BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 021297
(314 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1TZA|A Chain A, X-Ray Structure Of Northeast Structural Genomics
Consortium Target Sor45
pdb|1TZA|B Chain B, X-Ray Structure Of Northeast Structural Genomics
Consortium Target Sor45
Length = 134
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 37/79 (46%), Gaps = 11/79 (13%)
Query: 221 AVTNGVKIRASAVFIPELADPESDTEKYLFAYSIRMSLLPEGCVINGMTFSSCQLQRRHW 280
A+ N +++ +I + + PE EKYLF+Y+I + L E + +L+ RHW
Sbjct: 3 ALDNSIRVEVKTEYIEQQSSPED--EKYLFSYTITIINLGE---------QAAKLETRHW 51
Query: 281 IIHAXXXXXXXXXGEAVIG 299
II G V+G
Sbjct: 52 IITDANGKTSEVQGAGVVG 70
>pdb|1XVS|A Chain A, Crystal Structure Of Apag Protein From Vibrio Cholerae
pdb|1XVS|B Chain B, Crystal Structure Of Apag Protein From Vibrio Cholerae
Length = 126
Score = 33.5 bits (75), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 19/74 (25%), Positives = 34/74 (45%), Gaps = 11/74 (14%)
Query: 226 VKIRASAVFIPELADPESDTEKYLFAYSIRMSLLPEGCVINGMTFSSCQLQRRHWIIHAX 285
+KI+ +I E ++PE ++++FAY I I ++ + QL R W+I
Sbjct: 8 IKIQVQTRYIEEQSNPEY--QRFVFAYLI---------TIKNLSSQTVQLXSRRWLITDA 56
Query: 286 XXXXXXXXGEAVIG 299
G+ V+G
Sbjct: 57 DGKQTVVEGDGVVG 70
>pdb|2F1E|A Chain A, Solution Structure Of Apag Protein
Length = 127
Score = 31.6 bits (70), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 32/80 (40%), Gaps = 12/80 (15%)
Query: 226 VKIRASAVFIPELADPESDTEKYLFAYSIRMSLLPEGCVINGMTFSSCQLQRRHWIIHAX 285
V++ S F+ + P D +Y FAYSIR I +L RHW I
Sbjct: 9 VEVEVSPRFLAHQSTP--DEGRYAFAYSIR---------IQNAGAVPARLVARHWQITDG 57
Query: 286 XXXXXXXXGEAVIG-MVWLK 304
GE V+G WL+
Sbjct: 58 NGRTEQVDGEGVVGEQPWLR 77
>pdb|1XFI|A Chain A, X-Ray Structure Of Gene Product From Arabidopsis Thaliana
At2g17340
pdb|2Q40|A Chain A, Ensemble Refinement Of The Protein Crystal Structure Of
Gene Product From Arabidopsis Thaliana At2g17340
Length = 367
Score = 28.9 bits (63), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 29/116 (25%), Positives = 48/116 (41%), Gaps = 22/116 (18%)
Query: 198 RLRDEENLKFINLFPEEPPLCSIAVTNGVKIR--ASAVFIPELADPESDTEKYLFAYSIR 255
+++DEEN K I+LFP+ L +G ++ +F + D S +F+
Sbjct: 122 KVKDEENAKAISLFPQVVSLSDAIEDDGKRLENLVRGIFAGNIFDLGSAQLAEVFSR--- 178
Query: 256 MSLLPEGCVINGMTF-SSCQ-LQRRHWIIHAXXXXXXXXXGEAVIGMVWLKLIVFI 309
+GM+F +SCQ L R W+I I W K ++F+
Sbjct: 179 ----------DGMSFLASCQNLVPRPWVIDDLENFQAKW-----INKSWKKAVIFV 219
>pdb|4H09|A Chain A, Crystal Structure Of A Hypothetical Leucine Rich Repeat
Protein (Eubven_01088) From Eubacterium Ventriosum Atcc
27560 At 2.50 A Resolution
pdb|4H09|B Chain B, Crystal Structure Of A Hypothetical Leucine Rich Repeat
Protein (Eubven_01088) From Eubacterium Ventriosum Atcc
27560 At 2.50 A Resolution
pdb|4H09|C Chain C, Crystal Structure Of A Hypothetical Leucine Rich Repeat
Protein (Eubven_01088) From Eubacterium Ventriosum Atcc
27560 At 2.50 A Resolution
pdb|4H09|D Chain D, Crystal Structure Of A Hypothetical Leucine Rich Repeat
Protein (Eubven_01088) From Eubacterium Ventriosum Atcc
27560 At 2.50 A Resolution
pdb|4H09|E Chain E, Crystal Structure Of A Hypothetical Leucine Rich Repeat
Protein (Eubven_01088) From Eubacterium Ventriosum Atcc
27560 At 2.50 A Resolution
Length = 379
Score = 28.5 bits (62), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 16/35 (45%), Positives = 17/35 (48%)
Query: 66 QECQTDDFESIGAMGLIGGYSFYGHLVNVYLIPLS 100
Q DDFE GA IG Y FY V +IP S
Sbjct: 111 QGTDLDDFEFPGATTEIGNYIFYNSSVKRIVIPKS 145
>pdb|3PIU|A Chain A, High-Resolution Structure Of Native Malus Domestica Acc
Synthase
Length = 410
Score = 27.7 bits (60), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 13/25 (52%), Positives = 18/25 (72%), Gaps = 1/25 (4%)
Query: 13 CWDRLKNWLAENFPEAKATLRKGAS 37
C+D L++WLA+N PEA A + G S
Sbjct: 34 CFDLLESWLAKN-PEAAAFKKNGES 57
>pdb|1M7Y|A Chain A, Crystal Structure Of Apple Acc Synthase In Complex With
L- Aminoethoxyvinylglycine
pdb|1M4N|A Chain A, Crystal Structure Of Apple Acc Synthase In Complex With
[2-(Amino-
Oxy)ethyl](5'-Deoxyadenosin-5'-Yl)(Methyl)sulfonium
Length = 435
Score = 27.7 bits (60), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 13/25 (52%), Positives = 18/25 (72%), Gaps = 1/25 (4%)
Query: 13 CWDRLKNWLAENFPEAKATLRKGAS 37
C+D L++WLA+N PEA A + G S
Sbjct: 51 CFDLLESWLAKN-PEAAAFKKNGES 74
>pdb|1B8G|A Chain A, 1-aminocyclopropane-1-carboxylate Synthase
pdb|1B8G|B Chain B, 1-aminocyclopropane-1-carboxylate Synthase
Length = 429
Score = 27.7 bits (60), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 13/25 (52%), Positives = 18/25 (72%), Gaps = 1/25 (4%)
Query: 13 CWDRLKNWLAENFPEAKATLRKGAS 37
C+D L++WLA+N PEA A + G S
Sbjct: 49 CFDLLESWLAKN-PEAAAFKKNGES 72
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.324 0.141 0.447
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,550,525
Number of Sequences: 62578
Number of extensions: 389558
Number of successful extensions: 1080
Number of sequences better than 100.0: 12
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 1078
Number of HSP's gapped (non-prelim): 12
length of query: 314
length of database: 14,973,337
effective HSP length: 99
effective length of query: 215
effective length of database: 8,778,115
effective search space: 1887294725
effective search space used: 1887294725
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 51 (24.3 bits)