Query 021298
Match_columns 314
No_of_seqs 285 out of 1404
Neff 6.7
Searched_HMMs 46136
Date Fri Mar 29 09:08:57 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021298.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/021298hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF13883 Pyrid_oxidase_2: Pyri 100.0 2.3E-30 4.9E-35 226.4 14.1 146 85-234 3-169 (170)
2 COG0748 HugZ Putative heme iro 99.8 1.1E-20 2.4E-25 171.5 -2.6 205 91-304 8-223 (245)
3 PF10615 DUF2470: Protein of u 99.7 1.4E-17 2.9E-22 129.2 5.1 66 238-303 2-70 (83)
4 PRK03467 hypothetical protein; 99.7 1E-15 2.2E-20 129.8 16.8 127 89-221 7-138 (144)
5 KOG3374 Cellular repressor of 99.6 2.4E-15 5.2E-20 129.1 11.1 149 83-235 39-207 (210)
6 TIGR03668 Rv0121_F420 PPOX cla 99.6 2.6E-14 5.6E-19 121.5 15.4 121 90-213 3-138 (141)
7 TIGR03667 Rv3369 PPOX class pr 99.5 1.7E-13 3.8E-18 114.6 14.6 117 90-211 5-129 (130)
8 TIGR03666 Rv2061_F420 PPOX cla 99.5 4.1E-13 8.9E-18 112.9 15.4 112 94-210 7-127 (132)
9 PF01243 Pyridox_oxidase: Pyri 99.5 3.9E-13 8.5E-18 103.5 13.1 86 90-179 3-89 (89)
10 TIGR03618 Rv1155_F420 PPOX cla 99.4 6.1E-12 1.3E-16 102.2 14.2 107 103-213 1-116 (117)
11 PF12900 Pyridox_ox_2: Pyridox 99.3 1E-10 2.2E-15 99.0 15.1 119 89-213 2-140 (143)
12 COG3467 Predicted flavin-nucle 99.2 1.2E-09 2.5E-14 95.4 15.2 122 87-212 11-156 (166)
13 COG3787 Uncharacterized protei 99.1 1.7E-09 3.7E-14 89.1 12.6 126 90-221 3-133 (145)
14 PRK05679 pyridoxamine 5'-phosp 99.1 4.5E-09 9.7E-14 94.0 15.9 116 96-217 24-170 (195)
15 COG3871 Uncharacterized stress 98.8 5.5E-08 1.2E-12 82.1 11.0 117 90-216 8-130 (145)
16 COG0748 HugZ Putative heme iro 98.8 1E-09 2.2E-14 100.2 -0.6 135 84-223 81-222 (245)
17 TIGR00558 pdxH pyridoxamine-ph 98.7 6.3E-07 1.4E-11 81.5 16.3 79 96-179 46-124 (217)
18 COG0259 PdxH Pyridoxamine-phos 98.6 7.2E-07 1.6E-11 79.3 13.6 133 71-217 26-189 (214)
19 PRK06733 hypothetical protein; 98.4 7.7E-06 1.7E-10 70.2 14.4 108 90-220 11-120 (151)
20 PLN03049 pyridoxine (pyridoxam 98.4 8.7E-06 1.9E-10 81.8 16.4 116 96-217 286-433 (462)
21 COG5015 Uncharacterized conser 98.4 1.2E-05 2.5E-10 66.0 13.0 114 91-214 3-120 (132)
22 PLN02918 pyridoxine (pyridoxam 98.1 9.9E-05 2.1E-09 75.3 15.4 115 97-217 369-515 (544)
23 TIGR00026 hi_GC_TIGR00026 deaz 98.0 0.00012 2.6E-09 60.0 11.1 88 99-197 7-100 (113)
24 KOG2586 Pyridoxamine-phosphate 97.7 0.0002 4.3E-09 63.7 9.1 79 96-180 53-133 (228)
25 PF04075 DUF385: Domain of unk 97.6 0.00057 1.2E-08 57.5 10.5 99 100-209 26-132 (132)
26 PF04299 FMN_bind_2: Putative 97.4 0.008 1.7E-07 52.7 14.4 122 88-212 11-169 (169)
27 PF12766 Pyridox_oxase_2: Pyri 96.5 0.041 8.9E-07 44.1 10.3 74 97-175 18-99 (100)
28 COG2808 PaiB Transcriptional r 95.3 0.35 7.6E-06 43.4 11.7 100 88-190 11-133 (209)
29 COG3576 Predicted flavin-nucle 91.9 1.1 2.3E-05 39.6 8.6 117 91-216 33-153 (173)
30 PF04289 DUF447: Protein of un 83.9 2.8 6.2E-05 36.8 5.9 53 102-158 3-55 (177)
31 PF10012 DUF2255: Uncharacteri 59.7 99 0.0021 25.5 10.1 87 96-194 6-97 (116)
32 PF08922 DUF1905: Domain of un 49.6 81 0.0018 23.9 6.5 58 91-154 21-80 (80)
33 COG2075 RPL24A Ribosomal prote 35.0 46 0.00099 24.7 2.9 32 117-149 16-47 (66)
34 PF01613 Flavin_Reduct: Flavin 29.8 96 0.0021 25.8 4.6 53 101-156 8-63 (154)
35 PRK14891 50S ribosomal protein 27.8 46 0.00099 27.9 2.1 32 117-149 17-48 (131)
36 PF10756 bPH_6: Bacterial PH d 24.8 79 0.0017 23.2 2.8 34 278-311 4-37 (73)
37 PF13152 DUF3967: Protein of u 23.8 53 0.0011 21.2 1.4 17 69-85 6-22 (34)
38 cd00472 Ribosomal_L24e_L24 Rib 20.9 94 0.002 22.1 2.3 32 117-149 16-47 (54)
No 1
>PF13883 Pyrid_oxidase_2: Pyridoxamine 5'-phosphate oxidase; PDB: 1XHN_C.
Probab=99.97 E-value=2.3e-30 Score=226.41 Aligned_cols=146 Identities=45% Similarity=0.704 Sum_probs=111.8
Q ss_pred CCCCHHHHHHHHhcCCeEEEEeecC--CCCCceeEEEeeEE----EcCCCCEEEEecCcchHhHhhhcCCceEEEEeeC-
Q 021298 85 RLPPLEEIRTVLDRSVRGMLSTFSQ--KYEGYPSGSMVDFA----CDADGTPILAVSSLAVHTKDLLANPKCSLLVARD- 157 (314)
Q Consensus 85 ~~s~ae~ar~LL~~~~~g~LATv~~--~~dG~P~~S~v~ya----~d~dG~~~l~vS~~s~htrNL~~dPrvSL~V~~d- 157 (314)
....++.||+|++..++|+|+|++. +.+|+|+++++.|+ .+.+|+++|+++.++.|++||++||||||+|.+.
T Consensus 3 ~~~aA~~AR~Ll~~~~~g~LsTls~~~~~~G~Pfgs~v~~ad~~~~~~~G~p~~lls~la~ht~nl~~~~r~SL~i~~~~ 82 (170)
T PF13883_consen 3 REEAAELARTLLHQSRWGTLSTLSTQKDIDGYPFGSVVSYADGPCCDSTGRPIFLLSPLAQHTRNLKADPRVSLTISEPQ 82 (170)
T ss_dssp TT-HHHHHHHHHHH-SEEEEEEE--SGGGTTSEEEEEEE-BSSSTT---S--EEEE-TTSHHHHHHHH--EEEEEEEGGG
T ss_pred hHHHHHHHHHHHhhCCEEEEEeccCCCCCCCceEEEEEEEecccCcCCCCCEEEEEeCccHHHHHHhhCCCEEEEEecCC
Confidence 3456789999999999999999987 46899999999999 7889999999999999999999999999999863
Q ss_pred ----------CCCCcceEEEEEEEEEEeChhHHHHHHHHHHHhCCCC-ccccC---CCeEEEEEEEeEEEEEcccccccc
Q 021298 158 ----------PEDRTDLVITLHGDATSVAEKDKAAIRAVYLAKHPNA-FWVDF---GDFQFMRIEPKAVRYVSGVATALL 223 (314)
Q Consensus 158 ----------p~d~~~~rVtl~G~a~~v~~ee~~~l~~~y~~rhP~~-~~~~~---~df~l~rL~p~~v~~v~GFG~a~~ 223 (314)
|.++.++||||.|++++|++++.+.++++|+++||++ .|.+. +||.||||++++|+||||||+++
T Consensus 83 ~~~~~~~~~dp~~~~~~RvtL~G~~~~v~~~e~~~a~~~yl~~HP~a~~w~~~~~~hdf~~~rl~i~~v~~vgGFG~~~- 161 (170)
T PF13883_consen 83 GGDCDNSGVDPEDPACPRVTLTGRAEPVPPDEAAAARAAYLSRHPDAKHWLPFNSPHDFFFYRLEIERVYLVGGFGGAA- 161 (170)
T ss_dssp SSHHHHHT--TTSTTS-EEEEEEEEEE--TTTHHHHHHHHHHH-GGGGGS-GG---G--EEEEEEEEEEEEE-SSSS-E-
T ss_pred CCcccccCCCCCCCCCcEEEEEEEEEEcCchHHHHHHHHHHHHCcCccccccccccCccEEEEEEEEEEEEECccCCce-
Confidence 2234678999999999999888888999999999999 89988 99999999999999999999974
Q ss_pred CCCCCCHHHHh
Q 021298 224 GSGEFSKEEYQ 234 (314)
Q Consensus 224 ~~~~v~~eey~ 234 (314)
||++|||.
T Consensus 162 ---~i~~~~Y~ 169 (170)
T PF13883_consen 162 ---WISAEEYY 169 (170)
T ss_dssp ---EE-HHHHH
T ss_pred ---EeCHHHhc
Confidence 88999996
No 2
>COG0748 HugZ Putative heme iron utilization protein [Inorganic ion transport and metabolism]
Probab=99.77 E-value=1.1e-20 Score=171.46 Aligned_cols=205 Identities=23% Similarity=0.255 Sum_probs=166.8
Q ss_pred HHHHHHhcCCeEEEEeecCCCCCceeEEEeeEEEcCCCCEEEEecCcchHhHhhhcCCceEEEEeeCC-CC-CcceEEEE
Q 021298 91 EIRTVLDRSVRGMLSTFSQKYEGYPSGSMVDFACDADGTPILAVSSLAVHTKDLLANPKCSLLVARDP-ED-RTDLVITL 168 (314)
Q Consensus 91 ~ar~LL~~~~~g~LATv~~~~dG~P~~S~v~ya~d~dG~~~l~vS~~s~htrNL~~dPrvSL~V~~dp-~d-~~~~rVtl 168 (314)
-++.+++....|.|+|..+. .|.|++|.+++..|-+|++.++++.++.|++ +..|||||++..... .+ ...+|+++
T Consensus 8 na~~~l~~~~~~~l~~~~~~-~g~p~~sv~~~gid~~g~p~~~~~~~~~h~~-~~~d~r~sil~~~~g~~d~~~~~Rl~~ 85 (245)
T COG0748 8 NARHLLRSARLAALAGLEPV-TGVPFVSVVPVGIDIDGNPLILLSRLFPHTA-DEADPRCSILLGEPGKGDELALPRLTL 85 (245)
T ss_pred HHHHHHHHHHHHHHhcCCCC-CCCceeeeccceeccCCCcceeEeeeccccc-cccChhhhheecCcCcCChhhccchhH
Confidence 37999999999999999986 9999999999999999999999999999999 999999999887532 22 45679999
Q ss_pred EEEEEEeChhH--HHHHHHHHHHhCCCC-ccccCCCeEEEEEEEeEEEEEccccccccCCCCCCHHHHhhcCCCc-cccc
Q 021298 169 HGDATSVAEKD--KAAIRAVYLAKHPNA-FWVDFGDFQFMRIEPKAVRYVSGVATALLGSGEFSKEEYQAANVDP-IAQF 244 (314)
Q Consensus 169 ~G~a~~v~~ee--~~~l~~~y~~rhP~~-~~~~~~df~l~rL~p~~v~~v~GFG~a~~~~~~v~~eey~~A~pDp-l~~~ 244 (314)
.+.+..++.++ ...+.+.|..++|.+ .|.+.+||.+|+.++.+.....|++. .+ ..+-.+|.. .+ ....
T Consensus 86 e~~afr~~~~sv~lat~~~~g~~~~syAp~~~~~~d~~iyis~~arh~~N~~~~p-~v--s~m~iedea----~a~s~~~ 158 (245)
T COG0748 86 EIEAFRLEFDSVALATLRERGLPRASYAPLYVDDGDYYIYISEIARHARNLGFNP-KV--SVMFIEDEA----KAKSAFA 158 (245)
T ss_pred HHHHHHhccchHHHhhhhhcCCcCCCcCceEecCCceEEEEehHHHHhhccCcCC-ch--hhheecCch----hhhhHHH
Confidence 99998887653 355667788888888 77888999999999998887888875 10 112222222 22 2345
Q ss_pred chhhhhhhhccCHHHHHHHHHHhCCCC-CCcEEEEeecCCCcEEEE----cceeEEecCCCeeeE
Q 021298 245 SKPVASHMNRDHAEDTRIIVQHSTSIP-VASAYMLDLDSLGFNVKV----LLTVLSGACPQVIDL 304 (314)
Q Consensus 245 ~~~il~HMN~dH~d~l~~~~~~~~~~~-~~~a~m~~iD~~G~~lr~----~~~~~r~~F~~p~~v 304 (314)
+.+++.|||+||.+.+..|++.+.... ....+|.+||+.|+++.+ +....++.|+++..+
T Consensus 159 r~rl~~hmnAd~~eai~~yaqv~~~~~e~~~~~I~~Id~~gdfll~~l~~~~gl~v~gFgqa~~~ 223 (245)
T COG0748 159 RKRLREHMNADHAEAIAEYAQVLAQLAEATGGRIKGIDAMGDFLLFQLTPGQGLFVKGFGQAYAI 223 (245)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHhhhhcchhhcccccccceeeeccCCCceEEeccchhhcc
Confidence 789999999999999999999998875 445559999999999999 467889999988764
No 3
>PF10615 DUF2470: Protein of unknown function (DUF2470); InterPro: IPR019595 This entry represents a putative haem-iron utilisation family of proteins, as many members are annotated as being pyridoxamine 5'-phosphate oxidase-related, FMN-binding; however the function of this domain is not known. ; PDB: 3GAS_D 3SWJ_A 2ARZ_B.
Probab=99.70 E-value=1.4e-17 Score=129.16 Aligned_cols=66 Identities=33% Similarity=0.496 Sum_probs=52.9
Q ss_pred CCcccc-cchhhhhhhhccCHHHHHHHHHHhCCCC-CCcEEEEeecCCCcEEEE-cceeEEecCCCeee
Q 021298 238 VDPIAQ-FSKPVASHMNRDHAEDTRIIVQHSTSIP-VASAYMLDLDSLGFNVKV-LLTVLSGACPQVID 303 (314)
Q Consensus 238 pDpl~~-~~~~il~HMN~dH~d~l~~~~~~~~~~~-~~~a~m~~iD~~G~~lr~-~~~~~r~~F~~p~~ 303 (314)
+||++. .+++||+|||+||+|++.+||++|++.. +.+|+|++||++||+|++ +...+||+|++|+.
T Consensus 2 ~dp~~~~~~~~ii~HMN~DH~d~l~~~~~~~~~~~~~~~a~m~~id~~G~~l~~~~~~~~ripF~~p~~ 70 (83)
T PF10615_consen 2 PDPLAPEAAARIIEHMNDDHADDLLLYARHYGGVPDAASARMTDIDRDGFDLRVGGDQDVRIPFPPPVT 70 (83)
T ss_dssp --TTTTHHHHHHHHHHHHH-HHHHHHHHHHHHT-SSSSS-EEEEEETTEEEEEETTTEEEEEE-SS---
T ss_pred cCcccHHHHHHHHHHHHHhHHHHHHHHHHhcCCCCCCCCEEEEEEeccccEEEEeCCcceEcCCCCCCC
Confidence 799995 8999999999999999999999999995 799999999999999999 66778888877753
No 4
>PRK03467 hypothetical protein; Provisional
Probab=99.70 E-value=1e-15 Score=129.78 Aligned_cols=127 Identities=16% Similarity=0.133 Sum_probs=108.2
Q ss_pred HHHHHHHHhcCCeEEEEeecCCCCCceeEEEeeEEEcCCCC-EEEEecCcchHhHhhhcCCceEEEEeeCCCCC-cceEE
Q 021298 89 LEEIRTVLDRSVRGMLSTFSQKYEGYPSGSMVDFACDADGT-PILAVSSLAVHTKDLLANPKCSLLVARDPEDR-TDLVI 166 (314)
Q Consensus 89 ae~ar~LL~~~~~g~LATv~~~~dG~P~~S~v~ya~d~dG~-~~l~vS~~s~htrNL~~dPrvSL~V~~dp~d~-~~~rV 166 (314)
.+.+.++|++.+..+|||.+ ++.||+..+.|++|+++. +||..++.++|.+|+.+||+|+.+|..++.+. .-..|
T Consensus 7 ~~~I~~fl~~~hvltLa~~~---~~~~w~A~cFY~fd~~~~~l~~~S~~~TrH~~~~~~np~VAgTI~~~~~~v~~I~Gv 83 (144)
T PRK03467 7 LTAISRWLAKQHVVTLCVGQ---EGELWCANCFYVFDAQKVAFYLLTEEKTRHGQMMGPNAQVAGTVNGQPKTVALIRGV 83 (144)
T ss_pred HHHHHHHHHhCcEEEEEEEc---CCCcceEEEEEEEcCCCeEEEEEcCCCCHHHHHHhhCCCEEEEEcCCCcchhhceEE
Confidence 46799999999999999997 588999999999997755 45555566899999999999999999876552 34589
Q ss_pred EEEEEEEEeChhHHHHHHHHHHHhCCCCccccCCCeEEEEEEEeEEEEEc---ccccc
Q 021298 167 TLHGDATSVAEKDKAAIRAVYLAKHPNAFWVDFGDFQFMRIEPKAVRYVS---GVATA 221 (314)
Q Consensus 167 tl~G~a~~v~~ee~~~l~~~y~~rhP~~~~~~~~df~l~rL~p~~v~~v~---GFG~a 221 (314)
++.|.+..++++|...++++|.+|||.+.... ..+|+|++.++.+++ |||+.
T Consensus 84 Q~~G~~~~l~~~e~~~Ar~~Y~~rFP~A~~~~---~~iw~l~l~~iK~tdN~LGFgkK 138 (144)
T PRK03467 84 QFKGEIRRLEGEESDAARKRYNRRFPVARALS---APVWELRLDEIKMTDNTLGFGKK 138 (144)
T ss_pred EEEEEEEecChhHHHHHHHHHHHhCcchhccC---CceEEEEEEEEEEeccccccccc
Confidence 99999999998887889999999999883332 458999999999999 99984
No 5
>KOG3374 consensus Cellular repressor of transcription [Transcription]
Probab=99.63 E-value=2.4e-15 Score=129.15 Aligned_cols=149 Identities=20% Similarity=0.327 Sum_probs=126.4
Q ss_pred hcCCCCHHHHHHHHhcCCeEEEEeecCCC--CCceeEEEeeEEEc----CCCCEEEEecCcchHhHhhhcCCceEEEEee
Q 021298 83 AARLPPLEEIRTVLDRSVRGMLSTFSQKY--EGYPSGSMVDFACD----ADGTPILAVSSLAVHTKDLLANPKCSLLVAR 156 (314)
Q Consensus 83 a~~~s~ae~ar~LL~~~~~g~LATv~~~~--dG~P~~S~v~ya~d----~dG~~~l~vS~~s~htrNL~~dPrvSL~V~~ 156 (314)
+.|...|..||.+..++.+|+|+|++.+. .|+|++..+.+.-. +.|.+||+++++....+|+++|++++|++.+
T Consensus 39 p~r~d~A~iAR~lvh~~~Wgal~TlSt~e~vkG~Pf~nViS~sDg~p~~gtG~pyFyLt~Ld~t~~n~qkd~~atL~~s~ 118 (210)
T KOG3374|consen 39 PQRLDHAKIARDLVHRANWGALGTLSTNERVKGYPFVNVISISDGDPNNGTGRPYFYLTDLDFTGPNWQKDNKATLLFSD 118 (210)
T ss_pred CchhhHHHHHHHHhhhcccceeeeeeecccccCCccceEEEccCCCCcCCCCceEEEeccCCCCCcccccCCceeEEeec
Confidence 34455677799999999999999998753 79999999886521 3489999999999999999999999999976
Q ss_pred C-----------CCCCcceEEEEEEEEEEeChh--HHHHHHHHHHHhCCCC-ccccCCCeEEEEEEEeEEEEEccccccc
Q 021298 157 D-----------PEDRTDLVITLHGDATSVAEK--DKAAIRAVYLAKHPNA-FWVDFGDFQFMRIEPKAVRYVSGVATAL 222 (314)
Q Consensus 157 d-----------p~d~~~~rVtl~G~a~~v~~e--e~~~l~~~y~~rhP~~-~~~~~~df~l~rL~p~~v~~v~GFG~a~ 222 (314)
. |..+.+.+++++|++..+++. +.+...+.|..|||++ .|...+.|.|-+|++..|.+.+=||..
T Consensus 119 ~qt~~Ck~~g~DPm~PtC~~~mlsG~v~k~~~~~~~~~~~~~alf~rHPem~~w~~~hn~~~~~l~isni~vld~~ggp- 197 (210)
T KOG3374|consen 119 EQTLRCKEGGKDPMEPTCARSMLSGQVKKMDPSDKSYQPSLDALFRRHPEMINWVKAHNFYLCELEISNIFVLDFYGGP- 197 (210)
T ss_pred cccchhhcCCCCCCCchhhhheecceEEEeCCcchhhhhhhhhHhhcCHhHcCCccccceEEEEEeeeeEEEEEecCCC-
Confidence 2 334678899999999999864 4555668999999999 899999999999999999999999875
Q ss_pred cCCCCCCHHHHhh
Q 021298 223 LGSGEFSKEEYQA 235 (314)
Q Consensus 223 ~~~~~v~~eey~~ 235 (314)
+-|+++||.+
T Consensus 198 ---~~vs~~~yy~ 207 (210)
T KOG3374|consen 198 ---HKVSASDYYA 207 (210)
T ss_pred ---cccCHHHhcc
Confidence 4799999985
No 6
>TIGR03668 Rv0121_F420 PPOX class probable F420-dependent enzyme, Rv0121 family. A Genome Properties metabolic reconstruction for F420 biosynthesis shows that slightly over 10 percent of all prokaryotes with fully sequenced genomes, including about two thirds of the Actinomycetales, make F420. A variant of the Partial Phylogenetic Profiling algorithm, SIMBAL, shows that this protein likely binds F420 in a cleft similar to that in which the homologous enzyme pyridoxamine phosphate oxidase (PPOX) binds FMN.
Probab=99.61 E-value=2.6e-14 Score=121.52 Aligned_cols=121 Identities=24% Similarity=0.175 Sum_probs=90.2
Q ss_pred HHHHHHHhcCCeEEEEeecCCCCCceeEEEeeEEEc------CCCCEEEEe------cCcchHhHhhhcCCceEEEEeeC
Q 021298 90 EEIRTVLDRSVRGMLSTFSQKYEGYPSGSMVDFACD------ADGTPILAV------SSLAVHTKDLLANPKCSLLVARD 157 (314)
Q Consensus 90 e~ar~LL~~~~~g~LATv~~~~dG~P~~S~v~ya~d------~dG~~~l~v------S~~s~htrNL~~dPrvSL~V~~d 157 (314)
++++++|++..+|+|||+++ ||.|++++++|+++ +++.+|+++ ...+.|.+||++||||||+|...
T Consensus 3 ~e~~~~L~~~~~~~LaTv~~--dG~P~vvPv~f~~d~~~~~~~~~~i~~~~~~~~~t~~~~~K~~ni~~nPrVs~~v~~~ 80 (141)
T TIGR03668 3 FEARTRFAQARVARLATVSP--DGEPHLVPVVFAVGAGAVAAGDAVIYTAVDAKPKTTPRLRRLRNIEENPRVSLLVDRY 80 (141)
T ss_pred HHHHHHHccCCEEEEEEECC--CCCeEEEeEEEEEccccccCCCCEEEEEecCCCCcccccHHHHHHhhCCCEEEEEecC
Confidence 57999999999999999998 99999999999998 367776653 34568999999999999988642
Q ss_pred CCCC-cceEEEEEEEEEEeChh--HHHHHHHHHHHhCCCCccccCCCeEEEEEEEeEEE
Q 021298 158 PEDR-TDLVITLHGDATSVAEK--DKAAIRAVYLAKHPNAFWVDFGDFQFMRIEPKAVR 213 (314)
Q Consensus 158 p~d~-~~~rVtl~G~a~~v~~e--e~~~l~~~y~~rhP~~~~~~~~df~l~rL~p~~v~ 213 (314)
..+. ....|++.|+++.++++ +.+.+.+.+.++|.... ....+..+++|+|+++.
T Consensus 81 ~~~~~~~~~v~v~G~a~~~~d~~~e~~~~~~~l~~kY~~~~-~~~~~~~vi~i~~~r~~ 138 (141)
T TIGR03668 81 DDDWTRLWWVRADGRAEILRPGEEEHAAAVRLLRAKYHQYQ-AVPLEGPVIAIRVERWA 138 (141)
T ss_pred CCCccceEEEEEEEEEEEecCCchhhHHHHHHHHHHhHhhh-hcCCCCcEEEEEEEEEe
Confidence 2221 23469999999998764 44455555555554311 11223788999999765
No 7
>TIGR03667 Rv3369 PPOX class probable F420-dependent enzyme, Rv3369 family. A Genome Properties metabolic reconstruction for F420 biosynthesis shows that slightly over 10 percent of all prokaryotes with fully sequenced genomes, including about two thirds of the Actinomycetales, make F420. A variant of the Partial Phylogenetic Profiling algorithm, SIMBAL, shows that this protein likely binds F420 in a cleft similar to that in which the homologous enzyme pyridoxamine phosphate oxidase (PPOX) binds FMN.
Probab=99.54 E-value=1.7e-13 Score=114.61 Aligned_cols=117 Identities=22% Similarity=0.236 Sum_probs=91.4
Q ss_pred HHHHHHHhcCCeEEEEeecCCCCCceeEEEeeEEEcCCCCEEEEecCcchHhHhhhcCCceEEEEeeCCCCCcceEEEEE
Q 021298 90 EEIRTVLDRSVRGMLSTFSQKYEGYPSGSMVDFACDADGTPILAVSSLAVHTKDLLANPKCSLLVARDPEDRTDLVITLH 169 (314)
Q Consensus 90 e~ar~LL~~~~~g~LATv~~~~dG~P~~S~v~ya~d~dG~~~l~vS~~s~htrNL~~dPrvSL~V~~dp~d~~~~rVtl~ 169 (314)
++++++|++..+++|||+++ ||.|++.+|+|.++ +|.++|+....+.|.+||++||+|+|++.+++.. ...+.+.
T Consensus 5 ~~~~~~L~~~~~~~LaT~~~--dG~P~~~P~~~~~~-d~~l~~~t~~~s~K~~~l~~np~Vsl~~~~~~~~--~~~v~v~ 79 (130)
T TIGR03667 5 AKVARRLREESIVWLTTVRR--SGQPQPVPVWFLWD-GTEFLIYSRPQAAKLRNIRRNPRVSLHLNSDGRG--GDVVVFT 79 (130)
T ss_pred HHHHHHhcCCCeEEEEEECC--CCceEEEEEEEEEE-CCEEEEEeCCcCHHHHHHhhCCcEEEEEEcCCCC--ceEEEEE
Confidence 67999999999999999998 99999999999987 7888888888899999999999999999764322 2478999
Q ss_pred EEEEEeChhHHHHHHHHHHHhCCCC--cc-c-----cCCCeEEEEEEEeE
Q 021298 170 GDATSVAEKDKAAIRAVYLAKHPNA--FW-V-----DFGDFQFMRIEPKA 211 (314)
Q Consensus 170 G~a~~v~~ee~~~l~~~y~~rhP~~--~~-~-----~~~df~l~rL~p~~ 211 (314)
|+++.+++.+.....+.|.++++.. .+ . ..+...++||+|++
T Consensus 80 G~a~i~~d~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (130)
T TIGR03667 80 GTAEVVADAPPAREIPAYLAKYREDAARIGMTPERFAADYSVPLRVTPER 129 (130)
T ss_pred EEEEEeCCchhHHHHHHHHHHhhHHHhcCCCChhHhhhccceeEEEeccc
Confidence 9999998654333344555555542 11 1 22334699999975
No 8
>TIGR03666 Rv2061_F420 PPOX class probable F420-dependent enzyme, Rv2061 family. A Genome Properties metabolic reconstruction for F420 biosynthesis shows that slightly over 10 percent of all prokaryotes with fully sequenced genomes, including about two thirds of the Actinomycetales, make F420. A variant of the Partial Phylogenetic Profiling algorithm, SIMBAL, shows that this protein likely binds F420 in a cleft similar to that in which the homologous enzyme pyridoxamine phosphate oxidase (PPOX) binds FMN.
Probab=99.53 E-value=4.1e-13 Score=112.88 Aligned_cols=112 Identities=17% Similarity=0.179 Sum_probs=90.5
Q ss_pred HHHhcCCeEEEEeecCCCCCceeEEEeeEEEcCCCCEEEEecCcchHhHhhhcCCceEEEEeeCCCCCcceEEEEEEEEE
Q 021298 94 TVLDRSVRGMLSTFSQKYEGYPSGSMVDFACDADGTPILAVSSLAVHTKDLLANPKCSLLVARDPEDRTDLVITLHGDAT 173 (314)
Q Consensus 94 ~LL~~~~~g~LATv~~~~dG~P~~S~v~ya~d~dG~~~l~vS~~s~htrNL~~dPrvSL~V~~dp~d~~~~rVtl~G~a~ 173 (314)
..|+++++|+|+|+++ ||.|++++++|+++ +|.+||+.+..+.|.+||++||+|+|++.+... ....|++.|+++
T Consensus 7 ~~L~~~~~~~LaT~~~--dG~P~~~Pv~~~~d-~g~l~f~t~~~~~K~~nl~~np~Vsl~v~~~~~--~~~~v~v~G~A~ 81 (132)
T TIGR03666 7 ADLARARYALLTTFRK--DGTPVPTPVWAAVD-GDKLLVRTKEDSWKVKRIRNNPRVTLAPCDRRG--RPTGPVVPGRAR 81 (132)
T ss_pred HHhccCcEEEEEEECC--CCcEEEEEEEEEEE-CCEEEEEECCcCHHHHHHHhCCCEEEEEECCCC--CEeEEEEEEEEE
Confidence 5688999999999998 99999999999987 688999999989999999999999999875322 134799999999
Q ss_pred EeChhHHHHHHHHHHHhCCCC--c--c---c--cCCCeEEEEEEEe
Q 021298 174 SVAEKDKAAIRAVYLAKHPNA--F--W---V--DFGDFQFMRIEPK 210 (314)
Q Consensus 174 ~v~~ee~~~l~~~y~~rhP~~--~--~---~--~~~df~l~rL~p~ 210 (314)
.++++|...+.+++.++|+.. . + . ..+....+||.|+
T Consensus 82 ~v~~~e~~~~~~~l~~kY~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 127 (132)
T TIGR03666 82 ILDGAETARARDLLARRYGLQGRLFPLFSKLRRGRDRNVGLELTPA 127 (132)
T ss_pred EEcchhHHHHHHHHHHHcCChhhhhhhHHHhhccCCCceEEEEEec
Confidence 997777777778888888764 1 2 1 2345566777774
No 9
>PF01243 Pyridox_oxidase: Pyridoxamine 5'-phosphate oxidase; InterPro: IPR011576 Pyridoxamine 5'-phosphate oxidase (PNPOx; 1.4.3.5 from EC) is a FMN flavoprotein that catalyses the oxidation of pyridoxamine-5-P (PMP) and pyridoxine-5-P (PNP) to pyridoxal-5-P (PLP). This reaction serves as the terminal step in the de novo biosynthesis of PLP in Escherichia coli and as a part of the salvage pathway of this coenzyme in both E. coli and mammalian cells [, ]. The binding sites for FMN and for substrate have been highly conserved throughout evolution. This entry represents the FMN-binding domain present in pyridoxamine 5'-phosphate oxidases, as well as in a number of proteins that have not been demonstrated to have enzymatic activity. The FMN-binding domain has a structure consisting of a beta-barrel with Greek key topology, and is related to the ferredoxin reductase-like FAD-binding domain. PNPOx has a different dimerisation mode than that found in flavin reductases, which also carry an FMN-binding domain with a similar topology. ; GO: 0004733 pyridoxamine-phosphate oxidase activity, 0010181 FMN binding, 0055114 oxidation-reduction process; PDB: 2IG6_A 1CI0_A 2HQ7_B 2HTD_B 3EC6_A 1WV4_B 1DNL_A 1G76_A 1G79_A 1G77_A ....
Probab=99.51 E-value=3.9e-13 Score=103.50 Aligned_cols=86 Identities=30% Similarity=0.414 Sum_probs=76.3
Q ss_pred HHHHHHHhcCCeEEEEeecCCCCCceeEEEeeEEEcCCC-CEEEEecCcchHhHhhhcCCceEEEEeeCCCCCcceEEEE
Q 021298 90 EEIRTVLDRSVRGMLSTFSQKYEGYPSGSMVDFACDADG-TPILAVSSLAVHTKDLLANPKCSLLVARDPEDRTDLVITL 168 (314)
Q Consensus 90 e~ar~LL~~~~~g~LATv~~~~dG~P~~S~v~ya~d~dG-~~~l~vS~~s~htrNL~~dPrvSL~V~~dp~d~~~~rVtl 168 (314)
|+++++|++.++++|||+++ +|.|++++++|..+.++ .++|.....+.|++||++||+|+|++.+.. .....+++
T Consensus 3 ~~~~~~l~~~~~~~laTv~~--dG~P~~~~v~~~~~~~~~~i~~~t~~~~~k~~nl~~np~v~l~~~~~~--~~~~~v~~ 78 (89)
T PF01243_consen 3 EEIREFLEESKYCVLATVDE--DGRPHASPVWFVYDDDDNTIYFATNPGSRKVRNLRRNPRVSLLFCDPE--GTRRGVRV 78 (89)
T ss_dssp HHHHHHHHSTSEEEEEEEET--TSEEEEEEEEEEEECTTTEEEEEEETTSHHHHHHHHSTEEEEEEEETT--TTTEEEEE
T ss_pred HHHHHHhcCCCEEEEEEECC--CCCEEEEEEeeecCCceeEEEEeecCCCCchhhCccCCeEEEEEEEcC--cCceEEEE
Confidence 67999999999999999998 99999999999987554 588888888999999999999999998744 23579999
Q ss_pred EEEEEEeChhH
Q 021298 169 HGDATSVAEKD 179 (314)
Q Consensus 169 ~G~a~~v~~ee 179 (314)
.|+|+.++++|
T Consensus 79 ~G~a~~~~d~E 89 (89)
T PF01243_consen 79 SGTAEILTDEE 89 (89)
T ss_dssp EEEEEEESHHH
T ss_pred EEEEEEEcCCC
Confidence 99999998874
No 10
>TIGR03618 Rv1155_F420 PPOX class probable F420-dependent enzyme. A Genome Properties metabolic reconstruction for F420 biosynthesis shows that slightly over 10 percent of all prokaryotes with fully sequenced genomes, including about two thirds of the Actinomyces, make F420. The Partial Phylogenetic Profiling algorithm identifies this members of this protein family as high-scoring proteins to the F420 biosynthesis profile. A member of this family, Rv1155, was crytallized after expression in Escherichia coli, which does not synthesize F420; the crystal structure shown to resemble FMN-binding proteins, but with a recognizable empty cleft corresponding to, yet differing profounding from, the FMN site of pyridoxine 5'-phosphate oxidase. We propose that this protein family consists of F420-binding enzymes.
Probab=99.42 E-value=6.1e-12 Score=102.16 Aligned_cols=107 Identities=19% Similarity=0.206 Sum_probs=81.3
Q ss_pred EEEeecCCCCCceeEEEeeEEEcC-CCCEEEEecCcchHhHhhhcCCceEEEEeeCCCCCcceEEEEEEEEEEeChh-HH
Q 021298 103 MLSTFSQKYEGYPSGSMVDFACDA-DGTPILAVSSLAVHTKDLLANPKCSLLVARDPEDRTDLVITLHGDATSVAEK-DK 180 (314)
Q Consensus 103 ~LATv~~~~dG~P~~S~v~ya~d~-dG~~~l~vS~~s~htrNL~~dPrvSL~V~~dp~d~~~~rVtl~G~a~~v~~e-e~ 180 (314)
+|||+++ +|.|++++++|+++. ++.++|+.+..+.|.+||++||+|+|++.+.... ..++++.|+++.++++ +.
T Consensus 1 ~LaTv~~--~G~P~~~pv~~~~~~~~~~l~f~t~~~s~k~~~l~~np~v~l~~~~~~~~--~~~v~i~G~a~~v~d~~~~ 76 (117)
T TIGR03618 1 VLATIRA--DGRPQLSPVWFGVDPDGDILVVSTTAGRAKARNLRRDPRVSLSVLDPDFP--YRYVEVEGTAELVEDPDPV 76 (117)
T ss_pred CEEEECC--CCCEEEEEEEEEEcCCCCEEEEEecCCcHhhHhhhhCCeEEEEEECCCCC--ccEEEEEEEEEEecCCccc
Confidence 5899988 899999999999853 4558888888899999999999999999864321 2589999999999864 44
Q ss_pred HHHHHHHHHhCCCC----cc---ccCCCeEEEEEEEeEEE
Q 021298 181 AAIRAVYLAKHPNA----FW---VDFGDFQFMRIEPKAVR 213 (314)
Q Consensus 181 ~~l~~~y~~rhP~~----~~---~~~~df~l~rL~p~~v~ 213 (314)
+.+.+++.++|... .| .+.++..+++|+|++++
T Consensus 77 ~~~~~~l~~~y~~~~~~~~~~~~~~~~~~~~l~i~p~~~~ 116 (117)
T TIGR03618 77 RDLVDRLAERYRGAAGEDEYRRPMVDPRRVVVRVTPTRVY 116 (117)
T ss_pred HHHHHHHHHHHcccccchhcccccCCCCEEEEEEEEEEec
Confidence 55555555555321 12 22366799999999874
No 11
>PF12900 Pyridox_ox_2: Pyridoxamine 5'-phosphate oxidase; InterPro: IPR024747 Pyridoxamine 5'-phosphate oxidase is a FMN flavoprotein that catalyses the oxidation of pyridoxamine-5-P (PMP) and pyridoxine-5-P (PNP) to pyridoxal-5-P (PLP). This entry contains several uncharacterised proteins, some annotated as pyridoxamine 5'-phosphate oxidase-related.; PDB: 3U5W_A 3U0I_A 2X1K_A 1W3Q_A 1W3P_A 1W3O_A 2VPA_A 2X1J_A 1W3R_A 3FKH_A ....
Probab=99.30 E-value=1e-10 Score=99.03 Aligned_cols=119 Identities=26% Similarity=0.362 Sum_probs=92.8
Q ss_pred HHHHHHHHhcCCeEEEEeecCCCCCceeEEEeeEEEcCCCCEEEEecCcchHhHhhhcCCceEEEEeeC-C----CC---
Q 021298 89 LEEIRTVLDRSVRGMLSTFSQKYEGYPSGSMVDFACDADGTPILAVSSLAVHTKDLLANPKCSLLVARD-P----ED--- 160 (314)
Q Consensus 89 ae~ar~LL~~~~~g~LATv~~~~dG~P~~S~v~ya~d~dG~~~l~vS~~s~htrNL~~dPrvSL~V~~d-p----~d--- 160 (314)
.+++.++|+++.+|+||+.+ +|.|++.|++|+++ +|.+||+.+..+.|..+++++| |++++... . ..
T Consensus 2 ~~e~~~iL~~~~~g~la~~~---~~~Py~vP~~f~~~-~~~ly~h~~~~g~k~~~l~~~p-v~~~~~~~~~~~~~~~~~~ 76 (143)
T PF12900_consen 2 REEIWEILDRAPVGRLAFVD---DGYPYIVPVNFVYD-GGSLYFHGARGGKKIELLRNNP-VCFTVDEVDELVPAESACS 76 (143)
T ss_dssp HHHHHHHHHH-SEEEEEEEE---TTEEEEEEEEEEEE-TTEEEEEECSHSHHHHHHHHEE-EEEEEEEEEEEEETSCGGG
T ss_pred HHHHHHHHhhCCEEEEEEEe---CCEEEEEEEEEEEE-CCEEEEEECCcchHHHHhccCC-eEEEEEecCcEeecccCCc
Confidence 47899999999999999998 58999999999998 6889999888899999999889 99998751 1 11
Q ss_pred --CcceEEEEEEEEEEeCh-hHHHHHHHHHHHhC-CCCccc--------cCCCeEEEEEEEeEEE
Q 021298 161 --RTDLVITLHGDATSVAE-KDKAAIRAVYLAKH-PNAFWV--------DFGDFQFMRIEPKAVR 213 (314)
Q Consensus 161 --~~~~rVtl~G~a~~v~~-ee~~~l~~~y~~rh-P~~~~~--------~~~df~l~rL~p~~v~ 213 (314)
.....|.+.|+++.|++ +|+.++.+.+.+++ |+. |. ......+|||+|+++.
T Consensus 77 ~~~~y~SVi~~G~~~~v~d~~ek~~al~~l~~~~~p~~-~~~~~~~~~~~~~~~~v~ri~i~~~s 140 (143)
T PF12900_consen 77 FSMNYRSVIVFGRAEEVEDEEEKAEALRALLEKYAPGR-WDEIRPFADKELKRTAVYRIDIEELS 140 (143)
T ss_dssp EEEEEEEEEEEEEEEEEHSHHHHHHHHHHHHHHHSTTT-CCCSC---HHHHHTEEEEEEEEEEEE
T ss_pred CcceEEEEEEEEEEEEeCCHHHHHHHHHHHHHhccCCC-cccccccchhhhcCeEEEEEEeEEEE
Confidence 12568999999999965 56666766766655 422 21 1234799999999864
No 12
>COG3467 Predicted flavin-nucleotide-binding protein [General function prediction only]
Probab=99.16 E-value=1.2e-09 Score=95.43 Aligned_cols=122 Identities=23% Similarity=0.257 Sum_probs=91.8
Q ss_pred CCHHHHHHHHhcCCeEEEEeecCCCCCceeEEEeeEEEcCCCCEEEEecCcchHhHhhhcCCceEEEEeeCC--------
Q 021298 87 PPLEEIRTVLDRSVRGMLSTFSQKYEGYPSGSMVDFACDADGTPILAVSSLAVHTKDLLANPKCSLLVARDP-------- 158 (314)
Q Consensus 87 s~ae~ar~LL~~~~~g~LATv~~~~dG~P~~S~v~ya~d~dG~~~l~vS~~s~htrNL~~dPrvSL~V~~dp-------- 158 (314)
...+++..+|+.+.+|.||+.+ +|.||+.++.|+++ +|.+|++.+..++|...|++||.|++.+.+..
T Consensus 11 ~~~~~i~~~l~~~~~~~La~~~---~~~PyivP~~y~~~-~~~lY~h~~~~grk~~~l~~~p~V~~ev~~~~~~~~~~~~ 86 (166)
T COG3467 11 MSDEEIDAILAAGRVGRLAFAG---DGQPYVVPLNYGYE-GGHLYFHGSPEGRKIELLRKNPLVCLEVDEIHGLVLKSPF 86 (166)
T ss_pred CCHHHHHHHHhhCCEEEEEEcC---CCCcEEEEeEeEEe-CCeEEEEeCCcchhhHHhhcCCcEEEEEEccccceecccc
Confidence 3458899999999999999997 57899999999998 57789988888999999999999999998643
Q ss_pred -CCCcceEEEEEEEEEEeChh-HHHHHH----HHHHHhCCCC--c----cc----cCCCeEEEEEEEeEE
Q 021298 159 -EDRTDLVITLHGDATSVAEK-DKAAIR----AVYLAKHPNA--F----WV----DFGDFQFMRIEPKAV 212 (314)
Q Consensus 159 -~d~~~~rVtl~G~a~~v~~e-e~~~l~----~~y~~rhP~~--~----~~----~~~df~l~rL~p~~v 212 (314)
.+..+..|.++|+++.++++ ++..+. +.+...+++. . .. ......+|+++++.+
T Consensus 87 ~~s~~y~SVvv~G~~~~l~~~~~k~~~l~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~i~~~~~ 156 (166)
T COG3467 87 NSSRNYRSVVVFGRAEELSDLEEKAAALDHAWSLLMKGRPNWWEPGGRKEVPETVDSSPHSFFRIKIDEI 156 (166)
T ss_pred cCCcceEEEEEEeEEEEcCChHHHHHHHHHHHHHhcccCcCcCCCCCccccccccccccceEEEEEccee
Confidence 13466799999999999874 444444 4444434332 1 11 222356677776653
No 13
>COG3787 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=99.11 E-value=1.7e-09 Score=89.14 Aligned_cols=126 Identities=13% Similarity=0.148 Sum_probs=105.5
Q ss_pred HHHHHHHhcCCeEEEEeecCCCCCceeEEEeeEEEcCCCCEEEEecCc-chHhHhhhcCCceEEEEeeCCCC-CcceEEE
Q 021298 90 EEIRTVLDRSVRGMLSTFSQKYEGYPSGSMVDFACDADGTPILAVSSL-AVHTKDLLANPKCSLLVARDPED-RTDLVIT 167 (314)
Q Consensus 90 e~ar~LL~~~~~g~LATv~~~~dG~P~~S~v~ya~d~dG~~~l~vS~~-s~htrNL~~dPrvSL~V~~dp~d-~~~~rVt 167 (314)
+++-++|++.+..++|... +|.||+....|++|+...-+|+++.. ..|.+-+..|++|..+|...+.- .....|+
T Consensus 3 ~rI~~flkkq~v~Tw~~~~---e~~~w~asafYvFDek~~ali~~T~e~TrHa~l~~~ns~VAgtv~~qsKtva~ikGVQ 79 (145)
T COG3787 3 TRISRFLKKQHVLTWCVQQ---EGELWCASAFYVFDEKNVALIILTEEKTRHAQLSGPNSAVAGTVAGQSKTVALIKGVQ 79 (145)
T ss_pred hHHHHHHHhhheeeeeeec---CCceeeeeeEEEEcccceEEEEEeccchhHHHhhCCCCceeeEeccCceeeeeeeeee
Confidence 4688999999999999987 69999999999999876555555554 78999999999999999865432 2345899
Q ss_pred EEEEEEEeChhHHHHHHHHHHHhCCCCccccCCCeEEEEEEEeEEEEEc---ccccc
Q 021298 168 LHGDATSVAEKDKAAIRAVYLAKHPNAFWVDFGDFQFMRIEPKAVRYVS---GVATA 221 (314)
Q Consensus 168 l~G~a~~v~~ee~~~l~~~y~~rhP~~~~~~~~df~l~rL~p~~v~~v~---GFG~a 221 (314)
+.|+...+++++.+.++++|.++||.+.... -.+|.|+++.+.+++ |||+.
T Consensus 80 fkge~~~l~~~q~~~Ark~Y~~rfp~akvd~---a~vwqleL~~ikftdNaLG~~kk 133 (145)
T COG3787 80 FKGEISRLSGEQSDAARKAYNRRFPVAKVDS---APVWQLELDEIKFTDNALGFGKK 133 (145)
T ss_pred eeeeehhhhcchHHHHHHHHhccCchhhccc---CceEEeeeeeEEeecccccccce
Confidence 9999999999988899999999999874433 468999999999987 99985
No 14
>PRK05679 pyridoxamine 5'-phosphate oxidase; Provisional
Probab=99.09 E-value=4.5e-09 Score=94.00 Aligned_cols=116 Identities=22% Similarity=0.283 Sum_probs=84.6
Q ss_pred HhcCCeEEEEeecCCCCCceeEEEeeEE-EcCCCCEEEEecCcchHhHhhhcCCceEEEEeeCCCCCcceEEEEEEEEEE
Q 021298 96 LDRSVRGMLSTFSQKYEGYPSGSMVDFA-CDADGTPILAVSSLAVHTKDLLANPKCSLLVARDPEDRTDLVITLHGDATS 174 (314)
Q Consensus 96 L~~~~~g~LATv~~~~dG~P~~S~v~ya-~d~dG~~~l~vS~~s~htrNL~~dPrvSL~V~~dp~d~~~~rVtl~G~a~~ 174 (314)
+...+.++|||++. +|.|++..|.+. ++++| ++|++...++|.++|++||+|+|++.... ....|.|.|.++.
T Consensus 24 ~~~~~~~~lATv~~--dG~P~~R~V~lr~~~~~~-l~f~T~~~S~K~~~l~~np~val~~~~~~---~~~qvrv~G~a~~ 97 (195)
T PRK05679 24 LNDPNAMTLATVDE--DGRPSQRIVLLKGFDERG-FVFYTNYESRKGRQLAANPKAALLFPWKS---LERQVRVEGRVEK 97 (195)
T ss_pred CCCCceEEEEeeCC--CCCEEEEEEEEEEECCCe-EEEEeCCCCHHHHHHhhCCcEEEEEecCC---CCEEEEEEEEEEE
Confidence 55678899999998 899999999884 67655 88888888999999999999999998532 2458899999999
Q ss_pred eChhHHHHHHH------------------------------HHHHhCCCCccccCCCeEEEEEEEeEEEEEcc
Q 021298 175 VAEKDKAAIRA------------------------------VYLAKHPNAFWVDFGDFQFMRIEPKAVRYVSG 217 (314)
Q Consensus 175 v~~ee~~~l~~------------------------------~y~~rhP~~~~~~~~df~l~rL~p~~v~~v~G 217 (314)
+++++.++.-+ .+..++........+.|.+|+|+|+++-|..+
T Consensus 98 ~~~~~~~~~w~~~p~~~r~~~~~~~qg~~i~~~~~~~~~~~~~~~~~~~~~~~~p~~f~~~~l~p~~veflql 170 (195)
T PRK05679 98 VSAEESDAYFASRPRGSQIGAWASKQSRPISSRAALEAKFAEVKAKFAQGEVPRPPHWGGYRVVPESIEFWQG 170 (195)
T ss_pred eCHHHHHHHHHhCCHhhhceeeeCCCCCccCCHHHHHHHHHHHHhhccCCCCCCCCccEEEEEECCEEEEcCC
Confidence 88763321111 01111111111223569999999999988665
No 15
>COG3871 Uncharacterized stress protein (general stress protein 26) [General function prediction only]
Probab=98.80 E-value=5.5e-08 Score=82.10 Aligned_cols=117 Identities=21% Similarity=0.398 Sum_probs=91.7
Q ss_pred HHHHHHHhcCCeEEEEeecCCCCCceeEEEeeEEEcCC-CCEEEEecCcchHhHhhhcCCceEEEEeeCCCCCcceEEEE
Q 021298 90 EEIRTVLDRSVRGMLSTFSQKYEGYPSGSMVDFACDAD-GTPILAVSSLAVHTKDLLANPKCSLLVARDPEDRTDLVITL 168 (314)
Q Consensus 90 e~ar~LL~~~~~g~LATv~~~~dG~P~~S~v~ya~d~d-G~~~l~vS~~s~htrNL~~dPrvSL~V~~dp~d~~~~rVtl 168 (314)
.....+++....|+|+|+.. +|.|+.-+|.|--|+. |++||..+..++++..|+.||+|++++..+.. ...|.+
T Consensus 8 ~~~~~~~e~~kv~~l~tv~~--~g~phsRpM~f~hdg~~~tiwf~T~kds~~v~eik~n~~v~v~~~~~~~---~~fv~v 82 (145)
T COG3871 8 QALAELLEGSKVGMLATVQE--NGHPHSRPMTFNHDGPKGTIWFFTNKDSRKVEEIKKNPKVCVLFGYDDH---DAFVEV 82 (145)
T ss_pred HHHHHHHhhCceEEEEEecC--CCCccccceeccCCCCcccEEeeccCchHHHHHHhhCCcEEEEEecCCC---cceEEE
Confidence 34678899999999999998 8999999998654432 89999898899999999999999999986433 468999
Q ss_pred EEEEEEeChhHH-----HHHHHHHHHhCCCCccccCCCeEEEEEEEeEEEEEc
Q 021298 169 HGDATSVAEKDK-----AAIRAVYLAKHPNAFWVDFGDFQFMRIEPKAVRYVS 216 (314)
Q Consensus 169 ~G~a~~v~~ee~-----~~l~~~y~~rhP~~~~~~~~df~l~rL~p~~v~~v~ 216 (314)
.|+++.+++... ....+.|. |.. .+.|++.+++|+|+++.|..
T Consensus 83 ~Gtael~~dra~~d~~W~~~~~~wF---e~G--kedP~l~~Lkv~~e~i~yw~ 130 (145)
T COG3871 83 SGTAELVEDRAKIDELWTSVLEAWF---EQG--KEDPDLTMLKVTAEDIDYWN 130 (145)
T ss_pred EEEEEeeccHHHHHHhhhhhHHHHH---hcC--CCCCCeEEEEEchhHhHHHh
Confidence 999999987532 22222332 211 24588999999999998854
No 16
>COG0748 HugZ Putative heme iron utilization protein [Inorganic ion transport and metabolism]
Probab=98.76 E-value=1e-09 Score=100.20 Aligned_cols=135 Identities=24% Similarity=0.295 Sum_probs=102.5
Q ss_pred cCCCCHHHHHHHHhcCCeEEEEeecCCCCCceeEEEeeEEEcCCCCEEEEecCcchHhHhhhcCCceEEEEeeCCCCC--
Q 021298 84 ARLPPLEEIRTVLDRSVRGMLSTFSQKYEGYPSGSMVDFACDADGTPILAVSSLAVHTKDLLANPKCSLLVARDPEDR-- 161 (314)
Q Consensus 84 ~~~s~ae~ar~LL~~~~~g~LATv~~~~dG~P~~S~v~ya~d~dG~~~l~vS~~s~htrNL~~dPrvSL~V~~dp~d~-- 161 (314)
.|++ .+++.+-....+..|+|++. +|.|-+|..++.++ ++.+||++|..++|++|+..+|.+|+++.+|+...
T Consensus 81 ~Rl~--~e~~afr~~~~sv~lat~~~--~g~~~~syAp~~~~-~~d~~iyis~~arh~~N~~~~p~vs~m~iedea~a~s 155 (245)
T COG0748 81 PRLT--LEIEAFRLEFDSVALATLRE--RGLPRASYAPLYVD-DGDYYIYISEIARHARNLGFNPKVSVMFIEDEAKAKS 155 (245)
T ss_pred cchh--HHHHHHHhccchHHHhhhhh--cCCcCCCcCceEec-CCceEEEEehHHHHhhccCcCCchhhheecCchhhhh
Confidence 4554 47889999999999999998 89999999999987 56799999999999999999999999998765321
Q ss_pred --cceEEEEEEEEEEeCh-hHHHHHHHHHHHhCCC-C-ccccCCCeEEEEEEEeEEEEEcccccccc
Q 021298 162 --TDLVITLHGDATSVAE-KDKAAIRAVYLAKHPN-A-FWVDFGDFQFMRIEPKAVRYVSGVATALL 223 (314)
Q Consensus 162 --~~~rVtl~G~a~~v~~-ee~~~l~~~y~~rhP~-~-~~~~~~df~l~rL~p~~v~~v~GFG~a~~ 223 (314)
.+.|++..-.+..++. +.+..+...+..++.. + .....++|.++.+++.+..++-|||++|.
T Consensus 156 ~~~r~rl~~hmnAd~~eai~~yaqv~~~~~e~~~~~I~~Id~~gdfll~~l~~~~gl~v~gFgqa~~ 222 (245)
T COG0748 156 AFARKRLREHMNADHAEAIAEYAQVLAQLAEATGGRIKGIDAMGDFLLFQLTPGQGLFVKGFGQAYA 222 (245)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhhcchhhcccccccceeeeccCCCceEEeccchhhc
Confidence 2235544444444432 2233444444445554 2 34567899999999999999999999984
No 17
>TIGR00558 pdxH pyridoxamine-phosphate oxidase. This model is similar to Pyridox_oxidase from PFAM but is designed to find only true pyridoxamine-phosphate oxidase and to ignore the related protein PhzG involved in phenazine biosynthesis. This protein from E. coli was characterized as a homodimer with two FMN per dimer.
Probab=98.72 E-value=6.3e-07 Score=81.50 Aligned_cols=79 Identities=16% Similarity=0.203 Sum_probs=64.2
Q ss_pred HhcCCeEEEEeecCCCCCceeEEEeeEEEcCCCCEEEEecCcchHhHhhhcCCceEEEEeeCCCCCcceEEEEEEEEEEe
Q 021298 96 LDRSVRGMLSTFSQKYEGYPSGSMVDFACDADGTPILAVSSLAVHTKDLLANPKCSLLVARDPEDRTDLVITLHGDATSV 175 (314)
Q Consensus 96 L~~~~~g~LATv~~~~dG~P~~S~v~ya~d~dG~~~l~vS~~s~htrNL~~dPrvSL~V~~dp~d~~~~rVtl~G~a~~v 175 (314)
+...+.++|||++. +|.|.+-+|.+-..+++.++|++...+.|.++|++||+|+|++.... ....|.|.|+++.+
T Consensus 46 ~~~~~~~~LaTvd~--~G~P~~R~v~lr~~~~~~l~F~T~~~S~K~~eL~~np~v~l~f~~~~---~~~qvrv~G~a~~~ 120 (217)
T TIGR00558 46 LTEPNAMTLSTVDE--SGRPSSRMVLLKELDERGFVFYTNYGSRKGHQIETNPNAALVFFWPD---LERQVRVEGKVEKL 120 (217)
T ss_pred CCCCceEEEEEECC--CCCEEEEEEEEEEECCCcEEEEECCCChHHHHHHhCCcEEEEEEeCC---CCEEEEEEEEEEEC
Confidence 35567799999988 89999988877433344588989889999999999999999998632 24689999999998
Q ss_pred ChhH
Q 021298 176 AEKD 179 (314)
Q Consensus 176 ~~ee 179 (314)
++++
T Consensus 121 ~~~~ 124 (217)
T TIGR00558 121 PREE 124 (217)
T ss_pred CHHH
Confidence 8753
No 18
>COG0259 PdxH Pyridoxamine-phosphate oxidase [Coenzyme metabolism]
Probab=98.64 E-value=7.2e-07 Score=79.27 Aligned_cols=133 Identities=22% Similarity=0.291 Sum_probs=97.8
Q ss_pred hHHHhhHHhHHhhcCCCCHHHHHHHHhcCCeEEEEeecCCCCCceeEEEeeEE-EcCCCCEEEEecCcchHhHhhhcCCc
Q 021298 71 NVFELIQKHQEAAARLPPLEEIRTVLDRSVRGMLSTFSQKYEGYPSGSMVDFA-CDADGTPILAVSSLAVHTKDLLANPK 149 (314)
Q Consensus 71 ~~~~~~~~~~~~a~~~s~ae~ar~LL~~~~~g~LATv~~~~dG~P~~S~v~ya-~d~dG~~~l~vS~~s~htrNL~~dPr 149 (314)
+=+.+|++--+.|.+- =+...+-++|||+++ +|.|.+-.|-.. +|+.| ++|++.-.|+|.+.|.+||.
T Consensus 26 ~P~~lF~~Wl~eA~~~--------~~~ePnAm~lATvd~--~G~P~~R~VLLK~~DerG-fvFyTN~~S~Kg~eLa~np~ 94 (214)
T COG0259 26 NPLTLFRRWLEEAIRA--------EVNEPNAMTLATVDE--QGRPSSRIVLLKELDERG-FVFYTNYGSRKGRELAANPY 94 (214)
T ss_pred CHHHHHHHHHHHHHhc--------ccCCCceeEEEeecC--CCCceeeEEEecccCCCc-EEEEeccCCcchhhHhhCcc
Confidence 4567777776655542 167788999999998 999998887654 56666 67889889999999999999
Q ss_pred eEEEEeeCCCCCcceEEEEEEEEEEeChhHHH------------------------------HHHHHHHHhCCCCccccC
Q 021298 150 CSLLVARDPEDRTDLVITLHGDATSVAEKDKA------------------------------AIRAVYLAKHPNAFWVDF 199 (314)
Q Consensus 150 vSL~V~~dp~d~~~~rVtl~G~a~~v~~ee~~------------------------------~l~~~y~~rhP~~~~~~~ 199 (314)
+++++...+. ...|.+.|.++.|+++|.+ ...+.|.++|+.....-.
T Consensus 95 Aal~F~W~~L---~RQVrv~G~ve~vs~eesd~Yf~sRPr~S~iGAWAS~QS~~i~~r~~Le~~~ae~~~kf~~~~iP~P 171 (214)
T COG0259 95 AALLFPWKEL---ERQVRVEGRVERVSDEESDAYFASRPRGSQIGAWASKQSRPIASRAALEAKVAELTAKFADGEIPRP 171 (214)
T ss_pred eeEEecchhc---cceEEEeeeeeeCCHHHHHHHHhcCCCcCccchhhccCccccCCHHHHHHHHHHHHHhcCCCCCCCC
Confidence 9999975332 3479999999999876432 122334456665432223
Q ss_pred CCeEEEEEEEeEEEEEcc
Q 021298 200 GDFQFMRIEPKAVRYVSG 217 (314)
Q Consensus 200 ~df~l~rL~p~~v~~v~G 217 (314)
+.+.-|||.|+.|.|-.|
T Consensus 172 ~~WgG~ri~p~~iEFWqg 189 (214)
T COG0259 172 PHWGGFRIVPESIEFWQG 189 (214)
T ss_pred CCccceEeeeeEEEEecC
Confidence 456789999999998654
No 19
>PRK06733 hypothetical protein; Provisional
Probab=98.45 E-value=7.7e-06 Score=70.18 Aligned_cols=108 Identities=17% Similarity=0.214 Sum_probs=84.2
Q ss_pred HHHHHHHhcCCeEEEEeecCCCCCceeEEEeeEE--EcCCCCEEEEecCcchHhHhhhcCCceEEEEeeCCCCCcceEEE
Q 021298 90 EEIRTVLDRSVRGMLSTFSQKYEGYPSGSMVDFA--CDADGTPILAVSSLAVHTKDLLANPKCSLLVARDPEDRTDLVIT 167 (314)
Q Consensus 90 e~ar~LL~~~~~g~LATv~~~~dG~P~~S~v~ya--~d~dG~~~l~vS~~s~htrNL~~dPrvSL~V~~dp~d~~~~rVt 167 (314)
++..++|+....++|+|++. .+|.|+++++.++ .| +..+.|.....+.-.+||++||+++|.+.++. ...+
T Consensus 11 ~el~~~L~~~~~~~laTv~k-edG~Pnv~~Iswv~a~d-~~tIr~A~~~~skT~~NLk~Np~v~I~~~~~~-----~~yq 83 (151)
T PRK06733 11 EDLVQLLRKERIVTLATTDF-EKQVPNVSAISWVYAVS-KTSIRFAVDQRSRIVENIRHNPGVVLTIIANE-----SVYS 83 (151)
T ss_pred HHHHHHHcCCceEEEEEEcc-CCCceeEEEEEEEEEcC-CCEEEEEEccCcHhHHHHhhCCcEEEEEEeCC-----cEEE
Confidence 68999999999999999993 1799999999754 55 57788888888999999999999999998742 2489
Q ss_pred EEEEEEEeChhHHHHHHHHHHHhCCCCccccCCCeEEEEEEEeEEEEEccccc
Q 021298 168 LHGDATSVAEKDKAAIRAVYLAKHPNAFWVDFGDFQFMRIEPKAVRYVSGVAT 220 (314)
Q Consensus 168 l~G~a~~v~~ee~~~l~~~y~~rhP~~~~~~~~df~l~rL~p~~v~~v~GFG~ 220 (314)
+.|.++.+.+.- . ..| -...++.+++++|+=+-=+|.
T Consensus 84 IkG~a~i~~e~i----e-----~vp-------lk~s~vei~I~eVrdv~FyGa 120 (151)
T PRK06733 84 ISGAAEILTDRM----E-----GVP-------LKLALIEVNVEEVRDVMFYGA 120 (151)
T ss_pred EEEEEEEEeeec----c-----ccc-------ceEEEEEEEEEEEEEeeeccc
Confidence 999998876430 0 001 136899999999985554454
No 20
>PLN03049 pyridoxine (pyridoxamine) 5'-phosphate oxidase; Provisional
Probab=98.42 E-value=8.7e-06 Score=81.81 Aligned_cols=116 Identities=22% Similarity=0.266 Sum_probs=84.2
Q ss_pred HhcCCeEEEEeecCCCCCceeEEEeeEE-EcCCCCEEEEecCcchHhHhhhcCCceEEEEeeCCCCCcceEEEEEEEEEE
Q 021298 96 LDRSVRGMLSTFSQKYEGYPSGSMVDFA-CDADGTPILAVSSLAVHTKDLLANPKCSLLVARDPEDRTDLVITLHGDATS 174 (314)
Q Consensus 96 L~~~~~g~LATv~~~~dG~P~~S~v~ya-~d~dG~~~l~vS~~s~htrNL~~dPrvSL~V~~dp~d~~~~rVtl~G~a~~ 174 (314)
+...+.++|||+++ +|.|.+-.|-+- +|++| ++|++...|+|.++|.+||+|+|++...+. ...|.+.|.++.
T Consensus 286 ~~ep~am~LATvd~--~G~P~~R~VlLk~~d~~g-~~F~Tn~~S~K~~eL~~Np~aal~F~w~~~---~rQvRv~G~a~~ 359 (462)
T PLN03049 286 LREPNAMTLATAGE--DGRPSARIVLLKGVDKRG-FVWYTNYDSRKAHELSANPKASLVFYWDGL---HRQVRVEGSVEK 359 (462)
T ss_pred CCCCCeeEEEEECC--CCCeeEEEEEEeEEcCCc-EEEEECCCCHHHHHHhhCCcEEEEeecCCC---CEEEEEEEEEEE
Confidence 45678999999998 999999887653 66665 588888889999999999999999986432 457999999999
Q ss_pred eChhHHHHH------------------------------HHHHHHhCCCC-ccccCCCeEEEEEEEeEEEEEcc
Q 021298 175 VAEKDKAAI------------------------------RAVYLAKHPNA-FWVDFGDFQFMRIEPKAVRYVSG 217 (314)
Q Consensus 175 v~~ee~~~l------------------------------~~~y~~rhP~~-~~~~~~df~l~rL~p~~v~~v~G 217 (314)
+++++.++. .+.+..+++.. .....+.|..|++.|+++-|..|
T Consensus 360 ~~~~~s~~yf~~rp~~sq~~a~as~qs~~i~~~~~l~~~~~~~~~~~~~~~~~p~p~~w~g~~v~p~~iEfwq~ 433 (462)
T PLN03049 360 VSEEESDQYFHSRPRGSQIGALVSKQSTVIPGRHILDQSYKELEAKYADSSAIPKPKHWGGYRLKPELIEFWQG 433 (462)
T ss_pred CCHHHHHHHHHhCChhhhhhheeCCCCCcCCCHHHHHHHHHHHHHhhccCCCCCCCCceEEEEEEeeEEEEccC
Confidence 986532211 01112222221 12233568999999999987665
No 21
>COG5015 Uncharacterized conserved protein [Function unknown]
Probab=98.38 E-value=1.2e-05 Score=65.95 Aligned_cols=114 Identities=15% Similarity=0.172 Sum_probs=90.6
Q ss_pred HHHHHHhcCCeEEEEeecCCCCCceeEEEeeEEEcCCCCEEEEecCcchHhHhhhcCCceEEEEeeCCCCCcceEEEEEE
Q 021298 91 EIRTVLDRSVRGMLSTFSQKYEGYPSGSMVDFACDADGTPILAVSSLAVHTKDLLANPKCSLLVARDPEDRTDLVITLHG 170 (314)
Q Consensus 91 ~ar~LL~~~~~g~LATv~~~~dG~P~~S~v~ya~d~dG~~~l~vS~~s~htrNL~~dPrvSL~V~~dp~d~~~~rVtl~G 170 (314)
++.++|+.+..+.|||+. +|.|-+-+..+.+...+.+||++.....-++.|++||.++++-.+ - + ...|.++|
T Consensus 3 d~leFLken~~~~laTve---~gkPrvRpfq~~f~~g~KlYfcTantK~~yKqik~np~vefcg~~-k-d--g~~vrlrg 75 (132)
T COG5015 3 DPLEFLKENKSVALATVE---DGKPRVRPFQVMFVEGEKLYFCTANTKPYYKQIKKNPEVEFCGMD-K-D--GVMVRLRG 75 (132)
T ss_pred cHHHHHHhCCcEEEEEcc---CCCcceeeccceeeeCCEEEEEeCCChHHHHHHhhCCCeEEEEec-C-C--ceEEEEee
Confidence 568899999999999997 799999888888777788999888888899999999999997653 1 1 34777999
Q ss_pred EEEEeChhHHHHHHHHHHHhCCCC--cc--ccCCCeEEEEEEEeEEEE
Q 021298 171 DATSVAEKDKAAIRAVYLAKHPNA--FW--VDFGDFQFMRIEPKAVRY 214 (314)
Q Consensus 171 ~a~~v~~ee~~~l~~~y~~rhP~~--~~--~~~~df~l~rL~p~~v~~ 214 (314)
+++.++.- .++++.++.+|.. .| .+.+-|.+|.++...+..
T Consensus 76 ~a~f~~ni---elkk~ale~yP~Lkeiy~tddnpifevfyld~~e~~m 120 (132)
T COG5015 76 RAEFVENI---ELKKLALEIYPVLKEIYPTDDNPIFEVFYLDSGEGEM 120 (132)
T ss_pred eEEeccch---HHHHHHhhhchhhHhhccCCCCCEEEEEEEeeccEEE
Confidence 99999764 3566677777865 34 345678899888776653
No 22
>PLN02918 pyridoxine (pyridoxamine) 5'-phosphate oxidase
Probab=98.08 E-value=9.9e-05 Score=75.31 Aligned_cols=115 Identities=20% Similarity=0.258 Sum_probs=83.8
Q ss_pred hcCCeEEEEeecCCCCCceeEEEeeEE-EcCCCCEEEEecCcchHhHhhhcCCceEEEEeeCCCCCcceEEEEEEEEEEe
Q 021298 97 DRSVRGMLSTFSQKYEGYPSGSMVDFA-CDADGTPILAVSSLAVHTKDLLANPKCSLLVARDPEDRTDLVITLHGDATSV 175 (314)
Q Consensus 97 ~~~~~g~LATv~~~~dG~P~~S~v~ya-~d~dG~~~l~vS~~s~htrNL~~dPrvSL~V~~dp~d~~~~rVtl~G~a~~v 175 (314)
...+.++|||++. +|.|.+-.|-+- +|++| ++|++...|+|.+.|++||+|+|++...+. ...|.+.|.++.+
T Consensus 369 ~eP~Am~LATv~~--~G~P~~RtVlLk~~d~~g-~~F~Tn~~S~K~~el~~Np~aal~F~w~~l---~rQVRi~G~v~~~ 442 (544)
T PLN02918 369 REPNAMALSTANK--DGKPSSRMVLLKGVDKNG-FVWYTNYESQKGSDLSENPSAALLFYWEEL---NRQVRVEGSVQKV 442 (544)
T ss_pred CCCccceEEeeCC--CCCeeeEEEEEeEEcCCc-eEEEECCCChhHHHHHhCCcEEEEeeeccc---cEEEEEEEEEEEC
Confidence 4567889999998 999998777654 56555 668888889999999999999999987432 4578999999999
Q ss_pred ChhHHH---------------------------HHHHH---HHHhCCCCc-cccCCCeEEEEEEEeEEEEEcc
Q 021298 176 AEKDKA---------------------------AIRAV---YLAKHPNAF-WVDFGDFQFMRIEPKAVRYVSG 217 (314)
Q Consensus 176 ~~ee~~---------------------------~l~~~---y~~rhP~~~-~~~~~df~l~rL~p~~v~~v~G 217 (314)
++++.+ .+.++ +.+++++.. ..-.+.+.-|+|.|+++.|-.|
T Consensus 443 ~~~es~~yf~sRp~~Sqi~A~aS~QS~~i~~r~~L~~~~~~~~~~~~~~~~vp~P~~WgGy~v~P~~iEFWQg 515 (544)
T PLN02918 443 PESESENYFHSRPRGSQIGAIVSKQSSVVPGRHVLYQEYKELEKKYSDGSVIPKPKNWGGYRLKPNLFEFWQG 515 (544)
T ss_pred CHHHHHHHHHhCCccccceEEecCCCCcCCCHHHHHHHHHHHHHHhcCCCCCCCCCCceeEEEecCEEEECCC
Confidence 876421 12222 223343321 2223567889999999998765
No 23
>TIGR00026 hi_GC_TIGR00026 deazaflavin-dependent nitroreductase family protein. This model represents a family of proteins found in paralogous families in the genera Mycobacterium and Streptomyces. Seven members are in Mycobacterium tuberculosis. Member protein Rv3547 has been characterized as a deazaflavin-dependent nitroreductase.
Probab=97.96 E-value=0.00012 Score=60.02 Aligned_cols=88 Identities=20% Similarity=0.201 Sum_probs=68.6
Q ss_pred CCeEEEEeecCCCCCceeEEEeeEEEcCCCCEEEEecCc-----chHhHhhhcCCceEEEEeeCCCCCcceEEEEEEEEE
Q 021298 99 SVRGMLSTFSQKYEGYPSGSMVDFACDADGTPILAVSSL-----AVHTKDLLANPKCSLLVARDPEDRTDLVITLHGDAT 173 (314)
Q Consensus 99 ~~~g~LATv~~~~dG~P~~S~v~ya~d~dG~~~l~vS~~-----s~htrNL~~dPrvSL~V~~dp~d~~~~rVtl~G~a~ 173 (314)
...+.|-|.+.+ .|.|+.++++|..++ |..++..|.. +..++||++||+|.+.+.. + +..+.++
T Consensus 7 ~p~~lL~t~GRk-SG~~r~tpl~~~~~~-~~~~vvas~~G~~~~p~W~~Nl~A~p~v~v~~~g--------~-~~~~~ar 75 (113)
T TIGR00026 7 LPVLLLTTTGRK-SGKPRTTPVTYVRHD-PGVLIVASNGGAPRHPDWYKNLKANPRVRVRVGG--------K-TFVATAR 75 (113)
T ss_pred CCEEEEEECCCC-CCcEEEEEEEEEEEC-CEEEEEEecCCCCCCCHHHHHhhhCCcEEEEECC--------E-EEEEEEE
Confidence 347788888664 899999999999875 5566554432 5589999999999998732 1 4789999
Q ss_pred EeChhHHHHHHHHHHHhCCCC-ccc
Q 021298 174 SVAEKDKAAIRAVYLAKHPNA-FWV 197 (314)
Q Consensus 174 ~v~~ee~~~l~~~y~~rhP~~-~~~ 197 (314)
.++++|.+++..+|.+++|.- .|.
T Consensus 76 ~v~~~e~~~~~~~~~~~~p~~~~yq 100 (113)
T TIGR00026 76 LVSGDERDQLWAGVVRLYPRYGRYQ 100 (113)
T ss_pred ECCchhHHHHHHHHHHHCcCHHHHH
Confidence 999988889999999999874 443
No 24
>KOG2586 consensus Pyridoxamine-phosphate oxidase [Coenzyme transport and metabolism]
Probab=97.72 E-value=0.0002 Score=63.75 Aligned_cols=79 Identities=23% Similarity=0.265 Sum_probs=61.6
Q ss_pred HhcCCeEEEEeecCCCCCceeEEEeeEE-EcCCCCEEEEecC-cchHhHhhhcCCceEEEEeeCCCCCcceEEEEEEEEE
Q 021298 96 LDRSVRGMLSTFSQKYEGYPSGSMVDFA-CDADGTPILAVSS-LAVHTKDLLANPKCSLLVARDPEDRTDLVITLHGDAT 173 (314)
Q Consensus 96 L~~~~~g~LATv~~~~dG~P~~S~v~ya-~d~dG~~~l~vS~-~s~htrNL~~dPrvSL~V~~dp~d~~~~rVtl~G~a~ 173 (314)
+......+|||++. +|.|..-+|-|- ++.+|.. |++.- .++|.+||..||.++|++...+.+ ..|.|.|.++
T Consensus 53 ~~~~~am~LsT~~~--d~rvssRmvLlKgl~~~gf~-fytn~~~srk~kdL~~NP~Aal~Fyw~~l~---rQVRveG~ve 126 (228)
T KOG2586|consen 53 IGEINAMTLSTADK--DGRVSSRMVLLKGLDHDGFV-FYTNYGTSRKGKDLQENPNAALLFYWEDLN---RQVRVEGIVE 126 (228)
T ss_pred cCchhheeehhccc--cCCcceeeeeeecccCCCeE-EEeeccccccccccccCCcceEEEeehhcc---ceeEEEeccc
Confidence 34456789999998 999998887765 7778865 44554 799999999999999999874432 3788899888
Q ss_pred EeChhHH
Q 021298 174 SVAEKDK 180 (314)
Q Consensus 174 ~v~~ee~ 180 (314)
.+++++.
T Consensus 127 ~l~~ee~ 133 (228)
T KOG2586|consen 127 KLPREEA 133 (228)
T ss_pred cCCHHHH
Confidence 8887643
No 25
>PF04075 DUF385: Domain of unknown function (DUF385) ; InterPro: IPR004378 This entry represents a family of proteins found in paralogous families in the genera Mycobacterium and Streptomyces. Seven members are in Mycobacterium tuberculosis. Member protein Rv3547 has been characterised as a deazaflavin-dependent nitroreductase [, ]. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3R5Y_D 3R5W_A 3R5R_E 3R5L_A 3R5P_A 3R5Z_B 3H96_A.
Probab=97.65 E-value=0.00057 Score=57.51 Aligned_cols=99 Identities=21% Similarity=0.260 Sum_probs=68.7
Q ss_pred CeEEEEeecCCCCCceeEEEeeEEEcCCCCEEEEecC-----cchHhHhhhcCCceEEEEeeCCCCCcceEEEEEEEEEE
Q 021298 100 VRGMLSTFSQKYEGYPSGSMVDFACDADGTPILAVSS-----LAVHTKDLLANPKCSLLVARDPEDRTDLVITLHGDATS 174 (314)
Q Consensus 100 ~~g~LATv~~~~dG~P~~S~v~ya~d~dG~~~l~vS~-----~s~htrNL~~dPrvSL~V~~dp~d~~~~rVtl~G~a~~ 174 (314)
..+.|.|.+.+ .|.|+.+++.|..+ +|.+++..+. ...-++||+++|.|.+.+.. -+..+.++.
T Consensus 26 ~~~lLtt~GRk-SG~~r~tpl~~~~~-g~~~~vva~~gG~~~~p~W~~Nl~A~p~v~v~~~g---------~~~~~~a~~ 94 (132)
T PF04075_consen 26 PVLLLTTTGRK-SGRPRRTPLVYVRD-GGRLVVVASNGGAPRHPDWYRNLRANPEVTVEVGG---------RRRRVRARE 94 (132)
T ss_dssp EEEEEEEE-TT-T-SEEEEEEEEEEE-TTEEEEE-SGGGCSSS-HHHHHHHHHSEEEEEETT---------EEEEEEEEE
T ss_pred cEEEEEECCCC-CCCeEEEEEEEEEe-CCEEEEEEccCCCCCCChhHHhhhhCCcEEEEECC---------EEEEEEEEE
Confidence 47888888764 79999999998877 4566665552 35689999999999998732 256778888
Q ss_pred eChhHHHHHHHHHHHhCCCC-cccc--CCCeEEEEEEE
Q 021298 175 VAEKDKAAIRAVYLAKHPNA-FWVD--FGDFQFMRIEP 209 (314)
Q Consensus 175 v~~ee~~~l~~~y~~rhP~~-~~~~--~~df~l~rL~p 209 (314)
++++|.+++.+++.+.+|.- .|.. .-.+.++.|+|
T Consensus 95 ~~~~er~~~~~~~~~~~p~~~~y~~~t~R~ipvv~l~p 132 (132)
T PF04075_consen 95 VTDDERARLWARLVAAYPGYADYQARTGRRIPVVVLEP 132 (132)
T ss_dssp E-HHHHHHHHHHHHHHSTHHHHHHHHCSSTS-EEEEEE
T ss_pred cCchHHHHHHHHHHHHCcChHHhcccCCCEeeEEEecC
Confidence 98888888988999888863 3321 12345666665
No 26
>PF04299 FMN_bind_2: Putative FMN-binding domain; InterPro: IPR007396 In Bacillus subtilis, family member P21341 from SWISSPROT, PAI 2, is involved in the negative regulation of protease synthesis and sporulation [].; PDB: 2OL5_A.
Probab=97.37 E-value=0.008 Score=52.70 Aligned_cols=122 Identities=19% Similarity=0.175 Sum_probs=77.7
Q ss_pred CHHHHHHHHhcCCeEEEEeecCCCCCceeEEEeeEEEcC----CCCEEEEecCcchHhHhhhcCCceEEEEeeC-----C
Q 021298 88 PLEEIRTVLDRSVRGMLSTFSQKYEGYPSGSMVDFACDA----DGTPILAVSSLAVHTKDLLANPKCSLLVARD-----P 158 (314)
Q Consensus 88 ~ae~ar~LL~~~~~g~LATv~~~~dG~P~~S~v~ya~d~----dG~~~l~vS~~s~htrNL~~dPrvSL~V~~d-----p 158 (314)
..+++++|+++..+|+|.|.. +|.|.+|.++|.++. .|.++-+++....+.+.+..+..|-+.+..+ |
T Consensus 11 d~~~l~~~i~~~pfa~Lvt~~---~~~~~athlP~~l~~~~~~~~~L~gHlAr~NP~~~~l~~~~~vl~iF~Gp~aYISP 87 (169)
T PF04299_consen 11 DPEELRAFIRAHPFATLVTNG---DGGPVATHLPFLLDEDDGGRGTLIGHLARANPQWKALDDGQEVLVIFQGPHAYISP 87 (169)
T ss_dssp -HCHHHHHHHHS-EEEEEEEE---TTEEEEEEEE-EE-T---TSSEEEEEEETTSGGGGGTT-TS-EEEEEEEEEEEE-C
T ss_pred CHHHHHHHHHhCCcEEEEEcC---CCCcceeeecEEEEeeeCCCCEEEEEeCCCCHhHhhcCCCCcEEEEEECCCeeECc
Confidence 345789999999999999976 477999999999984 5667778888888999998888877777641 1
Q ss_pred -------CC------CcceEEEEEEEEEEeCh-hHHHHHHHHHHHhCCCC---cc--cc---------CCCeEEEEEEEe
Q 021298 159 -------ED------RTDLVITLHGDATSVAE-KDKAAIRAVYLAKHPNA---FW--VD---------FGDFQFMRIEPK 210 (314)
Q Consensus 159 -------~d------~~~~rVtl~G~a~~v~~-ee~~~l~~~y~~rhP~~---~~--~~---------~~df~l~rL~p~ 210 (314)
+. +.+..|.+.|+++.+++ ++..+..++..++|-.. .| .+ .....-|+|+++
T Consensus 88 sWYp~k~~~~~~VPTWNY~aVh~~G~~~~~~d~~~~~~~l~~l~~~~E~~~~~pW~~~~~~~~~~~~ll~~IvGfei~I~ 167 (169)
T PF04299_consen 88 SWYPTKAEHGKVVPTWNYAAVHAYGTVRIIDDPDWLRAHLDRLTAHFEPDRPPPWSVDDAPEDYIERLLRGIVGFEIEIT 167 (169)
T ss_dssp CCS----STTS---EEEEEEEEEEEEEEE---HHHHHHHHHHHHHHHS-T-T----S-------HCHHHCTEEEEEEEEE
T ss_pred hhhcccCcCCCCCCCcCEEEEEEEEEEEEEeCHHHHHHHHHHHHHHhCCCCCCCcccccCCHHHHHHHhCCeEEEEEEEE
Confidence 01 35679999999999955 44444444333332111 22 11 234567788887
Q ss_pred EE
Q 021298 211 AV 212 (314)
Q Consensus 211 ~v 212 (314)
++
T Consensus 168 ~i 169 (169)
T PF04299_consen 168 RI 169 (169)
T ss_dssp EE
T ss_pred eC
Confidence 64
No 27
>PF12766 Pyridox_oxase_2: Pyridoxamine 5'-phosphate oxidase; InterPro: IPR024624 Pyridoxamine 5'-phosphate oxidase catalyses the oxidation of pyridoxamine-5-P (PMP) and pyridoxine-5-P (PNP) to pyridoxal-5-P (PLP), the terminal step in the de novo biosynthesis of PLP in Escherichia coli and part of the salvage pathway of this coenzyme in both E. coli and mammalian cells. This entry represents the FMN-binding domain of pyridoxamine 5'-phosphate oxidases that belong to the Alr4036 family.; GO: 0010181 FMN binding; PDB: 2I51_B 2OU5_B.
Probab=96.50 E-value=0.041 Score=44.12 Aligned_cols=74 Identities=22% Similarity=0.224 Sum_probs=52.5
Q ss_pred hcCCeEEEEeec-CCCCCceeEEEeeE-EEcCC-----CCEEEEecCcchHhHhhh-cCCceEEEEeeCCCCCcceEEEE
Q 021298 97 DRSVRGMLSTFS-QKYEGYPSGSMVDF-ACDAD-----GTPILAVSSLAVHTKDLL-ANPKCSLLVARDPEDRTDLVITL 168 (314)
Q Consensus 97 ~~~~~g~LATv~-~~~dG~P~~S~v~y-a~d~d-----G~~~l~vS~~s~htrNL~-~dPrvSL~V~~dp~d~~~~rVtl 168 (314)
...++.+|||++ + +|.|.+-.|-| .+..+ ..+.|++..-+.|...|. .||++++++... . ....+.+
T Consensus 18 ~~~~~~~LATv~~~--~~~P~~RTvVlRgf~~~~~~~~~~L~f~TD~RS~Kv~~l~~~~p~~e~~~~~~-~--~~~Q~Ri 92 (100)
T PF12766_consen 18 HPFRYFQLATVDPP--DGSPRVRTVVLRGFDPDLKPESDLLTFHTDARSPKVAQLASANPRVELVFWFP-E--TREQFRI 92 (100)
T ss_dssp CGGGCEEEEEEE-T--TTEEEEEEEEEEEEETT----TTEEEEEEETTSHHHHHHH-H--EEEEEEEEC-C--CTEEEEE
T ss_pred CCCceeEEEEecCC--CCCCceeEEEEcCcccccccccCeEEEEecCCchhHHHHhccCCCEEEEEEeC-C--ccEEEEE
Confidence 346789999999 6 89998755544 34444 335565555689999999 999999999863 2 2456778
Q ss_pred EEEEEEe
Q 021298 169 HGDATSV 175 (314)
Q Consensus 169 ~G~a~~v 175 (314)
.|++..+
T Consensus 93 ~G~a~ii 99 (100)
T PF12766_consen 93 RGRASII 99 (100)
T ss_dssp EEEEEEE
T ss_pred EEEEEEE
Confidence 8888765
No 28
>COG2808 PaiB Transcriptional regulator [Transcription]
Probab=95.29 E-value=0.35 Score=43.38 Aligned_cols=100 Identities=14% Similarity=0.186 Sum_probs=68.6
Q ss_pred CHHHHHHHHhcCCeEEEEeecCCCCCceeEEEeeEEEcCC--C--CEEEEecCcchHhHhhhcCCceEEEEee-C-----
Q 021298 88 PLEEIRTVLDRSVRGMLSTFSQKYEGYPSGSMVDFACDAD--G--TPILAVSSLAVHTKDLLANPKCSLLVAR-D----- 157 (314)
Q Consensus 88 ~ae~ar~LL~~~~~g~LATv~~~~dG~P~~S~v~ya~d~d--G--~~~l~vS~~s~htrNL~~dPrvSL~V~~-d----- 157 (314)
..+....|++...+|+|.|.. .|.|+++.++|.+++. | .++.+++....+.+.+.....|=+.+.. |
T Consensus 11 d~~~L~a~ir~~pfgtlvt~~---~~~p~AthlP~ll~e~~~~~~~L~~HlAraNp~w~~~~~~~~vLvvFqgpdAYISP 87 (209)
T COG2808 11 DPEVLHALIRAHPFGTLVTSG---GGGPFATHLPFLLNEEEGGEGVLIAHLARANPQWRGLEDGQPVLVVFQGPDAYISP 87 (209)
T ss_pred CHHHHHHHHHhCCceEEEecc---CCccccccCceEEeccCCCceEEEeeecccCCcccccCCCCeEEEEEeCCCcccCc
Confidence 457789999999999999987 4899999999998853 2 3334445555677777754455444432 1
Q ss_pred ---CC---------CCcceEEEEEEEEEEeChhHH-HHHHHHHHHh
Q 021298 158 ---PE---------DRTDLVITLHGDATSVAEKDK-AAIRAVYLAK 190 (314)
Q Consensus 158 ---p~---------d~~~~rVtl~G~a~~v~~ee~-~~l~~~y~~r 190 (314)
+. -+.+..|...|++..++|+++ +.+..+....
T Consensus 88 ~WY~sK~e~~~~VPTWNY~aVHayG~~~~~~D~~~~~~~~~~Lt~~ 133 (209)
T COG2808 88 AWYPSKRETPKVVPTWNYVAVHAYGTVRIIEDDEWLRELLARLTDE 133 (209)
T ss_pred ccccccccCCCcCCCcceEEEEEecceeeeccHHHHHHHHHHHHHH
Confidence 10 135678999999999998754 3444444433
No 29
>COG3576 Predicted flavin-nucleotide-binding protein structurally related to pyridoxine 5'-phosphate oxidase [General function prediction only]
Probab=91.94 E-value=1.1 Score=39.58 Aligned_cols=117 Identities=17% Similarity=0.181 Sum_probs=69.7
Q ss_pred HHHHHHhcCCeEEEEeecCCCCCceeEEEeeEEEcCC-CCEEEEecCc-chH-hHhhhcCCceEEEEeeCCCCCcceEEE
Q 021298 91 EIRTVLDRSVRGMLSTFSQKYEGYPSGSMVDFACDAD-GTPILAVSSL-AVH-TKDLLANPKCSLLVARDPEDRTDLVIT 167 (314)
Q Consensus 91 ~ar~LL~~~~~g~LATv~~~~dG~P~~S~v~ya~d~d-G~~~l~vS~~-s~h-trNL~~dPrvSL~V~~dp~d~~~~rVt 167 (314)
..++++....++.|+|++. ||.|-..+.+|.-..| +.+.+.+.+. ..+ -+||..||++++...... . ....-.
T Consensus 33 ~~~e~~~~~~~~~laT~d~--dG~p~~~~~p~~qr~d~~~~~~v~d~~~~~~~~~~lgnn~~~tl~n~~~~-~-~~~~f~ 108 (173)
T COG3576 33 HYREFIQTSQLAALATVDK--DGPPNVDPIPFAQRGDPAGFTIVIDDNTAGKTDRNLGNNPKITLRNILRN-R-RALLFL 108 (173)
T ss_pred hhhhhhccccEEEEEEecc--CCCCCcCccchhhccCCCCceEEeCcccccccccccccCccceeEEeccC-C-ccceEE
Confidence 3677888899999999998 8999999999865433 4444555554 334 456899999999876521 1 122344
Q ss_pred EEEEEEEeChhH-HHHHHHHHHHhCCCCccccCCCeEEEEEEEeEEEEEc
Q 021298 168 LHGDATSVAEKD-KAAIRAVYLAKHPNAFWVDFGDFQFMRIEPKAVRYVS 216 (314)
Q Consensus 168 l~G~a~~v~~ee-~~~l~~~y~~rhP~~~~~~~~df~l~rL~p~~v~~v~ 216 (314)
+.|+++...+.. .....+.+... ..++..-....+.++.++++-
T Consensus 109 v~gt~~I~~~g~~~~~~~~~~~~~-----~~~l~pk~~~vv~v~~v~~~~ 153 (173)
T COG3576 109 VKGTARIQGRGAVYDAVVKLAAFL-----MDGLPPKSAIVVTVEEVYFLA 153 (173)
T ss_pred ecceEEEEeccceehHHhhhhHhh-----ccCCCCceeEEEEeehhhhhh
Confidence 555554433211 11112222111 112334466777788877654
No 30
>PF04289 DUF447: Protein of unknown function (DUF447); InterPro: IPR007386 This entry contains archaeal and bacterial proteins of unknown function.; PDB: 2IML_A 3B5M_C 2PTF_A 2NR4_A.
Probab=83.87 E-value=2.8 Score=36.81 Aligned_cols=53 Identities=13% Similarity=0.180 Sum_probs=40.3
Q ss_pred EEEEeecCCCCCceeEEEeeEEEcCCCCEEEEecCcchHhHhhhcCCceEEEEeeCC
Q 021298 102 GMLSTFSQKYEGYPSGSMVDFACDADGTPILAVSSLAVHTKDLLANPKCSLLVARDP 158 (314)
Q Consensus 102 g~LATv~~~~dG~P~~S~v~ya~d~dG~~~l~vS~~s~htrNL~~dPrvSL~V~~dp 158 (314)
+.+.|.+. + .|+++|+...++ ++.+++..=..|...+||++++.+++.+++||
T Consensus 3 ~IvtT~~~--~-~~N~APiGi~~~-~~~~~~~lf~gS~T~~Nl~~~~~~vvnit~Dp 55 (177)
T PF04289_consen 3 VIVTTKNE--D-EPNAAPIGIIRD-GDELIIRLFKGSHTYENLKETGYFVVNITDDP 55 (177)
T ss_dssp EEEEEEST--T--EEEEEEEEEES-SSEEEEEEETTSHHHHHHHHHSEEEEEE---H
T ss_pred EEEEECCC--C-CCcCCcEEEEEE-CCEEEEEEcCCCchHHHHhhCCEEEEEECCCH
Confidence 45677776 6 899999998885 45677777778899999999999999998864
No 31
>PF10012 DUF2255: Uncharacterized protein conserved in bacteria (DUF2255); InterPro: IPR016888 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=59.70 E-value=99 Score=25.50 Aligned_cols=87 Identities=15% Similarity=0.093 Sum_probs=56.2
Q ss_pred HhcCCeEEEEeecCCCCCceeE--EEeeEEEcCCCCEEEEecCc--chHhHhhhcCCceEEEEeeCCCCCcceEEEEEEE
Q 021298 96 LDRSVRGMLSTFSQKYEGYPSG--SMVDFACDADGTPILAVSSL--AVHTKDLLANPKCSLLVARDPEDRTDLVITLHGD 171 (314)
Q Consensus 96 L~~~~~g~LATv~~~~dG~P~~--S~v~ya~d~dG~~~l~vS~~--s~htrNL~~dPrvSL~V~~dp~d~~~~rVtl~G~ 171 (314)
+..+....++...+ ||.-+. +++|.+.. ++.+|+-.-.. +..++.-....+..+.+.. +...=.
T Consensus 6 i~~adel~iap~r~--DG~t~~~p~~IW~V~v-dd~lYVRs~~G~~s~Wy~~A~~~~~GrI~a~G---------~~~dV~ 73 (116)
T PF10012_consen 6 IDAADELHIAPFRE--DGKTLRTPTWIWVVRV-DDDLYVRSYNGRNSRWYRAALAQGAGRIRAGG---------VEKDVT 73 (116)
T ss_pred cCccceEEeccccC--CCcccCCCeeEEEEEE-CCEEEEEecCCCcCHHHHHHhhCCCcEEEECC---------EEeeEE
Confidence 55677788999888 894444 77888876 56777655433 5677766666666555532 122223
Q ss_pred EEEeCh-hHHHHHHHHHHHhCCCC
Q 021298 172 ATSVAE-KDKAAIRAVYLAKHPNA 194 (314)
Q Consensus 172 a~~v~~-ee~~~l~~~y~~rhP~~ 194 (314)
.+++++ +..+.+-+.|..||...
T Consensus 74 F~~v~d~~~~~~iD~AYr~KY~~s 97 (116)
T PF10012_consen 74 FEPVTDPALNDAIDAAYRAKYGGS 97 (116)
T ss_pred EEeCCCHHHHHHHHHHHHHhcCCC
Confidence 445533 45678899999998875
No 32
>PF08922 DUF1905: Domain of unknown function (DUF1905); InterPro: IPR015018 This family consist of hypothetical bacterial proteins. ; PDB: 2D9R_A.
Probab=49.65 E-value=81 Score=23.88 Aligned_cols=58 Identities=14% Similarity=0.058 Sum_probs=35.7
Q ss_pred HHHHHHhc--CCeEEEEeecCCCCCceeEEEeeEEEcCCCCEEEEecCcchHhHhhhcCCceEEEE
Q 021298 91 EIRTVLDR--SVRGMLSTFSQKYEGYPSGSMVDFACDADGTPILAVSSLAVHTKDLLANPKCSLLV 154 (314)
Q Consensus 91 ~ar~LL~~--~~~g~LATv~~~~dG~P~~S~v~ya~d~dG~~~l~vS~~s~htrNL~~dPrvSL~V 154 (314)
.+.+|-.. ...-+-+|+ +|.+|-+.+.. ..+|..+|.++..-++...+.....|++.+
T Consensus 21 v~~~l~~~~~g~v~V~~tI----~g~~~~~sl~p--~g~G~~~Lpv~~~vRk~~g~~~Gd~V~v~l 80 (80)
T PF08922_consen 21 VAEELGEGGWGRVPVRGTI----DGHPWRTSLFP--MGNGGYILPVKAAVRKAIGKEAGDTVEVTL 80 (80)
T ss_dssp HHHHH--S--S-EEEEEEE----TTEEEEEEEEE--SSTT-EEEEE-HHHHHHHT--TTSEEEEEE
T ss_pred HHHHhccccCCceEEEEEE----CCEEEEEEEEE--CCCCCEEEEEcHHHHHHcCCCCCCEEEEEC
Confidence 34444444 577788888 68999764432 667888888887777877777777776653
No 33
>COG2075 RPL24A Ribosomal protein L24E [Translation, ribosomal structure and biogenesis]
Probab=35.04 E-value=46 Score=24.69 Aligned_cols=32 Identities=25% Similarity=0.296 Sum_probs=26.0
Q ss_pred EEEeeEEEcCCCCEEEEecCcchHhHhhhcCCc
Q 021298 117 GSMVDFACDADGTPILAVSSLAVHTKDLLANPK 149 (314)
Q Consensus 117 ~S~v~ya~d~dG~~~l~vS~~s~htrNL~~dPr 149 (314)
|+..-|+.. ||.++.+.|+...+.-.+.+|||
T Consensus 16 GtG~m~Vr~-Dg~v~~FcssKc~k~~~~~rnPR 47 (66)
T COG2075 16 GTGIMYVRN-DGKVLRFCSSKCEKLFKLGRNPR 47 (66)
T ss_pred CceEEEEec-CCeEEEEechhHHHHHHccCCCc
Confidence 566668875 79999999999888777888987
No 34
>PF01613 Flavin_Reduct: Flavin reductase like domain; InterPro: IPR002563 The FMN-binding domain is found in NAD(P)H-flavin oxidoreductases (flavin reductases), a class of enzymes capable of producing reduced flavin for bacterial bioluminescence and other biological processes, and various other oxidoreductase and monooxygenase enzymes [, , ]. This domain consists of a beta-barrel with Greek key topology, and is related to the ferredoxin reductase-like FAD-binding domain. The flavin reductases have a different dimerisation mode than that found in the PNP oxidase-like family, which also carries an FMN-binding domain with a similar topology.; GO: 0010181 FMN binding, 0016491 oxidoreductase activity, 0042602 flavin reductase activity, 0055114 oxidation-reduction process; PDB: 2ECU_A 2ED4_B 2ECR_A 1YOA_A 2QCK_A 3HMZ_A 2D36_A 2D38_A 2D37_A 3NFW_D ....
Probab=29.80 E-value=96 Score=25.75 Aligned_cols=53 Identities=11% Similarity=0.193 Sum_probs=36.3
Q ss_pred eEEEEeecCCCCCceeEEEeeEEE--cC-CCCEEEEecCcchHhHhhhcCCceEEEEee
Q 021298 101 RGMLSTFSQKYEGYPSGSMVDFAC--DA-DGTPILAVSSLAVHTKDLLANPKCSLLVAR 156 (314)
Q Consensus 101 ~g~LATv~~~~dG~P~~S~v~ya~--d~-dG~~~l~vS~~s~htrNL~~dPrvSL~V~~ 156 (314)
.++++| .. +|.+.+.++.... .. -..+.+.+...+.-.+||++.+.+++.+..
T Consensus 8 v~vvtt-~~--~g~~~~~~~s~~~~~s~~Pp~v~~~l~~~~~t~~~i~~~~~f~vn~l~ 63 (154)
T PF01613_consen 8 VAVVTT-DE--DGEPNGMTVSSVTSVSLDPPLVLVSLNKSSHTYDNIEESGEFTVNVLS 63 (154)
T ss_dssp -EEEEE-EE--TTEEEEEEESSEEEEETTTTEEEEEEETTSHHHHHHHHHSEEEEEEEB
T ss_pred cEEEEE-CC--CCeEEEEEeeeeEEEECCCCEEEEEECCCCchhHHHhhCCcEEEEeCH
Confidence 456677 66 8998876665432 11 234556666667778899999999998864
No 35
>PRK14891 50S ribosomal protein L24e/unknown domain fusion protein; Provisional
Probab=27.80 E-value=46 Score=27.94 Aligned_cols=32 Identities=28% Similarity=0.281 Sum_probs=25.4
Q ss_pred EEEeeEEEcCCCCEEEEecCcchHhHhhhcCCc
Q 021298 117 GSMVDFACDADGTPILAVSSLAVHTKDLLANPK 149 (314)
Q Consensus 117 ~S~v~ya~d~dG~~~l~vS~~s~htrNL~~dPr 149 (314)
|+...|+.. ||.+++++++...+.-.+++|||
T Consensus 17 G~G~~fVR~-DGkvf~FcssKC~k~f~~kRnPR 48 (131)
T PRK14891 17 GTGTMFVRK-DGTVLHFVDSKCEKNYDLGREAR 48 (131)
T ss_pred CCCcEEEec-CCCEEEEecHHHHHHHHccCCCc
Confidence 445557765 79999999998887778899997
No 36
>PF10756 bPH_6: Bacterial PH domain; InterPro: IPR019692 Proteins in this entry are conserved in the Actinomycetales. Although several members are annotated as RbiX homologues, RbiX being a putative regulator of riboflavin biosynthesis, the function could not be confirmed. This entry also includes low molecular weight protein antigen 6.
Probab=24.75 E-value=79 Score=23.15 Aligned_cols=34 Identities=12% Similarity=0.162 Sum_probs=27.8
Q ss_pred EeecCCCcEEEEcceeEEecCCCeeeEEecCccc
Q 021298 278 LDLDSLGFNVKVLLTVLSGACPQVIDLLLDFVGW 311 (314)
Q Consensus 278 ~~iD~~G~~lr~~~~~~r~~F~~p~~vr~pf~~~ 311 (314)
+.+|..|+.++-.-...++++++-..||++....
T Consensus 4 v~v~~~Gl~vr~~~rt~~vpW~~I~~v~~~~~~~ 37 (73)
T PF10756_consen 4 VEVDPDGLRVRNLFRTRRVPWSEIAGVRFRRGRR 37 (73)
T ss_pred EEEcCCcEEEEcCceeEEEChHHeEEEEccCCce
Confidence 5689999999987788888888888888776643
No 37
>PF13152 DUF3967: Protein of unknown function (DUF3967)
Probab=23.79 E-value=53 Score=21.19 Aligned_cols=17 Identities=24% Similarity=0.347 Sum_probs=13.3
Q ss_pred chhHHHhhHHhHHhhcC
Q 021298 69 DANVFELIQKHQEAAAR 85 (314)
Q Consensus 69 ~~~~~~~~~~~~~~a~~ 85 (314)
|..+|++|||.|+...-
T Consensus 6 D~~Lm~~iREiQE~Kkl 22 (34)
T PF13152_consen 6 DEQLMQTIREIQETKKL 22 (34)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 55699999999976543
No 38
>cd00472 Ribosomal_L24e_L24 Ribosomal protein L24e/L24 is a ribosomal protein found in eukaryotes (L24) and in archaea (L24e, distinct from archaeal L24). L24e/L24 is located on the surface of the large subunit, adjacent to proteins L14 and L3, and near the translation factor binding site. L24e/L24 appears to play a role in the kinetics of peptide synthesis, and may be involved in interactions between the large and small subunits, either directly or through other factors. In mouse, a deletion mutation in L24 has been identified as the cause for the belly spot and tail (Bst) mutation that results in disrupted pigmentation, somitogenesis and retinal cell fate determination. L24 may be an important protein in eukaryotic reproduction: in shrimp, L24 expression is elevated in the ovary, suggesting a role in oogenesis, and in Arabidopsis, L24 has been proposed to have a specific function in gynoecium development. No protein with sequence or structural homology to L24e/L24 has been identifi
Probab=20.91 E-value=94 Score=22.07 Aligned_cols=32 Identities=22% Similarity=0.142 Sum_probs=24.6
Q ss_pred EEEeeEEEcCCCCEEEEecCcchHhHhhhcCCc
Q 021298 117 GSMVDFACDADGTPILAVSSLAVHTKDLLANPK 149 (314)
Q Consensus 117 ~S~v~ya~d~dG~~~l~vS~~s~htrNL~~dPr 149 (314)
|+..-|+.. ||.++.+++....+.-.+++|||
T Consensus 16 G~G~~~Vr~-Dgkv~~F~s~Kc~~~~~~krnPR 47 (54)
T cd00472 16 GHGKMYVRN-DGKVFRFCSSKCEKNFLRKRNPR 47 (54)
T ss_pred CCccEEEec-CCCEEEEECHHHHHHHHCcCCCC
Confidence 344457764 79999999988887777888997
Done!