~~~~ 86 (92)
T 2dgt_A 44 KDYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLSTSRLRTA 86 (92)
T ss_dssp SSEEEEEESCHHHHHHHHHHHTTEEETTEEEEEEESSCCCSCC
T ss_pred CCEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEccCCCCCC
Confidence 5699999999999999998 5568999999999998765543
No 359
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=97.56 E-value=0.00026 Score=52.06 Aligned_cols=72 Identities=4% Similarity=0.121 Sum_probs=52.6
Q ss_pred CCcceEEEcCCCCCCCHHHHHHHHhccCCeEEEEEeecCCCCC--cceEEEEEeCChHHHHHHHHhcCCeeeCC
Q 021295 54 FKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSR--SRGFGFITFDTEQAVDDLLAKGNKLELAG 125 (314)
Q Consensus 54 ~~~~~l~V~nLp~~~~e~~l~~~F~~~G~v~~v~i~~~~~~g~--~rG~afV~F~~~~~a~~a~~~l~~~~~~g 125 (314)
..+-+|.|+.||+.+||+++.+.+...-++.....+.-..+-+ .-.-|+|.|++.+++....+..++..+.+
T Consensus 7 ~~~~KvVIRrLPP~Ltee~F~~~l~~~~~~d~~~fv~G~~s~~~~~~SRAYI~F~~~edv~~F~~~f~g~~F~D 80 (97)
T 2l08_A 7 HHSHMVVIRRLPPGLTKEQLEEQLRPLPAHDYFEFFAADLSLYPHLYSRAYINFRNPDDILLFRDRFDGYIFLD 80 (97)
T ss_dssp CCCCCEEEECCCSCSCHHHHTTTTSCCSSEEECCCCCCCSSSCCSCCCCCEEEESCHHHHHHHHHHSTTEEEEC
T ss_pred ccceeEEEeCCCCCCCHHHHHHHhCCcCccceEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHcCCcEEEe
Confidence 3567899999999999999999888765543333322222211 12358999999999999999999988754
No 360
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=97.56 E-value=9.8e-05 Score=54.59 Aligned_cols=38 Identities=24% Similarity=0.525 Sum_probs=33.0
Q ss_pred cccEEEEEECCHHHHHHHHH--ccCccCCcEEEEeecCCC
Q 021295 9 PRGFGFVTYADPSVVDKVIE--DTHIINGKQVEIKRTIPK 46 (314)
Q Consensus 9 ~kG~aFV~f~~~~~a~~A~~--~~~~i~g~~i~v~~~~~~ 46 (314)
+|+||||+|.+.++|++|++ +...+.++.|.|+++.++
T Consensus 56 ~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~ 95 (97)
T 2xnq_A 56 KNAFGFIQFDNPQSVRDAIEXESQEMNFGKKLILEVSSSN 95 (97)
T ss_dssp CSSEEEEEESSHHHHHHHHHHHTTSEETTEECEEEECCCC
T ss_pred eCCEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEecCCC
Confidence 48999999999999999998 445788999999987654
No 361
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=97.55 E-value=6.7e-05 Score=56.68 Aligned_cols=40 Identities=15% Similarity=0.414 Sum_probs=34.6
Q ss_pred cccEEEEEECCHHHHHHHHH--ccCccCCcEEEEeecCCCCC
Q 021295 9 PRGFGFVTYADPSVVDKVIE--DTHIINGKQVEIKRTIPKGA 48 (314)
Q Consensus 9 ~kG~aFV~f~~~~~a~~A~~--~~~~i~g~~i~v~~~~~~~~ 48 (314)
+|+||||+|++.++|++|++ +...|.++.|.|+++.+...
T Consensus 61 ~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~~~~ 102 (110)
T 1wf1_A 61 HKGYAFVQYSNERHARAAVLGENGRVLAGQTLDINMAGEPKP 102 (110)
T ss_dssp ETTEEEEECSSSHHHHHHHHHHTTCEETTEECCEEESCCCCS
T ss_pred eCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECCCCCC
Confidence 68999999999999999997 55689999999999875433
No 362
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.54 E-value=4e-05 Score=55.43 Aligned_cols=42 Identities=33% Similarity=0.524 Sum_probs=35.5
Q ss_pred CcccEEEEEECCHHHHHHHHHccCccCCcEEEEeecCCCCCC
Q 021295 8 QPRGFGFVTYADPSVVDKVIEDTHIINGKQVEIKRTIPKGAV 49 (314)
Q Consensus 8 ~~kG~aFV~f~~~~~a~~A~~~~~~i~g~~i~v~~~~~~~~~ 49 (314)
.+|+||||+|++.++|++|+.....+.+++|.|.++.++...
T Consensus 40 ~~~g~afV~f~~~~~a~~~~~~~~~~~g~~l~v~~a~~~~~~ 81 (88)
T 1wf0_A 40 PFRAFAFVTFADDQIAQSLCGEDLIIKGISVHISNAEPKHNS 81 (88)
T ss_dssp SCCSCCEEECSCHHHHHHTTTCEEEETTEEEEEECCCCCCCC
T ss_pred CCCCEEEEEECCHHHHHHHhcCCceeCCEEEEEEecCCCCCC
Confidence 379999999999999998877666779999999988876544
No 363
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=97.54 E-value=6.2e-05 Score=55.41 Aligned_cols=41 Identities=22% Similarity=0.472 Sum_probs=34.5
Q ss_pred cccEEEEEECCHHHHHHHHH--ccCccCCcEEEEeecCCCCCC
Q 021295 9 PRGFGFVTYADPSVVDKVIE--DTHIINGKQVEIKRTIPKGAV 49 (314)
Q Consensus 9 ~kG~aFV~f~~~~~a~~A~~--~~~~i~g~~i~v~~~~~~~~~ 49 (314)
+|+||||+|.+.++|++|++ +...+.++.|.|+++.++...
T Consensus 44 ~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~~~~~ 86 (96)
T 2kvi_A 44 KNAFGFIQFDNPQSVRDAIECESQEMNFGKKLILEVSSSNARP 86 (96)
T ss_dssp ETTEEEEEESCHHHHHHHHHHHTCSSCBTTTBCEEEEECCCC-
T ss_pred eCCEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEEcCcCCCC
Confidence 58999999999999999998 445888999999998765443
No 364
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.52 E-value=0.00011 Score=53.82 Aligned_cols=35 Identities=9% Similarity=0.115 Sum_probs=31.5
Q ss_pred EEEEECCHHHHHHHHH--ccCccCCcEEEEeecCCCC
Q 021295 13 GFVTYADPSVVDKVIE--DTHIINGKQVEIKRTIPKG 47 (314)
Q Consensus 13 aFV~f~~~~~a~~A~~--~~~~i~g~~i~v~~~~~~~ 47 (314)
|||+|.+.++|++|++ +...|.++.|.|+++.+++
T Consensus 57 afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~~~~ 93 (96)
T 2e44_A 57 VNVTYSSKDQARQALDKLNGFQLENFTLKVAYIPDEM 93 (96)
T ss_dssp EEEEESSHHHHHHHHHHHTTCBCSSCBCEEEECCCCC
T ss_pred EEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcCccc
Confidence 9999999999999998 5568999999999988774
No 365
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=97.51 E-value=0.00016 Score=58.82 Aligned_cols=42 Identities=14% Similarity=0.095 Sum_probs=34.7
Q ss_pred CCcccEEEEEECCHHHHHHHHHcc--CccCC--cEEEEeecCCCCC
Q 021295 7 GQPRGFGFVTYADPSVVDKVIEDT--HIING--KQVEIKRTIPKGA 48 (314)
Q Consensus 7 g~~kG~aFV~f~~~~~a~~A~~~~--~~i~g--~~i~v~~~~~~~~ 48 (314)
.++++||||+|++.++|++|++.+ ..|.+ +.|+|+++.++..
T Consensus 81 k~~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g~g~~L~V~~Ak~~~l 126 (164)
T 1sjr_A 81 KNNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFSKLTSL 126 (164)
T ss_dssp SSSCEEEEEEESCHHHHHHHHHHSTTBCSSSSCSCEEEEECSSSSC
T ss_pred CCCCCEEEEEECCHHHHHHHHHHhCCCEecCCCcEEEEEEecCCcc
Confidence 347899999999999999999944 47754 8999999887653
No 366
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.49 E-value=0.00014 Score=54.75 Aligned_cols=40 Identities=13% Similarity=0.208 Sum_probs=34.0
Q ss_pred cEEEEEECCHHHHHHHHHcc--CccCC-----cEEEEeecCCCCCCC
Q 021295 11 GFGFVTYADPSVVDKVIEDT--HIING-----KQVEIKRTIPKGAVG 50 (314)
Q Consensus 11 G~aFV~f~~~~~a~~A~~~~--~~i~g-----~~i~v~~~~~~~~~~ 50 (314)
+||||+|++.++|++||+.+ .+|.+ +.|.|+++.++....
T Consensus 51 g~afV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~~i~V~~a~~~~~~~ 97 (108)
T 1x4c_A 51 GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIRVKVDGPRSPSY 97 (108)
T ss_dssp TEEEEEESSHHHHHHHHHHSSSEEEECTTSCEEEEEEEESSCCSCCC
T ss_pred CEEEEEECCHHHHHHHHHHHCcCCccCCcCcceEEEEEeCCCCCCCC
Confidence 89999999999999999944 47788 999999988765543
No 367
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.49 E-value=0.00016 Score=52.36 Aligned_cols=39 Identities=13% Similarity=0.334 Sum_probs=34.0
Q ss_pred ccEEEEEECCHHHHHHHHH--ccCccCCcEEEEeecCCCCC
Q 021295 10 RGFGFVTYADPSVVDKVIE--DTHIINGKQVEIKRTIPKGA 48 (314)
Q Consensus 10 kG~aFV~f~~~~~a~~A~~--~~~~i~g~~i~v~~~~~~~~ 48 (314)
++||||+|.+.++|++|++ +...|.++.|.|+++.+...
T Consensus 43 ~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~ 83 (90)
T 2dnp_A 43 KDYAFVHMEKEADAKAAIAQLNGKEVKGKRINVELSTKGQK 83 (90)
T ss_dssp SSCEEEEESCHHHHHHHHHHHTTCEETTEECEEEESCCCCC
T ss_pred CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEECCCCCC
Confidence 5699999999999999998 55689999999999877643
No 368
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.48 E-value=0.00015 Score=55.07 Aligned_cols=39 Identities=8% Similarity=0.020 Sum_probs=34.1
Q ss_pred CcccEEEEEECCHHHHHHHHH--ccCccCCcEEEEeecCCC
Q 021295 8 QPRGFGFVTYADPSVVDKVIE--DTHIINGKQVEIKRTIPK 46 (314)
Q Consensus 8 ~~kG~aFV~f~~~~~a~~A~~--~~~~i~g~~i~v~~~~~~ 46 (314)
++|+||||+|.+.++|++|++ +...|.++.|.|+++...
T Consensus 44 ~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~ 84 (111)
T 1whx_A 44 EGGITAIVEFLEPLEARKAFRHLAYSKFHHVPLYLEWAPIG 84 (111)
T ss_dssp SSSSCEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEEEETT
T ss_pred CCCCEEEEEeCCHHHHHHHHHHhCCCEECCeEEEEEECCCC
Confidence 478999999999999999998 455889999999997654
No 369
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.48 E-value=0.00017 Score=52.89 Aligned_cols=40 Identities=5% Similarity=0.144 Sum_probs=34.7
Q ss_pred cEEEEEECCHHHHHHHHH--ccCccCCcEEEEeecCCCCCCC
Q 021295 11 GFGFVTYADPSVVDKVIE--DTHIINGKQVEIKRTIPKGAVG 50 (314)
Q Consensus 11 G~aFV~f~~~~~a~~A~~--~~~~i~g~~i~v~~~~~~~~~~ 50 (314)
|+|||+|.+.++|++|++ +..++.+++|+|..+..+.+..
T Consensus 47 G~AfV~F~~~esA~~A~~~l~G~~l~gr~i~v~~A~~~sd~~ 88 (96)
T 2diu_A 47 CSAILRFINQDSAERAQKRMENEDVFGNRIIVSFTPKNRELC 88 (96)
T ss_dssp TCEEEEESSHHHHHHHHHHHTTCCSSSSCCEEESSCCSCCCC
T ss_pred CEEEEEECCHHHHHHHHHHhcCCccCCceEEEEecCCCccee
Confidence 999999999999999998 5568999999999987765543
No 370
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.45 E-value=0.00011 Score=52.46 Aligned_cols=36 Identities=22% Similarity=0.474 Sum_probs=31.1
Q ss_pred CcccEEEEEECCHHHHHHHHHcc---CccCCcEEEEeec
Q 021295 8 QPRGFGFVTYADPSVVDKVIEDT---HIINGKQVEIKRT 43 (314)
Q Consensus 8 ~~kG~aFV~f~~~~~a~~A~~~~---~~i~g~~i~v~~~ 43 (314)
++|+||||+|++.++|++|++.+ ..+.++.|.|+++
T Consensus 46 ~~kg~afV~f~~~~~A~~a~~~l~~~~~~~g~~l~v~~a 84 (85)
T 2ytc_A 46 QRQQCAFIQFATRQAAEVAAEKSFNKLIVNGRRLNVKWG 84 (85)
T ss_dssp GGGTEEEEEESSHHHHHHHHHTTTTTCEETTEECCEEEC
T ss_pred CCCCEEEEEECCHHHHHHHHHHhcCCeeECCCEEEEEec
Confidence 36899999999999999999844 5788999988875
No 371
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=97.44 E-value=0.00012 Score=55.22 Aligned_cols=38 Identities=21% Similarity=0.398 Sum_probs=33.8
Q ss_pred ccEEEEEECCHHHHHHHHH--ccCccCCcEEEEeecCCCC
Q 021295 10 RGFGFVTYADPSVVDKVIE--DTHIINGKQVEIKRTIPKG 47 (314)
Q Consensus 10 kG~aFV~f~~~~~a~~A~~--~~~~i~g~~i~v~~~~~~~ 47 (314)
|+||||+|.+.++|++|++ +...|.++.|.|+++.++.
T Consensus 65 kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~~ 104 (108)
T 2jvo_A 65 NGFAFVEFEEAESAAKAIEEVHGKSFANQPLEVVYSKLPA 104 (108)
T ss_dssp TTEEEEECSSHHHHHHHHHHHTTCEETTEECEEESCSCCC
T ss_pred CCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEecCCC
Confidence 8999999999999999998 5568899999999987654
No 372
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=97.41 E-value=0.00014 Score=56.06 Aligned_cols=39 Identities=18% Similarity=0.125 Sum_probs=34.1
Q ss_pred CCCcccEEEEEECCHHHHHHHHH--ccCccCCcEEEEeecC
Q 021295 6 TGQPRGFGFVTYADPSVVDKVIE--DTHIINGKQVEIKRTI 44 (314)
Q Consensus 6 tg~~kG~aFV~f~~~~~a~~A~~--~~~~i~g~~i~v~~~~ 44 (314)
|++++||+||+|+++++|++|++ +...+.++.|.+....
T Consensus 67 ~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f~GR~i~v~~~~ 107 (118)
T 3ue2_A 67 DAEIIVKIFVEFSIASETHKAIQALNGRWFAGRKVVAEVYD 107 (118)
T ss_dssp TCEEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEEC
T ss_pred CCcceEEEEEEECCHHHHHHHHHHHCCCEECCcEEEEEEcC
Confidence 57889999999999999999999 4458899999998754
No 373
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=97.36 E-value=0.0003 Score=51.66 Aligned_cols=54 Identities=17% Similarity=0.390 Sum_probs=44.2
Q ss_pred ceEEEcCCCCCCCHHHHHHHHhccCCeEEEEEeecCCCCCcceEEEEEeCChHHHHHHHHhcC
Q 021295 57 KKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGN 119 (314)
Q Consensus 57 ~~l~V~nLp~~~~e~~l~~~F~~~G~v~~v~i~~~~~~g~~rG~afV~F~~~~~a~~a~~~l~ 119 (314)
..++| .+|.++...||.++|+.||.| .|..+.| | .|||.|.+++.|..|+..+.
T Consensus 7 HV~~l-~FP~ewKt~Di~~lFs~fggv-~I~WidD--T-----sAlvvf~~~~~a~~al~~i~ 60 (101)
T 3ctr_A 7 HVLHV-TFPKEWKTSDLYQLFSAFGNI-QISWIDD--T-----SAFVSLSQPEQVKIAVNTSK 60 (101)
T ss_dssp EEEEE-ECCTTCCHHHHHHHTTTSEEE-EEEEEET--T-----EEEEEEEEECHHHHHHHHHT
T ss_pred eEEEE-eCChhhhhHHHHHHHhccCCE-EEEEEcC--C-----eEEEEecCHHHHHHHHHhcc
Confidence 34455 999999999999999999844 4555555 3 79999999999999999764
No 374
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=97.34 E-value=0.00026 Score=55.36 Aligned_cols=40 Identities=20% Similarity=0.244 Sum_probs=33.1
Q ss_pred cccE-EEEEECCHHHHHHHHH--ccCccCC--cEEEEeecCCCCC
Q 021295 9 PRGF-GFVTYADPSVVDKVIE--DTHIING--KQVEIKRTIPKGA 48 (314)
Q Consensus 9 ~kG~-aFV~f~~~~~a~~A~~--~~~~i~g--~~i~v~~~~~~~~ 48 (314)
+|+| |||+|+++++|++|++ +...|.+ +.|+|+++.++..
T Consensus 64 ~~gfqAFVef~~~~~A~~Ai~~LnG~~i~g~~~~LrI~~ak~~~l 108 (130)
T 3zzy_A 64 NNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFSKLTSL 108 (130)
T ss_dssp TTEEEEEEEESCHHHHHHHHHHHTTCEEETTEEEEEEEECSCSSC
T ss_pred CCCcEEEEEECCHHHHHHHHHHcCCCeecCCCcEEEEEecCCCce
Confidence 4788 9999999999999999 4457776 8899998877644
No 375
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.31 E-value=0.00026 Score=54.09 Aligned_cols=37 Identities=5% Similarity=0.109 Sum_probs=27.1
Q ss_pred cccEEEEEECCHHHHHHHHHccC--cc-----CCcEEEEeecCC
Q 021295 9 PRGFGFVTYADPSVVDKVIEDTH--II-----NGKQVEIKRTIP 45 (314)
Q Consensus 9 ~kG~aFV~f~~~~~a~~A~~~~~--~i-----~g~~i~v~~~~~ 45 (314)
.|+||||+|++.++|++|++.++ +| .++.|.|..+..
T Consensus 62 ~rgfaFV~f~~~~~A~~Ai~~lnG~~~~~~lg~g~~l~v~~a~~ 105 (114)
T 2cq2_A 62 NKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKITLYLNFVEK 105 (114)
T ss_dssp TCSCEEEEESSHHHHHHHHHHTTTCEEECTTSCEEECEEEEESC
T ss_pred CCCEEEEEECCHHHHHHHHHHhCCCEEccccCCCcEEEEEeccc
Confidence 58999999999999999999533 33 345555555443
No 376
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=97.15 E-value=0.00049 Score=52.40 Aligned_cols=36 Identities=17% Similarity=0.367 Sum_probs=28.5
Q ss_pred cEEEEEECCHHHHHHHHH--ccCccCCcE-----EEEeecCCC
Q 021295 11 GFGFVTYADPSVVDKVIE--DTHIINGKQ-----VEIKRTIPK 46 (314)
Q Consensus 11 G~aFV~f~~~~~a~~A~~--~~~~i~g~~-----i~v~~~~~~ 46 (314)
+||||+|++.++|++||+ +..+|+++. |+|+.+.+.
T Consensus 52 g~afV~f~~~~~a~~Ai~~l~g~~~~gr~~~~~~i~v~~~~~~ 94 (115)
T 3beg_B 52 GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIRVKVDGPR 94 (115)
T ss_dssp SEEEEEESSHHHHHHHHHHHTTCBCCCTTSCCCBCEEEECC--
T ss_pred CEEEEEECCHHHHHHHHHHhCCCEECCcEeeeEEEEeccCCCC
Confidence 999999999999999998 445788887 666665544
No 377
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=96.94 E-value=0.00066 Score=51.82 Aligned_cols=36 Identities=11% Similarity=0.136 Sum_probs=31.6
Q ss_pred cccEEEEEECCHHHHHHHHH--ccCccCCcEEEEeecC
Q 021295 9 PRGFGFVTYADPSVVDKVIE--DTHIINGKQVEIKRTI 44 (314)
Q Consensus 9 ~kG~aFV~f~~~~~a~~A~~--~~~~i~g~~i~v~~~~ 44 (314)
++||+||+|++.++|++|++ +...+.++.|.+..+.
T Consensus 54 ~~G~~fV~f~~~e~A~~Ai~~lnG~~f~GR~i~v~~~~ 91 (114)
T 3s6e_A 54 AQGNVYVKCPSIAAAIAAVNALHGRWFAGKMITAAYVP 91 (114)
T ss_dssp TTCCEEEECSSHHHHHHHHHHHTTCEETTEECEEEEEC
T ss_pred CcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEEc
Confidence 69999999999999999998 4458899999998753
No 378
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=96.91 E-value=0.002 Score=49.94 Aligned_cols=37 Identities=16% Similarity=0.227 Sum_probs=30.7
Q ss_pred cE-EEEEECCHHHHHHHHH--ccCccCC--cEEEEeecCCCC
Q 021295 11 GF-GFVTYADPSVVDKVIE--DTHIING--KQVEIKRTIPKG 47 (314)
Q Consensus 11 G~-aFV~f~~~~~a~~A~~--~~~~i~g--~~i~v~~~~~~~ 47 (314)
|| |||+|++.++|++|++ +..+|.+ +.|.|+++.++.
T Consensus 62 Gf~aFVef~~~~~A~~A~~~LnG~~i~g~~~~l~V~~Ak~~~ 103 (124)
T 2e5i_A 62 GIQAMVEFESVLCAQKAKAALNGADIYAGCCTLKIEYARPTR 103 (124)
T ss_dssp SEEEEEEESSHHHHHHHHHHHTTCCCBTTBSEEEEECCSCSC
T ss_pred CCEEEEEECCHHHHHHHHHHhCCCEecCCCeEEEEEEecCCc
Confidence 86 9999999999999999 4457766 588998887664
No 379
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=96.78 E-value=0.00051 Score=64.93 Aligned_cols=57 Identities=16% Similarity=0.464 Sum_probs=44.2
Q ss_pred CcceEEEcCCCCCCCHHHHHHHHhccCCeEEEEEeecCCCCCcceEEEEEeCChHHHHHHHHh
Q 021295 55 KTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAK 117 (314)
Q Consensus 55 ~~~~l~V~nLp~~~~e~~l~~~F~~~G~v~~v~i~~~~~~g~~rG~afV~F~~~~~a~~a~~~ 117 (314)
..++|+|. +|..+++.+|.++|++||+|..+.+..+. .-||+|||.+.++++++++.
T Consensus 52 a~rsv~v~-~~~~~~~~~l~~y~~~~g~i~~~~~~~~~-----g~~~~vef~~~~~~~~~~~~ 108 (464)
T 3pq1_A 52 AQRTVLIH-CPEKISENKFLKYLSQFGPINNHFFYESF-----GLYAVVEFCQKESIGSLQNG 108 (464)
T ss_dssp HHTEEEEE-ECCC---CHHHHHHGGGSCCCCEEEECSS-----SEEEEEECC---CCHHHHSS
T ss_pred hcceEEEE-cCCCCCHHHHHHHHHhcCCcceEEEEccC-----CeEEEEEeCCHHHHHHHHhc
Confidence 45799997 89999999999999999999999887653 35999999999999988765
No 380
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=96.51 E-value=0.0037 Score=45.34 Aligned_cols=35 Identities=20% Similarity=0.329 Sum_probs=31.3
Q ss_pred EEEEECCHHHHHHHHH-ccCccCCcEEEEeecCCCC
Q 021295 13 GFVTYADPSVVDKVIE-DTHIINGKQVEIKRTIPKG 47 (314)
Q Consensus 13 aFV~f~~~~~a~~A~~-~~~~i~g~~i~v~~~~~~~ 47 (314)
+||+|.+.++|.+|++ +...+.++.|+|+.+.+..
T Consensus 52 ~fVtF~d~~sAlaAi~mnG~~v~Gr~LkV~lkt~dW 87 (91)
T 2dnr_A 52 MWVTFLEGSSALNVLSLNGKELLNRTITIALKSPSG 87 (91)
T ss_dssp EEEEESSHHHHHHGGGGTTCEETTEEEEEEECCCSS
T ss_pred EEEEECChHHHHHHHhcCCeEeCCeEEEEEeCCCCc
Confidence 8999999999999999 5568999999999987653
No 381
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.42 E-value=0.0037 Score=46.26 Aligned_cols=51 Identities=20% Similarity=0.568 Sum_probs=43.4
Q ss_pred cEEEEEECCHHHHHHHHHc-cCccCCcEEEEeecCCCCCCCCCCCCcceEEEcCCCCCCC
Q 021295 11 GFGFVTYADPSVVDKVIED-THIINGKQVEIKRTIPKGAVGSKDFKTKKIFVGGIPSSVN 69 (314)
Q Consensus 11 G~aFV~f~~~~~a~~A~~~-~~~i~g~~i~v~~~~~~~~~~~~~~~~~~l~V~nLp~~~~ 69 (314)
.-|+|+|.+.+.|++.|++ .|.+.+.+|.|....++ ...+|+|.+|+..|+
T Consensus 48 ~~AvItF~d~~va~rVL~k~~H~L~~~~LsV~P~~~~--------~~~r~ll~gl~~~t~ 99 (104)
T 2dhx_A 48 CGGVLTFREPADAERVLAQADHELHGAQLSLRPAPPR--------APARLLLQGLPPGTS 99 (104)
T ss_dssp TEEEEEESSHHHHHHHHTCSCCBSSSSBCEEEECCCC--------CCCCCCCCSCCCCCC
T ss_pred CcEEEEEcChHHHHHHhcCCcceecCeEEEEEcCCCC--------CcceEeeecCCCCCC
Confidence 5689999999999999996 89999999999775543 456889999998875
No 382
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=96.22 E-value=0.0031 Score=57.51 Aligned_cols=69 Identities=7% Similarity=0.131 Sum_probs=40.1
Q ss_pred cccEEEEEECCHHHHHHHHHccC--cc---CCc--EEEEeecCCCCC--CCCCCCCcceEEEcCCCCCCCHHHHHHHHhc
Q 021295 9 PRGFGFVTYADPSVVDKVIEDTH--II---NGK--QVEIKRTIPKGA--VGSKDFKTKKIFVGGIPSSVNEDEFKDFFMQ 79 (314)
Q Consensus 9 ~kG~aFV~f~~~~~a~~A~~~~~--~i---~g~--~i~v~~~~~~~~--~~~~~~~~~~l~V~nLp~~~~e~~l~~~F~~ 79 (314)
+|+||||+|++.++|++|++.++ ++ .++ .|.+........ ......+.-..| +|..++++|=.+++++
T Consensus 55 ~kgfaFV~f~~~~~A~~Ai~~lnG~~~~~~~g~~~~ly~~~~~~~~~~~~~~~~lp~Gl~~---~p~fis~~Ee~~Ll~~ 131 (345)
T 3tht_A 55 NKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKITLYLNFVEKVQWKELRPQALPPGLMV---VEEIISSEEEKMLLES 131 (345)
T ss_dssp TCSEEEEEESSHHHHHHHHHHTTTCEEECTTSCEEECEEEECSSEEEEEEECCSCCTTEEE---ETTCSCHHHHHHHHTT
T ss_pred CCCEEEEEECCHHHHHHHHHHhCCCccccccCCceEEEEEEeecccccccccccCCCceEE---EcCcCCHHHHHHHHHh
Confidence 68999999999999999999543 22 233 333333321111 011222233223 4666777777777765
Q ss_pred c
Q 021295 80 F 80 (314)
Q Consensus 80 ~ 80 (314)
.
T Consensus 132 i 132 (345)
T 3tht_A 132 V 132 (345)
T ss_dssp C
T ss_pred c
Confidence 4
No 383
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=96.04 E-value=0.0067 Score=46.93 Aligned_cols=78 Identities=22% Similarity=0.388 Sum_probs=54.6
Q ss_pred cceEEEcCCCCCCCHHHHHHHHhccCCeEE-EEEeecC--------CCC-----CcceEEEEEeCChHHHHHHHHhcCCe
Q 021295 56 TKKIFVGGIPSSVNEDEFKDFFMQFGDVQE-HQIMRDH--------STS-----RSRGFGFITFDTEQAVDDLLAKGNKL 121 (314)
Q Consensus 56 ~~~l~V~nLp~~~~e~~l~~~F~~~G~v~~-v~i~~~~--------~~g-----~~rG~afV~F~~~~~a~~a~~~l~~~ 121 (314)
...|.|=+.|.+.+ ..|.++|++||.|.+ +.+.++. .+. .......|+|+++.+|++||.+ |+.
T Consensus 7 e~~VtVFGFp~~~~-~~VI~~Fs~~G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL~~-NG~ 84 (132)
T 3p3d_A 7 ELAILVFGYPETMA-NQVIAYFQEFGTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDALLE-NGA 84 (132)
T ss_dssp -CEEEEECCCGGGH-HHHHHHHGGGSCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHHTT-TTC
T ss_pred ceEEEEEecCHHHH-HHHHHHHHhhceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHHHh-CCe
Confidence 45677778877665 556688999999876 3222100 000 0234779999999999999999 999
Q ss_pred eeCCeEEEEeecCC
Q 021295 122 ELAGAQVEVKKAEP 135 (314)
Q Consensus 122 ~~~gr~l~V~~a~~ 135 (314)
.|.+.-|-|.+..+
T Consensus 85 ii~G~mIGV~Py~~ 98 (132)
T 3p3d_A 85 VFNGVLLGVIPYTK 98 (132)
T ss_dssp EETTEECEEEECCH
T ss_pred EeCcEEEEEEECCH
Confidence 99998777776643
No 384
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=95.77 E-value=0.0083 Score=43.76 Aligned_cols=33 Identities=27% Similarity=0.410 Sum_probs=29.5
Q ss_pred EEEEECCHHHHHHHHH-ccCccCCcEEEEeecCC
Q 021295 13 GFVTYADPSVVDKVIE-DTHIINGKQVEIKRTIP 45 (314)
Q Consensus 13 aFV~f~~~~~a~~A~~-~~~~i~g~~i~v~~~~~ 45 (314)
+||+|.+.++|.+||+ +...+.++.|+|+...+
T Consensus 61 ~fVtF~d~~sAl~AI~ldG~~v~Gr~L~V~~k~~ 94 (95)
T 1ufw_A 61 MLVTFADSHSALSVLDVDGMKVKGRAVKISGPSS 94 (95)
T ss_dssp EEEECSCSHHHHHHHHGGGSEETTEEEEEECCCC
T ss_pred EEEEEcChHHHHHHHhcCCeeeCCeEEEEeccCC
Confidence 9999999999999999 66799999999987653
No 385
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=95.15 E-value=0.011 Score=46.76 Aligned_cols=42 Identities=10% Similarity=0.056 Sum_probs=37.5
Q ss_pred CCCcceEEEEEeCChHHHHHHHHhc-CCeeeCCeEEEEeecCCC
Q 021295 94 TSRSRGFGFITFDTEQAVDDLLAKG-NKLELAGAQVEVKKAEPK 136 (314)
Q Consensus 94 ~g~~rG~afV~F~~~~~a~~a~~~l-~~~~~~gr~l~V~~a~~~ 136 (314)
..+.+|+++|+|.++++|++|++.+ |...|++ +|.+.++..+
T Consensus 9 g~~l~G~~~ve~~~~~~A~~a~~~~~ng~~~~G-~~~~~~a~~~ 51 (150)
T 2i2y_A 9 GKTLKGETTTEAVDAATAEKVFKQYANDNGVDG-EWTYDDATKT 51 (150)
T ss_dssp CSSSCEEEEEECSSHHHHTTTHHHHHHHHTCCC-EEEEETTTTE
T ss_pred cccccccceeeecCHHHHHHHHHHHhcCCCCCC-ceecccccCc
Confidence 3467999999999999999999999 9999999 9999987753
No 386
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=93.54 E-value=0.041 Score=47.41 Aligned_cols=23 Identities=17% Similarity=0.325 Sum_probs=20.7
Q ss_pred CcccEEEEEECCHHHHHHHHHcc
Q 021295 8 QPRGFGFVTYADPSVVDKVIEDT 30 (314)
Q Consensus 8 ~~kG~aFV~f~~~~~a~~A~~~~ 30 (314)
.+||||||+|.+.++|++|++.+
T Consensus 177 ~~kG~AFV~F~~~~~Ae~A~~am 199 (240)
T 3u1l_A 177 ESKNCGFVKFKYQANAEFAKEAM 199 (240)
T ss_dssp GGGTEEEEEESSHHHHHHHHHHH
T ss_pred CCCCEEEEEeCCHHHHHHHHHHh
Confidence 46999999999999999999863
No 387
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=93.34 E-value=0.2 Score=47.95 Aligned_cols=56 Identities=16% Similarity=0.395 Sum_probs=44.4
Q ss_pred CcceEEEcCCCCCCCHHHHHHHHhccCCeEEEEEeecCCCCCcceEEEEEeCChHHHHHHHHhcC
Q 021295 55 KTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGN 119 (314)
Q Consensus 55 ~~~~l~V~nLp~~~~e~~l~~~F~~~G~v~~v~i~~~~~~g~~rG~afV~F~~~~~a~~a~~~l~ 119 (314)
.+..++|. +|..+...+|.++|+.|+.| +|+.+.+ | .|||.|.+++.|+.+++.++
T Consensus 439 R~~vl~v~-f~~~~~~~~i~~~fs~fg~v-~V~widd--t-----~a~V~~~~~~~a~~~l~~~~ 494 (507)
T 3d45_A 439 RDHVLHVT-FPKEWKTSDLYQLFSAFGNI-QISWIDD--T-----SAFVSLSQPEQVQIAVNTSK 494 (507)
T ss_dssp GGGEEEEE-CCTTCCHHHHHHHGGGGCCC-EEEECSS--S-----EEEEECSCHHHHHHHHHHHT
T ss_pred cCcEEEEe-CCCCCCHHHHHHHHHhcCCE-EEEEEcC--C-----eEEEEECCHHHHHHHHHHHH
Confidence 34556665 99999999999999999954 4544433 2 79999999999999999864
No 388
>2g0c_A ATP-dependent RNA helicase DBPA; RNA recognition motif, hydrolase; 1.70A {Bacillus subtilis} PDB: 3moj_B
Probab=88.54 E-value=0.78 Score=31.49 Aligned_cols=59 Identities=17% Similarity=0.255 Sum_probs=39.0
Q ss_pred CCCHHHHHHHHhccC-----CeEEEEEeecCCCCCcceEEEEEeCChHHHHHHHHhcCCeeeCCeEEEEeecC
Q 021295 67 SVNEDEFKDFFMQFG-----DVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVKKAE 134 (314)
Q Consensus 67 ~~~e~~l~~~F~~~G-----~v~~v~i~~~~~~g~~rG~afV~F~~~~~a~~a~~~l~~~~~~gr~l~V~~a~ 134 (314)
.++..+|..++.... +|-.|+|..+ |.||+.... .++++++.|+...+.++.|.|+.+.
T Consensus 12 ~~~p~~ivg~i~~~~gi~~~~IG~I~i~d~--------~s~v~v~~~-~~~~~~~~l~~~~i~g~~~~v~~~~ 75 (76)
T 2g0c_A 12 KIRAVDFVGTIAKIDGVSADDIGIITIMDN--------ASYVEILNG-KGPHVLKVMKNTTVKGKQLKVNKAN 75 (76)
T ss_dssp ---CHHHHHHHHTSTTCCGGGEEEEEECSS--------CEEEEECTT-CHHHHHHHHTTCCC---CCCEEECC
T ss_pred CCCHHHHHHHHHHccCCChhhccEEEEeCC--------cEEEEECHH-HHHHHHHHhccccCcCceEEEEECC
Confidence 456677877776554 3557777654 789988654 4677888888889999999887764
No 389
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=88.05 E-value=0.6 Score=35.55 Aligned_cols=30 Identities=13% Similarity=0.233 Sum_probs=21.0
Q ss_pred EEEEEECC-HHHHHHHHHccC----ccCCcEEEEe
Q 021295 12 FGFVTYAD-PSVVDKVIEDTH----IINGKQVEIK 41 (314)
Q Consensus 12 ~aFV~f~~-~~~a~~A~~~~~----~i~g~~i~v~ 41 (314)
.|||+|.+ +++|++|+++++ .|.+..+.++
T Consensus 57 tgfVrf~~~~~~A~~av~~ln~~~~~i~g~~~~~e 91 (121)
T 1owx_A 57 EGIILFKEKAKEALGKAKDANNGNLQLRNKEVTWE 91 (121)
T ss_dssp EEEEEESSCHHHHHHHHHHTTTSCBCTTSSSEEEE
T ss_pred EEEEEECCChHHHHHHHHHhhcCCcEEeCcEEEEE
Confidence 49999999 889999888532 4444444443
No 390
>4eyt_A Telomerase associated protein P65; RNA, LA protein, LARP7, RRM, XRRM, RNA binding protein; 2.50A {Tetrahymena thermophila} PDB: 4erd_A
Probab=85.31 E-value=3.8 Score=29.12 Aligned_cols=69 Identities=17% Similarity=0.150 Sum_probs=50.9
Q ss_pred CcceEEEcCCCCCCCHHHHHHHHhccCCeEEEEEeecCCCCCcceEEEEEeCChHHHHHHHHhcCC-------eeeCCeE
Q 021295 55 KTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNK-------LELAGAQ 127 (314)
Q Consensus 55 ~~~~l~V~nLp~~~~e~~l~~~F~~~G~v~~v~i~~~~~~g~~rG~afV~F~~~~~a~~a~~~l~~-------~~~~gr~ 127 (314)
+.+-|-|-|+|..+-..++.-.....|----++.+ .|.|.|.|.+.++...||.+|-+ ++|.++.
T Consensus 11 qnclikiinipqgtlkaevvlavrhlgyefycdyi--------dgqamirfqnsdeqrlaiqkllnhnnnklqieirgqi 82 (129)
T 4eyt_A 11 QNCLIKIINIPQGTLKAEVVLAVRHLGYEFYCDYI--------DGQAMIRFQNSDEQRLAIQKLLNHNNNKLQIEIRGQI 82 (129)
T ss_dssp CSCEEEEECCCTTCCHHHHHHHHHTTCCCEEEEEC--------SSCEEEEESSHHHHHHHHHHHEETTTTEEEEEETTEE
T ss_pred hCcEEEEEecCCCceeeeeEEeehhcCeeEeeeee--------cCeeEEEecCChHHHHHHHHHHhcCCCEEEEEEccee
Confidence 45667889999999999988888877765555554 34799999999999999987511 3455665
Q ss_pred EEEe
Q 021295 128 VEVK 131 (314)
Q Consensus 128 l~V~ 131 (314)
+.|-
T Consensus 83 cdvi 86 (129)
T 4eyt_A 83 CDVI 86 (129)
T ss_dssp EEEE
T ss_pred eeee
Confidence 5554
No 391
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=82.48 E-value=1.2 Score=33.26 Aligned_cols=31 Identities=13% Similarity=0.260 Sum_probs=24.8
Q ss_pred cEEEEEECCHHHHHHHHH--ccCccCCcEEEEe
Q 021295 11 GFGFVTYADPSVVDKVIE--DTHIINGKQVEIK 41 (314)
Q Consensus 11 G~aFV~f~~~~~a~~A~~--~~~~i~g~~i~v~ 41 (314)
+=|+|+|+|..+|-+|.. +..+|.++.|.+.
T Consensus 63 ~GAivef~d~~~AgKasLaL~G~ef~gr~Lr~g 95 (117)
T 2l9w_A 63 NGAIIIFRDSKFAAKMLMILNGSQFQGKVIRSG 95 (117)
T ss_dssp TEEEEECSCHHHHHHHHHHHSSEEETTEEEEEE
T ss_pred CceEEEEccchhhHHHHhhcCCeeecCeEEEec
Confidence 459999999999988875 5567888887764
No 392
>3fry_A Probable copper-exporting P-type ATPase A; transport protein, metal binding domain, domain SWAP, ATP-BI cell membrane, copper transport; HET: CIT; 2.00A {Archaeoglobus fulgidus}
Probab=77.54 E-value=6.7 Score=25.89 Aligned_cols=57 Identities=4% Similarity=-0.033 Sum_probs=43.4
Q ss_pred CcceEEEcCCCCCCCHHHHHHHHhccCCeEEEEEeecCCCCCcceEEEEEeCChHHHHHHHHhc
Q 021295 55 KTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKG 118 (314)
Q Consensus 55 ~~~~l~V~nLp~~~~e~~l~~~F~~~G~v~~v~i~~~~~~g~~rG~afV~F~~~~~a~~a~~~l 118 (314)
...+|.|.++.-..-...|++.+.+ --|..+.+-.. ...+.|+|++.+++.++|+.+
T Consensus 5 ~~~~~~v~gm~C~~C~~~ie~~l~~-~gv~~~~v~~~------~~~~~v~~~~~~~i~~~i~~~ 61 (73)
T 3fry_A 5 EKIVLELSGLSCHHCVARVKKALEE-AGAKVEKVDLN------EAVVAGNKEDVDKYIKAVEAA 61 (73)
T ss_dssp EEEEEEEESSBCGGGHHHHHHHHHH-TTCEEEEECSS------EEEEEEEGGGHHHHHHHHHHT
T ss_pred EEEEEEECCCCCHHHHHHHHHHhcc-CCcEEEEEEcc------CCEEEEEECCHHHHHHHHHHc
Confidence 3457888888877788999999998 77888877543 346788888677777888763
No 393
>4e8u_A Putative uncharacterized protein T8P19.180; XS domain, RNA binding protein, RNA directed DNA methylation; 2.70A {Arabidopsis thaliana}
Probab=69.48 E-value=17 Score=29.20 Aligned_cols=49 Identities=16% Similarity=0.294 Sum_probs=33.3
Q ss_pred ceEEEcCCCC-C--------CCHHHHHHHH--hccCCeEEEEEeecCCCCCcceEEEEEeCCh
Q 021295 57 KKIFVGGIPS-S--------VNEDEFKDFF--MQFGDVQEHQIMRDHSTSRSRGFGFITFDTE 108 (314)
Q Consensus 57 ~~l~V~nLp~-~--------~~e~~l~~~F--~~~G~v~~v~i~~~~~~g~~rG~afV~F~~~ 108 (314)
-.+.|-|+|. . .+..+|++.| +.|.+++... +.++ .-+.++|+|+|.+.
T Consensus 13 wmgIl~N~~t~~~~dg~~~G~s~~~l~~~~~~~~F~p~kv~~-l~~~--~Gh~g~aIv~F~~d 72 (172)
T 4e8u_A 13 WKGIVVNIPTTKAQDGRSAGESGSKLRDEYILRGFNPTRVRP-LWNY--LGHSGTAIVEFNKD 72 (172)
T ss_dssp CEEEEECCCCEECTTSCEECCCSHHHHHHHHHTTCCCSEEEE-EECS--SBEEEEEEEECCSS
T ss_pred CEEEEEeccccccCCCCccCCCHHHHHHHHHhcCCCCceeEe-cccC--CCCceeEEEEecCC
Confidence 3556677765 2 3458999977 8998876444 4432 23688999999774
No 394
>2lfv_A Protein DAMX; cell division, peptidoglycan binding domain, murein binding bacterial cell division protein, RNP fold, RNP domain, cell; NMR {Escherichia coli}
Probab=70.88 E-value=1.1 Score=33.23 Aligned_cols=52 Identities=6% Similarity=0.123 Sum_probs=33.6
Q ss_pred CCCHHHHHHHHhccCCeEEEEEeecCCCCCcceEEE--EEeCChHHHHHHHHhcCC
Q 021295 67 SVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGF--ITFDTEQAVDDLLAKGNK 120 (314)
Q Consensus 67 ~~~e~~l~~~F~~~G~v~~v~i~~~~~~g~~rG~af--V~F~~~~~a~~a~~~l~~ 120 (314)
..++++|.++.++.. +..+.|.+....++.. |.. =.|.+.++|++|++.|..
T Consensus 33 ~~~~~~l~~f~~~~~-l~~~~v~~t~rnGk~W-yvVlyG~Y~s~~~A~~A~~~LP~ 86 (106)
T 2lfv_A 33 SSNYDNLNGWAKKEN-LKNYVVYETTRNGQPW-YVLVSGVYASKEEAKKAVSTLPA 86 (106)
Confidence 345677777777765 4556666544333322 332 378999999999998754
No 395
>2cu1_A Mitogen-activated protein kinase kinase kinase 2; PB1 domain, MAPK/ERK kinase kinase 2, MEK kinase 2, MEKK 2, signaling protein; NMR {Homo sapiens} SCOP: d.15.2.2
Probab=65.74 E-value=7.5 Score=28.16 Aligned_cols=53 Identities=13% Similarity=0.238 Sum_probs=39.2
Q ss_pred EcCCCCCCCHHHHHHHH-hccCCeEEEEEeecCCCCCcceEEEEEeCChHHHHHHHHhcCCe
Q 021295 61 VGGIPSSVNEDEFKDFF-MQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKL 121 (314)
Q Consensus 61 V~nLp~~~~e~~l~~~F-~~~G~v~~v~i~~~~~~g~~rG~afV~F~~~~~a~~a~~~l~~~ 121 (314)
|--++..++-+||.... +.||.-.++..+.+ -..|-..+.+++++||+.|+..
T Consensus 21 Ii~f~RPv~f~eL~~Kv~~~fGq~ldL~y~n~--------EllIpl~sQeDLDkaIellDrs 74 (103)
T 2cu1_A 21 ILQFPRPVKLEDLRSKAKIAFGQSMDLHYTNN--------ELVIPLTTQDDLDKAVELLDRS 74 (103)
T ss_dssp EEEEESSCCHHHHHHHHHHHHSSCEEEEECSS--------SSCEECCSHHHHHHHHHHHHHC
T ss_pred EEeccCCccHHHHHHHHHHHhCCeeeEEEecc--------eEEEeccCHHHHHHHHHHHccC
Confidence 33466777878887555 56888777777622 3789999999999999986543
No 396
>2exu_A Transcription initiation protein SPT4/SPT5; helixs surrounding beta sheet; 2.23A {Saccharomyces cerevisiae}
Probab=65.06 E-value=8.3 Score=31.86 Aligned_cols=28 Identities=7% Similarity=0.128 Sum_probs=24.6
Q ss_pred cceEEEEEeCChHHHHHHHHhcCCeeeC
Q 021295 97 SRGFGFITFDTEQAVDDLLAKGNKLELA 124 (314)
Q Consensus 97 ~rG~afV~F~~~~~a~~a~~~l~~~~~~ 124 (314)
.|||.|||-.+..++++||+.+..+...
T Consensus 148 lkGYIyVEA~~~~~V~~ai~Gi~~vy~~ 175 (200)
T 2exu_A 148 YTGRIYIEAPKQSVIEKFCNGVPDIYIS 175 (200)
T ss_dssp STTEEEEECSCHHHHHHHHTTCTTEEEE
T ss_pred CcEEEEEEECCHHHHHHHHhhhhhhhcC
Confidence 6899999999999999999998776543
No 397
>3zzp_A TS9, ribosomal protein S6; protein folding, RNA-binding; 0.96A {Thermus thermophilus}
Probab=63.37 E-value=14 Score=25.40 Aligned_cols=59 Identities=8% Similarity=0.038 Sum_probs=36.3
Q ss_pred EEEEEECCHHHHHHHHHccCccCCcEE---EEeecCCCCCCCCCCCCcceEEEcCCCCCCCHHHHHHHHhcc
Q 021295 12 FGFVTYADPSVVDKVIEDTHIINGKQV---EIKRTIPKGAVGSKDFKTKKIFVGGIPSSVNEDEFKDFFMQF 80 (314)
Q Consensus 12 ~aFV~f~~~~~a~~A~~~~~~i~g~~i---~v~~~~~~~~~~~~~~~~~~l~V~nLp~~~~e~~l~~~F~~~ 80 (314)
|.++.|+.+.++.+.++....++..-| .++...+ .+--++|| |.++++|++++.++++|
T Consensus 7 Yvl~~~~a~~~~i~Eler~~rine~VlR~l~vr~d~~--------r~YE~m~I--l~P~l~ee~~~~~vek~ 68 (77)
T 3zzp_A 7 TTWYQVEMPEDRVNDLARELRIRDNVRRVMVVASTTP--------GRYEVNIV--LNPNLDQSQLQNEKEII 68 (77)
T ss_dssp EEEEEEECCHHHHHHHHHHHHTSTTEEEEEEEECSST--------TEEEEEEE--ECTTCCHHHHHHHHHHH
T ss_pred EEEEEEEeCHhHHHHHHHHhCCCHHHHHHHHHhccCC--------CceEEEEE--ECCCCCHHHHHHHHHHH
Confidence 788999877777777764444444433 3332111 12234666 56678898888887775
No 398
>3bb5_A Stress responsive alpha-beta protein; dimeric ferredoxin-like protein, structural genomics, joint for structural genomics, JCSG; HET: CIT; 2.30A {Jannaschia SP}
Probab=61.96 E-value=31 Score=25.71 Aligned_cols=60 Identities=12% Similarity=0.119 Sum_probs=38.6
Q ss_pred cceEEEcCCCCCCCHHHHHHHHh-------ccCCeEEEEEeecCCC-CCcceE---EEEEeCChHHHHHHH
Q 021295 56 TKKIFVGGIPSSVNEDEFKDFFM-------QFGDVQEHQIMRDHST-SRSRGF---GFITFDTEQAVDDLL 115 (314)
Q Consensus 56 ~~~l~V~nLp~~~~e~~l~~~F~-------~~G~v~~v~i~~~~~~-g~~rG~---afV~F~~~~~a~~a~ 115 (314)
-+.|.+-.|..+++++++.++.+ +.-.|+.+.+-++... ...++| .+++|+|.++.+.-+
T Consensus 21 i~HIVlfklK~~~~~~~~~~~~~~l~~L~~~ip~i~~~~~G~~~s~e~~~~g~~~~l~~~F~s~e~l~~Y~ 91 (121)
T 3bb5_A 21 LYHLVMLEPEGEGAMDRIMEAMAILDGLAPELPGLTEFRHGPNRDFEQKSERYPYGFLCTFTDKAALDAYA 91 (121)
T ss_dssp EEEEEEECBCSTTHHHHHHHHHHHHHHHGGGCTTEEEEEEEEBCCTTSSCTTCCEEEEEEESSHHHHHHHH
T ss_pred EEEEEEEEECCCCCHHHHHHHHHHHHHHHhcCCCeEEEEECCCCCccccCCCeeEEEEEEECCHHHHHHHH
Confidence 34566668888888876665544 3456788887776432 233443 357899988876644
No 399
>2kjw_A TS9, 30S ribosomal protein S6; S6 permutant, solution structure, backbone dynamics, folding, ribonucleoprotein, RNA-binding, rRNA-binding; NMR {Thermus thermophilus}
Probab=61.54 E-value=7.9 Score=27.96 Aligned_cols=59 Identities=8% Similarity=0.010 Sum_probs=36.5
Q ss_pred EEEEEECCHHHHHHHHHccCccCC---cEEEEeecCCCCCCCCCCCCcceEEEcCCCCCCCHHHHHHHHhcc
Q 021295 12 FGFVTYADPSVVDKVIEDTHIING---KQVEIKRTIPKGAVGSKDFKTKKIFVGGIPSSVNEDEFKDFFMQF 80 (314)
Q Consensus 12 ~aFV~f~~~~~a~~A~~~~~~i~g---~~i~v~~~~~~~~~~~~~~~~~~l~V~nLp~~~~e~~l~~~F~~~ 80 (314)
|+++.|+.+.++.+.++....++. +.+.++... ...--++|| |.+++++++++++.+++
T Consensus 7 Y~~~~~~a~~~~v~eler~~r~~e~vlR~l~v~~e~--------Mr~YE~m~I--l~P~l~ee~~~~~ve~~ 68 (96)
T 2kjw_A 7 FLWYQVEMPEDRVNDLARELRIRDNVRRVMVVASTT--------PGRYEVNIV--LNPNLDQSQLALEKEII 68 (96)
T ss_dssp CEEECCCCCHHHHHHHHHHHHHCTTCSEEEEEECSS--------SSCEEEEEE--CCSSCCHHHHHHHHHHH
T ss_pred EEEEEeecChhHHHHHHHHhccchhhhhhhheehhh--------hhhhheeee--eCCCCCHHHHHHHHHHH
Confidence 789999988888877773333333 223333211 122345666 77888998888777665
No 400
>3bgu_A Ferredoxin-like protein of unknown function; ferredoxin-like fold, stress responsive A/B barrel domain, S genomics; 1.50A {Thermobifida fusca}
Probab=61.46 E-value=41 Score=24.76 Aligned_cols=59 Identities=10% Similarity=0.132 Sum_probs=37.6
Q ss_pred cceEEEcCCCCCCCHHHHHHHHhc-------cCCeEEEEEeecCCCCCcceE---EEEEeCChHHHHHHH
Q 021295 56 TKKIFVGGIPSSVNEDEFKDFFMQ-------FGDVQEHQIMRDHSTSRSRGF---GFITFDTEQAVDDLL 115 (314)
Q Consensus 56 ~~~l~V~nLp~~~~e~~l~~~F~~-------~G~v~~v~i~~~~~~g~~rG~---afV~F~~~~~a~~a~ 115 (314)
-+.|.+-.|...++++++.++.+. .-.|+.+.+-++.. ...++| -+++|+|.++.++-+
T Consensus 22 I~HIVlfklK~~~s~e~~~~~~~~l~~L~~~ip~i~~~~~G~~~s-~~~~g~d~~l~~~F~s~edl~~Y~ 90 (116)
T 3bgu_A 22 IRHIALFRWNDTVTPDQVEQVITALSKLPAAIPELKNYAFGADLG-LAAGNYDFAVVADLDGEDGFRAYQ 90 (116)
T ss_dssp EEEEEEEEECTTCCHHHHHHHHHHHHHCCCCCTTEEEEEEEECCS-CSTTCCSEEEEEEEEHHHHHHHHH
T ss_pred EEEEEEEEECCCCCHHHHHHHHHHHHHHhhcCCceEEEEEccCCC-CCCCCeeEEEEEEECCHHHHHHHh
Confidence 445666678888888876665543 34567777776643 333443 456888888776543
No 401
>4hhu_A OR280; engineered protein, PSI-biology, structural genomi unknown function; HET: AE4 PG4; 2.00A {Synthetic construct}
Probab=60.51 E-value=28 Score=25.95 Aligned_cols=100 Identities=20% Similarity=0.269 Sum_probs=54.6
Q ss_pred CCHHHHHHHHHccC----ccCCcEEEEeecCCCCCCCCCCCCcceEEEcCCCCCCCHHHHH---HHHhccCCeEEEEEee
Q 021295 18 ADPSVVDKVIEDTH----IINGKQVEIKRTIPKGAVGSKDFKTKKIFVGGIPSSVNEDEFK---DFFMQFGDVQEHQIMR 90 (314)
Q Consensus 18 ~~~~~a~~A~~~~~----~i~g~~i~v~~~~~~~~~~~~~~~~~~l~V~nLp~~~~e~~l~---~~F~~~G~v~~v~i~~ 90 (314)
.|.++.++|++++. .+.+.....- +-..-.|.|..+|..+..+-.+ .+-.+|-.-+...|+-
T Consensus 11 ddlea~ekalkemirqarkfagtvtytl-----------~gn~l~i~itgvpeqvrkelakeaerl~~efni~v~y~img 79 (170)
T 4hhu_A 11 DDLEALEKALKEMIRQARKFAGTVTYTL-----------SGNRLVIVITGVPEQVRKELAKEAERLKAEFNINVQYQIMG 79 (170)
T ss_dssp SCHHHHHHHHHHHHHHHHHTTCEEEEEE-----------ETTEEEEEEESCCHHHHHHHHHHHHHHHHHHTCEEEEEEEC
T ss_pred CcHHHHHHHHHHHHHHHHhhcceEEEEE-----------eCCEEEEEEeCCcHHHHHHHHHHHHHHHHhcceEEEEEEEe
Confidence 57788888887542 2332211110 1123456778888776543322 2223343334444543
Q ss_pred cCCCCCcceEEEEEe--CChHHHHHHHHhc-------CC---eeeCCeEEEEeec
Q 021295 91 DHSTSRSRGFGFITF--DTEQAVDDLLAKG-------NK---LELAGAQVEVKKA 133 (314)
Q Consensus 91 ~~~~g~~rG~afV~F--~~~~~a~~a~~~l-------~~---~~~~gr~l~V~~a 133 (314)
. ..+.-.|.| ++.++.++||+.| .+ ..+.+..|.|...
T Consensus 80 s-----gsgvm~i~f~gddlea~ekalkemirqarkfagtvtytl~gn~l~i~it 129 (170)
T 4hhu_A 80 S-----GSGVMVIVFEGDDLEALEKALKEMIRQARKFAGTVTYTLSGNRLVIVIT 129 (170)
T ss_dssp T-----TCCEEEEEEECSCHHHHHHHHHHHHHHHHHTTCEEEEEECSSEEEEEEE
T ss_pred C-----CceEEEEEEecCcHHHHHHHHHHHHHHHHhhcceEEEEEeCCEEEEEEe
Confidence 2 345666777 5778999998764 22 4477777776543
No 402
>2qyc_A Ferredoxin-like protein; stress responsive A/B barrel domain, structural genomics, JO center for structural genomics, JCSG; HET: MSE; 1.90A {Bordetella bronchiseptica RB50}
Probab=60.24 E-value=29 Score=24.83 Aligned_cols=54 Identities=13% Similarity=0.175 Sum_probs=34.4
Q ss_pred EEEcCCCCCCCHHHHHHHHh-------ccCCeEEEEEeecCCCCCcceE---EEEEeCChHHHHH
Q 021295 59 IFVGGIPSSVNEDEFKDFFM-------QFGDVQEHQIMRDHSTSRSRGF---GFITFDTEQAVDD 113 (314)
Q Consensus 59 l~V~nLp~~~~e~~l~~~F~-------~~G~v~~v~i~~~~~~g~~rG~---afV~F~~~~~a~~ 113 (314)
|.+-.|...+++++++++.+ +.-.|+.+.+-++.. ...++| -+++|+|.++.+.
T Consensus 8 iVlfk~k~~~~~~~~~~~~~~l~~L~~~ip~i~~~~~G~~~~-~~~~~~~~~~~~~F~s~e~l~~ 71 (103)
T 2qyc_A 8 VVMMEFDDGIDAGFFRTVDEYVARMKRECDGLLLYHFGENVA-ARSQGYTHATSSAFVDAAAHDA 71 (103)
T ss_dssp EEEEEECTTCCHHHHHHHHHHHHHHHHHSTTEEEEEEEECCC-TTCTTCCEEEEEEESSHHHHHH
T ss_pred EEEEEECCCCCHHHHHHHHHHHHHhhhcCCCeEEEEECCCCC-CCCCCccEEEEEEECCHHHHHH
Confidence 44456777777766655443 356688888877743 333443 4568999887755
No 403
>3lpe_A Putative transcription antitermination protein NU; transcription regulation, SPT4, SPT5, NUSG, archaea, evoluti directed RNA polymerase; 1.90A {Methanocaldococcus jannaschii} PDB: 3ewg_A
Probab=59.97 E-value=25 Score=24.87 Aligned_cols=34 Identities=15% Similarity=0.267 Sum_probs=26.0
Q ss_pred eEEEEEeecCCCCCcceEEEEEeCChHHHHHHHHhcCCe
Q 021295 83 VQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKL 121 (314)
Q Consensus 83 v~~v~i~~~~~~g~~rG~afV~F~~~~~a~~a~~~l~~~ 121 (314)
|.+|.++. ...||.||+++..+++..+|+.+.++
T Consensus 40 i~~v~vP~-----~fPGYVfVe~~~~~~~~~~I~~t~gV 73 (92)
T 3lpe_A 40 VYSILASE-----SLKGYVLVEAETKGDVEELIKGMPRV 73 (92)
T ss_dssp EEEEEECT-----TSTTEEEEEESSHHHHHHHHTTCTTE
T ss_pred EEEEEEec-----ccCCEEEEEEecchhHHHHHHCCCCc
Confidence 55555543 27899999999999998898876554
No 404
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=59.30 E-value=8.4 Score=28.27 Aligned_cols=34 Identities=9% Similarity=0.072 Sum_probs=27.3
Q ss_pred EEEEECCHHHHHHHHHcc--CccCCcEEEEeecCCC
Q 021295 13 GFVTYADPSVVDKVIEDT--HIINGKQVEIKRTIPK 46 (314)
Q Consensus 13 aFV~f~~~~~a~~A~~~~--~~i~g~~i~v~~~~~~ 46 (314)
..|.|.++++|.+|-..+ ..+.++.+++-...+.
T Consensus 49 irv~F~~~~~A~~AR~~Lh~~~f~g~~~r~YFgq~~ 84 (104)
T 1wey_A 49 VRINFSNPLSAADARLRLHKTEFLGKEMKLYFAQTL 84 (104)
T ss_dssp EEEECSSTTHHHHHHHTSTTSEETTEECEEECCCCS
T ss_pred EEEEeCChHHHHHHHHHhccceecCceeEEEecCCC
Confidence 468999999999998844 4789999998877644
No 405
>3h7h_B Transcription elongation factor SPT5; helices surrounding beta sheet, activator, ME binding, nucleus, repressor, transcription regulation; 1.55A {Homo sapiens}
Probab=57.98 E-value=15 Score=27.06 Aligned_cols=26 Identities=12% Similarity=0.265 Sum_probs=22.6
Q ss_pred cceEEEEEeCChHHHHHHHHhcCCee
Q 021295 97 SRGFGFITFDTEQAVDDLLAKGNKLE 122 (314)
Q Consensus 97 ~rG~afV~F~~~~~a~~a~~~l~~~~ 122 (314)
.+||.|||=.+..++++||+.+..+.
T Consensus 50 lkGyIyVEA~~~~~V~~ai~gi~~v~ 75 (106)
T 3h7h_B 50 VKGYIYVEAYKQTHVKQAIEGVGNLR 75 (106)
T ss_dssp CCSEEEEEESSHHHHHHHHTTCGGGG
T ss_pred CceEEEEEeCCHHHHHHHHhccccee
Confidence 68999999999999999999875543
No 406
>1q4r_A Protein AT3G17210; center for eukaryotic structural genom structural genomics, protein structure initiative, CESG, UN function; 1.90A {Arabidopsis thaliana} SCOP: d.58.4.4 PDB: 1q53_A 2q3p_A
Probab=56.68 E-value=36 Score=24.80 Aligned_cols=59 Identities=15% Similarity=0.340 Sum_probs=37.1
Q ss_pred ceEEEcCCCCCCCHHHHHHHHhc-------cCCeEEEEEeecCCC-CCcceE---EEEEeCChHHHHHHH
Q 021295 57 KKIFVGGIPSSVNEDEFKDFFMQ-------FGDVQEHQIMRDHST-SRSRGF---GFITFDTEQAVDDLL 115 (314)
Q Consensus 57 ~~l~V~nLp~~~~e~~l~~~F~~-------~G~v~~v~i~~~~~~-g~~rG~---afV~F~~~~~a~~a~ 115 (314)
+.|.+-.|...++++++.++.+. .-.|+.+.+-++... ...++| -+++|+|.++.+.-+
T Consensus 12 ~HiVlfklk~~~~~~~~~~~~~~l~~L~~~ip~i~~~~~G~~~~~~~~~~~~d~~l~~~F~s~e~l~~Y~ 81 (112)
T 1q4r_A 12 KHVLLASFKDGVSPEKIEELIKGYANLVNLIEPMKAFHWGKDVSIENLHQGYTHIFESTFESKEAVAEYI 81 (112)
T ss_dssp EEEEEEEECTTCCHHHHHHHHHHHHTHHHHCTTCCEEEEEECCCSSSCSTTCCEEEEEEESCHHHHHHHH
T ss_pred EEEEEEEECCCCCHHHHHHHHHHHHHHhhhCCceEEEEEccCCCccccCCCccEEEEEEECCHHHHHHHh
Confidence 44555678888888776655433 455777777766433 233343 457999988876643
No 407
>3j21_T 50S ribosomal protein L23P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=56.12 E-value=23 Score=24.91 Aligned_cols=55 Identities=7% Similarity=0.123 Sum_probs=37.7
Q ss_pred EcCCCCCCCHHHHHHHHhcc-C-CeEEEEEeecCCCCCcceEEEEEeCChHHHHHHHHhc
Q 021295 61 VGGIPSSVNEDEFKDFFMQF-G-DVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKG 118 (314)
Q Consensus 61 V~nLp~~~~e~~l~~~F~~~-G-~v~~v~i~~~~~~g~~rG~afV~F~~~~~a~~a~~~l 118 (314)
+-.++..++..+|++.++++ . +|+.|..+..+. + .--|+|++....+|.....++
T Consensus 27 ~F~Vd~~AnK~qIK~AVe~lf~VkV~~VNTl~~~~-~--~KKA~V~L~~~~~a~dva~ki 83 (86)
T 3j21_T 27 TFIVDRRATKQDIKRAVEEIFNVKVEKVNTLITPR-G--EKKAYVKLKPEYSASEVAARL 83 (86)
T ss_dssp EEEECTTCCHHHHHHHHHHHTTCCEEEEEEEECTT-S--CEEEEEEECTTSCHHHHHHHS
T ss_pred EEEEcCCCCHHHHHHHHHHHcCCCceEEEEeEcCC-C--ceEEEEEcCCCCcHHHHHHhh
Confidence 33466788999999999875 3 466676665431 1 225999999888777766553
No 408
>2i9x_A Putative septation protein spovg; APC86317.1, staphylococcus epidermidis ATCC 12228, ST genomics, PSI-2, protein structure initiative; 1.80A {Staphylococcus epidermidis} SCOP: d.366.1.1
Probab=54.52 E-value=15 Score=25.91 Aligned_cols=27 Identities=19% Similarity=0.263 Sum_probs=23.0
Q ss_pred CCeEEEEEeecCCCCCcceEEEEEeCC
Q 021295 81 GDVQEHQIMRDHSTSRSRGFGFITFDT 107 (314)
Q Consensus 81 G~v~~v~i~~~~~~g~~rG~afV~F~~ 107 (314)
-+|++|+|.+-...++.++||-|+|++
T Consensus 4 m~iTdVri~~~~~~g~lka~asVt~dd 30 (87)
T 2i9x_A 4 MKVTDVRLRKIQTDGRMKALVSITLDE 30 (87)
T ss_dssp CCEEEEEEEECCSSSSEEEEEEEEETT
T ss_pred cEEEEEEEEEcCCCCCEEEEEEEEECC
Confidence 368899998877778899999999976
No 409
>3dxs_X Copper-transporting ATPase RAN1; CXXC motif, ferredoxin-like fold, ATP- binding, ethylene signaling pathway, hydrolase, ION transport; 1.70A {Arabidopsis thaliana} SCOP: d.58.17.0
Probab=54.50 E-value=30 Score=22.34 Aligned_cols=56 Identities=13% Similarity=0.220 Sum_probs=40.2
Q ss_pred ceEEEcCCCCCCCHHHHHHHHhccCCeEEEEEeecCCCCCcceEEEEEeC----ChHHHHHHHHhc
Q 021295 57 KKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFD----TEQAVDDLLAKG 118 (314)
Q Consensus 57 ~~l~V~nLp~~~~e~~l~~~F~~~G~v~~v~i~~~~~~g~~rG~afV~F~----~~~~a~~a~~~l 118 (314)
.+|.|.++.-..-...|++.+.+.--|..+.+-.. ...+.|+|+ +.+++.++|+.+
T Consensus 4 ~~~~v~gm~C~~C~~~ie~~l~~~~gv~~~~v~~~------~~~~~v~~~~~~~~~~~i~~~i~~~ 63 (74)
T 3dxs_X 4 IQVGVTGMTCAACSNSVEAALMNVNGVFKASVALL------QNRADVVFDPNLVKEEDIKEEIEDA 63 (74)
T ss_dssp EEEEEECCCSHHHHHHHHHHHHTSTTEEEEEEEGG------GTEEEEEECTTTCCHHHHHHHHHHH
T ss_pred EEEEECCcCCHHHHHHHHHHHhcCCCEEEEEEEec------CCEEEEEECCCCCCHHHHHHHHHHC
Confidence 45677777766667889999998877888777654 236888885 456677777763
No 410
>1tr0_A Stable protein 1; plant protein; 1.80A {Populus tremula} SCOP: d.58.4.4 PDB: 1si9_A
Probab=54.15 E-value=34 Score=24.66 Aligned_cols=58 Identities=10% Similarity=0.270 Sum_probs=36.6
Q ss_pred ceEEEcCCCCCCCHHHHHHHHh-------ccCCeEEEEEeecCCC---CCcceE---EEEEeCChHHHHHH
Q 021295 57 KKIFVGGIPSSVNEDEFKDFFM-------QFGDVQEHQIMRDHST---SRSRGF---GFITFDTEQAVDDL 114 (314)
Q Consensus 57 ~~l~V~nLp~~~~e~~l~~~F~-------~~G~v~~v~i~~~~~~---g~~rG~---afV~F~~~~~a~~a 114 (314)
+.|.+-.|...++++++.++.+ +.-.|+.+.+-++... ...++| -+++|+|.++.+.-
T Consensus 10 ~HiVlfklk~~~~~~~~~~~~~~l~~L~~~ip~i~~~~~G~~~~~~~~~~~~~~d~~l~~~F~s~e~l~~Y 80 (108)
T 1tr0_A 10 KHTLLTRFKDEITREQIDNYINDYTNLLDLIPSMKSFNWGTDLGMESAELNRGYTHAFESTFESKSGLQEY 80 (108)
T ss_dssp EEEEEEEECTTCCHHHHHHHHHHHHHHHHHCTTCCEEEEEECCSCSCTTTTTTCCEEEEEEESSHHHHHHH
T ss_pred EEEEEEEECCCCCHHHHHHHHHHHHHHhhcCCceEEEEEccCCCccccccCCCccEEEEEEECCHHHHHHH
Confidence 4455567888888877655543 3456777877766432 333443 45789998887653
No 411
>2kpo_A Rossmann 2X2 fold protein; de novo designed, rossmann fold, NESG, GFT structural G PSI-2, protein structure initiative; NMR {Artificial gene}
Probab=51.44 E-value=17 Score=25.13 Aligned_cols=51 Identities=22% Similarity=0.337 Sum_probs=31.6
Q ss_pred CCHHHHHHHHhccCCe-EEEEEeecCCCCCcceEEEEEeCChHHHHHHHHhcCCeeeCCeEEEEe
Q 021295 68 VNEDEFKDFFMQFGDV-QEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVK 131 (314)
Q Consensus 68 ~~e~~l~~~F~~~G~v-~~v~i~~~~~~g~~rG~afV~F~~~~~a~~a~~~l~~~~~~gr~l~V~ 131 (314)
.+|++|+++++.|-+- ..|+ ..|...+.+++++|.+..++++|+-+.-+|.
T Consensus 33 ktedelkkyleefrkesqnik-------------vlilvsndeeldkakelaqkmeidvrtrkvt 84 (110)
T 2kpo_A 33 KTEDELKKYLEEFRKESQNIK-------------VLILVSNDEELDKAKELAQKMEIDVRTRKVT 84 (110)
T ss_dssp CSHHHHHHHHHHHTSSTTSEE-------------EEEEESSHHHHHHHHHHHHHTTCCEEEEECS
T ss_pred ccHHHHHHHHHHHHhhccCeE-------------EEEEEcChHHHHHHHHHHHhhceeeeeeecC
Confidence 3789999888877321 1111 2344456777888877666667766665553
No 412
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=50.38 E-value=17 Score=27.78 Aligned_cols=34 Identities=15% Similarity=0.309 Sum_probs=27.1
Q ss_pred ccEEEEEECCHHHHHHHHH-ccCccCCcEEEEeec
Q 021295 10 RGFGFVTYADPSVVDKVIE-DTHIINGKQVEIKRT 43 (314)
Q Consensus 10 kG~aFV~f~~~~~a~~A~~-~~~~i~g~~i~v~~~ 43 (314)
.-.-.|+|.++.+|++||. +...|.+..|-|++.
T Consensus 62 ~NWikItYds~~~A~rAL~~NG~ii~G~mIGV~Py 96 (132)
T 3p3d_A 62 NSWTKITYDNPASAVDALLENGAVFNGVLLGVIPY 96 (132)
T ss_dssp TTEEEEEBSSHHHHHHHHTTTTCEETTEECEEEEC
T ss_pred CcEEEEEcCCHHHHHHHHHhCCeEeCcEEEEEEEC
Confidence 4566899999999999999 667788876666643
No 413
>2ia9_A Putative septation protein spovg; APC85465, bacillus subtilis subsp. subtilis STR. 168, structural genomics, PSI-2; 3.00A {Bacillus subtilis} SCOP: d.366.1.1
Probab=49.72 E-value=20 Score=26.07 Aligned_cols=27 Identities=26% Similarity=0.383 Sum_probs=23.0
Q ss_pred CCeEEEEEeecCCCCCcceEEEEEeCC
Q 021295 81 GDVQEHQIMRDHSTSRSRGFGFITFDT 107 (314)
Q Consensus 81 G~v~~v~i~~~~~~g~~rG~afV~F~~ 107 (314)
-+|++|+|.+-...++.++||-|+|++
T Consensus 4 M~ITdVri~~i~~~gklkA~aSVt~dd 30 (100)
T 2ia9_A 4 MEVTDVRLRRVNTDGRMRAIASITLDH 30 (100)
T ss_dssp CCEEEEEEEECCSSSSEEEEEEEEETT
T ss_pred cEEEEEEEEEcCCCCCEEEEEEEEECC
Confidence 368899998877778999999999976
No 414
>3lpe_A Putative transcription antitermination protein NU; transcription regulation, SPT4, SPT5, NUSG, archaea, evoluti directed RNA polymerase; 1.90A {Methanocaldococcus jannaschii} PDB: 3ewg_A
Probab=49.51 E-value=36 Score=24.01 Aligned_cols=21 Identities=19% Similarity=0.370 Sum_probs=13.5
Q ss_pred cccEEEEEECCHHHHHHHHHc
Q 021295 9 PRGFGFVTYADPSVVDKVIED 29 (314)
Q Consensus 9 ~kG~aFV~f~~~~~a~~A~~~ 29 (314)
.+||-||++...+++..++++
T Consensus 49 fPGYVfVe~~~~~~~~~~I~~ 69 (92)
T 3lpe_A 49 LKGYVLVEAETKGDVEELIKG 69 (92)
T ss_dssp STTEEEEEESSHHHHHHHHTT
T ss_pred cCCEEEEEEecchhHHHHHHC
Confidence 566777777666666666653
No 415
>2ofg_X Zinc-transporting ATPase; ferredoxin-like fold, beta-alpha-beta-BETA-alpha-beta, struc genomics, hydrolase, membrane protein; NMR {Synechocystis SP} PDB: 2ofh_X
Probab=48.74 E-value=70 Score=22.80 Aligned_cols=57 Identities=19% Similarity=0.286 Sum_probs=40.8
Q ss_pred cceEEEcCCCCCCCHHHHHHHHhccCCeEEEEEeecCCCCCcceEEEEEeCC----hHHHHHHHHhc
Q 021295 56 TKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDT----EQAVDDLLAKG 118 (314)
Q Consensus 56 ~~~l~V~nLp~~~~e~~l~~~F~~~G~v~~v~i~~~~~~g~~rG~afV~F~~----~~~a~~a~~~l 118 (314)
..+|.|.++.-......|++.+.+.--|..+.+-.. ...+.|+|+. .+++.++|+.+
T Consensus 9 ~~~l~v~Gm~C~~Ca~~Ie~~L~~~~GV~~v~v~~~------~~~~~V~~~~~~~~~~~i~~~i~~~ 69 (111)
T 2ofg_X 9 TQQMQVGGMDCTSCKLKIEGSLERLKGVAEASVTVA------TGRLTVTYDPKQVSEITIQERIAAL 69 (111)
T ss_dssp EEEEEESCCCGGGTHHHHHHHHTTSSSEEEEEEETT------TTEEEEEECTTTCSHHHHHHHHHTT
T ss_pred EEEEEECCcCCHHHHHHHHHHHHcCCCeeEEEEECC------CCEEEEEECCCCCCHHHHHHHHHHc
Confidence 346778888777778889999998877888777543 2368888874 35556666653
No 416
>1ip9_A BEM1 protein; ubiquitin alpha/beta roll, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 1ipg_A 2kfk_A
Probab=47.33 E-value=27 Score=24.45 Aligned_cols=60 Identities=13% Similarity=0.174 Sum_probs=39.1
Q ss_pred eEEEcCCCCCCCHHHHHHHHhccCCeEEEEEeecCCCCCcceEEEEEeCChHHHHHHHHhcCCee
Q 021295 58 KIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLE 122 (314)
Q Consensus 58 ~l~V~nLp~~~~e~~l~~~F~~~G~v~~v~i~~~~~~g~~rG~afV~F~~~~~a~~a~~~l~~~~ 122 (314)
-||+--||.+++-++|++-+..-=++.++.++.-... +.+. +..+-++++.||+.-.++.
T Consensus 22 DIiAIrvP~di~~~~L~dKi~~RLk~~~~~l~~ykde--~~g~---~i~sD~dl~~aiqrn~KL~ 81 (85)
T 1ip9_A 22 DIFALMLKGDTTYKELRSKIAPRIDTDNFKLQTKLFD--GSGE---EIKTDSQVSNIIQAKLKIS 81 (85)
T ss_dssp CCEEEEECSCCCHHHHHHHHHHHHTSSCEEEEECCSS--SCCS---CCCSHHHHHHHHHTTCCEE
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhcccceEEEEecCC--CCCC---cccCHHHHHHHHHhcCeeE
Confidence 4788899999999999976653323333333332211 2223 8889999999999744443
No 417
>2i9z_A Putative septation protein spovg; APC86317, staphylococcus epidermidis ATCC 12228, STRU genomics, PSI-2, protein structure initiative; 2.30A {Staphylococcus epidermidis} SCOP: d.366.1.1
Probab=47.32 E-value=23 Score=25.96 Aligned_cols=26 Identities=19% Similarity=0.318 Sum_probs=22.3
Q ss_pred CeEEEEEeecCCCCCcceEEEEEeCC
Q 021295 82 DVQEHQIMRDHSTSRSRGFGFITFDT 107 (314)
Q Consensus 82 ~v~~v~i~~~~~~g~~rG~afV~F~~ 107 (314)
+|++|+|.+-...++.++||-|+|++
T Consensus 5 ~iTdVri~~i~~~gklkA~aSVt~dd 30 (105)
T 2i9z_A 5 KVTDVRLRKIQTDGRMKALVSITLDE 30 (105)
T ss_dssp CEEEEEEEECCSCSSEEEEEEEEETT
T ss_pred EEEEEEEEEeCCCCCEEEEEEEEECC
Confidence 68888888777778899999999976
No 418
>4a4j_A Pacszia, cation-transporting ATPase PACS; hydrolase, copper homeostasis, zinc homeostasis, ATX1, metal-transporting atpases; 1.25A {Synechocystis} PDB: 4a48_A 2gcf_A 2xmw_A
Probab=46.56 E-value=27 Score=22.15 Aligned_cols=55 Identities=11% Similarity=0.174 Sum_probs=38.4
Q ss_pred ceEEEcCCCCCCCHHHHHHHHhccCCeEEEEEeecCCCCCcceEEEEEeCC---hHHHHHHHHh
Q 021295 57 KKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDT---EQAVDDLLAK 117 (314)
Q Consensus 57 ~~l~V~nLp~~~~e~~l~~~F~~~G~v~~v~i~~~~~~g~~rG~afV~F~~---~~~a~~a~~~ 117 (314)
.+|.|.++.-..-...|++.+.+.--|..+.+-... .-+.|+|++ .+++.++|+.
T Consensus 4 ~~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~~------~~~~v~~~~~~~~~~i~~~i~~ 61 (69)
T 4a4j_A 4 INLQLEGMDCTSCASSIERAIAKVPGVQSCQVNFAL------EQAVVSYHGETTPQILTDAVER 61 (69)
T ss_dssp EEEEEESCCSHHHHHHHHHHHHTSTTEEEEEEETTT------TEEEEEECTTCCHHHHHHHHHH
T ss_pred EEEEECCeecHHHHHHHHHHHhcCCCeEEEEEEecC------CEEEEEECCCCCHHHHHHHHHH
Confidence 456777777666778899999988778888776442 257888743 4556666665
No 419
>2l3m_A Copper-ION-binding protein; structural genomics, center for structural genomics of infec diseases, csgid, metal binding protein; NMR {Bacillus anthracis}
Probab=45.12 E-value=52 Score=20.44 Aligned_cols=55 Identities=11% Similarity=0.183 Sum_probs=36.8
Q ss_pred ceEEEcCCCCCCCHHHHHHHHhccCCeEEEEEeecCCCCCcceEEEEEeCC----hHHHHHHHHh
Q 021295 57 KKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDT----EQAVDDLLAK 117 (314)
Q Consensus 57 ~~l~V~nLp~~~~e~~l~~~F~~~G~v~~v~i~~~~~~g~~rG~afV~F~~----~~~a~~a~~~ 117 (314)
.+|.|.++.-..-...|++.+.+.--|..+.+-.. ...+.|+|+. .+.+.++|+.
T Consensus 7 ~~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~------~~~~~v~~~~~~~~~~~i~~~i~~ 65 (71)
T 2l3m_A 7 LTLQVEGMSCGHCVNAIESSVKELNGVEQVKVQLA------EGTVEVTIDSSVVTLKDIVAVIED 65 (71)
T ss_dssp EEEEEECCCSHHHHHHHHHHHHTSTTEEEEEEETT------TTEEEEEEETTTSCHHHHHHHHHH
T ss_pred EEEEECCccCHHHHHHHHHHHHcCCCeEEEEEEec------CCEEEEEECCCCCCHHHHHHHHHH
Confidence 35677777655556778888988877877777543 2367888763 3555666665
No 420
>1yg0_A COP associated protein; open-faced beta-sandwich, missing C-terminal beta-sheet, Met transport; NMR {Helicobacter pylori}
Probab=45.01 E-value=49 Score=20.10 Aligned_cols=54 Identities=15% Similarity=0.223 Sum_probs=34.5
Q ss_pred eEEEcCCCCCCCHHHHHHHHhccCCeEEEEEeecCCCCCcceEEEEEeCC---hHHHHHHHHh
Q 021295 58 KIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDT---EQAVDDLLAK 117 (314)
Q Consensus 58 ~l~V~nLp~~~~e~~l~~~F~~~G~v~~v~i~~~~~~g~~rG~afV~F~~---~~~a~~a~~~ 117 (314)
+|.|.++.-..-...|++.+.+.--|..+.+-.. ...+.|+++. .+.+.++|+.
T Consensus 4 ~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~------~~~~~v~~~~~~~~~~i~~~i~~ 60 (66)
T 1yg0_A 4 TFQVPSITCNHCVDKIEKFVGEIEGVSFIDVSVE------KKSVVVEFDAPATQDLIKEALLD 60 (66)
T ss_dssp EECCTTCSCSHHHHHHHHHHTTSSSEEEEEEETT------TTEEEEEECTTCCHHHHHHHHHH
T ss_pred EEEECCcccHHHHHHHHHHHhcCCCceEEEEEcC------CCEEEEEECCCCCHHHHHHHHHH
Confidence 3445555554556778889988877877777543 2367788863 4555566654
No 421
>1mli_A Muconolactone isomerase; intramolecular oxidoreductase; 3.30A {Pseudomonas putida} SCOP: d.58.4.1
Probab=44.88 E-value=83 Score=22.53 Aligned_cols=65 Identities=11% Similarity=0.169 Sum_probs=44.6
Q ss_pred cCCCCCCCHHHHHHH----------HhccCCeEEEEEeecCCCCCcceEEEEEeCChHHHHHHHHhcCCeeeCCeEEEEe
Q 021295 62 GGIPSSVNEDEFKDF----------FMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVK 131 (314)
Q Consensus 62 ~nLp~~~~e~~l~~~----------F~~~G~v~~v~i~~~~~~g~~rG~afV~F~~~~~a~~a~~~l~~~~~~gr~l~V~ 131 (314)
-+||.+++.+++.++ +.+-|++..++-+. ++-..++++.-+|++++.+.|..|.-+.. ..|+|.
T Consensus 9 V~~P~~~~~~~~~~~~a~Eka~a~eLq~~G~~~~lWRv~----G~y~nisIfdv~s~~eLh~iL~~LPLfpy--m~i~Vt 82 (96)
T 1mli_A 9 VKLPVDMDPAKATQLKADEKELAQRLQREGTWRHLWRIA----GHYANYSVFDVPSVEALHDTLMQLPLFPY--MDIEVD 82 (96)
T ss_pred eeCCCCCCHHHHHHHHHHHHHHHHHHHhCCeeEEEEEec----CCccEEEEEEcCCHHHHHHHHHhCCCCce--EEEEEE
Confidence 367778777665433 34558888887763 45566888899999999999887654332 255555
Q ss_pred e
Q 021295 132 K 132 (314)
Q Consensus 132 ~ 132 (314)
.
T Consensus 83 p 83 (96)
T 1mli_A 83 G 83 (96)
T ss_pred E
Confidence 4
No 422
>3ftd_A Dimethyladenosine transferase; KSGA, rossmann-like fold, RNA methyltransferase, mtase, anti resistance, methyltransferase, RNA-binding; 1.44A {Aquifex aeolicus} PDB: 3ftc_A 3fte_A 3ftf_A* 3r9x_B*
Probab=43.43 E-value=47 Score=27.99 Aligned_cols=32 Identities=16% Similarity=0.096 Sum_probs=24.2
Q ss_pred ceEEEcCCCCCCCHHHHHHHHhccCCeEEEEE
Q 021295 57 KKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQI 88 (314)
Q Consensus 57 ~~l~V~nLp~~~~e~~l~~~F~~~G~v~~v~i 88 (314)
..+.|.|||+.++...|.++++..-.+..+.+
T Consensus 96 ~~~vv~NlPy~i~~~il~~ll~~~~~~~~~~~ 127 (249)
T 3ftd_A 96 ELKVVGNLPYNVASLIIENTVYNKDCVPLAVF 127 (249)
T ss_dssp SEEEEEECCTTTHHHHHHHHHHTGGGCSEEEE
T ss_pred CcEEEEECchhccHHHHHHHHhcCCCCceEEE
Confidence 45889999999999999999886544444433
No 423
>1kvi_A Copper-transporting ATPase 1; menkes, Cu-protein, hydrolase; NMR {Homo sapiens} SCOP: d.58.17.1 PDB: 1kvj_A
Probab=42.76 E-value=65 Score=20.66 Aligned_cols=58 Identities=10% Similarity=0.142 Sum_probs=41.0
Q ss_pred CcceEEEcCCCCCCCHHHHHHHHhccCCeEEEEEeecCCCCCcceEEEEEeCC----hHHHHHHHHhc
Q 021295 55 KTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDT----EQAVDDLLAKG 118 (314)
Q Consensus 55 ~~~~l~V~nLp~~~~e~~l~~~F~~~G~v~~v~i~~~~~~g~~rG~afV~F~~----~~~a~~a~~~l 118 (314)
...+|.|.++.-..-...|++.+.+.--|..+.+-.. ...+.|+|+. .+.+.++|+.+
T Consensus 8 ~~~~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~------~~~~~v~~~~~~~~~~~i~~~i~~~ 69 (79)
T 1kvi_A 8 NSVTISVEGMTCNSCVWTIEQQIGKVNGVHHIKVSLE------EKNATIIYDPKLQTPKTLQEAIDDM 69 (79)
T ss_dssp EEEEEEECCCCSTTTHHHHHHHHHHSSSCCCEEEEGG------GTEEEEEECTTTCCHHHHHHHHHHH
T ss_pred EEEEEEECCccCHHHHHHHHHHHhcCCCeEEEEEEcc------CCEEEEEECCCCCCHHHHHHHHHHC
Confidence 3456788888887788889999998877777766543 2367888864 35566666653
No 424
>3tqs_A Ribosomal RNA small subunit methyltransferase A; protein synthesis; 1.98A {Coxiella burnetii} SCOP: c.66.1.0
Probab=42.51 E-value=30 Score=29.45 Aligned_cols=32 Identities=19% Similarity=0.358 Sum_probs=25.1
Q ss_pred eEEEcCCCCCCCHHHHHHHHhccCCeEEEEEe
Q 021295 58 KIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIM 89 (314)
Q Consensus 58 ~l~V~nLp~~~~e~~l~~~F~~~G~v~~v~i~ 89 (314)
-..|.|||+.++.+.|.++++....+..+.++
T Consensus 98 ~~vv~NlPY~is~~il~~ll~~~~~~~~~~lm 129 (255)
T 3tqs_A 98 LRVVGNLPYNISTPLLFHLFSQIHCIEDMHFM 129 (255)
T ss_dssp EEEEEECCHHHHHHHHHHHHHTGGGEEEEEEE
T ss_pred eEEEecCCcccCHHHHHHHHhCCCChheEEEE
Confidence 34899999999999999999876556555544
No 425
>2w7a_A LINE-1 ORF1P; RNA-binding protein; HET: MSE; 1.40A {Homo sapiens}
Probab=41.99 E-value=83 Score=22.70 Aligned_cols=75 Identities=16% Similarity=0.277 Sum_probs=40.4
Q ss_pred ceEEEcCCCCCCCHHH--HHHHHh----c-c------C--CeEEEEEeecCCC---CCcceEEEEEeCChH---HHHHHH
Q 021295 57 KKIFVGGIPSSVNEDE--FKDFFM----Q-F------G--DVQEHQIMRDHST---SRSRGFGFITFDTEQ---AVDDLL 115 (314)
Q Consensus 57 ~~l~V~nLp~~~~e~~--l~~~F~----~-~------G--~v~~v~i~~~~~~---g~~rG~afV~F~~~~---~a~~a~ 115 (314)
+.|.|-+||+...+.. +..+|+ + | . +|.++.-.....+ ..++ ..+|.|.... .+.+|.
T Consensus 4 ~NirIiGvPE~e~~k~~~~e~lf~eIi~enfPnL~ke~~i~v~ea~Rsp~~~~~kr~tPR-hIIvK~~~~~~KErILkaa 82 (100)
T 2w7a_A 4 GNLRLIGVPESDVENGTKLENTLQDIIQENFPNLARQANVQIQEIQRTPQRYSSRRATPR-HIIVRFTKVEMKEKMLRAA 82 (100)
T ss_dssp TEEEEECCCCCTTCCHHHHHHHHHHHHHHHCHHHHHHTCCCEEEEEEESSSCCSSCCSCC-EEEEEESCHHHHHHHHHHH
T ss_pred cceeEEeCCCCccccchhHHHHHHHHHHHHCcCcccchhhhhhhhhcCCCccCCCCCCCC-eEEEEecccccHHHHHHHH
Confidence 5688889998733222 333332 2 2 1 3444443322211 1223 4677776654 444444
Q ss_pred HhcCCeeeCCeEEEEee
Q 021295 116 AKGNKLELAGAQVEVKK 132 (314)
Q Consensus 116 ~~l~~~~~~gr~l~V~~ 132 (314)
.....+...+.+|.+..
T Consensus 83 r~k~~vtykg~pirlsa 99 (100)
T 2w7a_A 83 REKGRVTLKGKPIRLTV 99 (100)
T ss_dssp HHHCCEEETTEEEEEEE
T ss_pred HHhCceeeCCcceeecC
Confidence 44467889999998853
No 426
>3bde_A MLL5499 protein; stress responsive A/B barrel domain, structural genomics, JO center for structural genomics, JCSG; 1.79A {Mesorhizobium loti}
Probab=41.66 E-value=70 Score=23.70 Aligned_cols=57 Identities=19% Similarity=0.229 Sum_probs=33.6
Q ss_pred ceEEEcCCCCCCCHHHHHHHH-------hccCCeEEEEEeecCCCCCcceEE-EEEeCChHHHHH
Q 021295 57 KKIFVGGIPSSVNEDEFKDFF-------MQFGDVQEHQIMRDHSTSRSRGFG-FITFDTEQAVDD 113 (314)
Q Consensus 57 ~~l~V~nLp~~~~e~~l~~~F-------~~~G~v~~v~i~~~~~~g~~rG~a-fV~F~~~~~a~~ 113 (314)
+.|.+-.|...+++++++++. .+.-.|+.+.+-++......--++ +++|+|.++.+.
T Consensus 22 ~HIVlfklK~~~~~e~~~~~~~~l~~L~~~Ip~I~~~~vG~~~~~~~~~d~~l~~~F~s~edl~~ 86 (120)
T 3bde_A 22 RHTVVFTLKHASHSLEEKRFLVDAKKILSAIRGVTHFEQLRQISPKIDYHFGFSMEFADQAAYTR 86 (120)
T ss_dssp EEEEEEEESSCTTCHHHHHHHHHHHHHHHTSTTCEEEEEEECCCSSSCCCEEEEEEESSHHHHHH
T ss_pred EEEEEEEECCCCCHHHHHHHHHHHHHhhccCCceEEEEEccCCCCCCCccEEEEEEECCHHHHHH
Confidence 344455677777666655444 345668888877764331112234 568999887754
No 427
>2cfx_A HTH-type transcriptional regulator LRPC; transcriptional regulation, DNA binding, FFRP; 2.4A {Bacillus subtilis} SCOP: a.4.5.32 d.58.4.2
Probab=41.18 E-value=1.1e+02 Score=22.91 Aligned_cols=53 Identities=13% Similarity=0.225 Sum_probs=40.6
Q ss_pred CCCCCCCHHHHHHHHhccCCeEEEEEeecCCCCCcceEEEEEeCChHHHHHHHHhcCC
Q 021295 63 GIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNK 120 (314)
Q Consensus 63 nLp~~~~e~~l~~~F~~~G~v~~v~i~~~~~~g~~rG~afV~F~~~~~a~~a~~~l~~ 120 (314)
.++.. ..+++.+.+.++-+|..+..+.. ...-++.|.+.+.+++++.++++..
T Consensus 72 ~~~~~-~~~~~~~~l~~~p~V~~~~~~tG----~~d~~~~v~~~~~~~l~~~~~~l~~ 124 (144)
T 2cfx_A 72 TVKNA-DYERFKSYIQTLPNIEFCYRIAG----AACYMLKINAESLEAVEDFINKTSP 124 (144)
T ss_dssp EEGGG-CHHHHHHHHHTCTTEEEEEEEES----SSSEEEEEEESSHHHHHHHHHHHTT
T ss_pred EECcc-cHHHHHHHHhcChhhheeeeeeC----CCCEEEEEEECCHHHHHHHHHHhcC
Confidence 34433 26788888999999999887653 3445788999999999999988765
No 428
>3bn7_A Ferredoxin-like protein; stress responsive A/B barre structural genomics, joint center for structural genomics; HET: MSE; 1.64A {Caulobacter crescentus}
Probab=40.37 E-value=69 Score=23.70 Aligned_cols=57 Identities=5% Similarity=0.070 Sum_probs=34.9
Q ss_pred ceEEEcCCCCCCCHHHHHHHHhc------cCCeEEEEEeecCCC----CCcceE--E-EEEeCChHHHHH
Q 021295 57 KKIFVGGIPSSVNEDEFKDFFMQ------FGDVQEHQIMRDHST----SRSRGF--G-FITFDTEQAVDD 113 (314)
Q Consensus 57 ~~l~V~nLp~~~~e~~l~~~F~~------~G~v~~v~i~~~~~~----g~~rG~--a-fV~F~~~~~a~~ 113 (314)
+-|.+-.|...+++++++++.+. .-.|+.+.+-.+..+ ...++| + +++|++.++.+.
T Consensus 22 ~HIVlfklK~~~~~~~~~~~~~~l~~L~~Ip~i~~~~vG~~~s~e~R~~~~~g~d~~l~~~F~s~edl~~ 91 (120)
T 3bn7_A 22 FHQVFFWLKNPGDKADRDKLIAGLKALKAIDVIQQLHVGVPAATEKRDVVDNSYDVSELMVFKSVEDQKR 91 (120)
T ss_dssp EEEEEEEESSTTCHHHHHHHHHHHHGGGGSTTCSEEEEECCCCCCCCTTCCCCCSEEEEEEESSHHHHHH
T ss_pred EEEEEEEECCCCCHHHHHHHHHHHHhccCCCCeEEEEEccCCCcccccccCCCccEEEEEEECCHHHHHH
Confidence 44555577788888776555432 345667777766443 223444 3 468999887654
No 429
>1q8l_A Copper-transporting ATPase 1; metal binding protein; NMR {Homo sapiens} SCOP: d.58.17.1 PDB: 1s6o_A 1s6u_A
Probab=40.35 E-value=77 Score=20.84 Aligned_cols=57 Identities=12% Similarity=0.131 Sum_probs=40.2
Q ss_pred cceEEEcCCCCCCCHHHHHHHHhccCCeEEEEEeecCCCCCcceEEEEEeCC----hHHHHHHHHhc
Q 021295 56 TKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDT----EQAVDDLLAKG 118 (314)
Q Consensus 56 ~~~l~V~nLp~~~~e~~l~~~F~~~G~v~~v~i~~~~~~g~~rG~afV~F~~----~~~a~~a~~~l 118 (314)
..+|.|.++.-......|++.+.+.--|..+.+-.. ...+.|+|+. .+.+.++|+.+
T Consensus 10 ~~~~~v~gm~C~~C~~~ie~~l~~~~GV~~~~v~~~------~~~~~v~~~~~~~~~~~i~~~i~~~ 70 (84)
T 1q8l_A 10 VLKMKVEGMTCHSCTSTIEGKIGKLQGVQRIKVSLD------NQEATIVYQPHLISVEEMKKQIEAM 70 (84)
T ss_dssp EEEEEECCTTTCSSCHHHHHHHHTCTTEEEEEECST------TTEEEEEECTTTCCHHHHHHHHHHT
T ss_pred EEEEEECCcccHHHHHHHHHHHHcCCCeEEEEEEec------CCEEEEEECCCCCCHHHHHHHHHHc
Confidence 346778888777677889999998877888777543 2368888853 45566666653
No 430
>2npt_B Mitogen-activated protein kinase kinase kinase 2; MAP2K5, MEK5, MKK PRKMK5, MAP kinase kinase 5, PHOX, PHOX-domain; 1.75A {Homo sapiens} SCOP: d.15.2.2
Probab=39.61 E-value=54 Score=23.42 Aligned_cols=50 Identities=14% Similarity=0.274 Sum_probs=38.5
Q ss_pred CCCCCCCHHHHHHHH-hccCCeEEEEEeecCCCCCcceEEEEEeCChHHHHHHHHhcCC
Q 021295 63 GIPSSVNEDEFKDFF-MQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNK 120 (314)
Q Consensus 63 nLp~~~~e~~l~~~F-~~~G~v~~v~i~~~~~~g~~rG~afV~F~~~~~a~~a~~~l~~ 120 (314)
-++.-+.-+||.... ..||...++..+.+ .-.|-..+.+++++||+.|+.
T Consensus 35 ~f~RPv~f~el~~kv~~afGq~ldl~y~nn--------EL~iPL~~Q~DLDkAvelLDr 85 (100)
T 2npt_B 35 QFPRPVKLEDLRSKAKIAFGQSMDLHYTNN--------ELVIPLTTQDDLDKAVELLDR 85 (100)
T ss_dssp EECSSCCHHHHHHHHHHHHTSCEEEEEEET--------TEEEECCCHHHHHHHHHHHHH
T ss_pred ecCCCccHHHHHHHHHHHhCCeeeeEEecc--------eeEEecccHHHHHHHHHHhcc
Confidence 456677778887665 57888888887754 367889999999999998643
No 431
>3uzu_A Ribosomal RNA small subunit methyltransferase A; ssgcid, seattle structural genomics center for infectio disease; 1.75A {Burkholderia pseudomallei}
Probab=39.48 E-value=17 Score=31.49 Aligned_cols=33 Identities=12% Similarity=0.210 Sum_probs=25.6
Q ss_pred ceEEEcCCCCCCCHHHHHHHHhccCCeEEEEEe
Q 021295 57 KKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIM 89 (314)
Q Consensus 57 ~~l~V~nLp~~~~e~~l~~~F~~~G~v~~v~i~ 89 (314)
..+.|.|||+.++...|.++++....++.+.++
T Consensus 115 ~~~vv~NlPY~iss~il~~ll~~~~~~~~~~~m 147 (279)
T 3uzu_A 115 SLRIIGNLPYNISSPLLFHLMSFAPVVIDQHFM 147 (279)
T ss_dssp CEEEEEECCHHHHHHHHHHHGGGGGGEEEEEEE
T ss_pred ceEEEEccCccccHHHHHHHHhccCCccEEEEE
Confidence 457899999999999999999765455555444
No 432
>2xmw_A PACS-N, cation-transporting ATPase PACS; hydrolase, Cu(I)-binding, trafficking; 1.80A {Synechocystis SP} PDB: 2gcf_A
Probab=38.24 E-value=69 Score=19.71 Aligned_cols=55 Identities=11% Similarity=0.175 Sum_probs=36.1
Q ss_pred ceEEEcCCCCCCCHHHHHHHHhccCCeEEEEEeecCCCCCcceEEEEEeCC---hHHHHHHHHh
Q 021295 57 KKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDT---EQAVDDLLAK 117 (314)
Q Consensus 57 ~~l~V~nLp~~~~e~~l~~~F~~~G~v~~v~i~~~~~~g~~rG~afV~F~~---~~~a~~a~~~ 117 (314)
.+|.|.++.-......|++.+.+.--|..+.+-.. ...+.|+|+. .+.+.++|+.
T Consensus 5 ~~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~------~~~~~v~~~~~~~~~~i~~~i~~ 62 (71)
T 2xmw_A 5 INLQLEGMRCAACASSIERAIAKVPGVQSCQVNFA------LEQAVVSYHGETTPQILTDAVER 62 (71)
T ss_dssp EEEEEECCCSHHHHHHHHHHHHTSTTEEEEEEETT------TTEEEEEEC---CHHHHHHHHHH
T ss_pred EEEEECCcccHHHHHHHHHHHhcCCCeEEEEEEcc------CCEEEEEECCCCCHHHHHHHHHH
Confidence 35667777655556778899988877888777543 2367888864 3445555554
No 433
>1vq8_S 50S ribosomal protein L23P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: d.12.1.1 PDB: 1vq4_S* 1vq5_S* 1vq6_S* 1vq7_S* 1s72_S* 1vq9_S* 1vqk_S* 1vql_S* 1vqm_S* 1vqn_S* 1vqo_S* 1vqp_S* 1yhq_S* 1yi2_S* 1yij_S* 1yit_S* 1yj9_S* 1yjn_S* 1yjw_S* 2otj_S* ...
Probab=37.74 E-value=38 Score=23.74 Aligned_cols=54 Identities=6% Similarity=0.115 Sum_probs=35.6
Q ss_pred EEcCCCCCCCHHHHHHHHhcc-C-CeEEEEEeecCCCCCcceEEEEEeCChHHHHHHHH
Q 021295 60 FVGGIPSSVNEDEFKDFFMQF-G-DVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLA 116 (314)
Q Consensus 60 ~V~nLp~~~~e~~l~~~F~~~-G-~v~~v~i~~~~~~g~~rG~afV~F~~~~~a~~a~~ 116 (314)
|+-.++..++..+|++.++++ + +|+.|..+..+. ..--|+|++...++|.....
T Consensus 25 ~~F~V~~~AnK~qIK~ave~lf~VkV~~VNT~~~~~---~~KKA~VtL~~g~~aid~~~ 80 (85)
T 1vq8_S 25 LQFAVDDRASKGEVADAVEEQYDVTVEQVNTQNTMD---GEKKAVVRLSEDDDAQEVAS 80 (85)
T ss_dssp EEEEECTTCCHHHHHHHHHHHHCCCEEEEEEEECTT---SSEEEEEEECTTSCHHHHHT
T ss_pred EEEEECCCCCHHHHHHHHHHHhCCCceEEEeeecCC---CceEEEEEECCCCcHHHHHH
Confidence 344467788999999888764 3 566776665432 12359999988776544443
No 434
>2yko_A LINE-1 ORF1P; RNA-binding protein, genome evolution, nucleic acid chaperon coiled-coil; HET: MSE; 2.10A {Homo sapiens} PDB: 2ykp_A 2ykq_A 2ldy_A
Probab=37.40 E-value=1.4e+02 Score=24.95 Aligned_cols=77 Identities=17% Similarity=0.253 Sum_probs=44.1
Q ss_pred CcceEEEcCCCCCCC--HHHHHHHHhc-----cCC--------eEEEEEee-----cCCCCCcceEEEEEeCChH---HH
Q 021295 55 KTKKIFVGGIPSSVN--EDEFKDFFMQ-----FGD--------VQEHQIMR-----DHSTSRSRGFGFITFDTEQ---AV 111 (314)
Q Consensus 55 ~~~~l~V~nLp~~~~--e~~l~~~F~~-----~G~--------v~~v~i~~-----~~~~g~~rG~afV~F~~~~---~a 111 (314)
..+.|.|-+||.... +..+..+|++ |.. |.++.-.. .+.| ++ ..+|.|.... .+
T Consensus 51 Rr~NIRIiGVPEgee~~~kgaenlf~eII~EnfPnL~ke~diqV~ea~Rsp~~~~~kr~t--PR-~IIvK~~~~~~KErI 127 (233)
T 2yko_A 51 KRPNLRLIGVPESDVENGTKLENTLQDIIQENFPNLARQANVQIQEIQRTPQRYSSRRAT--PR-HIIVRFTKVEMKEKM 127 (233)
T ss_dssp TTTEEEEESCCCCTTCCHHHHHHHHHHHHHHHCTTCC---CCCEEEEEEC-------CCS--CC-CEEEEESSHHHHHHH
T ss_pred cccceeEeecCCCcccccccHHHHHHHHHHHhCCCCccccceeeechhcCCCCCCCCCCC--CC-eEEEEecccccHHHH
Confidence 456799999999876 4445444443 332 23332111 1222 33 4566776654 44
Q ss_pred HHHHHhcCCeeeCCeEEEEeecC
Q 021295 112 DDLLAKGNKLELAGAQVEVKKAE 134 (314)
Q Consensus 112 ~~a~~~l~~~~~~gr~l~V~~a~ 134 (314)
.+|......+...+.+|.+....
T Consensus 128 LkaaR~k~~vtykG~pIrlsaDf 150 (233)
T 2yko_A 128 LRAAREKGRVTLKGKPIRLTVDL 150 (233)
T ss_dssp HHHHHTTSCEEETTEEEEEEECC
T ss_pred HHHHHHhcccccCCCceEEeCCC
Confidence 44544556788999999886543
No 435
>1cpz_A Protein (COPZ); copper chaperone, metal transport, gene regulation; NMR {Enterococcus hirae} SCOP: d.58.17.1
Probab=37.38 E-value=70 Score=19.48 Aligned_cols=54 Identities=9% Similarity=0.200 Sum_probs=37.6
Q ss_pred eEEEcCCCCCCCHHHHHHHHhccCCeEEEEEeecCCCCCcceEEEEEeCC----hHHHHHHHHh
Q 021295 58 KIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDT----EQAVDDLLAK 117 (314)
Q Consensus 58 ~l~V~nLp~~~~e~~l~~~F~~~G~v~~v~i~~~~~~g~~rG~afV~F~~----~~~a~~a~~~ 117 (314)
++.|.++.-..-...|++.+.+.-.|..+.+-.. ...+.|+|+. .+.+.++++.
T Consensus 3 ~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~------~~~~~v~~~~~~~~~~~i~~~i~~ 60 (68)
T 1cpz_A 3 EFSVKGMSCNHCVARIEEAVGRISGVKKVKVQLK------KEKAVVKFDEANVQATEICQAINE 60 (68)
T ss_dssp EEEESCCCSSSHHHHHHHHHHTSTTEEEEEEETT------TTEEEEEECTTTCCHHHHHHHHHT
T ss_pred EEEECCeeCHHHHHHHHHHHHcCCCeEEEEEEec------CCEEEEEECCCCCCHHHHHHHHHH
Confidence 5677777766677889999998877887777543 2367888864 3455566655
No 436
>2g9o_A Copper-transporting ATPase 1; menkes disease, solution structure, structural genomics, structural proteomics in europe, spine, hydrolase; NMR {Homo sapiens} PDB: 2ga7_A
Probab=37.20 E-value=57 Score=22.14 Aligned_cols=56 Identities=4% Similarity=0.135 Sum_probs=38.2
Q ss_pred ceEEEcCCCCCCCHHHHHHHHhccCCeEEEEEeecCCCCCcceEEEEEeCC----hHHHHHHHHhc
Q 021295 57 KKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDT----EQAVDDLLAKG 118 (314)
Q Consensus 57 ~~l~V~nLp~~~~e~~l~~~F~~~G~v~~v~i~~~~~~g~~rG~afV~F~~----~~~a~~a~~~l 118 (314)
.+|.|.++.-......|++.+.+.--|..+.+-.. ...+.|+|+. .+++.++|+.+
T Consensus 5 ~~l~v~Gm~C~~C~~~Ie~~L~~~~GV~~v~v~l~------~~~~~V~~~~~~~~~~~i~~~i~~~ 64 (90)
T 2g9o_A 5 ATFIIDGMHCKSCVSNIESTLSALQYVSSIVVSLE------NRSAIVVYNASSVTPESLRKAIEAV 64 (90)
T ss_dssp EEEEEESCCHHHHHHHHHHHHTTCTTEEEEEEETT------TTEEEEEECCSSCCTHHHHHHHHTT
T ss_pred EEEEECCcCCHHHHHHHHHHHHcCCCeeEEEEEcc------CCEEEEEECCCCCCHHHHHHHHHhc
Confidence 35667666555556778899988877888777644 2368888863 45666777664
No 437
>2kt2_A Mercuric reductase; nmera, MERA, HMA domain, mercuric resist metal-binding, oxidoreductase; NMR {Pseudomonas aeruginosa} PDB: 2kt3_A
Probab=35.72 E-value=77 Score=19.49 Aligned_cols=54 Identities=13% Similarity=0.180 Sum_probs=36.7
Q ss_pred eEEEcCCCCCCCHHHHHHHHhccCCeEEEEEeecCCCCCcceEEEEEeCC---hHHHHHHHHh
Q 021295 58 KIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDT---EQAVDDLLAK 117 (314)
Q Consensus 58 ~l~V~nLp~~~~e~~l~~~F~~~G~v~~v~i~~~~~~g~~rG~afV~F~~---~~~a~~a~~~ 117 (314)
++.|.++.-..-...|++.+.+.-.|..+.+-.. ...+.|+++. .+.+.++|+.
T Consensus 3 ~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~------~~~~~v~~~~~~~~~~i~~~i~~ 59 (69)
T 2kt2_A 3 HLKITGMTCDSCAAHVKEALEKVPGVQSALVSYP------KGTAQLAIVPGTSPDALTAAVAG 59 (69)
T ss_dssp CEEEESSCSTHHHHHHHHHHHHSTTEEEEEEETT------TTEEEEEECTTSCHHHHHHHHHT
T ss_pred EEEECCcccHHHHHHHHHHHHcCCCeeEEEEEcc------CCEEEEEECCCCCHHHHHHHHHH
Confidence 4667777666566788899988877888777644 2367788864 3455556655
No 438
>2ko1_A CTR148A, GTP pyrophosphokinase; homodimer, alpha+beta, transferase, structural genomics, PSI-2, protein structure initiative; NMR {Chlorobaculum tepidum} PDB: 3ibw_A
Probab=35.49 E-value=97 Score=20.60 Aligned_cols=50 Identities=10% Similarity=0.109 Sum_probs=30.0
Q ss_pred CHHHHHHHHhccC-CeEEEEEeecCCCCCcceEEEEEeCChHHHHHHHHhcCC
Q 021295 69 NEDEFKDFFMQFG-DVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNK 120 (314)
Q Consensus 69 ~e~~l~~~F~~~G-~v~~v~i~~~~~~g~~rG~afV~F~~~~~a~~a~~~l~~ 120 (314)
.-.+|.++|++.+ .|..+.+.... ....-...|+..+.+.+++++++|..
T Consensus 18 ~L~~I~~~la~~~inI~~i~~~~~~--~~~~~~i~v~~~~~~~l~~l~~~L~~ 68 (88)
T 2ko1_A 18 MTNQITGVISKFDTNIRTIVLNAKD--GIFTCNLMIFVKNTDKLTTLMDKLRK 68 (88)
T ss_dssp HHHHHHHHHTTSSSCEEEEEEEECS--SEEEEEEEEEESSHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHCCCCeEEEEEEEcC--CEEEEEEEEEECCHHHHHHHHHHHhc
Confidence 3578888888875 57777765532 11111122345567777888877654
No 439
>1vd2_A Protein kinase C, IOTA type; PB1 domain, OPCA motif, APKC, ZIP/P62, MEK5, molecular recognition, transferase; NMR {Homo sapiens} SCOP: d.15.2.2 PDB: 1wmh_A
Probab=35.42 E-value=64 Score=22.74 Aligned_cols=52 Identities=6% Similarity=0.108 Sum_probs=34.2
Q ss_pred EEEcCCCCCCCHHHHHHHHhc-cC----CeEEEEEeecCCCCCcceEEEEEeCChHHHHHHHHh
Q 021295 59 IFVGGIPSSVNEDEFKDFFMQ-FG----DVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAK 117 (314)
Q Consensus 59 l~V~nLp~~~~e~~l~~~F~~-~G----~v~~v~i~~~~~~g~~rG~afV~F~~~~~a~~a~~~ 117 (314)
|.+-.+|.+++-++|.+.+.. |. +...++.+-+ .+ -+|++.+.++++.|+..
T Consensus 17 i~~~~v~~~i~~~~L~~kv~~~~~~~~~~~f~lky~DE--eG-----D~itisSd~EL~eAl~l 73 (89)
T 1vd2_A 17 IMITHFEPSISFEGLCNEVRDMCSFDNEQLFTMKWIDE--EG-----DPCTVSSQLELEEAFRL 73 (89)
T ss_dssp EEEEEECTTCCHHHHHHHHHHHTTCCSSCCEEEEECCS--SS-----CCEECCSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCCCCeEEEEEECC--CC-----CcccccCHHHHHHHHHH
Confidence 556667889999998876653 32 1123333322 22 37899999999999984
No 440
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=35.18 E-value=47 Score=24.88 Aligned_cols=33 Identities=15% Similarity=0.273 Sum_probs=24.0
Q ss_pred ccEEEEEECCHHHHHHHHH-ccCccC-CcEEEEee
Q 021295 10 RGFGFVTYADPSVVDKVIE-DTHIIN-GKQVEIKR 42 (314)
Q Consensus 10 kG~aFV~f~~~~~a~~A~~-~~~~i~-g~~i~v~~ 42 (314)
.=.-.|.|++..+|++||. +...|. ...|-|++
T Consensus 59 ~NWihI~Y~s~~~A~rAL~kNG~ii~g~~mIGV~p 93 (119)
T 1wwh_A 59 GNWMHIRYQSKLQARKALSKDGRIFGESIMIGVKP 93 (119)
T ss_dssp SSEEEEEESSHHHHHHHHTTTTCEETTTEECEEEE
T ss_pred CCeEEEEeCCHHHHHHHHHhCCeEecCCEEEEEEE
Confidence 3467899999999999999 444554 35555554
No 441
>2l69_A Rossmann 2X3 fold protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Artificial gene}
Probab=34.91 E-value=91 Score=22.15 Aligned_cols=17 Identities=6% Similarity=0.100 Sum_probs=11.6
Q ss_pred EEEEeCChHHHHHHHHh
Q 021295 101 GFITFDTEQAVDDLLAK 117 (314)
Q Consensus 101 afV~F~~~~~a~~a~~~ 117 (314)
..|..++.+-|++||.-
T Consensus 54 vvvvvddkewaekairf 70 (134)
T 2l69_A 54 VVVVVDDKEWAEKAIRF 70 (134)
T ss_dssp EEEECSSHHHHHHHHHH
T ss_pred EEEEEccHHHHHHHHHH
Confidence 34555677888888764
No 442
>1fme_A FSD-EY peptide; beta-BETA-alpha, zinc finger, designed protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1 PDB: 1fsd_A 1fsv_A 2k6r_A* 1psv_A
Probab=33.72 E-value=23 Score=18.47 Aligned_cols=12 Identities=50% Similarity=0.982 Sum_probs=10.5
Q ss_pred CHHHHHHHHhcc
Q 021295 69 NEDEFKDFFMQF 80 (314)
Q Consensus 69 ~e~~l~~~F~~~ 80 (314)
+|.+|+++.++|
T Consensus 14 nekelrdfiekf 25 (28)
T 1fme_A 14 NEKELRDFIEKF 25 (28)
T ss_dssp CHHHHHHHHHHC
T ss_pred cHHHHHHHHHHh
Confidence 688999999887
No 443
>2cvi_A 75AA long hypothetical regulatory protein ASNC; structural genomics, unknown function; 1.50A {Pyrococcus horikoshii} PDB: 2z4p_A 2e1a_A
Probab=33.47 E-value=1.1e+02 Score=20.51 Aligned_cols=44 Identities=16% Similarity=0.227 Sum_probs=36.1
Q ss_pred CHHHHHHHHhccCCeEEEEEeecCCCCCcceEEEEEeCChHHHHHHHH
Q 021295 69 NEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLA 116 (314)
Q Consensus 69 ~e~~l~~~F~~~G~v~~v~i~~~~~~g~~rG~afV~F~~~~~a~~a~~ 116 (314)
+.+++.+.++++-+|.+|..+. +...=.+.|.+.|.++.++.+.
T Consensus 14 ~~~~~~~~l~~~peV~e~~~vt----G~~D~ll~v~~~d~~~l~~~i~ 57 (83)
T 2cvi_A 14 KEREVMEKLLAMPEVKEAYVVY----GEYDLIVKVETDTLKDLDQFIT 57 (83)
T ss_dssp CHHHHHHHHHTSTTEEEEEECB----SSCSEEEEEEESSHHHHHHHHH
T ss_pred CHHHHHHHHhCCCCeeEEEEEc----ccCCEEEEEEECCHHHHHHHHH
Confidence 3578889999999999998864 4445578899999999999886
No 444
>1opz_A Potential copper-transporting ATPase; mutation, folding, abbab fold, hydrolase; NMR {Bacillus subtilis} SCOP: d.58.17.1 PDB: 1oq3_A 1oq6_A
Probab=33.35 E-value=88 Score=19.45 Aligned_cols=56 Identities=11% Similarity=0.178 Sum_probs=38.5
Q ss_pred cceEEEcCCCCCCCHHHHHHHHhccCCeEEEEEeecCCCCCcceEEEEEeCC----hHHHHHHHHh
Q 021295 56 TKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDT----EQAVDDLLAK 117 (314)
Q Consensus 56 ~~~l~V~nLp~~~~e~~l~~~F~~~G~v~~v~i~~~~~~g~~rG~afV~F~~----~~~a~~a~~~ 117 (314)
..+|.|.++.-......|++.+.+.--|..+.+-.. ...+.|+|+. .+++.++|+.
T Consensus 7 ~~~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~------~~~~~v~~~~~~~~~~~i~~~i~~ 66 (76)
T 1opz_A 7 EIAMQVSGMTCAACAARIEKGLKRMPGVTDANVNLA------TETVNVIYDPAETGTAAIQEKIEK 66 (76)
T ss_dssp EEEEEEESCCSTTHHHHHHHHHHTSTTEEEEEEEGG------GTEEEEEECTTTCCHHHHHHHHHH
T ss_pred EEEEEECCcccHHHHHHHHHHHhcCCCeEEEEEEec------CCEEEEEECCCCCCHHHHHHHHHH
Confidence 346778888776667789999988877877776543 2367788853 3455566655
No 445
>3cjk_B Copper-transporting ATPase 1; HAH1, ATP7B, menkes disease, metal homeostasis, chaperone, ION transport, metal- binding, alternative splicing; 1.80A {Homo sapiens} PDB: 2k1r_A
Probab=33.23 E-value=91 Score=19.57 Aligned_cols=55 Identities=11% Similarity=0.146 Sum_probs=36.9
Q ss_pred eEEEcCCCCCCCHHHHHHHHhccCCeEEEEEeecCCCCCcceEEEEEeCC----hHHHHHHHHhc
Q 021295 58 KIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDT----EQAVDDLLAKG 118 (314)
Q Consensus 58 ~l~V~nLp~~~~e~~l~~~F~~~G~v~~v~i~~~~~~g~~rG~afV~F~~----~~~a~~a~~~l 118 (314)
+|.|.++.-......|++.+.+.-.|..+.+-.. ...+.|+|+. .+.+.++|+.+
T Consensus 5 ~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~------~~~~~v~~~~~~~~~~~i~~~i~~~ 63 (75)
T 3cjk_B 5 TISVEGMTCNSCVWTIEQQIGKVNGVHHIKVSLE------EKNATIIYDPKLQTPKTLQEAIDDM 63 (75)
T ss_dssp EEEECCCCSHHHHHHHHHHHHTSTTEEEEEEETT------TTEEEEEECTTTCCHHHHHHHHHHT
T ss_pred EEEECCccCHHHHHHHHHHHhcCCCeEEEEEEec------CCEEEEEECCCCCCHHHHHHHHHHc
Confidence 4666666555556778888988877887777543 2367888864 45566666663
No 446
>3u5e_X 60S ribosomal protein L25; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 2wwa_K 2ww9_K 3izc_X 3izs_X 2wwb_K 3o5h_W 3o58_W 3u5i_X 4b6a_X 1s1i_T 3jyw_T
Probab=33.19 E-value=48 Score=25.61 Aligned_cols=56 Identities=13% Similarity=0.192 Sum_probs=37.2
Q ss_pred EEEcCCCCCCCHHHHHHHHhcc-C-CeEEEEEeecCCCCCcceEEEEEeCChHHHHHHHHh
Q 021295 59 IFVGGIPSSVNEDEFKDFFMQF-G-DVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAK 117 (314)
Q Consensus 59 l~V~nLp~~~~e~~l~~~F~~~-G-~v~~v~i~~~~~~g~~rG~afV~F~~~~~a~~a~~~ 117 (314)
.||--++..++..+|++.++++ . +|+.|..+..+. + .--|+|++....+|.+...+
T Consensus 81 ~~vF~Vd~~AnK~qIK~AVEklf~VkV~kVNTl~~~~-g--~KKAyV~L~~~~daldvAnk 138 (142)
T 3u5e_X 81 ILVFQVSMKANKYQIKKAVKELYEVDVLKVNTLVRPN-G--TKKAYVRLTADYDALDIANR 138 (142)
T ss_dssp EEEEEECTTCCHHHHHHHHHHHHSCCEEEEEEEECTT-S--CEEEEEEECTTCCHHHHHHH
T ss_pred EEEEEEcCCCCHHHHHHHHHHHhCCceeEEEeeEcCC-C--ceEEEEEeCCCCcHHHHHHh
Confidence 4555577889999999888764 3 466676665432 1 22599999887666555443
No 447
>2jrh_A Mitogen-activated protein kinase kinase kinase 3; kinase signaling domain, transferase; NMR {Homo sapiens} PDB: 2pph_A
Probab=33.15 E-value=60 Score=22.87 Aligned_cols=50 Identities=12% Similarity=0.190 Sum_probs=37.2
Q ss_pred CCCCCCCHHHHHHHH-hccCCeEEEEEeecCCCCCcceEEEEEeCChHHHHHHHHhcCC
Q 021295 63 GIPSSVNEDEFKDFF-MQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNK 120 (314)
Q Consensus 63 nLp~~~~e~~l~~~F-~~~G~v~~v~i~~~~~~g~~rG~afV~F~~~~~a~~a~~~l~~ 120 (314)
-++.-+.-+||.... ..||...++..+.+ --.|-..+.+++++|++.|+.
T Consensus 19 ~f~RPvkf~dl~qkv~~afGq~ldl~y~nn--------EL~iPL~~Q~DLDkAvelLDr 69 (94)
T 2jrh_A 19 AFSRPVKYEDVEHKVTTVFGQPLDLHYMNN--------ELSILLKNQDDLDKAIDILDR 69 (94)
T ss_dssp EECSSCCHHHHHHHHHHHHCSSEEEEEECS--------SCEEECCSHHHHHHHHHHHHH
T ss_pred ecCCCccHHHHHHHHHHHhCCeeeeEEecc--------eeEEeccCHHHHHHHHHHhcc
Confidence 456667778887555 56888888877744 257888999999999998643
No 448
>1osd_A MERP, hypothetical protein MERP; mercury resistance, metal binding protein, perisplasm, structural genomics; 2.00A {Cupriavidus metallidurans} SCOP: d.58.17.1 PDB: 1afi_A 1afj_A 2hqi_A
Probab=33.13 E-value=87 Score=19.32 Aligned_cols=55 Identities=18% Similarity=0.200 Sum_probs=37.7
Q ss_pred eEEEcCCCCCCCHHHHHHHHhccCCeEEEEEeecCCCCCcceEEEEEeCC----hHHHHHHHHhc
Q 021295 58 KIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDT----EQAVDDLLAKG 118 (314)
Q Consensus 58 ~l~V~nLp~~~~e~~l~~~F~~~G~v~~v~i~~~~~~g~~rG~afV~F~~----~~~a~~a~~~l 118 (314)
+|.|.++.-......|++.+.+.--|..+.+-.. ...+.|+|+. .+.+.++|+.+
T Consensus 6 ~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~------~~~~~v~~~~~~~~~~~i~~~i~~~ 64 (72)
T 1osd_A 6 TLSVPGMTCSACPITVKKAISKVEGVSKVDVTFE------TRQAVVTFDDAKTSVQKLTKATADA 64 (72)
T ss_dssp EEECTTCCSTTHHHHHHHHHHTSTTEEEEEEETT------TTEEEEEEETTTCCHHHHHHHHHHT
T ss_pred EEEECCeEcHHHHHHHHHHHhcCCCeEEEEEEec------CCEEEEEECCCCCCHHHHHHHHHhc
Confidence 4666677666667788999998877887777543 2367888863 45566666653
No 449
>4a17_R RPL23A, 60S ribosomal protein L21; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_R 4a1c_R 4a1e_R
Probab=32.14 E-value=50 Score=25.78 Aligned_cols=56 Identities=13% Similarity=0.170 Sum_probs=37.1
Q ss_pred EEEcCCCCCCCHHHHHHHHhcc-C-CeEEEEEeecCCCCCcceEEEEEeCChHHHHHHHHh
Q 021295 59 IFVGGIPSSVNEDEFKDFFMQF-G-DVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAK 117 (314)
Q Consensus 59 l~V~nLp~~~~e~~l~~~F~~~-G-~v~~v~i~~~~~~g~~rG~afV~F~~~~~a~~a~~~ 117 (314)
.||--++..++..+|++.++++ . +|+.|..+..+. + .--|||++....+|.+...+
T Consensus 89 ~~vF~Vd~kAnK~qIK~AVEklf~VkV~kVNTl~~p~-g--~KKAyV~La~~~dAldvAnk 146 (150)
T 4a17_R 89 TMVFYVHNRSTKPQIKSAFEKLYNVKVRSVNTLNTIT-G--NKKAYIRLAADSDSLTLANK 146 (150)
T ss_dssp EEEEEECTTCCHHHHHHHHHHHHCCCEEEEEEEECTT-S--CEEEEEEECSSSCHHHHHHH
T ss_pred EEEEEEcCCCCHHHHHHHHHHHhCCceeEEEeeEcCC-C--cEEEEEEcCCCCcHHHHHHh
Confidence 4455577789999999888764 3 466676665432 1 22599999887666655444
No 450
>2crl_A Copper chaperone for superoxide dismutase; SOD1, familial ALS, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=31.94 E-value=97 Score=21.56 Aligned_cols=55 Identities=15% Similarity=0.169 Sum_probs=35.3
Q ss_pred ceEEEcCCCCCCCHHHHHHHHhccCCeEEEEEeecCCCCCcceEEEEEeC-ChHHHHHHHHhc
Q 021295 57 KKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFD-TEQAVDDLLAKG 118 (314)
Q Consensus 57 ~~l~V~nLp~~~~e~~l~~~F~~~G~v~~v~i~~~~~~g~~rG~afV~F~-~~~~a~~a~~~l 118 (314)
.+|.|. +.-..-...|++.+.+.--|..+.|-.. ...+.|++. +.+++.++|+.+
T Consensus 21 ~~l~V~-m~C~~C~~~Ie~aL~~l~GV~~v~vdl~------~~~~~V~~~~~~~~i~~~i~~~ 76 (98)
T 2crl_A 21 LEFAVQ-MTCQSCVDAVRKSLQGVAGVQDVEVHLE------DQMVLVHTTLPSQEVQALLEGT 76 (98)
T ss_dssp EEEEEC-CCSHHHHHHHHHTTTTCTTCCEEEEETT------TTEEEEEESSCHHHHHHHHHTT
T ss_pred EEEEEe-eECHHHHHHHHHHHHcCCCceEEEEECC------CCEEEEEEeCCHHHHHHHHHHh
Confidence 345555 5444445778888888877888777544 235777774 456667777663
No 451
>2op5_A Hypothetical protein; ferredoxin-like protein, structural genomics, joint center F structural genomics, JCSG; 2.20A {Uncultured marine organism} SCOP: d.58.4.22
Probab=31.91 E-value=1.3e+02 Score=20.89 Aligned_cols=46 Identities=9% Similarity=0.112 Sum_probs=27.4
Q ss_pred HHHHHHHhccCCeEEEEEeecCCCCCcceEEEEEeCChHHHHHHHHh
Q 021295 71 DEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAK 117 (314)
Q Consensus 71 ~~l~~~F~~~G~v~~v~i~~~~~~g~~rG~afV~F~~~~~a~~a~~~ 117 (314)
+||..-++..|-|..| |..-.+..+.+=.-..+|++.+-.++|.+.
T Consensus 37 edlysrlsaaglirhv-iskvwnkeqhrismvfeydskegyqkcqei 82 (117)
T 2op5_A 37 EDLYSRLSAAGLIRHV-ISKVWNKEQHRISMVFEYDSKEGYQKCQEI 82 (117)
T ss_dssp HHHHHHHHHHTEEEEE-EEEECCTTCCEEEEEEEESCHHHHHHHHHH
T ss_pred HHHHHHHHHhhHHHHH-HHHHhhhhhceeEEEEEeccHhhHHHHHHH
Confidence 4566666666766544 333333444555556789998877776543
No 452
>2c60_A Human mitogen-activated protein kinase kinase kinase 3 isoform 2; MAP3K3, MAP/ERK kinase kinase 3, MAPKKK3, MEKK3, serine threonine phosphorylation; HET: MSE; 1.25A {Homo sapiens} SCOP: d.15.2.2 PDB: 2o2v_B
Probab=31.70 E-value=55 Score=23.71 Aligned_cols=50 Identities=12% Similarity=0.190 Sum_probs=37.6
Q ss_pred CCCCCCCHHHHHHHH-hccCCeEEEEEeecCCCCCcceEEEEEeCChHHHHHHHHhcCC
Q 021295 63 GIPSSVNEDEFKDFF-MQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNK 120 (314)
Q Consensus 63 nLp~~~~e~~l~~~F-~~~G~v~~v~i~~~~~~g~~rG~afV~F~~~~~a~~a~~~l~~ 120 (314)
-++.-+.-+||.... ..||...++..+.+ .-.|-..+.+++++|++.|+.
T Consensus 46 qf~RPvkf~dl~qkv~~afGq~ldl~y~nn--------EL~IPL~~Q~DLDkAvelLDr 96 (111)
T 2c60_A 46 AFSRPVKYEDVEHKVTTVFGQPLDLHYMNN--------ELSILLKNQDDLDKAIDILDR 96 (111)
T ss_dssp EECSSCCHHHHHHHHHHHHSSCCEEEEECS--------SCEEECCSHHHHHHHHHHHHH
T ss_pred ecCCCccHHHHHHHHHHHhCCeeeeEEecc--------eEEEecccHHHHHHHHHHhcc
Confidence 456677778887655 56788888877744 257888999999999998643
No 453
>3hf5_A 4-methylmuconolactone methylisomerase; ferredoxin, ferredoxin-like fold, beta-barrel, biodegradation, ortho- cleavage; HET: 3ML; 1.40A {Pseudomonas reinekei} SCOP: d.58.4.19 PDB: 3hds_A* 3hfk_A* 2ifx_A*
Probab=31.27 E-value=1.1e+02 Score=22.44 Aligned_cols=22 Identities=18% Similarity=0.234 Sum_probs=17.8
Q ss_pred CcceEEEEEeCChHHHHHHHHh
Q 021295 96 RSRGFGFITFDTEQAVDDLLAK 117 (314)
Q Consensus 96 ~~rG~afV~F~~~~~a~~a~~~ 117 (314)
.-.+++-+-|+|.+++++|+..
T Consensus 69 ~~DgiaElwF~d~ea~~aa~~s 90 (116)
T 3hf5_A 69 RIDAIGECWFASEEQYQVYMES 90 (116)
T ss_dssp CCCEEEEEEESSHHHHHHHHHC
T ss_pred CcCEEEEEEECCHHHHHHHhCC
Confidence 3467899999999998888764
No 454
>1yjr_A Copper-transporting ATPase 1; metallochaperone, protein-protein interaction, copper(I), metal homeostasis, structural proteomics in europe, spine; NMR {Homo sapiens} PDB: 1yjt_A 1yju_A 1yjv_A
Probab=31.26 E-value=97 Score=19.28 Aligned_cols=56 Identities=9% Similarity=0.172 Sum_probs=38.7
Q ss_pred cceEEEcCCCCCCCHHHHHHHHhccCCeEEEEEeecCCCCCcceEEEEEeCCh----HHHHHHHHh
Q 021295 56 TKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTE----QAVDDLLAK 117 (314)
Q Consensus 56 ~~~l~V~nLp~~~~e~~l~~~F~~~G~v~~v~i~~~~~~g~~rG~afV~F~~~----~~a~~a~~~ 117 (314)
..+|.|.++.-......|++.+.+.--|..+.+-.. ...+.|+|+.. +.+.++|+.
T Consensus 5 ~~~~~v~gm~C~~c~~~i~~~l~~~~gv~~~~v~~~------~~~~~v~~~~~~~~~~~i~~~i~~ 64 (75)
T 1yjr_A 5 VLELVVRGMTCASCVHKIESSLTKHRGILYCSVALA------TNKAHIKYDPEIIGPRDIIHTIES 64 (75)
T ss_dssp CEEEEEETCCTTTHHHHHHHHHTTSTTEEEEEEETT------TTEEEEEECTTTTHHHHHHHHHHH
T ss_pred EEEEEECCcccHHHHHHHHHHHHcCCCEEEEEEEec------CCEEEEEECCCCCCHHHHHHHHHH
Confidence 346778888777777889999998877887777543 23678888642 344555554
No 455
>1x8d_A Hypothetical protein YIIL; mutarotase, L-rhamnose, biosynthetic protein; HET: RNS; 1.80A {Escherichia coli} SCOP: d.58.4.21
Probab=30.90 E-value=73 Score=23.06 Aligned_cols=35 Identities=14% Similarity=0.269 Sum_probs=26.1
Q ss_pred HHHHHHHHhccCCeEEEEEeecCCCCCcceEEEEEeCC
Q 021295 70 EDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDT 107 (314)
Q Consensus 70 e~~l~~~F~~~G~v~~v~i~~~~~~g~~rG~afV~F~~ 107 (314)
+.+|.+.+++.| |.+-.|..+..+ ..=|++++.++
T Consensus 26 WPEv~~~L~~aG-i~~ysIfl~~~~--~~LF~~~E~~d 60 (104)
T 1x8d_A 26 WPELEAVLKSHG-AHNYAIYLDKAR--NLLFAMVEIES 60 (104)
T ss_dssp CHHHHHHHHHTT-EEEEEEEEETTT--TEEEEEEEESC
T ss_pred CHHHHHHHHHcC-CeEEEEEEECCC--CeEEEEEEEcC
Confidence 378888888887 777777776432 23589999988
No 456
>3lo3_A Uncharacterized conserved protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 2.38A {Colwellia psychrerythraea} SCOP: d.58.4.0
Probab=30.41 E-value=89 Score=21.94 Aligned_cols=21 Identities=5% Similarity=0.137 Sum_probs=17.3
Q ss_pred cceEEEEEeCChHHHHHHHHh
Q 021295 97 SRGFGFITFDTEQAVDDLLAK 117 (314)
Q Consensus 97 ~rG~afV~F~~~~~a~~a~~~ 117 (314)
..-..+|+|.|.++|+++.+.
T Consensus 52 ~~~~viieFps~~aa~a~y~S 72 (94)
T 3lo3_A 52 HKAQVILEFPSREDAYNWYHS 72 (94)
T ss_dssp CSEEEEEEESSHHHHHHHHHS
T ss_pred CCeEEEEECCCHHHHHHHHCC
Confidence 455789999999999988763
No 457
>2djw_A Probable transcriptional regulator, ASNC family; structural genomics, thermus thermophilus HB8, NPPSFA; 2.40A {Thermus thermophilus}
Probab=30.33 E-value=95 Score=21.27 Aligned_cols=47 Identities=9% Similarity=0.102 Sum_probs=36.8
Q ss_pred CHHHHHHHHhccCCeEEEEEeecCCCCCcceEEEEEeCChHHHHHHHH-hcC
Q 021295 69 NEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLA-KGN 119 (314)
Q Consensus 69 ~e~~l~~~F~~~G~v~~v~i~~~~~~g~~rG~afV~F~~~~~a~~a~~-~l~ 119 (314)
+.+++.+.++++-+|.++..+. +...=.+.|.+.|.++.++.+. .+.
T Consensus 14 ~~~~~~~~l~~~peV~~~~~vt----G~~D~ll~v~~~d~~~l~~~l~~~l~ 61 (92)
T 2djw_A 14 RVQALGEAIAELPQVAEVYSVT----GPYDLVALVRLKDVEELDDVVTQGIL 61 (92)
T ss_dssp GHHHHHHHHTTSTTEEEEEEES----SSSSEEEEEEESSGGGHHHHCCCCCT
T ss_pred CHHHHHHHHhcCCCeEEEEEee----cCCCEEEEEEECCHHHHHHHHHHhcc
Confidence 3578888999999999998874 4455578899999999998873 443
No 458
>2zkr_s 60S ribosomal protein L23A; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}
Probab=30.08 E-value=65 Score=25.32 Aligned_cols=56 Identities=13% Similarity=0.164 Sum_probs=37.0
Q ss_pred EEEcCCCCCCCHHHHHHHHhcc-C-CeEEEEEeecCCCCCcceEEEEEeCChHHHHHHHHh
Q 021295 59 IFVGGIPSSVNEDEFKDFFMQF-G-DVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAK 117 (314)
Q Consensus 59 l~V~nLp~~~~e~~l~~~F~~~-G-~v~~v~i~~~~~~g~~rG~afV~F~~~~~a~~a~~~ 117 (314)
.|+-.++..++..||++.++++ + +|+.|..+.-.. ..--|+|++...+++......
T Consensus 95 ~yvF~Vd~~AnK~qIK~AVEklf~VkV~kVNTl~~~~---~~KKAiVtL~~g~~aid~~~k 152 (156)
T 2zkr_s 95 TLVFIVDVKANKHQIKQAVKKLYDIDVAKVNTLIRPD---GEKKAYVRLAPDYDALDVANK 152 (156)
T ss_dssp EEEEEECTTCCHHHHHHHHHHHHCCCEEEEEEEECSS---SCEEEEEEECTTSCHHHHHHH
T ss_pred cEEEEEECCCCHHHHHHHHHHHhCCcceEEEeeEcCC---CceEEEEEECCCCcHHHHHHh
Confidence 4555677889999999888764 3 466676655432 122599999887665444444
No 459
>3mfb_A Uncharacterized protein; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.20A {Erwinia carotovora}
Probab=29.87 E-value=81 Score=24.78 Aligned_cols=37 Identities=24% Similarity=0.363 Sum_probs=28.9
Q ss_pred CCHHHHHHHHhccCCeE---EEEEeecCCCCCcceEEEEE
Q 021295 68 VNEDEFKDFFMQFGDVQ---EHQIMRDHSTSRSRGFGFIT 104 (314)
Q Consensus 68 ~~e~~l~~~F~~~G~v~---~v~i~~~~~~g~~rG~afV~ 104 (314)
.|+++|+++-++.+++. ++.+..|..+++.+.++|-+
T Consensus 3 ~t~~~L~~~A~~~gta~trVR~~~~~de~~G~~~v~gv~T 42 (157)
T 3mfb_A 3 LTPEKLLEAANKQGTVPSRVRYQWMEDEETGRLKAVGYHT 42 (157)
T ss_dssp CCHHHHHHHHHTTCEEEBSEEEEEEECTTTCCEEEEEEEC
T ss_pred cCHHHHHHHHHhCCcccccEEEEEEecCCCCcEEEEEEEC
Confidence 58999999999999874 56666664488888877754
No 460
>3fut_A Dimethyladenosine transferase; methyltransferase, dimethyltransferase, dual-specific methyltransferase, 16S rRNA methyltransferase; 1.52A {Thermus thermophilus} PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A*
Probab=29.57 E-value=48 Score=28.48 Aligned_cols=33 Identities=9% Similarity=0.255 Sum_probs=25.7
Q ss_pred cceEEEcCCCCCCCHHHHHHHHhccCCeEEEEEe
Q 021295 56 TKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIM 89 (314)
Q Consensus 56 ~~~l~V~nLp~~~~e~~l~~~F~~~G~v~~v~i~ 89 (314)
...+.|+|||+.++...|.++++. ..++.+.++
T Consensus 110 ~~~~iv~NlPy~iss~il~~ll~~-~~~~~~~lm 142 (271)
T 3fut_A 110 QGSLLVANLPYHIATPLVTRLLKT-GRFARLVFL 142 (271)
T ss_dssp TTEEEEEEECSSCCHHHHHHHHHH-CCEEEEEEE
T ss_pred CccEEEecCcccccHHHHHHHhcC-CCCCEEEEE
Confidence 356789999999999999999987 555554443
No 461
>2cpq_A FragIle X mental retardation syndrome related protein 1, isoform B'; KH domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=28.39 E-value=1.6e+02 Score=20.78 Aligned_cols=48 Identities=21% Similarity=0.065 Sum_probs=30.5
Q ss_pred CCHHHHHHHHhccCC----------eEEEEEeecCCCCCcceEEEEEeCChHHHHHHHHhcCCe
Q 021295 68 VNEDEFKDFFMQFGD----------VQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKL 121 (314)
Q Consensus 68 ~~e~~l~~~F~~~G~----------v~~v~i~~~~~~g~~rG~afV~F~~~~~a~~a~~~l~~~ 121 (314)
+..+.|.++.-+-|. ++.|+|..+ .+..+|.=.+.+++++|++.++.+
T Consensus 21 I~~dkIg~vIG~gGk~Ik~I~e~tGv~~IdI~ed------dG~V~I~g~~~ea~~~A~~~I~~i 78 (91)
T 2cpq_A 21 VREDLMGLAIGTHGSNIQQARKVPGVTAIELDED------TGTFRIYGESADAVKKARGFLEFV 78 (91)
T ss_dssp CCHHHHHHHHTTTTHHHHHHHTSTTEEEEEEETT------TTEEEEEESSHHHHHHHHHHHSCC
T ss_pred EChHHhhhhcCCCcHHHHHHHHHhCCeEEEEEcC------CCEEEEEECCHHHHHHHHHHHHhh
Confidence 455666655554442 223666422 257788778999999999987654
No 462
>1aw0_A Menkes copper-transporting ATPase; copper-binding domain, hydrolase; NMR {Homo sapiens} SCOP: d.58.17.1 PDB: 2aw0_A
Probab=28.22 E-value=79 Score=19.55 Aligned_cols=55 Identities=9% Similarity=0.173 Sum_probs=35.7
Q ss_pred eEEEcCCCCCCCHHHHHHHHhccCCeEEEEEeecCCCCCcceEEEEEeCC----hHHHHHHHHhc
Q 021295 58 KIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDT----EQAVDDLLAKG 118 (314)
Q Consensus 58 ~l~V~nLp~~~~e~~l~~~F~~~G~v~~v~i~~~~~~g~~rG~afV~F~~----~~~a~~a~~~l 118 (314)
+|.|.++.-..-...|++.+.+.--|..+.+-.. ...+.|+|+. .+.+.++|+.+
T Consensus 6 ~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~------~~~~~v~~~~~~~~~~~i~~~i~~~ 64 (72)
T 1aw0_A 6 VINIDGMTCNSCVQSIEGVISKKPGVKSIRVSLA------NSNGTVEYDPLLTSPETLRGAIEDM 64 (72)
T ss_dssp EEEEECCCHHHHHHHHHHHHHTSTTCCCEEEETT------TTEEEEEECTTTCCHHHHHHHHHHH
T ss_pred EEEECCeecHHHHHHHHHHHhcCCCeEEEEEEcc------CCEEEEEECCCcCCHHHHHHHHHHC
Confidence 4666666554455778888888777777766543 2367888864 35556666653
No 463
>3swz_A Steroid 17-alpha-hydroxylase/17,20 lyase; cytochrome P450, CYP17A1, P450C17, P450 17A1, monooxyg 17A-hydroxylase, heme protein; HET: HEM TOK; 2.40A {Homo sapiens} PDB: 3ruk_A*
Probab=28.12 E-value=41 Score=30.88 Aligned_cols=50 Identities=16% Similarity=0.259 Sum_probs=37.3
Q ss_pred EEEcCCCCCC----CHHHHHHHHhccCCeEEEEEeecCCCCCcceEEEEEeCChHHHHHHHHh
Q 021295 59 IFVGGIPSSV----NEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAK 117 (314)
Q Consensus 59 l~V~nLp~~~----~e~~l~~~F~~~G~v~~v~i~~~~~~g~~rG~afV~F~~~~~a~~a~~~ 117 (314)
-+|+||+.-. ....+.++.++||+|..+++.. .-+|...+++.+++++.+
T Consensus 17 PliGnl~~l~~~~~~~~~~~~~~~kYG~i~~~~~g~---------~~~vvv~~p~~~k~il~~ 70 (494)
T 3swz_A 17 PLVGSLPFLPRHGHMHNNFFKLQKKYGPIYSVRMGT---------KTTVIVGHHQLAKEVLIK 70 (494)
T ss_dssp CEEEEESSCTTSSCHHHHHHHTHHHHCSEEEEEETT---------EEEEEECSHHHHHHHHTT
T ss_pred CeEcchHHhCCCCchhHHHHHHHHHcCCEEEEEeCC---------CCEEEECCHHHHHHHHHh
Confidence 4678876532 2356778888999998888743 347778899999999876
No 464
>2zbc_A 83AA long hypothetical transcriptional regulator; SARD; 1.90A {Sulfolobus tokodaii}
Probab=27.90 E-value=1.3e+02 Score=19.78 Aligned_cols=46 Identities=15% Similarity=0.152 Sum_probs=36.7
Q ss_pred CHHHHHHHHhccCCeEEEEEeecCCCCCcceEEEEEeCChHHHHHHHH-hc
Q 021295 69 NEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLA-KG 118 (314)
Q Consensus 69 ~e~~l~~~F~~~G~v~~v~i~~~~~~g~~rG~afV~F~~~~~a~~a~~-~l 118 (314)
..+++.+.+.++-+|.++..+ ++...=.+.|.+.|.++.++.+. .+
T Consensus 14 ~~~~~~~~l~~~peV~~~~~v----tG~~d~l~~v~~~d~~~l~~~~~~~l 60 (83)
T 2zbc_A 14 GEDEVFERLKSMSEVTEVHVV----YGVYDIVVKVEADSMDKLKDFVTNTI 60 (83)
T ss_dssp CHHHHHHHHTTCTTEEEEEEC----SSSCSEEEEEECSSHHHHHHHHHHTG
T ss_pred CHHHHHHHHhCCCCeEEEEEE----eccCCEEEEEEECCHHHHHHHHHHHh
Confidence 357888999999999999886 44455578899999999998885 44
No 465
>3u5c_Y RP50, 40S ribosomal protein S24-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_U* 3j16_D 3u5g_Y
Probab=27.61 E-value=1.7e+02 Score=22.25 Aligned_cols=47 Identities=15% Similarity=0.384 Sum_probs=28.4
Q ss_pred CCCHHHHHHHHhcc-CC---eEEE-EEeecCCCCCcceEEEEEeCChHHHHHH
Q 021295 67 SVNEDEFKDFFMQF-GD---VQEH-QIMRDHSTSRSRGFGFITFDTEQAVDDL 114 (314)
Q Consensus 67 ~~~e~~l~~~F~~~-G~---v~~v-~i~~~~~~g~~rG~afV~F~~~~~a~~a 114 (314)
.++..||++.+.+. .. ++.| .|....-.+++.|||.| |+|.+.|.+.
T Consensus 34 Tpsr~eIrekLAk~y~~~~d~VvV~g~rT~fG~gkstGfa~I-Yds~d~akk~ 85 (135)
T 3u5c_Y 34 NVSKDELREKLAEVYKAEKDAVSVFGFRTQFGGGKSVGFGLV-YNSVAEAKKF 85 (135)
T ss_dssp CCCHHHHHHHHHTTTTSCGGGEEEEEEEECTTSSEEEEEEEE-ESSHHHHHHH
T ss_pred CCCHHHHHHHHHHHHCCCCCEEEEEeeEeccCCceEEEEEEE-eCCHHHHHhc
Confidence 56789999888654 32 2222 33333344566777765 7777777654
No 466
>1y3j_A Copper-transporting ATPase 1; ferrodoxin-like fold, beta-alpha-beta-BETA-alpha-beta structure, structural proteomics in europe, spine; NMR {Homo sapiens} PDB: 1y3k_A
Probab=26.85 E-value=82 Score=20.04 Aligned_cols=56 Identities=7% Similarity=0.067 Sum_probs=37.0
Q ss_pred ceEEEcCCCCCCCHHHHHHHHhccCCeEEEEEeecCCCCCcceEEEEEeCC----hHHHHHHHHhc
Q 021295 57 KKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDT----EQAVDDLLAKG 118 (314)
Q Consensus 57 ~~l~V~nLp~~~~e~~l~~~F~~~G~v~~v~i~~~~~~g~~rG~afV~F~~----~~~a~~a~~~l 118 (314)
.+|.|.++.-..-...|++.+.+.--|..+.+-.. ...+.|+|+. .+.+.++|+.+
T Consensus 5 ~~~~v~gm~C~~C~~~ie~~l~~~~gv~~~~v~~~------~~~~~v~~~~~~~~~~~i~~~i~~~ 64 (77)
T 1y3j_A 5 CYIQVTGMTCASCVANIERNLRREEGIYSILVALM------AGKAEVRYNPAVIQPPMIAEFIREL 64 (77)
T ss_dssp EEEEESCGGGCSHHHHHHHHHTTSSSEEECCCBTT------TTBEEEEECTTTSCHHHHHHHHHHH
T ss_pred EEEEECCeeCHHHHHHHHHHHhcCCCeEEEEEEec------CCEEEEEECCCCCCHHHHHHHHHHc
Confidence 35667777666667889999988777776655332 2357888863 34556666653
No 467
>1fvq_A Copper-transporting ATPase; APO-CCC2A, hydrolase; NMR {Saccharomyces cerevisiae} SCOP: d.58.17.1 PDB: 1fvs_A 2ggp_B
Probab=26.85 E-value=1e+02 Score=18.99 Aligned_cols=54 Identities=15% Similarity=0.238 Sum_probs=34.1
Q ss_pred eEEEcCCCCCCCHHHHHHHHhccCCeEEEEEeecCCCCCcceEEEEEeC---ChHHHHHHHHh
Q 021295 58 KIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFD---TEQAVDDLLAK 117 (314)
Q Consensus 58 ~l~V~nLp~~~~e~~l~~~F~~~G~v~~v~i~~~~~~g~~rG~afV~F~---~~~~a~~a~~~ 117 (314)
+|.|.++.-......|++.+.+.--|..+.+-.. ...+.|+|+ +.+.+.++|+.
T Consensus 5 ~~~v~gm~C~~c~~~i~~~l~~~~gv~~~~v~~~------~~~~~v~~~~~~~~~~i~~~i~~ 61 (72)
T 1fvq_A 5 ILAVHGMTCSACTNTINTQLRALKGVTKCDISLV------TNECQVTYDNEVTADSIKEIIED 61 (72)
T ss_dssp EEEECSCCSHHHHHHHHHHHHTSSSEEEECCBTT------TTEEEEEECTTSCHHHHHHHHHH
T ss_pred EEEECCeecHHHHHHHHHHHhcCCCeEEEEEEec------CCEEEEEECCCCCHHHHHHHHHH
Confidence 4566666555556778888888766776665432 236778876 33455666655
No 468
>2kyz_A Heavy metal binding protein; structural genomics, PSI-biology, protein structure initiative, joint for structural genomics, JCSG; NMR {Thermotoga maritima}
Probab=26.61 E-value=55 Score=20.34 Aligned_cols=52 Identities=10% Similarity=0.129 Sum_probs=32.4
Q ss_pred EEEcCCCCCCCHHHHHHHHhccCCeEEEEEeecCCCCCcceEEEEEeCChHHHHHHHHh
Q 021295 59 IFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAK 117 (314)
Q Consensus 59 l~V~nLp~~~~e~~l~~~F~~~G~v~~v~i~~~~~~g~~rG~afV~F~~~~~a~~a~~~ 117 (314)
|.|.++.-..-...|++.+.+. .|..+.+-.. ...+.|+++..+.+.++|+.
T Consensus 5 ~~v~gm~C~~C~~~i~~~l~~~-gv~~~~v~~~------~~~~~v~~~~~~~i~~~i~~ 56 (67)
T 2kyz_A 5 LYVPDISCNHCKMRISKALEEL-GVKNYEVSVE------EKKVVVETENLDSVLKKLEE 56 (67)
T ss_dssp EECGGGGSHHHHHHHHHHHHHH-TCSEEEEETT------TTEEEEECSCHHHHHHHHHT
T ss_pred EEECCcCcHHHHHHHHHHHHHc-CCeEEEEECC------CCEEEEEECCHHHHHHHHHH
Confidence 4454554444456788888888 7877776543 23678888765445555554
No 469
>1mwy_A ZNTA; open-faced beta-sandwich fold, beta-alpha-beta-BETA-alpha- beta, hydrolase; NMR {Escherichia coli} SCOP: d.58.17.1 PDB: 1mwz_A
Probab=26.49 E-value=1.2e+02 Score=18.88 Aligned_cols=55 Identities=16% Similarity=0.178 Sum_probs=38.0
Q ss_pred ceEEEcCCCCCCCHHHHHHHHhccCCeEEEEEeecCCCCCcceEEEEEeCC--hHHHHHHHHh
Q 021295 57 KKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDT--EQAVDDLLAK 117 (314)
Q Consensus 57 ~~l~V~nLp~~~~e~~l~~~F~~~G~v~~v~i~~~~~~g~~rG~afV~F~~--~~~a~~a~~~ 117 (314)
.+|.|.++.-..-...|++.+.+.--|..+.+-.. ...+.|+++. .+.+.++|+.
T Consensus 5 ~~~~v~gm~C~~C~~~ie~~l~~~~gV~~~~v~~~------~~~~~v~~~~~~~~~i~~~i~~ 61 (73)
T 1mwy_A 5 YSWKVSGMDCAACARKVENAVRQLAGVNQVQVLFA------TEKLVVDADNDIRAQVESALQK 61 (73)
T ss_dssp EEEEEESCCSTTHHHHHHHHHHTSSSEEEEEEETT------TTEEEEEESSCCHHHHHHHHHH
T ss_pred EEEEECCcCCHHHHHHHHHHHhcCCCeeEEEEEec------CCEEEEEECCCCHHHHHHHHHH
Confidence 35677788766667889999998877887777543 2367888875 3445555555
No 470
>1cqm_A Ribosomal protein S6; alzheimer disease, oligomerization; 1.65A {Thermus thermophilus} SCOP: d.58.14.1 PDB: 1cqn_A 1qjh_A 1ris_A 1fka_F 1gix_I* 1hnw_F* 1hnx_F* 1hnz_F* 1hr0_F 1i94_F* 1i95_F* 1i96_F* 1i97_F* 1ibk_F* 1ibl_F* 1ibm_F 1j5e_F 1jgo_I* 1jgp_I* 1jgq_I* ...
Probab=26.37 E-value=1.1e+02 Score=21.73 Aligned_cols=52 Identities=10% Similarity=0.114 Sum_probs=28.6
Q ss_pred CCCCCHHHHHHHHhcc--------CCeEEEE------EeecCCCCCcce-EEEEEeCChHHHHHHHHh
Q 021295 65 PSSVNEDEFKDFFMQF--------GDVQEHQ------IMRDHSTSRSRG-FGFITFDTEQAVDDLLAK 117 (314)
Q Consensus 65 p~~~~e~~l~~~F~~~--------G~v~~v~------i~~~~~~g~~rG-~afV~F~~~~~a~~a~~~ 117 (314)
.+++++++++++.+++ |.|.++. +...- ....+| |.++.|+.+.++.+-|+.
T Consensus 11 ~p~l~~e~~~~~~~~~~~~i~~~gg~i~~~e~wG~R~LAY~I-~k~~~G~Y~l~~f~a~~~~i~eler 77 (101)
T 1cqm_A 11 NPNLDQSQLALEKEIIQRALENYGARVEKVAILGLRRLAYPI-AKDPQGYFLWYQVEMPEDRVNDLAR 77 (101)
T ss_dssp CTTCCHHHHHHHHHHHHHHHHHTTCEEEEEEEEEEEEEEEEE-TTEEEEEEEEEEEEECHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEeecCcccccCc-CCCCEEEEEEEEEEeChHHHHHHHH
Confidence 4567777777666554 4565543 21111 112333 577888877666555553
No 471
>2xzm_P RPS24E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_P
Probab=26.09 E-value=1.4e+02 Score=23.21 Aligned_cols=47 Identities=11% Similarity=0.249 Sum_probs=26.9
Q ss_pred CCCHHHHHHHHhc-cCC---eEEE-EEeecCCCCCcceEEEEEeCChHHHHHH
Q 021295 67 SVNEDEFKDFFMQ-FGD---VQEH-QIMRDHSTSRSRGFGFITFDTEQAVDDL 114 (314)
Q Consensus 67 ~~~e~~l~~~F~~-~G~---v~~v-~i~~~~~~g~~rG~afV~F~~~~~a~~a 114 (314)
.++..||++.+++ |.. ++.| .|....-.+++.|||.| |+|.+.|.+.
T Consensus 32 TpSk~eIrekLAkmy~~~~d~VvV~g~rT~fGggkStGfa~I-YDs~e~aKk~ 83 (149)
T 2xzm_P 32 TASKEKIREELAKQLKVDARNVVVYGFSTQYGGGKSTGFALV-YDNQQYLLKY 83 (149)
T ss_dssp SCCHHHHHHHHHHHHTCCGGGEEEEEECCCSSSSEEEEEEEE-ESCHHHHHHH
T ss_pred CCCHHHHHHHHHHHHCCCCCEEEEEeeEecCCCceEEEEEEE-eCCHHHHHhh
Confidence 5677888887765 332 2222 22222334566777765 6777777654
No 472
>3iz5_X 60S ribosomal protein L23A (L23P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_X 2go5_4 2j37_4
Probab=26.07 E-value=55 Score=25.60 Aligned_cols=56 Identities=7% Similarity=0.122 Sum_probs=36.8
Q ss_pred EEEcCCCCCCCHHHHHHHHhcc-C-CeEEEEEeecCCCCCcceEEEEEeCChHHHHHHHHh
Q 021295 59 IFVGGIPSSVNEDEFKDFFMQF-G-DVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAK 117 (314)
Q Consensus 59 l~V~nLp~~~~e~~l~~~F~~~-G-~v~~v~i~~~~~~g~~rG~afV~F~~~~~a~~a~~~ 117 (314)
.|+-.++..++..+|++.++++ . +|+.|..+..+. + .--|||++....+|.+....
T Consensus 91 ~~vF~Vd~~AnK~qIK~AVEklf~VkV~kVNTl~~~~-g--~KKAyV~L~~~~daldvAnk 148 (152)
T 3iz5_X 91 TLVFIVDLKADKKKIKAAVKKMYDIQAKKVNTLIRPD-G--KKKAYVKLTPDYDALDVANK 148 (152)
T ss_dssp EEEEEECSSCCSHHHHHHHHHHHTCCEEEEEEEECTT-S--SEEEEEEECTTSCHHHHHGG
T ss_pred EEEEEEcCCCCHHHHHHHHHHHhCCcceEEEeeEcCC-C--ceEEEEEcCCCCcHHHHHHh
Confidence 3455567788889998888764 3 466676665432 1 22599999887766655443
No 473
>1p6t_A Potential copper-transporting ATPase; COPA, P-type ATPase, water-soluble region, beta-alpha-beta- beta-alpha-beta fold; NMR {Bacillus subtilis} SCOP: d.58.17.1 d.58.17.1 PDB: 2rml_A
Probab=25.89 E-value=1.7e+02 Score=21.51 Aligned_cols=56 Identities=5% Similarity=0.096 Sum_probs=38.2
Q ss_pred ceEEEcCCCCCCCHHHHHHHHhccCCeEEEEEeecCCCCCcceEEEEEeC----ChHHHHHHHHhc
Q 021295 57 KKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFD----TEQAVDDLLAKG 118 (314)
Q Consensus 57 ~~l~V~nLp~~~~e~~l~~~F~~~G~v~~v~i~~~~~~g~~rG~afV~F~----~~~~a~~a~~~l 118 (314)
.+|.|.++.-..-...|++.+.+.--|..+.+-.. ...+.|+|+ +.+++.++|+.+
T Consensus 76 ~~~~v~gm~C~~C~~~ie~~l~~~~gv~~~~v~~~------~~~~~v~~~~~~~~~~~i~~~i~~~ 135 (151)
T 1p6t_A 76 AEFDIEGMTCAACANRIEKRLNKIEGVANAPVNFA------LETVTVEYNPKEASVSDLKEAVDKL 135 (151)
T ss_dssp EEEEESSCCSSSHHHHHHHHHTTSSSEEECCEETT------TTEEEEEECTTTCCHHHHHHHHHHH
T ss_pred cEEEecCCCCHHHHHHHHHHHhcCCCceEEEEEcc------CCEEEEEECCCCCCHHHHHHHHHHc
Confidence 35777777777777888888888777777666533 236788886 345666666653
No 474
>2e7g_A Putative ribosome-binding factor A; RBFA, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.52.7.1
Probab=25.39 E-value=86 Score=23.57 Aligned_cols=31 Identities=6% Similarity=0.021 Sum_probs=17.4
Q ss_pred CCeEEEEEeecCCCCCcceEEEEE-eCChHHHHHHH
Q 021295 81 GDVQEHQIMRDHSTSRSRGFGFIT-FDTEQAVDDLL 115 (314)
Q Consensus 81 G~v~~v~i~~~~~~g~~rG~afV~-F~~~~~a~~a~ 115 (314)
=.|.+|+|..|.. .-.+||+ |-+.++.+.++
T Consensus 44 vtVt~V~vS~Dl~----~AkVyvs~~~~~~~~~~~~ 75 (129)
T 2e7g_A 44 VELSKVSLTPDFS----ACRAYWKTTLSAEQNAHME 75 (129)
T ss_dssp CCEEEEEECTTSC----CEEEEECCCSCHHHHHHHH
T ss_pred eEEEEEEECCCCc----EEEEEEEecCChhhHHHHH
Confidence 3588899987742 2345666 44444333333
No 475
>2cg4_A Regulatory protein ASNC; DNA binding, FFRP, LRP family, transcription, DNA- binding, transcription regulation; 2.4A {Escherichia coli} SCOP: a.4.5.32 d.58.4.2
Probab=25.22 E-value=2.2e+02 Score=21.36 Aligned_cols=54 Identities=15% Similarity=0.038 Sum_probs=40.7
Q ss_pred CCCCCCCHHHHHHHHhccCCeEEEEEeecCCCCCcceEEEEEeCChHHHHHHHH-hcCC
Q 021295 63 GIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLA-KGNK 120 (314)
Q Consensus 63 nLp~~~~e~~l~~~F~~~G~v~~v~i~~~~~~g~~rG~afV~F~~~~~a~~a~~-~l~~ 120 (314)
.++.....+++.+.+.++-+|.+|..+ ++...=++.|.+.+.++.++.+. .+..
T Consensus 75 ~~~~~~~~~~~~~~l~~~peV~~~~~v----tG~~d~~~~v~~~d~~~l~~~l~~~l~~ 129 (152)
T 2cg4_A 75 ILKSAKDYPSALAKLESLDEVTEAYYT----TGHYSIFIKVMCRSIDALQHVLINKIQT 129 (152)
T ss_dssp EESSGGGHHHHHHHHHTCTTEEEEEEE----SSSCSEEEEEEESCHHHHHHHHHHTTTT
T ss_pred EECCCCCHHHHHHHHhCCcCeEEEEEE----ecccCEEEEEEECCHHHHHHHHHHHhhc
Confidence 444433567889999999999999887 44455578899999999999884 5443
No 476
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=25.16 E-value=47 Score=23.99 Aligned_cols=18 Identities=22% Similarity=0.449 Sum_probs=16.2
Q ss_pred EEEEEECCHHHHHHHHHc
Q 021295 12 FGFVTYADPSVVDKVIED 29 (314)
Q Consensus 12 ~aFV~f~~~~~a~~A~~~ 29 (314)
-|||.|.+++.|..|++.
T Consensus 51 sAlvvf~~~~~a~~al~~ 68 (100)
T 1whv_A 51 SAFVSLSQPEQVQIAVNT 68 (100)
T ss_dssp EEEEECSCHHHHHHHHHH
T ss_pred eEEEEecCHHHHHHHHHh
Confidence 599999999999999883
No 477
>3ced_A Methionine import ATP-binding protein METN 2; ABC transporter, NIL domain, structur genomics, PSI-2, protein structure initiative; 2.15A {Staphylococcus aureus subsp} SCOP: d.58.18.13
Probab=25.09 E-value=1.1e+02 Score=21.72 Aligned_cols=54 Identities=7% Similarity=0.007 Sum_probs=32.3
Q ss_pred CCCCHHHHHHHHhccCCeEEEEEe-ecCCCCCcceEEEEEeC--ChHHHHHHHHhcC
Q 021295 66 SSVNEDEFKDFFMQFGDVQEHQIM-RDHSTSRSRGFGFITFD--TEQAVDDLLAKGN 119 (314)
Q Consensus 66 ~~~~e~~l~~~F~~~G~v~~v~i~-~~~~~g~~rG~afV~F~--~~~~a~~a~~~l~ 119 (314)
..+.+..|.++..+|+....|.-- .+.-.+.+-|.-+|++. +.+++++|++.|.
T Consensus 30 ~~~~~PvIs~l~~~~~v~vnIL~g~I~~i~~~~~G~L~v~l~G~~~~~~~~ai~~L~ 86 (98)
T 3ced_A 30 STTTEPIVSSLSTAYDIKINILEANIKNTKNGTVGFLVLHIPYISSVDFGKFEKELI 86 (98)
T ss_dssp ESCHHHHHHHHHHHHTCCCEEEEEEEEEETTEEEEEEEEEESCCCHHHHHHHHHHHH
T ss_pred CccCchHHHHHHHHHCCcEEEEEEEeEEeCCEeEEEEEEEEeCCCHHHHHHHHHHHH
Confidence 345666777887888642222111 11223446678888888 4677888887763
No 478
>3rfw_A Cell-binding factor 2; SURA-like, chaperone; 2.20A {Campylobacter jejuni}
Probab=24.48 E-value=74 Score=26.54 Aligned_cols=46 Identities=17% Similarity=0.153 Sum_probs=29.9
Q ss_pred CCCCHHHHHHHHhccCCeEEEEEeecCCCCCcceEEEEEeCChHHHHHHHHhcC
Q 021295 66 SSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGN 119 (314)
Q Consensus 66 ~~~~e~~l~~~F~~~G~v~~v~i~~~~~~g~~rG~afV~F~~~~~a~~a~~~l~ 119 (314)
..+|+++|+++|.+.-.- .... ...-+..|.|.+++.|+++++.|.
T Consensus 89 ~~vtd~ei~~~Y~~~~~~--f~~~------~~~~~~~I~~~~~~~A~~~~~~l~ 134 (252)
T 3rfw_A 89 IKIDAAKVKAFYDQNKDK--YVKP------ARVQAKHILVATEKEAKDIINELK 134 (252)
T ss_dssp CCCCHHHHHHHHHHHGGG--SEEC------CEEEEEEEEESSHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHhHHh--cccc------ceEEEEEEEeCCHHHHHHHHHHHH
Confidence 368999999999864211 0000 011156778888889999888876
No 479
>2qif_A Copper chaperone COPZ; tetranuclear Cu(I) cluster; 1.50A {Bacillus subtilis} SCOP: d.58.17.1 PDB: 3i9z_A 1k0v_A 1p8g_A
Probab=24.34 E-value=1.2e+02 Score=18.07 Aligned_cols=54 Identities=13% Similarity=0.196 Sum_probs=34.9
Q ss_pred eEEEcCCCCCCCHHHHHHHHhccCCeEEEEEeecCCCCCcceEEEEEeCC----hHHHHHHHHh
Q 021295 58 KIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDT----EQAVDDLLAK 117 (314)
Q Consensus 58 ~l~V~nLp~~~~e~~l~~~F~~~G~v~~v~i~~~~~~g~~rG~afV~F~~----~~~a~~a~~~ 117 (314)
+|.|.++.-......|++.+.+.-.|..+.+-.. ...+.|+|+. .+.+.++|+.
T Consensus 5 ~~~v~gm~C~~c~~~i~~~l~~~~gv~~~~v~~~------~~~~~v~~~~~~~~~~~i~~~i~~ 62 (69)
T 2qif_A 5 TLQVEGMSCQHCVKAVETSVGELDGVSAVHVNLE------AGKVDVSFDADKVSVKDIADAIED 62 (69)
T ss_dssp EEEEECCCSHHHHHHHHHHHHTSTTEEEEEEETT------TTEEEEEECTTTCCHHHHHHHHHH
T ss_pred EEEECCcccHHHHHHHHHHHhcCCCeeEEEEEec------CCEEEEEECCCCCCHHHHHHHHHH
Confidence 4666666554455678888888777877776533 2367888864 3455566665
No 480
>1qyr_A KSGA, high level kasugamycin resistance protein, S-adenosylMet; adenosine dimethyltransferase, rRNA modification, transferase, translation; 2.10A {Escherichia coli} SCOP: c.66.1.24 PDB: 4adv_V 3tpz_A
Probab=23.93 E-value=52 Score=27.79 Aligned_cols=32 Identities=9% Similarity=0.216 Sum_probs=23.9
Q ss_pred ceEEEcCCCCCCCHHHHHHHHhccCCeEEEEE
Q 021295 57 KKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQI 88 (314)
Q Consensus 57 ~~l~V~nLp~~~~e~~l~~~F~~~G~v~~v~i 88 (314)
..+.|+|||+.++...|.++++..-.+..+.+
T Consensus 91 ~~~vvsNlPY~i~~~il~~ll~~~~~~~~~~~ 122 (252)
T 1qyr_A 91 PLRVFGNLPYNISTPLMFHLFSYTDAIADMHF 122 (252)
T ss_dssp CEEEEEECCTTTHHHHHHHHHTTGGGEEEEEE
T ss_pred ceEEEECCCCCccHHHHHHHHhcCCCcceEEE
Confidence 46889999999999999888875434444433
No 481
>3rgo_A Protein-tyrosine phosphatase mitochondrial 1; phosphatidylglycerol phosphate (PGP) phosphatase, hydrolase; 1.93A {Mus musculus} PDB: 3rgq_A*
Probab=23.53 E-value=1.2e+02 Score=22.82 Aligned_cols=26 Identities=12% Similarity=0.303 Sum_probs=16.2
Q ss_pred ceEEEcCCCCCCCHHHHHHHHhccCCeEEE
Q 021295 57 KKIFVGGIPSSVNEDEFKDFFMQFGDVQEH 86 (314)
Q Consensus 57 ~~l~V~nLp~~~~e~~l~~~F~~~G~v~~v 86 (314)
..|||+++|... ++.+++++.+ |+.|
T Consensus 7 ~~l~~g~~~~~~---~~~~ll~~~g-i~~V 32 (157)
T 3rgo_A 7 HTVLLGALPLKN---MTRRLVLDEN-VRGV 32 (157)
T ss_dssp SSEEEESCCCGG---GHHHHHHHSC-EEEE
T ss_pred CCeEEecCcCcc---chHHHHHHcC-CCEE
Confidence 469999888663 4555555665 4443
No 482
>3vej_A Ubiquitin-like protein MDY2; alpha helical, dimerization, homodimerization, protein bindi; 1.23A {Saccharomyces cerevisiae}
Probab=22.93 E-value=62 Score=19.26 Aligned_cols=15 Identities=13% Similarity=0.213 Sum_probs=11.2
Q ss_pred CCCCCHHHHHHHHhc
Q 021295 65 PSSVNEDEFKDFFMQ 79 (314)
Q Consensus 65 p~~~~e~~l~~~F~~ 79 (314)
+.++.+++|+.++..
T Consensus 3 ~l~VPWd~Ie~lL~~ 17 (41)
T 3vej_A 3 DLTVPWDDIEALLKN 17 (41)
T ss_dssp CTTSCHHHHHHHHHH
T ss_pred eeecCHHHHHHHHHH
Confidence 446778999988864
No 483
>2e1c_A Putative HTH-type transcriptional regulator PH151; DNA-binding, transcriptional regulatory protein, archaeal; HET: DNA; 2.10A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2 PDB: 1ri7_A* 2zny_A* 2znz_A*
Probab=22.68 E-value=2.7e+02 Score=21.58 Aligned_cols=51 Identities=10% Similarity=0.041 Sum_probs=38.9
Q ss_pred CCCCCCCHHHHHHHHhccCCeEEEEEeecCCCCCcceEEEEEeCChHHHHHHHHhc
Q 021295 63 GIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKG 118 (314)
Q Consensus 63 nLp~~~~e~~l~~~F~~~G~v~~v~i~~~~~~g~~rG~afV~F~~~~~a~~a~~~l 118 (314)
.++ ....+++.+.+.++-+|..|..+ ++...=++.|.+.+.+++++.++.+
T Consensus 94 ~~~-~~~~~~v~~~l~~~peV~~~~~v----tG~~d~l~~v~~~d~~~l~~~l~~l 144 (171)
T 2e1c_A 94 KVK-AGKYSEVASNLAKYPEIVEVYET----TGDYDMVVKIRTKNSEELNNFLDLI 144 (171)
T ss_dssp EEC-TTCHHHHHHHHHTSTTEEEEEEC----SSSSSEEEEEEESSHHHHHHHHHHH
T ss_pred EEC-cchHHHHHHHHhcCcCeEEEEEe----eCCCCEEEEEEECCHHHHHHHHHHH
Confidence 454 33557888999999999998875 3445567889999999998887654
No 484
>2cyy_A Putative HTH-type transcriptional regulator PH151; structural genomics, pyrococcus horikosii OT3, NPPSFA; HET: MSE GLN; 1.80A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2
Probab=22.43 E-value=2.5e+02 Score=21.02 Aligned_cols=53 Identities=9% Similarity=0.043 Sum_probs=40.1
Q ss_pred CCCCCCCHHHHHHHHhccCCeEEEEEeecCCCCCcceEEEEEeCChHHHHHHHHhcCC
Q 021295 63 GIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNK 120 (314)
Q Consensus 63 nLp~~~~e~~l~~~F~~~G~v~~v~i~~~~~~g~~rG~afV~F~~~~~a~~a~~~l~~ 120 (314)
.++ ....+++.+.+.++-+|..|..+ ++...=++.|.+.+.++.++.++.+..
T Consensus 74 ~~~-~~~~~~~~~~l~~~p~V~~~~~~----tG~~d~~~~v~~~d~~~l~~~~~~l~~ 126 (151)
T 2cyy_A 74 KVK-AGKYSEVASNLAKYPEIVEVYET----TGDYDMVVKIRTKNSEELNNFLDLIGS 126 (151)
T ss_dssp EEC-TTCHHHHHHHHHTCTTEEEEEEC----SSSSSEEEEEEESSHHHHHHHHHHHHT
T ss_pred EEC-cccHHHHHHHHhcCCCeeEeeEe----cCCCCEEEEEEECCHHHHHHHHHHHhC
Confidence 444 34568889999999999998875 344555788999999999988865543
No 485
>3ts2_A Protein LIN-28 homolog A; microrna biogenesis, protein-RNA complex, PRE-element, CCHC knuckle; HET: GMP; 2.01A {Mus musculus} PDB: 3trz_A* 3ts0_A*
Probab=22.16 E-value=11 Score=29.37 Aligned_cols=28 Identities=18% Similarity=0.395 Sum_probs=15.6
Q ss_pred HHHHHHHhccCCeEEEEEeecCCCCCcceEEEEEeC
Q 021295 71 DEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFD 106 (314)
Q Consensus 71 ~~l~~~F~~~G~v~~v~i~~~~~~g~~rG~afV~F~ 106 (314)
+||.++|...|.|+.... .|||+||+.+
T Consensus 2 ~~~~~l~~~~G~Vkwfn~--------~kGfGFI~~~ 29 (148)
T 3ts2_A 2 ADEPQLLHGAGICKWFNV--------RMGFGFLSMT 29 (148)
T ss_dssp ----CCEEEEEEEEEEET--------TTTEEEEEEE
T ss_pred CcccccccceeEEEEEEC--------CCCeeEEeeC
Confidence 455566666665554332 4789999976
No 486
>3fjv_A Uncharacterized novel protein; YP_111841.1, novel protein of unknown function; HET: MSE; 1.90A {Burkholderia pseudomallei K96243}
Probab=22.11 E-value=71 Score=26.05 Aligned_cols=47 Identities=15% Similarity=0.116 Sum_probs=33.5
Q ss_pred CCHHHHHHHHhccCCeEEEEEeecCCCCCcceEEEEEeCChHHHHHHHHhcCCe
Q 021295 68 VNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKL 121 (314)
Q Consensus 68 ~~e~~l~~~F~~~G~v~~v~i~~~~~~g~~rG~afV~F~~~~~a~~a~~~l~~~ 121 (314)
+.+++|.+.++.|.++. + ..+.-+-.-||++.++++.++.|..|.++
T Consensus 65 ~~~~~I~~Ei~aYnpLi-----P--~~~~l~ATl~IE~~d~~er~~~L~~L~Gi 111 (194)
T 3fjv_A 65 FDEDGIQAELDAYLPLV-----P--DGSNLKATLQIEYENETQRRAALARLVGI 111 (194)
T ss_dssp CSHHHHHHHHHHHGGGC-----C--CSSEEEEEEEECCSSHHHHHHHHHHTTTG
T ss_pred CCHHHHHHHHHHhcccC-----C--CCCcEEEEEEEEcCCHHHHHHHHHHhcCc
Confidence 35678888887776543 1 12233445699999999999999998764
No 487
>1rjj_A Expressed protein; beta barrel, homodimer, structural genomics, protein structure initiative, center for eukaryotic structural genomics; NMR {Arabidopsis thaliana} SCOP: d.58.4.4
Probab=21.94 E-value=1.9e+02 Score=20.66 Aligned_cols=73 Identities=15% Similarity=0.119 Sum_probs=38.9
Q ss_pred CCCCCCCHHHHHHHHh----ccCCeEEEEEeecC-CC-CCcceE---EEEEeCChHHHHHHHHhc-C------CeeeCCe
Q 021295 63 GIPSSVNEDEFKDFFM----QFGDVQEHQIMRDH-ST-SRSRGF---GFITFDTEQAVDDLLAKG-N------KLELAGA 126 (314)
Q Consensus 63 nLp~~~~e~~l~~~F~----~~G~v~~v~i~~~~-~~-g~~rG~---afV~F~~~~~a~~a~~~l-~------~~~~~gr 126 (314)
.|..++..+++++.|+ +.-.|+.+.+-++. .+ ...++| .+++|+|.++.+.-+..- | -..+...
T Consensus 13 klk~~~~~~~~~~~l~~L~~~ip~i~~~~~G~~~~~~~~~~~~~~~~l~~~F~s~e~l~~Y~~hP~H~~~~~~~~~~~~~ 92 (111)
T 1rjj_A 13 KFKEDTKVDEILKGLENLVSQIDTVKSFEWGEDKESHDMLRQGFTHAFSMTFENKDGYVAFTSHPLHVEFSAAFTAVIDK 92 (111)
T ss_dssp ECSSCCCHHHHHHHHHHHHGGGGGSCEEEEEEECCSCTTTSTTCCEEEEEEESSHHHHHHHHTSHHHHHHHHHHHHTCSE
T ss_pred EECCcchHHHHHHHHHHHHhcCCceEEEEEcCCCCCccccCCCccEEEEEEECCHHHHHHHhCCHHHHHHHHHHHHHhcc
Confidence 4444444555555544 44567777777664 32 233443 457999988776543210 0 0124456
Q ss_pred EEEEeecCC
Q 021295 127 QVEVKKAEP 135 (314)
Q Consensus 127 ~l~V~~a~~ 135 (314)
.+.+.+...
T Consensus 93 ~~v~D~~~~ 101 (111)
T 1rjj_A 93 IVLLDFPVA 101 (111)
T ss_dssp EEEEEEEEC
T ss_pred eEEEEeEcc
Confidence 667766543
No 488
>1wrm_A Dual specificity phosphatase 22; DSP, JNK, hydrolase; HET: MES; 1.50A {Homo sapiens}
Probab=21.70 E-value=1.2e+02 Score=23.31 Aligned_cols=43 Identities=9% Similarity=0.314 Sum_probs=23.7
Q ss_pred eEEEcCCCCCCCHHHHHHHHhccCCeEEEEEeecCCCCCcceEEEEEe
Q 021295 58 KIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITF 105 (314)
Q Consensus 58 ~l~V~nLp~~~~e~~l~~~F~~~G~v~~v~i~~~~~~g~~rG~afV~F 105 (314)
.|||++++...+.+.|++ . .|+.|.-+++.......++.++.+
T Consensus 13 ~lylG~~~~~~d~~~L~~----~-gI~~Vi~l~~~~~~~~~~i~~~~i 55 (165)
T 1wrm_A 13 GLYIGNFKDARDAEQLSK----N-KVTHILSVHDSARPMLEGVKYLCI 55 (165)
T ss_dssp TEEEECTTGGGCHHHHHH----T-TEEEEEECSTTCCCCSTTCEEEEC
T ss_pred CEEECChhHhcCHHHHHH----C-CCcEEEEecCCCCCCCCCCeEEEE
Confidence 499999987666555544 3 355443333322223345556555
No 489
>2ew9_A Copper-transporting ATPase 2; copper trafficking, ferrodoxin-like fold, structural genomics, structural proteomics in europe, spine, hydrolase; NMR {Homo sapiens}
Probab=21.62 E-value=1.5e+02 Score=21.61 Aligned_cols=57 Identities=5% Similarity=0.158 Sum_probs=40.0
Q ss_pred cceEEEcCCCCCCCHHHHHHHHhccCCeEEEEEeecCCCCCcceEEEEEeCC----hHHHHHHHHhc
Q 021295 56 TKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDT----EQAVDDLLAKG 118 (314)
Q Consensus 56 ~~~l~V~nLp~~~~e~~l~~~F~~~G~v~~v~i~~~~~~g~~rG~afV~F~~----~~~a~~a~~~l 118 (314)
..+|.|.++.-..-...|++.+.+.--|..+.+-.. ...+.|+|+. .+++.++|+.+
T Consensus 81 ~~~~~v~gm~C~~C~~~ie~~l~~~~gv~~~~v~~~------~~~~~v~~~~~~~~~~~i~~~i~~~ 141 (149)
T 2ew9_A 81 NIELTITGMTCASCVHNIESKLTRTNGITYASVALA------TSKALVKFDPEIIGPRDIIKIIEEI 141 (149)
T ss_dssp EEEEEEESCCSHHHHHHHHHHHHHSSSCCEEEEETT------TTEEEEECCTTTSCHHHHHHHHHHH
T ss_pred eeEEEEEeccCHHHHHHHHHHHhcCCCeEEEEEEcC------CCEEEEEECCCCCCHHHHHHHHHhC
Confidence 446778888766667788899988877877777543 2368888863 45666667663
No 490
>1jrm_A MTH0637, conserved hypothetical protein MTH637; alpha-beta protein, structural genomics, OCSP, NESG; NMR {Methanothermobacterthermautotrophicus} SCOP: d.206.1.1
Probab=21.50 E-value=1.7e+02 Score=21.08 Aligned_cols=65 Identities=20% Similarity=0.193 Sum_probs=39.8
Q ss_pred CCcceEEEcCCCCC-CCHHHHHHHHhc-cCCeEEEEEeecCCCCCcceEEEEEeCChHHHHHHHHhcCCee
Q 021295 54 FKTKKIFVGGIPSS-VNEDEFKDFFMQ-FGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLE 122 (314)
Q Consensus 54 ~~~~~l~V~nLp~~-~~e~~l~~~F~~-~G~v~~v~i~~~~~~g~~rG~afV~F~~~~~a~~a~~~l~~~~ 122 (314)
...-+|.|.-.|.+ -..++|.++|++ ++ .+|.|..- .+.+.|- -.|+=.+++++.+.|+.+-.++
T Consensus 36 ~~~lkv~v~ApP~dGkAN~ali~~LAk~l~--s~V~i~~G-~tsR~K~-v~I~~~~~~~l~~~L~~~~~~~ 102 (104)
T 1jrm_A 36 RKRIEVKIHSPPQKGKANREIIKEFSETFG--RDVEIVSG-QKSRQKT-IRIQGMGRDLFLKLVSEKFGLE 102 (104)
T ss_dssp TTCCCCCCCTTCCCCCHHHHHHHHHHHHHS--SEEEECSC-GGGSEEE-EEEESCCHHHHHHHHHHTSCCC
T ss_pred CCEEEEEEecCCCCChHHHHHHHHHHHHhC--CCEEEEec-CCCCceE-EEEcCCCHHHHHHHHHHHhccc
Confidence 34567778888875 344667777754 56 78888765 3444442 2333346777888777654433
No 491
>1wvf_A 4-cresol dehydrogenase [hydroxylating] flavoprote subunit; flavoprotein, electron-transfer, FAD, oxidoreductase; HET: FAD; 1.30A {Pseudomonas putida} SCOP: d.58.32.1 d.145.1.1 PDB: 1wve_A* 1dii_A* 1diq_A*
Probab=21.12 E-value=64 Score=30.44 Aligned_cols=43 Identities=9% Similarity=0.125 Sum_probs=28.8
Q ss_pred HHHHHH--hccCCeEEEEEeecCCCCCcceEEEEEeCChHHHHHHH
Q 021295 72 EFKDFF--MQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLL 115 (314)
Q Consensus 72 ~l~~~F--~~~G~v~~v~i~~~~~~g~~rG~afV~F~~~~~a~~a~ 115 (314)
+|+.+| +.+|.|+++.|...+. .+....+++.|.+.+++.+|+
T Consensus 217 ~l~~l~~g~~lGiVt~~~l~l~p~-p~~~~~~~~~f~~~~~~~~~~ 261 (520)
T 1wvf_A 217 TLDGMFTQANYGICTKMGFWLMPK-PPVFKPFEVIFEDEADIVEIV 261 (520)
T ss_dssp CCHHHHTTSSSCEEEEEEEECEEC-CSEEEEEEEEECCGGGHHHHH
T ss_pred chhhhccCCceEEEEEEEEEEEec-CCeEEEEEEEeCCHHHHHHHH
Confidence 456677 3678898887765542 233456789999987776644
No 492
>4bby_A Alkyldihydroxyacetonephosphate synthase, peroxiso; transferase, plasmalogen, flavin, peroxisome; HET: FAD; 1.90A {Cavia porcellus} PDB: 4bc9_A* 4bca_A* 4bc7_A*
Probab=21.08 E-value=55 Score=32.02 Aligned_cols=55 Identities=16% Similarity=0.219 Sum_probs=39.1
Q ss_pred CCCCCCCHHHHHHHHh----ccCCeEEEEEeecCCCCCcceEEEEEeCChHHHHHHHHhc
Q 021295 63 GIPSSVNEDEFKDFFM----QFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKG 118 (314)
Q Consensus 63 nLp~~~~e~~l~~~F~----~~G~v~~v~i~~~~~~g~~rG~afV~F~~~~~a~~a~~~l 118 (314)
.++.+.+--||.++|- .+|.|+++.|...+. .+.+-+++|.|.+.+++.+++..+
T Consensus 350 ~~~k~~aGyDL~~L~iGSEGTLGIITeatLrL~P~-P~~~~~~~~~f~d~~~a~~av~~i 408 (658)
T 4bby_A 350 QGPRMSTGPDIHHFIMGSEGTLGVITEATIKIRPT-PEYQKYGSVAFPNFEQGVACLREI 408 (658)
T ss_dssp CCSSCCSSSCTHHHHTTCTTSSCEEEEEEEECEEC-CSEEEEEEEEESSHHHHHHHHHHH
T ss_pred cccccCCCcCHHHHhccCCCcCcceeeeeeeeccC-CccccccccccCCchhhhhhHHHH
Confidence 3455555568999984 568888877765432 234567899999999988888764
No 493
>2inr_A DNA topoisomerase 4 subunit A; topoisomerase II fold; HET: DNA; 2.80A {Staphylococcus aureus}
Probab=21.02 E-value=99 Score=29.24 Aligned_cols=62 Identities=16% Similarity=0.171 Sum_probs=32.7
Q ss_pred cceEEEcCCCCCCCHHHHHHHHhcc---CCeEEEEEeecCCCCCcceEEEEEeCChHHHHHHHHhc
Q 021295 56 TKKIFVGGIPSSVNEDEFKDFFMQF---GDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKG 118 (314)
Q Consensus 56 ~~~l~V~nLp~~~~e~~l~~~F~~~---G~v~~v~i~~~~~~g~~rG~afV~F~~~~~a~~a~~~l 118 (314)
.++|.|..||+.++.+.|.+...+. .+|+.|.=++|..+ +..---.|+++....++..++.|
T Consensus 275 ~~~IvITElPy~v~k~~lie~I~~lv~~kki~~I~dirDesd-~~gvrivIelk~~~~~e~vl~~L 339 (514)
T 2inr_A 275 RKQLIITEIPYEVNKSSLVKRIDELRADKKVDGIVEVRDETD-RTGLRIAIELKKDVNSESIKNYL 339 (514)
T ss_dssp CCEEEEEECCTTCCHHHHHHHHHHHHHHTSCC---CEEECCB-TTBCCEEEEC------CHHHHHH
T ss_pred ccEEEEEecCceeeHHHHHHHHHHHHhcCCcCccchhhhcCC-CCceEEEEEECCCcCHHHHHHHH
Confidence 3689999999999998887655432 34544444445322 22223456676666666666654
No 494
>2j5a_A 30S ribosomal protein S6; ribonucleoprotein, RIBO protein S6, RNA-binding, rRNA-binding, protein folding; 2.3A {Aquifex aeolicus} SCOP: d.58.14.1
Probab=20.80 E-value=1.4e+02 Score=21.61 Aligned_cols=53 Identities=17% Similarity=0.276 Sum_probs=27.8
Q ss_pred CCCCCCHHHHHHHHhcc--------CCeEEEEEeec-----CCCCCcce-EEEEEeCC-hHHHHHHHH
Q 021295 64 IPSSVNEDEFKDFFMQF--------GDVQEHQIMRD-----HSTSRSRG-FGFITFDT-EQAVDDLLA 116 (314)
Q Consensus 64 Lp~~~~e~~l~~~F~~~--------G~v~~v~i~~~-----~~~g~~rG-~afV~F~~-~~~a~~a~~ 116 (314)
|.+++++++++++.+++ |.|.++...=. +-....+| |.++.|+. +.++.+.|+
T Consensus 16 l~p~l~~e~~~~~v~~~~~~i~~~Gg~i~~~e~wG~R~LAY~I~K~~~G~Y~l~~f~a~~~~~i~ele 83 (110)
T 2j5a_A 16 VKPTLSEEEMKKKFEQVKEFIKQKGGEILYEEDWGMRQLAYPIQKFNNARYFLVQFKTENPQLPNELD 83 (110)
T ss_dssp ECTTSCHHHHHHHHHHHHHHHHHTTEEEEEEEEEEEEECSSCSSSCSEEEEEEEEEEESCTTHHHHHH
T ss_pred ECCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEeecCcccccCcCCCCEEEEEEEEEEeCCHHHHHHHH
Confidence 35567777777666554 35555432211 11223344 57788877 554444444
No 495
>3hhl_A RPA0582; alpha-beta-barrel, structural genomics, PSI-2, protein struc initiative, reductive methylation; HET: MLY MLZ PGE 2PE PE8 1PE PG4; 2.65A {Rhodopseudomonas palustris} PDB: 3hhl_B* 3hhl_C* 3dca_A
Probab=20.70 E-value=2.8e+02 Score=21.06 Aligned_cols=20 Identities=5% Similarity=0.021 Sum_probs=16.4
Q ss_pred cceEEEEEeCChHHHHHHHH
Q 021295 97 SRGFGFITFDTEQAVDDLLA 116 (314)
Q Consensus 97 ~rG~afV~F~~~~~a~~a~~ 116 (314)
..-..+|+|.|.++|.++..
T Consensus 87 ~~~~viieFPS~~aa~a~y~ 106 (143)
T 3hhl_A 87 WDHVFIAEYPSVAAFVEMIR 106 (143)
T ss_dssp CSEEEEEEESCHHHHHHHHH
T ss_pred CCeEEEEECCCHHHHHHHHc
Confidence 45689999999999888754
No 496
>4af8_A Metacaspase MCA2; hydrolase, cysteine peptidase, caspase/hemoglobin fold; 1.40A {Trypanosoma brucei} PDB: 4afp_A 4afv_A 4afr_A
Probab=20.32 E-value=3.2e+02 Score=24.47 Aligned_cols=62 Identities=13% Similarity=0.101 Sum_probs=34.5
Q ss_pred CCCcceEEEcCCCCC--------C-CHHHHHHHHhccC-CeEEEEEeecCCCCCcceEEEEEeCChHHHHHHHHhc
Q 021295 53 DFKTKKIFVGGIPSS--------V-NEDEFKDFFMQFG-DVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKG 118 (314)
Q Consensus 53 ~~~~~~l~V~nLp~~--------~-~e~~l~~~F~~~G-~v~~v~i~~~~~~g~~rG~afV~F~~~~~a~~a~~~l 118 (314)
....+.|.|+.=.+. + +.+.|+++|.+++ ++++|.|+.|.... +. ...-.+.+.+.+||++|
T Consensus 90 ~grr~ALlIGIn~Y~~~~~L~g~vnDA~~m~~~L~~~GF~~~~i~~L~D~~~~-p~---~~~~pTr~nI~~aL~~L 161 (367)
T 4af8_A 90 GQTVRALFIGINYYGTSAALSGCCNDVKQMLATLQKRGLPINEAVILVDEDNF-PG---RTDQPTRDNIVRYMAWL 161 (367)
T ss_dssp TCCEEEEEEECCCTTSTTCCSSHHHHHHHHHHHHHHTTCCCSEEEEEECCTTC-TT---CCBCCCHHHHHHHHHHH
T ss_pred CCCeEEEEEEeCCCCCccCCCCHHHHHHHHHHHHHHcCCCchheEEecccccc-cc---cccCCCHHHHHHHHHHH
Confidence 334456666653332 1 2255677888887 45678888774321 10 12334667777777754
No 497
>2e5p_A Protein PHF1, PHD finger protein 1; tudor domain, PHF1 protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=20.30 E-value=33 Score=22.79 Aligned_cols=11 Identities=18% Similarity=0.591 Sum_probs=8.8
Q ss_pred ceEEEEEeCCh
Q 021295 98 RGFGFITFDTE 108 (314)
Q Consensus 98 rG~afV~F~~~ 108 (314)
+..|+|.|+|.
T Consensus 37 ~~~ClV~FeD~ 47 (68)
T 2e5p_A 37 REVCLVQFEDD 47 (68)
T ss_dssp TTEEEEEETTT
T ss_pred CcEEEEEEccC
Confidence 44899999884
No 498
>2kkh_A Putative heavy metal transporter; zinc transport, metal binding, metal selectivity, ferredoxin fold, ATP-binding, hydrolase; NMR {Arabidopsis thaliana}
Probab=20.18 E-value=2e+02 Score=19.20 Aligned_cols=57 Identities=12% Similarity=0.135 Sum_probs=39.8
Q ss_pred cceEEEcCCCCCCCHHHHHHHHhccCCeEEEEEeecCCCCCcceEEEEEeCC----hHHHHHHHHhc
Q 021295 56 TKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDT----EQAVDDLLAKG 118 (314)
Q Consensus 56 ~~~l~V~nLp~~~~e~~l~~~F~~~G~v~~v~i~~~~~~g~~rG~afV~F~~----~~~a~~a~~~l 118 (314)
..+|.|.++.-......|+..+.+.--|..+.+-.. ...+.|+|.. .+.+.++|+.+
T Consensus 17 ~~~~~v~gm~C~~C~~~ie~~l~~~~GV~~~~v~~~------~~~~~v~~~~~~~~~~~i~~~i~~~ 77 (95)
T 2kkh_A 17 KSYFDVLGICCTSEVPIIENILKSLDGVKEYSVIVP------SRTVIVVHDSLLISPFQIAKALNEA 77 (95)
T ss_dssp EEEEEETTCCTTTTHHHHHHHHHHSSSEEEEEEETT------TTEEEEEECTTTCCHHHHHHHHHHH
T ss_pred EEEEEECCcCCHHHHHHHHHHHhcCCCeeEEEEEcc------CCEEEEEECCCCCCHHHHHHHHHHc
Confidence 346778888777778889999988877877776543 2367888864 34556666653
No 499
>2pn6_A ST1022, 150AA long hypothetical transcriptional regulator; LRP/ASNC family Gln binding, structural genomics, NPPSFA; HET: GLN; 1.44A {Sulfolobus tokodaii} PDB: 2efn_A* 2e7x_A* 2e7w_A* 2yx4_A* 2efq_A* 2pmh_A* 2yx7_A* 2efp_A* 2efo_A*
Probab=20.15 E-value=2.5e+02 Score=20.90 Aligned_cols=49 Identities=8% Similarity=-0.002 Sum_probs=37.8
Q ss_pred CCHHHHHHHHhccCCeEEEEEeecCCCCCcceEEEEEeCChHHHHHHH-HhcCC
Q 021295 68 VNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLL-AKGNK 120 (314)
Q Consensus 68 ~~e~~l~~~F~~~G~v~~v~i~~~~~~g~~rG~afV~F~~~~~a~~a~-~~l~~ 120 (314)
...+++.+.+.++-+|..+..+ ++...=++.|...+.+++++.+ +.+..
T Consensus 76 ~~~~~~~~~l~~~p~V~~~~~~----tG~~d~~~~v~~~d~~~l~~~l~~~l~~ 125 (150)
T 2pn6_A 76 NYHVELGNKLAQIPGVWGVYFV----LGDNDFIVMARYKTREEFMEKFLERVMS 125 (150)
T ss_dssp THHHHHHHHHHTSTTEEEEEEC----SSSCSEEEEEEESSHHHHHHHTHHHHTT
T ss_pred hHHHHHHHHHhcCchhhhhhhh----cCcCCEEEEEEECCHHHHHHHHHHHhcc
Confidence 3457888889999999888875 3445557889999999999988 55544
No 500
>3h7h_B Transcription elongation factor SPT5; helices surrounding beta sheet, activator, ME binding, nucleus, repressor, transcription regulation; 1.55A {Homo sapiens}
Probab=20.08 E-value=86 Score=22.79 Aligned_cols=27 Identities=19% Similarity=0.313 Sum_probs=22.8
Q ss_pred CcccEEEEEECCHHHHHHHHHccCccC
Q 021295 8 QPRGFGFVTYADPSVVDKVIEDTHIIN 34 (314)
Q Consensus 8 ~~kG~aFV~f~~~~~a~~A~~~~~~i~ 34 (314)
..|||-|||=.++.++.+|++....+.
T Consensus 49 ~lkGyIyVEA~~~~~V~~ai~gi~~v~ 75 (106)
T 3h7h_B 49 HVKGYIYVEAYKQTHVKQAIEGVGNLR 75 (106)
T ss_dssp TCCSEEEEEESSHHHHHHHHTTCGGGG
T ss_pred CCceEEEEEeCCHHHHHHHHhccccee
Confidence 469999999999999999999655444
Done!