Query 021297
Match_columns 314
No_of_seqs 255 out of 776
Neff 6.1
Searched_HMMs 46136
Date Fri Mar 29 09:08:31 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021297.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/021297hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4408 Putative Mg2+ and Co2+ 100.0 7.3E-46 1.6E-50 348.5 6.3 254 1-308 75-334 (386)
2 PRK05461 apaG CO2+/MG2+ efflux 100.0 5.9E-28 1.3E-32 202.8 10.9 79 219-308 2-84 (127)
3 COG2967 ApaG Uncharacterized p 99.9 2.1E-26 4.6E-31 188.1 9.2 78 220-308 2-83 (126)
4 COG4282 SMI1 Protein involved 99.9 6.5E-22 1.4E-26 170.7 14.5 174 5-203 2-186 (191)
5 PF04379 DUF525: Protein of un 99.9 2.5E-22 5.4E-27 159.5 8.0 63 235-308 1-67 (90)
6 PF09346 SMI1_KNR4: SMI1 / KNR 98.8 5.6E-09 1.2E-13 84.6 4.3 34 35-68 1-34 (130)
7 smart00860 SMI1_KNR4 SMI1 / KN 98.7 7.8E-08 1.7E-12 76.0 8.2 35 35-69 1-35 (129)
8 PF14568 SUKH_6: SMI1-KNR4 cel 98.2 5.3E-06 1.1E-10 67.1 8.4 31 38-68 1-31 (120)
9 PF14567 SUKH_5: SMI1-KNR4 cel 98.2 1.1E-05 2.3E-10 68.7 9.4 88 34-145 20-107 (132)
10 PF07348 Syd: Syd protein (SUK 91.3 1.3 2.7E-05 39.6 8.5 27 37-63 55-81 (176)
11 PRK04968 SecY interacting prot 87.7 4.5 9.8E-05 36.3 9.1 27 37-63 56-82 (181)
12 KOG0037 Ca2+-binding protein, 57.1 32 0.00069 31.9 6.1 53 7-60 113-165 (221)
13 PF11611 DUF4352: Domain of un 55.4 64 0.0014 25.6 7.2 61 220-291 6-70 (123)
14 PF13598 DUF4139: Domain of un 49.2 86 0.0019 29.6 8.1 81 191-278 181-265 (317)
15 PRK03643 altronate oxidoreduct 46.5 32 0.00069 35.3 4.9 46 6-51 182-233 (471)
16 PHA02688 ORF059 IMV protein VP 46.1 16 0.00035 35.6 2.5 28 8-35 249-277 (323)
17 PF08887 GAD-like: GAD-like do 41.9 1.9E+02 0.0042 23.6 8.4 87 17-132 4-90 (109)
18 PRK12449 acyl carrier protein; 41.1 77 0.0017 23.6 5.2 46 11-56 4-61 (80)
19 PF14263 DUF4354: Domain of un 39.9 1.3E+02 0.0027 25.5 6.7 63 220-293 21-83 (124)
20 CHL00124 acpP acyl carrier pro 39.2 74 0.0016 23.9 4.9 46 11-56 4-61 (82)
21 COG0246 MtlD Mannitol-1-phosph 38.9 51 0.0011 33.9 5.0 48 6-53 185-236 (473)
22 TIGR00517 acyl_carrier acyl ca 38.5 66 0.0014 23.8 4.5 46 11-56 2-59 (77)
23 PF11829 DUF3349: Protein of u 36.0 69 0.0015 25.9 4.4 39 10-48 1-48 (96)
24 PF03213 Pox_P35: Poxvirus P35 34.8 27 0.00059 34.0 2.2 25 11-35 255-279 (325)
25 PF05597 Phasin: Poly(hydroxya 30.8 1E+02 0.0022 26.3 4.8 41 7-48 78-118 (132)
26 PF08828 DSX_dimer: Doublesex 28.8 50 0.0011 24.5 2.2 18 2-19 19-47 (62)
27 PF08060 NOSIC: NOSIC (NUC001) 27.1 57 0.0012 23.1 2.2 28 7-34 13-40 (53)
28 PRK05350 acyl carrier protein; 23.2 2.1E+02 0.0045 21.6 5.0 45 11-55 5-61 (82)
29 PRK15037 D-mannonate oxidoredu 23.1 1.3E+02 0.0027 31.2 4.8 39 15-53 208-249 (486)
30 PRK07639 acyl carrier protein; 22.2 1.6E+02 0.0036 22.7 4.3 44 12-55 5-61 (86)
31 TIGR02336 1,3-beta-galactosyl- 21.6 1.6E+02 0.0035 31.8 5.2 46 9-55 187-258 (719)
32 TIGR02231 conserved hypothetic 21.2 4.9E+02 0.011 26.7 8.7 82 190-278 379-465 (525)
33 PF10691 DUF2497: Protein of u 21.1 51 0.0011 25.3 1.1 15 16-30 46-60 (73)
34 PRK05828 acyl carrier protein; 20.7 1.3E+02 0.0028 23.3 3.4 45 12-56 5-61 (84)
35 TIGR01837 PHA_granule_1 poly(h 20.2 1.8E+02 0.0039 24.0 4.3 37 11-48 69-105 (118)
36 PRK11032 hypothetical protein; 20.1 3E+02 0.0065 24.3 5.8 26 33-62 40-65 (160)
No 1
>KOG4408 consensus Putative Mg2+ and Co2+ transporter CorD [Inorganic ion transport and metabolism]
Probab=100.00 E-value=7.3e-46 Score=348.52 Aligned_cols=254 Identities=24% Similarity=0.324 Sum_probs=212.7
Q ss_pred CCCChhHHHHHHHHHH-HHHHHHhhChhhhhccCCCCCHHHHHHHHHHcCCCCCHHHHHHhhHhcCccCCCCCccccccc
Q 021297 1 MYPWPLVKRVKRCWDR-LKNWLAENFPEAKATLRKGASEADIQQLEKSLKVKLPVPTRILYRFCDGQECQTDDFESIGAM 79 (314)
Q Consensus 1 ~~~~~~~~~v~~~W~r-ie~wl~~~~P~~~~~L~~gase~~i~~~E~~Lg~~LP~~~r~~yr~hnGq~~~~~~~~~~~~~ 79 (314)
||||.++.+|.-.|.. ++.|...|.++.-++|+.||+++|++++|+.+|++||.++|++||.+|||... .+
T Consensus 75 h~~f~yvgvv~~~w~arlk~wd~ln~~~~~aal~ega~e~dl~a~e~s~~~kLp~~~r~~yrev~Gq~l~--------~y 146 (386)
T KOG4408|consen 75 HDTFGYVGVVLFPWAARLKDWDDLNKYLEPAALKEGAREPDLDAVEASIGCKLPDDYRCSYREVKGQTLT--------FY 146 (386)
T ss_pred eeecccceEEEEechHhhhhhhhcccccccchhhccCcccchhhhhhcccccCCCccccchhhcCCeEEe--------eh
Confidence 6899999999999987 99999999999999999999999999999999999999999999999999997 78
Q ss_pred ccccceeeccceeeeeccChhHHHHHHHHHHHhcCCCCCCceEEEEeccCCCCceEEEEecCCeeeeeeeeccCCCcccc
Q 021297 80 GLIGGYSFYGHLVNVYLIPLSHIIMETKEIRRHLDFPGRDKYVVVAFSSTYSEKFFFLNCTNGQLYVGTKNLLSDGEMIP 159 (314)
Q Consensus 80 GL~gg~~~y~~~~~~~LL~L~~i~~~~~~~r~~~~~~~~~~~~~v~~~~~~~~k~~~l~c~~g~~~vg~~~~~~~Ge~~p 159 (314)
|++|++..|+|++...+. ++... ..+++.+.++....++-.+..+...+.|+.++..-| ..|..+
T Consensus 147 qvLi~~~d~sH~~~ev~~-------e~~t~--~~nf~~r~~L~y~ipgld~v~hedilpyts~e~~~g------~heLf~ 211 (386)
T KOG4408|consen 147 QVLIDMRDCSHIRSEVQT-------EAVTF--LGNFDSRQGLKYAIPGLDYVSHEDILPYTSSEAVPG------QHELFD 211 (386)
T ss_pred heeeecccCccccchhhh-------hhhhh--hcCcccccchheecccceeEeecccccccccccccc------chhhhh
Confidence 999999999999733332 22211 136665555532223222334567788888875432 246888
Q ss_pred ccccceecccCCCCCccccchHHHHHHHHhhhhhcCcEEEecCCCceeeeecCCCCCceeEeeeCCeEEEEEeEEecCcC
Q 021297 160 CVPNALIALGHGCNSDQQQDGMLLWLEEHGRRLHNGIIRLRDEENLKFINLFPEEPPLCSIAVTNGVKIRASAVFIPELA 239 (314)
Q Consensus 160 cvp~~~i~~~~~~~~~~~~dsfl~WLee~~~~Le~G~~~v~~~~~~r~i~lfp~~~p~~~~~~T~gI~V~v~~~y~~e~s 239 (314)
|+|+ +....++.+.+..++.|++|+|+ ++ .|.+.+++ |+ .++|+||+|+|+|+|+|+.|
T Consensus 212 ~~pd-l~r~~~~~~~f~~q~tl~~W~e~--kn--~gwl~~~d------Vh----------~etTenI~Vtvstfylge~s 270 (386)
T KOG4408|consen 212 QFPD-LARDPAAIPPFVIQDTLTAWQES--KN--HGWLPIRD------VH----------RETTENIRVTVSTFYLGERS 270 (386)
T ss_pred hhhh-hhcCcccCCchhhhHHHHHHHhc--CC--CCCcChhh------CC----------hhhcCCeEEEEEEeeecccc
Confidence 9999 77777888889999999999998 55 88888883 43 38999999999999999999
Q ss_pred CCCCCCCceEEEEEEEEEeCCCccccCCCccccEEEeeeeEEEEeCCCceEeeecCcccccceEE-----EEEE
Q 021297 240 DPESDTEKYLFAYSIRMSLLPEGCVINGMTFSSCQLQRRHWIIHANNVVVSVVSGEAVIGMVWLK-----LIVF 308 (314)
Q Consensus 240 ~~~~~~~~y~f~Y~Iri~n~~~~~~~~~~~~~~~QL~sRhW~I~~~~g~~~~V~G~GVVG~~P~l-----~~~y 308 (314)
.. +++.|+|+|+|||+| +.+..+|||.+|||+|++.+|.+++|+|+||||++|+| .|+|
T Consensus 271 ~~--~pp~YwwrY~IRien--------~l~e~svQLreRhWrI~slng~le~V~G~gVVGk~PiLs~g~paFqY 334 (386)
T KOG4408|consen 271 SV--HPPVYWWRYCIRIEN--------ALPEKSVQLRERHWRIFSLNGTLETVRGRGVVGKEPILSAGRPAFQY 334 (386)
T ss_pred cC--CCCceEEEEEEEeec--------CCCCcceEEeEeeEEEEecccchhhccccceeccccccCCCCcceEE
Confidence 99 499999999999998 33459999999999999999999999999999999999 6777
No 2
>PRK05461 apaG CO2+/MG2+ efflux protein ApaG; Reviewed
Probab=99.95 E-value=5.9e-28 Score=202.84 Aligned_cols=79 Identities=34% Similarity=0.562 Sum_probs=75.4
Q ss_pred eEeeeCCeEEEEEeEEecCcCCCCCCCCceEEEEEEEEEeCCCccccCCCccccEEEeeeeEEEEeCCCceEeeecCccc
Q 021297 219 SIAVTNGVKIRASAVFIPELADPESDTEKYLFAYSIRMSLLPEGCVINGMTFSSCQLQRRHWIIHANNVVVSVVSGEAVI 298 (314)
Q Consensus 219 ~~~~T~gI~V~v~~~y~~e~s~~~~~~~~y~f~Y~Iri~n~~~~~~~~~~~~~~~QL~sRhW~I~~~~g~~~~V~G~GVV 298 (314)
++++|+||+|+|+|.|+||+|++. +++|+|+|+|||+| .++ .+|||++|||+|+|++|++++|+|+|||
T Consensus 2 ~~~~t~gI~V~V~~~y~~e~S~p~--~~~y~f~Y~ItI~N-------~~~--~~vQL~~R~W~I~d~~g~~~~V~G~GVV 70 (127)
T PRK05461 2 YSAVTYGIEVSVQPRYLEEQSDPE--EGRYVFAYTITIEN-------LGR--VPVQLLSRHWLITDANGRVQEVRGEGVV 70 (127)
T ss_pred cccccCCEEEEEEEEECcccCCCc--CCEEEEEEEEEEEE-------CCC--CCEEEEeeeEEEEECCCCEEEEECCcee
Confidence 468999999999999999999995 99999999999999 777 9999999999999999999999999999
Q ss_pred ccceEE----EEEE
Q 021297 299 GMVWLK----LIVF 308 (314)
Q Consensus 299 G~~P~l----~~~y 308 (314)
|+||+| .|.|
T Consensus 71 G~qP~L~PGe~F~Y 84 (127)
T PRK05461 71 GEQPVLAPGESFEY 84 (127)
T ss_pred cCCceECCCCCeEE
Confidence 999999 8888
No 3
>COG2967 ApaG Uncharacterized protein affecting Mg2+/Co2+ transport [Inorganic ion transport and metabolism]
Probab=99.93 E-value=2.1e-26 Score=188.11 Aligned_cols=78 Identities=29% Similarity=0.525 Sum_probs=74.4
Q ss_pred EeeeCCeEEEEEeEEecCcCCCCCCCCceEEEEEEEEEeCCCccccCCCccccEEEeeeeEEEEeCCCceEeeecCcccc
Q 021297 220 IAVTNGVKIRASAVFIPELADPESDTEKYLFAYSIRMSLLPEGCVINGMTFSSCQLQRRHWIIHANNVVVSVVSGEAVIG 299 (314)
Q Consensus 220 ~~~T~gI~V~v~~~y~~e~s~~~~~~~~y~f~Y~Iri~n~~~~~~~~~~~~~~~QL~sRhW~I~~~~g~~~~V~G~GVVG 299 (314)
.+.|..|+|+|.+.|++++|+|+ +.+|+|+|+|+|+| +|. .++||++|||.|||+||++++|.|+||||
T Consensus 2 ~~~~~~I~V~V~~~yleeQS~P~--~~RyvfaYtitI~N-------~g~--~~vqLlsR~W~ITd~~g~v~eV~G~GVVG 70 (126)
T COG2967 2 MASSPDIEVQVQPRYLEEQSSPE--EERYVFAYTVTIRN-------LGE--VPVQLLSRYWLITDGNGRVTEVEGEGVVG 70 (126)
T ss_pred CcccCceEEEEeeEEccccCCcc--cceEEEEEEEEEec-------CCC--ccceeeeeEEEEecCCCcEEEEEcCceec
Confidence 46789999999999999999996 89999999999999 888 99999999999999999999999999999
Q ss_pred cceEE----EEEE
Q 021297 300 MVWLK----LIVF 308 (314)
Q Consensus 300 ~~P~l----~~~y 308 (314)
+||+| +|-|
T Consensus 71 eQP~l~PG~~y~Y 83 (126)
T COG2967 71 EQPLLAPGEEYQY 83 (126)
T ss_pred cccccCCCCceEE
Confidence 99999 7777
No 4
>COG4282 SMI1 Protein involved in beta-1,3-glucan synthesis [Carbohydrate transport and metabolism]
Probab=99.88 E-value=6.5e-22 Score=170.66 Aligned_cols=174 Identities=21% Similarity=0.253 Sum_probs=142.3
Q ss_pred hhHHHHHHHHHHHHHHHHhhChhhhhccCCCCCHHHHHHHHHHcCCCCCHHHHHHhhHhcCccCCCCCcccccccccccc
Q 021297 5 PLVKRVKRCWDRLKNWLAENFPEAKATLRKGASEADIQQLEKSLKVKLPVPTRILYRFCDGQECQTDDFESIGAMGLIGG 84 (314)
Q Consensus 5 ~~~~~v~~~W~rie~wl~~~~P~~~~~L~~gase~~i~~~E~~Lg~~LP~~~r~~yr~hnGq~~~~~~~~~~~~~GL~gg 84 (314)
|.+..+..+|+||+.|.++|.|++...|+||||.++|+.+|++||++||+++|++|.+||||...+ ...|
T Consensus 2 ~~~se~slawrrId~W~aeh~pdl~~~l~pgat~~di~~aE~dlg~tlPpdvResl~iHDGq~dgs------~ptg---- 71 (191)
T COG4282 2 PNQSEPSLAWRRIDTWVAEHHPDLLPFLRPGATCGDIQRAEADLGRTLPPDVRESLAIHDGQPDGS------PPTG---- 71 (191)
T ss_pred CCCchHHHHHHHHHHHHHhcCcccccccCCCccHHHHHHHHHHhcCcCChHHHHHHHhhCCCcCCC------Cccc----
Confidence 456778899999999999999999999999999999999999999999999999999999999874 2223
Q ss_pred eeeccceeeeeccChhHHHHHHHHHHHhcC----CCCC----Cc-eEEEEeccCCCCceEEEEecCCeeeeeeeeccCC-
Q 021297 85 YSFYGHLVNVYLIPLSHIIMETKEIRRHLD----FPGR----DK-YVVVAFSSTYSEKFFFLNCTNGQLYVGTKNLLSD- 154 (314)
Q Consensus 85 ~~~y~~~~~~~LL~L~~i~~~~~~~r~~~~----~~~~----~~-~~~v~~~~~~~~k~~~l~c~~g~~~vg~~~~~~~- 154 (314)
.||.|+++..+++-||+.+. +.+. .+ .--+.+..++++.|++|.-+.+++.++++.-|..
T Consensus 72 ----------~ll~le~~~~~~~aWrdlaq~~~T~~G~~s~~e~s~~sfppgvywhPaWIPL~~d~~Gnhi~IDLaPgp~ 141 (191)
T COG4282 72 ----------LLLRLEPLDLELIAWRDLAQRDGTYGGEVSPSEGSGRSFPPGVYWHPAWIPLFGDPRGNHICIDLAPGPT 141 (191)
T ss_pred ----------chhhhHHHHHHHHHHHHHHHhcCCcCCcccccccccccCCCCccccCceeeecccCCCCeEEEecCCCCC
Confidence 68999999999999998754 2110 00 0112223345788999999999988888877644
Q ss_pred CccccccccceecccCCCC-CccccchHHHHHHHHhhhhhcCcEEEecCC
Q 021297 155 GEMIPCVPNALIALGHGCN-SDQQQDGMLLWLEEHGRRLHNGIIRLRDEE 203 (314)
Q Consensus 155 Ge~~pcvp~~~i~~~~~~~-~~~~~dsfl~WLee~~~~Le~G~~~v~~~~ 203 (314)
|. -+|+|-|++|.+ +...+-|+.++|...+..+++|+.-+.++.
T Consensus 142 g~-----ygQiI~FgrD~dtk~vVa~swaefls~~And~e~g~wllddd~ 186 (191)
T COG4282 142 GG-----YGQIIWFGRDEDTKPVVAQSWAEFLSRIANDVETGRWLLDDDY 186 (191)
T ss_pred CC-----cceEEEeccccccCeehhccHHHHHHHHHhHHhhcceecccCc
Confidence 33 579999999966 468999999999999999999997777664
No 5
>PF04379 DUF525: Protein of unknown function (DUF525); InterPro: IPR007474 This domain is found in the bacterial protein ApaG and at the C termini of some F-box proteins (IPR001810 from INTERPRO). F-box proteins contain a carboxy-terminal domain that interacts with protein substrates []. The ApaG domain is ~125 amino acids in length, and is named after the bacterial ApaG protein, of which it forms the core. The Salmonella typhimurium ApaG domain protein, CorD, is involved in Co(2+) resistance and Mg(2+) efflux. Tertiary structures from different ApaG proteins show a fold of several beta-sheets. The ApaG domain may be involved in protein-protein interactions which could be implicated in substrate-specificity [, , ].; PDB: 2F1E_A 1XVS_A 1TZA_A 1XQ4_D.
Probab=99.87 E-value=2.5e-22 Score=159.50 Aligned_cols=63 Identities=38% Similarity=0.652 Sum_probs=53.2
Q ss_pred ecCcCCCCCCCCceEEEEEEEEEeCCCccccCCCccccEEEeeeeEEEEeCCCceEeeecCcccccceEE----EEEE
Q 021297 235 IPELADPESDTEKYLFAYSIRMSLLPEGCVINGMTFSSCQLQRRHWIIHANNVVVSVVSGEAVIGMVWLK----LIVF 308 (314)
Q Consensus 235 ~~e~s~~~~~~~~y~f~Y~Iri~n~~~~~~~~~~~~~~~QL~sRhW~I~~~~g~~~~V~G~GVVG~~P~l----~~~y 308 (314)
+||+|++. +.+|+|+|+|||+| .++ .+|||++|||+|+|++|++++|+|+||||++|+| .|.|
T Consensus 1 ~~e~S~p~--~~~y~f~Y~I~I~N-------~~~--~~vqL~sR~W~I~d~~g~~~~V~G~GVVG~~P~L~pGe~f~Y 67 (90)
T PF04379_consen 1 VPEQSDPS--QNRYVFAYRIRIEN-------HSD--ESVQLLSRHWIITDADGHVEEVEGEGVVGQQPVLAPGESFEY 67 (90)
T ss_dssp -GGG-BGG--GTBEEEEEEEEEEE--------SS--S-EEEEEEEEEEEETTS-EEEEEEESBTTB--EE-TTEEEEE
T ss_pred CccccCCC--CCeEEEEEEEEEEE-------CCC--CCEEEEccEEEEEeCCCCEEEEECCceEccCceECCCCcEEE
Confidence 68999996 89999999999999 677 7999999999999999999999999999999999 7777
No 6
>PF09346 SMI1_KNR4: SMI1 / KNR4 family (SUKH-1); InterPro: IPR018958 Proteins in this family are involved in the regulation of 1,3-beta-glucan synthase activity and cell-wall formation [, ]. Yeast members of this family are involved in the regulation of cell wall assembly. Saccharomyces cerevisiae (Baker's yeast) protein KNR4 (SMI1) has a regulatory role in chitin deposition and in cell wall assembly []. It was originally identified as a regulator of chitin synthase expression (acting as a repressor) [] and of 1,3-beta-glucan synthase levels []. It was shown to localise in patches at presumptive bud sites in unbudded cells and at the incipient bud site during bud emergence []. KNR4 is believed to connect the PKC1-SLT2 MAPK pathway with cell proliferation. It has been shown to interact with BCK2, a gene involved in cell cycle progression in S. cerevisiae (forming a complex) to allow PKC1 to coordinate the cell cycle (cell proliferation) with cell wall integrity [, ]. PKC1 plays an essential role in cell wall integrity and cell proliferation through a bifurcated PKC1/mitogen-activated protein (MAP) kinase pathway. KNR4 also interacts with the tyrosine-tRNA synthetase protein encoded by TYS1 and is involved in sporulation process []. Note: previously reported evidence that KNR4 may interact with nuclear matrix-association region [] may be due to an artefact [].; PDB: 3D5P_A 2ICG_A.
Probab=98.78 E-value=5.6e-09 Score=84.59 Aligned_cols=34 Identities=29% Similarity=0.395 Sum_probs=21.0
Q ss_pred CCCHHHHHHHHHHcCCCCCHHHHHHhhHhcCccC
Q 021297 35 GASEADIQQLEKSLKVKLPVPTRILYRFCDGQEC 68 (314)
Q Consensus 35 gase~~i~~~E~~Lg~~LP~~~r~~yr~hnGq~~ 68 (314)
|||+++|+++|++||++||++||+||+.|++...
T Consensus 1 p~t~~~I~~~E~~lg~~LP~~yk~fl~~~~~~~~ 34 (130)
T PF09346_consen 1 PATEEEIQELEEKLGVRLPDDYKEFLKEHNNGGI 34 (130)
T ss_dssp ---HHHHHHHHHHHTS---HHHHHHHH-------
T ss_pred CCCHHHHHHHHHHhCCCCcHHHHHHHHhhccccc
Confidence 7999999999999999999999999998744444
No 7
>smart00860 SMI1_KNR4 SMI1 / KNR4 family. Proteins in this family are involved in the regulation of 1,3-beta-glucan synthase activity and cell-wall formation.
Probab=98.69 E-value=7.8e-08 Score=76.00 Aligned_cols=35 Identities=37% Similarity=0.490 Sum_probs=33.3
Q ss_pred CCCHHHHHHHHHHcCCCCCHHHHHHhhHhcCccCC
Q 021297 35 GASEADIQQLEKSLKVKLPVPTRILYRFCDGQECQ 69 (314)
Q Consensus 35 gase~~i~~~E~~Lg~~LP~~~r~~yr~hnGq~~~ 69 (314)
|+|+++|+++|++||++||++||+||+.|||....
T Consensus 1 ~~s~~~i~~~e~~lg~~LP~~y~~f~~~~~g~~~~ 35 (129)
T smart00860 1 PASEEEIAELEKKLGIKLPEDYKEFLLLHNGGELG 35 (129)
T ss_pred CCCHHHHHHHHHHHCCCCCHHHHHHHHHcCCEEeC
Confidence 68999999999999999999999999999998775
No 8
>PF14568 SUKH_6: SMI1-KNR4 cell-wall; PDB: 2PRV_A.
Probab=98.25 E-value=5.3e-06 Score=67.07 Aligned_cols=31 Identities=32% Similarity=0.438 Sum_probs=24.3
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHhhHhcCccC
Q 021297 38 EADIQQLEKSLKVKLPVPTRILYRFCDGQEC 68 (314)
Q Consensus 38 e~~i~~~E~~Lg~~LP~~~r~~yr~hnGq~~ 68 (314)
|++|+++|++||++||.+||.+++.+||-..
T Consensus 1 ee~I~~~E~~Lg~~lP~~Yk~fL~~~~gg~~ 31 (120)
T PF14568_consen 1 EEEIEEAEKKLGVKLPEDYKEFLKEYNGGYF 31 (120)
T ss_dssp -HHHHHHHHHHTS---HHHHHHHHHC-SEEE
T ss_pred ChHHHHHHHHhCCCCCHHHHHHHHHcCCEEE
Confidence 6899999999999999999999999988764
No 9
>PF14567 SUKH_5: SMI1-KNR4 cell-wall; PDB: 2PAG_A.
Probab=98.20 E-value=1.1e-05 Score=68.67 Aligned_cols=88 Identities=15% Similarity=0.211 Sum_probs=47.7
Q ss_pred CCCCHHHHHHHHHHcCCCCCHHHHHHhhHhcCccCCCCCcccccccccccceeeccceeeeeccChhHHHHHHHHHHHhc
Q 021297 34 KGASEADIQQLEKSLKVKLPVPTRILYRFCDGQECQTDDFESIGAMGLIGGYSFYGHLVNVYLIPLSHIIMETKEIRRHL 113 (314)
Q Consensus 34 ~gase~~i~~~E~~Lg~~LP~~~r~~yr~hnGq~~~~~~~~~~~~~GL~gg~~~y~~~~~~~LL~L~~i~~~~~~~r~~~ 113 (314)
.++++++|.++|++||++||++||++++.. +..++|+.+.+.-.. .--++. +.+.++..|+ .
T Consensus 20 ~lpd~e~I~~~Ee~L~i~lP~eyk~fL~~~--------------s~v~~G~~E~~~i~~--~~s~~~-l~e~~~~ar~-~ 81 (132)
T PF14567_consen 20 ELPDDEQIVEAEEQLGISLPEEYKEFLLEA--------------SDVIYGGLEPVGIGD--PPSHTY-LPEVTADARS-I 81 (132)
T ss_dssp ----HHHHHHHHHHHT----HHHHHHHHHH--------------TT--BTTB-B-BSS---TTSTTB-HHHHHHHHHH-H
T ss_pred CCCCHHHHHHHHHHHCCCCCHHHHHHHHHC--------------CCeeecceEEEEEEc--CCCccc-HHHHHHHHHH-c
Confidence 468999999999999999999999999988 334455543322111 111111 5556666666 7
Q ss_pred CCCCCCceEEEEeccCCCCceEEEEecCCeee
Q 021297 114 DFPGRDKYVVVAFSSTYSEKFFFLNCTNGQLY 145 (314)
Q Consensus 114 ~~~~~~~~~~v~~~~~~~~k~~~l~c~~g~~~ 145 (314)
+++ ..+++++.. ++.|++++ .+|++.
T Consensus 82 glP--~~~ipice~---~~~yYcl~-~~g~V~ 107 (132)
T PF14567_consen 82 GLP--RELIPICED---GGDYYCLD-QEGEVV 107 (132)
T ss_dssp T----TTSEEEEEE---TTEEEEE--TTS-EE
T ss_pred CCC--hhheeEEec---CCcEEEEe-CCCeEE
Confidence 776 557777666 36778888 555543
No 10
>PF07348 Syd: Syd protein (SUKH-2); InterPro: IPR009948 This family contains a number of bacterial Syd proteins approximately 180 residues long. It has been suggested that Syd is loosely associated with the cytoplasmic surface of the cytoplasmic membrane, and that interaction with SecY may be involved in this membrane association [].; GO: 0009898 internal side of plasma membrane; PDB: 3FFV_B.
Probab=91.35 E-value=1.3 Score=39.65 Aligned_cols=27 Identities=22% Similarity=0.412 Sum_probs=17.9
Q ss_pred CHHHHHHHHHHcCCCCCHHHHHHhhHh
Q 021297 37 SEADIQQLEKSLKVKLPVPTRILYRFC 63 (314)
Q Consensus 37 se~~i~~~E~~Lg~~LP~~~r~~yr~h 63 (314)
...++..+|+.|+++|.++++++|--+
T Consensus 55 ~~~~f~~vE~aLei~lh~~i~~fy~~~ 81 (176)
T PF07348_consen 55 EAADFSNVERALEIQLHPDIHAFYGSY 81 (176)
T ss_dssp S-SS-HHHHHHCT----HHHHHHCCSE
T ss_pred CccCHHHHHHHhCCcccHHHHHHHhhh
Confidence 357899999999999999999999433
No 11
>PRK04968 SecY interacting protein Syd; Provisional
Probab=87.66 E-value=4.5 Score=36.31 Aligned_cols=27 Identities=19% Similarity=0.388 Sum_probs=24.1
Q ss_pred CHHHHHHHHHHcCCCCCHHHHHHhhHh
Q 021297 37 SEADIQQLEKSLKVKLPVPTRILYRFC 63 (314)
Q Consensus 37 se~~i~~~E~~Lg~~LP~~~r~~yr~h 63 (314)
.+.++..+|+.|+++|.++++++|--+
T Consensus 56 ~~~~f~~vE~aLei~lh~~I~~fy~s~ 82 (181)
T PRK04968 56 PEGNFNNVERALEITLHPDIHAFYTTQ 82 (181)
T ss_pred CcccHHHHHHhhcCeecHHHHHHHhhh
Confidence 567899999999999999999999554
No 12
>KOG0037 consensus Ca2+-binding protein, EF-Hand protein superfamily [Signal transduction mechanisms]
Probab=57.10 E-value=32 Score=31.86 Aligned_cols=53 Identities=15% Similarity=0.203 Sum_probs=40.6
Q ss_pred HHHHHHHHHHHHHHHHhhChhhhhccCCCCCHHHHHHHHHHcCCCCCHHHHHHh
Q 021297 7 VKRVKRCWDRLKNWLAENFPEAKATLRKGASEADIQQLEKSLKVKLPVPTRILY 60 (314)
Q Consensus 7 ~~~v~~~W~rie~wl~~~~P~~~~~L~~gase~~i~~~E~~Lg~~LP~~~r~~y 60 (314)
.+..+.+|..|..|-+-. -.....=..-++..||..+=..+|+.||+.+-.++
T Consensus 113 f~EF~~Lw~~i~~Wr~vF-~~~D~D~SG~I~~sEL~~Al~~~Gy~Lspq~~~~l 165 (221)
T KOG0037|consen 113 FKEFKALWKYINQWRNVF-RTYDRDRSGTIDSSELRQALTQLGYRLSPQFYNLL 165 (221)
T ss_pred HHHHHHHHHHHHHHHHHH-HhcccCCCCcccHHHHHHHHHHcCcCCCHHHHHHH
Confidence 467889999999997644 32332334456889999999999999999987765
No 13
>PF11611 DUF4352: Domain of unknown function (DUF4352); InterPro: IPR021652 This entry is represented by Bacteriophage A118, Gp32. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This entry represents a group of putative lipoproteins of unknown function.; PDB: 3CFU_A.
Probab=55.39 E-value=64 Score=25.62 Aligned_cols=61 Identities=8% Similarity=0.140 Sum_probs=37.6
Q ss_pred EeeeCCeEEEEEeE-EecC---cCCCCCCCCceEEEEEEEEEeCCCccccCCCccccEEEeeeeEEEEeCCCceEe
Q 021297 220 IAVTNGVKIRASAV-FIPE---LADPESDTEKYLFAYSIRMSLLPEGCVINGMTFSSCQLQRRHWIIHANNVVVSV 291 (314)
Q Consensus 220 ~~~T~gI~V~v~~~-y~~e---~s~~~~~~~~y~f~Y~Iri~n~~~~~~~~~~~~~~~QL~sRhW~I~~~~g~~~~ 291 (314)
+..+++++|+|..+ +... ...+ .....+..=+++|+| .+. ++..+..-++.+.|.+|..-+
T Consensus 6 ~~~~~~~~vtV~~v~~~~~~~~~~~~--~~g~~fv~v~v~v~N-------~~~--~~~~~~~~~f~l~d~~g~~~~ 70 (123)
T PF11611_consen 6 TVSVGGIEVTVNSVEKTDGSNEYSKP--KEGNKFVVVDVTVKN-------NGD--EPLDFSPSDFKLYDSDGNKYD 70 (123)
T ss_dssp EEEETTEEEEEEEE-EEE-SS-BEES-----SEEEEEEEEEEE--------SS--S-EEEEGGGEEEE-TT--B--
T ss_pred EEEECCEEEEEEEEEeecCCcccccc--CCCCEEEEEEEEEEE-------CCC--CcEEecccceEEEeCCCCEEc
Confidence 34578999999888 3322 1222 244566788899998 677 888898889999998876554
No 14
>PF13598 DUF4139: Domain of unknown function (DUF4139)
Probab=49.18 E-value=86 Score=29.64 Aligned_cols=81 Identities=14% Similarity=0.151 Sum_probs=47.1
Q ss_pred hhhcCcEEEecCCCceeeeecCCCCCc----eeEeeeCCeEEEEEeEEecCcCCCCCCCCceEEEEEEEEEeCCCccccC
Q 021297 191 RLHNGIIRLRDEENLKFINLFPEEPPL----CSIAVTNGVKIRASAVFIPELADPESDTEKYLFAYSIRMSLLPEGCVIN 266 (314)
Q Consensus 191 ~Le~G~~~v~~~~~~r~i~lfp~~~p~----~~~~~T~gI~V~v~~~y~~e~s~~~~~~~~y~f~Y~Iri~n~~~~~~~~ 266 (314)
.|..|...|-.++.+=.-+.++..+++ |+-.+-.+|+|+-...--.+....-....++-++|+|+|+| .
T Consensus 181 ~L~~G~~~v~~dg~~vG~~~l~~~~~ge~~~l~~G~d~~v~v~r~~~~~~~~~g~~~~~~~~~~~~~itv~N-------~ 253 (317)
T PF13598_consen 181 PLLPGPVSVYRDGTFVGESRLPHTAPGEEFELSFGVDPDVRVERKLLKKEEERGFFGKSQRRTYEYTITVRN-------N 253 (317)
T ss_pred cccCCcEEEEECCEEEEeeecCCCCCCCEEEEEcccCCCEEEEEEecceecccccccccEEEEEEEEEEEEC-------C
Confidence 456677666666654444555554444 44455567777766554322222212356888999999999 3
Q ss_pred CCccccEEEeee
Q 021297 267 GMTFSSCQLQRR 278 (314)
Q Consensus 267 ~~~~~~~QL~sR 278 (314)
.+.-..|++..|
T Consensus 254 ~~~~v~v~v~d~ 265 (317)
T PF13598_consen 254 KDEPVTVTVEDQ 265 (317)
T ss_pred CCCCEEEEEEeC
Confidence 442255666655
No 15
>PRK03643 altronate oxidoreductase; Provisional
Probab=46.47 E-value=32 Score=35.28 Aligned_cols=46 Identities=24% Similarity=0.466 Sum_probs=38.3
Q ss_pred hHHHHHHHH---HHHHHHHHhh--Chh-hhhccCCCCCHHHHHHHHHHcCCC
Q 021297 6 LVKRVKRCW---DRLKNWLAEN--FPE-AKATLRKGASEADIQQLEKSLKVK 51 (314)
Q Consensus 6 ~~~~v~~~W---~rie~wl~~~--~P~-~~~~L~~gase~~i~~~E~~Lg~~ 51 (314)
.|.+.++.| ..+.+|+++| ||. +.+...|+.++++++++++++|+.
T Consensus 182 ~Vl~~a~~~~l~~~~~~Wi~~~v~FpnsmVDRIvP~~~~~~~~~~~~~~G~~ 233 (471)
T PRK03643 182 IVLRYAQEWNLPEAFIQWLEEANTFCSTLVDRIVTGYPRDEAAALEEELGYE 233 (471)
T ss_pred HHHHHHHhccCCHHHHHHHHhcCCCCCcceecCCCCCChHHHHHHHHHhCCC
Confidence 345666778 8899999998 565 458899999999999999999985
No 16
>PHA02688 ORF059 IMV protein VP55; Provisional
Probab=46.10 E-value=16 Score=35.57 Aligned_cols=28 Identities=32% Similarity=0.650 Sum_probs=22.9
Q ss_pred HHH-HHHHHHHHHHHHhhChhhhhccCCC
Q 021297 8 KRV-KRCWDRLKNWLAENFPEAKATLRKG 35 (314)
Q Consensus 8 ~~v-~~~W~rie~wl~~~~P~~~~~L~~g 35 (314)
+.+ ...|.||.+||+.|+|.....|.-|
T Consensus 249 ~~~~~~lwsrl~~Wla~~~P~~~y~lttP 277 (323)
T PHA02688 249 KEMKNSLWSRLGTWLAKRYPGFYYFLTTP 277 (323)
T ss_pred hhhhhhHHHHHHHHHHhhCCchheeecch
Confidence 344 5679999999999999988776655
No 17
>PF08887 GAD-like: GAD-like domain; InterPro: IPR014983 This domain is functionally uncharacterised, but it appears to be distantly related to the GAD domain IPR004115 from INTERPRO.
Probab=41.87 E-value=1.9e+02 Score=23.63 Aligned_cols=87 Identities=20% Similarity=0.232 Sum_probs=51.1
Q ss_pred HHHHHHhhChhhhhccCCCCCHHHHHHHHHHcCCCCCHHHHHHhhHhcCccCCCCCcccccccccccceeeccceeeeec
Q 021297 17 LKNWLAENFPEAKATLRKGASEADIQQLEKSLKVKLPVPTRILYRFCDGQECQTDDFESIGAMGLIGGYSFYGHLVNVYL 96 (314)
Q Consensus 17 ie~wl~~~~P~~~~~L~~gase~~i~~~E~~Lg~~LP~~~r~~yr~hnGq~~~~~~~~~~~~~GL~gg~~~y~~~~~~~L 96 (314)
++.+|++.-|... ...+.++.|+ ++.=+||+.+-.+++-| +-.+...|+ ..+
T Consensus 4 ~e~fle~fg~~~~---~~~vp~~~I~----kyk~~lP~~Ll~~W~~~-------------G~g~~~dG~--------f~~ 55 (109)
T PF08887_consen 4 FEFFLEKFGPPID---RQEVPEESIE----KYKGKLPDELLEYWKEY-------------GFGGYGDGL--------FWL 55 (109)
T ss_pred HHHHHHHcCCCcC---CCcCCHHHHH----HhcCCCcHHHHHHHHHc-------------CCchhcCcE--------EEE
Confidence 4556665545433 3455666664 34456999999999999 445566665 666
Q ss_pred cChhHHHHHHHHHHHhcCCCCCCceEEEEeccCCCC
Q 021297 97 IPLSHIIMETKEIRRHLDFPGRDKYVVVAFSSTYSE 132 (314)
Q Consensus 97 L~L~~i~~~~~~~r~~~~~~~~~~~~~v~~~~~~~~ 132 (314)
..-++-..-.+.|..--.+...+.+++++-| ++++
T Consensus 56 vnP~dy~~vl~~~~~~~~~~~~~~~~~ia~t-AFGd 90 (109)
T PF08887_consen 56 VNPDDYEDVLDEWLGGTPLFDPDNYIPIART-AFGD 90 (109)
T ss_pred ECHHHHHHHHHHHhcCCccccCceEEEEEEc-cccc
Confidence 6666655555566532222233456666555 4444
No 18
>PRK12449 acyl carrier protein; Provisional
Probab=41.08 E-value=77 Score=23.65 Aligned_cols=46 Identities=15% Similarity=0.290 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHHhhChhhhhccCCCCCH-HH-----------HHHHHHHcCCCCCHHH
Q 021297 11 KRCWDRLKNWLAENFPEAKATLRKGASE-AD-----------IQQLEKSLKVKLPVPT 56 (314)
Q Consensus 11 ~~~W~rie~wl~~~~P~~~~~L~~gase-~~-----------i~~~E~~Lg~~LP~~~ 56 (314)
...++++.+-+++.++.....+.+-.+- ++ +.++|.++|+.+|++-
T Consensus 4 ~~i~~~l~~il~~~~~~~~~~i~~~~~l~~dlg~DSl~~~~li~~lE~~f~i~i~~~~ 61 (80)
T PRK12449 4 EEIFERLINLIQKQRSYLSLAITEQTHLKDDLAVDSIELVEFIINVEDEFHIAIPDED 61 (80)
T ss_pred HHHHHHHHHHHHHHhCCCccccCCCCcHHHHcCCcHHHHHHHHHHHHHHhCCCCCHHH
Confidence 3568899999999887666666666655 22 4569999999999763
No 19
>PF14263 DUF4354: Domain of unknown function (DUF4354); PDB: 3NRF_B 3SB3_A.
Probab=39.86 E-value=1.3e+02 Score=25.55 Aligned_cols=63 Identities=5% Similarity=0.009 Sum_probs=44.8
Q ss_pred EeeeCCeEEEEEeEEecCcCCCCCCCCceEEEEEEEEEeCCCccccCCCccccEEEeeeeEEEEeCCCceEeee
Q 021297 220 IAVTNGVKIRASAVFIPELADPESDTEKYLFAYSIRMSLLPEGCVINGMTFSSCQLQRRHWIIHANNVVVSVVS 293 (314)
Q Consensus 220 ~~~T~gI~V~v~~~y~~e~s~~~~~~~~y~f~Y~Iri~n~~~~~~~~~~~~~~~QL~sRhW~I~~~~g~~~~V~ 293 (314)
..++++|.|-+...=.+.-|.. ++..|-=+|.|.+.| .+. +++.|..=..+-.+.+|+.-..+
T Consensus 21 a~~~d~i~V~At~~~~Gs~sv~--~k~~ytktF~V~vaN-------~s~--~~idLsk~Cf~a~~~~gk~f~ld 83 (124)
T PF14263_consen 21 ASAPDNIAVYATEKSQGSVSVG--GKSFYTKTFDVTVAN-------LSD--KDIDLSKMCFKAYSPDGKEFKLD 83 (124)
T ss_dssp ----SSEEEEEEEEEEEEEEET--TEEEEEEEEEEEEEE--------SS--S-EE-TT-EEEEEETTS-EEEEE
T ss_pred hccCCCeEEEEEecCCccEeec--CccceEEEEEEEEec-------CCC--CccccccchhhhccccCCEEEec
Confidence 5667899999988887777765 377888899999999 677 89999999999999998754433
No 20
>CHL00124 acpP acyl carrier protein; Validated
Probab=39.24 E-value=74 Score=23.87 Aligned_cols=46 Identities=13% Similarity=0.320 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHhhChhhhhccCCCCCHHH------------HHHHHHHcCCCCCHHH
Q 021297 11 KRCWDRLKNWLAENFPEAKATLRKGASEAD------------IQQLEKSLKVKLPVPT 56 (314)
Q Consensus 11 ~~~W~rie~wl~~~~P~~~~~L~~gase~~------------i~~~E~~Lg~~LP~~~ 56 (314)
...++++.+.+++.+-.-.+.+.+-.+=.+ +.++|.++|+++|++-
T Consensus 4 ~~i~~~l~~ii~~~~~~~~~~i~~d~~l~~dlg~DSl~~~eli~~le~~f~i~i~~~~ 61 (82)
T CHL00124 4 NDIFEKVQSIVAEQLGIEKSEVTLDANFTRDLGADSLDVVELVMAIEEKFDIEIPDED 61 (82)
T ss_pred HHHHHHHHHHHHHHHCCCHHHCCCCcchhhhcCCcHHHHHHHHHHHHHHHCCccCHHH
Confidence 356788888888876433334555444433 5669999999999853
No 21
>COG0246 MtlD Mannitol-1-phosphate/altronate dehydrogenases [Carbohydrate transport and metabolism]
Probab=38.94 E-value=51 Score=33.94 Aligned_cols=48 Identities=29% Similarity=0.594 Sum_probs=39.8
Q ss_pred hHHHHHHHHHH-HHHHHHhh--Chh-hhhccCCCCCHHHHHHHHHHcCCCCC
Q 021297 6 LVKRVKRCWDR-LKNWLAEN--FPE-AKATLRKGASEADIQQLEKSLKVKLP 53 (314)
Q Consensus 6 ~~~~v~~~W~r-ie~wl~~~--~P~-~~~~L~~gase~~i~~~E~~Lg~~LP 53 (314)
.|.+.+..|+. +-.|+.+| ||. +.+..-|+.|++++++++..+|+.=|
T Consensus 185 ~Vl~~a~~~~~~~a~wi~~~v~FpnsmVDRIVP~~t~~~~~~i~~~~g~~D~ 236 (473)
T COG0246 185 AVLRFASEWDLALAAWIEENVGFPNSMVDRIVPATTDDERDEIEDALGVEDP 236 (473)
T ss_pred HHHHHHHhhhhHHHHHHHhcCCCCcccccccCCCCChHHHHHHHHHhcCCCc
Confidence 46677888855 88999998 776 55899999999999999999998533
No 22
>TIGR00517 acyl_carrier acyl carrier protein. S (Ser) at position 37 in the seed alignment, in the motif DSLD, is the phosphopantetheine attachment site.
Probab=38.49 E-value=66 Score=23.81 Aligned_cols=46 Identities=15% Similarity=0.303 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHhhChhhhhccCCCCCH-H-----------HHHHHHHHcCCCCCHHH
Q 021297 11 KRCWDRLKNWLAENFPEAKATLRKGASE-A-----------DIQQLEKSLKVKLPVPT 56 (314)
Q Consensus 11 ~~~W~rie~wl~~~~P~~~~~L~~gase-~-----------~i~~~E~~Lg~~LP~~~ 56 (314)
....++|.+.+++.+......+.+-.+- + =+.++|+++|+++|++-
T Consensus 2 ~~i~~~l~~il~~~~~~~~~~i~~~~~l~~dlglDSl~~veli~~lE~~f~i~i~~~~ 59 (77)
T TIGR00517 2 QEIFEKVKAIIKEQLNVDEDQVTPDASFVEDLGADSLDTVELVMALEEEFDIEIPDEE 59 (77)
T ss_pred hHHHHHHHHHHHHHHCCCHHHCCCCcchhhhcCCcHHHHHHHHHHHHHHHCCCCCHHH
Confidence 3457788888888754333344444442 2 24569999999999874
No 23
>PF11829 DUF3349: Protein of unknown function (DUF3349); InterPro: IPR021784 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 99 to 124 amino acids in length. ; PDB: 2KVC_A 3OL3_B 3OL4_A 2LKY_A.
Probab=35.98 E-value=69 Score=25.88 Aligned_cols=39 Identities=21% Similarity=0.515 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHHhhChh---------hhhccCCCCCHHHHHHHHHHc
Q 021297 10 VKRCWDRLKNWLAENFPE---------AKATLRKGASEADIQQLEKSL 48 (314)
Q Consensus 10 v~~~W~rie~wl~~~~P~---------~~~~L~~gase~~i~~~E~~L 48 (314)
|...-.+|-+||+.-+|+ +.+-|..-.|++|+.++=++|
T Consensus 1 ~~~~l~~iv~WLRaGYP~GvP~~Dy~PLlALL~r~Ltd~ev~~Va~~L 48 (96)
T PF11829_consen 1 MPSFLASIVDWLRAGYPEGVPPTDYVPLLALLRRRLTDDEVAEVAAEL 48 (96)
T ss_dssp HHHHHHHHHHHHHHH-TT-B-HHHHHHHHHHHTTTS-HHHHHHHHHHH
T ss_pred CChHHHHHHHHHHccCCCCCCCCccHHHHHHhcccCCHHHHHHHHHHH
Confidence 456788999999999997 345688889999999887765
No 24
>PF03213 Pox_P35: Poxvirus P35 protein; InterPro: IPR004900 The Poxvirus P35 protein is an immunodominant envelope protein. It binds to heparan sulphate on the cell surface to provide virion attachment to target cell [].; GO: 0019031 viral envelope
Probab=34.82 E-value=27 Score=34.03 Aligned_cols=25 Identities=40% Similarity=0.756 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHhhChhhhhccCCC
Q 021297 11 KRCWDRLKNWLAENFPEAKATLRKG 35 (314)
Q Consensus 11 ~~~W~rie~wl~~~~P~~~~~L~~g 35 (314)
...|.||.+||+.|+|.....|.-|
T Consensus 255 ~~~wsrl~~Wla~~~P~~~y~lttP 279 (325)
T PF03213_consen 255 NSIWSRLGKWLAKRFPGAYYFLTTP 279 (325)
T ss_pred hhHHHHHHHHHHhhCCCchhhhhch
Confidence 3689999999999999988766555
No 25
>PF05597 Phasin: Poly(hydroxyalcanoate) granule associated protein (phasin); InterPro: IPR008769 Polyhydroxyalkanoates (PHAs) are storage polyesters synthesised by various bacteria as intracellular carbon and energy reserve material. PHAs are accumulated as water-insoluble inclusions within the cells. This family consists of the phasins PhaF and PhaI which act as a transcriptional regulator of PHA biosynthesis genes. PhaF has been proposed to repress expression of the phaC1 gene and the phaIF operon.
Probab=30.84 E-value=1e+02 Score=26.26 Aligned_cols=41 Identities=24% Similarity=0.397 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHHHHHHhhChhhhhccCCCCCHHHHHHHHHHc
Q 021297 7 VKRVKRCWDRLKNWLAENFPEAKATLRKGASEADIQQLEKSL 48 (314)
Q Consensus 7 ~~~v~~~W~rie~wl~~~~P~~~~~L~~gase~~i~~~E~~L 48 (314)
-.++...|+++|+-+.+..-.....|.-| |..||+++++.+
T Consensus 78 ~~~~~~~~dklE~~fd~rV~~aL~rLgvP-s~~dv~~L~~rI 118 (132)
T PF05597_consen 78 KERATGQWDKLEQAFDERVARALNRLGVP-SRKDVEALSARI 118 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCC-CHHHHHHHHHHH
Confidence 35788899999999999988888888877 789999998876
No 26
>PF08828 DSX_dimer: Doublesex dimerisation domain; InterPro: IPR014932 Doublesex (DSX) is a transcription factor that regulates somatic sexual differences in Drosophila. The structure has revealed a novel dimeric arrangement of ubiquitin-associated folds that has not previously been identified in a transcription factor []. ; PDB: 1ZV1_B 2JZ0_A 2JZ1_B.
Probab=28.83 E-value=50 Score=24.53 Aligned_cols=18 Identities=28% Similarity=0.803 Sum_probs=11.1
Q ss_pred CCChhHH-----------HHHHHHHHHHH
Q 021297 2 YPWPLVK-----------RVKRCWDRLKN 19 (314)
Q Consensus 2 ~~~~~~~-----------~v~~~W~rie~ 19 (314)
|||.+.+ .+..||+||++
T Consensus 19 YpWEmmpLmyVILK~A~~D~eeA~rrI~E 47 (62)
T PF08828_consen 19 YPWEMMPLMYVILKYADADVEEASRRIDE 47 (62)
T ss_dssp --GGGHHHHHHHHHHTTT-HHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhcCCCHHHHHHHHHH
Confidence 8998876 45677777765
No 27
>PF08060 NOSIC: NOSIC (NUC001) domain; InterPro: IPR012976 This is the central domain in Nop56/SIK1-like proteins [].; PDB: 3PLA_K 3ICX_B 3ID6_A 3ID5_E 3NVM_A 3NMU_B 2NNW_C 3NVI_A 3NVK_A 2OZB_E ....
Probab=27.08 E-value=57 Score=23.13 Aligned_cols=28 Identities=25% Similarity=0.493 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHHHhhChhhhhccCC
Q 021297 7 VKRVKRCWDRLKNWLAENFPEAKATLRK 34 (314)
Q Consensus 7 ~~~v~~~W~rie~wl~~~~P~~~~~L~~ 34 (314)
-+.+...=.|++.|-..||||+..-+..
T Consensus 13 d~ei~~~~~~lre~Y~~~FPEL~~lv~~ 40 (53)
T PF08060_consen 13 DKEINLLHMRLREWYSWHFPELESLVPN 40 (53)
T ss_dssp HHHHHHHHHHHHHHHTTTSTTHHHHS-S
T ss_pred HHHHHHHHHHHHHHHHccchhHHHHcCC
Confidence 3566777889999999999999865543
No 28
>PRK05350 acyl carrier protein; Provisional
Probab=23.24 E-value=2.1e+02 Score=21.58 Aligned_cols=45 Identities=22% Similarity=0.257 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHhhChhhhhccCCCCC-HHH-----------HHHHHHHcCCCCCHH
Q 021297 11 KRCWDRLKNWLAENFPEAKATLRKGAS-EAD-----------IQQLEKSLKVKLPVP 55 (314)
Q Consensus 11 ~~~W~rie~wl~~~~P~~~~~L~~gas-e~~-----------i~~~E~~Lg~~LP~~ 55 (314)
..+.++|.+.+++.+..-...+.+.++ .++ +.++|.++|+++|++
T Consensus 5 ~~i~~~v~~ii~~~~~~~~~~i~~d~~l~~dlg~DSld~veli~~lE~~fgI~i~~~ 61 (82)
T PRK05350 5 EEILERLRAILVELFEIDPEDITPEANLYEDLDLDSIDAVDLVVHLQKLTGKKIKPE 61 (82)
T ss_pred HHHHHHHHHHHHHHhCCCHHHCCCCccchhhcCCCHHHHHHHHHHHHHHHCCccCHH
Confidence 345677888888775433345555554 222 456999999999975
No 29
>PRK15037 D-mannonate oxidoreductase; Provisional
Probab=23.14 E-value=1.3e+02 Score=31.18 Aligned_cols=39 Identities=28% Similarity=0.512 Sum_probs=32.6
Q ss_pred HHHHHHHHhh--Chh-hhhccCCCCCHHHHHHHHHHcCCCCC
Q 021297 15 DRLKNWLAEN--FPE-AKATLRKGASEADIQQLEKSLKVKLP 53 (314)
Q Consensus 15 ~rie~wl~~~--~P~-~~~~L~~gase~~i~~~E~~Lg~~LP 53 (314)
..+.+|+++| ||. +.+...|+.++++++++++.+|+.=+
T Consensus 208 ~~~~~wi~~~v~FpnsmVDRIvP~~~~~~~~~~~~~~G~~D~ 249 (486)
T PRK15037 208 PQLAAWIEENVTFPCTMVDRIVPAATPETLQEIADQLGVYDP 249 (486)
T ss_pred HHHHHHHHhcCccCccccccCCCCCCHHHHHHHHHHhCCCcc
Confidence 4678899998 565 55889999999999999999999644
No 30
>PRK07639 acyl carrier protein; Provisional
Probab=22.25 E-value=1.6e+02 Score=22.71 Aligned_cols=44 Identities=14% Similarity=0.116 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHhhChhhh-hccCCCCCH------------HHHHHHHHHcCCCCCHH
Q 021297 12 RCWDRLKNWLAENFPEAK-ATLRKGASE------------ADIQQLEKSLKVKLPVP 55 (314)
Q Consensus 12 ~~W~rie~wl~~~~P~~~-~~L~~gase------------~~i~~~E~~Lg~~LP~~ 55 (314)
.+-++|++-|++.++.-. +.+.+.+.= +=+.++|.++|+++|++
T Consensus 5 ei~~~i~~il~e~l~~~~~~~i~~d~~l~edL~lDSld~velv~~lE~~fgi~i~d~ 61 (86)
T PRK07639 5 ALKNAVLKIMEEKLELKNVTHLEETMRLNEDLYIDSVMMLQLIVYIEMDVKLCVPED 61 (86)
T ss_pred HHHHHHHHHHHHHhCCCccccCCCCCCcccccCCChHHHHHHHHHHHHHHCCccCHH
Confidence 356788888888876432 334433322 23566999999999987
No 31
>TIGR02336 1,3-beta-galactosyl-N-acetylhexosamine phosphorylase. Members of this family are found in phylogenetically diverse bacteria, including Clostridium perfringens (in the Firmicutes), Bifidobacterium longum and Propionibacterium acnes (in the Actinobacteria), and Vibrio vulnificus (in the Proteobacteria), most of which occur as mammalian pathogens or commensals. The nominal activity, 1,3-beta-galactosyl-N-acetylhexosamine phosphorylase (EC 2.4.1.211), varies somewhat from instance to instance in relative rates for closely related substrates.
Probab=21.59 E-value=1.6e+02 Score=31.78 Aligned_cols=46 Identities=20% Similarity=0.387 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHHHhhChhhhh--------------------------ccCCCCCHHHHHHHHHHcCCCCCHH
Q 021297 9 RVKRCWDRLKNWLAENFPEAKA--------------------------TLRKGASEADIQQLEKSLKVKLPVP 55 (314)
Q Consensus 9 ~v~~~W~rie~wl~~~~P~~~~--------------------------~L~~gase~~i~~~E~~Lg~~LP~~ 55 (314)
+=+.+-+++++||++| |+..- .-...+|...|++||++.|.+|-++
T Consensus 187 t~~~~~~~l~~wl~~~-p~~dVvRfTTfFy~Ftl~f~~~~kek~vDWfgY~~sVSp~ale~Fe~e~GY~l~pE 258 (719)
T TIGR02336 187 TRKHVFDTFEQWLKDS-PQTDVVRFTTFFYQFTLLFDEKRREKVVDWFGYACTVSPRALEDFEAKYGYKLRPE 258 (719)
T ss_pred HHHHHHHHHHHHHHhC-CCCcEEEEeeeeeeEeEEeccccccceeeccCcccccCHHHHHHHHHHhCCCCCHH
Confidence 3456678899999998 54320 1334568999999999999998543
No 32
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=21.17 E-value=4.9e+02 Score=26.66 Aligned_cols=82 Identities=17% Similarity=0.173 Sum_probs=46.8
Q ss_pred hhhhcCcEEEecCCCceeeeecCCCCCc----eeEeeeCCeEEEEEeEEecCcCC-CCCCCCceEEEEEEEEEeCCCccc
Q 021297 190 RRLHNGIIRLRDEENLKFINLFPEEPPL----CSIAVTNGVKIRASAVFIPELAD-PESDTEKYLFAYSIRMSLLPEGCV 264 (314)
Q Consensus 190 ~~Le~G~~~v~~~~~~r~i~lfp~~~p~----~~~~~T~gI~V~v~~~y~~e~s~-~~~~~~~y~f~Y~Iri~n~~~~~~ 264 (314)
..|-.|...|-.++.+=.-+.++.-+|+ ++-.+-.+|+|+-...---+... .-......-|+|+|+|+|.
T Consensus 379 ~~Ll~G~~~v~~dg~fvG~~~l~~~~~ge~~~l~~G~D~~v~v~r~~~~~~~~~~G~~~~~~~~~~~~~i~v~N~----- 453 (525)
T TIGR02231 379 FPLLPGEVNIFRGNGFVGRSHLENVAPGERFELSLGVDEGIRIERKVVKRQTDEGGLIGNTSRTEYAYRITLKNL----- 453 (525)
T ss_pred CcccCCceEEEECCEeEEeeecCCCCCCCeEEEeccCCCceEEEEeeeeeccccCceecccEEEEEEEEEEEEcC-----
Confidence 3456677666666655555555544443 55555677887754432222111 1112446789999999994
Q ss_pred cCCCccccEEEeee
Q 021297 265 INGMTFSSCQLQRR 278 (314)
Q Consensus 265 ~~~~~~~~~QL~sR 278 (314)
...-.++.+..|
T Consensus 454 --~~~~v~v~v~d~ 465 (525)
T TIGR02231 454 --RKEPERVQIEEQ 465 (525)
T ss_pred --CCCceEEEEEee
Confidence 342256666664
No 33
>PF10691 DUF2497: Protein of unknown function (DUF2497) ; InterPro: IPR019632 Members of this family belong to the Alphaproteobacteria. The function of the family is not known.
Probab=21.05 E-value=51 Score=25.26 Aligned_cols=15 Identities=47% Similarity=0.835 Sum_probs=12.7
Q ss_pred HHHHHHHhhChhhhh
Q 021297 16 RLKNWLAENFPEAKA 30 (314)
Q Consensus 16 rie~wl~~~~P~~~~ 30 (314)
-|+.||.+|.|.+..
T Consensus 46 mLkeWLD~nLP~lVE 60 (73)
T PF10691_consen 46 MLKEWLDENLPGLVE 60 (73)
T ss_pred HHHHHHHhccHHHHH
Confidence 378999999998874
No 34
>PRK05828 acyl carrier protein; Validated
Probab=20.75 E-value=1.3e+02 Score=23.32 Aligned_cols=45 Identities=13% Similarity=0.165 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHh-hChhhhhccCCCCCHHH-----------HHHHHHHcCCCCCHHH
Q 021297 12 RCWDRLKNWLAE-NFPEAKATLRKGASEAD-----------IQQLEKSLKVKLPVPT 56 (314)
Q Consensus 12 ~~W~rie~wl~~-~~P~~~~~L~~gase~~-----------i~~~E~~Lg~~LP~~~ 56 (314)
..-++|++.+++ ++..-.+...+.++=++ +.++|.++|+++|++-
T Consensus 5 eI~~~i~~ii~e~~~~~~~d~i~~~~~~~dLg~DSLd~velv~~lE~~f~I~i~~e~ 61 (84)
T PRK05828 5 EILLKIKEIAKKKNFAVTLDESNINKPYRELKIDSLDMFSIIVSLESEFNIEFSDEK 61 (84)
T ss_pred HHHHHHHHHHHHhccCCCcccccCCCCHHhcCCCHHHHHHHHHHHHHHHCCCcCHHH
Confidence 457889999987 44332233333332222 4569999999999753
No 35
>TIGR01837 PHA_granule_1 poly(hydroxyalkanoate) granule-associated protein. This model describes a domain found in some proteins associated with polyhydroxyalkanoate (PHA) granules in a subset of species that have PHA inclusion granules. Included are two tandem proteins of Pseudomonas oleovorans, PhaI and PhaF, and their homologs in related species. PhaF proteins have a low-complexity C-terminal region with repeats similar to AAAKP.
Probab=20.15 E-value=1.8e+02 Score=24.00 Aligned_cols=37 Identities=27% Similarity=0.497 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHhhChhhhhccCCCCCHHHHHHHHHHc
Q 021297 11 KRCWDRLKNWLAENFPEAKATLRKGASEADIQQLEKSL 48 (314)
Q Consensus 11 ~~~W~rie~wl~~~~P~~~~~L~~gase~~i~~~E~~L 48 (314)
...|++++.-+.+..-.+...|+- +|.+||+++++.+
T Consensus 69 ~~~~~~le~~~~~~v~~~L~~lg~-~tk~ev~~L~~RI 105 (118)
T TIGR01837 69 QRNWDKLEKAFDERVEQALNRLNI-PSREEIEALSAKI 105 (118)
T ss_pred HhhHHHHHHHHHHHHHHHHHHcCC-CCHHHHHHHHHHH
Confidence 467999999999988888877765 4889999988876
No 36
>PRK11032 hypothetical protein; Provisional
Probab=20.14 E-value=3e+02 Score=24.25 Aligned_cols=26 Identities=4% Similarity=0.123 Sum_probs=19.4
Q ss_pred CCCCCHHHHHHHHHHcCCCCCHHHHHHhhH
Q 021297 33 RKGASEADIQQLEKSLKVKLPVPTRILYRF 62 (314)
Q Consensus 33 ~~gase~~i~~~E~~Lg~~LP~~~r~~yr~ 62 (314)
..=+|++|++.+++-+. .|++.+.+.
T Consensus 40 ~~elT~dEl~lv~~ylk----RDL~ef~~~ 65 (160)
T PRK11032 40 AGELTRDEVDLITRAVR----RDLEEFARS 65 (160)
T ss_pred HHhcCHHHHHHHHHHHH----HHHHHHHHH
Confidence 34459999999888765 677887774
Done!