Query 021297
Match_columns 314
No_of_seqs 255 out of 776
Neff 6.1
Searched_HMMs 29240
Date Mon Mar 25 15:38:03 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021297.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/021297hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2f1e_A Protein APAG; APAG prot 100.0 6.2E-29 2.1E-33 207.7 11.2 79 219-308 2-84 (127)
2 1xvs_A Protein APAG; MCSG APC2 100.0 2.1E-28 7.1E-33 204.1 10.6 78 220-308 2-83 (126)
3 1tza_A APAG protein, SOR45; st 100.0 3.2E-28 1.1E-32 204.8 10.7 78 220-308 2-83 (134)
4 1xq4_A Protein APAG; all beta 99.9 6.1E-28 2.1E-32 204.1 10.3 78 220-308 7-88 (139)
5 2icg_A LIN2918 protein; hypoth 99.2 4E-10 1.4E-14 96.2 13.6 146 12-190 5-153 (160)
6 2prv_A Uncharacterized protein 99.1 1.3E-09 4.5E-14 92.5 13.0 135 15-190 5-139 (153)
7 3d5p_A Putative glucan synthes 98.9 6.6E-09 2.3E-13 87.5 10.3 117 31-188 10-126 (144)
8 2pag_A Hypothetical protein; n 98.7 1.2E-07 4.1E-12 79.4 10.8 105 32-188 18-131 (135)
9 3ffv_A Protein SYD; membrane, 90.0 1.9 6.7E-05 37.4 9.7 110 37-187 58-176 (181)
10 3ol3_A Putative uncharacterize 50.4 16 0.00054 29.0 3.9 46 3-48 2-56 (107)
11 3nrf_A APAG protein; structura 43.7 58 0.002 25.7 6.2 63 221-294 2-64 (106)
12 3cfu_A Uncharacterized lipopro 35.2 1.9E+02 0.0064 23.8 8.6 61 221-290 8-80 (159)
13 1fad_A Protein (FADD protein); 32.4 87 0.003 23.4 5.6 56 6-63 9-65 (99)
14 2kvc_A Putative uncharacterize 27.5 81 0.0028 24.7 4.6 39 10-48 4-51 (103)
15 4dxe_H ACP, acyl carrier prote 25.1 1.1E+02 0.0038 23.1 5.1 44 13-56 27-82 (101)
16 2kci_A Putative acyl carrier p 20.7 80 0.0027 23.4 3.3 42 14-55 4-57 (87)
No 1
>2f1e_A Protein APAG; APAG protein, xanthomonas axonopodis PV.citri, structural genomics, unknown function; NMR {Xanthomonas axonopodis PV}
Probab=99.96 E-value=6.2e-29 Score=207.65 Aligned_cols=79 Identities=29% Similarity=0.461 Sum_probs=72.7
Q ss_pred eEeeeCCeEEEEEeEEecCcCCCCCCCCceEEEEEEEEEeCCCccccCCCccccEEEeeeeEEEEeCCCceEeeecCccc
Q 021297 219 SIAVTNGVKIRASAVFIPELADPESDTEKYLFAYSIRMSLLPEGCVINGMTFSSCQLQRRHWIIHANNVVVSVVSGEAVI 298 (314)
Q Consensus 219 ~~~~T~gI~V~v~~~y~~e~s~~~~~~~~y~f~Y~Iri~n~~~~~~~~~~~~~~~QL~sRhW~I~~~~g~~~~V~G~GVV 298 (314)
.+++|+||+|+|+|.|+|++|+|. +.+|+|+|+|||+| .++ .+|||++|||+|+|++|++++|+|+|||
T Consensus 2 ~~~~t~~I~V~V~~~y~~e~S~p~--~~~y~faY~I~I~N-------~~~--~~vQL~sRhW~Itd~~g~~~eV~G~GVV 70 (127)
T 2f1e_A 2 QDDPRYRVEVEVSPRFLAHQSTPD--EGRYAFAYSIRIQN-------AGA--VPARLVARHWQITDGNGRTEQVDGEGVV 70 (127)
T ss_dssp ----CCCEEEEEEEEECSTTCBGG--GTBEEEEEEEEEEE-------CSS--SCEEEEEEEEEEEETTSCEEEEEESSBT
T ss_pred ccceECCEEEEEEEEEchhhCCCc--CCEEEEEEEEEEEe-------CCC--CCEEEEeceEEEEeCCCCEEEEECCCee
Confidence 578999999999999999999995 99999999999999 778 9999999999999999999999999999
Q ss_pred ccceEE----EEEE
Q 021297 299 GMVWLK----LIVF 308 (314)
Q Consensus 299 G~~P~l----~~~y 308 (314)
|+||+| +|.|
T Consensus 71 G~qP~L~PGe~f~Y 84 (127)
T 2f1e_A 71 GEQPWLRPGEAFHY 84 (127)
T ss_dssp TBCCEECTTCEEEE
T ss_pred cCCCcCCCCCceEE
Confidence 999999 8888
No 2
>1xvs_A Protein APAG; MCSG APC26324, midwest center for structural genomics, structure initiative, PSI, structural genomics, unknown FUN; 2.01A {Vibrio cholerae} SCOP: b.1.23.1
Probab=99.95 E-value=2.1e-28 Score=204.13 Aligned_cols=78 Identities=26% Similarity=0.425 Sum_probs=74.6
Q ss_pred EeeeCCeEEEEEeEEecCcCCCCCCCCceEEEEEEEEEeCCCccccCCCccccEEEeeeeEEEEeCCCceEeeecCcccc
Q 021297 220 IAVTNGVKIRASAVFIPELADPESDTEKYLFAYSIRMSLLPEGCVINGMTFSSCQLQRRHWIIHANNVVVSVVSGEAVIG 299 (314)
Q Consensus 220 ~~~T~gI~V~v~~~y~~e~s~~~~~~~~y~f~Y~Iri~n~~~~~~~~~~~~~~~QL~sRhW~I~~~~g~~~~V~G~GVVG 299 (314)
.++|+||+|+|+|.|+|++|+|. +.+|+|+|+|||+| .++ .+|||++|||+|+|++|++++|+|+||||
T Consensus 2 ~~~t~~I~V~V~~~y~~e~S~p~--~~~y~faY~I~I~N-------~~~--~~vQL~sRhW~Itd~~g~~~eV~G~GVVG 70 (126)
T 1xvs_A 2 DVSLPCIKIQVQTRYIEEQSNPE--YQRFVFAYLITIKN-------LSS--QTVQLMSRRWLITDADGKQTVVEGDGVVG 70 (126)
T ss_dssp BCSCCCEEEEEEEEECGGGCBGG--GTBEEEEEEEEEEE-------CSS--SCEEEEEEEEEEEETTCCEEEEEEESBTT
T ss_pred CcccCCEEEEEEEEEchhcCCCc--CCEEEEEEEEEEEE-------CCC--CCEEEEecEEEEEeCCCCEEEEECCceEc
Confidence 46899999999999999999995 99999999999999 777 99999999999999999999999999999
Q ss_pred cceEE----EEEE
Q 021297 300 MVWLK----LIVF 308 (314)
Q Consensus 300 ~~P~l----~~~y 308 (314)
+||+| +|.|
T Consensus 71 ~qP~L~PGe~f~Y 83 (126)
T 1xvs_A 71 EQPRIKANDEYTY 83 (126)
T ss_dssp BCCEECTTCEEEE
T ss_pred CCCcCCCCCceEE
Confidence 99999 8888
No 3
>1tza_A APAG protein, SOR45; structural genomics, PSI, protein structure initiative, NORT structural genomics consortium, NESG, unknown function; 2.40A {Shewanella oneidensis} SCOP: b.1.23.1
Probab=99.95 E-value=3.2e-28 Score=204.84 Aligned_cols=78 Identities=32% Similarity=0.558 Sum_probs=74.0
Q ss_pred EeeeCCeEEEEEeEEecCcCCCCCCCCceEEEEEEEEEeCCCccccCCCccccEEEeeeeEEEEeCCCceEeeecCcccc
Q 021297 220 IAVTNGVKIRASAVFIPELADPESDTEKYLFAYSIRMSLLPEGCVINGMTFSSCQLQRRHWIIHANNVVVSVVSGEAVIG 299 (314)
Q Consensus 220 ~~~T~gI~V~v~~~y~~e~s~~~~~~~~y~f~Y~Iri~n~~~~~~~~~~~~~~~QL~sRhW~I~~~~g~~~~V~G~GVVG 299 (314)
+++|+||+|+|+|.|+|++|+|. +.+|+|+|+|||+| .++ .+|||++|||+|+|++|++++|+|+||||
T Consensus 2 ~~~t~~I~V~V~~~y~~e~S~p~--~~~y~faY~ItI~N-------~~~--~~vQL~sRhW~Itd~~g~~~eV~G~GVVG 70 (134)
T 1tza_A 2 SALDNSIRVEVKTEYIEQQSSPE--DEKYLFSYTITIIN-------LGE--QAAKLETRHWIITDANGKTSEVQGAGVVG 70 (134)
T ss_dssp -CGGGTEEEEEEEEEEEECCBTT--BCCEEEEEEEEEEE-------CSS--SCEEEEEEEEEEEETTSCEEEEEEESBTT
T ss_pred CCccCCEEEEEEEEEchhhCCCC--CCEEEEEEEEEEEe-------CCC--CCEEEEecEEEEEeCCCCEEEEEcCceEc
Confidence 46799999999999999999995 99999999999999 777 99999999999999999999999999999
Q ss_pred cceEE----EEEE
Q 021297 300 MVWLK----LIVF 308 (314)
Q Consensus 300 ~~P~l----~~~y 308 (314)
+||+| +|.|
T Consensus 71 eqP~L~PGe~F~Y 83 (134)
T 1tza_A 71 ETPTIPPNTAYQY 83 (134)
T ss_dssp BCCEECTTEEEEE
T ss_pred CCCcCCCCCceEE
Confidence 99999 8888
No 4
>1xq4_A Protein APAG; all beta protein, structural genomics, protein structure initiative, PSI, northeast structural genomics consortium, NESG; 2.70A {Bordetella pertussis} SCOP: b.1.23.1
Probab=99.95 E-value=6.1e-28 Score=204.15 Aligned_cols=78 Identities=28% Similarity=0.552 Sum_probs=74.6
Q ss_pred EeeeCCeEEEEEeEEecCcCCCCCCCCceEEEEEEEEEeCCCccccCCCccccEEEeeeeEEEEeCCCceEeeecCcccc
Q 021297 220 IAVTNGVKIRASAVFIPELADPESDTEKYLFAYSIRMSLLPEGCVINGMTFSSCQLQRRHWIIHANNVVVSVVSGEAVIG 299 (314)
Q Consensus 220 ~~~T~gI~V~v~~~y~~e~s~~~~~~~~y~f~Y~Iri~n~~~~~~~~~~~~~~~QL~sRhW~I~~~~g~~~~V~G~GVVG 299 (314)
..+|+||+|+|+|.|+|++|+|. +.+|+|+|+|||+| .++ .+|||++|||+|+|++|++++|+|+||||
T Consensus 7 ~~tT~gI~V~V~~~y~~e~S~p~--~~~y~FaY~ItI~N-------~~~--~~vQL~sRhW~ItD~~G~~~eV~G~GVVG 75 (139)
T 1xq4_A 7 PVKPYDLTVSVTPRYVPEQSDPS--QQQYVFAYTVRITN-------TGS--HPAQVISRHWIITDGEERVQEVRGLGVVG 75 (139)
T ss_dssp CCCSSCEEEEEEEEECGGGCBGG--GTBEEEEEEEEEEE-------CSS--SCEEEEEEEEEEECTTSCEEEEEEESSSS
T ss_pred ccccCCEEEEEEEEEchhhCCCC--CCEEEEEEEEEEEe-------CCC--CCEEEEecEEEEEeCCCCEEEEECCCeec
Confidence 56889999999999999999995 99999999999999 778 99999999999999999999999999999
Q ss_pred cceEE----EEEE
Q 021297 300 MVWLK----LIVF 308 (314)
Q Consensus 300 ~~P~l----~~~y 308 (314)
+||+| +|.|
T Consensus 76 eqPvL~PGe~F~Y 88 (139)
T 1xq4_A 76 QQPLLAPGETFEY 88 (139)
T ss_dssp CCCEECTTCEEEE
T ss_pred CCCcCCCCCceEE
Confidence 99999 8888
No 5
>2icg_A LIN2918 protein; hypothetical protein, structural genomics, PSI- protein structure initiative, joint center for structural G JCSG; 1.65A {Listeria innocua} SCOP: d.369.1.1
Probab=99.17 E-value=4e-10 Score=96.19 Aligned_cols=146 Identities=13% Similarity=0.133 Sum_probs=92.6
Q ss_pred HHHHHHHHHHHhhChhhhhccCCCCCHHHHHHHHHHcCCCCCHHHHHHhhHhcCccCCCCCcccccccccccceeeccce
Q 021297 12 RCWDRLKNWLAENFPEAKATLRKGASEADIQQLEKSLKVKLPVPTRILYRFCDGQECQTDDFESIGAMGLIGGYSFYGHL 91 (314)
Q Consensus 12 ~~W~rie~wl~~~~P~~~~~L~~gase~~i~~~E~~Lg~~LP~~~r~~yr~hnGq~~~~~~~~~~~~~GL~gg~~~y~~~ 91 (314)
..-++|++.+.++--. ..+.+|+|+++|+++|++||++||++||++++.|||.... |..+|...
T Consensus 5 ~~~~~i~~~i~~~~~~--~~~~~~~s~~~I~~~E~~Lgi~lP~~Yk~fL~~~~gg~~~--------------g~~i~~i~ 68 (160)
T 2icg_A 5 SFLEEVDRLITLSGIT--FHASGTGTPELIKIYQDALGNEFPETYKLFLEKYGTLTFN--------------GVSFYGIS 68 (160)
T ss_dssp HHHHHHHHHHHHCCSC--CBCCCCCCHHHHHHHHHHHTCCCCHHHHHHHHHTSSEEET--------------TEEECBCC
T ss_pred HHHHHHHHHHHHcccc--cccCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHhCCcccC--------------ceeeeeec
Confidence 4557888888765432 3477899999999999999999999999999999886543 11122111
Q ss_pred ee-eeccChhHHHHHHHHHHHhcCCCCCCceEEEEeccCCCCceEEEEecCCeeeeeeeeccCCCccccccccceecc--
Q 021297 92 VN-VYLIPLSHIIMETKEIRRHLDFPGRDKYVVVAFSSTYSEKFFFLNCTNGQLYVGTKNLLSDGEMIPCVPNALIAL-- 168 (314)
Q Consensus 92 ~~-~~LL~L~~i~~~~~~~r~~~~~~~~~~~~~v~~~~~~~~k~~~l~c~~g~~~vg~~~~~~~Ge~~pcvp~~~i~~-- 168 (314)
.. ....+...++..+..+|+..+++ +++++++.+.. +.+++++.+..+ .+|+ | +...+..
T Consensus 69 ~~~~~~~~~~~i~~~~~~~~~~~~~p--~~~i~i~~~~~--G~~~~ld~~~~~---------~~~e---~-~V~~~d~~~ 131 (160)
T 2icg_A 69 KRGLSAASIPDVKFATEQARTFGDIN--KEMIMIKNSGY--GSIFSIDTSIIG---------SEGE---P-VIVETNLSF 131 (160)
T ss_dssp TTGGGCCSTTBHHHHHHHHHHHTSSC--TTEEEEEECST--TCEEEEEEEEEC---------TTSS---E-EEEEECTTH
T ss_pred cCCcccCCCccchhhhHHHHHhcCCC--CCEEEEEecCC--CCEEEEEecccC---------CCCC---C-eEEEEECcc
Confidence 10 11123356777888898876666 66777776643 568888876221 1122 1 1222220
Q ss_pred cCCCCCccccchHHHHHHHHhh
Q 021297 169 GHGCNSDQQQDGMLLWLEEHGR 190 (314)
Q Consensus 169 ~~~~~~~~~~dsfl~WLee~~~ 190 (314)
.|+......|+||.+||...+.
T Consensus 132 ~~~~~~~~ia~sF~efL~~l~~ 153 (160)
T 2icg_A 132 KDNTEKKVVANSFGEFLLEEIE 153 (160)
T ss_dssp HHHCCCEEEESSHHHHHHHHHH
T ss_pred cCCCCcEEEeCCHHHHHHHHHH
Confidence 0111114689999999976554
No 6
>2prv_A Uncharacterized protein YOBK; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 1.30A {Bacillus subtilis} SCOP: d.369.1.1
Probab=99.08 E-value=1.3e-09 Score=92.55 Aligned_cols=135 Identities=21% Similarity=0.307 Sum_probs=85.0
Q ss_pred HHHHHHHHhhChhhhhccCCCCCHHHHHHHHHHcCCCCCHHHHHHhhHhcCccCCCCCcccccccccccceeeccceeee
Q 021297 15 DRLKNWLAENFPEAKATLRKGASEADIQQLEKSLKVKLPVPTRILYRFCDGQECQTDDFESIGAMGLIGGYSFYGHLVNV 94 (314)
Q Consensus 15 ~rie~wl~~~~P~~~~~L~~gase~~i~~~E~~Lg~~LP~~~r~~yr~hnGq~~~~~~~~~~~~~GL~gg~~~y~~~~~~ 94 (314)
+.|++-+.+.- +. ....+|+|+++|+++|++||++||.+||++++.|||.... |..+|+.....
T Consensus 5 ~~i~~li~~~~-~~-~~~~~~~see~I~~~E~~Lgi~lP~dYk~fLk~~ngg~~~--------------~~~i~~i~~~~ 68 (153)
T 2prv_A 5 SKVENFINENK-QN-AIFTEGASHENIGRIEENLQCDLPNSYKWFLEKYGAGGLF--------------GVLVLGYNFDH 68 (153)
T ss_dssp HHHHHHHHHHG-GG-CEECCCCCHHHHHHHHHHHTSCCCHHHHHHHHHHCSEEET--------------TEEECCCCSSS
T ss_pred HHHHHHHHHhh-hh-cccCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHhCCceec--------------eEEEEeccCCC
Confidence 34555554442 21 4577899999999999999999999999999999886542 22222222111
Q ss_pred eccChhHHHHHHHHHHHhcCCCCCCceEEEEeccCCCCceEEEEecCCeeeeeeeeccCCCccccccccceecccCCCCC
Q 021297 95 YLIPLSHIIMETKEIRRHLDFPGRDKYVVVAFSSTYSEKFFFLNCTNGQLYVGTKNLLSDGEMIPCVPNALIALGHGCNS 174 (314)
Q Consensus 95 ~LL~L~~i~~~~~~~r~~~~~~~~~~~~~v~~~~~~~~k~~~l~c~~g~~~vg~~~~~~~Ge~~pcvp~~~i~~~~~~~~ 174 (314)
..++..+..+|+..+++ ++++++..+ ++.+++++.+..+ +++ | |..++... ....
T Consensus 69 -----~~i~~~~~~~~~~~~~p--~~~i~i~~~---g~~~~~ld~~~~~----------~~~---~-pv~~wd~~-~~~~ 123 (153)
T 2prv_A 69 -----ASVVNRTNEYKEHYGLT--DGLVVIEDV---DYFAYCLDTNKMK----------DGE---C-PVVEWDRV-IGYQ 123 (153)
T ss_dssp -----CHHHHHHHHHHHHSCCC--TTEEEEEEC---SSEEEEEETTSCB----------TTB---C-CEEEEETT-TEEE
T ss_pred -----ccHHHHHHHHHHhcCCC--CcEEEEecC---CCcEEEEeccccC----------CCC---C-CEEEEEcc-CCce
Confidence 46777788888876665 567777433 3567888876321 011 1 22222211 0011
Q ss_pred ccccchHHHHHHHHhh
Q 021297 175 DQQQDGMLLWLEEHGR 190 (314)
Q Consensus 175 ~~~~dsfl~WLee~~~ 190 (314)
...|+||.+||...+.
T Consensus 124 ~~iA~sF~efL~~~i~ 139 (153)
T 2prv_A 124 DTVADSFIEFFYNKIQ 139 (153)
T ss_dssp EEEESSHHHHHHHHHH
T ss_pred EEEcCCHHHHHHHHHH
Confidence 4689999999976654
No 7
>3d5p_A Putative glucan synthesis regulator of SMI1/KNR4; STR genomics, joint center for structural genomics, JCSG; HET: MSE; 1.45A {Bacteroides fragilis nctc 9343}
Probab=98.90 E-value=6.6e-09 Score=87.49 Aligned_cols=117 Identities=17% Similarity=0.287 Sum_probs=75.2
Q ss_pred ccCCCCCHHHHHHHHHHcCCCCCHHHHHHhhHhcCccCCCCCcccccccccccceeeccceeeeeccChhHHHHHHHHHH
Q 021297 31 TLRKGASEADIQQLEKSLKVKLPVPTRILYRFCDGQECQTDDFESIGAMGLIGGYSFYGHLVNVYLIPLSHIIMETKEIR 110 (314)
Q Consensus 31 ~L~~gase~~i~~~E~~Lg~~LP~~~r~~yr~hnGq~~~~~~~~~~~~~GL~gg~~~y~~~~~~~LL~L~~i~~~~~~~r 110 (314)
.+.+|||+++|+++|++||++||++||++|+.|||..... |+ . -..+++++++++..+.++
T Consensus 10 ~~~~~~s~~~I~~~E~~lgi~lP~~Yk~fl~~~NGg~~~~------------~~-~------~~~l~~~~~i~e~n~~~~ 70 (144)
T 3d5p_A 10 YKKDGASSASIDDVEKLLNTTLPKQYKSFLLWSNGGEGKL------------GD-N------YIYIWAIEDVIAYNHDYG 70 (144)
T ss_dssp EECCCCCHHHHHHHHHHHTSCCCHHHHHHHHHCSSEEEEE------------TT-E------EEEECCHHHHHHHHHHHT
T ss_pred ccCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHhCCCcccC------------CC-c------eeEeeCHHHHHHHHHHhh
Confidence 5789999999999999999999999999999999986541 11 0 035678888887766664
Q ss_pred HhcCCCCCCceEEEEeccCCCCceEEEEecCCeeeeeeeeccCCCccccccccceecccCCCCCccccchHHHHHHHH
Q 021297 111 RHLDFPGRDKYVVVAFSSTYSEKFFFLNCTNGQLYVGTKNLLSDGEMIPCVPNALIALGHGCNSDQQQDGMLLWLEEH 188 (314)
Q Consensus 111 ~~~~~~~~~~~~~v~~~~~~~~k~~~l~c~~g~~~vg~~~~~~~Ge~~pcvp~~~i~~~~~~~~~~~~dsfl~WLee~ 188 (314)
.....+ .++++++... +..+.++-+++++|+.- . |.+- . ......|+||.+||+..
T Consensus 71 ~~~~~p--~~~i~i~~D~---g~~~~~d~~~~~V~~~d----~-~~~~---~---------~~~~~iA~sF~eFL~~~ 126 (144)
T 3d5p_A 71 IQKYLQ--KEYWAFGMDG---DIGYILHLSDNSIYRVD----L-GDLD---I---------TSIKYIAPSFDDFLGKA 126 (144)
T ss_dssp HHHHSC--TTEEEEEEET---TEEEEEETTTCCEEEEE----T-TSCC---G---------GGCEEEESSHHHHHHHH
T ss_pred hhhhcC--CCEEEEEEcC---CeEEEECCCCCEEEEEE----C-CCCC---h---------hhheeHhhCHHHHHHHH
Confidence 332233 3366666552 22334444345544311 1 1000 0 01245889999999754
No 8
>2pag_A Hypothetical protein; nysgx, target 10412I, novel fold, structural genomics, PSI-2 structure initiative; 1.60A {Pseudomonas syringae PV} SCOP: d.369.1.1
Probab=98.68 E-value=1.2e-07 Score=79.39 Aligned_cols=105 Identities=10% Similarity=0.240 Sum_probs=65.7
Q ss_pred cCCCCCHHHHHHHHHHcCCCCCHHHHHHhhHh-cCccCCCCCcccccccccccceeeccceeeeeccCh------hHHHH
Q 021297 32 LRKGASEADIQQLEKSLKVKLPVPTRILYRFC-DGQECQTDDFESIGAMGLIGGYSFYGHLVNVYLIPL------SHIIM 104 (314)
Q Consensus 32 L~~gase~~i~~~E~~Lg~~LP~~~r~~yr~h-nGq~~~~~~~~~~~~~GL~gg~~~y~~~~~~~LL~L------~~i~~ 104 (314)
...++|+++|.++|++||++||+|||++++-+ || ++|+. .++++ ..+..
T Consensus 18 ~~~~~t~e~I~~~E~~Lgi~fP~dYk~fl~~~~~~---------------~~g~~---------~~~~~~~~~~~~~i~~ 73 (135)
T 2pag_A 18 PLELPDEDQLVEIEEQLFINIPFVFKEFLLTVSDV---------------VYGSL---------EPVTVTDPQSHTYLPE 73 (135)
T ss_dssp CCCCCCHHHHHHHHHHHTCCCCHHHHHHHHHHTTC---------------CBTTB---------CBCBSSCTTSTTBHHH
T ss_pred CCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHCCCc---------------ccCcc---------eeeeeccCCcccchHH
Confidence 45667999999999999999999999999975 22 22321 11122 12555
Q ss_pred HHHHHHHhcCCCCCCceEEEEeccCCCCceEEEEecCCeeeeeeeeccCCCccccccccceecccCCCC--CccccchHH
Q 021297 105 ETKEIRRHLDFPGRDKYVVVAFSSTYSEKFFFLNCTNGQLYVGTKNLLSDGEMIPCVPNALIALGHGCN--SDQQQDGML 182 (314)
Q Consensus 105 ~~~~~r~~~~~~~~~~~~~v~~~~~~~~k~~~l~c~~g~~~vg~~~~~~~Ge~~pcvp~~~i~~~~~~~--~~~~~dsfl 182 (314)
.+...++. +++ +++++++ .. ++++++++ .+|+++. ..|+.. ....++||.
T Consensus 74 ~~~~~~~~-~lp--~~~ipf~-~~--~Gn~iCid-~~g~Vv~---------------------wdhe~~~~~~~~~~s~~ 125 (135)
T 2pag_A 74 VCATAWDL-GVP--RELIPIC-QD--GEDYYCVE-EDGTVLL---------------------WSAEEELVTEESWESVW 125 (135)
T ss_dssp HHHHHHHH-TCC--TTSEEEE-EE--TTEEEEEC-TTSCEEE---------------------ECC---CEEEEEESSHH
T ss_pred HHHHHHHc-CCC--CCeEEEE-EC--CCCEEEEC-CCCEEEE---------------------EEccCCccCCccCccHH
Confidence 55444442 454 5577776 32 47777777 4455442 122212 346789999
Q ss_pred HHHHHH
Q 021297 183 LWLEEH 188 (314)
Q Consensus 183 ~WLee~ 188 (314)
.|++..
T Consensus 126 ~w~~~~ 131 (135)
T 2pag_A 126 HWARDV 131 (135)
T ss_dssp HHHHHT
T ss_pred HHHHHH
Confidence 999764
No 9
>3ffv_A Protein SYD; membrane, translocon, secyeg, nanodisc, cell inner membrane, cell membrane, protein binding; 2.00A {Escherichia coli}
Probab=90.02 E-value=1.9 Score=37.37 Aligned_cols=110 Identities=14% Similarity=0.270 Sum_probs=61.6
Q ss_pred CHHHHHHHHHHcCCCCCHHHHHHhhHhcCccCCCCCcccccccccccceeeccceeeeeccCh---------hHHHHHHH
Q 021297 37 SEADIQQLEKSLKVKLPVPTRILYRFCDGQECQTDDFESIGAMGLIGGYSFYGHLVNVYLIPL---------SHIIMETK 107 (314)
Q Consensus 37 se~~i~~~E~~Lg~~LP~~~r~~yr~hnGq~~~~~~~~~~~~~GL~gg~~~y~~~~~~~LL~L---------~~i~~~~~ 107 (314)
...++..+|+.|+++|.++++++|--. ... .-.+-++|. .+.||.. .+-+.+..
T Consensus 58 ~~~~f~~vE~aLei~lh~~i~~fy~~~----~ag------dm~a~~~~~-------~l~LlQvWs~~Df~rLQeNliGHl 120 (181)
T 3ffv_A 58 GEQNVNAVERAFDIVIQPTIHTFYTTQ----FAG------DMHAQFGDI-------KLTLLQTWSEDDFRRVQENLIGHL 120 (181)
T ss_dssp SCSSCHHHHHHSSCCCCHHHHHHTSSE----ECC------CEEEEETTE-------EEEECCCCSHHHHHHHHHHHHHHH
T ss_pred CcccHHHHHHHhcCcccHHHHHHHhhh----hcC------CCcceeCCc-------eeEEEecCCHHHHHHHHHHHHHHH
Confidence 345899999999999999999999433 210 124556653 2566653 33344444
Q ss_pred HHHHhcCCCCCCceEEEEeccCCCCceEEEEecCCeeeeeeeeccCCCccccccccceecccCCCCCccccchHHHHHHH
Q 021297 108 EIRRHLDFPGRDKYVVVAFSSTYSEKFFFLNCTNGQLYVGTKNLLSDGEMIPCVPNALIALGHGCNSDQQQDGMLLWLEE 187 (314)
Q Consensus 108 ~~r~~~~~~~~~~~~~v~~~~~~~~k~~~l~c~~g~~~vg~~~~~~~Ge~~pcvp~~~i~~~~~~~~~~~~dsfl~WLee 187 (314)
..++.++.+ + -+|...+++....|-.+|. .|+++ +-.++.+ .+...|+|+.+||++
T Consensus 121 ~mqrrLK~~--P-------------T~FIg~td~e~~lIsv~N~--sGeV~------LE~~G~~-~~~vLA~sLaeFL~~ 176 (181)
T 3ffv_A 121 VTQKRLKLP--P-------------TLFIATLEEELEVISVCNL--SGEVC------KETLGTR-KRTHLASNLAEFLNQ 176 (181)
T ss_dssp HHHHHTTCC--C-------------EEEEEECSSTTEEEEEETT--TCCEE------EEETTSS-CEEEEESSHHHHHHH
T ss_pred HHHHHhCCC--C-------------cEEEEEecCCCcEEEEECC--CCeEE------EEeCCCC-cceehhhCHHHHHHh
Confidence 455556554 1 1222223333334433333 34422 2223332 456789999999865
No 10
>3ol3_A Putative uncharacterized protein; tuberculosis, RV0543C, ortholog, iodide ION S phasing, structural genomics; HET: PG4 PGE; 1.95A {Mycobacterium smegmatis} PDB: 3ol4_A
Probab=50.41 E-value=16 Score=28.98 Aligned_cols=46 Identities=20% Similarity=0.490 Sum_probs=33.0
Q ss_pred CChhHHHHHHHHHHHHHHHHhhChh---------hhhccCCCCCHHHHHHHHHHc
Q 021297 3 PWPLVKRVKRCWDRLKNWLAENFPE---------AKATLRKGASEADIQQLEKSL 48 (314)
Q Consensus 3 ~~~~~~~v~~~W~rie~wl~~~~P~---------~~~~L~~gase~~i~~~E~~L 48 (314)
|-++.+.+-....+|-+||+.-+|+ +.+-|..-.|++||.++=+.|
T Consensus 2 ~~~~~~~~p~~l~siv~WLRaGYPeGVP~~Dy~PLlALL~R~Ltddev~~Va~~L 56 (107)
T 3ol3_A 2 PGSMTETTTTFMDNVLGWLHKGYPEGVPPKDYFALLALLKRSLTEDEVVRAAQAI 56 (107)
T ss_dssp -------CHHHHHHHHHHHHHHCTTCBCGGGHHHHHHHHTCCCCHHHHHHHHHHH
T ss_pred CcchhccCcHHHHHHHHHHHccCCCCCCCCccHHHHHHhcccCCHHHHHHHHHHH
Confidence 5567777888899999999999997 446688889999999877665
No 11
>3nrf_A APAG protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, unknown function; 1.50A {Pseudomonas aeruginosa} PDB: 3sb3_A
Probab=43.67 E-value=58 Score=25.66 Aligned_cols=63 Identities=13% Similarity=0.030 Sum_probs=48.8
Q ss_pred eeeCCeEEEEEeEEecCcCCCCCCCCceEEEEEEEEEeCCCccccCCCccccEEEeeeeEEEEeCCCceEeeec
Q 021297 221 AVTNGVKIRASAVFIPELADPESDTEKYLFAYSIRMSLLPEGCVINGMTFSSCQLQRRHWIIHANNVVVSVVSG 294 (314)
Q Consensus 221 ~~T~gI~V~v~~~y~~e~s~~~~~~~~y~f~Y~Iri~n~~~~~~~~~~~~~~~QL~sRhW~I~~~~g~~~~V~G 294 (314)
+++++|.|-+...=.+.-|.. ++..|-=+|.|.+.| .+. +.+.|..=..+-.+.+|..-..++
T Consensus 2 ~~~d~v~V~At~k~~GS~s~~--~k~~ytktFdV~vaN-------l~~--~~idLsk~C~~a~~~~gkef~ldT 64 (106)
T 3nrf_A 2 AAPDAVMVFARQGDKGSVSVG--DKHFRTQAFKVRLVN-------AAK--SEISLKNSCLVAQSAAGQSFRLDT 64 (106)
T ss_dssp ---CCCEEEEEEEEEEEEEET--TEEEEEEEEEEEEEC-------CSS--SCEECTTCEEEEEETTSCEEEEEE
T ss_pred CCcCcEEEEeeccccccEEeC--CeeEEEEEEEEEEec-------CCC--CccccchhhheeeCcCCCEEEecc
Confidence 567899998888888777776 367777889999999 677 899999999999999887644443
No 12
>3cfu_A Uncharacterized lipoprotein YJHA; YJHA_bacsu, SR562, NESG, structural genomics, PSI-2, protein structure initiative; 2.40A {Bacillus subtilis}
Probab=35.23 E-value=1.9e+02 Score=23.83 Aligned_cols=61 Identities=8% Similarity=0.009 Sum_probs=39.6
Q ss_pred eeeCCeEEEEEeEEecCcC-----------CCCC-CCCceEEEEEEEEEeCCCccccCCCccccEEEeeeeEEEEeCCCc
Q 021297 221 AVTNGVKIRASAVFIPELA-----------DPES-DTEKYLFAYSIRMSLLPEGCVINGMTFSSCQLQRRHWIIHANNVV 288 (314)
Q Consensus 221 ~~T~gI~V~v~~~y~~e~s-----------~~~~-~~~~y~f~Y~Iri~n~~~~~~~~~~~~~~~QL~sRhW~I~~~~g~ 288 (314)
...++++|+|..+--.... .|.+ ....-+..-.|+|+| .|+ ++.....=.+.+.|++|.
T Consensus 8 v~~~~~evTVnsv~~~~~~e~~~~~~~~~~~p~~~~~G~~fviV~VTIeN-------~g~--e~~~~s~~~F~L~d~dG~ 78 (159)
T 3cfu_A 8 FKAGHTNFTVNKVDRVQKGEYMNVGGAVNEETKTIKDDEERLIIEVTMEN-------IGE--DSISYNFIGFDLRDKNDQ 78 (159)
T ss_dssp EEETTEEEEEEEEEEECSSCBEESSCC------CBCCCSEEEEEEEEEEE-------CSS--SCEEEEGGGEEEECTTCC
T ss_pred EEECCEEEEEEEEEEcCCCceeecccccccCccccCCCCEEEEEEEEEEE-------CCC--CceeeCcccEEEEeCCCC
Confidence 4457788888666533221 1200 134345788999999 677 777777678899999986
Q ss_pred eE
Q 021297 289 VS 290 (314)
Q Consensus 289 ~~ 290 (314)
.-
T Consensus 79 ~~ 80 (159)
T 3cfu_A 79 SV 80 (159)
T ss_dssp BC
T ss_pred EE
Confidence 54
No 13
>1fad_A Protein (FADD protein); apoptosis, death domain; NMR {Mus musculus} SCOP: a.77.1.2
Probab=32.45 E-value=87 Score=23.38 Aligned_cols=56 Identities=14% Similarity=0.132 Sum_probs=40.0
Q ss_pred hHHHHHHHHHHHHHHHHhhChhhhhccCCCCCHHHHHHHHHHcCCCCCH-HHHHHhhHh
Q 021297 6 LVKRVKRCWDRLKNWLAENFPEAKATLRKGASEADIQQLEKSLKVKLPV-PTRILYRFC 63 (314)
Q Consensus 6 ~~~~v~~~W~rie~wl~~~~P~~~~~L~~gase~~i~~~E~~Lg~~LP~-~~r~~yr~h 63 (314)
.-..+...++.|.+-+......+...| |.|+.+|+.+|.+..-.+-+ .+..|..+.
T Consensus 9 ~~~~l~~~~~~ia~~lg~~Wk~Lar~L--g~~~~~I~~I~~~~~~d~~eq~~~mL~~W~ 65 (99)
T 1fad_A 9 GEAYLQVAFDIVCDNVGRDWKRLAREL--KVSEAKMDGIEEKYPRSLSERVRESLKVWK 65 (99)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHT--TCCHHHHHHHHHHCSSCHHHHHHHHHHHHH
T ss_pred CcccHHHHHHHHHHHHhhhHHHHHHHc--CCCHHHHHHHHHHCCCCHHHHHHHHHHHHH
Confidence 346777888888888877777887666 89999999999987544433 333444444
No 14
>2kvc_A Putative uncharacterized protein; structural genomics, seattle structural genomi for infectious disease, ssgcid, unknown function; NMR {Mycobacterium tuberculosis}
Probab=27.55 E-value=81 Score=24.70 Aligned_cols=39 Identities=23% Similarity=0.497 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHHhhChh---------hhhccCCCCCHHHHHHHHHHc
Q 021297 10 VKRCWDRLKNWLAENFPE---------AKATLRKGASEADIQQLEKSL 48 (314)
Q Consensus 10 v~~~W~rie~wl~~~~P~---------~~~~L~~gase~~i~~~E~~L 48 (314)
|...-.+|-+||+.-+|+ +.+-|..-.|++||+++=+.|
T Consensus 4 ~~~~l~siv~WLRaGYP~GVP~~Dy~PLlALL~r~Ltdeev~~Va~~L 51 (103)
T 2kvc_A 4 MNRFLTSIVAWLRAGYPEGIPPTDSFAVLALLCRRLSHDEVKAVANEL 51 (103)
T ss_dssp HHHHHHHHHHHHHHHCTTCCCHHHHHHHHHHHTTTSCHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHccCCCCCCCcchHHHHHHHhccCCHHHHHHHHHHH
Confidence 345678999999999997 345677888999998887665
No 15
>4dxe_H ACP, acyl carrier protein; acyl-carrier-protein synthase, type II acid synthesis pathway; 2.51A {Staphylococcus aureus}
Probab=25.08 E-value=1.1e+02 Score=23.06 Aligned_cols=44 Identities=16% Similarity=0.296 Sum_probs=29.6
Q ss_pred HHHHHHHHHHhhChhhhhccCCCCCH------------HHHHHHHHHcCCCCCHHH
Q 021297 13 CWDRLKNWLAENFPEAKATLRKGASE------------ADIQQLEKSLKVKLPVPT 56 (314)
Q Consensus 13 ~W~rie~wl~~~~P~~~~~L~~gase------------~~i~~~E~~Lg~~LP~~~ 56 (314)
.-++|.+.+++.+..-.+.+.+.++= +=+.++|.++|+++|++-
T Consensus 27 i~~~l~~iiae~l~~~~~~I~~d~~l~~dLGlDSL~~veLi~~lE~~fgi~i~~~~ 82 (101)
T 4dxe_H 27 NFDKVKDIIVDRLGVDADKVTEDASFKDDLGADSLDIAELVMELEDEFGTEIPDEE 82 (101)
T ss_dssp HHHHHHHHHHHTTCCCGGGCCTTCBTTTTSCCCHHHHHHHHHHHHHHTTCCCCHHH
T ss_pred HHHHHHHHHHHHHCcChhhCCCCCcchhhcCCCcHHHHHHHHHHHHHHCCCCCHHH
Confidence 46777777877764333344444433 455679999999999864
No 16
>2kci_A Putative acyl carrier protein; alpha, ACP, PCP, structural genomics, unknown function, PSI- 2, protein structure initiative; NMR {Geobacter metallireducens gs-15} PDB: 2kjs_A* 2lml_A* 2kwm_A*
Probab=20.72 E-value=80 Score=23.40 Aligned_cols=42 Identities=24% Similarity=0.290 Sum_probs=27.3
Q ss_pred HHHHHHHHHhhChhhhhccCCCCC------------HHHHHHHHHHcCCCCCHH
Q 021297 14 WDRLKNWLAENFPEAKATLRKGAS------------EADIQQLEKSLKVKLPVP 55 (314)
Q Consensus 14 W~rie~wl~~~~P~~~~~L~~gas------------e~~i~~~E~~Lg~~LP~~ 55 (314)
.+++.+-+++.+..-...+.+.++ -+=+.++|.++|+++|++
T Consensus 4 ~ekv~~il~e~l~~d~~~i~~d~~l~~dlg~DSL~~veli~~lE~eF~I~i~~e 57 (87)
T 2kci_A 4 LDALTPIFRQVFDDDSIVLTRETSANDIDAWDSLSHMNLIVSLEVHYKIKFALG 57 (87)
T ss_dssp HHHHHHHHHHHTTCSCCCCCTTCCSTTCCCCCSTHHHHHHHHHHHHHTCCCCHH
T ss_pred HHHHHHHHHHHhCCCHHHCCCCCCcccccCCChHHHHHHHHHHHHHHCCccCHH
Confidence 466777777776533333333332 234678999999999976
Done!